Query 015709
Match_columns 402
No_of_seqs 262 out of 1197
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 17:19:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015709.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015709hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xqr_A HSPBP1 protein; armadil 100.0 3.1E-39 1.1E-43 316.1 22.3 252 115-378 14-281 (296)
2 4hxt_A De novo protein OR329; 99.9 3.3E-22 1.1E-26 184.4 22.6 217 133-358 4-221 (252)
3 4db6_A Armadillo repeat protei 99.9 4.9E-22 1.7E-26 180.2 21.5 192 136-336 17-209 (210)
4 4db8_A Armadillo-repeat protei 99.9 1.2E-21 4E-26 182.3 19.8 205 147-358 26-231 (252)
5 4db6_A Armadillo repeat protei 99.9 5.4E-21 1.8E-25 173.3 19.3 181 171-358 9-189 (210)
6 4hxt_A De novo protein OR329; 99.9 2.9E-20 9.8E-25 171.4 22.1 199 132-339 45-244 (252)
7 4db8_A Armadillo-repeat protei 99.9 1.4E-20 4.7E-25 175.0 20.1 196 132-336 55-251 (252)
8 3nmw_A APC variant protein; AR 99.9 2.8E-20 9.4E-25 186.0 21.1 212 147-360 98-316 (354)
9 3ul1_B Importin subunit alpha- 99.8 1.8E-19 6.1E-24 187.1 26.8 220 133-359 59-284 (510)
10 3tpo_A Importin subunit alpha- 99.8 2.2E-19 7.4E-24 187.0 22.0 208 146-360 264-478 (529)
11 3tt9_A Plakophilin-2; cell adh 99.8 2.8E-19 9.5E-24 169.2 20.3 181 175-363 9-208 (233)
12 3tpo_A Importin subunit alpha- 99.8 1.1E-18 3.8E-23 181.6 26.6 220 133-359 78-303 (529)
13 3nmz_A APC variant protein; pr 99.8 1.9E-19 6.5E-24 185.8 19.2 212 147-360 214-432 (458)
14 1xm9_A Plakophilin 1; armadill 99.8 5.3E-19 1.8E-23 181.4 22.0 174 134-317 5-195 (457)
15 3ul1_B Importin subunit alpha- 99.8 3.8E-19 1.3E-23 184.6 20.4 208 146-360 245-459 (510)
16 3nmw_A APC variant protein; AR 99.8 1.1E-19 3.7E-24 181.8 14.9 206 148-360 47-274 (354)
17 4b8j_A Importin subunit alpha- 99.8 1.3E-17 4.4E-22 172.0 27.3 219 133-360 76-297 (528)
18 4b8j_A Importin subunit alpha- 99.8 2.3E-18 7.9E-23 177.6 21.5 218 133-359 246-476 (528)
19 2jdq_A Importin alpha-1 subuni 99.8 7.9E-18 2.7E-22 168.2 22.3 198 133-338 194-392 (450)
20 3nmz_A APC variant protein; pr 99.8 3.3E-18 1.1E-22 176.5 19.2 197 134-339 246-453 (458)
21 1xm9_A Plakophilin 1; armadill 99.8 5.5E-18 1.9E-22 173.8 20.7 177 175-361 3-197 (457)
22 1wa5_B Importin alpha subunit; 99.8 4.7E-17 1.6E-21 168.3 27.0 218 133-359 89-309 (530)
23 3tt9_A Plakophilin-2; cell adh 99.8 6.3E-18 2.1E-22 159.9 16.7 197 133-336 10-229 (233)
24 3now_A UNC-45 protein, SD10334 99.8 6.1E-18 2.1E-22 184.7 18.6 223 131-360 377-634 (810)
25 1wa5_B Importin alpha subunit; 99.8 2.8E-17 9.7E-22 170.0 22.1 219 133-359 132-351 (530)
26 2jdq_A Importin alpha-1 subuni 99.8 3.4E-17 1.2E-21 163.6 22.0 219 132-359 65-286 (450)
27 3l6x_A Catenin delta-1; cateni 99.8 5E-17 1.7E-21 172.0 22.9 182 172-361 46-247 (584)
28 1jdh_A Beta-catenin; beta-cate 99.7 2E-16 6.8E-21 161.6 24.4 221 132-360 60-319 (529)
29 3now_A UNC-45 protein, SD10334 99.7 2E-17 6.9E-22 180.6 17.8 217 133-359 538-760 (810)
30 1xqr_A HSPBP1 protein; armadil 99.7 5.7E-17 2E-21 158.3 17.3 166 188-360 54-220 (296)
31 2z6h_A Catenin beta-1, beta-ca 99.7 7.3E-16 2.5E-20 163.7 25.2 222 131-360 56-316 (644)
32 3l6x_A Catenin delta-1; cateni 99.7 4.4E-16 1.5E-20 164.8 18.9 196 133-337 50-271 (584)
33 2z6g_A B-catenin; FULL-length, 99.7 5.3E-15 1.8E-19 161.3 25.3 221 132-360 193-452 (780)
34 1jdh_A Beta-catenin; beta-cate 99.7 3.4E-15 1.2E-19 152.4 21.1 221 133-363 187-411 (529)
35 2z6h_A Catenin beta-1, beta-ca 99.6 6.7E-15 2.3E-19 156.3 21.0 223 133-364 184-472 (644)
36 2z6g_A B-catenin; FULL-length, 99.6 1E-14 3.5E-19 159.1 16.9 220 131-360 399-645 (780)
37 3opb_A SWI5-dependent HO expre 99.4 1.5E-12 5.3E-17 140.7 18.4 218 132-361 458-709 (778)
38 3grl_A General vesicular trans 99.4 3.4E-12 1.2E-16 135.1 19.2 223 132-359 61-321 (651)
39 3opb_A SWI5-dependent HO expre 99.4 3.5E-12 1.2E-16 138.0 19.5 168 166-339 449-638 (778)
40 3grl_A General vesicular trans 99.1 2.8E-09 9.6E-14 113.0 19.2 217 127-354 17-259 (651)
41 4gmo_A Putative uncharacterize 99.0 2.9E-09 1E-13 114.5 12.9 169 175-349 35-227 (684)
42 3ltj_A Alpharep-4; protein eng 99.0 6.7E-08 2.3E-12 86.5 19.5 154 129-334 12-165 (201)
43 3ltm_A Alpha-REP4; protein eng 98.9 7E-08 2.4E-12 87.0 18.0 154 130-335 18-171 (211)
44 3ltj_A Alpharep-4; protein eng 98.8 5.2E-08 1.8E-12 87.2 14.4 151 133-335 47-197 (201)
45 3ltm_A Alpha-REP4; protein eng 98.8 6.3E-08 2.2E-12 87.4 13.9 155 132-338 51-205 (211)
46 4gmo_A Putative uncharacterize 98.7 4.7E-08 1.6E-12 105.1 12.9 192 136-335 39-257 (684)
47 1oyz_A Hypothetical protein YI 98.7 6.1E-07 2.1E-11 84.4 18.9 121 183-335 100-220 (280)
48 1oyz_A Hypothetical protein YI 98.7 8.1E-07 2.8E-11 83.5 17.7 146 146-335 104-249 (280)
49 2qk2_A LP04448P; mini spindles 98.4 5.1E-06 1.7E-10 76.9 15.9 174 145-337 27-206 (242)
50 3dad_A FH1/FH2 domain-containi 98.4 8.8E-06 3E-10 80.1 17.9 194 128-327 115-327 (339)
51 3b2a_A TON_1937, putative unch 98.4 1.9E-05 6.4E-10 74.2 18.6 186 132-338 34-220 (265)
52 1te4_A Conserved protein MTH18 98.4 3.2E-08 1.1E-12 83.7 -0.5 120 173-333 11-130 (131)
53 1b3u_A Protein (protein phosph 98.4 4.6E-06 1.6E-10 85.4 14.6 172 146-335 415-586 (588)
54 4fdd_A Transportin-1; heat rep 98.3 1.1E-06 3.8E-11 95.6 10.3 175 150-336 338-512 (852)
55 2vgl_B AP-2 complex subunit be 98.3 9E-06 3.1E-10 85.5 16.1 161 112-290 29-190 (591)
56 1b3u_A Protein (protein phosph 98.3 1E-05 3.5E-10 82.7 16.2 175 146-334 177-351 (588)
57 2vgl_B AP-2 complex subunit be 98.2 2.5E-05 8.5E-10 82.1 17.6 165 147-339 27-192 (591)
58 2qk1_A Protein STU2; STU2P, XM 98.2 1.7E-05 5.8E-10 74.8 13.8 182 145-336 28-220 (249)
59 4fdd_A Transportin-1; heat rep 98.2 7.3E-06 2.5E-10 89.2 12.2 180 146-337 269-472 (852)
60 1ibr_B P95, importin beta-1 su 98.1 9.4E-05 3.2E-09 73.1 17.5 199 130-337 171-438 (462)
61 3qml_C Protein SLS1, nucleotid 98.1 1.1E-05 3.9E-10 78.2 10.3 137 147-289 42-189 (315)
62 1w63_A Adapter-related protein 98.0 0.00012 4.1E-09 77.5 17.2 180 132-338 71-265 (618)
63 1te4_A Conserved protein MTH18 97.9 7.8E-06 2.7E-10 68.8 5.1 87 176-286 44-130 (131)
64 1qgr_A Protein (importin beta 97.9 6.8E-05 2.3E-09 80.6 13.4 180 149-338 344-539 (876)
65 1u6g_C TIP120 protein, CAND1; 97.9 0.00013 4.4E-09 82.5 16.2 192 134-338 9-206 (1230)
66 2bpt_A Importin beta-1 subunit 97.9 9.7E-05 3.3E-09 79.2 14.0 181 148-339 346-532 (861)
67 2bpt_A Importin beta-1 subunit 97.9 0.00019 6.4E-09 77.0 16.1 195 131-337 369-586 (861)
68 1ibr_B P95, importin beta-1 su 97.8 0.00012 4.2E-09 72.3 12.5 155 174-337 128-289 (462)
69 3b2a_A TON_1937, putative unch 97.7 0.00064 2.2E-08 63.9 14.8 149 175-339 34-182 (265)
70 1u6g_C TIP120 protein, CAND1; 97.7 0.0011 3.6E-08 75.0 19.6 199 130-337 47-285 (1230)
71 2qk2_A LP04448P; mini spindles 97.7 0.00088 3E-08 61.6 15.5 147 130-290 55-206 (242)
72 1qgr_A Protein (importin beta 97.7 0.00072 2.4E-08 72.6 16.6 200 130-338 171-397 (876)
73 1w63_A Adapter-related protein 97.6 0.0012 4.2E-08 69.7 16.5 169 139-339 42-211 (618)
74 2vgl_A Adaptor protein complex 97.6 0.0037 1.3E-07 66.3 19.7 175 138-338 42-218 (621)
75 3dad_A FH1/FH2 domain-containi 97.5 0.0036 1.2E-07 61.5 17.3 154 178-339 122-289 (339)
76 3tjz_B Coatomer subunit gamma; 97.5 0.0049 1.7E-07 61.2 18.0 185 127-338 22-207 (355)
77 4ffb_C Protein STU2; tubulin f 97.3 0.0052 1.8E-07 57.9 15.3 180 146-337 22-213 (278)
78 2qk1_A Protein STU2; STU2P, XM 97.1 0.012 3.9E-07 55.2 15.4 155 130-289 59-220 (249)
79 2vgl_A Adaptor protein complex 97.1 0.0075 2.6E-07 63.9 15.6 129 146-290 87-217 (621)
80 2db0_A 253AA long hypothetical 97.1 0.03 1E-06 51.0 16.7 140 184-345 80-219 (253)
81 3eg5_B Protein diaphanous homo 96.9 0.073 2.5E-06 53.2 19.4 169 152-326 86-284 (383)
82 2db0_A 253AA long hypothetical 96.7 0.21 7.2E-06 45.5 18.9 200 114-337 31-247 (253)
83 3tjz_B Coatomer subunit gamma; 96.5 0.28 9.7E-06 48.5 20.7 157 112-289 43-205 (355)
84 1ho8_A Vacuolar ATP synthase s 96.2 0.32 1.1E-05 49.9 19.2 241 132-389 78-352 (480)
85 2of3_A ZYG-9; multifunctional 95.9 0.14 4.7E-06 48.8 14.1 168 146-337 59-237 (266)
86 3ibv_A Exportin-T; karyopherin 95.9 0.53 1.8E-05 52.5 21.0 112 126-246 1-120 (980)
87 2f31_A Diaphanous protein homo 95.9 0.18 6.3E-06 46.6 14.6 125 162-289 32-180 (233)
88 2fv2_A RCD1 required for cell 95.8 0.2 6.9E-06 47.4 14.3 207 131-346 3-233 (268)
89 2bnx_A Diaphanous protein homo 95.2 0.87 3E-05 45.4 17.8 159 162-326 36-222 (386)
90 4ady_A RPN2, 26S proteasome re 95.1 0.16 5.5E-06 56.3 12.9 133 176-339 543-679 (963)
91 2x19_B Importin-13; nuclear tr 95.0 0.52 1.8E-05 51.4 16.6 138 184-338 459-601 (963)
92 2f31_A Diaphanous protein homo 94.9 1.6 5.5E-05 40.1 17.6 143 214-360 41-209 (233)
93 3eg5_B Protein diaphanous homo 94.8 2.1 7.2E-05 42.5 19.2 241 100-361 5-276 (383)
94 2bnx_A Diaphanous protein homo 94.7 1 3.5E-05 44.8 16.7 139 215-360 46-213 (386)
95 4hat_C Exportin-1; heat repeat 94.6 0.19 6.3E-06 56.4 12.1 139 186-339 465-621 (1023)
96 2iw3_A Elongation factor 3A; a 94.6 0.62 2.1E-05 52.0 16.0 188 131-336 133-324 (986)
97 1wa5_C Importin alpha RE-expor 94.3 0.4 1.4E-05 52.8 13.8 181 146-337 418-629 (960)
98 1ho8_A Vacuolar ATP synthase s 93.8 0.045 1.5E-06 56.2 4.4 82 166-247 385-478 (480)
99 4ady_A RPN2, 26S proteasome re 93.6 1.1 3.8E-05 49.7 15.5 139 128-288 574-718 (963)
100 2x1g_F Cadmus; transport prote 93.6 0.6 2.1E-05 51.1 13.5 131 146-289 477-615 (971)
101 1upk_A MO25 protein; transfera 93.2 4.7 0.00016 39.5 17.6 145 193-343 142-290 (341)
102 2x19_B Importin-13; nuclear tr 93.1 1.1 3.7E-05 48.9 14.5 136 145-289 461-599 (963)
103 3ebb_A Phospholipase A2-activa 93.0 4.7 0.00016 38.8 17.3 206 103-326 75-296 (304)
104 3gs3_A Symplekin, LD45768P; he 92.8 6.2 0.00021 37.1 17.4 179 146-337 28-244 (257)
105 1wa5_C Importin alpha RE-expor 92.7 2.3 8E-05 46.6 16.4 194 134-337 458-671 (960)
106 3u0r_A Apoptosis inhibitor 5; 92.6 1.1 3.9E-05 45.9 12.7 80 178-270 33-112 (507)
107 2x1g_F Cadmus; transport prote 92.4 0.94 3.2E-05 49.6 12.8 134 186-337 476-616 (971)
108 1lsh_A Lipovitellin (LV-1N, LV 91.9 5.3 0.00018 44.8 18.2 141 101-255 319-477 (1056)
109 2fv2_A RCD1 required for cell 91.4 2.3 7.8E-05 40.2 12.3 198 79-288 2-223 (268)
110 2iw3_A Elongation factor 3A; a 90.9 2.3 7.8E-05 47.5 13.7 172 148-336 29-204 (986)
111 3ldz_A STAM-1, signal transduc 90.9 0.65 2.2E-05 39.7 7.5 69 176-244 44-113 (140)
112 3m1i_C Exportin-1; heat repeat 90.6 2.1 7.3E-05 47.5 13.3 147 186-338 465-620 (1049)
113 1mhq_A ADP-ribosylation factor 90.5 0.85 2.9E-05 39.4 7.9 72 176-247 40-118 (148)
114 3o2t_A Symplekin; heat repeat, 90.3 11 0.00039 37.4 17.0 194 130-338 24-258 (386)
115 1juq_A ADP-ribosylation factor 90.0 0.79 2.7E-05 40.5 7.5 72 176-247 52-130 (171)
116 1x5b_A Signal transducing adap 89.9 0.87 3E-05 39.9 7.5 69 176-244 54-124 (163)
117 3g2s_A C-terminal fragment of 89.5 1.8 6.3E-05 37.3 9.2 72 176-247 50-128 (149)
118 3gjx_A Exportin-1; transport, 88.9 13 0.00043 41.9 17.9 108 128-246 25-142 (1073)
119 4hat_C Exportin-1; heat repeat 88.8 8 0.00027 43.2 16.1 110 126-246 11-130 (1023)
120 1lrv_A LRV, leucine-rich repea 88.6 0.18 6.3E-06 47.2 2.4 45 177-239 77-121 (244)
121 3qml_C Protein SLS1, nucleotid 88.6 3.8 0.00013 39.6 11.5 109 217-336 72-189 (315)
122 3m1i_C Exportin-1; heat repeat 88.0 12 0.0004 41.5 16.8 56 274-337 209-264 (1049)
123 4ffb_C Protein STU2; tubulin f 87.0 17 0.00058 33.4 15.0 145 179-336 14-168 (278)
124 1elk_A Target of MYB1; superhe 86.9 1.9 6.7E-05 37.4 7.8 68 176-243 55-128 (157)
125 1dvp_A HRS, hepatocyte growth 86.4 1.8 6.2E-05 39.5 7.7 69 176-244 44-114 (220)
126 3ldz_A STAM-1, signal transduc 86.4 2.3 7.7E-05 36.2 7.8 90 235-335 24-113 (140)
127 3zyq_A Hepatocyte growth facto 86.0 1.6 5.6E-05 40.1 7.2 70 176-245 47-118 (226)
128 1lrv_A LRV, leucine-rich repea 86.0 0.29 9.8E-06 45.8 2.0 21 177-197 101-121 (244)
129 3c2g_A SYS-1 protein; beta-cat 84.9 6.5 0.00022 39.2 11.0 184 151-336 261-473 (619)
130 2of3_A ZYG-9; multifunctional 84.7 4.4 0.00015 38.3 9.6 101 175-289 133-236 (266)
131 3ebb_A Phospholipase A2-activa 84.4 14 0.00048 35.4 13.2 148 130-282 146-299 (304)
132 3g2s_A C-terminal fragment of 84.0 2.7 9.3E-05 36.2 7.2 109 217-336 11-126 (149)
133 3a6p_A Exportin-5; exportin-5, 81.8 13 0.00044 42.2 13.6 140 133-289 13-162 (1204)
134 1mhq_A ADP-ribosylation factor 81.6 3.4 0.00012 35.5 6.9 89 236-335 21-115 (148)
135 1juq_A ADP-ribosylation factor 79.8 3 0.0001 36.8 6.0 109 217-336 13-128 (171)
136 1x5b_A Signal transducing adap 79.1 3.9 0.00013 35.7 6.5 89 236-335 35-124 (163)
137 3zyq_A Hepatocyte growth facto 79.0 3.9 0.00013 37.6 6.8 110 216-336 7-118 (226)
138 3u0r_A Apoptosis inhibitor 5; 78.8 48 0.0016 34.0 15.2 98 221-338 34-131 (507)
139 2xpp_A IWS1, ECU08_0440; trans 77.6 8.8 0.0003 33.0 8.1 88 149-240 36-131 (145)
140 1elk_A Target of MYB1; superhe 69.6 24 0.00083 30.2 9.1 109 237-366 37-149 (157)
141 3ibv_A Exportin-T; karyopherin 68.4 39 0.0013 37.5 12.7 151 182-336 201-361 (980)
142 3gjx_A Exportin-1; transport, 63.8 72 0.0025 35.8 13.7 138 186-339 491-647 (1073)
143 3rru_A TOM1L1 protein; structu 63.1 15 0.00053 31.5 6.5 73 176-248 55-133 (152)
144 1dvp_A HRS, hepatocyte growth 59.2 15 0.00051 33.2 6.0 88 237-335 26-114 (220)
145 4atg_A TAF6; transcription, TF 57.1 1.1E+02 0.0037 27.4 12.2 92 148-244 61-161 (196)
146 3oc3_A Helicase MOT1, MOT1; re 53.0 32 0.0011 36.5 7.7 161 148-335 243-403 (800)
147 1upk_A MO25 protein; transfera 50.3 1.9E+02 0.0064 28.1 16.6 134 155-290 145-284 (341)
148 2xpp_A IWS1, ECU08_0440; trans 49.8 79 0.0027 26.9 8.7 81 205-289 50-136 (145)
149 1lsh_A Lipovitellin (LV-1N, LV 49.8 2.5E+02 0.0084 31.2 15.1 96 175-289 472-576 (1056)
150 3a6p_A Exportin-5; exportin-5, 45.8 2E+02 0.0068 32.4 13.6 131 186-336 25-162 (1204)
151 3pst_A Protein DOA1; protein d 45.3 2.5E+02 0.0085 28.1 13.0 128 150-289 243-389 (425)
152 3l9t_A Putative uncharacterize 44.2 1.9E+02 0.0067 26.6 13.3 118 148-289 86-207 (240)
153 3l3f_X Protein DOA1, DOA1/UFD3 42.0 2.6E+02 0.0087 27.3 12.5 128 150-289 180-326 (362)
154 3l9t_A Putative uncharacterize 42.0 2.1E+02 0.0072 26.4 14.4 132 181-340 78-211 (240)
155 3gae_A Protein DOA1; UFD3, CDC 42.0 2E+02 0.0068 26.3 10.9 164 104-289 34-217 (253)
156 1n4k_A Inositol 1,4,5-trisphos 40.3 2.2E+02 0.0075 27.8 11.5 111 131-248 228-380 (381)
157 1sz9_A PCF11 protein; RNA poly 36.6 1.5E+02 0.0053 24.8 8.4 90 186-287 23-112 (144)
158 3hjl_A Flagellar motor switch 35.8 1.1E+02 0.0037 29.6 8.2 73 198-270 121-210 (329)
159 3nfq_A Transcription factor IW 35.5 1.9E+02 0.0066 25.2 9.0 78 204-285 64-147 (170)
160 4flb_A Regulation of nuclear P 34.4 39 0.0013 27.7 4.2 62 176-247 10-71 (132)
161 1vsy_5 Proteasome activator BL 26.9 1E+02 0.0035 34.3 7.0 161 120-289 785-966 (997)
162 3oc3_A Helicase MOT1, MOT1; re 26.3 1.9E+02 0.0066 30.7 8.4 139 177-335 177-327 (800)
163 1vdy_A Hypothetical protein (R 25.4 93 0.0032 26.3 5.0 92 236-337 31-131 (140)
164 3rru_A TOM1L1 protein; structu 25.2 90 0.0031 26.6 5.0 92 236-337 36-131 (152)
165 3o2t_A Symplekin; heat repeat, 25.0 5E+02 0.017 25.5 12.4 113 216-335 63-182 (386)
166 3l3f_X Protein DOA1, DOA1/UFD3 24.9 4.9E+02 0.017 25.3 11.5 133 191-339 180-329 (362)
167 2rg8_A Programmed cell death p 22.8 3.5E+02 0.012 23.0 9.6 70 131-204 44-116 (165)
168 1vsy_5 Proteasome activator BL 22.6 6.2E+02 0.021 28.0 12.4 188 129-337 131-366 (997)
169 1et1_A Parathyroid hormone; he 22.5 44 0.0015 21.5 1.8 13 112-124 19-31 (34)
170 1bwx_A Parathyroid hormone; pe 22.4 43 0.0015 22.2 1.8 13 112-124 19-31 (39)
171 3trt_A Vimentin; cytoskeleton, 22.4 1.4E+02 0.0048 22.0 5.1 19 349-367 5-23 (77)
172 3vld_A DNA mismatch repair pro 21.4 3.9E+02 0.013 27.3 9.5 91 130-229 72-166 (500)
173 2ccq_A P97, peptide N-glycanas 21.0 88 0.003 24.7 3.8 27 178-204 5-31 (99)
No 1
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=100.00 E-value=3.1e-39 Score=316.12 Aligned_cols=252 Identities=24% Similarity=0.296 Sum_probs=213.0
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHhhcC----------CCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHH-hc
Q 015709 115 MEIKELMEKLKTPSDAQLIQIAIDDLNNS----------TLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVG-QL 183 (402)
Q Consensus 115 ~~L~ea~~~l~~~~d~~lMk~al~~L~~~----------~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~-lL 183 (402)
.||.++|+ ++||++++||+++.+|.++ +.+.++|+.|++.|.++++++||+++|++.||+++|+. +|
T Consensus 14 ~~~~~~~~--~~~d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL 91 (296)
T 1xqr_A 14 VPRGSHMR--GQRGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYL 91 (296)
T ss_dssp ------CC--SCHHHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTT
T ss_pred HHHHHHHc--CCCCHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHH
Confidence 57777775 4599999999999999997 45668999999999999999999999999999999999 99
Q ss_pred CCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHH
Q 015709 184 NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS-FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLM 262 (402)
Q Consensus 184 ~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~-~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~ 262 (402)
+++++++|..|+|+||++++|||.+|+.+++.|++|+|+++|+++ +..++.+|+|||||++|+++++++.|.++||++.
T Consensus 92 ~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~ 171 (296)
T 1xqr_A 92 EAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSV 171 (296)
T ss_dssp TCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHH
Confidence 999999999999999999999999999999999999999999965 6889999999999999999999999999999999
Q ss_pred HHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChhhH
Q 015709 263 LQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEA 342 (402)
Q Consensus 263 L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~~ 342 (402)
|+.+|+++ +.++|++|+|+|++|+.. +++.+..+++.|+++.|+.+|.++|++++++++.+|.+|+...+...
T Consensus 172 L~~lL~~~--d~~v~~~A~~aLs~L~~~-----~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~ 244 (296)
T 1xqr_A 172 LMRAMQQQ--VQKLKVKSAFLLQNLLVG-----HPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGV 244 (296)
T ss_dssp HHHHHHSS--CHHHHHHHHHHHHHHHHH-----CGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCC--CHHHHHHHHHHHHHHHhC-----ChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHH
Confidence 99999986 789999999999999963 57788999999999999999999999999999999999998854333
Q ss_pred HHHHhcCCc-HHHHHHHHHHhHHhhh---hhhHhhhHHHH
Q 015709 343 LVLKDFCGL-DTALERLRQQLQEVML---EEDQRDYAMDV 378 (402)
Q Consensus 343 ~~~~~~~GL-~~~L~~L~~~~~~l~~---~e~~~~y~~~l 378 (402)
..++ .. ......|++.++.+.. .+|..+|+..+
T Consensus 245 ~~~~---~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~i 281 (296)
T 1xqr_A 245 RECR---EPELGLEELLRHRCQLLQQHEEYQEELEFCEKL 281 (296)
T ss_dssp HHHH---CGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred HHHh---ccHHHHHHHHHHHHHHccchHHHHHHHHHHHHH
Confidence 3222 22 1234444445555441 34455666555
No 2
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.90 E-value=3.3e-22 Score=184.39 Aligned_cols=217 Identities=18% Similarity=0.230 Sum_probs=191.0
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCC-chhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHH
Q 015709 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPID-NANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ 211 (402)
Q Consensus 133 Mk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iD-nA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~ 211 (402)
+..+++.+.+++ ++.+..|+..|..+....+ +...+.+.|++++|+.+|+++++++|..|+++|++++.+++..+..
T Consensus 4 i~~L~~~L~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 4 VEKLVKLLTSTD--SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp HHHHHHHTTCSC--HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHcCCC--HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 456677777654 7889999999999987664 8889999999999999999999999999999999999999999999
Q ss_pred HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcc
Q 015709 212 VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ 291 (402)
Q Consensus 212 ~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~ 291 (402)
+.+.|+++.|+.+++++++.++..|+++|++++.+++.....+.+.|+++.|+.+++++ +..++..|+++|.+|+..
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~--~~~~~~~a~~~L~~l~~~- 158 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST--DSEVQKEAARALANIASG- 158 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTS-
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHcC-
Confidence 99999999999999998999999999999999999999999999999999999999986 678999999999999852
Q ss_pred cccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCcHHHHHHH
Q 015709 292 LENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERL 358 (402)
Q Consensus 292 l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~~~L~~L 358 (402)
++.....+.+.|+++.|+.+|.++++.+++.++.+|.+|+...+..++.+.+.+++...++.|
T Consensus 159 ----~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll 221 (252)
T 4hxt_A 159 ----PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLL 221 (252)
T ss_dssp ----CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGG
T ss_pred ----CHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH
Confidence 445567888999999999999999999999999999999987666666676455454444443
No 3
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.89 E-value=4.9e-22 Score=180.17 Aligned_cols=192 Identities=18% Similarity=0.263 Sum_probs=174.5
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHcc-CCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHH
Q 015709 136 AIDDLNNSTLSLEDSQRALQELLILV-EPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLE 214 (402)
Q Consensus 136 al~~L~~~~~t~e~k~~AL~~L~~Lv-e~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le 214 (402)
....+.+. +++.+..|+..|.++. .+.++...+.+.|+++.|+.+|+++++.+|..|+++|++++.+++..+..+++
T Consensus 17 l~~LL~s~--~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 94 (210)
T 4db6_A 17 MVQQLNSP--DQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 94 (210)
T ss_dssp HHHHTTCS--CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHhcCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 33444443 5788999999999998 55677788999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhccccc
Q 015709 215 LGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLEN 294 (402)
Q Consensus 215 ~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~ 294 (402)
.|++|.|+.+++++++.++..|+++|++++.+++...+.+++.|+++.|+.+|+++ +..++..|+++|.+|+..
T Consensus 95 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~---- 168 (210)
T 4db6_A 95 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASG---- 168 (210)
T ss_dssp TTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTS----
T ss_pred CCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC--CHHHHHHHHHHHHHHHcC----
Confidence 99999999999999999999999999999999998888999999999999999986 678999999999999953
Q ss_pred CCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhc
Q 015709 295 MHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 336 (402)
Q Consensus 295 ~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~ 336 (402)
++..+..+.+.|+++.|++++.+++.++++.|+.+|.+|+.
T Consensus 169 -~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 169 -GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp -CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred -CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 45677888999999999999999999999999999999874
No 4
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.88 E-value=1.2e-21 Score=182.29 Aligned_cols=205 Identities=17% Similarity=0.225 Sum_probs=177.4
Q ss_pred HHHHHHHHHHHHHcc-CCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhh
Q 015709 147 LEDSQRALQELLILV-EPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV 225 (402)
Q Consensus 147 ~e~k~~AL~~L~~Lv-e~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL 225 (402)
++.+..|+..|..++ .+.++...+.+.|++++|+.+|+++++++|..|+++|++++.+++..+..+++.|++|.|+.++
T Consensus 26 ~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL 105 (252)
T 4db8_A 26 MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL 105 (252)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHH
Confidence 467778888885544 3455677899999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHh
Q 015709 226 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD 305 (402)
Q Consensus 226 ~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~ 305 (402)
+++++.++..|+++|+++..+.+.....+.+.||++.|+.+|+++ +..++..|+++|.+|+.. ++.....+.+
T Consensus 106 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~-----~~~~~~~~~~ 178 (252)
T 4db8_A 106 SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASG-----GNEQIQAVID 178 (252)
T ss_dssp GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS--CHHHHHHHHHHHHHHTTS-----CHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHcC-----ChHHHHHHHH
Confidence 999999999999999999998777668899999999999999986 678999999999999852 4566777889
Q ss_pred CCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCcHHHHHHH
Q 015709 306 RFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERL 358 (402)
Q Consensus 306 ~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~~~L~~L 358 (402)
.|+++.|+.+|.++++.+++.++.+|.+|+...+..+..+.+.+++...+..|
T Consensus 179 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll 231 (252)
T 4db8_A 179 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQ 231 (252)
T ss_dssp TTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTT
T ss_pred CCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHh
Confidence 99999999999999999999999999999987766666666455554444443
No 5
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.87 E-value=5.4e-21 Score=173.29 Aligned_cols=181 Identities=18% Similarity=0.182 Sum_probs=159.2
Q ss_pred HhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhc
Q 015709 171 SKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG 250 (402)
Q Consensus 171 ~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~ 250 (402)
..-|+.++|+.+|+++++++|..|+++|++++.+++..+..+++.|++|.|+.+|+++++.++..|+++|++++.+++..
T Consensus 9 ~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 88 (210)
T 4db6_A 9 HHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88 (210)
T ss_dssp ----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred cccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHH
Q 015709 251 QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAA 330 (402)
Q Consensus 251 ~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~a 330 (402)
...+++.||++.|+.+|+++ +..++..|+++|.+|+.. ++.....+.+.|+++.|+++|.+++.++++.++.+
T Consensus 89 ~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~-----~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~a 161 (210)
T 4db6_A 89 IQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASG-----GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWA 161 (210)
T ss_dssp HHHHHHTTCHHHHHHHTTCS--CHHHHHHHHHHHHHHTTS-----CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHcCC--cHHHHHHHHHHHHHHHcC-----CHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHH
Confidence 99999999999999999986 678999999999999852 45666778899999999999999999999999999
Q ss_pred HHHHhcCChhhHHHHHhcCCcHHHHHHH
Q 015709 331 IKNLLQLRTTEALVLKDFCGLDTALERL 358 (402)
Q Consensus 331 L~~L~~~~~~~~~~~~~~~GL~~~L~~L 358 (402)
|.+|+...+..+..+.+.+++..++..|
T Consensus 162 L~~l~~~~~~~~~~~~~~g~i~~L~~ll 189 (210)
T 4db6_A 162 LSNIASGGNEQKQAVKEAGALEKLEQLQ 189 (210)
T ss_dssp HHHHHTSCHHHHHHHHHTTHHHHHHHGG
T ss_pred HHHHHcCCcHHHHHHHHCCCHHHHHHHH
Confidence 9999998777777776444444444433
No 6
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.86 E-value=2.9e-20 Score=171.38 Aligned_cols=199 Identities=17% Similarity=0.207 Sum_probs=181.1
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHccCC-CCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHH
Q 015709 132 LIQIAIDDLNNSTLSLEDSQRALQELLILVEP-IDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK 210 (402)
Q Consensus 132 lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~-iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~ 210 (402)
.+..++..+.++ +.+.+..|+..|..+... .++...+.+.|+++.|+.+|+++++++|..|+++|++++..++..+.
T Consensus 45 ~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 122 (252)
T 4hxt_A 45 GVEVLVKLLTST--DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 122 (252)
T ss_dssp HHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CHHHHHHHHhCC--CHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 456667777765 478899999999999987 67888899999999999999999999999999999999999999999
Q ss_pred HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015709 211 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (402)
Q Consensus 211 ~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~ 290 (402)
.+.+.|+++.|+++++++++.++..|+++|++++.+++...+.+.+.|+++.|+.++.++ +..++..|+++|.+|+.
T Consensus 123 ~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~- 199 (252)
T 4hxt_A 123 AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST--DSEVQKEAARALANIAS- 199 (252)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTT-
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCC--CHHHHHHHHHHHHHHHc-
Confidence 999999999999999999999999999999999999888888999999999999999976 67899999999999985
Q ss_pred ccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCCh
Q 015709 291 QLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT 339 (402)
Q Consensus 291 ~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~ 339 (402)
.++.....+.+.|+++.|++++.++++++++.|+.+|.+|.....
T Consensus 200 ----~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 200 ----GPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGW 244 (252)
T ss_dssp ----SBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCB
T ss_pred ----CCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCC
Confidence 245677788899999999999999999999999999999997753
No 7
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.86 E-value=1.4e-20 Score=175.01 Aligned_cols=196 Identities=17% Similarity=0.222 Sum_probs=177.4
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHccC-CCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHH
Q 015709 132 LIQIAIDDLNNSTLSLEDSQRALQELLILVE-PIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK 210 (402)
Q Consensus 132 lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve-~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~ 210 (402)
.+..++..+.+++ ++.+..|+..|.++.. +.++...+.+.|++++|+.+|+++++.+|..|+++|++++.+++..+.
T Consensus 55 ~i~~L~~lL~~~~--~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 132 (252)
T 4db8_A 55 ALPALVQLLSSPN--EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 132 (252)
T ss_dssp HHHHHHHGGGCSC--HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cHHHHHHHHcCCC--HHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHH
Confidence 4566777787764 7889999999999997 567888999999999999999999999999999999999998887668
Q ss_pred HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015709 211 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (402)
Q Consensus 211 ~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~ 290 (402)
.+.+.|++|.|++++++++..++..|+++|++++.+++.....+.+.|+++.|+.+|.++ +..++..|+++|.+|+.
T Consensus 133 ~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~- 209 (252)
T 4db8_A 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIAS- 209 (252)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCS--SHHHHHHHHHHHHHHTT-
T ss_pred HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCC--CHHHHHHHHHHHHHHhc-
Confidence 899999999999999999999999999999999999988889999999999999999986 67899999999999984
Q ss_pred ccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhc
Q 015709 291 QLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 336 (402)
Q Consensus 291 ~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~ 336 (402)
.++..+..+.+.|+++.|+.++.++++++++.|+.+|.+|+.
T Consensus 210 ----~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 210 ----GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp ----SCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred ----CCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 355677788999999999999999999999999999999864
No 8
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.85 E-value=2.8e-20 Score=186.02 Aligned_cols=212 Identities=16% Similarity=0.160 Sum_probs=177.1
Q ss_pred HHHHHHHHHHHHHccCCCC-chhHHHhcCC-HHHHHHhcCCCCHHHHHHHHHHHHHHhcC-ChHhHHHHHHcCcHHHHHH
Q 015709 147 LEDSQRALQELLILVEPID-NANDLSKLGG-LSVLVGQLNHPDTDIRKISAWILGKASQN-NPLVQKQVLELGALSKLMK 223 (402)
Q Consensus 147 ~e~k~~AL~~L~~Lve~iD-nA~~l~~lGg-l~~Li~lL~s~~~~Ir~~Aa~vLg~~aqN-Np~~Q~~~le~g~L~~Ll~ 223 (402)
++-+..|...|.+++..-+ +...+...|| +|+|+.+|.++++++|..|+|+|++++.+ |+.++..+.+.|++|+|++
T Consensus 98 ~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~ 177 (354)
T 3nmw_A 98 ITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALME 177 (354)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHH
Confidence 4668899999999987665 5555666777 99999999999999999999999999986 7889999999999999999
Q ss_pred hh-cCCCHHHHHHHHHHHHHHhcCChhcHHHHH-hcCcHHHHHHhhcCCCcc--HHHHHHHHHHHHHHhhcccccCCCCc
Q 015709 224 MV-KSSFVEEAVKALYTVSSLIRNNLAGQEMFY-VEAGDLMLQDILGNSSFE--IRLHRKAVSLVGDLAKCQLENMHKVE 299 (402)
Q Consensus 224 LL-~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~-~~gGi~~L~~lL~s~~~d--~klq~kA~~lL~~L~~~~l~~~~~~~ 299 (402)
+| ++.+..++..|+.||.++..+++.++..+. ..||++.|+.+|.+++.. ..++..|+++|.+|+... ..+++.
T Consensus 178 lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~--a~~~~~ 255 (354)
T 3nmw_A 178 CALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLI--ATNEDH 255 (354)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHH--TTCHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhc--cCCHHH
Confidence 74 566788899999999999887777777887 799999999999876321 258999999999998410 024577
Q ss_pred chhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCcHHHHHHHHH
Q 015709 300 PPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQ 360 (402)
Q Consensus 300 ~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~~~L~~L~~ 360 (402)
+..+.+.|+++.|+++|.+++..+++.|+.+|.+|+...++.++.+.+.+++.++++.|++
T Consensus 256 ~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s 316 (354)
T 3nmw_A 256 RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHS 316 (354)
T ss_dssp HHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTC
T ss_pred HHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhC
Confidence 8889999999999999999999999999999999997666677777756666666665543
No 9
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.85 E-value=1.8e-19 Score=187.08 Aligned_cols=220 Identities=16% Similarity=0.194 Sum_probs=184.4
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCc--hhHHHhcCCHHHHHHhcC-CCCHHHHHHHHHHHHHHhcCChHhH
Q 015709 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDN--ANDLSKLGGLSVLVGQLN-HPDTDIRKISAWILGKASQNNPLVQ 209 (402)
Q Consensus 133 Mk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDn--A~~l~~lGgl~~Li~lL~-s~~~~Ir~~Aa~vLg~~aqNNp~~Q 209 (402)
+.+.++.+.+. +++.+..|...+..++..-.| -+.+++.|++|+|+++|+ ++++.+|..|+|+|++++..++..+
T Consensus 59 i~~~v~~l~s~--d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~ 136 (510)
T 3ul1_B 59 VEDIVKGINSN--NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 136 (510)
T ss_dssp HHHHHHHHTSS--CHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 55566666654 578899999999988754444 578999999999999996 4679999999999999999999999
Q ss_pred HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCC---ccHHHHHHHHHHHHH
Q 015709 210 KQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSS---FEIRLHRKAVSLVGD 286 (402)
Q Consensus 210 ~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~---~d~klq~kA~~lL~~ 286 (402)
..+++.|++|.|+++|++++..++..|+|||++++.+++..+..+.+.||++.|+.+|.++. ....+++.++|++++
T Consensus 137 ~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n 216 (510)
T 3ul1_B 137 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 216 (510)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998753 234678899999999
Q ss_pred HhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCcHHHHHHHH
Q 015709 287 LAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLR 359 (402)
Q Consensus 287 L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~~~L~~L~ 359 (402)
++.+ ...........|+++.|+.+|.+++.+++..++.+|.+|+....+..+.+...+++..+++.|+
T Consensus 217 l~~~-----~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~ 284 (510)
T 3ul1_B 217 LCRN-----KNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG 284 (510)
T ss_dssp HHCC-----CSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHT
T ss_pred Hhhc-----ccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhc
Confidence 9964 2233334445789999999999999999999999999999987766666664555555555554
No 10
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.83 E-value=2.2e-19 Score=186.96 Aligned_cols=208 Identities=14% Similarity=0.168 Sum_probs=181.6
Q ss_pred CHHHHHHHHHHHHHccCCCC-chhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHh
Q 015709 146 SLEDSQRALQELLILVEPID-NANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 224 (402)
Q Consensus 146 t~e~k~~AL~~L~~Lve~iD-nA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~L 224 (402)
+++.+..|+..|.++....+ +...+...|+++.|+.+|.++++.++..|+++|++++..++..+..+++.|+++.|+.+
T Consensus 264 ~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~L 343 (529)
T 3tpo_A 264 DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSL 343 (529)
T ss_dssp CHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHH
T ss_pred cHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHH
Confidence 56788899999999997664 44567789999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHH
Q 015709 225 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR 304 (402)
Q Consensus 225 L~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~ 304 (402)
++++++.++..|+|+|++++.+++.....+++.|+++.|+.+|.++ +..+|..|+|+|.+|+.. .+++....++
T Consensus 344 L~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~--~~~v~~~A~~aL~nl~~~----~~~~~~~~l~ 417 (529)
T 3tpo_A 344 LTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA--DFKTQKAAAWAITNYTSG----GTVEQIVYLV 417 (529)
T ss_dssp TTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS--CHHHHHHHHHHHHHHHHH----SCHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC--CHHHHHHHHHHHHHHHcC----CCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999986 678999999999999864 3556777899
Q ss_pred hCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCC------hhhHHHHHhcCCcHHHHHHHHH
Q 015709 305 DRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR------TTEALVLKDFCGLDTALERLRQ 360 (402)
Q Consensus 305 ~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~------~~~~~~~~~~~GL~~~L~~L~~ 360 (402)
+.|+++.|+++|.++|++++..++.+|.+++... +..+..+. .+|..+.++.|+.
T Consensus 418 ~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~ie-e~ggl~~ie~Lq~ 478 (529)
T 3tpo_A 418 HCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIE-ECGGLDKIEALQR 478 (529)
T ss_dssp HTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHH-HTTCHHHHTGGGG
T ss_pred HCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHH-HCCcHHHHHHHHc
Confidence 9999999999999999999999999999998532 11234566 5555556676654
No 11
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.83 E-value=2.8e-19 Score=169.17 Aligned_cols=181 Identities=14% Similarity=0.149 Sum_probs=156.2
Q ss_pred CHHHHHHhcCCCCH--HHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHH
Q 015709 175 GLSVLVGQLNHPDT--DIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQE 252 (402)
Q Consensus 175 gl~~Li~lL~s~~~--~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~ 252 (402)
.+++++++|.++++ +++..|++.|.+++.+|+..+..+.+.|+||+|+++|+++++.++..|+|||.++..+++.+..
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 58999999999888 9999999999999999999999999999999999999999999999999999999998899999
Q ss_pred HHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhc---------------
Q 015709 253 MFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA--------------- 317 (402)
Q Consensus 253 ~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~--------------- 317 (402)
.+.++||+++|+++|.+. .+..++..|+.+|.+|+. .+..+..+.+. .++.|++++.
T Consensus 89 ~I~~~GaI~~Lv~lL~~~-~~~~~~e~a~~aL~nLS~------~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~ 160 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQT-RDLETKKQITGLLWNLSS------NDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKAN 160 (233)
T ss_dssp HHHHTTHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHT------SGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCC
T ss_pred HHHHcCCHHHHHHHHccC-CCHHHHHHHHHHHHHHHc------ChhhHHHHHhc-cHHHHHHHHhccccCCccccccccc
Confidence 999999999999999842 256799999999999984 34566677764 6899988763
Q ss_pred -CCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCc-HHHHHHHHHHhH
Q 015709 318 -SADLDLQEKALAAIKNLLQLRTTEALVLKDFCGL-DTALERLRQQLQ 363 (402)
Q Consensus 318 -~~d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL-~~~L~~L~~~~~ 363 (402)
..++++++.|..+|.+|+...++.|+.+++.+|+ +.++..|+....
T Consensus 161 ~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~ 208 (233)
T 3tt9_A 161 GLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIA 208 (233)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhh
Confidence 1377999999999999999777789999977776 566666665443
No 12
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.83 E-value=1.1e-18 Score=181.60 Aligned_cols=220 Identities=16% Similarity=0.188 Sum_probs=183.7
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCC--chhHHHhcCCHHHHHHhcC-CCCHHHHHHHHHHHHHHhcCChHhH
Q 015709 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPID--NANDLSKLGGLSVLVGQLN-HPDTDIRKISAWILGKASQNNPLVQ 209 (402)
Q Consensus 133 Mk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iD--nA~~l~~lGgl~~Li~lL~-s~~~~Ir~~Aa~vLg~~aqNNp~~Q 209 (402)
+.+.++.+.+. +++.+..|+..+..++..-. ....+++.|++|+|+.+|. ++++.+|..|+|+|++++.+++..+
T Consensus 78 l~~lv~~l~s~--d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~ 155 (529)
T 3tpo_A 78 VEDIVKGINSN--NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 155 (529)
T ss_dssp HHHHHHHHTSS--CHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 45556666554 57888999999988774433 3578999999999999995 5679999999999999999999999
Q ss_pred HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCC---ccHHHHHHHHHHHHH
Q 015709 210 KQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSS---FEIRLHRKAVSLVGD 286 (402)
Q Consensus 210 ~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~---~d~klq~kA~~lL~~ 286 (402)
..+++.|++|.|+.++.+++..++..|+|||++|+.+++..+..++++||++.|+.+|.++. ....+++.++|++++
T Consensus 156 ~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n 235 (529)
T 3tpo_A 156 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 235 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998653 234678899999999
Q ss_pred HhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCcHHHHHHHH
Q 015709 287 LAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLR 359 (402)
Q Consensus 287 L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~~~L~~L~ 359 (402)
++.+ ...........|+++.|+.+|.+++++++..++.+|.+|+....+..+.+...+++..+++.|+
T Consensus 236 l~~~-----~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~ 303 (529)
T 3tpo_A 236 LCRN-----KNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG 303 (529)
T ss_dssp HHCC-----CTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHT
T ss_pred HHhc-----ccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhc
Confidence 9964 2233344455789999999999999999999999999999988766666664555555555554
No 13
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.82 E-value=1.9e-19 Score=185.76 Aligned_cols=212 Identities=16% Similarity=0.160 Sum_probs=176.3
Q ss_pred HHHHHHHHHHHHHccCCCC-chhHHHhcCC-HHHHHHhcCCCCHHHHHHHHHHHHHHhcC-ChHhHHHHHHcCcHHHHHH
Q 015709 147 LEDSQRALQELLILVEPID-NANDLSKLGG-LSVLVGQLNHPDTDIRKISAWILGKASQN-NPLVQKQVLELGALSKLMK 223 (402)
Q Consensus 147 ~e~k~~AL~~L~~Lve~iD-nA~~l~~lGg-l~~Li~lL~s~~~~Ir~~Aa~vLg~~aqN-Np~~Q~~~le~g~L~~Ll~ 223 (402)
++-+..|...|.+++..-+ +...+...|| +|+|+.+|.+++++++..|+|+|++++.+ ++.++..+.+.|++|+|++
T Consensus 214 ~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~ 293 (458)
T 3nmz_A 214 ITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALME 293 (458)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHH
Confidence 4567889999999987665 4445556677 99999999999999999999999999985 7889999999999999999
Q ss_pred hh-cCCCHHHHHHHHHHHHHHhcCChhcHHHHH-hcCcHHHHHHhhcCCCcc--HHHHHHHHHHHHHHhhcccccCCCCc
Q 015709 224 MV-KSSFVEEAVKALYTVSSLIRNNLAGQEMFY-VEAGDLMLQDILGNSSFE--IRLHRKAVSLVGDLAKCQLENMHKVE 299 (402)
Q Consensus 224 LL-~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~-~~gGi~~L~~lL~s~~~d--~klq~kA~~lL~~L~~~~l~~~~~~~ 299 (402)
+| ++.+..++..|+.||.+|..+++.++..+. ..||++.|+.+|.+++.. ..++..|+++|.+|+... ..+++.
T Consensus 294 lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~--a~~~~~ 371 (458)
T 3nmz_A 294 CALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLI--ATNEDH 371 (458)
T ss_dssp HHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHH--TTCHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcc--cCCHHH
Confidence 75 556788899999999999887777777887 799999999999976322 258999999999998410 025677
Q ss_pred chhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCcHHHHHHHHH
Q 015709 300 PPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQ 360 (402)
Q Consensus 300 ~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~~~L~~L~~ 360 (402)
+..+.+.|+++.|+.+|.+++.++++.|+.+|.+|+...++.++.+.+.|++.++++.|+.
T Consensus 372 ~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s 432 (458)
T 3nmz_A 372 RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHS 432 (458)
T ss_dssp HHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTC
T ss_pred HHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhC
Confidence 8889999999999999999999999999999999997666677777767777777666543
No 14
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.82 E-value=5.3e-19 Score=181.37 Aligned_cols=174 Identities=13% Similarity=0.110 Sum_probs=145.9
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchh-HHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHH
Q 015709 134 QIAIDDLNNSTLSLEDSQRALQELLILVEPIDNAN-DLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQV 212 (402)
Q Consensus 134 k~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~-~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~ 212 (402)
..++..|.++ +++.+..|...|..++..-++.+ .+.+.||+|+|+.+|++++++++..|+|+|++++..|+.++..+
T Consensus 5 ~~lv~~L~s~--~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 5 PKAVQYLSSQ--DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp HHHHHHHHSS--CTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHHHHCCC--CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 4456667665 45789999999999886665544 89999999999999999999999999999999999999999999
Q ss_pred HHcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhc--------CCC------ccHHHH
Q 015709 213 LELGALSKLMKMVK-SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILG--------NSS------FEIRLH 277 (402)
Q Consensus 213 le~g~L~~Ll~LL~-s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~--------s~~------~d~klq 277 (402)
++.|++|+|+++|+ +++++++..|+|+|+++..+ +.....+++ ||++.|+.+|. ++. .+..++
T Consensus 83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~ 160 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence 99999999999999 77889999999999999987 778888888 99999999993 221 246678
Q ss_pred HHHHHHHHHHhhcccccCCCCcchhHHhC-CcHHHHHHhhc
Q 015709 278 RKAVSLVGDLAKCQLENMHKVEPPLFRDR-FFLKSVVDLTA 317 (402)
Q Consensus 278 ~kA~~lL~~L~~~~l~~~~~~~~~~l~~~-g~v~~Lv~lL~ 317 (402)
+.|+|+|++|+. +++.+..+.+. |+++.|+.+|.
T Consensus 161 ~~a~~aL~nLs~------~~~~~~~i~~~~g~i~~Lv~lL~ 195 (457)
T 1xm9_A 161 FNATGCLRNLSS------ADAGRQTMRNYSGLIDSLMAYVQ 195 (457)
T ss_dssp HHHHHHHHHHTT------SHHHHHHHTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcc------CHHHHHHHHHcCCCHHHHHHHHH
Confidence 899999999985 24566666665 77777776664
No 15
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.82 E-value=3.8e-19 Score=184.62 Aligned_cols=208 Identities=14% Similarity=0.171 Sum_probs=182.0
Q ss_pred CHHHHHHHHHHHHHccCCCCc-hhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHh
Q 015709 146 SLEDSQRALQELLILVEPIDN-ANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 224 (402)
Q Consensus 146 t~e~k~~AL~~L~~Lve~iDn-A~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~L 224 (402)
+.+.+..|+..|.++....++ ...+...|+++.|+.+|.++++.++..|+++|++++..++..+..+++.|+++.|+.+
T Consensus 245 ~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~L 324 (510)
T 3ul1_B 245 DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSL 324 (510)
T ss_dssp CHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-C
T ss_pred CHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHH
Confidence 567888999999999986654 4567789999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHH
Q 015709 225 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR 304 (402)
Q Consensus 225 L~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~ 304 (402)
++++++.++..|+|+|++++.+++.....+++.|+++.|+.+|+++ +.++|..|+|+|.+|+.. .+++.+..+.
T Consensus 325 L~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~--~~~v~~~Aa~aL~Nl~~~----~~~~~~~~L~ 398 (510)
T 3ul1_B 325 LTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA--DFKTQKEAAWAITNYTSG----GTVEQIVYLV 398 (510)
T ss_dssp TTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS--CHHHHHHHHHHHHHHHHH----CCHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHcc----CCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999986 678999999999999864 3556777899
Q ss_pred hCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCCh------hhHHHHHhcCCcHHHHHHHHH
Q 015709 305 DRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT------TEALVLKDFCGLDTALERLRQ 360 (402)
Q Consensus 305 ~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~------~~~~~~~~~~GL~~~L~~L~~ 360 (402)
+.|+++.|+++|.++|++++..++.+|.+++...+ ..+..+. .+|..+.++.|+.
T Consensus 399 ~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~ie-e~ggl~~ie~Lq~ 459 (510)
T 3ul1_B 399 HCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIE-ECGGLDKIEALQR 459 (510)
T ss_dssp HTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHH-HTTHHHHHHHGGG
T ss_pred HCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHH-HcCcHHHHHHHHc
Confidence 99999999999999999999999999999986321 1234566 5666667777754
No 16
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.82 E-value=1.1e-19 Score=181.76 Aligned_cols=206 Identities=13% Similarity=0.112 Sum_probs=172.8
Q ss_pred HHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCC-----------CCHHHHHHHHHHHHHHhcCChHhHHHHHHc-
Q 015709 148 EDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH-----------PDTDIRKISAWILGKASQNNPLVQKQVLEL- 215 (402)
Q Consensus 148 e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s-----------~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~- 215 (402)
+.+..|+..|.++.-+.++.+.+++.||+++|+.+|.+ .++++|..|+|+|.+++.+++..+..+...
T Consensus 47 ~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~ 126 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMK 126 (354)
T ss_dssp GTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence 45667788888888788889999999999999999942 357899999999999999998888888655
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcC-ChhcHHHHHhcCcHHHHHHhh-cCCCccHHHHHHHHHHHHHHhhcccc
Q 015709 216 GALSKLMKMVKSSFVEEAVKALYTVSSLIRN-NLAGQEMFYVEAGDLMLQDIL-GNSSFEIRLHRKAVSLVGDLAKCQLE 293 (402)
Q Consensus 216 g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~-~~~~~~~f~~~gGi~~L~~lL-~s~~~d~klq~kA~~lL~~L~~~~l~ 293 (402)
|+||.|+++|++++++++..|+|||+++..+ ++.+...+.+.||++.|+.+| +++ +..+++.|+.+|.+|+..
T Consensus 127 GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~--~~~~~~~A~~aL~nLs~~--- 201 (354)
T 3nmw_A 127 GCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK--KESTLKSVLSALWNLSAH--- 201 (354)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHTT---
T ss_pred CcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCC--CHHHHHHHHHHHHHHHcc---
Confidence 5599999999999999999999999999985 677889999999999999985 443 567899999999999842
Q ss_pred cCCCCcchhHH-hCCcHHHHHHhhcCCCh----HHHHHHHHHHHHHhc---CChhhHHHHHhcCCcHHHHHHHHH
Q 015709 294 NMHKVEPPLFR-DRFFLKSVVDLTASADL----DLQEKALAAIKNLLQ---LRTTEALVLKDFCGLDTALERLRQ 360 (402)
Q Consensus 294 ~~~~~~~~~l~-~~g~v~~Lv~lL~~~d~----dv~E~aL~aL~~L~~---~~~~~~~~~~~~~GL~~~L~~L~~ 360 (402)
..+.+..+. ..|.++.|+++|.+++. ++++.++.+|.+|+. ..++.++.+.+.+++.+++..|++
T Consensus 202 --~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~ 274 (354)
T 3nmw_A 202 --CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKS 274 (354)
T ss_dssp --CHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTC
T ss_pred --ChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcC
Confidence 234455666 79999999999987754 599999999999996 455678888867777788777764
No 17
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.80 E-value=1.3e-17 Score=172.02 Aligned_cols=219 Identities=16% Similarity=0.177 Sum_probs=186.1
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHccCCC--CchhHHHhcCCHHHHHHhcCCCC-HHHHHHHHHHHHHHhcCChHhH
Q 015709 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPI--DNANDLSKLGGLSVLVGQLNHPD-TDIRKISAWILGKASQNNPLVQ 209 (402)
Q Consensus 133 Mk~al~~L~~~~~t~e~k~~AL~~L~~Lve~i--DnA~~l~~lGgl~~Li~lL~s~~-~~Ir~~Aa~vLg~~aqNNp~~Q 209 (402)
+..+++.|.++ +++.+..|+..|..++... ++...+...|+++.|+.+|.+++ +.+|..|+|+|++++..++..+
T Consensus 76 l~~lv~~L~s~--~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 76 LPAMIGGVYSD--DNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp HHHHHHHHTSS--CHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHcCC--CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 56667777654 5788999999998886543 56788999999999999998876 9999999999999999999999
Q ss_pred HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015709 210 KQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (402)
Q Consensus 210 ~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~ 289 (402)
..+++.|++|.|+.++.++++.++..|+|+|++++.+++.....+...|+++.|+.+|... .+..++..|+|+|.+|+.
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~-~~~~v~~~a~~~L~~L~~ 232 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEH-TKLSMLRNATWTLSNFCR 232 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTT-CCHHHHHHHHHHHHHHHC
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcC-CCHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999898899999999999999999543 367899999999999995
Q ss_pred cccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCcHHHHHHHHH
Q 015709 290 CQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQ 360 (402)
Q Consensus 290 ~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~~~L~~L~~ 360 (402)
. . .........|+++.|+.+|.+++.+++..++.+|.+|+.......+.+...+++..++..|+.
T Consensus 233 ~-----~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~ 297 (528)
T 4b8j_A 233 G-----K-PQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH 297 (528)
T ss_dssp S-----S-SCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTC
T ss_pred C-----C-CCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcC
Confidence 3 2 223344568999999999999999999999999999998876555556545666666665543
No 18
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.80 E-value=2.3e-18 Score=177.63 Aligned_cols=218 Identities=15% Similarity=0.147 Sum_probs=185.1
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCch-hHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHH
Q 015709 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNA-NDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ 211 (402)
Q Consensus 133 Mk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA-~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~ 211 (402)
+..++..+.+. +.+.+..|+..|.+++...++. ..+...|+++.|+.+|.++++.++..|+++|++++.+++..++.
T Consensus 246 l~~L~~lL~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 323 (528)
T 4b8j_A 246 LPALARLIHSN--DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQC 323 (528)
T ss_dssp HHHHHHHTTCC--CHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHCCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHH
Confidence 33444444433 5678889999999999776543 57888999999999999999999999999999999999999999
Q ss_pred HHHcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015709 212 VLELGALSKLMKMVKSS-FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (402)
Q Consensus 212 ~le~g~L~~Ll~LL~s~-~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~ 290 (402)
+++.|++|.|+.+|.++ ++.++..|+|+|++++.+++.....++..|+++.|+.+|.++ +..++..|+++|.+|+..
T Consensus 324 ~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 324 IIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTA--EFDIKKEAAWAISNATSG 401 (528)
T ss_dssp HHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS--CHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC--CHHHHHHHHHHHHHHHcC
Confidence 99999999999999998 899999999999999999888888999999999999999976 678999999999999963
Q ss_pred ccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChh-----------hHHHHHhcCCcHHHHHHHH
Q 015709 291 QLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTT-----------EALVLKDFCGLDTALERLR 359 (402)
Q Consensus 291 ~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~-----------~~~~~~~~~GL~~~L~~L~ 359 (402)
.++.....+.+.|+++.|+.+|..+|++++..++.+|.+|+...+. ....+. .+|..+.++.|+
T Consensus 402 ----~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~l~~L~ 476 (528)
T 4b8j_A 402 ----GSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMID-EAEGLEKIENLQ 476 (528)
T ss_dssp ----SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHH-HTTHHHHHHHGG
T ss_pred ----CCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHH-HCCcHHHHHHHH
Confidence 3467778888999999999999999999999999999999875432 244556 445444555554
No 19
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.79 E-value=7.9e-18 Score=168.21 Aligned_cols=198 Identities=19% Similarity=0.162 Sum_probs=172.9
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHccCCC-CchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHH
Q 015709 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPI-DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ 211 (402)
Q Consensus 133 Mk~al~~L~~~~~t~e~k~~AL~~L~~Lve~i-DnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~ 211 (402)
+..++..+.+. +.+.+..++..|.+++... ++...+...|++++|+.+|.++++.+|..|+++|++++.+++...+.
T Consensus 194 l~~L~~~l~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 271 (450)
T 2jdq_A 194 LNVLSWLLFVS--DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQV 271 (450)
T ss_dssp HHHHHHHTTCC--CHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHccC--CHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHH
Confidence 33444444432 4677888999999998754 56677888999999999999999999999999999999999988888
Q ss_pred HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcc
Q 015709 212 VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ 291 (402)
Q Consensus 212 ~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~ 291 (402)
+++.|+++.|+.+++++++.++..|+++|++++.+++...+.+++.|+++.|+.+|.++ +.++|..|+++|.+|+..
T Consensus 272 ~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~--~~~v~~~a~~~L~~l~~~- 348 (450)
T 2jdq_A 272 ILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTA--EFRTRKEAAWAITNATSG- 348 (450)
T ss_dssp HHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHH-
T ss_pred HHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC--CHHHHHHHHHHHHHHHcC-
Confidence 99999999999999998899999999999999999988888899999999999999975 678999999999999863
Q ss_pred cccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCC
Q 015709 292 LENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 338 (402)
Q Consensus 292 l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~ 338 (402)
.++.....+.+.|+++.|+++|..++.++++.++.+|.+++...
T Consensus 349 ---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 392 (450)
T 2jdq_A 349 ---GSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLG 392 (450)
T ss_dssp ---CCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 23455667778999999999999999999999999999998754
No 20
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.78 E-value=3.3e-18 Score=176.51 Aligned_cols=197 Identities=14% Similarity=0.067 Sum_probs=170.8
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHccCC--CCchhHHHhcCCHHHHHHhc-CCCCHHHHHHHHHHHHHHhcCChHhHH
Q 015709 134 QIAIDDLNNSTLSLEDSQRALQELLILVEP--IDNANDLSKLGGLSVLVGQL-NHPDTDIRKISAWILGKASQNNPLVQK 210 (402)
Q Consensus 134 k~al~~L~~~~~t~e~k~~AL~~L~~Lve~--iDnA~~l~~lGgl~~Li~lL-~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~ 210 (402)
..++..|.++ +.+.+..|...|.++... .+|...+.+.||+++|+.+| .+++++++..|+.+|++++..++..+.
T Consensus 246 p~LV~LL~s~--~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~ 323 (458)
T 3nmz_A 246 RALVAQLKSE--SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKA 323 (458)
T ss_dssp HHHHHGGGCS--CHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHhCC--CHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence 3444555543 578899999999998864 45777899999999999975 678899999999999999987788888
Q ss_pred HHH-HcCcHHHHHHhhcCCCH----HHHHHHHHHHHHHhc---CChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHH
Q 015709 211 QVL-ELGALSKLMKMVKSSFV----EEAVKALYTVSSLIR---NNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVS 282 (402)
Q Consensus 211 ~~l-e~g~L~~Ll~LL~s~~~----~vr~kAl~ALS~LiR---~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~ 282 (402)
.+. ..|++|.|+++|.+.++ +++..|+++|+++.. +++.+.+.++++||++.|+.+|+++ +..++..|++
T Consensus 324 ~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~--~~~v~~~A~~ 401 (458)
T 3nmz_A 324 DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH--SLTIVSNACG 401 (458)
T ss_dssp HHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCS--CHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCC--ChHHHHHHHH
Confidence 887 78999999999997654 488999999999986 6888999999999999999999986 5779999999
Q ss_pred HHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCCh
Q 015709 283 LVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT 339 (402)
Q Consensus 283 lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~ 339 (402)
+|++|+. .+++.+..+.+.|+++.|+++|.+++..+++.|+.+|.+|+...+
T Consensus 402 aL~nLa~-----~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 402 TLWNLSA-----RNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp HHHHHHS-----SCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHc-----CCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 9999984 356788899999999999999999999999999999999998753
No 21
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.78 E-value=5.5e-18 Score=173.83 Aligned_cols=177 Identities=14% Similarity=0.178 Sum_probs=156.1
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHH
Q 015709 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF 254 (402)
Q Consensus 175 gl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f 254 (402)
.+|.|+.+|+++++++|..|+++|++++.+++.++..+.+.|++|.|+++|+++++.++..|++||.++..+++++...+
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred HhcCcHHHHHHhhc-CCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhh--------cCC------
Q 015709 255 YVEAGDLMLQDILG-NSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLT--------ASA------ 319 (402)
Q Consensus 255 ~~~gGi~~L~~lL~-s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL--------~~~------ 319 (402)
+++||++.|+++|. ++ +..++..|+|+|.+|+. +++.+..+.+ |+++.|+++| .++
T Consensus 83 ~~~G~i~~Lv~lL~~~~--~~~~~~~a~~aL~nLa~------~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e 153 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTG--NAEIQKQLTGLLWNLSS------TDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSRE 153 (457)
T ss_dssp HHTTCHHHHHHHHTTCC--CHHHHHHHHHHHHHHHT------SSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------
T ss_pred HHcCCHHHHHHHHhhCC--CHHHHHHHHHHHHHHhc------CHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcc
Confidence 99999999999999 54 67899999999999994 3677888888 9999999999 332
Q ss_pred --ChHHHHHHHHHHHHHhcCChhhHHHHHhc-CCcHHHHHHHHHH
Q 015709 320 --DLDLQEKALAAIKNLLQLRTTEALVLKDF-CGLDTALERLRQQ 361 (402)
Q Consensus 320 --d~dv~E~aL~aL~~L~~~~~~~~~~~~~~-~GL~~~L~~L~~~ 361 (402)
+.+++..|+.+|.+|+.. ++.++.+.+. +++.+++..|+..
T Consensus 154 ~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~ 197 (457)
T 1xm9_A 154 VVDPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNC 197 (457)
T ss_dssp CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhh
Confidence 456667999999999988 5688888855 6677777777654
No 22
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.78 E-value=4.7e-17 Score=168.34 Aligned_cols=218 Identities=15% Similarity=0.144 Sum_probs=183.7
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHccCCC--CchhHHHhcCCHHHHHHhcCCC-CHHHHHHHHHHHHHHhcCChHhH
Q 015709 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPI--DNANDLSKLGGLSVLVGQLNHP-DTDIRKISAWILGKASQNNPLVQ 209 (402)
Q Consensus 133 Mk~al~~L~~~~~t~e~k~~AL~~L~~Lve~i--DnA~~l~~lGgl~~Li~lL~s~-~~~Ir~~Aa~vLg~~aqNNp~~Q 209 (402)
+..+++.|.+. +++.+..|+..|..++... .+...+...|+++.|+.+|.++ ++.+|..|+|+|++++..++..+
T Consensus 89 i~~lv~~L~s~--~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~ 166 (530)
T 1wa5_B 89 LPQMTQQLNSD--DMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT 166 (530)
T ss_dssp HHHHHHHHSCS--SHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHcCC--CHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 44555666554 5788999999999987643 4556788999999999999987 89999999999999999999999
Q ss_pred HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015709 210 KQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (402)
Q Consensus 210 ~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~ 289 (402)
..+++.|++|.|+.+|+++++.++..|+|+|++++.+++.....+...|+++.|+.+|.++ +..++..|+++|.+|+.
T Consensus 167 ~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~v~~~a~~~L~~L~~ 244 (530)
T 1wa5_B 167 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN--KPSLIRTATWTLSNLCR 244 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSC--CHHHHHHHHHHHHHHHC
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccC--CHHHHHHHHHHHHHHhC
Confidence 9999999999999999998999999999999999999888899999999999999999984 67899999999999995
Q ss_pred cccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCcHHHHHHHH
Q 015709 290 CQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLR 359 (402)
Q Consensus 290 ~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~~~L~~L~ 359 (402)
. ...........++++.|+.+|.++|..++..++.+|.+|+...+...+.+.+.+++..++..|+
T Consensus 245 ~-----~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~ 309 (530)
T 1wa5_B 245 G-----KKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLS 309 (530)
T ss_dssp C-----SSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGG
T ss_pred C-----CCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHC
Confidence 3 2133345566899999999999999999999999999999876555555554555555555553
No 23
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.77 E-value=6.3e-18 Score=159.85 Aligned_cols=197 Identities=13% Similarity=0.135 Sum_probs=160.1
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHcc-CCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHH
Q 015709 133 IQIAIDDLNNSTLSLEDSQRALQELLILV-EPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ 211 (402)
Q Consensus 133 Mk~al~~L~~~~~t~e~k~~AL~~L~~Lv-e~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~ 211 (402)
+..+++.|..++...+.+..|...|..++ .+.++...+...||+|+|+++|+++++++|..|+|+|++++..|++++..
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~ 89 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLE 89 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 34456667666544466778888888877 45668888999999999999999999999999999999999999999999
Q ss_pred HHHcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcC--------------CCccHHH
Q 015709 212 VLELGALSKLMKMVK-SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGN--------------SSFEIRL 276 (402)
Q Consensus 212 ~le~g~L~~Ll~LL~-s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s--------------~~~d~kl 276 (402)
+.+.|+||+|+++|+ +.+.+++..|..+|-+|.. ++.+...+.+ +|+++|++++.. ...+..+
T Consensus 90 I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~-~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v 167 (233)
T 3tt9_A 90 VAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS-NDKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLDFDI 167 (233)
T ss_dssp HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT-SGGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred HHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHc-ChhhHHHHHh-ccHHHHHHHHhccccCCcccccccccccchHHH
Confidence 999999999999998 4678888877777777654 4555666665 589999987630 1136789
Q ss_pred HHHHHHHHHHHhhcccccCCCCcchhHHhC-CcHHHHHHhhcC------CChHHHHHHHHHHHHHhc
Q 015709 277 HRKAVSLVGDLAKCQLENMHKVEPPLFRDR-FFLKSVVDLTAS------ADLDLQEKALAAIKNLLQ 336 (402)
Q Consensus 277 q~kA~~lL~~L~~~~l~~~~~~~~~~l~~~-g~v~~Lv~lL~~------~d~dv~E~aL~aL~~L~~ 336 (402)
+.+|+.+|.+|+. .+++.+..+.+. |+|+.|+.+++. .+...+|.++.+|.+|..
T Consensus 168 ~~na~~~L~nLss-----~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~ 229 (233)
T 3tt9_A 168 FYNVTGCLRNMSS-----AGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY 229 (233)
T ss_dssp HHHHHHHHHHHTT-----SCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhc-----CCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHh
Confidence 9999999999984 355788888875 789999999875 266899999999999864
No 24
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.77 E-value=6.1e-18 Score=184.69 Aligned_cols=223 Identities=10% Similarity=0.017 Sum_probs=182.3
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHh-cCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh---
Q 015709 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSK-LGGLSVLVGQLNHPDTDIRKISAWILGKASQNNP--- 206 (402)
Q Consensus 131 ~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~-lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp--- 206 (402)
.+.+.+...|.++..+.+.+..|++.|.++..+.+....++. .|++|+|+.+|+++++.++..|+|+|+|++...+
T Consensus 377 ~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~ 456 (810)
T 3now_A 377 KLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQE 456 (810)
T ss_dssp HHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCC
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhh
Confidence 456667777777655668899999999999999999999886 6899999999999999999999999999998642
Q ss_pred --------------------------HhH---HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhc
Q 015709 207 --------------------------LVQ---KQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVE 257 (402)
Q Consensus 207 --------------------------~~Q---~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~ 257 (402)
.++ +.+++.|++|.|+.+++++++.++..|+|+|+|++. ++.++..++++
T Consensus 457 ~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~ 535 (810)
T 3now_A 457 MLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCG-LKELRGKVVQE 535 (810)
T ss_dssp CCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHT
T ss_pred hhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHC
Confidence 234 678999999999999999999999999999999985 57789999999
Q ss_pred CcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcc-hhHHhCCcHHHHHHhhcCC-ChHHHHHHHHHHHHHh
Q 015709 258 AGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEP-PLFRDRFFLKSVVDLTASA-DLDLQEKALAAIKNLL 335 (402)
Q Consensus 258 gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~-~~l~~~g~v~~Lv~lL~~~-d~dv~E~aL~aL~~L~ 335 (402)
||+++|+.+|+++ +...|+.|+|+|++|+.. .++... ..-...|+++.|+++|.++ +...+..|+.||.+|+
T Consensus 536 Gaip~Lv~LL~s~--~~~~k~~Aa~AL~nL~~~----~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa 609 (810)
T 3now_A 536 GGVKALLRMALEG--TEKGKRHATQALARIGIT----INPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLA 609 (810)
T ss_dssp THHHHHHHHHHSS--CHHHHHHHHHHHHHHHHH----SCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHccC--CHHHHHHHHHHHHHHhcC----CChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 9999999999986 567899999999999863 232211 0001246999999999876 4445678999999999
Q ss_pred cCChhhHHHHHhcCCcHHHHHHHHH
Q 015709 336 QLRTTEALVLKDFCGLDTALERLRQ 360 (402)
Q Consensus 336 ~~~~~~~~~~~~~~GL~~~L~~L~~ 360 (402)
..+++.++.+.+.+|+......|.+
T Consensus 610 ~~~d~~~~~Ii~aG~l~~Lv~LL~s 634 (810)
T 3now_A 610 SMNESVRQRIIKEQGVSKIEYYLME 634 (810)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHcCCHHHHHHHHcC
Confidence 9876666666656676666555543
No 25
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.76 E-value=2.8e-17 Score=169.97 Aligned_cols=219 Identities=14% Similarity=0.126 Sum_probs=182.7
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHccCCC-CchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHH
Q 015709 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPI-DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ 211 (402)
Q Consensus 133 Mk~al~~L~~~~~t~e~k~~AL~~L~~Lve~i-DnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~ 211 (402)
+..+++.|.++. +++.+..|+..|..+.... ++...+...|++++|+.+|.++++.+|..|+|+|++++.+++..+..
T Consensus 132 i~~Lv~~L~~~~-~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~ 210 (530)
T 1wa5_B 132 VPRLVEFMRENQ-PEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDY 210 (530)
T ss_dssp HHHHHHTTSTTS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhCCCC-CHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHH
Confidence 445555565542 5678889999999988754 56677888999999999999999999999999999999999999999
Q ss_pred HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcc
Q 015709 212 VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ 291 (402)
Q Consensus 212 ~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~ 291 (402)
+++.|+++.|+.++.+.+..++..|+|+|++++++..+....+...|+++.|+.+|.++ +..++..|+++|.+|+..
T Consensus 211 ~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~--d~~v~~~a~~~L~~L~~~- 287 (530)
T 1wa5_B 211 VLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM--DTETLVDACWAISYLSDG- 287 (530)
T ss_dssp HHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCC--CHHHHHHHHHHHHHHHSS-
T ss_pred HHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCC--CHHHHHHHHHHHHHHhCC-
Confidence 99999999999999998889999999999999998644445666789999999999976 678999999999999842
Q ss_pred cccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCcHHHHHHHH
Q 015709 292 LENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLR 359 (402)
Q Consensus 292 l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~~~L~~L~ 359 (402)
.+.....+.+.|+++.|+.+|.+++..+++.++.+|.+++...+...+.+.+.+++...+..|+
T Consensus 288 ----~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~ 351 (530)
T 1wa5_B 288 ----PQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLS 351 (530)
T ss_dssp ----CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT
T ss_pred ----CHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHc
Confidence 3455677888999999999999999999999999999999876555555553444444444443
No 26
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.76 E-value=3.4e-17 Score=163.61 Aligned_cols=219 Identities=15% Similarity=0.168 Sum_probs=180.0
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHccCC-CCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHH
Q 015709 132 LIQIAIDDLNNSTLSLEDSQRALQELLILVEP-IDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK 210 (402)
Q Consensus 132 lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~-iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~ 210 (402)
.+..+++.+.+.. +++.+..|+..|..+... .++...+...|+++.|+.+|+++++.+|..|+++|++++.+++..+.
T Consensus 65 ~i~~L~~~L~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~ 143 (450)
T 2jdq_A 65 VVARFVEFLKRKE-NCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRD 143 (450)
T ss_dssp HHHHHHHHHTCTT-CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHCCCC-CHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence 4555666666542 568889999999998874 46677788899999999999999999999999999999999999999
Q ss_pred HHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCC-hhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHh
Q 015709 211 QVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNN-LAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLA 288 (402)
Q Consensus 211 ~~le~g~L~~Ll~LL~s-~~~~vr~kAl~ALS~LiR~~-~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~ 288 (402)
.+++.|+++.|+.++.+ .+..++..|+++|++++++. +.....++ .++++.|+.++.++ +..++..++++|.+|+
T Consensus 144 ~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~--~~~v~~~a~~~L~~l~ 220 (450)
T 2jdq_A 144 YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVS--DTDVLADACWALSYLS 220 (450)
T ss_dssp HHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCC--CHHHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccC--CHHHHHHHHHHHHHHH
Confidence 99999999999999996 57899999999999999876 43333333 79999999999975 6789999999999998
Q ss_pred hcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCcHHHHHHHH
Q 015709 289 KCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLR 359 (402)
Q Consensus 289 ~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~~~L~~L~ 359 (402)
.. .+.....+.+.|+++.|+.+|.+++..+++.++.+|.+++...+...+.+.+.+++...+..|+
T Consensus 221 ~~-----~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~ 286 (450)
T 2jdq_A 221 DG-----PNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLS 286 (450)
T ss_dssp SS-----SHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTT
T ss_pred CC-----CcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHc
Confidence 52 3345667788999999999999999999999999999999887655554543444444444443
No 27
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.76 E-value=5e-17 Score=171.99 Aligned_cols=182 Identities=14% Similarity=0.114 Sum_probs=159.0
Q ss_pred hcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcC-Chhc
Q 015709 172 KLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRN-NLAG 250 (402)
Q Consensus 172 ~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~-~~~~ 250 (402)
..+++++|+.+|.++++++|..|+++|.+++..++..+..+.+.|+||+|+++|++++..++..|+|||.+|+.+ ++.+
T Consensus 46 ~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~n 125 (584)
T 3l6x_A 46 RQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDN 125 (584)
T ss_dssp CCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHH
T ss_pred ccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHH
Confidence 367899999999999999999999999999999999999999999999999999999999999999999999986 6899
Q ss_pred HHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhc-------------
Q 015709 251 QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA------------- 317 (402)
Q Consensus 251 ~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~------------- 317 (402)
...++++||++.|+.+|++.. +..++..|+++|.+|+. +++.+..+.+ +.++.|+++|.
T Consensus 126 k~~I~~~GaIp~LV~LL~s~~-~~~~~e~aa~aL~nLS~------~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~ 197 (584)
T 3l6x_A 126 KIAIKNCDGVPALVRLLRKAR-DMDLTEVITGTLWNLSS------HDSIKMEIVD-HALHALTDEVIIPHSGWEREPNED 197 (584)
T ss_dssp HHHHHHTTHHHHHHHHHHHCC-SHHHHHHHHHHHHHHTT------SGGGHHHHHH-HTHHHHHHHTHHHHHCCC------
T ss_pred HHHHHHcCCHHHHHHHHcCCC-CHHHHHHHHHHHHHHhC------CchhhHHHHh-ccHHHHHHHHhccccccccccccc
Confidence 999999999999999999742 56789999999999984 4566777775 56999999871
Q ss_pred -----CCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCcH-HHHHHHHHH
Q 015709 318 -----SADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLD-TALERLRQQ 361 (402)
Q Consensus 318 -----~~d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~-~~L~~L~~~ 361 (402)
.++.++++.|..+|.+|+...++.|+.+++.+|+- +++..|+..
T Consensus 198 ~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~ 247 (584)
T 3l6x_A 198 CKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAE 247 (584)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHH
T ss_pred ccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 23689999999999999998877788888777764 666666654
No 28
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.74 E-value=2e-16 Score=161.55 Aligned_cols=221 Identities=15% Similarity=0.179 Sum_probs=178.0
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHH
Q 015709 132 LIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ 211 (402)
Q Consensus 132 lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~ 211 (402)
.+..++..|.+. .+.+.+..|+..|..+....++...+.+.|++++|+.+|+++++.+|..|+++|++++.+++..+..
T Consensus 60 ~i~~Lv~~L~~~-~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 138 (529)
T 1jdh_A 60 MVSAIVRTMQNT-NDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA 138 (529)
T ss_dssp HHHHHHHHHHHC-CCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHH
T ss_pred hHHHHHHHHhcC-CCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHH
Confidence 455566666654 2678888999999999888888999999999999999999999999999999999999998888999
Q ss_pred HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcc
Q 015709 212 VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ 291 (402)
Q Consensus 212 ~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~ 291 (402)
+.+.|++|.|++++.+++..++..++.+|++++.+++.....+.+.||++.|+.+|+++. +...+..++.++.+|+.
T Consensus 139 i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~-~~~~~~~a~~~L~~l~~-- 215 (529)
T 1jdh_A 139 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSRVLKVLSV-- 215 (529)
T ss_dssp HHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTT--
T ss_pred HHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCC-hHHHHHHHHHHHHHHhc--
Confidence 999999999999999988899999999999999999999999999999999999998652 33445555555555553
Q ss_pred cccCCCCcchhHHhC---------------------------------------CcHHHHHHhhcCCChHHHHHHHHHHH
Q 015709 292 LENMHKVEPPLFRDR---------------------------------------FFLKSVVDLTASADLDLQEKALAAIK 332 (402)
Q Consensus 292 l~~~~~~~~~~l~~~---------------------------------------g~v~~Lv~lL~~~d~dv~E~aL~aL~ 332 (402)
++..+..+.+. |+++.|+.+|.++++++++.++.+|.
T Consensus 216 ----~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 291 (529)
T 1jdh_A 216 ----CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILS 291 (529)
T ss_dssp ----STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred ----CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 22333333333 45566667777778888999999999
Q ss_pred HHhcCChhhHHHHHhcCCcHHHHHHHHH
Q 015709 333 NLLQLRTTEALVLKDFCGLDTALERLRQ 360 (402)
Q Consensus 333 ~L~~~~~~~~~~~~~~~GL~~~L~~L~~ 360 (402)
+|+...++.++.+.+.+|+...+..|+.
T Consensus 292 ~L~~~~~~~~~~~~~~~~v~~L~~ll~~ 319 (529)
T 1jdh_A 292 NLTCNNYKNKMMVCQVGGIEALVRTVLR 319 (529)
T ss_dssp HHTTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHcCChHHHHHHHHc
Confidence 9988766667777767777777777764
No 29
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.74 E-value=2e-17 Score=180.64 Aligned_cols=217 Identities=12% Similarity=0.045 Sum_probs=179.0
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHH---hcCCHHHHHHhcCCC-CHHHHHHHHHHHHHHhcCChHh
Q 015709 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLS---KLGGLSVLVGQLNHP-DTDIRKISAWILGKASQNNPLV 208 (402)
Q Consensus 133 Mk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~---~lGgl~~Li~lL~s~-~~~Ir~~Aa~vLg~~aqNNp~~ 208 (402)
++-++..|.+. +.+.+..|...|..++...+....|. ..|++|+|+.+|.++ +...+..|+|+|++++..++..
T Consensus 538 ip~Lv~LL~s~--~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~ 615 (810)
T 3now_A 538 VKALLRMALEG--TEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESV 615 (810)
T ss_dssp HHHHHHHHHSS--CHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHccC--CHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHH
Confidence 34455556554 45778889999998886665554442 257999999999875 4455679999999999999999
Q ss_pred HHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHh-cCcHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q 015709 209 QKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYV-EAGDLMLQDILGNSSFEIRLHRKAVSLVGDL 287 (402)
Q Consensus 209 Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~-~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L 287 (402)
++.+++.|++|+|+.++.++++.++..|+++|+|++.+ +..+..|.. .|+++.|+.++.++ +..+|+.|+|+|++|
T Consensus 616 ~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~-~~~~~~~v~~~g~l~~Lv~LL~s~--d~~vq~~Aa~ALanL 692 (810)
T 3now_A 616 RQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMS-EDVIKMFEGNNDRVKFLALLCEDE--DEETATACAGALAII 692 (810)
T ss_dssp HHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTS-HHHHHHHHSSSSHHHHHHHGGGCS--SHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-hHHHHHHHhccCcHHHHHHHhcCC--CHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999975 567888885 79999999999986 678999999999999
Q ss_pred hhcccccCCCCcchhHHh-CCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCcHHHHHHHH
Q 015709 288 AKCQLENMHKVEPPLFRD-RFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLR 359 (402)
Q Consensus 288 ~~~~l~~~~~~~~~~l~~-~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~~~L~~L~ 359 (402)
+.. ++.....+.+ .|+++.|+++|.++|.+++..|+.+|.+++..+.+.+..+.+.++++++...|+
T Consensus 693 t~~-----s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~ 760 (810)
T 3now_A 693 TSV-----SVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQ 760 (810)
T ss_dssp HHH-----CHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCC
T ss_pred hCC-----CHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHh
Confidence 852 3456677777 899999999999999999999999999999877777777775555655544443
No 30
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.73 E-value=5.7e-17 Score=158.26 Aligned_cols=166 Identities=14% Similarity=0.021 Sum_probs=145.0
Q ss_pred HHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHH-hhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHh
Q 015709 188 TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMK-MVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDI 266 (402)
Q Consensus 188 ~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~-LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~l 266 (402)
.+-|..|+..|..++.+ ......|.+.|++|+|+. +|+++++.+|..|+|+|++++.+++..++.+++.||++.|+.+
T Consensus 54 ~e~k~~Al~~L~~lv~~-~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 54 QQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhC-hhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 46789999999999975 557888999999999999 9999999999999999999999999999999999999999999
Q ss_pred hcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChhhHHHHH
Q 015709 267 LGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLK 346 (402)
Q Consensus 267 L~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~~~~~~ 346 (402)
|+++ .+..++++|+|+|++|+.+ ++.....|.+.|+++.|+.+|.+++..++..|+.+|.+|+...++.++.+.
T Consensus 133 L~~~-~~~~v~~~A~~ALsnl~~~-----~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv 206 (296)
T 1xqr_A 133 LDRD-ACDTVRVKALFAISCLVRE-----QEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLC 206 (296)
T ss_dssp HHHC-SCHHHHHHHHHHHHHHHTT-----CHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HccC-CCHHHHHHHHHHHHHHHcC-----CcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHH
Confidence 9964 2577999999999999953 445666788899999999999999999999999999999987666777777
Q ss_pred hcCCcHHHHHHHHH
Q 015709 347 DFCGLDTALERLRQ 360 (402)
Q Consensus 347 ~~~GL~~~L~~L~~ 360 (402)
+.+++.+++..|+.
T Consensus 207 ~~g~i~~Lv~LL~~ 220 (296)
T 1xqr_A 207 SMGMVQQLVALVRT 220 (296)
T ss_dssp HTTHHHHHHHHHTS
T ss_pred HcCCHHHHHHHHcC
Confidence 56667666666654
No 31
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.72 E-value=7.3e-16 Score=163.70 Aligned_cols=222 Identities=15% Similarity=0.163 Sum_probs=183.6
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHH
Q 015709 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK 210 (402)
Q Consensus 131 ~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~ 210 (402)
..+..++..|.+. .+.+.+..|+..|..+....++...+.+.|++++|+.+|+++++.+|..|+++|++++.+++..+.
T Consensus 56 ~~i~~Lv~~L~~~-~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~ 134 (644)
T 2z6h_A 56 QMVSAIVRTMQNT-NDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM 134 (644)
T ss_dssp HHHHHHHHHHHSC-CCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHH
T ss_pred ChHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHH
Confidence 3456667777754 367888999999999988888889999999999999999999999999999999999999888999
Q ss_pred HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015709 211 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (402)
Q Consensus 211 ~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~ 290 (402)
.+.+.|++|.|++++++++..++..++.+|++++.+++.+...+.+.||++.|+.+|++.. ...++..++.+|.+|+.
T Consensus 135 ~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~-~~~~~~~a~~~L~nLs~- 212 (644)
T 2z6h_A 135 AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSRVLKVLSV- 212 (644)
T ss_dssp HHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCC-CHHHHHHHHHHHHHHTT-
T ss_pred HHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCC-hHHHHHHHHHHHHHHhc-
Confidence 9999999999999999988888888999999999888999999999999999999999863 56788889999999974
Q ss_pred ccccCCCCcchhHHhCCcHHHHH---------------------------------------HhhcCCChHHHHHHHHHH
Q 015709 291 QLENMHKVEPPLFRDRFFLKSVV---------------------------------------DLTASADLDLQEKALAAI 331 (402)
Q Consensus 291 ~l~~~~~~~~~~l~~~g~v~~Lv---------------------------------------~lL~~~d~dv~E~aL~aL 331 (402)
.+..+..+.+.|+++.|+ .+|.+++.++++.++.+|
T Consensus 213 -----~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL 287 (644)
T 2z6h_A 213 -----CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGIL 287 (644)
T ss_dssp -----CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred -----CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 345566666666655554 455556777888888888
Q ss_pred HHHhcCChhhHHHHHhcCCcHHHHHHHHH
Q 015709 332 KNLLQLRTTEALVLKDFCGLDTALERLRQ 360 (402)
Q Consensus 332 ~~L~~~~~~~~~~~~~~~GL~~~L~~L~~ 360 (402)
.+|+......++.+.+.+++..++..|+.
T Consensus 288 ~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~ 316 (644)
T 2z6h_A 288 SNLTCNNYKNKMMVCQVGGIEALVRTVLR 316 (644)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHcCCHHHHHHHHHc
Confidence 88887765566666656677777777654
No 32
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.69 E-value=4.4e-16 Score=164.77 Aligned_cols=196 Identities=15% Similarity=0.094 Sum_probs=162.8
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHccC-CCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcC-ChHhHH
Q 015709 133 IQIAIDDLNNSTLSLEDSQRALQELLILVE-PIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQN-NPLVQK 210 (402)
Q Consensus 133 Mk~al~~L~~~~~t~e~k~~AL~~L~~Lve-~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqN-Np~~Q~ 210 (402)
+..++..|.+. +++.+..|...|..++. +.++...+...||+|+|+.+|.++++++|..|+|+|++++.+ |+.++.
T Consensus 50 i~~LV~~L~s~--~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~ 127 (584)
T 3l6x_A 50 LPEVIAMLGFR--LDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKI 127 (584)
T ss_dssp HHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHH
T ss_pred HHHHHHHHCCC--CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHH
Confidence 44556677654 56788888899999884 677888999999999999999999999999999999999985 799999
Q ss_pred HHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhc----------------CCCcc
Q 015709 211 QVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILG----------------NSSFE 273 (402)
Q Consensus 211 ~~le~g~L~~Ll~LL~s-~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~----------------s~~~d 273 (402)
.|++.|+||+|+++|++ .+.+++..|.+||.+|.. ++.+...+++ +|++.|++++. ....+
T Consensus 128 ~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d 205 (584)
T 3l6x_A 128 AIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEW 205 (584)
T ss_dssp HHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCC
T ss_pred HHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHHHHhccccccccccccccccccccc
Confidence 99999999999999997 467888888888888876 5677777774 78999999872 01125
Q ss_pred HHHHHHHHHHHHHHhhcccccCCCCcchhHHh-CCcHHHHHHhhcC------CChHHHHHHHHHHHHHhcC
Q 015709 274 IRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD-RFFLKSVVDLTAS------ADLDLQEKALAAIKNLLQL 337 (402)
Q Consensus 274 ~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~-~g~v~~Lv~lL~~------~d~dv~E~aL~aL~~L~~~ 337 (402)
..++..|+++|.+|+.. ++..+..+++ .|+++.|+.+|.+ .+...+|.++.+|.+|...
T Consensus 206 ~~V~~nAa~~L~NLs~~-----~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~ 271 (584)
T 3l6x_A 206 ESVLTNTAGCLRNVSSE-----RSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQ 271 (584)
T ss_dssp HHHHHHHHHHHHHHTSS-----CHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcC-----CHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhcc
Confidence 78999999999999842 3455777776 5778899999874 4678999999999999865
No 33
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.67 E-value=5.3e-15 Score=161.34 Aligned_cols=221 Identities=16% Similarity=0.202 Sum_probs=179.1
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHH
Q 015709 132 LIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ 211 (402)
Q Consensus 132 lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~ 211 (402)
.+..++..|.+.. +++.+..|+..|..+....++...+.+.|++++|+.+|+++++.+|..|+++|++++.+++..+..
T Consensus 193 ~i~~Lv~~L~~~~-d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~ 271 (780)
T 2z6g_A 193 MVSAIVRTMQNTN-DVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMA 271 (780)
T ss_dssp HHHHHHHHHHHCC-CHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHH
T ss_pred hHHHHHHHHcCCC-CHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHH
Confidence 3444555565543 678899999999998888888888999999999999999999999999999999999999999999
Q ss_pred HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcc
Q 015709 212 VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ 291 (402)
Q Consensus 212 ~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~ 291 (402)
+.+.|+++.|+.++.+++..++..|+.+|.+++.+++.+...+.+.||++.|+.+|++.. +...+..++.++.+|+..
T Consensus 272 v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~-~~~~~~~a~~aL~~Ls~~- 349 (780)
T 2z6g_A 272 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSRVLKVLSVC- 349 (780)
T ss_dssp HHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHTS-
T ss_pred HHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhhcC-
Confidence 999999999999999988889999999999999889999999999999999999998763 444555666666666532
Q ss_pred cccCCCCcchhHHhC---------------------------------------CcHHHHHHhhcCCChHHHHHHHHHHH
Q 015709 292 LENMHKVEPPLFRDR---------------------------------------FFLKSVVDLTASADLDLQEKALAAIK 332 (402)
Q Consensus 292 l~~~~~~~~~~l~~~---------------------------------------g~v~~Lv~lL~~~d~dv~E~aL~aL~ 332 (402)
+..+..+.+. ++++.|+.+|.+++.++++.|+.+|.
T Consensus 350 -----~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~ 424 (780)
T 2z6g_A 350 -----SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILS 424 (780)
T ss_dssp -----TTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred -----hHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 2223333333 45667777777788899999999999
Q ss_pred HHhcCChhhHHHHHhcCCcHHHHHHHHH
Q 015709 333 NLLQLRTTEALVLKDFCGLDTALERLRQ 360 (402)
Q Consensus 333 ~L~~~~~~~~~~~~~~~GL~~~L~~L~~ 360 (402)
+|+......+..+.+.+|+..++..|..
T Consensus 425 ~L~~~~~~~~~~i~~~g~i~~Lv~lL~~ 452 (780)
T 2z6g_A 425 NLTCNNYKNKMMVCQVGGIEALVRTVLR 452 (780)
T ss_dssp HHTSSCHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHCCCHHHHHHHHHc
Confidence 9988776666667657777777777765
No 34
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.66 E-value=3.4e-15 Score=152.37 Aligned_cols=221 Identities=18% Similarity=0.151 Sum_probs=179.4
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHH
Q 015709 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQV 212 (402)
Q Consensus 133 Mk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~ 212 (402)
+..++..+.+.+ ....+..+...|..+....++...+.+.|++++|+.++.++++.++..|+|+|++++.+.+.. .
T Consensus 187 i~~L~~ll~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-~-- 262 (529)
T 1jdh_A 187 PQALVNIMRTYT-YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ-E-- 262 (529)
T ss_dssp HHHHHHHHHHCC-CHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC-S--
T ss_pred HHHHHHHHHhCC-hHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhh-H--
Confidence 344455555543 334555677778888888888899999999999999999999999999999999999876542 1
Q ss_pred HHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhccc
Q 015709 213 LELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQL 292 (402)
Q Consensus 213 le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l 292 (402)
...|++|.|++++.++++.++..|+++|++++.+++...+.+.+.||++.|+.+|.+++.+..++..|+++|.+|+..
T Consensus 263 ~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~-- 340 (529)
T 1jdh_A 263 GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR-- 340 (529)
T ss_dssp CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS--
T ss_pred HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcC--
Confidence 124789999999999999999999999999999988899999999999999999986433467999999999999852
Q ss_pred ccCCCC---cchhHHhCCcHHHHHHhhcCCC-hHHHHHHHHHHHHHhcCChhhHHHHHhcCCcHHHHHHHHHHhH
Q 015709 293 ENMHKV---EPPLFRDRFFLKSVVDLTASAD-LDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQ 363 (402)
Q Consensus 293 ~~~~~~---~~~~l~~~g~v~~Lv~lL~~~d-~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~~~L~~L~~~~~ 363 (402)
++. .+..+.+.|.++.|+.+|.+++ ..++..++.+|.+++..+. .+..+.+.+++...+..|+....
T Consensus 341 ---~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~~i~~L~~ll~~~~~ 411 (529)
T 1jdh_A 341 ---HQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLREQGAIPRLVQLLVRAHQ 411 (529)
T ss_dssp ---STTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG-GHHHHHHTTHHHHHHHHHHHHHH
T ss_pred ---CchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChh-hhHHHHHcCCHHHHHHHHHHHhH
Confidence 233 3567889999999999999886 5999999999999998765 45666656666777777765443
No 35
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.64 E-value=6.7e-15 Score=156.32 Aligned_cols=223 Identities=17% Similarity=0.167 Sum_probs=173.1
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHH-------------------------------
Q 015709 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVG------------------------------- 181 (402)
Q Consensus 133 Mk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~------------------------------- 181 (402)
+..++..+.+.. ..+.+..++..|..+....++...+.+.|++++|+.
T Consensus 184 v~~Lv~lL~~~~-~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~ 262 (644)
T 2z6h_A 184 PQALVNIMRTYT-YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGME 262 (644)
T ss_dssp HHHHHHHHTTCC-CHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCH
T ss_pred hHHHHHHHHcCC-hHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhh
Confidence 344455555443 334455666666666666667777777776666655
Q ss_pred --------hcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCC--HHHHHHHHHHHHHHhcCChh--
Q 015709 182 --------QLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF--VEEAVKALYTVSSLIRNNLA-- 249 (402)
Q Consensus 182 --------lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~--~~vr~kAl~ALS~LiR~~~~-- 249 (402)
+|.++++++|..|+|+|++++.+++..+..+.+.|+++.|+.++.+.+ +.++..|+++|++++.+++.
T Consensus 263 ~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~ 342 (644)
T 2z6h_A 263 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAE 342 (644)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHH
Confidence 445577888999999999999988999999999999999999998643 78999999999999987653
Q ss_pred -cHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCC---------
Q 015709 250 -GQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--------- 319 (402)
Q Consensus 250 -~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~--------- 319 (402)
.+..++..||++.|+.+|.+++ +..++..|+++|++|+. ++..+..+.+.|+++.|+++|..+
T Consensus 343 ~~q~~v~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nLa~------~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~ 415 (644)
T 2z6h_A 343 MAQNAVRLHYGLPVVVKLLHPPS-HWPLIKATVGLIRNLAL------CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTS 415 (644)
T ss_dssp HHHHHHHHTTHHHHHHHTTSTTC-CHHHHHHHHHHHHHHTT------SGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHccChHHHHHHhCccC-chHHHHHHHHHHHHHcc------CHHHHHHHHHcCCHHHHHHHHhccchhhhhHhh
Confidence 4566889999999999999863 46799999999999985 345568888999999999998763
Q ss_pred -------------ChHHHHHHHHHHHHHhcCChhhHHHHHhcCCcHHHHHHHHHHhHH
Q 015709 320 -------------DLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQE 364 (402)
Q Consensus 320 -------------d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~~~L~~L~~~~~~ 364 (402)
+.++++.++.+|.+|+... ..+..+.+.+++.+.+..|++...+
T Consensus 416 ~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~-~~~~~l~~~~~i~~Lv~lL~~~~~~ 472 (644)
T 2z6h_A 416 MGGTQQQFVEGVRMEEIVEGCTGALHILARDV-HNRIVIRGLNTIPLFVQLLYSPIEN 472 (644)
T ss_dssp --------CCSSCHHHHHHHHHHHHHHHTTSH-HHHHHHHHTTCHHHHHHHTTCSCHH
T ss_pred hccccchhcccccHHHHHHHHHHHHHHHhcCH-HHHHHHHhCCcHHHHHHHHcCCCHH
Confidence 3567889999999999875 5677787677887777777554433
No 36
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.60 E-value=1e-14 Score=159.08 Aligned_cols=220 Identities=15% Similarity=0.063 Sum_probs=176.2
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCC-CchhHHHhcCCHHHHHHhcCC-C-CHHHHHHHHHHHHHHhcCChH
Q 015709 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPI-DNANDLSKLGGLSVLVGQLNH-P-DTDIRKISAWILGKASQNNPL 207 (402)
Q Consensus 131 ~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~i-DnA~~l~~lGgl~~Li~lL~s-~-~~~Ir~~Aa~vLg~~aqNNp~ 207 (402)
..+..++..+.+. +.+.+..|+..|.++.... ++...+.+.||++.|+.+|.+ + .+.+|..|+++|++++.+++.
T Consensus 399 ~~i~~Lv~lL~~~--d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~ 476 (780)
T 2z6g_A 399 GLLGTLVQLLGSD--DINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQD 476 (780)
T ss_dssp HHHHHHHHHTTCS--CHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTT
T ss_pred hHHHHHHHHHcCC--CHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCch
Confidence 4555556666543 5678889999999988764 577889999999999999965 3 359999999999999988775
Q ss_pred ---hHHHHHHcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCc-----------
Q 015709 208 ---VQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSF----------- 272 (402)
Q Consensus 208 ---~Q~~~le~g~L~~Ll~LL~s~~-~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~----------- 272 (402)
.|..+.+.|++|.|+.+|.+++ ..++..|+|+|+++.++ +..+..+.+.|+++.|+.+|.+...
T Consensus 477 ~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~ 555 (780)
T 2z6g_A 477 AEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGT 555 (780)
T ss_dssp HHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSS-HHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcC-HHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccc
Confidence 4678899999999999999877 48999999999999985 5567888899999999999975311
Q ss_pred ---------cHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChhhHH
Q 015709 273 ---------EIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEAL 343 (402)
Q Consensus 273 ---------d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~~~ 343 (402)
+..++..++.+|.+|+. ++..+..+.+.|+++.|+.+|.+++.+++..++.+|.+|+... ..+.
T Consensus 556 nq~~~~~~~~~~v~~~a~~aL~~La~------~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~-~~~~ 628 (780)
T 2z6g_A 556 QQQFVEGVRMEEIVEACTGALHILAR------DIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK-EAAE 628 (780)
T ss_dssp --CCSTTCCHHHHHHHHHHHHHHHTT------SHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSH-HHHH
T ss_pred cchhhcccChHHHHHHHHHHHHHHhc------ChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCH-HHHH
Confidence 12355667777777763 3456667889999999999999999999999999999998764 4667
Q ss_pred HHHhcCCcHHHHHHHHH
Q 015709 344 VLKDFCGLDTALERLRQ 360 (402)
Q Consensus 344 ~~~~~~GL~~~L~~L~~ 360 (402)
.+.+.+|+..+.+.+++
T Consensus 629 ~i~~~g~i~~L~~Ll~~ 645 (780)
T 2z6g_A 629 AIEAEGATAPLTELLHS 645 (780)
T ss_dssp HHHHTTCHHHHHHGGGC
T ss_pred HHHHCCCHHHHHHHHcC
Confidence 77766677666555443
No 37
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.45 E-value=1.5e-12 Score=140.72 Aligned_cols=218 Identities=15% Similarity=0.188 Sum_probs=165.9
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHH---HHHHHHHHHHHHh-cCChH
Q 015709 132 LIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTD---IRKISAWILGKAS-QNNPL 207 (402)
Q Consensus 132 lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~---Ir~~Aa~vLg~~a-qNNp~ 207 (402)
.+.-++..+.+. ++..+..|...|..+..+.++...+.+.||+++|+++|.+.... +|..|+++|+++. ..||.
T Consensus 458 vIp~Lv~Ll~S~--s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~ 535 (778)
T 3opb_A 458 LISFLKREMHNL--SPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPG 535 (778)
T ss_dssp HHHHHHHHGGGS--CHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHH
T ss_pred CHHHHHHHHcCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHH
Confidence 455555556553 57889999999999999999999999999999999999876544 8999999999998 45665
Q ss_pred hHHHHHH---cCcHHHHHHhhcC--CCH-----------HH-HHHHHHHHHHHhcCC----hhcHHHHHhc-CcHHHHHH
Q 015709 208 VQKQVLE---LGALSKLMKMVKS--SFV-----------EE-AVKALYTVSSLIRNN----LAGQEMFYVE-AGDLMLQD 265 (402)
Q Consensus 208 ~Q~~~le---~g~L~~Ll~LL~s--~~~-----------~v-r~kAl~ALS~LiR~~----~~~~~~f~~~-gGi~~L~~ 265 (402)
. .|-. .|++|+|+.||.. +.. .. +..|+.||.||+... ...+..++.+ |+++.|..
T Consensus 536 ~--~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~ 613 (778)
T 3opb_A 536 L--IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIEN 613 (778)
T ss_dssp H--HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHH
T ss_pred H--HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHH
Confidence 4 2211 3899999999983 111 12 668999999999875 2346667775 99999999
Q ss_pred hhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcc-hhHHhC------CcHHHHHHhhcCCChHHHHHHHHHHHHHhc-C
Q 015709 266 ILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEP-PLFRDR------FFLKSVVDLTASADLDLQEKALAAIKNLLQ-L 337 (402)
Q Consensus 266 lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~-~~l~~~------g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~-~ 337 (402)
+|.++ +..+|+.|+++++||+.+ ++.+ ..+... +-++.|+.++.++|.++|+.|..||.+++. .
T Consensus 614 LL~s~--n~~VrrAA~elI~NL~~~------~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~ 685 (778)
T 3opb_A 614 LMLDE--NVPLQRSTLELISNMMSH------PLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTI 685 (778)
T ss_dssp GGGCS--SHHHHHHHHHHHHHHHTS------GGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHC
T ss_pred HHhCC--CHHHHHHHHHHHHHHhCC------cHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC
Confidence 99986 567999999999999953 3332 233222 237899999999999999999999999964 4
Q ss_pred ChhhHHHHHhcCCcHHHHHHHHHH
Q 015709 338 RTTEALVLKDFCGLDTALERLRQQ 361 (402)
Q Consensus 338 ~~~~~~~~~~~~GL~~~L~~L~~~ 361 (402)
+..++..++...|++..+..|+.+
T Consensus 686 ~~ia~~ll~~~~gi~~Ll~lL~~~ 709 (778)
T 3opb_A 686 PLIAKELLTKKELIENAIQVFADQ 709 (778)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHccccHHHHHHHHhcc
Confidence 434566665346788888888773
No 38
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.43 E-value=3.4e-12 Score=135.14 Aligned_cols=223 Identities=16% Similarity=0.111 Sum_probs=176.6
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCC------------------chhHHH-hcCCHHHHHHhcCCCCHHHHH
Q 015709 132 LIQIAIDDLNNSTLSLEDSQRALQELLILVEPID------------------NANDLS-KLGGLSVLVGQLNHPDTDIRK 192 (402)
Q Consensus 132 lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iD------------------nA~~l~-~lGgl~~Li~lL~s~~~~Ir~ 192 (402)
-|+..+.+|++...+.|--..+|+.|.++....+ ++..|. +-++++.|+.+|++++-.+|.
T Consensus 61 ~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~ 140 (651)
T 3grl_A 61 AMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRW 140 (651)
T ss_dssp THHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHH
T ss_pred hHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHH
Confidence 4888899998877777766778888877665432 233443 367899999999999999999
Q ss_pred HHHHHHHHHhcCChH-hHHHHHHc-CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCC
Q 015709 193 ISAWILGKASQNNPL-VQKQVLEL-GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS 270 (402)
Q Consensus 193 ~Aa~vLg~~aqNNp~-~Q~~~le~-g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~ 270 (402)
+|..+|..++.++|. +|+.++.. +|++.|+.+|+++.+.+|-.|+..|++++++|+..|+.+.-.||++.|..++...
T Consensus 141 ~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~E 220 (651)
T 3grl_A 141 PGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEE 220 (651)
T ss_dssp HHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhc
Confidence 999999999999999 99999966 9999999999998899999999999999999999888888889999999999864
Q ss_pred Cc--cHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChH------HHH---HHHHHHHHHhcCCh
Q 015709 271 SF--EIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLD------LQE---KALAAIKNLLQLRT 339 (402)
Q Consensus 271 ~~--d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~d------v~E---~aL~aL~~L~~~~~ 339 (402)
.. .-.+...++.++.+|+. .+++.+..|.+.|+++.|+.+|..++.. ... .++.++..|+..+.
T Consensus 221 g~~~Ggivv~DCL~ll~nLLr-----~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~ 295 (651)
T 3grl_A 221 GNSDGGIVVEDCLILLQNLLK-----NNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNN 295 (651)
T ss_dssp TGGGSHHHHHHHHHHHHHHHT-----TCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTS
T ss_pred CCCccchhHHHHHHHHHHHHh-----cCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCC
Confidence 21 23578899999999995 4778899999999999999999865321 222 36666666766522
Q ss_pred ------hhHHHHHhcCCcHHHHHHHH
Q 015709 340 ------TEALVLKDFCGLDTALERLR 359 (402)
Q Consensus 340 ------~~~~~~~~~~GL~~~L~~L~ 359 (402)
.+...+.+.+++.++++.+.
T Consensus 296 ~~~~t~~nQ~~~~~~g~l~~Ll~ll~ 321 (651)
T 3grl_A 296 PPGATSSCQKAMFQCGLLQQLCTILM 321 (651)
T ss_dssp CHHHHHHHHHHHHHTTHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHCCCHHHHHHHHc
Confidence 24455664555666655543
No 39
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.43 E-value=3.5e-12 Score=137.97 Aligned_cols=168 Identities=12% Similarity=0.145 Sum_probs=135.6
Q ss_pred chhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHH---HHHHHHHHHHH
Q 015709 166 NANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVE---EAVKALYTVSS 242 (402)
Q Consensus 166 nA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~---vr~kAl~ALS~ 242 (402)
|...+.+.|++++|+.+++++++.+|..|+|+|++++. ++.++..+++.|++++|+.++.+.+.. .|..|+.||++
T Consensus 449 ~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~-d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALAr 527 (778)
T 3opb_A 449 NEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITR-SKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTR 527 (778)
T ss_dssp HHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHT-SGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence 34567789999999999999999999999999999985 599999999999999999999987654 79999999999
Q ss_pred HhcCChhcHHHHHh---cCcHHHHHHhhcC-CCc-----------cHHHHHHHHHHHHHHhhcccccCC---CCcchhHH
Q 015709 243 LIRNNLAGQEMFYV---EAGDLMLQDILGN-SSF-----------EIRLHRKAVSLVGDLAKCQLENMH---KVEPPLFR 304 (402)
Q Consensus 243 LiR~~~~~~~~f~~---~gGi~~L~~lL~s-~~~-----------d~klq~kA~~lL~~L~~~~l~~~~---~~~~~~l~ 304 (402)
++-...+.. .|-. .|++++|+.+|.. +.. +..-+..|+.+|+||+.. .+ ++.+..++
T Consensus 528 Llis~np~~-~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~----~~n~~E~~r~~Ii 602 (778)
T 3opb_A 528 MLIFTNPGL-IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASS----ETSDGEEVCKHIV 602 (778)
T ss_dssp HHHTSCHHH-HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHC----CSHHHHHHHHHHH
T ss_pred HHhcCCHHH-HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcC----CcccchHHHHHHH
Confidence 885533322 3421 4999999999983 211 112367999999999963 11 13467677
Q ss_pred hC-CcHHHHHHhhcCCChHHHHHHHHHHHHHhcCCh
Q 015709 305 DR-FFLKSVVDLTASADLDLQEKALAAIKNLLQLRT 339 (402)
Q Consensus 305 ~~-g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~ 339 (402)
++ |+++.|.++|.+++..+|..|+.++++|+..++
T Consensus 603 ~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e 638 (778)
T 3opb_A 603 STKVYWSTIENLMLDENVPLQRSTLELISNMMSHPL 638 (778)
T ss_dssp HSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGG
T ss_pred HhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcH
Confidence 75 999999999999999999999999999998653
No 40
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.10 E-value=2.8e-09 Score=112.98 Aligned_cols=217 Identities=17% Similarity=0.170 Sum_probs=174.1
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCC--CCHHHHHHHHHHHHHHhcC
Q 015709 127 PSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH--PDTDIRKISAWILGKASQN 204 (402)
Q Consensus 127 ~~d~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s--~~~~Ir~~Aa~vLg~~aqN 204 (402)
++..+.+..+.+.+.+. .-.++|..|+..|..+..+ ...-+..+|++.|+..|+. .+.++-..+..+|.++...
T Consensus 17 qs~~etI~~L~~Rl~~~-tl~eDRR~Av~~Lk~~sk~---y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~ 92 (651)
T 3grl_A 17 HTEAETIQKLCDRVASS-TLLDDRRNAVRALKSLSKK---YRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISN 92 (651)
T ss_dssp -CHHHHHHHHHHHHHHC-CSHHHHHHHHHHHHHTTTT---TTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCC
T ss_pred CChhhHHHHHHHHHhhc-cchhHHHHHHHHHHHHHHH---hHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCC
Confidence 35678888888888874 4679999999999998754 2345557899999999954 6888889999999887766
Q ss_pred ChHh-----------------HHHHH-HcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh-cHHHHHhc-CcHHHHH
Q 015709 205 NPLV-----------------QKQVL-ELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA-GQEMFYVE-AGDLMLQ 264 (402)
Q Consensus 205 Np~~-----------------Q~~~l-e~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~-~~~~f~~~-gGi~~L~ 264 (402)
++.. .+.|+ +.+.++.|+.+|++++-.+|..++-.|+.++.+++. .++.+..+ +|++.|+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv 172 (651)
T 3grl_A 93 DEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLM 172 (651)
T ss_dssp C--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHH
T ss_pred CCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHH
Confidence 5432 22343 458899999999998889999999999999999988 78888865 9999999
Q ss_pred HhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCCh----HHHHHHHHHHHHHhcCChh
Q 015709 265 DILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADL----DLQEKALAAIKNLLQLRTT 340 (402)
Q Consensus 265 ~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~----dv~E~aL~aL~~L~~~~~~ 340 (402)
.+|+++ ...+|-.|+.+|.+|+. .+++.++.+.-+|..+.|.+++..+.. -+.+.++..|.+|+.....
T Consensus 173 ~lL~d~--rE~iRneallLL~~Lt~-----~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~s 245 (651)
T 3grl_A 173 DLLADS--REVIRNDGVLLLQALTR-----SNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNS 245 (651)
T ss_dssp GGGGCS--SHHHHHHHHHHHHHHHT-----TCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHhCc--hHHHHHHHHHHHHHHhc-----CCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHH
Confidence 999986 35699999999999995 466777777778999999999987543 7889999999999999876
Q ss_pred hHHHHHhcCCcHHH
Q 015709 341 EALVLKDFCGLDTA 354 (402)
Q Consensus 341 ~~~~~~~~~GL~~~ 354 (402)
....|++.+++..+
T Consensus 246 NQ~~FrEt~~i~~L 259 (651)
T 3grl_A 246 NQNFFKEGSYIQRM 259 (651)
T ss_dssp HHHHHHHTTCGGGG
T ss_pred HHHHHHHcCCHHHH
Confidence 77788855544433
No 41
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.96 E-value=2.9e-09 Score=114.49 Aligned_cols=169 Identities=12% Similarity=0.092 Sum_probs=135.1
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHH-HhhcCCCHHHHHHHHHHHHHHhcC-ChhcHH
Q 015709 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLM-KMVKSSFVEEAVKALYTVSSLIRN-NLAGQE 252 (402)
Q Consensus 175 gl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll-~LL~s~~~~vr~kAl~ALS~LiR~-~~~~~~ 252 (402)
.+.|+++.|+|++++.|..||++|+++++ ++..+..++..|++.+++ .+|.+++.++|..|++||.||+.+ .+....
T Consensus 35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 35 KILPVLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp TTHHHHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 56788899999999999999999999997 788999999999998876 578888899999999999999876 466677
Q ss_pred HHHhcCcHHHHHHhhcCCC------------cc-------HHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHH
Q 015709 253 MFYVEAGDLMLQDILGNSS------------FE-------IRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVV 313 (402)
Q Consensus 253 ~f~~~gGi~~L~~lL~s~~------------~d-------~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv 313 (402)
.++..|++++|..++++.. .. ..+...++.+|.+||.. +......+...+.++.++
T Consensus 114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~-----s~~~~~~v~~~~~l~~l~ 188 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALA-----RDEIHEAVATKQTILRLL 188 (684)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHH-----CHHHHHHHHTCHHHHHHH
T ss_pred HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhC-----CHHHHHHHHhcccHHHHH
Confidence 7889999999999985310 00 11233567788888853 345566777889999999
Q ss_pred HhhcCC---ChHHHHHHHHHHHHHhcCChhhHHHHHhcC
Q 015709 314 DLTASA---DLDLQEKALAAIKNLLQLRTTEALVLKDFC 349 (402)
Q Consensus 314 ~lL~~~---d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~ 349 (402)
.+|... ..+++..|+.+|..|..+.....+.+.+.+
T Consensus 189 ~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~ 227 (684)
T 4gmo_A 189 FRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQ 227 (684)
T ss_dssp HHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCC
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcc
Confidence 988543 468999999999999999877667776443
No 42
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.95 E-value=6.7e-08 Score=86.50 Aligned_cols=154 Identities=16% Similarity=0.152 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHh
Q 015709 129 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLV 208 (402)
Q Consensus 129 d~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~ 208 (402)
+.......++.|.++ +++.+..|+..|..+-. -+.++.|+.+|+++++.+|..|+++|+.+.. +
T Consensus 12 ~~~~~~~~i~~L~~~--~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--~-- 75 (201)
T 3ltj_A 12 DPEKVEMYIKNLQDD--SYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--E-- 75 (201)
T ss_dssp CHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G--
T ss_pred CCcchHHHHHHhcCC--CHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--H--
Confidence 344555666777665 46788888888876432 2578999999999999999999999999863 2
Q ss_pred HHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHh
Q 015709 209 QKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLA 288 (402)
Q Consensus 209 Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~ 288 (402)
.+++.|+.++.++++.+|..|+++|+.+- .+ ..++.|..+|.++ +..+|..|++++..+.
T Consensus 76 -------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~--~~---------~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~ 135 (201)
T 3ltj_A 76 -------RAVEPLIKALKDEDGWVRQSAAVALGQIG--DE---------RAVEPLIKALKDE--DWFVRIAAAFALGEIG 135 (201)
T ss_dssp -------GGHHHHHHHTTCSSHHHHHHHHHHHHHHC--CG---------GGHHHHHHHTTCS--SHHHHHHHHHHHHHHT
T ss_pred -------HHHHHHHHHHcCCCHHHHHHHHHHHHHhC--cH---------HHHHHHHHHHcCC--CHHHHHHHHHHHHHhC
Confidence 57899999999988999999999999863 22 4677888889875 6789999999999874
Q ss_pred hcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHH
Q 015709 289 KCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNL 334 (402)
Q Consensus 289 ~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L 334 (402)
+ ...++.|..+|..++..++..++.+|..+
T Consensus 136 -------~---------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~ 165 (201)
T 3ltj_A 136 -------D---------ERAVEPLIKALKDEDGWVRQSAADALGEI 165 (201)
T ss_dssp -------C---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred -------C---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 1 35788899999999999999999999888
No 43
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.91 E-value=7e-08 Score=87.05 Aligned_cols=154 Identities=16% Similarity=0.141 Sum_probs=121.1
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhH
Q 015709 130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQ 209 (402)
Q Consensus 130 ~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q 209 (402)
.+.+..+++.|.++ +...+..|+..|..+-. -++++.|+.+|.++++.+|..|+++|+.+..
T Consensus 18 ~~~~~~L~~~L~~~--~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------ 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDD--SYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ 79 (211)
T ss_dssp GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------
T ss_pred HhHHHHHHHHHcCC--CHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence 34455566666644 56788888888876433 2578999999999999999999999999863
Q ss_pred HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015709 210 KQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (402)
Q Consensus 210 ~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~ 289 (402)
.++++.|+.++.++++.+|..|+++|+.+- . ...++.|..+|.++ +..+|..|+.+|..+.
T Consensus 80 -----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~--~---------~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~- 140 (211)
T 3ltm_A 80 -----ERAVEPLIKALKDEDGWVRQSAAVALGQIG--D---------ERAVEPLIKALKDE--DWFVRIAAAFALGEIG- 140 (211)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--C---------GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHC-
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--c---------HHHHHHHHHHHhCC--CHHHHHHHHHHHHHcC-
Confidence 257899999999888899999999999873 2 24677888888875 6778999999998874
Q ss_pred cccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHh
Q 015709 290 CQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL 335 (402)
Q Consensus 290 ~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~ 335 (402)
+ ...++.|..+|..+++.++..++.+|..+.
T Consensus 141 ------~---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 171 (211)
T 3ltm_A 141 ------D---------ERAVEPLIKALKDEDGWVRQSAADALGEIG 171 (211)
T ss_dssp ------C---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred ------C---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 1 246788889998889999999999888874
No 44
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.84 E-value=5.2e-08 Score=87.22 Aligned_cols=151 Identities=15% Similarity=0.141 Sum_probs=121.4
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHH
Q 015709 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQV 212 (402)
Q Consensus 133 Mk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~ 212 (402)
+..+++.+.++ ++..+..|+..|..+-. -..++.|+.+|+++++.+|..|+++|+.+.. +
T Consensus 47 ~~~L~~~l~~~--~~~vr~~a~~~L~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~------ 106 (201)
T 3ltj_A 47 VEPLIKALKDE--DAWVRRAAADALGQIGD----------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD--E------ 106 (201)
T ss_dssp HHHHHHHTTCS--SHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G------
T ss_pred HHHHHHHHcCC--CHHHHHHHHHHHHhhCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--H------
Confidence 44555666544 56778888888876432 2578999999999999999999999999853 2
Q ss_pred HHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhccc
Q 015709 213 LELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQL 292 (402)
Q Consensus 213 le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l 292 (402)
.+++.|+.+++++++.+|..|+++|+.+- . ...++.|..++.++ +..+|..|+++|..+-.
T Consensus 107 ---~~~~~L~~~l~d~~~~vr~~a~~aL~~~~--~---------~~~~~~L~~~l~d~--~~~vr~~A~~aL~~~~~--- 167 (201)
T 3ltj_A 107 ---RAVEPLIKALKDEDWFVRIAAAFALGEIG--D---------ERAVEPLIKALKDE--DGWVRQSAADALGEIGG--- 167 (201)
T ss_dssp ---GGHHHHHHHTTCSSHHHHHHHHHHHHHHT--C---------GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHCS---
T ss_pred ---HHHHHHHHHHcCCCHHHHHHHHHHHHHhC--C---------HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCc---
Confidence 47899999999989999999999999873 2 24678899999876 67899999999998741
Q ss_pred ccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHh
Q 015709 293 ENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL 335 (402)
Q Consensus 293 ~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~ 335 (402)
...++.|..++..++..++..|..+|..+-
T Consensus 168 -------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 168 -------------ERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp -------------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred -------------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 236778888998899999999999988764
No 45
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.80 E-value=6.3e-08 Score=87.35 Aligned_cols=155 Identities=14% Similarity=0.122 Sum_probs=121.9
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHH
Q 015709 132 LIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ 211 (402)
Q Consensus 132 lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~ 211 (402)
.+..+++.+.++ ++..+..|+..|..+-. -+.++.|+.+|+++++.+|..|+++|+.+..
T Consensus 51 ~~~~L~~~l~~~--~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------- 110 (211)
T 3ltm_A 51 AVEPLIKALKDE--DAWVRRAAADALGQIGD----------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-------- 110 (211)
T ss_dssp GHHHHHHHTTCS--CHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHHcCC--CHHHHHHHHHHHHhhCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------
Confidence 344455666654 57788888888876532 3578999999999999999999999999863
Q ss_pred HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcc
Q 015709 212 VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ 291 (402)
Q Consensus 212 ~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~ 291 (402)
...++.|+.+++++++.+|..|+++|+.+- .+ ..++.|..+++++ +..+|..|+.+|..+..
T Consensus 111 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~--~~---------~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~~-- 172 (211)
T 3ltm_A 111 ---ERAVEPLIKALKDEDWFVRIAAAFALGEIG--DE---------RAVEPLIKALKDE--DGWVRQSAADALGEIGG-- 172 (211)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--CG---------GGHHHHHHHTTCS--SHHHHHHHHHHHHHHCS--
T ss_pred ---HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CH---------HHHHHHHHHHcCC--CHHHHHHHHHHHHHhCc--
Confidence 257899999999999999999999999872 22 4678889999875 67899999999998741
Q ss_pred cccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCC
Q 015709 292 LENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 338 (402)
Q Consensus 292 l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~ 338 (402)
...++.|..++..+++.++..|..+|..+....
T Consensus 173 --------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 173 --------------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp --------------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-----
T ss_pred --------------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 346778888999999999999999998887653
No 46
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.74 E-value=4.7e-08 Score=105.09 Aligned_cols=192 Identities=15% Similarity=0.086 Sum_probs=145.2
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHH-hcCCCCHHHHHHHHHHHHHHhcC-ChHhHHHHH
Q 015709 136 AIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVG-QLNHPDTDIRKISAWILGKASQN-NPLVQKQVL 213 (402)
Q Consensus 136 al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~-lL~s~~~~Ir~~Aa~vLg~~aqN-Np~~Q~~~l 213 (402)
.++.|.++ ++++|..|+..|.+++++..+...+.+.|++.+++. +|.+++.+||..|+++|++++.. .+.+...++
T Consensus 39 ll~~L~S~--~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~ 116 (684)
T 4gmo_A 39 VLKDLKSP--DAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLY 116 (684)
T ss_dssp HHHHHSSS--CCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHcCCC--CHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHH
Confidence 44556554 467899999999999998888889999999998765 78999999999999999999986 588999999
Q ss_pred HcCcHHHHHHhhcCCC--------------H-------HHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcC-CC
Q 015709 214 ELGALSKLMKMVKSSF--------------V-------EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGN-SS 271 (402)
Q Consensus 214 e~g~L~~Ll~LL~s~~--------------~-------~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s-~~ 271 (402)
..|++++|+.++++.. . .+...++++|.+++.++..+...+...++++.|+.+|.+ ..
T Consensus 117 ~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~~~ 196 (684)
T 4gmo_A 117 RLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISADI 196 (684)
T ss_dssp HTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHHCC
T ss_pred HcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhcCC
Confidence 9999999999986411 1 123457788888888888888899999999999999853 22
Q ss_pred ccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHH---HHHHhhcCCChHHHHHHHHHHHHHh
Q 015709 272 FEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLK---SVVDLTASADLDLQEKALAAIKNLL 335 (402)
Q Consensus 272 ~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~---~Lv~lL~~~d~dv~E~aL~aL~~L~ 335 (402)
....++..|+.+|+.|+. .++.....+.+.+... .+..+.+..+ ..+.-++..|.++.
T Consensus 197 ~~~~v~~~a~~~L~~ls~-----dn~~~~~~i~~~~~~~~~~~ll~~~~~~~-~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 197 APQDIYEEAISCLTTLSE-----DNLKVGQAITDDQETHVYDVLLKLATGTD-PRAVMACGVLHNVF 257 (684)
T ss_dssp SCHHHHHHHHHHHHHHHT-----TCHHHHHHHHTCCSSCHHHHHHHHHHSSC-TTHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhc-----cCHHHHHHHHhcchHHHHHHHHHHhcCCc-HHHHHHHHHHHhHh
Confidence 456799999999999984 3455666666665432 3333333333 33455566666653
No 47
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.73 E-value=6.1e-07 Score=84.36 Aligned_cols=121 Identities=10% Similarity=0.079 Sum_probs=82.5
Q ss_pred cCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHH
Q 015709 183 LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLM 262 (402)
Q Consensus 183 L~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~ 262 (402)
++++++.+|..|+++||.+...+|.... ..++.|+.+++++++.+|..|+++|+.+.. ...++.
T Consensus 100 ~~d~~~~vr~~a~~aL~~l~~~~~~~~~-----~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-----------~~~~~~ 163 (280)
T 1oyz_A 100 LNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITAFDKSTNVRRATAFAISVIND-----------KATIPL 163 (280)
T ss_dssp HHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHTC--------------CCHHH
T ss_pred hcCCCHHHHHHHHHHHHHHhccCCcccH-----HHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-----------HHHHHH
Confidence 3566777777777777777655543322 346777777777777777777777776531 246777
Q ss_pred HHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHh
Q 015709 263 LQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL 335 (402)
Q Consensus 263 L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~ 335 (402)
|..+++++ +..+|..|+++|..+.. + ...+++.|+.+|..+++.++..++.+|..+.
T Consensus 164 L~~~l~d~--~~~vr~~a~~aL~~~~~------~--------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 164 LINLLKDP--NGDVRNWAAFAININKY------D--------NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK 220 (280)
T ss_dssp HHHHHTCS--SHHHHHHHHHHHHHHTC------C--------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHcCC--CHHHHHHHHHHHHhhcc------C--------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence 88888765 55678888888877631 1 1245678888888888888888888888775
No 48
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.68 E-value=8.1e-07 Score=83.53 Aligned_cols=146 Identities=11% Similarity=0.048 Sum_probs=110.0
Q ss_pred CHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhh
Q 015709 146 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV 225 (402)
Q Consensus 146 t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL 225 (402)
++..+..++..|..+..... ...-..++.|+.+|+++++.+|..|+++||.+.. .++++.|+.++
T Consensus 104 ~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-----------~~~~~~L~~~l 168 (280)
T 1oyz_A 104 SACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND-----------KATIPLLINLL 168 (280)
T ss_dssp CHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--------------CCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-----------HHHHHHHHHHH
Confidence 45666666666665432111 0112357888899999999999999999998753 25899999999
Q ss_pred cCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHh
Q 015709 226 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD 305 (402)
Q Consensus 226 ~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~ 305 (402)
++++..+|..|+++|+.+..+.+ ..++.|..+++++ +..+|..|+++|..+. .
T Consensus 169 ~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~--~~~vR~~A~~aL~~~~----------------~ 221 (280)
T 1oyz_A 169 KDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDK--NEEVRIEAIIGLSYRK----------------D 221 (280)
T ss_dssp TCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCS--CHHHHHHHHHHHHHTT----------------C
T ss_pred cCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCC--CHHHHHHHHHHHHHhC----------------C
Confidence 99999999999999998843332 3567889999876 6779999999998764 2
Q ss_pred CCcHHHHHHhhcCCChHHHHHHHHHHHHHh
Q 015709 306 RFFLKSVVDLTASADLDLQEKALAAIKNLL 335 (402)
Q Consensus 306 ~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~ 335 (402)
...++.|+.+|..++ ++..++.+|..+.
T Consensus 222 ~~~~~~L~~~l~d~~--vr~~a~~aL~~i~ 249 (280)
T 1oyz_A 222 KRVLSVLCDELKKNT--VYDDIIEAAGELG 249 (280)
T ss_dssp GGGHHHHHHHHTSSS--CCHHHHHHHHHHC
T ss_pred HhhHHHHHHHhcCcc--HHHHHHHHHHhcC
Confidence 357888999998754 8888888888774
No 49
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.44 E-value=5.1e-06 Score=76.89 Aligned_cols=174 Identities=10% Similarity=0.116 Sum_probs=129.0
Q ss_pred CCHHHHHHHHHHHHHccCCC-Cc-hhHHHhcCCHHHHHHhc-CCCCHHHHHHHHHHHHHHhcCCh-HhHHHHHHcCcHHH
Q 015709 145 LSLEDSQRALQELLILVEPI-DN-ANDLSKLGGLSVLVGQL-NHPDTDIRKISAWILGKASQNNP-LVQKQVLELGALSK 220 (402)
Q Consensus 145 ~t~e~k~~AL~~L~~Lve~i-Dn-A~~l~~lGgl~~Li~lL-~s~~~~Ir~~Aa~vLg~~aqNNp-~~Q~~~le~g~L~~ 220 (402)
.+-..|..|+..|..+++.. +. ..++.+ .++.|...| +.++..+|..|+.+++.++..-. .....+ ...+|.
T Consensus 27 ~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~--i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~--~~ilp~ 102 (242)
T 2qk2_A 27 KKWTLRKESLEVLEKLLTDHPKLENGEYGA--LVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA--SACVPS 102 (242)
T ss_dssp SSHHHHHHHHHHHHHHHHHCSSBCCCCCHH--HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH--HHHHHH
T ss_pred CCHHHHHHHHHHHHHHHccCCCCCCCCHHH--HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH--HHHHHH
Confidence 35688999999999988752 21 223333 366778888 48999999999999999996411 121211 237899
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCC--
Q 015709 221 LMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKV-- 298 (402)
Q Consensus 221 Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~-- 298 (402)
|+..+.+.+..+|..|..||.+++...+ ... -++.|...|+++ ++++|..++.+|..++.. ..+.
T Consensus 103 ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~~-----ll~~l~~~l~~~--~~~vr~~~l~~l~~~l~~----~~~~~~ 169 (242)
T 2qk2_A 103 LLEKFKEKKPNVVTALREAIDAIYASTS--LEA-----QQESIVESLSNK--NPSVKSETALFIARALTR----TQPTAL 169 (242)
T ss_dssp HHHGGGCCCHHHHHHHHHHHHHHHTTSC--HHH-----HHHHHHHHTTCS--CHHHHHHHHHHHHHHHTT----CCGGGC
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHcCC--HHH-----HHHHHHHHHcCC--ChHHHHHHHHHHHHHHHH----cCCCCc
Confidence 9999999889999999999999987643 222 356677788875 678999999999997642 1222
Q ss_pred cchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcC
Q 015709 299 EPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 337 (402)
Q Consensus 299 ~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~ 337 (402)
....+ ..+++.++.+|...+..+|..|..++..++..
T Consensus 170 ~~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 170 NKKLL--KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp CHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred cHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 22233 36899999999999999999999999998754
No 50
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.43 E-value=8.8e-06 Score=80.11 Aligned_cols=194 Identities=17% Similarity=0.102 Sum_probs=147.5
Q ss_pred CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH-ccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh
Q 015709 128 SDAQLIQIAIDDLNNSTLSLEDSQRALQELLI-LVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNP 206 (402)
Q Consensus 128 ~d~~lMk~al~~L~~~~~t~e~k~~AL~~L~~-Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp 206 (402)
++......+++.|.+. +.+++..+|-.|.. +-++.+.|..|+..+|+..|+......+.+++.++..+++.+.-. .
T Consensus 115 sps~ra~~iiekL~~~--~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~-v 191 (339)
T 3dad_A 115 QLSVRVNAILEKLYSS--SGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLF-V 191 (339)
T ss_dssp CHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTS-H
T ss_pred CcHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhc-c
Confidence 4556778888888865 56889999999999 557899999999999999999999999999999999999999864 3
Q ss_pred HhHHHHH-HcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhc-------Cc---HHHHHHhhcC-CCccH
Q 015709 207 LVQKQVL-ELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVE-------AG---DLMLQDILGN-SSFEI 274 (402)
Q Consensus 207 ~~Q~~~l-e~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~-------gG---i~~L~~lL~s-~~~d~ 274 (402)
.--+.++ ....|..|..++.+....+...|+.-|-+++-..+.+...+.++ .| ++.|+.+|++ ++.|.
T Consensus 192 ~Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~ 271 (339)
T 3dad_A 192 DGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADP 271 (339)
T ss_dssp HHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCH
T ss_pred ccccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCH
Confidence 3333444 44578899999998777887888888888887766555554432 23 8899999972 12478
Q ss_pred HHHHHHHHHHHHHhhcccccCCC----CcchhHHhCCcHHHHHHhhcCC--ChHHHHHH
Q 015709 275 RLHRKAVSLVGDLAKCQLENMHK----VEPPLFRDRFFLKSVVDLTASA--DLDLQEKA 327 (402)
Q Consensus 275 klq~kA~~lL~~L~~~~l~~~~~----~~~~~l~~~g~v~~Lv~lL~~~--d~dv~E~a 327 (402)
.++.+|+.+|..+.... .+. +....+.+.|+=..+..++++. |++++++.
T Consensus 272 elq~~amtLIN~lL~~a---pd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Ql 327 (339)
T 3dad_A 272 ELLVYTVTLINKTLAAL---PDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQL 327 (339)
T ss_dssp HHHHHHHHHHHHHHHHC---SSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcC---CChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHHH
Confidence 89999999999988641 111 2344556677777777777765 66777663
No 51
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.41 E-value=1.9e-05 Score=74.21 Aligned_cols=186 Identities=13% Similarity=0.150 Sum_probs=146.0
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHh-cCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHH
Q 015709 132 LIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSK-LGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK 210 (402)
Q Consensus 132 lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~-lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~ 210 (402)
....+++.|.+ .+..-+.++|..|++++...|-.-.... -.+++.++.++.++|..|-..|.+||+++..|.|-.-+
T Consensus 34 ~l~~L~~LL~d--kD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 34 ALFLILELAGE--DDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHTTS--SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred HHHHHHHHHhc--cchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 44445555544 3567899999999999988654443333 45899999999999999999999999999999998888
Q ss_pred HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015709 211 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (402)
Q Consensus 211 ~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~ 290 (402)
.+.+ .+..|..++.+.++-.+..|.-.++.+ +--.+ . -+.+..|.+++.|+ +.++|.-+..++.+++..
T Consensus 112 ~y~K--l~~aL~dlik~~~~il~~eaae~Lgkl-kv~~~-~-----~~V~~~l~sLl~Sk--d~~vK~agl~~L~eia~~ 180 (265)
T 3b2a_A 112 TFLK--AAKTLVSLLESPDDMMRIETIDVLSKL-QPLED-S-----KLVRTYINELVVSP--DLYTKVAGFCLFLNMLNS 180 (265)
T ss_dssp HHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHC-CBSCC-C-----HHHHHHHHHHHTCS--SHHHHHHHHHHHHHHGGG
T ss_pred HHHH--HHHHHHHHhcCCCchHHHHHHHHhCcC-Ccccc-h-----HHHHHHHHHHHhCC--ChhHHHHHHHHHHHhhcc
Confidence 7775 468899999988888889999999988 22111 1 13467889999775 788999999999999864
Q ss_pred ccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCC
Q 015709 291 QLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 338 (402)
Q Consensus 291 ~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~ 338 (402)
..+++... +++.-+.++|+++|+.+++.|+.++..+++.+
T Consensus 181 ---S~D~~i~~-----~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 181 ---SADSGHLT-----LILDEIPSLLQNDNEFIVELALDVLEKALSFP 220 (265)
T ss_dssp ---CSSCCCGG-----GTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred ---cCCHHHHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence 34555554 34556788999999999999999999999874
No 52
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.39 E-value=3.2e-08 Score=83.68 Aligned_cols=120 Identities=10% Similarity=0.060 Sum_probs=88.5
Q ss_pred cCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHH
Q 015709 173 LGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQE 252 (402)
Q Consensus 173 lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~ 252 (402)
-..++.++.+|+++++.+|..|+++|+.+.. + .++.|+.+++++++.+|..|+++|+.+- .+
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~--~----------~~~~L~~~L~d~~~~vR~~A~~aL~~~~--~~---- 72 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD--E----------AFEPLLESLSNEDWRIRGAAAWIIGNFQ--DE---- 72 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSS--T----------THHHHHHGGGCSCHHHHHHHHHHHGGGC--SH----
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc--h----------HHHHHHHHHcCCCHHHHHHHHHHHHhcC--CH----
Confidence 3467788899999999999999999987642 1 2689999999888999999999999863 22
Q ss_pred HHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHH
Q 015709 253 MFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIK 332 (402)
Q Consensus 253 ~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~ 332 (402)
..++.|..+|+++ +..+|..|+++|..+.. ...++.|+.+|+.+|..++..|..+|.
T Consensus 73 -----~a~~~L~~~L~d~--~~~VR~~A~~aL~~~~~----------------~~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 73 -----RAVEPLIKLLEDD--SGFVRSGAARSLEQIGG----------------ERVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp -----HHHHHHHHHHHHC--CTHHHHHHHHHHHHHCS----------------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred -----HHHHHHHHHHcCC--CHHHHHHHHHHHHHhCc----------------HHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 2477888888765 56789999999998741 245788899998889999999988775
Q ss_pred H
Q 015709 333 N 333 (402)
Q Consensus 333 ~ 333 (402)
.
T Consensus 130 ~ 130 (131)
T 1te4_A 130 T 130 (131)
T ss_dssp G
T ss_pred h
Confidence 4
No 53
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.35 E-value=4.6e-06 Score=85.36 Aligned_cols=172 Identities=11% Similarity=0.017 Sum_probs=120.2
Q ss_pred CHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhh
Q 015709 146 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV 225 (402)
Q Consensus 146 t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL 225 (402)
+...+..+++.|..+....... +..-..++.++.+|++++..||..|+.+++.++..... .+.....+|.|+.++
T Consensus 415 ~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~---~~~~~~llp~l~~~~ 489 (588)
T 1b3u_A 415 KWRVRLAIIEYMPLLAGQLGVE--FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGK---EWAHATIIPKVLAMS 489 (588)
T ss_dssp SHHHHHHHHHHHHHHHHHHCGG--GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH---HHHHHHTHHHHHHTT
T ss_pred CchHHHHHHHHHHHHHHHcCHH--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc---hhHHHHHHHHHHHHh
Confidence 3455666666666555432211 11112467778888888999999999999999875332 122345788888888
Q ss_pred cCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHh
Q 015709 226 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD 305 (402)
Q Consensus 226 ~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~ 305 (402)
++.+..+|..++++++.++..... .++...-++.|..+++++ +..+|..+++++..++.. .+ ..+..
T Consensus 490 ~~~~~~~R~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~~l~d~--~~~Vr~~a~~~l~~l~~~----~~----~~~~~ 556 (588)
T 1b3u_A 490 GDPNYLHRMTTLFCINVLSEVCGQ---DITTKHMLPTVLRMAGDP--VANVRFNVAKSLQKIGPI----LD----NSTLQ 556 (588)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHHHH---HHHHHHTHHHHHHGGGCS--CHHHHHHHHHHHHHHGGG----SC----HHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHhhCCCC--CchHHHHHHHHHHHHHHH----hc----hhhhH
Confidence 887888899999999998875432 233446778888888876 567899999999998853 11 22334
Q ss_pred CCcHHHHHHhhcCCChHHHHHHHHHHHHHh
Q 015709 306 RFFLKSVVDLTASADLDLQEKALAAIKNLL 335 (402)
Q Consensus 306 ~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~ 335 (402)
..+++.+..++..+|.++|+.|..++..+.
T Consensus 557 ~~~~p~l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 557 SEVKPILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence 567777778777779999999999888764
No 54
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.35 E-value=1.1e-06 Score=95.62 Aligned_cols=175 Identities=14% Similarity=0.073 Sum_probs=122.8
Q ss_pred HHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCC
Q 015709 150 SQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF 229 (402)
Q Consensus 150 k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~ 229 (402)
+..|...|..++.... ..+.. ..++.+..+++++++.+|..|++++|.++.+.+..-... -.+.+|.|+.++++++
T Consensus 338 r~~a~~~L~~la~~~~--~~~~~-~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~-l~~~l~~l~~~l~d~~ 413 (852)
T 4fdd_A 338 RKCSAAALDVLANVYR--DELLP-HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPY-LPELIPHLIQCLSDKK 413 (852)
T ss_dssp HHHHHHHHHHHHHHHG--GGGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGG-HHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHhcc--HHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHH-HHHHHHHHHHHcCCCC
Confidence 4455555555544322 12221 246677778889999999999999999998876432222 2467899999999989
Q ss_pred HHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcH
Q 015709 230 VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFL 309 (402)
Q Consensus 230 ~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v 309 (402)
+.+|..|+|+|+.+....+.....-+-.+.++.|...|.++ +.++|..|++++.+++... .+...+.+ .+++
T Consensus 414 ~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~--~~~vr~~a~~aL~~l~~~~----~~~l~~~l--~~ll 485 (852)
T 4fdd_A 414 ALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDS--NKRVQEAACSAFATLEEEA----CTELVPYL--AYIL 485 (852)
T ss_dssp HHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHH----GGGGGGGH--HHHH
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHh----hHhhHhHH--HHHH
Confidence 99999999999998875432111111235678888888775 6789999999999998642 22333433 4678
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHhc
Q 015709 310 KSVVDLTASADLDLQEKALAAIKNLLQ 336 (402)
Q Consensus 310 ~~Lv~lL~~~d~dv~E~aL~aL~~L~~ 336 (402)
+.|+.+++..+......++.++..++.
T Consensus 486 ~~L~~~l~~~~~~~~~~~~~ai~~l~~ 512 (852)
T 4fdd_A 486 DTLVFAFSKYQHKNLLILYDAIGTLAD 512 (852)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 888888887777777777778877763
No 55
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.32 E-value=9e-06 Score=85.51 Aligned_cols=161 Identities=16% Similarity=0.162 Sum_probs=114.2
Q ss_pred HhHHHHHHHHHHc-CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHH
Q 015709 112 KRQMEIKELMEKL-KTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDI 190 (402)
Q Consensus 112 ~r~~~L~ea~~~l-~~~~d~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~I 190 (402)
+|.+-+++++-.+ .|.+-....-..++.+.++ +.+.|..+.-.+..+.+.. .++. .-.+..+.+.|+++++.+
T Consensus 29 ~k~~~~~kli~~~~~G~d~~~~~~~vi~l~~s~--~~~~Krl~yl~l~~~~~~~---~e~~-~l~~n~l~kdL~~~n~~i 102 (591)
T 2vgl_B 29 KRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQTD--NLELKKLVYLYLMNYAKSQ---PDMA-IMAVNSFVKDCEDPNPLI 102 (591)
T ss_dssp HHHHHHHHHHHHHHTTCCCGGGHHHHHHTTSSS--CHHHHHHHHHHHHHHHHHS---HHHH-HTTHHHHGGGSSSSSHHH
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcccC---chHH-HHHHHHHHHHcCCCCHHH
Confidence 3555566665443 3444334444555555443 4666766655666554421 1222 224667778899999999
Q ss_pred HHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCC
Q 015709 191 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS 270 (402)
Q Consensus 191 r~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~ 270 (402)
|..|..++|++. +|..... .+|.+.+++.+.++.+|.+|++|+..+.+.+|.... ..+.++.|..+|.++
T Consensus 103 r~~AL~~L~~i~--~~~~~~~-----l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~---~~~~~~~l~~lL~d~ 172 (591)
T 2vgl_B 103 RALAVRTMGCIR--VDKITEY-----LCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVE---DQGFLDSLRDLIADS 172 (591)
T ss_dssp HHHHHHHHHTCC--SGGGHHH-----HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHH---HHHHHHHHHHTTSCS
T ss_pred HHHHHHHHHcCC--hHHHHHH-----HHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcc---cccHHHHHHHHhCCC
Confidence 999999999986 5654444 368899999999999999999999999998876433 346679999999875
Q ss_pred CccHHHHHHHHHHHHHHhhc
Q 015709 271 SFEIRLHRKAVSLVGDLAKC 290 (402)
Q Consensus 271 ~~d~klq~kA~~lL~~L~~~ 290 (402)
++.++..|+.++..++..
T Consensus 173 --d~~V~~~A~~aL~~i~~~ 190 (591)
T 2vgl_B 173 --NPMVVANAVAALSEISES 190 (591)
T ss_dssp --CHHHHHHHHHHHHHHTTS
T ss_pred --ChhHHHHHHHHHHHHHhh
Confidence 678999999999999853
No 56
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.31 E-value=1e-05 Score=82.70 Aligned_cols=175 Identities=11% Similarity=0.022 Sum_probs=119.9
Q ss_pred CHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhh
Q 015709 146 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV 225 (402)
Q Consensus 146 t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL 225 (402)
+++.|..|++.|..+++..... ...-..+|.+..+++++++.+|..|+.+++.++...+.- ......+|.+..++
T Consensus 177 ~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~ 251 (588)
T 1b3u_A 177 TPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE---DLEALVMPTLRQAA 251 (588)
T ss_dssp CHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH---HHHHHTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH---HHHHHHHHHHHHHc
Confidence 6788889999998888765432 223356788888999999999999999999999865531 22234788899999
Q ss_pred cCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHh
Q 015709 226 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD 305 (402)
Q Consensus 226 ~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~ 305 (402)
++++..+|..|+.+|+.++...++ ......-++.+..+++++ +..+|..|++.+..++.. ..+.......-
T Consensus 252 ~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~~~~~----~~~~~~~~~~~ 322 (588)
T 1b3u_A 252 EDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDC--EAEVRAAASHKVKEFCEN----LSADCRENVIM 322 (588)
T ss_dssp TCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHT----SCTTTHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhCCC--cHHHHHHHHHHHHHHHHH----hChhhhhhHHH
Confidence 888889999999999999875322 123345688899999875 677899999999998853 12221111112
Q ss_pred CCcHHHHHHhhcCCChHHHHHHHHHHHHH
Q 015709 306 RFFLKSVVDLTASADLDLQEKALAAIKNL 334 (402)
Q Consensus 306 ~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L 334 (402)
..+++.+..++..++..+|..++.+|..+
T Consensus 323 ~~l~p~l~~~l~d~~~~vR~~a~~~l~~l 351 (588)
T 1b3u_A 323 SQILPCIKELVSDANQHVKSALASVIMGL 351 (588)
T ss_dssp HTHHHHHHHHHTCSCHHHHHHHHTTGGGG
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 33445555555555555555555444443
No 57
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.25 E-value=2.5e-05 Score=82.12 Aligned_cols=165 Identities=16% Similarity=0.161 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHHHccC-CCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhh
Q 015709 147 LEDSQRALQELLILVE-PIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV 225 (402)
Q Consensus 147 ~e~k~~AL~~L~~Lve-~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL 225 (402)
.+.|..++..+.++.- ..|. ..+++.+++++.+++..+|..+...+..++..+|+... -+++.|.+-+
T Consensus 27 ~~~k~~~~~kli~~~~~G~d~------~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~-----l~~n~l~kdL 95 (591)
T 2vgl_B 27 KEKRKEAVKKVIAAMTVGKDV------SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAI-----MAVNSFVKDC 95 (591)
T ss_dssp HHHHHHHHHHHHHHHHTTCCC------GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHHH-----TTHHHHGGGS
T ss_pred HHHHHHHHHHHHHHHHCCCCh------HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHHH-----HHHHHHHHHc
Confidence 4567677666665432 2222 23678899999999999999999999999887765432 2467888889
Q ss_pred cCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHh
Q 015709 226 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD 305 (402)
Q Consensus 226 ~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~ 305 (402)
+++++.+|..|+.+|+++. .+.....+ ++.+..++.++ ++.+|.+|+.++..++.. +++ .+.+
T Consensus 96 ~~~n~~ir~~AL~~L~~i~--~~~~~~~l-----~~~l~~~L~d~--~~~VRk~A~~al~~i~~~-----~p~---~~~~ 158 (591)
T 2vgl_B 96 EDPNPLIRALAVRTMGCIR--VDKITEYL-----CEPLRKCLKDE--DPYVRKTAAVCVAKLHDI-----NAQ---MVED 158 (591)
T ss_dssp SSSSHHHHHHHHHHHHTCC--SGGGHHHH-----HHHHHHHSSCS--CHHHHHHHHHHHHHHHHS-----SCC---CHHH
T ss_pred CCCCHHHHHHHHHHHHcCC--hHHHHHHH-----HHHHHHHcCCC--ChHHHHHHHHHHHHHHhh-----Chh---hccc
Confidence 9989999999999999984 44433333 46788889875 688999999999999852 344 3334
Q ss_pred CCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCCh
Q 015709 306 RFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT 339 (402)
Q Consensus 306 ~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~ 339 (402)
.++++.+..+|..+|+.++..|+.+|..+.....
T Consensus 159 ~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~ 192 (591)
T 2vgl_B 159 QGFLDSLRDLIADSNPMVVANAVAALSEISESHP 192 (591)
T ss_dssp HHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCC
T ss_pred ccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCC
Confidence 6899999999999999999999999999987653
No 58
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.21 E-value=1.7e-05 Score=74.76 Aligned_cols=182 Identities=9% Similarity=0.042 Sum_probs=129.9
Q ss_pred CCHHHHHHHHHHHHH-ccCC-CCc---hhHHHhcCCHHHHHHhc-CCCCHHHHHHHHHHHHHHhcCC--hHhH-HHHHHc
Q 015709 145 LSLEDSQRALQELLI-LVEP-IDN---ANDLSKLGGLSVLVGQL-NHPDTDIRKISAWILGKASQNN--PLVQ-KQVLEL 215 (402)
Q Consensus 145 ~t~e~k~~AL~~L~~-Lve~-iDn---A~~l~~lGgl~~Li~lL-~s~~~~Ir~~Aa~vLg~~aqNN--p~~Q-~~~le~ 215 (402)
....+|..|++.|.. +++. .+. ..++... +..|...| +.++..+|..|+.+|+.++.+- +..+ ....
T Consensus 28 ~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~--~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~-- 103 (249)
T 2qk1_A 28 SKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNL--LGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVS-- 103 (249)
T ss_dssp SSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHH--HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHH--
T ss_pred CCHHHHHHHHHHHHHHHHhcCCccccCcccHHHH--HHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHH--
Confidence 367889999999999 8853 121 1223332 66777888 7899999999999999999642 2333 2222
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccC
Q 015709 216 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM 295 (402)
Q Consensus 216 g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~ 295 (402)
-.+|.++..+.+....++..+.+|+-+++.+.++....-.-..-++.|...|+++ ++++|..++.+|..++...
T Consensus 104 ~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k--~~~vk~~al~~l~~~~~~~---- 177 (249)
T 2qk1_A 104 LVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK--TPQIRMECTQLFNASMKEE---- 177 (249)
T ss_dssp HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHHHHHc----
Confidence 2689999999988899999999999998886532110000012456777888876 5789999999999988531
Q ss_pred CC--CcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhc
Q 015709 296 HK--VEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 336 (402)
Q Consensus 296 ~~--~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~ 336 (402)
.. ..........+++.+..++...+..+|+.|..++..+..
T Consensus 178 ~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 178 KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 11 111122235799999999999999999999999998863
No 59
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.18 E-value=7.3e-06 Score=89.20 Aligned_cols=180 Identities=14% Similarity=0.082 Sum_probs=128.3
Q ss_pred CHHHHHHHHHHHHHccCCCCchhHHHh--cCCHHHHHHhc-----------CC-----------CCHHHHHHHHHHHHHH
Q 015709 146 SLEDSQRALQELLILVEPIDNANDLSK--LGGLSVLVGQL-----------NH-----------PDTDIRKISAWILGKA 201 (402)
Q Consensus 146 t~e~k~~AL~~L~~Lve~iDnA~~l~~--lGgl~~Li~lL-----------~s-----------~~~~Ir~~Aa~vLg~~ 201 (402)
+.+.+..|++.+..+++.....+.+.. -..++.++..+ .. ++-.+|..|+.+|+.+
T Consensus 269 ~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~l 348 (852)
T 4fdd_A 269 DENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVL 348 (852)
T ss_dssp SHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHH
Confidence 567788898888888875432221211 12356666665 22 2235799999999999
Q ss_pred hcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHH
Q 015709 202 SQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAV 281 (402)
Q Consensus 202 aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~ 281 (402)
+...+. .++. ..+|.+..++.+++..+|..|+++|++++.+.+.....+ -.+.++.|..+++++ ++.+|..|+
T Consensus 349 a~~~~~---~~~~-~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~-l~~~l~~l~~~l~d~--~~~Vr~~a~ 421 (852)
T 4fdd_A 349 ANVYRD---ELLP-HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPY-LPELIPHLIQCLSDK--KALVRSITC 421 (852)
T ss_dssp HHHHGG---GGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGG-HHHHHHHHHHHTTCS--SHHHHHHHH
T ss_pred HHhccH---HHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHH-HHHHHHHHHHHcCCC--CHHHHHHHH
Confidence 986552 2222 367888888988888999999999999998876533322 246789999999876 678999999
Q ss_pred HHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcC
Q 015709 282 SLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 337 (402)
Q Consensus 282 ~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~ 337 (402)
|++..++.... ....... -.++++.+++.|..+++.+++.|+.+|.+++..
T Consensus 422 ~~l~~l~~~~~---~~~~~~~--~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~ 472 (852)
T 4fdd_A 422 WTLSRYAHWVV---SQPPDTY--LKPLMTELLKRILDSNKRVQEAACSAFATLEEE 472 (852)
T ss_dssp HHHHHTHHHHH---HSCTTTT--HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc---cchHHHH--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 99999985310 0111111 136788899999888999999999999999854
No 60
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.11 E-value=9.4e-05 Score=73.12 Aligned_cols=199 Identities=15% Similarity=0.142 Sum_probs=125.4
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCch---hHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh
Q 015709 130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNA---NDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNP 206 (402)
Q Consensus 130 ~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA---~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp 206 (402)
..++...+..+.+.+.+.+.|..|+..+..+++-+... ..+... .++.+..++.++++++|..++++++.++...+
T Consensus 171 ~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~-l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~ 249 (462)
T 1ibr_B 171 NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHF-IMQVVCEATQCPDTRVRVAALQNLVKIMSLYY 249 (462)
T ss_dssp HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHH-HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34666677777766446788888999888876543211 111111 35566677888999999999999999998765
Q ss_pred HhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh------------------hc---H----HHH-------
Q 015709 207 LVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNL------------------AG---Q----EMF------- 254 (402)
Q Consensus 207 ~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~------------------~~---~----~~f------- 254 (402)
..-...+..+.++.++..+++.++.++..|+..++.+++... .. . ..+
T Consensus 250 ~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~ 329 (462)
T 1ibr_B 250 QYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQT 329 (462)
T ss_dssp GGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHH
Confidence 421111111556666666666667777777776666654310 00 0 000
Q ss_pred --------------------------H-------hcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCC-cc
Q 015709 255 --------------------------Y-------VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKV-EP 300 (402)
Q Consensus 255 --------------------------~-------~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~-~~ 300 (402)
. -...++.+...++++ +.++|..|+++++.++.. ..+. ..
T Consensus 330 l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~--~~~~r~aal~~l~~l~~~----~~~~~~~ 403 (462)
T 1ibr_B 330 LTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNP--DWRYRDAAVMAFGCILEG----PEPSQLK 403 (462)
T ss_dssp TTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHTSSS----SCTTTTC
T ss_pred HHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHhcC----CcHHHHH
Confidence 0 001234444455554 577788888888887742 1111 22
Q ss_pred hhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcC
Q 015709 301 PLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 337 (402)
Q Consensus 301 ~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~ 337 (402)
+.+ ..+++.++.+|..+++.+|..|+.+|..++..
T Consensus 404 ~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 404 PLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp TTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 222 56899999999999999999999999999864
No 61
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=98.10 E-value=1.1e-05 Score=78.16 Aligned_cols=137 Identities=16% Similarity=0.209 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHH--hcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHc--CcHHHHH
Q 015709 147 LEDSQRALQELLILVEPIDNANDLSKLGGLSVLVG--QLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL--GALSKLM 222 (402)
Q Consensus 147 ~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~--lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~--g~L~~Ll 222 (402)
.+....||+.|+++.+++...-.|.... +..|-+ |..+..+.+|..|+++||.+-+|||.+-+.|.+. ..+..+.
T Consensus 42 ~~~le~aLD~L~ElSHDi~~G~KI~~~e-f~lL~nL~~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf 120 (315)
T 3qml_C 42 IARLEDSFDRIMEFAHDYKHGYKIITHE-FALLANLSLNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIM 120 (315)
T ss_dssp HHHHHHHHHHHGGGTTSHHHHHHHHHHH-HHHHHHHHHCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHhhhHHHhCc-HHHHHHHHhhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHH
Confidence 3456789999999999999888887642 444444 4466788999999999999999999999988875 2233333
Q ss_pred ----HhhcC---CCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015709 223 ----KMVKS---SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (402)
Q Consensus 223 ----~LL~s---~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~ 289 (402)
.++.. ....+++.-+++|..|+.+. ..| ...|+..|..++.....+..+|+|++.++.++..
T Consensus 121 ~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~----~~F-~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f~ 189 (315)
T 3qml_C 121 AALSNLNDSNHRSSNILIKRYLSILNELPVTS----EDL-PIYSTVVLQNVYERNNKDKQLQIKVLELISKILK 189 (315)
T ss_dssp HHHHHHHCC--CCCHHHHHHHHHHHHHSCCCS----TTC---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHHHHHHHHHhcCh----Hhh-hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHcc
Confidence 33322 23445667799999999874 234 3568889999887543367899999999998874
No 62
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.02 E-value=0.00012 Score=77.50 Aligned_cols=180 Identities=15% Similarity=0.112 Sum_probs=126.1
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHH
Q 015709 132 LIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ 211 (402)
Q Consensus 132 lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~ 211 (402)
...+.++.+.++ +.+.|.-..-.+..+.+.- .++.. -.+..|.+-|+++++.+|..|+++||++. +++.-
T Consensus 71 ~~~~vik~~~s~--~~~~Krl~Yl~~~~~~~~~---~e~~~-l~in~l~kDL~~~n~~vr~lAL~~L~~i~--~~~~~-- 140 (618)
T 1w63_A 71 GQLECLKLIASQ--KFTDKRIGYLGAMLLLDER---QDVHL-LMTNCIKNDLNHSTQFVQGLALCTLGCMG--SSEMC-- 140 (618)
T ss_dssp GHHHHHHHHHSS--SHHHHHHHHHHHHHHCCCC---HHHHH-HHHHHHHHHHSCSSSHHHHHHHHHHHHHC--CHHHH--
T ss_pred hHHHHHHHHcCC--chHHHHHHHHHHHHHhCCC---cHHHH-HHHHHHHHhcCCCCHhHHHHHHHHHHhcC--CHHHH--
Confidence 333444444433 4556655555566655432 22221 14667778889999999999999999998 34322
Q ss_pred HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcc
Q 015709 212 VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ 291 (402)
Q Consensus 212 ~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~ 291 (402)
...++.+.+++.+.++.+|.+|+.|+..+.+.+|.... +-++.|..+|.++ ++.++..|+.++..++..
T Consensus 141 ---~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~l~~lL~D~--d~~V~~~Al~~L~~i~~~- 209 (618)
T 1w63_A 141 ---RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME-----MFLPATKNLLNEK--NHGVLHTSVVLLTEMCER- 209 (618)
T ss_dssp ---HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG-----GGGGGTTTSTTCC--CHHHHHHHHHHHHHHCCS-
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH-----HHHHHHHHHhCCC--CHhHHHHHHHHHHHHHHh-
Confidence 24678999999999999999999999999998886544 4556677888765 678999999999999842
Q ss_pred cccCCCCcchhHHhCCcHHHHHHhhcC---------------CChHHHHHHHHHHHHHhcCC
Q 015709 292 LENMHKVEPPLFRDRFFLKSVVDLTAS---------------ADLDLQEKALAAIKNLLQLR 338 (402)
Q Consensus 292 l~~~~~~~~~~l~~~g~v~~Lv~lL~~---------------~d~dv~E~aL~aL~~L~~~~ 338 (402)
+++....+. .+++.++.+|.. .++-.|-.++.+|..+....
T Consensus 210 ----~~~~~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~ 265 (618)
T 1w63_A 210 ----SPDMLAHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRND 265 (618)
T ss_dssp ----HHHHHHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTC
T ss_pred ----ChHHHHHHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCC
Confidence 222222232 567777776652 47788888888888887654
No 63
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.94 E-value=7.8e-06 Score=68.76 Aligned_cols=87 Identities=18% Similarity=0.232 Sum_probs=72.3
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHH
Q 015709 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFY 255 (402)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~ 255 (402)
++.|+.+|+++++.+|..|+++||.+.. + .+++.|+.+++++++.+|..|+++|+.+- .
T Consensus 44 ~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~---------~a~~~L~~~L~d~~~~VR~~A~~aL~~~~--~-------- 102 (131)
T 1te4_A 44 FEPLLESLSNEDWRIRGAAAWIIGNFQD--E---------RAVEPLIKLLEDDSGFVRSGAARSLEQIG--G-------- 102 (131)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHGGGCS--H---------HHHHHHHHHHHHCCTHHHHHHHHHHHHHC--S--------
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCC--H---------HHHHHHHHHHcCCCHHHHHHHHHHHHHhC--c--------
Confidence 7899999999999999999999999863 2 35899999999888999999999999873 2
Q ss_pred hcCcHHHHHHhhcCCCccHHHHHHHHHHHHH
Q 015709 256 VEAGDLMLQDILGNSSFEIRLHRKAVSLVGD 286 (402)
Q Consensus 256 ~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~ 286 (402)
..+++.|..+++++ +..+|..|+.+|..
T Consensus 103 -~~a~~~L~~~l~d~--~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 103 -ERVRAAMEKLAETG--TGFARKVAVNYLET 130 (131)
T ss_dssp -HHHHHHHHHHTTSC--CTHHHHHHHHHGGG
T ss_pred -HHHHHHHHHHHhCC--CHHHHHHHHHHHHh
Confidence 23578889999865 56788888887653
No 64
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=97.92 E-value=6.8e-05 Score=80.61 Aligned_cols=180 Identities=16% Similarity=0.202 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh-HhHHHHHHcCcHHHHHHhhcC
Q 015709 149 DSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNP-LVQKQVLELGALSKLMKMVKS 227 (402)
Q Consensus 149 ~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp-~~Q~~~le~g~L~~Ll~LL~s 227 (402)
.|..|...|..+++... ..+.. ..++.+...|.++++.+|..|++++|.++.+.+ ..-...+ ...+|.|+..+++
T Consensus 344 ~r~~a~~~l~~l~~~~~--~~~~~-~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d 419 (876)
T 1qgr_A 344 PCKAAGVCLMLLATCCE--DDIVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKD 419 (876)
T ss_dssp HHHHHHHHHHHHHHHHG--GGGHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHCc--HhhHH-HHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCC
Confidence 45566666665554322 11211 245566677888999999999999999998764 3222233 3479999999998
Q ss_pred CCHHHHHHHHHHHHHHhcCChhcH--HHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhccccc----------C
Q 015709 228 SFVEEAVKALYTVSSLIRNNLAGQ--EMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLEN----------M 295 (402)
Q Consensus 228 ~~~~vr~kAl~ALS~LiR~~~~~~--~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~----------~ 295 (402)
++..+|..|+++|+.++...++.. ..+ -...++.|...+.+ +.+++..|++++.+++...... .
T Consensus 420 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~~-l~~~l~~l~~~l~~---~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~ 495 (876)
T 1qgr_A 420 PSVVVRDTAAWTVGRICELLPEAAINDVY-LAPLLQCLIEGLSA---EPRVASNVCWAFSSLAEAAYEAADVADDQEEPA 495 (876)
T ss_dssp SSHHHHHHHHHHHHHHHHHCGGGTSSTTT-HHHHHHHHHHHTTS---CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCC
T ss_pred CCHHHHHHHHHHHHHHHHhCchhcccHHH-HHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhhhcccccccccccc
Confidence 889999999999999998765421 111 12456777788876 3678999999999998641000 0
Q ss_pred CCCcchhHHhCCcHHHHHHhhcCC---ChHHHHHHHHHHHHHhcCC
Q 015709 296 HKVEPPLFRDRFFLKSVVDLTASA---DLDLQEKALAAIKNLLQLR 338 (402)
Q Consensus 296 ~~~~~~~l~~~g~v~~Lv~lL~~~---d~dv~E~aL~aL~~L~~~~ 338 (402)
.....+.+ ..+++.|..++... +..++..++.++..++...
T Consensus 496 ~~~l~~~~--~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~ 539 (876)
T 1qgr_A 496 TYCLSSSF--ELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNS 539 (876)
T ss_dssp CCSSTTTH--HHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTC
T ss_pred chhhhHhH--HHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHC
Confidence 01123333 35778888888764 3578888999998887653
No 65
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.92 E-value=0.00013 Score=82.54 Aligned_cols=192 Identities=10% Similarity=0.077 Sum_probs=133.2
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCc-hhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHH
Q 015709 134 QIAIDDLNNSTLSLEDSQRALQELLILVEPIDN-ANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQV 212 (402)
Q Consensus 134 k~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDn-A~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~ 212 (402)
..+++.+.++ +.+.|..|+..|...+..--. ...-..-..++.|+..|.++++.+|..|+.+|+.++...+.. .
T Consensus 9 ~~lL~~l~s~--d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~---~ 83 (1230)
T 1u6g_C 9 SNLLEKMTSS--DKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY---Q 83 (1230)
T ss_dssp HHHHHHTTCS--SHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH---H
T ss_pred HHHHHhcCCC--CHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHH---H
Confidence 3444444443 567888888888776543100 000111135778889999999999999999999999876541 1
Q ss_pred HHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhc-----HHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q 015709 213 LELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG-----QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDL 287 (402)
Q Consensus 213 le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~-----~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L 287 (402)
+ ...++.|+..+.++++.+|..|..+|+.++...++. .....-..-++.|...+.+. .+..++..|+.++..+
T Consensus 84 ~-~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~-~~~~~~~~al~~l~~~ 161 (1230)
T 1u6g_C 84 V-ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQ-EDVSVQLEALDIMADM 161 (1230)
T ss_dssp H-HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCC-SCHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCC-CchHHHHHHHHHHHHH
Confidence 1 235788888888888888999999999998775542 11112235678888888742 3678999999999999
Q ss_pred hhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCC
Q 015709 288 AKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 338 (402)
Q Consensus 288 ~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~ 338 (402)
+.. ......+.+ ..+++.+...|..++..+|+.|+.+|..++...
T Consensus 162 ~~~----~~~~l~~~~--~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~ 206 (1230)
T 1u6g_C 162 LSR----QGGLLVNFH--PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSC 206 (1230)
T ss_dssp HHH----TCSSCTTTH--HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC
T ss_pred HHH----hHhHHHHHH--HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhc
Confidence 853 122222222 357778888888889999999999999998764
No 66
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.90 E-value=9.7e-05 Score=79.21 Aligned_cols=181 Identities=8% Similarity=0.095 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh-HhHHHHHHcCcHHHHHHhhc
Q 015709 148 EDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNP-LVQKQVLELGALSKLMKMVK 226 (402)
Q Consensus 148 e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp-~~Q~~~le~g~L~~Ll~LL~ 226 (402)
..+..|.+.|..+..... ..+.. ..++.+...+++++..+|..|++++|.++.... ..-...+. ..++.|+..+.
T Consensus 346 ~~r~~a~~~L~~l~~~~~--~~~~~-~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~ 421 (861)
T 2bpt_A 346 NVSMSAGACLQLFAQNCG--NHILE-PVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMN 421 (861)
T ss_dssp HHHHHHHHHHHHHHHHHG--GGGHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGG
T ss_pred cHHHHHHHHHHHHHHHcc--HhHHH-HHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcC
Confidence 455666666666554332 11111 235556667788899999999999999997642 32222332 47899999999
Q ss_pred CCCHHHHHHHHHHHHHHhcCChhcH--HHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccC-CCCcchhH
Q 015709 227 SSFVEEAVKALYTVSSLIRNNLAGQ--EMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM-HKVEPPLF 303 (402)
Q Consensus 227 s~~~~vr~kAl~ALS~LiR~~~~~~--~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~-~~~~~~~l 303 (402)
++++.+|..++|+|+.++...++.. ..+ -...++.|...++++ ++++..|++++.+++..-. .. .....+.+
T Consensus 422 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~~~~l~~l~~~l~~~---~~v~~~a~~al~~l~~~~~-~~~~~~l~~~~ 496 (861)
T 2bpt_A 422 DQSLQVKETTAWCIGRIADSVAESIDPQQH-LPGVVQACLIGLQDH---PKVATNCSWTIINLVEQLA-EATPSPIYNFY 496 (861)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHGGGSCTTTT-HHHHHHHHHHHHTSC---HHHHHHHHHHHHHHHHHHS-SSSSCGGGGGH
T ss_pred CCcHHHHHHHHHHHHHHHHHhhhhcCCHHH-HHHHHHHHHHHhccC---hHHHHHHHHHHHHHHHhcc-cccchhhHHHH
Confidence 8889999999999999887643210 111 123467788888763 6899999999999986310 00 11222333
Q ss_pred HhCCcHHHHHHhhcCCC--hHHHHHHHHHHHHHhcCCh
Q 015709 304 RDRFFLKSVVDLTASAD--LDLQEKALAAIKNLLQLRT 339 (402)
Q Consensus 304 ~~~g~v~~Lv~lL~~~d--~dv~E~aL~aL~~L~~~~~ 339 (402)
..+++.++.++...| .+++..++.++..++....
T Consensus 497 --~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~ 532 (861)
T 2bpt_A 497 --PALVDGLIGAANRIDNEFNARASAFSALTTMVEYAT 532 (861)
T ss_dssp --HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCC
T ss_pred --HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcc
Confidence 356788888888644 7899999999999987643
No 67
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.89 E-value=0.00019 Score=76.97 Aligned_cols=195 Identities=13% Similarity=0.171 Sum_probs=126.0
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCC--chhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHh
Q 015709 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPID--NANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLV 208 (402)
Q Consensus 131 ~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iD--nA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~ 208 (402)
.+|..+.+.+.+. +...|..|+..|..+++... .-..+.. ..++.|+..++++++.+|..|+|++|.++..-+..
T Consensus 369 ~l~~~l~~~l~~~--~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 445 (861)
T 2bpt_A 369 PVLEFVEQNITAD--NWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMNDQSLQVKETTAWCIGRIADSVAES 445 (861)
T ss_dssp HHHHHHHHHTTCS--SHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHcCCC--ChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhh
Confidence 3444444555543 46789999999999987653 1112211 35788889999999999999999999998642210
Q ss_pred --HHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh----hcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHH
Q 015709 209 --QKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNL----AGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVS 282 (402)
Q Consensus 209 --Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~----~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~ 282 (402)
...++ ...+|.|+..++++ +.++..|+++|++++.+.. .....++ ..-++.|..++.+...+..+|..++.
T Consensus 446 ~~~~~~~-~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~-~~il~~L~~~l~~~d~~~~vr~~a~~ 522 (861)
T 2bpt_A 446 IDPQQHL-PGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY-PALVDGLIGAANRIDNEFNARASAFS 522 (861)
T ss_dssp SCTTTTH-HHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH-HHHHHHHHHHHTCSCCGGGHHHHHHH
T ss_pred cCCHHHH-HHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH-HHHHHHHHHHHhCcCcchHHHHHHHH
Confidence 00011 24678899889775 8899999999999987632 2122222 23467888888754334568889999
Q ss_pred HHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcC---------------CChHHHHHHHHHHHHHhcC
Q 015709 283 LVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS---------------ADLDLQEKALAAIKNLLQL 337 (402)
Q Consensus 283 lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~---------------~d~dv~E~aL~aL~~L~~~ 337 (402)
++..++.. ......+.+. .+++.+++.|.. ...+++..++.+|..++..
T Consensus 523 al~~l~~~----~~~~~~~~~~--~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~ 586 (861)
T 2bpt_A 523 ALTTMVEY----ATDTVAETSA--SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRK 586 (861)
T ss_dssp HHHHHHHH----CCGGGHHHHH--HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----cchhhHHHHH--HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999864 1222222222 355556655542 1345677788777777653
No 68
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=97.83 E-value=0.00012 Score=72.28 Aligned_cols=155 Identities=8% Similarity=0.037 Sum_probs=107.6
Q ss_pred CCHHHHHHhcCCC--CHHHHHHHHHHHHHHhcCC-hHhHHHHHHcCcHHHHHHhhcCC--CHHHHHHHHHHHHHHhcCCh
Q 015709 174 GGLSVLVGQLNHP--DTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKSS--FVEEAVKALYTVSSLIRNNL 248 (402)
Q Consensus 174 Ggl~~Li~lL~s~--~~~Ir~~Aa~vLg~~aqNN-p~~Q~~~le~g~L~~Ll~LL~s~--~~~vr~kAl~ALS~LiR~~~ 248 (402)
+.++.|+..+.++ ++.+|..|+.+++.++... +..-..... ..++.++.++.++ +..+|..|+.++++++....
T Consensus 128 ~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~-~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~ 206 (462)
T 1ibr_B 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSN-EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK 206 (462)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHH-HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3566777788787 8999999999999999754 332121221 3788899999987 68899999999999765433
Q ss_pred hcHH--HHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHH
Q 015709 249 AGQE--MFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEK 326 (402)
Q Consensus 249 ~~~~--~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~ 326 (402)
.... .+.. --++.|...+.++ +..+|..++.++..++... .....+.+ ..++++.++..+...+.+++..
T Consensus 207 ~~~~~~~~~~-~l~~~l~~~~~~~--~~~vr~~~~~~l~~l~~~~----~~~~~~~~-~~~l~~~~~~~~~~~~~~v~~~ 278 (462)
T 1ibr_B 207 ANFDKESERH-FIMQVVCEATQCP--DTRVRVAALQNLVKIMSLY----YQYMETYM-GPALFAITIEAMKSDIDEVALQ 278 (462)
T ss_dssp HHHTSHHHHH-HHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHHC----GGGCTTTT-TTTHHHHHHHHHHCSSHHHHHH
T ss_pred HhhhhhHHHH-HHHHHHHHhcCCC--CHHHHHHHHHHHHHHHHHH----HHHHHHHH-HHHHHHHHHHHHcCCchHHHHH
Confidence 2111 1111 1245556666654 6789999999999998531 11122222 1267888888888889999999
Q ss_pred HHHHHHHHhcC
Q 015709 327 ALAAIKNLLQL 337 (402)
Q Consensus 327 aL~aL~~L~~~ 337 (402)
++.++..++..
T Consensus 279 a~~~l~~~~~~ 289 (462)
T 1ibr_B 279 GIEFWSNVCDE 289 (462)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998888754
No 69
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.74 E-value=0.00064 Score=63.88 Aligned_cols=149 Identities=14% Similarity=0.202 Sum_probs=119.5
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHH
Q 015709 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF 254 (402)
Q Consensus 175 gl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f 254 (402)
.+..|+.+|...++.++.+|..+|..+-..-|..-....=...++.++.++.+.+..+..+|+-+|..++.+.|..-+.|
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y 113 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTF 113 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHH
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHH
Confidence 35567778888899999999999999998755555544445689999999999999999999999999999999888888
Q ss_pred HhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHH
Q 015709 255 YVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNL 334 (402)
Q Consensus 255 ~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L 334 (402)
.. -...|.++++++ +.-++..|+-.+.-|-. ..+ ..+++..+..++.++|..++..++.++.++
T Consensus 114 ~K--l~~aL~dlik~~--~~il~~eaae~Lgklkv-----~~~-------~~~V~~~l~sLl~Skd~~vK~agl~~L~ei 177 (265)
T 3b2a_A 114 LK--AAKTLVSLLESP--DDMMRIETIDVLSKLQP-----LED-------SKLVRTYINELVVSPDLYTKVAGFCLFLNM 177 (265)
T ss_dssp HH--HHHHHHHHTTSC--CHHHHHHHHHHHHHCCB-----SCC-------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHhcCC--CchHHHHHHHHhCcCCc-----ccc-------hHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 64 346778888866 45588888888887621 111 235677888899999999999999999999
Q ss_pred hcCCh
Q 015709 335 LQLRT 339 (402)
Q Consensus 335 ~~~~~ 339 (402)
+..++
T Consensus 178 a~~S~ 182 (265)
T 3b2a_A 178 LNSSA 182 (265)
T ss_dssp GGGCS
T ss_pred hcccC
Confidence 98653
No 70
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.73 E-value=0.0011 Score=75.02 Aligned_cols=199 Identities=14% Similarity=0.121 Sum_probs=136.3
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHh-
Q 015709 130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLV- 208 (402)
Q Consensus 130 ~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~- 208 (402)
...+..+++.+.+ .+.+.|..|+..|..+++.... ..+. ..++.|+..|.++++.+|..|+.+|+.++..-+..
T Consensus 47 ~~il~~Ll~~L~d--~~~~vR~~A~~~L~~l~~~~~~-~~~~--~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~ 121 (1230)
T 1u6g_C 47 RKVVKMILKLLED--KNGEVQNLAVKCLGPLVSKVKE-YQVE--TIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPAS 121 (1230)
T ss_dssp HHHHHHHHHHTTC--SSHHHHHHHHHHHHHHHTTSCH-HHHH--HHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHhCCH-HHHH--HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcc
Confidence 3667778888874 3678899999999998876543 2222 24677788888899999999999999999764432
Q ss_pred -----HHHHHHcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHH
Q 015709 209 -----QKQVLELGALSKLMKMVK-SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVS 282 (402)
Q Consensus 209 -----Q~~~le~g~L~~Ll~LL~-s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~ 282 (402)
+.... ...+|.|+..+. +++..++..|+.+++.++..++.....+. ..-++.|...|.++ +..+|..|+.
T Consensus 122 ~~~~~~~~~~-~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~-~~ll~~l~~~L~~~--~~~vR~~a~~ 197 (1230)
T 1u6g_C 122 SGSALAANVC-KKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFH-PSILTCLLPQLTSP--RLAVRKRTII 197 (1230)
T ss_dssp --CCTHHHHH-HHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTH-HHHHHHHGGGGGCS--SHHHHHHHHH
T ss_pred cccchHHHHH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHH-HHHHHHHHHHHcCC--cHHHHHHHHH
Confidence 12222 347899999998 46788999999999999875443222211 23566777778775 5678999999
Q ss_pred HHHHHhhcccc---------------cC-CCCcch---------------hHH--hCCcHHHHHHhhcCCChHHHHHHHH
Q 015709 283 LVGDLAKCQLE---------------NM-HKVEPP---------------LFR--DRFFLKSVVDLTASADLDLQEKALA 329 (402)
Q Consensus 283 lL~~L~~~~l~---------------~~-~~~~~~---------------~l~--~~g~v~~Lv~lL~~~d~dv~E~aL~ 329 (402)
++..++....+ .. +...+. .+. -..+++.+...+..+++++++.++.
T Consensus 198 al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~ 277 (1230)
T 1u6g_C 198 ALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQ 277 (1230)
T ss_dssp HHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 99988753100 00 001110 000 0356777777788788899999999
Q ss_pred HHHHHhcC
Q 015709 330 AIKNLLQL 337 (402)
Q Consensus 330 aL~~L~~~ 337 (402)
++..++..
T Consensus 278 ~l~~l~~~ 285 (1230)
T 1u6g_C 278 AFESFVRR 285 (1230)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 99888765
No 71
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.72 E-value=0.00088 Score=61.62 Aligned_cols=147 Identities=8% Similarity=0.100 Sum_probs=110.2
Q ss_pred HHHHHHHHHHhh-cCCCCHHHHHHHHHHHHHccCCCCchhHHHh--cCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh
Q 015709 130 AQLIQIAIDDLN-NSTLSLEDSQRALQELLILVEPIDNANDLSK--LGGLSVLVGQLNHPDTDIRKISAWILGKASQNNP 206 (402)
Q Consensus 130 ~~lMk~al~~L~-~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~--lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp 206 (402)
.+++......+. ++ ....+..|+..|..++.... ..|.. -.-+++|+..+.++++.+|..|+.++.+++.+.+
T Consensus 55 ~~i~~~L~~~l~kd~--~~~V~~~a~~~l~~la~~l~--~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~ 130 (242)
T 2qk2_A 55 GALVSALKKVITKDS--NVVLVAMAGKCLALLAKGLA--KRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS 130 (242)
T ss_dssp HHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHHHHHG--GGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHhccCC--CHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC
Confidence 355666666664 43 56778889999988886442 22332 2368899999999999999999999999998654
Q ss_pred HhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhc--HHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHH
Q 015709 207 LVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG--QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLV 284 (402)
Q Consensus 207 ~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~--~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL 284 (402)
.. ..+|.|+..+++.++.+|..++..|+.++..+.+. ....+ ..-++.|..+|.++ +.++|..|..++
T Consensus 131 -~~------~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l-~~l~p~l~~~l~D~--~~~VR~~A~~~l 200 (242)
T 2qk2_A 131 -LE------AQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLL-KLLTTSLVKTLNEP--DPTVRDSSAEAL 200 (242)
T ss_dssp -HH------HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH-HHHHHHHHHHHTSS--CHHHHHHHHHHH
T ss_pred -HH------HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHH-HHHHHHHHHHhcCC--ChHHHHHHHHHH
Confidence 21 25788999999988999999999999977665322 12222 35788899999875 678999999999
Q ss_pred HHHhhc
Q 015709 285 GDLAKC 290 (402)
Q Consensus 285 ~~L~~~ 290 (402)
..++..
T Consensus 201 ~~l~~~ 206 (242)
T 2qk2_A 201 GTLIKL 206 (242)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998853
No 72
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=97.69 E-value=0.00072 Score=72.60 Aligned_cols=200 Identities=15% Similarity=0.083 Sum_probs=135.3
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCch--hHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChH
Q 015709 130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNA--NDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPL 207 (402)
Q Consensus 130 ~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA--~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~ 207 (402)
..++...+..+.+++.+.+.+..|+..|..++..+... ........++.+..++.++++++|..|+++++.++...++
T Consensus 171 ~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~ 250 (876)
T 1qgr_A 171 NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ 250 (876)
T ss_dssp HHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHH
Confidence 34555566666666446788889999998877644311 1111112466677788888999999999999999998876
Q ss_pred hHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhc-----------------HHHHHh---cCcHHHHHHhh
Q 015709 208 VQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG-----------------QEMFYV---EAGDLMLQDIL 267 (402)
Q Consensus 208 ~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~-----------------~~~f~~---~gGi~~L~~lL 267 (402)
.-...+....++.++..+.+.++.++..|+..++.+++..... ...+.. ..-++.+...+
T Consensus 251 ~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l 330 (876)
T 1qgr_A 251 YMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL 330 (876)
T ss_dssp GCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHh
Confidence 5344444478899999888888899999999999887642100 000100 12345566666
Q ss_pred cCC-----CccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCC
Q 015709 268 GNS-----SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 338 (402)
Q Consensus 268 ~s~-----~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~ 338 (402)
... ..+.++|..|+.++..++..- . +.+. ..+++.+...+.+++..+|+.++.++..++...
T Consensus 331 ~~~~~d~~~~~~~~r~~a~~~l~~l~~~~----~----~~~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~ 397 (876)
T 1qgr_A 331 TKQDENDDDDDWNPCKAAGVCLMLLATCC----E----DDIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGP 397 (876)
T ss_dssp TCCCSSCCTTCCCHHHHHHHHHHHHHHHH----G----GGGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSS
T ss_pred hcccccccccccHHHHHHHHHHHHHHHHC----c----HhhH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCC
Confidence 421 124467888999999887531 1 1122 256777788888889999999999999998753
No 73
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=97.59 E-value=0.0012 Score=69.69 Aligned_cols=169 Identities=11% Similarity=-0.014 Sum_probs=128.3
Q ss_pred HhhcCCCCHHHHHHHHHHHHHccC-CCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCc
Q 015709 139 DLNNSTLSLEDSQRALQELLILVE-PIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGA 217 (402)
Q Consensus 139 ~L~~~~~t~e~k~~AL~~L~~Lve-~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~ 217 (402)
.|++++ ...|..++..|.++.- ..|. .-|+..+++++.+++..+|....-.+...+..+|+.-.. +
T Consensus 42 ~l~~~~--~~~k~~~l~kli~~~~~G~d~------~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~l-----~ 108 (618)
T 1w63_A 42 SFREED--NTYRCRNVAKLLYMHMLGYPA------HFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLL-----M 108 (618)
T ss_dssp HHTTTC--TTTHHHHHHHHHHHHHTTCCC------GGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHHH-----H
T ss_pred HhhCCC--HHHHHHHHHHHHHHHHcCCCC------cchHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHHH-----H
Confidence 444442 3457777777776442 2332 237888889999999999999999999999888754332 4
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCC
Q 015709 218 LSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHK 297 (402)
Q Consensus 218 L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~ 297 (402)
+..|.+-++++++.+|.-|+.+||++. .+... ...++.+..+|.++ ++.+|++|+.++..+... ++
T Consensus 109 in~l~kDL~~~n~~vr~lAL~~L~~i~--~~~~~-----~~l~~~l~~~L~~~--~~~VRk~A~~al~~l~~~-----~p 174 (618)
T 1w63_A 109 TNCIKNDLNHSTQFVQGLALCTLGCMG--SSEMC-----RDLAGEVEKLLKTS--NSYLRKKAALCAVHVIRK-----VP 174 (618)
T ss_dssp HHHHHHHHSCSSSHHHHHHHHHHHHHC--CHHHH-----HHHHHHHHHHHHSC--CHHHHHHHHHHHHHHHHH-----CG
T ss_pred HHHHHHhcCCCCHhHHHHHHHHHHhcC--CHHHH-----HHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHH-----Ch
Confidence 677888888888999999999999985 23211 24567888889876 678999999999999853 34
Q ss_pred CcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCCh
Q 015709 298 VEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT 339 (402)
Q Consensus 298 ~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~ 339 (402)
+.. .++++.+..+|...|+.++-.|+.+|..+....+
T Consensus 175 ~~v-----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~ 211 (618)
T 1w63_A 175 ELM-----EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSP 211 (618)
T ss_dssp GGG-----GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHH
T ss_pred HHH-----HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhCh
Confidence 332 2688888999999999999999999999987643
No 74
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.57 E-value=0.0037 Score=66.25 Aligned_cols=175 Identities=15% Similarity=0.034 Sum_probs=130.3
Q ss_pred HHhh-cCCCCHHHHHHHHHHHHHccC-CCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHc
Q 015709 138 DDLN-NSTLSLEDSQRALQELLILVE-PIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL 215 (402)
Q Consensus 138 ~~L~-~~~~t~e~k~~AL~~L~~Lve-~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~ 215 (402)
..++ ++..+...|..++..+.++.- ..|. .-|+..+++++.+++..+|..+.-.+...+..+|+.-..
T Consensus 42 ~~~~~~~~~~~~~k~~~l~Kli~l~~~G~d~------s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L---- 111 (621)
T 2vgl_A 42 SKFKGDKALDGYSKKKYVCKLLFIFLLGHDI------DFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRL---- 111 (621)
T ss_dssp HHHHSSSCCCHHHHHHHHHHHHHHHHHSCCC------CSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHH----
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHcCCCC------chhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHH----
Confidence 3444 334567788888877776542 2221 247899999999999999999999999999988754322
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccC
Q 015709 216 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM 295 (402)
Q Consensus 216 g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~ 295 (402)
++..+.+=++++++-+|.-|+.+||++. .+.-.+ .-++.+..+|.+.+.++.+|++|+.++..+...
T Consensus 112 -~iN~l~kDl~~~n~~ir~lALr~L~~i~--~~e~~~-----~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~----- 178 (621)
T 2vgl_A 112 -INNAIKNDLASRNPTFMGLALHCIANVG--SREMAE-----AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRT----- 178 (621)
T ss_dssp -HHHHHHHHHHSCCHHHHHHHHHHHHHHC--CHHHHH-----HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHH-----
T ss_pred -HHHHHHHhcCCCCHHHHHHHHHHhhccC--CHHHHH-----HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh-----
Confidence 3566777777888999999999999983 343222 345677888822223788999999999999852
Q ss_pred CCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCC
Q 015709 296 HKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 338 (402)
Q Consensus 296 ~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~ 338 (402)
+|+..+ ..++++.+.++|...|+.++..|+.++..++...
T Consensus 179 ~p~~~~---~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~ 218 (621)
T 2vgl_A 179 SPDLVP---MGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKN 218 (621)
T ss_dssp CGGGCC---CCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC
T ss_pred ChhhcC---chhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhC
Confidence 333322 2589999999999889999999999999998754
No 75
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.52 E-value=0.0036 Score=61.54 Aligned_cols=154 Identities=14% Similarity=0.092 Sum_probs=119.3
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHh-
Q 015709 178 VLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYV- 256 (402)
Q Consensus 178 ~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~- 256 (402)
.++.-|.+.+..-+..|..-|..+.|..+..-..|++.+|+..|+++..+.+.+...-++.|+.++.- +..+...++.
T Consensus 122 ~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~-~v~Gm~gvvs~ 200 (339)
T 3dad_A 122 AILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLML-FVDGMLGVVAH 200 (339)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTT-SHHHHHHHHHC
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHh-ccccccchhCC
Confidence 44555556677778899999999777777778889999999999999999888999999999999874 6777877775
Q ss_pred cCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHh----------CCcHHHHHHhhc---CCChHH
Q 015709 257 EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD----------RFFLKSVVDLTA---SADLDL 323 (402)
Q Consensus 257 ~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~----------~g~v~~Lv~lL~---~~d~dv 323 (402)
...+..|..++.+. +..+.+.|+.+|..++.. .+.....+.+ .-....|+.+|. +.|.++
T Consensus 201 ~~fI~~lyslv~s~--~~~V~k~AL~LL~v~V~~-----se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~el 273 (339)
T 3dad_A 201 SDTIQWLYTLCASL--SRLVVKTALKLLLVFVEY-----SENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPEL 273 (339)
T ss_dssp HHHHHHHHHGGGCS--CHHHHHHHHHHHHHHHHH-----CGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHH
T ss_pred HHHHHHHHHHHcCc--cHHHHHHHHHHHHHHHcc-----CcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHH
Confidence 35778888888863 678899999999999864 2222222221 123678999997 679999
Q ss_pred HHHHHHHHHHHhcCCh
Q 015709 324 QEKALAAIKNLLQLRT 339 (402)
Q Consensus 324 ~E~aL~aL~~L~~~~~ 339 (402)
+..++..+-.++...+
T Consensus 274 q~~amtLIN~lL~~ap 289 (339)
T 3dad_A 274 LVYTVTLINKTLAALP 289 (339)
T ss_dssp HHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHhcCC
Confidence 9999988888776643
No 76
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.48 E-value=0.0049 Score=61.23 Aligned_cols=185 Identities=11% Similarity=0.078 Sum_probs=125.4
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCC-CchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC
Q 015709 127 PSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPI-DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNN 205 (402)
Q Consensus 127 ~~d~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~i-DnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNN 205 (402)
++....++++ ..++++..++.-+..++..+.++.-.= +..... -...+..+++++.+++..+|...--.+-.++..+
T Consensus 22 ~~k~~v~qe~-r~fn~~~~~~~kc~~~l~kll~l~~~G~~f~~~e-~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~ 99 (355)
T 3tjz_B 22 LEKSAVLQEA-RVFNETPINPRKCAHILTKILYLINQGEHLGTTE-ATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIA 99 (355)
T ss_dssp CCHHHHHHHG-GGTTSSSCCHHHHHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTS
T ss_pred chHHHHHHHH-HHhcCCCCcHHHHHHHHHHHHHHHHCCCCCchhH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCH
Confidence 3444555553 566666666555455666666655332 211111 1234566788889999999998888888887653
Q ss_pred hHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHH
Q 015709 206 PLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVG 285 (402)
Q Consensus 206 p~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~ 285 (402)
+ +.++ +...|.+=++++++-+|..|+.+++++.- +.-.+. ..+.+.++|.+. ++.+|++|+....
T Consensus 100 ~---e~iL---v~Nsl~kDl~~~N~~iR~lALRtL~~I~~--~~m~~~-----l~~~lk~~L~d~--~pyVRk~A~l~~~ 164 (355)
T 3tjz_B 100 E---DVII---VTSSLTKDMTGKEDSYRGPAVRALCQITD--STMLQA-----IERYMKQAIVDK--VPSVSSSALVSSL 164 (355)
T ss_dssp S---CGGG---GHHHHHHHHHSSCHHHHHHHHHHHHHHCC--TTTHHH-----HHHHHHHHHTCS--SHHHHHHHHHHHH
T ss_pred H---HHHH---HHHHHHhhcCCCcHhHHHHHHHHHhcCCC--HHHHHH-----HHHHHHHHcCCC--CHHHHHHHHHHHH
Confidence 3 3332 56777788888888889999999998842 232222 345678888876 6778999999998
Q ss_pred HHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCC
Q 015709 286 DLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 338 (402)
Q Consensus 286 ~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~ 338 (402)
.|+. ..| .+++ +|+..+-+++...++-++-+|+.+|..+....
T Consensus 165 kL~~-----~~p----e~v~-~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d 207 (355)
T 3tjz_B 165 HLLK-----CSF----DVVK-RWVNEAQEAASSDNIMVQYHALGLLYHVRKND 207 (355)
T ss_dssp HHTT-----TCH----HHHH-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHhc-----cCH----HHHH-HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc
Confidence 8873 122 2333 68889999998889999988888888887643
No 77
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.31 E-value=0.0052 Score=57.87 Aligned_cols=180 Identities=12% Similarity=0.039 Sum_probs=118.6
Q ss_pred CHHHHHHHHHHHHHccCCCCc--h--hHHHhcCCHHHH-HHhcCCCCHHHHHHHHHHHHHHhcCChH-----hHHHHHHc
Q 015709 146 SLEDSQRALQELLILVEPIDN--A--NDLSKLGGLSVL-VGQLNHPDTDIRKISAWILGKASQNNPL-----VQKQVLEL 215 (402)
Q Consensus 146 t~e~k~~AL~~L~~Lve~iDn--A--~~l~~lGgl~~L-i~lL~s~~~~Ir~~Aa~vLg~~aqNNp~-----~Q~~~le~ 215 (402)
.=..|..|++.|..++..... . ..+...+.+..+ -..+..+|..++..|+.++..++..-.. ......-.
T Consensus 22 ~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~ 101 (278)
T 4ffb_C 22 LWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLIS 101 (278)
T ss_dssp SHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHH
Confidence 346889999999888764321 1 122234444444 4578899999999999999999864221 11111223
Q ss_pred CcHHHHHH-hhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhccccc
Q 015709 216 GALSKLMK-MVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLEN 294 (402)
Q Consensus 216 g~L~~Ll~-LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~ 294 (402)
..+|.|+. .+.+....++..|+.++..++....+... .++.+...+++. +++++..++..|..++..-
T Consensus 102 ~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~------~~e~l~~~l~~K--npkv~~~~l~~l~~~l~~f--- 170 (278)
T 4ffb_C 102 TWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ------SVELVIPFFEKK--LPKLIAAAANCVYELMAAF--- 170 (278)
T ss_dssp HHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH------HHHHHGGGGGCS--CHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH------HHHHHHHHHhcc--CHHHHHHHHHHHHHHHHHh---
Confidence 46788885 47777888899998888887754332221 135566677765 7899999999999887531
Q ss_pred CCCCcc-hhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcC
Q 015709 295 MHKVEP-PLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 337 (402)
Q Consensus 295 ~~~~~~-~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~ 337 (402)
..... ....-..+++.+..+|...|.+||+.|..++..+...
T Consensus 171 -g~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 171 -GLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp -TTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred -CCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 11111 1111124566788889999999999999999988765
No 78
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.12 E-value=0.012 Score=55.17 Aligned_cols=155 Identities=8% Similarity=0.078 Sum_probs=109.7
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCC--chh-HHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh
Q 015709 130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPID--NAN-DLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNP 206 (402)
Q Consensus 130 ~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iD--nA~-~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp 206 (402)
.+++..+...+.+. .....+..|+..|..+++... .-. .++. -.+|+++..++...+.||..|..++-+++.+-+
T Consensus 59 ~~~~~~L~~~l~~D-~n~~v~~~A~~al~~la~~l~~~~f~~~y~~-~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~ 136 (249)
T 2qk1_A 59 SNLLGIYGHIIQKD-ANIQAVALAAQSVELICDKLKTPGFSKDYVS-LVFTPLLDRTKEKKPSVIEAIRKALLTICKYYD 136 (249)
T ss_dssp HHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHHHHHCTTTSCHHHHH-HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHhcccccccHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcc
Confidence 45666666667322 245667888888888775432 111 2222 258899999999999999999999999987542
Q ss_pred HhHHHH-HHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHH--h-cCcHHHHHHhhcCCCccHHHHHHHHH
Q 015709 207 LVQKQV-LELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFY--V-EAGDLMLQDILGNSSFEIRLHRKAVS 282 (402)
Q Consensus 207 ~~Q~~~-le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~--~-~gGi~~L~~lL~s~~~d~klq~kA~~ 282 (402)
.....- + ...++.|+..+++.++.+|..++..|+.++...+.....|. - -.-++.|..++.+. +..+|..|..
T Consensus 137 ~~~~~~~l-~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~--~~~VR~aA~~ 213 (249)
T 2qk1_A 137 PLASSGRN-EDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDT--QPAIRTIGFE 213 (249)
T ss_dssp TTCTTCTT-HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCS--SHHHHHHHHH
T ss_pred ccccCCcH-HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHH
Confidence 110000 0 12678899999998899999999999999987664323332 2 46889999999875 6779999999
Q ss_pred HHHHHhh
Q 015709 283 LVGDLAK 289 (402)
Q Consensus 283 lL~~L~~ 289 (402)
++..++.
T Consensus 214 ~l~~i~~ 220 (249)
T 2qk1_A 214 SFAILIK 220 (249)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999885
No 79
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.12 E-value=0.0075 Score=63.91 Aligned_cols=129 Identities=12% Similarity=0.125 Sum_probs=98.0
Q ss_pred CHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhh
Q 015709 146 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV 225 (402)
Q Consensus 146 t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL 225 (402)
+.+.|..+.-.+..+.+.- .++.-+ .+..+.+-|+++++-+|..|..++|++. +|+.-+ ..+|.+.+++
T Consensus 87 ~~~~Krl~YL~l~~~~~~~---~e~~~L-~iN~l~kDl~~~n~~ir~lALr~L~~i~--~~e~~~-----~l~~~v~~~l 155 (621)
T 2vgl_A 87 RYTEKQIGYLFISVLVNSN---SELIRL-INNAIKNDLASRNPTFMGLALHCIANVG--SREMAE-----AFAGEIPKIL 155 (621)
T ss_dssp CHHHHHHHHHHHHHSCCCC---HHHHHH-HHHHHHHHHHSCCHHHHHHHHHHHHHHC--CHHHHH-----HHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHccCC---cHHHHH-HHHHHHHhcCCCCHHHHHHHHHHhhccC--CHHHHH-----HHHHHHHHHH
Confidence 4677777777777766542 222211 3456667788999999999999999996 455333 3568899999
Q ss_pred --cCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015709 226 --KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (402)
Q Consensus 226 --~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~ 290 (402)
.+.++-+|.+|+.|+..+.+.+|.... ..+-++.|..+|.++ ++.++..|+.++..++..
T Consensus 156 ~~~d~~~~VRK~A~~al~kl~~~~p~~~~---~~~~~~~l~~lL~d~--d~~V~~~a~~~l~~i~~~ 217 (621)
T 2vgl_A 156 VAGDTMDSVKQSAALCLLRLYRTSPDLVP---MGDWTSRVVHLLNDQ--HLGVVTAATSLITTLAQK 217 (621)
T ss_dssp HCSSSCHHHHHHHHHHHHHHHHHCGGGCC---CCSCHHHHHHHTTCS--CHHHHHHHHHHHHHHHHH
T ss_pred hCCCCCHHHHHHHHHHHHHHHHhChhhcC---chhHHHHHHHHhCCC--CccHHHHHHHHHHHHHHh
Confidence 778899999999999999998876433 246789999999765 678999999999999853
No 80
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.08 E-value=0.03 Score=51.04 Aligned_cols=140 Identities=13% Similarity=0.145 Sum_probs=100.7
Q ss_pred CCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHH
Q 015709 184 NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLML 263 (402)
Q Consensus 184 ~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L 263 (402)
++..-.+-..-++.+|+++.-||+.-. +.+|.|..-..-.++.+|..-.|+|.-+.|.||..... .+.-+
T Consensus 80 ksEaIpltqeIa~a~G~la~i~Pe~v~-----~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~-----v~rdi 149 (253)
T 2db0_A 80 KSEAIPLTQEIAKAFGQMAKEKPELVK-----SMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMAS-----IVRDF 149 (253)
T ss_dssp HCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHH-----HHHHH
T ss_pred hcccCchHHHHHHHHhHHHHhCHHHHH-----hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHH-----HHHHH
Confidence 345555556667788888887776433 35677887777788889999999999999999874443 34556
Q ss_pred HHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChhhHH
Q 015709 264 QDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEAL 343 (402)
Q Consensus 264 ~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~~~ 343 (402)
..++.|++. .=|.-|+.+|+.|..+ ....+ .-+++.|..+|..+|.-+|-.+..+|..++...+.-|.
T Consensus 150 ~smltskd~--~Dkl~aLnFi~alGen--------~~~yv--~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRk 217 (253)
T 2db0_A 150 MSMLSSKNR--EDKLTALNFIEAMGEN--------SFKYV--NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRK 217 (253)
T ss_dssp HHHTSCSSH--HHHHHHHHHHHTCCTT--------THHHH--GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHhcCCCh--HHHHHHHHHHHHHhcc--------Ccccc--CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHH
Confidence 777887643 2355666666665422 22222 35789999999999999999999999999998776555
Q ss_pred HH
Q 015709 344 VL 345 (402)
Q Consensus 344 ~~ 345 (402)
.+
T Consensus 218 ii 219 (253)
T 2db0_A 218 VV 219 (253)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 81
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=96.86 E-value=0.073 Score=53.18 Aligned_cols=169 Identities=17% Similarity=0.119 Sum_probs=115.7
Q ss_pred HHHHHHHHcc--CCCCchhHHHhcCCHHHHHHhcC-----------CCCHHHHHHHHHHHHHHhcCChHhHHHHHHc-Cc
Q 015709 152 RALQELLILV--EPIDNANDLSKLGGLSVLVGQLN-----------HPDTDIRKISAWILGKASQNNPLVQKQVLEL-GA 217 (402)
Q Consensus 152 ~AL~~L~~Lv--e~iDnA~~l~~lGgl~~Li~lL~-----------s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~-g~ 217 (402)
..|..|.-.+ .+++.-..|. .+|+..|+..|. ..+..++.....||..+. ||..--+.++.+ .+
T Consensus 86 ~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalm-N~~~G~~~vl~~~~~ 163 (383)
T 3eg5_B 86 SCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEG 163 (383)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHT-SSHHHHHHHHTCSSH
T ss_pred HHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHh-cchhhHHHHHcChHH
Confidence 4466666544 4578889998 899999998884 124578889999999998 566555556654 68
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh-hc-HHHHH----------hcCcHHHHHHhhcCCCccHHHHHHHHHHHH
Q 015709 218 LSKLMKMVKSSFVEEAVKALYTVSSLIRNNL-AG-QEMFY----------VEAGDLMLQDILGNSSFEIRLHRKAVSLVG 285 (402)
Q Consensus 218 L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~-~~-~~~f~----------~~gGi~~L~~lL~s~~~d~klq~kA~~lL~ 285 (402)
+..|...+.+..+.++.-|+--|+.+|.... .+ ...++ +..-+..++..|.+. .+..++..++.+|.
T Consensus 164 i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~-~~~e~~~~~m~lIN 242 (383)
T 3eg5_B 164 ILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG-TSIALKVGCLQLIN 242 (383)
T ss_dssp HHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTT-SCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHcc-CcHHHHHHHHHHHH
Confidence 8999999999888888888888877665432 22 22222 223578888988875 36778889999999
Q ss_pred HHhhcccccCCC----CcchhHHhCCcHHHHHHhhcCCChHHHHH
Q 015709 286 DLAKCQLENMHK----VEPPLFRDRFFLKSVVDLTASADLDLQEK 326 (402)
Q Consensus 286 ~L~~~~l~~~~~----~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~ 326 (402)
.++... .+. ..+..|...|+.+.+-.+=..++.++..+
T Consensus 243 ~li~~~---~dl~~R~~lR~ef~~~Gl~~il~~lr~~~~~~L~~Q 284 (383)
T 3eg5_B 243 ALITPA---EELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQ 284 (383)
T ss_dssp HHHTTC---CCHHHHHHHHHHHHHTTHHHHHHHHTTSCCHHHHHH
T ss_pred HHHcCC---CCHHHHHHHHHHHHHCChHHHHHHHhcCCChhHHHH
Confidence 988531 111 23455667888887777433345554443
No 82
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=96.70 E-value=0.21 Score=45.53 Aligned_cols=200 Identities=17% Similarity=0.191 Sum_probs=133.3
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHcc---CCCCchhHHHh-------------cCCH
Q 015709 114 QMEIKELMEKLKTPSDAQLIQIAIDDLNNSTL-SLEDSQRALQELLILV---EPIDNANDLSK-------------LGGL 176 (402)
Q Consensus 114 ~~~L~ea~~~l~~~~d~~lMk~al~~L~~~~~-t~e~k~~AL~~L~~Lv---e~iDnA~~l~~-------------lGgl 176 (402)
++++++++..+.. |--..-|.++.++.+-.. -+|-...++..|--++ |.|+-...+.+ -+.+
T Consensus 31 ~~~l~~lI~~LDD-DlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v~~vV 109 (253)
T 2db0_A 31 ESVLKKLIELLDD-DLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMI 109 (253)
T ss_dssp HHHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHhcc-HHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHHHhhH
Confidence 4566777765421 223556666666644221 1233444444444432 33433222222 1234
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHh
Q 015709 177 SVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYV 256 (402)
Q Consensus 177 ~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~ 256 (402)
|.+..-+.-.++.+|..-..+|+.++.+||..-.. .+.-+..|+.|.+..-|..|+.-|+++--+++.-..
T Consensus 110 p~lfanyrigd~kikIn~~yaLeeIaranP~l~~~-----v~rdi~smltskd~~Dkl~aLnFi~alGen~~~yv~---- 180 (253)
T 2db0_A 110 PVLFANYRIGDEKTKINVSYALEEIAKANPMLMAS-----IVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVN---- 180 (253)
T ss_dssp HHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHH-----HHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTHHHHG----
T ss_pred HHHHHHHhcCCccceecHHHHHHHHHHhChHHHHH-----HHHHHHHHhcCCChHHHHHHHHHHHHHhccCccccC----
Confidence 55555566689999999999999999999976554 457788999988877789999999998776654333
Q ss_pred cCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhc
Q 015709 257 EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 336 (402)
Q Consensus 257 ~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~ 336 (402)
-=++.|..+|.++ |.-+|.-|+-.+.+++. .++..++. +..-++=++..+..++.++-.+|..|+-
T Consensus 181 -PfLprL~aLL~D~--deiVRaSaVEtL~~lA~-----~npklRki------i~~kl~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 181 -PFLPRIINLLHDG--DEIVRASAVEALVHLAT-----LNDKLRKV------VIKRLEELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp -GGHHHHHGGGGCS--SHHHHHHHHHHHHHHHT-----SCHHHHHH------HHHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred -cchHHHHHHHcCc--chhhhHHHHHHHHHHHH-----cCHHHHHH------HHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 3468889999986 66799999999999995 24444433 3334455666778899999999988875
Q ss_pred C
Q 015709 337 L 337 (402)
Q Consensus 337 ~ 337 (402)
.
T Consensus 247 ~ 247 (253)
T 2db0_A 247 L 247 (253)
T ss_dssp C
T ss_pred H
Confidence 5
No 83
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=96.53 E-value=0.28 Score=48.50 Aligned_cols=157 Identities=8% Similarity=0.010 Sum_probs=108.9
Q ss_pred HhHHHHHHHHHHc-CCCC-HHHHH----HHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCC
Q 015709 112 KRQMEIKELMEKL-KTPS-DAQLI----QIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH 185 (402)
Q Consensus 112 ~r~~~L~ea~~~l-~~~~-d~~lM----k~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s 185 (402)
+.++-+++++-.+ .|.+ ....| -..++.+.++ +.+.|.-..--+..+....+.+- =....|.+-+++
T Consensus 43 kc~~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~--d~~lKrLvYLyl~~~~~~~~e~i-----Lv~Nsl~kDl~~ 115 (355)
T 3tjz_B 43 KCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSN--DPTLRRMCYLTIKEMSCIAEDVI-----IVTSSLTKDMTG 115 (355)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCC--CHHHHHHHHHHHHHHTTTSSCGG-----GGHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHhCCCHHHHH-----HHHHHHHhhcCC
Confidence 4566777776655 2322 11122 2233344443 45666665555655555433321 146677888899
Q ss_pred CCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHH
Q 015709 186 PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQD 265 (402)
Q Consensus 186 ~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~ 265 (402)
+++-+|..|.++++++.. |+.-+. ..+.+-+.+.+.++-||.+|+.+...+++.+|...+ +.+.-+.+
T Consensus 116 ~N~~iR~lALRtL~~I~~--~~m~~~-----l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~-----~~~~~l~~ 183 (355)
T 3tjz_B 116 KEDSYRGPAVRALCQITD--STMLQA-----IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVK-----RWVNEAQE 183 (355)
T ss_dssp SCHHHHHHHHHHHHHHCC--TTTHHH-----HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHH
T ss_pred CcHhHHHHHHHHHhcCCC--HHHHHH-----HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHH-----HHHHHHHH
Confidence 999999999999999974 433332 457788899999999999999999999998887543 56778888
Q ss_pred hhcCCCccHHHHHHHHHHHHHHhh
Q 015709 266 ILGNSSFEIRLHRKAVSLVGDLAK 289 (402)
Q Consensus 266 lL~s~~~d~klq~kA~~lL~~L~~ 289 (402)
++.+. ++-++..|+.+++.+..
T Consensus 184 ll~d~--n~~V~~~Al~lL~ei~~ 205 (355)
T 3tjz_B 184 AASSD--NIMVQYHALGLLYHVRK 205 (355)
T ss_dssp HTTCS--SHHHHHHHHHHHHHHHT
T ss_pred HhcCC--CccHHHHHHHHHHHHHh
Confidence 88875 57788999999999874
No 84
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=96.19 E-value=0.32 Score=49.94 Aligned_cols=241 Identities=12% Similarity=0.097 Sum_probs=137.6
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCC----CchhHHHhcCCHH--HHHHhcCCCCHHHHHHHHHHHHHHhcCC
Q 015709 132 LIQIAIDDLNNSTLSLEDSQRALQELLILVEPI----DNANDLSKLGGLS--VLVGQLNHPDTDIRKISAWILGKASQNN 205 (402)
Q Consensus 132 lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~i----DnA~~l~~lGgl~--~Li~lL~s~~~~Ir~~Aa~vLg~~aqNN 205 (402)
..+-.+..+.+.. ..|-..-.|--+.+++... ..+.-|++..... ++..++..+++-....|+.+++-+++++
T Consensus 78 ~~~~~l~lL~~~~-~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~~ 156 (480)
T 1ho8_A 78 TLIPLIHLLSTSD-NEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNG 156 (480)
T ss_dssp THHHHHHHHHSCC-CHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHhhcC-hHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhccC
Confidence 4455666666643 3455555555566666542 2234455543322 3334555566667788888888888776
Q ss_pred hHhHHHHHHcCcHH--HHHHhhcCC-CHHHHHHHHHHHHHHhcCChhcHHHHHhcCc--HHHHHHhhc----C-------
Q 015709 206 PLVQKQVLELGALS--KLMKMVKSS-FVEEAVKALYTVSSLIRNNLAGQEMFYVEAG--DLMLQDILG----N------- 269 (402)
Q Consensus 206 p~~Q~~~le~g~L~--~Ll~LL~s~-~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gG--i~~L~~lL~----s------- 269 (402)
+..++..-. .+. -++..|.+. +...+--++.+++.|+|. +..+..|.+++| ++.+..++. +
T Consensus 157 ~~~~~~l~~--l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~-~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~ 233 (480)
T 1ho8_A 157 LHNVKLVEK--LLKNNNLINILQNIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIV 233 (480)
T ss_dssp TCCHHHHHH--HHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC--------
T ss_pred CccHhHHHH--HhhhHHHHHHhccccCCchHHHHHHHHHHHhcc-hhHHHHHHHcccchhHHHHHHHHHhhccccccccc
Confidence 653332211 122 344455542 344455788899999985 566888887766 444543322 1
Q ss_pred ----CCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcH--HHHHHhhcCC-ChHHHHHHHHHHHHHhcCChh-h
Q 015709 270 ----SSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFL--KSVVDLTASA-DLDLQEKALAAIKNLLQLRTT-E 341 (402)
Q Consensus 270 ----~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v--~~Lv~lL~~~-d~dv~E~aL~aL~~L~~~~~~-~ 341 (402)
.+....++-.+++++.-|.. ++...+.+...+++ ..|++.++.. -..+..-++.++.+|+..... .
T Consensus 234 ~~~~~~~~~Ql~Y~~ll~iWlLSF------~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~ 307 (480)
T 1ho8_A 234 ATNSNHLGIQLQYHSLLLIWLLTF------NPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQH 307 (480)
T ss_dssp -----CCHHHHHHHHHHHHHHHTT------SHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTH
T ss_pred cccCCCccHHHHHHHHHHHHHHHc------CHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhh
Confidence 11246678888888887765 34566677777654 5666767643 678888889999999987521 1
Q ss_pred ----HHHHHhcCCcHHHHHHHHHHhHHhhhhhhHhhhHHHHHHHHHHHHHHH
Q 015709 342 ----ALVLKDFCGLDTALERLRQQLQEVMLEEDQRDYAMDVEALRREVELIF 389 (402)
Q Consensus 342 ----~~~~~~~~GL~~~L~~L~~~~~~l~~~e~~~~y~~~l~~~~~e~~~~~ 389 (402)
++.+- .+++.+.++.|+.+ -..+| |-.+|++.+.+..+..+
T Consensus 308 ~~~~~~~~~-~~~~l~~l~~L~~r---k~~De---dl~edl~~L~e~L~~~~ 352 (480)
T 1ho8_A 308 KKVIKQLLL-LGNALPTVQSLSER---KYSDE---ELRQDISNLKEILENEY 352 (480)
T ss_dssp HHHHHHHHH-HHCHHHHHHHHHSS---CCSSH---HHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHH-HccchHHHHHHhhC---CCCcH---HHHHHHHHHHHHHHHHH
Confidence 22222 23444555554221 01122 34556666666655553
No 85
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=95.92 E-value=0.14 Score=48.81 Aligned_cols=168 Identities=12% Similarity=0.055 Sum_probs=111.0
Q ss_pred CHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHh----cCCCCHHHHHHHHHHHHHHhc----CChHhHHHHHHcCc
Q 015709 146 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQ----LNHPDTDIRKISAWILGKASQ----NNPLVQKQVLELGA 217 (402)
Q Consensus 146 t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~l----L~s~~~~Ir~~Aa~vLg~~aq----NNp~~Q~~~le~g~ 217 (402)
+...+..|++.|...+++.. ..-+.. +..++.. +.++|+.+-..++.+|..+.. .+....+.-. .-.
T Consensus 59 d~k~~~~ale~L~~~l~~~~-~~~~~~---lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea-~~~ 133 (266)
T 2of3_A 59 DFKQHLAALDSLVRLADTSP-RSLLSN---SDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEV-SAF 133 (266)
T ss_dssp CHHHHHHHHHHHHHHHHHCH-HHHHHT---HHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHH-HHH
T ss_pred CHHHHHHHHHHHHHHhhhCh-HHHHHH---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHH-HHH
Confidence 55788889999888765421 111221 2223332 236799999999999888753 2211111110 125
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCC
Q 015709 218 LSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHK 297 (402)
Q Consensus 218 L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~ 297 (402)
+|.|+.-+-+..+.+|.++-..+-.+..-+|+. .-++.+...+++. +.|.|..++..+.++.... ..
T Consensus 134 lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~-------~v~~~l~~g~ksK--N~R~R~e~l~~l~~li~~~----G~ 200 (266)
T 2of3_A 134 VPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL-------KMTPMLLDALKSK--NARQRSECLLVIEYYITNA----GI 200 (266)
T ss_dssp HHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH-------HHHHHHHHGGGCS--CHHHHHHHHHHHHHHHHHH----CS
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHH-------HHHHHHHHHHccC--CHHHHHHHHHHHHHHHHhc----CC
Confidence 899999888877888876655554443323331 1345677788876 6899999999999998642 11
Q ss_pred CcchhHHhCCcH---HHHHHhhcCCChHHHHHHHHHHHHHhcC
Q 015709 298 VEPPLFRDRFFL---KSVVDLTASADLDLQEKALAAIKNLLQL 337 (402)
Q Consensus 298 ~~~~~l~~~g~v---~~Lv~lL~~~d~dv~E~aL~aL~~L~~~ 337 (402)
. ....+ +.+..++...|..+|+.|+.++..+...
T Consensus 201 ~------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~ 237 (266)
T 2of3_A 201 S------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKF 237 (266)
T ss_dssp G------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred C------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 1 13467 9999999999999999999999977654
No 86
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=95.90 E-value=0.53 Score=52.46 Aligned_cols=112 Identities=13% Similarity=0.026 Sum_probs=79.0
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCC---CHHHHHHHHHHHHHHh
Q 015709 126 TPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHP---DTDIRKISAWILGKAS 202 (402)
Q Consensus 126 ~~~d~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~---~~~Ir~~Aa~vLg~~a 202 (402)
||-+++.+.+|++..-++..+.+.|..|.+-|+.+=++. ++|.....+|.++ ++.+|..|+.+|-+..
T Consensus 1 ~~m~~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp---------~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I 71 (980)
T 3ibv_A 1 GPMSAQDVENAVEAALDPSVGPIIKQQATDFIGSLRSSS---------TGWKICHEIFSEKTKYKPSTRLICLQTLSEKV 71 (980)
T ss_dssp --CHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHST---------THHHHHHHHTTCTTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcCh---------hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence 456677788888877788888899999988887765554 3888889988653 7899999999999888
Q ss_pred cCChHh----HHHHHHcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcC
Q 015709 203 QNNPLV----QKQVLELGALSKLMKMVK-SSFVEEAVKALYTVSSLIRN 246 (402)
Q Consensus 203 qNNp~~----Q~~~le~g~L~~Ll~LL~-s~~~~vr~kAl~ALS~LiR~ 246 (402)
+.-|.. +...++...+..+.+.-. .++..++.|...+++.++..
T Consensus 72 ~~l~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~ 120 (980)
T 3ibv_A 72 REWNNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQ 120 (980)
T ss_dssp HHCCTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHH
T ss_pred HhCChhhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHH
Confidence 744444 555555555665555111 23456788888888877654
No 87
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=95.87 E-value=0.18 Score=46.58 Aligned_cols=125 Identities=19% Similarity=0.154 Sum_probs=85.5
Q ss_pred CCCCchhHHHhcCCHHHHHHhcCC----C-------CHHHHHHHHHHHHHHhcCChHhHHHHHH-cCcHHHHHHhhcCCC
Q 015709 162 EPIDNANDLSKLGGLSVLVGQLNH----P-------DTDIRKISAWILGKASQNNPLVQKQVLE-LGALSKLMKMVKSSF 229 (402)
Q Consensus 162 e~iDnA~~l~~lGgl~~Li~lL~s----~-------~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le-~g~L~~Ll~LL~s~~ 229 (402)
++++....| ..||+..|+.+|.. + +..++.....||..+. ||..--+.++. .+++..|...+.+..
T Consensus 32 ~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalm-n~~~G~~~vl~~~~~i~~l~~~L~s~~ 109 (233)
T 2f31_A 32 NPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDPAV 109 (233)
T ss_dssp SCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHT-SSHHHHHHHHTSSSHHHHHHTTCCTTS
T ss_pred CCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHh-CChHHHHHHHcCcHHHHHHHHHhCCCC
Confidence 456778888 57999999887742 1 4577888999999887 55555555665 468899999998888
Q ss_pred HHHHHHHHHHHHHHhcCCh-hc-HHHHH----------hcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015709 230 VEEAVKALYTVSSLIRNNL-AG-QEMFY----------VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (402)
Q Consensus 230 ~~vr~kAl~ALS~LiR~~~-~~-~~~f~----------~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~ 289 (402)
+.++..|+--|+.++-... .+ ...+. +..-+..+++.+++. .+..++..++.+|..++.
T Consensus 110 ~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~-~~~e~~~~~m~lIN~li~ 180 (233)
T 2f31_A 110 PNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG-TSIALKVGCLQLINALIT 180 (233)
T ss_dssp HHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTT-SCHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcC-ChHHHHHHHHHHHHHHHC
Confidence 8888888776666654332 23 33222 122456677777653 356677778888877774
No 88
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=95.76 E-value=0.2 Score=47.43 Aligned_cols=207 Identities=16% Similarity=0.131 Sum_probs=131.5
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCC-CchhHHH-hcCCHHHHHHh-------cCCCC----HHHH-HHHHH
Q 015709 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPI-DNANDLS-KLGGLSVLVGQ-------LNHPD----TDIR-KISAW 196 (402)
Q Consensus 131 ~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~i-DnA~~l~-~lGgl~~Li~l-------L~s~~----~~Ir-~~Aa~ 196 (402)
+.|.+.+..|.++ +.|+.|+.+|..--++. |.|--+- .-|-+..|++- |..+. ..-| ..|..
T Consensus 3 ~~i~qli~~L~~p----~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLa 78 (268)
T 2fv2_A 3 EKIYQWINELSSP----ETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALA 78 (268)
T ss_dssp HHHHHHHHHTSST----TTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCc----hhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHH
Confidence 3455556666665 46999999998877765 4454443 35556666542 22221 1123 45555
Q ss_pred HHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCC-----HHHHHHHHHHHHHHhcCC-hhcHHHHHhcCcHHHHHHhhcCC
Q 015709 197 ILGKASQNNPLVQKQVLELGALSKLMKMVKSSF-----VEEAVKALYTVSSLIRNN-LAGQEMFYVEAGDLMLQDILGNS 270 (402)
Q Consensus 197 vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~-----~~vr~kAl~ALS~LiR~~-~~~~~~f~~~gGi~~L~~lL~s~ 270 (402)
++-.+|+ ||+.+..|++.+..-.|.-+|+..+ +-+|..++.-|+++++.. ++...-+.+.+-++...+.+..+
T Consensus 79 LlQcvAs-hpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~G 157 (268)
T 2fv2_A 79 LLQCVAS-HPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESG 157 (268)
T ss_dssp HHHHHHH-CTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHS
T ss_pred HHHHHHc-CcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhc
Confidence 5556664 8999999999987656666666543 235899999999999874 45555556788999999999976
Q ss_pred CccHHHHHHHHHHHHHHhhcc--cccCCCCcchhHHh-CCcHHHHHH-hhcCCChHHHHHHHHHHHHHhcCChhhHHHHH
Q 015709 271 SFEIRLHRKAVSLVGDLAKCQ--LENMHKVEPPLFRD-RFFLKSVVD-LTASADLDLQEKALAAIKNLLQLRTTEALVLK 346 (402)
Q Consensus 271 ~~d~klq~kA~~lL~~L~~~~--l~~~~~~~~~~l~~-~g~v~~Lv~-lL~~~d~dv~E~aL~aL~~L~~~~~~~~~~~~ 346 (402)
+.-.|.-|.|.+.-+.... +... -...+.|.. ..++..+|. +...+++.+..++.++-..|..++. .|..++
T Consensus 158 --selSKtvAtfIlqKIL~dd~GL~Yi-C~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~r-ar~aL~ 233 (268)
T 2fv2_A 158 --SELSKTVATFILQKILLDDTGLAYI-CQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPR-AREALR 233 (268)
T ss_dssp --CHHHHHHHHHHHHHHHHSHHHHHHH-TSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHH-HHHHHH
T ss_pred --cHHHHHHHHHHHHHHhccchhHHHH-HccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHH-HHHHHH
Confidence 4557889999999887531 0000 011111111 123333443 3456689999999999999987642 444443
No 89
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=95.22 E-value=0.87 Score=45.36 Aligned_cols=159 Identities=16% Similarity=0.104 Sum_probs=107.5
Q ss_pred CCCCchhHHHhcCCHHHHHHhcCC-----------CCHHHHHHHHHHHHHHhcCChHhHHHHHHc-CcHHHHHHhhcCCC
Q 015709 162 EPIDNANDLSKLGGLSVLVGQLNH-----------PDTDIRKISAWILGKASQNNPLVQKQVLEL-GALSKLMKMVKSSF 229 (402)
Q Consensus 162 e~iDnA~~l~~lGgl~~Li~lL~s-----------~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~-g~L~~Ll~LL~s~~ 229 (402)
.+++....|. .||+..|+.+|.. .+..++.....||..+. ||..--+.++.+ +++..|...+.+..
T Consensus 36 ~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalm-N~~~Gl~~vl~~~~~i~~l~~sL~s~~ 113 (386)
T 2bnx_A 36 NPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDPAV 113 (386)
T ss_dssp SCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT-SSHHHHHHHHHSSSHHHHHHHTCCTTS
T ss_pred CCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHh-CCHHHHHHHHcCcHHHHHHHHHhCCCC
Confidence 4567788885 6899999887741 14578889999999888 555555555554 78999999998888
Q ss_pred HHHHHHHHHHHHHHhcCCh-hc-HHHHH----------hcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCC
Q 015709 230 VEEAVKALYTVSSLIRNNL-AG-QEMFY----------VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHK 297 (402)
Q Consensus 230 ~~vr~kAl~ALS~LiR~~~-~~-~~~f~----------~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~ 297 (402)
+.++..++--|+.++-... .+ ...++ +..-+..|++.+.+. .+..++..++.+|..|+... .+.
T Consensus 114 ~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~-~~~e~~~a~m~lIN~lv~~~---~dl 189 (386)
T 2bnx_A 114 PNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG-TSIALKVGCLQLINALITPA---EEL 189 (386)
T ss_dssp HHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTT-SCHHHHHHHHHHHHHHHTTC---SCH
T ss_pred chHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcC-ChHHHHHHHHHHHHHHHCCC---CCH
Confidence 8888777766666554332 23 22221 233567788888754 46778999999999998531 111
Q ss_pred ----CcchhHHhCCcHHHHHHhhcCCChHHHHH
Q 015709 298 ----VEPPLFRDRFFLKSVVDLTASADLDLQEK 326 (402)
Q Consensus 298 ----~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~ 326 (402)
..+..|...|+.+.+-.+=...++++..+
T Consensus 190 ~~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Q 222 (386)
T 2bnx_A 190 DFRVHIRSELMRLGLHQVLQELREIENEDMKVQ 222 (386)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHCChHHHHHHHhccCChhHHHH
Confidence 24556778898888776655556655544
No 90
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.09 E-value=0.16 Score=56.33 Aligned_cols=133 Identities=14% Similarity=0.130 Sum_probs=82.6
Q ss_pred HHHHHHhc-CCCCHHHHHHHHHHHHHHhc--CChHhHHHHHHcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCChhcH
Q 015709 176 LSVLVGQL-NHPDTDIRKISAWILGKASQ--NNPLVQKQVLELGALSKLMKMVKSS-FVEEAVKALYTVSSLIRNNLAGQ 251 (402)
Q Consensus 176 l~~Li~lL-~s~~~~Ir~~Aa~vLg~~aq--NNp~~Q~~~le~g~L~~Ll~LL~s~-~~~vr~kAl~ALS~LiR~~~~~~ 251 (402)
++.++..| .+.++-+|..|+.++|-+.- .|+ .+++.|++.+.++ +..+|..|+.+|+-+.-+.+.
T Consensus 543 ~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~---------~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e-- 611 (963)
T 4ady_A 543 ADDLITKMLASDESLLRYGGAFTIALAYAGTGNN---------SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYT-- 611 (963)
T ss_dssp GHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH---------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCS--
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH---------HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHH--
Confidence 44444444 23455555555555443222 222 1356666665544 467888888898877655542
Q ss_pred HHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHH
Q 015709 252 EMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAI 331 (402)
Q Consensus 252 ~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL 331 (402)
.++.++..|... .++-+|..|++++.-++.. ++. ..++..|..++...|.+|+..|+.+|
T Consensus 612 -------~v~rlv~~L~~~-~d~~VR~gAalALGli~aG-----n~~-------~~aid~L~~L~~D~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 612 -------TVPRIVQLLSKS-HNAHVRCGTAFALGIACAG-----KGL-------QSAIDVLDPLTKDPVDFVRQAAMIAL 671 (963)
T ss_dssp -------SHHHHTTTGGGC-SCHHHHHHHHHHHHHHTSS-----SCC-------HHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHhc-CCHHHHHHHHHHHHHhccC-----CCc-------HHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 233444544432 3678999999999988742 221 23556677777788999999999999
Q ss_pred HHHhcCCh
Q 015709 332 KNLLQLRT 339 (402)
Q Consensus 332 ~~L~~~~~ 339 (402)
..+.....
T Consensus 672 G~Ig~gtn 679 (963)
T 4ady_A 672 SMILIQQT 679 (963)
T ss_dssp HHHSTTCC
T ss_pred HHHhcCCc
Confidence 98887643
No 91
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=94.95 E-value=0.52 Score=51.41 Aligned_cols=138 Identities=13% Similarity=0.069 Sum_probs=92.5
Q ss_pred CCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhh---cCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcH
Q 015709 184 NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV---KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 260 (402)
Q Consensus 184 ~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL---~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi 260 (402)
.+++...+..|++++|.++..-+... ...++.++..+ .++++.+|..++|+|+...+...... .+. ..-+
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l-~~vl 531 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VMI-NSVL 531 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HHH-TTTH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HHH-HHHH
Confidence 55677889999999999997643211 23345555443 33467799999999998775422222 232 3677
Q ss_pred HHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCC--ChHHHHHHHHHHHHHhcCC
Q 015709 261 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEKALAAIKNLLQLR 338 (402)
Q Consensus 261 ~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~--d~dv~E~aL~aL~~L~~~~ 338 (402)
+.|...|.+ ++++..|+.++.+++.. ......+.+ ..++..+..++..+ +.+.++.++.++..++...
T Consensus 532 ~~l~~~l~~----~~V~~~A~~al~~l~~~----~~~~l~p~~--~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~ 601 (963)
T 2x19_B 532 PLVLHALGN----PELSVSSVSTLKKICRE----CKYDLPPYA--ANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSAL 601 (963)
T ss_dssp HHHHHHTTC----GGGHHHHHHHHHHHHHH----TGGGCTTTH--HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhCC----chHHHHHHHHHHHHHHH----HHHHHHhhH--HHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcC
Confidence 888888864 45899999999999953 122222322 23555566666653 5789999999999998754
No 92
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=94.94 E-value=1.6 Score=40.13 Aligned_cols=143 Identities=17% Similarity=0.173 Sum_probs=97.8
Q ss_pred HcCcHHHHHHhhcCC-----------CHHHHHHHHHHHHHHhcCChhcHHHHHhc-CcHHHHHHhhcCCCccHHHHHHHH
Q 015709 214 ELGALSKLMKMVKSS-----------FVEEAVKALYTVSSLIRNNLAGQEMFYVE-AGDLMLQDILGNSSFEIRLHRKAV 281 (402)
Q Consensus 214 e~g~L~~Ll~LL~s~-----------~~~vr~kAl~ALS~LiR~~~~~~~~f~~~-gGi~~L~~lL~s~~~d~klq~kA~ 281 (402)
..+|+..|+.+|..- +......++.+|-++. +++.+.+.+..+ +++..|..+|.++ .++++.-++
T Consensus 41 ~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalm-n~~~G~~~vl~~~~~i~~l~~~L~s~--~~~~r~~~l 117 (233)
T 2f31_A 41 GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDPA--VPNMMIDAA 117 (233)
T ss_dssp HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHT-SSHHHHHHHHTSSSHHHHHHTTCCTT--SHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHh-CChHHHHHHHcCcHHHHHHHHHhCCC--CchHHHHHH
Confidence 468888888887631 1233557778887775 677888888764 6889999999876 678999999
Q ss_pred HHHHHHhhcccccC-CCCcchhH------HhCCcHHHHHHhhcC-CChHHHHHHHHHHHHHhcCChh------hHHHHHh
Q 015709 282 SLVGDLAKCQLENM-HKVEPPLF------RDRFFLKSVVDLTAS-ADLDLQEKALAAIKNLLQLRTT------EALVLKD 347 (402)
Q Consensus 282 ~lL~~L~~~~l~~~-~~~~~~~l------~~~g~v~~Lv~lL~~-~d~dv~E~aL~aL~~L~~~~~~------~~~~~~~ 347 (402)
.+++.+|......+ .....+.+ .+..-...+++.|.+ .+.+++-.++..+-.++..+++ .|..|.
T Consensus 118 eLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~- 196 (233)
T 2f31_A 118 KLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELM- 196 (233)
T ss_dssp HHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH-
T ss_pred HHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH-
Confidence 99999886420001 11111111 223344557787874 5789999999988888888653 233455
Q ss_pred cCCcHHHHHHHHH
Q 015709 348 FCGLDTALERLRQ 360 (402)
Q Consensus 348 ~~GL~~~L~~L~~ 360 (402)
.+|+.+.+++|+.
T Consensus 197 ~~Gl~~il~~l~~ 209 (233)
T 2f31_A 197 RLGLHQVLQELRE 209 (233)
T ss_dssp HTTHHHHHHHHHH
T ss_pred HCChHHHHHHHhc
Confidence 7999999999975
No 93
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=94.82 E-value=2.1 Score=42.52 Aligned_cols=241 Identities=14% Similarity=0.133 Sum_probs=131.5
Q ss_pred hccCCCCHHHHHHhHHHHHHHHHHcCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHH
Q 015709 100 QDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVL 179 (402)
Q Consensus 100 ~~~~~~s~e~l~~r~~~L~ea~~~l~~~~d~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~L 179 (402)
++..+||++++. +-.++.|+.++.+.+.. +-+.+. +.+.|-.-+..-..- .... ...-....--.-.
T Consensus 5 ~~~~~~se~ev~---~~F~~mL~~mnl~~ek~------~~l~~~--~~e~Kw~mi~~~~~~-~~~~-~~~~~~~~sP~~y 71 (383)
T 3eg5_B 5 QSLQDISDEQVL---VLFEQMLVDMNLNEEKQ------QPLREK--DIVIKREMVSQYLHT-SKAG-MNQKESSRSAMMY 71 (383)
T ss_dssp ----------CC---HHHHHHHHHTTCCHHHH------HHHHSS--CHHHHHHHHHHHHHH-C----------CCCHHHH
T ss_pred hhcccCCHHHHH---HHHHHHHHHcCCCHHHH------HHHHhC--CHHHHHHHHHHHHHH-hhhc-cccccCCCCHHHH
Confidence 456778887763 23466788888765443 333333 345453332211100 0000 0001112222334
Q ss_pred HHhcCCCC-HHHHHHHHHHHHHHhcCChHhH-HHHHHcCcHHHHHHhhcC-----------CCHHHHHHHHHHHHHHhcC
Q 015709 180 VGQLNHPD-TDIRKISAWILGKASQNNPLVQ-KQVLELGALSKLMKMVKS-----------SFVEEAVKALYTVSSLIRN 246 (402)
Q Consensus 180 i~lL~s~~-~~Ir~~Aa~vLg~~aqNNp~~Q-~~~le~g~L~~Ll~LL~s-----------~~~~vr~kAl~ALS~LiR~ 246 (402)
+..|.+.. .+-......-|...-.++|..- +.|. .+|+..|+.+|.. .+......++.+|.++. +
T Consensus 72 i~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalm-N 149 (383)
T 3eg5_B 72 IQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-N 149 (383)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHT-S
T ss_pred HHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHh-c
Confidence 55554432 2111112333333334444322 3344 6789999998852 11244567778887775 6
Q ss_pred ChhcHHHHHhc-CcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCC----cchhH------HhCCcHHHHHHh
Q 015709 247 NLAGQEMFYVE-AGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKV----EPPLF------RDRFFLKSVVDL 315 (402)
Q Consensus 247 ~~~~~~~f~~~-gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~----~~~~l------~~~g~v~~Lv~l 315 (402)
+..+...++.+ .++..|..+|.++ .++++.-|+-+++.+|... .+.. ..+.+ .+..-...+++.
T Consensus 150 ~~~G~~~vl~~~~~i~~l~~~L~s~--~~~~~~~aleLL~~lc~~~---~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~ 224 (383)
T 3eg5_B 150 NKFGIKTMLETEEGILLLVRAMDPA--VPNMMIDAAKLLSALCILP---QPEDMNERVLEAMTERAEMDEVERFQPLLDG 224 (383)
T ss_dssp SHHHHHHHHTCSSHHHHHHHTCCTT--SHHHHHHHHHHHHHHHTCC---SSTTHHHHHHHHHHHHHHHHTSCTTHHHHHT
T ss_pred chhhHHHHHcChHHHHHHHHHhCCC--chHHHHHHHHHHHHHHhCc---CcCCcHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 77888888875 6889999999876 6789999999999998631 1011 11111 233445678888
Q ss_pred hcC-CChHHHHHHHHHHHHHhcCChh------hHHHHHhcCCcHHHHHHHHHH
Q 015709 316 TAS-ADLDLQEKALAAIKNLLQLRTT------EALVLKDFCGLDTALERLRQQ 361 (402)
Q Consensus 316 L~~-~d~dv~E~aL~aL~~L~~~~~~------~~~~~~~~~GL~~~L~~L~~~ 361 (402)
|.+ .+.+++-.++..+-.++..+++ .|..|. .+|+.+.+++|+..
T Consensus 225 L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~-~~Gl~~il~~lr~~ 276 (383)
T 3eg5_B 225 LKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELM-RLGLHQVLQELREI 276 (383)
T ss_dssp TSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH-HTTHHHHHHHHTTS
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HCChHHHHHHHhcC
Confidence 887 5889999999988888887643 223455 79999999988753
No 94
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=94.73 E-value=1 Score=44.85 Aligned_cols=139 Identities=17% Similarity=0.181 Sum_probs=96.9
Q ss_pred cCcHHHHHHhhcC----C-------CHHHHHHHHHHHHHHhcCChhcHHHHHhc-CcHHHHHHhhcCCCccHHHHHHHHH
Q 015709 215 LGALSKLMKMVKS----S-------FVEEAVKALYTVSSLIRNNLAGQEMFYVE-AGDLMLQDILGNSSFEIRLHRKAVS 282 (402)
Q Consensus 215 ~g~L~~Ll~LL~s----~-------~~~vr~kAl~ALS~LiR~~~~~~~~f~~~-gGi~~L~~lL~s~~~d~klq~kA~~ 282 (402)
.+|+..|+.+|.. . +......++.+|-++. +++.+.+.+..+ +++..|..+|.++ .++++..++.
T Consensus 46 ~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalm-N~~~Gl~~vl~~~~~i~~l~~sL~s~--~~~~r~~vle 122 (386)
T 2bnx_A 46 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDPA--VPNMMIDAAK 122 (386)
T ss_dssp HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT-SSHHHHHHHHHSSSHHHHHHHTCCTT--SHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHh-CCHHHHHHHHcCcHHHHHHHHHhCCC--CchHHHHHHH
Confidence 5778888877752 1 1234567788888775 567788877765 6899999999875 6788999999
Q ss_pred HHHHHhhcccccCCCC----cchh------HHhCCcHHHHHHhhc-CCChHHHHHHHHHHHHHhcCChh------hHHHH
Q 015709 283 LVGDLAKCQLENMHKV----EPPL------FRDRFFLKSVVDLTA-SADLDLQEKALAAIKNLLQLRTT------EALVL 345 (402)
Q Consensus 283 lL~~L~~~~l~~~~~~----~~~~------l~~~g~v~~Lv~lL~-~~d~dv~E~aL~aL~~L~~~~~~------~~~~~ 345 (402)
++..+|... .+.. .... ..+..-...+++.|. +.+.+++..++..+-.++..+++ .|..|
T Consensus 123 LL~alc~~~---~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef 199 (386)
T 2bnx_A 123 LLSALCILP---QPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSEL 199 (386)
T ss_dssp HHHHHHTCC---SSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHcCC---CCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 999998631 1111 1111 123334456778787 45889999999989888888653 23455
Q ss_pred HhcCCcHHHHHHHHH
Q 015709 346 KDFCGLDTALERLRQ 360 (402)
Q Consensus 346 ~~~~GL~~~L~~L~~ 360 (402)
. .+|+.+.+++|+.
T Consensus 200 ~-~~GL~~il~~Lr~ 213 (386)
T 2bnx_A 200 M-RLGLHQVLQELRE 213 (386)
T ss_dssp H-HTTHHHHHHHHTT
T ss_pred H-HCChHHHHHHHhc
Confidence 5 7999999998876
No 95
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=94.61 E-value=0.19 Score=56.45 Aligned_cols=139 Identities=12% Similarity=0.073 Sum_probs=87.9
Q ss_pred CCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCC---H--HHHHHHHHHHHHHhcC---ChhcHHHHHhc
Q 015709 186 PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF---V--EEAVKALYTVSSLIRN---NLAGQEMFYVE 257 (402)
Q Consensus 186 ~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~---~--~vr~kAl~ALS~LiR~---~~~~~~~f~~~ 257 (402)
.+-..+..|+|++|.++..-..-+..-.=..+++.|+.+..... + -++..++|.||...+- ++. |. .
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~----~L-~ 539 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWN----FL-R 539 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHH----HH-H
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHH----HH-H
Confidence 56788999999999999764433332222357888888886411 2 2455677999975542 332 21 2
Q ss_pred CcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHh------C----CcHHHHHHhhcCCChHHHHHH
Q 015709 258 AGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD------R----FFLKSVVDLTASADLDLQEKA 327 (402)
Q Consensus 258 gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~------~----g~v~~Lv~lL~~~d~dv~E~a 327 (402)
.-+..|...+.++ +++++..|++++.+||.. .+..+.. . .++..+...+..-+..-+..+
T Consensus 540 ~vl~~L~~~l~~~--~~~v~~~A~~al~~l~~~--------c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~l 609 (1023)
T 4hat_C 540 TVILKLFEFMHET--HEGVQDMACDTFIKIVQK--------CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTF 609 (1023)
T ss_dssp HHHHHHHHHTTCS--CHHHHHHHHHHHHHHHHH--------HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHH--------HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3445566666543 578999999999999963 1112211 1 233334444444577788899
Q ss_pred HHHHHHHhcCCh
Q 015709 328 LAAIKNLLQLRT 339 (402)
Q Consensus 328 L~aL~~L~~~~~ 339 (402)
..++..+++..+
T Consensus 610 yeai~~vi~~~~ 621 (1023)
T 4hat_C 610 YKACGIIISEER 621 (1023)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHHhCC
Confidence 999999988754
No 96
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=94.60 E-value=0.62 Score=51.98 Aligned_cols=188 Identities=14% Similarity=0.153 Sum_probs=122.6
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhc-CCHHHHHHhcCCCCHHHHHHHHHHHHHHhc--CChH
Q 015709 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKL-GGLSVLVGQLNHPDTDIRKISAWILGKASQ--NNPL 207 (402)
Q Consensus 131 ~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~l-Ggl~~Li~lL~s~~~~Ir~~Aa~vLg~~aq--NNp~ 207 (402)
.++..+++.+.+.. .=..|+.||..+..+++.. ...--..+ ..+|.+-.+.-...++|+..|..++..+|+ .|..
T Consensus 133 ~~~~~~~~~~~~~~-kw~~k~~~l~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d 210 (986)
T 2iw3_A 133 ALLPHLTNAIVETN-KWQEKIAILAAFSAMVDAA-KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKD 210 (986)
T ss_dssp HHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTT
T ss_pred HHHHHHHHHhcccc-chHHHHHHHHHHHHHHHHh-HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcc
Confidence 34455555564433 3568999999999999754 11111122 246666677788999999999999999987 3554
Q ss_pred hHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q 015709 208 VQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDL 287 (402)
Q Consensus 208 ~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L 287 (402)
+. ..+|.|++.+.+++. .-+++..||+.+-- .....=--+=-+|+|.+.|... ...++++++-.+-||
T Consensus 211 ~~------~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv--~~v~~~~l~~~~p~l~r~l~~~--~~~~~r~~~~~~~n~ 278 (986)
T 2iw3_A 211 IE------RFIPSLIQCIADPTE--VPETVHLLGATTFV--AEVTPATLSIMVPLLSRGLNER--ETGIKRKSAVIIDNM 278 (986)
T ss_dssp TG------GGHHHHHHHHHCTTH--HHHHHHHHTTCCCC--SCCCHHHHHHHHHHHHHHHTSS--SHHHHHHHHHHHHHH
T ss_pred hh------hhHHHHHHHhcChhh--hHHHHHHhhcCeeE--eeecchhHHHHHHHHHhhhccC--cchhheeeEEEEcch
Confidence 43 468999999987642 55678888874321 1111100112357777778765 345789999999999
Q ss_pred hhcccccCCCCcchhHHhCCcHHHHHHhhcC-CChHHHHHHHHHHHHHhc
Q 015709 288 AKCQLENMHKVEPPLFRDRFFLKSVVDLTAS-ADLDLQEKALAAIKNLLQ 336 (402)
Q Consensus 288 ~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~-~d~dv~E~aL~aL~~L~~ 336 (402)
|.- -.+|....-|. ..++|.|-..... .||++||.+-+|+..|..
T Consensus 279 ~~l---v~~~~~~~~f~-~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~ 324 (986)
T 2iw3_A 279 CKL---VEDPQVIAPFL-GKLLPGLKSNFATIADPEAREVTLRALKTLRR 324 (986)
T ss_dssp HTT---CCCHHHHHHHH-TTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHH
T ss_pred hhh---cCCHHHHhhhh-hhhhhHHHHHhhccCCHHHHHHHHHHHHHHHH
Confidence 963 12333333332 4566666665544 499999999999998854
No 97
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=94.31 E-value=0.4 Score=52.77 Aligned_cols=181 Identities=9% Similarity=0.028 Sum_probs=104.3
Q ss_pred CHHHHHHHHHHHHHccCCCCc----hh------HHHhcCCHHHHHHhcCCC---CHHHHHHHHHHHHHHhcCChHhHHHH
Q 015709 146 SLEDSQRALQELLILVEPIDN----AN------DLSKLGGLSVLVGQLNHP---DTDIRKISAWILGKASQNNPLVQKQV 212 (402)
Q Consensus 146 t~e~k~~AL~~L~~Lve~iDn----A~------~l~~lGgl~~Li~lL~s~---~~~Ir~~Aa~vLg~~aqNNp~~Q~~~ 212 (402)
+-..|..|+-.+..+.+.... .. ++... ....++..|.++ ++-+|..|+|+||..+..-+ ...
T Consensus 418 ~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~-l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~---~~~ 493 (960)
T 1wa5_C 418 NWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDF-FTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT---KAQ 493 (960)
T ss_dssp CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHH-HHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC---HHH
T ss_pred hHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHH-HHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC---HHH
Confidence 345777888877776543211 11 11110 011234556666 89999999999999987522 222
Q ss_pred HHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh-------h-cHHHHH--hcCcHHHHHHhhcCCC-ccHH--HHHH
Q 015709 213 LELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNL-------A-GQEMFY--VEAGDLMLQDILGNSS-FEIR--LHRK 279 (402)
Q Consensus 213 le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~-------~-~~~~f~--~~gGi~~L~~lL~s~~-~d~k--lq~k 279 (402)
+ ...++.++..+.+++..|+..|++||.+++.+.. . ....+. -..-++.|..++.... ...+ ....
T Consensus 494 l-~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~ 572 (960)
T 1wa5_C 494 L-IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEF 572 (960)
T ss_dssp H-HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHH
T ss_pred H-HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHH
Confidence 2 2468889988888788899999999999987421 1 111121 1234555666666531 0011 1235
Q ss_pred HHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhh----cC-CChHHHHHHHHHHHHHhcC
Q 015709 280 AVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLT----AS-ADLDLQEKALAAIKNLLQL 337 (402)
Q Consensus 280 A~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL----~~-~d~dv~E~aL~aL~~L~~~ 337 (402)
+..+|..++.. ......+.+. .+++.+...+ ++ ++..+...++.+|..++..
T Consensus 573 l~~al~~vv~~----~~~~~~p~~~--~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~ 629 (960)
T 1wa5_C 573 LMRSIFRVLQT----SEDSIQPLFP--QLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNY 629 (960)
T ss_dssp HHHHHHHHHHH----HTTTTGGGHH--HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH----HHHhhhhHHH--HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence 56666666542 1233344322 2444444443 22 3777888889999888775
No 98
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=93.75 E-value=0.045 Score=56.23 Aligned_cols=82 Identities=15% Similarity=0.131 Sum_probs=69.2
Q ss_pred chhHHHhc--CCHHHHHHhcCC----------CCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHH
Q 015709 166 NANDLSKL--GGLSVLVGQLNH----------PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEA 233 (402)
Q Consensus 166 nA~~l~~l--Ggl~~Li~lL~s----------~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr 233 (402)
||..|.+- ..+..|+.+|++ .++.+.+-||.=||..++..|..+..+-+.|+=..++.|+.+++++||
T Consensus 385 Na~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr 464 (480)
T 1ho8_A 385 NIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVK 464 (480)
T ss_dssp HSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHH
T ss_pred HHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHH
Confidence 44444442 246678888963 478899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCC
Q 015709 234 VKALYTVSSLIRNN 247 (402)
Q Consensus 234 ~kAl~ALS~LiR~~ 247 (402)
..|+.|+.-++.++
T Consensus 465 ~~AL~avQklm~~~ 478 (480)
T 1ho8_A 465 YEALKATQAIIGYT 478 (480)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999887654
No 99
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.64 E-value=1.1 Score=49.70 Aligned_cols=139 Identities=14% Similarity=0.099 Sum_probs=91.2
Q ss_pred CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcc-CCCCchhHHHhcCCHHHHHHhc-CCCCHHHHHHHHHHHHHHhcCC
Q 015709 128 SDAQLIQIAIDDLNNSTLSLEDSQRALQELLILV-EPIDNANDLSKLGGLSVLVGQL-NHPDTDIRKISAWILGKASQNN 205 (402)
Q Consensus 128 ~d~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lv-e~iDnA~~l~~lGgl~~Li~lL-~s~~~~Ir~~Aa~vLg~~aqNN 205 (402)
.+...+++++..+.+.. +.+.|..|...|..+. .+. ..++.++..| .+.++.||..|++++|.++..|
T Consensus 574 Gn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn 643 (963)
T 4ady_A 574 GNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGK 643 (963)
T ss_dssp CCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSS
T ss_pred CCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCC
Confidence 44566777777776543 4466777777777643 322 2466777755 6789999999999999999888
Q ss_pred hHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhc----HHHHHhcCcHHHHHHhhcCCCccHHHHHHHH
Q 015709 206 PLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG----QEMFYVEAGDLMLQDILGNSSFEIRLHRKAV 281 (402)
Q Consensus 206 p~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~----~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~ 281 (402)
|. . .++..|..+.++.+..||..|+.||+-+.-++..+ ...|. ..|.....+++.+...+--+.
T Consensus 644 ~~--~-----~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l-----~~L~~~~~dk~~d~~~~fga~ 711 (963)
T 4ady_A 644 GL--Q-----SAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADIN-----KNFLSVITNKHQEGLAKFGAC 711 (963)
T ss_dssp CC--H-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHH-----HHHHHHHHCSSSCHHHHHHHH
T ss_pred Cc--H-----HHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHH-----HHHHHHHhcccccHHHHHHHH
Confidence 73 1 24567777888888999999999999887665443 33332 224444444333444555555
Q ss_pred HHHHHHh
Q 015709 282 SLVGDLA 288 (402)
Q Consensus 282 ~lL~~L~ 288 (402)
.+..-+.
T Consensus 712 iAqGll~ 718 (963)
T 4ady_A 712 VAQGIMN 718 (963)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 5555443
No 100
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=93.60 E-value=0.6 Score=51.12 Aligned_cols=131 Identities=10% Similarity=0.107 Sum_probs=83.4
Q ss_pred CHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHH---HhcC--CCCHHHHHHHHHHHHHHhcC---ChHhHHHHHHcCc
Q 015709 146 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLV---GQLN--HPDTDIRKISAWILGKASQN---NPLVQKQVLELGA 217 (402)
Q Consensus 146 t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li---~lL~--s~~~~Ir~~Aa~vLg~~aqN---Np~~Q~~~le~g~ 217 (402)
+-..++.|+-.|.-+.+....... ..++.++ ..|. .+++.||..|+|+||..+.- +|+ .+. ..
T Consensus 477 ~w~~~eaal~~l~~iae~~~~~~~----~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~----~l~-~v 547 (971)
T 2x1g_F 477 HWTKLEACIYSFQSVAEHFGGEEK----RQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPA----YIP-PA 547 (971)
T ss_dssp CCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC--------CHH-HH
T ss_pred cHHHHHHHHHHHHHHHhhcChhhh----HHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHH----HHH-HH
Confidence 345788888888887776543221 2233333 3334 34899999999999998742 231 111 35
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015709 218 LSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (402)
Q Consensus 218 L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~ 289 (402)
++.|+..++ +.++..|.+|+..+++........++ ..-+..|..++..+..+.+.+..+..++..++.
T Consensus 548 l~~l~~~l~---~~v~~~A~~al~~l~~~~~~~l~p~~-~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~ 615 (971)
T 2x1g_F 548 INLLVRGLN---SSMSAQATLGLKELCRDCQLQLKPYA-DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMS 615 (971)
T ss_dssp HHHHHHHHH---SSCHHHHHHHHHHHHHHCHHHHHHHH-HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC---hHHHHHHHHHHHHHHHHHHHhccccH-HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHH
Confidence 677777772 56899999999999987654333332 245556667777654456788889999998875
No 101
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=93.24 E-value=4.7 Score=39.50 Aligned_cols=145 Identities=14% Similarity=0.112 Sum_probs=104.9
Q ss_pred HHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcC---cHHHHHHhhcC
Q 015709 193 ISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA---GDLMLQDILGN 269 (402)
Q Consensus 193 ~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~g---Gi~~L~~lL~s 269 (402)
.+=.+|..|+. ++.+...++..+.+-.+.+.+..++=++...|...+-.+...|+.....|+..+ =+...-.+|.|
T Consensus 142 ~~G~mLRecir-~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S 220 (341)
T 1upk_A 142 NCGIMLRECIR-HEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHS 220 (341)
T ss_dssp HHHHHHHHHHT-SHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHH-hHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcC
Confidence 33444444444 445566666667777788888877778888888888888777887777887655 34556678888
Q ss_pred CCccHHHHHHHHHHHHHHhhcccccCCCCc-chhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCChhhHH
Q 015709 270 SSFEIRLHRKAVSLVGDLAKCQLENMHKVE-PPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEAL 343 (402)
Q Consensus 270 ~~~d~klq~kA~~lL~~L~~~~l~~~~~~~-~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~~~ 343 (402)
+ +.=.|+.++-+|+.|.... .+... ...+.+..-++.++.+|+.+...+|-.|-....-.+..+...+.
T Consensus 221 ~--NYVTkRQSlKLLgelLldr---~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~ 290 (341)
T 1upk_A 221 E--NYVTKRQSLKLLGELLLDR---HNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQP 290 (341)
T ss_dssp S--SHHHHHHHHHHHHHHHHSG---GGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHH
T ss_pred C--cchhHHHHHHHHHHHHhCc---hHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChH
Confidence 7 4558999999999998631 12222 23344567889999999999999999999999988888754443
No 102
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=93.14 E-value=1.1 Score=48.86 Aligned_cols=136 Identities=14% Similarity=0.116 Sum_probs=86.9
Q ss_pred CCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHh---cCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHH
Q 015709 145 LSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQ---LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKL 221 (402)
Q Consensus 145 ~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~l---L~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~L 221 (402)
.+...++.++-.+..+.+.++... ..-++.++.. +.++++.||..++|+||..+.--.... .++ ...++.|
T Consensus 461 ~~w~~~eaal~al~~i~~~~~~~~----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l-~~vl~~l 534 (963)
T 2x19_B 461 YSWQHTEALLYGFQSIAETIDVNY----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VMI-NSVLPLV 534 (963)
T ss_dssp CCHHHHHHHHHHHHHHTTSCCSSC----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HHH-TTTHHHH
T ss_pred CchHHHHHHHHHHHHHHhhcCchh----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HHH-HHHHHHH
Confidence 356678888888877776653211 1123334433 344688999999999999875311111 233 3688999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015709 222 MKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (402)
Q Consensus 222 l~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~ 289 (402)
+..+.+ +.++..|++|+..+++..+....-++ ..-+..|..++..+..+.+.+..+..++..++.
T Consensus 535 ~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~-~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~ 599 (963)
T 2x19_B 535 LHALGN--PELSVSSVSTLKKICRECKYDLPPYA-ANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLS 599 (963)
T ss_dssp HHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHhccCCCChHHHHHHHHHHHHHHh
Confidence 988865 67899999999999986543222111 223445556666533356678888888888874
No 103
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=93.03 E-value=4.7 Score=38.76 Aligned_cols=206 Identities=11% Similarity=0.067 Sum_probs=113.1
Q ss_pred CCCCHHHHHHhHHHHHHHHHHcC-----CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHH
Q 015709 103 QRLSPSELKKRQMEIKELMEKLK-----TPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLS 177 (402)
Q Consensus 103 ~~~s~e~l~~r~~~L~ea~~~l~-----~~~d~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~ 177 (402)
.+++|+++. -|.++++.+. .+++ ..+.-+.+++ ..+.+.+..++|-|+-.+-+.+-+.-|..-+.-.
T Consensus 75 ~~Ls~~el~----~L~~l~~~l~~~s~~~~~~-~~l~~l~kil---~WP~~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~ 146 (304)
T 3ebb_A 75 KKLTEDDLI----LLEKILSLICNSSSEKPTV-QQLQILWKAI---NCPEDIVFPALDILRLSIKHPSVNENFCNEKEGA 146 (304)
T ss_dssp GCCCHHHHH----HHHHHHHHHHTTCSSCCCH-HHHHHHHHHH---TSCTTTCHHHHHHHHHHTTSHHHHHHHHSTTTHH
T ss_pred cCcCHHHHH----HHHHHHHHHhccCCCccch-HHHHHHHHHH---cCCHHhHHHHHHHHHHHHcCccHHHHhhccccch
Confidence 368998763 2334443321 1222 2333333443 3556788899999998887666555565443333
Q ss_pred HHH----HhcC-CCCHHHHHHHHHHHHHHhcCChHhHHHHHHc--CcHHHHHHhhcCCCHHHHHHH---HHHHHHHhcCC
Q 015709 178 VLV----GQLN-HPDTDIRKISAWILGKASQNNPLVQKQVLEL--GALSKLMKMVKSSFVEEAVKA---LYTVSSLIRNN 247 (402)
Q Consensus 178 ~Li----~lL~-s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~--g~L~~Ll~LL~s~~~~vr~kA---l~ALS~LiR~~ 247 (402)
.++ ..++ ...+..+..++++++|+..+ +..++.++.. ..++.+...+.+.+..++..+ ++-+|......
T Consensus 147 ~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~-~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~ 225 (304)
T 3ebb_A 147 QFSSHLINLLNPKGKPANQLLALRTFCNCFVG-QAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKD 225 (304)
T ss_dssp HHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGS-HHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHccCC-chhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhc
Confidence 333 4443 24577799999999999975 5566666643 244445555555567776544 44444433222
Q ss_pred hhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcC-CChHHHHH
Q 015709 248 LAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS-ADLDLQEK 326 (402)
Q Consensus 248 ~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~-~d~dv~E~ 326 (402)
.. .+.- .--...+..++... .+.....+++-++.+|+. .+.+..+.....|+-..+-..... ....+.|.
T Consensus 226 ~~-~~~~--~~ll~~l~~il~~~-~d~EalyR~LvALGtL~~-----~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~ 296 (304)
T 3ebb_A 226 HN-IEGK--AQCLSLISTILEVV-QDLEATFRLLVALGTLIS-----DDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSEC 296 (304)
T ss_dssp CC-HHHH--HHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHT-----TCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHH
T ss_pred CC-chHH--HHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHh-----CChhHHHHHHHcCHHHHHHHHHhCCCchhHHHH
Confidence 11 1111 11334455555543 356678889999999984 233334444445555544444443 23444443
No 104
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=92.81 E-value=6.2 Score=37.05 Aligned_cols=179 Identities=7% Similarity=0.054 Sum_probs=114.1
Q ss_pred CHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhh
Q 015709 146 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV 225 (402)
Q Consensus 146 t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL 225 (402)
+.++|+..|....+++-+-|.+ -+- .-++.++.+-.+++.++|...+..|..++...++... ..++.|..++
T Consensus 28 ~~~~kl~~L~qa~el~~~~dp~-ll~--~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~-----~~l~~L~~Ll 99 (257)
T 3gs3_A 28 SPSTKCELLAKVQETVLGSCAE-LAE--EFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLP-----HVINVVSMLL 99 (257)
T ss_dssp CHHHHHHHHHHHHHHHTTTTGG-GHH--HHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHccCHh-HHH--HHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 3479999999999977655432 222 2467778877778999999999999999976665433 3578899999
Q ss_pred cCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCc--------H-------HHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015709 226 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG--------D-------LMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (402)
Q Consensus 226 ~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gG--------i-------~~L~~lL~s~~~d~klq~kA~~lL~~L~~~ 290 (402)
+++++.+.++++-+.+++- |...+.+...++ | ..+...+.+. +..+|..|+-++..+..-
T Consensus 100 ~d~d~~V~K~~I~~~~~iY---~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~--n~gvkl~~iKF~e~vIl~ 174 (257)
T 3gs3_A 100 RDNSAQVIKRVIQACGSIY---KNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNE--NDGIRTNAIKFLEGVVVL 174 (257)
T ss_dssp TCSCHHHHHHHHHHHHHHH---HHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSS--CHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHH---HHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccC--CcchHHHHHHHHHHHHHh
Confidence 9888889888888888864 333344443332 2 2344445554 677899999888887632
Q ss_pred cc-ccCC-----------------CCc-chhHH--hCCcHHHHHHhhcCC--ChHHHHHHHHHHHHHhcC
Q 015709 291 QL-ENMH-----------------KVE-PPLFR--DRFFLKSVVDLTASA--DLDLQEKALAAIKNLLQL 337 (402)
Q Consensus 291 ~l-~~~~-----------------~~~-~~~l~--~~g~v~~Lv~lL~~~--d~dv~E~aL~aL~~L~~~ 337 (402)
+- ...+ +-. ...+. -.+++..|+..+.++ +.-....++..|..++..
T Consensus 175 qT~~~~~~~~~~~d~SL~~Vp~~Hp~l~~~~Le~Ea~~lL~~LL~~~~~~~iss~~l~a~lnsL~~Iak~ 244 (257)
T 3gs3_A 175 QSFADEDSLKRDGDFSLADVPDHCTLFRREKLQEEGNNILDILLQFHGTTHISSVNLIACTSSLCTIAKM 244 (257)
T ss_dssp TSCCCTTSCCCTTCCCGGGSCSSCCSSCHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHH
T ss_pred hcCCCcccCCCCCCCCHHHCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHh
Confidence 20 0000 000 11222 145666666666654 233455666666666653
No 105
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=92.66 E-value=2.3 Score=46.62 Aligned_cols=194 Identities=9% Similarity=0.102 Sum_probs=117.8
Q ss_pred HHHHHHhhcCC-CCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC-------
Q 015709 134 QIAIDDLNNST-LSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNN------- 205 (402)
Q Consensus 134 k~al~~L~~~~-~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNN------- 205 (402)
...+..+.++. ..+-.|..|+..+..+.+.+. ...+ ...++.+++.|.++++.||..||++|.+++.+.
T Consensus 458 ~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~-~~~l--~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~ 534 (960)
T 1wa5_C 458 KEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT-KAQL--IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPA 534 (960)
T ss_dssp HHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC-HHHH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCC
T ss_pred HHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC-HHHH--HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhccccccccc
Confidence 34555666542 256678889999999888763 2222 235778888888889999999999999988741
Q ss_pred hH-hHHHHHH--cCcHHHHHHhhcCCC---HH--HHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhh----cCCCcc
Q 015709 206 PL-VQKQVLE--LGALSKLMKMVKSSF---VE--EAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDIL----GNSSFE 273 (402)
Q Consensus 206 p~-~Q~~~le--~g~L~~Ll~LL~s~~---~~--vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL----~s~~~d 273 (402)
+. .+..+.. ...++.|+.++.... .. ....++.||+.++...+.....+.. .-++.|...+ +++ .+
T Consensus 535 ~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~-~l~~~L~~~l~~~~~~~-~~ 612 (960)
T 1wa5_C 535 FIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFP-QLLAQFIEIVTIMAKNP-SN 612 (960)
T ss_dssp BSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHH-HHHHHHHHHHHHHTTSC-CC
T ss_pred ccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHhCC-CC
Confidence 11 1222211 135667777777641 11 2345666776665543222222211 1223333333 333 36
Q ss_pred HHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcC
Q 015709 274 IRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 337 (402)
Q Consensus 274 ~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~ 337 (402)
..++..+..+|+.++.. .+++....+ ...+++.+...|..+..++.+.+...+..++..
T Consensus 613 ~~~~~~~~e~l~~l~~~----~~~~~~~~~-~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~ 671 (960)
T 1wa5_C 613 PRFTHYTFESIGAILNY----TQRQNLPLL-VDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQ 671 (960)
T ss_dssp HHHHHHHHHHHHHHHHT----SCGGGHHHH-HHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhc----CCcchHHHH-HHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHh
Confidence 66777888888888752 233333333 345677888888877777888888888777643
No 106
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=92.65 E-value=1.1 Score=45.95 Aligned_cols=80 Identities=13% Similarity=0.177 Sum_probs=66.3
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhc
Q 015709 178 VLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVE 257 (402)
Q Consensus 178 ~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~ 257 (402)
.++..-+ +++..+..|+..|....++-|..|+. +|..+++|..+++..+|+.|+..|..+|++ .....
T Consensus 33 ~Il~~~k-g~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i~k---- 100 (507)
T 3u0r_A 33 VILDGVK-GGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG--ENLPR---- 100 (507)
T ss_dssp HHHHGGG-SCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCHHH----
T ss_pred HHHHhcC-CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhhhh----
Confidence 3444333 46999999999999999999999987 467899999999999999999999999997 33333
Q ss_pred CcHHHHHHhhcCC
Q 015709 258 AGDLMLQDILGNS 270 (402)
Q Consensus 258 gGi~~L~~lL~s~ 270 (402)
...+|+++|+++
T Consensus 101 -iaDvL~QlLqtd 112 (507)
T 3u0r_A 101 -VADILTQLLQTD 112 (507)
T ss_dssp -HHHHHHHHTTCC
T ss_pred -HHHHHHHHHhcc
Confidence 457899999976
No 107
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=92.44 E-value=0.94 Score=49.58 Aligned_cols=134 Identities=13% Similarity=0.069 Sum_probs=83.4
Q ss_pred CCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhh---c--CCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcH
Q 015709 186 PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV---K--SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 260 (402)
Q Consensus 186 ~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL---~--s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi 260 (402)
++-..+..|..++|.++..-+.... ..++.++.++ . +.++.+|..++|+|+.+........+ +. ...+
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~~-----~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~-~l-~~vl 548 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEEK-----RQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPA-YI-PPAI 548 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CH-HHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhhh-----HHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHH-HH-HHHH
Confidence 4667899999999999976443221 3344444433 3 23678899999999987653221111 11 1245
Q ss_pred HHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCC--ChHHHHHHHHHHHHHhcC
Q 015709 261 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEKALAAIKNLLQL 337 (402)
Q Consensus 261 ~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~--d~dv~E~aL~aL~~L~~~ 337 (402)
+.|...|. ++++..|++++.+|+.. ......+.+ ..++..+.+++..+ +.+.++.++.++..++..
T Consensus 549 ~~l~~~l~-----~~v~~~A~~al~~l~~~----~~~~l~p~~--~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~ 616 (971)
T 2x1g_F 549 NLLVRGLN-----SSMSAQATLGLKELCRD----CQLQLKPYA--DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL 616 (971)
T ss_dssp HHHHHHHH-----SSCHHHHHHHHHHHHHH----CHHHHHHHH--HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhC-----hHHHHHHHHHHHHHHHH----HHHhccccH--HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence 56666662 24799999999999953 111122222 34566667777774 678999999999999875
No 108
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=91.85 E-value=5.3 Score=44.79 Aligned_cols=141 Identities=15% Similarity=0.109 Sum_probs=70.2
Q ss_pred ccCCCCHHHHH----------HhHHHHHHHHHHcCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHH
Q 015709 101 DVQRLSPSELK----------KRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDL 170 (402)
Q Consensus 101 ~~~~~s~e~l~----------~r~~~L~ea~~~l~~~~d~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l 170 (402)
-.+.++.|++. +-+.|+.+++-..|.+.-...|++. +.+...+..+-..++-.+...+... .
T Consensus 319 ~lR~~~~e~L~~l~~~~~~~~~~r~~~lDal~~aGT~~a~~~i~~~---i~~~~l~~~ea~~~l~~~~~~~~Pt---~-- 390 (1056)
T 1lsh_A 319 FLRNVDAGVLQSIWHKLHQQKDYRRWILDAVPAMATSEALLFLKRT---LASEQLTSAEATQIVASTLSNQQAT---R-- 390 (1056)
T ss_dssp HHTTSCHHHHHHHHHHHTTSHHHHHHHHHHHHHHCSHHHHHHHHHH---HHTTCSCHHHHHHHHHHHHHTCCCC---H--
T ss_pred HHhcCCHHHHHHHHHHHhccHHHHHHHHHHhHhcCCHHHHHHHHHH---HHcCCCCHHHHHHHHHHhhccCCCC---H--
Confidence 34567776653 1234666666555554334444444 5566667655444444433333221 1
Q ss_pred HhcCCHHHHHHhcCC----CCHHHHHHHHHHHHHHhc----CChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHH
Q 015709 171 SKLGGLSVLVGQLNH----PDTDIRKISAWILGKASQ----NNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSS 242 (402)
Q Consensus 171 ~~lGgl~~Li~lL~s----~~~~Ir~~Aa~vLg~~aq----NNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~ 242 (402)
..+..+..++++ .++.+|..|.-.+|+++. +++.|...+++ -....|.+.+.+.+...+..+|.||+|
T Consensus 391 ---e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~-~i~~~l~~~~~~~~~~~~~~~LkaLGN 466 (1056)
T 1lsh_A 391 ---ESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQ-PLHDLLSQSSDRAKEEEIVLALKALGN 466 (1056)
T ss_dssp ---HHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTH-HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHH-HHHHHHHHHHhcCChHHHHHHHHHhhc
Confidence 123344455554 467788777777777663 33222111110 012223333444455556777777777
Q ss_pred HhcCChhcHHHHH
Q 015709 243 LIRNNLAGQEMFY 255 (402)
Q Consensus 243 LiR~~~~~~~~f~ 255 (402)
+ ++|.....+.
T Consensus 467 ~--g~p~~l~~l~ 477 (1056)
T 1lsh_A 467 A--GQPNSIKKIQ 477 (1056)
T ss_dssp H--TCGGGHHHHH
T ss_pred c--CChhHHHHHH
Confidence 6 3455545443
No 109
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=91.40 E-value=2.3 Score=40.24 Aligned_cols=198 Identities=16% Similarity=0.125 Sum_probs=127.7
Q ss_pred hHHHHHHHhhcCCCccccchhhccCCCCHHHHHHhHHHHH----HHHHHcCCCCHHHHHHHHHHHhhc---CCCCHH--H
Q 015709 79 IDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIK----ELMEKLKTPSDAQLIQIAIDDLNN---STLSLE--D 149 (402)
Q Consensus 79 ~~gLLkwsi~~sd~~~~~~~~~~~~~~s~e~l~~r~~~L~----ea~~~l~~~~d~~lMk~al~~L~~---~~~t~e--~ 149 (402)
++.+.+|-.+-.+|+....+-. ++-|||+-.. -.+.++| +-+.+.++.+.+.-. +..+.. +
T Consensus 2 ~~~i~qli~~L~~p~~Re~AL~--------eLsk~Re~~~~La~~LW~S~G--tia~LLQEIisiYp~lspp~Lt~~~Sn 71 (268)
T 2fv2_A 2 REKIYQWINELSSPETRENALL--------ELSKKRESVPDLAPMLWHSFG--TIAALLQEIVNIYPSINPPTLTAHQSN 71 (268)
T ss_dssp CHHHHHHHHHTSSTTTHHHHHH--------HHHHHTTTCTTHHHHHHHSTT--HHHHHHHHHHHTGGGBTTBCCCHHHHH
T ss_pred hHHHHHHHHHhcCchhHHHHHH--------HHHHhhhccccHHHHHHhccC--HHHHHHHHHHHHcccCCCcccCHHHHh
Confidence 4678889888777765321211 1112222111 1334333 345777888887643 333432 3
Q ss_pred H-HHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCC-----CHHHHHHHHHHHHHHhcC-ChHhHHHHHHcCcHHHHH
Q 015709 150 S-QRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHP-----DTDIRKISAWILGKASQN-NPLVQKQVLELGALSKLM 222 (402)
Q Consensus 150 k-~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~-----~~~Ir~~Aa~vLg~~aqN-Np~~Q~~~le~g~L~~Ll 222 (402)
| ..||.-|+-...+.|....|.+.+----|..+|+.. .+-+|-.+..|||.++++ ++++-..+++.+.+|..+
T Consensus 72 RVcnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCL 151 (268)
T 2fv2_A 72 RVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCL 151 (268)
T ss_dssp HHHHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHH
Confidence 3 567777777778899999999998766777777543 367999999999999984 677888889999999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhcCChhcHH-------HHHhc-CcHHHHHHhhcCCCccHHHHHHHHHHHHHHh
Q 015709 223 KMVKSSFVEEAVKALYTVSSLIRNNLAGQE-------MFYVE-AGDLMLQDILGNSSFEIRLHRKAVSLVGDLA 288 (402)
Q Consensus 223 ~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~-------~f~~~-gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~ 288 (402)
+.+..+++--+.-|.|-+.-++-+. .+.. .|... ..+..++.-+... .+.|+-+..+..-..|+
T Consensus 152 rime~GselSKtvAtfIlqKIL~dd-~GL~YiC~t~eRF~av~~vL~~mV~~l~~~-ps~RLLKhiircYlRLs 223 (268)
T 2fv2_A 152 RIMESGSELSKTVATFILQKILLDD-TGLAYICQTYERFSHVAMILGKMVLQLSKE-PSARLLKHVVRCYLRLS 223 (268)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHSH-HHHHHHTSSHHHHHHHHHHHHHHHHHTTTS-CCHHHHHHHHHHHHHHT
T ss_pred HHHhhccHHHHHHHHHHHHHHhccc-hhHHHHHccHHHHHHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHh
Confidence 9999999888899999888887542 3222 23221 1222233323222 25666666666666665
No 110
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=90.94 E-value=2.3 Score=47.49 Aligned_cols=172 Identities=10% Similarity=0.053 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC---hHhHHHHHHcCcHHHHHHh
Q 015709 148 EDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNN---PLVQKQVLELGALSKLMKM 224 (402)
Q Consensus 148 e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNN---p~~Q~~~le~g~L~~Ll~L 224 (402)
+++..+...+..++...-....+. .|.+..|...+.+.... +.|+.+++.+++.. +...-.++ +.+|.++..
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~ 103 (986)
T 2iw3_A 29 DNRHEIASEVASFLNGNIIEHDVP-EHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTN 103 (986)
T ss_dssp TTHHHHHHHHHHHHTSSCSSSSCC-HHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccccccccc-hhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHH
Confidence 445556666666554321111222 36677788888765444 99999999999654 22333333 679999999
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCChh-cHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhH
Q 015709 225 VKSSFVEEAVKALYTVSSLIRNNLA-GQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLF 303 (402)
Q Consensus 225 L~s~~~~vr~kAl~ALS~LiR~~~~-~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l 303 (402)
+.+....||..|-+|+-+++...++ +.. .-++.|...|++.. .=..+.-|+.++..|+.. .+... ..
T Consensus 104 ~~dk~~~v~~aa~~~~~~~~~~~~~~a~~-----~~~~~~~~~~~~~~-kw~~k~~~l~~~~~~~~~-----~~~~~-~~ 171 (986)
T 2iw3_A 104 AGNKDKEIQSVASETLISIVNAVNPVAIK-----ALLPHLTNAIVETN-KWQEKIAILAAFSAMVDA-----AKDQV-AL 171 (986)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHSCGGGHH-----HHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHH-----SHHHH-HH
T ss_pred hcCCchHHHHHHHHHHHHHHHhCCHHHHH-----HHHHHHHHHhcccc-chHHHHHHHHHHHHHHHH-----hHHHH-HH
Confidence 9888889999999999999988555 442 34788888887542 345788899999999852 11111 11
Q ss_pred HhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhc
Q 015709 304 RDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 336 (402)
Q Consensus 304 ~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~ 336 (402)
.=..++|.+.+.+-...+++...|..++..++.
T Consensus 172 ~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~ 204 (986)
T 2iw3_A 172 RMPELIPVLSETMWDTKKEVKAAATAAMTKATE 204 (986)
T ss_dssp HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGG
T ss_pred hccchhcchHhhcccCcHHHHHHHHHHHHHHHh
Confidence 123567777777777777777777776666654
No 111
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=90.93 E-value=0.65 Score=39.66 Aligned_cols=69 Identities=14% Similarity=0.171 Sum_probs=54.5
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCC-hHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 015709 176 LSVLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLI 244 (402)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNN-p~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~Li 244 (402)
+..|..-|++.++.++..|..+|-++++|. +..+..+.....+..|+++++..++.|+.|.+..|-+-.
T Consensus 44 ~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 44 LRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 445666678889999999999999999996 556767766777888888887777888888877666543
No 112
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=90.60 E-value=2.1 Score=47.48 Aligned_cols=147 Identities=12% Similarity=0.076 Sum_probs=82.6
Q ss_pred CCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCC----C-HHHHHHHHHHHHHHhcCChhcHHHHHhcCcH
Q 015709 186 PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS----F-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 260 (402)
Q Consensus 186 ~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~----~-~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi 260 (402)
.+-..+..|++++|.++.......+.-.-...++.|+.+.... + +-++..++|+++...+-..... .++ ...+
T Consensus 465 ~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~-~~l-~~vl 542 (1049)
T 3m1i_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHW-NFL-RTVI 542 (1049)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCH-HHH-HHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHH-HHH-HHHH
Confidence 5667899999999999865443322111112444555543321 1 2345468899987554322211 222 1345
Q ss_pred HHHHHhhcCCCccHHHHHHHHHHHHHHhhcccc---cCC-CCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhc
Q 015709 261 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLE---NMH-KVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 336 (402)
Q Consensus 261 ~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~---~~~-~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~ 336 (402)
+.|...+.++ +++++..|++++.+|+...-. ... ....+.+ ..++..+..++..-+.+-...+..++..++.
T Consensus 543 ~~ll~~l~~~--~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~--~~il~~l~~~~~~~~~~~~~~~~eai~~ii~ 618 (1049)
T 3m1i_C 543 LKLFEFMHET--HEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFI--QTIIRDIQKTTADLQPQQVHTFYKACGIIIS 618 (1049)
T ss_dssp HHHHHHTTSS--CHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHH--HHHHHTHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 6677777764 688999999999999963100 000 0000111 1234444455555566667778888888776
Q ss_pred CC
Q 015709 337 LR 338 (402)
Q Consensus 337 ~~ 338 (402)
..
T Consensus 619 ~~ 620 (1049)
T 3m1i_C 619 EE 620 (1049)
T ss_dssp TC
T ss_pred cC
Confidence 54
No 113
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=90.50 E-value=0.85 Score=39.38 Aligned_cols=72 Identities=11% Similarity=0.067 Sum_probs=57.8
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCC-hHhHHHHHHcCcHHHHHHhhcC------CCHHHHHHHHHHHHHHhcCC
Q 015709 176 LSVLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKS------SFVEEAVKALYTVSSLIRNN 247 (402)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNN-p~~Q~~~le~g~L~~Ll~LL~s------~~~~vr~kAl~ALS~LiR~~ 247 (402)
+..|..-|++.++.++..|..+|-++++|. +..+..|.....+..|+++++. .+..|+.|++.-|-+-...+
T Consensus 40 ~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 118 (148)
T 1mhq_A 40 PWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWF 118 (148)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 445666678999999999999999999994 6788888888999999999974 35788888877666644333
No 114
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=90.35 E-value=11 Score=37.39 Aligned_cols=194 Identities=12% Similarity=0.080 Sum_probs=122.9
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhH
Q 015709 130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQ 209 (402)
Q Consensus 130 ~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q 209 (402)
-+.+-+++....... .++|+..|..+.+++-+.|- ..+ -.-++.++++-..++.+||...+..|+.++...++.-
T Consensus 24 ~~~v~~lln~A~~~~--~~~Kl~~L~q~~EL~l~~dp-sLl--~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~ 98 (386)
T 3o2t_A 24 SERVVDLLNQAALIT--NDSKITVLKQVQELIINKDP-TLL--DNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELL 98 (386)
T ss_dssp HHHHHHHHHHHHHCC--STHHHHHHHHHHHHHHTTCG-GGG--GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHhhhccC--hHHHHHHHHHHHHHHhccCH-HHH--HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555544432 26799999999997544332 222 2457889999888999999999999999997655443
Q ss_pred HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCc--------HH-------HHHHhhcCCCccH
Q 015709 210 KQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG--------DL-------MLQDILGNSSFEI 274 (402)
Q Consensus 210 ~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gG--------i~-------~L~~lL~s~~~d~ 274 (402)
- .+++.|..|+.++++.+.++++.+.+++- +...+.++..++ |. .+...+.+. +.
T Consensus 99 ~-----~~l~~L~~LL~d~d~~V~K~~I~~~tslY---pl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~--n~ 168 (386)
T 3o2t_A 99 L-----KLIANLNMLLRDENVNVVKKAILTMTQLY---KVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSD--ND 168 (386)
T ss_dssp H-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHH---HHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCS--SH
T ss_pred H-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHH---HHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccC--Cc
Confidence 2 35788889998888888888888888874 444444444433 22 334445554 67
Q ss_pred HHHHHHHHHHHHHhhcccc-cCCCC--------------------c-chhHH--hCCcHHHHHHhhcCC--ChHHHHHHH
Q 015709 275 RLHRKAVSLVGDLAKCQLE-NMHKV--------------------E-PPLFR--DRFFLKSVVDLTASA--DLDLQEKAL 328 (402)
Q Consensus 275 klq~kA~~lL~~L~~~~l~-~~~~~--------------------~-~~~l~--~~g~v~~Lv~lL~~~--d~dv~E~aL 328 (402)
.+|..++-++..++..+-. ..++. . ...+. -.+++..|++.+..+ +.-..-.++
T Consensus 169 GVrl~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~l 248 (386)
T 3o2t_A 169 GIRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTAL 248 (386)
T ss_dssp HHHHHHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHH
Confidence 7899999888877642210 00100 0 11222 246777788888764 344555677
Q ss_pred HHHHHHhcCC
Q 015709 329 AAIKNLLQLR 338 (402)
Q Consensus 329 ~aL~~L~~~~ 338 (402)
++|..|+...
T Consensus 249 nsLa~Iak~R 258 (386)
T 3o2t_A 249 GSLANIARQR 258 (386)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHhc
Confidence 7777777543
No 115
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=90.04 E-value=0.79 Score=40.54 Aligned_cols=72 Identities=15% Similarity=0.112 Sum_probs=58.0
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCC-hHhHHHHHHcCcHHHHHHhhcC------CCHHHHHHHHHHHHHHhcCC
Q 015709 176 LSVLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKS------SFVEEAVKALYTVSSLIRNN 247 (402)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNN-p~~Q~~~le~g~L~~Ll~LL~s------~~~~vr~kAl~ALS~LiR~~ 247 (402)
+..|..-|++.++.++..|..+|-++++|. +..+..|.....+..|+++++. .+..|+.|++..|-.-...+
T Consensus 52 ~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 130 (171)
T 1juq_A 52 VRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMAL 130 (171)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 445667788999999999999999999995 5688888888899999999973 24688888887777654433
No 116
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=89.86 E-value=0.87 Score=39.94 Aligned_cols=69 Identities=13% Similarity=0.146 Sum_probs=54.5
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCC-hHhHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHh
Q 015709 176 LSVLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLI 244 (402)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNN-p~~Q~~~le~g~L~~Ll~LL~s-~~~~vr~kAl~ALS~Li 244 (402)
+..|..-|++.++.++..|..+|-++++|. +..+..|.....+..|+++++. .++.|+.|++..|-.-.
T Consensus 54 ~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 54 LKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 335566678899999999999999999995 6688778777888889998875 34788888877665543
No 117
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=89.46 E-value=1.8 Score=37.35 Aligned_cols=72 Identities=15% Similarity=0.087 Sum_probs=57.0
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh-HhHHHHHHcCcHHHHHHhhcC------CCHHHHHHHHHHHHHHhcCC
Q 015709 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNP-LVQKQVLELGALSKLMKMVKS------SFVEEAVKALYTVSSLIRNN 247 (402)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp-~~Q~~~le~g~L~~Ll~LL~s------~~~~vr~kAl~ALS~LiR~~ 247 (402)
+..|..-|++.++.++..|..+|-++++|.. ..+..|.....+..|+++++. .+..|+.|.+..|-+-...+
T Consensus 50 ~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 128 (149)
T 3g2s_A 50 TRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGL 128 (149)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHh
Confidence 4455666788999999999999999999964 467778778889999999974 35788888887777655444
No 118
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=88.91 E-value=13 Score=41.94 Aligned_cols=108 Identities=13% Similarity=0.074 Sum_probs=71.0
Q ss_pred CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcC-CCCHHHHHHHHHHHHHHhcCC-
Q 015709 128 SDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLN-HPDTDIRKISAWILGKASQNN- 205 (402)
Q Consensus 128 ~d~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~-s~~~~Ir~~Aa~vLg~~aqNN- 205 (402)
=|...+..++..+-++ +.+.|..|-+.|..+-.+. ++|..+..+|. +.++.+|..|+.+|-+..+.+
T Consensus 25 ~Dv~~Le~lv~~ly~p--~~~~r~qA~~~L~q~q~sp---------~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W 93 (1073)
T 3gjx_A 25 LDINLLDNVVNCLYHG--EGAQQRMAQEVLTHLKEHP---------DAWTRVDTILEFSQNMNTKYYGLQILENVIKTRW 93 (1073)
T ss_dssp CSHHHHHHHHHTTTCS--SHHHHHHHHHHHHTSSCCS---------CHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTG
T ss_pred CCHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHcCc---------hHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhh
Confidence 3556666666666665 4567888888887765544 36777777774 468899999999999988752
Q ss_pred ---hHhHHHHHHcCcHHHHHHhhcCC-----CHHHHHHHHHHHHHHhcC
Q 015709 206 ---PLVQKQVLELGALSKLMKMVKSS-----FVEEAVKALYTVSSLIRN 246 (402)
Q Consensus 206 ---p~~Q~~~le~g~L~~Ll~LL~s~-----~~~vr~kAl~ALS~LiR~ 246 (402)
|..+...++...+..+.+...++ ++.++.|...+++.+++.
T Consensus 94 ~~L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~ 142 (1073)
T 3gjx_A 94 KILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQ 142 (1073)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHH
Confidence 44555555555666666654332 355667777777776654
No 119
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=88.78 E-value=8 Score=43.25 Aligned_cols=110 Identities=12% Similarity=0.073 Sum_probs=70.2
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhc-CCCCHHHHHHHHHHHHHHhcC
Q 015709 126 TPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQL-NHPDTDIRKISAWILGKASQN 204 (402)
Q Consensus 126 ~~~d~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL-~s~~~~Ir~~Aa~vLg~~aqN 204 (402)
.|-|.+.+..++..+-++. .+.|..|-+.|..+-.+. ++|..+..+| ++.++.+|..|+.++-+..+.
T Consensus 11 ~~~dv~~Le~av~~ly~p~--~~~r~~A~~~L~~~q~sp---------~aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~~ 79 (1023)
T 4hat_C 11 NDLDIALLDQVVSTFYQGS--GVQQKQAQEILTKFQDNP---------DAWQKADQILQFSTNPQSKFIALSILDKLITR 79 (1023)
T ss_dssp SCCCHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHCT---------TGGGGHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCC--hHHHHHHHHHHHHHHcCc---------cHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Confidence 3445666666777766654 246777777776655543 4677777777 456789999999999888874
Q ss_pred ----ChHhHHHHHHcCcHHHHHHhhcCC-----CHHHHHHHHHHHHHHhcC
Q 015709 205 ----NPLVQKQVLELGALSKLMKMVKSS-----FVEEAVKALYTVSSLIRN 246 (402)
Q Consensus 205 ----Np~~Q~~~le~g~L~~Ll~LL~s~-----~~~vr~kAl~ALS~LiR~ 246 (402)
-|..+...++...+..+.+...++ ...++.|...+++.+++.
T Consensus 80 ~W~~L~~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~ 130 (1023)
T 4hat_C 80 KWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQ 130 (1023)
T ss_dssp HGGGSCHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHH
Confidence 244455555555666666554332 234566777777776654
No 120
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=88.64 E-value=0.18 Score=47.18 Aligned_cols=45 Identities=16% Similarity=0.144 Sum_probs=27.6
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHH
Q 015709 177 SVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYT 239 (402)
Q Consensus 177 ~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~A 239 (402)
..|..+++++++.||..|+..++ .+.|..++++++..||..+...
T Consensus 77 ~~l~~L~~D~~~~VR~~aA~~L~------------------~~~L~~ll~D~d~~VR~~aA~~ 121 (244)
T 1lrv_A 77 EALTPLIRDSDEVVRRAVAYRLP------------------REQLSALMFDEDREVRITVADR 121 (244)
T ss_dssp GGGGGGTTCSSHHHHHHHHTTSC------------------SGGGGGTTTCSCHHHHHHHHHH
T ss_pred HHHHHHccCcCHHHHHHHHHHCC------------------HHHHHHHHcCCCHHHHHHHHHh
Confidence 34556778888889888886431 1345555555556666555553
No 121
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=88.55 E-value=3.8 Score=39.64 Aligned_cols=109 Identities=17% Similarity=0.126 Sum_probs=69.4
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcC------cHHHHHHhhcCCC-ccHHHHHHHHHHHHHHhh
Q 015709 217 ALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA------GDLMLQDILGNSS-FEIRLHRKAVSLVGDLAK 289 (402)
Q Consensus 217 ~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~g------Gi~~L~~lL~s~~-~d~klq~kA~~lL~~L~~ 289 (402)
.+..|+ +..+.++.++.+|...|++.+||||++...+.+.- -.+-|..++...+ ....++.+-+..|.-|+.
T Consensus 72 lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~ 150 (315)
T 3qml_C 72 LLANLS-LNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPV 150 (315)
T ss_dssp HHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCC
T ss_pred HHHHHH-hhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhc
Confidence 344444 33344567899999999999999999988665421 1122333333220 123466677788887774
Q ss_pred cccccCCCCcchhHHhCCcHHHHHHhhcCC--ChHHHHHHHHHHHHHhc
Q 015709 290 CQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEKALAAIKNLLQ 336 (402)
Q Consensus 290 ~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~--d~dv~E~aL~aL~~L~~ 336 (402)
++. .|. ...+..|.+++... ++.++.+++..+.-+..
T Consensus 151 ------~~~---~F~-~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f~ 189 (315)
T 3qml_C 151 ------TSE---DLP-IYSTVVLQNVYERNNKDKQLQIKVLELISKILK 189 (315)
T ss_dssp ------CST---TC---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred ------ChH---hhh-hccHHHHHHHHccCCCCHHHHHHHHHHHHHHcc
Confidence 222 122 33457777777666 99999999999988773
No 122
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=87.97 E-value=12 Score=41.53 Aligned_cols=56 Identities=9% Similarity=0.032 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcC
Q 015709 274 IRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 337 (402)
Q Consensus 274 ~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~ 337 (402)
..++..++.++.+.+.. -....+.+..+++.+.+.+. .++++++.|+.+|..++..
T Consensus 209 ~~~~~~aL~~l~~~l~w-------i~~~~~~~~~ll~~l~~~~l-~~~~~~~~a~~~L~~i~~~ 264 (1049)
T 3m1i_C 209 SSLIVATLESLLRYLHW-------IPYRYIYETNILELLSTKFM-TSPDTRAITLKCLTEVSNL 264 (1049)
T ss_dssp HHHHHHHHHHHHHHTTT-------SCTHHHHSSSHHHHHHTHHH-HSHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhh-------CCHHHHhhhhHHHHHHHHhC-CCHhHHHHHHHHHHHHHhC
Confidence 34555566665555432 11223445667776663222 2788999999999999876
No 123
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=86.95 E-value=17 Score=33.36 Aligned_cols=145 Identities=14% Similarity=0.029 Sum_probs=91.8
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHhcCChHhHH--H-HHHcC-cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhc---H
Q 015709 179 LVGQLNHPDTDIRKISAWILGKASQNNPLVQK--Q-VLELG-ALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG---Q 251 (402)
Q Consensus 179 Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~--~-~le~g-~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~---~ 251 (402)
|-.-|.|.+=..|..|..-|..+.++++.... . +...+ ..+.+-+.+.+.+..+..+++-+|..++...... .
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 55678899999999999999998887664321 1 11233 3444556777878899999999999988764321 1
Q ss_pred HHHH--hcCcHHHHHH-hhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHH
Q 015709 252 EMFY--VEAGDLMLQD-ILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKAL 328 (402)
Q Consensus 252 ~~f~--~~gGi~~L~~-lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL 328 (402)
..+. -...++.|+. +|.+. ..+++..|..++..++.. . .... .+++.+...+.+.++.++..++
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~--k~~~~~~a~~~l~~~~~~-----~-~~~~-----~~~e~l~~~l~~Knpkv~~~~l 160 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSS--RATTKTQSMSCILSLCGL-----D-TSIT-----QSVELVIPFFEKKLPKLIAAAA 160 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCC--CHHHHHHHHHHHHHHHHT-----S-SSSH-----HHHHHHGGGGGCSCHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCc--cHHHHHHHHHHHHHHHHh-----c-CcHH-----HHHHHHHHHHhccCHHHHHHHH
Confidence 1221 1233455553 46654 467888888888877742 1 1111 1345566677788888888888
Q ss_pred HHHHHHhc
Q 015709 329 AAIKNLLQ 336 (402)
Q Consensus 329 ~aL~~L~~ 336 (402)
..|..++.
T Consensus 161 ~~l~~~l~ 168 (278)
T 4ffb_C 161 NCVYELMA 168 (278)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877764
No 124
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=86.92 E-value=1.9 Score=37.35 Aligned_cols=68 Identities=12% Similarity=0.055 Sum_probs=53.4
Q ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHhcCC-hHhHHHHHHcCcHHH-HHHhhcC---CCHHHHHHHHHHHHHH
Q 015709 176 LSVLVGQLN-HPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSK-LMKMVKS---SFVEEAVKALYTVSSL 243 (402)
Q Consensus 176 l~~Li~lL~-s~~~~Ir~~Aa~vLg~~aqNN-p~~Q~~~le~g~L~~-Ll~LL~s---~~~~vr~kAl~ALS~L 243 (402)
+..|..-|+ +.++.++..|..+|-++++|. +..+..|.....+.. |++++.. .+..|+.|++..|-.-
T Consensus 55 ~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W 128 (157)
T 1elk_A 55 LRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSW 128 (157)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHH
Confidence 345666676 489999999999999999996 788888888888998 8898853 2357888887666553
No 125
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=86.42 E-value=1.8 Score=39.46 Aligned_cols=69 Identities=16% Similarity=0.191 Sum_probs=53.9
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCC-hHhHHHHHHcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHh
Q 015709 176 LSVLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKSS-FVEEAVKALYTVSSLI 244 (402)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNN-p~~Q~~~le~g~L~~Ll~LL~s~-~~~vr~kAl~ALS~Li 244 (402)
+..|..-|++.++.++..|..+|-++++|. +..+..|.....+..|++++.+. +..|+.|++.-|-.-.
T Consensus 44 ~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 44 FAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 345666778999999999999999999996 55777777777888888888754 3678887776655543
No 126
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=86.38 E-value=2.3 Score=36.22 Aligned_cols=90 Identities=12% Similarity=0.103 Sum_probs=65.4
Q ss_pred HHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHH
Q 015709 235 KALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVD 314 (402)
Q Consensus 235 kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~ 314 (402)
..+-.|+-+++..+.+.. .++..|..-|+++ ++.++..|+.++-.++.+ .++.+...+.+..++..++.
T Consensus 24 ~~ileicD~I~~~~~~~k-----~a~rai~Krl~~~--n~~~ql~AL~LLe~~vkN----cG~~f~~evas~~Fl~el~~ 92 (140)
T 3ldz_A 24 GLILDICDKVGQSRTGPK-----DCLRSIMRRVNHK--DPHVAMQALTLLGACVSN----CGKIFHLEVCSRDFASEVSN 92 (140)
T ss_dssp HHHHHHHHHHTTSTTHHH-----HHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHH----SCHHHHHHHSSHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCcCHH-----HHHHHHHHHHcCC--ChHHHHHHHHHHHHHHHh----cCHHHHHHHhhHHHHHHHHH
Confidence 345567777877654333 2456677777775 678899999999887753 44455556667778888888
Q ss_pred hhcCCChHHHHHHHHHHHHHh
Q 015709 315 LTASADLDLQEKALAAIKNLL 335 (402)
Q Consensus 315 lL~~~d~dv~E~aL~aL~~L~ 335 (402)
++...++.|+++++..+....
T Consensus 93 l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 93 VLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHSCHHHHHHHHHHHHHHH
T ss_pred HhccCCHHHHHHHHHHHHHHH
Confidence 887789999999998887665
No 127
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=86.05 E-value=1.6 Score=40.10 Aligned_cols=70 Identities=14% Similarity=0.221 Sum_probs=54.6
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh-HhHHHHHHcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhc
Q 015709 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNP-LVQKQVLELGALSKLMKMVKSS-FVEEAVKALYTVSSLIR 245 (402)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp-~~Q~~~le~g~L~~Ll~LL~s~-~~~vr~kAl~ALS~LiR 245 (402)
+..|..-|++.++.++..|+.+|-++++|.. ..+..|.....+..|.++++.. +..|+.|++..|-.-..
T Consensus 47 ~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 47 VNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 4456677789999999999999999999954 4677777777888888888653 46788888777766543
No 128
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=86.04 E-value=0.29 Score=45.84 Aligned_cols=21 Identities=19% Similarity=0.102 Sum_probs=15.8
Q ss_pred HHHHHhcCCCCHHHHHHHHHH
Q 015709 177 SVLVGQLNHPDTDIRKISAWI 197 (402)
Q Consensus 177 ~~Li~lL~s~~~~Ir~~Aa~v 197 (402)
+.|..+++++++.||..++.-
T Consensus 101 ~~L~~ll~D~d~~VR~~aA~~ 121 (244)
T 1lrv_A 101 EQLSALMFDEDREVRITVADR 121 (244)
T ss_dssp GGGGGTTTCSCHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHh
Confidence 456677788888888887774
No 129
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=84.95 E-value=6.5 Score=39.15 Aligned_cols=184 Identities=14% Similarity=0.188 Sum_probs=124.4
Q ss_pred HHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhc-CCC
Q 015709 151 QRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK-SSF 229 (402)
Q Consensus 151 ~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~-s~~ 229 (402)
..++|-|--+.++.+-.+-|++..|+..+-...+.++.++-...+..+-.++-...-+.. --...+|.+++.+. +++
T Consensus 261 tR~FDLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t--~L~e~LPFi~~~i~~h~e 338 (619)
T 3c2g_A 261 IRTFDLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKT--PLENILPFLLRLIEIHPD 338 (619)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTS--CCTTHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhc--cccccchHHHHHhccCCC
Confidence 466777777777776667899999999999999999999999999988777643211111 01256888888776 455
Q ss_pred HHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhc-CCC----ccHHHHHHHHHHHHHHhhc--------c-cccC
Q 015709 230 VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILG-NSS----FEIRLHRKAVSLVGDLAKC--------Q-LENM 295 (402)
Q Consensus 230 ~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~-s~~----~d~klq~kA~~lL~~L~~~--------~-l~~~ 295 (402)
+++...-..-|||.+.|..+..+.-+..|++..|-..+. ++. .+-.-+..|+..++|=... . ..++
T Consensus 339 DdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NG 418 (619)
T 3c2g_A 339 DEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNG 418 (619)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTS
T ss_pred cceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCC
Confidence 788888899999999999888888889999999988754 211 2333355566666553321 0 0011
Q ss_pred C-----C---CcchhHHhCCcHHHHHHhhcCC--C----hHHHHHHHHHHHHHhc
Q 015709 296 H-----K---VEPPLFRDRFFLKSVVDLTASA--D----LDLQEKALAAIKNLLQ 336 (402)
Q Consensus 296 ~-----~---~~~~~l~~~g~v~~Lv~lL~~~--d----~dv~E~aL~aL~~L~~ 336 (402)
. + ...-.|++..+++.|..+|+.+ | .+++...++...-++.
T Consensus 419 qr~~~G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlR 473 (619)
T 3c2g_A 419 ETKTAGPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLR 473 (619)
T ss_dssp CCCCCCHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHT
T ss_pred ccccCChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhc
Confidence 1 0 1122456778889999988765 2 2456666665554443
No 130
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=84.67 E-value=4.4 Score=38.27 Aligned_cols=101 Identities=14% Similarity=0.116 Sum_probs=79.3
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHH
Q 015709 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF 254 (402)
Q Consensus 175 gl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f 254 (402)
-+|.|+.=+.++...+|..+-.++..+.+--|. ...++.++.-+++.+.-+|..++..|++++..+...
T Consensus 133 ~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~-------~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~---- 201 (266)
T 2of3_A 133 FVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP-------LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS---- 201 (266)
T ss_dssp HHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG----
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC----
Confidence 468888888888999999999999888753222 224677888888888888999999999998765443
Q ss_pred HhcCcH---HHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015709 255 YVEAGD---LMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (402)
Q Consensus 255 ~~~gGi---~~L~~lL~s~~~d~klq~kA~~lL~~L~~ 289 (402)
...++ +.+..++.++ |..+|.-|+.++..+..
T Consensus 202 -~~~~l~~~~~ia~ll~D~--d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 202 -PLKSLSVEKTVAPFVGDK--DVNVRNAAINVLVACFK 236 (266)
T ss_dssp -GGGGGCHHHHHGGGGGCS--SHHHHHHHHHHHHHHHH
T ss_pred -ccccccchHHHHHHHcCC--CHHHHHHHHHHHHHHHH
Confidence 23478 9999999986 67789999988887764
No 131
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=84.39 E-value=14 Score=35.38 Aligned_cols=148 Identities=13% Similarity=0.010 Sum_probs=88.7
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhc--CCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC--
Q 015709 130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKL--GGLSVLVGQLNHPDTDIRKISAWILGKASQNN-- 205 (402)
Q Consensus 130 ~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~l--Ggl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNN-- 205 (402)
..++..++..+.+ ...+-.+.-++..+.++........-+... ..+..+..++.+++..+|..++.++-|.+--+
T Consensus 146 ~~l~~~l~~~~~~-~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~ 224 (304)
T 3ebb_A 146 AQFSSHLINLLNP-KGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHK 224 (304)
T ss_dssp HHHHHHHHHTTCT-TSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhcCC-CCChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhh
Confidence 3445445555443 335667888899999988876554444432 12333445556689999999999998887421
Q ss_pred -hHhHHHHHHcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHH
Q 015709 206 -PLVQKQVLELGALSKLMKMVKSS-FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVS 282 (402)
Q Consensus 206 -p~~Q~~~le~g~L~~Ll~LL~s~-~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~ 282 (402)
+.. +.. ...+..+..++... +.+....++-||++++...+...+.....|.-..+..+.+.. .+.|+..-+..
T Consensus 225 ~~~~-~~~--~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~-~~~kv~~~~~~ 299 (304)
T 3ebb_A 225 DHNI-EGK--AQCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVS-EPAKVSECCRF 299 (304)
T ss_dssp SCCH-HHH--HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCC-SSHHHHHHHHH
T ss_pred cCCc-hHH--HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCC-CchhHHHHHHH
Confidence 111 111 11455556666543 467788999999999987554444333445555555555543 46776654433
No 132
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=84.01 E-value=2.7 Score=36.24 Aligned_cols=109 Identities=10% Similarity=0.111 Sum_probs=75.6
Q ss_pred cHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccC
Q 015709 217 ALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM 295 (402)
Q Consensus 217 ~L~~Ll~LL~s~~-~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~ 295 (402)
.+..++.-..++. .+.--..+-.|+-+++..+.+.. .++..|..-++++ ++.++..|+.++-.++.+ .
T Consensus 11 ~~~~~IekATs~~l~~~dw~~ileicD~I~~~~~~pk-----~a~ral~krl~~~--n~~v~l~AL~LLe~cvkN----C 79 (149)
T 3g2s_A 11 TLEARINRATNPLNKELDWASINGFCEQLNEDFEGPP-----LATRLLAHKIQSP--QEWEAIQALTVLETCMKS----C 79 (149)
T ss_dssp CHHHHHHHHSCTTCSSCCHHHHHHHHHHGGGSSSHHH-----HHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHH----C
T ss_pred cHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCCcHH-----HHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHh----c
Confidence 3555555555443 12223456677778877654333 2455677777765 788999999999988763 4
Q ss_pred CCCcchhHHhCCcHHHHHHhhcC------CChHHHHHHHHHHHHHhc
Q 015709 296 HKVEPPLFRDRFFLKSVVDLTAS------ADLDLQEKALAAIKNLLQ 336 (402)
Q Consensus 296 ~~~~~~~l~~~g~v~~Lv~lL~~------~d~dv~E~aL~aL~~L~~ 336 (402)
.+.+...+.+..++..|+.++.. .+..|+++++..+..-..
T Consensus 80 G~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 80 GKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp CHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 55666677788899999999863 578999999988887753
No 133
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=81.80 E-value=13 Score=42.19 Aligned_cols=140 Identities=11% Similarity=-0.052 Sum_probs=87.5
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhc--CCCCHHHHHHHHHHHHHHhcCC----h
Q 015709 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQL--NHPDTDIRKISAWILGKASQNN----P 206 (402)
Q Consensus 133 Mk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL--~s~~~~Ir~~Aa~vLg~~aqNN----p 206 (402)
+.+++..+-++..+.+.|..|-+.|..+-.+. .+|..+...| .+.++.+|..|+.++-+.++.+ |
T Consensus 13 l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~ 83 (1204)
T 3a6p_A 13 LVKAVTVMMDPNSTQRYRLEALKFCEEFKEKC---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMS 83 (1204)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHC---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSC
T ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHHhCc---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCC
Confidence 44556666666666677888887777654333 2666666544 4568999999999999988652 3
Q ss_pred HhHHHHHHcCcHHHHHHhhcC---CCHHHHHHHHHHHHHHhcC-ChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHH
Q 015709 207 LVQKQVLELGALSKLMKMVKS---SFVEEAVKALYTVSSLIRN-NLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVS 282 (402)
Q Consensus 207 ~~Q~~~le~g~L~~Ll~LL~s---~~~~vr~kAl~ALS~LiR~-~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~ 282 (402)
.-+...++...+..+...... .+..++.+...+|+.+++. +|.... +-++-|+.+++++ ...+.-++.
T Consensus 84 ~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp-----~ll~~L~~~~~~~---~~~~e~~L~ 155 (1204)
T 3a6p_A 84 RLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWP-----DMLIELDTLSKQG---ETQTELVMF 155 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCT-----THHHHHHHHHHTC---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccch-----HHHHHHHHHhcCC---HHHHHHHHH
Confidence 344445555556655544221 3467899999999998876 342222 3345555555542 233555666
Q ss_pred HHHHHhh
Q 015709 283 LVGDLAK 289 (402)
Q Consensus 283 lL~~L~~ 289 (402)
+|..|+.
T Consensus 156 iL~~L~E 162 (1204)
T 3a6p_A 156 ILLRLAE 162 (1204)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666654
No 134
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=81.57 E-value=3.4 Score=35.51 Aligned_cols=89 Identities=8% Similarity=0.087 Sum_probs=65.2
Q ss_pred HHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHh
Q 015709 236 ALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDL 315 (402)
Q Consensus 236 Al~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~l 315 (402)
..-.|+-+++..+.+.. .++..|..-|+++ ++.++..|+.++-.++.+ .++.+...+.+..++..|+.+
T Consensus 21 ~~leicD~I~~~~~~~k-----~a~rai~krl~~~--n~~vql~AL~LLe~~vkN----CG~~fh~evas~~Fl~eL~kl 89 (148)
T 1mhq_A 21 AIQNFCEQVNTDPNGPT-----HAPWLLAHKIQSP--QEKEALYALTVLEMCMNH----CGEKFHSEVAKFRFLNELIKV 89 (148)
T ss_dssp HHHHHHHHHHHSSHHHH-----HHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHH----SCHHHHHHHTSHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCccHH-----HHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHH----cCHHHHHHHhhHHHHHHHHHH
Confidence 34466667766543322 2456677777775 688999999999988763 455666777788999999999
Q ss_pred hcC------CChHHHHHHHHHHHHHh
Q 015709 316 TAS------ADLDLQEKALAAIKNLL 335 (402)
Q Consensus 316 L~~------~d~dv~E~aL~aL~~L~ 335 (402)
+.. .+..++++++..+..-+
T Consensus 90 ~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 90 LSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp TCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HccccCCCCCCHHHHHHHHHHHHHHH
Confidence 874 37899999998888765
No 135
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=79.78 E-value=3 Score=36.75 Aligned_cols=109 Identities=10% Similarity=0.119 Sum_probs=74.0
Q ss_pred cHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccC
Q 015709 217 ALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM 295 (402)
Q Consensus 217 ~L~~Ll~LL~s~~-~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~ 295 (402)
.+..++.-..++. .+.--..+-.|+-+|+..+.+... ++..|.+-|+++ ++.++..|+.++-.++.+ .
T Consensus 13 ~~~~~IekATs~~l~~~Dw~~ileicD~I~~~~~~~k~-----A~ral~krl~~~--n~~vql~AL~LLd~~vkN----C 81 (171)
T 1juq_A 13 SLESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQI-----AVRLLAHKIQSP--QEWEALQALTVLEACMKN----C 81 (171)
T ss_dssp CHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSTTHHHH-----HHHHHHHHHTCS--SHHHHHHHHHHHHHHHHH----S
T ss_pred cHHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHH-----HHHHHHHHhcCC--CHHHHHHHHHHHHHHHHH----c
Confidence 3455555554432 111223455777788776543332 356677778875 678999999999988763 3
Q ss_pred CCCcchhHHhCCcHHHHHHhhcC------CChHHHHHHHHHHHHHhc
Q 015709 296 HKVEPPLFRDRFFLKSVVDLTAS------ADLDLQEKALAAIKNLLQ 336 (402)
Q Consensus 296 ~~~~~~~l~~~g~v~~Lv~lL~~------~d~dv~E~aL~aL~~L~~ 336 (402)
...+...+.+..++..|+.++.. .+..|+++++..+..-..
T Consensus 82 G~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 82 GRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 44566667778899999999863 378999999988887653
No 136
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=79.13 E-value=3.9 Score=35.69 Aligned_cols=89 Identities=12% Similarity=0.069 Sum_probs=63.6
Q ss_pred HHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHh
Q 015709 236 ALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDL 315 (402)
Q Consensus 236 Al~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~l 315 (402)
..-.|+-+|+..+.+... ++..|..-|+++ ++.++..|+.++-.++.+ ....+...+.+..++..++.+
T Consensus 35 ~~leicD~I~~~~~~~ke-----A~ral~krl~~~--n~~vql~AL~LLd~~vkN----cG~~Fh~evas~~Fl~el~~l 103 (163)
T 1x5b_A 35 LIMDICDKVGSTPNGAKD-----CLKAIMKRVNHK--VPHVALQALTLLGACVAN----CGKIFHLEVCSRDFATEVRAV 103 (163)
T ss_dssp HHHHHHHHHHHSSSHHHH-----HHHHHHHHHTCS--SHHHHHHHHHHHHHHHHH----TCHHHHHHHTSHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCccHHH-----HHHHHHHHHcCC--CHHHHHHHHHHHHHHHHH----hhHHHHHHHhhHHHHHHHHHH
Confidence 344567777765543332 445677777775 678899999999888763 455566666777888888888
Q ss_pred hcC-CChHHHHHHHHHHHHHh
Q 015709 316 TAS-ADLDLQEKALAAIKNLL 335 (402)
Q Consensus 316 L~~-~d~dv~E~aL~aL~~L~ 335 (402)
+.. .++.|+++++..+..-.
T Consensus 104 ~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 104 IKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHTTCCHHHHHHHHHHHHHHH
T ss_pred HccCCCHHHHHHHHHHHHHHH
Confidence 875 58899999998777654
No 137
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=79.00 E-value=3.9 Score=37.55 Aligned_cols=110 Identities=13% Similarity=0.216 Sum_probs=73.3
Q ss_pred CcHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhccccc
Q 015709 216 GALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLEN 294 (402)
Q Consensus 216 g~L~~Ll~LL~s~~-~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~ 294 (402)
+.+..+|.-..++. .+.--..+..|+-+|+..+.+.. .++..|..=|+++ ++.++..|+.+|-.++.+
T Consensus 7 ~~~~~~i~kAT~~~~~~~dw~~ileicD~I~~~~~~~k-----~a~ral~krl~~~--n~~v~l~aL~LLe~~vkN---- 75 (226)
T 3zyq_A 7 GTFERLLDKATSQLLLETDWESILQICDLIRQGDTQAK-----YAVNSIKKKVNDK--NPHVALYALEVMESVVKN---- 75 (226)
T ss_dssp CHHHHHHHHHTCTTCSSCCHHHHHHHHHHHHTTSSCHH-----HHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHH----
T ss_pred chHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHH-----HHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHh----
Confidence 34555665555543 11223455667777776554333 2455677778765 678999999999988864
Q ss_pred CCCCcchhHHhCCcHHHHHHhhcC-CChHHHHHHHHHHHHHhc
Q 015709 295 MHKVEPPLFRDRFFLKSVVDLTAS-ADLDLQEKALAAIKNLLQ 336 (402)
Q Consensus 295 ~~~~~~~~l~~~g~v~~Lv~lL~~-~d~dv~E~aL~aL~~L~~ 336 (402)
....+...+.+..++..|+.+++. .+..|+++++..+...+.
T Consensus 76 cG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 76 CGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred cchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 344455566667777788887764 488999999988887753
No 138
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=78.79 E-value=48 Score=34.02 Aligned_cols=98 Identities=12% Similarity=0.117 Sum_probs=74.6
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcc
Q 015709 221 LMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEP 300 (402)
Q Consensus 221 Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~ 300 (402)
++...+ .+..++.-|..-|....+++|..++. ++..+.+++.+. |..+|+.|+.-|-.+|. + +..
T Consensus 34 Il~~~k-g~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDe--d~~IR~qaik~Lp~~ck------~-~~i 98 (507)
T 3u0r_A 34 ILDGVK-GGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDE--DVSIRRQAIKELPQFAT------G-ENL 98 (507)
T ss_dssp HHHGGG-SCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCS--SHHHHHHHHHHGGGGCC------T-TCH
T ss_pred HHHhcC-CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcc--cHHHHHHHHHhhHHHhh------h-hhh
Confidence 334333 35777888889999999999987665 567889999886 78899999888888884 2 222
Q ss_pred hhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCC
Q 015709 301 PLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 338 (402)
Q Consensus 301 ~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~ 338 (402)
. .++..|+++|.++++.-...+-.+|.+|....
T Consensus 99 ~-----kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~D 131 (507)
T 3u0r_A 99 P-----RVADILTQLLQTDDSAEFNLVNNALLSIFKMD 131 (507)
T ss_dssp H-----HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC
T ss_pred h-----hHHHHHHHHHhccchHHHHHHHHHHHHHHhcC
Confidence 2 45668899999999888888888888887764
No 139
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=77.59 E-value=8.8 Score=32.99 Aligned_cols=88 Identities=17% Similarity=0.112 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCC------CCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHH
Q 015709 149 DSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH------PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLM 222 (402)
Q Consensus 149 ~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s------~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll 222 (402)
.|+.-|..+...+...+....|.+.|.+..+-..|.- |+..||..-..+|.++ |-.++.+.+.|.-..++
T Consensus 36 ~KlklL~~V~~~l~k~~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~l----PI~~e~Lk~SglGkvv~ 111 (145)
T 2xpp_A 36 GKIENVEEISDILMSKALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTM----KIHKEHLVTSGVGKIVY 111 (145)
T ss_dssp HHHHHHHHHHHHHTCTTTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTS----CCCHHHHHHHCHHHHHH
T ss_pred HHHhhHHHHHHHHhhHHHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHC----CCCHHHhhcCCCCcchh
Confidence 6888889999999999999999999999999887752 7889999999999887 44466666665444444
Q ss_pred HhhcCCC--HHHHHHHHHHH
Q 015709 223 KMVKSSF--VEEAVKALYTV 240 (402)
Q Consensus 223 ~LL~s~~--~~vr~kAl~AL 240 (402)
-+-++.. ++.|..|-.-+
T Consensus 112 ~l~k~~~et~~nk~la~~Li 131 (145)
T 2xpp_A 112 FYSINPKESKEVRASAKALV 131 (145)
T ss_dssp HHHHCTTSCHHHHHHHHHHH
T ss_pred hhhcCCccCHHHHHHHHHHH
Confidence 4444433 45565544333
No 140
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=69.60 E-value=24 Score=30.25 Aligned_cols=109 Identities=11% Similarity=0.084 Sum_probs=70.6
Q ss_pred HHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHH-HHHh
Q 015709 237 LYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKS-VVDL 315 (402)
Q Consensus 237 l~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~-Lv~l 315 (402)
.-.|+-+++..+.+... ++..|..-|++. .++.++..|+.++-.++.+ ..+.+...+.+..++.. |+.+
T Consensus 37 ~leicD~I~~~~~~~k~-----a~ral~krl~~~-~n~~v~l~AL~LLd~~vkN----cG~~fh~eva~~~fl~e~Lvk~ 106 (157)
T 1elk_A 37 NMEICDIINETEEGPKD-----ALRAVKKRIVGN-KNFHEVMLALTVLETCVKN----CGHRFHVLVASQDFVESVLVRT 106 (157)
T ss_dssp HHHHHHHHHHSSSHHHH-----HHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHH----SCHHHHHHHTSHHHHHHHTHHH
T ss_pred HHHHHHHHhCCCccHHH-----HHHHHHHHhccC-CCHHHHHHHHHHHHHHHHH----hCHHHHHHHhhHHHHHHHHHHH
Confidence 44566677665443332 445677777642 2678899999999988763 45556666777888888 7888
Q ss_pred hcC---CChHHHHHHHHHHHHHhcCChhhHHHHHhcCCcHHHHHHHHHHhHHhh
Q 015709 316 TAS---ADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVM 366 (402)
Q Consensus 316 L~~---~d~dv~E~aL~aL~~L~~~~~~~~~~~~~~~GL~~~L~~L~~~~~~l~ 366 (402)
+.. ++..|+++++..+..-.. .|++..+ +..+++-|+.|.
T Consensus 107 ~~~k~~~~~~Vk~kil~li~~W~~-------~f~~~p~----l~~i~~~Y~~Lk 149 (157)
T 1elk_A 107 ILPKNNPPTIVHDKVLNLIQSWAD-------AFRSSPD----LTGVVTIYEDLR 149 (157)
T ss_dssp HSTTTCCCHHHHHHHHHHHHHHHH-------HHTTCTT----CHHHHHHHHHHH
T ss_pred hccCCCCcHHHHHHHHHHHHHHHH-------HcCCCcc----hHHHHHHHHHHH
Confidence 843 356899999988876642 3543333 344455555554
No 141
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=68.45 E-value=39 Score=37.46 Aligned_cols=151 Identities=6% Similarity=-0.019 Sum_probs=92.6
Q ss_pred hcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh--cHHHHHhcCc
Q 015709 182 QLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA--GQEMFYVEAG 259 (402)
Q Consensus 182 lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~--~~~~f~~~gG 259 (402)
++.+.++.++..+..||+....--| ...+.+.+.++.+.++|.+ ++++..|+-+|..++..... ....++..=.
T Consensus 201 ~~~~~~~~l~~~~L~~l~s~i~wi~--~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~ 276 (980)
T 3ibv_A 201 YSNAKNYGTVGLCLQVYAQWVSWIN--INLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILN 276 (980)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTTTSC--HHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HhccCCHHHHHHHHHHHHHHHhhcC--HHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHh
Confidence 3345789999999999999997544 3456667889999999975 78899999999988876432 2222332211
Q ss_pred HHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccc-cCCCC-----cchhHH--hCCcHHHHHHhhcCCChHHHHHHHHHH
Q 015709 260 DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLE-NMHKV-----EPPLFR--DRFFLKSVVDLTASADLDLQEKALAAI 331 (402)
Q Consensus 260 i~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~-~~~~~-----~~~~l~--~~g~v~~Lv~lL~~~d~dv~E~aL~aL 331 (402)
+......+.....|..+..+-+.++..++.+-.. ...+. ...... =.++++.+..++..++.++-..++..+
T Consensus 277 L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw 356 (980)
T 3ibv_A 277 LNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFL 356 (980)
T ss_dssp HHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHH
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 1112222221123555666777777665432110 01110 000111 136888999999999889988888887
Q ss_pred HHHhc
Q 015709 332 KNLLQ 336 (402)
Q Consensus 332 ~~L~~ 336 (402)
..++.
T Consensus 357 ~~~l~ 361 (980)
T 3ibv_A 357 SDLLV 361 (980)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77664
No 142
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=63.78 E-value=72 Score=35.82 Aligned_cols=138 Identities=12% Similarity=0.123 Sum_probs=77.8
Q ss_pred CCHHHHHHHHHHHHHHhcCChHhHH-HHHHcCcHHHHHHhhcCCC-----HHHHHHHHHHHHHHhc---CChhcHHHHHh
Q 015709 186 PDTDIRKISAWILGKASQNNPLVQK-QVLELGALSKLMKMVKSSF-----VEEAVKALYTVSSLIR---NNLAGQEMFYV 256 (402)
Q Consensus 186 ~~~~Ir~~Aa~vLg~~aqNNp~~Q~-~~le~g~L~~Ll~LL~s~~-----~~vr~kAl~ALS~LiR---~~~~~~~~f~~ 256 (402)
.+-..+..++|++|.++..-..-.+ .++ -..++.|+.+..... .-++...+|.+|...| .|+. |.
T Consensus 491 ~sW~~lea~~~aigaIag~~~~~~E~~~L-p~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~----~L- 564 (1073)
T 3gjx_A 491 WSWKNLNTLCWAIGSISGAMHEEDEKRFL-VTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWK----FL- 564 (1073)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHH-HHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHH----HH-
T ss_pred CCHHHHhHHHHHHHHHHCcCCcccccchH-HHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHH----HH-
Confidence 3577889999999999865332222 222 235667777665431 1234456688876433 2332 22
Q ss_pred cCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHh------CCcHHHHHHh----hcCCChHHHHH
Q 015709 257 EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD------RFFLKSVVDL----TASADLDLQEK 326 (402)
Q Consensus 257 ~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~------~g~v~~Lv~l----L~~~d~dv~E~ 326 (402)
.--+..|...+.++ +.+++.-|+.++..+|.. .+..++. .-++..++.. ...-+++-...
T Consensus 565 ~~vl~~L~~~m~~~--~~~vq~aA~~af~~i~~~--------C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~ 634 (1073)
T 3gjx_A 565 KTVVNKLFEFMHET--HDGVQDMACDTFIKIAQK--------CRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHT 634 (1073)
T ss_dssp HHHHHHHHHHTTCC--STTHHHHHHHHHHHHHHH--------TGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHH--------HHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHH
Confidence 12345555666654 457899999999999853 1111211 1133333322 22225666777
Q ss_pred HHHHHHHHhcCCh
Q 015709 327 ALAAIKNLLQLRT 339 (402)
Q Consensus 327 aL~aL~~L~~~~~ 339 (402)
...+++.++..-+
T Consensus 635 lyeav~~vi~~~p 647 (1073)
T 3gjx_A 635 FYEAVGYMIGAQT 647 (1073)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCC
Confidence 7777777776643
No 143
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=63.10 E-value=15 Score=31.53 Aligned_cols=73 Identities=10% Similarity=0.122 Sum_probs=52.4
Q ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHhcCCh-HhHHHHHHcCcHHH-HHHhhcCC---CHHHHHHHHHHHHHHhcCCh
Q 015709 176 LSVLVGQLN-HPDTDIRKISAWILGKASQNNP-LVQKQVLELGALSK-LMKMVKSS---FVEEAVKALYTVSSLIRNNL 248 (402)
Q Consensus 176 l~~Li~lL~-s~~~~Ir~~Aa~vLg~~aqNNp-~~Q~~~le~g~L~~-Ll~LL~s~---~~~vr~kAl~ALS~LiR~~~ 248 (402)
+..|..-|+ ++++.++..|..+|-++++|.- ..+..|.....+.. |+++++.. +..|+.|.+..|-+-...++
T Consensus 55 ~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F~ 133 (152)
T 3rru_A 55 VKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQGFP 133 (152)
T ss_dssp HHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHhC
Confidence 344555555 4688888899999999999854 45666666666764 77887643 35789999888888766554
No 144
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=59.24 E-value=15 Score=33.21 Aligned_cols=88 Identities=6% Similarity=0.003 Sum_probs=61.4
Q ss_pred HHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhh
Q 015709 237 LYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLT 316 (402)
Q Consensus 237 l~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL 316 (402)
+-.|+-+++..+.+... ++..|..-|+++ ++.++..|+.+|-.++.+ ..+.+...+.+..++..|+.++
T Consensus 26 ~leicd~i~~~~~~~k~-----a~r~l~krl~~~--n~~~~l~aL~Lle~~vkN----cG~~f~~eva~~~fl~~l~~l~ 94 (220)
T 1dvp_A 26 ILLICDEINQKDVTPKN-----AFAAIKKKMNSP--NPHSSCYSLLVLESIVKN----CGAPVHEEVFTKENCEMFSSFL 94 (220)
T ss_dssp HHHHHHHHHTTSSCHHH-----HHHHHHHHHTCS--SHHHHHHHHHHHHHHHHH----SHHHHHHHHSSHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCcCHHH-----HHHHHHHHHcCC--CHHHHHHHHHHHHHHHhc----cCHHHHHHHHhHHHHHHHHHHh
Confidence 45577777765543332 344566667775 678999999999998864 2334445556667888888877
Q ss_pred cC-CChHHHHHHHHHHHHHh
Q 015709 317 AS-ADLDLQEKALAAIKNLL 335 (402)
Q Consensus 317 ~~-~d~dv~E~aL~aL~~L~ 335 (402)
.. .+..++++++..+..-.
T Consensus 95 ~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 95 ESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHCSCHHHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHH
Confidence 64 47899999998877765
No 145
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=57.09 E-value=1.1e+02 Score=27.38 Aligned_cols=92 Identities=22% Similarity=0.146 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhc-C-C-CCHHHHHHHHHHHHHHhcC----ChHhHHHHHHcCcHHH
Q 015709 148 EDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQL-N-H-PDTDIRKISAWILGKASQN----NPLVQKQVLELGALSK 220 (402)
Q Consensus 148 e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL-~-s-~~~~Ir~~Aa~vLg~~aqN----Np~~Q~~~le~g~L~~ 220 (402)
+.....+....-+++|..---+-.-.-.+|+++.|+ . + ....+|..|+.+++.++.. +|..|..+ +..
T Consensus 61 ~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI-----~~t 135 (196)
T 4atg_A 61 EVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRV-----LKT 135 (196)
T ss_dssp HHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHH-----HHH
T ss_pred HHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHH-----HHH
Confidence 333344555555555433222222234688999887 2 2 2338999999999999964 34455443 345
Q ss_pred HHHhhcCCC--HHHHHHHHHHHHHHh
Q 015709 221 LMKMVKSSF--VEEAVKALYTVSSLI 244 (402)
Q Consensus 221 Ll~LL~s~~--~~vr~kAl~ALS~Li 244 (402)
+.+.+.+++ ....--|++.|+.+-
T Consensus 136 l~k~l~dp~~~l~t~YGAi~GL~~lG 161 (196)
T 4atg_A 136 LKGVWMDPNRSEDSQYGALYCLSILS 161 (196)
T ss_dssp HHHHHTCTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCCCChHHHHHHHHHHHHhH
Confidence 665555433 456778888888773
No 146
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=53.05 E-value=32 Score=36.48 Aligned_cols=161 Identities=16% Similarity=0.075 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcC
Q 015709 148 EDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS 227 (402)
Q Consensus 148 e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s 227 (402)
-.|+.+.+.|--+ -.++.. ...+..++..+..+.=++|-.+.-.|..+ .+-..+ --++++.++.-|++
T Consensus 243 PVRETaAQtLGaL-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL---~DLL~~---Ld~Vv~aVL~GL~D 310 (800)
T 3oc3_A 243 PVRDAAAYLLSRI-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYL---KEFVED---KDGLCRKLVSLLSS 310 (800)
T ss_dssp HHHHHHHHHHHHH-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHT---GGGCCC---HHHHHHHHHHHTTC
T ss_pred ehHHHHHHHHHHH-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHH---HHHHHH---HHHHHHHHHhhcCC
Confidence 3566666666555 333332 34455555555666777777777777766 122211 13567888888888
Q ss_pred CCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCC
Q 015709 228 SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRF 307 (402)
Q Consensus 228 ~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g 307 (402)
.++.||.-|+.+|..++ .+.....++ .--|..|.++ .+=+. .....+.+|+.|+... ... -....
T Consensus 311 ~DDDVRAVAAetLiPIA--~p~~l~~LL-~iLWd~L~~L-DDLSA---STgSVMdLLAkL~s~p-----~~a---~~dp~ 375 (800)
T 3oc3_A 311 PDEDIKLLSAELLCHFP--ITDSLDLVL-EKCWKNIESE-ELISV---SKTSNLSLLTKIYREN-----PEL---SIPPE 375 (800)
T ss_dssp SSHHHHHHHHHHHTTSC--CSSTHHHHH-HHHHHHHHTC-CSCCT---THHHHHHHHHHHHHHC-----TTC---CCCSG
T ss_pred cccHHHHHHHHHhhhhc--chhhHHHHH-HHHHHHhhhh-cccch---hhHHHHHHHHHHHcCC-----ccc---ccChH
Confidence 88999999999999888 343333322 1233333333 21111 2446778889988752 111 11237
Q ss_pred cHHHHHHhhcCCChHHHHHHHHHHHHHh
Q 015709 308 FLKSVVDLTASADLDLQEKALAAIKNLL 335 (402)
Q Consensus 308 ~v~~Lv~lL~~~d~dv~E~aL~aL~~L~ 335 (402)
.+|.|--.|++.=+.||..++++|.+++
T Consensus 376 LVPRL~PFLRHtITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 376 RLKDIFPCFTSPVPEVRTSILNMVKNLS 403 (800)
T ss_dssp GGGGTGGGGTCSSHHHHHHHHHHTTTCC
T ss_pred HHHHHHhhhcCCcHHHHHHHHHHHHHHH
Confidence 8888888999999999999999998877
No 147
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=50.34 E-value=1.9e+02 Score=28.15 Aligned_cols=134 Identities=11% Similarity=0.042 Sum_probs=101.0
Q ss_pred HHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcC---cHHHHHHhhcCCCHH
Q 015709 155 QELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELG---ALSKLMKMVKSSFVE 231 (402)
Q Consensus 155 ~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g---~L~~Ll~LL~s~~~~ 231 (402)
.-|.+++..-..|.-+-..+-+..+..+...++=+|-.-|...+-.+-..++..-..++..+ .+...-+|+.|++=-
T Consensus 145 ~mLRecir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYV 224 (341)
T 1upk_A 145 IMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYV 224 (341)
T ss_dssp HHHHHHHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcch
Confidence 34555555544555555556666788889999999999999999999888887777777764 467778899998877
Q ss_pred HHHHHHHHHHHHhcC--ChhcHHHHHh-cCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015709 232 EAVKALYTVSSLIRN--NLAGQEMFYV-EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (402)
Q Consensus 232 vr~kAl~ALS~LiR~--~~~~~~~f~~-~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~ 290 (402)
+|..++--|+-++-+ |......++. ..-+..++.+|+++ ...+|..|...+.-++.+
T Consensus 225 TkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~--sk~Iq~EAFhVFKvFVAN 284 (341)
T 1upk_A 225 TKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK--SRNIQFEAFHVFKVFVAN 284 (341)
T ss_dssp HHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc--hhchhhhhhhheeeeeeC
Confidence 899999999997755 5554555554 45788899999987 455788998888877653
No 148
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=49.82 E-value=79 Score=26.92 Aligned_cols=81 Identities=12% Similarity=0.104 Sum_probs=58.5
Q ss_pred ChHhHHHHHHcCcHHHHHHhhcCC------CHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHH
Q 015709 205 NPLVQKQVLELGALSKLMKMVKSS------FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHR 278 (402)
Q Consensus 205 Np~~Q~~~le~g~L~~Ll~LL~s~------~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~ 278 (402)
....|..|++.|++..+-.-|.-- +..+|...+-+|+.+ |-..+.+.+.|--..+.-+-+++...+..|+
T Consensus 50 k~~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~l----PI~~e~Lk~SglGkvv~~l~k~~~et~~nk~ 125 (145)
T 2xpp_A 50 SKALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTM----KIHKEHLVTSGVGKIVYFYSINPKESKEVRA 125 (145)
T ss_dssp CTTTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTS----CCCHHHHHHHCHHHHHHHHHHCTTSCHHHHH
T ss_pred hHHHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHC----CCCHHHhhcCCCCcchhhhhcCCccCHHHHH
Confidence 455799999999999999888742 246788888888876 4445566666555555555557766788899
Q ss_pred HHHHHHHHHhh
Q 015709 279 KAVSLVGDLAK 289 (402)
Q Consensus 279 kA~~lL~~L~~ 289 (402)
.|-.++..-..
T Consensus 126 la~~Li~~WsR 136 (145)
T 2xpp_A 126 SAKALVQKWTN 136 (145)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99888876553
No 149
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=49.79 E-value=2.5e+02 Score=31.24 Aligned_cols=96 Identities=10% Similarity=0.074 Sum_probs=59.0
Q ss_pred CHHHHHHhcCC-------CCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhc--CCCHHHHHHHHHHHHHHhc
Q 015709 175 GLSVLVGQLNH-------PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK--SSFVEEAVKALYTVSSLIR 245 (402)
Q Consensus 175 gl~~Li~lL~s-------~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~--s~~~~vr~kAl~ALS~LiR 245 (402)
.++.|..+|.. ....||..|.++|..++...|+. +-+.|++++. ..+.++|..|+..| .+
T Consensus 472 ~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~--------v~~il~~i~~n~~e~~EvRiaA~~~L---m~ 540 (1056)
T 1lsh_A 472 SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK--------VQEIVLPIFLNVAIKSELRIRSCIVF---FE 540 (1056)
T ss_dssp GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH--------HHHHHHHHHHCTTSCHHHHHHHHHHH---HH
T ss_pred HHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHH--------HHHHHHHHhcCCCCChHHHHHHHHHH---HH
Confidence 46777777742 23568888999999998777642 2245667774 34578888877766 34
Q ss_pred CChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015709 246 NNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (402)
Q Consensus 246 ~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~ 289 (402)
.+|+. .-+..|...+..+. +..+..-....|.+|+.
T Consensus 541 t~P~~-------~~l~~ia~~l~~E~-~~QV~sfv~S~l~sla~ 576 (1056)
T 1lsh_A 541 SKPSV-------ALVSMVAVRLRREP-NLQVASFVYSQMRSLSR 576 (1056)
T ss_dssp TCCCH-------HHHHHHHHHHTTCS-CHHHHHHHHHHHHHHTT
T ss_pred HCcCH-------HHHHHHHHHHhhCc-hHHHHHHHHHHHHHHHh
Confidence 45542 12344566666542 45566556666666653
No 150
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=45.85 E-value=2e+02 Score=32.43 Aligned_cols=131 Identities=8% Similarity=-0.042 Sum_probs=83.4
Q ss_pred CCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhh--cCCCHHHHHHHHHHHHHHhcCC----hhcHHHHHhcCc
Q 015709 186 PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV--KSSFVEEAVKALYTVSSLIRNN----LAGQEMFYVEAG 259 (402)
Q Consensus 186 ~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL--~s~~~~vr~kAl~ALS~LiR~~----~~~~~~f~~~gG 259 (402)
++++.|..|-..|..+-++ | .+...+...| .+.+..+|.-|+-.|-+.++.+ ++.....++..-
T Consensus 25 ~~~~~r~~Ae~~L~~~~~~-p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~l 94 (1204)
T 3a6p_A 25 STQRYRLEALKFCEEFKEK-C---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSV 94 (1204)
T ss_dssp CCHHHHHHHHHHHHHHHHH-C---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhC-c---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence 4778898888888776443 2 1334444433 3445788988888888877652 333444455445
Q ss_pred HHHHHHhhcCC-CccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhc
Q 015709 260 DLMLQDILGNS-SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 336 (402)
Q Consensus 260 i~~L~~lL~s~-~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~ 336 (402)
+..+...-... ..+..+|.+.+.++..++... -+..- ..+++.+++++.+ +...++.++.+|..|..
T Consensus 95 l~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d----~p~~W-----p~ll~~L~~~~~~-~~~~~e~~L~iL~~L~E 162 (1204)
T 3a6p_A 95 MELIANGTLNILEEENHIKDALSRIVVEMIKRE----WPQHW-----PDMLIELDTLSKQ-GETQTELVMFILLRLAE 162 (1204)
T ss_dssp HHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHH----STTTC-----TTHHHHHHHHHHT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhccccccccHHHHHHHHHHHHHHHHHh----Ccccc-----hHHHHHHHHHhcC-CHHHHHHHHHHHHHHHH
Confidence 55544432110 125779999999999998642 22222 3567788888876 56778889988888864
No 151
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=45.35 E-value=2.5e+02 Score=28.12 Aligned_cols=128 Identities=12% Similarity=0.131 Sum_probs=73.5
Q ss_pred HHHHHHHHHHccCCCCchhHHHhcCCHHHHH-HhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCC
Q 015709 150 SQRALQELLILVEPIDNANDLSKLGGLSVLV-GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS 228 (402)
Q Consensus 150 k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li-~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~ 228 (402)
+..++|-|+.++-....+..+.. ++ ..+.+.++..+..++++++|+-++-+.-+..+........+++.+.+.
T Consensus 243 ~FPaLDLLRl~v~~p~~~~~l~~------li~~~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~ 316 (425)
T 3pst_A 243 KTPAYDIVRLIVKKLPYSSDIKD------YIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTE 316 (425)
T ss_dssp CHHHHHHHHHHGGGCSCGGGGHH------HHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCC
T ss_pred ccHHHHHHHHHHcCCchHHHHHH------HHHHhcCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHH
Confidence 77799999998877776654332 33 234466899999999999999986543444443322356666665421
Q ss_pred ----C----HHHHHH---HHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhc-----C--CCccHHHHHHHHHHHHHHhh
Q 015709 229 ----F----VEEAVK---ALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILG-----N--SSFEIRLHRKAVSLVGDLAK 289 (402)
Q Consensus 229 ----~----~~vr~k---Al~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~-----s--~~~d~klq~kA~~lL~~L~~ 289 (402)
. ..++.. .++-+|.+....+.. ......+..++. . ...+....-+++-++.+|+.
T Consensus 317 l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~~------~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~ 389 (425)
T 3pst_A 317 FSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD------LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 389 (425)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCSC------TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred hhhcccCCCchHHHHHHHHHHHHHHHHhcccch------HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 1 223322 234444433221111 122334555554 1 01245577788889998874
No 152
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=44.20 E-value=1.9e+02 Score=26.60 Aligned_cols=118 Identities=12% Similarity=0.007 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHH-hcCCCCHHHHHHHHHHHHHHhc-CChHhHHHHHHcCcHHHHHHhh
Q 015709 148 EDSQRALQELLILVEPIDNANDLSKLGGLSVLVG-QLNHPDTDIRKISAWILGKASQ-NNPLVQKQVLELGALSKLMKMV 225 (402)
Q Consensus 148 e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~-lL~s~~~~Ir~~Aa~vLg~~aq-NNp~~Q~~~le~g~L~~Ll~LL 225 (402)
+.|.-|..-|-.+ . .+ ...|+.+.. +-..++=.||..++.+++..+. .+|+. .++.+....
T Consensus 86 eVR~~Av~lLg~~-~-~~-------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~--------~l~~~~~W~ 148 (240)
T 3l9t_A 86 QVRMYAVFLFGYL-S-KD-------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK--------ALPIIDEWL 148 (240)
T ss_dssp HHHHHHHHHHHHT-T-TS-------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT--------THHHHHHHH
T ss_pred HHHHHHHHHHHhc-c-Cc-------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH--------HHHHHHHHh
Confidence 5666666655554 2 11 113455555 3456778899999999999985 55542 678888999
Q ss_pred cCCCHHHHHHHHHHHHHHhcC--ChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015709 226 KSSFVEEAVKALYTVSSLIRN--NLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (402)
Q Consensus 226 ~s~~~~vr~kAl~ALS~LiR~--~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~ 289 (402)
.+++..+|..|+-.+---+.. .....+ -.++.|..+..++ +.-+|+-..+.|.++..
T Consensus 149 ~d~n~~VRR~Ase~~rpW~~~~~~k~dp~-----~ll~iL~~L~~D~--s~yVrKSVan~LrD~SK 207 (240)
T 3l9t_A 149 KSSNLHTRRAATEGLRIWTNRPYFKENPN-----EAIRRIADLKEDV--SEYVRKSVGNALRDISK 207 (240)
T ss_dssp HCSSHHHHHHHHHHTCSGGGSTTTTTCHH-----HHHHHHHTTTTCS--CHHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHhhHHHhccchhhcCHH-----HHHHHHHHhcCCh--HHHHHHHHHHHHHHHhh
Confidence 999999988777665321111 111111 1345555555554 67789999999999984
No 153
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=42.04 E-value=2.6e+02 Score=27.34 Aligned_cols=128 Identities=12% Similarity=0.139 Sum_probs=72.0
Q ss_pred HHHHHHHHHHccCCCCchhHHHhcCCHHHHH-HhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcC-
Q 015709 150 SQRALQELLILVEPIDNANDLSKLGGLSVLV-GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS- 227 (402)
Q Consensus 150 k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li-~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s- 227 (402)
+..++|-|+.++-+...+..+.. ++ ..+.+..+..+..++++++|+-++...-+..+........+++.+.+
T Consensus 180 ~FP~LDLLRl~v~~~~~~~~l~~------li~~~~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~ 253 (362)
T 3l3f_X 180 KTPAYDIVRLIVKKLPYSSDIKD------YIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTE 253 (362)
T ss_dssp CHHHHHHHHHHGGGCSCGGGGHH------HHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSC
T ss_pred cchHHHHHHHHhcCCChHHHHHH------HHHHhcCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHH
Confidence 77899999998877776654332 33 23446689999999999999998654334444322123445554422
Q ss_pred ---CC----HHHHHH---HHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhc-----CC--CccHHHHHHHHHHHHHHhh
Q 015709 228 ---SF----VEEAVK---ALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILG-----NS--SFEIRLHRKAVSLVGDLAK 289 (402)
Q Consensus 228 ---~~----~~vr~k---Al~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~-----s~--~~d~klq~kA~~lL~~L~~ 289 (402)
.. ..++.. .++-+|.+....+.. ......+..++. .. ..+....-+++-++.+|+.
T Consensus 254 ~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~~------~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~ 326 (362)
T 3l3f_X 254 FSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD------LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 326 (362)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCSC------TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred hhhcccCCCchHHHHHHHHHHHHHHHHhcccch------HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 11 223332 233344333221111 123344555554 10 1245577889999999884
No 154
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=42.02 E-value=2.1e+02 Score=26.37 Aligned_cols=132 Identities=8% Similarity=0.031 Sum_probs=83.2
Q ss_pred HhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhc-CChhcHHHHHhcC
Q 015709 181 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK-SSFVEEAVKALYTVSSLIR-NNLAGQEMFYVEA 258 (402)
Q Consensus 181 ~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~-s~~~~vr~kAl~ALS~LiR-~~~~~~~~f~~~g 258 (402)
.+.+++..++|..|+.+||.+ . + .. ..++.+...+. .++=.|+.-+..+++.++. .+|..
T Consensus 78 ~L~~~~~deVR~~Av~lLg~~-~--~-~~------~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~-------- 139 (240)
T 3l9t_A 78 LAYQSDVYQVRMYAVFLFGYL-S--K-DK------EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK-------- 139 (240)
T ss_dssp HHHTCSSHHHHHHHHHHHHHT-T--T-SH------HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT--------
T ss_pred HHHhCcchHHHHHHHHHHHhc-c--C-cH------HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH--------
Confidence 455888899999999999988 2 1 11 24666666444 3444678888888888774 33431
Q ss_pred cHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHHHHHHHHHHHHhcCC
Q 015709 259 GDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 338 (402)
Q Consensus 259 Gi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~ 338 (402)
-++.+...++++ +.-+|+-|.-.+.--+. .+..... -.-+++.|..+...++..+|..+..+|..++...
T Consensus 140 ~l~~~~~W~~d~--n~~VRR~Ase~~rpW~~------~~~~k~d--p~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~ 209 (240)
T 3l9t_A 140 ALPIIDEWLKSS--NLHTRRAATEGLRIWTN------RPYFKEN--PNEAIRRIADLKEDVSEYVRKSVGNALRDISKKF 209 (240)
T ss_dssp THHHHHHHHHCS--SHHHHHHHHHHTCSGGG------STTTTTC--HHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCC--CHHHHHHHHHhhHHHhc------cchhhcC--HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhC
Confidence 445677777876 67788866555432221 0111000 0124455555566668889999999999998875
Q ss_pred hh
Q 015709 339 TT 340 (402)
Q Consensus 339 ~~ 340 (402)
++
T Consensus 210 Pd 211 (240)
T 3l9t_A 210 PD 211 (240)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 155
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=42.00 E-value=2e+02 Score=26.34 Aligned_cols=164 Identities=12% Similarity=0.124 Sum_probs=91.2
Q ss_pred CCCHHHHHHhHHHHHHHHHHcCCCCHHH-HHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHH-H
Q 015709 104 RLSPSELKKRQMEIKELMEKLKTPSDAQ-LIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLV-G 181 (402)
Q Consensus 104 ~~s~e~l~~r~~~L~ea~~~l~~~~d~~-lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li-~ 181 (402)
+++|+++. -+..++..+ ++..+ +..-+.+++.+= + .+..++|-++-++-+...+..+.. ++ .
T Consensus 34 ~ls~~el~----~l~~~l~~l--~~~~~~~~~~~~ki~~~W--P--~~fP~lDllRl~~~~~~~~~~l~~------~l~~ 97 (253)
T 3gae_A 34 TFDDEILA----QIGGALHDI--DESWELLLSFANTIRSNW--E--IKTPAYDIVRLIVKKLPYSSDIKD------YIEE 97 (253)
T ss_dssp CSCHHHHH----HHHHHHTCH--HHHHHHHHHHHHHHHHHC--S--CCHHHHHHHHHHGGGCSCGGGGHH------HHHH
T ss_pred CCCHHHHH----HHHHHHhcc--cccHHHHHHHHHHHHHhC--C--ccchHHHHHHHHHcCCchHHHHHH------HHHH
Confidence 78998763 344444211 11122 223333444332 2 477899999998877776655443 22 2
Q ss_pred hcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcC----C----CHHHHHH---HHHHHHHHhcCChhc
Q 015709 182 QLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS----S----FVEEAVK---ALYTVSSLIRNNLAG 250 (402)
Q Consensus 182 lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s----~----~~~vr~k---Al~ALS~LiR~~~~~ 250 (402)
.+.+.++..+..++++++|+.++.+..++.+........++..+.+ . +..++.. .++-+|....+.+.
T Consensus 98 ~~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~- 176 (253)
T 3gae_A 98 GLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS- 176 (253)
T ss_dssp HTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS-
T ss_pred hcCCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc-
Confidence 3346678999999999999998765456666544334555554422 1 2234443 34444444333221
Q ss_pred HHHHHhcCcHHHHHHhhcC----C---CccHHHHHHHHHHHHHHhh
Q 015709 251 QEMFYVEAGDLMLQDILGN----S---SFEIRLHRKAVSLVGDLAK 289 (402)
Q Consensus 251 ~~~f~~~gGi~~L~~lL~s----~---~~d~klq~kA~~lL~~L~~ 289 (402)
+......+..++.. . ..+.....+++-++.+|+.
T Consensus 177 -----~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~ 217 (253)
T 3gae_A 177 -----DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 217 (253)
T ss_dssp -----CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHH
T ss_pred -----hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHh
Confidence 12233344444442 1 1245577889999999985
No 156
>1n4k_A Inositol 1,4,5-trisphosphate receptor type 1; IP3 receptor, IP3-binding core, calcium channel,protein- ligand complex, B-trefoil fold; HET: I3P; 2.20A {Mus musculus} SCOP: a.118.22.1 b.42.6.1
Probab=40.34 E-value=2.2e+02 Score=27.79 Aligned_cols=111 Identities=18% Similarity=0.231 Sum_probs=66.5
Q ss_pred HHHHHHHHHhhcCCCCHHHH---HHHHHHHHHccCCCCc----------------h-hHHHhcCCHHHHHHhcCCC---C
Q 015709 131 QLIQIAIDDLNNSTLSLEDS---QRALQELLILVEPIDN----------------A-NDLSKLGGLSVLVGQLNHP---D 187 (402)
Q Consensus 131 ~lMk~al~~L~~~~~t~e~k---~~AL~~L~~Lve~iDn----------------A-~~l~~lGgl~~Li~lL~s~---~ 187 (402)
.++...+..+.+...+..++ ..+|++|..++.+.++ . +-|...|.+..|+.+|..+ +
T Consensus 228 ~~l~~f~~~l~~~~i~~~~~~~v~~~L~dLi~F~~~~~~~~~~~l~~~~g~p~r~RQkLlrEq~il~ll~~iL~~~f~~~ 307 (381)
T 1n4k_A 228 KVLGSIAGKLEKGTITQNERRSVTKLLEDLVYFVTGGTNSGQDVLEVVFSKPNRERQKLMREQNILKQIFKLLQAPFTDC 307 (381)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHTTTSCCSSCSGGGGGCCCCHHHHHHHHHTTHHHHHHHHHHGGGC--
T ss_pred HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHhcCcchhcccchhhhcCCccHHHHHHHHhhChHHHHHHHHHhhcccc
Confidence 44555666666555554433 4556666666655432 1 2356678888888888543 1
Q ss_pred -------------------HHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh
Q 015709 188 -------------------TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNL 248 (402)
Q Consensus 188 -------------------~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~ 248 (402)
..|-...-.+|..++++|.++|..+.+. ++.+...+.. ..-|.-+|..++.+|.
T Consensus 308 ~~~~~~~~~~l~~~~~~~~~~i~~l~Y~LL~~~~~~~r~Nq~y~ak~--~~~~q~qig~-----~~~a~d~i~~ll~nN~ 380 (381)
T 1n4k_A 308 GDGPMLRLEELGDQRHAPFRHICRLCYRVLRHSQQDYRKNQEYIAKQ--FGFMQKQIGY-----DVLAEDTITALLHNNR 380 (381)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH--HHHHHHHHCT-----THHHHHHHHHHHTTC-
T ss_pred CccchhhHHHhcchhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH--HHHHHHHhCc-----cccHHHHHHHHHhcCC
Confidence 1255567788888899999999887653 5555544432 1334555666666553
No 157
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=36.56 E-value=1.5e+02 Score=24.75 Aligned_cols=90 Identities=7% Similarity=0.061 Sum_probs=58.6
Q ss_pred CCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHH
Q 015709 186 PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQD 265 (402)
Q Consensus 186 ~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~ 265 (402)
+-+.|...+.|++-+ .+.-..++ ..+-+-+...+++-+.-++|-+-+++++...-....+..+-.+.+.+
T Consensus 23 Sk~~I~~LT~~a~~~-----~~~a~~Iv-----~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~ 92 (144)
T 1sz9_A 23 SRPIITTLTKLAEEN-----ISCAQYFV-----DAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKR 92 (144)
T ss_dssp CHHHHHHHHHHHHHT-----GGGHHHHH-----HHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHH
T ss_pred cHhHHHHHHHHHHHH-----HHHHHHHH-----HHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 445666666666554 33333332 33334444567788999999999999986555555666777788888
Q ss_pred hhcCCCccHHHHHHHHHHHHHH
Q 015709 266 ILGNSSFEIRLHRKAVSLVGDL 287 (402)
Q Consensus 266 lL~s~~~d~klq~kA~~lL~~L 287 (402)
..... +...|.|...++.-=
T Consensus 93 ~~~~~--d~~~r~k~~rL~~~W 112 (144)
T 1sz9_A 93 TYLLV--DNTTRTKLINMFKLW 112 (144)
T ss_dssp HHHTS--CHHHHHHHHHHHHHH
T ss_pred HHHhC--CHHHHHHHHHHHHHH
Confidence 77653 566787777766543
No 158
>3hjl_A Flagellar motor switch protein FLIG; armadillo repeat motif, superhelix, conformational plasticit repeat, torque generation; 2.40A {Aquifex aeolicus}
Probab=35.81 E-value=1.1e+02 Score=29.56 Aligned_cols=73 Identities=14% Similarity=0.092 Sum_probs=38.3
Q ss_pred HHHHhcC-ChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHH----------------HHhcCcH
Q 015709 198 LGKASQN-NPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEM----------------FYVEAGD 260 (402)
Q Consensus 198 Lg~~aqN-Np~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~----------------f~~~gGi 260 (402)
|+++.+| +|..+..++.+=--..=-.+|..=+++.+...++.|+.+-.-+|...+. +-..||+
T Consensus 121 la~~i~~EhPQtiAlILs~L~p~~AA~vL~~Lp~~~r~ev~~Ria~l~~v~p~~l~~le~~L~~~l~~~~~~~~~~~gG~ 200 (329)
T 3hjl_A 121 LASLLKNEHPQTIALFLSQLSPKKSAEIIQNLPEELKKEVVKRIATLENVNVQYVKELAQILLEEISSLGAKEALKLEGT 200 (329)
T ss_dssp HHHHHTTSCHHHHHHHHTTSCHHHHHHHHHTSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHhCCHHHHHHHHHcCCHHHHHHHHHhCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhcccccccccccH
Confidence 3444433 5555555554422222223333334555666666666665545543222 2236899
Q ss_pred HHHHHhhcCC
Q 015709 261 LMLQDILGNS 270 (402)
Q Consensus 261 ~~L~~lL~s~ 270 (402)
..+..+|+.-
T Consensus 201 ~~vA~ILN~~ 210 (329)
T 3hjl_A 201 AVAAELLNTL 210 (329)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHhcC
Confidence 9999998853
No 159
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=35.51 E-value=1.9e+02 Score=25.21 Aligned_cols=78 Identities=13% Similarity=0.085 Sum_probs=0.0
Q ss_pred CChHhHHHHHHcCcHHHHHHhhcC------CCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHH
Q 015709 204 NNPLVQKQVLELGALSKLMKMVKS------SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLH 277 (402)
Q Consensus 204 NNp~~Q~~~le~g~L~~Ll~LL~s------~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq 277 (402)
+....|..|++.|++..+-..|.- ++-.+|...+-+|..+ |-..+.+...|--.+++-+-+++......|
T Consensus 64 ~k~~L~~~~ld~giL~~l~~WLePLpDgSLP~~~Ir~~lL~~L~~l----PI~~e~Lk~SglGkvV~~l~k~~~et~~nk 139 (170)
T 3nfq_A 64 SKANLADTILDNNLLQSVRIWLEPLPDGSLPSFEIQKSLFAALNDL----PVKTEHLKESGLGRVVIFYTKSKRVEAQLA 139 (170)
T ss_dssp TCGGGHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTS----CCCHHHHHHHSHHHHHHHHHHCTTSCHHHH
T ss_pred hHHHHHHHHHHcchHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHC----CCCHHHHhhCCCCceeeehhcCCcccHHHH
Q ss_pred HHHHHHHH
Q 015709 278 RKAVSLVG 285 (402)
Q Consensus 278 ~kA~~lL~ 285 (402)
+.|-.++.
T Consensus 140 rla~~Li~ 147 (170)
T 3nfq_A 140 RLAEKLIA 147 (170)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
No 160
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=34.42 E-value=39 Score=27.66 Aligned_cols=62 Identities=16% Similarity=0.334 Sum_probs=44.1
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC
Q 015709 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNN 247 (402)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~ 247 (402)
+...++-|+.+...|+..+.||+-+.-. -..+ +..+.+-+...+++-|...+|-+..++++.
T Consensus 10 l~~~L~~L~~s~~sI~~~s~w~l~h~~~-----a~~I-----v~~i~~~l~~~~~~~KL~~LYL~ndIl~ns 71 (132)
T 4flb_A 10 LDRKFQSVTNTMESIQGLSSWCIENKKH-----HSTI-----VYHWMKWLRRSAYPHRLNLFYLANDVIQNC 71 (132)
T ss_dssp HHHHHHHCCSSHHHHHHHHHHHHHTGGG-----HHHH-----HHHHHHHHHHSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCcccHHHHHHHHHHHHHhHHH-----HHHH-----HHHHHHHHHcCChhhHHHHHHHHHHHHHHh
Confidence 4455666777889999999999976532 2222 334444555567777899999999999875
No 161
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=26.86 E-value=1e+02 Score=34.34 Aligned_cols=161 Identities=16% Similarity=0.095 Sum_probs=86.3
Q ss_pred HHHHc-CCCCHHHHHHHHHHHhhcCC---CCHHHHHHHHHHHHHccC----CCCchhHHHhcCCHHHHHHhcCCCC-HHH
Q 015709 120 LMEKL-KTPSDAQLIQIAIDDLNNST---LSLEDSQRALQELLILVE----PIDNANDLSKLGGLSVLVGQLNHPD-TDI 190 (402)
Q Consensus 120 a~~~l-~~~~d~~lMk~al~~L~~~~---~t~e~k~~AL~~L~~Lve----~iDnA~~l~~lGgl~~Li~lL~s~~-~~I 190 (402)
++..+ ..|-..+.+...++.+.... .+- .|..+|.-++-++- -+.... +...+..++.+|.++. .+|
T Consensus 785 ~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~---~~~i~~~v~~~L~D~q~~EV 860 (997)
T 1vsy_5 785 LYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEE---KNKILEFVVSNLYNEQFVEV 860 (997)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTH---HHHTHHHHTTTTTCSSCHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHH---HHHHHHHHHHHhcCCccHHH
Confidence 35555 34555666676777665422 244 67777666554331 111111 1234778889999999 999
Q ss_pred HHHHHHHHHHHhcCC-h-HhHHHHHH---cCc-----HHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcH--HHHHhcC
Q 015709 191 RKISAWILGKASQNN-P-LVQKQVLE---LGA-----LSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQ--EMFYVEA 258 (402)
Q Consensus 191 r~~Aa~vLg~~aqNN-p-~~Q~~~le---~g~-----L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~--~~f~~~g 258 (402)
|..|+.+|+.+.++. + .....+++ ... ...+-+-.. .+...+-.|+.+||+++..+|... -.++ -.
T Consensus 861 Re~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~~-~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~-P~ 938 (997)
T 1vsy_5 861 RVRAASILSDIVHNWKEEQPLLSLIERFAKGLDVNKYTSKERQKLS-KTDIKIHGNVLGLGAIISAFPYVFPLPPWI-PK 938 (997)
T ss_dssp HHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTTTSSCHHHHHHHH-HHCHHHHHHHHHHHHHHTTCSCCSSCCTHH-HH
T ss_pred HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhcccccccccccc-hHHHHHHHHHHHHHHHHhhCCCCCCCCccc-HH
Confidence 999999999999887 5 33222221 111 111111000 000235578888999888887643 1221 01
Q ss_pred cHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015709 259 GDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (402)
Q Consensus 259 Gi~~L~~lL~s~~~d~klq~kA~~lL~~L~~ 289 (402)
.+..|.....++ .+ ++.-+-.+++++-.
T Consensus 939 ~l~~La~~~~~~--~~-i~~tvk~tlseFkr 966 (997)
T 1vsy_5 939 NLSNLSSWARTS--GM-TGNAAKNTISEFKK 966 (997)
T ss_dssp HHHHHHTTSSSC--SS-HHHHTHHHHHHHHH
T ss_pred HHHHHHHHhCCC--Cc-hHHHHHHHHHHHHh
Confidence 222333333332 22 55556666666643
No 162
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=26.26 E-value=1.9e+02 Score=30.69 Aligned_cols=139 Identities=12% Similarity=0.035 Sum_probs=89.6
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHH--HHcCcHHHHHHhhc--------CCC--HHHHHHHHHHHHHHh
Q 015709 177 SVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQV--LELGALSKLMKMVK--------SSF--VEEAVKALYTVSSLI 244 (402)
Q Consensus 177 ~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNNp~~Q~~~--le~g~L~~Ll~LL~--------s~~--~~vr~kAl~ALS~Li 244 (402)
..|+.-|-++.=++|--||-.|..+.......-... ......-+|+-++. ++. .+||..|..+|+.+
T Consensus 177 E~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL- 255 (800)
T 3oc3_A 177 EQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI- 255 (800)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-
T ss_pred HHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH-
Confidence 456666677888899999998888765432110000 00033444444443 122 47899999999999
Q ss_pred cCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCChHHH
Q 015709 245 RNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQ 324 (402)
Q Consensus 245 R~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~ 324 (402)
++-++. ...+..|+..+..+ .=.+|.-++-.|.++ ..-+ . . =.++++.++..|...|.||+
T Consensus 256 ~hLp~e------~~IL~qLV~~l~~~--~WEVRHGGLLGLKYL-~DLL---~-----~--Ld~Vv~aVL~GL~D~DDDVR 316 (800)
T 3oc3_A 256 YPLIGP------NDIIEQLVGFLDSG--DWQVQFSGLIALGYL-KEFV---E-----D--KDGLCRKLVSLLSSPDEDIK 316 (800)
T ss_dssp TTTSCS------CCHHHHHTTGGGCS--CHHHHHHHHHHHHHT-GGGC---C-----C--HHHHHHHHHHHTTCSSHHHH
T ss_pred HhCChh------HHHHHHHHhhcCCC--CeeehhhhHHHHHHH-HHHH---H-----H--HHHHHHHHHhhcCCcccHHH
Confidence 776553 34555555444443 456788888888887 2111 1 1 24678888889999999999
Q ss_pred HHHHHHHHHHh
Q 015709 325 EKALAAIKNLL 335 (402)
Q Consensus 325 E~aL~aL~~L~ 335 (402)
..|+.+|.-++
T Consensus 317 AVAAetLiPIA 327 (800)
T 3oc3_A 317 LLSAELLCHFP 327 (800)
T ss_dssp HHHHHHHTTSC
T ss_pred HHHHHHhhhhc
Confidence 99998888777
No 163
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=25.38 E-value=93 Score=26.31 Aligned_cols=92 Identities=13% Similarity=0.132 Sum_probs=55.0
Q ss_pred HHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCC-cHHHHHH
Q 015709 236 ALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRF-FLKSVVD 314 (402)
Q Consensus 236 Al~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g-~v~~Lv~ 314 (402)
.+--|+.++++++.. .| .-.+++|..-|.++ +..++.||+.+|.+|+.+ ..+.+...+.++- .|+.+.+
T Consensus 31 lm~EIA~~T~~s~~~--~~--~eim~~L~kRL~~k--~~~vk~KaL~lL~yL~~~----Gs~~f~~~~r~~~~~Ik~l~~ 100 (140)
T 1vdy_A 31 KLEEICDLLRSSHVS--IV--KEFSEFILKRLDNK--SPIVKQKALRLIKYAVGK----SGSEFRREMQRNSVAVRNLFH 100 (140)
T ss_dssp HHHHHHHHHHHSCHH--HH--HHHHHHHHHHHTSS--SHHHHHHHHHHHHHHTTT----SCHHHHHHHHHTTHHHHTTTT
T ss_pred HHHHHHHHHHhcchh--HH--HHHHHHHHHHhcCC--CcceeehHHHHHHHHHHh----CCHHHHHHHHHhHHHHHHHHh
Confidence 344567777765321 11 12456677778776 466899999999999964 3455555555442 2222222
Q ss_pred hhcCCC--------hHHHHHHHHHHHHHhcC
Q 015709 315 LTASAD--------LDLQEKALAAIKNLLQL 337 (402)
Q Consensus 315 lL~~~d--------~dv~E~aL~aL~~L~~~ 337 (402)
.=..+| ..||++|-.++..|...
T Consensus 101 F~g~~dp~~G~d~g~~VR~~AkEl~~ll~d~ 131 (140)
T 1vdy_A 101 YKGHPDPLKGDALNKAVRETAHETISAIFSE 131 (140)
T ss_dssp CCCCCCTTTSSCHHHHHHHHHHHHHHHHTCC
T ss_pred cCCCCCcccccchhHHHHHHHHHHHHHHhCc
Confidence 211222 56888888877777655
No 164
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=25.23 E-value=90 Score=26.62 Aligned_cols=92 Identities=18% Similarity=0.237 Sum_probs=57.8
Q ss_pred HHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHH-HHH
Q 015709 236 ALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKS-VVD 314 (402)
Q Consensus 236 Al~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~-Lv~ 314 (402)
.+-.|+-+++..+.+.. .++..|..-|++. .+++++..|+.++-.++.+ ....+...+.+..++.. |+.
T Consensus 36 ~ileicD~In~~~~~pk-----eA~ral~KRl~~~-~n~~~~l~AL~LLe~cvkN----CG~~fh~eiask~Fl~e~L~k 105 (152)
T 3rru_A 36 QFMHICDIINTTQDGPK-----DAVKALKKRISKN-YNHKEIQLTLSLIDMCVQN----CGPSFQSLIVKKEFVKENLVK 105 (152)
T ss_dssp HHHHHHHHHHHSTTHHH-----HHHHHHHHHHTTC-CBHHHHHHHHHHHHHHHHH----SCHHHHHHHSSHHHHTTTTGG
T ss_pred HHHHHHHHHhCCCccHH-----HHHHHHHHHHcCC-CChHHHHHHHHHHHHHHHh----cCHHHHHHHHhhHhHHHHHHH
Confidence 44556666665543222 2455666666642 3677888898888887753 44444555555566653 666
Q ss_pred hhcC---CChHHHHHHHHHHHHHhcC
Q 015709 315 LTAS---ADLDLQEKALAAIKNLLQL 337 (402)
Q Consensus 315 lL~~---~d~dv~E~aL~aL~~L~~~ 337 (402)
++.. .+..|+++++..+...+..
T Consensus 106 l~~~~~~~~~~Vk~kil~li~~Wa~~ 131 (152)
T 3rru_A 106 LLNPRYNLPLDIQNRILNFIKTWSQG 131 (152)
T ss_dssp GGSGGGCCCHHHHHHHHHHHHHHHTC
T ss_pred HhcCCCCCcHHHHHHHHHHHHHHHHH
Confidence 6653 2457999999998888753
No 165
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=25.04 E-value=5e+02 Score=25.46 Aligned_cols=113 Identities=12% Similarity=0.118 Sum_probs=71.3
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhccc---
Q 015709 216 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQL--- 292 (402)
Q Consensus 216 g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klq~kA~~lL~~L~~~~l--- 292 (402)
+.++.++.+..+.+.++|...+.-|.-.+....... ...++.|..+|.+. ++.+.++++.+.+++....+
T Consensus 63 ~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~-----~~~l~~L~~LL~d~--d~~V~K~~I~~~tslYpl~f~~i 135 (386)
T 3o2t_A 63 NFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELL-----LKLIANLNMLLRDE--NVNVVKKAILTMTQLYKVALQWM 135 (386)
T ss_dssp GGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999988888898877777776665443322 23556777788764 56678888777666642111
Q ss_pred -ccCCCC--cchhHHh-CCcHHHHHHhhcCCChHHHHHHHHHHHHHh
Q 015709 293 -ENMHKV--EPPLFRD-RFFLKSVVDLTASADLDLQEKALAAIKNLL 335 (402)
Q Consensus 293 -~~~~~~--~~~~l~~-~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~ 335 (402)
.+.+.. ....... ..+-..++.+..+++..++-.++..+..+.
T Consensus 136 ~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VI 182 (386)
T 3o2t_A 136 VKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLI 182 (386)
T ss_dssp HHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred hcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 011110 0111111 123345667778889999999998888765
No 166
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=24.86 E-value=4.9e+02 Score=25.31 Aligned_cols=133 Identities=10% Similarity=0.053 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHH-hhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCc-HHHHHHhh-
Q 015709 191 RKISAWILGKASQNNPLVQKQVLELGALSKLMK-MVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG-DLMLQDIL- 267 (402)
Q Consensus 191 r~~Aa~vLg~~aqNNp~~Q~~~le~g~L~~Ll~-LL~s~~~~vr~kAl~ALS~LiR~~~~~~~~f~~~gG-i~~L~~lL- 267 (402)
|..+.-++.-++-+.+.. +.+..++. .+.+.++..+.-++..++|+..+...+.+.+ .... ...+...+
T Consensus 180 ~FP~LDLLRl~v~~~~~~-------~~l~~li~~~~~~~~~~n~MltlR~laNlF~~~~~g~~ll-~~~~~~~~i~~~i~ 251 (362)
T 3l3f_X 180 KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLL-ESNQVYKSIFETID 251 (362)
T ss_dssp CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHH-TSHHHHTTHHHHSC
T ss_pred cchHHHHHHHHhcCCChH-------HHHHHHHHHhcCCCChhHHHHHHHHHHHhccCcchHHHHH-hcchhHHHHHHHHH
Confidence 777888888888765432 22333332 2334456778899999999987643234433 2211 22233322
Q ss_pred ---cCCC--ccHHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhc---------CCChHHHHHHHHHHHH
Q 015709 268 ---GNSS--FEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA---------SADLDLQEKALAAIKN 333 (402)
Q Consensus 268 ---~s~~--~d~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~---------~~d~dv~E~aL~aL~~ 333 (402)
.+.. .+..++.-+++++.|++..... .... ...+..+++++. ..|.+..-.+|.||++
T Consensus 252 ~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~--~~~~------~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGt 323 (362)
T 3l3f_X 252 TEFSQASAKQSQNLAIAVSTLIFNYSALVTK--GNSD------LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGN 323 (362)
T ss_dssp SCCSSCCHHHHHHHHHHHHHHHHHHHHHHHH--TCSC------TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHH
T ss_pred HHhhhcccCCCchHHHHHHHHHHHHHHHHhc--ccch------HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHH
Confidence 1111 1345788889999999864210 1111 234456666665 2488999999999999
Q ss_pred HhcCCh
Q 015709 334 LLQLRT 339 (402)
Q Consensus 334 L~~~~~ 339 (402)
|+..++
T Consensus 324 L~~~~~ 329 (362)
T 3l3f_X 324 LATVEP 329 (362)
T ss_dssp HHHHCH
T ss_pred HHhcCH
Confidence 996543
No 167
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=22.77 E-value=3.5e+02 Score=22.96 Aligned_cols=70 Identities=11% Similarity=0.130 Sum_probs=43.9
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCC---CCHHHHHHHHHHHHHHhcC
Q 015709 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH---PDTDIRKISAWILGKASQN 204 (402)
Q Consensus 131 ~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s---~~~~Ir~~Aa~vLg~~aqN 204 (402)
..++.++...-+. ...+|+.+..=|..|...+=+..+|.+ |+..++..+.. +-|.+-..-+..++.++..
T Consensus 44 ~~V~~~I~~aldr--k~~ere~~s~LL~~L~~~~ls~~~i~~--Gf~~lle~ldDl~iDiP~a~~~la~fiarav~d 116 (165)
T 2rg8_A 44 GVPVLAVSLALEG--KASHREMTSKLLSDLCGTVMSTTDVEK--SFDKLLKDLPELALDTPRAPQLVGQFIARAVGD 116 (165)
T ss_dssp HHHHHHHHHHHTS--CHHHHHHHHHHHHHHBTTTBCHHHHHH--HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHCCCCHHHHHH--HHHHHHHhChhhcccccchHHHHHHHHHHHHHc
Confidence 4445555433332 345666666666667665556666665 88888877754 5677777777777777654
No 168
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=22.59 E-value=6.2e+02 Score=27.96 Aligned_cols=188 Identities=10% Similarity=0.032 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcC----CCCHHHHHHHHHHHH-----
Q 015709 129 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLN----HPDTDIRKISAWILG----- 199 (402)
Q Consensus 129 d~~lMk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~----s~~~~Ir~~Aa~vLg----- 199 (402)
|..+|+.+++.-.+. =.+.+..|=..|...+.....+..++ +|.+++.|+ ..+.+--.-|+.+|.
T Consensus 131 ~~~ll~dL~~Ls~S~--Y~~VR~~AQ~~L~~~~~~~~gs~~~i----ip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~ 204 (997)
T 1vsy_5 131 ENLLLVDIIQLATSL--YPDIYKPAQGTLVHCMKQLVGSYGVV----INKIIPSLEKAIKDHDYMKIQVILNVLLIKKIH 204 (997)
T ss_dssp HHHHHHHHHHHHTSS--CHHHHHHHHHHHHHHHTTBTTHHHHH----HHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHH
T ss_pred HHHHHHHHHHHhcCc--hHHHHHHHHHHHHHHHHhcccHHHHH----HHHHHHHHhccccCCCHHHHHHHHHHHhhhhhh
Confidence 556777777743332 34778888788888777776666554 677777773 334444456666543
Q ss_pred HHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh------------------------cHHHHH
Q 015709 200 KASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA------------------------GQEMFY 255 (402)
Q Consensus 200 ~~aqNNp~~Q~~~le~g~L~~Ll~LL~s~~~~vr~kAl~ALS~LiR~~~~------------------------~~~~f~ 255 (402)
..+.+|...-.. .++.|++....++++++.-+-.+...++.+... +.+.+.
T Consensus 205 ~~~~~d~~~~~~-----~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~ 279 (997)
T 1vsy_5 205 RKLMTDYKDIGR-----LIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVK 279 (997)
T ss_dssp HHGGGCHHHHHH-----HHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHH
T ss_pred hHHhcChHHHHH-----HHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHH
Confidence 455555544433 467777777777666543222222233222111 011111
Q ss_pred hc-------------CcHHHHHHhhcCCCcc--HHHHHHHHHHHHHHhhcccccCCCCcchhHHhCCcHHHHHHhhcCCC
Q 015709 256 VE-------------AGDLMLQDILGNSSFE--IRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASAD 320 (402)
Q Consensus 256 ~~-------------gGi~~L~~lL~s~~~d--~klq~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d 320 (402)
.. +-...|+.++++. .. =|....++.++.+|... .+ ......+++.+++.+.+++
T Consensus 280 ~~~~~~r~~~~~~~~~L~~~l~~~~~~~-~h~~Wk~~~~~~~~l~~l~~r----~d-----~~~~~~~v~~~~~~l~~dh 349 (997)
T 1vsy_5 280 LAKKKKREYYLSLLVDLQDKLLDKLDNE-KDMGWKIRMFILRFVTQIQSN----LE-----SKPDKRAVFSIISQISTKH 349 (997)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHHHSS-TTCCSCHHHHHHHHHHHHTCC----SS-----CCCCHHHHHHHHGGGGGCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccC-CChhHHHHHHHHHHHHHHHhc----CC-----CCCCHHHHHHHHHhhcCCC
Confidence 00 1112222333221 23 34555555555555421 01 1113346777888899999
Q ss_pred hHHHHHHHHHHHHHhcC
Q 015709 321 LDLQEKALAAIKNLLQL 337 (402)
Q Consensus 321 ~dv~E~aL~aL~~L~~~ 337 (402)
+.+++.|+.++..++..
T Consensus 350 p~~R~~a~~~l~~il~~ 366 (997)
T 1vsy_5 350 PEIIHLVVKSLLSTCNK 366 (997)
T ss_dssp HHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999887754
No 169
>1et1_A Parathyroid hormone; helical dimer, hormone/growth factor complex; 0.90A {Homo sapiens} SCOP: j.15.1.1 PDB: 1hpy_A 1zwa_A 1hph_A 1zwb_A 1zwd_A 1zwc_A 1zwe_A 1hth_A* 1fvy_A 3c4m_C*
Probab=22.51 E-value=44 Score=21.54 Aligned_cols=13 Identities=8% Similarity=0.246 Sum_probs=10.9
Q ss_pred HhHHHHHHHHHHc
Q 015709 112 KRQMEIKELMEKL 124 (402)
Q Consensus 112 ~r~~~L~ea~~~l 124 (402)
+|+.||++.|+.+
T Consensus 19 ~R~~WLq~~l~~v 31 (34)
T 1et1_A 19 ERVEWLRKKLQDV 31 (34)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 6999999998753
No 170
>1bwx_A Parathyroid hormone; peptide hormone, solution structure; NMR {Homo sapiens} SCOP: j.15.1.1 PDB: 1zwf_A 1zwg_A* 2l1x_A
Probab=22.41 E-value=43 Score=22.19 Aligned_cols=13 Identities=8% Similarity=0.246 Sum_probs=11.3
Q ss_pred HhHHHHHHHHHHc
Q 015709 112 KRQMEIKELMEKL 124 (402)
Q Consensus 112 ~r~~~L~ea~~~l 124 (402)
+|+.||++.|+.+
T Consensus 19 ~R~~WLq~~L~~v 31 (39)
T 1bwx_A 19 ERVEWLRKKLQDV 31 (39)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 5999999999865
No 171
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=22.36 E-value=1.4e+02 Score=21.96 Aligned_cols=19 Identities=26% Similarity=0.294 Sum_probs=15.3
Q ss_pred CCcHHHHHHHHHHhHHhhh
Q 015709 349 CGLDTALERLRQQLQEVML 367 (402)
Q Consensus 349 ~GL~~~L~~L~~~~~~l~~ 367 (402)
..|...|..+|.+|++++.
T Consensus 5 ~DL~~il~eiRaQYE~ia~ 23 (77)
T 3trt_A 5 PDCTAAMRDVRQQYESVAA 23 (77)
T ss_dssp CCCHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHH
Confidence 4577888999999998874
No 172
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=21.44 E-value=3.9e+02 Score=27.26 Aligned_cols=91 Identities=11% Similarity=0.127 Sum_probs=61.2
Q ss_pred HHHHHHHHHHhhcC----CCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC
Q 015709 130 AQLIQIAIDDLNNS----TLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNN 205 (402)
Q Consensus 130 ~~lMk~al~~L~~~----~~t~e~k~~AL~~L~~Lve~iDnA~~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~vLg~~aqNN 205 (402)
..++.....+|.++ ..+++.....++.+-..+. . .++.+.=.+.-++.-|.++++.+...||.+|. .
T Consensus 72 ~~ll~~Ik~iL~~~~~~~~lD~~~Li~Ll~~il~~~~---F-d~VLevysve~i~~aL~S~~~~l~~~~ckVI~-----~ 142 (500)
T 3vld_A 72 KPLLATIKRFLTSNVSYDSLNYDYLLDVVDKLVPMAD---F-DDVLEVYSAEDLVKALRSEIDPLKVAACRVIE-----N 142 (500)
T ss_dssp HHHHHHHHHHHHCSSCCTTCCHHHHHHHHHHHHHHSC---H-HHHHHHSCHHHHHHHHTSSCHHHHHHHHHHHH-----T
T ss_pred HHHHHHHHHHHcCCccccccCHHHHHHHHHHHHhcCC---H-HHHHHhCCHHHHHHHHhcCChHHHHHHHHHhc-----c
Confidence 34555555566333 3466665555555544332 2 33444446788889999999999999999999 2
Q ss_pred hHhHHHHHHcCcHHHHHHhhcCCC
Q 015709 206 PLVQKQVLELGALSKLMKMVKSSF 229 (402)
Q Consensus 206 p~~Q~~~le~g~L~~Ll~LL~s~~ 229 (402)
+.-+..|...+.+..|++++-..+
T Consensus 143 s~pk~lfa~t~iidiLL~lyFd~~ 166 (500)
T 3vld_A 143 SQPKGLFATSNIIDILLDILFDEK 166 (500)
T ss_dssp CSSGGGGTTSSHHHHHHHHHTCTT
T ss_pred cCchhHhccChHHHHHHHHHcCCC
Confidence 334677788899999999887764
No 173
>2ccq_A P97, peptide N-glycanase homolog; glycoprotein; 1.6A {Homo sapiens} SCOP: d.314.1.1 PDB: 2hpl_A 2hpj_A 2cm0_A
Probab=20.96 E-value=88 Score=24.75 Aligned_cols=27 Identities=15% Similarity=0.053 Sum_probs=15.8
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhcC
Q 015709 178 VLVGQLNHPDTDIRKISAWILGKASQN 204 (402)
Q Consensus 178 ~Li~lL~s~~~~Ir~~Aa~vLg~~aqN 204 (402)
..+..|...+.+....|..+|.+++.|
T Consensus 5 ~~l~~L~~n~~~~~~~a~~tL~k~l~N 31 (99)
T 2ccq_A 5 PAVAELCQNTPETFLEASKLLLTYADN 31 (99)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 345555555566666666666666555
Done!