Query 015709
Match_columns 402
No_of_seqs 262 out of 1197
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 08:50:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015709.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015709hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2160 Armadillo/beta-catenin 100.0 3.1E-45 6.6E-50 359.0 26.7 311 75-395 10-341 (342)
2 KOG0166 Karyopherin (importin) 99.9 3E-20 6.5E-25 191.7 20.7 240 117-363 215-470 (514)
3 KOG0166 Karyopherin (importin) 99.8 9.1E-19 2E-23 180.8 17.6 219 133-360 111-331 (514)
4 COG5064 SRP1 Karyopherin (impo 99.8 5.8E-18 1.3E-22 165.3 14.0 221 118-342 222-449 (526)
5 PLN03200 cellulose synthase-in 99.8 7E-17 1.5E-21 187.5 25.1 221 135-364 450-750 (2102)
6 PLN03200 cellulose synthase-in 99.8 7.3E-17 1.6E-21 187.3 24.7 217 146-364 417-666 (2102)
7 PF08609 Fes1: Nucleotide exch 99.7 1.8E-18 3.8E-23 141.9 6.8 89 77-170 3-92 (92)
8 COG5064 SRP1 Karyopherin (impo 99.7 2.7E-17 5.9E-22 160.6 11.5 204 151-362 133-339 (526)
9 KOG4224 Armadillo repeat prote 99.6 1.4E-14 3E-19 142.9 18.0 201 148-358 182-385 (550)
10 KOG4224 Armadillo repeat prote 99.6 5.4E-15 1.2E-19 145.7 10.8 208 148-366 100-309 (550)
11 cd00020 ARM Armadillo/beta-cat 99.5 1.8E-13 3.9E-18 114.0 14.5 118 169-288 2-119 (120)
12 cd00020 ARM Armadillo/beta-cat 99.4 7.5E-12 1.6E-16 104.2 13.5 118 211-335 2-119 (120)
13 PF05804 KAP: Kinesin-associat 99.2 6.3E-10 1.4E-14 120.6 19.8 195 151-358 267-462 (708)
14 PF10508 Proteasom_PSMB: Prote 99.2 3.2E-09 6.9E-14 112.1 23.1 205 136-354 43-247 (503)
15 PF04826 Arm_2: Armadillo-like 99.2 7E-10 1.5E-14 107.3 16.3 172 171-355 9-181 (254)
16 KOG2160 Armadillo/beta-catenin 99.2 2.1E-09 4.5E-14 106.7 19.8 175 157-342 68-246 (342)
17 KOG4199 Uncharacterized conser 99.0 6E-08 1.3E-12 95.7 19.7 189 150-346 259-453 (461)
18 KOG4199 Uncharacterized conser 99.0 1.4E-07 3E-12 93.1 22.1 216 139-363 197-429 (461)
19 PF04826 Arm_2: Armadillo-like 98.9 7.9E-08 1.7E-12 93.0 19.5 193 130-337 11-206 (254)
20 PF03224 V-ATPase_H_N: V-ATPas 98.9 2E-08 4.4E-13 99.7 15.6 222 146-383 70-310 (312)
21 PF10508 Proteasom_PSMB: Prote 98.9 2E-07 4.3E-12 98.5 20.9 194 115-319 60-255 (503)
22 KOG1293 Proteins containing ar 98.8 5.5E-08 1.2E-12 102.5 14.1 171 164-340 367-537 (678)
23 KOG0168 Putative ubiquitin fus 98.8 3.4E-07 7.5E-12 98.7 18.4 240 127-382 163-409 (1051)
24 PF05804 KAP: Kinesin-associat 98.8 1.3E-06 2.8E-11 95.2 22.8 205 150-367 429-638 (708)
25 KOG1048 Neural adherens juncti 98.7 2.2E-07 4.8E-12 99.8 15.6 212 176-397 235-470 (717)
26 cd00256 VATPase_H VATPase_H, r 98.6 2.2E-05 4.7E-10 81.2 25.0 244 130-389 52-310 (429)
27 KOG0946 ER-Golgi vesicle-tethe 98.3 1.7E-05 3.7E-10 85.4 15.5 202 131-337 61-297 (970)
28 PRK09687 putative lyase; Provi 98.3 3E-05 6.4E-10 76.2 16.2 168 133-334 25-219 (280)
29 PF12348 CLASP_N: CLASP N term 98.3 1.1E-05 2.3E-10 75.9 12.5 185 141-338 15-208 (228)
30 PF08045 CDC14: Cell division 98.3 1.4E-05 3.1E-10 77.3 13.2 103 187-289 104-207 (257)
31 PRK09687 putative lyase; Provi 98.2 4.4E-05 9.5E-10 75.0 16.2 156 146-335 67-249 (280)
32 PF00514 Arm: Armadillo/beta-c 98.2 3.6E-06 7.7E-11 58.4 5.6 41 205-245 1-41 (41)
33 KOG2122 Beta-catenin-binding p 98.1 5.3E-05 1.2E-09 85.9 15.2 211 153-365 371-588 (2195)
34 KOG1048 Neural adherens juncti 98.1 4.4E-05 9.5E-10 82.5 13.4 116 217-337 234-350 (717)
35 PF13646 HEAT_2: HEAT repeats; 98.0 1.6E-05 3.4E-10 63.2 7.2 87 176-285 1-88 (88)
36 PF13513 HEAT_EZ: HEAT-like re 98.0 1.1E-05 2.4E-10 59.2 5.9 55 188-243 1-55 (55)
37 KOG0168 Putative ubiquitin fus 98.0 0.00071 1.5E-08 73.8 20.0 278 76-366 150-442 (1051)
38 PRK13800 putative oxidoreducta 97.9 0.00063 1.4E-08 77.0 19.9 28 307-334 838-865 (897)
39 KOG2759 Vacuolar H+-ATPase V1 97.9 0.0014 3.1E-08 66.8 19.8 215 131-358 65-298 (442)
40 PF09759 Atx10homo_assoc: Spin 97.9 6.3E-05 1.4E-09 63.0 8.1 67 190-256 2-70 (102)
41 KOG4500 Rho/Rac GTPase guanine 97.9 0.00012 2.5E-09 74.8 11.2 188 172-365 85-280 (604)
42 PF00514 Arm: Armadillo/beta-c 97.9 1.8E-05 4E-10 54.8 4.0 38 165-202 3-40 (41)
43 PRK13800 putative oxidoreducta 97.8 0.00056 1.2E-08 77.4 17.7 123 174-336 714-836 (897)
44 PF01602 Adaptin_N: Adaptin N 97.8 0.00094 2E-08 70.1 18.3 203 112-340 22-225 (526)
45 PF01602 Adaptin_N: Adaptin N 97.8 0.0016 3.4E-08 68.4 18.8 168 139-334 12-179 (526)
46 KOG4500 Rho/Rac GTPase guanine 97.8 0.00024 5.2E-09 72.6 11.5 148 184-337 52-210 (604)
47 KOG2171 Karyopherin (importin) 97.8 0.00095 2.1E-08 74.9 17.1 176 176-363 346-526 (1075)
48 PF03224 V-ATPase_H_N: V-ATPas 97.7 0.00064 1.4E-08 67.5 14.0 185 134-327 108-305 (312)
49 KOG1517 Guanine nucleotide bin 97.7 0.0023 5.1E-08 71.3 18.3 183 150-338 487-673 (1387)
50 KOG0946 ER-Golgi vesicle-tethe 97.7 0.0031 6.7E-08 68.6 18.7 220 127-358 18-262 (970)
51 PF05536 Neurochondrin: Neuroc 97.6 0.0028 6E-08 67.9 17.9 153 129-290 3-169 (543)
52 PF11698 V-ATPase_H_C: V-ATPas 97.6 0.00012 2.5E-09 63.0 5.1 86 118-205 31-117 (119)
53 KOG1293 Proteins containing ar 97.5 0.0025 5.5E-08 68.0 15.6 140 146-289 390-533 (678)
54 KOG3678 SARM protein (with ste 97.5 0.0017 3.7E-08 67.1 13.4 176 172-358 178-356 (832)
55 KOG2122 Beta-catenin-binding p 97.5 0.0013 2.9E-08 75.1 13.3 178 154-338 415-603 (2195)
56 COG5369 Uncharacterized conser 97.4 0.0005 1.1E-08 71.9 8.8 142 192-339 407-548 (743)
57 PF13646 HEAT_2: HEAT repeats; 97.4 0.00063 1.4E-08 53.8 7.1 86 218-332 1-88 (88)
58 PTZ00429 beta-adaptin; Provisi 97.4 0.016 3.6E-07 64.2 20.2 159 112-289 48-208 (746)
59 smart00185 ARM Armadillo/beta- 97.4 0.00035 7.6E-09 47.4 4.6 39 165-203 3-41 (41)
60 KOG2171 Karyopherin (importin) 97.3 0.022 4.7E-07 64.4 20.7 207 132-356 248-477 (1075)
61 PF14664 RICTOR_N: Rapamycin-i 97.3 0.01 2.2E-07 60.7 16.7 184 145-338 80-271 (371)
62 smart00185 ARM Armadillo/beta- 97.2 0.00086 1.9E-08 45.4 5.4 39 206-244 2-40 (41)
63 KOG2759 Vacuolar H+-ATPase V1 97.2 0.014 3.1E-07 59.7 15.8 202 129-337 153-439 (442)
64 KOG4646 Uncharacterized conser 97.1 0.0057 1.2E-07 54.0 10.5 126 176-310 18-144 (173)
65 PTZ00429 beta-adaptin; Provisi 97.0 0.057 1.2E-06 60.0 20.1 164 146-337 45-209 (746)
66 PF09759 Atx10homo_assoc: Spin 97.0 0.0024 5.2E-08 53.5 6.8 67 233-304 3-69 (102)
67 KOG1789 Endocytosis protein RM 97.0 0.029 6.4E-07 63.0 16.7 135 150-291 1742-1885(2235)
68 cd00256 VATPase_H VATPase_H, r 96.9 0.046 9.9E-07 56.9 17.2 157 176-339 55-219 (429)
69 TIGR02270 conserved hypothetic 96.9 0.013 2.9E-07 60.7 13.2 119 175-334 87-205 (410)
70 KOG1517 Guanine nucleotide bin 96.8 0.013 2.8E-07 65.6 12.3 124 165-290 545-672 (1387)
71 KOG0213 Splicing factor 3b, su 96.8 0.034 7.4E-07 60.5 14.8 143 179-336 804-954 (1172)
72 PF11698 V-ATPase_H_C: V-ATPas 96.7 0.0036 7.8E-08 53.8 6.0 72 175-246 44-116 (119)
73 PF05536 Neurochondrin: Neuroc 96.7 0.094 2E-06 56.3 18.0 155 175-338 6-170 (543)
74 PF05004 IFRD: Interferon-rela 96.7 0.31 6.8E-06 48.6 20.5 241 133-394 45-306 (309)
75 COG5369 Uncharacterized conser 96.6 0.021 4.5E-07 60.2 11.7 168 172-344 429-602 (743)
76 COG5096 Vesicle coat complex, 96.5 0.056 1.2E-06 59.6 15.0 139 176-336 57-195 (757)
77 PF11841 DUF3361: Domain of un 96.5 0.051 1.1E-06 49.1 12.2 122 166-290 3-132 (160)
78 TIGR02270 conserved hypothetic 96.5 0.32 7E-06 50.5 19.8 159 131-337 117-297 (410)
79 PF13513 HEAT_EZ: HEAT-like re 96.5 0.0049 1.1E-07 45.0 4.7 55 230-287 1-55 (55)
80 KOG4413 26S proteasome regulat 96.5 0.042 9.2E-07 55.0 12.4 154 176-337 84-244 (524)
81 KOG4646 Uncharacterized conser 96.5 0.046 9.9E-07 48.4 11.2 108 146-254 30-137 (173)
82 KOG1241 Karyopherin (importin) 96.4 0.21 4.5E-06 54.7 18.1 176 181-363 371-556 (859)
83 PF10165 Ric8: Guanine nucleot 96.4 0.11 2.4E-06 54.4 15.8 134 153-289 1-168 (446)
84 COG5181 HSH155 U2 snRNP splice 96.3 0.053 1.2E-06 58.0 12.5 146 177-336 607-759 (975)
85 KOG1062 Vesicle coat complex A 96.3 0.15 3.2E-06 56.1 15.9 200 112-339 50-266 (866)
86 KOG3678 SARM protein (with ste 96.2 0.091 2E-06 54.8 13.2 154 133-290 182-337 (832)
87 PF06371 Drf_GBD: Diaphanous G 96.1 0.029 6.3E-07 50.9 8.8 112 217-335 67-186 (187)
88 PF14664 RICTOR_N: Rapamycin-i 96.1 0.53 1.1E-05 48.3 18.7 178 147-337 39-227 (371)
89 KOG1991 Nuclear transport rece 96.1 0.89 1.9E-05 51.2 21.4 119 133-254 412-541 (1010)
90 KOG1222 Kinesin associated pro 96.0 0.41 8.8E-06 50.3 17.2 196 158-366 451-651 (791)
91 KOG1222 Kinesin associated pro 96.0 0.055 1.2E-06 56.5 11.0 122 163-290 334-456 (791)
92 PF05918 API5: Apoptosis inhib 96.0 0.061 1.3E-06 57.6 11.4 84 176-270 25-108 (556)
93 PF11841 DUF3361: Domain of un 95.9 0.14 3E-06 46.3 11.8 126 209-340 4-135 (160)
94 PF02985 HEAT: HEAT repeat; I 95.9 0.012 2.5E-07 38.3 3.6 29 176-204 2-30 (31)
95 KOG1824 TATA-binding protein-i 95.9 0.6 1.3E-05 52.5 18.6 217 114-345 30-292 (1233)
96 COG1413 FOG: HEAT repeat [Ener 95.9 0.58 1.3E-05 46.4 17.4 125 175-337 75-210 (335)
97 KOG2023 Nuclear transport rece 95.8 0.18 3.9E-06 54.6 13.6 151 130-290 127-286 (885)
98 COG5096 Vesicle coat complex, 95.7 0.44 9.6E-06 52.8 17.0 160 112-289 35-195 (757)
99 PF04078 Rcd1: Cell differenti 95.6 0.37 8E-06 46.9 14.2 196 146-346 8-227 (262)
100 KOG1241 Karyopherin (importin) 95.6 0.98 2.1E-05 49.7 18.5 228 128-366 32-276 (859)
101 PF08045 CDC14: Cell division 95.4 0.16 3.5E-06 49.4 11.0 101 149-249 107-211 (257)
102 PF12717 Cnd1: non-SMC mitotic 95.4 0.44 9.4E-06 43.4 13.3 90 187-289 1-92 (178)
103 PF12348 CLASP_N: CLASP N term 95.4 0.15 3.3E-06 47.7 10.5 132 151-289 71-206 (228)
104 PF12755 Vac14_Fab1_bd: Vacuol 95.3 0.081 1.8E-06 43.9 7.5 66 175-244 28-95 (97)
105 COG1413 FOG: HEAT repeat [Ener 95.2 0.31 6.7E-06 48.4 12.6 92 174-288 43-134 (335)
106 PF12460 MMS19_C: RNAPII trans 95.0 0.57 1.2E-05 48.5 14.5 109 176-289 273-394 (415)
107 PF08569 Mo25: Mo25-like; Int 94.8 4.4 9.4E-05 41.1 19.6 151 187-343 136-290 (335)
108 KOG1824 TATA-binding protein-i 94.7 0.92 2E-05 51.1 15.3 190 131-340 817-1040(1233)
109 KOG2023 Nuclear transport rece 94.7 0.48 1E-05 51.5 12.8 158 175-346 129-294 (885)
110 PF02985 HEAT: HEAT repeat; I 94.6 0.064 1.4E-06 34.7 4.1 29 218-246 2-30 (31)
111 PF14668 RICTOR_V: Rapamycin-i 94.6 0.17 3.6E-06 39.9 7.0 65 191-257 4-69 (73)
112 KOG1059 Vesicle coat complex A 94.5 0.84 1.8E-05 50.0 14.1 143 175-336 182-401 (877)
113 PF06025 DUF913: Domain of Unk 94.5 1.2 2.6E-05 45.8 15.0 83 187-270 122-208 (379)
114 KOG4413 26S proteasome regulat 94.5 0.93 2E-05 45.7 13.5 198 130-335 77-285 (524)
115 KOG1061 Vesicle coat complex A 94.4 2.5 5.4E-05 46.6 17.6 161 112-290 29-190 (734)
116 PF12717 Cnd1: non-SMC mitotic 94.3 2 4.4E-05 39.0 14.7 90 148-246 3-93 (178)
117 KOG1242 Protein containing ada 94.2 3.8 8.1E-05 44.1 18.3 173 148-337 269-445 (569)
118 KOG2734 Uncharacterized conser 94.2 3.5 7.5E-05 43.1 17.2 181 150-337 199-401 (536)
119 KOG2259 Uncharacterized conser 94.1 0.49 1.1E-05 51.3 11.3 178 148-337 194-440 (823)
120 PF12719 Cnd3: Nuclear condens 94.0 2.9 6.3E-05 41.2 16.1 108 174-290 26-144 (298)
121 KOG2025 Chromosome condensatio 94.0 3.5 7.7E-05 45.3 17.5 131 146-284 58-188 (892)
122 KOG1061 Vesicle coat complex A 93.9 0.55 1.2E-05 51.5 11.6 143 174-338 49-191 (734)
123 PF12460 MMS19_C: RNAPII trans 93.9 6.1 0.00013 40.9 19.0 192 127-338 185-396 (415)
124 PF12031 DUF3518: Domain of un 93.9 0.25 5.5E-06 47.5 8.0 53 177-229 175-229 (257)
125 PF13251 DUF4042: Domain of un 93.9 1.1 2.4E-05 41.4 12.0 146 189-339 1-177 (182)
126 cd03561 VHS VHS domain family; 93.8 1 2.2E-05 39.1 11.2 74 175-248 38-115 (133)
127 KOG0212 Uncharacterized conser 93.7 2.6 5.7E-05 45.1 15.6 138 176-335 338-479 (675)
128 cd03567 VHS_GGA VHS domain fam 93.7 0.82 1.8E-05 40.4 10.4 73 175-247 39-118 (139)
129 KOG2973 Uncharacterized conser 93.7 6.8 0.00015 39.3 17.6 236 129-378 42-309 (353)
130 KOG1062 Vesicle coat complex A 93.6 7.5 0.00016 43.3 19.4 180 148-337 309-545 (866)
131 cd03569 VHS_Hrs_Vps27p VHS dom 93.6 0.94 2E-05 40.1 10.7 73 175-247 42-116 (142)
132 KOG2734 Uncharacterized conser 93.3 12 0.00026 39.2 20.1 196 150-352 101-321 (536)
133 smart00288 VHS Domain present 93.3 1.2 2.6E-05 38.8 10.8 72 176-247 39-113 (133)
134 PF12755 Vac14_Fab1_bd: Vacuol 93.2 0.98 2.1E-05 37.4 9.6 93 191-288 3-95 (97)
135 PF06371 Drf_GBD: Diaphanous G 93.2 0.36 7.8E-06 43.7 7.7 91 153-244 84-186 (187)
136 PF00790 VHS: VHS domain; Int 92.9 0.77 1.7E-05 40.3 9.0 72 175-246 43-119 (140)
137 cd03568 VHS_STAM VHS domain fa 92.7 1.1 2.4E-05 39.7 9.8 74 175-248 38-113 (144)
138 KOG1248 Uncharacterized conser 92.5 5.3 0.00011 46.1 16.8 209 111-335 672-897 (1176)
139 COG5231 VMA13 Vacuolar H+-ATPa 92.4 2.2 4.7E-05 43.0 12.2 169 163-337 223-429 (432)
140 PF10165 Ric8: Guanine nucleot 92.4 1.1 2.3E-05 47.1 10.8 122 240-367 5-140 (446)
141 KOG1820 Microtubule-associated 92.4 3.3 7.2E-05 46.6 15.0 171 148-337 268-444 (815)
142 KOG1077 Vesicle coat complex A 92.1 3 6.6E-05 45.8 13.7 89 231-334 325-431 (938)
143 KOG0212 Uncharacterized conser 91.9 2.6 5.6E-05 45.2 12.6 141 146-290 263-407 (675)
144 KOG2999 Regulator of Rac1, req 91.8 4.6 0.0001 43.3 14.4 158 127-289 79-242 (713)
145 PF11701 UNC45-central: Myosin 91.8 0.74 1.6E-05 41.3 7.6 147 176-333 5-156 (157)
146 KOG2956 CLIP-associating prote 91.7 15 0.00033 38.7 17.7 189 130-336 285-477 (516)
147 PF04078 Rcd1: Cell differenti 91.5 2.2 4.7E-05 41.7 10.9 158 129-288 40-217 (262)
148 KOG3036 Protein involved in ce 91.5 15 0.00032 35.9 17.8 190 148-346 39-256 (293)
149 KOG0301 Phospholipase A2-activ 91.1 5.2 0.00011 43.7 14.1 141 136-289 549-704 (745)
150 KOG3036 Protein involved in ce 91.0 16 0.00035 35.6 16.5 200 78-288 24-246 (293)
151 KOG1242 Protein containing ada 90.6 5.4 0.00012 43.0 13.7 146 175-337 97-246 (569)
152 PF05918 API5: Apoptosis inhib 90.5 3.1 6.7E-05 44.9 12.0 98 177-286 62-159 (556)
153 cd03567 VHS_GGA VHS domain fam 90.2 3.3 7.2E-05 36.6 10.0 91 234-335 19-115 (139)
154 KOG1058 Vesicle coat complex C 90.2 12 0.00026 41.7 15.9 155 117-284 25-196 (948)
155 KOG1789 Endocytosis protein RM 90.1 3.6 7.8E-05 47.2 12.2 141 188-338 1739-1885(2235)
156 KOG2032 Uncharacterized conser 90.1 26 0.00057 37.2 17.8 120 168-290 248-372 (533)
157 KOG1058 Vesicle coat complex C 90.0 3.3 7.2E-05 45.8 11.6 29 176-204 136-164 (948)
158 KOG1060 Vesicle coat complex A 89.6 8.5 0.00018 42.9 14.4 159 148-335 50-208 (968)
159 KOG2973 Uncharacterized conser 89.4 2.1 4.5E-05 42.8 8.9 113 218-344 5-119 (353)
160 KOG1020 Sister chromatid cohes 89.2 14 0.00029 44.1 16.2 146 127-290 762-922 (1692)
161 PF01365 RYDR_ITPR: RIH domain 89.1 0.96 2.1E-05 42.1 6.2 96 188-290 75-170 (207)
162 KOG2259 Uncharacterized conser 88.8 0.65 1.4E-05 50.4 5.3 75 167-246 366-440 (823)
163 KOG4535 HEAT and armadillo rep 88.8 1.4 3E-05 46.5 7.4 106 184-289 401-513 (728)
164 PF10363 DUF2435: Protein of u 88.6 2 4.3E-05 35.3 7.0 72 176-249 5-76 (92)
165 PF11701 UNC45-central: Myosin 87.7 3.1 6.6E-05 37.3 8.3 100 182-284 51-154 (157)
166 COG5231 VMA13 Vacuolar H+-ATPa 87.7 0.74 1.6E-05 46.2 4.5 81 165-245 345-428 (432)
167 smart00638 LPD_N Lipoprotein N 87.3 17 0.00036 39.1 15.1 168 133-332 359-541 (574)
168 cd03561 VHS VHS domain family; 87.3 5.4 0.00012 34.6 9.4 92 234-336 18-112 (133)
169 KOG1248 Uncharacterized conser 87.3 43 0.00093 39.1 18.4 107 178-288 657-766 (1176)
170 KOG2999 Regulator of Rac1, req 87.1 11 0.00024 40.6 12.8 156 178-340 87-246 (713)
171 KOG1059 Vesicle coat complex A 87.0 6.6 0.00014 43.3 11.4 178 149-337 125-329 (877)
172 PF04869 Uso1_p115_head: Uso1 86.9 14 0.00031 37.0 13.3 146 186-336 50-231 (312)
173 PF08167 RIX1: rRNA processing 86.8 8.8 0.00019 34.6 10.8 108 176-289 27-143 (165)
174 KOG1566 Conserved protein Mo25 86.7 37 0.00081 34.2 16.3 105 231-340 181-290 (342)
175 PF01347 Vitellogenin_N: Lipop 86.5 7.2 0.00016 42.2 11.8 165 137-332 401-585 (618)
176 PF12719 Cnd3: Nuclear condens 86.5 7.8 0.00017 38.2 11.1 112 216-338 26-145 (298)
177 PF14726 RTTN_N: Rotatin, an a 86.2 5.6 0.00012 33.1 8.3 92 189-283 2-94 (98)
178 KOG4535 HEAT and armadillo rep 86.2 4.4 9.5E-05 42.9 9.3 176 151-335 409-602 (728)
179 PF06025 DUF913: Domain of Unk 86.0 8.9 0.00019 39.5 11.6 161 153-319 4-208 (379)
180 KOG4653 Uncharacterized conser 85.7 51 0.0011 37.4 17.5 189 131-338 727-920 (982)
181 KOG1788 Uncharacterized conser 85.6 1.4 2.9E-05 50.4 5.5 126 238-376 664-803 (2799)
182 COG5209 RCD1 Uncharacterized p 85.5 22 0.00047 34.4 12.8 187 150-345 62-276 (315)
183 PF11865 DUF3385: Domain of un 85.5 9.6 0.00021 34.3 10.3 144 176-335 12-156 (160)
184 COG5181 HSH155 U2 snRNP splice 85.4 9.5 0.00021 41.6 11.5 71 173-246 687-760 (975)
185 cd03569 VHS_Hrs_Vps27p VHS dom 85.4 5.8 0.00013 35.1 8.6 91 234-335 22-113 (142)
186 PF11707 Npa1: Ribosome 60S bi 85.2 34 0.00073 34.4 15.1 159 176-338 58-239 (330)
187 PF05004 IFRD: Interferon-rela 85.1 41 0.0009 33.5 15.5 150 131-288 86-256 (309)
188 COG5218 YCG1 Chromosome conden 85.0 29 0.00062 37.9 14.7 127 147-281 64-191 (885)
189 smart00638 LPD_N Lipoprotein N 84.7 25 0.00054 37.8 14.8 109 186-328 458-570 (574)
190 KOG2676 Uncharacterized conser 84.2 0.98 2.1E-05 45.8 3.4 64 193-256 375-440 (478)
191 COG5116 RPN2 26S proteasome re 84.1 21 0.00046 38.7 13.2 149 181-367 523-672 (926)
192 PF01347 Vitellogenin_N: Lipop 83.9 6.1 0.00013 42.7 9.7 120 176-329 488-615 (618)
193 KOG1240 Protein kinase contain 83.2 23 0.00049 41.5 13.8 69 260-337 658-726 (1431)
194 KOG0213 Splicing factor 3b, su 83.2 81 0.0017 35.5 17.3 191 132-337 637-829 (1172)
195 KOG2933 Uncharacterized conser 83.1 8.9 0.00019 38.4 9.5 141 129-288 86-233 (334)
196 KOG1991 Nuclear transport rece 82.6 22 0.00047 40.7 13.2 112 216-340 410-536 (1010)
197 smart00288 VHS Domain present 82.4 7 0.00015 34.0 7.8 90 235-335 19-110 (133)
198 cd03565 VHS_Tom1 VHS domain fa 82.3 22 0.00049 31.3 11.0 72 176-247 40-117 (141)
199 PF12830 Nipped-B_C: Sister ch 82.2 4.7 0.0001 37.1 7.0 67 176-250 10-79 (187)
200 PF08324 PUL: PUL domain; Int 81.7 11 0.00023 36.3 9.6 178 102-289 33-231 (268)
201 PF14500 MMS19_N: Dos2-interac 81.6 21 0.00044 34.9 11.5 143 179-337 4-154 (262)
202 KOG1943 Beta-tubulin folding c 81.2 37 0.0008 39.3 14.5 141 185-336 555-705 (1133)
203 PF07814 WAPL: Wings apart-lik 81.2 53 0.0011 33.5 14.8 83 185-268 33-116 (361)
204 KOG0567 HEAT repeat-containing 80.2 64 0.0014 31.9 17.3 164 174-353 67-264 (289)
205 PF08167 RIX1: rRNA processing 80.1 21 0.00046 32.1 10.4 114 217-337 26-144 (165)
206 cd03568 VHS_STAM VHS domain fa 80.0 5.5 0.00012 35.3 6.4 90 236-336 20-110 (144)
207 KOG1967 DNA repair/transcripti 79.7 5.3 0.00011 45.1 7.3 106 175-283 910-1018(1030)
208 PF13764 E3_UbLigase_R4: E3 ub 79.4 18 0.00039 40.9 11.5 124 166-290 109-259 (802)
209 COG5209 RCD1 Uncharacterized p 79.3 14 0.00031 35.6 9.1 97 150-246 117-219 (315)
210 KOG2274 Predicted importin 9 [ 79.2 28 0.00061 39.5 12.6 126 135-261 575-705 (1005)
211 KOG1943 Beta-tubulin folding c 79.0 75 0.0016 36.9 15.9 154 174-337 341-501 (1133)
212 KOG3665 ZYG-1-like serine/thre 78.4 35 0.00076 38.1 13.3 120 239-367 494-614 (699)
213 PF00790 VHS: VHS domain; Int 78.3 8.1 0.00017 33.8 6.8 107 218-335 6-117 (140)
214 PF14225 MOR2-PAG1_C: Cell mor 77.5 44 0.00095 32.7 12.3 147 166-338 103-256 (262)
215 PF11707 Npa1: Ribosome 60S bi 77.5 82 0.0018 31.6 17.1 161 187-364 39-215 (330)
216 PF14668 RICTOR_V: Rapamycin-i 77.4 7.4 0.00016 30.6 5.6 68 233-308 4-71 (73)
217 cd00197 VHS_ENTH_ANTH VHS, ENT 77.2 17 0.00036 30.4 8.2 91 234-335 18-114 (115)
218 PF11791 Aconitase_B_N: Aconit 76.9 7.7 0.00017 34.9 6.2 104 129-247 20-125 (154)
219 PF10363 DUF2435: Protein of u 76.5 8.7 0.00019 31.5 6.1 68 218-289 5-72 (92)
220 KOG1832 HIV-1 Vpr-binding prot 76.2 4.8 0.0001 45.4 5.6 151 149-306 568-784 (1516)
221 PF06012 DUF908: Domain of Unk 76.2 13 0.00027 37.5 8.4 63 189-252 237-304 (329)
222 KOG2062 26S proteasome regulat 75.9 15 0.00031 40.9 9.1 116 185-324 566-682 (929)
223 KOG0414 Chromosome condensatio 75.9 26 0.00057 40.8 11.5 140 173-334 917-1062(1251)
224 COG5240 SEC21 Vesicle coat com 75.8 29 0.00063 37.8 11.1 147 131-288 375-554 (898)
225 KOG2137 Protein kinase [Signal 75.8 58 0.0013 36.1 13.7 134 172-320 387-521 (700)
226 KOG1240 Protein kinase contain 75.4 19 0.00041 42.1 10.2 105 181-289 429-537 (1431)
227 KOG2062 26S proteasome regulat 75.1 47 0.001 37.2 12.6 154 173-367 517-675 (929)
228 PF08569 Mo25: Mo25-like; Int 75.1 45 0.00097 33.8 12.0 139 150-290 140-284 (335)
229 PF04063 DUF383: Domain of unk 74.8 29 0.00064 32.3 9.9 126 184-318 5-158 (192)
230 KOG4151 Myosin assembly protei 74.6 23 0.00049 39.5 10.3 133 152-288 561-698 (748)
231 KOG2611 Neurochondrin/leucine- 73.0 39 0.00085 36.0 11.0 122 218-345 13-149 (698)
232 COG5215 KAP95 Karyopherin (imp 73.0 1.5E+02 0.0033 32.5 16.2 154 182-339 374-532 (858)
233 KOG1967 DNA repair/transcripti 72.7 69 0.0015 36.6 13.4 208 114-329 798-1017(1030)
234 COG5098 Chromosome condensatio 72.3 28 0.0006 38.7 10.0 105 176-289 301-415 (1128)
235 COG5656 SXM1 Importin, protein 72.1 1.8E+02 0.0039 32.9 16.4 89 175-268 461-549 (970)
236 PF14663 RasGEF_N_2: Rapamycin 71.7 12 0.00026 31.8 6.0 40 175-215 9-48 (115)
237 PF14726 RTTN_N: Rotatin, an a 71.3 33 0.00072 28.5 8.4 84 148-232 2-87 (98)
238 PF08506 Cse1: Cse1; InterPro 70.5 39 0.00085 34.7 10.5 132 186-331 223-370 (370)
239 KOG1243 Protein kinase [Genera 70.1 34 0.00073 37.8 10.2 130 146-289 267-398 (690)
240 PF11791 Aconitase_B_N: Aconit 69.4 16 0.00036 32.8 6.5 96 101-202 15-122 (154)
241 COG5215 KAP95 Karyopherin (imp 69.1 1.9E+02 0.004 31.9 19.7 197 130-337 38-251 (858)
242 COG5116 RPN2 26S proteasome re 68.2 27 0.00059 37.9 8.8 99 174-290 551-651 (926)
243 KOG1243 Protein kinase [Genera 66.9 36 0.00079 37.5 9.7 72 171-245 327-398 (690)
244 KOG0915 Uncharacterized conser 66.7 1.8E+02 0.0039 35.3 15.6 217 113-339 941-1163(1702)
245 KOG1077 Vesicle coat complex A 66.5 1.1E+02 0.0023 34.3 13.0 145 175-339 75-219 (938)
246 KOG2199 Signal transducing ada 66.1 40 0.00087 34.9 9.2 86 137-227 13-99 (462)
247 PF08324 PUL: PUL domain; Int 65.6 1.3E+02 0.0028 28.8 16.8 176 176-359 65-253 (268)
248 KOG0211 Protein phosphatase 2A 65.2 2.1E+02 0.0045 32.4 15.4 171 110-289 173-345 (759)
249 KOG4464 Signaling protein RIC- 64.2 95 0.002 32.6 11.5 82 186-270 109-199 (532)
250 PF10521 DUF2454: Protein of u 64.2 96 0.0021 30.3 11.5 45 175-219 120-165 (282)
251 PF08216 CTNNBL: Catenin-beta- 64.1 9.8 0.00021 32.3 3.8 42 151-192 64-105 (108)
252 PF04869 Uso1_p115_head: Uso1 63.9 1.7E+02 0.0036 29.5 15.3 144 145-288 50-230 (312)
253 cd03565 VHS_Tom1 VHS domain fa 63.2 74 0.0016 28.0 9.5 91 235-335 20-114 (141)
254 COG5240 SEC21 Vesicle coat com 62.9 45 0.00097 36.4 9.2 93 146-243 444-553 (898)
255 KOG0413 Uncharacterized conser 62.4 25 0.00053 40.4 7.5 68 216-289 1006-1073(1529)
256 KOG1060 Vesicle coat complex A 61.8 50 0.0011 37.2 9.6 141 177-338 395-535 (968)
257 KOG4151 Myosin assembly protei 61.6 71 0.0015 35.8 10.8 132 198-337 566-700 (748)
258 COG5098 Chromosome condensatio 60.7 73 0.0016 35.6 10.4 140 218-366 301-454 (1128)
259 PF08389 Xpo1: Exportin 1-like 60.3 25 0.00055 29.8 6.0 80 112-198 67-148 (148)
260 PF12397 U3snoRNP10: U3 small 59.6 1.1E+02 0.0023 25.8 9.8 69 175-247 7-76 (121)
261 KOG2025 Chromosome condensatio 59.1 2.5E+02 0.0054 31.6 14.1 130 190-338 62-192 (892)
262 PF13001 Ecm29: Proteasome sta 58.5 40 0.00086 36.0 8.2 83 168-252 364-450 (501)
263 PF12530 DUF3730: Protein of u 56.9 1.8E+02 0.0039 27.6 13.9 140 176-336 2-151 (234)
264 KOG0211 Protein phosphatase 2A 56.1 1.5E+02 0.0032 33.5 12.3 140 181-336 525-664 (759)
265 PF07814 WAPL: Wings apart-lik 55.4 1E+02 0.0022 31.4 10.3 81 259-346 22-103 (361)
266 KOG2676 Uncharacterized conser 55.3 7.2 0.00016 39.8 1.8 55 236-290 376-430 (478)
267 KOG0567 HEAT repeat-containing 54.9 2.3E+02 0.0049 28.1 14.1 60 259-334 219-278 (289)
268 cd00197 VHS_ENTH_ANTH VHS, ENT 54.6 1.2E+02 0.0027 25.0 10.3 67 176-242 39-112 (115)
269 KOG1078 Vesicle coat complex C 53.6 84 0.0018 35.3 9.6 145 131-288 354-531 (865)
270 KOG2032 Uncharacterized conser 53.4 1.2E+02 0.0025 32.6 10.3 168 214-393 252-431 (533)
271 PF08506 Cse1: Cse1; InterPro 53.0 1.2E+02 0.0027 31.0 10.4 94 142-240 264-370 (370)
272 KOG1078 Vesicle coat complex C 52.9 1.3E+02 0.0027 34.1 10.8 94 146-244 423-531 (865)
273 PF10521 DUF2454: Protein of u 51.1 1.1E+02 0.0023 30.0 9.3 118 217-335 120-252 (282)
274 PF01603 B56: Protein phosphat 49.9 2.2E+02 0.0049 29.5 11.9 96 152-248 109-207 (409)
275 KOG1020 Sister chromatid cohes 49.3 4.3E+02 0.0092 32.4 14.7 137 189-337 1136-1296(1692)
276 cd03562 CID CID (CTD-Interacti 49.3 90 0.002 25.8 7.4 89 185-285 16-104 (114)
277 KOG1820 Microtubule-associated 48.4 32 0.0007 39.0 5.7 73 176-248 373-446 (815)
278 KOG1087 Cytosolic sorting prot 48.3 86 0.0019 33.4 8.6 66 177-242 41-109 (470)
279 KOG2137 Protein kinase [Signal 47.1 4.1E+02 0.009 29.7 13.6 117 147-270 403-520 (700)
280 KOG1525 Sister chromatid cohes 46.9 39 0.00085 40.1 6.3 145 173-337 258-406 (1266)
281 PF04388 Hamartin: Hamartin pr 46.8 1.3E+02 0.0029 33.3 10.2 58 230-288 82-139 (668)
282 PF12830 Nipped-B_C: Sister ch 46.3 2.3E+02 0.0051 25.8 13.3 115 134-255 11-132 (187)
283 KOG2611 Neurochondrin/leucine- 44.8 4.4E+02 0.0095 28.5 15.7 133 179-318 16-163 (698)
284 KOG0413 Uncharacterized conser 44.3 96 0.0021 35.9 8.4 107 217-335 577-684 (1529)
285 KOG2956 CLIP-associating prote 43.9 4.4E+02 0.0094 28.2 13.3 143 132-289 330-477 (516)
286 cd03572 ENTH_epsin_related ENT 42.4 1.7E+02 0.0037 25.3 8.1 91 235-336 20-119 (122)
287 KOG1791 Uncharacterized conser 42.2 5.2E+02 0.011 31.7 14.0 220 169-394 1434-1730(1758)
288 PF04499 SAPS: SIT4 phosphatas 41.7 49 0.0011 35.2 5.6 41 298-338 53-94 (475)
289 PF04063 DUF383: Domain of unk 41.5 1.8E+02 0.0039 27.0 8.8 58 188-246 72-133 (192)
290 PF04510 DUF577: Family of unk 41.2 2.9E+02 0.0063 25.5 9.9 88 177-270 6-96 (174)
291 KOG2073 SAP family cell cycle 39.8 2.2E+02 0.0047 32.6 10.4 92 163-267 146-248 (838)
292 KOG1949 Uncharacterized conser 39.8 2.2E+02 0.0048 32.0 10.1 169 180-364 180-356 (1005)
293 PF01365 RYDR_ITPR: RIH domain 39.7 1.2E+02 0.0027 27.9 7.4 121 205-337 32-170 (207)
294 KOG0414 Chromosome condensatio 39.6 2.6E+02 0.0056 33.1 11.0 113 218-339 314-431 (1251)
295 PF13251 DUF4042: Domain of un 39.6 65 0.0014 29.8 5.5 68 178-248 105-177 (182)
296 PF10257 RAI16-like: Retinoic 39.6 3.6E+02 0.0077 27.4 11.3 136 173-316 8-181 (353)
297 KOG3665 ZYG-1-like serine/thre 39.5 2E+02 0.0044 32.2 10.2 160 162-328 501-689 (699)
298 PF04388 Hamartin: Hamartin pr 39.5 4.3E+02 0.0092 29.5 12.7 67 187-253 81-148 (668)
299 KOG2274 Predicted importin 9 [ 39.4 6.7E+02 0.014 29.1 17.8 198 149-359 507-714 (1005)
300 KOG4653 Uncharacterized conser 39.0 1.9E+02 0.0041 33.1 9.6 71 178-249 731-801 (982)
301 KOG0301 Phospholipase A2-activ 38.7 6E+02 0.013 28.4 17.2 193 150-360 522-727 (745)
302 PF08216 CTNNBL: Catenin-beta- 37.9 44 0.00096 28.4 3.7 39 235-274 65-103 (108)
303 PF09758 FPL: Uncharacterised 37.7 2.1E+02 0.0046 25.6 8.2 128 202-334 12-147 (149)
304 PF06012 DUF908: Domain of Unk 37.4 1.1E+02 0.0024 30.7 7.2 51 296-346 252-307 (329)
305 smart00802 UME Domain in UVSB 37.4 2.3E+02 0.0049 23.9 7.9 71 132-206 12-86 (107)
306 PF14663 RasGEF_N_2: Rapamycin 36.8 2.2E+02 0.0048 24.0 7.9 78 308-389 9-90 (115)
307 PF13001 Ecm29: Proteasome sta 36.8 1.9E+02 0.0041 30.8 9.2 161 120-289 260-443 (501)
308 PF08623 TIP120: TATA-binding 36.3 91 0.002 28.5 5.7 76 147-226 41-116 (169)
309 KOG2038 CAATT-binding transcri 35.6 7.2E+02 0.016 28.4 14.9 66 217-289 305-370 (988)
310 KOG1822 Uncharacterized conser 35.1 1.7E+02 0.0037 36.2 9.0 111 175-289 877-988 (2067)
311 PF14225 MOR2-PAG1_C: Cell mor 34.9 1.9E+02 0.0041 28.3 8.1 84 114-203 167-254 (262)
312 PF06685 DUF1186: Protein of u 34.6 2E+02 0.0044 28.0 8.2 71 173-255 72-152 (249)
313 PF09324 DUF1981: Domain of un 34.0 90 0.0019 25.0 4.8 55 304-363 14-69 (86)
314 smart00567 EZ_HEAT E-Z type HE 33.2 54 0.0012 20.4 2.7 28 189-227 2-29 (30)
315 KOG0915 Uncharacterized conser 32.5 6.3E+02 0.014 31.0 12.8 119 148-269 1054-1183(1702)
316 KOG2199 Signal transducing ada 31.8 1.9E+02 0.0042 30.1 7.7 91 235-336 27-118 (462)
317 PF03130 HEAT_PBS: PBS lyase H 31.2 23 0.00049 22.0 0.7 26 190-226 1-26 (27)
318 PLN03076 ARF guanine nucleotid 31.1 4.4E+02 0.0096 32.9 11.8 129 150-289 1109-1253(1780)
319 PLN03205 ATR interacting prote 31.0 4.6E+02 0.01 27.7 10.3 163 175-338 324-518 (652)
320 PF07571 DUF1546: Protein of u 30.2 2.3E+02 0.005 22.9 6.7 52 187-243 19-76 (92)
321 PF07923 N1221: N1221-like pro 30.1 83 0.0018 31.0 4.8 61 167-227 53-127 (293)
322 PF12783 Sec7_N: Guanine nucle 29.8 3.9E+02 0.0085 23.6 9.6 101 188-289 36-146 (168)
323 COG5656 SXM1 Importin, protein 29.6 5.2E+02 0.011 29.4 10.9 112 174-290 408-529 (970)
324 PF13925 Katanin_con80: con80 29.3 3.7E+02 0.008 24.1 8.6 41 216-256 69-109 (164)
325 KOG2549 Transcription initiati 29.1 7.8E+02 0.017 26.9 11.9 124 115-243 207-368 (576)
326 KOG1924 RhoA GTPase effector D 28.9 9.4E+02 0.02 27.6 17.0 129 234-366 210-352 (1102)
327 PF13764 E3_UbLigase_R4: E3 ub 28.2 9.5E+02 0.021 27.5 19.4 185 128-317 117-329 (802)
328 KOG2038 CAATT-binding transcri 27.9 2.9E+02 0.0063 31.4 8.7 62 184-250 314-375 (988)
329 PF11935 DUF3453: Domain of un 27.7 2.7E+02 0.0058 26.6 7.8 55 200-254 95-154 (239)
330 PF12463 DUF3689: Protein of u 27.3 6.5E+02 0.014 25.3 14.2 129 208-340 1-177 (303)
331 PF04821 TIMELESS: Timeless pr 27.3 3.9E+02 0.0085 25.9 8.9 172 148-338 9-210 (266)
332 PF12783 Sec7_N: Guanine nucle 26.7 4.5E+02 0.0097 23.2 9.9 85 169-256 68-157 (168)
333 PF09324 DUF1981: Domain of un 26.6 1.7E+02 0.0037 23.3 5.3 48 217-269 18-66 (86)
334 PF11894 DUF3414: Protein of u 26.5 8E+02 0.017 30.5 13.1 62 188-249 578-643 (1691)
335 smart00582 RPR domain present 25.9 2.2E+02 0.0049 23.5 6.2 62 178-249 4-65 (121)
336 PRK14707 hypothetical protein; 25.8 1.6E+03 0.034 29.2 16.2 175 148-333 810-988 (2710)
337 PF06685 DUF1186: Protein of u 25.3 6.4E+02 0.014 24.5 13.2 92 186-305 54-153 (249)
338 KOG1087 Cytosolic sorting prot 25.2 1.9E+02 0.0042 30.7 6.7 71 217-287 39-110 (470)
339 PF14500 MMS19_N: Dos2-interac 25.2 2.6E+02 0.0056 27.2 7.2 65 221-288 4-68 (262)
340 TIGR00117 acnB aconitate hydra 25.0 2.7E+02 0.0059 31.8 8.1 102 129-244 23-125 (844)
341 PF01465 GRIP: GRIP domain; I 24.8 1.6E+02 0.0035 20.8 4.3 33 311-343 11-43 (46)
342 PF12055 DUF3536: Domain of un 24.1 5.6E+02 0.012 25.5 9.3 101 145-251 66-181 (285)
343 KOG4464 Signaling protein RIC- 23.8 7E+02 0.015 26.4 10.1 101 230-338 111-233 (532)
344 PF12074 DUF3554: Domain of un 23.3 1.9E+02 0.0042 28.8 6.1 76 146-226 175-254 (339)
345 PF11864 DUF3384: Domain of un 23.1 8.9E+02 0.019 25.4 17.0 108 112-226 6-117 (464)
346 cd08050 TAF6 TATA Binding Prot 23.0 7.9E+02 0.017 24.8 13.2 130 104-243 171-338 (343)
347 PF12911 OppC_N: N-terminal TM 22.8 96 0.0021 22.2 2.9 23 4-26 13-35 (56)
348 PF07923 N1221: N1221-like pro 22.4 1.7E+02 0.0036 28.9 5.4 52 217-268 61-126 (293)
349 cd03572 ENTH_epsin_related ENT 22.2 5.2E+02 0.011 22.3 9.0 87 197-288 24-118 (122)
350 PF08454 RIH_assoc: RyR and IP 21.2 1.6E+02 0.0035 24.8 4.3 44 184-227 63-107 (109)
351 PF12074 DUF3554: Domain of un 20.8 8.3E+02 0.018 24.2 13.5 192 131-339 22-238 (339)
352 KOG1832 HIV-1 Vpr-binding prot 20.8 1.8E+02 0.0039 33.6 5.5 117 148-265 624-797 (1516)
353 PF12612 TFCD_C: Tubulin foldi 20.5 3.4E+02 0.0074 24.8 6.7 16 188-203 21-36 (193)
354 PRK13150 cytochrome c-type bio 20.4 1.2E+02 0.0025 27.6 3.4 39 1-43 1-39 (159)
355 PF08389 Xpo1: Exportin 1-like 20.3 3E+02 0.0066 23.0 6.0 64 259-331 83-148 (148)
356 TIGR02302 aProt_lowcomp conser 20.2 1.7E+02 0.0036 33.6 5.3 21 104-124 519-539 (851)
357 PF09450 DUF2019: Domain of un 20.2 73 0.0016 27.0 1.9 23 176-198 49-71 (106)
358 PLN03205 ATR interacting prote 20.2 1.9E+02 0.004 30.5 5.2 119 217-338 324-448 (652)
359 PRK13159 cytochrome c-type bio 20.1 1.3E+02 0.0027 27.3 3.6 40 1-44 1-40 (155)
360 PF10193 Telomere_reg-2: Telom 20.1 4.6E+02 0.0099 22.1 6.9 100 131-241 3-111 (114)
No 1
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-45 Score=359.05 Aligned_cols=311 Identities=33% Similarity=0.455 Sum_probs=269.0
Q ss_pred CCCChHHHHHHHhhcC--CCccccch--------hhccCCCCHHHHHHhHHHHHHHHHHcC---------CCCHHHHHHH
Q 015709 75 GFSSIDGMLQWAIGHS--DPAKLKET--------AQDVQRLSPSELKKRQMEIKELMEKLK---------TPSDAQLIQI 135 (402)
Q Consensus 75 ~~~~~~gLLkwsi~~s--d~~~~~~~--------~~~~~~~s~e~l~~r~~~L~ea~~~l~---------~~~d~~lMk~ 135 (402)
..++|+|+++|+..++ .|+++... ..+.+ ++ +.|++|+.++|..-+ +......|+.
T Consensus 10 ~~~~~~gl~~ws~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---ke~~k~~~e~~~~~~e~~k~~~~~~~~~~~~~~~ 84 (342)
T KOG2160|consen 10 RPPNQEGLLEWSLQLSQSLGSRPDIQISGDLGMAEAKLK--DE---KEDRKWLQELMQAHTEDQKDFVEDMKVISDVMSM 84 (342)
T ss_pred cCccccchhhcccccccccCCCchhhhccchhhhhhhcc--Cc---ccchHHHHHHHHHhhhhhhhhcccchhHHHHHHh
Confidence 3678999999999998 55553211 01111 11 458999998887643 1222345555
Q ss_pred -HHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHH
Q 015709 136 -AIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLE 214 (402)
Q Consensus 136 -al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le 214 (402)
++..+++++.++++|+.||++|+++||+||||++|+++|||++++.+|+++++++|+.|+|+||+++||||++|+.+++
T Consensus 85 ~~~~~~~~~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E 164 (342)
T KOG2160|consen 85 IPIVILNSSSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIE 164 (342)
T ss_pred hhhhccCcccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 7777888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccc
Q 015709 215 LGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLE 293 (402)
Q Consensus 215 ~g~L~~Ll~LL~s~~-~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~ 293 (402)
.|++++|+.++++++ ..+|.||+||||+++|||++++..|...+|+..|..+|++++.++++|+||++++++|+..
T Consensus 165 ~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~--- 241 (342)
T KOG2160|consen 165 LGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQE--- 241 (342)
T ss_pred cccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHh---
Confidence 999999999999776 4678999999999999999999999999999999999999878999999999999999964
Q ss_pred cCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCcHHHHHHHHHHhHHhhhhhhHhh
Q 015709 294 NMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEEDQRD 373 (402)
Q Consensus 294 ~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~~~L~~L~~~~~~l~~~e~~~~ 373 (402)
+.+....+...|+...+.++..+.+.++.|+++.++..++..-....+.+...++++..|+++.+.+.+.+..+++..
T Consensus 242 --~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~~~~~~~~~~~~l~e~l~~~~q~~~~~~~~~~e~~ 319 (342)
T KOG2160|consen 242 --DKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLSELSTRKELFVSLLNLEELLKSLIQIISDHAALEEERQ 319 (342)
T ss_pred --hhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566778899999999999999999999999999998876443334666688999999999999998888888999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhh
Q 015709 374 YAMDVEALRREVELIFFRKLDD 395 (402)
Q Consensus 374 y~~~l~~~~~e~~~~~~~~~~~ 395 (402)
|++++...+.|+..+|+++++.
T Consensus 320 l~~~l~~~~~e~~~~~~~~~~~ 341 (342)
T KOG2160|consen 320 LVNSLWEICGEVPSILRKLLGS 341 (342)
T ss_pred HHHHHHHHhcccHHHHHHHhcc
Confidence 9999999999999999999975
No 2
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=3e-20 Score=191.69 Aligned_cols=240 Identities=18% Similarity=0.196 Sum_probs=206.8
Q ss_pred HHHHHHHcC---CCC-HHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHccCC-CCchhHHHhcCCHHHHHHhcCCCCHH
Q 015709 117 IKELMEKLK---TPS-DAQLIQIAIDDLNN--STLSLEDSQRALQELLILVEP-IDNANDLSKLGGLSVLVGQLNHPDTD 189 (402)
Q Consensus 117 L~ea~~~l~---~~~-d~~lMk~al~~L~~--~~~t~e~k~~AL~~L~~Lve~-iDnA~~l~~lGgl~~Li~lL~s~~~~ 189 (402)
+.|++..|. .|. +.+.++.++.+|.. ...+++....|+..+.||.+. .|.-..+.+.|+++.|+.+|.++++.
T Consensus 215 ~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~ 294 (514)
T KOG0166|consen 215 ATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPK 294 (514)
T ss_pred HHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcc
Confidence 456777762 244 45889998888754 334678889999999999954 56777889999999999999999999
Q ss_pred HHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhc
Q 015709 190 IRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILG 268 (402)
Q Consensus 190 Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~-~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~ 268 (402)
++..|.+.+|++++.+....+.++..|++|.|..+++... ..++..|+|+|||++.|++...++++++|-++.|+++|+
T Consensus 295 v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~ 374 (514)
T KOG0166|consen 295 VVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQ 374 (514)
T ss_pred cccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHh
Confidence 9999999999999999999999999999999999999544 568888999999999999999999999999999999999
Q ss_pred CCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChhhH------
Q 015709 269 NSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEA------ 342 (402)
Q Consensus 269 s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~~------ 342 (402)
+. +.++|++|+|+|+|++.. +.++...++++.|+++.++++|...|.++...++.++.++....+...
T Consensus 375 ~~--ef~~rKEAawaIsN~ts~----g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~ 448 (514)
T KOG0166|consen 375 TA--EFDIRKEAAWAISNLTSS----GTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNP 448 (514)
T ss_pred cc--chHHHHHHHHHHHhhccc----CCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccH
Confidence 85 799999999999999974 468889999999999999999999999999999999999988754322
Q ss_pred --HHHHhcCCcHHHHHHHHHHhH
Q 015709 343 --LVLKDFCGLDTALERLRQQLQ 363 (402)
Q Consensus 343 --~~~~~~~GL~~~L~~L~~~~~ 363 (402)
..+. ++|..+.++.|+++-+
T Consensus 449 ~~~~IE-e~ggldkiE~LQ~hen 470 (514)
T KOG0166|consen 449 LAIMIE-EAGGLDKIENLQSHEN 470 (514)
T ss_pred HHHHHH-HccChhHHHHhhcccc
Confidence 2445 6666677788877655
No 3
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=9.1e-19 Score=180.76 Aligned_cols=219 Identities=19% Similarity=0.228 Sum_probs=185.8
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHccC-CCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHH
Q 015709 133 IQIAIDDLNNSTLSLEDSQRALQELLILVE-PIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ 211 (402)
Q Consensus 133 Mk~al~~L~~~~~t~e~k~~AL~~L~~Lve-~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~ 211 (402)
+...++.|.... ++.-+..|-..|-++.. ..+..+.+++.|.+|.++.+|.+++..|+..|.|+||+++-..|.+++.
T Consensus 111 v~~lV~~l~~~~-~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~ 189 (514)
T KOG0166|consen 111 VPRLVEFLSRDD-NPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDY 189 (514)
T ss_pred HHHHHHHHccCC-ChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHH
Confidence 445666665432 46778888899988774 4678889999999999999999999999999999999999999999999
Q ss_pred HHHcCcHHHHHHhhcCCCH-HHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015709 212 VLELGALSKLMKMVKSSFV-EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (402)
Q Consensus 212 ~le~g~L~~Ll~LL~s~~~-~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~ 290 (402)
++++|++++|+.++..... .....+.|+|||++||..|.-..-.-...++.|..++++. |..+...|+|+|+||+.
T Consensus 190 vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~--D~~Vl~Da~WAlsyLsd- 266 (514)
T KOG0166|consen 190 VLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHST--DEEVLTDACWALSYLTD- 266 (514)
T ss_pred HHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHhc-
Confidence 9999999999999998765 6789999999999999644333333467899999999986 77899999999999984
Q ss_pred ccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCcHHHHHHHHH
Q 015709 291 QLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQ 360 (402)
Q Consensus 291 ~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~~~L~~L~~ 360 (402)
..++..+.+++.|+++.|+++|.+.+..++-.|++++.+++..++...+.+- .+|+.+.|..|-+
T Consensus 267 ----g~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi-~~~~L~~l~~ll~ 331 (514)
T KOG0166|consen 267 ----GSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVI-NSGALPVLSNLLS 331 (514)
T ss_pred ----CChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHH-hcChHHHHHHHhc
Confidence 4678889999999999999999999999999999999999999888778877 5555555444443
No 4
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.76 E-value=5.8e-18 Score=165.32 Aligned_cols=221 Identities=18% Similarity=0.162 Sum_probs=193.4
Q ss_pred HHHHHHcC-C---CCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHccCCC-CchhHHHhcCCHHHHHHhcCCCCHHH
Q 015709 118 KELMEKLK-T---PSDAQLIQIAIDDLNN--STLSLEDSQRALQELLILVEPI-DNANDLSKLGGLSVLVGQLNHPDTDI 190 (402)
Q Consensus 118 ~ea~~~l~-~---~~d~~lMk~al~~L~~--~~~t~e~k~~AL~~L~~Lve~i-DnA~~l~~lGgl~~Li~lL~s~~~~I 190 (402)
.|.+..+. + |.+-..|.+++.+|.. .+.++|....|+..+.++++-. +....+.+.|-.+.|+.+|.|++..|
T Consensus 222 TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~i 301 (526)
T COG5064 222 TWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKI 301 (526)
T ss_pred HHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccc
Confidence 35566652 2 4466788888888754 2347788999999999999865 34456778888899999999999999
Q ss_pred HHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCC
Q 015709 191 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS 270 (402)
Q Consensus 191 r~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~ 270 (402)
+..|.+.+|+++..+....+.++..|+++.+..+|++....+|+.|+|.|||++.++....+++++++-+++|+++|.+-
T Consensus 302 qtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~a 381 (526)
T COG5064 302 QTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSA 381 (526)
T ss_pred cCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHH
Confidence 99999999999999998888899999999999999998889999999999999999999999999999999999999984
Q ss_pred CccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChhhH
Q 015709 271 SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEA 342 (402)
Q Consensus 271 ~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~~ 342 (402)
+.++|..|+|+++|...+. ...|+....++++|+++.|+++|...|..+.|.+|.++.+++..++..+
T Consensus 382 --e~k~kKEACWAisNatsgg--~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~ 449 (526)
T COG5064 382 --EYKIKKEACWAISNATSGG--LNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDR 449 (526)
T ss_pred --HHHHHHHHHHHHHhhhccc--cCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHH
Confidence 8999999999999988754 2457888899999999999999999999999999999999998875544
No 5
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.76 E-value=7e-17 Score=187.46 Aligned_cols=221 Identities=19% Similarity=0.161 Sum_probs=176.8
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHccCCC-CchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHH
Q 015709 135 IAIDDLNNSTLSLEDSQRALQELLILVEPI-DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVL 213 (402)
Q Consensus 135 ~al~~L~~~~~t~e~k~~AL~~L~~Lve~i-DnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~l 213 (402)
.+++.|.++ +.+.+..|+..|..+.... ++...+.+.||+|+|+++|.+++..+|..|+|+|+|++.+++.+|..+.
T Consensus 450 ~LV~LL~s~--s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~ 527 (2102)
T PLN03200 450 LLISLLGLS--SEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVE 527 (2102)
T ss_pred HHHHHHcCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence 344555553 4577888899999988644 5778899999999999999999999999999999999998777777777
Q ss_pred HcCcHHHHHHhhcCCCHHHHHHHHHHHHHHh-------------------------------------------------
Q 015709 214 ELGALSKLMKMVKSSFVEEAVKALYTVSSLI------------------------------------------------- 244 (402)
Q Consensus 214 e~g~L~~Ll~LL~s~~~~vr~kAl~ALS~Li------------------------------------------------- 244 (402)
+.|++|+|+++|++.+..++..|+|||++++
T Consensus 528 ~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~ 607 (2102)
T PLN03200 528 SAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAA 607 (2102)
T ss_pred HCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhc
Confidence 7788888888887766666666666666664
Q ss_pred ------------------------------cCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhccccc
Q 015709 245 ------------------------------RNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLEN 294 (402)
Q Consensus 245 ------------------------------R~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~ 294 (402)
.+++...+.++..||+++|+.+|++. +..+++.|+|+|.+|+..
T Consensus 608 ~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~--~~~v~keAA~AL~nL~~~---- 681 (2102)
T PLN03200 608 NDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNN--TEAVATQSARALAALSRS---- 681 (2102)
T ss_pred cccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcC--ChHHHHHHHHHHHHHHhC----
Confidence 33344455666778888888888875 556889999999999863
Q ss_pred CCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCcHHHHHHHHHHhHH
Q 015709 295 MHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQE 364 (402)
Q Consensus 295 ~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~~~L~~L~~~~~~ 364 (402)
.+...+..+++.|+++.|+++|++.|.++++.++.+|.+++.+++ .+..+.+.+++.++.+.||+...+
T Consensus 682 ~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e-~~~ei~~~~~I~~Lv~lLr~G~~~ 750 (2102)
T PLN03200 682 IKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPE-VAAEALAEDIILPLTRVLREGTLE 750 (2102)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCch-HHHHHHhcCcHHHHHHHHHhCChH
Confidence 344556678899999999999999999999999999999999986 556666688998998888877654
No 6
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.76 E-value=7.3e-17 Score=187.35 Aligned_cols=217 Identities=12% Similarity=0.072 Sum_probs=183.3
Q ss_pred CHHHHHHHHHHHHHccCC-CCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHh
Q 015709 146 SLEDSQRALQELLILVEP-IDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 224 (402)
Q Consensus 146 t~e~k~~AL~~L~~Lve~-iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~L 224 (402)
+.|.+..+...|.+++.+ .++...+.+.||+++|+++|.++++.+|..|+|+|++++.+|+..+..+++.|++|+|+++
T Consensus 417 ~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~L 496 (2102)
T PLN03200 417 TADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQL 496 (2102)
T ss_pred CHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHH
Confidence 468899999999999955 6778899999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcc-----------cc
Q 015709 225 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ-----------LE 293 (402)
Q Consensus 225 L~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~-----------l~ 293 (402)
|++++..++..|+|||+|++.+.+..+..+.++|++++|+++|+++ +.+.|..|+++|.+|+... +.
T Consensus 497 L~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sg--d~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLl 574 (2102)
T PLN03200 497 LETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNG--GPKGQEIAAKTLTKLVRTADAATISQLTALLL 574 (2102)
T ss_pred HcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHhccchhHHHHHHHHhc
Confidence 9999999999999999999987656566666899999999999986 6789999999999997421 00
Q ss_pred cCCCC---------------------cchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCcH
Q 015709 294 NMHKV---------------------EPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLD 352 (402)
Q Consensus 294 ~~~~~---------------------~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~ 352 (402)
..++. ........|.++.|+++|.+++...++.|+.+|.+++....+..+.+-..+++.
T Consensus 575 sdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIp 654 (2102)
T PLN03200 575 GDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIIN 654 (2102)
T ss_pred CCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHH
Confidence 00000 011112468999999999999999999999999999998766555555589999
Q ss_pred HHHHHHHHHhHH
Q 015709 353 TALERLRQQLQE 364 (402)
Q Consensus 353 ~~L~~L~~~~~~ 364 (402)
+.+..|+..-.+
T Consensus 655 PLV~LLss~~~~ 666 (2102)
T PLN03200 655 PCIKLLTNNTEA 666 (2102)
T ss_pred HHHHHHhcCChH
Confidence 999999876544
No 7
>PF08609 Fes1: Nucleotide exchange factor Fes1; InterPro: IPR013918 Fes1 is a cytosolic homologue of Sls1, an ER protein which has nucleotide exchange factor activity. Fes1 in yeast has been shown to bind to the molecular chaperone Hsp70 and has adenyl-nucleotide exchange factor activity [].
Probab=99.75 E-value=1.8e-18 Score=141.90 Aligned_cols=89 Identities=34% Similarity=0.533 Sum_probs=70.6
Q ss_pred CChHHHHHHHhhcCCCccccchhhccCCCCHHHHHHhHHHHHHHHHHc-CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q 015709 77 SSIDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKL-KTPSDAQLIQIAIDDLNNSTLSLEDSQRALQ 155 (402)
Q Consensus 77 ~~~~gLLkwsi~~sd~~~~~~~~~~~~~~s~e~l~~r~~~L~ea~~~l-~~~~d~~lMk~al~~L~~~~~t~e~k~~AL~ 155 (402)
++|+|||||||+||+++...... ...++.+ .|+++..++|+.+ ++|+|+++||+++++|.+++.+.|+|+.||+
T Consensus 3 ~~l~~LLkWsI~ns~~~~~~~~~-~~~~~~~----~~~~l~~~~L~~l~~~~sda~lMK~a~~vl~~~~~t~edk~~Ald 77 (92)
T PF08609_consen 3 PNLNGLLKWSIENSTTSASDAPP-SAEQPDE----ERRQLDPEALDALFGGPSDAELMKEAMEVLEDPEVTLEDKLIALD 77 (92)
T ss_pred HHHHHHHHHHHHcCCCCcccccc-CcCCchh----hhhhccHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 57999999999999544422111 1122222 2566777777665 6999999999999999999999999999999
Q ss_pred HHHHccCCCCchhHH
Q 015709 156 ELLILVEPIDNANDL 170 (402)
Q Consensus 156 ~L~~Lve~iDnA~~l 170 (402)
+|++|||+|||||++
T Consensus 78 ~le~LVE~IDNANnl 92 (92)
T PF08609_consen 78 NLEELVENIDNANNL 92 (92)
T ss_pred HHHHHHHcccccccC
Confidence 999999999999985
No 8
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.72 E-value=2.7e-17 Score=160.64 Aligned_cols=204 Identities=18% Similarity=0.230 Sum_probs=169.2
Q ss_pred HHHHHHHHHccCCC-CchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCC
Q 015709 151 QRALQELLILVEPI-DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF 229 (402)
Q Consensus 151 ~~AL~~L~~Lve~i-DnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~ 229 (402)
..|-..|-++..-. +-....++.|++|.++++|.+++.+||.+|.|+||+++-..+.+++.+++.|++.+|+.++.+..
T Consensus 133 fEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~ 212 (526)
T COG5064 133 FEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSA 212 (526)
T ss_pred HHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhcc
Confidence 35556666655443 44567788999999999999999999999999999999999999999999999999999999876
Q ss_pred H--HHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCC
Q 015709 230 V--EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRF 307 (402)
Q Consensus 230 ~--~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g 307 (402)
. ++...+.|.|||++|+..|.-..=.-.-.++.|..++.+. |+.+-..|+|+|+||.. ...+....+.+.|
T Consensus 213 ~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~--D~evlvDA~WAiSYlsD-----g~~E~i~avld~g 285 (526)
T COG5064 213 IHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSR--DPEVLVDACWAISYLSD-----GPNEKIQAVLDVG 285 (526)
T ss_pred chHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhc--CHHHHHHHHHHHHHhcc-----CcHHHHHHHHhcC
Confidence 5 5678999999999999433222222245789999999986 67789999999999984 4567788899999
Q ss_pred cHHHHHHhhcCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCcHHHHHHHHHHh
Q 015709 308 FLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQL 362 (402)
Q Consensus 308 ~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~~~L~~L~~~~ 362 (402)
..+.|+++|.+++..++..+++.+.+++..+....+++- .||..+.+..|-+.-
T Consensus 286 ~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI-~~G~L~a~~~lLs~~ 339 (526)
T COG5064 286 IPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVII-NCGALKAFRSLLSSP 339 (526)
T ss_pred CcHHHHHHhcCccccccCHHHHhhcCeeecCccceehhe-ecccHHHHHHHhcCh
Confidence 999999999999999999999999999998876666666 788877766664433
No 9
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=1.4e-14 Score=142.90 Aligned_cols=201 Identities=19% Similarity=0.240 Sum_probs=171.9
Q ss_pred HHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcC--cHHHHHHhh
Q 015709 148 EDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELG--ALSKLMKMV 225 (402)
Q Consensus 148 e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g--~L~~Ll~LL 225 (402)
..+-.++..|..+.+.-+|.+.++..||+|.|+.+|+++++++|.+++..|++++- ....++...+.+ .+|.|+++.
T Consensus 182 rvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaV-d~~~Rk~Laqaep~lv~~Lv~Lm 260 (550)
T KOG4224|consen 182 RVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAV-DRRARKILAQAEPKLVPALVDLM 260 (550)
T ss_pred hHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhh-hHHHHHHHHhcccchHHHHHHHH
Confidence 45567899999999999999999999999999999999999999999999999996 355777788888 899999999
Q ss_pred cCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHh
Q 015709 226 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD 305 (402)
Q Consensus 226 ~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~ 305 (402)
.++++.++-.|-.||.++..+. .-+..++++|+++.++.+|+++ ..++....+++|.++.. +|-.-..+.+
T Consensus 261 d~~s~kvkcqA~lALrnlasdt-~Yq~eiv~ag~lP~lv~Llqs~--~~plilasVaCIrnisi------hplNe~lI~d 331 (550)
T KOG4224|consen 261 DDGSDKVKCQAGLALRNLASDT-EYQREIVEAGSLPLLVELLQSP--MGPLILASVACIRNISI------HPLNEVLIAD 331 (550)
T ss_pred hCCChHHHHHHHHHHhhhcccc-hhhhHHHhcCCchHHHHHHhCc--chhHHHHHHHHHhhccc------ccCcccceec
Confidence 9999999999999999997654 4577788999999999999987 45577889999999975 3444556789
Q ss_pred CCcHHHHHHhhcCCCh-HHHHHHHHHHHHHhcCChhhHHHHHhcCCcHHHHHHH
Q 015709 306 RFFLKSVVDLTASADL-DLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERL 358 (402)
Q Consensus 306 ~g~v~~Lv~lL~~~d~-dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~~~L~~L 358 (402)
+|+++.||.+|..+|. ++|.+|..+|++|+..++..+.+++..+.+....+.+
T Consensus 332 agfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~ 385 (550)
T KOG4224|consen 332 AGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELL 385 (550)
T ss_pred ccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHH
Confidence 9999999999998754 5999999999999998777888888555554444443
No 10
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=5.4e-15 Score=145.75 Aligned_cols=208 Identities=14% Similarity=0.158 Sum_probs=183.3
Q ss_pred HHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcC
Q 015709 148 EDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS 227 (402)
Q Consensus 148 e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s 227 (402)
.-...+-.++-++.-+.+|.-.+++++|+.+|+.....+..++|..|..||.+++.- ...+..+...|++.+|.++.++
T Consensus 100 ~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLaks 178 (550)
T KOG4224|consen 100 CIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAKS 178 (550)
T ss_pred hhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhccc
Confidence 344566777877888889999999999999999999999999999999999999986 6688889999999999999988
Q ss_pred CCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCC
Q 015709 228 SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRF 307 (402)
Q Consensus 228 ~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g 307 (402)
.+..++..|..||++|+ |...+++.++.+||+++|+.++++. +..+|..++.+|++++. +...+..+.+.+
T Consensus 179 kdirvqrnatgaLlnmT-hs~EnRr~LV~aG~lpvLVsll~s~--d~dvqyycttaisnIaV------d~~~Rk~Laqae 249 (550)
T KOG4224|consen 179 KDIRVQRNATGALLNMT-HSRENRRVLVHAGGLPVLVSLLKSG--DLDVQYYCTTAISNIAV------DRRARKILAQAE 249 (550)
T ss_pred chhhHHHHHHHHHHHhh-hhhhhhhhhhccCCchhhhhhhccC--ChhHHHHHHHHhhhhhh------hHHHHHHHHhcc
Confidence 88899999999999997 4567888999999999999999986 56689999999999985 456777888877
Q ss_pred --cHHHHHHhhcCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCcHHHHHHHHHHhHHhh
Q 015709 308 --FLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVM 366 (402)
Q Consensus 308 --~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~~~L~~L~~~~~~l~ 366 (402)
+++.|++++..+++.++.+|..||.+|+++.+..+...+ .+++...++.||+.+-.+.
T Consensus 250 p~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~-ag~lP~lv~Llqs~~~pli 309 (550)
T KOG4224|consen 250 PKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVE-AGSLPLLVELLQSPMGPLI 309 (550)
T ss_pred cchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHh-cCCchHHHHHHhCcchhHH
Confidence 999999999999999999999999999999877777666 8999888998877665543
No 11
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.54 E-value=1.8e-13 Score=114.04 Aligned_cols=118 Identities=25% Similarity=0.381 Sum_probs=111.3
Q ss_pred HHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh
Q 015709 169 DLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNL 248 (402)
Q Consensus 169 ~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~ 248 (402)
.+++.|+++.|+.+|.++++.+|..|+++|++++.++|.....+++.|++|.|+++++++++.++..|+|+|++++.+.+
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 46789999999999999999999999999999999999999999999999999999999889999999999999999988
Q ss_pred hcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHh
Q 015709 249 AGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLA 288 (402)
Q Consensus 249 ~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~ 288 (402)
.....+...|+++.|.++++++ +.+++..+++++.+|+
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~--~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSS--NEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcC--CHHHHHHHHHHHHHhh
Confidence 8888889999999999999986 6789999999999987
No 12
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.39 E-value=7.5e-12 Score=104.18 Aligned_cols=118 Identities=21% Similarity=0.229 Sum_probs=107.9
Q ss_pred HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015709 211 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (402)
Q Consensus 211 ~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~ 290 (402)
.+++.|+++.|++++.+++..++..++++|++++.+++.....|++.|+++.|..+|.++ +++++..|++++++|+..
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~--~~~v~~~a~~~L~~l~~~ 79 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE--DEEVVKAALWALRNLAAG 79 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC--CHHHHHHHHHHHHHHccC
Confidence 467899999999999998889999999999999999899999999999999999999985 688999999999999853
Q ss_pred ccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHh
Q 015709 291 QLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL 335 (402)
Q Consensus 291 ~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~ 335 (402)
.+.....+.+.|+++.++++|..++.++++.++.+|.+|+
T Consensus 80 -----~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 80 -----PEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred -----cHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 4456677788999999999999999999999999999886
No 13
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.22 E-value=6.3e-10 Score=120.64 Aligned_cols=195 Identities=17% Similarity=0.165 Sum_probs=164.4
Q ss_pred HHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCH
Q 015709 151 QRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFV 230 (402)
Q Consensus 151 ~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~ 230 (402)
..++--|.++.++..+-..+++.|++++|+.+|.+.+.++...+..+|..++-. ++++..+.+.|++++|++++.+++.
T Consensus 267 rv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~-~ENK~~m~~~giV~kL~kLl~s~~~ 345 (708)
T PF05804_consen 267 RVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIF-KENKDEMAESGIVEKLLKLLPSENE 345 (708)
T ss_pred HHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHhcCCCH
Confidence 356667889999999999999999999999999999999999999999999974 5689999999999999999999998
Q ss_pred HHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHH
Q 015709 231 EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLK 310 (402)
Q Consensus 231 ~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~ 310 (402)
.+...++..|.|+.- ++..+..++..|.++.|+.+|.++ + .+.-++.++++|+. +...+..|...+.++
T Consensus 346 ~l~~~aLrlL~NLSf-d~~~R~~mV~~GlIPkLv~LL~d~--~--~~~val~iLy~LS~------dd~~r~~f~~TdcIp 414 (708)
T PF05804_consen 346 DLVNVALRLLFNLSF-DPELRSQMVSLGLIPKLVELLKDP--N--FREVALKILYNLSM------DDEARSMFAYTDCIP 414 (708)
T ss_pred HHHHHHHHHHHHhCc-CHHHHHHHHHCCCcHHHHHHhCCC--c--hHHHHHHHHHHhcc------CHhhHHHHhhcchHH
Confidence 889999999999975 567799999999999999999975 2 45678999999974 456788888889999
Q ss_pred HHHHhhcC-CChHHHHHHHHHHHHHhcCChhhHHHHHhcCCcHHHHHHH
Q 015709 311 SVVDLTAS-ADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERL 358 (402)
Q Consensus 311 ~Lv~lL~~-~d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~~~L~~L 358 (402)
.++++|-+ ++..+...++..+.+|+.+...+ +.+.+.+||..++++.
T Consensus 415 ~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rna-qlm~~g~gL~~L~~ra 462 (708)
T PF05804_consen 415 QLMQMLLENSEEEVQLELIALLINLALNKRNA-QLMCEGNGLQSLMKRA 462 (708)
T ss_pred HHHHHHHhCCCccccHHHHHHHHHHhcCHHHH-HHHHhcCcHHHHHHHH
Confidence 99997654 56667666777888899887644 5555467776666554
No 14
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.19 E-value=3.2e-09 Score=112.10 Aligned_cols=205 Identities=16% Similarity=0.157 Sum_probs=168.3
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHc
Q 015709 136 AIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL 215 (402)
Q Consensus 136 al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~ 215 (402)
.+..|.+. +.|....+++.|..++...+-... .-+..+.|...|.|+++.||..+++.|+.+++++....+.+.+.
T Consensus 43 lf~~L~~~--~~e~v~~~~~iL~~~l~~~~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~ 118 (503)
T PF10508_consen 43 LFDCLNTS--NREQVELICDILKRLLSALSPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDN 118 (503)
T ss_pred HHHHHhhc--ChHHHHHHHHHHHHHHhccCHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCc
Confidence 44455544 456667777888888887755444 33456788889999999999999999999999998888889999
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccC
Q 015709 216 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM 295 (402)
Q Consensus 216 g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~ 295 (402)
+.++.++.++.+++.++...|+-+|+.+..+ ++..+.++..++...|..++..+ +.-+|.++..++.+++. .
T Consensus 119 ~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~-~~~~~~l~~~~~~~~L~~l~~~~--~~~vR~Rv~el~v~i~~-----~ 190 (503)
T PF10508_consen 119 ELLPLIIQCLRDPDLSVAKAAIKALKKLASH-PEGLEQLFDSNLLSKLKSLMSQS--SDIVRCRVYELLVEIAS-----H 190 (503)
T ss_pred cHHHHHHHHHcCCcHHHHHHHHHHHHHHhCC-chhHHHHhCcchHHHHHHHHhcc--CHHHHHHHHHHHHHHHh-----c
Confidence 9999999999999999999999999999975 56677788889999999999875 34478889999999985 3
Q ss_pred CCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCcHHH
Q 015709 296 HKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTA 354 (402)
Q Consensus 296 ~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~~~ 354 (402)
+++....+.+.|+++.++..|.++|.-+|..++..|..|+... ...+-+. ..|+-+.
T Consensus 191 S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~-~g~~yL~-~~gi~~~ 247 (503)
T PF10508_consen 191 SPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETP-HGLQYLE-QQGIFDK 247 (503)
T ss_pred CHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcCh-hHHHHHH-hCCHHHH
Confidence 5677788889999999999999999999999999999999954 4455555 4454333
No 15
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.18 E-value=7e-10 Score=107.25 Aligned_cols=172 Identities=17% Similarity=0.172 Sum_probs=135.0
Q ss_pred HhcCCHHHHHHhcC-CCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh
Q 015709 171 SKLGGLSVLVGQLN-HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA 249 (402)
Q Consensus 171 ~~lGgl~~Li~lL~-s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~ 249 (402)
...+.++.|+.+|+ +.+|.|+..|..++|+.+. .|.+|+.+.+.|+++.+..+++++++.+|.+|++||.++..+ .+
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~-~e 86 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVN-DE 86 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCC-hh
Confidence 44567889999996 5789999999999999875 789999999999999999999999999999999999999765 44
Q ss_pred cHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHH
Q 015709 250 GQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALA 329 (402)
Q Consensus 250 ~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~ 329 (402)
++..+. .-+-.++..+..++ .+..+|..++.+|.+|+. ..+....+. +.++.++.+|.+++..++.+++.
T Consensus 87 n~~~Ik-~~i~~Vc~~~~s~~-lns~~Q~agLrlL~nLtv------~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk 156 (254)
T PF04826_consen 87 NQEQIK-MYIPQVCEETVSSP-LNSEVQLAGLRLLTNLTV------TNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLK 156 (254)
T ss_pred hHHHHH-HHHHHHHHHHhcCC-CCCHHHHHHHHHHHccCC------CcchhhhHH--hhHHHHHHHHHcCChHHHHHHHH
Confidence 555543 33444444444443 356689999999999974 233344443 47999999999999999999999
Q ss_pred HHHHHhcCChhhHHHHHhcCCcHHHH
Q 015709 330 AIKNLLQLRTTEALVLKDFCGLDTAL 355 (402)
Q Consensus 330 aL~~L~~~~~~~~~~~~~~~GL~~~L 355 (402)
+|.+|++.+...++.+. ..++...+
T Consensus 157 ~L~nLS~np~~~~~Ll~-~q~~~~~~ 181 (254)
T PF04826_consen 157 VLVNLSENPDMTRELLS-AQVLSSFL 181 (254)
T ss_pred HHHHhccCHHHHHHHHh-ccchhHHH
Confidence 99999998866666665 44444443
No 16
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=2.1e-09 Score=106.70 Aligned_cols=175 Identities=19% Similarity=0.152 Sum_probs=141.9
Q ss_pred HHHccCCCCchhHHHhcCCHHHHHHhc--CCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHH
Q 015709 157 LLILVEPIDNANDLSKLGGLSVLVGQL--NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAV 234 (402)
Q Consensus 157 L~~Lve~iDnA~~l~~lGgl~~Li~lL--~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~ 234 (402)
.-+.++..+..-++.++ +...-+ .+.+.+=+..|..-|-..+.+ -+....++..||+.+++..+++++.++|.
T Consensus 68 ~k~~~~~~~~~~~~~~~----~~~~~~~~~s~~le~ke~ald~Le~lve~-iDnAndl~~~ggl~~ll~~l~~~~~~lR~ 142 (342)
T KOG2160|consen 68 QKDFVEDMKVISDVMSM----IPIVILNSSSVDLEDKEDALDNLEELVED-IDNANDLISLGGLVPLLGYLENSDAELRE 142 (342)
T ss_pred hhhhcccchhHHHHHHh----hhhhccCcccCCHHHHHHHHHHHHHHHHh-hhhHHhHhhccCHHHHHHHhcCCcHHHHH
Confidence 34556666666666666 223333 345677788999999999975 44667789999999999999999999999
Q ss_pred HHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHH
Q 015709 235 KALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVD 314 (402)
Q Consensus 235 kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~ 314 (402)
+|++.|+.+++|||..|..+++.||.+.|..+|.++ .+..+|.||++++++|+.+ ++.....|...+....|..
T Consensus 143 ~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~-~~~~~r~kaL~AissLIRn-----~~~g~~~fl~~~G~~~L~~ 216 (342)
T KOG2160|consen 143 LAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSD-DPNTVRTKALFAISSLIRN-----NKPGQDEFLKLNGYQVLRD 216 (342)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccC-CCchHHHHHHHHHHHHHhc-----CcHHHHHHHhcCCHHHHHH
Confidence 999999999999999999999999999999999976 4667899999999999974 4555555666666899999
Q ss_pred hhcC--CChHHHHHHHHHHHHHhcCChhhH
Q 015709 315 LTAS--ADLDLQEKALAAIKNLLQLRTTEA 342 (402)
Q Consensus 315 lL~~--~d~dv~E~aL~aL~~L~~~~~~~~ 342 (402)
+|.+ .+..++.+++..+..|++......
T Consensus 217 vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~ 246 (342)
T KOG2160|consen 217 VLQSNNTSVKLKRKALFLLSLLLQEDKSDE 246 (342)
T ss_pred HHHcCCcchHHHHHHHHHHHHHHHhhhhhh
Confidence 9998 578899999999999987654333
No 17
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.97 E-value=6e-08 Score=95.69 Aligned_cols=189 Identities=12% Similarity=0.103 Sum_probs=142.8
Q ss_pred HHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCC-CCHHHH---HHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhh
Q 015709 150 SQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH-PDTDIR---KISAWILGKASQNNPLVQKQVLELGALSKLMKMV 225 (402)
Q Consensus 150 k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s-~~~~Ir---~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL 225 (402)
...++-.|.-+.=.-+....+...||+..|+.++.+ ++.+.| ..+++.|..++ .|+.++..+++.|+++.++.++
T Consensus 259 L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA-G~DsvKs~IV~~gg~~~ii~l~ 337 (461)
T KOG4199|consen 259 LVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA-GSDSVKSTIVEKGGLDKIITLA 337 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh-CCCchHHHHHHhcChHHHHHHH
Confidence 333333333333334456677789999999999965 556666 55666677777 4677999999999999999887
Q ss_pred c--CCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhH
Q 015709 226 K--SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLF 303 (402)
Q Consensus 226 ~--s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l 303 (402)
. ++++.+...++.+||-++--.|.....|++.||-...++.++.....-.+|++|+|+|.|++.. ..+++..+
T Consensus 338 ~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~r-----s~~~~~~~ 412 (461)
T KOG4199|consen 338 LRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVR-----SAENRTIL 412 (461)
T ss_pred HHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHh-----hhhccchH
Confidence 6 3557788888888988877788999999999999999999996544567999999999999964 34556666
Q ss_pred HhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChhhHHHHH
Q 015709 304 RDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLK 346 (402)
Q Consensus 304 ~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~~~~~~ 346 (402)
...| ++.|+..-+..+.++...+-.||.-|-++. ..|..|.
T Consensus 413 l~~G-iE~Li~~A~~~h~tce~~akaALRDLGc~v-~lre~wt 453 (461)
T KOG4199|consen 413 LANG-IEKLIRTAKANHETCEAAAKAALRDLGCDV-YLREEWT 453 (461)
T ss_pred Hhcc-HHHHHHHHHhcCccHHHHHHHHHHhcCcch-hhHHHhc
Confidence 6655 677777777888888888888888887664 3455553
No 18
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.97 E-value=1.4e-07 Score=93.12 Aligned_cols=216 Identities=13% Similarity=0.114 Sum_probs=170.4
Q ss_pred HhhcCCCCHHHHHHHHHHHHHccCCC----------CchhHHHhcCCHHHHHHhcCC-CCHHHHHHHHHHHHHHhcCChH
Q 015709 139 DLNNSTLSLEDSQRALQELLILVEPI----------DNANDLSKLGGLSVLVGQLNH-PDTDIRKISAWILGKASQNNPL 207 (402)
Q Consensus 139 ~L~~~~~t~e~k~~AL~~L~~Lve~i----------DnA~~l~~lGgl~~Li~lL~s-~~~~Ir~~Aa~vLg~~aqNNp~ 207 (402)
+|+..+.+ +.--.+.+.|.-++-+- ..|+.|.+.||+..|+..|.. -+|++...++-.|++++-+|+.
T Consensus 197 ~l~~~gk~-~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~ 275 (461)
T KOG4199|consen 197 VLNREGKT-RTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEI 275 (461)
T ss_pred HHcccCcc-HHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHH
Confidence 45555544 33334566666665433 468999999999999999954 5799999999999999998887
Q ss_pred hHHHHHHcCcHHHHHHhhcCCC-HHHH---HHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHH
Q 015709 208 VQKQVLELGALSKLMKMVKSSF-VEEA---VKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSL 283 (402)
Q Consensus 208 ~Q~~~le~g~L~~Ll~LL~s~~-~~vr---~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~l 283 (402)
||. +.+.||+..|+.++.+.+ ...| ..++..|+.+. ++......+++.||.+.|+.++-...+++.+...++..
T Consensus 276 C~~-I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA-G~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~ 353 (461)
T KOG4199|consen 276 CKS-IAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA-GSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAI 353 (461)
T ss_pred HHH-HHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh-CCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHH
Confidence 765 789999999999999865 3444 45666677665 66788999999999999999987666688899999999
Q ss_pred HHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCC--ChHHHHHHHHHHHHHhcCChhhHHHHHhcCCcHHHHHHHHHH
Q 015709 284 VGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQ 361 (402)
Q Consensus 284 L~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~--d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~~~L~~L~~~ 361 (402)
++-||-- .|+....+++.|.-...++.++.- ...+|..+.+++.+++..+.+.+..+- ..|++.++..=+..
T Consensus 354 i~~l~LR-----~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l-~~GiE~Li~~A~~~ 427 (461)
T KOG4199|consen 354 ISILCLR-----SPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILL-ANGIEKLIRTAKAN 427 (461)
T ss_pred HHHHHhc-----CcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHH-hccHHHHHHHHHhc
Confidence 9999853 567777889999999999988753 678999999999999998877777666 78888877765554
Q ss_pred hH
Q 015709 362 LQ 363 (402)
Q Consensus 362 ~~ 363 (402)
++
T Consensus 428 h~ 429 (461)
T KOG4199|consen 428 HE 429 (461)
T ss_pred Cc
Confidence 44
No 19
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=98.95 E-value=7.9e-08 Score=93.02 Aligned_cols=193 Identities=19% Similarity=0.141 Sum_probs=153.8
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhH
Q 015709 130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQ 209 (402)
Q Consensus 130 ~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q 209 (402)
++-+++++..|.... ++.-+..|+-.+.......-+-.-+.+.||++.+..+|+++++.+|..|.+++.+++.+ .+.|
T Consensus 11 ~~~l~~Ll~lL~~t~-dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~-~en~ 88 (254)
T PF04826_consen 11 AQELQKLLCLLESTE-DPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVN-DENQ 88 (254)
T ss_pred HHHHHHHHHHHhcCC-ChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCC-hhhH
Confidence 344566667776543 55677777778887766666777788899999999999999999999999999999865 5677
Q ss_pred HHHHHcCcHHHHHHhhcCC--CHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q 015709 210 KQVLELGALSKLMKMVKSS--FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDL 287 (402)
Q Consensus 210 ~~~le~g~L~~Ll~LL~s~--~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L 287 (402)
..+-. .++.+++...+. +.+++..++.+|.+|...+ ..+..+ .+.++.+..+|.++ +.++|..++.+|.+|
T Consensus 89 ~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~-~~~~~l--~~~i~~ll~LL~~G--~~~~k~~vLk~L~nL 161 (254)
T PF04826_consen 89 EQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTN-DYHHML--ANYIPDLLSLLSSG--SEKTKVQVLKVLVNL 161 (254)
T ss_pred HHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCc-chhhhH--HhhHHHHHHHHHcC--ChHHHHHHHHHHHHh
Confidence 76643 588888866654 3578899999999997653 334444 45799999999986 567899999999999
Q ss_pred hhcccccCCCCcchhHHhCCcHHHHHHhhcCC-ChHHHHHHHHHHHHHhcC
Q 015709 288 AKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKALAAIKNLLQL 337 (402)
Q Consensus 288 ~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~dv~E~aL~aL~~L~~~ 337 (402)
+. ++.....+....++..++.++... +.++...++..+.++...
T Consensus 162 S~------np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 162 SE------NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred cc------CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 74 678888888889999999999886 788899999999888654
No 20
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.94 E-value=2e-08 Score=99.65 Aligned_cols=222 Identities=22% Similarity=0.283 Sum_probs=158.2
Q ss_pred CHHHHHHHHHHHHHccCC-CCchhHHHhcC------CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcH
Q 015709 146 SLEDSQRALQELLILVEP-IDNANDLSKLG------GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGAL 218 (402)
Q Consensus 146 t~e~k~~AL~~L~~Lve~-iDnA~~l~~lG------gl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L 218 (402)
..+-..-.|--+.+++.+ .....-|.... -+.++++++.+++.-|+..|+.+++.+....+....... .+.+
T Consensus 70 ~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~-~~~l 148 (312)
T PF03224_consen 70 NDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLV-KEAL 148 (312)
T ss_dssp -HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHH-HHHH
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchH-HHHH
Confidence 345566667777776654 45666666633 489999999999999999999999999987665554433 4677
Q ss_pred HHHHHhhcCCC----HHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhh-----cCCCccHHHHHHHHHHHHHHhh
Q 015709 219 SKLMKMVKSSF----VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDIL-----GNSSFEIRLHRKAVSLVGDLAK 289 (402)
Q Consensus 219 ~~Ll~LL~s~~----~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL-----~s~~~d~klq~kA~~lL~~L~~ 289 (402)
+.+++.+++.. .+++.-|+.++++++| .+..+..|.+.||++.|..++ .+.+.+..++-.+++++.-|..
T Consensus 149 ~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF 227 (312)
T PF03224_consen 149 PKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSF 227 (312)
T ss_dssp HHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhc
Confidence 88888888632 3456889999999997 478899999999999999999 3344678899999999998875
Q ss_pred cccccCCCCcchhHHhCCcHHHHHHhhcCC-ChHHHHHHHHHHHHHhcCCh--hhHHHHHhcCCcHHHHHHHHHHhHHhh
Q 015709 290 CQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKALAAIKNLLQLRT--TEALVLKDFCGLDTALERLRQQLQEVM 366 (402)
Q Consensus 290 ~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~dv~E~aL~aL~~L~~~~~--~~~~~~~~~~GL~~~L~~L~~~~~~l~ 366 (402)
++...+.+.+.++++.|+++++.. ...+..-++.++.+|+.... ....++ .+|+.+.++.|..+- .
T Consensus 228 ------~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv--~~~~l~~l~~L~~rk---~ 296 (312)
T PF03224_consen 228 ------EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMV--LCGLLKTLQNLSERK---W 296 (312)
T ss_dssp ------SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHH--HH-HHHHHHHHHSS-----
T ss_pred ------CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHH--HccHHHHHHHHhcCC---C
Confidence 467778888899999999999865 67899999999999999876 344444 588888888874421 1
Q ss_pred hhhhHhhhHHHHHHHHH
Q 015709 367 LEEDQRDYAMDVEALRR 383 (402)
Q Consensus 367 ~~e~~~~y~~~l~~~~~ 383 (402)
.+| |-.+|++.+.+
T Consensus 297 ~De---dl~edl~~L~e 310 (312)
T PF03224_consen 297 SDE---DLTEDLEFLKE 310 (312)
T ss_dssp SSH---HHHHHHHHHHH
T ss_pred CCH---HHHHHHHHHHh
Confidence 233 34456655554
No 21
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.87 E-value=2e-07 Score=98.55 Aligned_cols=194 Identities=18% Similarity=0.156 Sum_probs=158.9
Q ss_pred HHHHHHHHHcCCCC-HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCch-hHHHhcCCHHHHHHhcCCCCHHHHH
Q 015709 115 MEIKELMEKLKTPS-DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNA-NDLSKLGGLSVLVGQLNHPDTDIRK 192 (402)
Q Consensus 115 ~~L~ea~~~l~~~~-d~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA-~~l~~lGgl~~Li~lL~s~~~~Ir~ 192 (402)
+-|+..++.+...+ ....+..+..-|.++ ++..|.-++..+..+++..+.+ .-+...+.++.++.+|.+++.++..
T Consensus 60 ~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~--~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~ 137 (503)
T PF10508_consen 60 DILKRLLSALSPDSLLPQYQPFLQRGLTHP--SPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAK 137 (503)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHH
Confidence 34555555443222 244555555556655 4578888999999988877664 4566688899999999999999999
Q ss_pred HHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCc
Q 015709 193 ISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSF 272 (402)
Q Consensus 193 ~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~ 272 (402)
.|+.+|..++.+.+.. +.++..+.++.|..++...+..+|.+++..+..+..+++...+...+.|.++.++..|+++
T Consensus 138 ~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~d-- 214 (503)
T PF10508_consen 138 AAIKALKKLASHPEGL-EQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSD-- 214 (503)
T ss_pred HHHHHHHHHhCCchhH-HHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCc--
Confidence 9999999999876544 5677888899999999987888899999999999999999999999999999999999984
Q ss_pred cHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCC
Q 015709 273 EIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA 319 (402)
Q Consensus 273 d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~ 319 (402)
|+-+|..++-+++.|+. .+.....+.+.|+++.|++++...
T Consensus 215 DiLvqlnalell~~La~------~~~g~~yL~~~gi~~~L~~~l~~~ 255 (503)
T PF10508_consen 215 DILVQLNALELLSELAE------TPHGLQYLEQQGIFDKLSNLLQDS 255 (503)
T ss_pred cHHHHHHHHHHHHHHHc------ChhHHHHHHhCCHHHHHHHHHhcc
Confidence 88899999999999985 456688999999999999999765
No 22
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.82 E-value=5.5e-08 Score=102.51 Aligned_cols=171 Identities=13% Similarity=0.110 Sum_probs=136.0
Q ss_pred CCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 015709 164 IDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSL 243 (402)
Q Consensus 164 iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~L 243 (402)
++++..+-..-....+....-..+.+.+..|+-|+-+++..-...+.-+-...+..+|++++..++..+...++.||.|+
T Consensus 367 i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~Nl 446 (678)
T KOG1293|consen 367 ISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNL 446 (678)
T ss_pred hhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHH
Confidence 77777766554444444444567899999999999888865444444433456899999999887788999999999999
Q ss_pred hcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHH
Q 015709 244 IRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDL 323 (402)
Q Consensus 244 iR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv 323 (402)
+-.+.+-+..|+..||++.|...+.++ ++.+|.++.|+++++..+ .++..+..+...-....++.+.+.+|..+
T Consensus 447 Vmefs~~kskfl~~ngId~l~s~~~~~--~~n~r~~~~~~Lr~l~f~----~de~~k~~~~~ki~a~~i~~l~nd~d~~V 520 (678)
T KOG1293|consen 447 VMEFSNLKSKFLRNNGIDILESMLTDP--DFNSRANSLWVLRHLMFN----CDEEEKFQLLAKIPANLILDLINDPDWAV 520 (678)
T ss_pred HhhcccHHHHHHHcCcHHHHHHHhcCC--CchHHHHHHHHHHHHHhc----chHHHHHHHHHHhhHHHHHHHHhCCCHHH
Confidence 999999999999999999999999986 667899999999999974 34444444445555667788888899999
Q ss_pred HHHHHHHHHHHhcCChh
Q 015709 324 QEKALAAIKNLLQLRTT 340 (402)
Q Consensus 324 ~E~aL~aL~~L~~~~~~ 340 (402)
||+++..|.+|++...+
T Consensus 521 qeq~fqllRNl~c~~~~ 537 (678)
T KOG1293|consen 521 QEQCFQLLRNLTCNSRK 537 (678)
T ss_pred HHHHHHHHHHhhcCcHH
Confidence 99999999999998543
No 23
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=3.4e-07 Score=98.70 Aligned_cols=240 Identities=16% Similarity=0.155 Sum_probs=178.2
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhH-----HHhcCCHHHHHHhcCC-CCHHHHHHHHHHHHH
Q 015709 127 PSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNAND-----LSKLGGLSVLVGQLNH-PDTDIRKISAWILGK 200 (402)
Q Consensus 127 ~~d~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~-----l~~lGgl~~Li~lL~s-~~~~Ir~~Aa~vLg~ 200 (402)
.+.--.||+++.-|.+.+ ++-..+.|+-+|.+.+ -+.|. |----.+|.|+.+|++ .+.+|...||++|.+
T Consensus 163 ~sasSk~kkLL~gL~~~~-Des~Qleal~Elce~L---~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRalty 238 (1051)
T KOG0168|consen 163 SSASSKAKKLLQGLQAES-DESQQLEALTELCEML---SMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTY 238 (1051)
T ss_pred ccchHHHHHHHHhccccC-ChHHHHHHHHHHHHHH---hhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 344568999999988875 5555655655554433 22222 1112257788999987 579999999999999
Q ss_pred HhcCChHhHHHHHHcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHH
Q 015709 201 ASQNNPLVQKQVLELGALSKLMKMVK-SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRK 279 (402)
Q Consensus 201 ~aqNNp~~Q~~~le~g~L~~Ll~LL~-s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~k 279 (402)
++.--|.+-..++++++||.|+.-|. -+-..+.+.++.||=-|-|.++. +++++||+...+..|.=- ...+|++
T Consensus 239 l~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~---AiL~AG~l~a~LsylDFF--Si~aQR~ 313 (1051)
T KOG0168|consen 239 LCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK---AILQAGALSAVLSYLDFF--SIHAQRV 313 (1051)
T ss_pred HHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH---HHHhcccHHHHHHHHHHH--HHHHHHH
Confidence 99999999999999999999996554 44578899999999999999886 778899999999888743 4568999
Q ss_pred HHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCcHHHHHHHH
Q 015709 280 AVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLR 359 (402)
Q Consensus 280 A~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~~~L~~L~ 359 (402)
|+....|.|.+ ..++....+. ..+|.|..+|...|..+.|.++.++..++.......+++.+-|.. .+++..+
T Consensus 314 AlaiaaN~Cks----i~sd~f~~v~--ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~-dLi~~~~ 386 (1051)
T KOG0168|consen 314 ALAIAANCCKS----IRSDEFHFVM--EALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSH-DLITNIQ 386 (1051)
T ss_pred HHHHHHHHHhc----CCCccchHHH--HHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhch-hHHHHHH
Confidence 99999999974 3555555664 479999999999999999999999999998765566666655443 2345544
Q ss_pred HHhHHhhhhhhHhhhHHHHHHHH
Q 015709 360 QQLQEVMLEEDQRDYAMDVEALR 382 (402)
Q Consensus 360 ~~~~~l~~~e~~~~y~~~l~~~~ 382 (402)
+.+.--..--.+..|+.++--+.
T Consensus 387 qLlsvt~t~Ls~~~~~~vIrmls 409 (1051)
T KOG0168|consen 387 QLLSVTPTILSNGTYTGVIRMLS 409 (1051)
T ss_pred HHHhcCcccccccchhHHHHHHH
Confidence 44433223445778887764444
No 24
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.76 E-value=1.3e-06 Score=95.23 Aligned_cols=205 Identities=19% Similarity=0.162 Sum_probs=163.7
Q ss_pred HHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhc-CCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCC
Q 015709 150 SQRALQELLILVEPIDNANDLSKLGGLSVLVGQL-NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS 228 (402)
Q Consensus 150 k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL-~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~ 228 (402)
...++.-+.++..+..||..++.-||++.|+... +..++- -..+|.|++++.+..|..|.+ .+..|+.++.++
T Consensus 429 ~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~l----LlKlIRNiS~h~~~~k~~f~~--~i~~L~~~v~~~ 502 (708)
T PF05804_consen 429 QLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPL----LLKLIRNISQHDGPLKELFVD--FIGDLAKIVSSG 502 (708)
T ss_pred cHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHH----HHHHHHHHHhcCchHHHHHHH--HHHHHHHHhhcC
Confidence 4456666778888899999999999999999865 555543 357999999999889988875 799999999876
Q ss_pred C-HHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCC
Q 015709 229 F-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRF 307 (402)
Q Consensus 229 ~-~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g 307 (402)
+ .+....++..|+|+.-.+....+.+.+++-++.|...|..+..+..+...++-+++.++. ++.....+.+.|
T Consensus 503 ~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~------d~~~A~lL~~sg 576 (708)
T PF05804_consen 503 DSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS------DPECAPLLAKSG 576 (708)
T ss_pred CcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC------CHHHHHHHHhCC
Confidence 5 577899999999998765554555557899999999998765555688899999999884 567788888999
Q ss_pred cHHHHHHhhcCC--ChHHHHHHHHHHHHHhcCChhhHHHHHhcCC-cHHHHHHHHHHhHHhhh
Q 015709 308 FLKSVVDLTASA--DLDLQEKALAAIKNLLQLRTTEALVLKDFCG-LDTALERLRQQLQEVML 367 (402)
Q Consensus 308 ~v~~Lv~lL~~~--d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~G-L~~~L~~L~~~~~~l~~ 367 (402)
+++.|+++|+.. |.++.-+.+.++.+++.+.+ .|+.+-...+ ..-.+..++..+.++.+
T Consensus 577 li~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~-tr~~ll~~~~~~~ylidL~~d~N~~ir~ 638 (708)
T PF05804_consen 577 LIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEE-TREVLLKETEIPAYLIDLMHDKNAEIRK 638 (708)
T ss_pred hHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChH-HHHHHHhccchHHHHHHHhcCCCHHHHH
Confidence 999999999865 88999999999999999975 5665543444 44567777777776543
No 25
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=98.73 E-value=2.2e-07 Score=99.80 Aligned_cols=212 Identities=17% Similarity=0.177 Sum_probs=156.8
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh--cHHH
Q 015709 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA--GQEM 253 (402)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~--~~~~ 253 (402)
+|-.+.+|.+.++.++..|+.-+-.++-.+.+++..+.+.|+|++|+.+|.+...+++..|++||-|++-+... +.-+
T Consensus 235 lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKla 314 (717)
T KOG1048|consen 235 LPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLA 314 (717)
T ss_pred cHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchh
Confidence 56778999999999999999999999999999999999999999999999999999999999999999988666 7888
Q ss_pred HHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcC--------------C
Q 015709 254 FYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS--------------A 319 (402)
Q Consensus 254 f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~--------------~ 319 (402)
+.++||++.++++|+... |..++..+..++.||.. ....+..++. ..+..|-+-+-. .
T Consensus 315 i~~~~Gv~~l~~~Lr~t~-D~ev~e~iTg~LWNLSS------~D~lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~ 386 (717)
T KOG1048|consen 315 IKELNGVPTLVRLLRHTQ-DDEVRELITGILWNLSS------NDALKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAE 386 (717)
T ss_pred hhhcCChHHHHHHHHhhc-chHHHHHHHHHHhcccc------hhHHHHHHHH-HHHHHHHHhhcccccccCCCCcccccc
Confidence 889999999999999653 55689999999999974 2223333332 334444333211 1
Q ss_pred ChHHHHHHHHHHHHHhcCChhhHHHHHhcCCcHHHH-HHHHHHhHHhhhhhhHhhhHHHHHHHH-------HHHHHHHHH
Q 015709 320 DLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTAL-ERLRQQLQEVMLEEDQRDYAMDVEALR-------REVELIFFR 391 (402)
Q Consensus 320 d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~~~L-~~L~~~~~~l~~~e~~~~y~~~l~~~~-------~e~~~~~~~ 391 (402)
+.++--.+..+|.++.+.+.+.|+.++...||-..| -.++.-.+.-.-+....|-| ++.+| .||-.-+++
T Consensus 387 ~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENc--vCilRNLSYrl~~Evp~~~~~ 464 (717)
T KOG1048|consen 387 DSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENC--VCILRNLSYRLEAEVPPKYRQ 464 (717)
T ss_pred cceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHH--HHHHhhcCchhhhhcCHhhhh
Confidence 356778899999999998888999999877764443 33332222221133344445 33355 555555555
Q ss_pred Hhhhcc
Q 015709 392 KLDDSG 397 (402)
Q Consensus 392 ~~~~~~ 397 (402)
-+..++
T Consensus 465 ~~~~~~ 470 (717)
T KOG1048|consen 465 VLANIA 470 (717)
T ss_pred Hhhccc
Confidence 555554
No 26
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.59 E-value=2.2e-05 Score=81.23 Aligned_cols=244 Identities=16% Similarity=0.115 Sum_probs=166.2
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCC-CchhHHHhc-----CCHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Q 015709 130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPI-DNANDLSKL-----GGLSVLVGQLNHPDTDIRKISAWILGKASQ 203 (402)
Q Consensus 130 ~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~i-DnA~~l~~l-----Ggl~~Li~lL~s~~~~Ir~~Aa~vLg~~aq 203 (402)
....+-.+..+.+.. ..+-..-.|--+.+++... ..+.-|++. .-+.+++.+|++++.-|...|+.+++.+++
T Consensus 52 ~~y~~~~l~ll~~~~-~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~ 130 (429)
T cd00256 52 GQYVKTFVNLLSQID-KDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLAC 130 (429)
T ss_pred HHHHHHHHHHHhccC-cHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHh
Confidence 556666666666543 3354555555566666443 345667765 468899999999999999999999999987
Q ss_pred CChHhHHHHHHcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHH
Q 015709 204 NNPLVQKQVLELGALSKLMKMVKSS-FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVS 282 (402)
Q Consensus 204 NNp~~Q~~~le~g~L~~Ll~LL~s~-~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~ 282 (402)
..+.........-.+.-|...+++. +...+.-++.+++.++|. +..+..|.+.+|++.|..+|+....+..++-.+++
T Consensus 131 ~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~-~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll 209 (429)
T cd00256 131 FGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRV-DEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIF 209 (429)
T ss_pred cCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCC-chHHHHHHHccCHHHHHHHHhhccccHHHHHHHHH
Confidence 6543222211111334455566553 345677788999999986 56678899999999999999875446788999999
Q ss_pred HHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCC-ChHHHHHHHHHHHHHhcCCh------h-hHHHHHhcCCcHHH
Q 015709 283 LVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKALAAIKNLLQLRT------T-EALVLKDFCGLDTA 354 (402)
Q Consensus 283 lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~dv~E~aL~aL~~L~~~~~------~-~~~~~~~~~GL~~~ 354 (402)
++.-|..+ +...+.+...++++.++++++.. -..+...++.++.+|+..+. . +..++ .+|+.+.
T Consensus 210 ~lWlLSF~------~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv--~~~l~~~ 281 (429)
T cd00256 210 CIWLLTFN------PHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMV--QCKVLKT 281 (429)
T ss_pred HHHHHhcc------HHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHH--HcChHHH
Confidence 99988753 34555667789999999999865 66788888889999998531 1 22233 4788777
Q ss_pred HHHHHHHhHHhhhhhhHhhhHHHHHHHHHHHHHHH
Q 015709 355 LERLRQQLQEVMLEEDQRDYAMDVEALRREVELIF 389 (402)
Q Consensus 355 L~~L~~~~~~l~~~e~~~~y~~~l~~~~~e~~~~~ 389 (402)
+..|+.+- ..++ |-.+||+.+.+..+..+
T Consensus 282 l~~L~~rk---~~De---dL~edl~~L~e~L~~~~ 310 (429)
T cd00256 282 LQSLEQRK---YDDE---DLTDDLKFLTEELKNSV 310 (429)
T ss_pred HHHHhcCC---CCcH---HHHHHHHHHHHHHHHHH
Confidence 77763221 1233 34556777776666664
No 27
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=1.7e-05 Score=85.43 Aligned_cols=202 Identities=21% Similarity=0.232 Sum_probs=160.5
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCC------c-----------hhHHHhc-CCHHHHHHhcCCCCHHHHH
Q 015709 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPID------N-----------ANDLSKL-GGLSVLVGQLNHPDTDIRK 192 (402)
Q Consensus 131 ~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iD------n-----------A~~l~~l-Ggl~~Li~lL~s~~~~Ir~ 192 (402)
.-||-.+.+|.+.-.++|-...+|+.+..++..-| + |..|++. +-+..|+.++...+-.||.
T Consensus 61 ~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~ 140 (970)
T KOG0946|consen 61 QGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRL 140 (970)
T ss_pred cccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhh
Confidence 44888888888877777888888888888775443 2 3445554 4567788899999999999
Q ss_pred HHHHHHHHHhcCC-hHhHHHHHHc-CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCC
Q 015709 193 ISAWILGKASQNN-PLVQKQVLEL-GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS 270 (402)
Q Consensus 193 ~Aa~vLg~~aqNN-p~~Q~~~le~-g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~ 270 (402)
+|...|.++..+- +++|++++.. -+|.+|+.+|.+.-..+|-.|++-|+.++|+|+..|+.+.=.|.+.-|..++...
T Consensus 141 ~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeE 220 (970)
T KOG0946|consen 141 YAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEE 220 (970)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999988764 5699998876 5899999999987788999999999999999988888777789999999999753
Q ss_pred C--ccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCC---C----------hHHHHHHHHHHHHHh
Q 015709 271 S--FEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA---D----------LDLQEKALAAIKNLL 335 (402)
Q Consensus 271 ~--~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~---d----------~dv~E~aL~aL~~L~ 335 (402)
. +.--+...++.++.+|.. .+.+....|.+.+.++.|.++|..+ | ....-.+|.++..|+
T Consensus 221 Gg~dGgIVveDCL~ll~NLLK-----~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lV 295 (970)
T KOG0946|consen 221 GGLDGGIVVEDCLILLNNLLK-----NNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLV 295 (970)
T ss_pred CCCCCcchHHHHHHHHHHHHh-----hCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhc
Confidence 2 122378899999999995 4778889999999999999998753 2 122345677777777
Q ss_pred cC
Q 015709 336 QL 337 (402)
Q Consensus 336 ~~ 337 (402)
.-
T Consensus 296 sP 297 (970)
T KOG0946|consen 296 SP 297 (970)
T ss_pred CC
Confidence 64
No 28
>PRK09687 putative lyase; Provisional
Probab=98.28 E-value=3e-05 Score=76.20 Aligned_cols=168 Identities=11% Similarity=0.033 Sum_probs=86.4
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHH
Q 015709 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQV 212 (402)
Q Consensus 133 Mk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~ 212 (402)
++.+++.|.+. +...+..|...|..+=. -..++.+..+++++++.+|..|+++||.+.... ..+.
T Consensus 25 ~~~L~~~L~d~--d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~-~~~~-- 89 (280)
T PRK09687 25 DDELFRLLDDH--NSLKRISSIRVLQLRGG----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAK-RCQD-- 89 (280)
T ss_pred HHHHHHHHhCC--CHHHHHHHHHHHHhcCc----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc-cchH--
Confidence 44455555544 33456666555543211 123555666667777777777777777764211 1111
Q ss_pred HHcCcHHHHHHh-hcCCCHHHHHHHHHHHHHHhcCChhcHHHHH--------------------------hcCcHHHHHH
Q 015709 213 LELGALSKLMKM-VKSSFVEEAVKALYTVSSLIRNNLAGQEMFY--------------------------VEAGDLMLQD 265 (402)
Q Consensus 213 le~g~L~~Ll~L-L~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~--------------------------~~gGi~~L~~ 265 (402)
..++.|..+ ++++++.||..|+.+|+.+..........++ ....++.|+.
T Consensus 90 ---~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~ 166 (280)
T PRK09687 90 ---NVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLIN 166 (280)
T ss_pred ---HHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHH
Confidence 234555555 3444456666666666665322110000000 0114455555
Q ss_pred hhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHH
Q 015709 266 ILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNL 334 (402)
Q Consensus 266 lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L 334 (402)
+|+++ +..+|..|++.|..+... ....++.|+.+|..++.+++..|+.+|..+
T Consensus 167 ~L~d~--~~~VR~~A~~aLg~~~~~--------------~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 167 LLKDP--NGDVRNWAAFALNSNKYD--------------NPDIREAFVAMLQDKNEEIRIEAIIGLALR 219 (280)
T ss_pred HhcCC--CHHHHHHHHHHHhcCCCC--------------CHHHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence 55554 334566666655554210 124566677777777777777777766664
No 29
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.27 E-value=1.1e-05 Score=75.90 Aligned_cols=185 Identities=17% Similarity=0.147 Sum_probs=119.3
Q ss_pred hcCCCCHHHHHHHHHHHHHccCCC---CchhHHHh-c-CCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHc
Q 015709 141 NNSTLSLEDSQRALQELLILVEPI---DNANDLSK-L-GGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL 215 (402)
Q Consensus 141 ~~~~~t~e~k~~AL~~L~~Lve~i---DnA~~l~~-l-Ggl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~ 215 (402)
.+.+.+=+.+..|+..|..++... +....+.. + ..+..++..+++....|-..|+.+++.++..-...-+.+. .
T Consensus 15 ~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~-~ 93 (228)
T PF12348_consen 15 KESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYA-D 93 (228)
T ss_dssp HHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHH-H
T ss_pred cCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHH-H
Confidence 455567789999999999988654 44444433 2 3455777788888889999999999999986443333332 2
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccC
Q 015709 216 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM 295 (402)
Q Consensus 216 g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~ 295 (402)
..+|.|++.+.+.+..++..|..+|-.++.+.+..... -...+...++++ ++++|..++..+..++..
T Consensus 94 ~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~-----~~~~l~~~~~~K--n~~vR~~~~~~l~~~l~~----- 161 (228)
T PF12348_consen 94 ILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI-----LLEILSQGLKSK--NPQVREECAEWLAIILEK----- 161 (228)
T ss_dssp HHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH-----HHHHHHHHTT-S---HHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH-----HHHHHHHHHhCC--CHHHHHHHHHHHHHHHHH-----
Confidence 47899999999988889999999999999986611111 034556666665 688999999999988753
Q ss_pred CCCcchhHHh----CCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCC
Q 015709 296 HKVEPPLFRD----RFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 338 (402)
Q Consensus 296 ~~~~~~~l~~----~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~ 338 (402)
.+.....+.. ..+++.+..++...++++|+.|-.++..+...-
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~ 208 (228)
T PF12348_consen 162 WGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHF 208 (228)
T ss_dssp -----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH
T ss_pred ccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
Confidence 2211222222 347888888999999999999999999997653
No 30
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=98.27 E-value=1.4e-05 Score=77.25 Aligned_cols=103 Identities=13% Similarity=0.096 Sum_probs=92.4
Q ss_pred CHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHH
Q 015709 187 DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQD 265 (402)
Q Consensus 187 ~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s-~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~ 265 (402)
+......|..+|--++-.+|.+|..|....++..|+.+|+. .++.++..++.+|.++..++|.++..|.+.||+..+..
T Consensus 104 ~~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ 183 (257)
T PF08045_consen 104 NDSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCS 183 (257)
T ss_pred hhHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHH
Confidence 44467889999999999999999999999999999999954 45788999999999999999999999999999999999
Q ss_pred hhcCCCccHHHHHHHHHHHHHHhh
Q 015709 266 ILGNSSFEIRLHRKAVSLVGDLAK 289 (402)
Q Consensus 266 lL~s~~~d~klq~kA~~lL~~L~~ 289 (402)
++++.+.+..+|.|.+-+++-.+.
T Consensus 184 llk~~~~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 184 LLKSKSTDRELRLKCIEFLYFYLM 207 (257)
T ss_pred HHccccccHHHhHHHHHHHHHHHc
Confidence 999988888899999887775553
No 31
>PRK09687 putative lyase; Provisional
Probab=98.24 E-value=4.4e-05 Score=75.02 Aligned_cols=156 Identities=13% Similarity=0.058 Sum_probs=99.6
Q ss_pred CHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHh-cCCCCHHHHHHHHHHHHHHhcC-------------------C
Q 015709 146 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQ-LNHPDTDIRKISAWILGKASQN-------------------N 205 (402)
Q Consensus 146 t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~l-L~s~~~~Ir~~Aa~vLg~~aqN-------------------N 205 (402)
++..|..|...|.++-..-. . .--.++.|..+ ++.+++.||..|+.+||.+... +
T Consensus 67 d~~vR~~A~~aLg~lg~~~~-~----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~ 141 (280)
T PRK09687 67 NPIERDIGADILSQLGMAKR-C----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKS 141 (280)
T ss_pred CHHHHHHHHHHHHhcCCCcc-c----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCC
Confidence 34556666666655432110 0 01134455544 4556666666666666665321 2
Q ss_pred hHhHHHHHHc-------CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHH
Q 015709 206 PLVQKQVLEL-------GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHR 278 (402)
Q Consensus 206 p~~Q~~~le~-------g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~ 278 (402)
+.++..++.. .+++.|+.++++++..+|..|+++|+.+--+++ ..++.|+.+|.++ +..+|.
T Consensus 142 ~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~--~~~VR~ 210 (280)
T PRK09687 142 TNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDK--NEEIRI 210 (280)
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCC--ChHHHH
Confidence 2233332221 368899999998888899999999998822222 4678899999876 566899
Q ss_pred HHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHh
Q 015709 279 KAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL 335 (402)
Q Consensus 279 kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~ 335 (402)
.|++.|..+- +..+++.|++.|..++ ++..++.||..+-
T Consensus 211 ~A~~aLg~~~----------------~~~av~~Li~~L~~~~--~~~~a~~ALg~ig 249 (280)
T PRK09687 211 EAIIGLALRK----------------DKRVLSVLIKELKKGT--VGDLIIEAAGELG 249 (280)
T ss_pred HHHHHHHccC----------------ChhHHHHHHHHHcCCc--hHHHHHHHHHhcC
Confidence 9999988752 2358899999999876 5666776666664
No 32
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.20 E-value=3.6e-06 Score=58.38 Aligned_cols=41 Identities=22% Similarity=0.382 Sum_probs=38.5
Q ss_pred ChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 015709 205 NPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIR 245 (402)
Q Consensus 205 Np~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR 245 (402)
||+.++.+++.|++|+|+++|++.+..++..|+|||+||++
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 57889999999999999999999999999999999999975
No 33
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=98.11 E-value=5.3e-05 Score=85.93 Aligned_cols=211 Identities=15% Similarity=0.120 Sum_probs=155.5
Q ss_pred HHHHHHHcc-CCCCchhHHHhcCC-HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHh-HHHHHHcCcHHHHHHhhcC-C
Q 015709 153 ALQELLILV-EPIDNANDLSKLGG-LSVLVGQLNHPDTDIRKISAWILGKASQNNPLV-QKQVLELGALSKLMKMVKS-S 228 (402)
Q Consensus 153 AL~~L~~Lv-e~iDnA~~l~~lGg-l~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~-Q~~~le~g~L~~Ll~LL~s-~ 228 (402)
|+-.|-+|. -++.|...|+...| +..||..|.+...++..--+.||.|+.=+-... .+.+.+.|-+..|....-. .
T Consensus 371 a~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~ 450 (2195)
T KOG2122|consen 371 AGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNK 450 (2195)
T ss_pred HHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhc
Confidence 344444544 45667778888755 778999999988899999999999998765443 4445577888888866543 3
Q ss_pred CHHHHHHHHHHHHHHhcCChhcHHHHHh-cCcHHHHHHhhcCC--CccHHHHHHHHHHHHHHhhcccccCCCCcchhHHh
Q 015709 229 FVEEAVKALYTVSSLIRNNLAGQEMFYV-EAGDLMLQDILGNS--SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD 305 (402)
Q Consensus 229 ~~~vr~kAl~ALS~LiR~~~~~~~~f~~-~gGi~~L~~lL~s~--~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~ 305 (402)
....-+..|.||=||..|+..+...|+. -|.+.+|+..|... ....++...|-..|.|..... ...+..++.+++
T Consensus 451 kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~I--At~E~yRQILR~ 528 (2195)
T KOG2122|consen 451 KESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLI--ATCEDYRQILRR 528 (2195)
T ss_pred ccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHh--hccchHHHHHHH
Confidence 3333444455555555677777888887 58899999999854 334556666666666654432 245678999999
Q ss_pred CCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCcHHHHHHHHHHhHHh
Q 015709 306 RFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEV 365 (402)
Q Consensus 306 ~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~~~L~~L~~~~~~l 365 (402)
++++..|+++|++....+...++.+|++|..-..+..+.+.+.+...-+...+++.+...
T Consensus 529 ~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMI 588 (2195)
T KOG2122|consen 529 HNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMI 588 (2195)
T ss_pred hhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhh
Confidence 999999999999999999999999999999988888888886666655666666666654
No 34
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=98.08 E-value=4.4e-05 Score=82.51 Aligned_cols=116 Identities=15% Similarity=0.074 Sum_probs=104.2
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCC
Q 015709 217 ALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMH 296 (402)
Q Consensus 217 ~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~ 296 (402)
-+|..+.+|.+..+.++..|.+-|--+++++..+...+.+.|||+.|+.+|.++ ...+++.|++++.||... ..+
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~--~~evq~~acgaLRNLvf~---~~~ 308 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHR--NDEVQRQACGALRNLVFG---KST 308 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCC--cHHHHHHHHHHHHhhhcc---cCC
Confidence 378899999998899999999999999999999999999999999999999997 456899999999999975 234
Q ss_pred CCcchhHHhCCcHHHHHHhhcC-CChHHHHHHHHHHHHHhcC
Q 015709 297 KVEPPLFRDRFFLKSVVDLTAS-ADLDLQEKALAAIKNLLQL 337 (402)
Q Consensus 297 ~~~~~~l~~~g~v~~Lv~lL~~-~d~dv~E~aL~aL~~L~~~ 337 (402)
.+..-.+.+.+.|+.++.+|+. .|.++++.+..+|++|.+.
T Consensus 309 ~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~ 350 (717)
T KOG1048|consen 309 DSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN 350 (717)
T ss_pred cccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch
Confidence 4577788899999999999997 5999999999999999987
No 35
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.05 E-value=1.6e-05 Score=63.19 Aligned_cols=87 Identities=21% Similarity=0.287 Sum_probs=69.7
Q ss_pred HHHHHHhc-CCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHH
Q 015709 176 LSVLVGQL-NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF 254 (402)
Q Consensus 176 l~~Li~lL-~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f 254 (402)
++.|++.| +++++.+|..|+++||.+- .+ .++|.|+.+++++++.+|..|+++|+.+-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~--~~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG--DP---------EAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT--HH---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC--CH---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 57899988 8999999999999999553 22 35899999999989999999999999761
Q ss_pred HhcCcHHHHHHhhcCCCccHHHHHHHHHHHH
Q 015709 255 YVEAGDLMLQDILGNSSFEIRLHRKAVSLVG 285 (402)
Q Consensus 255 ~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~ 285 (402)
....++.|..++.++. +..+|..|+..|+
T Consensus 60 -~~~~~~~L~~~l~~~~-~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 -DPEAIPALIKLLQDDD-DEVVREAAAEALG 88 (88)
T ss_dssp -HHHTHHHHHHHHTC-S-SHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHcCCC-cHHHHHHHHhhcC
Confidence 2347888999998863 5557877877663
No 36
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.05 E-value=1.1e-05 Score=59.19 Aligned_cols=55 Identities=20% Similarity=0.394 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 015709 188 TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSL 243 (402)
Q Consensus 188 ~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~L 243 (402)
+.+|..|+|+||++++..+.....+. ..++|.|+.+|+++++.||..|+|||++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYL-PELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 57999999999999999887766644 46899999999998999999999999975
No 37
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=0.00071 Score=73.85 Aligned_cols=278 Identities=15% Similarity=0.115 Sum_probs=191.8
Q ss_pred CCChHHHHHHHhhcCCCccccchhhccCCC-CHHHHHHhHHHHHHHHHHcCCCCHHH----HHHHHHHH---hhcCCCCH
Q 015709 76 FSSIDGMLQWAIGHSDPAKLKETAQDVQRL-SPSELKKRQMEIKELMEKLKTPSDAQ----LIQIAIDD---LNNSTLSL 147 (402)
Q Consensus 76 ~~~~~gLLkwsi~~sd~~~~~~~~~~~~~~-s~e~l~~r~~~L~ea~~~l~~~~d~~----lMk~al~~---L~~~~~t~ 147 (402)
+|.+..+|+-.+..+...+.+---+..+.- ||- +-.+-++|.-+.+.+-++.. -|+..+.+ |-+.+...
T Consensus 150 gprv~~ll~rt~~~sasSk~kkLL~gL~~~~Des---~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~ 226 (1051)
T KOG0168|consen 150 GPRVLQLLHRTIGSSASSKAKKLLQGLQAESDES---QQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNF 226 (1051)
T ss_pred chhHHHHhhhcccccchHHHHHHHHhccccCChH---HHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccH
Confidence 455677777777776666532111111111 221 12233333333222111111 13333332 33445678
Q ss_pred HHHHHHHHHHHHccCCCC-chhHHHhcCCHHHHHH-hcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhh
Q 015709 148 EDSQRALQELLILVEPID-NANDLSKLGGLSVLVG-QLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV 225 (402)
Q Consensus 148 e~k~~AL~~L~~Lve~iD-nA~~l~~lGgl~~Li~-lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL 225 (402)
|-...|+..|.+++|-.- ..--.+..+.+|.|+. ++.=..-++-+++..+|-.+.+.+| .++++.|+|...+..|
T Consensus 227 DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~---~AiL~AG~l~a~Lsyl 303 (1051)
T KOG0168|consen 227 DIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP---KAILQAGALSAVLSYL 303 (1051)
T ss_pred HHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc---HHHHhcccHHHHHHHH
Confidence 888999999999998753 4456777899999986 5567889999999999999999988 4689999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHhcCC-hhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHH
Q 015709 226 KSSFVEEAVKALYTVSSLIRNN-LAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR 304 (402)
Q Consensus 226 ~s~~~~vr~kAl~ALS~LiR~~-~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~ 304 (402)
.--+..++++|+...+|+|..- +...+-| +..++.|..+|+.. |.+....++-++..++..- ...++..+.+.
T Consensus 304 DFFSi~aQR~AlaiaaN~Cksi~sd~f~~v--~ealPlL~~lLs~~--D~k~ies~~ic~~ri~d~f--~h~~~kLdql~ 377 (1051)
T KOG0168|consen 304 DFFSIHAQRVALAIAANCCKSIRSDEFHFV--MEALPLLTPLLSYQ--DKKPIESVCICLTRIADGF--QHGPDKLDQLC 377 (1051)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccchHH--HHHHHHHHHHHhhc--cchhHHHHHHHHHHHHHhc--ccChHHHHHHh
Confidence 8777888999999999999884 4333333 57899999999975 5677888888888887643 34677788899
Q ss_pred hCCcHHHHHHhhcCC----ChHHHHHHHHHHHHHhcCChhhHHHHHhcCCcHHHHHHHHHHhHHhh
Q 015709 305 DRFFLKSVVDLTASA----DLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVM 366 (402)
Q Consensus 305 ~~g~v~~Lv~lL~~~----d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~~~L~~L~~~~~~l~ 366 (402)
.+|++....+||... +..+-.-+.+.|..+++.....+..+- ..++-..|..+-++|..-.
T Consensus 378 s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~-k~~I~~~L~~il~g~s~s~ 442 (1051)
T KOG0168|consen 378 SHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLL-KLDIADTLKRILQGYSKSA 442 (1051)
T ss_pred chhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHH-HhhHHHHHHHHHhccCcCc
Confidence 999999999998765 344556667777777776544443333 5677778888777776643
No 38
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.93 E-value=0.00063 Score=76.98 Aligned_cols=28 Identities=18% Similarity=0.335 Sum_probs=17.0
Q ss_pred CcHHHHHHhhcCCChHHHHHHHHHHHHH
Q 015709 307 FFLKSVVDLTASADLDLQEKALAAIKNL 334 (402)
Q Consensus 307 g~v~~Lv~lL~~~d~dv~E~aL~aL~~L 334 (402)
..++.|+.+|..++..+|..|+.+|..+
T Consensus 838 ~a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 838 VAVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred chHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 3445666666666666666666666554
No 39
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.90 E-value=0.0014 Score=66.82 Aligned_cols=215 Identities=17% Similarity=0.152 Sum_probs=146.1
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHccC-CCCchhHHHh------cCCHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Q 015709 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVE-PIDNANDLSK------LGGLSVLVGQLNHPDTDIRKISAWILGKASQ 203 (402)
Q Consensus 131 ~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve-~iDnA~~l~~------lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aq 203 (402)
+..+-.+..+.... .+|...-.|--+.++.. +.--..-|+. ---|.+.+++|...+.-+...++++|+.+++
T Consensus 65 ~~v~~fi~LlS~~~-kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~ 143 (442)
T KOG2759|consen 65 QYVKTFINLLSHID-KDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLAC 143 (442)
T ss_pred HHHHHHHHHhchhh-hHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence 45555555555433 33444444444444443 3222223332 2358999999999999999999999999998
Q ss_pred CChHh---HHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHH
Q 015709 204 NNPLV---QKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRK 279 (402)
Q Consensus 204 NNp~~---Q~~~le~g~L~~Ll~LL~s-~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~k 279 (402)
+-+.. .+.-+..| .|-..+++ .++....-|+.+|..++|. ++-+..|+.++|+..|+.++.+...+..+|-.
T Consensus 144 ~g~~~~~~~e~~~~~~---~l~~~l~~~~~~~~~~~~~rcLQ~ll~~-~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYq 219 (442)
T KOG2759|consen 144 FGNCKMELSELDVYKG---FLKEQLQSSTNNDYIQFAARCLQTLLRV-DEYRYAFVIADGVSLLIRILASTKCGFQLQYQ 219 (442)
T ss_pred hccccccchHHHHHHH---HHHHHHhccCCCchHHHHHHHHHHHhcC-cchhheeeecCcchhhHHHHhccCcchhHHHH
Confidence 64421 11222223 33334444 4556788889999999996 56688999999999999999655568899999
Q ss_pred HHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCC-ChHHHHHHHHHHHHHhcCCh------h-hHHHHHhcCCc
Q 015709 280 AVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKALAAIKNLLQLRT------T-EALVLKDFCGL 351 (402)
Q Consensus 280 A~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~dv~E~aL~aL~~L~~~~~------~-~~~~~~~~~GL 351 (402)
.++++.-|.. +|...+.+...+.++.|+++++.. -..+..-++.++.++...++ . +.+++ .|++
T Consensus 220 sifciWlLtF------n~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv--~~~v 291 (442)
T KOG2759|consen 220 SIFCIWLLTF------NPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMV--LCKV 291 (442)
T ss_pred HHHHHHHhhc------CHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHH--hcCc
Confidence 9999998875 566667778889999999999865 45666666777778887763 1 12222 4777
Q ss_pred HHHHHHH
Q 015709 352 DTALERL 358 (402)
Q Consensus 352 ~~~L~~L 358 (402)
.+.+..|
T Consensus 292 ~k~l~~L 298 (442)
T KOG2759|consen 292 LKTLQSL 298 (442)
T ss_pred hHHHHHH
Confidence 6666665
No 40
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.88 E-value=6.3e-05 Score=62.95 Aligned_cols=67 Identities=18% Similarity=0.194 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCC--CHHHHHHHHHHHHHHhcCChhcHHHHHh
Q 015709 190 IRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS--FVEEAVKALYTVSSLIRNNLAGQEMFYV 256 (402)
Q Consensus 190 Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~--~~~vr~kAl~ALS~LiR~~~~~~~~f~~ 256 (402)
+|..-..+||+++.+|+.+|+.+.+.|+||.++..-.-+ +|-+|..|+|||-+++.+|+.+|+.+.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 466778999999999999999999999999999876644 4778999999999999999999987654
No 41
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=97.86 E-value=0.00012 Score=74.83 Aligned_cols=188 Identities=15% Similarity=0.115 Sum_probs=134.8
Q ss_pred hcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCC----CH---HHHHHHHHHHHHHh
Q 015709 172 KLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS----FV---EEAVKALYTVSSLI 244 (402)
Q Consensus 172 ~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~----~~---~vr~kAl~ALS~Li 244 (402)
..|.+++|.+..+|++.++-.+.++.+||+|..|.+.+..|.+.||-..+++.|+.. ++ +.-.-+..-|+|.+
T Consensus 85 ~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~ 164 (604)
T KOG4500|consen 85 DAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYI 164 (604)
T ss_pred HHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhh
Confidence 357788999999999999999999999999999999999999999977777777642 22 33456778889998
Q ss_pred cCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCC-ChHH
Q 015709 245 RNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDL 323 (402)
Q Consensus 245 R~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~dv 323 (402)
-++..-+.+..++|.++.|..++.-+..+..+..+......+|+.- ..+-..+...+..++..++.+|.+. ++|.
T Consensus 165 l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~----~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~ 240 (604)
T KOG4500|consen 165 LDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSF----VCEMLYPFCKDCSLVFMLLQLLPSMVREDI 240 (604)
T ss_pred CCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHH----HHHhhhhhhccchHHHHHHHHHHHhhccch
Confidence 8888889999999999999998875433333444444333344321 0122344556777888888988766 8899
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHhcCCcHHHHHHHHHHhHHh
Q 015709 324 QEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEV 365 (402)
Q Consensus 324 ~E~aL~aL~~L~~~~~~~~~~~~~~~GL~~~L~~L~~~~~~l 365 (402)
.|.....+...+....-+ -.+. ..|+-..+..|-+++...
T Consensus 241 ~eM~feila~~aend~Vk-l~la-~~gl~e~~~~lv~~~k~~ 280 (604)
T KOG4500|consen 241 DEMIFEILAKAAENDLVK-LSLA-QNGLLEDSIDLVRNMKDF 280 (604)
T ss_pred hhHHHHHHHHHhcCccee-eehh-hcchHHHHHHHHHhcccc
Confidence 999999998888775322 2344 344544444444454443
No 42
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.86 E-value=1.8e-05 Score=54.77 Aligned_cols=38 Identities=32% Similarity=0.691 Sum_probs=35.8
Q ss_pred CchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 015709 165 DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKAS 202 (402)
Q Consensus 165 DnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~a 202 (402)
++...+.+.||+|+|+++|+++++++|..|+|+|++++
T Consensus 3 ~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 3 ENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 56778999999999999999999999999999999987
No 43
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.85 E-value=0.00056 Score=77.37 Aligned_cols=123 Identities=11% Similarity=0.135 Sum_probs=90.2
Q ss_pred CCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHH
Q 015709 174 GGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEM 253 (402)
Q Consensus 174 Ggl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~ 253 (402)
+-...|+..|.++++.+|..|++.|+.+- ..+.|+.++.+++..+|..++.+|+.+-...
T Consensus 714 ~~~~~l~~~L~D~d~~VR~~Av~aL~~~~--------------~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~------ 773 (897)
T PRK13800 714 GDAALFAAALGDPDHRVRIEAVRALVSVD--------------DVESVAGAATDENREVRIAVAKGLATLGAGG------ 773 (897)
T ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHhccc--------------CcHHHHHHhcCCCHHHHHHHHHHHHHhcccc------
Confidence 34567788999999999999999999752 2245677888888899999999998774321
Q ss_pred HHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHH
Q 015709 254 FYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKN 333 (402)
Q Consensus 254 f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~ 333 (402)
..+++.|..+++++ ++.+|..|+.+|..+-. + ...+..+...|..+|..+|..|+.+|..
T Consensus 774 ---~~~~~~L~~ll~D~--d~~VR~aA~~aLg~~g~-------~--------~~~~~~l~~aL~d~d~~VR~~Aa~aL~~ 833 (897)
T PRK13800 774 ---APAGDAVRALTGDP--DPLVRAAALAALAELGC-------P--------PDDVAAATAALRASAWQVRQGAARALAG 833 (897)
T ss_pred ---chhHHHHHHHhcCC--CHHHHHHHHHHHHhcCC-------c--------chhHHHHHHHhcCCChHHHHHHHHHHHh
Confidence 12367788888876 56788888888876531 1 1123457777888888888888888877
Q ss_pred Hhc
Q 015709 334 LLQ 336 (402)
Q Consensus 334 L~~ 336 (402)
+-.
T Consensus 834 l~~ 836 (897)
T PRK13800 834 AAA 836 (897)
T ss_pred ccc
Confidence 764
No 44
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.84 E-value=0.00094 Score=70.08 Aligned_cols=203 Identities=18% Similarity=0.186 Sum_probs=137.8
Q ss_pred HhHHHHHHHHHHc-CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHH
Q 015709 112 KRQMEIKELMEKL-KTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDI 190 (402)
Q Consensus 112 ~r~~~L~ea~~~l-~~~~d~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~I 190 (402)
+|++-+++++-.. .|.+-.......+..+. +.+.+.|.-+.-.+..+.+.-.. +..+ .+..+.+-|+++++.+
T Consensus 22 ~~~~~l~kli~~~~~G~~~~~~~~~vi~l~~--s~~~~~Krl~yl~l~~~~~~~~~---~~~l-~~n~l~kdl~~~n~~~ 95 (526)
T PF01602_consen 22 KKKEALKKLIYLMMLGYDISFLFMEVIKLIS--SKDLELKRLGYLYLSLYLHEDPE---LLIL-IINSLQKDLNSPNPYI 95 (526)
T ss_dssp HHHHHHHHHHHHHHTT---GSTHHHHHCTCS--SSSHHHHHHHHHHHHHHTTTSHH---HHHH-HHHHHHHHHCSSSHHH
T ss_pred HHHHHHHHHHHHHHcCCCCchHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhcchh---HHHH-HHHHHHHhhcCCCHHH
Confidence 3555555554432 34333334444444444 23567777666666665543322 2222 5667778889999999
Q ss_pred HHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCC
Q 015709 191 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS 270 (402)
Q Consensus 191 r~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~ 270 (402)
|..|.+++++++ +|+.-+. .++.+.+++.++++-||.+|+.|+..+.+.+|..... . -++.|..+|.++
T Consensus 96 ~~lAL~~l~~i~--~~~~~~~-----l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~---~-~~~~l~~lL~d~ 164 (526)
T PF01602_consen 96 RGLALRTLSNIR--TPEMAEP-----LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVED---E-LIPKLKQLLSDK 164 (526)
T ss_dssp HHHHHHHHHHH---SHHHHHH-----HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHG---G-HHHHHHHHTTHS
T ss_pred HHHHHhhhhhhc--ccchhhH-----HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHH---H-HHHHHhhhccCC
Confidence 999999999998 5655544 4688999999999999999999999999988875443 1 378899999765
Q ss_pred CccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChh
Q 015709 271 SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTT 340 (402)
Q Consensus 271 ~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~ 340 (402)
++.++..|+.++..+ .. ++..... .-..+++.+..++...++-.+.+++..+..+......
T Consensus 165 --~~~V~~~a~~~l~~i-~~-----~~~~~~~-~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~ 225 (526)
T PF01602_consen 165 --DPSVVSAALSLLSEI-KC-----NDDSYKS-LIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPE 225 (526)
T ss_dssp --SHHHHHHHHHHHHHH-HC-----THHHHTT-HHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHH
T ss_pred --cchhHHHHHHHHHHH-cc-----Ccchhhh-hHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChh
Confidence 678999999999988 21 1111001 1234566667777888999999999999988876543
No 45
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.79 E-value=0.0016 Score=68.41 Aligned_cols=168 Identities=17% Similarity=0.172 Sum_probs=127.2
Q ss_pred HhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcH
Q 015709 139 DLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGAL 218 (402)
Q Consensus 139 ~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L 218 (402)
.+++...+.++|..++..|-.+.-.-. ++. -|++.++.++.+++..+|..+--.+......+|+.- ++ ++
T Consensus 12 ~~~~~~~~~~~~~~~l~kli~~~~~G~---~~~--~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~--~l---~~ 81 (526)
T PF01602_consen 12 ILNSFKIDISKKKEALKKLIYLMMLGY---DIS--FLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELL--IL---II 81 (526)
T ss_dssp HHHCSSTHHHHHHHHHHHHHHHHHTT------G--STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHH--HH---HH
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHHcCC---CCc--hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHH--HH---HH
Confidence 333332355677778777776543221 111 689999999999999999999999999999988732 22 46
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCC
Q 015709 219 SKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKV 298 (402)
Q Consensus 219 ~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~ 298 (402)
..+.+=+.++++.+|.-|+.+||++. .+...+. .++.+..++.++ ++.+|++|+.++..+... +|+
T Consensus 82 n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~-----l~~~v~~ll~~~--~~~VRk~A~~~l~~i~~~-----~p~ 147 (526)
T PF01602_consen 82 NSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEP-----LIPDVIKLLSDP--SPYVRKKAALALLKIYRK-----DPD 147 (526)
T ss_dssp HHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHH-----HHHHHHHHHHSS--SHHHHHHHHHHHHHHHHH-----CHC
T ss_pred HHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhH-----HHHHHHHHhcCC--chHHHHHHHHHHHHHhcc-----CHH
Confidence 77778888989999999999999986 4443333 467788888886 568999999999999852 333
Q ss_pred cchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHH
Q 015709 299 EPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNL 334 (402)
Q Consensus 299 ~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L 334 (402)
.+... +++.+..+|..+|+.++..|+.++..+
T Consensus 148 ---~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 148 ---LVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp ---CHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred ---HHHHH-HHHHHhhhccCCcchhHHHHHHHHHHH
Confidence 22233 799999999888999999999999999
No 46
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=97.76 E-value=0.00024 Score=72.64 Aligned_cols=148 Identities=16% Similarity=0.124 Sum_probs=117.2
Q ss_pred CCCCHHHHHHHHHHHHHHhcCChHhHHHHHHc----CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCc
Q 015709 184 NHPDTDIRKISAWILGKASQNNPLVQKQVLEL----GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG 259 (402)
Q Consensus 184 ~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~----g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gG 259 (402)
...+..++..+..|++..+. ||..+..|.++ ++++.|.+..+|++.++-.....||+|++..|..++.+|.+.||
T Consensus 52 ~~~~~tv~~~qssC~A~~sk-~ev~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgG 130 (604)
T KOG4500|consen 52 MTASDTVYLFQSSCLADRSK-NEVERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGG 130 (604)
T ss_pred eeccchhhhhhHHHHHHHhh-hHHHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCC
Confidence 44567889999999999995 56666666554 77899999999988899999999999999999999999999999
Q ss_pred HHHHHHhhcCC-----CccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCC--ChHHHHHHHHHHH
Q 015709 260 DLMLQDILGNS-----SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEKALAAIK 332 (402)
Q Consensus 260 i~~L~~lL~s~-----~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~--d~dv~E~aL~aL~ 332 (402)
-+++++.|+.- ..+.++-.-+..++.|-.- .+.+.+..+.+.|+++.|+.++.-+ +....|+.+....
T Consensus 131 aqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l-----~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~ 205 (604)
T KOG4500|consen 131 AQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL-----DSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFF 205 (604)
T ss_pred ceehHhhhccccccCCccHHHHHHHHHHHHHHhhC-----CcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccc
Confidence 88888877632 1233555556666766552 3567888899999999999987544 7778899988888
Q ss_pred HHhcC
Q 015709 333 NLLQL 337 (402)
Q Consensus 333 ~L~~~ 337 (402)
+|++.
T Consensus 206 nlls~ 210 (604)
T KOG4500|consen 206 NLLSF 210 (604)
T ss_pred cHHHH
Confidence 88765
No 47
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.75 E-value=0.00095 Score=74.90 Aligned_cols=176 Identities=15% Similarity=0.103 Sum_probs=127.8
Q ss_pred HHHHH----HhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcH
Q 015709 176 LSVLV----GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQ 251 (402)
Q Consensus 176 l~~Li----~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~ 251 (402)
+|++. .+|.|++..-|..|..+|+.++.+.+++-...+. ..++..+..|+++++-||-.|+.||+-+..+.++-.
T Consensus 346 ~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~i 424 (1075)
T KOG2171|consen 346 LPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEI 424 (1075)
T ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHH
Confidence 55554 4678999999999999999999886655444332 467777788888889999999999999999999988
Q ss_pred HHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHH-HHHHhhcCCChHHHHHHHHH
Q 015709 252 EMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLK-SVVDLTASADLDLQEKALAA 330 (402)
Q Consensus 252 ~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~-~Lv~lL~~~d~dv~E~aL~a 330 (402)
+.....--++.|+..+.++ .++|++..|+.++-++... ...+...-.. .+++. .+.-++.++.+.++|.++.+
T Consensus 425 qk~~~e~l~~aL~~~ld~~-~~~rV~ahAa~al~nf~E~----~~~~~l~pYL-d~lm~~~l~~L~~~~~~~v~e~vvta 498 (1075)
T KOG2171|consen 425 QKKHHERLPPALIALLDST-QNVRVQAHAAAALVNFSEE----CDKSILEPYL-DGLMEKKLLLLLQSSKPYVQEQAVTA 498 (1075)
T ss_pred HHHHHHhccHHHHHHhccc-CchHHHHHHHHHHHHHHHh----CcHHHHHHHH-HHHHHHHHHHHhcCCchhHHHHHHHH
Confidence 8888888888999999987 4789999999999998753 1222111111 23444 34445677799999999999
Q ss_pred HHHHhcCChhhHHHHHhcCCcHHHHHHHHHHhH
Q 015709 331 IKNLLQLRTTEALVLKDFCGLDTALERLRQQLQ 363 (402)
Q Consensus 331 L~~L~~~~~~~~~~~~~~~GL~~~L~~L~~~~~ 363 (402)
+.+.+... ...|. .-.+..+..|+.-++
T Consensus 499 IasvA~AA---~~~F~--pY~d~~Mp~L~~~L~ 526 (1075)
T KOG2171|consen 499 IASVADAA---QEKFI--PYFDRLMPLLKNFLQ 526 (1075)
T ss_pred HHHHHHHH---hhhhH--hHHHHHHHHHHHHHh
Confidence 99998653 33343 233444444444433
No 48
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=97.72 E-value=0.00064 Score=67.55 Aligned_cols=185 Identities=18% Similarity=0.122 Sum_probs=123.6
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCC----CCHHHHHHHHHHHHHHhcCChHhH
Q 015709 134 QIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH----PDTDIRKISAWILGKASQNNPLVQ 209 (402)
Q Consensus 134 k~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s----~~~~Ir~~Aa~vLg~~aqNNp~~Q 209 (402)
...+..+.++ +.--...|+..|..++..-+....-...+.++.++++|.+ ++.+++..|+.+++++.. ++..+
T Consensus 108 ~~fl~ll~~~--D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R 184 (312)
T PF03224_consen 108 SPFLKLLDRN--DSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYR 184 (312)
T ss_dssp HHHHHH-S-S--SHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHH
T ss_pred HHHHHHhcCC--CHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhH
Confidence 3344444443 3344566777777776554433333224556777777653 567788999999999995 68899
Q ss_pred HHHHHcCcHHHHHHhh-----cCCC--HHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHH
Q 015709 210 KQVLELGALSKLMKMV-----KSSF--VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVS 282 (402)
Q Consensus 210 ~~~le~g~L~~Ll~LL-----~s~~--~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~ 282 (402)
..|.+.|+++.|..++ .+.+ ..+.-.+++++=.+.- ++.....+...+-++.|.++++... ..|+.|-++.
T Consensus 185 ~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~L~~i~~~~~-KEKvvRv~la 262 (312)
T PF03224_consen 185 QVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSF-EPEIAEELNKKYLIPLLADILKDSI-KEKVVRVSLA 262 (312)
T ss_dssp HHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH---SHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhc-CHHHHHHHhccchHHHHHHHHHhcc-cchHHHHHHH
Confidence 9999999999999999 2223 3445677777666644 5777888889999999999999763 5799999999
Q ss_pred HHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCC--ChHHHHHH
Q 015709 283 LVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEKA 327 (402)
Q Consensus 283 lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~--d~dv~E~a 327 (402)
.+.||+.. ......+.++..|+++.+-.+.... |+|+.+-.
T Consensus 263 ~l~Nl~~~----~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl 305 (312)
T PF03224_consen 263 ILRNLLSK----APKSNIELMVLCGLLKTLQNLSERKWSDEDLTEDL 305 (312)
T ss_dssp HHHHTTSS----SSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHHHH
T ss_pred HHHHHHhc----cHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHHHH
Confidence 99999853 2333677777888887777776654 77776643
No 49
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.68 E-value=0.0023 Score=71.27 Aligned_cols=183 Identities=17% Similarity=0.140 Sum_probs=146.5
Q ss_pred HHHHHHHHHHccCCCCchhHHHh-cCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcC-
Q 015709 150 SQRALQELLILVEPIDNANDLSK-LGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS- 227 (402)
Q Consensus 150 k~~AL~~L~~Lve~iDnA~~l~~-lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s- 227 (402)
|.+||.-|..+++---.|-++.- .|-+|-++++|+++-.++|..=+.+=+.+-.-.|.||...++.+|-...++.|..
T Consensus 487 RlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~ 566 (1387)
T KOG1517|consen 487 RLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPS 566 (1387)
T ss_pred HHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCc
Confidence 56676666666554445655543 6889999999999999999999999999988889999999999888888888877
Q ss_pred CC--HHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHh
Q 015709 228 SF--VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD 305 (402)
Q Consensus 228 ~~--~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~ 305 (402)
.. ++-|.-|.+-|+.++++++.+|+...+.|-+.+-...|.++. .+-+|.=.+-+|.-|-.. .+ ..+=.=.+
T Consensus 567 ~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~-~pLLrQW~~icLG~LW~d----~~-~Arw~G~r 640 (1387)
T KOG1517|consen 567 QAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDP-EPLLRQWLCICLGRLWED----YD-EARWSGRR 640 (1387)
T ss_pred CCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCc-cHHHHHHHHHHHHHHhhh----cc-hhhhcccc
Confidence 32 467899999999999999999999999998888888888753 566777777777776532 22 22212235
Q ss_pred CCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCC
Q 015709 306 RFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 338 (402)
Q Consensus 306 ~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~ 338 (402)
.+....|..+|..+-++||..|+.||.+++...
T Consensus 641 ~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 641 DNAHEKLILLLSDPVPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred ccHHHHHHHHhcCccHHHHHHHHHHHHHHhccc
Confidence 678889999999999999999999999999864
No 50
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.66 E-value=0.0031 Score=68.58 Aligned_cols=220 Identities=20% Similarity=0.216 Sum_probs=164.9
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCC--CCHHHHHHHHHHHHHHhcC
Q 015709 127 PSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH--PDTDIRKISAWILGKASQN 204 (402)
Q Consensus 127 ~~d~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s--~~~~Ir~~Aa~vLg~~aqN 204 (402)
++.++.+.++.+.+.+.. =+++|..|+..|--+.... +.-+...|+++||+.|.. .++++-..|..++..+..+
T Consensus 18 ~s~aETI~kLcDRvessT-L~eDRR~A~rgLKa~srkY---R~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~ 93 (970)
T KOG0946|consen 18 QSAAETIEKLCDRVESST-LLEDRRDAVRGLKAFSRKY---REEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSH 93 (970)
T ss_pred ccHHhHHHHHHHHHhhcc-chhhHHHHHHHHHHHHHHH---HHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhc
Confidence 456677888888887754 3577877777776544332 345567799999999954 7899999999999999887
Q ss_pred Ch--------H--------hHHHHHH-cCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhc-HHHHHh-cCcHHHHHH
Q 015709 205 NP--------L--------VQKQVLE-LGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG-QEMFYV-EAGDLMLQD 265 (402)
Q Consensus 205 Np--------~--------~Q~~~le-~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~-~~~f~~-~gGi~~L~~ 265 (402)
.+ . ..+.|++ .+.|..|+..+...+--||..++--|++++++-|.- ++.+.. --||..|+.
T Consensus 94 dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmd 173 (970)
T KOG0946|consen 94 DDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMD 173 (970)
T ss_pred CcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHH
Confidence 52 2 2233443 377888999998878789999999999999986654 555554 469999999
Q ss_pred hhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCC---Ch-HHHHHHHHHHHHHhcCChhh
Q 015709 266 ILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA---DL-DLQEKALAAIKNLLQLRTTE 341 (402)
Q Consensus 266 lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~---d~-dv~E~aL~aL~~L~~~~~~~ 341 (402)
+|.+.. . -+|-.++.+|..|.. .++.....+.=.++...|.+++... |- -+.+-++..|.+|+......
T Consensus 174 lL~Dsr-E-~IRNe~iLlL~eL~k-----~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SN 246 (970)
T KOG0946|consen 174 LLRDSR-E-PIRNEAILLLSELVK-----DNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISN 246 (970)
T ss_pred HHhhhh-h-hhchhHHHHHHHHHc-----cCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcch
Confidence 999763 3 389999999999984 3556555555567788888888654 22 47899999999999987666
Q ss_pred HHHHHhcCCcHHHHHHH
Q 015709 342 ALVLKDFCGLDTALERL 358 (402)
Q Consensus 342 ~~~~~~~~GL~~~L~~L 358 (402)
...|+ +++.-+.|.+|
T Consensus 247 Q~~Fr-E~~~i~rL~kl 262 (970)
T KOG0946|consen 247 QNFFR-EGSYIPRLLKL 262 (970)
T ss_pred hhHHh-ccccHHHHHhh
Confidence 77888 88876666655
No 51
>PF05536 Neurochondrin: Neurochondrin
Probab=97.63 E-value=0.0028 Score=67.95 Aligned_cols=153 Identities=16% Similarity=0.183 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCc-h---hHHHhcCCHHHHHHhcCC-------CCHHHHHHHHHH
Q 015709 129 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDN-A---NDLSKLGGLSVLVGQLNH-------PDTDIRKISAWI 197 (402)
Q Consensus 129 d~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDn-A---~~l~~lGgl~~Li~lL~s-------~~~~Ir~~Aa~v 197 (402)
..+.+++++..|+... .+.|..+|--+-.++.+-|. + +.+.+.=|..-|-++|.+ +....+..|..+
T Consensus 3 ~~~~l~~c~~lL~~~~--D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~Lavsv 80 (543)
T PF05536_consen 3 QSASLEKCLSLLKSAD--DTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSV 80 (543)
T ss_pred chHHHHHHHHHhccCC--cHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHH
Confidence 3567888999998876 47899999999999987653 2 125555568888889977 457899999999
Q ss_pred HHHHhcCChHhH--HHHHHcCcHHHHHHhhcCCCH-HHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccH
Q 015709 198 LGKASQNNPLVQ--KQVLELGALSKLMKMVKSSFV-EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEI 274 (402)
Q Consensus 198 Lg~~aqNNp~~Q--~~~le~g~L~~Ll~LL~s~~~-~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~ 274 (402)
|++.+. .|... ..++ +-||.|+.++.+.+. ++...++..|.+++ .+|.+++.|++.|+++.|.+++.+. .
T Consensus 81 L~~f~~-~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~~---~ 153 (543)
T PF05536_consen 81 LAAFCR-DPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPNQ---S 153 (543)
T ss_pred HHHHcC-ChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHhC---c
Confidence 999998 45443 2333 469999999988776 88889999999998 7899999999999999999999874 3
Q ss_pred HHHHHHHHHHHHHhhc
Q 015709 275 RLHRKAVSLVGDLAKC 290 (402)
Q Consensus 275 klq~kA~~lL~~L~~~ 290 (402)
.....|+.++.+++..
T Consensus 154 ~~~E~Al~lL~~Lls~ 169 (543)
T PF05536_consen 154 FQMEIALNLLLNLLSR 169 (543)
T ss_pred chHHHHHHHHHHHHHh
Confidence 4678899999998863
No 52
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=97.56 E-value=0.00012 Score=62.97 Aligned_cols=86 Identities=22% Similarity=0.282 Sum_probs=66.9
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHH-hcCCHHHHHHhcCCCCHHHHHHHHH
Q 015709 118 KELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLS-KLGGLSVLVGQLNHPDTDIRKISAW 196 (402)
Q Consensus 118 ~ea~~~l~~~~d~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~-~lGgl~~Li~lL~s~~~~Ir~~Aa~ 196 (402)
+|-...| ..++.+++|.++++|..+. ++.....|+.+|.++|....+.+.++ ++|+=..++.++++++++||..|..
T Consensus 31 ~ENa~kf-~~~~~~llk~L~~lL~~s~-d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~ 108 (119)
T PF11698_consen 31 RENADKF-EENNFELLKKLIKLLDKSD-DPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALL 108 (119)
T ss_dssp HHHSGGG-SSGGGHHHHHHHHHH-SHH-HHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHH
T ss_pred HHHHHHH-HHcccHHHHHHHHHHccCC-CcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHH
Confidence 3333444 2367899999999996654 55667789999999999888888766 5788888889999999999999999
Q ss_pred HHHHHhcCC
Q 015709 197 ILGKASQNN 205 (402)
Q Consensus 197 vLg~~aqNN 205 (402)
++..+..+|
T Consensus 109 avQklm~~~ 117 (119)
T PF11698_consen 109 AVQKLMVNN 117 (119)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHhc
Confidence 999887654
No 53
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.53 E-value=0.0025 Score=68.03 Aligned_cols=140 Identities=14% Similarity=0.145 Sum_probs=113.6
Q ss_pred CHHHHHHHHHHHHH---ccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHH
Q 015709 146 SLEDSQRALQELLI---LVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLM 222 (402)
Q Consensus 146 t~e~k~~AL~~L~~---Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll 222 (402)
+.+..-.|+..+.. .|...++. +-...+..||+++|..|+..|+..+..+|.|++-.-...|..|+.+|+|..|.
T Consensus 390 d~~~~aaa~l~~~s~srsV~aL~tg--~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~ 467 (678)
T KOG1293|consen 390 DHDFVAAALLCLKSFSRSVSALRTG--LKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILE 467 (678)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHcC--CccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHH
Confidence 44455555555544 34444444 77788999999999999999999999999999988777899999999999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhcCChh-cHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015709 223 KMVKSSFVEEAVKALYTVSSLIRNNLA-GQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (402)
Q Consensus 223 ~LL~s~~~~vr~kAl~ALS~LiR~~~~-~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~ 289 (402)
+++.+.+..+|.+++|+|-.+.-+... -+.++..-=+...|..+..++ +..+|..+..++.||.-
T Consensus 468 s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~--d~~Vqeq~fqllRNl~c 533 (678)
T KOG1293|consen 468 SMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDP--DWAVQEQCFQLLRNLTC 533 (678)
T ss_pred HHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCC--CHHHHHHHHHHHHHhhc
Confidence 999999999999999999998877543 344455555777778888876 78899999999999974
No 54
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=97.50 E-value=0.0017 Score=67.13 Aligned_cols=176 Identities=18% Similarity=0.150 Sum_probs=133.0
Q ss_pred hcCCHHHHHHhcCCCCH--HHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCCh
Q 015709 172 KLGGLSVLVGQLNHPDT--DIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNL 248 (402)
Q Consensus 172 ~lGgl~~Li~lL~s~~~--~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~-~~vr~kAl~ALS~LiR~~~ 248 (402)
.-||+..|+.++.+++- .+|..|+.+|-.+.. .++.+.+...| +..++.+.+... .+.+...+.-|.+|-+|+.
T Consensus 178 ~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSe 254 (832)
T KOG3678|consen 178 LDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSE 254 (832)
T ss_pred ccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhH
Confidence 45899999999988774 569999999988764 34677777766 677777776544 5677888999999999998
Q ss_pred hcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHH
Q 015709 249 AGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKAL 328 (402)
Q Consensus 249 ~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL 328 (402)
...+.++.+||+..++--++.. ++.+-+.++.++.|.+-+ ...+....+++..+.+.|.-+-.+.|.-++-+|.
T Consensus 255 et~~~Lvaa~~lD~vl~~~rRt--~P~lLRH~ALAL~N~~L~----~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AC 328 (832)
T KOG3678|consen 255 ETCQRLVAAGGLDAVLYWCRRT--DPALLRHCALALGNCALH----GGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHAC 328 (832)
T ss_pred HHHHHHHhhcccchheeecccC--CHHHHHHHHHHhhhhhhh----chhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHH
Confidence 8899999999999988777654 677888999999998754 2344555666767777777776677888899999
Q ss_pred HHHHHHhcCChhhHHHHHhcCCcHHHHHHH
Q 015709 329 AAIKNLLQLRTTEALVLKDFCGLDTALERL 358 (402)
Q Consensus 329 ~aL~~L~~~~~~~~~~~~~~~GL~~~L~~L 358 (402)
.|++.|+...+-.|. ++ ..|-..+++-|
T Consensus 329 lAV~vlat~KE~E~~-Vr-kS~TlaLVEPl 356 (832)
T KOG3678|consen 329 LAVAVLATNKEVERE-VR-KSGTLALVEPL 356 (832)
T ss_pred HHHhhhhhhhhhhHH-Hh-hccchhhhhhh
Confidence 999999988654443 44 34433444443
No 55
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=97.47 E-value=0.0013 Score=75.12 Aligned_cols=178 Identities=17% Similarity=0.095 Sum_probs=138.0
Q ss_pred HHHHHHccCC--CCchhHHHhcCCHHHHHHhc-CCCCHHHHHHHHHHHHHHhcCChHhHHHHHH-cCcHHHHHHhhcCCC
Q 015709 154 LQELLILVEP--IDNANDLSKLGGLSVLVGQL-NHPDTDIRKISAWILGKASQNNPLVQKQVLE-LGALSKLMKMVKSSF 229 (402)
Q Consensus 154 L~~L~~Lve~--iDnA~~l~~lGgl~~Li~lL-~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le-~g~L~~Ll~LL~s~~ 229 (402)
-..|.+|... +.+...|...|-+..|..+- ....+.-....+.+|=|++....+++..|.. -|+|..|+.+|+-+.
T Consensus 415 AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~ 494 (2195)
T KOG2122|consen 415 ASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEG 494 (2195)
T ss_pred HHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccC
Confidence 3455666643 44567788899999998864 4333233334455555555555555555554 489999999998653
Q ss_pred ----HHHHH---HHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchh
Q 015709 230 ----VEEAV---KALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPL 302 (402)
Q Consensus 230 ----~~vr~---kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~ 302 (402)
..+.. --|.-+|++|..+.+-++...+++-+..|++.|++. ...+..+++..|.||.. -++..++.
T Consensus 495 qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~--SLTiVSNaCGTLWNLSA-----R~p~DQq~ 567 (2195)
T KOG2122|consen 495 QSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSH--SLTIVSNACGTLWNLSA-----RSPEDQQM 567 (2195)
T ss_pred CcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhc--ceEEeecchhhhhhhhc-----CCHHHHHH
Confidence 12332 457888999999999999999999999999999997 45678899999999984 47888999
Q ss_pred HHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCC
Q 015709 303 FRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 338 (402)
Q Consensus 303 l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~ 338 (402)
|.+.|.|..|.+++.+.+..+.+-+..+|.+|+...
T Consensus 568 LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 568 LWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred HHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 999999999999999999999999999999999876
No 56
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.44 E-value=0.0005 Score=71.91 Aligned_cols=142 Identities=11% Similarity=0.079 Sum_probs=113.2
Q ss_pred HHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCC
Q 015709 192 KISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSS 271 (402)
Q Consensus 192 ~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~ 271 (402)
..++.+|-+++..-...+.-..++...++|+++|++++..+..-+..++++.+-.+.+-+..|+..|-+..|+.++.++
T Consensus 407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK- 485 (743)
T COG5369 407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK- 485 (743)
T ss_pred HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc-
Confidence 3445556666665555666666777899999999886666677889999999988999999999999999999999976
Q ss_pred ccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCCh
Q 015709 272 FEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT 339 (402)
Q Consensus 272 ~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~ 339 (402)
|..+|.++.|.++++..+ .+...+-.+...-.+..++++.+.++-.+|++++..|.++.+++.
T Consensus 486 -DdaLqans~wvlrHlmyn----cq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~ 548 (743)
T COG5369 486 -DDALQANSEWVLRHLMYN----CQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTS 548 (743)
T ss_pred -hhhhhhcchhhhhhhhhc----CcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccc
Confidence 567999999999999864 222222233444567889999999999999999999999998653
No 57
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.38 E-value=0.00063 Score=53.84 Aligned_cols=86 Identities=16% Similarity=0.243 Sum_probs=66.4
Q ss_pred HHHHHHhh-cCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCC
Q 015709 218 LSKLMKMV-KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMH 296 (402)
Q Consensus 218 L~~Ll~LL-~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~ 296 (402)
||.|++.+ +++++.+|..|+++|+.+ +.+ ..++.|..+++++ ++.+|..|++++..+-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~--~~~---------~~~~~L~~~l~d~--~~~vr~~a~~aL~~i~-------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL--GDP---------EAIPALIELLKDE--DPMVRRAAARALGRIG-------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC--THH---------HHHHHHHHHHTSS--SHHHHHHHHHHHHCCH--------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc--CCH---------hHHHHHHHHHcCC--CHHHHHHHHHHHHHhC--------
Confidence 68899999 777789999999999943 111 3488999999775 7889999999998753
Q ss_pred CCcchhHHhCCcHHHHHHhhcCC-ChHHHHHHHHHHH
Q 015709 297 KVEPPLFRDRFFLKSVVDLTASA-DLDLQEKALAAIK 332 (402)
Q Consensus 297 ~~~~~~l~~~g~v~~Lv~lL~~~-d~dv~E~aL~aL~ 332 (402)
+...++.|.+++.++ +..++..|+.+|.
T Consensus 60 --------~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 --------DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --------HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --------CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 234788899988886 5566888887764
No 58
>PTZ00429 beta-adaptin; Provisional
Probab=97.37 E-value=0.016 Score=64.18 Aligned_cols=159 Identities=12% Similarity=0.146 Sum_probs=96.7
Q ss_pred HhHHHHHHHHHHc-CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccC-CCCchhHHHhcCCHHHHHHhcCCCCHH
Q 015709 112 KRQMEIKELMEKL-KTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVE-PIDNANDLSKLGGLSVLVGQLNHPDTD 189 (402)
Q Consensus 112 ~r~~~L~ea~~~l-~~~~d~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve-~iDnA~~l~~lGgl~~Li~lL~s~~~~ 189 (402)
+|++-+|+++..+ .|.+-..+.-..++.+.+. +.+.|.-..--+..+.+ +.|.+- =.+..+.+-++++||-
T Consensus 48 ~kk~alKkvIa~mt~G~DvS~LF~dVvk~~~S~--d~elKKLvYLYL~~ya~~~pelal-----LaINtl~KDl~d~Np~ 120 (746)
T PTZ00429 48 RKKAAVKRIIANMTMGRDVSYLFVDVVKLAPST--DLELKKLVYLYVLSTARLQPEKAL-----LAVNTFLQDTTNSSPV 120 (746)
T ss_pred HHHHHHHHHHHHHHCCCCchHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcccChHHHH-----HHHHHHHHHcCCCCHH
Confidence 3556666666655 3445445555555544443 45666555555544443 222221 1345566677778888
Q ss_pred HHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcC
Q 015709 190 IRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGN 269 (402)
Q Consensus 190 Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s 269 (402)
||..|.++++.+- .|..-+. .++.+.+.+.+.++-||++|+.|+..+-+.+|. .+.+.|=++.|..+|.+
T Consensus 121 IRaLALRtLs~Ir--~~~i~e~-----l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D 190 (746)
T PTZ00429 121 VRALAVRTMMCIR--VSSVLEY-----TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLND 190 (746)
T ss_pred HHHHHHHHHHcCC--cHHHHHH-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcC
Confidence 8888888888775 3433332 346667777777777888888888888776663 33344555667777765
Q ss_pred CCccHHHHHHHHHHHHHHhh
Q 015709 270 SSFEIRLHRKAVSLVGDLAK 289 (402)
Q Consensus 270 ~~~d~klq~kA~~lL~~L~~ 289 (402)
. ++.++..|+.++..+..
T Consensus 191 ~--dp~Vv~nAl~aL~eI~~ 208 (746)
T PTZ00429 191 N--NPVVASNAAAIVCEVND 208 (746)
T ss_pred C--CccHHHHHHHHHHHHHH
Confidence 4 55677777777777753
No 59
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.36 E-value=0.00035 Score=47.38 Aligned_cols=39 Identities=31% Similarity=0.535 Sum_probs=35.9
Q ss_pred CchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Q 015709 165 DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQ 203 (402)
Q Consensus 165 DnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aq 203 (402)
+++..+.+.||+++|+++|.+++++++..|+|+|++++.
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 477889999999999999999999999999999999873
No 60
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.35 E-value=0.022 Score=64.38 Aligned_cols=207 Identities=19% Similarity=0.159 Sum_probs=138.8
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHh----cC--CHHHHHHhcCC--CC--------------HH
Q 015709 132 LIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSK----LG--GLSVLVGQLNH--PD--------------TD 189 (402)
Q Consensus 132 lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~----lG--gl~~Li~lL~s--~~--------------~~ 189 (402)
+++-.+++..|.+.+...|..||+.|--+++. |-.+.+ .| .++.++..... .+ ..
T Consensus 248 ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~---Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~ 324 (1075)
T KOG2171|consen 248 IIQFSLEIAKNKELENSIRHLALEFLVSLSEY---APAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEET 324 (1075)
T ss_pred HHHHHHHHhhcccccHHHHHHHHHHHHHHHHh---hHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccC
Confidence 44556667788888888999999999888886 444433 22 24444444321 11 22
Q ss_pred HHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcC
Q 015709 190 IRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGN 269 (402)
Q Consensus 190 Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s 269 (402)
--..|.++|-.++.+=+..+-.- -.++.+-.++.|.+-..|..|+.|||.+..|++.....- --..+++....|++
T Consensus 325 ~~~~A~~~lDrlA~~L~g~~v~p---~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~-l~~Il~~Vl~~l~D 400 (1075)
T KOG2171|consen 325 PYRAAEQALDRLALHLGGKQVLP---PLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGN-LPKILPIVLNGLND 400 (1075)
T ss_pred cHHHHHHHHHHHHhcCChhhehH---HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHH-HHHHHHHHHhhcCC
Confidence 45567777777766533222211 135666678888888889999999999999987654442 23577888888898
Q ss_pred CCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCC-ChHHHHHHHHHHHHHhcCChhhHHHHHhc
Q 015709 270 SSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKALAAIKNLLQLRTTEALVLKDF 348 (402)
Q Consensus 270 ~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~dv~E~aL~aL~~L~~~~~~~~~~~~~~ 348 (402)
+ ++++|--|+.+|+.+.+. -.+..... ..+-+++.|+..+.+. ++.++-+|..|+.++.... ....+.
T Consensus 401 p--hprVr~AA~naigQ~std----l~p~iqk~-~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~--~~~~l~-- 469 (1075)
T KOG2171|consen 401 P--HPRVRYAALNAIGQMSTD----LQPEIQKK-HHERLPPALIALLDSTQNVRVQAHAAAALVNFSEEC--DKSILE-- 469 (1075)
T ss_pred C--CHHHHHHHHHHHHhhhhh----hcHHHHHH-HHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhC--cHHHHH--
Confidence 7 689999999999998752 22333222 2346777888888776 7899999999999998653 223343
Q ss_pred CCcHHHHH
Q 015709 349 CGLDTALE 356 (402)
Q Consensus 349 ~GL~~~L~ 356 (402)
.-|+..++
T Consensus 470 pYLd~lm~ 477 (1075)
T KOG2171|consen 470 PYLDGLME 477 (1075)
T ss_pred HHHHHHHH
Confidence 45566666
No 61
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.32 E-value=0.01 Score=60.71 Aligned_cols=184 Identities=17% Similarity=0.131 Sum_probs=134.1
Q ss_pred CCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHh
Q 015709 145 LSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 224 (402)
Q Consensus 145 ~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~L 224 (402)
....+|+.||.-+..+++-.+..+. ...|.+..++.+..+++..+|..+..+|..++--||. .+.+.||+..|++.
T Consensus 80 ~~~~ER~QALkliR~~l~~~~~~~~-~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~ 155 (371)
T PF14664_consen 80 KNDVEREQALKLIRAFLEIKKGPKE-IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRA 155 (371)
T ss_pred CChHHHHHHHHHHHHHHHhcCCccc-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHH
Confidence 3457899999999888875444444 4778899999999999999999999999999999994 57789999999999
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCC-----CccH--HHHHHHHHHHHHHhhcccccCCC
Q 015709 225 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS-----SFEI--RLHRKAVSLVGDLAKCQLENMHK 297 (402)
Q Consensus 225 L~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~-----~~d~--klq~kA~~lL~~L~~~~l~~~~~ 297 (402)
+-+++.++....+.++-.++ ++|..++.+...--++.+..-+.+. +.+. ..-..+..++..+..+ =+
T Consensus 156 l~d~~~~~~~~l~~~lL~lL-d~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~Lrs-----W~ 229 (371)
T PF14664_consen 156 LIDGSFSISESLLDTLLYLL-DSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRS-----WP 229 (371)
T ss_pred HHhccHhHHHHHHHHHHHHh-CCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhc-----CC
Confidence 98866566777788888776 4566566555434555555555433 1121 2334566677766642 22
Q ss_pred CcchhHHh-CCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCC
Q 015709 298 VEPPLFRD-RFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 338 (402)
Q Consensus 298 ~~~~~l~~-~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~ 338 (402)
...-.-.. ...++.|++.|..+++++++..+..+..+....
T Consensus 230 GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dllrik 271 (371)
T PF14664_consen 230 GLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLRIK 271 (371)
T ss_pred ceeeeecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCC
Confidence 22211112 257999999999999999999999999998764
No 62
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.23 E-value=0.00086 Score=45.41 Aligned_cols=39 Identities=26% Similarity=0.348 Sum_probs=35.2
Q ss_pred hHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 015709 206 PLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLI 244 (402)
Q Consensus 206 p~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~Li 244 (402)
+..+..+++.|+++.|++++++++..++..|+|+|++++
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 346778899999999999999888999999999999986
No 63
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.19 E-value=0.014 Score=59.66 Aligned_cols=202 Identities=15% Similarity=0.116 Sum_probs=146.4
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCC--CCHHHHHHHHHHHHHHhcCCh
Q 015709 129 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH--PDTDIRKISAWILGKASQNNP 206 (402)
Q Consensus 129 d~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s--~~~~Ir~~Aa~vLg~~aqNNp 206 (402)
+.++-+.-++.+-+.+.+.+-...+...|..++.-....-.|+...|...++..|.+ .+-.++-+.+.|+=-++-| |
T Consensus 153 e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn-~ 231 (442)
T KOG2759|consen 153 ELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFN-P 231 (442)
T ss_pred HHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcC-H
Confidence 555555555555444445566777788888888877788899999999999998833 5677888888888888865 5
Q ss_pred HhHHHHHHcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCChh------------------------------------
Q 015709 207 LVQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLA------------------------------------ 249 (402)
Q Consensus 207 ~~Q~~~le~g~L~~Ll~LL~s~~-~~vr~kAl~ALS~LiR~~~~------------------------------------ 249 (402)
..-+.+...+.|+.|.++++++. +.|-+-.+..+-|++-..+.
T Consensus 232 ~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~d 311 (442)
T KOG2759|consen 232 HAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDD 311 (442)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHH
Confidence 55566778899999999998754 34444555566666655431
Q ss_pred --------------------------------------------cHHHHHhc--CcHHHHHHhhcCCCccHHHHHHHHHH
Q 015709 250 --------------------------------------------GQEMFYVE--AGDLMLQDILGNSSFEIRLHRKAVSL 283 (402)
Q Consensus 250 --------------------------------------------~~~~f~~~--gGi~~L~~lL~s~~~d~klq~kA~~l 283 (402)
+.+.|.+. --+..|+.+|++.+ |+.+-.-|++=
T Consensus 312 i~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~-Dp~iL~VAc~D 390 (442)
T KOG2759|consen 312 IEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSN-DPIILCVACHD 390 (442)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCC-CCceeehhhhh
Confidence 44444432 25566777777653 45555567776
Q ss_pred HHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcC
Q 015709 284 VGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 337 (402)
Q Consensus 284 L~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~ 337 (402)
|+...+. .|..+..+.+.|+=..+.++|+++|++++=+|+.|+..|...
T Consensus 391 Ige~Vr~-----yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 391 IGEYVRH-----YPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred HHHHHHh-----CchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence 7766643 577788888999999999999999999999999999998754
No 64
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=97.11 E-value=0.0057 Score=53.95 Aligned_cols=126 Identities=10% Similarity=0.069 Sum_probs=95.7
Q ss_pred HHHHHHhc-CCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHH
Q 015709 176 LSVLVGQL-NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF 254 (402)
Q Consensus 176 l~~Li~lL-~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f 254 (402)
+..|+.-. +..+.+-+.+...=|++.+. .|.+-....+.+++...+.-+...+.....-++.+|+|+|-+ +.+.+-+
T Consensus 18 lq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d-~~n~~~I 95 (173)
T KOG4646|consen 18 LQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLD-KTNAKFI 95 (173)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccC-hHHHHHH
Confidence 44455433 55778888887777888885 688999999999999999999998888899999999999875 5667777
Q ss_pred HhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHH
Q 015709 255 YVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLK 310 (402)
Q Consensus 255 ~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~ 310 (402)
.+++|++.++.++.|+ .......|+.++..|+. .+-..++.+....++.
T Consensus 96 ~ea~g~plii~~lssp--~e~tv~sa~~~l~~l~~-----~~Rt~r~ell~p~Vv~ 144 (173)
T KOG4646|consen 96 REALGLPLIIFVLSSP--PEITVHSAALFLQLLEF-----GERTERDELLSPAVVR 144 (173)
T ss_pred HHhcCCceEEeecCCC--hHHHHHHHHHHHHHhcC-----cccchhHHhccHHHHH
Confidence 8999999999999997 33455566777777763 3445555555444333
No 65
>PTZ00429 beta-adaptin; Provisional
Probab=97.04 E-value=0.057 Score=59.98 Aligned_cols=164 Identities=15% Similarity=0.108 Sum_probs=125.6
Q ss_pred CHHHHHHHHHHHHHcc-CCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHh
Q 015709 146 SLEDSQRALQELLILV-EPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 224 (402)
Q Consensus 146 t~e~k~~AL~~L~~Lv-e~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~L 224 (402)
+...|..++..+-.+. ...|... +++-++.++.+++.++|....-.+.+.+..+|+.- ++ ++..|.+=
T Consensus 45 ~~~~kk~alKkvIa~mt~G~DvS~------LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pela--lL---aINtl~KD 113 (746)
T PTZ00429 45 DSYRKKAAVKRIIANMTMGRDVSY------LFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKA--LL---AVNTFLQD 113 (746)
T ss_pred CHHHHHHHHHHHHHHHHCCCCchH------HHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHH--HH---HHHHHHHH
Confidence 3466777776665543 4444333 57778899999999999999999999998888643 22 46777888
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHH
Q 015709 225 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR 304 (402)
Q Consensus 225 L~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~ 304 (402)
+.+.++-+|.-|+.++|++. . +...+. .+..+.+++.++ ++.+|++|+.++..+.. .+++ .+.
T Consensus 114 l~d~Np~IRaLALRtLs~Ir-~-~~i~e~-----l~~~lkk~L~D~--~pYVRKtAalai~Kly~-----~~pe---lv~ 176 (746)
T PTZ00429 114 TTNSSPVVRALAVRTMMCIR-V-SSVLEY-----TLEPLRRAVADP--DPYVRKTAAMGLGKLFH-----DDMQ---LFY 176 (746)
T ss_pred cCCCCHHHHHHHHHHHHcCC-c-HHHHHH-----HHHHHHHHhcCC--CHHHHHHHHHHHHHHHh-----hCcc---ccc
Confidence 88888999999999999973 2 332332 345678888875 68899999999999874 2343 345
Q ss_pred hCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcC
Q 015709 305 DRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 337 (402)
Q Consensus 305 ~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~ 337 (402)
+.|+++.|.++|...|+.++-.|+.+|..+...
T Consensus 177 ~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~ 209 (746)
T PTZ00429 177 QQDFKKDLVELLNDNNPVVASNAAAIVCEVNDY 209 (746)
T ss_pred ccchHHHHHHHhcCCCccHHHHHHHHHHHHHHh
Confidence 678999999999999999999999999998754
No 66
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.99 E-value=0.0024 Score=53.53 Aligned_cols=67 Identities=9% Similarity=0.054 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHH
Q 015709 233 AVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR 304 (402)
Q Consensus 233 r~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~ 304 (402)
|...+-.|++++-.++..|+.+.+.||++.+.++..-+..++-+|..|.|+|.+|+.. +++.+..+.
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~-----n~eNQ~~I~ 69 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEG-----NPENQEFIA 69 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhC-----CHHHHHHHH
Confidence 5567788999999999999999999999999999876656899999999999999953 445444443
No 67
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.029 Score=62.97 Aligned_cols=135 Identities=19% Similarity=0.202 Sum_probs=105.3
Q ss_pred HHHHHHHHHHccC-CCCchhHHHh----cCCHHHHHHhcC-CCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHH
Q 015709 150 SQRALQELLILVE-PIDNANDLSK----LGGLSVLVGQLN-HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMK 223 (402)
Q Consensus 150 k~~AL~~L~~Lve-~iDnA~~l~~----lGgl~~Li~lL~-s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~ 223 (402)
..-+|..|.+++. +.|.|..|-. +|-++.++.+|. +.++.|+..|..++.-+..|-| |-+.+.+.|.+..|+.
T Consensus 1742 v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~-Cv~~~a~~~vL~~LL~ 1820 (2235)
T KOG1789|consen 1742 VLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKE-CVTDLATCNVLTTLLT 1820 (2235)
T ss_pred HHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccH-HHHHHHhhhHHHHHHH
Confidence 3457888888774 6788877755 788999999884 5889999999999998887655 7778888999999999
Q ss_pred hhcCCCHHHHH---HHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcc
Q 015709 224 MVKSSFVEEAV---KALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ 291 (402)
Q Consensus 224 LL~s~~~~vr~---kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~ 291 (402)
||.|.+ +.|. ..+|||++ ++....+-.++||+..|..++-.. +.+..|..|+.++.-|..+.
T Consensus 1821 lLHS~P-S~R~~vL~vLYAL~S----~~~i~keA~~hg~l~yil~~~c~~-~~~QqRAqaAeLlaKl~Adk 1885 (2235)
T KOG1789|consen 1821 LLHSQP-SMRARVLDVLYALSS----NGQIGKEALEHGGLMYILSILCLT-NSDQQRAQAAELLAKLQADK 1885 (2235)
T ss_pred HHhcCh-HHHHHHHHHHHHHhc----CcHHHHHHHhcCchhhhhHHHhcc-CcHHHHHHHHHHHHHhhhcc
Confidence 998744 4454 45666653 456667778899999988887654 25668889999999998654
No 68
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=96.94 E-value=0.046 Score=56.93 Aligned_cols=157 Identities=14% Similarity=0.015 Sum_probs=118.6
Q ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHhcCChHhHHHHHHc-----CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh
Q 015709 176 LSVLVGQLN-HPDTDIRKISAWILGKASQNNPLVQKQVLEL-----GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA 249 (402)
Q Consensus 176 l~~Li~lL~-s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~-----g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~ 249 (402)
...++++|+ .+++++..+....+.-+.+.+|.....|.+. ....+++.+|..++..+..+|++.|+.++...+.
T Consensus 55 ~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~ 134 (429)
T cd00256 55 VKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGLA 134 (429)
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCcc
Confidence 456667774 4789999999999999999999988888876 4677888899988888899999999999876443
Q ss_pred cHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCC--ChHHHHHH
Q 015709 250 GQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEKA 327 (402)
Q Consensus 250 ~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~--d~dv~E~a 327 (402)
........--++.|...|++.+ +...+.-++.++..|+. .+..+..|.+.++++.|+.+|+.. +..++=++
T Consensus 135 ~~~~~~l~~~~~~l~~~l~~~~-~~~~~~~~v~~L~~LL~------~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ 207 (429)
T cd00256 135 KMEGSDLDYYFNWLKEQLNNIT-NNDYVQTAARCLQMLLR------VDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQS 207 (429)
T ss_pred ccchhHHHHHHHHHHHHhhccC-CcchHHHHHHHHHHHhC------CchHHHHHHHccCHHHHHHHHhhccccHHHHHHH
Confidence 2221111112235666666542 34567778888988885 467888888888999999999764 56888899
Q ss_pred HHHHHHHhcCCh
Q 015709 328 LAAIKNLLQLRT 339 (402)
Q Consensus 328 L~aL~~L~~~~~ 339 (402)
+.+++-|.-..+
T Consensus 208 ll~lWlLSF~~~ 219 (429)
T cd00256 208 IFCIWLLTFNPH 219 (429)
T ss_pred HHHHHHHhccHH
Confidence 999998877643
No 69
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=96.93 E-value=0.013 Score=60.67 Aligned_cols=119 Identities=15% Similarity=0.081 Sum_probs=93.7
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHH
Q 015709 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF 254 (402)
Q Consensus 175 gl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f 254 (402)
++..|+..|.++++++|..++..||.+-. .+..+.|+.+|+++++.+|..++.+++. ++
T Consensus 87 ~~~~L~~~L~d~~~~vr~aaa~ALg~i~~-----------~~a~~~L~~~L~~~~p~vR~aal~al~~--r~-------- 145 (410)
T TIGR02270 87 DLRSVLAVLQAGPEGLCAGIQAALGWLGG-----------RQAEPWLEPLLAASEPPGRAIGLAALGA--HR-------- 145 (410)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcCCc-----------hHHHHHHHHHhcCCChHHHHHHHHHHHh--hc--------
Confidence 38899999999999999999999997632 2467889999999889999888877765 11
Q ss_pred HhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHH
Q 015709 255 YVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNL 334 (402)
Q Consensus 255 ~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L 334 (402)
..-.+.|..+|+++ ++.++..|+.++..+-. ...++.|...+...|+.++..|+.++..+
T Consensus 146 --~~~~~~L~~~L~d~--d~~Vra~A~raLG~l~~----------------~~a~~~L~~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 146 --HDPGPALEAALTHE--DALVRAAALRALGELPR----------------RLSESTLRLYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred --cChHHHHHHHhcCC--CHHHHHHHHHHHHhhcc----------------ccchHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 12234678888865 77899999999998752 34566677788999999999999888665
No 70
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.79 E-value=0.013 Score=65.58 Aligned_cols=124 Identities=15% Similarity=0.083 Sum_probs=109.7
Q ss_pred CchhHHHhcCCHHHHHHhcCC---CCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCC-HHHHHHHHHHH
Q 015709 165 DNANDLSKLGGLSVLVGQLNH---PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF-VEEAVKALYTV 240 (402)
Q Consensus 165 DnA~~l~~lGgl~~Li~lL~s---~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~-~~vr~kAl~AL 240 (402)
..--+++|-+|-...++.|.. -+++-|..||.||+.++.|-+.-|+..++.+.|..-+..++++. +-.|.-.+-+|
T Consensus 545 SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icL 624 (1387)
T KOG1517|consen 545 SCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICL 624 (1387)
T ss_pred hhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 345689999999999999865 24699999999999999999999999999999999999999864 45688999999
Q ss_pred HHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015709 241 SSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (402)
Q Consensus 241 S~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~ 290 (402)
+-|=.+++.++-.-.+.++.+.|..+|.++ -+.+|.-|+|+|..++..
T Consensus 625 G~LW~d~~~Arw~G~r~~AhekL~~~LsD~--vpEVRaAAVFALgtfl~~ 672 (1387)
T KOG1517|consen 625 GRLWEDYDEARWSGRRDNAHEKLILLLSDP--VPEVRAAAVFALGTFLSN 672 (1387)
T ss_pred HHHhhhcchhhhccccccHHHHHHHHhcCc--cHHHHHHHHHHHHHHhcc
Confidence 999999999888778899999999999986 577999999999999864
No 71
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=96.76 E-value=0.034 Score=60.55 Aligned_cols=143 Identities=14% Similarity=0.166 Sum_probs=98.0
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHH-H-HcCcHHHHHHhhcCCCHHH---HHHHHHHHHHHh---cCChhc
Q 015709 179 LVGQLNHPDTDIRKISAWILGKASQNNPLVQKQV-L-ELGALSKLMKMVKSSFVEE---AVKALYTVSSLI---RNNLAG 250 (402)
Q Consensus 179 Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~-l-e~g~L~~Ll~LL~s~~~~v---r~kAl~ALS~Li---R~~~~~ 250 (402)
++..|+++.+.+|.+|+..++.++.--..|++.- + ..| -.|...|..+.+++ ..+|++||-|.+ .-+||.
T Consensus 804 iL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi 881 (1172)
T KOG0213|consen 804 ILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPI 881 (1172)
T ss_pred HHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCCh
Confidence 3456789999999999999999985333333321 1 122 23556777767776 457777777755 224443
Q ss_pred HHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHH
Q 015709 251 QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAA 330 (402)
Q Consensus 251 ~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~a 330 (402)
.+-++-|..+|++. ..|++.+++-++..+|.. .++....=.=..+|--|+++|++-+..++..|..+
T Consensus 882 ------~dllPrltPILknr--heKVqen~IdLvg~Iadr-----gpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nT 948 (1172)
T KOG0213|consen 882 ------KDLLPRLTPILKNR--HEKVQENCIDLVGTIADR-----GPEYVSAREWMRICFELLELLKAHKKEIRRAAVNT 948 (1172)
T ss_pred ------hhhcccchHhhhhh--HHHHHHHHHHHHHHHHhc-----CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 25678889999986 689999999999999964 33332221113466678888888888899888888
Q ss_pred HHHHhc
Q 015709 331 IKNLLQ 336 (402)
Q Consensus 331 L~~L~~ 336 (402)
+..++.
T Consensus 949 fG~Iak 954 (1172)
T KOG0213|consen 949 FGYIAK 954 (1172)
T ss_pred hhHHHH
Confidence 877764
No 72
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.72 E-value=0.0036 Score=53.85 Aligned_cols=72 Identities=22% Similarity=0.279 Sum_probs=63.8
Q ss_pred CHHHHHHhc-CCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 015709 175 GLSVLVGQL-NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRN 246 (402)
Q Consensus 175 gl~~Li~lL-~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~ 246 (402)
.+..|+.+| .+.++.+.+-||.=||..++..|..+..+-+.|+=..++.|+.+++++||..|+.|+.-++.+
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 116 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVN 116 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 467788999 667899999999999999999999999998999999999999999999999999999987754
No 73
>PF05536 Neurochondrin: Neurochondrin
Probab=96.71 E-value=0.094 Score=56.34 Aligned_cols=155 Identities=15% Similarity=0.109 Sum_probs=120.3
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhH---HHHHHcCcHHHHHHhhcCCC-------HHHHHHHHHHHHHHh
Q 015709 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQ---KQVLELGALSKLMKMVKSSF-------VEEAVKALYTVSSLI 244 (402)
Q Consensus 175 gl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q---~~~le~g~L~~Ll~LL~s~~-------~~vr~kAl~ALS~Li 244 (402)
.+...+.+|++.+.+=|..+.-.+.+++.+++..+ +.+.+.=|.+.|-+||.+.. ...+.-|+.-|++.+
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 35667888988888889999999999999887433 35777777788889998832 345677888888888
Q ss_pred cCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHH
Q 015709 245 RNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQ 324 (402)
Q Consensus 245 R~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~ 324 (402)
+. |.....---.+=+|.|+.++.+.. +..+...+..+|..++. .++-+..+.+.|.++.|++.+.+ ....+
T Consensus 86 ~~-~~~a~~~~~~~~IP~Lle~l~~~s-~~~~v~dalqcL~~Ias------~~~G~~aLl~~g~v~~L~ei~~~-~~~~~ 156 (543)
T PF05536_consen 86 RD-PELASSPQMVSRIPLLLEILSSSS-DLETVDDALQCLLAIAS------SPEGAKALLESGAVPALCEIIPN-QSFQM 156 (543)
T ss_pred CC-hhhhcCHHHHHHHHHHHHHHHcCC-chhHHHHHHHHHHHHHc------CcHhHHHHHhcCCHHHHHHHHHh-CcchH
Confidence 73 332222222478999999998763 34678899999999984 56778899999999999999888 56789
Q ss_pred HHHHHHHHHHhcCC
Q 015709 325 EKALAAIKNLLQLR 338 (402)
Q Consensus 325 E~aL~aL~~L~~~~ 338 (402)
|.++.++.+++...
T Consensus 157 E~Al~lL~~Lls~~ 170 (543)
T PF05536_consen 157 EIALNLLLNLLSRL 170 (543)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988764
No 74
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.70 E-value=0.31 Score=48.63 Aligned_cols=241 Identities=18% Similarity=0.142 Sum_probs=136.9
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHh---cCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcC---Ch
Q 015709 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSK---LGGLSVLVGQLNHPDTDIRKISAWILGKASQN---NP 206 (402)
Q Consensus 133 Mk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~---lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqN---Np 206 (402)
++++|+.+.+.. ...|+.+|..|..++...=. -++.. .-.+..+.+.++.+..+-+..|+.+++-++=. .+
T Consensus 45 L~~~Id~l~eK~--~~~Re~aL~~l~~~l~~~~~-~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~ 121 (309)
T PF05004_consen 45 LKEAIDLLTEKS--SSTREAALEALIRALSSRYL-PDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGE 121 (309)
T ss_pred HHHHHHHHHhcC--HHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCc
Confidence 555666666543 57789999998887754322 23332 23466777888877777788999999888633 23
Q ss_pred HhHHHHHHcCcHHHHHHhhcCCC--HHHHHHHHHHHHHHhc--C-ChhcHHHHHhcCcHH--HHHHhhcCCC--------
Q 015709 207 LVQKQVLELGALSKLMKMVKSSF--VEEAVKALYTVSSLIR--N-NLAGQEMFYVEAGDL--MLQDILGNSS-------- 271 (402)
Q Consensus 207 ~~Q~~~le~g~L~~Ll~LL~s~~--~~vr~kAl~ALS~LiR--~-~~~~~~~f~~~gGi~--~L~~lL~s~~-------- 271 (402)
.. +.+++ ...|.|.+++.+.+ ..+|..+++||+-++- . .+....... ..++ ....+.+++.
T Consensus 122 ~~-~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~--~~le~if~~~~~~~~~~~~~~~~~ 197 (309)
T PF05004_consen 122 DS-EEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELM--ESLESIFLLSILKSDGNAPVVAAE 197 (309)
T ss_pred cH-HHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHH--HHHHHHHHHHhcCcCCCcccccCC
Confidence 33 34444 36788889888765 3556777777775432 2 222222111 1122 1112222221
Q ss_pred ccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCc
Q 015709 272 FEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGL 351 (402)
Q Consensus 272 ~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL 351 (402)
.+..+...|+..-+-|++. .+........ ...++.|+.+|.++|.++|-.|-.+|.-|.....+....+ .
T Consensus 198 ~~~~l~~aAL~aW~lLlt~----~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~~~~~-----~ 267 (309)
T PF05004_consen 198 DDAALVAAALSAWALLLTT----LPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLYELARDHEEDF-----L 267 (309)
T ss_pred CccHHHHHHHHHHHHHHhc----CCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcccccc-----c
Confidence 1345777777777666642 1222122222 3468999999999999999999999988875532111111 2
Q ss_pred HHHHHHHHHHhHHhhhhhhHhhhHHHHHHHHHHHHHHHHHHhh
Q 015709 352 DTALERLRQQLQEVMLEEDQRDYAMDVEALRREVELIFFRKLD 394 (402)
Q Consensus 352 ~~~L~~L~~~~~~l~~~e~~~~y~~~l~~~~~e~~~~~~~~~~ 394 (402)
.+-...|-+.+++|..+- ..|.-.- =|++-...|++-+.
T Consensus 268 ~~~~~~l~~~l~~La~dS--~K~~sKk--drk~qRs~Frdil~ 306 (309)
T PF05004_consen 268 YEDMEELLEQLRELATDS--SKSRSKK--DRKQQRSSFRDILT 306 (309)
T ss_pred ccCHHHHHHHHHHHHHhc--cCccchh--HHHHHHHHHHHHHH
Confidence 223445555556665432 2222111 24555666666543
No 75
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=96.62 E-value=0.021 Score=60.20 Aligned_cols=168 Identities=11% Similarity=0.133 Sum_probs=123.1
Q ss_pred hcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhc-
Q 015709 172 KLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG- 250 (402)
Q Consensus 172 ~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~- 250 (402)
.....++|+++|..|+.-|...+...+.+.+---...|..|++.|.|..|+.++.+.+...+++..|-+--+.-|+...
T Consensus 429 d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~e 508 (743)
T COG5369 429 DYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNE 508 (743)
T ss_pred ccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchh
Confidence 3456788999999888888888888888888766669999999999999999999988899999999999998887554
Q ss_pred HHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhC---C-cHHHHHHhhcCCC-hHHHH
Q 015709 251 QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDR---F-FLKSVVDLTASAD-LDLQE 325 (402)
Q Consensus 251 ~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~---g-~v~~Lv~lL~~~d-~dv~E 325 (402)
+-+|+.-.|+..++....++ ..++|.....++.|+.-.. ..++...+.+.+. . +.+.+++-+...+ .++++
T Consensus 509 kf~~Lakig~~kvl~~~NDp--c~~vq~q~lQilrNftc~~--~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~ 584 (743)
T COG5369 509 KFKFLAKIGVEKVLSYTNDP--CFKVQHQVLQILRNFTCDT--SKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILE 584 (743)
T ss_pred hhhhHHhcCHHHHHHHhcCc--ccccHHHHHHHHHhccccc--ccccccceeEEecChHHHHHHHHHHHHHhcCchhhhh
Confidence 44678889999999999987 6889999999999986521 1123333333322 1 4455666666654 45566
Q ss_pred HHHHHHHHHhcCChhhHHH
Q 015709 326 KALAAIKNLLQLRTTEALV 344 (402)
Q Consensus 326 ~aL~aL~~L~~~~~~~~~~ 344 (402)
..-..+...+++. +.++.
T Consensus 585 ~~yilv~~aa~d~-~l~~~ 602 (743)
T COG5369 585 GCYILVRNAACDD-TLDYI 602 (743)
T ss_pred hHHHHHHHHhccc-hHHHH
Confidence 6544444444443 34443
No 76
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.54 E-value=0.056 Score=59.63 Aligned_cols=139 Identities=17% Similarity=0.225 Sum_probs=85.4
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHH
Q 015709 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFY 255 (402)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~ 255 (402)
++-+++...+.+.+++..----+-..++.+| +..++ +++.+.+=++++++.+|..|+..+|.+ |.. . +.
T Consensus 57 f~dViK~~~trd~ElKrL~ylYl~~yak~~P--~~~lL---avNti~kDl~d~N~~iR~~AlR~ls~l-~~~-e----l~ 125 (757)
T COG5096 57 FPDVIKNVATRDVELKRLLYLYLERYAKLKP--ELALL---AVNTIQKDLQDPNEEIRGFALRTLSLL-RVK-E----LL 125 (757)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhccCH--HHHHH---HHHHHHhhccCCCHHHHHHHHHHHHhc-ChH-H----HH
Confidence 4555665556667777766666667777777 33333 356666666676777777777777754 321 1 11
Q ss_pred hcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHh
Q 015709 256 VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL 335 (402)
Q Consensus 256 ~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~ 335 (402)
-..+.++.+++.++ +..+|+.|+.++..+-. .+ ...+.+.|.+..+..++...|+.|...|+.+|..+-
T Consensus 126 -~~~~~~ik~~l~d~--~ayVRk~Aalav~kly~-----ld---~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~ 194 (757)
T COG5096 126 -GNIIDPIKKLLTDP--HAYVRKTAALAVAKLYR-----LD---KDLYHELGLIDILKELVADSDPIVIANALASLAEID 194 (757)
T ss_pred -HHHHHHHHHHccCC--cHHHHHHHHHHHHHHHh-----cC---HhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhc
Confidence 12456677777765 45677777777777652 12 224445667777777777777777777776666654
Q ss_pred c
Q 015709 336 Q 336 (402)
Q Consensus 336 ~ 336 (402)
.
T Consensus 195 ~ 195 (757)
T COG5096 195 P 195 (757)
T ss_pred h
Confidence 3
No 77
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.52 E-value=0.051 Score=49.12 Aligned_cols=122 Identities=16% Similarity=0.126 Sum_probs=97.5
Q ss_pred chhHHHhcCCHHHHHHhcCCCC------HHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCC--HHHHHHHH
Q 015709 166 NANDLSKLGGLSVLVGQLNHPD------TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF--VEEAVKAL 237 (402)
Q Consensus 166 nA~~l~~lGgl~~Li~lL~s~~------~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~--~~vr~kAl 237 (402)
.|..|++.||+..|++.+.++. .++..++..+.-.+....--+.+ .++...+.+++..++... ..+...|+
T Consensus 3 FA~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd-~l~~~FI~Kia~~Vn~~~~d~~i~q~sL 81 (160)
T PF11841_consen 3 FAQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWD-TLSDSFIKKIASYVNSSAMDASILQRSL 81 (160)
T ss_pred hHHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchh-hccHHHHHHHHHHHccccccchHHHHHH
Confidence 5889999999999999996644 47778888888777765433443 455567889999998655 56778889
Q ss_pred HHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015709 238 YTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (402)
Q Consensus 238 ~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~ 290 (402)
.-|=+++-+++...+.+.+.=-++-|+..|+.+ +..+|.+|+.++..|...
T Consensus 82 aILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~--~~~iq~naiaLinAL~~k 132 (160)
T PF11841_consen 82 AILESIVLNSPKLYQLVEQEVTLESLIRHLQVS--NQEIQTNAIALINALFLK 132 (160)
T ss_pred HHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcC--CHHHHHHHHHHHHHHHhc
Confidence 889999998887788777777888999999985 677999999999999853
No 78
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=96.51 E-value=0.32 Score=50.46 Aligned_cols=159 Identities=18% Similarity=0.069 Sum_probs=99.1
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHH
Q 015709 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK 210 (402)
Q Consensus 131 ~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~ 210 (402)
.....++..|.+. ++..+..++..+.. +...-.++++.+|+++++.+|..|+.+||.+-.
T Consensus 117 ~a~~~L~~~L~~~--~p~vR~aal~al~~-----------r~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~------- 176 (410)
T TIGR02270 117 QAEPWLEPLLAAS--EPPGRAIGLAALGA-----------HRHDPGPALEAALTHEDALVRAAALRALGELPR------- 176 (410)
T ss_pred HHHHHHHHHhcCC--ChHHHHHHHHHHHh-----------hccChHHHHHHHhcCCCHHHHHHHHHHHHhhcc-------
Confidence 3444455555443 34555556655544 222346789999999999999999999999874
Q ss_pred HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHH---h-cC------------------cHHHHHHhhc
Q 015709 211 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFY---V-EA------------------GDLMLQDILG 268 (402)
Q Consensus 211 ~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~---~-~g------------------Gi~~L~~lL~ 268 (402)
..+++.|...+.+.++.||..|+++++-+ +.+.+..... . .| .++.|..+++
T Consensus 177 ----~~a~~~L~~al~d~~~~VR~aA~~al~~l--G~~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~ll~ 250 (410)
T TIGR02270 177 ----RLSESTLRLYLRDSDPEVRFAALEAGLLA--GSRLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQAWLRELLQ 250 (410)
T ss_pred ----ccchHHHHHHHcCCCHHHHHHHHHHHHHc--CCHhHHHHHHHHHhccCccHHHHHHHHHHhCCchhHHHHHHHHhc
Confidence 24678888999999999999999999765 2233222211 1 11 1233333344
Q ss_pred CCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcC
Q 015709 269 NSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 337 (402)
Q Consensus 269 s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~ 337 (402)
++ .+++-+++++..+- +...++.|+..+..+ .+...|..++..++..
T Consensus 251 d~----~vr~~a~~AlG~lg----------------~p~av~~L~~~l~d~--~~aR~A~eA~~~ItG~ 297 (410)
T TIGR02270 251 AA----ATRREALRAVGLVG----------------DVEAAPWCLEAMREP--PWARLAGEAFSLITGM 297 (410)
T ss_pred Ch----hhHHHHHHHHHHcC----------------CcchHHHHHHHhcCc--HHHHHHHHHHHHhhCC
Confidence 32 14555555555442 234666667766543 4888888888877764
No 79
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.50 E-value=0.0049 Score=44.97 Aligned_cols=55 Identities=15% Similarity=0.094 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q 015709 230 VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDL 287 (402)
Q Consensus 230 ~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L 287 (402)
+.+|..|+++|+++..+.+...+. +....++.|..+|+++ +..+|..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~--~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDD--DDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSS--SHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCC--CHHHHHHHHHHHhcC
Confidence 368999999999988877765555 4568899999999876 457999999999865
No 80
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.042 Score=54.98 Aligned_cols=154 Identities=11% Similarity=0.077 Sum_probs=116.4
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh--HhHHH--HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcH
Q 015709 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNP--LVQKQ--VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQ 251 (402)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp--~~Q~~--~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~ 251 (402)
.|.|-.-|.+++..++..||.-||.+..|.. .+.+. ++..|.++.++..+-.++.++...|+-.|+++.+ +|.+.
T Consensus 84 mpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrial-fpaal 162 (524)
T KOG4413|consen 84 MPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIAL-FPAAL 162 (524)
T ss_pred hHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHh-cHHHH
Confidence 4555567889999999999999999999876 33333 4578999999999999999999999999999987 78888
Q ss_pred HHHHhcCcHHHH--HHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcC-CChHHHHHHH
Q 015709 252 EMFYVEAGDLML--QDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS-ADLDLQEKAL 328 (402)
Q Consensus 252 ~~f~~~gGi~~L--~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~-~d~dv~E~aL 328 (402)
+.++..+-...+ +.+-... +.-.|.+...+|-.+.. ..+.........|++..|..-|+. .|.-++-.++
T Consensus 163 eaiFeSellDdlhlrnlaakc--ndiaRvRVleLIieifS-----iSpesaneckkSGLldlLeaElkGteDtLVianci 235 (524)
T KOG4413|consen 163 EAIFESELLDDLHLRNLAAKC--NDIARVRVLELIIEIFS-----ISPESANECKKSGLLDLLEAELKGTEDTLVIANCI 235 (524)
T ss_pred HHhcccccCChHHHhHHHhhh--hhHHHHHHHHHHHHHHh-----cCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHH
Confidence 888776544433 3332222 23478888888887763 355566666778888888776665 5777888888
Q ss_pred HHHHHHhcC
Q 015709 329 AAIKNLLQL 337 (402)
Q Consensus 329 ~aL~~L~~~ 337 (402)
..+..|+..
T Consensus 236 ElvteLaet 244 (524)
T KOG4413|consen 236 ELVTELAET 244 (524)
T ss_pred HHHHHHHHH
Confidence 888888764
No 81
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=96.47 E-value=0.046 Score=48.39 Aligned_cols=108 Identities=14% Similarity=0.060 Sum_probs=88.6
Q ss_pred CHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhh
Q 015709 146 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV 225 (402)
Q Consensus 146 t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL 225 (402)
+.|.|+....+|.++.-+.-|=.-+..+..+..++..|..++..+...+.-.|.++|- .+...+.|++.+++|.++..+
T Consensus 30 ~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~-d~~n~~~I~ea~g~plii~~l 108 (173)
T KOG4646|consen 30 NIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL-DKTNAKFIREALGLPLIIFVL 108 (173)
T ss_pred cHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc-ChHHHHHHHHhcCCceEEeec
Confidence 4678888888999988777787889999999999999999999999999999999996 578899999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHhcCChhcHHHH
Q 015709 226 KSSFVEEAVKALYTVSSLIRNNLAGQEMF 254 (402)
Q Consensus 226 ~s~~~~vr~kAl~ALS~LiR~~~~~~~~f 254 (402)
+|....+.-.|+.++--|.-+...-...+
T Consensus 109 ssp~e~tv~sa~~~l~~l~~~~Rt~r~el 137 (173)
T KOG4646|consen 109 SSPPEITVHSAALFLQLLEFGERTERDEL 137 (173)
T ss_pred CCChHHHHHHHHHHHHHhcCcccchhHHh
Confidence 98777666667666666654443333333
No 82
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.43 E-value=0.21 Score=54.71 Aligned_cols=176 Identities=15% Similarity=0.159 Sum_probs=119.2
Q ss_pred HhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhc-HHHHHhcCc
Q 015709 181 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG-QEMFYVEAG 259 (402)
Q Consensus 181 ~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~-~~~f~~~gG 259 (402)
.-+++|+=.-|..|+-+.|.+-..-...+-.-+..+++|.++.+..+++--++..+.|+++.++.+.+.. .....-..-
T Consensus 371 e~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~ 450 (859)
T KOG1241|consen 371 ENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSK 450 (859)
T ss_pred HhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHH
Confidence 3556788888899999999999876667777777899999999999666677889999999999887643 233334566
Q ss_pred HHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCC-----CcchhHHhCCcHHHHHHhhcC---CChHHHHHHHHHH
Q 015709 260 DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHK-----VEPPLFRDRFFLKSVVDLTAS---ADLDLQEKALAAI 331 (402)
Q Consensus 260 i~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~-----~~~~~l~~~g~v~~Lv~lL~~---~d~dv~E~aL~aL 331 (402)
++.+..-|.+ .+++-.+++|++.+|+....+.... ..-+.+ ..++..|++.-.. .+..+|..+-.||
T Consensus 451 l~~l~~gL~D---ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y--~~ii~~Ll~~tdr~dgnqsNLR~AAYeAL 525 (859)
T KOG1241|consen 451 LSALLEGLND---EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFY--EAIIGSLLKVTDRADGNQSNLRSAAYEAL 525 (859)
T ss_pred HHHHHHHhhh---CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhH--HHHHHHHHhhccccccchhhHHHHHHHHH
Confidence 6777777775 5889999999999998543111110 001111 1234444444333 2578999999999
Q ss_pred HHHhcCChh-hHHHHHhcCCcHHHHHHHHHHhH
Q 015709 332 KNLLQLRTT-EALVLKDFCGLDTALERLRQQLQ 363 (402)
Q Consensus 332 ~~L~~~~~~-~~~~~~~~~GL~~~L~~L~~~~~ 363 (402)
..+...+++ +..++. .-..-.+++|.+-++
T Consensus 526 mElIk~st~~vy~~v~--~~~l~il~kl~q~i~ 556 (859)
T KOG1241|consen 526 MELIKNSTDDVYPMVQ--KLTLVILEKLDQTIS 556 (859)
T ss_pred HHHHHcCcHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 999988654 333332 123344566655555
No 83
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=96.39 E-value=0.11 Score=54.38 Aligned_cols=134 Identities=20% Similarity=0.244 Sum_probs=95.9
Q ss_pred HHHHHHHccCCCCchhHHHhcCCHHHHHHhc----------CCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHH
Q 015709 153 ALQELLILVEPIDNANDLSKLGGLSVLVGQL----------NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLM 222 (402)
Q Consensus 153 AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL----------~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll 222 (402)
+|+.|.-+-.+..++..+..-.|+..|+.+- ..+++.+...|.+||+|+.-++|..|+.+.+.|+.+.++
T Consensus 1 ~L~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~ 80 (446)
T PF10165_consen 1 CLETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC 80 (446)
T ss_pred CHHHHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence 3566666777777777777777777777654 347899999999999999999999999999999999999
Q ss_pred HhhcCC-----CHHH---HHHHHHHHHHHhcCChhcHHH-HHhcCcHHHHHHhhcC--------CC-------ccHHHHH
Q 015709 223 KMVKSS-----FVEE---AVKALYTVSSLIRNNLAGQEM-FYVEAGDLMLQDILGN--------SS-------FEIRLHR 278 (402)
Q Consensus 223 ~LL~s~-----~~~v---r~kAl~ALS~LiR~~~~~~~~-f~~~gGi~~L~~lL~s--------~~-------~d~klq~ 278 (402)
..|+.. +.++ -.+-++-++++. +..+.. +-+++|+..|...|.. .. .+...-.
T Consensus 81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~---~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~ 157 (446)
T PF10165_consen 81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALR---PDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALS 157 (446)
T ss_pred HHHHcccccCCChhHHHHHHHHHHHHhcCC---hhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHH
Confidence 999976 3333 345555555443 333434 4457899888887642 00 1344456
Q ss_pred HHHHHHHHHhh
Q 015709 279 KAVSLVGDLAK 289 (402)
Q Consensus 279 kA~~lL~~L~~ 289 (402)
.++.++.|+..
T Consensus 158 EiLKllFNit~ 168 (446)
T PF10165_consen 158 EILKLLFNITL 168 (446)
T ss_pred HHHHHHHHhhh
Confidence 67777777764
No 84
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.29 E-value=0.053 Score=58.04 Aligned_cols=146 Identities=18% Similarity=0.149 Sum_probs=95.3
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHH----HHHHhhcCCCHHH---HHHHHHHHHHHhcCChh
Q 015709 177 SVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALS----KLMKMVKSSFVEE---AVKALYTVSSLIRNNLA 249 (402)
Q Consensus 177 ~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~----~Ll~LL~s~~~~v---r~kAl~ALS~LiR~~~~ 249 (402)
..++.+|+++.|.+|.+|+...|.++.- -.+.-+..-+. .|...|..+.+++ ..+|+++|-+..+-. .
T Consensus 607 StiL~~L~~k~p~vR~~aadl~~sl~~v----lk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~-~ 681 (975)
T COG5181 607 STILKLLRSKPPDVRIRAADLMGSLAKV----LKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFR-S 681 (975)
T ss_pred HHHHHHhcCCCccHHHHHHHHHHHHHHH----HHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhccc-c
Confidence 3456788999999999999999998741 11111111222 2445555556766 457777776665432 1
Q ss_pred cHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHH
Q 015709 250 GQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALA 329 (402)
Q Consensus 250 ~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~ 329 (402)
-|-- -.|.++.|..+|++. ..|++.+++.++.-+|.. .|+....=.=..++--|+++|.+-+..++..|..
T Consensus 682 mqpP--i~~ilP~ltPILrnk--h~Kv~~nti~lvg~I~~~-----~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~ 752 (975)
T COG5181 682 MQPP--ISGILPSLTPILRNK--HQKVVANTIALVGTICMN-----SPEYIGVREWMRICFELVDSLKSWNKEIRRNATE 752 (975)
T ss_pred cCCc--hhhccccccHhhhhh--hHHHhhhHHHHHHHHHhc-----CcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhh
Confidence 1111 136778899999986 688999999999999964 3332221111346667888888888888888887
Q ss_pred HHHHHhc
Q 015709 330 AIKNLLQ 336 (402)
Q Consensus 330 aL~~L~~ 336 (402)
++..++.
T Consensus 753 tfG~Is~ 759 (975)
T COG5181 753 TFGCISR 759 (975)
T ss_pred hhhhHHh
Confidence 7776653
No 85
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.26 E-value=0.15 Score=56.11 Aligned_cols=200 Identities=21% Similarity=0.237 Sum_probs=122.9
Q ss_pred HhHHHHHHHH--HHcCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHH
Q 015709 112 KRQMEIKELM--EKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTD 189 (402)
Q Consensus 112 ~r~~~L~ea~--~~l~~~~d~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~ 189 (402)
+|++-+.+.| .-+|-|+..-.| ++++.+.++... |-|+.=|-...-|=|..| ++-+ ..-.|.+-|+|++--
T Consensus 50 ~r~rniaKLlYi~MLGypahFGqi-eclKLias~~f~-dKRiGYLaamLlLdE~qd----vllL-ltNslknDL~s~nq~ 122 (866)
T KOG1062|consen 50 KRHRNIAKLLYIHMLGYPAHFGQI-ECLKLIASDNFL-DKRIGYLAAMLLLDERQD----LLLL-LTNSLKNDLNSSNQY 122 (866)
T ss_pred HHHHHHHHHHHHHHhCCCccchhh-HHHHHhcCCCch-HHHHHHHHHHHHhccchH----HHHH-HHHHHHhhccCCCee
Confidence 4555554442 333555555554 466666666554 666666665555444443 2211 112344567889999
Q ss_pred HHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcC
Q 015709 190 IRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGN 269 (402)
Q Consensus 190 Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s 269 (402)
+...|.-+||+++ +|+.-. ...|.+-+++++.++-+|+||+.|.--++|.-|...+.|+. .-..+|.+
T Consensus 123 vVglAL~alg~i~--s~Emar-----dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~~-----~~~~lL~e 190 (866)
T KOG1062|consen 123 VVGLALCALGNIC--SPEMAR-----DLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHFVI-----AFRKLLCE 190 (866)
T ss_pred ehHHHHHHhhccC--CHHHhH-----HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHhhH-----HHHHHHhh
Confidence 9999999999998 354333 35688889999989999999999999999999888777752 22334444
Q ss_pred CCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhc---------------CCChHHHHHHHHHHHHH
Q 015709 270 SSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA---------------SADLDLQEKALAAIKNL 334 (402)
Q Consensus 270 ~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~---------------~~d~dv~E~aL~aL~~L 334 (402)
. +..+-.-++.++..||. .+++....+.+ +++.+|..|+ -+||-+|-+.|+.|.-|
T Consensus 191 k--~hGVL~~~l~l~~e~c~-----~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriL 261 (866)
T KOG1062|consen 191 K--HHGVLIAGLHLITELCK-----ISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRIL 261 (866)
T ss_pred c--CCceeeeHHHHHHHHHh-----cCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHh
Confidence 3 23445556666666664 23444444444 4444444432 13566666777666666
Q ss_pred hcCCh
Q 015709 335 LQLRT 339 (402)
Q Consensus 335 ~~~~~ 339 (402)
-+...
T Consensus 262 Gq~d~ 266 (866)
T KOG1062|consen 262 GQNDA 266 (866)
T ss_pred cCCCc
Confidence 65543
No 86
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=96.17 E-value=0.091 Score=54.76 Aligned_cols=154 Identities=13% Similarity=0.122 Sum_probs=117.6
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcC-CCCHHHHHHHHHHHHHHhcCChHhHHH
Q 015709 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLN-HPDTDIRKISAWILGKASQNNPLVQKQ 211 (402)
Q Consensus 133 Mk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~-s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~ 211 (402)
...++..+..+......++.+-..|+++.- -+|..-+...| +..++.+-+ ...+++....+.+|+++-....+.-+.
T Consensus 182 lD~Llrmf~aPn~et~vRve~~rlLEq~~~-aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~~ 259 (832)
T KOG3678|consen 182 LDLLLRMFQAPNLETSVRVEAARLLEQILV-AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEETCQR 259 (832)
T ss_pred HHHHHHHHhCCchhHHHHHHHHHHHHHHHh-hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 445566677776555568888777777553 34555666665 666666553 467889999999999999987777777
Q ss_pred HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcC-ChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015709 212 VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRN-NLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (402)
Q Consensus 212 ~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~-~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~ 290 (402)
+++.|++..++-.....++.+-..+..||+|+.-| ....+..+++-..-+-|..+-.+. |.-+|..|+-++.-|++.
T Consensus 260 Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~sk--Del~R~~AClAV~vlat~ 337 (832)
T KOG3678|consen 260 LVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSK--DELLRLHACLAVAVLATN 337 (832)
T ss_pred HHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcch--HHHHHHHHHHHHhhhhhh
Confidence 88999999999888888888888888899986655 566777888888888887776664 566899999999998865
No 87
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=96.15 E-value=0.029 Score=50.88 Aligned_cols=112 Identities=15% Similarity=0.109 Sum_probs=80.1
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh-cHHHHHhcCcHHHHHHhhcCC-------CccHHHHHHHHHHHHHHh
Q 015709 217 ALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA-GQEMFYVEAGDLMLQDILGNS-------SFEIRLHRKAVSLVGDLA 288 (402)
Q Consensus 217 ~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~-~~~~f~~~gGi~~L~~lL~s~-------~~d~klq~kA~~lL~~L~ 288 (402)
....+++.+.+.+... +.+..|.-.+|.++. -.+.|++.||+..|..+|..- ..+..+...++.++..|+
T Consensus 67 ~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~ 144 (187)
T PF06371_consen 67 SPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM 144 (187)
T ss_dssp HHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence 3455666676544322 788888888888654 488999999999999998631 134567888999999988
Q ss_pred hcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHh
Q 015709 289 KCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL 335 (402)
Q Consensus 289 ~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~ 335 (402)
.+ .......+...+++..++..|.++++.++..|+..|..++
T Consensus 145 n~-----~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 145 NT-----KYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp SS-----HHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred cc-----HHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 42 2333445556899999999999999999999999888764
No 88
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=96.14 E-value=0.53 Score=48.28 Aligned_cols=178 Identities=15% Similarity=0.070 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCC--CCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHh
Q 015709 147 LEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH--PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 224 (402)
Q Consensus 147 ~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s--~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~L 224 (402)
.+.+..++..+.+++.+.+.-..+.+++.--.++..|.. .+..=|.+|...+..+..-....+ -+-.|.+..++.+
T Consensus 39 ~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~--~~~~~vvralvai 116 (371)
T PF14664_consen 39 KEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPK--EIPRGVVRALVAI 116 (371)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcc--cCCHHHHHHHHHH
Confidence 588899999999999999999999999877777777743 456678999999998886421111 1345788999999
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHH
Q 015709 225 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR 304 (402)
Q Consensus 225 L~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~ 304 (402)
..+.++..+.-|+-.|.-++-.+|. .+..+||+..|.+.+.++ ...+..-.+..+-++.. .|..+..+.
T Consensus 117 ae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~--~~~~~~~l~~~lL~lLd------~p~tR~yl~ 185 (371)
T PF14664_consen 117 AEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDG--SFSISESLLDTLLYLLD------SPRTRKYLR 185 (371)
T ss_pred HhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhc--cHhHHHHHHHHHHHHhC------Ccchhhhhc
Confidence 9998889999999999999888885 778999999999999875 23366677777778773 567777666
Q ss_pred hCCcHHHHHHhhcCC-------Ch--HHHHHHHHHHHHHhcC
Q 015709 305 DRFFLKSVVDLTASA-------DL--DLQEKALAAIKNLLQL 337 (402)
Q Consensus 305 ~~g~v~~Lv~lL~~~-------d~--dv~E~aL~aL~~L~~~ 337 (402)
..--+..+....... +. +....+..++..++..
T Consensus 186 ~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~Lrs 227 (371)
T PF14664_consen 186 PGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRS 227 (371)
T ss_pred CCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhc
Confidence 544455554443222 22 3455666666666543
No 89
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.13 E-value=0.89 Score=51.21 Aligned_cols=119 Identities=15% Similarity=0.168 Sum_probs=78.5
Q ss_pred HHHHHHHhh------cCCCCHHHHHHHHHHHHHccCCC----CchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 015709 133 IQIAIDDLN------NSTLSLEDSQRALQELLILVEPI----DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKAS 202 (402)
Q Consensus 133 Mk~al~~L~------~~~~t~e~k~~AL~~L~~Lve~i----DnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~a 202 (402)
|.=++++|. .+..++-.|..||..+..+++-+ -.++.|..+ ..+.+...++++..-+|++|||+++..+
T Consensus 412 l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~f-lv~hVfP~f~s~~g~Lrarac~vl~~~~ 490 (1010)
T KOG1991|consen 412 LSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYF-LVNHVFPEFQSPYGYLRARACWVLSQFS 490 (1010)
T ss_pred HHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHH-HHHHhhHhhcCchhHHHHHHHHHHHHHH
Confidence 444556665 22234456777777766655422 233444443 4566677888999999999999999999
Q ss_pred cCChHhHHHHHHcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhcHHHH
Q 015709 203 QNNPLVQKQVLELGALSKLMKMVK-SSFVEEAVKALYTVSSLIRNNLAGQEMF 254 (402)
Q Consensus 203 qNNp~~Q~~~le~g~L~~Ll~LL~-s~~~~vr~kAl~ALS~LiR~~~~~~~~f 254 (402)
.-+=+.+..+. .++......+. +.+.+|++.|..||.+++.+++.+-..+
T Consensus 491 ~~df~d~~~l~--~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~ 541 (1010)
T KOG1991|consen 491 SIDFKDPNNLS--EALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKV 541 (1010)
T ss_pred hccCCChHHHH--HHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhH
Confidence 43222233332 35666777777 4446899999999999999987664444
No 90
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.05 E-value=0.41 Score=50.30 Aligned_cols=196 Identities=15% Similarity=0.157 Sum_probs=144.5
Q ss_pred HHccCCCCchhHHHhcCCHHHHHH-hcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCH-HHHHH
Q 015709 158 LILVEPIDNANDLSKLGGLSVLVG-QLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFV-EEAVK 235 (402)
Q Consensus 158 ~~Lve~iDnA~~l~~lGgl~~Li~-lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~-~vr~k 235 (402)
.+++-+-.||.-++.-.|+..|+. -+++.++-+ ..++.+++|.....|..|+++ +..|..+++.++. +.-..
T Consensus 451 iNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lL----mK~vRniSqHeg~tqn~Fidy--vgdLa~i~~nd~~E~F~~E 524 (791)
T KOG1222|consen 451 INLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLL----MKVVRNISQHEGATQNMFIDY--VGDLAGIAKNDNSESFGLE 524 (791)
T ss_pred HHHHhccccceEEecCcchHHHHHHHhcccchHH----HHHHHHhhhccchHHHHHHHH--HHHHHHHhhcCchHHHHHH
Confidence 456677889999999889999986 567777654 578999999988899999975 7788888887664 45788
Q ss_pred HHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHh
Q 015709 236 ALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDL 315 (402)
Q Consensus 236 Al~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~l 315 (402)
++..++++.-..-+-.+-+...+-+|-+...|+.+.....++...+-++..++. +......+...|+++.++++
T Consensus 525 ClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~------d~~cA~Lla~a~~i~tlieL 598 (791)
T KOG1222|consen 525 CLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMAR------DLDCARLLAPAKLIDTLIEL 598 (791)
T ss_pred HHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhh------hhHHHHHhCccccHHHHHHH
Confidence 999999987655554555557899999999998664444577777777776653 34455566788999999999
Q ss_pred hcCC--ChHHHHHHHHHHHHHhcCChhhHHHHHhcCCcHH-HHHHHHHHhHHhh
Q 015709 316 TASA--DLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDT-ALERLRQQLQEVM 366 (402)
Q Consensus 316 L~~~--d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~~-~L~~L~~~~~~l~ 366 (402)
|+.. |.++..+.+-...+++.+. ..|+.+-++..+.. .+..++..+.+.-
T Consensus 599 L~a~QeDDEfV~QiiyVF~Q~l~He-~tr~~miket~~~AylIDLMHDkN~eiR 651 (791)
T KOG1222|consen 599 LQACQEDDEFVVQIIYVFLQFLKHE-LTRRLMIKETALGAYLIDLMHDKNAEIR 651 (791)
T ss_pred HHhhcccchHHHHHHHHHHHHHHHH-HHHHHHHhhccchHHHHHHHhcccHHHH
Confidence 9864 7778888888888888873 45665554655543 4455555555543
No 91
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.05 E-value=0.055 Score=56.50 Aligned_cols=122 Identities=17% Similarity=0.142 Sum_probs=96.5
Q ss_pred CCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCC-HHHHHHHHHHHH
Q 015709 163 PIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVS 241 (402)
Q Consensus 163 ~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~-~~vr~kAl~ALS 241 (402)
-.+|.+++..+|-++.|+.+....+++++......+-+++-. ...+..++..|.+|.|..++.+++ ..+..+.+|-+|
T Consensus 334 f~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD-~glr~KMv~~GllP~l~~ll~~d~~~~iA~~~lYh~S 412 (791)
T KOG1222|consen 334 FDENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFD-SGLRPKMVNGGLLPHLASLLDSDTKHGIALNMLYHLS 412 (791)
T ss_pred hccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhcccc-ccccHHHhhccchHHHHHHhCCcccchhhhhhhhhhc
Confidence 357999999999999999999999999999999999999864 457888999999999999999887 467888999988
Q ss_pred HHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015709 242 SLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (402)
Q Consensus 242 ~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~ 290 (402)
+ +......|.-...++.+...+-+. .+.++-..-..+.-|||.+
T Consensus 413 ~----dD~~K~MfayTdci~~lmk~v~~~-~~~~vdl~lia~ciNl~ln 456 (791)
T KOG1222|consen 413 C----DDDAKAMFAYTDCIKLLMKDVLSG-TGSEVDLALIALCINLCLN 456 (791)
T ss_pred c----CcHHHHHHHHHHHHHHHHHHHHhc-CCceecHHHHHHHHHHHhc
Confidence 6 344556777777888887766544 2445555555555677754
No 92
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=95.98 E-value=0.061 Score=57.55 Aligned_cols=84 Identities=13% Similarity=0.191 Sum_probs=62.7
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHH
Q 015709 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFY 255 (402)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~ 255 (402)
...++..-+ .++..+..|+..|....+.-|..++. +|..+++|..+++..+|..|+-.|..+|++++.....+
T Consensus 25 y~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv- 97 (556)
T PF05918_consen 25 YKEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV- 97 (556)
T ss_dssp HHHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH-
T ss_pred HHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH-
Confidence 444555544 46889999999999999999999987 46789999999999999999999999999988766654
Q ss_pred hcCcHHHHHHhhcCC
Q 015709 256 VEAGDLMLQDILGNS 270 (402)
Q Consensus 256 ~~gGi~~L~~lL~s~ 270 (402)
..+|+++|+++
T Consensus 98 ----aDvL~QlL~td 108 (556)
T PF05918_consen 98 ----ADVLVQLLQTD 108 (556)
T ss_dssp ----HHHHHHHTT--
T ss_pred ----HHHHHHHHhcc
Confidence 57899999976
No 93
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=95.94 E-value=0.14 Score=46.35 Aligned_cols=126 Identities=13% Similarity=0.201 Sum_probs=91.5
Q ss_pred HHHHHHcCcHHHHHHhhcCCCH------HHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHH
Q 015709 209 QKQVLELGALSKLMKMVKSSFV------EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVS 282 (402)
Q Consensus 209 Q~~~le~g~L~~Ll~LL~s~~~------~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~ 282 (402)
...|++.||+..|++++.++.. +.-..++.|...+.-|.--..+ .....=+..++........+..+...|+.
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd-~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa 82 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWD-TLSDSFIKKIASYVNSSAMDASILQRSLA 82 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchh-hccHHHHHHHHHHHccccccchHHHHHHH
Confidence 3568899999999999998763 3455667777776665332222 22233344555666655457789999999
Q ss_pred HHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChh
Q 015709 283 LVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTT 340 (402)
Q Consensus 283 lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~ 340 (402)
.+.+++.+ .+.....+.++=-++.|+.+|...+.++|..++..+-+|...+++
T Consensus 83 ILEs~Vl~-----S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~ 135 (160)
T PF11841_consen 83 ILESIVLN-----SPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADD 135 (160)
T ss_pred HHHHHHhC-----CHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCh
Confidence 99999853 445566677777889999999999999999999999988877544
No 94
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.92 E-value=0.012 Score=38.25 Aligned_cols=29 Identities=31% Similarity=0.573 Sum_probs=25.9
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcC
Q 015709 176 LSVLVGQLNHPDTDIRKISAWILGKASQN 204 (402)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~vLg~~aqN 204 (402)
+|.+++++++++++||..|+++||.+++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 68899999999999999999999999864
No 95
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=95.90 E-value=0.6 Score=52.46 Aligned_cols=217 Identities=15% Similarity=0.146 Sum_probs=117.7
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHhhcCCCCH-----------------HHHHHHHHHHHH-ccCCCCchhHHHhcCC
Q 015709 114 QMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSL-----------------EDSQRALQELLI-LVEPIDNANDLSKLGG 175 (402)
Q Consensus 114 ~~~L~ea~~~l~~~~d~~lMk~al~~L~~~~~t~-----------------e~k~~AL~~L~~-Lve~iDnA~~l~~lGg 175 (402)
|.+|++..-.+...+..+.++-.++.|.+..-+. +..+...++|.. ++..-+.-+++..+|.
T Consensus 30 m~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s~keq~rdissi~L 109 (1233)
T KOG1824|consen 30 MTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLSGKEQLRDISSIGL 109 (1233)
T ss_pred HHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhccchhhhccHHHHHH
Confidence 4455554433444556777777777776653211 111222333332 2444556677777654
Q ss_pred HHHHHHhcCC-------------------------CCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCH
Q 015709 176 LSVLVGQLNH-------------------------PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFV 230 (402)
Q Consensus 176 l~~Li~lL~s-------------------------~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~ 230 (402)
...+.++=-+ +...|+.-++.+++-..++--..--. ...+.+..++.-+.+.-.
T Consensus 110 ktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~-fh~~il~~l~~ql~s~R~ 188 (1233)
T KOG1824|consen 110 KTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPN-FHLSILKCLLPQLQSPRL 188 (1233)
T ss_pred HHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcc-hHHHHHHHHhhcccChHH
Confidence 3333322211 12235555555555555442111111 122344445555555556
Q ss_pred HHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHH
Q 015709 231 EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLK 310 (402)
Q Consensus 231 ~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~ 310 (402)
.+|+||+++||.+.-..+. ..| .+.++.|..-|..+ +....-+--..+|..++.+. ...... .-...++
T Consensus 189 aVrKkai~~l~~la~~~~~--~ly--~~li~~Ll~~L~~~-~q~~~~rt~Iq~l~~i~r~a----g~r~~~--h~~~ivp 257 (1233)
T KOG1824|consen 189 AVRKKAITALGHLASSCNR--DLY--VELIEHLLKGLSNR-TQMSATRTYIQCLAAICRQA----GHRFGS--HLDKIVP 257 (1233)
T ss_pred HHHHHHHHHHHHHHHhcCH--HHH--HHHHHHHHhccCCC-CchHHHHHHHHHHHHHHHHh----cchhhc--ccchhhH
Confidence 7899999999998765432 222 24455566656544 23333444566777777642 111111 1235677
Q ss_pred HHHHhh---cCCChHHHHHHHHHHHHHhcCChhhHHHH
Q 015709 311 SVVDLT---ASADLDLQEKALAAIKNLLQLRTTEALVL 345 (402)
Q Consensus 311 ~Lv~lL---~~~d~dv~E~aL~aL~~L~~~~~~~~~~~ 345 (402)
.+++.. ..+|.+++|..+.++..++.. |++.+
T Consensus 258 ~v~~y~~~~e~~dDELrE~~lQale~fl~r---cp~ei 292 (1233)
T KOG1824|consen 258 LVADYCNKIEEDDDELREYCLQALESFLRR---CPKEI 292 (1233)
T ss_pred HHHHHhcccccCcHHHHHHHHHHHHHHHHh---Chhhh
Confidence 777777 677899999999999999864 55544
No 96
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=95.88 E-value=0.58 Score=46.39 Aligned_cols=125 Identities=19% Similarity=0.237 Sum_probs=82.8
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCChhcHHH
Q 015709 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNLAGQEM 253 (402)
Q Consensus 175 gl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s-~~~~vr~kAl~ALS~LiR~~~~~~~~ 253 (402)
.++++..+|.+.++.+|..|+.+||.+- +| ..++.|+.++.. .+..+|..|.++|..+- .+.
T Consensus 75 av~~l~~~l~d~~~~vr~~a~~aLg~~~--~~---------~a~~~li~~l~~d~~~~vR~~aa~aL~~~~--~~~---- 137 (335)
T COG1413 75 AVPLLRELLSDEDPRVRDAAADALGELG--DP---------EAVPPLVELLENDENEGVRAAAARALGKLG--DER---- 137 (335)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHccC--Ch---------hHHHHHHHHHHcCCcHhHHHHHHHHHHhcC--chh----
Confidence 5788889999999999999999888874 33 368999999995 66789999999999763 222
Q ss_pred HHhcCcHHHHHHhhcCCC----------ccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHH
Q 015709 254 FYVEAGDLMLQDILGNSS----------FEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDL 323 (402)
Q Consensus 254 f~~~gGi~~L~~lL~s~~----------~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv 323 (402)
++..|...++++. ....+|..++..+..+- +...++.+...+...+.++
T Consensus 138 -----a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~----------------~~~~~~~l~~~l~~~~~~v 196 (335)
T COG1413 138 -----ALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELG----------------DPEAIPLLIELLEDEDADV 196 (335)
T ss_pred -----hhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcC----------------ChhhhHHHHHHHhCchHHH
Confidence 2566666666542 11123444555544432 2334455555566665566
Q ss_pred HHHHHHHHHHHhcC
Q 015709 324 QEKALAAIKNLLQL 337 (402)
Q Consensus 324 ~E~aL~aL~~L~~~ 337 (402)
+..+..+|..+...
T Consensus 197 r~~Aa~aL~~~~~~ 210 (335)
T COG1413 197 RRAAASALGQLGSE 210 (335)
T ss_pred HHHHHHHHHHhhcc
Confidence 66666666666554
No 97
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.76 E-value=0.18 Score=54.57 Aligned_cols=151 Identities=13% Similarity=0.076 Sum_probs=108.9
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHh------cC-CHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 015709 130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSK------LG-GLSVLVGQLNHPDTDIRKISAWILGKAS 202 (402)
Q Consensus 130 ~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~------lG-gl~~Li~lL~s~~~~Ir~~Aa~vLg~~a 202 (402)
++++..+.+.|.+++.+ -.+.|+.+|..++|+. |.-+.. +. .+|.++++.+|++|.||..|..|+-...
T Consensus 127 pelLp~L~~~L~s~d~n--~~EgA~~AL~KIcEDs--a~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i 202 (885)
T KOG2023|consen 127 PELLPQLCELLDSPDYN--TCEGAFGALQKICEDS--AQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFI 202 (885)
T ss_pred hhHHHHHHHHhcCCccc--ccchhHHHHHHHHhhh--HHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhhee
Confidence 56777788888876532 3456777777777753 222222 22 4788899999999999999999998887
Q ss_pred cCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHH--hcCcHHHHHHhhcCCCccHHHHHHH
Q 015709 203 QNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFY--VEAGDLMLQDILGNSSFEIRLHRKA 280 (402)
Q Consensus 203 qNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~--~~gGi~~L~~lL~s~~~d~klq~kA 280 (402)
-.++..-..-++ ..++.|..+.++++++||+..+.|+.-++.-.+. .+. -.|.++.+.+.-++. |..+...|
T Consensus 203 ~~~~qal~~~iD-~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d---kl~phl~~IveyML~~tqd~--dE~VALEA 276 (885)
T KOG2023|consen 203 IIQTQALYVHID-KFLEILFALANDEDPEVRKNVCRALVFLLEVRPD---KLVPHLDNIVEYMLQRTQDV--DENVALEA 276 (885)
T ss_pred ecCcHHHHHHHH-HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH---hcccchHHHHHHHHHHccCc--chhHHHHH
Confidence 665432222222 4678888899888899999999999998876554 333 246778877777765 56688999
Q ss_pred HHHHHHHhhc
Q 015709 281 VSLVGDLAKC 290 (402)
Q Consensus 281 ~~lL~~L~~~ 290 (402)
+-+...++.+
T Consensus 277 CEFwla~aeq 286 (885)
T KOG2023|consen 277 CEFWLALAEQ 286 (885)
T ss_pred HHHHHHHhcC
Confidence 9999999853
No 98
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.74 E-value=0.44 Score=52.76 Aligned_cols=160 Identities=14% Similarity=0.186 Sum_probs=102.0
Q ss_pred HhHHHHHHHHHHcC-CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHH
Q 015709 112 KRQMEIKELMEKLK-TPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDI 190 (402)
Q Consensus 112 ~r~~~L~ea~~~l~-~~~d~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~I 190 (402)
+|.+-+|..+..|. |.+-..+.-..++... +.+.|.|.-.---|+.+-+ ... +...+ .+..+.+=|.++|+.|
T Consensus 35 ~kidAmK~iIa~M~~G~dmssLf~dViK~~~--trd~ElKrL~ylYl~~yak-~~P--~~~lL-avNti~kDl~d~N~~i 108 (757)
T COG5096 35 KKIDAMKKIIAQMSLGEDMSSLFPDVIKNVA--TRDVELKRLLYLYLERYAK-LKP--ELALL-AVNTIQKDLQDPNEEI 108 (757)
T ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHhc-cCH--HHHHH-HHHHHHhhccCCCHHH
Confidence 45566666666663 4443333333333333 2244544333222222222 111 22211 4566777788999999
Q ss_pred HHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCC
Q 015709 191 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS 270 (402)
Q Consensus 191 r~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~ 270 (402)
|..|.+.++.+= -++.- ...++++.+++.++++-||..|+.||..+-+-.+ +.+.+.|-+..+..++.+.
T Consensus 109 R~~AlR~ls~l~--~~el~-----~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~---~l~~~~g~~~~l~~l~~D~ 178 (757)
T COG5096 109 RGFALRTLSLLR--VKELL-----GNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK---DLYHELGLIDILKELVADS 178 (757)
T ss_pred HHHHHHHHHhcC--hHHHH-----HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH---hhhhcccHHHHHHHHhhCC
Confidence 999999998874 22222 2467899999999999999999999999876544 4666778888888888765
Q ss_pred CccHHHHHHHHHHHHHHhh
Q 015709 271 SFEIRLHRKAVSLVGDLAK 289 (402)
Q Consensus 271 ~~d~klq~kA~~lL~~L~~ 289 (402)
++.+.+.|...+..+..
T Consensus 179 --dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 179 --DPIVIANALASLAEIDP 195 (757)
T ss_pred --CchHHHHHHHHHHHhch
Confidence 67788888888887754
No 99
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=95.64 E-value=0.37 Score=46.91 Aligned_cols=196 Identities=14% Similarity=0.105 Sum_probs=122.9
Q ss_pred CHHHHHHHHHHHHHccCCCC-chhHH-HhcCCHHHHHHh-------cCCCC--H---HHHHHHHHHHHHHhcCChHhHHH
Q 015709 146 SLEDSQRALQELLILVEPID-NANDL-SKLGGLSVLVGQ-------LNHPD--T---DIRKISAWILGKASQNNPLVQKQ 211 (402)
Q Consensus 146 t~e~k~~AL~~L~~Lve~iD-nA~~l-~~lGgl~~Li~l-------L~s~~--~---~Ir~~Aa~vLg~~aqNNp~~Q~~ 211 (402)
+++.|+.|+.+|..--+..+ .|--+ +..|-+..|++- |..++ + .--..|..++-.+|+ +|+.+..
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr~~ 86 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETRMP 86 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHHHH
Confidence 46889999999998777754 34333 345666666542 33222 2 222444455555665 8999999
Q ss_pred HHHcCcHHHHHHhhcCCC-----HHHHHHHHHHHHHHhcCC-hhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHH
Q 015709 212 VLELGALSKLMKMVKSSF-----VEEAVKALYTVSSLIRNN-LAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVG 285 (402)
Q Consensus 212 ~le~g~L~~Ll~LL~s~~-----~~vr~kAl~ALS~LiR~~-~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~ 285 (402)
|++....-.|.-+|+..+ +-+|..++.-|++++..+ +....-+....-++...+.+..+ +...|.-|.|.+.
T Consensus 87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~G--selSKtvAtfIlq 164 (262)
T PF04078_consen 87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFG--SELSKTVATFILQ 164 (262)
T ss_dssp HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS---HHHHHHHHHHHH
T ss_pred HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhc--cHHHHHHHHHHHH
Confidence 999987666666666543 235889999999999874 45555566788999999999875 4567889999999
Q ss_pred HHhhcc--cccCCCCcchhHHh-CCcHHHHHH-hhcCCChHHHHHHHHHHHHHhcCChhhHHHHH
Q 015709 286 DLAKCQ--LENMHKVEPPLFRD-RFFLKSVVD-LTASADLDLQEKALAAIKNLLQLRTTEALVLK 346 (402)
Q Consensus 286 ~L~~~~--l~~~~~~~~~~l~~-~g~v~~Lv~-lL~~~d~dv~E~aL~aL~~L~~~~~~~~~~~~ 346 (402)
-+.... +... -...+.|.. ..++..++. +...+++.+..++.++-..|..++. .+..++
T Consensus 165 KIL~dd~GL~yi-C~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnpr-ar~aL~ 227 (262)
T PF04078_consen 165 KILLDDVGLNYI-CQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPR-AREALR 227 (262)
T ss_dssp HHHHSHHHHHHH-TSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTT-HHHHHH
T ss_pred HHHcchhHHHHH-hcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHH-HHHHHH
Confidence 887532 1000 011122211 223333343 4456689999999999999998764 444443
No 100
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.59 E-value=0.98 Score=49.71 Aligned_cols=228 Identities=11% Similarity=0.038 Sum_probs=138.8
Q ss_pred CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCH------------HHHHHhcCCCCHHHHHHHH
Q 015709 128 SDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGL------------SVLVGQLNHPDTDIRKISA 195 (402)
Q Consensus 128 ~d~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl------------~~Li~lL~s~~~~Ir~~Aa 195 (402)
+=+.-+..+-++|.|.......|..|--.|-+-+..-|....-.=..-| .-++.-|.++.|.....|+
T Consensus 32 nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl~l~~e~reqVK~~il~tL~~~ep~~~s~Aa 111 (859)
T KOG1241|consen 32 NFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWLQLPAEIREQVKNNILRTLGSPEPRRPSSAA 111 (859)
T ss_pred cHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCCccchHH
Confidence 3455666777777777666666666666666655444432211100001 1234566788888889999
Q ss_pred HHHHHHhcC-ChHhHHHHHHcCcHHHHHHhhcCCCHH-HHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCcc
Q 015709 196 WILGKASQN-NPLVQKQVLELGALSKLMKMVKSSFVE-EAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFE 273 (402)
Q Consensus 196 ~vLg~~aqN-Np~~Q~~~le~g~L~~Ll~LL~s~~~~-vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d 273 (402)
.|++.+|.- =|..|= -+.++.|+....++.+. ++..++-||+-++.+-.+..-.=.....+..+++-.....++
T Consensus 112 q~va~IA~~ElP~n~w----p~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s 187 (859)
T KOG1241|consen 112 QCVAAIACIELPQNQW----PELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETS 187 (859)
T ss_pred HHHHHHHHhhCchhhC----HHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCc
Confidence 999988742 111110 14566666666665544 789999999999988544311111234666666666654456
Q ss_pred HHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChhhHHHHHhcC---C
Q 015709 274 IRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFC---G 350 (402)
Q Consensus 274 ~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~---G 350 (402)
..+|.-|..+|.+=..-. ...+...-..+-+++.+++.-.++|..++.+|+.+|..+++.- -+.+...- =
T Consensus 188 ~~vRLaa~~aL~nsLef~----~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~Ly---Y~~m~~yM~~al 260 (859)
T KOG1241|consen 188 AAVRLAALNALYNSLEFT----KANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLY---YEFMEPYMEQAL 260 (859)
T ss_pred hhHHHHHHHHHHHHHHHH----HHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 778889998888644211 1111112223445667778888999999999999999998752 22222111 1
Q ss_pred cHHHHHHHHHHhHHhh
Q 015709 351 LDTALERLRQQLQEVM 366 (402)
Q Consensus 351 L~~~L~~L~~~~~~l~ 366 (402)
+.-++..+++++++..
T Consensus 261 faitl~amks~~deVa 276 (859)
T KOG1241|consen 261 FAITLAAMKSDNDEVA 276 (859)
T ss_pred HHHHHHHHcCCcHHHH
Confidence 3456788888888754
No 101
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=95.42 E-value=0.16 Score=49.41 Aligned_cols=101 Identities=18% Similarity=0.080 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHccC-CCCchhHHHhcCCHHHHHHhc-CCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhc
Q 015709 149 DSQRALQELLILVE-PIDNANDLSKLGGLSVLVGQL-NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK 226 (402)
Q Consensus 149 ~k~~AL~~L~~Lve-~iDnA~~l~~lGgl~~Li~lL-~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~ 226 (402)
....||+.|+.++- +.+...-|+..+++..|+++| .+..+.|+..+..++-.+.-.+|.++..|-+.+|+..++.+++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 46678999999774 356677899999999999999 4567999999999999999999999999999999999999999
Q ss_pred CCC--HHHHHHHHHHHHHHhcCChh
Q 015709 227 SSF--VEEAVKALYTVSSLIRNNLA 249 (402)
Q Consensus 227 s~~--~~vr~kAl~ALS~LiR~~~~ 249 (402)
+.+ .++|.|.+--|--.+-.-.+
T Consensus 187 ~~~~~~~~r~K~~EFL~fyl~~E~~ 211 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYFYLMPETP 211 (257)
T ss_pred cccccHHHhHHHHHHHHHHHcccCC
Confidence 875 56788877666655544333
No 102
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=95.40 E-value=0.44 Score=43.45 Aligned_cols=90 Identities=20% Similarity=0.180 Sum_probs=71.9
Q ss_pred CHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhc-C-cHHHHH
Q 015709 187 DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVE-A-GDLMLQ 264 (402)
Q Consensus 187 ~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~-g-Gi~~L~ 264 (402)
+|.||..+.-++|-++...|..-+ ..+|.+...|+++++.+|..|+..|+.|+.+.. ++. | .+..+.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~------ik~k~~l~~~~l 69 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM------IKVKGQLFSRIL 69 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc------eeehhhhhHHHH
Confidence 588999999999999988775444 357999999999999999999999999987632 222 2 225566
Q ss_pred HhhcCCCccHHHHHHHHHHHHHHhh
Q 015709 265 DILGNSSFEIRLHRKAVSLVGDLAK 289 (402)
Q Consensus 265 ~lL~s~~~d~klq~kA~~lL~~L~~ 289 (402)
.++.++ ++.++.-|..++..+..
T Consensus 70 ~~l~D~--~~~Ir~~A~~~~~e~~~ 92 (178)
T PF12717_consen 70 KLLVDE--NPEIRSLARSFFSELLK 92 (178)
T ss_pred HHHcCC--CHHHHHHHHHHHHHHHH
Confidence 777765 67899999999999875
No 103
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=95.37 E-value=0.15 Score=47.70 Aligned_cols=132 Identities=14% Similarity=0.029 Sum_probs=84.5
Q ss_pred HHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCH
Q 015709 151 QRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFV 230 (402)
Q Consensus 151 ~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~ 230 (402)
..|+..+..++......-+-+--..+|+|+..+.+++.-|+..|..+|.+++++.+..... .++.+....++.++
T Consensus 71 ~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~-----~~~~l~~~~~~Kn~ 145 (228)
T PF12348_consen 71 KTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI-----LLEILSQGLKSKNP 145 (228)
T ss_dssp HHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH-----HHHHHHHHTT-S-H
T ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH-----HHHHHHHHHhCCCH
Confidence 4677777777765544422222335788999999999999999999999999987622221 14666677888889
Q ss_pred HHHHHHHHHHHHHhcCChhcHHHHHh----cCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015709 231 EEAVKALYTVSSLIRNNLAGQEMFYV----EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (402)
Q Consensus 231 ~vr~kAl~ALS~LiR~~~~~~~~f~~----~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~ 289 (402)
.+|..++-.+..++..++.....+-. ..-++.+..++.+. ++.+|..|-.++..+..
T Consensus 146 ~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~--~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 146 QVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDA--DPEVREAARECLWALYS 206 (228)
T ss_dssp HHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHHHH
Confidence 99999999999988887722222211 23556777778776 67788888888887754
No 104
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=95.33 E-value=0.081 Score=43.87 Aligned_cols=66 Identities=15% Similarity=0.140 Sum_probs=50.7
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHc--CcHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 015709 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL--GALSKLMKMVKSSFVEEAVKALYTVSSLI 244 (402)
Q Consensus 175 gl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~--g~L~~Ll~LL~s~~~~vr~kAl~ALS~Li 244 (402)
-++|++.++..++..||..||.+|.+++.. .+..++.+ ..++.|.+++.+.++.||..| .-|-.++
T Consensus 28 Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~---~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 28 ILPPVLKCFDDQDSRVRYYACEALYNISKV---ARGEILPYFNEIFDALCKLSADPDENVRSAA-ELLDRLL 95 (97)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHHHh
Confidence 489999999999999999999999999964 44555543 567888888888777777555 4444443
No 105
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=95.19 E-value=0.31 Score=48.37 Aligned_cols=92 Identities=18% Similarity=0.157 Sum_probs=74.7
Q ss_pred CCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHH
Q 015709 174 GGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEM 253 (402)
Q Consensus 174 Ggl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~ 253 (402)
-.++.++.++.+++..+|..|++.++..... -++|.|..++.+.+..+|..|+++|+.+ +++.
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~-----------~av~~l~~~l~d~~~~vr~~a~~aLg~~--~~~~---- 105 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGSE-----------EAVPLLRELLSDEDPRVRDAAADALGEL--GDPE---- 105 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhchH-----------HHHHHHHHHhcCCCHHHHHHHHHHHHcc--CChh----
Confidence 4688889999999999999999998777632 3689999999999999999999988876 3343
Q ss_pred HHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHh
Q 015709 254 FYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLA 288 (402)
Q Consensus 254 f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~ 288 (402)
.++.|+.++..+ .+..+|..++++|..+-
T Consensus 106 -----a~~~li~~l~~d-~~~~vR~~aa~aL~~~~ 134 (335)
T COG1413 106 -----AVPPLVELLEND-ENEGVRAAAARALGKLG 134 (335)
T ss_pred -----HHHHHHHHHHcC-CcHhHHHHHHHHHHhcC
Confidence 556778888852 36789999999999874
No 106
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=95.03 E-value=0.57 Score=48.48 Aligned_cols=109 Identities=16% Similarity=0.121 Sum_probs=81.7
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHh-------------HHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHH
Q 015709 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLV-------------QKQVLELGALSKLMKMVKSSFVEEAVKALYTVSS 242 (402)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~-------------Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~ 242 (402)
+..|+.+|.+ +++...|+..++.+....+.+ ++.|.. -.+|+|++-.++.+.+.+..-+.|||.
T Consensus 273 ~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~-~~~p~L~~~~~~~~~~~k~~yL~ALs~ 349 (415)
T PF12460_consen 273 LDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFT-QVLPKLLEGFKEADDEIKSNYLTALSH 349 (415)
T ss_pred HHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHH-HHHHHHHHHHhhcChhhHHHHHHHHHH
Confidence 4556777766 788899999999999874433 333332 368999999988777788999999999
Q ss_pred HhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015709 243 LIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (402)
Q Consensus 243 LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~ 289 (402)
++++-|...-.=.-..-+++|.+.|..+ +..++.-++..+..++.
T Consensus 350 ll~~vP~~vl~~~l~~LlPLLlqsL~~~--~~~v~~s~L~tL~~~l~ 394 (415)
T PF12460_consen 350 LLKNVPKSVLLPELPTLLPLLLQSLSLP--DADVLLSSLETLKMILE 394 (415)
T ss_pred HHhhCCHHHHHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHH
Confidence 9998775332222245788999999876 55688899999998885
No 107
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=94.79 E-value=4.4 Score=41.07 Aligned_cols=151 Identities=17% Similarity=0.123 Sum_probs=107.5
Q ss_pred CHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcC---cHHHH
Q 015709 187 DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA---GDLML 263 (402)
Q Consensus 187 ~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~g---Gi~~L 263 (402)
++++--.+-.+|..++.. +.+-..+++...+-.+.+.+..++=++...|...+..+...|+.....|+..+ =+...
T Consensus 136 ~~dial~~g~mlRec~k~-e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~ 214 (335)
T PF08569_consen 136 NPDIALNCGDMLRECIKH-ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKY 214 (335)
T ss_dssp STTTHHHHHHHHHHHTTS-HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHH
T ss_pred CccccchHHHHHHHHHhh-HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 455555666666666654 44555666677777788888777778899999999998888888888888765 34577
Q ss_pred HHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCc-chhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChhhH
Q 015709 264 QDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVE-PPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEA 342 (402)
Q Consensus 264 ~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~-~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~~ 342 (402)
..+|.++ +.=.|+.++-+|+.|.... .+... ...+.+..-++.++.+|+++...+|-.|-....-.+..+.+.+
T Consensus 215 ~~Ll~s~--NYvtkrqslkLL~ellldr---~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~ 289 (335)
T PF08569_consen 215 NKLLESS--NYVTKRQSLKLLGELLLDR---SNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPP 289 (335)
T ss_dssp HHHCT-S--SHHHHHHHHHHHHHHHHSG---GGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BH
T ss_pred HHHccCC--CeEeehhhHHHHHHHHHch---hHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCCh
Confidence 7888887 4558999999999998531 12111 2344466788999999999999999999999999988876544
Q ss_pred H
Q 015709 343 L 343 (402)
Q Consensus 343 ~ 343 (402)
.
T Consensus 290 ~ 290 (335)
T PF08569_consen 290 P 290 (335)
T ss_dssp H
T ss_pred H
Confidence 3
No 108
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=94.71 E-value=0.92 Score=51.07 Aligned_cols=190 Identities=17% Similarity=0.130 Sum_probs=107.6
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHH-HHHHhcCCCCHHHHHHHHHHHHHHhcCCh-Hh
Q 015709 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLS-VLVGQLNHPDTDIRKISAWILGKASQNNP-LV 208 (402)
Q Consensus 131 ~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~-~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp-~~ 208 (402)
.+.++.+..+.++..+.-.|+-|+-.|-++ +...+.....+++ .++..++|++++|+..|+.+||+++-+|- ..
T Consensus 817 s~a~kl~~~~~s~~s~~~ikvfa~LslGEl----gr~~~~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~y 892 (1233)
T KOG1824|consen 817 SLATKLIQDLQSPKSSDSIKVFALLSLGEL----GRRKDLSPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKY 892 (1233)
T ss_pred hHHHHHHHHHhCCCCchhHHHHHHhhhhhh----ccCCCCCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhH
Confidence 345556666666665656677777666653 3333333333444 56789999999999999999999998542 11
Q ss_pred HHHHHHc----------------------------CcHHHHHHhhcCC----CHHHHHHHHHHHHHHhcCChhcHHHHHh
Q 015709 209 QKQVLEL----------------------------GALSKLMKMVKSS----FVEEAVKALYTVSSLIRNNLAGQEMFYV 256 (402)
Q Consensus 209 Q~~~le~----------------------------g~L~~Ll~LL~s~----~~~vr~kAl~ALS~LiR~~~~~~~~f~~ 256 (402)
--.+++. -.++.++.+|... .+..|.-..-+|+-++-.+|.
T Consensus 893 Lpfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epe------- 965 (1233)
T KOG1824|consen 893 LPFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPE------- 965 (1233)
T ss_pred HHHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChH-------
Confidence 1111110 1122222222211 011222223333333332221
Q ss_pred cCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhc
Q 015709 257 EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 336 (402)
Q Consensus 257 ~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~ 336 (402)
--++.|...+.++. ...|.-++.++.+.... ++.-.+.+.. ..+.....+++.+|..++..|+.++.+.+.
T Consensus 966 -sLlpkL~~~~~S~a--~~~rs~vvsavKfsisd-----~p~~id~~lk-~~ig~fl~~~~dpDl~VrrvaLvv~nSaah 1036 (1233)
T KOG1824|consen 966 -SLLPKLKLLLRSEA--SNTRSSVVSAVKFSISD-----QPQPIDPLLK-QQIGDFLKLLRDPDLEVRRVALVVLNSAAH 1036 (1233)
T ss_pred -HHHHHHHHHhcCCC--cchhhhhhheeeeeecC-----CCCccCHHHH-HHHHHHHHHHhCCchhHHHHHHHHHHHHHc
Confidence 12455566666653 33566666666666532 3343333333 346677788999999999999999999988
Q ss_pred CChh
Q 015709 337 LRTT 340 (402)
Q Consensus 337 ~~~~ 340 (402)
+.+.
T Consensus 1037 NKps 1040 (1233)
T KOG1824|consen 1037 NKPS 1040 (1233)
T ss_pred cCHh
Confidence 7544
No 109
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.71 E-value=0.48 Score=51.45 Aligned_cols=158 Identities=15% Similarity=0.106 Sum_probs=112.4
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHH-HHHc---CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhc
Q 015709 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ-VLEL---GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG 250 (402)
Q Consensus 175 gl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~-~le~---g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~ 250 (402)
++|.|..+|.+++......|..+|..++...+..-+. +... -.+|++++++++.++.+|..|+.++-..+-..+.+
T Consensus 129 lLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qa 208 (885)
T KOG2023|consen 129 LLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQA 208 (885)
T ss_pred HHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHH
Confidence 4556667889999999999999999999876543222 1111 25899999999999999999999998866554332
Q ss_pred ----HHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHH
Q 015709 251 ----QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEK 326 (402)
Q Consensus 251 ----~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~ 326 (402)
.+.|+ +.|..+-.+ .++.+|...+..+..|..-. .....+.+ .++++.+.......|..+--.
T Consensus 209 l~~~iD~Fl-----e~lFalanD--~~~eVRk~vC~alv~Llevr----~dkl~phl--~~IveyML~~tqd~dE~VALE 275 (885)
T KOG2023|consen 209 LYVHIDKFL-----EILFALAND--EDPEVRKNVCRALVFLLEVR----PDKLVPHL--DNIVEYMLQRTQDVDENVALE 275 (885)
T ss_pred HHHHHHHHH-----HHHHHHccC--CCHHHHHHHHHHHHHHHHhc----HHhcccch--HHHHHHHHHHccCcchhHHHH
Confidence 22232 333333333 36789999999999998531 11222222 578888888888888888888
Q ss_pred HHHHHHHHhcCChhhHHHHH
Q 015709 327 ALAAIKNLLQLRTTEALVLK 346 (402)
Q Consensus 327 aL~aL~~L~~~~~~~~~~~~ 346 (402)
|.....+++..+ .|+.++.
T Consensus 276 ACEFwla~aeqp-i~~~~L~ 294 (885)
T KOG2023|consen 276 ACEFWLALAEQP-ICKEVLQ 294 (885)
T ss_pred HHHHHHHHhcCc-CcHHHHH
Confidence 888889999887 5777665
No 110
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=94.65 E-value=0.064 Score=34.71 Aligned_cols=29 Identities=14% Similarity=0.190 Sum_probs=26.2
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 015709 218 LSKLMKMVKSSFVEEAVKALYTVSSLIRN 246 (402)
Q Consensus 218 L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~ 246 (402)
+|.++++++++++.||..|+++|+.++++
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 79999999999999999999999999875
No 111
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=94.58 E-value=0.17 Score=39.91 Aligned_cols=65 Identities=17% Similarity=0.277 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCChhcHHHHHhc
Q 015709 191 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVE 257 (402)
Q Consensus 191 r~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~-~~vr~kAl~ALS~LiR~~~~~~~~f~~~ 257 (402)
...|.|++|+++.. |.-...+.+.+.++.++++..+.+ ..+|--|.|+|+=+.+ .+.+.+.+.+.
T Consensus 4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~-T~~G~~~L~~~ 69 (73)
T PF14668_consen 4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS-TEEGAEILDEL 69 (73)
T ss_pred HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC-CHHHHHHHHHc
Confidence 46799999999984 555566667899999999999766 5889999999996655 55655555443
No 112
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.48 E-value=0.84 Score=49.95 Aligned_cols=143 Identities=13% Similarity=0.209 Sum_probs=86.0
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHH----HHHc-----------------------------CcHHHH
Q 015709 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ----VLEL-----------------------------GALSKL 221 (402)
Q Consensus 175 gl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~----~le~-----------------------------g~L~~L 221 (402)
.+|.|..=|..++|.|+..|..||..+|.-||+.--. |.+. ..+|+|
T Consensus 182 ~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLiepl 261 (877)
T KOG1059|consen 182 CFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPI 261 (877)
T ss_pred hHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHH
Confidence 4677788888999999999999999999887732110 0110 234444
Q ss_pred HHhhcC-------------------------------------------CCHHHHHHHHHHHHHHhcCChhcHHHHHhcC
Q 015709 222 MKMVKS-------------------------------------------SFVEEAVKALYTVSSLIRNNLAGQEMFYVEA 258 (402)
Q Consensus 222 l~LL~s-------------------------------------------~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~g 258 (402)
..++.+ +++..+--.+.|+|-+...||.+.+++.
T Consensus 262 t~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~k--- 338 (877)
T KOG1059|consen 262 TELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHK--- 338 (877)
T ss_pred HHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhH---
Confidence 444333 3334444556666666666666555543
Q ss_pred cHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhh-cCCChHHHHHHHHHHHHHhc
Q 015709 259 GDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLT-ASADLDLQEKALAAIKNLLQ 336 (402)
Q Consensus 259 Gi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL-~~~d~dv~E~aL~aL~~L~~ 336 (402)
++++.||.+. |+.+|.+|+-+++-++.. ..... +++.|...+ ..+....+...+.-+..+++
T Consensus 339 --dlIlrcL~Dk--D~SIRlrALdLl~gmVsk-------kNl~e-----IVk~LM~~~~~ae~t~yrdell~~II~iCS 401 (877)
T KOG1059|consen 339 --DLILRCLDDK--DESIRLRALDLLYGMVSK-------KNLME-----IVKTLMKHVEKAEGTNYRDELLTRIISICS 401 (877)
T ss_pred --HHHHHHhccC--CchhHHHHHHHHHHHhhh-------hhHHH-----HHHHHHHHHHhccchhHHHHHHHHHHHHhh
Confidence 5678888875 667888999999988742 22222 334444433 33334566555555544444
No 113
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=94.47 E-value=1.2 Score=45.80 Aligned_cols=83 Identities=14% Similarity=0.118 Sum_probs=69.0
Q ss_pred CHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhc-CC---CHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHH
Q 015709 187 DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK-SS---FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLM 262 (402)
Q Consensus 187 ~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~-s~---~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~ 262 (402)
-+.|-..|+.++.+...|.|.+-..+.+.|.++.+++-+. .. +.++-...-.+|++++= |..+.++|.+.+.++.
T Consensus 122 G~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL-N~~Gl~~~~~~~~l~~ 200 (379)
T PF06025_consen 122 GPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICL-NNRGLEKVKSSNPLDK 200 (379)
T ss_pred chHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc-CHHHHHHHHhcChHHH
Confidence 4789999999999999999999999999999999999888 33 23444455566666665 5688999999999999
Q ss_pred HHHhhcCC
Q 015709 263 LQDILGNS 270 (402)
Q Consensus 263 L~~lL~s~ 270 (402)
+.+++.++
T Consensus 201 ~f~if~s~ 208 (379)
T PF06025_consen 201 LFEIFTSP 208 (379)
T ss_pred HHHHhCCH
Confidence 99998875
No 114
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=94.46 E-value=0.93 Score=45.67 Aligned_cols=198 Identities=15% Similarity=0.154 Sum_probs=132.8
Q ss_pred HHHHHHHHHHhhcCCC--CHHHHHHHHHHHHHccCCCC-ch----hHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 015709 130 AQLIQIAIDDLNNSTL--SLEDSQRALQELLILVEPID-NA----NDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKAS 202 (402)
Q Consensus 130 ~~lMk~al~~L~~~~~--t~e~k~~AL~~L~~Lve~iD-nA----~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~a 202 (402)
+-+....+.+|.-.-. +.-.|.-++..+-.++|+.| |+ ...++.|.++.++.++..++.++-..|...|..++
T Consensus 77 ahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikria 156 (524)
T KOG4413|consen 77 AHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIA 156 (524)
T ss_pred hhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 4445555555544322 22357788888989999888 33 24456788899999999999999999999999998
Q ss_pred cCChHhHHHHHHcCcHHHH--HHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHH
Q 015709 203 QNNPLVQKQVLELGALSKL--MKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKA 280 (402)
Q Consensus 203 qNNp~~Q~~~le~g~L~~L--l~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA 280 (402)
- -|..-+.+.+.+.+..+ ..+....+.-+|...+.-|--+-.-+|.........|-+..|..=|+.. .|.-++..+
T Consensus 157 l-fpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGt-eDtLVianc 234 (524)
T KOG4413|consen 157 L-FPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGT-EDTLVIANC 234 (524)
T ss_pred h-cHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCC-cceeehhhH
Confidence 5 56666777776655443 2333333333455544444333333556666777788888888888875 366688899
Q ss_pred HHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHH--HHHHHHHHHh
Q 015709 281 VSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQE--KALAAIKNLL 335 (402)
Q Consensus 281 ~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E--~aL~aL~~L~ 335 (402)
.-+++.|+.. ...++++-+.|++..+.+.+...|.+--+ .++.....+.
T Consensus 235 iElvteLaet------eHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkff 285 (524)
T KOG4413|consen 235 IELVTELAET------EHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFF 285 (524)
T ss_pred HHHHHHHHHH------hhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHh
Confidence 9999999852 35567788899999999988765444333 3444444444
No 115
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.38 E-value=2.5 Score=46.57 Aligned_cols=161 Identities=14% Similarity=0.147 Sum_probs=107.1
Q ss_pred HhHHHHHHHHHHcC-CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHH
Q 015709 112 KRQMEIKELMEKLK-TPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDI 190 (402)
Q Consensus 112 ~r~~~L~ea~~~l~-~~~d~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~I 190 (402)
+|+.-+|+++..|+ |+|-..+--.-++-.... +.+.|.-.-.-+. +.-..+-....+.+..++.=..++++.|
T Consensus 29 kr~~a~kkvIa~Mt~G~DvSslF~dvvk~~~T~--dlelKKlvyLYl~----nYa~~~P~~a~~avnt~~kD~~d~np~i 102 (734)
T KOG1061|consen 29 KRKDAVKKVIAYMTVGKDVSSLFPDVVKCMQTR--DLELKKLVYLYLM----NYAKGKPDLAILAVNTFLKDCEDPNPLI 102 (734)
T ss_pred hHHHHHHHHHhcCccCcchHhhhHHHHhhcccC--CchHHHHHHHHHH----HhhccCchHHHhhhhhhhccCCCCCHHH
Confidence 68888899998886 444233322222222222 2344433222222 2222233334556667777778899999
Q ss_pred HHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCC
Q 015709 191 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS 270 (402)
Q Consensus 191 r~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~ 270 (402)
|..|.+.+|.+- -++..+. ...+|...++++.+-+|..|...+..+-+-+ .+.+...|-++.|..++.+.
T Consensus 103 R~lAlrtm~~l~--v~~i~ey-----~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~---~~~~~~~gl~~~L~~ll~D~ 172 (734)
T KOG1061|consen 103 RALALRTMGCLR--VDKITEY-----LCDPLLKCLKDDDPYVRKTAAVCVAKLFDID---PDLVEDSGLVDALKDLLSDS 172 (734)
T ss_pred HHHHhhceeeEe--ehHHHHH-----HHHHHHHhccCCChhHHHHHHHHHHHhhcCC---hhhccccchhHHHHHHhcCC
Confidence 999998888775 3444443 4689999999999999999988888875444 35777889999999999964
Q ss_pred CccHHHHHHHHHHHHHHhhc
Q 015709 271 SFEIRLHRKAVSLVGDLAKC 290 (402)
Q Consensus 271 ~~d~klq~kA~~lL~~L~~~ 290 (402)
++-+...|+.++..+...
T Consensus 173 --~p~VVAnAlaaL~eI~e~ 190 (734)
T KOG1061|consen 173 --NPMVVANALAALSEIHES 190 (734)
T ss_pred --CchHHHHHHHHHHHHHHh
Confidence 556888999999988753
No 116
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=94.29 E-value=2 Score=39.02 Aligned_cols=90 Identities=20% Similarity=0.143 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCc-HHHHHHhhc
Q 015709 148 EDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGA-LSKLMKMVK 226 (402)
Q Consensus 148 e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~-L~~Ll~LL~ 226 (402)
.-|..++-.+-+++-...+.-+ .-++.+..+|+++++.||..|..+|..+.+++. +--.|- +..++.++.
T Consensus 3 ~vR~n~i~~l~DL~~r~~~~ve----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~-----ik~k~~l~~~~l~~l~ 73 (178)
T PF12717_consen 3 SVRNNAIIALGDLCIRYPNLVE----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM-----IKVKGQLFSRILKLLV 73 (178)
T ss_pred HHHHHHHHHHHHHHHhCcHHHH----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc-----eeehhhhhHHHHHHHc
Confidence 4455666666665544432211 136778899999999999999999999987643 111133 488888998
Q ss_pred CCCHHHHHHHHHHHHHHhcC
Q 015709 227 SSFVEEAVKALYTVSSLIRN 246 (402)
Q Consensus 227 s~~~~vr~kAl~ALS~LiR~ 246 (402)
++++++|..|...+..+...
T Consensus 74 D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 74 DENPEIRSLARSFFSELLKK 93 (178)
T ss_pred CCCHHHHHHHHHHHHHHHHh
Confidence 88999999999999998876
No 117
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=94.24 E-value=3.8 Score=44.13 Aligned_cols=173 Identities=16% Similarity=0.138 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhc--CChHhHHHHHHcCcHHHHHHhh
Q 015709 148 EDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQ--NNPLVQKQVLELGALSKLMKMV 225 (402)
Q Consensus 148 e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aq--NNp~~Q~~~le~g~L~~Ll~LL 225 (402)
..|..+++-+.-+.+..+-.-.++--..+|.+..-|..+.++||..+-.+|-.++. .||..|. .+|.|++-+
T Consensus 269 rtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~------~ip~Lld~l 342 (569)
T KOG1242|consen 269 RTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQK------IIPTLLDAL 342 (569)
T ss_pred hhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHH------HHHHHHHHh
Confidence 35777888887777666666666667788999999999999999999999977765 5777665 469999999
Q ss_pred cCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCC--CccHHHHHHHHHHHHHHhhcccccCCCCcchhH
Q 015709 226 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS--SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLF 303 (402)
Q Consensus 226 ~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~--~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l 303 (402)
.+++.. -.+++..|+.-. +- .+++.-.+.+++.+|+.. .-+..++++++-.+.|+|.. -.++....-+
T Consensus 343 ~dp~~~-~~e~~~~L~~tt--FV----~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~L---veDp~~lapf 412 (569)
T KOG1242|consen 343 ADPSCY-TPECLDSLGATT--FV----AEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKL---VEDPKDLAPF 412 (569)
T ss_pred cCcccc-hHHHHHhhccee--ee----eeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHh---hcCHHHHhhh
Confidence 875522 223444444311 11 223344555556655431 01334689999999999963 1233222211
Q ss_pred HhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcC
Q 015709 304 RDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 337 (402)
Q Consensus 304 ~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~ 337 (402)
. .-+++.+-..+....+++|+.+.+||+.+...
T Consensus 413 l-~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~ 445 (569)
T KOG1242|consen 413 L-PSLLPGLKENLDDAVPEVRAVAARALGALLER 445 (569)
T ss_pred H-HHHhhHHHHHhcCCChhHHHHHHHHHHHHHHH
Confidence 1 12445555555666899999999999988764
No 118
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.17 E-value=3.5 Score=43.09 Aligned_cols=181 Identities=17% Similarity=0.133 Sum_probs=130.7
Q ss_pred HHHHHHHHHHccCC-CCchhHHHhcCCHHHHHHhc--CCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhc
Q 015709 150 SQRALQELLILVEP-IDNANDLSKLGGLSVLVGQL--NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK 226 (402)
Q Consensus 150 k~~AL~~L~~Lve~-iDnA~~l~~lGgl~~Li~lL--~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~ 226 (402)
....+..++++++- .+.+...++.|.+.-|+.=+ +.+-...+.+|..+++-+-||+...+...-..+|+..|++-+.
T Consensus 199 v~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la 278 (536)
T KOG2734|consen 199 VHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLA 278 (536)
T ss_pred hHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcc
Confidence 45677777777763 24456667777777776633 4467788999999999999999999999989999999987665
Q ss_pred C----CC-----HHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCC
Q 015709 227 S----SF-----VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHK 297 (402)
Q Consensus 227 s----~~-----~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~ 297 (402)
- ++ .+.-....-+|+++++. +.+...|....|++...-+++.++ ..+--|...|-+...+. ...
T Consensus 279 ~yk~~dP~~~~E~EmmeNLFdcLCs~lm~-~~nr~~Fl~~EGlqLm~Lmlr~Kk---~sr~SalkvLd~am~g~---~gt 351 (536)
T KOG2734|consen 279 VYKRHDPATVDEEEMMENLFDCLCSLLMA-PANRERFLKGEGLQLMNLMLREKK---VSRGSALKVLDHAMFGP---EGT 351 (536)
T ss_pred hhhccCCCCcCHHHHHHHHHHHHHHHhcC-hhhhhhhhccccHHHHHHHHHHHH---HhhhhHHHHHHHHHhCC---Cch
Confidence 2 21 23456888899999985 788999999999999888887642 34666777787776531 122
Q ss_pred CcchhHHhCCcHHHHHHhhc-C---------CChHHHHHHHHHHHHHhcC
Q 015709 298 VEPPLFRDRFFLKSVVDLTA-S---------ADLDLQEKALAAIKNLLQL 337 (402)
Q Consensus 298 ~~~~~l~~~g~v~~Lv~lL~-~---------~d~dv~E~aL~aL~~L~~~ 337 (402)
..+..|++.+.++.+.-+.. . .-.+.-|++...|+++...
T Consensus 352 ~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~ 401 (536)
T KOG2734|consen 352 PNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRN 401 (536)
T ss_pred HHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHh
Confidence 45667777777766654432 1 1346778999888887763
No 119
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.08 E-value=0.49 Score=51.30 Aligned_cols=178 Identities=18% Similarity=0.116 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHccCCCCchhHHHhcCC--------------HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChH-----h
Q 015709 148 EDSQRALQELLILVEPIDNANDLSKLGG--------------LSVLVGQLNHPDTDIRKISAWILGKASQNNPL-----V 208 (402)
Q Consensus 148 e~k~~AL~~L~~Lve~iDnA~~l~~lGg--------------l~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~-----~ 208 (402)
.+++.+.+.|-+++++-|..--=+...| ....+..+..++..||..|...+.-..+-.|. .
T Consensus 194 ~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~ 273 (823)
T KOG2259|consen 194 HDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERES 273 (823)
T ss_pred ccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcccccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchh
Confidence 4566777778888877775522222333 45566788889999999986555444433320 1
Q ss_pred HHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcH----------------------HH-------------
Q 015709 209 QKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQ----------------------EM------------- 253 (402)
Q Consensus 209 Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~----------------------~~------------- 253 (402)
-+.=+.-.++..+...+++-+-.+|+.|.-+|+.+-.-+.... +.
T Consensus 274 ~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~ 353 (823)
T KOG2259|consen 274 EEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEW 353 (823)
T ss_pred hhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccc
Confidence 1111112356667777766655555555444444322111111 11
Q ss_pred ---------------HHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcC
Q 015709 254 ---------------FYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS 318 (402)
Q Consensus 254 ---------------f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~ 318 (402)
++.+|+-..+++.|.+. -..+|+.|+..++.|+.+ .|.+.. ..+..|+++++.
T Consensus 354 ~advpsee~d~~~~siI~sGACGA~VhGlEDE--f~EVR~AAV~Sl~~La~s-----sP~FA~-----~aldfLvDMfND 421 (823)
T KOG2259|consen 354 NADVPSEEDDEEEESIIPSGACGALVHGLEDE--FYEVRRAAVASLCSLATS-----SPGFAV-----RALDFLVDMFND 421 (823)
T ss_pred cccCchhhccccccccccccccceeeeechHH--HHHHHHHHHHHHHHHHcC-----CCCcHH-----HHHHHHHHHhcc
Confidence 22233445667777664 345788999999999853 344332 356789999999
Q ss_pred CChHHHHHHHHHHHHHhcC
Q 015709 319 ADLDLQEKALAAIKNLLQL 337 (402)
Q Consensus 319 ~d~dv~E~aL~aL~~L~~~ 337 (402)
+..++|.+|+.+|..++.+
T Consensus 422 E~~~VRL~ai~aL~~Is~~ 440 (823)
T KOG2259|consen 422 EIEVVRLKAIFALTMISVH 440 (823)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988765
No 120
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=93.97 E-value=2.9 Score=41.23 Aligned_cols=108 Identities=18% Similarity=0.190 Sum_probs=80.3
Q ss_pred CCHHHHH-HhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHH
Q 015709 174 GGLSVLV-GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQE 252 (402)
Q Consensus 174 Ggl~~Li-~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~ 252 (402)
+.+..|| ..+.++++.||..|..|+|-++-=+.+.-.. .++.+.+.++.++..++..|+.+|.-++.-|.. .
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~--~ 98 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQKDDEEVKITALKALFDLLLTHGI--D 98 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCc--h
Confidence 4566665 7889999999999999999999766543332 368888888777889999999999987776543 2
Q ss_pred HHHh----------cCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015709 253 MFYV----------EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (402)
Q Consensus 253 ~f~~----------~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~ 290 (402)
.|-. ..-..++...+.+. +..+|.-|+-.++-|.-.
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~--~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 99 IFDSESDNDESVDSKSLLKILTKFLDSE--NPELQAIAVEGLCKLLLS 144 (298)
T ss_pred hccchhccCccchHhHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHhc
Confidence 2222 23456677777775 567899999999988753
No 121
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.97 E-value=3.5 Score=45.30 Aligned_cols=131 Identities=20% Similarity=0.196 Sum_probs=92.9
Q ss_pred CHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhh
Q 015709 146 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV 225 (402)
Q Consensus 146 t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL 225 (402)
-+|..+.-+-.+-.-.++.|.-++|+. |-+..|+....+++..||...+.+|+.+.-+|...-+.+. .+...+|+.-+
T Consensus 58 i~dRIl~fla~fv~sl~q~d~e~DlV~-~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vf-n~l~e~l~~Rl 135 (892)
T KOG2025|consen 58 IPDRILSFLARFVESLPQLDKEEDLVA-GTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVF-NKLNEKLLIRL 135 (892)
T ss_pred cHHHHHHHHHHHHHhhhccCchhhHHH-HHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHH-HHHHHHHHHHH
Confidence 344444555566666678888888774 5677888888999999999999999999976665444443 45677777777
Q ss_pred cCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHH
Q 015709 226 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLV 284 (402)
Q Consensus 226 ~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL 284 (402)
.+..+.||..|+.|||-+-.. +. -. +......+..+++.+. ++.+|+-|+..|
T Consensus 136 ~Drep~VRiqAv~aLsrlQ~d-~~-de---e~~v~n~l~~liqnDp-S~EVRRaaLsnI 188 (892)
T KOG2025|consen 136 KDREPNVRIQAVLALSRLQGD-PK-DE---ECPVVNLLKDLIQNDP-SDEVRRAALSNI 188 (892)
T ss_pred hccCchHHHHHHHHHHHHhcC-CC-CC---cccHHHHHHHHHhcCC-cHHHHHHHHHhh
Confidence 777889999999999987522 11 11 2345667777777653 456777665443
No 122
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.92 E-value=0.55 Score=51.50 Aligned_cols=143 Identities=19% Similarity=0.168 Sum_probs=113.5
Q ss_pred CCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHH
Q 015709 174 GGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEM 253 (402)
Q Consensus 174 Ggl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~ 253 (402)
+.++.++.+....+-+++...---+.+-++.+|.-+. +++..+++=..+.++.+|..|+...+++ |- +....
T Consensus 49 slF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~-----~avnt~~kD~~d~np~iR~lAlrtm~~l-~v-~~i~e- 120 (734)
T KOG1061|consen 49 SLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAI-----LAVNTFLKDCEDPNPLIRALALRTMGCL-RV-DKITE- 120 (734)
T ss_pred hhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHHH-----hhhhhhhccCCCCCHHHHHHHhhceeeE-ee-hHHHH-
Confidence 3578889999888899999999999999999996443 5677788877788889999999998876 32 22122
Q ss_pred HHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHH
Q 015709 254 FYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKN 333 (402)
Q Consensus 254 f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~ 333 (402)
.-..+|..+++++ ++.+|+.|+..+..+-. ...+...+.|++..|-+++...++.+.-.|+.+|..
T Consensus 121 ----y~~~Pl~~~l~d~--~~yvRktaa~~vakl~~--------~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~e 186 (734)
T KOG1061|consen 121 ----YLCDPLLKCLKDD--DPYVRKTAAVCVAKLFD--------IDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSE 186 (734)
T ss_pred ----HHHHHHHHhccCC--ChhHHHHHHHHHHHhhc--------CChhhccccchhHHHHHHhcCCCchHHHHHHHHHHH
Confidence 2457889999986 56688888888887742 234456789999999999998899999999999999
Q ss_pred HhcCC
Q 015709 334 LLQLR 338 (402)
Q Consensus 334 L~~~~ 338 (402)
+....
T Consensus 187 I~e~~ 191 (734)
T KOG1061|consen 187 IHESH 191 (734)
T ss_pred HHHhC
Confidence 88764
No 123
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=93.89 E-value=6.1 Score=40.88 Aligned_cols=192 Identities=19% Similarity=0.230 Sum_probs=114.2
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhc-CCCCHHHHHHHH----HHH-HH
Q 015709 127 PSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQL-NHPDTDIRKISA----WIL-GK 200 (402)
Q Consensus 127 ~~d~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL-~s~~~~Ir~~Aa----~vL-g~ 200 (402)
|+..+++...+....+... +..+..+++.+.-++........+.. -+..+..-+ ....+..+..+. |+. |-
T Consensus 185 ~~~~~ll~~l~~~~~~~~~-~~~~~~~~~~la~LvNK~~~~~~l~~--~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaL 261 (415)
T PF12460_consen 185 PDLEELLQSLLNLALSSED-EFSRLAALQLLASLVNKWPDDDDLDE--FLDSLLQSISSSEDSELRPQALEILIWITKAL 261 (415)
T ss_pred cCHHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHHcCCCChhhHHH--HHHHHHhhhcccCCcchhHHHHHHHHHHHHHH
Confidence 4445667777777665543 56677777777777765433222211 122222222 223333444443 333 44
Q ss_pred HhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh--------cHHHHHh----cCcHHHHHHhhc
Q 015709 201 ASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA--------GQEMFYV----EAGDLMLQDILG 268 (402)
Q Consensus 201 ~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~--------~~~~f~~----~gGi~~L~~lL~ 268 (402)
+..++|...+ .+..|+.++.+ +++...|.-+++-++.+.+. ..+.+++ .--++.|++..+
T Consensus 262 v~R~~~~~~~------~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~ 333 (415)
T PF12460_consen 262 VMRGHPLATE------LLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFK 333 (415)
T ss_pred HHcCCchHHH------HHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHh
Confidence 5566665544 46789999987 45556666666666665332 2222222 234566666666
Q ss_pred CCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHh--CCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCC
Q 015709 269 NSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD--RFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 338 (402)
Q Consensus 269 s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~--~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~ 338 (402)
..+ ...|..-..++++++.+ -| .+.+.. ..++|.|++.|..+|.+++..++.+|..++...
T Consensus 334 ~~~--~~~k~~yL~ALs~ll~~-----vP--~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 334 EAD--DEIKSNYLTALSHLLKN-----VP--KSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred hcC--hhhHHHHHHHHHHHHhh-----CC--HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 542 23677788888898853 12 112221 458899999999999999999999999999865
No 124
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=93.89 E-value=0.25 Score=47.52 Aligned_cols=53 Identities=17% Similarity=0.244 Sum_probs=42.2
Q ss_pred HHHHHhc-CCCCHHHHHHHHHHHHHHhcCChHhH-HHHHHcCcHHHHHHhhcCCC
Q 015709 177 SVLVGQL-NHPDTDIRKISAWILGKASQNNPLVQ-KQVLELGALSKLMKMVKSSF 229 (402)
Q Consensus 177 ~~Li~lL-~s~~~~Ir~~Aa~vLg~~aqNNp~~Q-~~~le~g~L~~Ll~LL~s~~ 229 (402)
..|+++| ...++-.|+.|.-+|.++++.....- ....+.+.|..|+..+.+..
T Consensus 175 ~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~~Li~FiE~a~ 229 (257)
T PF12031_consen 175 HTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCISHLIAFIEDAE 229 (257)
T ss_pred HHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHHHHHHHHHHHH
Confidence 3456666 45789999999999999999876654 55568899999999997644
No 125
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=93.86 E-value=1.1 Score=41.41 Aligned_cols=146 Identities=14% Similarity=0.083 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHhcC-ChHhH----HHHH------HcCcHHHHHH-hhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHh
Q 015709 189 DIRKISAWILGKASQN-NPLVQ----KQVL------ELGALSKLMK-MVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYV 256 (402)
Q Consensus 189 ~Ir~~Aa~vLg~~aqN-Np~~Q----~~~l------e~g~L~~Ll~-LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~ 256 (402)
.||..|..+|..++++ .++.= -.++ ..+.-+.|+. ++.+.++.+|..|+.+++.|+.+..+.....-+
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 3799999999999998 43211 0011 1123344444 445556889999999999999986553332222
Q ss_pred cC-------------------cHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhc
Q 015709 257 EA-------------------GDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA 317 (402)
Q Consensus 257 ~g-------------------Gi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~ 317 (402)
.. -...|...|+.++ +..+....+.++..|+..- ........+. ..++..+..++.
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~-~~~~l~q~lK~la~Lv~~t---PY~rL~~~ll-~~~v~~v~~~l~ 155 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEK-SPPVLTQLLKCLAVLVQAT---PYHRLPPGLL-TEVVTQVRPLLR 155 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHHHccC---ChhhcCHhHH-HHHHHHHHHHHh
Confidence 22 1245556666553 3446667777777777531 1111222121 123444455677
Q ss_pred CCChHHHHHHHHHHHHHhcCCh
Q 015709 318 SADLDLQEKALAAIKNLLQLRT 339 (402)
Q Consensus 318 ~~d~dv~E~aL~aL~~L~~~~~ 339 (402)
+.|++++..++.++..+++..+
T Consensus 156 ~~d~~v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 156 HRDPNVRVAALSCLGALLSVQP 177 (182)
T ss_pred cCCCcHHHHHHHHHHHHHcCCC
Confidence 8899999999999999987643
No 126
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=93.81 E-value=1 Score=39.15 Aligned_cols=74 Identities=16% Similarity=0.083 Sum_probs=60.2
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChH-hHHHHHHcCcHHHHHHhhcCC---CHHHHHHHHHHHHHHhcCCh
Q 015709 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPL-VQKQVLELGALSKLMKMVKSS---FVEEAVKALYTVSSLIRNNL 248 (402)
Q Consensus 175 gl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~-~Q~~~le~g~L~~Ll~LL~s~---~~~vr~kAl~ALS~LiR~~~ 248 (402)
++..|-.-|+++++.++..|..+|-.++.|... .+..+.....+..|++++... ++.++.|++..|-+-...++
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 345566677889999999999999999999865 888888878888899999863 46789998888877665544
No 127
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.69 E-value=2.6 Score=45.11 Aligned_cols=138 Identities=16% Similarity=0.167 Sum_probs=96.2
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHH
Q 015709 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFY 255 (402)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~ 255 (402)
+..+..+|.++..+-|..+..-|..+-.+.| .|-.+.....++.|++-|++.++++..+++.-+++++.+... .
T Consensus 338 i~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p-~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~-~---- 411 (675)
T KOG0212|consen 338 IEVLTKYLSDDREETRIAVLNWIILLYHKAP-GQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNS-P---- 411 (675)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHhhCc-chhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCccc-c----
Confidence 5667788999999999999999999887666 677777778999999999999999999999999999987432 1
Q ss_pred hcCcHHHHHHhhc---CCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcC-CChHHHHHHHHHH
Q 015709 256 VEAGDLMLQDILG---NSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS-ADLDLQEKALAAI 331 (402)
Q Consensus 256 ~~gGi~~L~~lL~---s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~-~d~dv~E~aL~aL 331 (402)
|-.+.+..+|. .+ ..-+..++.+.+..||.- .++ +.+-..+..+|.. +|.++-.....+|
T Consensus 412 --~~~~fl~sLL~~f~e~--~~~l~~Rg~lIIRqlC~l----L~a--------E~IYr~~a~ILe~e~nl~FAstMV~~L 475 (675)
T KOG0212|consen 412 --NLRKFLLSLLEMFKED--TKLLEVRGNLIIRQLCLL----LNA--------ERIYRSIADILEREENLKFASTMVQAL 475 (675)
T ss_pred --cHHHHHHHHHHHHhhh--hHHHHhhhhHHHHHHHHH----hCH--------HHHHHHHHHHHhccccchHHHHHHHHH
Confidence 22444455543 33 344788999999999852 121 2233344444433 3555555555555
Q ss_pred HHHh
Q 015709 332 KNLL 335 (402)
Q Consensus 332 ~~L~ 335 (402)
...+
T Consensus 476 n~iL 479 (675)
T KOG0212|consen 476 NTIL 479 (675)
T ss_pred Hhhh
Confidence 5433
No 128
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=93.69 E-value=0.82 Score=40.43 Aligned_cols=73 Identities=15% Similarity=0.153 Sum_probs=58.9
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC-hHhHHHHHHcCcHHHHHHhhcC------CCHHHHHHHHHHHHHHhcCC
Q 015709 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKS------SFVEEAVKALYTVSSLIRNN 247 (402)
Q Consensus 175 gl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNN-p~~Q~~~le~g~L~~Ll~LL~s------~~~~vr~kAl~ALS~LiR~~ 247 (402)
++..|..-|+++++.++..|..+|-++++|. +.++..|...+.+..|+++++. .+..|+.+.+.-|-.-...+
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 118 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLEL 118 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 4556777788999999999999999999997 5688889999999999999963 34678888877666544433
No 129
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.67 E-value=6.8 Score=39.28 Aligned_cols=236 Identities=17% Similarity=0.154 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHh
Q 015709 129 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLV 208 (402)
Q Consensus 129 d~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~ 208 (402)
+...||..++.+..... -..|...|-++.++-.-++.+... .+..++..+..+...+-...|.++.|+++....+
T Consensus 42 ~~~~lk~l~qL~~~~~~----~~~a~~alVnlsq~~~l~~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~ 116 (353)
T KOG2973|consen 42 SEALLKDLTQLLKDLDP----AEPAATALVNLSQKEELRKKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEV 116 (353)
T ss_pred hhhhHHHHHHHccCccc----ccHHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHH
Confidence 45566666666665432 223334444455555566666666 5666677777776667778899999999877666
Q ss_pred HHHHHHc-----CcHHHHHHhhcCCCHHH---HHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHH-
Q 015709 209 QKQVLEL-----GALSKLMKMVKSSFVEE---AVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRK- 279 (402)
Q Consensus 209 Q~~~le~-----g~L~~Ll~LL~s~~~~v---r~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~k- 279 (402)
....... .++..|+.-+...+-.. -.-...-++++.+ ++.++..|.... .-+...++.=+..+..+|+.
T Consensus 117 ~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~-~~~gR~l~~~~k-~~p~~kll~ft~~~s~vRr~G 194 (353)
T KOG2973|consen 117 AALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQ-FEAGRKLLLEPK-RFPDQKLLPFTSEDSQVRRGG 194 (353)
T ss_pred HHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHhh-hhhhhhHhcchh-hhhHhhhhcccccchhhhccc
Confidence 5555433 35566665554433221 1122333444443 455666665444 22222222211113334443
Q ss_pred HHHHHHHHhhcc-----cccCCCCcch----------hHHh---CCcHHHHHHhhc-----CCChHHHHHHHHHHHHHhc
Q 015709 280 AVSLVGDLAKCQ-----LENMHKVEPP----------LFRD---RFFLKSVVDLTA-----SADLDLQEKALAAIKNLLQ 336 (402)
Q Consensus 280 A~~lL~~L~~~~-----l~~~~~~~~~----------~l~~---~g~v~~Lv~lL~-----~~d~dv~E~aL~aL~~L~~ 336 (402)
.+..|.|.|+.. +-.......+ .+.+ .++...| +.|. .+|++++.+-+.||..|+.
T Consensus 195 vagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm~~LP~eL-QyLp~dKeRepdpdIrk~llEai~lLca 273 (353)
T KOG2973|consen 195 VAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEEDMAKLPVEL-QYLPEDKEREPDPDIRKMLLEALLLLCA 273 (353)
T ss_pred hHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHHHhcCCHhh-hcCCccccCCCChHHHHHHHHHHHHHHh
Confidence 445556655431 0000000000 1111 1222222 4443 3489999999999998887
Q ss_pred CChhhHHHHHhcCCcHHHHHHHHHHhHHhhhhhhHhhhHHHH
Q 015709 337 LRTTEALVLKDFCGLDTALERLRQQLQEVMLEEDQRDYAMDV 378 (402)
Q Consensus 337 ~~~~~~~~~~~~~GL~~~L~~L~~~~~~l~~~e~~~~y~~~l 378 (402)
.. .-|+.++ ..|..+.+..|+..- +++|-++-|+-+
T Consensus 274 T~-~GRe~lR-~kgvYpilRElhk~e----~ded~~~ace~v 309 (353)
T KOG2973|consen 274 TR-AGREVLR-SKGVYPILRELHKWE----EDEDIREACEQV 309 (353)
T ss_pred hh-HhHHHHH-hcCchHHHHHHhcCC----CcHHHHHHHHHH
Confidence 54 4678888 777777776663322 455556655543
No 130
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.63 E-value=7.5 Score=43.30 Aligned_cols=180 Identities=17% Similarity=0.102 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHccCCCCchhHHHhcCCH---------------HHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHH
Q 015709 148 EDSQRALQELLILVEPIDNANDLSKLGGL---------------SVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQV 212 (402)
Q Consensus 148 e~k~~AL~~L~~Lve~iDnA~~l~~lGgl---------------~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~ 212 (402)
.-++-|...|..++-+-||--..+.+.++ ..++.||+++++.||..|...+-.++..+- ++
T Consensus 309 ~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~N-v~--- 384 (866)
T KOG1062|consen 309 GLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNESN-VR--- 384 (866)
T ss_pred hHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcccc-HH---
Confidence 34555666666666555544333333333 356789999999999999999988884221 22
Q ss_pred HHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHh--------c------CcHHHHHHhhcCC--------
Q 015709 213 LELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYV--------E------AGDLMLQDILGNS-------- 270 (402)
Q Consensus 213 le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~--------~------gGi~~L~~lL~s~-------- 270 (402)
..+..|+..|.+.++..+....+-|.-++..|.|....|++ + ..+.-++.++.+.
T Consensus 385 ---~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~ 461 (866)
T KOG1062|consen 385 ---VMVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYA 461 (866)
T ss_pred ---HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHH
Confidence 23567888888877788888888888777777665444321 1 1333344443322
Q ss_pred ---------------CccHHHHHHHHHHHHH---HhhcccccCCCCcchhHHhCCcHHHHHHhhcCC--ChHHHHHHHHH
Q 015709 271 ---------------SFEIRLHRKAVSLVGD---LAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEKALAA 330 (402)
Q Consensus 271 ---------------~~d~klq~kA~~lL~~---L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~--d~dv~E~aL~a 330 (402)
-..+.+..-|.|+|.- |... ..+........+..++..+.+++.+. +..++-.++.|
T Consensus 462 ~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~---~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~A 538 (866)
T KOG1062|consen 462 VLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLD---GANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTA 538 (866)
T ss_pred HHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhc---CccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 1123345556666652 2211 11122222334556777777777654 56677777777
Q ss_pred HHHHhcC
Q 015709 331 IKNLLQL 337 (402)
Q Consensus 331 L~~L~~~ 337 (402)
|..|...
T Consensus 539 l~KLSsr 545 (866)
T KOG1062|consen 539 LLKLSSR 545 (866)
T ss_pred HHHHHhh
Confidence 7777543
No 131
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=93.63 E-value=0.94 Score=40.10 Aligned_cols=73 Identities=14% Similarity=0.149 Sum_probs=60.4
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC-hHhHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCC
Q 015709 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNN 247 (402)
Q Consensus 175 gl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNN-p~~Q~~~le~g~L~~Ll~LL~s-~~~~vr~kAl~ALS~LiR~~ 247 (402)
++..|..-|++.++.++..|..+|-.+++|. +..+..+...+.+..|+++++. .++.|+.|++..|-+-...+
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 116 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAF 116 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHh
Confidence 4556667788899999999999999999995 6688888899999999999985 34678888888877765443
No 132
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.33 E-value=12 Score=39.25 Aligned_cols=196 Identities=16% Similarity=0.109 Sum_probs=132.2
Q ss_pred HHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcC-----C----hHhHHHHHHcCcHHH
Q 015709 150 SQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQN-----N----PLVQKQVLELGALSK 220 (402)
Q Consensus 150 k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqN-----N----p~~Q~~~le~g~L~~ 220 (402)
....++.+--+....|---.|++++|++.|+.+|.|.|.+|-......+-.++-- + ...-++.++.++++.
T Consensus 101 Lhd~IQ~mhvlAt~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaL 180 (536)
T KOG2734|consen 101 LHDIIQEMHVLATMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLAL 180 (536)
T ss_pred HHHHHHHHHhhhcChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHH
Confidence 4456677777778888888999999999999999999999999988888877632 1 134456777899999
Q ss_pred HHHhhcCCCHHH------HHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCC-CccHHHHHHHHHHHHHHhhcccc
Q 015709 221 LMKMVKSSFVEE------AVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS-SFEIRLHRKAVSLVGDLAKCQLE 293 (402)
Q Consensus 221 Ll~LL~s~~~~v------r~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~-~~d~klq~kA~~lL~~L~~~~l~ 293 (402)
|++.+.-=+.++ ...++.-+-|++.-.+......++.|-+.-|..-+... ..+ .-+.-|.-.++-+...
T Consensus 181 LvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~-aNk~YasEiLaillq~--- 256 (536)
T KOG2734|consen 181 LVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFD-ANKQYASEILAILLQN--- 256 (536)
T ss_pred HHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcc-hhHHHHHHHHHHHhcc---
Confidence 999887433222 23455566677765666667777777666655533322 222 2455666666655532
Q ss_pred cCCCCcchhHHhCCcHHHHHHhhcC---------CChHHHHHHHHHHHHHhcCChhhHHHHHhcCCcH
Q 015709 294 NMHKVEPPLFRDRFFLKSVVDLTAS---------ADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLD 352 (402)
Q Consensus 294 ~~~~~~~~~l~~~g~v~~Lv~lL~~---------~d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~ 352 (402)
+ .+.+..+..-..+..++.-+.. +...+.|..-.+|++++..+. .+..|-..-|+.
T Consensus 257 -s-~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~-nr~~Fl~~EGlq 321 (536)
T KOG2734|consen 257 -S-DENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPA-NRERFLKGEGLQ 321 (536)
T ss_pred -C-chhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChh-hhhhhhccccHH
Confidence 2 2355556666677777665531 134678889999999988764 566676555643
No 133
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=93.30 E-value=1.2 Score=38.85 Aligned_cols=72 Identities=15% Similarity=0.205 Sum_probs=58.6
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCC-hHhHHHHHHcCcHHHHHHhhcCCC--HHHHHHHHHHHHHHhcCC
Q 015709 176 LSVLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKSSF--VEEAVKALYTVSSLIRNN 247 (402)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNN-p~~Q~~~le~g~L~~Ll~LL~s~~--~~vr~kAl~ALS~LiR~~ 247 (402)
+..|..-|++++|.++..|..++-.+++|. +.++..+...+.+..|..++++.. +.|+.|++..+.+-...+
T Consensus 39 ~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f 113 (133)
T smart00288 39 VRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAF 113 (133)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 344666778999999999999999999995 668888888899999999998765 338888888887765543
No 134
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=93.23 E-value=0.98 Score=37.39 Aligned_cols=93 Identities=13% Similarity=0.004 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCC
Q 015709 191 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS 270 (402)
Q Consensus 191 r~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~ 270 (402)
|..+...|+.++...++.-...++ -.+|+++..+.+.+..+|..|+.||.++++......-. .-...+..|..++.++
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~-~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~-~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLD-EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILP-YFNEIFDALCKLSADP 80 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCC
Confidence 455666677666655544333332 47899999999999999999999999998875442221 1246788888888876
Q ss_pred CccHHHHHHHHHHHHHHh
Q 015709 271 SFEIRLHRKAVSLVGDLA 288 (402)
Q Consensus 271 ~~d~klq~kA~~lL~~L~ 288 (402)
++.+|. ++.++-.|.
T Consensus 81 --d~~Vr~-~a~~Ld~ll 95 (97)
T PF12755_consen 81 --DENVRS-AAELLDRLL 95 (97)
T ss_pred --chhHHH-HHHHHHHHh
Confidence 565654 556665554
No 135
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=93.22 E-value=0.36 Score=43.68 Aligned_cols=91 Identities=23% Similarity=0.291 Sum_probs=68.0
Q ss_pred HHHHHHHcc--CCCCchhHHHhcCCHHHHHHhcCC---------CCHHHHHHHHHHHHHHhcCChHhHHHHHH-cCcHHH
Q 015709 153 ALQELLILV--EPIDNANDLSKLGGLSVLVGQLNH---------PDTDIRKISAWILGKASQNNPLVQKQVLE-LGALSK 220 (402)
Q Consensus 153 AL~~L~~Lv--e~iDnA~~l~~lGgl~~Li~lL~s---------~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le-~g~L~~ 220 (402)
.|..|+-.+ .+++....|+..||+..|+.+|.. .+..+...+..|+-++. |++.-.+.++. .+++..
T Consensus 84 ~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~-n~~~G~~~v~~~~~~v~~ 162 (187)
T PF06371_consen 84 ILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM-NTKYGLEAVLSHPDSVNL 162 (187)
T ss_dssp HHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT-SSHHHHHHHHCSSSHHHH
T ss_pred HHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH-ccHHHHHHHHcCcHHHHH
Confidence 344444433 456788999999999999988752 34578899999998888 56665666665 589999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHh
Q 015709 221 LMKMVKSSFVEEAVKALYTVSSLI 244 (402)
Q Consensus 221 Ll~LL~s~~~~vr~kAl~ALS~Li 244 (402)
|+..|.+.+..+|.-|+.-|+.+|
T Consensus 163 i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 163 IALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHH
Confidence 999999988999999988888775
No 136
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=92.86 E-value=0.77 Score=40.29 Aligned_cols=72 Identities=19% Similarity=0.239 Sum_probs=57.9
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC-hHhHHHHHHcCcHHHHHHhhcCCC-HH---HHHHHHHHHHHHhcC
Q 015709 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKSSF-VE---EAVKALYTVSSLIRN 246 (402)
Q Consensus 175 gl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNN-p~~Q~~~le~g~L~~Ll~LL~s~~-~~---vr~kAl~ALS~LiR~ 246 (402)
++..|-.-|.+++|.++..|..++-.+++|. +..+..+.....+..|.+++.+.. .. |+.+++--|..-...
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~ 119 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEA 119 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHH
Confidence 3455677788999999999999999999997 678888888889999999988654 33 788887766654433
No 137
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=92.66 E-value=1.1 Score=39.74 Aligned_cols=74 Identities=16% Similarity=0.159 Sum_probs=60.9
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh-HhHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCh
Q 015709 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNP-LVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNL 248 (402)
Q Consensus 175 gl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp-~~Q~~~le~g~L~~Ll~LL~s-~~~~vr~kAl~ALS~LiR~~~ 248 (402)
++..|..=|.+.++.++..|..+|-++++|.. ..+..|.....+..|+++++. .+..|+.+.+.-|-.....++
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~ 113 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFK 113 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhC
Confidence 34556666788999999999999999999976 488888888999999999998 567889988888877655543
No 138
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.50 E-value=5.3 Score=46.10 Aligned_cols=209 Identities=16% Similarity=0.135 Sum_probs=121.1
Q ss_pred HHhHHHHHHHHHHcCCCCHH----HHHHHHHHHhhcCC--CCHHHHHHHHHHHHHccCCCCch-hHHHhcCCHHHHHHhc
Q 015709 111 KKRQMEIKELMEKLKTPSDA----QLIQIAIDDLNNST--LSLEDSQRALQELLILVEPIDNA-NDLSKLGGLSVLVGQL 183 (402)
Q Consensus 111 ~~r~~~L~ea~~~l~~~~d~----~lMk~al~~L~~~~--~t~e~k~~AL~~L~~Lve~iDnA-~~l~~lGgl~~Li~lL 183 (402)
+|+++.|.+++.. |+-. +.+..+.+.+.++- .+.-.+...+..|..+++-.++= .+|+. ..++-+|=++
T Consensus 672 kK~yrlL~~l~~~---~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~-k~I~EvIL~~ 747 (1176)
T KOG1248|consen 672 KKAYRLLEELSSS---PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP-KLIPEVILSL 747 (1176)
T ss_pred HHHHHHHHHHhcC---CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH-HHHHHHHHhc
Confidence 3578888888864 3322 22222223222211 12235666677777777655511 12222 2344444444
Q ss_pred CCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcC------cHHHHHHhhcCC----CHHHHHHHHHHHHHHhcCChhcHHH
Q 015709 184 NHPDTDIRKISAWILGKASQNNPLVQKQVLELG------ALSKLMKMVKSS----FVEEAVKALYTVSSLIRNNLAGQEM 253 (402)
Q Consensus 184 ~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g------~L~~Ll~LL~s~----~~~vr~kAl~ALS~LiR~~~~~~~~ 253 (402)
+..+..-|..|..||-.++. -+.+.+.| .|...+.+++.. ++-++...+.|++.+...+......
T Consensus 748 Ke~n~~aR~~Af~lL~~i~~-----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~ 822 (1176)
T KOG1248|consen 748 KEVNVKARRNAFALLVFIGA-----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDD 822 (1176)
T ss_pred ccccHHHHhhHHHHHHHHHH-----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccH
Confidence 78889999999999988882 11122222 455555555543 3333444488999988776654444
Q ss_pred HHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHH
Q 015709 254 FYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKN 333 (402)
Q Consensus 254 f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~ 333 (402)
-.-.+-++.+...|.+. ...++.-|+.++.-++.. .|...-.....-+++.+..++......++-++-..|..
T Consensus 823 ~~l~~li~~V~~~L~s~--sreI~kaAI~fikvlv~~-----~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~Llek 895 (1176)
T KOG1248|consen 823 ETLEKLISMVCLYLASN--SREIAKAAIGFIKVLVYK-----FPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEK 895 (1176)
T ss_pred HHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHc-----CCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 44456677777778776 567888899999888752 33322222223367777777666667777777766666
Q ss_pred Hh
Q 015709 334 LL 335 (402)
Q Consensus 334 L~ 335 (402)
|.
T Consensus 896 Li 897 (1176)
T KOG1248|consen 896 LI 897 (1176)
T ss_pred HH
Confidence 54
No 139
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=92.44 E-value=2.2 Score=42.97 Aligned_cols=169 Identities=15% Similarity=0.151 Sum_probs=102.0
Q ss_pred CCCchhHHHhc-CCHHHHHHhcCC-CCHHHHHHHHHHHHHHhcCChH-hHHHHHHcCcHHHHHHhhcCCC---HHHHH--
Q 015709 163 PIDNANDLSKL-GGLSVLVGQLNH-PDTDIRKISAWILGKASQNNPL-VQKQVLELGALSKLMKMVKSSF---VEEAV-- 234 (402)
Q Consensus 163 ~iDnA~~l~~l-Ggl~~Li~lL~s-~~~~Ir~~Aa~vLg~~aqNNp~-~Q~~~le~g~L~~Ll~LL~s~~---~~vr~-- 234 (402)
+...|.++.++ ..+..|+++.+. ....|-...+.++.+++...|+ .-...+-.|-+.+-++.|.... ++++.
T Consensus 223 ~~~~aqdi~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di 302 (432)
T COG5231 223 SKECAQDIDKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDI 302 (432)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHH
Confidence 44455555554 345556666654 3466777788888888864432 1222222344455566665421 22211
Q ss_pred -----------HHHHHH--------HHHhcCChh---------cHHHHHhc--CcHHHHHHhhcCCCccHHHHHHHHHHH
Q 015709 235 -----------KALYTV--------SSLIRNNLA---------GQEMFYVE--AGDLMLQDILGNSSFEIRLHRKAVSLV 284 (402)
Q Consensus 235 -----------kAl~AL--------S~LiR~~~~---------~~~~f~~~--gGi~~L~~lL~s~~~d~klq~kA~~lL 284 (402)
|-+... |.+..-+|+ +.+.|.+- ..+..|.+++++...+.-+ .-|+.=|
T Consensus 303 ~~i~s~l~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i-~vAc~Di 381 (432)
T COG5231 303 ERIRSRLVQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWI-CVACSDI 381 (432)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceE-eeeHhhH
Confidence 111111 111111222 56666653 4678888888876444322 3356666
Q ss_pred HHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcC
Q 015709 285 GDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 337 (402)
Q Consensus 285 ~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~ 337 (402)
..+.+ ..|+.+..+...|+=..+.++++++|++++=.|+.|+..+.+.
T Consensus 382 ~~~Vr-----~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~~ 429 (432)
T COG5231 382 FQLVR-----ASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCISS 429 (432)
T ss_pred HHHHH-----hCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHhh
Confidence 66664 3688899999999999999999999999999999999988753
No 140
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=92.39 E-value=1.1 Score=47.09 Aligned_cols=122 Identities=16% Similarity=0.118 Sum_probs=88.4
Q ss_pred HHHHhcCChhcHHHHHhcCcHHHHHHhh--------cCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHH
Q 015709 240 VSSLIRNNLAGQEMFYVEAGDLMLQDIL--------GNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKS 311 (402)
Q Consensus 240 LS~LiR~~~~~~~~f~~~gGi~~L~~lL--------~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~ 311 (402)
|=-+.|+ +.+.+.++...|+..|...- .....+..+.+.|+.+|+|++.. ++..+..+.+.|+.+.
T Consensus 5 LRiLsRd-~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~-----s~~aR~~~~~~~~~~~ 78 (446)
T PF10165_consen 5 LRILSRD-PTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFL-----SPSARQIFVDLGLAEK 78 (446)
T ss_pred HHHHccC-cccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhC-----CHHHHHHHHHcCcHHH
Confidence 3334453 44555566666666666654 11224678999999999999974 6788899999999999
Q ss_pred HHHhhcCC-----ChHHHHHHHHHHHHHhcCChhhHHHHHhc-CCcHHHHHHHHHHhHHhhh
Q 015709 312 VVDLTASA-----DLDLQEKALAAIKNLLQLRTTEALVLKDF-CGLDTALERLRQQLQEVML 367 (402)
Q Consensus 312 Lv~lL~~~-----d~dv~E~aL~aL~~L~~~~~~~~~~~~~~-~GL~~~L~~L~~~~~~l~~ 367 (402)
+++.|+.. +.++.=-.++.|.-+.....+.+..+.+. +|++.....|..++.....
T Consensus 79 l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~ 140 (446)
T PF10165_consen 79 LCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSK 140 (446)
T ss_pred HHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccc
Confidence 99999876 67888888888887777666677666555 6677777778777776543
No 141
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=92.37 E-value=3.3 Score=46.62 Aligned_cols=171 Identities=15% Similarity=0.207 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHccCCCCchhHHHh--cCCHHHHHHhc-CCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHh
Q 015709 148 EDSQRALQELLILVEPIDNANDLSK--LGGLSVLVGQL-NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 224 (402)
Q Consensus 148 e~k~~AL~~L~~Lve~iDnA~~l~~--lGgl~~Li~lL-~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~L 224 (402)
.+|..|++.+-..+++-- ....+ .|-+-.++... ...|..+...|+.+|.-++......=..+ -.+.+|.|++-
T Consensus 268 K~R~Eale~l~~~l~e~~--~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~-~~~v~p~lld~ 344 (815)
T KOG1820|consen 268 KDRKEALEELVAILEEAK--KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKY-AKNVFPSLLDR 344 (815)
T ss_pred HHHHHHHHHHHHHHhccc--cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHH-HHhhcchHHHH
Confidence 578888888877766433 11111 23344445443 66889999999999999998766542222 23678999998
Q ss_pred hcCCCHHHH---HHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcch
Q 015709 225 VKSSFVEEA---VKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPP 301 (402)
Q Consensus 225 L~s~~~~vr---~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~ 301 (402)
+......++ .+++-++++.+ +. ..-.+.+...++++ +++++..+..++...... .++....
T Consensus 345 lkekk~~l~d~l~~~~d~~~ns~---~l-------~~~~~~I~e~lk~k--np~~k~~~~~~l~r~~~~----~~~~~~~ 408 (815)
T KOG1820|consen 345 LKEKKSELRDALLKALDAILNST---PL-------SKMSEAILEALKGK--NPQIKGECLLLLDRKLRK----LGPKTVE 408 (815)
T ss_pred hhhccHHHHHHHHHHHHHHHhcc---cH-------HHHHHHHHHHhcCC--ChhhHHHHHHHHHHHHhh----cCCcCcc
Confidence 887665554 56666666622 11 12345667778876 677888877776665542 2333333
Q ss_pred hHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcC
Q 015709 302 LFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 337 (402)
Q Consensus 302 ~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~ 337 (402)
.-.-.++++.++.+.+..+.++|..++.++..+...
T Consensus 409 ~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~ 444 (815)
T KOG1820|consen 409 KETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKV 444 (815)
T ss_pred hhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHH
Confidence 334467888888888888999999999999988754
No 142
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.14 E-value=3 Score=45.76 Aligned_cols=89 Identities=12% Similarity=0.216 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHhcCChhcH------------------HHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhccc
Q 015709 231 EEAVKALYTVSSLIRNNLAGQ------------------EMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQL 292 (402)
Q Consensus 231 ~vr~kAl~ALS~LiR~~~~~~------------------~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l 292 (402)
+.-.+|+-+|+.++.+.+.+. +++..+ .+.++..|+.. .|+.+|+||+-+|+.+|.
T Consensus 325 ~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkte-rDvSirrravDLLY~mcD--- 398 (938)
T KOG1077|consen 325 ELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTE-RDVSIRRRAVDLLYAMCD--- 398 (938)
T ss_pred HHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccc-cchHHHHHHHHHHHHHhc---
Confidence 344566666666666555433 233233 56777888855 378899999999999994
Q ss_pred ccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHH
Q 015709 293 ENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNL 334 (402)
Q Consensus 293 ~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L 334 (402)
.+....+ |..+.+-|.+-|..+||....=+.-|
T Consensus 399 ----~~Nak~I-----V~elLqYL~tAd~sireeivlKvAIL 431 (938)
T KOG1077|consen 399 ----VSNAKQI-----VAELLQYLETADYSIREEIVLKVAIL 431 (938)
T ss_pred ----hhhHHHH-----HHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 2333332 33344444555666665554433333
No 143
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.89 E-value=2.6 Score=45.20 Aligned_cols=141 Identities=17% Similarity=0.143 Sum_probs=98.5
Q ss_pred CHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCH-HHHHHHHHHHHHHhcC--ChHhHHHHHHcC-cHHHH
Q 015709 146 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDT-DIRKISAWILGKASQN--NPLVQKQVLELG-ALSKL 221 (402)
Q Consensus 146 t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~-~Ir~~Aa~vLg~~aqN--Np~~Q~~~le~g-~L~~L 221 (402)
.++-+..|+-=+.++|.-.-+.--..-.|-+..++.++.++.+ .++..|..+-+.+..- .+...+. ++.| .+..|
T Consensus 263 ~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl 341 (675)
T KOG0212|consen 263 EPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE-IDYGSIIEVL 341 (675)
T ss_pred cHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccc-cchHHHHHHH
Confidence 3456677888888877755555555556778888888877666 5888777765443321 1222211 3333 47788
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015709 222 MKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (402)
Q Consensus 222 l~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~ 290 (402)
.+.++++..+.|..++-=|.-+-+.+|. +-..........|..-|.+++ .-+..+++++++++|..
T Consensus 342 ~~~l~~~~~~tri~~L~Wi~~l~~~~p~-ql~~h~~~if~tLL~tLsd~s--d~vvl~~L~lla~i~~s 407 (675)
T KOG0212|consen 342 TKYLSDDREETRIAVLNWIILLYHKAPG-QLLVHNDSIFLTLLKTLSDRS--DEVVLLALSLLASICSS 407 (675)
T ss_pred HHHhhcchHHHHHHHHHHHHHHHhhCcc-hhhhhccHHHHHHHHhhcCch--hHHHHHHHHHHHHHhcC
Confidence 8899988899999999999988776654 444445678888888888763 34788999999999964
No 144
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=91.82 E-value=4.6 Score=43.26 Aligned_cols=158 Identities=16% Similarity=0.148 Sum_probs=110.2
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCC----CHHHHHHHHHHHHHHh
Q 015709 127 PSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHP----DTDIRKISAWILGKAS 202 (402)
Q Consensus 127 ~~d~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~----~~~Ir~~Aa~vLg~~a 202 (402)
.++....+++++++.++. ...+..|+..|..+.-+...|..|.++.|+..|.+++.+. +.++..........+-
T Consensus 79 ~sp~~~a~~i~e~l~~~~--~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elm 156 (713)
T KOG2999|consen 79 ASPSHYAKRIMEILTEGN--NISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELM 156 (713)
T ss_pred cCchHHHHHHHHHHhCCC--cHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHH
Confidence 355678899999998874 4667779999999999999999999999999999999764 3456655555554443
Q ss_pred cCChHhHHHHHHcCcHHHHHHhhcCC--CHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHH
Q 015709 203 QNNPLVQKQVLELGALSKLMKMVKSS--FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKA 280 (402)
Q Consensus 203 qNNp~~Q~~~le~g~L~~Ll~LL~s~--~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA 280 (402)
..--.+.+.+ ...++.....+.+-. +..+-..|+.-+-+++-+.+.-.+.+.+.--++-|+..++.. +.+++..|
T Consensus 157 ehgvvsW~~~-~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~--n~~i~~~a 233 (713)
T KOG2999|consen 157 EHGVVSWESV-SNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVS--NQRIQTCA 233 (713)
T ss_pred hhceeeeeec-ccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhc--chHHHHHH
Confidence 2211111110 112233344444221 223456777777788887777777777888888888888864 67899999
Q ss_pred HHHHHHHhh
Q 015709 281 VSLVGDLAK 289 (402)
Q Consensus 281 ~~lL~~L~~ 289 (402)
..++..|..
T Consensus 234 ial~nal~~ 242 (713)
T KOG2999|consen 234 IALLNALFR 242 (713)
T ss_pred HHHHHHHHh
Confidence 999999875
No 145
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=91.79 E-value=0.74 Score=41.31 Aligned_cols=147 Identities=13% Similarity=0.152 Sum_probs=95.9
Q ss_pred HHHHHHhcC--CCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHH
Q 015709 176 LSVLVGQLN--HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEM 253 (402)
Q Consensus 176 l~~Li~lL~--s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~ 253 (402)
+..++..|. ...+++|..|.-+++.+- +..++.+.+. .-..+-.++.....+-...++.+++.+.-..|.....
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~~~-~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~ 80 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFKEK-ISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSE 80 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHHHH-HHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHHHH-HHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHH
Confidence 445666664 478899999999999984 4444444332 2223333443322345788999999998887766555
Q ss_pred HH-hcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCC-ChH-HHHHHHHH
Q 015709 254 FY-VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLD-LQEKALAA 330 (402)
Q Consensus 254 f~-~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~d-v~E~aL~a 330 (402)
++ ..|-.+.+...+.....+..++..++.+|..=|. +...+..+. ..+++.|-++++.+ |.. ++..|+.+
T Consensus 81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~------d~~~r~~I~-~~~~~~L~~~~~~~~~~~~ir~~A~v~ 153 (157)
T PF11701_consen 81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI------DKSCRTFIS-KNYVSWLKELYKNSKDDSEIRVLAAVG 153 (157)
T ss_dssp HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT------SHHHHHCCH-HHCHHHHHHHTTTCC-HH-CHHHHHHH
T ss_pred HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc------cHHHHHHHH-HHHHHHHHHHHccccchHHHHHHHHHH
Confidence 54 5677788888888333478899999999987663 444454444 45688999999644 454 67777766
Q ss_pred HHH
Q 015709 331 IKN 333 (402)
Q Consensus 331 L~~ 333 (402)
|..
T Consensus 154 L~K 156 (157)
T PF11701_consen 154 LCK 156 (157)
T ss_dssp HHH
T ss_pred Hhc
Confidence 654
No 146
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=91.67 E-value=15 Score=38.71 Aligned_cols=189 Identities=16% Similarity=0.119 Sum_probs=113.4
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHH-ccCCCCchhHHHhcCCHHHHHHhcCC-CCHHHHHHHHHHHHHHhcCChH
Q 015709 130 AQLIQIAIDDLNNSTLSLEDSQRALQELLI-LVEPIDNANDLSKLGGLSVLVGQLNH-PDTDIRKISAWILGKASQNNPL 207 (402)
Q Consensus 130 ~~lMk~al~~L~~~~~t~e~k~~AL~~L~~-Lve~iDnA~~l~~lGgl~~Li~lL~s-~~~~Ir~~Aa~vLg~~aqNNp~ 207 (402)
..+++..+.-+.+.+ ..+.+..|+.+|.. ++++--.-.+=+....+..++..|.. .++.++..|.++|+.++.|-|.
T Consensus 285 ~~~v~~~l~~~~g~e-~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~ 363 (516)
T KOG2956|consen 285 SALVADLLKEISGSE-RASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA 363 (516)
T ss_pred hHHHHHHHHhccCcc-chhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchH
Confidence 467888888888774 45778888887765 44553333331122234566777754 8899999999999999987553
Q ss_pred hHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q 015709 208 VQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDL 287 (402)
Q Consensus 208 ~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L 287 (402)
--..-.+ =++.++++--.+..+++-.-|.-+.+.++..+.|-+. +..+..++.+. |...-.-++..++-|
T Consensus 364 ~l~DstE-~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~-------I~~i~~~Ilt~--D~~~~~~~iKm~Tkl 433 (516)
T KOG2956|consen 364 RLFDSTE-IAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQC-------IVNISPLILTA--DEPRAVAVIKMLTKL 433 (516)
T ss_pred hhhchHH-HHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhH-------HHHHhhHHhcC--cchHHHHHHHHHHHH
Confidence 2211111 2567777777776666655555554444433333222 22344444442 222333344455555
Q ss_pred hhcccccCCCCcchhHH--hCCcHHHHHHhhcCCChHHHHHHHHHHHHHhc
Q 015709 288 AKCQLENMHKVEPPLFR--DRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 336 (402)
Q Consensus 288 ~~~~l~~~~~~~~~~l~--~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~ 336 (402)
+.. -..+.+. =..+.|.+++--.+....+|..|.-+|..+..
T Consensus 434 ~e~-------l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 434 FER-------LSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred Hhh-------cCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence 531 1112221 14677888888888899999999998888864
No 147
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=91.54 E-value=2.2 Score=41.65 Aligned_cols=158 Identities=16% Similarity=0.109 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHhhcC---CCCH---HHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCC-----CHHHHHHHHHH
Q 015709 129 DAQLIQIAIDDLNNS---TLSL---EDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHP-----DTDIRKISAWI 197 (402)
Q Consensus 129 d~~lMk~al~~L~~~---~~t~---e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~-----~~~Ir~~Aa~v 197 (402)
-+.+.++.+.+...- ..+. ..-..||.-|.-...+.|....|.+..-.--|..+|+.. .+-+|-.+..|
T Consensus 40 i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGV 119 (262)
T PF04078_consen 40 IAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGV 119 (262)
T ss_dssp HHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHH
Confidence 346677777766432 2233 234577777777778899999999998777777777542 47799999999
Q ss_pred HHHHhcC-ChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhc-------HHHHHh-cCcHHHHHHhhc
Q 015709 198 LGKASQN-NPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG-------QEMFYV-EAGDLMLQDILG 268 (402)
Q Consensus 198 Lg~~aqN-Np~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~-------~~~f~~-~gGi~~L~~lL~ 268 (402)
||.++++ ++++-..+++...+|..++.+..++.-.+.-|.+-+.-++-+. .+ .+.|.. ...+..++.-+.
T Consensus 120 IgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL~dd-~GL~yiC~t~eRf~av~~vL~~mV~~l~ 198 (262)
T PF04078_consen 120 IGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKILLDD-VGLNYICQTAERFFAVAMVLNKMVEQLV 198 (262)
T ss_dssp HHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHHHSH-HHHHHHTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHcch-hHHHHHhcCHHHHHHHHHHHHHHHHHHc
Confidence 9999984 5678888889999999999999887777888999888877653 22 233432 233344443333
Q ss_pred CCCccHHHHHHHHHHHHHHh
Q 015709 269 NSSFEIRLHRKAVSLVGDLA 288 (402)
Q Consensus 269 s~~~d~klq~kA~~lL~~L~ 288 (402)
.. .++|+-+..+.....|+
T Consensus 199 ~~-pS~RLLKhIIrCYlRLs 217 (262)
T PF04078_consen 199 KQ-PSPRLLKHIIRCYLRLS 217 (262)
T ss_dssp HS---HHHHHHHHHHHHHHT
T ss_pred cC-CChhHHHHHHHHHHHHc
Confidence 22 25677777777766665
No 148
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=91.49 E-value=15 Score=35.91 Aligned_cols=190 Identities=17% Similarity=0.140 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHccCC-CCchhHHHh-cCCHHHHHHhc-------C----CCCHHHHHHHHHHHHHHhcCChHhHHHHHH
Q 015709 148 EDSQRALQELLILVEP-IDNANDLSK-LGGLSVLVGQL-------N----HPDTDIRKISAWILGKASQNNPLVQKQVLE 214 (402)
Q Consensus 148 e~k~~AL~~L~~Lve~-iDnA~~l~~-lGgl~~Li~lL-------~----s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le 214 (402)
+.++.||.+|..--+. .|.|-.+-. .|-...|++-. . ++...-|..-+-+|-.++..+|+.+..|++
T Consensus 39 p~rE~aL~ELskkre~~~dlA~~lW~s~g~~~~LLqEivaiYp~l~p~~l~~~qsnRVcnaL~LlQcvASHpdTr~~FL~ 118 (293)
T KOG3036|consen 39 PTREMALLELSKKREPFPDLAPMLWHSFGTMVALLQEIVAIYPSLSPPTLTPAQSNRVCNALALLQCVASHPDTRRAFLR 118 (293)
T ss_pred chHHHHHHHHHHhccCCccccHHHHHhcchHHHHHHHHHhcccccCCCCCCccccchHHHHHHHHHHHhcCcchHHHHHH
Confidence 5577888888886665 467765444 45555554322 1 123445655555566666678999999999
Q ss_pred cCcHHHHHHhhcCC---C--HHHHHHHHHHHHHHhcCChhcHHHHH-hcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHh
Q 015709 215 LGALSKLMKMVKSS---F--VEEAVKALYTVSSLIRNNLAGQEMFY-VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLA 288 (402)
Q Consensus 215 ~g~L~~Ll~LL~s~---~--~~vr~kAl~ALS~LiR~~~~~~~~f~-~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~ 288 (402)
...--.|-.+|+.. . +-.|..++.-|++++.+.....-.|. ..+.++..+.++..+ +.-.|.-|.|.+.-+.
T Consensus 119 A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~G--SelSKtvA~fIlqKIl 196 (293)
T KOG3036|consen 119 AHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESG--SELSKTVATFILQKIL 196 (293)
T ss_pred ccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcc--cHHHHHHHHHHHHHHh
Confidence 86433333444432 2 34699999999999999766666664 578999999999886 3446777888887766
Q ss_pred hcccccCCCCcc-------hhHHh-CCcHHHHH-HhhcCCChHHHHHHHHHHHHHhcCChhhHHHHH
Q 015709 289 KCQLENMHKVEP-------PLFRD-RFFLKSVV-DLTASADLDLQEKALAAIKNLLQLRTTEALVLK 346 (402)
Q Consensus 289 ~~~l~~~~~~~~-------~~l~~-~g~v~~Lv-~lL~~~d~dv~E~aL~aL~~L~~~~~~~~~~~~ 346 (402)
.. ..-. +.|.- .-++..++ ++.+.++..+..+++++...|...+. .|..++
T Consensus 197 ld------D~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnpr-ar~aL~ 256 (293)
T KOG3036|consen 197 LD------DVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPR-ARAALR 256 (293)
T ss_pred hc------cccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHH-HHHHHH
Confidence 32 1111 11111 12333333 34556799999999999999987753 555554
No 149
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=91.14 E-value=5.2 Score=43.69 Aligned_cols=141 Identities=18% Similarity=0.147 Sum_probs=83.5
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhc----CCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHH
Q 015709 136 AIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKL----GGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ 211 (402)
Q Consensus 136 al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~l----Ggl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~ 211 (402)
++.++-+ .+++-+-.|||.|..++-+.-....|++. ..+..++..++ .++..+..+++||.|+..| |..++.
T Consensus 549 ~l~~l~~--wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~ 624 (745)
T KOG0301|consen 549 ALAILLQ--WPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGREL 624 (745)
T ss_pred HHHHHhc--CCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHH
Confidence 4444433 24567888999999999776655566552 23445555555 5688889999999999976 888888
Q ss_pred HHHcCcHHHHHHhhcC----CCHHHH-HHHHHH--HHH-HhcCChhcHHHHHhcCcHHHHHHhhcC---CCccHHHHHHH
Q 015709 212 VLELGALSKLMKMVKS----SFVEEA-VKALYT--VSS-LIRNNLAGQEMFYVEAGDLMLQDILGN---SSFEIRLHRKA 280 (402)
Q Consensus 212 ~le~g~L~~Ll~LL~s----~~~~vr-~kAl~A--LS~-LiR~~~~~~~~f~~~gGi~~L~~lL~s---~~~d~klq~kA 280 (402)
+... +..++.-+.. ++..++ +-|..| .|- ++..+. +.+|.+.|..++.. +..|....-+.
T Consensus 625 ~~s~--~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~-------~~~~~~~l~~ai~~~~e~~~d~EA~yR~ 695 (745)
T KOG0301|consen 625 FMSR--LESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNE-------QLEGKEVLLSAISTLLEPVDDLEAIYRL 695 (745)
T ss_pred HHHH--HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhccc-------ccchHHHHHHHHHhhcccchhHHHHHHH
Confidence 8765 3333333221 122221 111111 221 222222 25777777776542 22344456677
Q ss_pred HHHHHHHhh
Q 015709 281 VSLVGDLAK 289 (402)
Q Consensus 281 ~~lL~~L~~ 289 (402)
+.+|.+|+.
T Consensus 696 l~AlgtL~t 704 (745)
T KOG0301|consen 696 LVALGTLMT 704 (745)
T ss_pred HHHHHhhcc
Confidence 888888875
No 150
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=91.02 E-value=16 Score=35.59 Aligned_cols=200 Identities=17% Similarity=0.130 Sum_probs=124.1
Q ss_pred ChHHHHHHHhhcCCCccccchhh---ccCCCCHHHHHHhHHHHHHHHHHcCCCCHHHHHHHHHHHhh---cCCCCH---H
Q 015709 78 SIDGMLQWAIGHSDPAKLKETAQ---DVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLN---NSTLSL---E 148 (402)
Q Consensus 78 ~~~gLLkwsi~~sd~~~~~~~~~---~~~~~s~e~l~~r~~~L~ea~~~l~~~~d~~lMk~al~~L~---~~~~t~---e 148 (402)
+-+++-+|.++-+.|++...+-. +.+...++ + =-.++..++. ...+..+.+.+.- -+..++ .
T Consensus 24 ~~dk~~~~i~~l~~~p~rE~aL~ELskkre~~~d-l------A~~lW~s~g~--~~~LLqEivaiYp~l~p~~l~~~qsn 94 (293)
T KOG3036|consen 24 NNDKAYQLILSLVSPPTREMALLELSKKREPFPD-L------APMLWHSFGT--MVALLQEIVAIYPSLSPPTLTPAQSN 94 (293)
T ss_pred cccchhhHHHHhhCCchHHHHHHHHHHhccCCcc-c------cHHHHHhcch--HHHHHHHHHhcccccCCCCCCccccc
Confidence 35568999999777766311100 00111111 0 0134455543 3456666666542 222222 2
Q ss_pred HHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcC-----CCCHHHHHHHHHHHHHHhcCCh-HhHHHHHHcCcHHHHH
Q 015709 149 DSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLN-----HPDTDIRKISAWILGKASQNNP-LVQKQVLELGALSKLM 222 (402)
Q Consensus 149 ~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~-----s~~~~Ir~~Aa~vLg~~aqNNp-~~Q~~~le~g~L~~Ll 222 (402)
.-.+||--|+-.+...|....|.+..-=--|-.+|+ .+.+-+|-.|.-|||.+++|.+ ++-...+..+.+|..+
T Consensus 95 RVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCL 174 (293)
T KOG3036|consen 95 RVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCL 174 (293)
T ss_pred hHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHH
Confidence 346788878778888999999998765444455553 3678899999999999999865 3555566789999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhcCChh------cHHHHHhcC-cHH-HHHHhhcCCCccHHHHHHHHHHHHHHh
Q 015709 223 KMVKSSFVEEAVKALYTVSSLIRNNLA------GQEMFYVEA-GDL-MLQDILGNSSFEIRLHRKAVSLVGDLA 288 (402)
Q Consensus 223 ~LL~s~~~~vr~kAl~ALS~LiR~~~~------~~~~f~~~g-Gi~-~L~~lL~s~~~d~klq~kA~~lL~~L~ 288 (402)
+.+..+++.-+.-|.+-+.-++-+... ..+.|...+ -+. ++.++.+.+ +.++-..++.+...|+
T Consensus 175 rime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~p--s~RllKhviRcYlrLs 246 (293)
T KOG3036|consen 175 RIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMP--SPRLLKHVIRCYLRLS 246 (293)
T ss_pred HHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHhc
Confidence 999998887788888888877655322 133343222 122 222333333 5677777777777775
No 151
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=90.60 E-value=5.4 Score=42.97 Aligned_cols=146 Identities=14% Similarity=0.118 Sum_probs=101.0
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHH
Q 015709 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF 254 (402)
Q Consensus 175 gl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f 254 (402)
-+..++.-+..+.+.+|.....|+....-.-..-+. .-.++.+.+++++.+...+.+|.|++..+++++. ...+
T Consensus 97 ~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~----~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~--i~~~ 170 (569)
T KOG1242|consen 97 IIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSG----EYVLELLLELLTSTKIAERAGAAYGLAGLVNGLG--IESL 170 (569)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCH----HHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcH--Hhhh
Confidence 456677788889999999999998887743211111 1357888899998778889999999999998854 5677
Q ss_pred HhcCcHHHHHHhhcCCCccHHHHHH-HHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhc---CCChHHHHHHHHH
Q 015709 255 YVEAGDLMLQDILGNSSFEIRLHRK-AVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA---SADLDLQEKALAA 330 (402)
Q Consensus 255 ~~~gGi~~L~~lL~s~~~d~klq~k-A~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~---~~d~dv~E~aL~a 330 (402)
.+.+-+..|....++.+ ...++. +.++....+.. ..+. .+..+++.+..+|. .....+|+.|..+
T Consensus 171 ~~~~~l~~l~~ai~dk~--~~~~re~~~~a~~~~~~~----Lg~~-----~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a 239 (569)
T KOG1242|consen 171 KEFGFLDNLSKAIIDKK--SALNREAALLAFEAAQGN----LGPP-----FEPYIVPILPSILTNFGDKINKVREAAVEA 239 (569)
T ss_pred hhhhHHHHHHHHhcccc--hhhcHHHHHHHHHHHHHh----cCCC-----CCchHHhhHHHHHHHhhccchhhhHHHHHH
Confidence 78888888999888763 334444 44444444432 2222 34455555555554 4578899988888
Q ss_pred HHHHhcC
Q 015709 331 IKNLLQL 337 (402)
Q Consensus 331 L~~L~~~ 337 (402)
+..+...
T Consensus 240 ~kai~~~ 246 (569)
T KOG1242|consen 240 AKAIMRC 246 (569)
T ss_pred HHHHHHh
Confidence 8887654
No 152
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=90.54 E-value=3.1 Score=44.87 Aligned_cols=98 Identities=16% Similarity=0.202 Sum_probs=55.2
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHh
Q 015709 177 SVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYV 256 (402)
Q Consensus 177 ~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~ 256 (402)
..++.+....+..||..|..-|..+|.+||+.-..+ ...|++||.++++.....+=.+|.++.+.+|.+.-.
T Consensus 62 ~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv-----aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL~--- 133 (556)
T PF05918_consen 62 NAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV-----ADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGTLT--- 133 (556)
T ss_dssp HHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH-----HHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHHHH---
T ss_pred HHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH-----HHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHHHH---
Confidence 344444445568999999999999999988655444 467999999988776766777777777776643211
Q ss_pred cCcHHHHHHhhcCCCccHHHHHHHHHHHHH
Q 015709 257 EAGDLMLQDILGNSSFEIRLHRKAVSLVGD 286 (402)
Q Consensus 257 ~gGi~~L~~lL~s~~~d~klq~kA~~lL~~ 286 (402)
.++.+++.++..+..+|.+++.+|..
T Consensus 134 ----~lf~~i~~~~~~de~~Re~~lkFl~~ 159 (556)
T PF05918_consen 134 ----GLFSQIESSKSGDEQVRERALKFLRE 159 (556)
T ss_dssp ----HHHHHHH---HS-HHHHHHHHHHHHH
T ss_pred ----HHHHHHHhcccCchHHHHHHHHHHHH
Confidence 11233332222355678888766653
No 153
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=90.17 E-value=3.3 Score=36.57 Aligned_cols=91 Identities=12% Similarity=0.138 Sum_probs=68.1
Q ss_pred HHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHH
Q 015709 234 VKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVV 313 (402)
Q Consensus 234 ~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv 313 (402)
-..+-.|+-+++..+.+.. .++..|..-|+++ ++.++..|+.++-.++. +....+...+.+.+++..++
T Consensus 19 w~~ileicD~In~~~~~~k-----~a~rai~krl~~~--n~~v~l~AL~LLe~~vk----NCG~~fh~evas~~Fl~el~ 87 (139)
T cd03567 19 WEAIQAFCEQINKEPEGPQ-----LAVRLLAHKIQSP--QEKEALQALTVLEACMK----NCGERFHSEVGKFRFLNELI 87 (139)
T ss_pred HHHHHHHHHHHHcCCccHH-----HHHHHHHHHHcCC--CHHHHHHHHHHHHHHHH----HcCHHHHHHHHhHHHHHHHH
Confidence 3455566666665543322 3566777778876 67899999999998886 35667777888899999999
Q ss_pred HhhcC------CChHHHHHHHHHHHHHh
Q 015709 314 DLTAS------ADLDLQEKALAAIKNLL 335 (402)
Q Consensus 314 ~lL~~------~d~dv~E~aL~aL~~L~ 335 (402)
.++.. .+..|+++++..+..-.
T Consensus 88 kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 88 KLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 99963 47899999998887765
No 154
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.16 E-value=12 Score=41.68 Aligned_cols=155 Identities=17% Similarity=0.150 Sum_probs=93.8
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHhhcCCCCHH---------------HHHHHHHHHHHccCCCCc-hhHHHhcCCH-HHH
Q 015709 117 IKELMEKLKTPSDAQLIQIAIDDLNNSTLSLE---------------DSQRALQELLILVEPIDN-ANDLSKLGGL-SVL 179 (402)
Q Consensus 117 L~ea~~~l~~~~d~~lMk~al~~L~~~~~t~e---------------~k~~AL~~L~~Lve~iDn-A~~l~~lGgl-~~L 179 (402)
+++.+++=....-.+.||+.+..+-|.+.-+. .....|--.-++|...++ ...++.|=.+ ..+
T Consensus 25 ik~~Lek~~~~~KIeamK~ii~~mlnGe~~p~Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~~EMILvcna~ 104 (948)
T KOG1058|consen 25 IKEKLEKGDDEVKIEAMKKIIALMLNGEDLPSLLMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLLHEMILVCNAY 104 (948)
T ss_pred HHHHHhcCChHHHHHHHHHHHHHHHcCCCchHHHHHHhheeeccCchHHHHHHHHHHHHccccCCCcccHHHHHHHHHHH
Confidence 45666631112234678998888877764321 223344455556666654 4555554221 223
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCc
Q 015709 180 VGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG 259 (402)
Q Consensus 180 i~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gG 259 (402)
-+-|+|||+=||-...+-|.++= .|+.- ...+|.+.+.|.+...-||+.|+.||.++-+++.. .=-.+
T Consensus 105 RkDLQHPNEyiRG~TLRFLckLk--E~ELl-----epl~p~IracleHrhsYVRrNAilaifsIyk~~~~-----L~pDa 172 (948)
T KOG1058|consen 105 RKDLQHPNEYIRGSTLRFLCKLK--EPELL-----EPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEH-----LIPDA 172 (948)
T ss_pred hhhccCchHhhcchhhhhhhhcC--cHHHh-----hhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhh-----hcCCh
Confidence 35678899999988888888774 33322 24578888889888888999999999988776321 12345
Q ss_pred HHHHHHhhcCCCccHHHHHHHHHHH
Q 015709 260 DLMLQDILGNSSFEIRLHRKAVSLV 284 (402)
Q Consensus 260 i~~L~~lL~s~~~d~klq~kA~~lL 284 (402)
-+++-+.|... .|+..+++|.-.|
T Consensus 173 peLi~~fL~~e-~DpsCkRNAFi~L 196 (948)
T KOG1058|consen 173 PELIESFLLTE-QDPSCKRNAFLML 196 (948)
T ss_pred HHHHHHHHHhc-cCchhHHHHHHHH
Confidence 55555655544 2445566654433
No 155
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=90.14 E-value=3.6 Score=47.22 Aligned_cols=141 Identities=10% Similarity=0.013 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHHHhcCChHhHHHHHH----cCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHH
Q 015709 188 TDIRKISAWILGKASQNNPLVQKQVLE----LGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLM 262 (402)
Q Consensus 188 ~~Ir~~Aa~vLg~~aqNNp~~Q~~~le----~g~L~~Ll~LL~s~~-~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~ 262 (402)
.+=...+..+|.|+...||.....|-. .|.++.+..++.... +.++.-|+--++-+ ..|.++...+...|.+..
T Consensus 1739 ~~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~-Tan~~Cv~~~a~~~vL~~ 1817 (2235)
T KOG1789|consen 1739 ETKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLA-TANKECVTDLATCNVLTT 1817 (2235)
T ss_pred HHHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHH-hcccHHHHHHHhhhHHHH
Confidence 344567899999999999966655532 277888888887654 56777788877755 457888999999999999
Q ss_pred HHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCC-ChHHHHHHHHHHHHHhcCC
Q 015709 263 LQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKALAAIKNLLQLR 338 (402)
Q Consensus 263 L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~dv~E~aL~aL~~L~~~~ 338 (402)
|..+|.|- +..|..++-.++.|+. ++.......++|.+..+.+++... ++..+-+++..+..|..+.
T Consensus 1818 LL~lLHS~---PS~R~~vL~vLYAL~S------~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adk 1885 (2235)
T KOG1789|consen 1818 LLTLLHSQ---PSMRARVLDVLYALSS------NGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADK 1885 (2235)
T ss_pred HHHHHhcC---hHHHHHHHHHHHHHhc------CcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhcc
Confidence 99999874 5689999999999974 456666777899999998888765 6677888888888887653
No 156
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.06 E-value=26 Score=37.18 Aligned_cols=120 Identities=18% Similarity=0.245 Sum_probs=72.4
Q ss_pred hHHHhcCCHHHHHHhc----CCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHH-HhhcCCCHHHHHHHHHHHHH
Q 015709 168 NDLSKLGGLSVLVGQL----NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLM-KMVKSSFVEEAVKALYTVSS 242 (402)
Q Consensus 168 ~~l~~lGgl~~Li~lL----~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll-~LL~s~~~~vr~kAl~ALS~ 242 (402)
+.+-+.|.+.-++..| .+|+..+|..|+++||+.+..-|.--..-. .-.+..++ .|....+.+|.-.|+.+|-.
T Consensus 248 ~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~-~~~ldaii~gL~D~~~~~V~leam~~Lt~ 326 (533)
T KOG2032|consen 248 KELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHK-TTQLDAIIRGLYDDLNEEVQLEAMKCLTM 326 (533)
T ss_pred ccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhH-HHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 3344777777665544 458899999999999999998553221111 12233344 34444456776666655555
Q ss_pred HhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015709 243 LIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (402)
Q Consensus 243 LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~ 290 (402)
++..-..-.-.++=.+..--+..++.+. +.++|..|.+++..|+.-
T Consensus 327 v~~~~~~~~l~~~~l~ialrlR~l~~se--~~~~R~aa~~Lfg~L~~l 372 (533)
T KOG2032|consen 327 VLEKASNDDLESYLLNIALRLRTLFDSE--DDKMRAAAFVLFGALAKL 372 (533)
T ss_pred HHHhhhhcchhhhchhHHHHHHHHHHhc--ChhhhhhHHHHHHHHHHH
Confidence 4432111112223334555667777775 567899999999999753
No 157
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.00 E-value=3.3 Score=45.78 Aligned_cols=29 Identities=14% Similarity=0.197 Sum_probs=25.8
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcC
Q 015709 176 LSVLVGQLNHPDTDIRKISAWILGKASQN 204 (402)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~vLg~~aqN 204 (402)
+|.+.++|+|.++=||.+|.-+|.++-+|
T Consensus 136 ~p~IracleHrhsYVRrNAilaifsIyk~ 164 (948)
T KOG1058|consen 136 MPSIRACLEHRHSYVRRNAILAIFSIYKN 164 (948)
T ss_pred HHHHHHHHhCcchhhhhhhheeehhHHhh
Confidence 55556799999999999999999999988
No 158
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.64 E-value=8.5 Score=42.92 Aligned_cols=159 Identities=13% Similarity=0.146 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcC
Q 015709 148 EDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS 227 (402)
Q Consensus 148 e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s 227 (402)
-.|..|+..+..++-.-+++.++ +|.+++...+.+.+||...---|-.-|.++|... . =-|..+=+-|++
T Consensus 50 ~~KleAmKRIia~iA~G~dvS~~-----Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLA--L---LSIntfQk~L~D 119 (968)
T KOG1060|consen 50 SLKLEAMKRIIALIAKGKDVSLL-----FPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLA--L---LSINTFQKALKD 119 (968)
T ss_pred HHHHHHHHHHHHHHhcCCcHHHH-----HHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCce--e---eeHHHHHhhhcC
Confidence 46777877777766655555443 5666777777777777666555555555544211 0 124555566778
Q ss_pred CCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCC
Q 015709 228 SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRF 307 (402)
Q Consensus 228 ~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g 307 (402)
+++-+|..|+.++|+| |- +...-+ .+-.+.++..++ .+.+|+.|+.+|--|-. .+++....+
T Consensus 120 pN~LiRasALRvlSsI-Rv--p~IaPI----~llAIk~~~~D~--s~yVRk~AA~AIpKLYs-----Ld~e~k~qL---- 181 (968)
T KOG1060|consen 120 PNQLIRASALRVLSSI-RV--PMIAPI----MLLAIKKAVTDP--SPYVRKTAAHAIPKLYS-----LDPEQKDQL---- 181 (968)
T ss_pred CcHHHHHHHHHHHHhc-ch--hhHHHH----HHHHHHHHhcCC--cHHHHHHHHHhhHHHhc-----CChhhHHHH----
Confidence 8889999999999987 42 111111 122344555554 68899999999998863 355544433
Q ss_pred cHHHHHHhhcCCChHHHHHHHHHHHHHh
Q 015709 308 FLKSVVDLTASADLDLQEKALAAIKNLL 335 (402)
Q Consensus 308 ~v~~Lv~lL~~~d~dv~E~aL~aL~~L~ 335 (402)
+..+-.||...++-|.-.|+.|...++
T Consensus 182 -~e~I~~LLaD~splVvgsAv~AF~evC 208 (968)
T KOG1060|consen 182 -EEVIKKLLADRSPLVVGSAVMAFEEVC 208 (968)
T ss_pred -HHHHHHHhcCCCCcchhHHHHHHHHhc
Confidence 345555666667777777777666554
No 159
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.41 E-value=2.1 Score=42.79 Aligned_cols=113 Identities=16% Similarity=0.119 Sum_probs=84.1
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHH--hcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccC
Q 015709 218 LSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFY--VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM 295 (402)
Q Consensus 218 L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~--~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~ 295 (402)
+..|+.++.+.++.+|..|+--+.+++.. + .+.|. +.--++.|.+++... ++ ...|++++.|++.
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~-~~~~~~~~~~~lk~l~qL~~~~--~~--~~~a~~alVnlsq------ 71 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR--G-LQSLSKYSEALLKDLTQLLKDL--DP--AEPAATALVNLSQ------ 71 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc--c-hhhhccchhhhHHHHHHHccCc--cc--ccHHHHHHHHHHh------
Confidence 45688999999999999999999988765 2 22332 234566677777754 22 5679999999974
Q ss_pred CCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChhhHHH
Q 015709 296 HKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALV 344 (402)
Q Consensus 296 ~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~~~~ 344 (402)
++..+..+.+. +++.++..+..+....-+-....|.+|++....++..
T Consensus 72 ~~~l~~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~l 119 (353)
T KOG2973|consen 72 KEELRKKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAAL 119 (353)
T ss_pred hHHHHHHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHH
Confidence 45677777766 8999999998887778888888889999887655543
No 160
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=89.16 E-value=14 Score=44.06 Aligned_cols=146 Identities=12% Similarity=0.150 Sum_probs=99.0
Q ss_pred CCHHHHHHHHHHHhhcCCC---------CHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHH
Q 015709 127 PSDAQLIQIAIDDLNNSTL---------SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWI 197 (402)
Q Consensus 127 ~~d~~lMk~al~~L~~~~~---------t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~v 197 (402)
+.....||-.+..+...+. +.-+.-.|.....++...-...+.|-. -+..++..|..+.+.+|..|..|
T Consensus 762 ~~~~n~~K~~~~~Ik~~~~~~~~~~~~s~~~d~~~a~li~~~la~~r~f~~sfD~--yLk~Il~~l~e~~ialRtkAlKc 839 (1692)
T KOG1020|consen 762 ITVENELKYILSKIKDKEKSGRGPKLNSRFADDDDAKLIVFYLAHARSFSQSFDP--YLKLILSVLGENAIALRTKALKC 839 (1692)
T ss_pred hhhHHHHHHHHHHhcchhhhccCcCCCCccccchhHHHHHHHHHhhhHHHHhhHH--HHHHHHHHhcCchHHHHHHHHHH
Confidence 3444566766666655420 111233445555555555555555443 36677888999999999999999
Q ss_pred HHHHhcCC------hHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCC
Q 015709 198 LGKASQNN------PLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSS 271 (402)
Q Consensus 198 Lg~~aqNN------p~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~ 271 (402)
|+.++.-. |.+|..|. .-+.+.+..||..|+--+|.-+-.++.-..++++ .+..-+.++
T Consensus 840 lS~ive~Dp~vL~~~dvq~~Vh---------~R~~DssasVREAaldLvGrfvl~~~e~~~qyY~-----~i~erIlDt- 904 (1692)
T KOG1020|consen 840 LSMIVEADPSVLSRPDVQEAVH---------GRLNDSSASVREAALDLVGRFVLSIPELIFQYYD-----QIIERILDT- 904 (1692)
T ss_pred HHHHHhcChHhhcCHHHHHHHH---------HhhccchhHHHHHHHHHHhhhhhccHHHHHHHHH-----HHHhhcCCC-
Confidence 99999764 45555443 2344567889999999999988888887777763 344444444
Q ss_pred ccHHHHHHHHHHHHHHhhc
Q 015709 272 FEIRLHRKAVSLVGDLAKC 290 (402)
Q Consensus 272 ~d~klq~kA~~lL~~L~~~ 290 (402)
.+.+|.++...+.++|.+
T Consensus 905 -gvsVRKRvIKIlrdic~e 922 (1692)
T KOG1020|consen 905 -GVSVRKRVIKILRDICEE 922 (1692)
T ss_pred -chhHHHHHHHHHHHHHHh
Confidence 467899999999999964
No 161
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=89.10 E-value=0.96 Score=42.13 Aligned_cols=96 Identities=16% Similarity=0.203 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhh
Q 015709 188 TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDIL 267 (402)
Q Consensus 188 ~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL 267 (402)
..+-..+..+|...+++|+++|..+.++ ++.++..+.......-.-+...+.++.++|+.....+.+.. +..++.++
T Consensus 75 ~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~~~~~~~~~~d~l~~i~~dN~~L~~~i~e~~-I~~~i~ll 151 (207)
T PF01365_consen 75 KELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQLQIGYGLGALDVLTEIFRDNPELCESISEEH-IEKFIELL 151 (207)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCCCH-TTHHHHHHHHHHHTT---------------------
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHhhccCCchHHHHHHHHHHCcHHHHHHhhHHH-HHHHHHHH
Confidence 4677899999999999999999999876 45444444333333334567778889999999888887665 88888888
Q ss_pred cCCCccHHHHHHHHHHHHHHhhc
Q 015709 268 GNSSFEIRLHRKAVSLVGDLAKC 290 (402)
Q Consensus 268 ~s~~~d~klq~kA~~lL~~L~~~ 290 (402)
...+ -+.+-+.+++.||..
T Consensus 152 ~~~g----r~~~~L~~L~~lc~~ 170 (207)
T PF01365_consen 152 RKHG----RQPRYLDFLSSLCVC 170 (207)
T ss_dssp -----------------------
T ss_pred HHcC----CChHHHHHHhhhccc
Confidence 8642 234567778888753
No 162
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.83 E-value=0.65 Score=50.37 Aligned_cols=75 Identities=17% Similarity=0.235 Sum_probs=64.4
Q ss_pred hhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 015709 167 ANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRN 246 (402)
Q Consensus 167 A~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~ 246 (402)
+..++..|+--.++.-|...--+||..|...++.++++.|..-.. ++..|+++++++-..+|.+|+++|-.+..|
T Consensus 366 ~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfNDE~~~VRL~ai~aL~~Is~~ 440 (823)
T KOG2259|consen 366 EESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFNDEIEVVRLKAIFALTMISVH 440 (823)
T ss_pred ccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 446777788888888888888999999999999999999987664 567899999988788999999999887765
No 163
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=88.79 E-value=1.4 Score=46.50 Aligned_cols=106 Identities=17% Similarity=0.155 Sum_probs=68.6
Q ss_pred CCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHh----cCChh---cHHHHHh
Q 015709 184 NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLI----RNNLA---GQEMFYV 256 (402)
Q Consensus 184 ~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~Li----R~~~~---~~~~f~~ 256 (402)
.|.+.-++..|.+.++..+=..---++...-.++...++..+.+..-..|.|+.|++|++. -+-|. .+..|..
T Consensus 401 d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg 480 (728)
T KOG4535|consen 401 DSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG 480 (728)
T ss_pred chHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH
Confidence 4455667888888888877654444454445567777777777666678999999999854 34444 3344432
Q ss_pred cCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015709 257 EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (402)
Q Consensus 257 ~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~ 289 (402)
.--...+.....++....|++.+|...+.++..
T Consensus 481 ~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQ 513 (728)
T KOG4535|consen 481 LLLLKMLRSAIEASADKDKVKSNAVRALGNLLQ 513 (728)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHH
Confidence 222223333333444567899999999999874
No 164
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=88.60 E-value=2 Score=35.26 Aligned_cols=72 Identities=15% Similarity=0.136 Sum_probs=56.2
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh
Q 015709 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA 249 (402)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~ 249 (402)
+...+..|+++.+.||.++...|+.+...+. ....-..+.+..++..++++++-+--.|+-+++.++.-+|.
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 3456778899999999999999999998776 11112235677888888888888888888889988877765
No 165
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=87.75 E-value=3.1 Score=37.31 Aligned_cols=100 Identities=18% Similarity=0.108 Sum_probs=74.4
Q ss_pred hcCCCCHHHHHHHHHHHHHHhcCChHhHHHHH-HcCcHHHHHHhhc--CCCHHHHHHHHHHHHHHhcCChhcHHHHHhcC
Q 015709 182 QLNHPDTDIRKISAWILGKASQNNPLVQKQVL-ELGALSKLMKMVK--SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA 258 (402)
Q Consensus 182 lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~l-e~g~L~~Ll~LL~--s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~g 258 (402)
++..++.+-...+..+++.+-+--|.+-..++ ..|.++.++.+.. +.+..+...++-+|+.-+-+ .....|+..+
T Consensus 51 ~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d--~~~r~~I~~~ 128 (157)
T PF11701_consen 51 LLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID--KSCRTFISKN 128 (157)
T ss_dssp HHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS--HHHHHCCHHH
T ss_pred HHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc--HHHHHHHHHH
Confidence 34444444667899999999999998777766 6688999999999 66678889999999987643 4456677789
Q ss_pred cHHHHHHhhcCCCccHH-HHHHHHHHH
Q 015709 259 GDLMLQDILGNSSFEIR-LHRKAVSLV 284 (402)
Q Consensus 259 Gi~~L~~lL~s~~~d~k-lq~kA~~lL 284 (402)
|++.|..+++... +.+ +|..|+-.|
T Consensus 129 ~~~~L~~~~~~~~-~~~~ir~~A~v~L 154 (157)
T PF11701_consen 129 YVSWLKELYKNSK-DDSEIRVLAAVGL 154 (157)
T ss_dssp CHHHHHHHTTTCC--HH-CHHHHHHHH
T ss_pred HHHHHHHHHcccc-chHHHHHHHHHHH
Confidence 9999999997543 444 666665544
No 166
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=87.67 E-value=0.74 Score=46.17 Aligned_cols=81 Identities=15% Similarity=0.130 Sum_probs=67.7
Q ss_pred CchhHHHhc--CCHHHHHHhcCCCCHH-HHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHH
Q 015709 165 DNANDLSKL--GGLSVLVGQLNHPDTD-IRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVS 241 (402)
Q Consensus 165 DnA~~l~~l--Ggl~~Li~lL~s~~~~-Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS 241 (402)
+|+..|.+- .-+..|..+|++.++. .-+-||.=|+..+.--|+....+.++|+=..++.+++++++.++-.|+.|+-
T Consensus 345 ~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q 424 (432)
T COG5231 345 TNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQ 424 (432)
T ss_pred hhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHH
Confidence 455555553 3577888999887766 6678999999999999999999999999999999999999999998888887
Q ss_pred HHhc
Q 015709 242 SLIR 245 (402)
Q Consensus 242 ~LiR 245 (402)
.++.
T Consensus 425 ~~i~ 428 (432)
T COG5231 425 TCIS 428 (432)
T ss_pred HHHh
Confidence 6653
No 167
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=87.35 E-value=17 Score=39.14 Aligned_cols=168 Identities=13% Similarity=0.096 Sum_probs=94.0
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCC----CCHHHHHHHHHHHHHHhc----C
Q 015709 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH----PDTDIRKISAWILGKASQ----N 204 (402)
Q Consensus 133 Mk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s----~~~~Ir~~Aa~vLg~~aq----N 204 (402)
++-+.+.+.+...+..+...++-.+...+...+ ...+..+..++++ +++-++..|.-.+|+++. +
T Consensus 359 ~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~Pt-------~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~ 431 (574)
T smart00638 359 LKFIKQWIKNKKITPLEAAQLLAVLPHTARYPT-------EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVN 431 (574)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcCC-------HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcC
Confidence 333444555566665555555555555543222 1123445556654 356788888888877664 3
Q ss_pred ChHhHHHHHHcCcHHHHHHhhcC----CCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhc-CCCccHHHHHH
Q 015709 205 NPLVQKQVLELGALSKLMKMVKS----SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILG-NSSFEIRLHRK 279 (402)
Q Consensus 205 Np~~Q~~~le~g~L~~Ll~LL~s----~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~-s~~~d~klq~k 279 (402)
++.+...+ -...++.|...|.. .+...+.-++-||+|+ +++.... .|...+. +...+..+|.-
T Consensus 432 ~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~--g~~~~i~---------~l~~~l~~~~~~~~~iR~~ 499 (574)
T smart00638 432 TPSCPDFV-LEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA--GHPSSIK---------VLEPYLEGAEPLSTFIRLA 499 (574)
T ss_pred CCCCChhh-HHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc--CChhHHH---------HHHHhcCCCCCCCHHHHHH
Confidence 43333222 22356777766653 2334466788899987 4554433 3344443 33346789999
Q ss_pred HHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcC--CChHHHHHHHHHHH
Q 015709 280 AVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS--ADLDLQEKALAAIK 332 (402)
Q Consensus 280 A~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~--~d~dv~E~aL~aL~ 332 (402)
|++++..++.. .+. .+-+.+..+..+ .++++|-.|..+|.
T Consensus 500 Av~Alr~~a~~-----~p~--------~v~~~l~~i~~n~~e~~EvRiaA~~~lm 541 (574)
T smart00638 500 AILALRNLAKR-----DPR--------KVQEVLLPIYLNRAEPPEVRMAAVLVLM 541 (574)
T ss_pred HHHHHHHHHHh-----Cch--------HHHHHHHHHHcCCCCChHHHHHHHHHHH
Confidence 99999988742 222 122334444443 37888888775443
No 168
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=87.32 E-value=5.4 Score=34.62 Aligned_cols=92 Identities=20% Similarity=0.165 Sum_probs=69.8
Q ss_pred HHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHH
Q 015709 234 VKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVV 313 (402)
Q Consensus 234 ~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv 313 (402)
-..+..|+-+++..+.+.. .++..|..-|+++ ++.++..|+.++-.++.+ ..+.+...+.+..++..++
T Consensus 18 ~~~il~icd~I~~~~~~~k-----~a~raL~krl~~~--n~~vql~AL~lLd~~vkN----cg~~f~~~i~s~~fl~~l~ 86 (133)
T cd03561 18 WALNLELCDLINLKPNGPK-----EAARAIRKKIKYG--NPHVQLLALTLLELLVKN----CGKPFHLQVADKEFLLELV 86 (133)
T ss_pred HHHHHHHHHHHhCCCCCHH-----HHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHh----CChHHHHHHhhHHHHHHHH
Confidence 4566778888887644333 2556777778876 678999999999988863 4555667777778888899
Q ss_pred HhhcC---CChHHHHHHHHHHHHHhc
Q 015709 314 DLTAS---ADLDLQEKALAAIKNLLQ 336 (402)
Q Consensus 314 ~lL~~---~d~dv~E~aL~aL~~L~~ 336 (402)
.++.. .+..++++++..+.....
T Consensus 87 ~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 87 KIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 99975 488999999998887764
No 169
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.29 E-value=43 Score=39.08 Aligned_cols=107 Identities=15% Similarity=0.144 Sum_probs=78.8
Q ss_pred HHHHhc-CCCCHHHHHHHHHHHHHHhcCChHhHHHHHHc--CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHH
Q 015709 178 VLVGQL-NHPDTDIRKISAWILGKASQNNPLVQKQVLEL--GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF 254 (402)
Q Consensus 178 ~Li~lL-~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~--g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f 254 (402)
.+.... ++.++.+|..+-.+|..+.+. |.++..+... .....|.+-+++.+...+..++.+|+.+++.++.--..|
T Consensus 657 ~v~~~~e~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~ 735 (1176)
T KOG1248|consen 657 TVDPEFENSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDL 735 (1176)
T ss_pred HhhHHhhccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHH
Confidence 445544 667999999999999999987 5555544432 234555666666667789999999999999888545556
Q ss_pred HhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHh
Q 015709 255 YVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLA 288 (402)
Q Consensus 255 ~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~ 288 (402)
+.....++|+.. +.. +.+.|+.|..+|..++
T Consensus 736 i~k~I~EvIL~~-Ke~--n~~aR~~Af~lL~~i~ 766 (1176)
T KOG1248|consen 736 IPKLIPEVILSL-KEV--NVKARRNAFALLVFIG 766 (1176)
T ss_pred HHHHHHHHHHhc-ccc--cHHHHhhHHHHHHHHH
Confidence 666666666665 543 7788999999999988
No 170
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=87.14 E-value=11 Score=40.57 Aligned_cols=156 Identities=12% Similarity=0.130 Sum_probs=110.8
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCH----HHHHHHHHHHHHHhcCChhcHHH
Q 015709 178 VLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFV----EEAVKALYTVSSLIRNNLAGQEM 253 (402)
Q Consensus 178 ~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~----~vr~kAl~ALS~LiR~~~~~~~~ 253 (402)
.+...+.+++..-|..|..-+..+.. .+..-..|+...++..|.+++.++.. .+..-.+.|.|.+..|.--..+.
T Consensus 87 ~i~e~l~~~~~~~~~~a~k~l~sls~-d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~~ 165 (713)
T KOG2999|consen 87 RIMEILTEGNNISKMEALKELDSLSL-DPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWES 165 (713)
T ss_pred HHHHHHhCCCcHHHHHHHHHHhhccc-cHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeeee
Confidence 45567788888888888888988886 46677889999999999999998753 45677888899887764433322
Q ss_pred HHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHH
Q 015709 254 FYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKN 333 (402)
Q Consensus 254 f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~ 333 (402)
+- ..++.-...+.+-+..+..+-..|+..+.++.. .+......+.++--+..|+.+|...|..++.+|+..+.+
T Consensus 166 ~~-~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl-----~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~na 239 (713)
T KOG2999|consen 166 VS-NDFVVSMASYVNAKREDANTLLAALQMLESLVL-----GSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNA 239 (713)
T ss_pred cc-cHHHHHHHHHHhhhhhcccchHHHHHHHHHHHh-----CChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 21 223333333333222233455567777777774 245567778888999999999999999999999888888
Q ss_pred HhcCChh
Q 015709 334 LLQLRTT 340 (402)
Q Consensus 334 L~~~~~~ 340 (402)
+....++
T Consensus 240 l~~~a~~ 246 (713)
T KOG2999|consen 240 LFRKAPD 246 (713)
T ss_pred HHhhCCh
Confidence 7765443
No 171
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.03 E-value=6.6 Score=43.34 Aligned_cols=178 Identities=19% Similarity=0.206 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCC
Q 015709 149 DSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS 228 (402)
Q Consensus 149 ~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~ 228 (402)
+--.||.-|..++. .|-|+|+. +-++.+|+|+-|=+|..|.-++-.+.---|+.-. -.+|+|..-|.++
T Consensus 125 e~giAL~GLS~fvT-pdLARDLa-----~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr-----~~FprL~EkLeDp 193 (877)
T KOG1059|consen 125 EVGLALSGLSCIVT-PDLARDLA-----DDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALR-----PCFPRLVEKLEDP 193 (877)
T ss_pred hhhheecccccccC-chhhHHHH-----HHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHh-----hhHHHHHHhccCC
Confidence 34457777776555 67888876 4578899999999999999999888765554322 4689999999999
Q ss_pred CHHHHHHHHHHHHHHhcCChhcHHH----HHh-----cCcHH--HHHHhhcC-CCccHHHHHHHHHHHHHHhhcccc-cC
Q 015709 229 FVEEAVKALYTVSSLIRNNLAGQEM----FYV-----EAGDL--MLQDILGN-SSFEIRLHRKAVSLVGDLAKCQLE-NM 295 (402)
Q Consensus 229 ~~~vr~kAl~ALS~LiR~~~~~~~~----f~~-----~gGi~--~L~~lL~s-~~~d~klq~kA~~lL~~L~~~~l~-~~ 295 (402)
++.|...|+.-|+-+.|.||.+.-. |++ .|-|= .|+.++.. ....+|+..|-+-=|++|...--. .-
T Consensus 194 Dp~V~SAAV~VICELArKnPknyL~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSL 273 (877)
T KOG1059|consen 194 DPSVVSAAVSVICELARKNPQNYLQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSL 273 (877)
T ss_pred CchHHHHHHHHHHHHHhhCCcccccccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHH
Confidence 9999999999999999999886433 332 12221 11222221 114667777776666666532100 00
Q ss_pred CCCcchhHH----hCC----------cHHHHHHhhcCCChHHHHHHHHHHHHHhcC
Q 015709 296 HKVEPPLFR----DRF----------FLKSVVDLTASADLDLQEKALAAIKNLLQL 337 (402)
Q Consensus 296 ~~~~~~~l~----~~g----------~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~ 337 (402)
--+....++ ..| +++.|-.++...|++++=-.+.|+..++.-
T Consensus 274 lYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~kt 329 (877)
T KOG1059|consen 274 LYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKT 329 (877)
T ss_pred HHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhh
Confidence 000001111 112 344555566677888888888888777754
No 172
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=86.94 E-value=14 Score=37.00 Aligned_cols=146 Identities=16% Similarity=0.076 Sum_probs=86.9
Q ss_pred CCHHHHHHHHHHHHHHhcCChHhHHHHHHc-------C----cHHHHHHhhcCCC-----HHHH-HHHHHHHHHHhcCCh
Q 015709 186 PDTDIRKISAWILGKASQNNPLVQKQVLEL-------G----ALSKLMKMVKSSF-----VEEA-VKALYTVSSLIRNNL 248 (402)
Q Consensus 186 ~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~-------g----~L~~Ll~LL~s~~-----~~vr-~kAl~ALS~LiR~~~ 248 (402)
..-++|..|+.|+-....+|+..|..|++. + ....|+.-|-+.+ ...+ -.|...++-++++++
T Consensus 50 ~~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~ 129 (312)
T PF04869_consen 50 QPFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNP 129 (312)
T ss_dssp S-HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-H
T ss_pred cchHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCH
Confidence 367899999999999999999999999985 1 1223444443111 2333 378899999999999
Q ss_pred hcHHHHHhc------Cc------HHHHHHhhcCC---CccHHHHHHHHHHHHHHhhcccccCCCCcchhHH-hCCcHHHH
Q 015709 249 AGQEMFYVE------AG------DLMLQDILGNS---SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR-DRFFLKSV 312 (402)
Q Consensus 249 ~~~~~f~~~------gG------i~~L~~lL~s~---~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~-~~g~v~~L 312 (402)
.+.+....- .| ++.+..+|... +.+++++.--+.+|..-+. .++.....|. +..-++.|
T Consensus 130 ~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~-----e~p~AV~~FL~~~s~l~~L 204 (312)
T PF04869_consen 130 EAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLF-----ECPDAVNDFLSEGSNLQSL 204 (312)
T ss_dssp HHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHT-----T-HHHHHHHHCSTTHHHHH
T ss_pred HHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHh-----CCHHHHHHHHcCcchHHHH
Confidence 987776542 12 34455555541 3467777666666665553 3455555555 45689999
Q ss_pred HHhhcC-C--ChHHHHHHHHHHHHHhc
Q 015709 313 VDLTAS-A--DLDLQEKALAAIKNLLQ 336 (402)
Q Consensus 313 v~lL~~-~--d~dv~E~aL~aL~~L~~ 336 (402)
++.... + ++-+|--++..|+-+..
T Consensus 205 i~~~~~~~~~~~~VqGL~A~LLGicye 231 (312)
T PF04869_consen 205 IEFSNQSSSEDVLVQGLCAFLLGICYE 231 (312)
T ss_dssp HHHHS--TCCCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCCCCcchHHHHHHHHHHHHHH
Confidence 997543 3 44455444444444444
No 173
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=86.79 E-value=8.8 Score=34.59 Aligned_cols=108 Identities=15% Similarity=0.098 Sum_probs=73.9
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcC--cHHHHHHhhcCCC-HHHHHHHHHHHHH---HhcCChh
Q 015709 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELG--ALSKLMKMVKSSF-VEEAVKALYTVSS---LIRNNLA 249 (402)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g--~L~~Ll~LL~s~~-~~vr~kAl~ALS~---LiR~~~~ 249 (402)
+..+.++|+++++.-|+.++..++..+++++ .+.+.+++ .+..|+++|+..+ ..++..|+.+++. .++++|.
T Consensus 27 ~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 27 VTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 5567789999999999999999999999874 24454443 5888999999865 4566666666665 5566776
Q ss_pred cHHHHHhcCc---HHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015709 250 GQEMFYVEAG---DLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (402)
Q Consensus 250 ~~~~f~~~gG---i~~L~~lL~s~~~d~klq~kA~~lL~~L~~ 289 (402)
-..++.-... ++.++.++++ ......++.++..+..
T Consensus 105 l~Rei~tp~l~~~i~~ll~l~~~----~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 105 LTREIATPNLPKFIQSLLQLLQD----SSCPETALDALATLLP 143 (165)
T ss_pred hHHHHhhccHHHHHHHHHHHHhc----cccHHHHHHHHHHHHH
Confidence 6655544332 3334444442 2356678888888775
No 174
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=86.75 E-value=37 Score=34.17 Aligned_cols=105 Identities=15% Similarity=0.177 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHhcCChhcHHHHHhcCc----HHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCC-cchhHHh
Q 015709 231 EEAVKALYTVSSLIRNNLAGQEMFYVEAG----DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKV-EPPLFRD 305 (402)
Q Consensus 231 ~vr~kAl~ALS~LiR~~~~~~~~f~~~gG----i~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~-~~~~l~~ 305 (402)
.+..-|+.....+++.+......|...+- .+.-..++.+.+ .-.++.+..++.++... ..+.. ....+.+
T Consensus 181 diasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~N--yvtkrqs~kllg~llld---r~N~~~M~kYiss 255 (342)
T KOG1566|consen 181 DIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSEN--YVTKRQSLKLLGELLLD---RSNSAVMTKYISS 255 (342)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccc--eehHHHHHHhHHHHHhC---CCcHHHHHHHhcC
Confidence 34556677777777777777888877664 344666788763 45789999999998853 22322 3345556
Q ss_pred CCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChh
Q 015709 306 RFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTT 340 (402)
Q Consensus 306 ~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~ 340 (402)
..-++.+..+|+.+...+|-.|-......+..+.+
T Consensus 256 ~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK 290 (342)
T KOG1566|consen 256 PENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNK 290 (342)
T ss_pred HHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCC
Confidence 78889999999999899999999988888877654
No 175
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=86.49 E-value=7.2 Score=42.16 Aligned_cols=165 Identities=14% Similarity=0.090 Sum_probs=85.8
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCC----CCHHHHHHHHHHHHHHhcCChHh----
Q 015709 137 IDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH----PDTDIRKISAWILGKASQNNPLV---- 208 (402)
Q Consensus 137 l~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s----~~~~Ir~~Aa~vLg~~aqNNp~~---- 208 (402)
++.+.+...+..+....+-.|...+...+ . ..+..+..++++ .++.++..|.-.+|+++...-..
T Consensus 401 ~~~I~~~~~~~~ea~~~l~~l~~~~~~Pt--~-----e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~ 473 (618)
T PF01347_consen 401 KDLIKSKKLTDDEAAQLLASLPFHVRRPT--E-----ELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSA 473 (618)
T ss_dssp HHHHHTT-S-HHHHHHHHHHHHHT-------H-----HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT----
T ss_pred HHHHHcCCCCHHHHHHHHHHHHhhcCCCC--H-----HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeeccccc
Confidence 33444455565666666666666552221 1 123334445544 46778888888888777431111
Q ss_pred -----HHHHHHcCcHHHHHHhhc----CCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCC-CccHHHHH
Q 015709 209 -----QKQVLELGALSKLMKMVK----SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS-SFEIRLHR 278 (402)
Q Consensus 209 -----Q~~~le~g~L~~Ll~LL~----s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~-~~d~klq~ 278 (402)
....+....++.|...+. ..+...+..++-||+|+ +++. .++.|..++.+. ..+..+|.
T Consensus 474 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~--g~~~---------~i~~l~~~i~~~~~~~~~~R~ 542 (618)
T PF01347_consen 474 EFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNL--GHPE---------SIPVLLPYIEGKEEVPHFIRV 542 (618)
T ss_dssp -------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--T-GG---------GHHHHHTTSTTSS-S-HHHHH
T ss_pred ccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhcc--CCch---------hhHHHHhHhhhccccchHHHH
Confidence 111222345666776666 22345678899999998 3443 445566666654 34667888
Q ss_pred HHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcC--CChHHHHHHHHHHH
Q 015709 279 KAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS--ADLDLQEKALAAIK 332 (402)
Q Consensus 279 kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~--~d~dv~E~aL~aL~ 332 (402)
.|++++..++.. .+ ..+.+.+..+..+ .++++|-.|..+|.
T Consensus 543 ~Ai~Alr~~~~~-----~~--------~~v~~~l~~I~~n~~e~~EvRiaA~~~lm 585 (618)
T PF01347_consen 543 AAIQALRRLAKH-----CP--------EKVREILLPIFMNTTEDPEVRIAAYLILM 585 (618)
T ss_dssp HHHHTTTTGGGT------H--------HHHHHHHHHHHH-TTS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc-----Cc--------HHHHHHHHHHhcCCCCChhHHHHHHHHHH
Confidence 999998877531 11 1223344444443 37788888875443
No 176
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=86.46 E-value=7.8 Score=38.15 Aligned_cols=112 Identities=17% Similarity=0.048 Sum_probs=78.0
Q ss_pred CcHHHHH-HhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhccccc
Q 015709 216 GALSKLM-KMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLEN 294 (402)
Q Consensus 216 g~L~~Ll-~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~ 294 (402)
+.+..|+ .-+.+.++.+|..|+-+||-.+--++..... -+..+.+.++.+ +..++..|+.++.+++...
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~~--~~~v~~~al~~l~Dll~~~--- 95 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQKD--DEEVKITALKALFDLLLTH--- 95 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHc---
Confidence 4455555 5677778899999998888544334332222 345677777554 6779999999999998632
Q ss_pred CCCCcch-------hHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCC
Q 015709 295 MHKVEPP-------LFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 338 (402)
Q Consensus 295 ~~~~~~~-------~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~ 338 (402)
+....+ ......+++.+.+.|.+.+++++..++..++.|+-.+
T Consensus 96 -g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~ 145 (298)
T PF12719_consen 96 -GIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSG 145 (298)
T ss_pred -CchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Confidence 212111 1223567888889999999999999999999987654
No 177
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=86.24 E-value=5.6 Score=33.13 Aligned_cols=92 Identities=13% Similarity=0.096 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHhcCChHhHHHHH-HcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhh
Q 015709 189 DIRKISAWILGKASQNNPLVQKQVL-ELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDIL 267 (402)
Q Consensus 189 ~Ir~~Aa~vLg~~aqNNp~~Q~~~l-e~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL 267 (402)
+||..|..-|-+=-.++--+-..+. +...+..|+..++.++......++.-|+.+++ +|.+...+.+.|+.+.|.++=
T Consensus 2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~-~~~a~~~l~~iG~~~fL~klr 80 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLK-SPYAAQILRDIGAVRFLSKLR 80 (98)
T ss_pred hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHh-CcHHHHHHHHccHHHHHHHHH
Confidence 6777776655443333333333333 45678899999998887788899999999887 578888899999999988765
Q ss_pred cCCCccHHHHHHHHHH
Q 015709 268 GNSSFEIRLHRKAVSL 283 (402)
Q Consensus 268 ~s~~~d~klq~kA~~l 283 (402)
... ++.++...-.+
T Consensus 81 ~~~--~~~~~~~id~i 94 (98)
T PF14726_consen 81 PNV--EPNLQAEIDEI 94 (98)
T ss_pred hcC--CHHHHHHHHHH
Confidence 432 45455544433
No 178
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=86.24 E-value=4.4 Score=42.89 Aligned_cols=176 Identities=15% Similarity=0.129 Sum_probs=97.0
Q ss_pred HHHHHHHHHccCCCCchhHHH-hcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhc----C--ChHhHHHHHHcCcHHHHHH
Q 015709 151 QRALQELLILVEPIDNANDLS-KLGGLSVLVGQLNHPDTDIRKISAWILGKASQ----N--NPLVQKQVLELGALSKLMK 223 (402)
Q Consensus 151 ~~AL~~L~~Lve~iDnA~~l~-~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aq----N--Np~~Q~~~le~g~L~~Ll~ 223 (402)
..|+..+.-+|-..-.+.+.. -......++..|.+..-..|..|+|.+|++.- | ||.++..=...-.|.++++
T Consensus 409 ~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~ 488 (728)
T KOG4535|consen 409 AAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLR 488 (728)
T ss_pred HHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHH
Confidence 344444444443333333321 12344555566666677899999999999874 3 4444443333334566666
Q ss_pred hhcCC---CHHHHHHHHHHHHHHhcCChhcH---HHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCC
Q 015709 224 MVKSS---FVEEAVKALYTVSSLIRNNLAGQ---EMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHK 297 (402)
Q Consensus 224 LL~s~---~~~vr~kAl~ALS~LiR~~~~~~---~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~ 297 (402)
..... ...|+..|..||+++..--.+.+ -.....|.+..+...--.+ ...++|-+|+.+++||..+ +
T Consensus 489 ~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~-~~~kV~WNaCya~gNLfkn------~ 561 (728)
T KOG4535|consen 489 SAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTE-AAMKVRWNACYAMGNLFKN------P 561 (728)
T ss_pred HHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecc-cccccchHHHHHHHHhhcC------c
Confidence 55432 35678888888888764321111 1111223333333332223 3678999999999999853 2
Q ss_pred CcchhHHhCCcHH----HHHHhhcC-CChHHHHHHHHHHHHHh
Q 015709 298 VEPPLFRDRFFLK----SVVDLTAS-ADLDLQEKALAAIKNLL 335 (402)
Q Consensus 298 ~~~~~l~~~g~v~----~Lv~lL~~-~d~dv~E~aL~aL~~L~ 335 (402)
.. .+.+..|-+ .|..++.. .|-++|-.|+.+|..-.
T Consensus 562 a~--~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~ 602 (728)
T KOG4535|consen 562 AL--PLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPG 602 (728)
T ss_pred cc--cccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCC
Confidence 21 123333333 34444443 47788888887665443
No 179
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=86.05 E-value=8.9 Score=39.49 Aligned_cols=161 Identities=14% Similarity=0.116 Sum_probs=103.0
Q ss_pred HHHHHHHccCCC-CchhHHHhcCCHHHHHHhcCCCC----------------------------------HHHHHHHHHH
Q 015709 153 ALQELLILVEPI-DNANDLSKLGGLSVLVGQLNHPD----------------------------------TDIRKISAWI 197 (402)
Q Consensus 153 AL~~L~~Lve~i-DnA~~l~~lGgl~~Li~lL~s~~----------------------------------~~Ir~~Aa~v 197 (402)
|+..|+.++... +-...|..+||+..+++.|..+- ..+...-.+.
T Consensus 4 av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK~lLk~ 83 (379)
T PF06025_consen 4 AVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEENKNEEAGSGIPPEYKESSVDGYSISYQRQQLLKSLLKF 83 (379)
T ss_pred HHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcccccCCCCCCCCCcccccccccccCHHHHHHHHHHHHH
Confidence 445555555554 33456778888888865553210 1122233455
Q ss_pred HHHHhc---CChHhHHHHHH-cCcHHHHHHhhcCCC---HHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhc-C
Q 015709 198 LGKASQ---NNPLVQKQVLE-LGALSKLMKMVKSSF---VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILG-N 269 (402)
Q Consensus 198 Lg~~aq---NNp~~Q~~~le-~g~L~~Ll~LL~s~~---~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~-s 269 (402)
|..+.+ ++...-..+++ ...+..|-.++++.. ..+-.-|+..++..+.+-|.....+.++|-++.+.+.+. .
T Consensus 84 l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~ 163 (379)
T PF06025_consen 84 LSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAK 163 (379)
T ss_pred HHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhcc
Confidence 556666 33333344555 334445556666644 556788999999999999999999999999999988887 3
Q ss_pred C-CccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCC
Q 015709 270 S-SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA 319 (402)
Q Consensus 270 ~-~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~ 319 (402)
. -.+..+-.-.-.++..||- +..-.+.+.+.+.++.+.+++.++
T Consensus 164 ~i~~s~e~l~~lP~~l~AicL------N~~Gl~~~~~~~~l~~~f~if~s~ 208 (379)
T PF06025_consen 164 GILPSSEVLTSLPNVLSAICL------NNRGLEKVKSSNPLDKLFEIFTSP 208 (379)
T ss_pred CCCCcHHHHHHHHHHHhHHhc------CHHHHHHHHhcChHHHHHHHhCCH
Confidence 2 1233345555566777774 456677778888888888877665
No 180
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.66 E-value=51 Score=37.38 Aligned_cols=189 Identities=13% Similarity=0.081 Sum_probs=123.4
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHH
Q 015709 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK 210 (402)
Q Consensus 131 ~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~ 210 (402)
+...+++.-+.++.. --|-.++..|..++++-+-+..+..-|.+...+..|++.++=|=-.|...+.++|.-
T Consensus 727 e~~qeai~sl~d~qv--pik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev------ 798 (982)
T KOG4653|consen 727 EPLQEAISSLHDDQV--PIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV------ 798 (982)
T ss_pred HHHHHHHHHhcCCcc--cchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh------
Confidence 455666666666643 357889999999999888888888889999999999999998888888888888753
Q ss_pred HHHHcCcHHHHHH-hhcCCC---HHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHH
Q 015709 211 QVLELGALSKLMK-MVKSSF---VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGD 286 (402)
Q Consensus 211 ~~le~g~L~~Ll~-LL~s~~---~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~ 286 (402)
.....+|.|.. ..++.+ ++.+.+.=-||..+++--.+-...+.+ --+........++ +...|.-++..++.
T Consensus 799 --y~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrep--d~~~RaSS~a~lg~ 873 (982)
T KOG4653|consen 799 --YPEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREP--DHEFRASSLANLGQ 873 (982)
T ss_pred --cchhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCc--hHHHHHhHHHHHHH
Confidence 44578888887 444432 244555556666666543332222221 1222222333443 67789999999999
Q ss_pred HhhcccccCCCCcchhHHhCCcHHHHHHhhcCC-ChHHHHHHHHHHHHHhcCC
Q 015709 287 LAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKALAAIKNLLQLR 338 (402)
Q Consensus 287 L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~dv~E~aL~aL~~L~~~~ 338 (402)
||.- ..-...+.+ +.++..++.+...+ .+-+|..|...+..+....
T Consensus 874 Lcq~----~a~~vsd~~--~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~t 920 (982)
T KOG4653|consen 874 LCQL----LAFQVSDFF--HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGT 920 (982)
T ss_pred HHHH----HhhhhhHHH--HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhcc
Confidence 8852 011111122 23455566666665 6778888988888887653
No 181
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.61 E-value=1.4 Score=50.35 Aligned_cols=126 Identities=21% Similarity=0.232 Sum_probs=86.7
Q ss_pred HHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhc
Q 015709 238 YTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA 317 (402)
Q Consensus 238 ~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~ 317 (402)
-.|-++++++..++..|.+++|+.+|+.++-++ .-|.-.+.+++.|... ++.+ +.+..+-.+|+.|+
T Consensus 664 DcLisllKnnteNqklFreanGvklilpflind----ehRSslLrivscLitv-----dpkq----vhhqelmalVdtLk 730 (2799)
T KOG1788|consen 664 DCLISLLKNNTENQKLFREANGVKLILPFLIND----EHRSSLLRIVSCLITV-----DPKQ----VHHQELMALVDTLK 730 (2799)
T ss_pred HHHHHHHhccchhhHHHHhhcCceEEEEeeech----HHHHHHHHHHHHHhcc-----Cccc----ccHHHHHHHHHHHH
Confidence 456789999999999999999999999988653 2466677778888753 3332 12344556777776
Q ss_pred CC------------ChHHHHHHHHHHHHHhcCChhhHHHHHhcCCcHHHHHHHH--HHhHHhhhhhhHhhhHH
Q 015709 318 SA------------DLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLR--QQLQEVMLEEDQRDYAM 376 (402)
Q Consensus 318 ~~------------d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~~~L~~L~--~~~~~l~~~e~~~~y~~ 376 (402)
++ ..++....+.+|+.+.......+.+|+..+|+.-++..|. +...+++.+-|+--|.+
T Consensus 731 sgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyik 803 (2799)
T KOG1788|consen 731 SGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIK 803 (2799)
T ss_pred hcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHH
Confidence 52 2345666778888888777678889998888766666553 23555665555555543
No 182
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=85.51 E-value=22 Score=34.40 Aligned_cols=187 Identities=18% Similarity=0.144 Sum_probs=112.2
Q ss_pred HHHHHHHHHHccCC-CCchhHHHhcCCHHH-HHH-------hcCC----CCHHHHHHHHHHHHHHhcCChHhHHHHHHcC
Q 015709 150 SQRALQELLILVEP-IDNANDLSKLGGLSV-LVG-------QLNH----PDTDIRKISAWILGKASQNNPLVQKQVLELG 216 (402)
Q Consensus 150 k~~AL~~L~~Lve~-iDnA~~l~~lGgl~~-Li~-------lL~s----~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g 216 (402)
|+.||++|-.--++ .|.|-.+-..-|++. |++ +|+- ....=|...+-.|-.+...+|+.+..|++..
T Consensus 62 kEqaL~EL~rkreq~~dlAl~lW~s~gvmt~LLqEiisvYpiL~p~~l~~~~snRvcnaL~lLQclaShPetk~~Fl~Ah 141 (315)
T COG5209 62 KEQALDELFRKREQSPDLALELWRSDGVMTFLLQEIISVYPILSPSKLDERESNRVCNALNLLQCLASHPETKKVFLDAH 141 (315)
T ss_pred HHHHHHHHHHHHhcCCCeeeeehhccchHHHHHHHHHhhhhccCccccCchhhhHHHHHHHHHHHHhcCcchheeeeecc
Confidence 45577777765554 467776666555443 332 2221 2233344334444444446899999998875
Q ss_pred c---HHHHHHhhcCCC--HHHHHHHHHHHHHHhcCChhcHHHH-HhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015709 217 A---LSKLMKMVKSSF--VEEAVKALYTVSSLIRNNLAGQEMF-YVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (402)
Q Consensus 217 ~---L~~Ll~LL~s~~--~~vr~kAl~ALS~LiR~~~~~~~~f-~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~ 290 (402)
. +-+.+...++.+ +-.|..++..|++++.|..+-.-.| .....++.+..++... +.-.|.-|++.+.-+.-
T Consensus 142 iplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme~g--SElSktvaifI~qkil~- 218 (315)
T COG5209 142 IPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIMELG--SELSKTVAIFIFQKILG- 218 (315)
T ss_pred cceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHhh--hHHHHHHHHHHHHHHhc-
Confidence 3 223333333333 2358999999999999965555555 4578999999999876 34567788888877653
Q ss_pred ccccCCCCc----chhHHh----CCcHHHHHHh-hcCCChHHHHHHHHHHHHHhcCChhhHHHH
Q 015709 291 QLENMHKVE----PPLFRD----RFFLKSVVDL-TASADLDLQEKALAAIKNLLQLRTTEALVL 345 (402)
Q Consensus 291 ~l~~~~~~~----~~~l~~----~g~v~~Lv~l-L~~~d~dv~E~aL~aL~~L~~~~~~~~~~~ 345 (402)
+..- ++.+.. ..+++.++.. ...+...+..+++++-..|...+ ..|+.+
T Consensus 219 -----dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p-~aR~lL 276 (315)
T COG5209 219 -----DDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKP-HARALL 276 (315)
T ss_pred -----cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCH-hHHHHH
Confidence 2211 122211 2333444433 34457788899998888887664 355544
No 183
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=85.50 E-value=9.6 Score=34.28 Aligned_cols=144 Identities=17% Similarity=0.168 Sum_probs=87.4
Q ss_pred HHHHHHhcCC-CCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHH
Q 015709 176 LSVLVGQLNH-PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF 254 (402)
Q Consensus 176 l~~Li~lL~s-~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f 254 (402)
++.|+++|+. .+.++|..|.+++|.+-.=.|.-.+.+....- .-. -...+.......+ ...+..+..+.|
T Consensus 12 L~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~--~~~--~~~~~~~~~~~~l-----~~~~~~~~~ee~ 82 (160)
T PF11865_consen 12 LDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLD--SKS--SENSNDESTDISL-----PMMGISPSSEEY 82 (160)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCC--ccc--cccccccchhhHH-----hhccCCCchHHH
Confidence 5667788855 56999999999999998777754443322111 000 0000011111111 112333456778
Q ss_pred HhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHH
Q 015709 255 YVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNL 334 (402)
Q Consensus 255 ~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L 334 (402)
+-...+..|..+|++++. ..-+..++.++.++... .+....+.+- -+++.++..+++.+...+|..+.-|..|
T Consensus 83 y~~vvi~~L~~iL~D~sL-s~~h~~vv~ai~~If~~----l~~~cv~~L~--~viP~~l~~i~~~~~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 83 YPTVVINALMRILRDPSL-SSHHTAVVQAIMYIFKS----LGLKCVPYLP--QVIPIFLRVIRTCPDSLREFYFQQLADL 155 (160)
T ss_pred HHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHh----cCcCchhHHH--HHhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 888888999999987742 33455677777777642 2333344442 4788888888876668888888777766
Q ss_pred h
Q 015709 335 L 335 (402)
Q Consensus 335 ~ 335 (402)
.
T Consensus 156 v 156 (160)
T PF11865_consen 156 V 156 (160)
T ss_pred H
Confidence 5
No 184
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=85.40 E-value=9.5 Score=41.60 Aligned_cols=71 Identities=21% Similarity=0.146 Sum_probs=57.8
Q ss_pred cCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChH---hHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 015709 173 LGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPL---VQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRN 246 (402)
Q Consensus 173 lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~---~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~ 246 (402)
.|-+|.|...|++.+..|.......+|+++.|.|+ .++++.- ---|+++|++.+.++|..|.-.++++.|-
T Consensus 687 ~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRI---cfeLvd~Lks~nKeiRR~A~~tfG~Is~a 760 (975)
T COG5181 687 SGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRI---CFELVDSLKSWNKEIRRNATETFGCISRA 760 (975)
T ss_pred hhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHH---HHHHHHHHHHhhHHHHHhhhhhhhhHHhh
Confidence 35688899999999999999999999999999886 4444432 13578888888899999998888888765
No 185
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=85.37 E-value=5.8 Score=35.08 Aligned_cols=91 Identities=15% Similarity=0.159 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHH
Q 015709 234 VKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVV 313 (402)
Q Consensus 234 ~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv 313 (402)
-...-.|+-+++..+.+.. .++..|..=|+++ ++.++..|+.++-.++.+ .+..+...+.+.+++..|+
T Consensus 22 w~~ileicD~In~~~~~~k-----~a~ral~krl~~~--n~~vql~AL~LLe~~vkN----CG~~fh~evas~~fl~~l~ 90 (142)
T cd03569 22 LASILEICDMIRSKDVQPK-----YAMRALKKRLLSK--NPNVQLYALLLLESCVKN----CGTHFHDEVASREFMDELK 90 (142)
T ss_pred HHHHHHHHHHHhCCCCCHH-----HHHHHHHHHHcCC--ChHHHHHHHHHHHHHHHH----CCHHHHHHHhhHHHHHHHH
Confidence 3455667777776544322 3566777778875 688999999999988863 4555667778899999999
Q ss_pred HhhcC-CChHHHHHHHHHHHHHh
Q 015709 314 DLTAS-ADLDLQEKALAAIKNLL 335 (402)
Q Consensus 314 ~lL~~-~d~dv~E~aL~aL~~L~ 335 (402)
.++.. .++.++++++..+.+-+
T Consensus 91 ~l~~~~~~~~Vk~kil~li~~W~ 113 (142)
T cd03569 91 DLIKTTKNEEVRQKILELIQAWA 113 (142)
T ss_pred HHHcccCCHHHHHHHHHHHHHHH
Confidence 99974 58899999998888765
No 186
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=85.24 E-value=34 Score=34.36 Aligned_cols=159 Identities=12% Similarity=0.058 Sum_probs=107.5
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhc-CChHhHHHHHHc-----CcHHHHHHhhcCC--C--------HHHHHHH-HH
Q 015709 176 LSVLVGQLNHPDTDIRKISAWILGKASQ-NNPLVQKQVLEL-----GALSKLMKMVKSS--F--------VEEAVKA-LY 238 (402)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~vLg~~aq-NNp~~Q~~~le~-----g~L~~Ll~LL~s~--~--------~~vr~kA-l~ 238 (402)
+..+.+.|++..+.+...+.+++..++. ++......++.. ..+++|+..=... . +.+|... -+
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 7778889999999999999999999999 887777777654 2444444332211 1 1677655 45
Q ss_pred HHHHHhcCChhcHHHHHhcCc-HHHHHHhhcCCCccHHHHHHHHHHHHH-HhhcccccCCCCcchhHHhCCcHHHHHHhh
Q 015709 239 TVSSLIRNNLAGQEMFYVEAG-DLMLQDILGNSSFEIRLHRKAVSLVGD-LAKCQLENMHKVEPPLFRDRFFLKSVVDLT 316 (402)
Q Consensus 239 ALS~LiR~~~~~~~~f~~~gG-i~~L~~lL~s~~~d~klq~kA~~lL~~-L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL 316 (402)
.||-+..+++.....++..++ +..+.+-|..+ +..+....+..+.. +..+. ......+-.+.....+..|+.+-
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D--~~~~v~~iL~~l~~~Vl~~~--~v~r~~K~~~fn~~~L~~l~~Ly 213 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKD--PPETVILILETLKDKVLKDS--SVSRSTKCKLFNEWTLSQLASLY 213 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCC--CHHHHHHHHHHHHHHhccCC--CCChhhhhhhcCHHHHHHHHHHh
Confidence 666665556777777776554 45555556554 45566666666663 43221 11234455566778899999988
Q ss_pred cCCCh----HHHHHHHHHHHHHhcCC
Q 015709 317 ASADL----DLQEKALAAIKNLLQLR 338 (402)
Q Consensus 317 ~~~d~----dv~E~aL~aL~~L~~~~ 338 (402)
..++. .+.+.+-..|..+++++
T Consensus 214 ~~~~~~~~~~~~~~vh~fL~~lcT~p 239 (330)
T PF11707_consen 214 SRDGEDEKSSVADLVHEFLLALCTDP 239 (330)
T ss_pred cccCCcccchHHHHHHHHHHHHhcCC
Confidence 87777 88999988888888765
No 187
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=85.08 E-value=41 Score=33.53 Aligned_cols=150 Identities=17% Similarity=0.207 Sum_probs=90.6
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCC---CchhHHHhcCCHHHHHHhcCC--CCHHHHHHHHHHHHHHh---
Q 015709 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPI---DNANDLSKLGGLSVLVGQLNH--PDTDIRKISAWILGKAS--- 202 (402)
Q Consensus 131 ~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~i---DnA~~l~~lGgl~~Li~lL~s--~~~~Ir~~Aa~vLg~~a--- 202 (402)
+++-.++..++... + +++.-|+..+.-++=++ +.+..+.+ ...|+|.+.+.. ..+.+|..++.+||-++
T Consensus 86 tL~~~~~k~lkkg~-~-~E~~lA~~~l~Ll~ltlg~g~~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~ 162 (309)
T PF05004_consen 86 TLLDALLKSLKKGK-S-EEQALAARALALLALTLGAGEDSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVG 162 (309)
T ss_pred HHHHHHHHHhccCC-H-HHHHHHHHHHHHHhhhcCCCccHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhh
Confidence 45555666666544 3 56666777776665443 56667666 356777777754 45678878887777764
Q ss_pred cCChHhHHHHHHcCcHHHHH--HhhcCC----------CHHHHHHHHHHHHHHhcCChhc-HHHHHhcCcHHHHHHhhcC
Q 015709 203 QNNPLVQKQVLELGALSKLM--KMVKSS----------FVEEAVKALYTVSSLIRNNLAG-QEMFYVEAGDLMLQDILGN 269 (402)
Q Consensus 203 qNNp~~Q~~~le~g~L~~Ll--~LL~s~----------~~~vr~kAl~ALS~LiR~~~~~-~~~f~~~gGi~~L~~lL~s 269 (402)
.+.+..-...++ .+..+. ...+++ ++.+...|+.+-+-|+..-+.. ...+ -...++.|..+|.+
T Consensus 163 ~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~-~~~~~~~l~~lL~s 239 (309)
T PF05004_consen 163 GSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDL-LEEALPALSELLDS 239 (309)
T ss_pred cCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHHHHHHhcC
Confidence 334433332111 233121 112221 2457888888888888766552 2222 23468999999998
Q ss_pred CCccHHHHHHHHHHHHHHh
Q 015709 270 SSFEIRLHRKAVSLVGDLA 288 (402)
Q Consensus 270 ~~~d~klq~kA~~lL~~L~ 288 (402)
+ +..+|.-|--.|.-|.
T Consensus 240 ~--d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 240 D--DVDVRIAAGEAIALLY 256 (309)
T ss_pred C--CHHHHHHHHHHHHHHH
Confidence 7 6778888888877554
No 188
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=85.05 E-value=29 Score=37.87 Aligned_cols=127 Identities=21% Similarity=0.161 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHccCCCCc-hhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhh
Q 015709 147 LEDSQRALQELLILVEPIDN-ANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV 225 (402)
Q Consensus 147 ~e~k~~AL~~L~~Lve~iDn-A~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL 225 (402)
++..+.-+..+-++-.+-|- ..+|+. |-+..++..+.+++..||...+.+|+.++-+-.+. +..+-.|.+.+|.+-+
T Consensus 64 ~dRil~fl~~f~~Y~~~~dpeg~~~V~-~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eI-De~l~N~L~ekl~~R~ 141 (885)
T COG5218 64 PDRILSFLKRFFEYDMPDDPEGEELVA-GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREI-DEVLANGLLEKLSERL 141 (885)
T ss_pred HHHHHHHHHHHHHhcCCCChhhhHHHH-HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHHHHH
Confidence 34444444444443333332 244443 55677888889999999999999999998653333 3455568888888877
Q ss_pred cCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHH
Q 015709 226 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAV 281 (402)
Q Consensus 226 ~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~ 281 (402)
-+-.+.||..|+.+|+-.-. -..+.+-++ ...|+.+++.+. +..+|+-|+
T Consensus 142 ~DRE~~VR~eAv~~L~~~Qe-~~~neen~~----~n~l~~~vqnDP-S~EVRr~al 191 (885)
T COG5218 142 FDREKAVRREAVKVLCYYQE-MELNEENRI----VNLLKDIVQNDP-SDEVRRLAL 191 (885)
T ss_pred hcchHHHHHHHHHHHHHHHh-ccCChHHHH----HHHHHHHHhcCc-HHHHHHHHH
Confidence 77778899999999997642 222333333 337777787653 344666553
No 189
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=84.72 E-value=25 Score=37.77 Aligned_cols=109 Identities=15% Similarity=0.158 Sum_probs=65.6
Q ss_pred CCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhc-CC--CHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHH
Q 015709 186 PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK-SS--FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLM 262 (402)
Q Consensus 186 ~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~-s~--~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~ 262 (402)
.+.+-+..+..+|||+.. | ..++.|..++. +. +..+|..|+||+..+...+|.- .-+.
T Consensus 458 ~~~~~~~~~LkaLGN~g~--~---------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~ 518 (574)
T smart00638 458 GDEEEIQLYLKALGNAGH--P---------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEV 518 (574)
T ss_pred CCchheeeHHHhhhccCC--h---------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHH
Confidence 345556667777777753 3 23455556665 22 3568999999999887766653 2345
Q ss_pred HHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCC-ChHHHHHHH
Q 015709 263 LQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKAL 328 (402)
Q Consensus 263 L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~dv~E~aL 328 (402)
|..++.+...+..+|.-|..++-. .+|. ...+..+++.+..+ +..|.-.+.
T Consensus 519 l~~i~~n~~e~~EvRiaA~~~lm~--------t~P~-------~~~l~~ia~~l~~E~~~QV~sfv~ 570 (574)
T smart00638 519 LLPIYLNRAEPPEVRMAAVLVLME--------TKPS-------VALLQRIAELLNKEPNLQVASFVY 570 (574)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHh--------cCCC-------HHHHHHHHHHHhhcCcHHHHHHhH
Confidence 677777665566677766554432 1233 34566677777665 444444333
No 190
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.16 E-value=0.98 Score=45.83 Aligned_cols=64 Identities=13% Similarity=0.037 Sum_probs=55.4
Q ss_pred HHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcC--CCHHHHHHHHHHHHHHhcCChhcHHHHHh
Q 015709 193 ISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS--SFVEEAVKALYTVSSLIRNNLAGQEMFYV 256 (402)
Q Consensus 193 ~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s--~~~~vr~kAl~ALS~LiR~~~~~~~~f~~ 256 (402)
+-.+.||++|..+|..|+.+.+.||++.++.-..- .+|-++...++++-.++.+|..+|+.+.+
T Consensus 375 Hvir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~k 440 (478)
T KOG2676|consen 375 HVIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGK 440 (478)
T ss_pred HHHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhc
Confidence 35678999999999999999999999999876553 34778999999999999999999887643
No 191
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=84.06 E-value=21 Score=38.73 Aligned_cols=149 Identities=14% Similarity=0.132 Sum_probs=92.9
Q ss_pred HhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHh-hcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCc
Q 015709 181 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM-VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG 259 (402)
Q Consensus 181 ~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~L-L~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gG 259 (402)
.+|.+.++-+|...+..++.+--..- ..|++..|+.. +++.++.||..|+.||+-+|-..+. .
T Consensus 523 ell~d~ds~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~---------~ 586 (926)
T COG5116 523 ELLYDKDSILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD---------L 586 (926)
T ss_pred HHhcCchHHhhhccHHHHHHHHhcCC-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCcc---------h
Confidence 46677888888888877766543211 24678888888 6666789999999999987655443 3
Q ss_pred HHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCCh
Q 015709 260 DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT 339 (402)
Q Consensus 260 i~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~ 339 (402)
+.-.+++|... .++-+|--.++++.-.|... .+ .-.+..|-.+...++.-+|..|+-++..++..
T Consensus 587 lv~tvelLs~s-hN~hVR~g~AvaLGiacag~---G~---------~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q-- 651 (926)
T COG5116 587 LVGTVELLSES-HNFHVRAGVAVALGIACAGT---GD---------KVATDILEALMYDTNDFVRQSAMIAVGMILMQ-- 651 (926)
T ss_pred hhHHHHHhhhc-cchhhhhhhHHHhhhhhcCC---cc---------HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhh--
Confidence 33455666544 36668888888888777531 11 11222333344444555677777777765532
Q ss_pred hhHHHHHhcCCcHHHHHHHHHHhHHhhh
Q 015709 340 TEALVLKDFCGLDTALERLRQQLQEVML 367 (402)
Q Consensus 340 ~~~~~~~~~~GL~~~L~~L~~~~~~l~~ 367 (402)
| ...|-|-..+++.++..++.
T Consensus 652 -~------n~~Lnp~v~~I~k~f~~vI~ 672 (926)
T COG5116 652 -C------NPELNPNVKRIIKKFNRVIV 672 (926)
T ss_pred -c------CcccChhHHHHHHHHHHHHh
Confidence 1 33455556666777776664
No 192
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=83.89 E-value=6.1 Score=42.73 Aligned_cols=120 Identities=13% Similarity=0.111 Sum_probs=72.4
Q ss_pred HHHHHHhcC----CCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCC---CHHHHHHHHHHHHHHhcCCh
Q 015709 176 LSVLVGQLN----HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS---FVEEAVKALYTVSSLIRNNL 248 (402)
Q Consensus 176 l~~Li~lL~----s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~---~~~vr~kAl~ALS~LiR~~~ 248 (402)
++.|...|. ..+.+-+..+..+|||+.. | ..++.|..++... +..+|..|++|+..+...+|
T Consensus 488 ~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~--~---------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~ 556 (618)
T PF01347_consen 488 VPYLEQELKEAVSRGDEEEKIVYLKALGNLGH--P---------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCP 556 (618)
T ss_dssp THHHHHHHHHHHHTT-HHHHHHHHHHHHHHT---G---------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-H
T ss_pred HHHHHHHHHHHhhccCHHHHHHHHHHhhccCC--c---------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCc
Confidence 444544443 3556777888888888853 2 3688888888877 45789999999998877776
Q ss_pred hcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCC-ChHHHHHH
Q 015709 249 AGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKA 327 (402)
Q Consensus 249 ~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~dv~E~a 327 (402)
.- ..+.|..++.+...+..+|..|..+|-. + +|. ...+..++..|..+ +..|.--+
T Consensus 557 ~~--------v~~~l~~I~~n~~e~~EvRiaA~~~lm~-~-------~P~-------~~~l~~i~~~l~~E~~~QV~sfv 613 (618)
T PF01347_consen 557 EK--------VREILLPIFMNTTEDPEVRIAAYLILMR-C-------NPS-------PSVLQRIAQSLWNEPSNQVASFV 613 (618)
T ss_dssp HH--------HHHHHHHHHH-TTS-HHHHHHHHHHHHH-T-----------------HHHHHHHHHHHTT-S-HHHHHHH
T ss_pred HH--------HHHHHHHHhcCCCCChhHHHHHHHHHHh-c-------CCC-------HHHHHHHHHHHhhCchHHHHHHH
Confidence 43 2345677777665566677666544332 1 233 34566777777655 45555444
Q ss_pred HH
Q 015709 328 LA 329 (402)
Q Consensus 328 L~ 329 (402)
..
T Consensus 614 ~S 615 (618)
T PF01347_consen 614 YS 615 (618)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 193
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=83.16 E-value=23 Score=41.49 Aligned_cols=69 Identities=20% Similarity=0.199 Sum_probs=41.1
Q ss_pred HHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcC
Q 015709 260 DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 337 (402)
Q Consensus 260 i~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~ 337 (402)
+++|.+.|.+. ++-+..+|+..++.|+... --.+..+ -.+++.+.-+|-.++.=+|..++..+....+.
T Consensus 658 lPLl~Q~ltD~--EE~Viv~aL~~ls~Lik~~-----ll~K~~v--~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 658 LPLLQQGLTDG--EEAVIVSALGSLSILIKLG-----LLRKPAV--KDILQDVLPLLCHPNLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred HHHHHHhccCc--chhhHHHHHHHHHHHHHhc-----ccchHHH--HHHHHhhhhheeCchHHHHHHHHHHHHHHHhh
Confidence 34555555554 4557777888877777531 0111111 12444455567778888888888888777654
No 194
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=83.15 E-value=81 Score=35.55 Aligned_cols=191 Identities=10% Similarity=-0.010 Sum_probs=105.2
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhc-CCCCHHHHHHHHHHHHHHhcCChHhHH
Q 015709 132 LIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQL-NHPDTDIRKISAWILGKASQNNPLVQK 210 (402)
Q Consensus 132 lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL-~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~ 210 (402)
.|...+.-+..+ +.|-|...|..+..++.-.-.-..+....-+|.++... ....+.=|..--.++-+.+. ..+
T Consensus 637 vmlil~rEf~sP--DeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~----ia~ 710 (1172)
T KOG0213|consen 637 VMLILIREFGSP--DEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVE----IAA 710 (1172)
T ss_pred HHHHHHHhhCCC--hHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHH----HHH
Confidence 465555555554 45677888999999886544444555555666665433 11110000000011111110 111
Q ss_pred HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh-cHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015709 211 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA-GQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (402)
Q Consensus 211 ~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~-~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~ 289 (402)
.+-....+..++.=++++++..|.-+..+++.++..-+. ....-.+.--+..+...++....+..+-.....++.+=..
T Consensus 711 KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg 790 (1172)
T KOG0213|consen 711 KVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALG 790 (1172)
T ss_pred HhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHh
Confidence 111122356677777788888898888998888765332 1333333344555566666544445455555555554321
Q ss_pred cccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcC
Q 015709 290 CQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 337 (402)
Q Consensus 290 ~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~ 337 (402)
...++.+ .-+|..+...|+++.++++.+++..+..++..
T Consensus 791 -------~r~kpyl--pqi~stiL~rLnnksa~vRqqaadlis~la~V 829 (1172)
T KOG0213|consen 791 -------GRVKPYL--PQICSTILWRLNNKSAKVRQQAADLISSLAKV 829 (1172)
T ss_pred -------hccccch--HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHH
Confidence 1112222 12456677789999999999999999988743
No 195
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.12 E-value=8.9 Score=38.39 Aligned_cols=141 Identities=16% Similarity=0.136 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCC--CchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcC-C
Q 015709 129 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPI--DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQN-N 205 (402)
Q Consensus 129 d~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~i--DnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqN-N 205 (402)
.-..+++++..|.+.+ -+.++.+|..+..|.+-. .....|++ .+..+++-++++...|=..||.+++.+.++ |
T Consensus 86 p~~al~~~l~~L~s~d--W~~~vdgLn~irrLs~fh~e~l~~~L~~--vii~vvkslKNlRS~VsraA~~t~~difs~ln 161 (334)
T KOG2933|consen 86 PEAALKQALKKLSSDD--WEDKVDGLNSIRRLSEFHPESLNPMLHE--VIIAVVKSLKNLRSAVSRAACMTLADIFSSLN 161 (334)
T ss_pred HHHHHHHHHHHhchHH--HHHHhhhHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888888764 467888888888766432 22334443 366777888999999999999999999986 3
Q ss_pred hHhHHHHHHcCcHHHHH-Hhhc---CCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHH
Q 015709 206 PLVQKQVLELGALSKLM-KMVK---SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAV 281 (402)
Q Consensus 206 p~~Q~~~le~g~L~~Ll-~LL~---s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~ 281 (402)
..+++ .+..++ .|+. .++..++..|--||-+|+.+-.++. .++.|..+++.. ..+++++++
T Consensus 162 ~~i~~------~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~-------~L~~L~~~~~~~--n~r~r~~a~ 226 (334)
T KOG2933|consen 162 NSIDQ------ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQK-------LLRKLIPILQHS--NPRVRAKAA 226 (334)
T ss_pred HHHHH------HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHH-------HHHHHHHHHhhh--chhhhhhhh
Confidence 33333 233333 2333 2345689999999999998754422 234556666654 577888887
Q ss_pred HHHHHHh
Q 015709 282 SLVGDLA 288 (402)
Q Consensus 282 ~lL~~L~ 288 (402)
....+..
T Consensus 227 ~~~~~~v 233 (334)
T KOG2933|consen 227 LCFSRCV 233 (334)
T ss_pred ccccccc
Confidence 6666543
No 196
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.63 E-value=22 Score=40.67 Aligned_cols=112 Identities=14% Similarity=0.102 Sum_probs=68.9
Q ss_pred CcHHHHHHhhc------CCCHHH--HHHHHHHHHHHh---cCChh---cHHHHHhcCcHHHHHHhhcCCCccHHHHHHHH
Q 015709 216 GALSKLMKMVK------SSFVEE--AVKALYTVSSLI---RNNLA---GQEMFYVEAGDLMLQDILGNSSFEIRLHRKAV 281 (402)
Q Consensus 216 g~L~~Ll~LL~------s~~~~v--r~kAl~ALS~Li---R~~~~---~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~ 281 (402)
|.++.+++++. .+.... +.-|+.++|+++ ....+ ..+.|+ +..+...++++. --+|.|||
T Consensus 410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~fl----v~hVfP~f~s~~--g~Lrarac 483 (1010)
T KOG1991|consen 410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFL----VNHVFPEFQSPY--GYLRARAC 483 (1010)
T ss_pred hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHH----HHHhhHhhcCch--hHHHHHHH
Confidence 56777788887 222223 334666666654 33332 233333 344455567763 34899999
Q ss_pred HHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhc-CCChHHHHHHHHHHHHHhcCChh
Q 015709 282 SLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA-SADLDLQEKALAAIKNLLQLRTT 340 (402)
Q Consensus 282 ~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~-~~d~dv~E~aL~aL~~L~~~~~~ 340 (402)
|.++.++.. +-.....+ ..+++...++|. +.+..|+-.|+.||..+..+.+.
T Consensus 484 ~vl~~~~~~-----df~d~~~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~ 536 (1010)
T KOG1991|consen 484 WVLSQFSSI-----DFKDPNNL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQ 536 (1010)
T ss_pred HHHHHHHhc-----cCCChHHH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchh
Confidence 999999842 21222222 345666677777 56888999999999999987543
No 197
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=82.44 E-value=7 Score=34.00 Aligned_cols=90 Identities=18% Similarity=0.213 Sum_probs=66.3
Q ss_pred HHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHH
Q 015709 235 KALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVD 314 (402)
Q Consensus 235 kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~ 314 (402)
..+-.|+-+++..+.+... ++..|..=|+++ ++.++..|+.++-.++.+ ....+...+.+.+++..|+.
T Consensus 19 ~~~l~icD~i~~~~~~~k~-----a~r~l~krl~~~--n~~v~l~AL~lLe~~vkN----cg~~f~~ev~s~~fl~~L~~ 87 (133)
T smart00288 19 ELILEICDLINSTPDGPKD-----AVRLLKKRLNNK--NPHVALLALTLLDACVKN----CGSKFHLEVASKEFLNELVK 87 (133)
T ss_pred HHHHHHHHHHhCCCccHHH-----HHHHHHHHHcCC--CHHHHHHHHHHHHHHHHH----CCHHHHHHHHhHHHHHHHHH
Confidence 4455667777776543332 455677778875 688999999999998863 45566677788899999999
Q ss_pred hhcCC-ChH-HHHHHHHHHHHHh
Q 015709 315 LTASA-DLD-LQEKALAAIKNLL 335 (402)
Q Consensus 315 lL~~~-d~d-v~E~aL~aL~~L~ 335 (402)
++... +.. ++++++..+..-.
T Consensus 88 l~~~~~~~~~Vk~kil~li~~W~ 110 (133)
T smart00288 88 LIKPKYPLPLVKKRILELIQEWA 110 (133)
T ss_pred HHcCCCCcHHHHHHHHHHHHHHH
Confidence 98876 334 9999998887765
No 198
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=82.32 E-value=22 Score=31.28 Aligned_cols=72 Identities=14% Similarity=0.112 Sum_probs=54.0
Q ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHhcCC-hHhHHHHHHcCcHHH-HHHhhcCC---CHHHHHHHHHHHHHHhcCC
Q 015709 176 LSVLVGQLN-HPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSK-LMKMVKSS---FVEEAVKALYTVSSLIRNN 247 (402)
Q Consensus 176 l~~Li~lL~-s~~~~Ir~~Aa~vLg~~aqNN-p~~Q~~~le~g~L~~-Ll~LL~s~---~~~vr~kAl~ALS~LiR~~ 247 (402)
+..|-.=|+ +.++.++..|..+|-++++|. +..+..|...+.+.. |+++++.. +..|+.+.+.-|-+-...+
T Consensus 40 ~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f 117 (141)
T cd03565 40 VRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAF 117 (141)
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHh
Confidence 344444455 468999999999999999997 468888888899987 99999742 3477888777776655443
No 199
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=82.15 E-value=4.7 Score=37.10 Aligned_cols=67 Identities=15% Similarity=0.125 Sum_probs=57.7
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcC---ChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhc
Q 015709 176 LSVLVGQLNHPDTDIRKISAWILGKASQN---NPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG 250 (402)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~vLg~~aqN---Np~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~ 250 (402)
|+.++++.-+++..+|..|..+|+.+.+. ||. -.+|.|+.|..++++.++.+|...+..+...++.-
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~--------~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~ 79 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILRQGLVNPK--------QCVPTLIALETSPNPSIRSRAYQLLKELHEKHESL 79 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH--------HHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHH
Confidence 56778888899999999999999999874 663 36899999999989999999999999998877753
No 200
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=81.74 E-value=11 Score=36.29 Aligned_cols=178 Identities=16% Similarity=0.137 Sum_probs=99.0
Q ss_pred cCCCCHHHHHHhHHHHHHHHHHcCCCC-----HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCC-
Q 015709 102 VQRLSPSELKKRQMEIKELMEKLKTPS-----DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGG- 175 (402)
Q Consensus 102 ~~~~s~e~l~~r~~~L~ea~~~l~~~~-----d~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGg- 175 (402)
..+++++++ ..|+..++.+..++ .......+...+.. .+.+.+..++|-++-++-+...+..+...++
T Consensus 33 ~~~l~~~el----~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~ 106 (268)
T PF08324_consen 33 ELKLSEEEL----ESLESLLSALKSTSAYHSDLSAWLILLLKILLS--WPPESRFPALDLLRLAALHPPASDLLASEDSG 106 (268)
T ss_dssp CT-S-HHHH----HHHHHHHCCCCCC-SS---HHHHHHHHHHHHCC--S-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH
T ss_pred ccCCCHHHH----HHHHHHHHHhcCCCccccchhHHHHHHHHHHHh--CCCccchhHHhHHHHHHhCccHHHHHhccccc
Confidence 457888765 34666666554322 12233333444333 3446789999999998887777766666542
Q ss_pred -HHHHHHhc----CCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcC--cHHHHHHhhcCC----CHHHHHHH---HHHHH
Q 015709 176 -LSVLVGQL----NHPDTDIRKISAWILGKASQNNPLVQKQVLELG--ALSKLMKMVKSS----FVEEAVKA---LYTVS 241 (402)
Q Consensus 176 -l~~Li~lL----~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g--~L~~Ll~LL~s~----~~~vr~kA---l~ALS 241 (402)
...+..++ .+..+..+..++++++|+..+.+ .+..++.+. .+...+..+.+. +..++..+ ++-+|
T Consensus 107 ~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nls 185 (268)
T PF08324_consen 107 IADLLSTLISSGSSSSPPANQMLALRLLANLFSHPP-GRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLS 185 (268)
T ss_dssp -HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCC-CHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCc-cHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHH
Confidence 33444333 23678999999999999998644 556666543 344444444443 34555443 33344
Q ss_pred HHhcCChh-cHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015709 242 SLIRNNLA-GQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (402)
Q Consensus 242 ~LiR~~~~-~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~ 289 (402)
......+. .... ..-+..+.+.+.....+....-+++-++++|+.
T Consensus 186 v~~~~~~~~~~~~---~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~ 231 (268)
T PF08324_consen 186 VLLHKNRSDEEWQ---SELLSSIIEVLSREESDEEALYRLLVALGTLLS 231 (268)
T ss_dssp HHHHHCTS-CCHH---HHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHC
T ss_pred HHHHhcCCChHHH---HHHHHHHHHHhccccCCHHHHHHHHHHHHHHhc
Confidence 43333331 1011 112344445333332356688899999999984
No 201
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=81.64 E-value=21 Score=34.89 Aligned_cols=143 Identities=17% Similarity=0.124 Sum_probs=82.2
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcC--CCHHHHHHHHHHHHHHhcCChhcHHHHHh
Q 015709 179 LVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS--SFVEEAVKALYTVSSLIRNNLAGQEMFYV 256 (402)
Q Consensus 179 Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s--~~~~vr~kAl~ALS~LiR~~~~~~~~f~~ 256 (402)
|=.+|+++++.+|..|..+|+.+..+-|... +...-+..|+..+.+ ++.....-++.++..+++...-. .
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~-----~ 75 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFS-----P 75 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCC-----h
Confidence 4468899999999999999999998866321 222234555554443 12223333366666666432211 1
Q ss_pred cCcHHHHHHhhcCC---CccHHHHHHHHHHHHHHhhcccccCCCCcchhHH--hCCcHHHHHHhhcCC-ChHHHHHHHHH
Q 015709 257 EAGDLMLQDILGNS---SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR--DRFFLKSVVDLTASA-DLDLQEKALAA 330 (402)
Q Consensus 257 ~gGi~~L~~lL~s~---~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~--~~g~v~~Lv~lL~~~-d~dv~E~aL~a 330 (402)
..+..++..+.+.- ......|..+-.++..|..+ ....+. ..+++..++++...+ ||...-.+-..
T Consensus 76 ~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~--------~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l 147 (262)
T PF14500_consen 76 ESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLEN--------HREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKL 147 (262)
T ss_pred hhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHH--------hHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 11334444444321 12344566777777777642 122232 246777888887765 88877777766
Q ss_pred HHHHhcC
Q 015709 331 IKNLLQL 337 (402)
Q Consensus 331 L~~L~~~ 337 (402)
+..+...
T Consensus 148 ~~~i~~~ 154 (262)
T PF14500_consen 148 LKVILQE 154 (262)
T ss_pred HHHHHHh
Confidence 6665443
No 202
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=81.24 E-value=37 Score=39.28 Aligned_cols=141 Identities=16% Similarity=0.106 Sum_probs=84.2
Q ss_pred CCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhc---HHHHHh--cCc
Q 015709 185 HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG---QEMFYV--EAG 259 (402)
Q Consensus 185 s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~---~~~f~~--~gG 259 (402)
|=++.+|+.|+++|..++.-.|+ .+..+.+|+|++...+.+...|.-+.-|.+.++-+.... ...+.+ ..|
T Consensus 555 HWd~~irelaa~aL~~Ls~~~pk----~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~ 630 (1133)
T KOG1943|consen 555 HWDVKIRELAAYALHKLSLTEPK----YLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAG 630 (1133)
T ss_pred cccHHHHHHHHHHHHHHHHhhHH----hhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhh
Confidence 45799999999999999987665 344578999999998888887776666666655442211 111211 123
Q ss_pred HHHHHHh-----hcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHH
Q 015709 260 DLMLQDI-----LGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNL 334 (402)
Q Consensus 260 i~~L~~l-----L~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L 334 (402)
+.-++.- ++-+ ....++.-.+.++..+.. ........+.-.+|-..+.+.+..++ .+|+.+..++..+
T Consensus 631 l~~ii~~~~~~~~~rg-~~~lmr~~~~~~Ie~~s~-----s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l 703 (1133)
T KOG1943|consen 631 LLSIIPPICDRYFYRG-QGTLMRQATLKFIEQLSL-----SKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDL 703 (1133)
T ss_pred hhhhccHHHHHHhccc-hHHHHHHHHHHHHHHhhh-----ccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHH
Confidence 2111111 1111 112234444445554432 23344445556677777777775555 6778888877777
Q ss_pred hc
Q 015709 335 LQ 336 (402)
Q Consensus 335 ~~ 336 (402)
.+
T Consensus 704 ~s 705 (1133)
T KOG1943|consen 704 VS 705 (1133)
T ss_pred HH
Confidence 54
No 203
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=81.23 E-value=53 Score=33.46 Aligned_cols=83 Identities=13% Similarity=0.176 Sum_probs=55.2
Q ss_pred CCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHH-HHHHHHHHHHHHhcCChhcHHHHHhcCcHHHH
Q 015709 185 HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVE-EAVKALYTVSSLIRNNLAGQEMFYVEAGDLML 263 (402)
Q Consensus 185 s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~-vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L 263 (402)
+....+|..++--|++-+. +|..+..|..+|...++++.+...... .-.-+..++--++.........+...+-..++
T Consensus 33 ~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l~~~~~~~~ll 111 (361)
T PF07814_consen 33 SSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHLLLDRDSLRLL 111 (361)
T ss_pred CCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhhhhchhHHHHH
Confidence 3466789888888888887 688999999999999999999654432 32222223333333333444455555666676
Q ss_pred HHhhc
Q 015709 264 QDILG 268 (402)
Q Consensus 264 ~~lL~ 268 (402)
..++.
T Consensus 112 ~~Ll~ 116 (361)
T PF07814_consen 112 LKLLK 116 (361)
T ss_pred HHHhc
Confidence 77776
No 204
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=80.24 E-value=64 Score=31.85 Aligned_cols=164 Identities=16% Similarity=0.138 Sum_probs=86.4
Q ss_pred CCHHHHHHhcC--CCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcC-----
Q 015709 174 GGLSVLVGQLN--HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRN----- 246 (402)
Q Consensus 174 Ggl~~Li~lL~--s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~----- 246 (402)
..+++|+..|. +..|-||-.|+.++|.+.. | ..++.|-++.++...+++.....||-.+-..
T Consensus 67 ~Av~~l~~vl~desq~pmvRhEAaealga~~~--~---------~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~ 135 (289)
T KOG0567|consen 67 DAVPVLVEVLLDESQEPMVRHEAAEALGAIGD--P---------ESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDK 135 (289)
T ss_pred hhhHHHHHHhcccccchHHHHHHHHHHHhhcc--h---------hhHHHHHHHhcCCccccchHHHHHHHHHHHhhcccc
Confidence 35788888764 5679999999999999983 2 2344444445333334443333333222111
Q ss_pred ----------ChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcc----c-c--cCCCCc--------ch
Q 015709 247 ----------NLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ----L-E--NMHKVE--------PP 301 (402)
Q Consensus 247 ----------~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~----l-~--~~~~~~--------~~ 301 (402)
+|... ...+-+.-|...|.+.+...--|.+|+|.|.|+-.+. + + ..++.. .-
T Consensus 136 ~~~~~p~~SvdPa~p---~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~EeaI~al~~~l~~~SalfrhEvAfVfG 212 (289)
T KOG0567|consen 136 IANSSPYISVDPAPP---ANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTEEAINALIDGLADDSALFRHEVAFVFG 212 (289)
T ss_pred ccccCccccCCCCCc---cccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcHHHHHHHHHhcccchHHHHHHHHHHHh
Confidence 11111 1122344444444433222334556666666652110 0 0 000000 01
Q ss_pred hHHhCCcHHHHHHhhcC--CChHHHHHHHHHHHHHhcCChhhHHHHHhcCCcHH
Q 015709 302 LFRDRFFLKSVVDLTAS--ADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDT 353 (402)
Q Consensus 302 ~l~~~g~v~~Lv~lL~~--~d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~~ 353 (402)
.+++.-.++.|.+.|.. .++-+|.-|+.||..++.. +|..++....|=+.
T Consensus 213 Ql~s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e--~~~~vL~e~~~D~~ 264 (289)
T KOG0567|consen 213 QLQSPAAIPSLIKVLLDETEHPMVRHEAAEALGAIADE--DCVEVLKEYLGDEE 264 (289)
T ss_pred hccchhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH--HHHHHHHHHcCCcH
Confidence 12234557778877754 4788999999999999864 58777775555433
No 205
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=80.06 E-value=21 Score=32.07 Aligned_cols=114 Identities=15% Similarity=0.110 Sum_probs=79.0
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCc--HHHHHHhhcCCCccHHHHHHHHHHHHHHhhccccc
Q 015709 217 ALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG--DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLEN 294 (402)
Q Consensus 217 ~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gG--i~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~ 294 (402)
...++..++++.++..|-.++.-+..++..++ .+.|.++++ +..|..+|+.+ .+..++.-++..+..|.... .
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~-~~~~~~~~ai~~L~~l~~~~--~ 100 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKP-DPPSVLEAAIITLTRLFDLI--R 100 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHh--c
Confidence 45678899999888888889988888888764 355655553 36677778876 46778889999999988642 1
Q ss_pred CCCCcchhHHh---CCcHHHHHHhhcCCChHHHHHHHHHHHHHhcC
Q 015709 295 MHKVEPPLFRD---RFFLKSVVDLTASADLDLQEKALAAIKNLLQL 337 (402)
Q Consensus 295 ~~~~~~~~l~~---~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~ 337 (402)
..++....+.. .++++.++.++.. ..+.+.++.+|..+...
T Consensus 101 ~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~ 144 (165)
T PF08167_consen 101 GKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPH 144 (165)
T ss_pred CCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH
Confidence 22332222222 2455556666554 67889999999998874
No 206
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=80.04 E-value=5.5 Score=35.34 Aligned_cols=90 Identities=16% Similarity=0.180 Sum_probs=66.9
Q ss_pred HHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHh
Q 015709 236 ALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDL 315 (402)
Q Consensus 236 Al~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~l 315 (402)
.+-.|+-+++..+.+.. ..+..|..=|.++ ++.++..|+.++-.++. +.+..+...+.+..++..|+.+
T Consensus 20 ~il~icD~I~~~~~~~k-----~a~ral~KRl~~~--n~~v~l~AL~LLe~~vk----NCG~~fh~evask~Fl~eL~kl 88 (144)
T cd03568 20 LILDVCDKVKSDENGAK-----DCLKAIMKRLNHK--DPNVQLRALTLLDACAE----NCGKRFHQEVASRDFTQELKKL 88 (144)
T ss_pred HHHHHHHHHhcCCccHH-----HHHHHHHHHHcCC--CHHHHHHHHHHHHHHHH----HCCHHHHHHHhhHHHHHHHHHH
Confidence 34455656655433222 3455666667765 68899999999999886 3556677778889999999999
Q ss_pred hcC-CChHHHHHHHHHHHHHhc
Q 015709 316 TAS-ADLDLQEKALAAIKNLLQ 336 (402)
Q Consensus 316 L~~-~d~dv~E~aL~aL~~L~~ 336 (402)
+.. .+..++++++..+...+.
T Consensus 89 ~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 89 INDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred hcccCCHHHHHHHHHHHHHHHH
Confidence 988 699999999998887753
No 207
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=79.70 E-value=5.3 Score=45.09 Aligned_cols=106 Identities=17% Similarity=0.144 Sum_probs=80.4
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCC---HHHHHHHHHHHHHHhcCChhcH
Q 015709 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF---VEEAVKALYTVSSLIRNNLAGQ 251 (402)
Q Consensus 175 gl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~---~~vr~kAl~ALS~LiR~~~~~~ 251 (402)
.+|.|++.|.-++..+|..+..+|.....-.+..+..-+. -.+|.++.+=++.+ ..+|..|+-.+..+.|--|...
T Consensus 910 LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~-Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~ 988 (1030)
T KOG1967|consen 910 LLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLS-TLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKS 988 (1030)
T ss_pred HHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHh-HHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcc
Confidence 4677789999999999999999999998877777765554 36788888776654 4679999999999999655544
Q ss_pred HHHHhcCcHHHHHHhhcCCCccHHHHHHHHHH
Q 015709 252 EMFYVEAGDLMLQDILGNSSFEIRLHRKAVSL 283 (402)
Q Consensus 252 ~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~l 283 (402)
-.-+.-..+..|..+|.++ .-.+|..|+..
T Consensus 989 l~~fr~~Vl~al~k~LdDk--KRlVR~eAv~t 1018 (1030)
T KOG1967|consen 989 LLSFRPLVLRALIKILDDK--KRLVRKEAVDT 1018 (1030)
T ss_pred cccccHHHHHHhhhccCcH--HHHHHHHHHHH
Confidence 4444556788889999886 34466666544
No 208
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=79.39 E-value=18 Score=40.85 Aligned_cols=124 Identities=20% Similarity=0.254 Sum_probs=82.8
Q ss_pred chhHHHhcCCHHHHHHhcCC-----CCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhc----CCC----HHH
Q 015709 166 NANDLSKLGGLSVLVGQLNH-----PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK----SSF----VEE 232 (402)
Q Consensus 166 nA~~l~~lGgl~~Li~lL~s-----~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~----s~~----~~v 232 (402)
.++.|.+.||+..++++|.+ ...++-.....++..+++ -+.+++.+++.|+++.|++.+. ... +.+
T Consensus 109 ~~~v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i 187 (802)
T PF13764_consen 109 IASVLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEI 187 (802)
T ss_pred HHHHhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchH
Confidence 45667789999999999865 234566778888898886 4889999999999999998875 322 344
Q ss_pred HHHHHHHHHHHhcCC----hhcHHHHHhcCc--------HHHHHHhhcCC--CccHHHHHHHHHHHHHHhhc
Q 015709 233 AVKALYTVSSLIRNN----LAGQEMFYVEAG--------DLMLQDILGNS--SFEIRLHRKAVSLVGDLAKC 290 (402)
Q Consensus 233 r~kAl~ALS~LiR~~----~~~~~~f~~~gG--------i~~L~~lL~s~--~~d~klq~kA~~lL~~L~~~ 290 (402)
..+.+--+-.++..- ......+....| +..+.+.+.++ ..+.++..-.+.+|-+|+..
T Consensus 188 ~E~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G 259 (802)
T PF13764_consen 188 AEQLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYG 259 (802)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcC
Confidence 445444444443321 111122223344 77777777765 23567777788888888753
No 209
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=79.33 E-value=14 Score=35.62 Aligned_cols=97 Identities=15% Similarity=0.108 Sum_probs=70.6
Q ss_pred HHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcC-----CCCHHHHHHHHHHHHHHhcCCh-HhHHHHHHcCcHHHHHH
Q 015709 150 SQRALQELLILVEPIDNANDLSKLGGLSVLVGQLN-----HPDTDIRKISAWILGKASQNNP-LVQKQVLELGALSKLMK 223 (402)
Q Consensus 150 k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~-----s~~~~Ir~~Aa~vLg~~aqNNp-~~Q~~~le~g~L~~Ll~ 223 (402)
...||.-|.-++...+....|.+..----|..+|+ ++.+-+|..+.-+||.+++|.. .+-........+|.+++
T Consensus 117 vcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLr 196 (315)
T COG5209 117 VCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLR 196 (315)
T ss_pred HHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHH
Confidence 35788888878888888888877653223345553 2457799999999999999864 44555566789999999
Q ss_pred hhcCCCHHHHHHHHHHHHHHhcC
Q 015709 224 MVKSSFVEEAVKALYTVSSLIRN 246 (402)
Q Consensus 224 LL~s~~~~vr~kAl~ALS~LiR~ 246 (402)
+...+++--+.-|++-+.-++-+
T Consensus 197 Ime~gSElSktvaifI~qkil~d 219 (315)
T COG5209 197 IMELGSELSKTVAIFIFQKILGD 219 (315)
T ss_pred HHHhhhHHHHHHHHHHHHHHhcc
Confidence 99887765566777777666644
No 210
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=79.22 E-value=28 Score=39.50 Aligned_cols=126 Identities=17% Similarity=0.095 Sum_probs=87.1
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCC----HHHHHHHHHHHHHHhcCChHhHH
Q 015709 135 IAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPD----TDIRKISAWILGKASQNNPLVQK 210 (402)
Q Consensus 135 ~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~----~~Ir~~Aa~vLg~~aqNNp~~Q~ 210 (402)
..+.++...+.+|-....+.+-++++++..+|...+.. --+|.+++.|..++ +.+...|+.+|.++..|.|.---
T Consensus 575 ~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e-~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~ 653 (1005)
T KOG2274|consen 575 LTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQE-RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLP 653 (1005)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHH-HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCcc
Confidence 45566655555666666778888888886666666654 37999999998876 88999999999999998553222
Q ss_pred HHHHcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHH
Q 015709 211 QVLELGALSKLMKMVK-SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL 261 (402)
Q Consensus 211 ~~le~g~L~~Ll~LL~-s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~ 261 (402)
.-+-.-++|++.++.- +++.++-..+--+|++++....+....-...+|..
T Consensus 654 ~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~ 705 (1005)
T KOG2274|consen 654 NLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHN 705 (1005)
T ss_pred HHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCcc
Confidence 2222347888887754 44566777788888888877665444444445544
No 211
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=79.01 E-value=75 Score=36.92 Aligned_cols=154 Identities=13% Similarity=0.069 Sum_probs=94.6
Q ss_pred CCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCChhcHH
Q 015709 174 GGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQE 252 (402)
Q Consensus 174 Ggl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~-~~vr~kAl~ALS~LiR~~~~~~~ 252 (402)
+.+..|+.-|++.+..||+.||.-+|.+++.-|. .+-..++...++++.--+ ...=--|+-||+-+.+-.-.-..
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~----~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps 416 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPP----ELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS 416 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcH----HHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence 4566777788889999999999999999998882 222345667777665433 34444788888877654322222
Q ss_pred HHHhcCcHHHHHHhhcCC------CccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHH
Q 015709 253 MFYVEAGDLMLQDILGNS------SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEK 326 (402)
Q Consensus 253 ~f~~~gGi~~L~~lL~s~------~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~ 326 (402)
.+. ..++++...|.-+ ....-+|--|++++..++.. ..+...+-+++.=.-..|...+=..+..+|..
T Consensus 417 ~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Ra----ys~~~l~p~l~~L~s~LL~~AlFDrevncRRA 490 (1133)
T KOG1943|consen 417 LLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARA----YSPSDLKPVLQSLASALLIVALFDREVNCRRA 490 (1133)
T ss_pred HHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhc----CChhhhhHHHHHHHHHHHHHHhcCchhhHhHH
Confidence 221 3456666555421 11234788999999999864 23332221222111112222233457889999
Q ss_pred HHHHHHHHhcC
Q 015709 327 ALAAIKNLLQL 337 (402)
Q Consensus 327 aL~aL~~L~~~ 337 (402)
|..|+...+.-
T Consensus 491 AsAAlqE~VGR 501 (1133)
T KOG1943|consen 491 ASAALQENVGR 501 (1133)
T ss_pred HHHHHHHHhcc
Confidence 99999887765
No 212
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=78.37 E-value=35 Score=38.05 Aligned_cols=120 Identities=18% Similarity=0.117 Sum_probs=80.0
Q ss_pred HHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcC
Q 015709 239 TVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS 318 (402)
Q Consensus 239 ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~ 318 (402)
+|.+++-.++.....|++.||...+..+++.- +...+++++...+.+++... ...+....+..-.+ ..+-.++..
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f-~~~~~~~~il~~l~n~~~~~---~~~~~~~~~~~~~~-~~f~~~~~~ 568 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESF-DNEELHRKILGLLGNLAEVL---ELRELLMIFEFIDF-SVFKVLLNK 568 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhc-cchhHHHHHHHHHHHHHHHh---hhhhhhhHHHHHHH-HHHHHHHhh
Confidence 78888899999999999999999999999976 45669999999999998642 11122222222111 122224444
Q ss_pred C-ChHHHHHHHHHHHHHhcCChhhHHHHHhcCCcHHHHHHHHHHhHHhhh
Q 015709 319 A-DLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVML 367 (402)
Q Consensus 319 ~-d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~~~L~~L~~~~~~l~~ 367 (402)
- +.+.--.+...|..++.+++. ... .+.-.++.+++...+.....
T Consensus 569 w~~~ersY~~~siLa~ll~~~~~---~~~-~~~r~~~~~~l~e~i~~~~~ 614 (699)
T KOG3665|consen 569 WDSIERSYNAASILALLLSDSEK---TTE-CVFRNSVNELLVEAISRWLT 614 (699)
T ss_pred cchhhHHHHHHHHHHHHHhCCCc---Ccc-ccchHHHHHHHHHHhhccCc
Confidence 3 447778888888888887643 121 33345666777666666544
No 213
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=78.26 E-value=8.1 Score=33.79 Aligned_cols=107 Identities=18% Similarity=0.197 Sum_probs=71.8
Q ss_pred HHHHHHhhcCCC-HHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCC
Q 015709 218 LSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMH 296 (402)
Q Consensus 218 L~~Ll~LL~s~~-~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~ 296 (402)
+..+|.-..++. ++.--..+..|+-+++..+.+... ++..|..=|+++ +++++..|+.++-.++.+ .+
T Consensus 6 ~~~li~kATs~~~~~~Dw~~~l~icD~i~~~~~~~ke-----a~~~l~krl~~~--~~~vq~~aL~lld~lvkN----cg 74 (140)
T PF00790_consen 6 ITELIEKATSESLPSPDWSLILEICDLINSSPDGAKE-----AARALRKRLKHG--NPNVQLLALTLLDALVKN----CG 74 (140)
T ss_dssp HHHHHHHHT-TTSSS--HHHHHHHHHHHHTSTTHHHH-----HHHHHHHHHTTS--SHHHHHHHHHHHHHHHHH----SH
T ss_pred HHHHHHHHhCcCCCCCCHHHHHHHHHHHHcCCccHHH-----HHHHHHHHHhCC--CHHHHHHHHHHHHHHHHc----CC
Confidence 344444444432 122334555688888877544433 456677778875 788999999999998864 44
Q ss_pred CCcchhHHhCCcHHHHHHhhcCC-ChH---HHHHHHHHHHHHh
Q 015709 297 KVEPPLFRDRFFLKSVVDLTASA-DLD---LQEKALAAIKNLL 335 (402)
Q Consensus 297 ~~~~~~l~~~g~v~~Lv~lL~~~-d~d---v~E~aL~aL~~L~ 335 (402)
+.+...+.+..++..|..++.+. ... |+++++..|....
T Consensus 75 ~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 75 PRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWA 117 (140)
T ss_dssp HHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHH
Confidence 56667777788999999988754 333 8999998877665
No 214
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=77.50 E-value=44 Score=32.68 Aligned_cols=147 Identities=16% Similarity=0.105 Sum_probs=87.3
Q ss_pred chhHHHhcCCHHHHHHhcCCCC-----HHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCC-HHHHHHHHHH
Q 015709 166 NANDLSKLGGLSVLVGQLNHPD-----TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF-VEEAVKALYT 239 (402)
Q Consensus 166 nA~~l~~lGgl~~Li~lL~s~~-----~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~-~~vr~kAl~A 239 (402)
+.--+.-++.+|.++.-+.+++ +.+ ..+|..|+.+|.++. ...+..++....... .....-.--.
T Consensus 103 ~rll~~~la~LP~ll~~~d~~~~i~~~~~~-~~~A~~La~~a~~~~--------~~~La~il~~ya~~~fr~~~dfl~~v 173 (262)
T PF14225_consen 103 SRLLFLLLALLPRLLHAFDDPNPIQPDQEC-IEIAEALAQVAEAQG--------LPNLARILSSYAKGRFRDKDDFLSQV 173 (262)
T ss_pred ccHHHHHHHHHHHHHHHhcccccccccHHH-HHHHHHHHHHHHhCC--------CccHHHHHHHHHhcCCCCHHHHHHHH
Confidence 3334444567777777776666 344 466788888885432 345666666555432 1111112222
Q ss_pred HHHHhcCC-hhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcC
Q 015709 240 VSSLIRNN-LAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS 318 (402)
Q Consensus 240 LS~LiR~~-~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~ 318 (402)
++.+..++ |. .+...+..|..+|..+ ..-+|.+++..|..+..+. +-. .+ ....++..+..+|.+
T Consensus 174 ~~~l~~~f~P~-----~~~~~l~~Ll~lL~n~--~~w~~~~~L~iL~~ll~~~----d~~-~~--~~~dlispllrlL~t 239 (262)
T PF14225_consen 174 VSYLREAFFPD-----HEFQILTFLLGLLENG--PPWLRRKTLQILKVLLPHV----DMR-SP--HGADLISPLLRLLQT 239 (262)
T ss_pred HHHHHHHhCch-----hHHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHhccc----cCC-CC--cchHHHHHHHHHhCC
Confidence 23333333 32 1234566788888765 4568999999999998642 211 12 445688889999975
Q ss_pred CChHHHHHHHHHHHHHhcCC
Q 015709 319 ADLDLQEKALAAIKNLLQLR 338 (402)
Q Consensus 319 ~d~dv~E~aL~aL~~L~~~~ 338 (402)
+ ....|+..|....+.+
T Consensus 240 ~---~~~eAL~VLd~~v~~s 256 (262)
T PF14225_consen 240 D---LWMEALEVLDEIVTRS 256 (262)
T ss_pred c---cHHHHHHHHHHHHhhc
Confidence 4 6777887777766543
No 215
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=77.46 E-value=82 Score=31.56 Aligned_cols=161 Identities=12% Similarity=0.027 Sum_probs=105.7
Q ss_pred CHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhc-CChhcHHHHHhc--CcHHHH
Q 015709 187 DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIR-NNLAGQEMFYVE--AGDLML 263 (402)
Q Consensus 187 ~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR-~~~~~~~~f~~~--gGi~~L 263 (402)
+..++..+..++-++.++ -++.+.+.|++....+...++.-+.++++ +.......|... =..+.+
T Consensus 39 ~~~~~~~g~~l~~~iL~~------------~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l 106 (330)
T PF11707_consen 39 DLSFQSYGLELIRSILQN------------HLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSL 106 (330)
T ss_pred chhHHHHHHHHHHHHHHH------------HHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhH
Confidence 344777777776666653 16778888888887777789999999998 666666666653 244456
Q ss_pred HHhhcCCC----cc-------HHHHHHHHHHHHHHhhcccccCCCCcch-hHHhCCcHHHHHHhhcCCChHHHHHHHHHH
Q 015709 264 QDILGNSS----FE-------IRLHRKAVSLVGDLAKCQLENMHKVEPP-LFRDRFFLKSVVDLTASADLDLQEKALAAI 331 (402)
Q Consensus 264 ~~lL~s~~----~d-------~klq~kA~~lL~~L~~~~l~~~~~~~~~-~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL 331 (402)
..++.... .. ..+|...+.++-.++.. .++..+. .+.+.+.+..+..-|..|++++...++.+|
T Consensus 107 ~kll~~~~~~~~~~~~~~~~~~siR~~fI~F~Lsfl~~----~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l 182 (330)
T PF11707_consen 107 PKLLTPRKKEKEKDSESSKSKPSIRTNFIRFWLSFLSS----GDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETL 182 (330)
T ss_pred HHHhccccccccccccccccCcCHHHHHHHHHHHHHcc----CCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHH
Confidence 66653211 10 14677777777777753 3555544 455678899999999999999999999999
Q ss_pred HH-HhcCChhhHHHHHhcCCcHHHHHHHHHHhHH
Q 015709 332 KN-LLQLRTTEALVLKDFCGLDTALERLRQQLQE 364 (402)
Q Consensus 332 ~~-L~~~~~~~~~~~~~~~GL~~~L~~L~~~~~~ 364 (402)
.. ++.++ .-++..+-..=-+..|++|.+-|..
T Consensus 183 ~~~Vl~~~-~v~r~~K~~~fn~~~L~~l~~Ly~~ 215 (330)
T PF11707_consen 183 KDKVLKDS-SVSRSTKCKLFNEWTLSQLASLYSR 215 (330)
T ss_pred HHHhccCC-CCChhhhhhhcCHHHHHHHHHHhcc
Confidence 95 55554 3333333112224567777665543
No 216
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=77.40 E-value=7.4 Score=30.63 Aligned_cols=68 Identities=10% Similarity=0.117 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCc
Q 015709 233 AVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFF 308 (402)
Q Consensus 233 r~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~ 308 (402)
.+.|+||++++.. .+.+...+.+.+-++.++++..... ...+|--+.+.+.-++. ..+-.+.+.+.||
T Consensus 4 lKaaLWaighIgs-s~~G~~lL~~~~iv~~iv~~a~~s~-v~siRGT~fy~Lglis~------T~~G~~~L~~~gW 71 (73)
T PF14668_consen 4 LKAALWAIGHIGS-SPLGIQLLDESDIVEDIVKIAENSP-VLSIRGTCFYVLGLISS------TEEGAEILDELGW 71 (73)
T ss_pred HHHHHHHHHhHhc-ChHHHHHHhhcCHHHHHHHHHHhCC-ccchHHHHHHHHHHHhC------CHHHHHHHHHcCC
Confidence 4679999999965 6777887778899999999988542 44466666666665543 3455666667666
No 217
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=77.20 E-value=17 Score=30.42 Aligned_cols=91 Identities=13% Similarity=0.135 Sum_probs=62.7
Q ss_pred HHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHH
Q 015709 234 VKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVV 313 (402)
Q Consensus 234 ~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv 313 (402)
.+.+-.|+-+++.++.... ..+..|..-|.++ +++++.+|+.+|-+++.+ .++.+...+.+..++..++
T Consensus 18 ~~~i~~i~d~~~~~~~~~~-----~~~~~l~kRl~~~--~~~~~lkaL~lLe~lvkN----~g~~f~~~i~~~~~~~~l~ 86 (115)
T cd00197 18 WPLIMEICDLINETNVGPK-----EAVDAIKKRINNK--NPHVVLKALTLLEYCVKN----CGERFHQEVASNDFAVELL 86 (115)
T ss_pred HHHHHHHHHHHHCCCccHH-----HHHHHHHHHhcCC--cHHHHHHHHHHHHHHHHH----ccHHHHHHHHHhHHHHHHH
Confidence 3556667777766543322 2455666667765 789999999999999974 4666777777777777776
Q ss_pred Hh-----hc-CCChHHHHHHHHHHHHHh
Q 015709 314 DL-----TA-SADLDLQEKALAAIKNLL 335 (402)
Q Consensus 314 ~l-----L~-~~d~dv~E~aL~aL~~L~ 335 (402)
.. .. ..+..++++++..+...+
T Consensus 87 ~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 87 KFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred HhhccccccCCCChHHHHHHHHHHHHHh
Confidence 53 11 227789999998776653
No 218
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=76.89 E-value=7.7 Score=34.87 Aligned_cols=104 Identities=20% Similarity=0.161 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCC-CCchhHHHhcCCHHHHHHh-cCCCCHHHHHHHHHHHHHHhcCCh
Q 015709 129 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEP-IDNANDLSKLGGLSVLVGQ-LNHPDTDIRKISAWILGKASQNNP 206 (402)
Q Consensus 129 d~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~-iDnA~~l~~lGgl~~Li~l-L~s~~~~Ir~~Aa~vLg~~aqNNp 206 (402)
+++...++++.|.++... +....++-|.+-|.. .|-|- -+|.+.+..++.- ..++ .--+..|...||++--.-
T Consensus 20 ~a~Qt~~lielLk~~~~~--~~~~lldLL~~RV~PGVD~AA-~VKA~FL~~ia~g~~~~~-~Is~~~Av~LLGtM~GGY- 94 (154)
T PF11791_consen 20 NAEQTAELIELLKNPPAG--EEAFLLDLLTNRVPPGVDEAA-YVKAEFLAAIAKGEISSP-LISPAEAVELLGTMLGGY- 94 (154)
T ss_dssp -HHHHHHHHHHHHS--TT---HHHHHHHHHHSS--TT-HHH-HHHHHHHHHHHTTSS-BT-TB-HHHHHHHHTTS-SST-
T ss_pred CHHHHHHHHHHHhCCCCc--cHHHHHHHHHhcCCCCCChHH-HHHHHHHHHHHcCCccCC-CcCHHHHHHHHhhccCCC-
Confidence 345555666666665432 333445555555543 33332 2344444444432 1222 112567777777775321
Q ss_pred HhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC
Q 015709 207 LVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNN 247 (402)
Q Consensus 207 ~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~ 247 (402)
-+++|+.+|.+++.++...|.-+|++.+--+
T Consensus 95 ----------NV~~LI~~L~~~d~~lA~~Aa~aLk~TlLvy 125 (154)
T PF11791_consen 95 ----------NVQPLIDLLKSDDEELAEEAAEALKNTLLVY 125 (154)
T ss_dssp ----------THHHHHHGG--G-TTTHHHHHHHHHT--TTC
T ss_pred ----------cHHHHHHHHcCCcHHHHHHHHHHHHhhHHHH
Confidence 2788888888777778888888888755433
No 219
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=76.55 E-value=8.7 Score=31.45 Aligned_cols=68 Identities=12% Similarity=0.112 Sum_probs=52.7
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015709 218 LSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (402)
Q Consensus 218 L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~ 289 (402)
+...+..++++.+++|..++.-|+.+++... .......+.+.++...|+++ |+-+-..|+..+..|+.
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~--DsyVYL~aI~~L~~La~ 72 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDE--DSYVYLNAIKGLAALAD 72 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCC--CchHHHHHHHHHHHHHH
Confidence 4566778888888999999999999999876 11222346677788888876 56688899999999984
No 220
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=76.22 E-value=4.8 Score=45.41 Aligned_cols=151 Identities=15% Similarity=0.117 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHccC--------CCCchhHHHhcCCHHHHHHhcCC--------CCHHHHHHHHHHHHHHhcCChHhHHHH
Q 015709 149 DSQRALQELLILVE--------PIDNANDLSKLGGLSVLVGQLNH--------PDTDIRKISAWILGKASQNNPLVQKQV 212 (402)
Q Consensus 149 ~k~~AL~~L~~Lve--------~iDnA~~l~~lGgl~~Li~lL~s--------~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~ 212 (402)
..+..+..++.+++ +-.-|++|.++||+..++.+..- +..++-.+|..+|.-+. .-|+.|.++
T Consensus 568 ~~e~I~~q~e~~~~~gp~f~~~~w~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t-~iP~iq~~L 646 (1516)
T KOG1832|consen 568 AVEAIFLQLEKDRRLGPTFVKAQWPAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVT-SIPDIQKAL 646 (1516)
T ss_pred HHHHHHHHHHHHHHhChhhhhhcchHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeE-ecchHHHHH
Confidence 34444555554443 34578999999999999987642 34677778888876555 468888887
Q ss_pred HHc--------CcHHHHHHhhcCC----CHHHHHHHHHHHHHHhcCChh-------------------------------
Q 015709 213 LEL--------GALSKLMKMVKSS----FVEEAVKALYTVSSLIRNNLA------------------------------- 249 (402)
Q Consensus 213 le~--------g~L~~Ll~LL~s~----~~~vr~kAl~ALS~LiR~~~~------------------------------- 249 (402)
... .||..+++-..-. +++++..|+..|-+++..-|.
T Consensus 647 a~~~~~n~~aydGiaIiL~~a~g~~~i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~ 726 (1516)
T KOG1832|consen 647 AHATLSNNRAYDGIAIILDAANGSNSIVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQ 726 (1516)
T ss_pred HHHHhhcccccCceEEEeecccccccccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHH
Confidence 764 3555555544322 467788888877776654322
Q ss_pred ----cHHHHHhcCcHHHHHHhhcCC---CccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhC
Q 015709 250 ----GQEMFYVEAGDLMLQDILGNS---SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDR 306 (402)
Q Consensus 250 ----~~~~f~~~gGi~~L~~lL~s~---~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~ 306 (402)
...++...+||.+|+.+|+.. .....+|.-|+..|.-|++ ++..++.+.+-
T Consensus 727 ~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR------~~tVrQIltKL 784 (1516)
T KOG1832|consen 727 VLRQMWEAVRGNDGIKILLKLLQYKNPPTTADCIRALACRVLLGLAR------DDTVRQILTKL 784 (1516)
T ss_pred HHHHHHHHHhcCccHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccc------CcHHHHHHHhC
Confidence 233445678999999999853 2234578888888888875 45666665543
No 221
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=76.17 E-value=13 Score=37.48 Aligned_cols=63 Identities=13% Similarity=0.174 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHhcCChHhHHHHHHcC--cHHHHHHhhcCCC---HHHHHHHHHHHHHHhcCChhcHH
Q 015709 189 DIRKISAWILGKASQNNPLVQKQVLELG--ALSKLMKMVKSSF---VEEAVKALYTVSSLIRNNLAGQE 252 (402)
Q Consensus 189 ~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g--~L~~Ll~LL~s~~---~~vr~kAl~ALS~LiR~~~~~~~ 252 (402)
.+|..|..++..+. .++..+..+++.+ .+..|+++++.+. ..++..|+++|.+++++..-..+
T Consensus 237 ~iRllAi~~l~~~~-~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~ 304 (329)
T PF06012_consen 237 QIRLLAIANLVYIH-PESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSD 304 (329)
T ss_pred HHHHHHHHHHHhhC-CCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHH
Confidence 46777777776666 5677888899888 9999999999764 46799999999999987654333
No 222
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=75.93 E-value=15 Score=40.93 Aligned_cols=116 Identities=14% Similarity=0.105 Sum_probs=58.2
Q ss_pred CCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHH
Q 015709 185 HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS-FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLML 263 (402)
Q Consensus 185 s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~-~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L 263 (402)
..|.+||..|.-.||-++-..|. .+|..+.+|+.+ ++-||.-|..||+=.|.+.-. .. .+.+|
T Consensus 566 D~nDDVrRaAVialGFVl~~dp~---------~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~-~e------Ai~lL 629 (929)
T KOG2062|consen 566 DVNDDVRRAAVIALGFVLFRDPE---------QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL-KE------AINLL 629 (929)
T ss_pred ccchHHHHHHHHHheeeEecChh---------hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc-HH------HHHHH
Confidence 35566666666666666655442 356666666543 356677666666655444211 11 23344
Q ss_pred HHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHH
Q 015709 264 QDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQ 324 (402)
Q Consensus 264 ~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~ 324 (402)
-.+.+++ .+ -+|.-|+-++.-+..++ ++...+.. .|+.+.+.+++...+.+..
T Consensus 630 epl~~D~-~~-fVRQgAlIa~amIm~Q~----t~~~~pkv--~~frk~l~kvI~dKhEd~~ 682 (929)
T KOG2062|consen 630 EPLTSDP-VD-FVRQGALIALAMIMIQQ----TEQLCPKV--NGFRKQLEKVINDKHEDGM 682 (929)
T ss_pred hhhhcCh-HH-HHHHHHHHHHHHHHHhc----ccccCchH--HHHHHHHHHHhhhhhhHHH
Confidence 4444443 22 35666666665555443 22323222 3445555555555544433
No 223
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=75.93 E-value=26 Score=40.76 Aligned_cols=140 Identities=15% Similarity=0.142 Sum_probs=95.5
Q ss_pred cCCHHHHHH-hcC----CCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcC
Q 015709 173 LGGLSVLVG-QLN----HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK-SSFVEEAVKALYTVSSLIRN 246 (402)
Q Consensus 173 lGgl~~Li~-lL~----s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~-s~~~~vr~kAl~ALS~LiR~ 246 (402)
+|-+.|++- ..+ .++|++|..|.-++|.+.-=. ..|.+ -.+|.|+.++. ++++-+|..++-|+|-++=-
T Consensus 917 Lg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iS----a~fce-s~l~llftimeksp~p~IRsN~VvalgDlav~ 991 (1251)
T KOG0414|consen 917 LGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCIS----AEFCE-SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVR 991 (1251)
T ss_pred HHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhh----HHHHH-HHHHHHHHHHhcCCCceeeecchheccchhhh
Confidence 455666654 443 367999999999999987421 12222 24799999998 45577899999999987766
Q ss_pred ChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHH
Q 015709 247 NLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEK 326 (402)
Q Consensus 247 ~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~ 326 (402)
+|.-.+.+- +.|-.-|.+. ++.+|+.|.-.+++|... ..+.-.|.+..++-+|..++..+++-
T Consensus 992 fpnlie~~T-----~~Ly~rL~D~--~~~vRkta~lvlshLILn----------dmiKVKGql~eMA~cl~D~~~~Isdl 1054 (1251)
T KOG0414|consen 992 FPNLIEPWT-----EHLYRRLRDE--SPSVRKTALLVLSHLILN----------DMIKVKGQLSEMALCLEDPNAEISDL 1054 (1251)
T ss_pred cccccchhh-----HHHHHHhcCc--cHHHHHHHHHHHHHHHHh----------hhhHhcccHHHHHHHhcCCcHHHHHH
Confidence 776555442 2344556665 567899999999999853 13344677777777777777777776
Q ss_pred HHHHHHHH
Q 015709 327 ALAAIKNL 334 (402)
Q Consensus 327 aL~aL~~L 334 (402)
|=....-|
T Consensus 1055 Ak~FF~El 1062 (1251)
T KOG0414|consen 1055 AKSFFKEL 1062 (1251)
T ss_pred HHHHHHHh
Confidence 66433333
No 224
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=75.82 E-value=29 Score=37.75 Aligned_cols=147 Identities=14% Similarity=0.120 Sum_probs=76.3
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhc-CCCCHHHHHHHHHHHHHHhcCChHhH
Q 015709 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQL-NHPDTDIRKISAWILGKASQNNPLVQ 209 (402)
Q Consensus 131 ~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL-~s~~~~Ir~~Aa~vLg~~aqNNp~~Q 209 (402)
.+|+.+.....+-+ .+-|..+.+.++-|+-......+. -+.-|.+.| +...-+.+..+..+|..+..|.|..+
T Consensus 375 rLv~~I~sfvhD~S--D~FKiI~ida~rsLsl~Fp~k~~s----~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~sk 448 (898)
T COG5240 375 RLVNLIPSFVHDMS--DGFKIIAIDALRSLSLLFPSKKLS----YLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSK 448 (898)
T ss_pred HHHHHHHHHHHhhc--cCceEEeHHHHHHHHhhCcHHHHH----HHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHH
Confidence 45555555555432 234555555555544333222111 122233322 23344555555556666666555555
Q ss_pred HHHHHc-----------CcHHHHHHhhcC---------------------CCHHHHHHHHHHHHHHhcCChhcHHHHHhc
Q 015709 210 KQVLEL-----------GALSKLMKMVKS---------------------SFVEEAVKALYTVSSLIRNNLAGQEMFYVE 257 (402)
Q Consensus 210 ~~~le~-----------g~L~~Ll~LL~s---------------------~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~ 257 (402)
+.+++. ...-.++.+|-. ++.-+|..|+.|||-..-+-. +.|.-.
T Consensus 449 EraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~---d~~~~~ 525 (898)
T COG5240 449 ERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNIS---DVVSPQ 525 (898)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcc---ccccHH
Confidence 555442 111223333322 123357788888876543311 123333
Q ss_pred CcHHHHHHhhcCCCccHHHHHHHHHHHHHHh
Q 015709 258 AGDLMLQDILGNSSFEIRLHRKAVSLVGDLA 288 (402)
Q Consensus 258 gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~ 288 (402)
.....|.+|+.+. |..+|-+|.+++.+|-
T Consensus 526 sv~~~lkRclnD~--DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 526 SVENALKRCLNDQ--DDEVRDRASFLLRNMR 554 (898)
T ss_pred HHHHHHHHHhhcc--cHHHHHHHHHHHHhhh
Confidence 4566788999875 5679999999999984
No 225
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=75.81 E-value=58 Score=36.08 Aligned_cols=134 Identities=15% Similarity=0.103 Sum_probs=92.7
Q ss_pred hcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCChhc
Q 015709 172 KLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNLAG 250 (402)
Q Consensus 172 ~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s-~~~~vr~kAl~ALS~LiR~~~~~ 250 (402)
+-..+|.|...++..+..+|..+..++.+++.-=+ ..+++.-.+|.|-.+... .+..++..++-|+..++ ..
T Consensus 387 ~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~----q~ 459 (700)
T KOG2137|consen 387 KEKILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI----QR 459 (700)
T ss_pred HHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH----HH
Confidence 34567888888899999999999999999996433 445666678888877544 34678999999999998 33
Q ss_pred HHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCC
Q 015709 251 QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASAD 320 (402)
Q Consensus 251 ~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d 320 (402)
++.+--..-+.++..+.+.. ++.+......+...+..- .+.- ..+.-+.+++.++-+...+.
T Consensus 460 lD~~~v~d~~lpi~~~~~~~--dp~iv~~~~~i~~~l~~~-----~~~g-~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 460 LDKAAVLDELLPILKCIKTR--DPAIVMGFLRIYEALALI-----IYSG-VEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred HHHHHhHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHhh-----cccc-eeeehhhhhhhhhhhhhccc
Confidence 44443344555666666654 667888888888877642 1111 33444667777777665553
No 226
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=75.37 E-value=19 Score=42.05 Aligned_cols=105 Identities=17% Similarity=0.098 Sum_probs=70.2
Q ss_pred HhcCC-CCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHH---HhcCChhcHHHHHh
Q 015709 181 GQLNH-PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSS---LIRNNLAGQEMFYV 256 (402)
Q Consensus 181 ~lL~s-~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~---LiR~~~~~~~~f~~ 256 (402)
.++.+ ....-|..|...|..++++-.. +..+ --++|.++.++.++...||..|+-+|.. ++|..++.-..++-
T Consensus 429 s~IR~lk~~~tK~~ALeLl~~lS~~i~d--e~~L-DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~ 505 (1431)
T KOG1240|consen 429 SCIRALKTIQTKLAALELLQELSTYIDD--EVKL-DRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFP 505 (1431)
T ss_pred HHHHhhhcchhHHHHHHHHHHHhhhcch--HHHH-hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhH
Confidence 44433 4567788899999999886321 1122 2478999999999889999988888775 56665554333333
Q ss_pred cCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015709 257 EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (402)
Q Consensus 257 ~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~ 289 (402)
.=-++.|.+++.+. +...+|.--+..|..|+.
T Consensus 506 eYlfP~L~~l~~d~-~~~~vRiayAsnla~LA~ 537 (1431)
T KOG1240|consen 506 EYLFPHLNHLLNDS-SAQIVRIAYASNLAQLAK 537 (1431)
T ss_pred hhhhhhhHhhhccC-ccceehhhHHhhHHHHHH
Confidence 34677888888774 244566666666666654
No 227
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=75.11 E-value=47 Score=37.16 Aligned_cols=154 Identities=16% Similarity=0.109 Sum_probs=96.3
Q ss_pred cCCHHHHHH-hcCCCCHHHHHHHHHHHHHHh--cCChHhHHHHHHcCcHHHHHHh-hcCCCHHHHHHHHHHHHHHhcCCh
Q 015709 173 LGGLSVLVG-QLNHPDTDIRKISAWILGKAS--QNNPLVQKQVLELGALSKLMKM-VKSSFVEEAVKALYTVSSLIRNNL 248 (402)
Q Consensus 173 lGgl~~Li~-lL~s~~~~Ir~~Aa~vLg~~a--qNNp~~Q~~~le~g~L~~Ll~L-L~s~~~~vr~kAl~ALS~LiR~~~ 248 (402)
.+...++|. ++.+.+|-+|......++-+- ..| .+++..|+.. +++.+..||+.|..||+-++-..|
T Consensus 517 qe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgn---------nkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp 587 (929)
T KOG2062|consen 517 QEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGN---------NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDP 587 (929)
T ss_pred hhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCc---------hhhHHHhhcccccccchHHHHHHHHHheeeEecCh
Confidence 345667775 557788999987776665442 222 3578888888 555568999999999998766555
Q ss_pred hcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCC-ChHHHHHH
Q 015709 249 AGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKA 327 (402)
Q Consensus 249 ~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~dv~E~a 327 (402)
.. .+-.+.+|... .++-+|--|+.+|.--|.. ....+. -.|++-|.++ ..-||.-|
T Consensus 588 ~~---------~~s~V~lLses-~N~HVRyGaA~ALGIaCAG------tG~~eA-------i~lLepl~~D~~~fVRQgA 644 (929)
T KOG2062|consen 588 EQ---------LPSTVSLLSES-YNPHVRYGAAMALGIACAG------TGLKEA-------INLLEPLTSDPVDFVRQGA 644 (929)
T ss_pred hh---------chHHHHHHhhh-cChhhhhhHHHHHhhhhcC------CCcHHH-------HHHHhhhhcChHHHHHHHH
Confidence 42 23345666644 4677899999999977753 222222 1334444444 33456667
Q ss_pred HHHHHHHhcCChhhHHHHHhcCCcHHHHHHHHHHhHHhhh
Q 015709 328 LAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVML 367 (402)
Q Consensus 328 L~aL~~L~~~~~~~~~~~~~~~GL~~~L~~L~~~~~~l~~ 367 (402)
+-++.-++... ...+-|.....+++|...+.
T Consensus 645 lIa~amIm~Q~---------t~~~~pkv~~frk~l~kvI~ 675 (929)
T KOG2062|consen 645 LIALAMIMIQQ---------TEQLCPKVNGFRKQLEKVIN 675 (929)
T ss_pred HHHHHHHHHhc---------ccccCchHHHHHHHHHHHhh
Confidence 76666654321 22344556666777777765
No 228
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=75.06 E-value=45 Score=33.81 Aligned_cols=139 Identities=11% Similarity=0.046 Sum_probs=101.7
Q ss_pred HHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcC---cHHHHHHhhc
Q 015709 150 SQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELG---ALSKLMKMVK 226 (402)
Q Consensus 150 k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g---~L~~Ll~LL~ 226 (402)
-..+-..|.+++..-.-|.-+....-+..+.++...++=+|-.-|...+..+-..|+..-..++..+ .+...-+|+.
T Consensus 140 al~~g~mlRec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~ 219 (335)
T PF08569_consen 140 ALNCGDMLRECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLE 219 (335)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT
T ss_pred cchHHHHHHHHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3444455666666555566555566666788888899999999999999999999998877777765 4667888999
Q ss_pred CCCHHHHHHHHHHHHHHhcC--ChhcHHHHHh-cCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015709 227 SSFVEEAVKALYTVSSLIRN--NLAGQEMFYV-EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (402)
Q Consensus 227 s~~~~vr~kAl~ALS~LiR~--~~~~~~~f~~-~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~ 290 (402)
+++=-+|..++--|+.++-+ |-.....++. ..-+..++.+|+++ ...+|..|...+.-++.+
T Consensus 220 s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~--sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 220 SSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDK--SKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp -SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S---HHHHHHHHHHHHHHHH-
T ss_pred CCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCc--chhhhHHHHHHHHHHHhC
Confidence 98878899999999998754 3333344443 45778888999987 455899998888877753
No 229
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=74.80 E-value=29 Score=32.29 Aligned_cols=126 Identities=10% Similarity=0.057 Sum_probs=75.8
Q ss_pred CCCCHHHHHHHHHHHHHHhcCChHhHHHH---------------HHcCcHHHHHHhhcCCC------HHHHHHHHHHHHH
Q 015709 184 NHPDTDIRKISAWILGKASQNNPLVQKQV---------------LELGALSKLMKMVKSSF------VEEAVKALYTVSS 242 (402)
Q Consensus 184 ~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~---------------le~g~L~~Ll~LL~s~~------~~vr~kAl~ALS~ 242 (402)
..++...-..++.+|+|+++...-+...+ .+...+..|+..+..+. ..---...+-++|
T Consensus 5 ~~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~N 84 (192)
T PF04063_consen 5 TDPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLAN 84 (192)
T ss_pred cCCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHH
Confidence 34444556678888888887644333222 22346888888887621 1223467888899
Q ss_pred HhcCChhcHHHHHhc--Cc--HHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHh---CCcHHHHHHh
Q 015709 243 LIRNNLAGQEMFYVE--AG--DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD---RFFLKSVVDL 315 (402)
Q Consensus 243 LiR~~~~~~~~f~~~--gG--i~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~---~g~v~~Lv~l 315 (402)
+.+ .+.+++.|++. +. +..|...+.+. +.-=|.=++.+|.|.|... ..-..+.. -++++.|.-.
T Consensus 85 lS~-~~~gR~~~l~~~~~~~~l~kLl~ft~~~--s~iRR~Gva~~IrNccFd~------~~H~~LL~~~~~~iLp~LLlP 155 (192)
T PF04063_consen 85 LSQ-LPEGRQFFLDPQRYDGPLQKLLPFTEHK--SVIRRGGVAGTIRNCCFDT------DSHEWLLSDDEVDILPYLLLP 155 (192)
T ss_pred hcC-CHHHHHHHhCchhhhhHHHHHHHHhccC--cHHHHHHHHHHHHHhhccH------hHHHHhcCchhhhhHHHHHhh
Confidence 987 58889988863 23 45555556655 3334556788999999742 22234433 2455555555
Q ss_pred hcC
Q 015709 316 TAS 318 (402)
Q Consensus 316 L~~ 318 (402)
|..
T Consensus 156 LaG 158 (192)
T PF04063_consen 156 LAG 158 (192)
T ss_pred ccC
Confidence 543
No 230
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=74.61 E-value=23 Score=39.47 Aligned_cols=133 Identities=11% Similarity=0.122 Sum_probs=86.7
Q ss_pred HHHHHHHHccCCCCc-hhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHc-CcHHHHHHhhcCCC
Q 015709 152 RALQELLILVEPIDN-ANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL-GALSKLMKMVKSSF 229 (402)
Q Consensus 152 ~AL~~L~~Lve~iDn-A~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~-g~L~~Ll~LL~s~~ 229 (402)
.+|..+.+|...-++ ...+.+--+++-+-.++..+++-+|..|+.++.++.-.+--.-..+.++ ..++....++....
T Consensus 561 E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~ 640 (748)
T KOG4151|consen 561 EALEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVAD 640 (748)
T ss_pred HHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhh
Confidence 344444444333222 2246666666666667778899999999999999998655555555663 45666666655533
Q ss_pred HHHHHH---HHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHh
Q 015709 230 VEEAVK---ALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLA 288 (402)
Q Consensus 230 ~~vr~k---Al~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~ 288 (402)
...... ++-+|.+++.++.+. ..--..|...++.++.+. +..+|.+.+..+.++.
T Consensus 641 E~~~lA~a~a~a~I~sv~~n~c~~--~~~~~~~~e~~~~~i~~~--~~~~qhrgl~~~ln~~ 698 (748)
T KOG4151|consen 641 EKFELAGAGALAAITSVVENHCSR--ILELLEWLEILVRAIQDE--DDEIQHRGLVIILNLF 698 (748)
T ss_pred hHHhhhccccccchhhcchhhhhh--HHHhhcchHHHHHhhcCc--hhhhhhhhhhhhhhHH
Confidence 333332 333366676666554 223468999999999986 6678999999998854
No 231
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=73.03 E-value=39 Score=36.05 Aligned_cols=122 Identities=13% Similarity=0.205 Sum_probs=85.5
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCC---hhcHHHHHhcCcHHHHHHhhcCCC-----ccHHHHHHHHHHHHHHhh
Q 015709 218 LSKLMKMVKSSFVEEAVKALYTVSSLIRNN---LAGQEMFYVEAGDLMLQDILGNSS-----FEIRLHRKAVSLVGDLAK 289 (402)
Q Consensus 218 L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~---~~~~~~f~~~gGi~~L~~lL~s~~-----~d~klq~kA~~lL~~L~~ 289 (402)
...+..++...+++.|-.|+.-+.-.+++. ..+...++++=|+..+-++|.+++ .|.-.+.-++.++..+|+
T Consensus 13 ~~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~ 92 (698)
T KOG2611|consen 13 LDDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCR 92 (698)
T ss_pred hhhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhC
Confidence 344677788778888999999999999873 334666889999999999997532 244467778889998886
Q ss_pred cccccCCCCcchhHHhCCcHHHHHHhhcCC-ChH------HHHHHHHHHHHHhcCChhhHHHH
Q 015709 290 CQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLD------LQEKALAAIKNLLQLRTTEALVL 345 (402)
Q Consensus 290 ~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~d------v~E~aL~aL~~L~~~~~~~~~~~ 345 (402)
.. .-..-+.++ .-||.+.+.+... |+| +.+.+-.+|..++......+.-+
T Consensus 93 ~p----ElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Li 149 (698)
T KOG2611|consen 93 VP----ELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLI 149 (698)
T ss_pred Ch----hhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHH
Confidence 31 111122232 3467777777654 666 88999999999988865444444
No 232
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=73.00 E-value=1.5e+02 Score=32.51 Aligned_cols=154 Identities=10% Similarity=-0.072 Sum_probs=92.2
Q ss_pred hcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHh-cCcH
Q 015709 182 QLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYV-EAGD 260 (402)
Q Consensus 182 lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~-~gGi 260 (402)
-+.+++-.=|..|+.++|++...-.+.+-.-+-..++|-++.+.+++..-++..+.|+++.+.-+-+.....-.. .+-+
T Consensus 374 ni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~v 453 (858)
T COG5215 374 NIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEV 453 (858)
T ss_pred hccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHH
Confidence 456677778899999999999875555555555678999998888666667778888888776554432222111 1122
Q ss_pred HHHHHhhcCCCccHHHHHHHHHHHHHHhhcccc--cCCCCcchhHHhCCcHHHHHHhh--cCCChHHHHHHHHHHHHHhc
Q 015709 261 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLE--NMHKVEPPLFRDRFFLKSVVDLT--ASADLDLQEKALAAIKNLLQ 336 (402)
Q Consensus 261 ~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~--~~~~~~~~~l~~~g~v~~Lv~lL--~~~d~dv~E~aL~aL~~L~~ 336 (402)
+....-|.+ .+++-....|.+-+|+.+-.+ +..++....+- ..++..|++.- ...+...|-..-.+|..|..
T Consensus 454 sa~liGl~D---~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY-~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~ 529 (858)
T COG5215 454 SASLIGLMD---CPFRSINCSWRKENLVDHIAKAVREVESFLAKFY-LAILNALVKGTELALNESNLRVSLFSALGTLIL 529 (858)
T ss_pred HHHHhhhhc---cchHHhhhHHHHHhHHHhhhhhhccccchhHHHH-HHHHHHHHHHHHhhccchhHHHHHHHHHHHHHh
Confidence 222222333 467888999999999865311 11112111111 12333333322 12356788888888888877
Q ss_pred CCh
Q 015709 337 LRT 339 (402)
Q Consensus 337 ~~~ 339 (402)
..+
T Consensus 530 ~~~ 532 (858)
T COG5215 530 ICP 532 (858)
T ss_pred hcc
Confidence 644
No 233
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=72.66 E-value=69 Score=36.64 Aligned_cols=208 Identities=13% Similarity=0.130 Sum_probs=122.9
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCC----Cchh--HHHh----cCCHHHHHHhc
Q 015709 114 QMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPI----DNAN--DLSK----LGGLSVLVGQL 183 (402)
Q Consensus 114 ~~~L~ea~~~l~~~~d~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~i----DnA~--~l~~----lGgl~~Li~lL 183 (402)
..|+.+++=.=+-|.-.++-++.++.|.+++.- .--..+++.+-.=+... ..|. -+.+ ..-+|.|++..
T Consensus 798 l~Wv~KaLl~R~~~~s~~ia~klld~Ls~~~~g-~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~ 876 (1030)
T KOG1967|consen 798 LAWVTKALLLRNHPESSEIAEKLLDLLSGPSTG-SPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKF 876 (1030)
T ss_pred HHHHHHHHHHcCCcccchHHHHHHHhcCCcccc-chHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHh
Confidence 456655542213444556777788888776532 11222333222111110 0111 1333 23466777777
Q ss_pred CCCCHHHHHHHHHHHHHHhcCChHhHHHHHHc-CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHH
Q 015709 184 NHPDTDIRKISAWILGKASQNNPLVQKQVLEL-GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLM 262 (402)
Q Consensus 184 ~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~-g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~ 262 (402)
......+|..-...|+++-.|-|+ |...=+. ..+|.|++-|+-.+..+|..++..|.-++..++.-+..-+ .--++.
T Consensus 877 ~t~~~~~K~~yl~~LshVl~~vP~-~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~-~Tlvp~ 954 (1030)
T KOG1967|consen 877 ETAPGSQKHNYLEALSHVLTNVPK-QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHL-STLVPY 954 (1030)
T ss_pred ccCCccchhHHHHHHHHHHhcCCH-HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHH-hHHHHH
Confidence 767778899999999999998886 3322222 4678888999888888999999999987776665444322 123455
Q ss_pred HHHhhcCCCc-cHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHH
Q 015709 263 LQDILGNSSF-EIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALA 329 (402)
Q Consensus 263 L~~lL~s~~~-d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~ 329 (402)
+..+=.+++. ..-+|.-|+.++..|.+-. |...-.-....++..++..|..+.--+|+.|.+
T Consensus 955 lLsls~~~~n~~~~VR~~ALqcL~aL~~~~-----P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~ 1017 (1030)
T KOG1967|consen 955 LLSLSSDNDNNMMVVREDALQCLNALTRRL-----PTKSLLSFRPLVLRALIKILDDKKRLVRKEAVD 1017 (1030)
T ss_pred HHhcCCCCCcchhHHHHHHHHHHHHHhccC-----CCcccccccHHHHHHhhhccCcHHHHHHHHHHH
Confidence 5554444322 2668889999999887521 111111123456777777777666667777764
No 234
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=72.26 E-value=28 Score=38.70 Aligned_cols=105 Identities=14% Similarity=0.128 Sum_probs=73.2
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHH-HHHHc------CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC-
Q 015709 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK-QVLEL------GALSKLMKMVKSSFVEEAVKALYTVSSLIRNN- 247 (402)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~-~~le~------g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~- 247 (402)
+..++.+|++.+-.+|..-..+.|+++..- .|+ ..+++ ..+..|..-+.+..+-+|.||+..++.+.--+
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~--~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~s 378 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHF--KKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNS 378 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHH--hcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcc
Confidence 566788999999999999999999998531 111 12221 23444555556667888999999999987432
Q ss_pred --hhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015709 248 --LAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (402)
Q Consensus 248 --~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~ 289 (402)
+...+. -+...+..+++. ..-+|++|+.+++-|..
T Consensus 379 k~~~~r~e-----v~~lv~r~lqDr--ss~VRrnaikl~SkLL~ 415 (1128)
T COG5098 379 KTVGRRHE-----VIRLVGRRLQDR--SSVVRRNAIKLCSKLLM 415 (1128)
T ss_pred cccchHHH-----HHHHHHHHhhhh--hHHHHHHHHHHHHHHHh
Confidence 222333 455667778876 34589999999999875
No 235
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=72.10 E-value=1.8e+02 Score=32.91 Aligned_cols=89 Identities=8% Similarity=0.091 Sum_probs=62.7
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHH
Q 015709 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF 254 (402)
Q Consensus 175 gl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f 254 (402)
.++.++..++++.-=+|.+||..++++... ..+..+-..+.+....++++..-+++..|.-|++.+++|.. ...-
T Consensus 461 iv~hv~P~f~s~ygfL~Srace~is~~eeD---fkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q--~h~k 535 (970)
T COG5656 461 IVNHVIPAFRSNYGFLKSRACEFISTIEED---FKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQ--SHEK 535 (970)
T ss_pred HHHHhhHhhcCcccchHHHHHHHHHHHHHh---cccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchh--hhHH
Confidence 455566677788888999999999999432 33334444566777788888777899999999999999862 3333
Q ss_pred HhcCcHHHHHHhhc
Q 015709 255 YVEAGDLMLQDILG 268 (402)
Q Consensus 255 ~~~gGi~~L~~lL~ 268 (402)
+.+...+.+..+|+
T Consensus 536 ~sahVp~tmekLLs 549 (970)
T COG5656 536 FSAHVPETMEKLLS 549 (970)
T ss_pred HHhhhhHHHHHHHH
Confidence 44555555555554
No 236
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=71.66 E-value=12 Score=31.82 Aligned_cols=40 Identities=25% Similarity=0.395 Sum_probs=34.7
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHc
Q 015709 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL 215 (402)
Q Consensus 175 gl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~ 215 (402)
|++.|+..|..++++|...|..+|-.++..+ .+.+.++..
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~-~~le~~v~~ 48 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK-EYLEYLVSL 48 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch-hhHHHHHHc
Confidence 6889999999999999999999999999876 666666654
No 237
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=71.26 E-value=33 Score=28.51 Aligned_cols=84 Identities=20% Similarity=0.194 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHH-ccCCCCchhHHH-hcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhh
Q 015709 148 EDSQRALQELLI-LVEPIDNANDLS-KLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV 225 (402)
Q Consensus 148 e~k~~AL~~L~~-Lve~iDnA~~l~-~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL 225 (402)
|-|+.||+++.. +.+..=.-.++. .-+.+..|+...+.+.+.....+...+..+++ +|.....+.+.|+...|-++=
T Consensus 2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~-~~~a~~~l~~iG~~~fL~klr 80 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLK-SPYAAQILRDIGAVRFLSKLR 80 (98)
T ss_pred hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHh-CcHHHHHHHHccHHHHHHHHH
Confidence 567889988886 444554555555 55678888888899888899999999999886 577888888999988877766
Q ss_pred cCCCHHH
Q 015709 226 KSSFVEE 232 (402)
Q Consensus 226 ~s~~~~v 232 (402)
...++..
T Consensus 81 ~~~~~~~ 87 (98)
T PF14726_consen 81 PNVEPNL 87 (98)
T ss_pred hcCCHHH
Confidence 5544443
No 238
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=70.45 E-value=39 Score=34.68 Aligned_cols=132 Identities=13% Similarity=0.087 Sum_probs=76.4
Q ss_pred CCHHHHHHHHHHHHHHhcCChHh-HHHHHHcCcHHHHHHhhc-CCCH--HHHHHHHHHHHHHhcCChh------------
Q 015709 186 PDTDIRKISAWILGKASQNNPLV-QKQVLELGALSKLMKMVK-SSFV--EEAVKALYTVSSLIRNNLA------------ 249 (402)
Q Consensus 186 ~~~~Ir~~Aa~vLg~~aqNNp~~-Q~~~le~g~L~~Ll~LL~-s~~~--~vr~kAl~ALS~LiR~~~~------------ 249 (402)
+...-|..|+..|..++.+.++. ...+. +.+..++.-.. +++. ..+-.|++.++++.-....
T Consensus 223 d~~TrR~AA~dfl~~L~~~~~~~v~~i~~--~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v 300 (370)
T PF08506_consen 223 DSDTRRRAACDFLRSLCKKFEKQVTSILM--QYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELV 300 (370)
T ss_dssp ---SHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS
T ss_pred ccCCcHHHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccc
Confidence 44668889999999998764432 22221 22333333211 2222 3355688888887644321
Q ss_pred cHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHH
Q 015709 250 GQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALA 329 (402)
Q Consensus 250 ~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~ 329 (402)
....|+....++-|. .+.+..+-+|.+|+..+..+-.. .+ .+.+ .++++.++.+|.+++.-++.-|+.
T Consensus 301 ~v~~Ff~~~v~peL~---~~~~~~piLka~aik~~~~Fr~~----l~---~~~l--~~~~~~l~~~L~~~~~vv~tyAA~ 368 (370)
T PF08506_consen 301 DVVDFFSQHVLPELQ---PDVNSHPILKADAIKFLYTFRNQ----LP---KEQL--LQIFPLLVNHLQSSSYVVHTYAAI 368 (370)
T ss_dssp -HHHHHHHHTCHHHH----SS-S-HHHHHHHHHHHHHHGGG----S----HHHH--HHHHHHHHHHTTSS-HHHHHHHHH
T ss_pred cHHHHHHHHhHHHhc---ccCCCCcchHHHHHHHHHHHHhh----CC---HHHH--HHHHHHHHHHhCCCCcchhhhhhh
Confidence 245666666656555 12223566999999999987632 11 1222 358999999999999888888876
Q ss_pred HH
Q 015709 330 AI 331 (402)
Q Consensus 330 aL 331 (402)
|+
T Consensus 369 ~i 370 (370)
T PF08506_consen 369 AI 370 (370)
T ss_dssp HH
T ss_pred hC
Confidence 64
No 239
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=70.14 E-value=34 Score=37.77 Aligned_cols=130 Identities=15% Similarity=0.148 Sum_probs=88.9
Q ss_pred CHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCC--HHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHH
Q 015709 146 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPD--TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMK 223 (402)
Q Consensus 146 t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~--~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~ 223 (402)
+.++|..=+.-|.+.++.. -.+++....++.|+..+...+ .++......+ |.....-+ +..+.+|.|++
T Consensus 267 s~~eK~~Ff~~L~~~l~~~--pe~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k~-~k~ld~~e------yq~~i~p~l~k 337 (690)
T KOG1243|consen 267 SVEEKQKFFSGLIDRLDNF--PEEIIASKVLPILLAALEFGDAASDFLTPLFKL-GKDLDEEE------YQVRIIPVLLK 337 (690)
T ss_pred cHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhccccchhhhhHHHHh-hhhccccc------cccchhhhHHH
Confidence 5677777666665544433 367888888888887775543 3333333333 33322222 44567899999
Q ss_pred hhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015709 224 MVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (402)
Q Consensus 224 LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~ 289 (402)
|+++.+..+|...|.-+=..+.+-.+ ..++--.++.+...+.+. +.-+|..++-.+..|+.
T Consensus 338 LF~~~Dr~iR~~LL~~i~~~i~~Lt~---~~~~d~I~phv~~G~~DT--n~~Lre~Tlksm~~La~ 398 (690)
T KOG1243|consen 338 LFKSPDRQIRLLLLQYIEKYIDHLTK---QILNDQIFPHVALGFLDT--NATLREQTLKSMAVLAP 398 (690)
T ss_pred HhcCcchHHHHHHHHhHHHHhhhcCH---HhhcchhHHHHHhhcccC--CHHHHHHHHHHHHHHHh
Confidence 99999999998888888777776543 455667888888888875 56789999888888874
No 240
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=69.40 E-value=16 Score=32.80 Aligned_cols=96 Identities=18% Similarity=0.230 Sum_probs=41.4
Q ss_pred ccCCCCHHHHHHhHHHHHHHHHHcCCCC-HHHHHHHHHHHhhcCCCCHHHHHHH--HHHHHH---ccCCCCchhHHHh--
Q 015709 101 DVQRLSPSELKKRQMEIKELMEKLKTPS-DAQLIQIAIDDLNNSTLSLEDSQRA--LQELLI---LVEPIDNANDLSK-- 172 (402)
Q Consensus 101 ~~~~~s~e~l~~r~~~L~ea~~~l~~~~-d~~lMk~al~~L~~~~~t~e~k~~A--L~~L~~---Lve~iDnA~~l~~-- 172 (402)
++.|++.+.. ..|-+.++. .|. +.+.+..++.-=..++.++-.++.| |..+.. -+.-|+-...+.-
T Consensus 15 pPlPL~a~Qt----~~lielLk~--~~~~~~~~lldLL~~RV~PGVD~AA~VKA~FL~~ia~g~~~~~~Is~~~Av~LLG 88 (154)
T PF11791_consen 15 PPLPLNAEQT----AELIELLKN--PPAGEEAFLLDLLTNRVPPGVDEAAYVKAEFLAAIAKGEISSPLISPAEAVELLG 88 (154)
T ss_dssp ------HHHH----HHHHHHHHS----TT-HHHHHHHHHHSS--TT-HHHHHHHHHHHHHHTTSS-BTTB-HHHHHHHHT
T ss_pred CCCCCCHHHH----HHHHHHHhC--CCCccHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHcCCccCCCcCHHHHHHHHh
Confidence 4567887644 233333331 221 3333333333333466665555444 333332 1122333333222
Q ss_pred --cCC--HHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 015709 173 --LGG--LSVLVGQLNHPDTDIRKISAWILGKAS 202 (402)
Q Consensus 173 --lGg--l~~Li~lL~s~~~~Ir~~Aa~vLg~~a 202 (402)
+|| +.+||.+|.++++++...|+.+|.+..
T Consensus 89 tM~GGYNV~~LI~~L~~~d~~lA~~Aa~aLk~Tl 122 (154)
T PF11791_consen 89 TMLGGYNVQPLIDLLKSDDEELAEEAAEALKNTL 122 (154)
T ss_dssp TS-SSTTHHHHHHGG--G-TTTHHHHHHHHHT--
T ss_pred hccCCCcHHHHHHHHcCCcHHHHHHHHHHHHhhH
Confidence 355 889999999999999999999987653
No 241
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=69.05 E-value=1.9e+02 Score=31.88 Aligned_cols=197 Identities=15% Similarity=0.132 Sum_probs=115.7
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCH-----------H-HHHHhcCCCCHHHHHHHHHH
Q 015709 130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGL-----------S-VLVGQLNHPDTDIRKISAWI 197 (402)
Q Consensus 130 ~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl-----------~-~Li~lL~s~~~~Ir~~Aa~v 197 (402)
.+.|--+.++|.+....++-|..|--.|.+-++.-|.+....=..-| . ..+.-|.++.|.+-..|+..
T Consensus 38 ~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~~E~k~qvK~~al~aL~s~epr~~~~Aaql 117 (858)
T COG5215 38 EQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHESKEQVKGMALRALKSPEPRFCTMAAQL 117 (858)
T ss_pred HHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 34566666777666656666666666666655544443322111111 1 12456778888888889999
Q ss_pred HHHHhcCC-hHhHHHHHHcCcHHHHHHhhcCCCH-HHHHHHHHHHHHHhcCChhcHHHHHhcCc--HHHHHHhhcCCCcc
Q 015709 198 LGKASQNN-PLVQKQVLELGALSKLMKMVKSSFV-EEAVKALYTVSSLIRNNLAGQEMFYVEAG--DLMLQDILGNSSFE 273 (402)
Q Consensus 198 Lg~~aqNN-p~~Q~~~le~g~L~~Ll~LL~s~~~-~vr~kAl~ALS~LiR~~~~~~~~f~~~gG--i~~L~~lL~s~~~d 273 (402)
|+.++.-. |..+= -|.+..++...-.+.+ .++..++.++|.++..-.| +...-..|. +.+....++.. ++
T Consensus 118 ~aaIA~~Elp~~~w----p~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~P-e~li~~sN~il~aiv~ga~k~e-t~ 191 (858)
T COG5215 118 LAAIARMELPNSLW----PGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAP-EDLIQMSNVILFAIVMGALKNE-TT 191 (858)
T ss_pred HHHHHHhhCccccc----hHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCH-HHHHHHhhHHHHHHHHhhcccC-ch
Confidence 88887421 10000 1345555555555543 5788999999999887444 222222332 23334445544 57
Q ss_pred HHHHHHHHHHHHH-HhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcC
Q 015709 274 IRLHRKAVSLVGD-LAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 337 (402)
Q Consensus 274 ~klq~kA~~lL~~-L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~ 337 (402)
..+|.-|+.+|.+ |..-+..-..+.. ..=+++.+++.-..+|..+|.+|..++..+...
T Consensus 192 ~avRLaaL~aL~dsl~fv~~nf~~E~e-----rNy~mqvvceatq~~d~e~q~aafgCl~kim~L 251 (858)
T COG5215 192 SAVRLAALKALMDSLMFVQGNFCYEEE-----RNYFMQVVCEATQGNDEELQHAAFGCLNKIMML 251 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhh-----hchhheeeehhccCCcHHHHHHHHHHHHHHHHH
Confidence 7889999999888 4332100001111 123455667777888999999999999988765
No 242
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=68.25 E-value=27 Score=37.92 Aligned_cols=99 Identities=13% Similarity=0.147 Sum_probs=70.6
Q ss_pred CCHHHHHHh-cCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCChhcH
Q 015709 174 GGLSVLVGQ-LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS-FVEEAVKALYTVSSLIRNNLAGQ 251 (402)
Q Consensus 174 Ggl~~Li~l-L~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~-~~~vr~kAl~ALS~LiR~~~~~~ 251 (402)
|.+..|+.+ .+..+.+||..|.-+||-+|-..+ +.++..+++|+.+ +..||.....||+=.|.+....
T Consensus 551 ~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~---------~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~- 620 (926)
T COG5116 551 GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR---------DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK- 620 (926)
T ss_pred hhHhhhheeecccCchHHHHHHHHheeeeEecCc---------chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH-
Confidence 345555555 466789999999999999886544 6788888888765 4678988888888766654321
Q ss_pred HHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015709 252 EMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (402)
Q Consensus 252 ~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~ 290 (402)
-.+.+|-.+..++ ..-+|.-|+-+++-+..+
T Consensus 621 ------~a~diL~~L~~D~--~dfVRQ~AmIa~~mIl~Q 651 (926)
T COG5116 621 ------VATDILEALMYDT--NDFVRQSAMIAVGMILMQ 651 (926)
T ss_pred ------HHHHHHHHHhhCc--HHHHHHHHHHHHHHHHhh
Confidence 1345666777765 344888888888887765
No 243
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=66.95 E-value=36 Score=37.54 Aligned_cols=72 Identities=17% Similarity=0.177 Sum_probs=58.8
Q ss_pred HhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 015709 171 SKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIR 245 (402)
Q Consensus 171 ~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR 245 (402)
..-+.+|.|+++..+++..||.. .|..+-+.-+.....+++.-.+|.+..-+.+.++.+|..++-++..++-
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~---LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~ 398 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLL---LLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAP 398 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHH---HHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHh
Confidence 34567899999999999999954 6666666666677888888999999999999999999888888877663
No 244
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.66 E-value=1.8e+02 Score=35.27 Aligned_cols=217 Identities=12% Similarity=0.050 Sum_probs=121.5
Q ss_pred hHHHHHHHHHHcCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCC--chhHHHhcCCHHHHHHhcCCCCHHH
Q 015709 113 RQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPID--NANDLSKLGGLSVLVGQLNHPDTDI 190 (402)
Q Consensus 113 r~~~L~ea~~~l~~~~d~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iD--nA~~l~~lGgl~~Li~lL~s~~~~I 190 (402)
.|++|-..-.+++.|| ++-+-|...+ +..+-..|..|---|--+..+-- ..--+- ..+|.|.++=..|+..|
T Consensus 941 TYKELc~LASdl~qPd---LVYKFM~LAn-h~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~--kLIPrLyRY~yDP~~~V 1014 (1702)
T KOG0915|consen 941 TYKELCNLASDLGQPD---LVYKFMQLAN-HNATWNSKKGAAFGFGAIAKQAGEKLEPYLK--KLIPRLYRYQYDPDKKV 1014 (1702)
T ss_pred HHHHHHHHHhhcCChH---HHHHHHHHhh-hhchhhcccchhhchHHHHHHHHHhhhhHHH--HhhHHHhhhccCCcHHH
Confidence 4777777777777654 5555555443 33444444443222222222110 001111 24788888878899999
Q ss_pred HHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHh--cCcHHHHHHhhc
Q 015709 191 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYV--EAGDLMLQDILG 268 (402)
Q Consensus 191 r~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~--~gGi~~L~~lL~ 268 (402)
|..=..+=+++++....+-+..+.. .+.-|+.-+.+..=-+|..++.||+-++|+.|. +.|.+ -.-|..+.+.+.
T Consensus 1015 q~aM~sIW~~Li~D~k~~vd~y~ne-Il~eLL~~lt~kewRVReasclAL~dLl~g~~~--~~~~e~lpelw~~~fRvmD 1091 (1702)
T KOG0915|consen 1015 QDAMTSIWNALITDSKKVVDEYLNE-ILDELLVNLTSKEWRVREASCLALADLLQGRPF--DQVKEKLPELWEAAFRVMD 1091 (1702)
T ss_pred HHHHHHHHHHhccChHHHHHHHHHH-HHHHHHHhccchhHHHHHHHHHHHHHHHcCCCh--HHHHHHHHHHHHHHHHHHH
Confidence 9999999999998755555555543 566666666554445789999999999999653 44544 246666666666
Q ss_pred CCCccH-HHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHH-hhcCCChHHHHHHHHHHHHHhcCCh
Q 015709 269 NSSFEI-RLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVD-LTASADLDLQEKALAAIKNLLQLRT 339 (402)
Q Consensus 269 s~~~d~-klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~-lL~~~d~dv~E~aL~aL~~L~~~~~ 339 (402)
+-+..+ ..-.+++..++.||.-.-...++..-..+. ..++|.|.+ -.-++-..++..++.+|.-|+..+.
T Consensus 1092 DIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l-~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg 1163 (1702)
T KOG0915|consen 1092 DIKESVREAADKAARALSKLCVRICDVTNGAKGKEAL-DIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSG 1163 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHH-HHHHHHHhccCcccchHHHHHHHHHHHHHHHHhch
Confidence 432111 123356666777664210001111111111 112222222 1114456788888888888887653
No 245
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.52 E-value=1.1e+02 Score=34.32 Aligned_cols=145 Identities=16% Similarity=0.103 Sum_probs=87.9
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHH
Q 015709 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF 254 (402)
Q Consensus 175 gl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f 254 (402)
|..--+++|+++--.=+.-.--.++-+...|.+.-+.+ +..+-.=|.+.++...--|+..|+++ +.....+.|
T Consensus 75 GhmEaV~LLss~kysEKqIGYl~is~L~n~n~dl~klv-----in~iknDL~srn~~fv~LAL~~I~ni--G~re~~ea~ 147 (938)
T KOG1077|consen 75 GHMEAVNLLSSNKYSEKQIGYLFISLLLNENSDLMKLV-----INSIKNDLSSRNPTFVCLALHCIANI--GSREMAEAF 147 (938)
T ss_pred chHHHHHHhhcCCccHHHHhHHHHHHHHhcchHHHHHH-----HHHHHhhhhcCCcHHHHHHHHHHHhh--ccHhHHHHh
Confidence 34445677766432223333333333443343332222 23333344455555567789999987 344555555
Q ss_pred HhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHH
Q 015709 255 YVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNL 334 (402)
Q Consensus 255 ~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L 334 (402)
. .-++ .+|-+++...-+|.||+-++-.|... .|+ .+.-.+|...++++|...|..+.-.+...+..|
T Consensus 148 ~--~DI~---KlLvS~~~~~~vkqkaALclL~L~r~-----spD---l~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~l 214 (938)
T KOG1077|consen 148 A--DDIP---KLLVSGSSMDYVKQKAALCLLRLFRK-----SPD---LVNPGEWAQRIVHLLDDQHMGVVTAATSLIEAL 214 (938)
T ss_pred h--hhhH---HHHhCCcchHHHHHHHHHHHHHHHhc-----Ccc---ccChhhHHHHHHHHhCccccceeeehHHHHHHH
Confidence 3 2233 55555555667999999999888753 333 233468999999999998888888888888888
Q ss_pred hcCCh
Q 015709 335 LQLRT 339 (402)
Q Consensus 335 ~~~~~ 339 (402)
+...+
T Consensus 215 vk~~p 219 (938)
T KOG1077|consen 215 VKKNP 219 (938)
T ss_pred HHcCC
Confidence 87643
No 246
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=66.06 E-value=40 Score=34.92 Aligned_cols=86 Identities=16% Similarity=0.157 Sum_probs=62.0
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChH-hHHHHHHc
Q 015709 137 IDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPL-VQKQVLEL 215 (402)
Q Consensus 137 l~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~-~Q~~~le~ 215 (402)
+....++..|.|+=...|+....+-++.|++++ ++..|..=|++.++.|...|..+++.|+.|+.+ .+..|-..
T Consensus 13 v~KAT~e~nT~enW~~IlDvCD~v~~~~~~~kd-----~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr 87 (462)
T KOG2199|consen 13 VEKATDEKNTSENWSLILDVCDKVGSDPDGGKD-----CLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSR 87 (462)
T ss_pred HHHhcCcccccccHHHHHHHHHhhcCCCcccHH-----HHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhh
Confidence 444445555556555556655555566777776 566788889999999999999999999998654 44555566
Q ss_pred CcHHHHHHhhcC
Q 015709 216 GALSKLMKMVKS 227 (402)
Q Consensus 216 g~L~~Ll~LL~s 227 (402)
.....|..++.+
T Consensus 88 ~F~~el~al~~~ 99 (462)
T KOG2199|consen 88 DFTTELRALIES 99 (462)
T ss_pred hHHHHHHHHHhh
Confidence 777778888874
No 247
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=65.60 E-value=1.3e+02 Score=28.77 Aligned_cols=176 Identities=17% Similarity=0.137 Sum_probs=102.3
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcC-c-HHHHHHhhcC----CCHHHHHHHHHHHHHHhcCChh
Q 015709 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELG-A-LSKLMKMVKS----SFVEEAVKALYTVSSLIRNNLA 249 (402)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g-~-L~~Ll~LL~s----~~~~vr~kAl~ALS~LiR~~~~ 249 (402)
...++..+.+=.++-+..+.-++.-++-+.+ .-..+...+ + ...+..++.. .++..+.-++..++|+..+ +.
T Consensus 65 ~~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~-~~ 142 (268)
T PF08324_consen 65 LILLLKILLSWPPESRFPALDLLRLAALHPP-ASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSH-PP 142 (268)
T ss_dssp HHHHHHHHCCS-CCC-HHHHHHHHHHCCCHC-HHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTS-CC
T ss_pred HHHHHHHHHhCCCccchhHHhHHHHHHhCcc-HHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCC-Cc
Confidence 4455555555455668899999988887544 433443332 2 3444444433 2356788899999999875 56
Q ss_pred cHHHHHhcCc--HHHHHHhhcCCC--ccHHHHHHHHHHHHHHhhcccccC-CCCcchhHHhCCcHHHHHHhhcC--CChH
Q 015709 250 GQEMFYVEAG--DLMLQDILGNSS--FEIRLHRKAVSLVGDLAKCQLENM-HKVEPPLFRDRFFLKSVVDLTAS--ADLD 322 (402)
Q Consensus 250 ~~~~f~~~gG--i~~L~~lL~s~~--~d~klq~kA~~lL~~L~~~~l~~~-~~~~~~~l~~~g~v~~Lv~lL~~--~d~d 322 (402)
....+..+.. +--.+..+.+.. .+..+|.-++.++.|++....... +.+. ...++..+++.+.. .|.+
T Consensus 143 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~-----~~~ll~~i~~~~~~~~~d~E 217 (268)
T PF08324_consen 143 GRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEW-----QSELLSSIIEVLSREESDEE 217 (268)
T ss_dssp CHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCH-----HHHHHHHHHHHCHCCHTSHH
T ss_pred cHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHH-----HHHHHHHHHHHhccccCCHH
Confidence 6666665443 222222222221 146688899999999976431111 1111 11245566664333 4899
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhcCCcHHHHHHHH
Q 015709 323 LQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLR 359 (402)
Q Consensus 323 v~E~aL~aL~~L~~~~~~~~~~~~~~~GL~~~L~~L~ 359 (402)
..=.++.|+++|+..+....+... ..|+...+...+
T Consensus 218 a~~R~LvAlGtL~~~~~~~~~~~~-~l~~~~~~~~~~ 253 (268)
T PF08324_consen 218 ALYRLLVALGTLLSSSDSAKQLAK-SLDVKSVLSKKA 253 (268)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHCC-CCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccChhHHHHHH-HcChHHHHHHHH
Confidence 999999999999977654443332 355666655543
No 248
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=65.20 E-value=2.1e+02 Score=32.42 Aligned_cols=171 Identities=12% Similarity=0.097 Sum_probs=104.0
Q ss_pred HHHhHHHHHHHHHHcCCCCHHHHHHHHHHHhhcCCCC--HHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCC
Q 015709 110 LKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLS--LEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPD 187 (402)
Q Consensus 110 l~~r~~~L~ea~~~l~~~~d~~lMk~al~~L~~~~~t--~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~ 187 (402)
...|.+++...+.-..+-+...++......+.+.... -..+..+..-+..+.-.... +.++....+..-++-+..+
T Consensus 173 t~vr~k~ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~--~~vk~elr~~~~~lc~d~~ 250 (759)
T KOG0211|consen 173 TGVREKAVESLLKVAVGLPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPD--DAVKRELRPIVQSLCQDDT 250 (759)
T ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCCh--HHHHHHHHHHHHhhccccc
Confidence 4456666665554432222223344433333332111 11244444444443333322 5555555556666778889
Q ss_pred HHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhh
Q 015709 188 TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDIL 267 (402)
Q Consensus 188 ~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL 267 (402)
+.+|..++.=+|++++- .+......+.+|.+.+|..++...||..|.-++-++........ =...-+.+.++...
T Consensus 251 ~~Vr~~~a~~l~~~a~~---~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~--d~~~~~~~~l~~~~ 325 (759)
T KOG0211|consen 251 PMVRRAVASNLGNIAKV---LESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD--DVVKSLTESLVQAV 325 (759)
T ss_pred hhhHHHHHhhhHHHHHH---HHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch--hhhhhhhHHHHHHh
Confidence 99999999999999865 45578888999999999999989999888888777765543321 12345677777777
Q ss_pred cCCCccHHHHHHHHHHHHHHhh
Q 015709 268 GNSSFEIRLHRKAVSLVGDLAK 289 (402)
Q Consensus 268 ~s~~~d~klq~kA~~lL~~L~~ 289 (402)
.++ +.+++....-....|..
T Consensus 326 ~d~--~~~v~~~~~~~~~~L~~ 345 (759)
T KOG0211|consen 326 EDG--SWRVSYMVADKFSELSS 345 (759)
T ss_pred cCh--hHHHHHHHhhhhhhHHH
Confidence 765 45566666555555543
No 249
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=64.21 E-value=95 Score=32.61 Aligned_cols=82 Identities=18% Similarity=0.148 Sum_probs=61.5
Q ss_pred CCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCH-------H-HHHHHHHHHHHHhcCChhc-HHHHHh
Q 015709 186 PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFV-------E-EAVKALYTVSSLIRNNLAG-QEMFYV 256 (402)
Q Consensus 186 ~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~-------~-vr~kAl~ALS~LiR~~~~~-~~~f~~ 256 (402)
++-.+-..|..||.|++-+.+.+|+.+++......+++.+-..-. + .-.+.++-++.+=. .. .+.+++
T Consensus 109 ~d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~---~~Rsql~~~ 185 (532)
T KOG4464|consen 109 ADMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALET---DHRSQLIAE 185 (532)
T ss_pred cchHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhH---HHHHHHHHH
Confidence 345788899999999999999999999999888888877654211 1 13466777776532 33 445568
Q ss_pred cCcHHHHHHhhcCC
Q 015709 257 EAGDLMLQDILGNS 270 (402)
Q Consensus 257 ~gGi~~L~~lL~s~ 270 (402)
.+|++++.+.|.++
T Consensus 186 l~Gl~~lt~~led~ 199 (532)
T KOG4464|consen 186 LLGLELLTNWLEDK 199 (532)
T ss_pred hcccHHHHHHhhcc
Confidence 99999999998753
No 250
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=64.20 E-value=96 Score=30.33 Aligned_cols=45 Identities=13% Similarity=0.195 Sum_probs=35.9
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhH-HHHHHcCcHH
Q 015709 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQ-KQVLELGALS 219 (402)
Q Consensus 175 gl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q-~~~le~g~L~ 219 (402)
.+|+++.++.+.++++|..++.++..+.++.+... ..+...|..+
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~ 165 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFS 165 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHH
Confidence 37888999999999999999999999999877655 2344555433
No 251
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=64.12 E-value=9.8 Score=32.29 Aligned_cols=42 Identities=29% Similarity=0.487 Sum_probs=34.2
Q ss_pred HHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHH
Q 015709 151 QRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRK 192 (402)
Q Consensus 151 ~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~ 192 (402)
-..+..|..+....+.=-.|+++|+++.|+++|.|+|.+|..
T Consensus 64 d~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 64 DEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 344555666677778888999999999999999999998854
No 252
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=63.90 E-value=1.7e+02 Score=29.45 Aligned_cols=144 Identities=15% Similarity=0.061 Sum_probs=92.5
Q ss_pred CCHHHHHHHHHHHHHccCCCCchh-HHHh---------c--CCHHHHHHhcC------CCCHHHHHHHHHHHHHHhcCCh
Q 015709 145 LSLEDSQRALQELLILVEPIDNAN-DLSK---------L--GGLSVLVGQLN------HPDTDIRKISAWILGKASQNNP 206 (402)
Q Consensus 145 ~t~e~k~~AL~~L~~Lve~iDnA~-~l~~---------l--Ggl~~Li~lL~------s~~~~Ir~~Aa~vLg~~aqNNp 206 (402)
...+.|..|+..|.-++.+-+.++ .|.+ . .....|+.-|- +.++---+.|+.++..+..+|+
T Consensus 50 ~~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~ 129 (312)
T PF04869_consen 50 QPFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNP 129 (312)
T ss_dssp S-HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-H
T ss_pred cchHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCH
Confidence 356777777777777776433332 2332 0 11112444333 3355556899999999999999
Q ss_pred HhHHHHHHc------------CcHHHHHHhhcCC-----CHHHHHHHHHHHHHHhcCChhcHHHHHhcC-cHHHHHHhhc
Q 015709 207 LVQKQVLEL------------GALSKLMKMVKSS-----FVEEAVKALYTVSSLIRNNLAGQEMFYVEA-GDLMLQDILG 268 (402)
Q Consensus 207 ~~Q~~~le~------------g~L~~Ll~LL~s~-----~~~vr~kAl~ALS~LiR~~~~~~~~f~~~g-Gi~~L~~lL~ 268 (402)
.+++.+++- ..|+.+..+|... ++-++.--+.-|+.-+-++|.+...|+..+ .++.|+....
T Consensus 130 ~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~FL~~~s~l~~Li~~~~ 209 (312)
T PF04869_consen 130 EAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVNDFLSEGSNLQSLIEFSN 209 (312)
T ss_dssp HHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHHHHCSTTHHHHHHHHHS
T ss_pred HHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHHHHcCcchHHHHHHHhh
Confidence 999998764 2466677776652 234556667788888899999999999875 8899999754
Q ss_pred -CCCccHHHHHHHHHHHHHHh
Q 015709 269 -NSSFEIRLHRKAVSLVGDLA 288 (402)
Q Consensus 269 -s~~~d~klq~kA~~lL~~L~ 288 (402)
++..++-+|-=++++|.-..
T Consensus 210 ~~~~~~~~VqGL~A~LLGicy 230 (312)
T PF04869_consen 210 QSSSEDVLVQGLCAFLLGICY 230 (312)
T ss_dssp --TCCCHHHHHHHHHHHHHHH
T ss_pred cCCCCcchHHHHHHHHHHHHH
Confidence 34457778877888877433
No 253
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=63.17 E-value=74 Score=27.97 Aligned_cols=91 Identities=19% Similarity=0.168 Sum_probs=63.3
Q ss_pred HHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHH-HH
Q 015709 235 KALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKS-VV 313 (402)
Q Consensus 235 kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~-Lv 313 (402)
..+-.|+-+++..+.+.. .++..|..=|++. .+++++..|+.++-.++. +....+...+.+.+++.. |+
T Consensus 20 ~~ileicD~In~~~~~~k-----~a~ralkkRl~~~-~n~~v~l~aL~LLe~~vk----NCG~~fh~eiask~Fl~e~L~ 89 (141)
T cd03565 20 GLNMEICDIINETEDGPK-----DAVRALKKRLNGN-KNHKEVMLTLTVLETCVK----NCGHRFHVLVAKKDFIKDVLV 89 (141)
T ss_pred HHHHHHHHHHhCCCCcHH-----HHHHHHHHHHccC-CCHHHHHHHHHHHHHHHH----HccHHHHHHHHHHHhhhHHHH
Confidence 445566666665432212 3455566656542 367889999999998876 355667777888899997 99
Q ss_pred HhhcC---CChHHHHHHHHHHHHHh
Q 015709 314 DLTAS---ADLDLQEKALAAIKNLL 335 (402)
Q Consensus 314 ~lL~~---~d~dv~E~aL~aL~~L~ 335 (402)
.++.. .+..++.+++..+.+..
T Consensus 90 ~~i~~~~~~~~~Vk~kil~li~~W~ 114 (141)
T cd03565 90 KLINPKNNPPTIVQEKVLALIQAWA 114 (141)
T ss_pred HHHcccCCCcHHHHHHHHHHHHHHH
Confidence 99863 24689999998888775
No 254
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=62.92 E-value=45 Score=36.38 Aligned_cols=93 Identities=16% Similarity=0.209 Sum_probs=64.7
Q ss_pred CHHHHHHHHHHHHHccCCCCchhHHHhc----CC-----------HHHHHHhcCCCCHHHHHHHHHHHHHHhcC--ChHh
Q 015709 146 SLEDSQRALQELLILVEPIDNANDLSKL----GG-----------LSVLVGQLNHPDTDIRKISAWILGKASQN--NPLV 208 (402)
Q Consensus 146 t~e~k~~AL~~L~~Lve~iDnA~~l~~l----Gg-----------l~~Li~lL~s~~~~Ir~~Aa~vLg~~aqN--Np~~ 208 (402)
.|+-|+.||++|..++|+.+.-.-.+.+ |- +..+.+-+--.|.-||..|..+|+..+-| .+.+
T Consensus 444 ~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~ 523 (898)
T COG5240 444 DPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVS 523 (898)
T ss_pred CchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcccccc
Confidence 5688999999999999998765543331 10 01111111114567999999999888765 4445
Q ss_pred HHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 015709 209 QKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSL 243 (402)
Q Consensus 209 Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~L 243 (402)
++.+ ...|-+++++.++++|-.|.+++-+|
T Consensus 524 ~~sv-----~~~lkRclnD~DdeVRdrAsf~l~~~ 553 (898)
T COG5240 524 PQSV-----ENALKRCLNDQDDEVRDRASFLLRNM 553 (898)
T ss_pred HHHH-----HHHHHHHhhcccHHHHHHHHHHHHhh
Confidence 5543 45667888888899999999999987
No 255
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=62.44 E-value=25 Score=40.42 Aligned_cols=68 Identities=9% Similarity=0.078 Sum_probs=53.3
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015709 216 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (402)
Q Consensus 216 g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~ 289 (402)
-.+|.+-.-|.++++-+|..++--|++++. ..|++-+|.-++.-++..-..+++++.-|-|+++.+..
T Consensus 1006 ~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq------~~~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~ 1073 (1529)
T KOG0413|consen 1006 RYIPMIAASLCDPSVIVRRQTIILLARLLQ------FGIVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQ 1073 (1529)
T ss_pred HhhHHHHHHhcCchHHHHHHHHHHHHHHHh------hhhhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHh
Confidence 468999999999888899999999999874 35677777766665554322367899999999999985
No 256
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.78 E-value=50 Score=37.16 Aligned_cols=141 Identities=12% Similarity=0.107 Sum_probs=95.7
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHh
Q 015709 177 SVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYV 256 (402)
Q Consensus 177 ~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~ 256 (402)
+-+..++++.+..+-..|..+||.|++++-.+... ++.-|++++++.+..|...|+-.|--|+..+|.--..
T Consensus 395 rE~q~YI~s~d~~faa~aV~AiGrCA~~~~sv~~t-----CL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~~--- 466 (968)
T KOG1060|consen 395 RELQTYIKSSDRSFAAAAVKAIGRCASRIGSVTDT-----CLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHLE--- 466 (968)
T ss_pred HHHHHHHhcCchhHHHHHHHHHHHHHHhhCchhhH-----HHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHHH---
Confidence 33445667777789999999999999998766665 4677999999988888888888899898777652222
Q ss_pred cCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhc
Q 015709 257 EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 336 (402)
Q Consensus 257 ~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~ 336 (402)
-+..|..++.+- .-+..|.-.+|+++-.|.. -+... ..+++.++.-..++...++-++|..-..|.-
T Consensus 467 --ii~~La~lldti-~vp~ARA~IiWLige~~e~-----vpri~-----PDVLR~laksFs~E~~evKlQILnL~aKLyl 533 (968)
T KOG1060|consen 467 --ILFQLARLLDTI-LVPAARAGIIWLIGEYCEI-----VPRIA-----PDVLRKLAKSFSDEGDEVKLQILNLSAKLYL 533 (968)
T ss_pred --HHHHHHHHhhhh-hhhhhhceeeeeehhhhhh-----cchhc-----hHHHHHHHHhhccccchhhHHHHHhhhhheE
Confidence 344566666543 2344566677888877632 22222 2345566666667777777777776666655
Q ss_pred CC
Q 015709 337 LR 338 (402)
Q Consensus 337 ~~ 338 (402)
..
T Consensus 534 ~~ 535 (968)
T KOG1060|consen 534 TN 535 (968)
T ss_pred ec
Confidence 43
No 257
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=61.60 E-value=71 Score=35.76 Aligned_cols=132 Identities=14% Similarity=0.117 Sum_probs=90.3
Q ss_pred HHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHh--cCcHHHHHHhhcCCCccHH
Q 015709 198 LGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYV--EAGDLMLQDILGNSSFEIR 275 (402)
Q Consensus 198 Lg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~--~gGi~~L~~lL~s~~~d~k 275 (402)
+.+++.-|...++.+++.-+++.+-.++..+++..++.++-.++||.-+ +.....|+. ..|.+....++... +.+
T Consensus 566 ltnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~-~~~~e~si~e~~~~l~~w~~~~e~~--~E~ 642 (748)
T KOG4151|consen 566 LTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWS-PLLYERSIVEYKDRLKLWNLNLEVA--DEK 642 (748)
T ss_pred hhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhh-HHHHHHHhhccccCchHHHHHHHhh--hhH
Confidence 3344444566666677777777766777777788899999999999864 555666654 35777777666653 566
Q ss_pred HHHHHHHHHHHHhhcccccCCCCcch-hHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcC
Q 015709 276 LHRKAVSLVGDLAKCQLENMHKVEPP-LFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 337 (402)
Q Consensus 276 lq~kA~~lL~~L~~~~l~~~~~~~~~-~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~ 337 (402)
+..-++..+.-++.. ....++ ...-..+...++.++.+++..+|...+....++...
T Consensus 643 ~~lA~a~a~a~I~sv-----~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~ 700 (748)
T KOG4151|consen 643 FELAGAGALAAITSV-----VENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEA 700 (748)
T ss_pred Hhhhccccccchhhc-----chhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHH
Confidence 776666666544431 233333 444456778888899999999999998888886554
No 258
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=60.69 E-value=73 Score=35.59 Aligned_cols=140 Identities=13% Similarity=0.084 Sum_probs=89.0
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHh-----cCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhccc
Q 015709 218 LSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYV-----EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQL 292 (402)
Q Consensus 218 L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~-----~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l 292 (402)
+..++.+|.+++-..|-..+-+++|++.++..--+..-. ..-+.+|+.-|.+. .+..|.||+..+..++.-
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~--~py~RtKalqv~~kifdl-- 376 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDT--YPYTRTKALQVLEKIFDL-- 376 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhcc--chHHHHHHHHHHHHHHhC--
Confidence 567889999988888989999999999875432222210 12344455555553 678999999999988842
Q ss_pred ccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChhh--------HHHHHh-cCCcHHHHHHHHHHhH
Q 015709 293 ENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTE--------ALVLKD-FCGLDTALERLRQQLQ 363 (402)
Q Consensus 293 ~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~--------~~~~~~-~~GL~~~L~~L~~~~~ 363 (402)
+.... =..+.++..++..|.....-+|.+|......|+..-+-. +..++. -++.+.-+.+|+...+
T Consensus 377 ---~sk~~--~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HPF~~~h~~~l~~~~wek~L~~~E~qlNslk~~~q 451 (1128)
T COG5098 377 ---NSKTV--GRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHPFASEHGSQLRLTLWEKNLGSAENQLNSLKSGLQ 451 (1128)
T ss_pred ---ccccc--chHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCChhhhccchhhhHHHHhhcchhHhHhhccchhhh
Confidence 21111 123556667777787777889999998888766432110 112222 3455666777777775
Q ss_pred Hhh
Q 015709 364 EVM 366 (402)
Q Consensus 364 ~l~ 366 (402)
+-.
T Consensus 452 e~l 454 (1128)
T COG5098 452 ETL 454 (1128)
T ss_pred ccc
Confidence 543
No 259
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=60.32 E-value=25 Score=29.79 Aligned_cols=80 Identities=20% Similarity=0.211 Sum_probs=54.7
Q ss_pred HhHHHHHHHHHHcCCCCHHHHHHHHHHHhhcCCCC--HHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHH
Q 015709 112 KRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLS--LEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTD 189 (402)
Q Consensus 112 ~r~~~L~ea~~~l~~~~d~~lMk~al~~L~~~~~t--~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~ 189 (402)
+|+..++++|... -..++.-...++...... .+....+|..+..++.-++ ...+...+-++.+.++|.+ ++
T Consensus 67 ~r~~~l~~~l~~~----~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~-~~~i~~~~~l~~~~~~l~~--~~ 139 (148)
T PF08389_consen 67 ERRRELKDALRSN----SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIP-IELIINSNLLNLIFQLLQS--PE 139 (148)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS--HHHHHSSSHHHHHHHHTTS--CC
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCC-HHHhccHHHHHHHHHHcCC--HH
Confidence 5888888888753 234455555555544322 5678889999999999665 3444556678888899854 44
Q ss_pred HHHHHHHHH
Q 015709 190 IRKISAWIL 198 (402)
Q Consensus 190 Ir~~Aa~vL 198 (402)
++..|+.||
T Consensus 140 ~~~~A~~cl 148 (148)
T PF08389_consen 140 LREAAAECL 148 (148)
T ss_dssp CHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 588888876
No 260
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=59.59 E-value=1.1e+02 Score=25.77 Aligned_cols=69 Identities=19% Similarity=0.253 Sum_probs=45.9
Q ss_pred CHHHHHHhcC-CCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC
Q 015709 175 GLSVLVGQLN-HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNN 247 (402)
Q Consensus 175 gl~~Li~lL~-s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~ 247 (402)
.+|.+...|. +..++.|..+..+++.++...|-..+.+ + ..+..+++-...... ...++-+|..+..+.
T Consensus 7 lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l-~-~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 7 LLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVL-N-ALMESILKNWTQETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHH-H-HHHHHHHhccccchh--HHHHHHHHHHHHHcc
Confidence 3677788887 7889999999999999998766443322 1 123333333322222 477888899888665
No 261
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=59.07 E-value=2.5e+02 Score=31.62 Aligned_cols=130 Identities=15% Similarity=0.108 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcC
Q 015709 190 IRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGN 269 (402)
Q Consensus 190 Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s 269 (402)
|-..++..+..+-|-.+.. .++ .|.+..|++-..+.+..||...+.-|.-+.-++...-+-++ .+-...|..=+.+
T Consensus 62 Il~fla~fv~sl~q~d~e~--DlV-~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vf-n~l~e~l~~Rl~D 137 (892)
T KOG2025|consen 62 ILSFLARFVESLPQLDKEE--DLV-AGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVF-NKLNEKLLIRLKD 137 (892)
T ss_pred HHHHHHHHHHhhhccCchh--hHH-HHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHH-HHHHHHHHHHHhc
Confidence 4444455555554433321 122 35677888888887888998888888777654333222222 2223333333443
Q ss_pred CCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCC-ChHHHHHHHHHHHHHhcCC
Q 015709 270 SSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKALAAIKNLLQLR 338 (402)
Q Consensus 270 ~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~dv~E~aL~aL~~L~~~~ 338 (402)
. .+.+|+.|+.+|+.+=.. ..++ +..++..++.++.++ +++||..|+. ++.-++
T Consensus 138 r--ep~VRiqAv~aLsrlQ~d---~~de-------e~~v~n~l~~liqnDpS~EVRRaaLs---nI~vdn 192 (892)
T KOG2025|consen 138 R--EPNVRIQAVLALSRLQGD---PKDE-------ECPVVNLLKDLIQNDPSDEVRRAALS---NISVDN 192 (892)
T ss_pred c--CchHHHHHHHHHHHHhcC---CCCC-------cccHHHHHHHHHhcCCcHHHHHHHHH---hhccCc
Confidence 3 456899999999988421 1121 245677888888876 8899998884 444444
No 262
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=58.48 E-value=40 Score=35.96 Aligned_cols=83 Identities=16% Similarity=0.141 Sum_probs=61.2
Q ss_pred hHHHhcCCHHHHH-H---hcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 015709 168 NDLSKLGGLSVLV-G---QLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSL 243 (402)
Q Consensus 168 ~~l~~lGgl~~Li-~---lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~L 243 (402)
..+.-.|||+.+- . --.+.+...|..|-.+||.+++..|..= .-+.+.+..|.+-|..+.++++...-.|||++
T Consensus 364 ~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~--~~d~~li~~LF~sL~~~~~evr~sIqeALssl 441 (501)
T PF13001_consen 364 RPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLF--SKDLSLIEFLFDSLEDESPEVRVSIQEALSSL 441 (501)
T ss_pred HHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCcccc--cccHHHHHHHHHHhhCcchHHHHHHHHHHHHH
Confidence 3444467888771 0 1234678999999999999999988641 12356788888888777889999989999999
Q ss_pred hcCChhcHH
Q 015709 244 IRNNLAGQE 252 (402)
Q Consensus 244 iR~~~~~~~ 252 (402)
+.++.....
T Consensus 442 ~~af~~~~~ 450 (501)
T PF13001_consen 442 APAFKDLPD 450 (501)
T ss_pred HHHHhcccc
Confidence 887665433
No 263
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=56.90 E-value=1.8e+02 Score=27.61 Aligned_cols=140 Identities=16% Similarity=0.023 Sum_probs=85.6
Q ss_pred HHHHHH-hcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHH
Q 015709 176 LSVLVG-QLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF 254 (402)
Q Consensus 176 l~~Li~-lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f 254 (402)
++.|+. +-+..+++++......|...+.++..+.. -.+..|..+.+.+....+.-++..+..+...++...
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~-----~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f--- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVP-----PVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF--- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchh-----HHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence 445554 44678999999999999999987611111 134566666666665554555555666655544321
Q ss_pred HhcCcHHHHHHh--------hcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhh-cCCChHHHH
Q 015709 255 YVEAGDLMLQDI--------LGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLT-ASADLDLQE 325 (402)
Q Consensus 255 ~~~gGi~~L~~l--------L~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL-~~~d~dv~E 325 (402)
+.++.+... ..++........-.+..+.++|.. .|+ .-..+++.+..+| ...+...+.
T Consensus 74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~-----~p~-----~g~~ll~~ls~~L~~~~~~~~~a 140 (234)
T PF12530_consen 74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCS-----RPD-----HGVDLLPLLSGCLNQSCDEVAQA 140 (234)
T ss_pred ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHh-----Chh-----hHHHHHHHHHHHHhccccHHHHH
Confidence 222222222 111222344445556788888853 333 2345678888889 677888899
Q ss_pred HHHHHHHHHhc
Q 015709 326 KALAAIKNLLQ 336 (402)
Q Consensus 326 ~aL~aL~~L~~ 336 (402)
-++.++..|..
T Consensus 141 lale~l~~Lc~ 151 (234)
T PF12530_consen 141 LALEALAPLCE 151 (234)
T ss_pred HHHHHHHHHHH
Confidence 99999998874
No 264
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=56.09 E-value=1.5e+02 Score=33.54 Aligned_cols=140 Identities=16% Similarity=0.128 Sum_probs=90.6
Q ss_pred HhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcH
Q 015709 181 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 260 (402)
Q Consensus 181 ~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi 260 (402)
..|.+..-+||..|+..+..++.-.- +++.. ...+|.++.+...++=-.|...+.+|..++--. -+.|....-+
T Consensus 525 ~~l~d~v~~Ir~~aa~~l~~l~~~~G--~~w~~-~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~---g~ei~~~~Ll 598 (759)
T KOG0211|consen 525 TWLPDHVYSIREAAARNLPALVETFG--SEWAR-LEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVL---GQEITCEDLL 598 (759)
T ss_pred hhhhhhHHHHHHHHHHHhHHHHHHhC--cchhH-HHhhHHHHHHhcCcccchhhHHHHHHHHHHHHh---ccHHHHHHHh
Confidence 34555567899999998888886443 22222 235788888777765556777777777554321 1234444556
Q ss_pred HHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhc
Q 015709 261 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 336 (402)
Q Consensus 261 ~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~ 336 (402)
+++..+..++ .+.+|.+++..+..+.. -......+.-+.+.+..+-...|.|++-.|..|...+..
T Consensus 599 p~~~~l~~D~--vanVR~nvak~L~~i~~--------~L~~~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l 664 (759)
T KOG0211|consen 599 PVFLDLVKDP--VANVRINVAKHLPKILK--------LLDESVRDEEVLPLLETLSSDQELDVRYRAILAFGSIEL 664 (759)
T ss_pred HHHHHhccCC--chhhhhhHHHHHHHHHh--------hcchHHHHHHHHHHHHHhccCcccchhHHHHHHHHHHHH
Confidence 7777777776 45678899999998863 222344555566666666666688888888777776643
No 265
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=55.44 E-value=1e+02 Score=31.41 Aligned_cols=81 Identities=20% Similarity=0.100 Sum_probs=51.5
Q ss_pred cHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcC-CChHHHHHHHHHHHHHhcC
Q 015709 259 GDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS-ADLDLQEKALAAIKNLLQL 337 (402)
Q Consensus 259 Gi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~-~d~dv~E~aL~aL~~L~~~ 337 (402)
=+..|.+-+.+. .+..+|+-++--|..-| .++.++..|..+|+++.+.+.+.. ++.++---+..++..+...
T Consensus 22 ev~ylld~l~~~-~~~s~Rr~sll~La~K~------~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~ 94 (361)
T PF07814_consen 22 EVEYLLDGLESS-SSSSVRRSSLLELASKC------ADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSR 94 (361)
T ss_pred HHHHHHhhcccC-CCccHHHHHHHHHHHHh------CCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHcc
Confidence 456666667733 45567776655555555 368899999999999999999954 3443555555555555544
Q ss_pred ChhhHHHHH
Q 015709 338 RTTEALVLK 346 (402)
Q Consensus 338 ~~~~~~~~~ 346 (402)
.......+.
T Consensus 95 d~~~~~l~~ 103 (361)
T PF07814_consen 95 DGLNMHLLL 103 (361)
T ss_pred CCcchhhhh
Confidence 333444433
No 266
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.34 E-value=7.2 Score=39.82 Aligned_cols=55 Identities=7% Similarity=-0.001 Sum_probs=46.9
Q ss_pred HHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015709 236 ALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (402)
Q Consensus 236 Al~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~ 290 (402)
.+.-|++++..|+.+++.+.+.||++++..-..-+..++-++.....++..|..+
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~n 430 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQN 430 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhc
Confidence 5667899999999999999999999998877664445788999999999999853
No 267
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=54.87 E-value=2.3e+02 Score=28.13 Aligned_cols=60 Identities=13% Similarity=0.132 Sum_probs=33.6
Q ss_pred cHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHH
Q 015709 259 GDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNL 334 (402)
Q Consensus 259 Gi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L 334 (402)
.++.|...|....-.+-+|..|+.+|..++. ...++.|.+.+..++.-+++-+..+|..+
T Consensus 219 ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~----------------e~~~~vL~e~~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 219 AIPSLIKVLLDETEHPMVRHEAAEALGAIAD----------------EDCVEVLKEYLGDEERVVRESCEVALDML 278 (289)
T ss_pred hhHHHHHHHHhhhcchHHHHHHHHHHHhhcC----------------HHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 3455555555443455566666666666552 23455566666666666666666555543
No 268
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=54.62 E-value=1.2e+02 Score=25.04 Aligned_cols=67 Identities=16% Similarity=0.125 Sum_probs=49.3
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCC-hHhHHHHHHcCcHHHHHHhhcC------CCHHHHHHHHHHHHH
Q 015709 176 LSVLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKS------SFVEEAVKALYTVSS 242 (402)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNN-p~~Q~~~le~g~L~~Ll~LL~s------~~~~vr~kAl~ALS~ 242 (402)
+..|..-|+++++.++-.|..+|=.+++|. +.++..+.....+..++++... .+..+|.++++.+..
T Consensus 39 ~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~ 112 (115)
T cd00197 39 VDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQL 112 (115)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHH
Confidence 334555567789999999999999999985 5688888887777777664111 246788888887754
No 269
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.61 E-value=84 Score=35.35 Aligned_cols=145 Identities=11% Similarity=0.094 Sum_probs=87.0
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcC-CCCHHHHHHHHHHHHHHhcCChHhH
Q 015709 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLN-HPDTDIRKISAWILGKASQNNPLVQ 209 (402)
Q Consensus 131 ~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~-s~~~~Ir~~Aa~vLg~~aqNNp~~Q 209 (402)
.+||++-....+- +.|-|+...+.+.-++.... .-+.+.+.-|.+.|. .+.-+-+.....+|..++..||..+
T Consensus 354 rLm~qI~~fv~di--sDeFKivvvdai~sLc~~fp----~k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsK 427 (865)
T KOG1078|consen 354 RLMKQISSFVSDI--SDEFKIVVVDAIRSLCLKFP----RKHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSK 427 (865)
T ss_pred HHHHHHHHHHHhc--cccceEEeHHHHHHHHhhcc----HHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchh
Confidence 4455544444433 44666666666666554332 122344555556663 3556677777888888888888777
Q ss_pred HHHHHc-----------CcHHHHHHhhcC---------------------CCHHHHHHHHHHHHHHhcCChhcHHHHHhc
Q 015709 210 KQVLEL-----------GALSKLMKMVKS---------------------SFVEEAVKALYTVSSLIRNNLAGQEMFYVE 257 (402)
Q Consensus 210 ~~~le~-----------g~L~~Ll~LL~s---------------------~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~ 257 (402)
+..+++ ..--.++++|-. ++.-+|..|+.|++.+..+++. ...
T Consensus 428 e~~L~~LCefIEDce~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~-----l~~ 502 (865)
T KOG1078|consen 428 ERGLEHLCEFIEDCEFTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVV-----LLP 502 (865)
T ss_pred hHHHHHHHHHHHhccchHHHHHHHHHHhccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCC-----ccc
Confidence 765543 111223333321 1334567788888877644432 334
Q ss_pred CcHHHHHHhhcCCCccHHHHHHHHHHHHHHh
Q 015709 258 AGDLMLQDILGNSSFEIRLHRKAVSLVGDLA 288 (402)
Q Consensus 258 gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~ 288 (402)
.....|.+|+.+. |..+|-+|.+.+.++-
T Consensus 503 sI~vllkRc~~D~--DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 503 SILVLLKRCLNDS--DDEVRDRATFYLKNLE 531 (865)
T ss_pred cHHHHHHHHhcCc--hHHHHHHHHHHHHHhh
Confidence 5567788888875 5679999999999886
No 270
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.45 E-value=1.2e+02 Score=32.55 Aligned_cols=168 Identities=13% Similarity=0.033 Sum_probs=90.3
Q ss_pred HcCcHHHHHHhhc----CCCHHHHHHHHHHHHHHhcCChhcHHHHHhcC--cHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q 015709 214 ELGALSKLMKMVK----SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA--GDLMLQDILGNSSFEIRLHRKAVSLVGDL 287 (402)
Q Consensus 214 e~g~L~~Ll~LL~----s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~g--Gi~~L~~lL~s~~~d~klq~kA~~lL~~L 287 (402)
+.|.+.-++..+. +++..+|.-|+..|+++..+.|. +...++ -+..++..|.++. +..++-.++.++.-+
T Consensus 252 ~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~---kv~th~~~~ldaii~gL~D~~-~~~V~leam~~Lt~v 327 (533)
T KOG2032|consen 252 KTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPD---KVRTHKTTQLDAIIRGLYDDL-NEEVQLEAMKCLTMV 327 (533)
T ss_pred ccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcH---HHHHhHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHH
Confidence 4455555444433 33456788888888888877554 444444 3444555555553 355788888888876
Q ss_pred hhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChh-hHHHHHh--cCCcHHHHHHHHHHhHH
Q 015709 288 AKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTT-EALVLKD--FCGLDTALERLRQQLQE 364 (402)
Q Consensus 288 ~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~-~~~~~~~--~~GL~~~L~~L~~~~~~ 364 (402)
... ..+.+..+.+. .+.-.+..+..+.+.+++-.+..+...|+..... ++..|.+ .+++.+.+--|+.....
T Consensus 328 ~~~---~~~~~l~~~~l--~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~ 402 (533)
T KOG2032|consen 328 LEK---ASNDDLESYLL--NIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPY 402 (533)
T ss_pred HHh---hhhcchhhhch--hHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChH
Confidence 532 11222222222 2333456667788999999988888887765321 3333321 12333333222221111
Q ss_pred hhh---hhhHhhhHHHHHHHHHHHHHHHHHHh
Q 015709 365 VML---EEDQRDYAMDVEALRREVELIFFRKL 393 (402)
Q Consensus 365 l~~---~e~~~~y~~~l~~~~~e~~~~~~~~~ 393 (402)
... .+.+..|.. + .|+|+-.+|++-|
T Consensus 403 va~ACr~~~~~c~p~-l--~rke~~~~~q~~l 431 (533)
T KOG2032|consen 403 VARACRSELRTCYPN-L--VRKELYHLFQESL 431 (533)
T ss_pred HHHHHHHHHHhcCch-h--HHHHHHHHHhhhh
Confidence 111 343444443 4 5677777777555
No 271
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=53.00 E-value=1.2e+02 Score=31.04 Aligned_cols=94 Identities=16% Similarity=0.044 Sum_probs=57.7
Q ss_pred cCCCCHHHHHHHHHHHHHccCCCCch-------------hHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHh
Q 015709 142 NSTLSLEDSQRALQELLILVEPIDNA-------------NDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLV 208 (402)
Q Consensus 142 ~~~~t~e~k~~AL~~L~~Lve~iDnA-------------~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~ 208 (402)
++..+...|..|+.-+.-+....+.. .+|...-.+|-|. -=.+..|=+|+.|++.+.+...-=|+
T Consensus 264 ~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~- 341 (370)
T PF08506_consen 264 NPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPK- 341 (370)
T ss_dssp -TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-H-
T ss_pred CCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCH-
Confidence 45556677888888777776655332 2222222222222 11246788999999999999865443
Q ss_pred HHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHH
Q 015709 209 QKQVLELGALSKLMKMVKSSFVEEAVKALYTV 240 (402)
Q Consensus 209 Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~AL 240 (402)
+.+. +.+|.++..|.+++..|+.-|.+||
T Consensus 342 -~~l~--~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 342 -EQLL--QIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp -HHHH--HHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred -HHHH--HHHHHHHHHhCCCCcchhhhhhhhC
Confidence 2222 4799999999998888888888875
No 272
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.88 E-value=1.3e+02 Score=34.06 Aligned_cols=94 Identities=16% Similarity=0.180 Sum_probs=64.7
Q ss_pred CHHHHHHHHHHHHHccCCCCchhHH----HhcCC-----------HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHH
Q 015709 146 SLEDSQRALQELLILVEPIDNANDL----SKLGG-----------LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK 210 (402)
Q Consensus 146 t~e~k~~AL~~L~~Lve~iDnA~~l----~~lGg-----------l~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~ 210 (402)
.++.|+.+|..|.+.+|+-+.-..- +-+|- +..+.+.+--.+.-+|+.|..+++++..+++..+.
T Consensus 423 ~pdsKe~~L~~LCefIEDce~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l~~ 502 (865)
T KOG1078|consen 423 NPDSKERGLEHLCEFIEDCEFTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVLLP 502 (865)
T ss_pred CcchhhHHHHHHHHHHHhccchHHHHHHHHHHhccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCccc
Confidence 3578999999999999886544332 22220 00011111114677999999999999977775554
Q ss_pred HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 015709 211 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLI 244 (402)
Q Consensus 211 ~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~Li 244 (402)
. ....|.+.+.+.+.++|-.|-+++.++-
T Consensus 503 s-----I~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 503 S-----ILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred c-----HHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 3 3456778888888999999999999886
No 273
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=51.07 E-value=1.1e+02 Score=30.04 Aligned_cols=118 Identities=13% Similarity=0.074 Sum_probs=70.6
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcH-HHHHhcCcHHHHHHhhcC----------CCccHHHHHHHHHHHH
Q 015709 217 ALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQ-EMFYVEAGDLMLQDILGN----------SSFEIRLHRKAVSLVG 285 (402)
Q Consensus 217 ~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~-~~f~~~gGi~~L~~lL~s----------~~~d~klq~kA~~lL~ 285 (402)
.+|+++.++.+.++++|.+.+..+..++.+.+... ..+...|-.+++.+.+.. ......+-..|--++.
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~ 199 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL 199 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence 68999999999999999999999999998866544 235666756555554431 1134567777777777
Q ss_pred HHhhcccccCCCCc----chhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHh
Q 015709 286 DLAKCQLENMHKVE----PPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL 335 (402)
Q Consensus 286 ~L~~~~l~~~~~~~----~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~ 335 (402)
.|+.-.. ..+... ...+..+|++..+...-+.+.+.++...+..+..+.
T Consensus 200 ~L~~~~~-~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i 252 (282)
T PF10521_consen 200 SLLKTQE-NDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPII 252 (282)
T ss_pred HHHHhhc-cCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHH
Confidence 7764210 011111 222333343333333223334677777766655554
No 274
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=49.90 E-value=2.2e+02 Score=29.45 Aligned_cols=96 Identities=15% Similarity=0.108 Sum_probs=61.9
Q ss_pred HHHHHHHHccCCCCc--hhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCC
Q 015709 152 RALQELLILVEPIDN--ANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF 229 (402)
Q Consensus 152 ~AL~~L~~Lve~iDn--A~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~ 229 (402)
...+-|..++++.+. +..+....-+..|+.++.|+++.-|.....++-.+-...+..+..+.+. .-..+.+.+....
T Consensus 109 ~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~-i~~~~~~fi~e~~ 187 (409)
T PF01603_consen 109 LVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKS-INNIFYRFIYETE 187 (409)
T ss_dssp HHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHH-HHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHhcCcc
Confidence 456666667766543 6667777788899999999999999999999999888777666665543 3344444444333
Q ss_pred H-HHHHHHHHHHHHHhcCCh
Q 015709 230 V-EEAVKALYTVSSLIRNNL 248 (402)
Q Consensus 230 ~-~vr~kAl~ALS~LiR~~~ 248 (402)
. ......|.-++++++++.
T Consensus 188 ~~~gI~elLeil~sii~gf~ 207 (409)
T PF01603_consen 188 RHNGIAELLEILGSIINGFA 207 (409)
T ss_dssp --STHHHHHHHHHHHHTT--
T ss_pred cccCHHHHHHHHHHHHhccC
Confidence 2 234555566666666543
No 275
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=49.32 E-value=4.3e+02 Score=32.36 Aligned_cols=137 Identities=20% Similarity=0.172 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHhc---CChHhHHHHHHcCcHHHHHHhhcCC---C-----HHHHHHHHHHHHHHhcCChhc-------
Q 015709 189 DIRKISAWILGKASQ---NNPLVQKQVLELGALSKLMKMVKSS---F-----VEEAVKALYTVSSLIRNNLAG------- 250 (402)
Q Consensus 189 ~Ir~~Aa~vLg~~aq---NNp~~Q~~~le~g~L~~Ll~LL~s~---~-----~~vr~kAl~ALS~LiR~~~~~------- 250 (402)
.....|..|||.++. +|-+.-..+... .-+.+..+++. + ...-...++.++-++|++.-.
T Consensus 1136 a~V~~~vsCl~sl~~k~~~~~~~v~~cf~~--~~k~le~~k~s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~~~~~g~ 1213 (1692)
T KOG1020|consen 1136 ATVVEAVSCLGSLATKRTDGAKVVKACFSC--YLKLLEVIKSSNNENADIVNFPKLQRSIFTLGLLSRYFDFPKPSNDGK 1213 (1692)
T ss_pred HHHHHHHHHHHHHHhhhccchHHHHHHHHH--HHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHhccCCCccCCCc
Confidence 344678888888886 444444433321 22333333332 1 133568999999999964321
Q ss_pred ----HHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChH--HH
Q 015709 251 ----QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLD--LQ 324 (402)
Q Consensus 251 ----~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~d--v~ 324 (402)
.-.++..+-+..|.-..+.. +..+|++|+-.++.+|.. +++ .+.+..+...+...|...+.+ .+
T Consensus 1214 ~~~~~~~~~~e~v~~lL~~f~k~~--~~~lR~~al~~Lg~~ci~-----hp~---l~~~~~v~nly~~ila~~n~~~~~k 1283 (1692)
T KOG1020|consen 1214 TFLQEGETLKEKVLILLMYFSKDK--DGELRRKALINLGFICIQ-----HPS---LFTSREVLNLYDEILADDNSDIKSK 1283 (1692)
T ss_pred cchhhhhhHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHhh-----Cch---hhhhHHHHHHHHHHHhhhcccHHHH
Confidence 11123334444444444543 567999999999999953 333 556667777777778776433 35
Q ss_pred HHHHHHHHHHhcC
Q 015709 325 EKALAAIKNLLQL 337 (402)
Q Consensus 325 E~aL~aL~~L~~~ 337 (402)
-.++..+.-++..
T Consensus 1284 i~~l~n~~~yL~e 1296 (1692)
T KOG1020|consen 1284 IQLLQNLELYLLE 1296 (1692)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666653
No 276
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=49.30 E-value=90 Score=25.84 Aligned_cols=89 Identities=16% Similarity=0.238 Sum_probs=61.2
Q ss_pred CCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHH
Q 015709 185 HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQ 264 (402)
Q Consensus 185 s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~ 264 (402)
.+.+.|+..+.|++.+.-. ... .+..+.+-+...++.-+..++|-+-+++++...-...+......+.+.
T Consensus 16 ~S~~~I~~lt~~a~~~~~~-----a~~-----iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~ 85 (114)
T cd03562 16 NSQPSIQTLTKLAIENRKH-----AKE-----IVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFL 85 (114)
T ss_pred ccHHHHHHHHHHHHHHHHH-----HHH-----HHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 3668888888888887632 122 234445555555667788999999999999755555555556688888
Q ss_pred HhhcCCCccHHHHHHHHHHHH
Q 015709 265 DILGNSSFEIRLHRKAVSLVG 285 (402)
Q Consensus 265 ~lL~s~~~d~klq~kA~~lL~ 285 (402)
...... ++++|.|...++.
T Consensus 86 ~~~~~~--~~~~r~kl~rl~~ 104 (114)
T cd03562 86 DAYEKV--DEKTRKKLERLLN 104 (114)
T ss_pred HHHHhC--CHHHHHHHHHHHH
Confidence 887754 6677777666554
No 277
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=48.41 E-value=32 Score=38.98 Aligned_cols=73 Identities=11% Similarity=0.111 Sum_probs=54.3
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh-HhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh
Q 015709 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNP-LVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNL 248 (402)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp-~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~ 248 (402)
.+.++..+++.+|.++......+....+.++ .+=....-.+.+|.++...++.+.+||..|+-+++.+.|.+.
T Consensus 373 ~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~G 446 (815)
T KOG1820|consen 373 SEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHG 446 (815)
T ss_pred HHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhh
Confidence 4556677888888888887777777666555 222222234678999999988889999999999999988753
No 278
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.32 E-value=86 Score=33.35 Aligned_cols=66 Identities=18% Similarity=0.201 Sum_probs=53.0
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhcCChH-hHHHHHHcCcHHHHHHhhcCC-C-HHHHHHHHHHHHH
Q 015709 177 SVLVGQLNHPDTDIRKISAWILGKASQNNPL-VQKQVLELGALSKLMKMVKSS-F-VEEAVKALYTVSS 242 (402)
Q Consensus 177 ~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~-~Q~~~le~g~L~~Ll~LL~s~-~-~~vr~kAl~ALS~ 242 (402)
..|-+-|++.++.++..|+.+|-+|++|+-+ +...|.+.++++.+|++.+.. . ..||.|++..|=.
T Consensus 41 ralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~ 109 (470)
T KOG1087|consen 41 RALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDT 109 (470)
T ss_pred HHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHH
Confidence 3455667777889999999999999999654 666788899999999999986 3 4688888876654
No 279
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=47.15 E-value=4.1e+02 Score=29.71 Aligned_cols=117 Identities=18% Similarity=0.060 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHh-cCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhh
Q 015709 147 LEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQ-LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV 225 (402)
Q Consensus 147 ~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~l-L~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL 225 (402)
...+..+|..+--..+.+| -.+++--.+|.|-++ +++++..++..++-|++.++|+- +...-..-+.++.+..
T Consensus 403 ~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~l----D~~~v~d~~lpi~~~~ 476 (700)
T KOG2137|consen 403 VQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRL----DKAAVLDELLPILKCI 476 (700)
T ss_pred hhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHh
Confidence 4456677888877778888 556666677777664 57789999999999999999643 3222223456666666
Q ss_pred cCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCC
Q 015709 226 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS 270 (402)
Q Consensus 226 ~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~ 270 (402)
+..++.+....+...-+++-..+.+ ..+..++.++.+..+...+
T Consensus 477 ~~~dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~ 520 (700)
T KOG2137|consen 477 KTRDPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAP 520 (700)
T ss_pred cCCCcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhcc
Confidence 6666766555444444444333333 5566777888888776654
No 280
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=46.93 E-value=39 Score=40.12 Aligned_cols=145 Identities=14% Similarity=0.132 Sum_probs=92.4
Q ss_pred cCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHc--CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhc
Q 015709 173 LGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL--GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG 250 (402)
Q Consensus 173 lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~--g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~ 250 (402)
+|.+|.|-.-|.+++...|..|..++|-+.+.+. .|-. +. ......+.-+.+-+.++|.+++-.++.++-++|..
T Consensus 258 ~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~-~~l~--~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~ 334 (1266)
T KOG1525|consen 258 LAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKD-SQLS--ETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSI 334 (1266)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcch-hhhc--ccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchh
Confidence 5677888888889999999999999999997532 3322 11 23344455566667899999999999888887765
Q ss_pred HHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHH--HHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHH
Q 015709 251 QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLV--GDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKAL 328 (402)
Q Consensus 251 ~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL--~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL 328 (402)
.... +-...+....- |+.++++..-.+ .... ...-.+... ++..+.+-+......||..|+
T Consensus 335 ~~~~---~~~~~l~~~~~----D~~~rir~~v~i~~~~v~---------~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am 397 (1266)
T KOG1525|consen 335 AKAS---TILLALRERDL----DEDVRVRTQVVIVACDVM---------KFKLVYIPL-LLKLVAERLRDKKIKVRKQAM 397 (1266)
T ss_pred hhHH---HHHHHHHhhcC----ChhhhheeeEEEEEeehh---------HhhhhhhHH-HHHHHHHHHhhhhHHHHHHHH
Confidence 4432 12222222222 333443332222 2111 111122223 777778888888999999999
Q ss_pred HHHHHHhcC
Q 015709 329 AAIKNLLQL 337 (402)
Q Consensus 329 ~aL~~L~~~ 337 (402)
..|..+...
T Consensus 398 ~~LaqlYk~ 406 (1266)
T KOG1525|consen 398 NGLAQLYKN 406 (1266)
T ss_pred HHHHHHHHH
Confidence 999988763
No 281
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=46.82 E-value=1.3e+02 Score=33.33 Aligned_cols=58 Identities=14% Similarity=-0.003 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHh
Q 015709 230 VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLA 288 (402)
Q Consensus 230 ~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~ 288 (402)
+..|..++.-||.++|..|+....+.+..-+.-|..+|+.+. +.-+-.-|+.+|.-|+
T Consensus 82 ~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~-~~~~~~~al~~LimlL 139 (668)
T PF04388_consen 82 PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDT-SITVVSSALLVLIMLL 139 (668)
T ss_pred chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcc-cHHHHHHHHHHHHHHh
Confidence 456889999999999999999999999999999999999763 5667777777777776
No 282
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=46.28 E-value=2.3e+02 Score=25.81 Aligned_cols=115 Identities=15% Similarity=0.117 Sum_probs=66.6
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHH
Q 015709 134 QIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVL 213 (402)
Q Consensus 134 k~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~l 213 (402)
+..++...++ +...+..|++.+.-.+.+= -.+..-.+|.||.+..++++.||..|..++..+.+.+|..=..=+
T Consensus 11 ~~Il~~~~~~--~~~vr~~Al~~l~~il~qG----LvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~~ 84 (187)
T PF12830_consen 11 KNILELCLSS--DDSVRLAALQVLELILRQG----LVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESRY 84 (187)
T ss_pred HHHHHHHhCC--CHHHHHHHHHHHHHHHhcC----CCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3444443333 3467788888887655531 112233789999999999999999999999999987765322222
Q ss_pred HcCcHHHHHHh---hcCCCHH-H---HHHHHHHHHHHhcCChhcHHHHH
Q 015709 214 ELGALSKLMKM---VKSSFVE-E---AVKALYTVSSLIRNNLAGQEMFY 255 (402)
Q Consensus 214 e~g~L~~Ll~L---L~s~~~~-v---r~kAl~ALS~LiR~~~~~~~~f~ 255 (402)
-. |+..-.++ +..+... . ...-+..+-.+++++...+..|+
T Consensus 85 ~~-gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~Fl 132 (187)
T PF12830_consen 85 SE-GIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKFL 132 (187)
T ss_pred HH-HHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHHH
Confidence 11 22322222 2221111 1 23334444456666666666664
No 283
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=44.84 E-value=4.4e+02 Score=28.53 Aligned_cols=133 Identities=10% Similarity=0.038 Sum_probs=92.0
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHhcC---ChHhHHHHHHcCcHHHHHHhhcCCC------HH-HHHHHHHHHHHHhcCCh
Q 015709 179 LVGQLNHPDTDIRKISAWILGKASQN---NPLVQKQVLELGALSKLMKMVKSSF------VE-EAVKALYTVSSLIRNNL 248 (402)
Q Consensus 179 Li~lL~s~~~~Ir~~Aa~vLg~~aqN---Np~~Q~~~le~g~L~~Ll~LL~s~~------~~-vr~kAl~ALS~LiR~~~ 248 (402)
+..+++..+.+-|..|...+..++.| |...+..+.+.=|++.+-+++.+.+ +. .+.-++.-|.|.+|.-+
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 55667777888899999999999998 4456777888888898889888743 22 37778888899988643
Q ss_pred hcHHHHHhcCcHHHHHHhhcCCC-cc----HHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcC
Q 015709 249 AGQEMFYVEAGDLMLQDILGNSS-FE----IRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS 318 (402)
Q Consensus 249 ~~~~~f~~~gGi~~L~~lL~s~~-~d----~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~ 318 (402)
-+... --.+.|+.|..++.... .| ..+...+-.+++..+. .+.-...++..|.++.+.+.-.-
T Consensus 96 lAsh~-~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~------~e~G~~~Lia~G~~~~~~Q~y~~ 163 (698)
T KOG2611|consen 96 LASHE-EMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVAT------AEAGLMTLIASGGLRVIAQMYEL 163 (698)
T ss_pred hccCH-HHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhc------CCchhHHHHhcCchHHHHHHHhC
Confidence 33221 11367899999886431 11 2244555566666653 35556678888999999876443
No 284
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=44.28 E-value=96 Score=35.95 Aligned_cols=107 Identities=12% Similarity=0.104 Sum_probs=78.3
Q ss_pred cHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccC
Q 015709 217 ALSKLMKMVKSS-FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM 295 (402)
Q Consensus 217 ~L~~Ll~LL~s~-~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~ 295 (402)
++..++.-++.+ ..+++..|+.-+-+...++.. ...| ..|+.+|..+..++ -+.++.+++..++-+..-
T Consensus 577 V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~-~~~f--e~~L~iLq~lCrd~--~vsvrk~~~~Sltel~~~----- 646 (1529)
T KOG0413|consen 577 VVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDE-ASKF--EVVLSILQMLCRDR--MVSVRKTGADSLTELMLR----- 646 (1529)
T ss_pred HHHHHHHHhccCCCcccchhhHHHHHHHHhccch-hhcc--hhHHHHHHHHhcCc--chHHHHHHHHHHHHHHhh-----
Confidence 566677777744 467888888888887766543 2223 23588999999887 455899999999988742
Q ss_pred CCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHh
Q 015709 296 HKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL 335 (402)
Q Consensus 296 ~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~ 335 (402)
+|... -++..|+..|+.+++..+.+++|+|+..+-.++
T Consensus 647 ~pr~~--~~~~~wl~~li~~~~d~es~v~e~a~~~i~k~l 684 (1529)
T KOG0413|consen 647 DPRLF--SLSSKWLHTLISMLNDTESDVTEHARKLIMKVL 684 (1529)
T ss_pred Cchhh--hhhHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 33322 246789999999999999999999999777654
No 285
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=43.85 E-value=4.4e+02 Score=28.24 Aligned_cols=143 Identities=11% Similarity=0.091 Sum_probs=79.0
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhc--CCHHHHHHhcCCCC-HHHHHHHHHHHHHHhcCChHh
Q 015709 132 LIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKL--GGLSVLVGQLNHPD-TDIRKISAWILGKASQNNPLV 208 (402)
Q Consensus 132 lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~l--Ggl~~Li~lL~s~~-~~Ir~~Aa~vLg~~aqNNp~~ 208 (402)
++--.+++|.+.. +.-.|.-||..|...+.+- +..|.+. =.+..++..-+.++ .-++..+--|+.++++..|..
T Consensus 330 iL~~l~EvL~d~~-~~~~k~laLrvL~~ml~~Q--~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~ 406 (516)
T KOG2956|consen 330 ILLLLLEVLSDSE-DEIIKKLALRVLREMLTNQ--PARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ 406 (516)
T ss_pred HHHHHHHHHccch-hhHHHHHHHHHHHHHHHhc--hHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh
Confidence 4444556666533 3456788888888877542 1112211 13445555554444 455555556677777777743
Q ss_pred HHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHH--hcCcHHHHHHhhcCCCccHHHHHHHHHHHHH
Q 015709 209 QKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFY--VEAGDLMLQDILGNSSFEIRLHRKAVSLVGD 286 (402)
Q Consensus 209 Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~--~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~ 286 (402)
. |..+..++-+.+.+....++-.+--++..-+ ++.+. --.-.|.+++...+. +..+|.-|+|+|-+
T Consensus 407 -~-------I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~--~EeL~~ll~diaP~~iqay~S~--SS~VRKtaVfCLVa 474 (516)
T KOG2956|consen 407 -C-------IVNISPLILTADEPRAVAVIKMLTKLFERLS--AEELLNLLPDIAPCVIQAYDST--SSTVRKTAVFCLVA 474 (516)
T ss_pred -H-------HHHHhhHHhcCcchHHHHHHHHHHHHHhhcC--HHHHHHhhhhhhhHHHHHhcCc--hHHhhhhHHHhHHH
Confidence 2 2233333333444444444444444443321 22222 235677888888876 45589999999998
Q ss_pred Hhh
Q 015709 287 LAK 289 (402)
Q Consensus 287 L~~ 289 (402)
+..
T Consensus 475 mv~ 477 (516)
T KOG2956|consen 475 MVN 477 (516)
T ss_pred HHH
Confidence 874
No 286
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=42.37 E-value=1.7e+02 Score=25.32 Aligned_cols=91 Identities=12% Similarity=0.106 Sum_probs=55.9
Q ss_pred HHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhC-CcHHHHH
Q 015709 235 KALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDR-FFLKSVV 313 (402)
Q Consensus 235 kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~-g~v~~Lv 313 (402)
-.+--|+.++++++..... ..+.|..=|+++ ++.++.|++.+|.+||.. +++.++..++++ -.|+.+.
T Consensus 20 y~~~Eia~~t~~s~~~~~e-----i~d~L~kRL~~~--~~hVK~K~Lrilk~l~~~----G~~~f~~~~~~~~~~Ik~~~ 88 (122)
T cd03572 20 YLYEEIAKLTRKSVGSCQE-----LLEYLLKRLKRS--SPHVKLKVLKIIKHLCEK----GNSDFKRELQRNSAQIRECA 88 (122)
T ss_pred HHHHHHHHHHHcCHHHHHH-----HHHHHHHHhcCC--CCcchHHHHHHHHHHHhh----CCHHHHHHHHHhHHHHHHHH
Confidence 3444677787776554443 346677778775 466889999999999974 344555555443 3444444
Q ss_pred HhhcCC--------ChHHHHHHHHHHHHHhc
Q 015709 314 DLTASA--------DLDLQEKALAAIKNLLQ 336 (402)
Q Consensus 314 ~lL~~~--------d~dv~E~aL~aL~~L~~ 336 (402)
+.=..+ ...||+.|-.++..|.+
T Consensus 89 ~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if~ 119 (122)
T cd03572 89 NYKGPPDPLKGDSLNEKVREEAQELIKAIFS 119 (122)
T ss_pred HcCCCCCcccCcchhHHHHHHHHHHHHHHhc
Confidence 443322 23577777776666654
No 287
>KOG1791 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.16 E-value=5.2e+02 Score=31.74 Aligned_cols=220 Identities=17% Similarity=0.148 Sum_probs=116.8
Q ss_pred HHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcC--C--hHhHH----------------------------------
Q 015709 169 DLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQN--N--PLVQK---------------------------------- 210 (402)
Q Consensus 169 ~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqN--N--p~~Q~---------------------------------- 210 (402)
-|+..|.+.++...+.+.++.+|..|+||+...-.. | .+.|.
T Consensus 1434 ~fvs~~lLa~~F~~lSS~D~~mr~la~~~lqi~~dHLe~l~ek~~a~~~ll~L~~l~qng~~e~~~Rl~si~alF~A~~~ 1513 (1758)
T KOG1791|consen 1434 IFVSRGLLALLFKGLSSDDPSMRKLAYWVLQIFLDHLENLLEKKQAQFNLLYLSCLAQNGSRESDPRLISICALFIAFFS 1513 (1758)
T ss_pred hhhhcccHHHHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCCcchhhHHHHHHHHHH
Confidence 889999999999999999999999999998544321 0 11111
Q ss_pred ---------------------HHHHcCcHHHHHHhhcCCCH---HHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHh
Q 015709 211 ---------------------QVLELGALSKLMKMVKSSFV---EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDI 266 (402)
Q Consensus 211 ---------------------~~le~g~L~~Ll~LL~s~~~---~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~l 266 (402)
.+++..++|.+-+.+.+... ..|.-.+.-++..++.++. .+.....|+...+...
T Consensus 1514 ~ill~Ps~~ly~~In~~L~~s~~vdlq~iP~F~~ffySs~~e~~t~R~Wvl~LV~~glks~~D-~ql~~~~~~~~~~lsf 1592 (1758)
T KOG1791|consen 1514 DILLVPSEGLYFPINGLLLSSKIVDLQGIPIFHRFFYSSVFEHHTEREWVLELVSKGLKSCPD-YQLLQIRNIFETLLSF 1592 (1758)
T ss_pred HHHcCCccccchhHHHHHHhhhhcccCCCccHHHHHHhccccccchhhhhHHHHHHHhcCchh-hhHHhhcCcceEeehh
Confidence 11111233333333333322 1355556666666665433 4444566777777777
Q ss_pred hcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCC--ChHHHHH-HHHHHHHHhcCChhhHH
Q 015709 267 LGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEK-ALAAIKNLLQLRTTEAL 343 (402)
Q Consensus 267 L~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~--d~dv~E~-aL~aL~~L~~~~~~~~~ 343 (402)
..++=.+...+ .|+++-|.... .........+...|+...+.+++.++ .+-..+. ....+..+-...-+.++
T Consensus 1593 ~sS~l~~~~S~---~LIL~~L~~~V--k~p~~a~~mle~~Gl~sWi~niI~s~~~k~~~~~~l~~~v~~~l~~aewd~~~ 1667 (1758)
T KOG1791|consen 1593 YSSPLASEESK---RLILATLQKGV--KFPFYAYEMLEVPGLFSWILNIIPSSFLKPVLLKALVISVLKVLWVAEWDDQR 1667 (1758)
T ss_pred hcchhHHHHHH---HHHHHHHHhcC--CCcHHHHHHHhcccHHHHHHHhccccccchHHHhhhHHHHHHHHHHhHHHhhh
Confidence 76641121111 14445444321 12234556677889999999999987 3333333 45555555443101111
Q ss_pred HHH-hcCCcHHHHHHHHHHh----------HHhhh-hhhHhhhHHHHHHHHHHHHHHHHHHhh
Q 015709 344 VLK-DFCGLDTALERLRQQL----------QEVML-EEDQRDYAMDVEALRREVELIFFRKLD 394 (402)
Q Consensus 344 ~~~-~~~GL~~~L~~L~~~~----------~~l~~-~e~~~~y~~~l~~~~~e~~~~~~~~~~ 394 (402)
.-. ..-|....++.++-.. ....+ .-+|+--+.....+++|+-.++..+++
T Consensus 1668 l~~~~~q~~~~~~~l~~i~~~s~~~i~~~l~~~~tl~~e~~~t~~s~~rl~~~v~~~~k~~~~ 1730 (1758)
T KOG1791|consen 1668 LNLGSRQGIVSFLELLRINIKSRLPIDDILNLIGTLAGEQRKTLNSTLRLAQEVNGIWKDLLG 1730 (1758)
T ss_pred chhhhHHHHHHHHHHhcCCcceeeehhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0001111111111100 00111 233666777777788888888887775
No 288
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=41.65 E-value=49 Score=35.19 Aligned_cols=41 Identities=15% Similarity=0.282 Sum_probs=34.2
Q ss_pred CcchhHHhCCcHHHHHHhhcCC-ChHHHHHHHHHHHHHhcCC
Q 015709 298 VEPPLFRDRFFLKSVVDLTASA-DLDLQEKALAAIKNLLQLR 338 (402)
Q Consensus 298 ~~~~~l~~~g~v~~Lv~lL~~~-d~dv~E~aL~aL~~L~~~~ 338 (402)
...+.+.++++++.|+++|... +.+++..|...|+.+...+
T Consensus 53 ~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is 94 (475)
T PF04499_consen 53 GILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRIS 94 (475)
T ss_pred HHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 4566778899999999999854 8889999999988887654
No 289
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=41.46 E-value=1.8e+02 Score=27.02 Aligned_cols=58 Identities=21% Similarity=0.091 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHhcCChHhHHHHHHc--Cc--HHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 015709 188 TDIRKISAWILGKASQNNPLVQKQVLEL--GA--LSKLMKMVKSSFVEEAVKALYTVSSLIRN 246 (402)
Q Consensus 188 ~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~--g~--L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~ 246 (402)
.+=-.+.+.+++|++| .|..++.|++. +. +.+|+-...+.+..-|.-++.+|=|++=+
T Consensus 72 ~~~~~yla~vl~NlS~-~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd 133 (192)
T PF04063_consen 72 KDNYDYLASVLANLSQ-LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFD 133 (192)
T ss_pred CcchhHHHHHHHHhcC-CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhcc
Confidence 4455788999999998 58899999865 33 78888888887544466788888887754
No 290
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=41.21 E-value=2.9e+02 Score=25.46 Aligned_cols=88 Identities=20% Similarity=0.106 Sum_probs=49.9
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHH--HHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHh-cCChhcHHH
Q 015709 177 SVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQV--LELGALSKLMKMVKSSFVEEAVKALYTVSSLI-RNNLAGQEM 253 (402)
Q Consensus 177 ~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~--le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~Li-R~~~~~~~~ 253 (402)
|.|+.||...+. +.....+|+.++.. +...+ +..|+-+-|.+.+-+.+...-.||.+-..+|. .-+..-...
T Consensus 6 plLIsCL~~q~~--k~s~~KiL~~iVs~---Va~~v~~~~~~~W~eL~d~Ils~~~~e~~kA~~IF~~L~~~l~~efl~~ 80 (174)
T PF04510_consen 6 PLLISCLTMQET--KESDFKILRRIVSH---VAYEVFDLQEGGWDELSDCILSLSENEPVKAFHIFICLPMPLYGEFLIP 80 (174)
T ss_pred HHHHHHHHhhcc--cHhHHHHHHHHHHH---HHHHHHhcCCCCchhHHHHHHHhhccchHHHHHHHHhCCchhhhhHHHH
Confidence 456788865332 23334445555421 11223 35678888888777655444588888888876 333443444
Q ss_pred HHhcCcHHHHHHhhcCC
Q 015709 254 FYVEAGDLMLQDILGNS 270 (402)
Q Consensus 254 f~~~gGi~~L~~lL~s~ 270 (402)
|++. -.+.+.+.|.+|
T Consensus 81 ~~~~-L~~~~~~~L~~p 96 (174)
T PF04510_consen 81 FMEN-LLPEISKVLLPP 96 (174)
T ss_pred HHHH-HHHHHHHHcCCc
Confidence 4443 555566666655
No 291
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=39.82 E-value=2.2e+02 Score=32.64 Aligned_cols=92 Identities=14% Similarity=0.071 Sum_probs=58.3
Q ss_pred CCCchhHHHhcCCHHHHHHhc-CC---CCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCC-HHHHHHHH
Q 015709 163 PIDNANDLSKLGGLSVLVGQL-NH---PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF-VEEAVKAL 237 (402)
Q Consensus 163 ~iDnA~~l~~lGgl~~Li~lL-~s---~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~-~~vr~kAl 237 (402)
.-+.-..|.+.-|+++|+.+| +. ..+. +-+..+.+++-+...+++|+.++.... +.++.+|-
T Consensus 146 ~~~~v~~~l~hi~~stlMD~Llkli~~de~~-------------~p~~~Viq~l~d~~li~kll~ll~ps~~~~~qsna~ 212 (838)
T KOG2073|consen 146 KDNFVDLFLKHIDISTLMDFLLKLISTDEPE-------------SPRTDVIQWLNDQELIPKLLELLNPSKDPDVQSNAG 212 (838)
T ss_pred hhHHHHHHHHHcCccHHHHHHHHhccccCCC-------------CchHHHHHHHhhHHHHHHHHHHhCCccccchhHHHH
Confidence 444555677777777777755 21 1111 112457777888889999999998755 56788888
Q ss_pred HHHHHHhcC-----Chh-cHHHHHhcCcHHHHHHhh
Q 015709 238 YTVSSLIRN-----NLA-GQEMFYVEAGDLMLQDIL 267 (402)
Q Consensus 238 ~ALS~LiR~-----~~~-~~~~f~~~gGi~~L~~lL 267 (402)
+.|+.++|. -|. ...++.....+..|+..+
T Consensus 213 ~~L~~iv~~s~~~~gPn~L~~qL~s~e~ieqLl~~m 248 (838)
T KOG2073|consen 213 QTLCAIVRLSRNQPGPNPLTKQLESPETIEQLLKIM 248 (838)
T ss_pred HHHHHHHhcccccCCCCHHHHhhcCHHHHHHHHHHH
Confidence 888887776 333 344444555555555443
No 292
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.80 E-value=2.2e+02 Score=32.03 Aligned_cols=169 Identities=14% Similarity=0.178 Sum_probs=96.5
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHhc-CCh----HhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHH
Q 015709 180 VGQLNHPDTDIRKISAWILGKASQ-NNP----LVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF 254 (402)
Q Consensus 180 i~lL~s~~~~Ir~~Aa~vLg~~aq-NNp----~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f 254 (402)
..-|+.+|..||..|+.++-++-- -.| +-.+.+++. -...|.+||+++-+.+|.-|+--++-++..+=. .+
T Consensus 180 ~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~k-Qf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe---~i 255 (1005)
T KOG1949|consen 180 WRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQK-QFEELYSLLEDPYPMVRSTAILGVCKITSKFWE---MI 255 (1005)
T ss_pred HHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH---Hc
Confidence 356677899999999999877642 112 223334432 357788999998899999888887766543211 00
Q ss_pred HhcCcHHHHHHh---hcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHH
Q 015709 255 YVEAGDLMLQDI---LGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAI 331 (402)
Q Consensus 255 ~~~gGi~~L~~l---L~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL 331 (402)
=..--..+|..+ +..+ +...+|.-...-|..++. +|..-.. .+.+ +|.+-..|......+|-.+...|
T Consensus 256 P~~i~~~ll~kI~d~~a~d-t~s~VR~svf~gl~~~l~------np~sh~~-le~~-Lpal~~~l~D~se~VRvA~vd~l 326 (1005)
T KOG1949|consen 256 PPTILIDLLKKITDELAFD-TSSDVRCSVFKGLPMILD------NPLSHPL-LEQL-LPALRYSLHDNSEKVRVAFVDML 326 (1005)
T ss_pred CHHHHHHHHHHHHHHhhhc-cchheehhHhcCcHHHHc------CccchhH-HHHH-HHhcchhhhccchhHHHHHHHHH
Confidence 001112222222 2222 223466667777777764 2332222 2222 33555555555667777777776
Q ss_pred HHHhcCChhhHHHHHhcCCcHHHHHHHHHHhHH
Q 015709 332 KNLLQLRTTEALVLKDFCGLDTALERLRQQLQE 364 (402)
Q Consensus 332 ~~L~~~~~~~~~~~~~~~GL~~~L~~L~~~~~~ 364 (402)
..+-... ..+.+. -|-++.+|.+|.....+
T Consensus 327 l~ik~vr--a~~f~~-I~~~d~~l~~L~~d~~~ 356 (1005)
T KOG1949|consen 327 LKIKAVR--AAKFWK-ICPMDHILVRLETDSRP 356 (1005)
T ss_pred HHHHhhh--hhhhhc-cccHHHHHHHHhccccH
Confidence 6665432 334444 77788888887554443
No 293
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=39.66 E-value=1.2e+02 Score=27.92 Aligned_cols=121 Identities=15% Similarity=0.157 Sum_probs=49.3
Q ss_pred ChHhHHHHHHcCcHHHHHHhhcCCC------------------HHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHh
Q 015709 205 NPLVQKQVLELGALSKLMKMVKSSF------------------VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDI 266 (402)
Q Consensus 205 Np~~Q~~~le~g~L~~Ll~LL~s~~------------------~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~l 266 (402)
+..-|..+.+.|++..++.+++..- ..+-..+..-|..++++|+.++..+.++-.+- +..+
T Consensus 32 ~~~rQ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~~~~l-~~~~ 110 (207)
T PF01365_consen 32 NRERQKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKHLDFL-ISIF 110 (207)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH------H
T ss_pred chhhHHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhHH-HHHH
Confidence 3467888889999999999887421 12345677778889999999999988753311 2222
Q ss_pred hcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcC
Q 015709 267 LGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 337 (402)
Q Consensus 267 L~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~ 337 (402)
+... ...-.-+.-++..+.. .++.....+.+.. +..++++|.... -+..-+..|..+...
T Consensus 111 ~~~~---~~~~~~~~d~l~~i~~-----dN~~L~~~i~e~~-I~~~i~ll~~~g--r~~~~L~~L~~lc~~ 170 (207)
T PF01365_consen 111 MQLQ---IGYGLGALDVLTEIFR-----DNPELCESISEEH-IEKFIELLRKHG--RQPRYLDFLSSLCVC 170 (207)
T ss_dssp HCCC---H-TTHHHHHHHHHHHT-----T------------------------------------------
T ss_pred HHhh---ccCCchHHHHHHHHHH-----CcHHHHHHhhHHH-HHHHHHHHHHcC--CChHHHHHHhhhccc
Confidence 2221 1011235666677764 3566666665544 888888887632 334456566666543
No 294
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=39.62 E-value=2.6e+02 Score=33.10 Aligned_cols=113 Identities=14% Similarity=0.115 Sum_probs=72.5
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhc---HHHHHhcC--cHHHHHHhhcCCCccHHHHHHHHHHHHHHhhccc
Q 015709 218 LSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG---QEMFYVEA--GDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQL 292 (402)
Q Consensus 218 L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~---~~~f~~~g--Gi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l 292 (402)
+..|+.++.+++-..|-..+.++++++-+.-.. .....+.. -++.|..-+.+- +..+|.|+......|+...
T Consensus 314 l~~lv~lld~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~erl~Dv--sa~vRskVLqv~~~l~~~~- 390 (1251)
T KOG0414|consen 314 LTLLVDLLDSESYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLELLRERLLDV--SAYVRSKVLQVFRRLFQQH- 390 (1251)
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHcc-
Confidence 556777887777778888888888877652111 11111111 344455545543 6779999999999999642
Q ss_pred ccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCCh
Q 015709 293 ENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT 339 (402)
Q Consensus 293 ~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~ 339 (402)
...... -..++..++.-|...+.-||..|+..+..++...+
T Consensus 391 -s~p~~~-----~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~~~P 431 (1251)
T KOG0414|consen 391 -SIPLGS-----RTEVLELAIGRLEDKSSLVRKNAIQLLSSLLDRHP 431 (1251)
T ss_pred -CCCccH-----HHHHHHHHhcccccccHHHHHHHHHHHHHHHhcCC
Confidence 111111 12345555666777788899999999999887644
No 295
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=39.61 E-value=65 Score=29.77 Aligned_cols=68 Identities=16% Similarity=0.126 Sum_probs=50.6
Q ss_pred HHHHhcCC-CCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHH----HhhcCCCHHHHHHHHHHHHHHhcCCh
Q 015709 178 VLVGQLNH-PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLM----KMVKSSFVEEAVKALYTVSSLIRNNL 248 (402)
Q Consensus 178 ~Li~lL~s-~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll----~LL~s~~~~vr~kAl~ALS~LiR~~~ 248 (402)
.|+..|.+ .++.+....++|++.++||.|..+-. .|.++.++ .++.+.+.+++..++.++++++.-.+
T Consensus 105 ~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~---~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 105 GLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLP---PGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQP 177 (182)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHHccCChhhcC---HhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCC
Confidence 44555544 57888899999999999999976543 46666555 45666778899999999998876544
No 296
>PF10257 RAI16-like: Retinoic acid induced 16-like protein; InterPro: IPR019384 This entry represents a conserved sequence region found in a family of proteins described as retinoic acid-induced protein 16-like proteins. These proteins are conserved from worms to humans, but their function is not known.
Probab=39.61 E-value=3.6e+02 Score=27.40 Aligned_cols=136 Identities=15% Similarity=0.082 Sum_probs=83.9
Q ss_pred cCCHHHHHHhcC-CCCHHHHHHHHHHHHHHhcCChHhHHHHHH-cCcHHHHHHh-hcC---C--C---HHHHHHHHHHHH
Q 015709 173 LGGLSVLVGQLN-HPDTDIRKISAWILGKASQNNPLVQKQVLE-LGALSKLMKM-VKS---S--F---VEEAVKALYTVS 241 (402)
Q Consensus 173 lGgl~~Li~lL~-s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le-~g~L~~Ll~L-L~s---~--~---~~vr~kAl~ALS 241 (402)
..-+..|..+-. ...+++|..+.+.+.++... .++.++. ..+..+++++ +.. . . +..-+.-++.|+
T Consensus 8 ~~Il~~L~~la~~d~p~g~r~~~l~f~~~Ll~~---~~~plL~h~~v~~pl~~L~l~~c~~~~~~~~~E~~lV~lL~~lc 84 (353)
T PF10257_consen 8 HQILETLCTLAKADYPPGMRQEVLKFFSRLLSQ---SQQPLLPHRSVHRPLQRLLLRSCGESRSASPTEKELVELLNTLC 84 (353)
T ss_pred hChHHHHHHHHcccCChHHHHHHHHHHHHHHHh---cccccccchhhhhhHHHHHHHHhCCCCCCchHHHHHHHHHHHHH
Confidence 345667776653 46799999999999999875 2333443 3556677777 442 1 1 122457899999
Q ss_pred HHhcCChhcHHHHHhcCc--------------------------HHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccC
Q 015709 242 SLIRNNLAGQEMFYVEAG--------------------------DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM 295 (402)
Q Consensus 242 ~LiR~~~~~~~~f~~~gG--------------------------i~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~ 295 (402)
.-+|.+|.-...|...+. +..|+..+.+.+ ++-.+|...+-.++.-. ..
T Consensus 85 ~~i~~~P~ll~~ff~~~~~~~~~~~~~~~~~~~~~~~~~~~f~Lf~~Ll~~vh~eg---~ig~~Are~LLll~~l~--~~ 159 (353)
T PF10257_consen 85 SKIRKDPSLLNFFFESSPSQAQEEDSESSSSSFAGRTGKSEFLLFSLLLPYVHSEG---RIGDFAREGLLLLMSLA--SE 159 (353)
T ss_pred HHHHhCHHHHHHHhcCCccccccccccCcccccCCCCCCccchHHHHHHHHhCcCc---HHHHHHHHHHHHHHhCC--CC
Confidence 999999998888876543 356666666652 34445555555544321 22
Q ss_pred CCCcchhHHh-CCcHHHHHHhh
Q 015709 296 HKVEPPLFRD-RFFLKSVVDLT 316 (402)
Q Consensus 296 ~~~~~~~l~~-~g~v~~Lv~lL 316 (402)
++.....+.+ ..+++.+..-|
T Consensus 160 ~~~~~~~i~~~S~fc~~latgL 181 (353)
T PF10257_consen 160 DPALAQYIVEHSDFCPVLATGL 181 (353)
T ss_pred CcHHHHHHHHcchhHHHHHHHH
Confidence 4445555665 55555554433
No 297
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=39.53 E-value=2e+02 Score=32.16 Aligned_cols=160 Identities=14% Similarity=0.106 Sum_probs=90.9
Q ss_pred CCCCchhHHHhcCCHHHHHHhcCC-CCHHHHHHHHHHHHHHhcCC--hHhHHHHHHcCcHHHHHHhhcCCCH-HHHHHHH
Q 015709 162 EPIDNANDLSKLGGLSVLVGQLNH-PDTDIRKISAWILGKASQNN--PLVQKQVLELGALSKLMKMVKSSFV-EEAVKAL 237 (402)
Q Consensus 162 e~iDnA~~l~~lGgl~~Li~lL~s-~~~~Ir~~Aa~vLg~~aqNN--p~~Q~~~le~g~L~~Ll~LL~s~~~-~vr~kAl 237 (402)
+..++...|.+.||...+..+++. .+.+++..+..++++++.-- ...+..+..... ..+-.++...+. +....|.
T Consensus 501 ~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~-~~f~~~~~~w~~~ersY~~~ 579 (699)
T KOG3665|consen 501 ENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDF-SVFKVLLNKWDSIERSYNAA 579 (699)
T ss_pred CCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH-HHHHHHHhhcchhhHHHHHH
Confidence 567899999999999999999965 78899999999999998532 112221111110 011112222111 2223333
Q ss_pred HHHHHHhcC-----------------------ChhcHHHHHhcCcHHH-HHHhhcCCCccHHHHHHHHHHHHHHhhcccc
Q 015709 238 YTVSSLIRN-----------------------NLAGQEMFYVEAGDLM-LQDILGNSSFEIRLHRKAVSLVGDLAKCQLE 293 (402)
Q Consensus 238 ~ALS~LiR~-----------------------~~~~~~~f~~~gGi~~-L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~ 293 (402)
.-|+.++-+ .+.....+....-+.+ +..++.... .+..+.=|+|.+.+++.+
T Consensus 580 siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~-~~g~~lWal~ti~~~~~~--- 655 (699)
T KOG3665|consen 580 SILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSK-SDGSQLWALWTIKNVLEQ--- 655 (699)
T ss_pred HHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccC-CCchHHHHHHHHHHHHHc---
Confidence 333333332 2222222222233333 555555432 345688899999999864
Q ss_pred cCCCCcchhHHhCCcHHHHHHhhcCC-ChHHHHHHH
Q 015709 294 NMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKAL 328 (402)
Q Consensus 294 ~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~dv~E~aL 328 (402)
+++....+.+.|+++.+.+.-... ..++++.+.
T Consensus 656 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (699)
T KOG3665|consen 656 --NKEYCKLVRESNGFELIENIRVLSEVVDVKEEAV 689 (699)
T ss_pred --ChhhhhhhHhccchhhhhhcchhHHHHHHHHHHH
Confidence 566777777888887777653322 344444444
No 298
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=39.47 E-value=4.3e+02 Score=29.46 Aligned_cols=67 Identities=15% Similarity=0.154 Sum_probs=56.1
Q ss_pred CHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCChhcHHH
Q 015709 187 DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEM 253 (402)
Q Consensus 187 ~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~-~~vr~kAl~ALS~LiR~~~~~~~~ 253 (402)
.+.-|..|..+||.+++..|.---.|.+...++.|+++|..+. ..+...|+.+|.-++=+.|.....
T Consensus 81 ~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~ 148 (668)
T PF04388_consen 81 KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGP 148 (668)
T ss_pred CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhH
Confidence 4578899999999999999988888999999999999999776 456788999999888776654433
No 299
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=39.36 E-value=6.7e+02 Score=29.09 Aligned_cols=198 Identities=13% Similarity=0.064 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcC-
Q 015709 149 DSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS- 227 (402)
Q Consensus 149 ~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s- 227 (402)
-|..|+..+..++. ..--..+. =+-+..|+++....+.++-..-..+|+.++.-+|+... -++.-..|..+.++..
T Consensus 507 ~ki~a~~~~~~~~~-~~vl~~~~-p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~a-s~~skI~P~~i~lF~k~ 583 (1005)
T KOG2274|consen 507 VKISAVRAFCGYCK-VKVLLSLQ-PMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAA-SMESKICPLTINLFLKY 583 (1005)
T ss_pred hhHHHHHHHHhccC-ceeccccc-hHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhh-hhhcchhHHHHHHHHHh
Confidence 45666666665551 00000000 02234555666667788888889999999998886543 4456677777766553
Q ss_pred -CCHHH---HHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCC--ccHHHHHHHHHHHHHHhhcccccCCCCcch
Q 015709 228 -SFVEE---AVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSS--FEIRLHRKAVSLVGDLAKCQLENMHKVEPP 301 (402)
Q Consensus 228 -~~~~v---r~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~--~d~klq~kA~~lL~~L~~~~l~~~~~~~~~ 301 (402)
+++-+ ....+-.|+-...+..+-+..+ ++-|++.|+.+. ....+..-|+-.|..+.+. ..+....
T Consensus 584 s~DP~V~~~~qd~f~el~q~~~~~g~m~e~~-----iPslisil~~~~~~~~~~l~~~aidvLttvvr~----tp~pL~~ 654 (1005)
T KOG2274|consen 584 SEDPQVASLAQDLFEELLQIAANYGPMQERL-----IPSLISVLQLNADKAPAGLCAIAIDVLTTVLRN----TPSPLPN 654 (1005)
T ss_pred cCCchHHHHHHHHHHHHHHHHHhhcchHHHH-----HHHHHHHHcCcccccCchhhHHHHHHHHHHHhc----CCCCccH
Confidence 23333 2344555665444444544444 688888888652 2345666777777777764 3455555
Q ss_pred hHHhCCcHHHHHH-hhcCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCcH--HHHHHHH
Q 015709 302 LFRDRFFLKSVVD-LTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLD--TALERLR 359 (402)
Q Consensus 302 ~l~~~g~v~~Lv~-lL~~~d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~--~~L~~L~ 359 (402)
.+...- .+.+.+ .|.++|+.....+-.||..+...+.+.-..+....|.- ..+.-+.
T Consensus 655 ~l~~~~-FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~s 714 (1005)
T KOG2274|consen 655 LLICYA-FPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLS 714 (1005)
T ss_pred HHHHHH-hHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHH
Confidence 555543 444444 46788999999999999999988655445566566654 4444443
No 300
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.01 E-value=1.9e+02 Score=33.09 Aligned_cols=71 Identities=13% Similarity=0.052 Sum_probs=55.3
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh
Q 015709 178 VLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA 249 (402)
Q Consensus 178 ~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~ 249 (402)
.-+..+.++.+.+|.+|..-+.....+-.++ ..+...+++...+.+++++++-+--.|+..+.+++.-+|.
T Consensus 731 eai~sl~d~qvpik~~gL~~l~~l~e~r~~~-~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e 801 (982)
T KOG4653|consen 731 EAISSLHDDQVPIKGYGLQMLRHLIEKRKKA-TLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE 801 (982)
T ss_pred HHHHHhcCCcccchHHHHHHHHHHHHhcchh-hhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch
Confidence 3455667788899999999999999876444 4456678999999999998887777777777777765554
No 301
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=38.75 E-value=6e+02 Score=28.41 Aligned_cols=193 Identities=15% Similarity=0.145 Sum_probs=100.4
Q ss_pred HHHHHHHHHHccCCCC--chhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHH---HcCcHHHHHHh
Q 015709 150 SQRALQELLILVEPID--NANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVL---ELGALSKLMKM 224 (402)
Q Consensus 150 k~~AL~~L~~Lve~iD--nA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~l---e~g~L~~Ll~L 224 (402)
-...++++..++.+-+ ...++..+ ..+..+-.-+++++..|.-+|.-++.+.+..-..+. ..+.+..++..
T Consensus 522 ~~~~~eeil~li~~s~~~~~e~~~~l----~~l~~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~ 597 (745)
T KOG0301|consen 522 EINGLEEILSLIKNSSHYSSEVLQSL----LALAILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPI 597 (745)
T ss_pred hhhhHHHHHHhhcCCCCccchhHHHH----HHHHHHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcc
Confidence 3344555655555433 22233333 233344445788999999999999987664433332 12355566666
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhh---cCCCccHHHHHHHHHHHHHHhhcccccCCCCcch
Q 015709 225 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDIL---GNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPP 301 (402)
Q Consensus 225 L~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL---~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~ 301 (402)
++ .++..+.-++..|+|+..| +.+++.|... ...+...+ ++. .+-.+++-.+.+.-|+..... .+.+
T Consensus 598 ~~-~~~an~ll~vR~L~N~f~~-~~g~~~~~s~--~~~i~~~~~~~~s~-~~knl~ia~atlaln~sv~l~--~~~~--- 667 (745)
T KOG0301|consen 598 LN-ADPANQLLVVRCLANLFSN-PAGRELFMSR--LESILDPVIEASSL-SNKNLQIALATLALNYSVLLI--QDNE--- 667 (745)
T ss_pred cc-cchhHHHHHHHHHHHhccC-HHHHHHHHHH--HHHHhhhhhhhhcc-cchhHHHHHHHHHHHHHHHHH--hccc---
Confidence 65 3455677888999999876 7778877654 22222222 121 122244433333333322110 1111
Q ss_pred hHHhCCcHHHHHHhhc---CC--ChHHHHHHHHHHHHHhcCChhhHHHHHhcCCcHHHHHHHHH
Q 015709 302 LFRDRFFLKSVVDLTA---SA--DLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQ 360 (402)
Q Consensus 302 ~l~~~g~v~~Lv~lL~---~~--d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~~~L~~L~~ 360 (402)
+.+.++.+...+. .+ |.+..=..+.||.+|+..+... ..+.+..+.+....++++
T Consensus 668 ---~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~-~~~A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 668 ---QLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASV-IQLAKNRSVDSIAKKLKE 727 (745)
T ss_pred ---ccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHH-HHHHHhcCHHHHHHHHHH
Confidence 1344444433332 22 3333335677777887765433 334445666666666543
No 302
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=37.92 E-value=44 Score=28.35 Aligned_cols=39 Identities=13% Similarity=0.042 Sum_probs=31.0
Q ss_pred HHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccH
Q 015709 235 KALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEI 274 (402)
Q Consensus 235 kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~ 274 (402)
..+-.++.+. .+|.-...|++.|+++.|+.+|.+++.|+
T Consensus 65 ~~Ik~l~~La-~~P~LYp~lv~l~~v~sL~~LL~HeN~DI 103 (108)
T PF08216_consen 65 EEIKKLSVLA-TAPELYPELVELGAVPSLLGLLSHENTDI 103 (108)
T ss_pred HHHHHHHHcc-CChhHHHHHHHcCCHHHHHHHHCCCCcce
Confidence 4555666554 46888999999999999999999887664
No 303
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=37.74 E-value=2.1e+02 Score=25.63 Aligned_cols=128 Identities=16% Similarity=0.132 Sum_probs=84.2
Q ss_pred hcCChHhHHHHHHcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhcC--ChhcHHHHHhcCcHHHHHHhhcCCCccHHHHH
Q 015709 202 SQNNPLVQKQVLELGALSKLMKMVKSS-FVEEAVKALYTVSSLIRN--NLAGQEMFYVEAGDLMLQDILGNSSFEIRLHR 278 (402)
Q Consensus 202 aqNNp~~Q~~~le~g~L~~Ll~LL~s~-~~~vr~kAl~ALS~LiR~--~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~ 278 (402)
=||+|..=+.++|.+.+..++++++.. +..++...+-.+|=++.+ ++.+.--+...+-+.-++..--+-+ +..+..
T Consensus 12 Dq~~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~-~ee~l~ 90 (149)
T PF09758_consen 12 DQNDPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFS-DEEVLS 90 (149)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCC-cchhHH
Confidence 378899999999999999999999983 467899999999999887 4444555556777766666533322 334666
Q ss_pred HHHHHHHHHhhcccccCCCCcchhHHh--CCcHH---HHHHhhcCCChHHHHHHHHHHHHH
Q 015709 279 KAVSLVGDLAKCQLENMHKVEPPLFRD--RFFLK---SVVDLTASADLDLQEKALAAIKNL 334 (402)
Q Consensus 279 kA~~lL~~L~~~~l~~~~~~~~~~l~~--~g~v~---~Lv~lL~~~d~dv~E~aL~aL~~L 334 (402)
--+.+|..|+.. .++.....+.. .+-.| .-+.+.+++|.=+|-.+-..+.++
T Consensus 91 yYIsfLK~lSlk----ln~~tv~fffn~~~~~FPL~~~aikf~~h~d~Mvr~avR~i~Lni 147 (149)
T PF09758_consen 91 YYISFLKTLSLK----LNKDTVQFFFNERNDSFPLYTEAIKFYNHPDSMVRTAVRTITLNI 147 (149)
T ss_pred HHHHHHHHHHhh----cCCCceeEeEecCCCCCCcHHHHHHhhcCcchHHHHHHHHHHHhh
Confidence 677777777642 24444444432 22333 335566777766666555444443
No 304
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=37.44 E-value=1.1e+02 Score=30.68 Aligned_cols=51 Identities=20% Similarity=0.284 Sum_probs=39.9
Q ss_pred CCCcchhHHhCC--cHHHHHHhhcCC---ChHHHHHHHHHHHHHhcCChhhHHHHH
Q 015709 296 HKVEPPLFRDRF--FLKSVVDLTASA---DLDLQEKALAAIKNLLQLRTTEALVLK 346 (402)
Q Consensus 296 ~~~~~~~l~~~g--~v~~Lv~lL~~~---d~dv~E~aL~aL~~L~~~~~~~~~~~~ 346 (402)
++.....+...+ ++..|++++..+ ..++|..|+.+|.+++.....+.++++
T Consensus 252 ~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~ 307 (329)
T PF06012_consen 252 ESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLR 307 (329)
T ss_pred CHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 344555666665 999999999876 568999999999999998766666665
No 305
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=37.43 E-value=2.3e+02 Score=23.87 Aligned_cols=71 Identities=13% Similarity=0.204 Sum_probs=49.7
Q ss_pred HHHHHHHHhhcCC--CCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCC--CCHHHHHHHHHHHHHHhcCCh
Q 015709 132 LIQIAIDDLNNST--LSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH--PDTDIRKISAWILGKASQNNP 206 (402)
Q Consensus 132 lMk~al~~L~~~~--~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s--~~~~Ir~~Aa~vLg~~aqNNp 206 (402)
+|...-+++++.. .+..+|..++..+.+++.-. .. +-..+.|.+..+|.+ ..+++|..|..|-....+.=+
T Consensus 12 il~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~---g~-~i~~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~L~ 86 (107)
T smart00802 12 ILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLM---GK-HISSALPQIMACLQSALEIPELRSLALRCWHVLIKTLK 86 (107)
T ss_pred HHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhCC
Confidence 3444456666655 57789999999999988832 21 112357777778865 678899999998888887533
No 306
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=36.82 E-value=2.2e+02 Score=23.99 Aligned_cols=78 Identities=13% Similarity=0.139 Sum_probs=44.3
Q ss_pred cHHHHHHhhcCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCcHHHHHHHHHHhHHh----hhhhhHhhhHHHHHHHHH
Q 015709 308 FLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEV----MLEEDQRDYAMDVEALRR 383 (402)
Q Consensus 308 ~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~~~L~~L~~~~~~l----~~~e~~~~y~~~l~~~~~ 383 (402)
+++.|+.-|..++.++..+|+..|...+... .+-..+. .+.|.|..|...-..+ .+-...-.|..+...+.+
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~-~~le~~v---~~~p~l~~L~~~g~~Ll~~~lS~~~Gf~~L~~~~~v~~ 84 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK-EYLEYLV---SLRPSLDHLGDIGSPLLLRFLSTPSGFRYLNEIGYVEK 84 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch-hhHHHHH---HcCcHHHHHHHcCHHHHHHHHcchHHHHHhcchhHHHH
Confidence 4677888888888899999999998887765 3333332 2334444333322221 122223345555555666
Q ss_pred HHHHHH
Q 015709 384 EVELIF 389 (402)
Q Consensus 384 e~~~~~ 389 (402)
|++.=+
T Consensus 85 El~~W~ 90 (115)
T PF14663_consen 85 ELDKWF 90 (115)
T ss_pred HHHHHH
Confidence 655444
No 307
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=36.78 E-value=1.9e+02 Score=30.82 Aligned_cols=161 Identities=15% Similarity=0.085 Sum_probs=92.6
Q ss_pred HHHHcCC-CCHHHHHHHHHHHhh--c--C-----CCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCC--C
Q 015709 120 LMEKLKT-PSDAQLIQIAIDDLN--N--S-----TLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHP--D 187 (402)
Q Consensus 120 a~~~l~~-~~d~~lMk~al~~L~--~--~-----~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~--~ 187 (402)
.++.+.. -+|..++..++..+. . . -.++.-|...|.-|. ...--++.+ -..+..+...|.++ +
T Consensus 260 ~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~---kS~~Aa~~~--~~~~~i~~~~l~~~~~~ 334 (501)
T PF13001_consen 260 LLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLS---KSVIAATSF--PNILQIVFDGLYSDNTN 334 (501)
T ss_pred HHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHH---HhHHHHhCC--ccHHHHHhccccCCccc
Confidence 3444433 357888888888877 2 1 123444555544443 332222222 12344444566666 7
Q ss_pred HHHHHHHHHHH---HHHhcCChHhHHHHHHcCcHHHHHHhhc--------CCCHHHHHHHHHHHHHHhcCChhcHHHHHh
Q 015709 188 TDIRKISAWIL---GKASQNNPLVQKQVLELGALSKLMKMVK--------SSFVEEAVKALYTVSSLIRNNLAGQEMFYV 256 (402)
Q Consensus 188 ~~Ir~~Aa~vL---g~~aqNNp~~Q~~~le~g~L~~Ll~LL~--------s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~ 256 (402)
..+|..+..-+ .....+-+..+-.-+....+..++.++. +++...|..+--+|+.+.+..|.... -+
T Consensus 335 ~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~--~d 412 (501)
T PF13001_consen 335 SKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFS--KD 412 (501)
T ss_pred cccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCccccc--cc
Confidence 78888887777 6666654443333333223333333332 22356799999999999999886321 13
Q ss_pred cCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015709 257 EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (402)
Q Consensus 257 ~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~ 289 (402)
.+-+..|..-|.++ +..++...-.+|+.|+.
T Consensus 413 ~~li~~LF~sL~~~--~~evr~sIqeALssl~~ 443 (501)
T PF13001_consen 413 LSLIEFLFDSLEDE--SPEVRVSIQEALSSLAP 443 (501)
T ss_pred HHHHHHHHHHhhCc--chHHHHHHHHHHHHHHH
Confidence 45555666666544 45577788888888875
No 308
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=36.29 E-value=91 Score=28.54 Aligned_cols=76 Identities=25% Similarity=0.296 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhc
Q 015709 147 LEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK 226 (402)
Q Consensus 147 ~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~ 226 (402)
.|.|..|++.+.-+++.....-++... +..++.-|.. +.+||..+..+|..+++.+|..-..-++ ..+++|-..++
T Consensus 41 LelRK~ayE~lytlLd~~~~~~~~~~~--~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld-~l~~~l~~~L~ 116 (169)
T PF08623_consen 41 LELRKAAYECLYTLLDTCLSRIDISEF--LDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLD-SLVEPLRKTLS 116 (169)
T ss_dssp GHHHHHHHHHHHHHHHSTCSSS-HHHH--HHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCT-TTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHH--HHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHhh
Confidence 577888888888887754444455555 6777777776 9999999999999999999865443332 45666666664
No 309
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=35.59 E-value=7.2e+02 Score=28.41 Aligned_cols=66 Identities=23% Similarity=0.269 Sum_probs=48.4
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015709 217 ALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (402)
Q Consensus 217 ~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~ 289 (402)
.|..|..+-...-..++.+++..|-.|+.+.|..... -+..|+.-|.++ +.|+-.+|..+|..|..
T Consensus 305 fievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~~-----LL~~lVNKlGDp--qnKiaskAsylL~~L~~ 370 (988)
T KOG2038|consen 305 FIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQENN-----LLVLLVNKLGDP--QNKIASKASYLLEGLLA 370 (988)
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHHH-----HHHHHHHhcCCc--chhhhhhHHHHHHHHHh
Confidence 3444444444333678999999999999988764443 456677778886 67889999999999874
No 310
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.14 E-value=1.7e+02 Score=36.20 Aligned_cols=111 Identities=11% Similarity=0.033 Sum_probs=76.0
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCChhcHHH
Q 015709 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEM 253 (402)
Q Consensus 175 gl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~-~~vr~kAl~ALS~LiR~~~~~~~~ 253 (402)
.+..+++.|..++|.+|..++..++.++|--+ +...-.......++-+.+.. +-.|.--..|++++-|+.......
T Consensus 877 ~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~---~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~ 953 (2067)
T KOG1822|consen 877 ALTLIVNSLINPNPKLRCAAAEALARLAQVVG---SAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSG 953 (2067)
T ss_pred HHHHHhhhhccCChHHHHHHHHHHHHHHHhcc---ccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCc
Confidence 45566778888999999999999999998533 11111234455665566544 445888899999998875432222
Q ss_pred HHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015709 254 FYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (402)
Q Consensus 254 f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~ 289 (402)
=....++.+|..+.+++ .++.+|.-++.++..++.
T Consensus 954 qhl~t~v~illal~~Ds-~~p~VqtwSL~al~~i~~ 988 (2067)
T KOG1822|consen 954 QHLNTSVSILLALATDS-TSPVVQTWSLHALALILD 988 (2067)
T ss_pred hhcccHHHHHHHHhhcC-CCchhhhhHHHHHHHHHc
Confidence 22346788888887766 466789888888887764
No 311
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=34.85 E-value=1.9e+02 Score=28.27 Aligned_cols=84 Identities=17% Similarity=0.145 Sum_probs=58.0
Q ss_pred HHHHHHHHHHcC---CCC-HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHH
Q 015709 114 QMEIKELMEKLK---TPS-DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTD 189 (402)
Q Consensus 114 ~~~L~ea~~~l~---~~~-d~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~ 189 (402)
.+|++.+...+. .|+ +.+..--.++.|.|. ...-|...++.|..++..+|..+. +....+.||+++|..+..
T Consensus 167 ~dfl~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~--~~w~~~~~L~iL~~ll~~~d~~~~-~~~dlispllrlL~t~~~- 242 (262)
T PF14225_consen 167 DDFLSQVVSYLREAFFPDHEFQILTFLLGLLENG--PPWLRRKTLQILKVLLPHVDMRSP-HGADLISPLLRLLQTDLW- 242 (262)
T ss_pred HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHhccccCCCC-cchHHHHHHHHHhCCccH-
Confidence 456666655542 244 456666677777775 346788889999999999988776 555578999999977643
Q ss_pred HHHHHHHHHHHHhc
Q 015709 190 IRKISAWILGKASQ 203 (402)
Q Consensus 190 Ir~~Aa~vLg~~aq 203 (402)
..|..|+-.+.+
T Consensus 243 --~eAL~VLd~~v~ 254 (262)
T PF14225_consen 243 --MEALEVLDEIVT 254 (262)
T ss_pred --HHHHHHHHHHHh
Confidence 456666665554
No 312
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=34.56 E-value=2e+02 Score=27.95 Aligned_cols=71 Identities=15% Similarity=0.190 Sum_probs=49.0
Q ss_pred cCCHHHHHHhcCCCCHH--------HHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCH--HHHHHHHHHHHH
Q 015709 173 LGGLSVLVGQLNHPDTD--------IRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFV--EEAVKALYTVSS 242 (402)
Q Consensus 173 lGgl~~Li~lL~s~~~~--------Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~--~vr~kAl~ALS~ 242 (402)
--.+++|+++++.++.- +=..-..+++++++ |-++.|-+++.++.. =+|..|+.||..
T Consensus 72 ~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~~------------G~~~~L~~li~~~~~~~yvR~aa~~aL~~ 139 (249)
T PF06685_consen 72 ERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVGD------------GDIEPLKELIEDPDADEYVRMAAISALAF 139 (249)
T ss_pred hhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHhC------------CCHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 45789999999765532 22222334444443 556778888887764 368999999999
Q ss_pred HhcCChhcHHHHH
Q 015709 243 LIRNNLAGQEMFY 255 (402)
Q Consensus 243 LiR~~~~~~~~f~ 255 (402)
++..++.-++.++
T Consensus 140 l~~~~~~~Re~vi 152 (249)
T PF06685_consen 140 LVHEGPISREEVI 152 (249)
T ss_pred HHHcCCCCHHHHH
Confidence 9999888777665
No 313
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=34.01 E-value=90 Score=24.99 Aligned_cols=55 Identities=24% Similarity=0.322 Sum_probs=41.4
Q ss_pred HhCCcHHHHHHhhc-CCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCcHHHHHHHHHHhH
Q 015709 304 RDRFFLKSVVDLTA-SADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQ 363 (402)
Q Consensus 304 ~~~g~v~~Lv~lL~-~~d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~~~L~~L~~~~~ 363 (402)
.+..+++.+..++. +.+.++|+..+.++.+++.. +...++ .|....+.-|+.-..
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~---~~~~i~--SGW~~if~il~~aa~ 69 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQS---RGENIK--SGWKVIFSILRAAAK 69 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHH---hHHHHH--hccHHHHHHHHHHHh
Confidence 34567777888754 45899999999999999975 445664 788888888755444
No 314
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=33.20 E-value=54 Score=20.38 Aligned_cols=28 Identities=25% Similarity=0.417 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcC
Q 015709 189 DIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS 227 (402)
Q Consensus 189 ~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s 227 (402)
.+|..|++.||++. +|. +++.|++.+++
T Consensus 2 ~vR~~aa~aLg~~~--~~~---------a~~~L~~~l~d 29 (30)
T smart00567 2 LVRHEAAFALGQLG--DEE---------AVPALIKALED 29 (30)
T ss_pred HHHHHHHHHHHHcC--CHh---------HHHHHHHHhcC
Confidence 58999999999984 342 45667666654
No 315
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.51 E-value=6.3e+02 Score=31.01 Aligned_cols=119 Identities=15% Similarity=0.071 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHccCCCCchhHHHhc-CCHHHHHHhcCCCCHHHHHHH---HHHHHHHhc-----CChHhHHHHHHcCcH
Q 015709 148 EDSQRALQELLILVEPIDNANDLSKL-GGLSVLVGQLNHPDTDIRKIS---AWILGKASQ-----NNPLVQKQVLELGAL 218 (402)
Q Consensus 148 e~k~~AL~~L~~Lve~iDnA~~l~~l-Ggl~~Li~lL~s~~~~Ir~~A---a~vLg~~aq-----NNp~~Q~~~le~g~L 218 (402)
-.|+.++-+|.+|+...|+-....++ .-|..+.+....-.+.+|..| +.+|+.++- .|+..-+.++. ..+
T Consensus 1054 RVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~-~iL 1132 (1702)
T KOG0915|consen 1054 RVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALD-IIL 1132 (1702)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHH-HHH
Confidence 35788899999999877655443333 356666666666567777654 555555542 24444444443 367
Q ss_pred HHHHH--hhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcC
Q 015709 219 SKLMK--MVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGN 269 (402)
Q Consensus 219 ~~Ll~--LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s 269 (402)
|.|+. ++ |+-+++|.-++..+.-|+.+.+.....+. ..-++.|..+...
T Consensus 1133 PfLl~~gim-s~v~evr~~si~tl~dl~Kssg~~lkP~~-~~LIp~ll~~~s~ 1183 (1702)
T KOG0915|consen 1133 PFLLDEGIM-SKVNEVRRFSIGTLMDLAKSSGKELKPHF-PKLIPLLLNAYSE 1183 (1702)
T ss_pred HHHhccCcc-cchHHHHHHHHHHHHHHHHhchhhhcchh-hHHHHHHHHHccc
Confidence 88774 44 54578999999999999998776444432 3455666666554
No 316
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=31.81 E-value=1.9e+02 Score=30.13 Aligned_cols=91 Identities=15% Similarity=0.112 Sum_probs=67.7
Q ss_pred HHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHH
Q 015709 235 KALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVD 314 (402)
Q Consensus 235 kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~ 314 (402)
..+..++-.+...+.+-+ .++..|..-|... ++-+...|+.++-.+.. +....++..+.+..|...|..
T Consensus 27 ~~IlDvCD~v~~~~~~~k-----d~lk~i~KRln~~--dphV~L~AlTLlda~~~----NCg~~~r~EVsSr~F~~el~a 95 (462)
T KOG2199|consen 27 SLILDVCDKVGSDPDGGK-----DCLKAIMKRLNHK--DPHVVLQALTLLDACVA----NCGKRFRLEVSSRDFTTELRA 95 (462)
T ss_pred HHHHHHHHhhcCCCcccH-----HHHHHHHHHhcCC--CcchHHHHHHHHHHHHH----hcchHHHHHHhhhhHHHHHHH
Confidence 456667777766654322 3556666666664 66688999999998875 456778888889999999999
Q ss_pred hhc-CCChHHHHHHHHHHHHHhc
Q 015709 315 LTA-SADLDLQEKALAAIKNLLQ 336 (402)
Q Consensus 315 lL~-~~d~dv~E~aL~aL~~L~~ 336 (402)
++. +.++.|.++.-..+...+.
T Consensus 96 l~~~~~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 96 LIESKAHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred HHhhcccHHHHHHHHHHHHHHHH
Confidence 998 5688999988877777664
No 317
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=31.17 E-value=23 Score=22.00 Aligned_cols=26 Identities=27% Similarity=0.580 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhc
Q 015709 190 IRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK 226 (402)
Q Consensus 190 Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~ 226 (402)
||..|++.||.+.. | -++|.|++.|+
T Consensus 1 VR~~Aa~aLg~igd--~---------~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGD--P---------RAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-S--H---------HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC--H---------HHHHHHHHHhc
Confidence 68899999999863 3 24677776653
No 318
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=31.10 E-value=4.4e+02 Score=32.95 Aligned_cols=129 Identities=12% Similarity=0.105 Sum_probs=80.3
Q ss_pred HHHHHHHHHHccC-CCCchhHHHhcCCHHHHHHhc----CCCCHHHHHHHHHHHHHHhcC--------ChHhHHHHHHcC
Q 015709 150 SQRALQELLILVE-PIDNANDLSKLGGLSVLVGQL----NHPDTDIRKISAWILGKASQN--------NPLVQKQVLELG 216 (402)
Q Consensus 150 k~~AL~~L~~Lve-~iDnA~~l~~lGgl~~Li~lL----~s~~~~Ir~~Aa~vLg~~aqN--------Np~~Q~~~le~g 216 (402)
+.-.|+.|-++.. +++.-+ ++=...|..+-.++ .+++..|+..|...|..++.. |-..|+.|+
T Consensus 1109 r~FsLqKLveIa~~Nm~Rir-l~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefL--- 1184 (1780)
T PLN03076 1109 RVFSLTKIVEIAHYNMNRIR-LVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFM--- 1184 (1780)
T ss_pred chhHHHHHHHHHHhcccchh-eehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHH---
Confidence 5556666665443 333222 22234555555533 345788999999988888763 334555554
Q ss_pred cHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCC--CccHHHHHHHHHHHHHHhh
Q 015709 217 ALSKLMKMVK-SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS--SFEIRLHRKAVSLVGDLAK 289 (402)
Q Consensus 217 ~L~~Ll~LL~-s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~--~~d~klq~kA~~lL~~L~~ 289 (402)
.++..++. +.+.++|...+-++..|+..+..+.+ .||..+..++... ..+..+...|-..+..++.
T Consensus 1185 --kPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIk-----SGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~ 1253 (1780)
T PLN03076 1185 --KPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVK-----SGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIR 1253 (1780)
T ss_pred --HHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhh-----cCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 55555554 44578999999999999876543222 3999999998732 2245566667666666653
No 319
>PLN03205 ATR interacting protein; Provisional
Probab=31.00 E-value=4.6e+02 Score=27.67 Aligned_cols=163 Identities=12% Similarity=0.125 Sum_probs=95.7
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcC---ChHhHHHHHHcCc---HHHHHHhhcCCC-HHHHHHHHHHHHHHhcC-
Q 015709 175 GLSVLVGQLNHPDTDIRKISAWILGKASQN---NPLVQKQVLELGA---LSKLMKMVKSSF-VEEAVKALYTVSSLIRN- 246 (402)
Q Consensus 175 gl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqN---Np~~Q~~~le~g~---L~~Ll~LL~s~~-~~vr~kAl~ALS~LiR~- 246 (402)
.+++|+++..-.+..+...+.++|-.+-|. |.+--++-.+.+. ++.+.++..... ..+|..|+.-.--+++.
T Consensus 324 LlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIlmss 403 (652)
T PLN03205 324 LVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNIIVMST 403 (652)
T ss_pred HHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHhhhcc
Confidence 366778887888888888998888777663 3332222222333 334444433333 34566665544444433
Q ss_pred Ch-hcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcc--c--------c-----cCCCCcchhHHhC---C
Q 015709 247 NL-AGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ--L--------E-----NMHKVEPPLFRDR---F 307 (402)
Q Consensus 247 ~~-~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~--l--------~-----~~~~~~~~~l~~~---g 307 (402)
++ ..++.|...-.++-+.++|+... -..+|..|+.++.-|.... + + ..+.......... .
T Consensus 404 na~~eREkFG~~~VfESiaQLLkkEa-Gl~VqKealhLLfLLLNCpklL~iFcSg~~e~~~ad~eNd~~~n~st~k~fSs 482 (652)
T PLN03205 404 DAYTARESFVSKEVFESISLLLRKEG-GLHVRKEAIHLFYLLLNCPKLYDRFDSLHEEKNSSDTENDSEGNFFALEAFGK 482 (652)
T ss_pred chhHHHHHhcchHHHHHHHHHHHHhc-cchhhHHHHHHHHHHHcCcHHHHHHhcCCccccccccccccccccccHHHHHH
Confidence 32 34666766778888899998763 4678999998887665331 0 0 0111110111111 2
Q ss_pred cHHHHHHhhcCC-----ChHHHHHHHHHHHHHhcCC
Q 015709 308 FLKSVVDLTASA-----DLDLQEKALAAIKNLLQLR 338 (402)
Q Consensus 308 ~v~~Lv~lL~~~-----d~dv~E~aL~aL~~L~~~~ 338 (402)
++..|.+++..+ |..++..+...|.-+++.+
T Consensus 483 IlegLAeCiac~~~s~~dIeLck~aiimLAflASSG 518 (652)
T PLN03205 483 IFEGLADCLTSPRKTSEDLELCRNVIMILALAASSG 518 (652)
T ss_pred HHHHHHHHHcCCCCChhhhHHHHHHHHHHHHHHhcC
Confidence 344566666543 7888899988888888765
No 320
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=30.17 E-value=2.3e+02 Score=22.92 Aligned_cols=52 Identities=19% Similarity=0.264 Sum_probs=37.3
Q ss_pred CHHHHHHHHHHHHHHhcC----ChHhHHHHHHcCcHHHHHHhhcCCC--HHHHHHHHHHHHHH
Q 015709 187 DTDIRKISAWILGKASQN----NPLVQKQVLELGALSKLMKMVKSSF--VEEAVKALYTVSSL 243 (402)
Q Consensus 187 ~~~Ir~~Aa~vLg~~aqN----Np~~Q~~~le~g~L~~Ll~LL~s~~--~~vr~kAl~ALS~L 243 (402)
+-.+|..|+.+|+.++.+ ++..|.. .+..|.+.+.+++ ....--|+..|+.+
T Consensus 19 h~~LRd~AA~lL~~I~~~~~~~~~~L~~R-----i~~tl~k~l~d~~~~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 19 HWALRDFAASLLAQICRKFSSSYPTLQPR-----ITRTLLKALLDPKKPLGTHYGAIVGLSAL 76 (92)
T ss_pred hHHHHHHHHHHHHHHHHHhccccchHHHH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 458999999999999975 3444443 4566777776544 45677888888877
No 321
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=30.09 E-value=83 Score=31.02 Aligned_cols=61 Identities=20% Similarity=0.098 Sum_probs=41.3
Q ss_pred hhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh------HhH--------HHHHHcCcHHHHHHhhcC
Q 015709 167 ANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNP------LVQ--------KQVLELGALSKLMKMVKS 227 (402)
Q Consensus 167 A~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp------~~Q--------~~~le~g~L~~Ll~LL~s 227 (402)
+....+..-+..+++.|.+++...|..|+.+|..++|+.- .-| ..+.+.|+++.|+.+|+.
T Consensus 53 ~~~~~~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~ 127 (293)
T PF07923_consen 53 LSFDQRKDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKM 127 (293)
T ss_pred cchhhHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3344444455667777788888888899999988888731 111 224456888888888864
No 322
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=29.80 E-value=3.9e+02 Score=23.56 Aligned_cols=101 Identities=16% Similarity=0.071 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHhcCChHh---------HHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcC
Q 015709 188 TDIRKISAWILGKASQNNPLV---------QKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA 258 (402)
Q Consensus 188 ~~Ir~~Aa~vLg~~aqNNp~~---------Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~g 258 (402)
...|..+.++|-++-.+++.. -..+++....+.|++.+.+++..+-..++.-+..+++++....+.=.+.
T Consensus 36 ~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~- 114 (168)
T PF12783_consen 36 ERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEV- 114 (168)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 344455555555554443221 1224456778889998888777777778887887776654322211111
Q ss_pred cHHHHH-HhhcCCCccHHHHHHHHHHHHHHhh
Q 015709 259 GDLMLQ-DILGNSSFEIRLHRKAVSLVGDLAK 289 (402)
Q Consensus 259 Gi~~L~-~lL~s~~~d~klq~kA~~lL~~L~~ 289 (402)
-+..+. .++.+++....-|.-++..+..++.
T Consensus 115 ~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 115 FLSHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 122233 3566554345567778888888885
No 323
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=29.63 E-value=5.2e+02 Score=29.42 Aligned_cols=112 Identities=13% Similarity=0.055 Sum_probs=70.4
Q ss_pred CCHHHHHHhcC-C-------CCHHHHHHHHHHHHHHhc--CChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 015709 174 GGLSVLVGQLN-H-------PDTDIRKISAWILGKASQ--NNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSL 243 (402)
Q Consensus 174 Ggl~~Li~lL~-s-------~~~~Ir~~Aa~vLg~~aq--NNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~L 243 (402)
|-++-+.+.|+ + +++--...|.+.++++.. .-+..-..++++=.++.++--+++..--.+..|++.||-+
T Consensus 408 giLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~ 487 (970)
T COG5656 408 GILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTI 487 (970)
T ss_pred hHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHH
Confidence 44555666662 1 123333556666666654 2233334455555566666666765566789999999988
Q ss_pred hcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015709 244 IRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (402)
Q Consensus 244 iR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~ 290 (402)
-.+++..- +-...++....++++. +.-++..|+-++..+..+
T Consensus 488 eeDfkd~~---ill~aye~t~ncl~nn--~lpv~ieAalAlq~fi~~ 529 (970)
T COG5656 488 EEDFKDNG---ILLEAYENTHNCLKNN--HLPVMIEAALALQFFIFN 529 (970)
T ss_pred HHhcccch---HHHHHHHHHHHHHhcC--CcchhhhHHHHHHHHHhc
Confidence 66665432 2345667777888874 445788999999988864
No 324
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=29.31 E-value=3.7e+02 Score=24.09 Aligned_cols=41 Identities=12% Similarity=0.062 Sum_probs=33.7
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHh
Q 015709 216 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYV 256 (402)
Q Consensus 216 g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~ 256 (402)
-.+|.+..+|.|..+.-...|+..|-.+++++-+-...+..
T Consensus 69 ~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~~f~~~I~~~~~ 109 (164)
T PF13925_consen 69 DLLPLIEELLQSKYESYISVALEMLRSILKKFGPVIRSNLS 109 (164)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999988888888999999999988776666544
No 325
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=29.13 E-value=7.8e+02 Score=26.88 Aligned_cols=124 Identities=20% Similarity=0.172 Sum_probs=65.0
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHhhcCCC-----------------------CHHHHHHHHHHHHHccCCCCchhHHH
Q 015709 115 MEIKELMEKLKTPSDAQLIQIAIDDLNNSTL-----------------------SLEDSQRALQELLILVEPIDNANDLS 171 (402)
Q Consensus 115 ~~L~ea~~~l~~~~d~~lMk~al~~L~~~~~-----------------------t~e~k~~AL~~L~~Lve~iDnA~~l~ 171 (402)
-+.+++.+.+.+ ++..++++|+..|++..- +.+.....+....-|. ||-+-|.
T Consensus 207 lYy~~It~a~~g-~~~~~r~eAL~sL~TDsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl---~Np~i~l 282 (576)
T KOG2549|consen 207 LYYKEITEACTG-SDEPLRQEALQSLETDSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLL---DNPNIFL 282 (576)
T ss_pred HHHHHHHHHHhc-CCHHHHHHHHHhhccCccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHh---cCCccch
Confidence 333455554444 778889999999987540 0111222223333333 3333222
Q ss_pred h---cCCHHHHHHhcCC----------CCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCC--HHHHHHH
Q 015709 172 K---LGGLSVLVGQLNH----------PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF--VEEAVKA 236 (402)
Q Consensus 172 ~---lGgl~~Li~lL~s----------~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~--~~vr~kA 236 (402)
. .-.+|.++.|+-+ .+-.+|.-|+..++.++.+-...-+. +..-.+..|.+.+.+.. ....--|
T Consensus 283 epYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~~~~~st~YGa 361 (576)
T KOG2549|consen 283 EPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNN-LQPRITRTLSKALLDNKKPLSTHYGA 361 (576)
T ss_pred hhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCCCCCchhhhhH
Confidence 2 3356777766632 12348888888888888775544333 33345555666555543 2334444
Q ss_pred HHHHHHH
Q 015709 237 LYTVSSL 243 (402)
Q Consensus 237 l~ALS~L 243 (402)
+..|+.+
T Consensus 362 i~gL~~l 368 (576)
T KOG2549|consen 362 IAGLSEL 368 (576)
T ss_pred HHHHHHh
Confidence 4444443
No 326
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=28.85 E-value=9.4e+02 Score=27.65 Aligned_cols=129 Identities=16% Similarity=0.133 Sum_probs=70.8
Q ss_pred HHHHHHHHHHhcCChhcHHHHH-hcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhH---HhCCc-
Q 015709 234 VKALYTVSSLIRNNLAGQEMFY-VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLF---RDRFF- 308 (402)
Q Consensus 234 ~kAl~ALS~LiR~~~~~~~~f~-~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l---~~~g~- 308 (402)
..++.+|-+++.+ .-+...+. ...++-.|...+.-. .+.+...++.+++.+|.-+-++........+ .+..-
T Consensus 210 ~eiIrClka~mNn-~~Gl~~vL~~e~~lllla~aldpr--~pnmm~dvvkllsalciV~ee~~~ekvl~aiT~~ae~~~v 286 (1102)
T KOG1924|consen 210 QEIIRCLKAFMNN-KFGLVLVLRRERSLLLLARALDPR--EPNMMTDVVKLLSALCIVGEENGLEKVLEAITTIAEAKPV 286 (1102)
T ss_pred HHHHHHHHHHhcc-ccceeeeecCCccHHHHHHhcCcc--CccHHHHHHHHHHHHheeehhhHHHHHHHHHHHHHhhcch
Confidence 4566666666544 33333333 345677777777654 3447889999999998642111111111111 11222
Q ss_pred --HHHHHHhhcCC-ChHHHHHHHHHHHHHhcCChh--h----HHHHHhcCCcHHHHHHHHHHhHHhh
Q 015709 309 --LKSVVDLTASA-DLDLQEKALAAIKNLLQLRTT--E----ALVLKDFCGLDTALERLRQQLQEVM 366 (402)
Q Consensus 309 --v~~Lv~lL~~~-d~dv~E~aL~aL~~L~~~~~~--~----~~~~~~~~GL~~~L~~L~~~~~~l~ 366 (402)
...+|+.|... +..++-.+...+..|.....+ . |..+- .+||...|..|+...++..
T Consensus 287 eRF~piv~gl~~~e~~~l~vacmq~INal~t~p~dldfRlhlR~E~m-r~gL~~~l~~l~~i~n~~l 352 (1102)
T KOG1924|consen 287 ERFRPIVEGLDFLEKQQLQVACMQFINALVTSPSDLDFRLHLRSEFM-RDGLHKYLPDLTEINNDIL 352 (1102)
T ss_pred hhhhhHHHHHhccchHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHH-HHhHHHHHHHhhhhccHHH
Confidence 23456666654 566666666666667665433 1 22333 5788777777766655533
No 327
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=28.22 E-value=9.5e+02 Score=27.51 Aligned_cols=185 Identities=12% Similarity=0.059 Sum_probs=105.0
Q ss_pred CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhc----CCCC----HHHHHHHHHHHH
Q 015709 128 SDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQL----NHPD----TDIRKISAWILG 199 (402)
Q Consensus 128 ~d~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL----~s~~----~~Ir~~Aa~vLg 199 (402)
..-+.|-..++.+.+....-+.-...+.-|.+++.--.|.+.|.++|+++.|+..| ..+. +++-..-..++-
T Consensus 117 gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE 196 (802)
T PF13764_consen 117 GGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEIIE 196 (802)
T ss_pred CCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHHH
Confidence 34566777777777654443444445666666666668999999999999998765 3444 667677777776
Q ss_pred HHhcCC----hHhHHHHHHcCc--------HHHHHHhhcCC----CHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHH
Q 015709 200 KASQNN----PLVQKQVLELGA--------LSKLMKMVKSS----FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLML 263 (402)
Q Consensus 200 ~~aqNN----p~~Q~~~le~g~--------L~~Ll~LL~s~----~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L 263 (402)
.+.+.- ......+....+ +..|++-+.+. ++.+....+..|..++.+++...+.++++= ...
T Consensus 197 ~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~F--~p~ 274 (802)
T PF13764_consen 197 SLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEHF--KPY 274 (802)
T ss_pred HHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHHH--HHh
Confidence 666421 111111112222 67777777754 355666778888889999888777665321 111
Q ss_pred HHh--hc-CCCccHHHHHHHHHHHHHHhhcccc-cCCCCcchhHHhCCcHHHHHHhhc
Q 015709 264 QDI--LG-NSSFEIRLHRKAVSLVGDLAKCQLE-NMHKVEPPLFRDRFFLKSVVDLTA 317 (402)
Q Consensus 264 ~~l--L~-s~~~d~klq~kA~~lL~~L~~~~l~-~~~~~~~~~l~~~g~v~~Lv~lL~ 317 (402)
.+. +. +.+.+.++. +..+..++..... ......++.+.+.|+++..++.|.
T Consensus 275 l~f~~~D~~~~~~~~~~---Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~ 329 (802)
T PF13764_consen 275 LDFDKFDEEHSPDEQFK---LECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLL 329 (802)
T ss_pred cChhhcccccCchHHHH---HHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHH
Confidence 111 11 111122222 3334444432110 111245667778888887777664
No 328
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=27.90 E-value=2.9e+02 Score=31.40 Aligned_cols=62 Identities=18% Similarity=0.178 Sum_probs=49.9
Q ss_pred CCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhc
Q 015709 184 NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG 250 (402)
Q Consensus 184 ~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~ 250 (402)
..+=+.++.+|..+|..+-.|-|+.-.. .|..||.-|-+....+..+|.|-|-.|.+.||.-
T Consensus 314 ~D~L~~vk~raL~ti~~lL~~kPEqE~~-----LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnM 375 (988)
T KOG2038|consen 314 KDPLEEVKKRALKTIYDLLTNKPEQENN-----LLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNM 375 (988)
T ss_pred cccHHHHHHHHHHHHHHHHhCCcHHHHH-----HHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcc
Confidence 3466899999999999999999975443 4566677676666678999999999999999763
No 329
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=27.69 E-value=2.7e+02 Score=26.58 Aligned_cols=55 Identities=20% Similarity=0.313 Sum_probs=35.3
Q ss_pred HHhcCChHhHHHHHHc---CcHHHHHHhhcCCC--HHHHHHHHHHHHHHhcCChhcHHHH
Q 015709 200 KASQNNPLVQKQVLEL---GALSKLMKMVKSSF--VEEAVKALYTVSSLIRNNLAGQEMF 254 (402)
Q Consensus 200 ~~aqNNp~~Q~~~le~---g~L~~Ll~LL~s~~--~~vr~kAl~ALS~LiR~~~~~~~~f 254 (402)
.+..|+|.....-++. +.+..|+..+.++. ..+-...+.+|+.++|.-|.-...+
T Consensus 95 ~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~RP~~~~~I 154 (239)
T PF11935_consen 95 SVPPNHPLLNPQQLEAEANGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQRPQFMSRI 154 (239)
T ss_dssp GS-TT-SSS-HHHHHHHHHHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHHSGGGHHHH
T ss_pred HcCCCCCcCCHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3334555554444443 57888999998877 4557788999999999887654443
No 330
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=27.29 E-value=6.5e+02 Score=25.25 Aligned_cols=129 Identities=13% Similarity=0.143 Sum_probs=84.8
Q ss_pred hHHHHHHcCcHHHHHHhhcC--------C-------------CH--HHHHHHHHHHHHHhcCChhc--------------
Q 015709 208 VQKQVLELGALSKLMKMVKS--------S-------------FV--EEAVKALYTVSSLIRNNLAG-------------- 250 (402)
Q Consensus 208 ~Q~~~le~g~L~~Ll~LL~s--------~-------------~~--~vr~kAl~ALS~LiR~~~~~-------------- 250 (402)
+|..+.+.|.+|.|-+++++ + +| .++..-+-.+.+++.++...
T Consensus 1 vq~~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~ 80 (303)
T PF12463_consen 1 VQTRLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVES 80 (303)
T ss_pred ChHHHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCccccc
Confidence 57888899999999888764 1 12 24556677777776643211
Q ss_pred -----HHHHH--hcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCC-CcchhHHhCCcHHHHHHhhcCC---
Q 015709 251 -----QEMFY--VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHK-VEPPLFRDRFFLKSVVDLTASA--- 319 (402)
Q Consensus 251 -----~~~f~--~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~-~~~~~l~~~g~v~~Lv~lL~~~--- 319 (402)
..... +.|-+..+++.+.....+.+.|---+.++.++++. .++ ..+..+.+.|+++.++..+-++
T Consensus 81 ~~~~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg----~t~~~~Q~fl~~~GLLe~lv~eil~~~~~ 156 (303)
T PF12463_consen 81 ELNSNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRG----ATSYADQAFLAERGLLEHLVSEILSDGCM 156 (303)
T ss_pred cccccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcC----CCcHHHHHHHHhcchHHHHHHHHhcCccc
Confidence 11111 23444555555655545666777777788888764 344 5677889999999999977655
Q ss_pred ChHHHHHHHHHHHHHhcCChh
Q 015709 320 DLDLQEKALAAIKNLLQLRTT 340 (402)
Q Consensus 320 d~dv~E~aL~aL~~L~~~~~~ 340 (402)
+..+..-.-..|+.|......
T Consensus 157 ~~~v~Q~~FDLLGELiK~n~~ 177 (303)
T PF12463_consen 157 SQEVLQSNFDLLGELIKFNRD 177 (303)
T ss_pred hHHHHHHHHHHHHHHHCCCHH
Confidence 446777778888888877543
No 331
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=27.27 E-value=3.9e+02 Score=25.92 Aligned_cols=172 Identities=16% Similarity=0.105 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHccCCCC-----chhHHHhcCCHH-HHHHhcCC--CCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHH
Q 015709 148 EDSQRALQELLILVEPID-----NANDLSKLGGLS-VLVGQLNH--PDTDIRKISAWILGKASQNNPLVQKQVLELGALS 219 (402)
Q Consensus 148 e~k~~AL~~L~~Lve~iD-----nA~~l~~lGgl~-~Li~lL~s--~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~ 219 (402)
++....|.+|...+..-| -++.+.+.+.++ -|+.+|.+ .++.+-..++.++.+++. |.-.
T Consensus 9 ~dcl~~LkdL~r~lr~dd~~~~~v~r~lg~~~iv~~DLiPiL~~~~~~~~l~~~~l~LLV~LT~--P~~~---------- 76 (266)
T PF04821_consen 9 DDCLECLKDLKRFLRRDDEDQRDVRRQLGEWNIVQKDLIPILISYKDDDKLFLACLRLLVNLTW--PIEL---------- 76 (266)
T ss_pred HhHHHHHHHHHHHHHHhCcchHHHHHHHHHhchhhhhHHHHHHhccCchHHHHHHHHHHHHhCC--CHHH----------
Confidence 456666777766553222 244555555555 56777743 478888999999999885 3111
Q ss_pred HHHHhhcCC-CHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhc----C-----CCccHHHHHHHHHHHHHHhh
Q 015709 220 KLMKMVKSS-FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILG----N-----SSFEIRLHRKAVSLVGDLAK 289 (402)
Q Consensus 220 ~Ll~LL~s~-~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~----s-----~~~d~klq~kA~~lL~~L~~ 289 (402)
+ ..+. .+........-+-.... ....+|.+.+.+..++..+. . ...|..+....+.++.|++.
T Consensus 77 -~---~~~~~~~~~~~~~~~~l~~~l~---~yK~afl~~~~l~~~~~~l~~~l~~~~~~rt~~d~~ii~lvL~LiRNlL~ 149 (266)
T PF04821_consen 77 -L---VESQPKDKNQRRNIPELLKYLQ---SYKEAFLDPRVLKALIRLLLPPLEKDWEDRTERDNLIIELVLTLIRNLLA 149 (266)
T ss_pred -h---ccCCCCChHHHHHHHHHHHHHH---HHHHHHcccHHHHHHHHHHhHHhhcccccCCHHHHHHHHHHHHHHHHHhc
Confidence 1 1111 11111111111111111 22234444444444444331 1 11356677888999999875
Q ss_pred ccccc-C----------CCCcchhHHhCCcHHHHHHhhcCC-ChHHHHHHHHHHHHHhcCC
Q 015709 290 CQLEN-M----------HKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKALAAIKNLLQLR 338 (402)
Q Consensus 290 ~~l~~-~----------~~~~~~~l~~~g~v~~Lv~lL~~~-d~dv~E~aL~aL~~L~~~~ 338 (402)
=.-.. . .......|.+.|+...|+.+..+. ..++....+..+.-+....
T Consensus 150 Ip~~~~~~~~~~~~~~~~d~li~~l~~~~v~~lLL~l~s~~~~~~f~~~lLEIi~ll~k~~ 210 (266)
T PF04821_consen 150 IPDPPSASKRSDEDSSLHDQLIWALFESGVLDLLLTLASSPQESDFNLLLLEIIYLLFKGQ 210 (266)
T ss_pred CCCCcccccccchhHHHHHHHHHHHHHcCHHHHHHHHHhCccccchhhHHHHHHHHHHcCC
Confidence 21000 0 012234566889999999998876 4566668888888888764
No 332
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=26.70 E-value=4.5e+02 Score=23.19 Aligned_cols=85 Identities=21% Similarity=0.152 Sum_probs=55.9
Q ss_pred HHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHH-HHcC-cHHHHHH-hhcCCC--HHHHHHHHHHHHHH
Q 015709 169 DLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQV-LELG-ALSKLMK-MVKSSF--VEEAVKALYTVSSL 243 (402)
Q Consensus 169 ~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~-le~g-~L~~Ll~-LL~s~~--~~vr~kAl~ALS~L 243 (402)
.+.+-...+.|+..+.++++.+-..+++++.++..+. +..+ .+.+ .++.++. ++.+++ ...|.-++-++..+
T Consensus 68 ~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~---~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l 144 (168)
T PF12783_consen 68 NLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRF---RSHLKLELEVFLSHIILRILESDNSSLWQKELALEILREL 144 (168)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHH
Confidence 3455567778888887777999999999999999642 1211 1222 3555555 676655 34577889999999
Q ss_pred hcCChhcHHHHHh
Q 015709 244 IRNNLAGQEMFYV 256 (402)
Q Consensus 244 iR~~~~~~~~f~~ 256 (402)
+++..-..+.|..
T Consensus 145 ~~~p~~l~~lf~N 157 (168)
T PF12783_consen 145 CKDPQFLVDLFVN 157 (168)
T ss_pred HhChhHHHHHHHH
Confidence 8765444444443
No 333
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=26.61 E-value=1.7e+02 Score=23.32 Aligned_cols=48 Identities=10% Similarity=0.112 Sum_probs=36.5
Q ss_pred cHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcC
Q 015709 217 ALSKLMKMVKSS-FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGN 269 (402)
Q Consensus 217 ~L~~Ll~LL~s~-~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s 269 (402)
.+.|+..++++. +.++|...+.+|..++..+.... ..||+.+..++..
T Consensus 18 fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i-----~SGW~~if~il~~ 66 (86)
T PF09324_consen 18 FLKPFEYIMSNNPSIDVRELILECILQILQSRGENI-----KSGWKVIFSILRA 66 (86)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHH-----HhccHHHHHHHHH
Confidence 467788876544 57899999999999998765432 3689999998863
No 334
>PF11894 DUF3414: Protein of unknown function (DUF3414); InterPro: IPR021827 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 764 to 2011 amino acids in length. This protein has a conserved LLG sequence motif.
Probab=26.46 E-value=8e+02 Score=30.49 Aligned_cols=62 Identities=8% Similarity=0.141 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHhcCChHhHHHHHHcC---cHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCChh
Q 015709 188 TDIRKISAWILGKASQNNPLVQKQVLELG---ALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLA 249 (402)
Q Consensus 188 ~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g---~L~~Ll~LL~s~~-~~vr~kAl~ALS~LiR~~~~ 249 (402)
..+-..-..+|+.++++++..+..+.+.. .++.|++++...- ..+|...+.+|++++...+.
T Consensus 578 ~~~L~a~L~Li~~V~~~s~~ar~~l~~~~~~~~~~~L~~L~~~~vp~~Lkaai~~~Laal~~~~~~ 643 (1691)
T PF11894_consen 578 VEMLSAYLRLISSVVRNSEQARSALLENPNWNPIDILFGLLSCPVPPSLKAAIFNALAALAAKSPE 643 (1691)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHhCCCCchHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCHH
Confidence 34456678899999999999999998763 6999999998754 46889999999999633443
No 335
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=25.85 E-value=2.2e+02 Score=23.55 Aligned_cols=62 Identities=19% Similarity=0.354 Sum_probs=42.6
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh
Q 015709 178 VLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA 249 (402)
Q Consensus 178 ~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~ 249 (402)
..++-|+.+...|+..+.|++.+.-.. + . .+..+.+-+...+++-+...+|-+..++++...
T Consensus 4 ~~L~~L~~s~~~I~~lt~~~~~~~~~a-~----~-----Iv~~i~~~~~~~~~~~kL~~LYlindIl~n~~~ 65 (121)
T smart00582 4 QKLESLNNSQESIQTLTKWAIEHASHA-K----E-----IVELWEKYIKKAPPPRKLPLLYLLDSIVQNSKR 65 (121)
T ss_pred HHHHhccccHHHHHHHHHHHHHHHHHH-H----H-----HHHHHHHHHHhCCccceehhHHhHHHHHHHHhh
Confidence 345556677789999999999877532 1 1 334445555555556678899999999998643
No 336
>PRK14707 hypothetical protein; Provisional
Probab=25.81 E-value=1.6e+03 Score=29.20 Aligned_cols=175 Identities=9% Similarity=0.079 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHH-ccCCCCchhHHHhcCCHHHHHHhc-CCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhh
Q 015709 148 EDSQRALQELLI-LVEPIDNANDLSKLGGLSVLVGQL-NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV 225 (402)
Q Consensus 148 e~k~~AL~~L~~-Lve~iDnA~~l~~lGgl~~Li~lL-~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL 225 (402)
.++..| ..|.. +..+.+..+.|. ..++.-.++-| +=|+...-..|+.+|+..-...|..+..+--.+ +...+.=|
T Consensus 810 ~Cr~AA-~~LA~rLa~dp~Lr~af~-AQ~VANaLNALSKWPd~~~Cr~AA~aLA~RLa~e~~LR~aL~~Qe-vantLNAL 886 (2710)
T PRK14707 810 ACAAAA-SALAARVADDPRLREAFD-VQHVATVLNAMSKWPDNAVCAAAAGAMAERLADEPELRHTLTAHG-VVIVLNAL 886 (2710)
T ss_pred HHHHHH-HHHHHHHhcChhHHHhcC-HHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcChhhhhccchHH-HHHHHhhh
Confidence 344444 33443 334444444433 34566666666 447888888889999888878887766553222 22233333
Q ss_pred cC-CCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHH-HHHhhcccccCCCCcchhH
Q 015709 226 KS-SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLV-GDLAKCQLENMHKVEPPLF 303 (402)
Q Consensus 226 ~s-~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL-~~L~~~~l~~~~~~~~~~l 303 (402)
+. ++...-.+|..+|..-+.+.+.-.+.| ++-|+.-..+.|+.=.... .-+.|+.+| ..|. .++..+..+
T Consensus 887 SKWPd~~~C~~AA~aLA~rL~~d~~Lrqal-~aQ~VAN~LNALSKWPd~~-~Cr~Aa~aLA~rLa------~d~~Lr~Al 958 (2710)
T PRK14707 887 SKWPNVPVCAAAASALAERLADEPELRKAL-SAHRVATALNALSKWPDIP-VCATAASALAERLS------DDPDLREAL 958 (2710)
T ss_pred ccCCCcHHHHHHHHHHHHHHhcCHHHHhhc-cHHHHHHHHhhhccCCCch-HHHHHHHHHHHHhc------cChhhhhhc
Confidence 32 334556778888888777777666665 4566666666666421233 344444444 3443 245566555
Q ss_pred HhCCcHHHHHHhhcCCChHHHHHHHHHHHH
Q 015709 304 RDRFFLKSVVDLTASADLDLQEKALAAIKN 333 (402)
Q Consensus 304 ~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~ 333 (402)
-.+++...|-.+=+=+|.+...++..+|..
T Consensus 959 n~Q~lsNtLNALSKWPd~~~c~~AA~aLA~ 988 (2710)
T PRK14707 959 DASNLPQVLNALSKWPDVPAGGEVVDALAE 988 (2710)
T ss_pred cHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence 555554444444343555545555545544
No 337
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=25.33 E-value=6.4e+02 Score=24.52 Aligned_cols=92 Identities=11% Similarity=0.083 Sum_probs=58.1
Q ss_pred CCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHH--------HHHHHHHHHHHhcCChhcHHHHHhc
Q 015709 186 PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEE--------AVKALYTVSSLIRNNLAGQEMFYVE 257 (402)
Q Consensus 186 ~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~v--------r~kAl~ALS~LiR~~~~~~~~f~~~ 257 (402)
++...-.+|..+|+..- +.-++|+|+++++-++..+ -.-.-..+.++ ..
T Consensus 54 ~~~~~~~~a~~LLaq~r-----------e~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv------------~~ 110 (249)
T PF06685_consen 54 EEYNLHFYALYLLAQFR-----------EERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASV------------GD 110 (249)
T ss_pred cchHHHHHHHHHHHHHh-----------hhhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHH------------hC
Confidence 33344567777776552 3468999999998655321 11111112222 24
Q ss_pred CcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHh
Q 015709 258 AGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD 305 (402)
Q Consensus 258 gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~ 305 (402)
|-++.|..++.+++.+.-+|..|+.++..++.. ++..++.+++
T Consensus 111 G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~-----~~~~Re~vi~ 153 (249)
T PF06685_consen 111 GDIEPLKELIEDPDADEYVRMAAISALAFLVHE-----GPISREEVIQ 153 (249)
T ss_pred CCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHc-----CCCCHHHHHH
Confidence 566777888888777788999999999999854 5566665543
No 338
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.18 E-value=1.9e+02 Score=30.74 Aligned_cols=71 Identities=14% Similarity=0.067 Sum_probs=50.2
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHH-HHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q 015709 217 ALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQE-MFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDL 287 (402)
Q Consensus 217 ~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~-~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L 287 (402)
++..|-+-+.+.++.++.-||..|=.++.|+..... .|.+-+-+.-++.+.+....+.++|.|++.+|..=
T Consensus 39 AvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W 110 (470)
T KOG1087|consen 39 AVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTW 110 (470)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHH
Confidence 345556666666667777888888888888776555 45555666667777776535788999999998743
No 339
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=25.18 E-value=2.6e+02 Score=27.25 Aligned_cols=65 Identities=17% Similarity=0.038 Sum_probs=39.3
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHh
Q 015709 221 LMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLA 288 (402)
Q Consensus 221 Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~ 288 (402)
|=..|.++++.+|.||+..||.++..-|+. +....-+..|...+.+.=.|...-.-++..+..|.
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~---~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~ 68 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPD---FLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALV 68 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHh---hccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHH
Confidence 335677888899999999999998876642 22333345555554432223334444455555555
No 340
>TIGR00117 acnB aconitate hydratase 2. Aconitate hydratase (aconitase) is an enzyme of the TCA cycle. This model describes aconitase 2, AcnB, which has weak similarity to aconitase 1. It is found almost exclusively in the Proteobacteria.
Probab=25.04 E-value=2.7e+02 Score=31.82 Aligned_cols=102 Identities=19% Similarity=0.145 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCC-CCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChH
Q 015709 129 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEP-IDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPL 207 (402)
Q Consensus 129 d~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~-iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~ 207 (402)
+++.+.++++.|+++.. .+....++-|.+-|-. .|.|- -+|.+-+..++.-=.+...--+..|..+||++--.-
T Consensus 23 ~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~pgvd~aa-~vka~fl~~i~~~~~~~~~i~~~~a~~~l~~m~gg~-- 97 (844)
T TIGR00117 23 NANQMAALVELLKNPPA--GEEEFLLDLLTNRVPPGVDEAA-YVKAGFLAAIAKGEAKCPLISPEKAIELLGTMQGGY-- 97 (844)
T ss_pred CHHHHHHHHHHhcCCCC--ccHHHHHHHHHhCCCCCCChHH-HHHHHHHHHHHcCCCCCcccCHHHHHHHHhhccCCC--
Confidence 45556666666666532 2223344445544433 33332 233333333332111111112455666666664320
Q ss_pred hHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 015709 208 VQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLI 244 (402)
Q Consensus 208 ~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~Li 244 (402)
-+++|+.+|.+++.++...|.-+|+..+
T Consensus 98 ---------~~~~l~~~~~~~~~~~a~~a~~~l~~~~ 125 (844)
T TIGR00117 98 ---------NVHPLIDALDSQDANIAPIAAKALSHTL 125 (844)
T ss_pred ---------CHHHHHHHHhCCCHHHHHHHHHHHhceE
Confidence 1567777776666666666666766633
No 341
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=24.81 E-value=1.6e+02 Score=20.81 Aligned_cols=33 Identities=21% Similarity=0.312 Sum_probs=21.8
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHHhcCChhhHH
Q 015709 311 SVVDLTASADLDLQEKALAAIKNLLQLRTTEAL 343 (402)
Q Consensus 311 ~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~~~ 343 (402)
.+++.|.++++..+++.+.+|.+++..+++..+
T Consensus 11 vl~~fl~~~~~~~~~~llpvi~tlL~fs~~e~~ 43 (46)
T PF01465_consen 11 VLLQFLESREPSEREQLLPVIATLLKFSPEEKQ 43 (46)
T ss_dssp HHHHHHTTSS---HHHHHHHHHHHTT--HHHHH
T ss_pred HHHHHhcCCchhhHHHHHHHHHHHHCCCHHHHH
Confidence 456778888888999999999999988765443
No 342
>PF12055 DUF3536: Domain of unknown function (DUF3536); InterPro: IPR021923 This presumed domain is functionally uncharacterised. This domain is found in bacteria and archaea. This domain is typically between 274 to 285 amino acids in length. This domain is found associated with PF03065 from PFAM.
Probab=24.14 E-value=5.6e+02 Score=25.48 Aligned_cols=101 Identities=22% Similarity=0.156 Sum_probs=56.9
Q ss_pred CCHHHHHHHHHHHHH----ccCCCCchhHHHhcCCHHHHHHh---------cC-CCCHHHHHHHHHHHHHHhcCChHhHH
Q 015709 145 LSLEDSQRALQELLI----LVEPIDNANDLSKLGGLSVLVGQ---------LN-HPDTDIRKISAWILGKASQNNPLVQK 210 (402)
Q Consensus 145 ~t~e~k~~AL~~L~~----Lve~iDnA~~l~~lGgl~~Li~l---------L~-s~~~~Ir~~Aa~vLg~~aqNNp~~Q~ 210 (402)
.+++++..+|.=|++ +.-..-.+.=|-.+.|++++..+ .. -...++...=...|+.+-.|.|....
T Consensus 66 l~~~e~~~al~LLEmQr~~l~mfTSCgWFFdeisgiE~vq~l~yA~RAieLa~~~~g~dle~~Fl~~L~~A~SN~~~~~~ 145 (285)
T PF12055_consen 66 LSPEERVEALKLLEMQRHALLMFTSCGWFFDEISGIETVQILRYAARAIELARELSGVDLEPEFLERLEEAPSNIPEYGN 145 (285)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhhHHHhhhcccchhHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHhCcCCCccCCC
Confidence 466777778777765 22334566667778888876432 21 12334555555666666666553221
Q ss_pred HHHHcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCChhcH
Q 015709 211 QVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQ 251 (402)
Q Consensus 211 ~~le~g~L~~Ll~LL~s~~-~~vr~kAl~ALS~LiR~~~~~~ 251 (402)
|-...-+++...- ...++.|-|||+++..++|+..
T Consensus 146 ------G~~iy~~~V~p~~~~~~~vaah~Ai~slf~~~~~~~ 181 (285)
T PF12055_consen 146 ------GAEIYEKLVRPARVDLERVAAHYAISSLFEEYPEET 181 (285)
T ss_pred ------HHHHHHHhcccccCCHHHHHHHHHHHHHhccccccC
Confidence 2222222222211 2346789999999998877643
No 343
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=23.76 E-value=7e+02 Score=26.44 Aligned_cols=101 Identities=12% Similarity=0.071 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcC------CCccHHHHHHHHHHHHHHhhcccccCCCCcch-h
Q 015709 230 VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGN------SSFEIRLHRKAVSLVGDLAKCQLENMHKVEPP-L 302 (402)
Q Consensus 230 ~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s------~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~-~ 302 (402)
..+...|+-+|+|++-+++.+++.|++..-...+.+.+.. +++..-.-.+-+|+++.|- .+.+. .
T Consensus 111 ~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale--------~~~Rsql 182 (532)
T KOG4464|consen 111 MHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALE--------TDHRSQL 182 (532)
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhh--------HHHHHHH
Confidence 3578899999999999999999999987755555554321 2222223445666666552 23333 3
Q ss_pred HHhCCcHHHHHHhhcCC---------------ChHHHHHHHHHHHHHhcCC
Q 015709 303 FRDRFFLKSVVDLTASA---------------DLDLQEKALAAIKNLLQLR 338 (402)
Q Consensus 303 l~~~g~v~~Lv~lL~~~---------------d~dv~E~aL~aL~~L~~~~ 338 (402)
+.+.+.++.+-+.|..+ +.+....+|.++.++..++
T Consensus 183 ~~~l~Gl~~lt~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~~~ 233 (532)
T KOG4464|consen 183 IAELLGLELLTNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVTCDS 233 (532)
T ss_pred HHHhcccHHHHHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhheeecc
Confidence 34566666666665421 2334445566666666554
No 344
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=23.26 E-value=1.9e+02 Score=28.77 Aligned_cols=76 Identities=22% Similarity=0.169 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHHHHccCCCCch--hHHHhcCCHHHHHHhcCCC--CHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHH
Q 015709 146 SLEDSQRALQELLILVEPIDNA--NDLSKLGGLSVLVGQLNHP--DTDIRKISAWILGKASQNNPLVQKQVLELGALSKL 221 (402)
Q Consensus 146 t~e~k~~AL~~L~~Lve~iDnA--~~l~~lGgl~~Li~lL~s~--~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~L 221 (402)
+.|+..-.+..++.++.+.+.. ++. ...--..++.++.++ ..++|..|..++..+...+|.. +....+..+
T Consensus 175 ~~~d~~w~~~al~~~~~~~~~~~~~~~-~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~----l~~~li~~l 249 (339)
T PF12074_consen 175 SEEDLCWLLRALEALLSDHPSELSSDK-SSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL----LSKSLISGL 249 (339)
T ss_pred CHhHHHHHHHHHHHHHhcchhhhhhhH-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH----HHHHHHHHH
Confidence 4455555556665555443321 111 122234567777776 8999999999999999999974 223334444
Q ss_pred HHhhc
Q 015709 222 MKMVK 226 (402)
Q Consensus 222 l~LL~ 226 (402)
-+.+.
T Consensus 250 ~~~l~ 254 (339)
T PF12074_consen 250 WKWLS 254 (339)
T ss_pred HHHHH
Confidence 44444
No 345
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=23.06 E-value=8.9e+02 Score=25.40 Aligned_cols=108 Identities=19% Similarity=0.196 Sum_probs=61.6
Q ss_pred HhHHHHHHH---HHHcCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhc-CCCC
Q 015709 112 KRQMEIKEL---MEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQL-NHPD 187 (402)
Q Consensus 112 ~r~~~L~ea---~~~l~~~~d~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL-~s~~ 187 (402)
+|.+.++++ ++.+.. +....+=.+...|-.+..+.+.|..++.-|..+++.-+..-..... .+...+ .+..
T Consensus 6 ~R~~a~~~l~~~i~~~~~-~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~----~fF~~I~~~~~ 80 (464)
T PF11864_consen 6 ERIKAAEELCESIQKYPL-SSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRA----EFFRDISDPSN 80 (464)
T ss_pred HHHHHHHHHHHHHHhCCc-hHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHH----HHHHHHhcCCC
Confidence 455555544 444444 4455566666677777778899999999999999866542111111 122333 3333
Q ss_pred HHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhc
Q 015709 188 TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK 226 (402)
Q Consensus 188 ~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~ 226 (402)
++--..-..+|.+++.|--+. ...+++..|.|...+.
T Consensus 81 ~~d~~~~l~aL~~LT~~Grdi--~~~~~~i~~~L~~wl~ 117 (464)
T PF11864_consen 81 DDDFDLRLEALIALTDNGRDI--DFFEYEIGPFLLSWLE 117 (464)
T ss_pred chhHHHHHHHHHHHHcCCcCc--hhcccchHHHHHHHHH
Confidence 322233344555555554445 3356777788777764
No 346
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=23.00 E-value=7.9e+02 Score=24.79 Aligned_cols=130 Identities=18% Similarity=0.166 Sum_probs=67.7
Q ss_pred CCCHHHHHHhHHHHHHHHHHcCCCCHHHHHHHHHHHhhcCC-C---------------------CHHHHHHHHHHHHHcc
Q 015709 104 RLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNST-L---------------------SLEDSQRALQELLILV 161 (402)
Q Consensus 104 ~~s~e~l~~r~~~L~ea~~~l~~~~d~~lMk~al~~L~~~~-~---------------------t~e~k~~AL~~L~~Lv 161 (402)
.+|.| + +.+.+++.+.+.+ ++....+.+++.|++.. . +.......+.-+.-|+
T Consensus 171 ~LS~E-l---q~yf~~It~a~~~-~~~~~r~~aL~sL~tD~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl 245 (343)
T cd08050 171 VLSKE-L---QLYFEEITEALVG-SNEEKRREALQSLRTDPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALL 245 (343)
T ss_pred ccCHH-H---HHHHHHHHHHHhC-CCHHHHHHHHHHhccCCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHh
Confidence 35655 2 3444444444433 44556677777776543 1 1111222333333444
Q ss_pred CCCCchhHHHhcCCHHHHHHhcCC----CC------HHHHHHHHHHHHHHhcC----ChHhHHHHHHcCcHHHHHHhhcC
Q 015709 162 EPIDNANDLSKLGGLSVLVGQLNH----PD------TDIRKISAWILGKASQN----NPLVQKQVLELGALSKLMKMVKS 227 (402)
Q Consensus 162 e~iDnA~~l~~lGgl~~Li~lL~s----~~------~~Ir~~Aa~vLg~~aqN----Np~~Q~~~le~g~L~~Ll~LL~s 227 (402)
.+..---+..-.-.+|+++.||-+ +. -.+|..|+.+++.++.. ++..|..+ +..|.+.+.+
T Consensus 246 ~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri-----~~tl~k~l~d 320 (343)
T cd08050 246 DNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRI-----TRTLLKALLD 320 (343)
T ss_pred cCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHH-----HHHHHHHHcC
Confidence 443222232223468888888732 22 37999999999999864 23333333 2355555554
Q ss_pred CC--HHHHHHHHHHHHHH
Q 015709 228 SF--VEEAVKALYTVSSL 243 (402)
Q Consensus 228 ~~--~~vr~kAl~ALS~L 243 (402)
+. ....--|+..|+.+
T Consensus 321 ~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 321 PKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred CCCCcchhhHHHHHHHHh
Confidence 43 23355666666655
No 347
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=22.78 E-value=96 Score=22.24 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=18.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhh
Q 015709 4 RRNRIASRALWLLVLLMITMAIG 26 (402)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~ 26 (402)
|||+.+-.++++++++.+++..+
T Consensus 13 ~~nk~a~~gl~il~~~vl~ai~~ 35 (56)
T PF12911_consen 13 RRNKLAVIGLIILLILVLLAIFA 35 (56)
T ss_pred HhCchHHHHHHHHHHHHHHHHHH
Confidence 68888888888888887777665
No 348
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=22.44 E-value=1.7e+02 Score=28.85 Aligned_cols=52 Identities=21% Similarity=0.258 Sum_probs=35.8
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh--------------cHHHHHhcCcHHHHHHhhc
Q 015709 217 ALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA--------------GQEMFYVEAGDLMLQDILG 268 (402)
Q Consensus 217 ~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~--------------~~~~f~~~gGi~~L~~lL~ 268 (402)
.+..+++-|.+.+...|.+|+.+|.-++-|.-. +...++++||++.|..+|+
T Consensus 61 ~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 61 FIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred HHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 455666666666666677777777766655311 3445678999999999986
No 349
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=22.17 E-value=5.2e+02 Score=22.33 Aligned_cols=87 Identities=15% Similarity=0.105 Sum_probs=50.8
Q ss_pred HHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcC--cHHHHHHhhc------
Q 015709 197 ILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA--GDLMLQDILG------ 268 (402)
Q Consensus 197 vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~g--Gi~~L~~lL~------ 268 (402)
=|+.++.+++..... .+..|.+=|++.++-|+.|+|--|-.++++.++.....+..+ .|..+.+.=.
T Consensus 24 Eia~~t~~s~~~~~e-----i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~ 98 (122)
T cd03572 24 EIAKLTRKSVGSCQE-----LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLK 98 (122)
T ss_pred HHHHHHHcCHHHHHH-----HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCccc
Confidence 344555554433332 356788888888888999999999999988665444333333 2222222211
Q ss_pred CCCccHHHHHHHHHHHHHHh
Q 015709 269 NSSFEIRLHRKAVSLVGDLA 288 (402)
Q Consensus 269 s~~~d~klq~kA~~lL~~L~ 288 (402)
.+.....+|..|--++..|.
T Consensus 99 Gd~~~~~VR~~A~El~~~if 118 (122)
T cd03572 99 GDSLNEKVREEAQELIKAIF 118 (122)
T ss_pred CcchhHHHHHHHHHHHHHHh
Confidence 11124566777766666554
No 350
>PF08454 RIH_assoc: RyR and IP3R Homology associated; InterPro: IPR013662 This eukaryotic domain is found in ryanodine receptors (RyR) and inositol 1, 4, 5-trisphosphate receptors (IP3R) which together form a superfamily of homotetrameric ligand-gated intracellular Ca2+ channels []. There seems to be no known function for this domain []. Also see the IP3-binding domain IPR000699 from INTERPRO and IPR003608 from INTERPRO.
Probab=21.19 E-value=1.6e+02 Score=24.81 Aligned_cols=44 Identities=11% Similarity=-0.043 Sum_probs=37.5
Q ss_pred CCCCHHHHHHHHHHHHHHhcC-ChHhHHHHHHcCcHHHHHHhhcC
Q 015709 184 NHPDTDIRKISAWILGKASQN-NPLVQKQVLELGALSKLMKMVKS 227 (402)
Q Consensus 184 ~s~~~~Ir~~Aa~vLg~~aqN-Np~~Q~~~le~g~L~~Ll~LL~s 227 (402)
...+-++-..+..+|...+|+ ++..|..+.+..++..+..+|..
T Consensus 63 ~~~~~~~~~q~~~tL~E~iQGPC~eNQ~~l~~s~~~~~i~~lL~~ 107 (109)
T PF08454_consen 63 NSDNIELIIQCFDTLTEFIQGPCIENQIALANSKFLDIINDLLSK 107 (109)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCHHhHHHHHHccHHHHHHHHHhh
Confidence 445566778889999999999 99999999999999999888854
No 351
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=20.78 E-value=8.3e+02 Score=24.18 Aligned_cols=192 Identities=15% Similarity=0.076 Sum_probs=95.0
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcC--ChHh
Q 015709 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQN--NPLV 208 (402)
Q Consensus 131 ~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqN--Np~~ 208 (402)
+.+...+.++.. +..+.....++..|...+... ..=..-..+..+..-++...+.+|..-+.++|.+... |...
T Consensus 22 ~i~~~l~~~~~K-E~nE~aL~~~l~al~~~~~~~---~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~ 97 (339)
T PF12074_consen 22 KIVQGLSPLLSK-ESNEAALSALLSALFKHLFFL---SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDS 97 (339)
T ss_pred HHHHHHHHHHHh-hcCHHHHHHHHHHHHHHHHHh---CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchH
Confidence 344444555544 345555666666666544333 0001112345566667777777999999999999871 1111
Q ss_pred HHHHHHcCcHHHHHHhhcCC----CHHHH---HHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhh-cCCC----ccHHH
Q 015709 209 QKQVLELGALSKLMKMVKSS----FVEEA---VKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDIL-GNSS----FEIRL 276 (402)
Q Consensus 209 Q~~~le~g~L~~Ll~LL~s~----~~~vr---~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL-~s~~----~d~kl 276 (402)
..+. ...+|.|++.++.. .+... .-+.|++-.+.+......+. -......+ -+++ .++|+
T Consensus 98 -~~~~-~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~------~~~~~~~l~~~~kps~ll~~kv 169 (339)
T PF12074_consen 98 -LKFA-EPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDS------KNISFWSLALDPKPSFLLSEKV 169 (339)
T ss_pred -HHHH-HHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhh------hhhhhhhhccCCCcchhcCHHH
Confidence 1122 24788888888532 12212 22333333321111111111 00000100 0110 12344
Q ss_pred HHH------HHHH---HHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCC--ChHHHHHHHHHHHHHhcCCh
Q 015709 277 HRK------AVSL---VGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEKALAAIKNLLQLRT 339 (402)
Q Consensus 277 q~k------A~~l---L~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~--d~dv~E~aL~aL~~L~~~~~ 339 (402)
-.| ..|+ +..+..+ ......... ...+-+.++.++.+. ...+|..|+.+|..+....+
T Consensus 170 yskl~~~~d~~w~~~al~~~~~~----~~~~~~~~~-~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~ 238 (339)
T PF12074_consen 170 YSKLASEEDLCWLLRALEALLSD----HPSELSSDK-SSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNP 238 (339)
T ss_pred HhccCCHhHHHHHHHHHHHHHhc----chhhhhhhH-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCh
Confidence 444 3333 3333321 111111111 345677888888887 89999999999998877543
No 352
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=20.78 E-value=1.8e+02 Score=33.62 Aligned_cols=117 Identities=16% Similarity=0.156 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHccCCCCchhHHHh--------cCCHHHHHHhcC---C-CCHHHHHHHHHHHHHHhcCChH--------
Q 015709 148 EDSQRALQELLILVEPIDNANDLSK--------LGGLSVLVGQLN---H-PDTDIRKISAWILGKASQNNPL-------- 207 (402)
Q Consensus 148 e~k~~AL~~L~~Lve~iDnA~~l~~--------lGgl~~Li~lL~---s-~~~~Ir~~Aa~vLg~~aqNNp~-------- 207 (402)
|-..-||+.|..+..-.+-...+.. ..|+..+++--+ + -+|+|+..|..||-+++.--|.
T Consensus 624 d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dpei~~~AL~vIincVc~pp~~r~s~i~~ 703 (1516)
T KOG1832|consen 624 DLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVDPEIIQPALNVIINCVCPPPTTRPSTIVA 703 (1516)
T ss_pred HHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccccccccCHHHHHHHHhhhheeecCCCCcchhhhhh
Confidence 4456677777654432222222211 137777765432 2 3799999999999999865322
Q ss_pred ---------------------------hHHHHHHcCcHHHHHHhhcCCC-----HHHHHHHHHHHHHHhcCChhcHHHH-
Q 015709 208 ---------------------------VQKQVLELGALSKLMKMVKSSF-----VEEAVKALYTVSSLIRNNLAGQEMF- 254 (402)
Q Consensus 208 ---------------------------~Q~~~le~g~L~~Ll~LL~s~~-----~~vr~kAl~ALS~LiR~~~~~~~~f- 254 (402)
..+.+...+||..|++||+-.. ..+|+-|..+|-.+.|+.. ..+-+
T Consensus 704 v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~t-VrQIlt 782 (1516)
T KOG1832|consen 704 VGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPPTTADCIRALACRVLLGLARDDT-VRQILT 782 (1516)
T ss_pred ccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCcHHHHHHHHHHHHhccccCcH-HHHHHH
Confidence 2233444589999999998532 4578899999999999743 33333
Q ss_pred ----HhcCcHHHHHH
Q 015709 255 ----YVEAGDLMLQD 265 (402)
Q Consensus 255 ----~~~gGi~~L~~ 265 (402)
+.+.|++.|+.
T Consensus 783 KLpLvt~~~~q~lm~ 797 (1516)
T KOG1832|consen 783 KLPLVTNERAQILMA 797 (1516)
T ss_pred hCccccchHHHHHhh
Confidence 34566666554
No 353
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=20.51 E-value=3.4e+02 Score=24.79 Aligned_cols=16 Identities=13% Similarity=0.260 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHhc
Q 015709 188 TDIRKISAWILGKASQ 203 (402)
Q Consensus 188 ~~Ir~~Aa~vLg~~aq 203 (402)
..||..|..++..+..
T Consensus 21 DrvR~~A~~~l~~ll~ 36 (193)
T PF12612_consen 21 DRVREVAGKCLQRLLH 36 (193)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 4466666666666663
No 354
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=20.36 E-value=1.2e+02 Score=27.62 Aligned_cols=39 Identities=21% Similarity=0.043 Sum_probs=16.5
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHhhhHHHhhccCCCcccccc
Q 015709 1 MNTRRNRIASRALWLLVLLMITMAIGRAERVNNSSSAGLFWST 43 (402)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 43 (402)
||+||.+ |.+|+++.+..++++. +-.....+++..+|-|
T Consensus 1 M~~~r~r---Rl~~v~~~~~~~~~a~-~Lvl~al~~n~~yF~t 39 (159)
T PRK13150 1 MNLRRKN---RLWVVCAVLAGLGLTT-ALVLYALRANIDLFYT 39 (159)
T ss_pred CChhhhh---HHHHHHHHHHHHHHHH-HHHHHHHhhCccEEeC
Confidence 7766644 2222223333333333 4444444444444444
No 355
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=20.28 E-value=3e+02 Score=22.96 Aligned_cols=64 Identities=22% Similarity=0.222 Sum_probs=43.6
Q ss_pred cHHHHHHhhcCCCc--cHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHH
Q 015709 259 GDLMLQDILGNSSF--EIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAI 331 (402)
Q Consensus 259 Gi~~L~~lL~s~~~--d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL 331 (402)
-++.+.+++..... ...+...+..++.+.+.. -....+.+.++++.+.++|.++ .+++.|+.+|
T Consensus 83 i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~-------~~~~~i~~~~~l~~~~~~l~~~--~~~~~A~~cl 148 (148)
T PF08389_consen 83 ILEILSQILSQSSSEANEELVKAALKCLKSWISW-------IPIELIINSNLLNLIFQLLQSP--ELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTT-------S-HHHHHSSSHHHHHHHHTTSC--CCHHHHHHHH
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHh-------CCHHHhccHHHHHHHHHHcCCH--HHHHHHHHhC
Confidence 34555555554321 167888999999988742 3345667788999999999655 4588888765
No 356
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=20.23 E-value=1.7e+02 Score=33.64 Aligned_cols=21 Identities=19% Similarity=0.271 Sum_probs=17.7
Q ss_pred CCCHHHHHHhHHHHHHHHHHc
Q 015709 104 RLSPSELKKRQMEIKELMEKL 124 (402)
Q Consensus 104 ~~s~e~l~~r~~~L~ea~~~l 124 (402)
.-|+|++++.|++|++||+.+
T Consensus 519 gAsdeEI~~Lm~eLR~Am~~y 539 (851)
T TIGR02302 519 GASDEEIKQLTDKLRAAMQTY 539 (851)
T ss_pred CCCHHHHHHHHHHHHHHHHHH
Confidence 458889999999999999743
No 357
>PF09450 DUF2019: Domain of unknown function (DUF2019); InterPro: IPR018568 Protein of unknown function found in bacteria. ; PDB: 2I9C_A.
Probab=20.19 E-value=73 Score=26.98 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=17.9
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHH
Q 015709 176 LSVLVGQLNHPDTDIRKISAWIL 198 (402)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~vL 198 (402)
-..|+.||+|+++.||..||.-+
T Consensus 49 r~aLl~LL~hpn~~VRl~AA~~~ 71 (106)
T PF09450_consen 49 RDALLPLLKHPNMQVRLWAAAHT 71 (106)
T ss_dssp GGGGGGGGGSS-HHHHHHHHHTT
T ss_pred HHHHHHHHcCCChhHHHHHHHHH
Confidence 46788999999999998877543
No 358
>PLN03205 ATR interacting protein; Provisional
Probab=20.17 E-value=1.9e+02 Score=30.47 Aligned_cols=119 Identities=14% Similarity=0.147 Sum_probs=79.1
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhc--CcHHHHHHhhc---CCCccHHHHHHHHHHHHHHhhcc
Q 015709 217 ALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVE--AGDLMLQDILG---NSSFEIRLHRKAVSLVGDLAKCQ 291 (402)
Q Consensus 217 ~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~--gGi~~L~~lL~---s~~~d~klq~kA~~lL~~L~~~~ 291 (402)
.+++|+.|..-++..+...++..|-.++.|--.....|... --|-.|..++. ..++...+|..|+....-++...
T Consensus 324 LlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIlmss 403 (652)
T PLN03205 324 LVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNIIVMST 403 (652)
T ss_pred HHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHhhhcc
Confidence 46788888887777777777777777776644444555321 12333333332 12346678889988877666431
Q ss_pred cccCCCCcchhHHhCCcHHHHHHhhcCC-ChHHHHHHHHHHHHHhcCC
Q 015709 292 LENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKALAAIKNLLQLR 338 (402)
Q Consensus 292 l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~dv~E~aL~aL~~L~~~~ 338 (402)
.....++.|-..-+.+.+.++|+.+ -.-+|.+++..|.-|+..+
T Consensus 404 ---na~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLNCp 448 (652)
T PLN03205 404 ---DAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLNCP 448 (652)
T ss_pred ---chhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHcCc
Confidence 1223456676677888899999876 6789999999998888765
No 359
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=20.12 E-value=1.3e+02 Score=27.30 Aligned_cols=40 Identities=18% Similarity=0.084 Sum_probs=16.7
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHhhhHHHhhccCCCccccccc
Q 015709 1 MNTRRNRIASRALWLLVLLMITMAIGRAERVNNSSSAGLFWSTA 44 (402)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 44 (402)
||+||.+ |.+|+++.+..++.+. +-.....+++..+|-|-
T Consensus 1 M~~~r~r---Rl~~v~~~~~~~~~a~-~Lv~~al~~n~~yF~tp 40 (155)
T PRK13159 1 MNATRKQ---RLWLVIGVLTAAALAV-TLIVLALQRNMSYLFTP 40 (155)
T ss_pred CChhhhh---HHHHHHHHHHHHHHHH-HHHHHHhhhCceEEECH
Confidence 7766644 2222222223333333 33444444444444443
No 360
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=20.09 E-value=4.6e+02 Score=22.10 Aligned_cols=100 Identities=19% Similarity=0.122 Sum_probs=48.7
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCC-CchhHHHh--cCCHHHHHHhcCC----CCHHHHHHHHHHHHHHhc
Q 015709 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPI-DNANDLSK--LGGLSVLVGQLNH----PDTDIRKISAWILGKASQ 203 (402)
Q Consensus 131 ~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~i-DnA~~l~~--lGgl~~Li~lL~s----~~~~Ir~~Aa~vLg~~aq 203 (402)
..++.+++.|...+.+.|..+.||...+.||..- +..+++.. ...+..|+.+=+. +-.+.|..|+-.+...+
T Consensus 3 vYlrDll~~L~~~~~~~e~~e~aL~~a~~LIR~k~~fg~el~~~a~eL~~~Ll~L~~~f~~~~Fe~~R~~alval~v~~- 81 (114)
T PF10193_consen 3 VYLRDLLEYLRSDDEDYEKFEAALKSAEKLIRRKPDFGTELSEYAEELLKALLHLQNKFDIENFEELRQNALVALVVAA- 81 (114)
T ss_dssp --HHHHHHHHT------S-SHHHHHHHHHHHHS-----SSHHHHHHHHHHHHHH---TT--TTTTHHHHHHHHHHHHHS-
T ss_pred chHHHHHHHHhcCcCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHHHHHh-
Confidence 4567778888765545667788999999998653 32222222 2233344433222 23678887777666664
Q ss_pred CChHhHHHHHHcCcHHHHHHhhcCCCHH--HHHHHHHHHH
Q 015709 204 NNPLVQKQVLELGALSKLMKMVKSSFVE--EAVKALYTVS 241 (402)
Q Consensus 204 NNp~~Q~~~le~g~L~~Ll~LL~s~~~~--vr~kAl~ALS 241 (402)
|. -+.|.|++.+-+.+-+ -|.-.+.+|+
T Consensus 82 --P~--------~~~~~L~~~f~~~~~Sl~qR~~iL~~l~ 111 (114)
T PF10193_consen 82 --PE--------KVAPYLTEEFFSGDYSLQQRMSILSALS 111 (114)
T ss_dssp --GG--------GHHH-HHHHHTTS---THHHHHHHHHHH
T ss_pred --hH--------HHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 42 2346677777665533 3555555554
Done!