Query 015710
Match_columns 402
No_of_seqs 211 out of 1240
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 08:51:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015710.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015710hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0626 Beta-glucosidase, lact 100.0 3E-116 7E-121 882.4 37.3 388 2-389 74-512 (524)
2 PLN02849 beta-glucosidase 100.0 1E-108 3E-113 849.4 38.6 378 7-392 67-489 (503)
3 PLN02814 beta-glucosidase 100.0 4E-108 9E-113 845.9 38.1 374 7-391 65-488 (504)
4 PLN02998 beta-glucosidase 100.0 5E-108 1E-112 843.8 37.7 369 9-386 72-488 (497)
5 COG2723 BglB Beta-glucosidase/ 100.0 4E-106 9E-111 804.3 33.4 366 1-387 41-454 (460)
6 TIGR01233 lacG 6-phospho-beta- 100.0 9E-105 2E-109 817.0 37.7 358 9-389 43-467 (467)
7 PRK13511 6-phospho-beta-galact 100.0 1E-104 2E-109 818.3 37.9 356 10-388 45-468 (469)
8 PRK09589 celA 6-phospho-beta-g 100.0 4E-104 8E-109 813.5 38.8 360 10-390 58-476 (476)
9 PF00232 Glyco_hydro_1: Glycos 100.0 1E-105 3E-110 825.0 27.5 366 2-388 41-455 (455)
10 PRK09593 arb 6-phospho-beta-gl 100.0 5E-104 1E-108 813.0 38.2 361 10-391 64-478 (478)
11 PRK15014 6-phospho-beta-glucos 100.0 1E-102 3E-107 801.9 38.8 360 10-390 60-477 (477)
12 PRK09852 cryptic 6-phospho-bet 100.0 2E-102 3E-107 799.6 38.9 361 10-391 62-474 (474)
13 TIGR03356 BGL beta-galactosida 100.0 8E-100 2E-104 773.9 35.0 354 2-379 37-427 (427)
14 smart00633 Glyco_10 Glycosyl h 99.7 9.8E-15 2.1E-19 139.7 22.4 249 41-378 2-253 (254)
15 PF02449 Glyco_hydro_42: Beta- 99.3 2.8E-12 6.1E-17 129.4 9.4 108 19-132 10-140 (374)
16 PF00150 Cellulase: Cellulase 99.2 3E-11 6.6E-16 115.8 10.2 109 20-133 22-134 (281)
17 COG3693 XynA Beta-1,4-xylanase 99.0 5E-08 1.1E-12 94.1 19.7 269 40-385 67-343 (345)
18 PRK10150 beta-D-glucuronidase; 99.0 1.3E-07 2.8E-12 101.4 24.8 265 18-384 312-593 (604)
19 PF00331 Glyco_hydro_10: Glyco 99.0 1.1E-07 2.3E-12 94.2 22.0 282 25-381 27-318 (320)
20 PF07745 Glyco_hydro_53: Glyco 99.0 1.9E-07 4.2E-12 92.2 23.2 248 24-346 29-299 (332)
21 PF01229 Glyco_hydro_39: Glyco 98.9 2.3E-08 5E-13 104.4 14.8 288 21-382 41-359 (486)
22 COG1874 LacA Beta-galactosidas 98.6 7.1E-08 1.5E-12 102.7 8.6 119 20-144 31-176 (673)
23 PF02836 Glyco_hydro_2_C: Glyc 98.3 9.7E-06 2.1E-10 79.3 14.0 93 17-130 34-132 (298)
24 COG2730 BglC Endoglucanase [Ca 98.1 1.3E-05 2.8E-10 82.0 9.4 118 15-132 64-193 (407)
25 PF01301 Glyco_hydro_35: Glyco 97.8 0.00011 2.5E-09 72.7 9.8 108 20-130 25-150 (319)
26 COG3867 Arabinogalactan endo-1 97.6 0.028 6E-07 54.3 22.6 272 22-360 65-360 (403)
27 PF14587 Glyco_hydr_30_2: O-Gl 97.6 0.0025 5.4E-08 64.0 15.6 102 29-132 57-185 (384)
28 PLN03059 beta-galactosidase; P 97.5 0.0011 2.3E-08 72.5 13.4 108 19-130 59-187 (840)
29 PRK10340 ebgA cryptic beta-D-g 97.3 0.028 6.1E-07 64.0 22.2 90 17-130 353-450 (1021)
30 PLN00197 beta-amylase; Provisi 96.9 0.011 2.4E-07 61.4 12.0 108 18-132 126-272 (573)
31 PLN02803 beta-amylase 96.6 0.0078 1.7E-07 62.3 8.5 107 19-132 107-252 (548)
32 PLN02161 beta-amylase 96.6 0.012 2.5E-07 60.8 9.4 111 15-132 113-262 (531)
33 PF01373 Glyco_hydro_14: Glyco 96.5 0.007 1.5E-07 61.1 7.5 106 18-131 15-151 (402)
34 PLN02801 beta-amylase 96.4 0.017 3.6E-07 59.7 9.6 100 17-121 35-173 (517)
35 PF13204 DUF4038: Protein of u 96.4 0.027 5.8E-07 55.1 10.4 101 25-130 36-156 (289)
36 PLN02905 beta-amylase 96.3 0.023 5.1E-07 59.8 9.8 101 15-120 282-421 (702)
37 PLN02705 beta-amylase 96.2 0.02 4.2E-07 60.2 8.6 99 17-120 266-403 (681)
38 PF14488 DUF4434: Domain of un 96.0 0.095 2.1E-06 47.0 11.2 104 19-131 20-131 (166)
39 KOG0496 Beta-galactosidase [Ca 95.6 0.098 2.1E-06 55.6 10.7 109 20-131 50-176 (649)
40 PF11790 Glyco_hydro_cc: Glyco 95.4 0.068 1.5E-06 50.7 8.2 69 267-348 149-217 (239)
41 PRK09525 lacZ beta-D-galactosi 94.6 0.16 3.5E-06 58.0 9.9 93 17-130 369-463 (1027)
42 COG3250 LacZ Beta-galactosidas 92.0 1 2.2E-05 50.1 10.5 90 15-131 317-408 (808)
43 PF03198 Glyco_hydro_72: Gluca 91.7 0.81 1.8E-05 45.0 8.3 91 19-130 53-145 (314)
44 COG3664 XynB Beta-xylosidase [ 89.9 0.44 9.6E-06 48.1 4.7 100 27-133 13-117 (428)
45 smart00642 Aamy Alpha-amylase 89.6 1.7 3.8E-05 38.8 7.9 66 15-82 15-91 (166)
46 COG3934 Endo-beta-mannanase [C 87.9 0.27 5.9E-06 50.6 1.7 109 21-132 28-150 (587)
47 PF02638 DUF187: Glycosyl hydr 81.5 54 0.0012 32.3 14.6 101 18-118 18-154 (311)
48 PF14871 GHL6: Hypothetical gl 77.7 11 0.00024 32.3 7.4 88 24-117 5-123 (132)
49 PLN02361 alpha-amylase 74.9 8.6 0.00019 39.4 6.9 66 16-81 26-96 (401)
50 cd06592 GH31_glucosidase_KIAA1 72.1 25 0.00055 34.4 9.3 104 22-131 33-167 (303)
51 COG5309 Exo-beta-1,3-glucanase 71.8 27 0.00058 33.8 8.8 55 10-82 54-108 (305)
52 PF00332 Glyco_hydro_17: Glyco 71.8 3.3 7.2E-05 40.9 3.0 71 282-364 225-302 (310)
53 KOG2233 Alpha-N-acetylglucosam 71.4 44 0.00096 35.0 10.8 114 18-131 77-249 (666)
54 PF07488 Glyco_hydro_67M: Glyc 70.4 34 0.00073 33.7 9.3 87 18-119 56-150 (328)
55 PF00128 Alpha-amylase: Alpha 66.5 12 0.00026 35.5 5.7 59 21-82 6-73 (316)
56 PF05089 NAGLU: Alpha-N-acetyl 66.3 61 0.0013 32.4 10.4 112 18-131 18-185 (333)
57 PLN00196 alpha-amylase; Provis 66.2 13 0.00029 38.4 6.1 65 17-81 42-112 (428)
58 cd07945 DRE_TIM_CMS Leptospira 65.5 18 0.00039 35.1 6.6 86 21-119 76-161 (280)
59 cd06543 GH18_PF-ChiA-like PF-C 64.7 33 0.00071 33.6 8.3 84 26-118 19-104 (294)
60 PRK05799 coproporphyrinogen II 62.9 20 0.00044 36.1 6.7 97 21-134 98-196 (374)
61 PF12876 Cellulase-like: Sugar 61.5 4.9 0.00011 31.7 1.5 19 113-131 1-22 (88)
62 PRK12313 glycogen branching en 61.1 44 0.00095 36.4 9.2 93 18-118 169-302 (633)
63 PLN02746 hydroxymethylglutaryl 60.5 27 0.00058 35.1 6.9 87 21-118 123-210 (347)
64 PLN02784 alpha-amylase 59.0 26 0.00057 39.3 7.0 66 16-81 518-588 (894)
65 PF02065 Melibiase: Melibiase; 58.1 2.2E+02 0.0049 29.1 13.7 131 24-188 63-227 (394)
66 PRK05402 glycogen branching en 57.8 61 0.0013 35.9 9.8 100 18-118 264-397 (726)
67 cd06593 GH31_xylosidase_YicI Y 57.6 70 0.0015 31.2 9.3 107 20-131 25-161 (308)
68 PF03659 Glyco_hydro_71: Glyco 56.5 46 0.00099 34.0 7.9 51 19-81 17-67 (386)
69 TIGR02090 LEU1_arch isopropylm 56.1 31 0.00067 34.8 6.6 61 21-82 73-133 (363)
70 PRK09441 cytoplasmic alpha-amy 54.8 24 0.00052 36.9 5.8 67 16-82 19-102 (479)
71 PRK05692 hydroxymethylglutaryl 54.6 41 0.0009 32.8 7.0 87 21-118 81-168 (287)
72 TIGR03581 EF_0839 conserved hy 54.6 43 0.00093 31.4 6.6 78 15-106 131-230 (236)
73 cd03174 DRE_TIM_metallolyase D 54.4 39 0.00083 31.8 6.7 83 22-118 77-159 (265)
74 cd06598 GH31_transferase_CtsZ 54.3 92 0.002 30.7 9.5 110 21-133 26-168 (317)
75 PRK14706 glycogen branching en 53.5 52 0.0011 35.9 8.2 90 26-118 175-299 (639)
76 TIGR01210 conserved hypothetic 53.2 69 0.0015 31.6 8.4 108 22-145 117-229 (313)
77 TIGR02402 trehalose_TreZ malto 53.0 25 0.00054 37.5 5.6 59 18-82 110-181 (542)
78 cd07939 DRE_TIM_NifV Streptomy 52.9 19 0.00042 34.3 4.3 81 22-118 72-152 (259)
79 PRK14041 oxaloacetate decarbox 52.7 48 0.001 34.7 7.5 55 18-87 89-148 (467)
80 cd07938 DRE_TIM_HMGL 3-hydroxy 52.1 49 0.0011 32.0 7.1 86 22-118 76-162 (274)
81 TIGR02403 trehalose_treC alpha 51.8 30 0.00064 37.0 5.9 67 16-82 24-96 (543)
82 COG1501 Alpha-glucosidases, fa 51.2 1.5E+02 0.0033 33.1 11.4 101 31-136 294-422 (772)
83 PRK12581 oxaloacetate decarbox 50.9 47 0.001 34.8 7.0 55 18-87 99-158 (468)
84 PRK14040 oxaloacetate decarbox 50.7 50 0.0011 35.7 7.4 50 18-82 91-145 (593)
85 cd07948 DRE_TIM_HCS Saccharomy 50.0 26 0.00057 33.6 4.8 60 22-82 74-133 (262)
86 PLN02447 1,4-alpha-glucan-bran 50.0 39 0.00085 37.6 6.6 102 17-118 248-383 (758)
87 TIGR00433 bioB biotin syntheta 49.4 31 0.00067 33.3 5.2 54 22-81 123-178 (296)
88 PRK04161 tagatose 1,6-diphosph 49.3 84 0.0018 31.3 8.1 59 24-87 112-170 (329)
89 TIGR02630 xylose_isom_A xylose 48.4 3.1E+02 0.0068 28.4 12.2 86 25-120 84-180 (434)
90 PRK12858 tagatose 1,6-diphosph 48.4 72 0.0016 32.0 7.7 52 25-81 112-163 (340)
91 TIGR02660 nifV_homocitr homoci 48.1 45 0.00098 33.6 6.3 81 22-118 75-155 (365)
92 PRK12399 tagatose 1,6-diphosph 47.9 90 0.002 31.0 8.0 58 25-87 111-168 (324)
93 TIGR03234 OH-pyruv-isom hydrox 47.4 66 0.0014 30.1 7.1 68 17-87 82-150 (254)
94 PF12891 Glyco_hydro_44: Glyco 46.9 52 0.0011 31.3 6.0 74 61-134 24-139 (239)
95 PRK05474 xylose isomerase; Pro 45.7 3.5E+02 0.0075 28.1 12.1 87 24-120 84-181 (437)
96 cd06601 GH31_lyase_GLase GLase 45.6 1.1E+02 0.0023 30.6 8.4 106 25-136 30-140 (332)
97 PRK09058 coproporphyrinogen II 45.1 77 0.0017 32.9 7.6 106 21-144 162-270 (449)
98 TIGR00539 hemN_rel putative ox 45.1 67 0.0015 32.1 7.0 92 21-131 99-194 (360)
99 PRK10933 trehalose-6-phosphate 44.5 55 0.0012 35.0 6.6 63 16-82 30-102 (551)
100 PRK11858 aksA trans-homoaconit 43.8 60 0.0013 32.9 6.5 59 22-81 78-136 (378)
101 PRK09505 malS alpha-amylase; R 43.8 38 0.00082 37.3 5.3 62 21-82 232-313 (683)
102 PRK03705 glycogen debranching 43.0 53 0.0012 36.0 6.3 57 25-82 185-263 (658)
103 cd06591 GH31_xylosidase_XylS X 42.9 1.9E+02 0.004 28.5 9.7 113 21-134 26-164 (319)
104 cd07937 DRE_TIM_PC_TC_5S Pyruv 42.9 1.4E+02 0.003 28.8 8.6 70 21-118 93-162 (275)
105 cd06545 GH18_3CO4_chitinase Th 42.3 74 0.0016 30.0 6.5 74 38-118 26-99 (253)
106 PRK12331 oxaloacetate decarbox 42.1 1E+02 0.0023 32.1 8.0 51 22-87 99-149 (448)
107 TIGR01515 branching_enzym alph 42.1 49 0.0011 35.9 5.8 99 18-118 155-288 (613)
108 cd06565 GH20_GcnA-like Glycosy 41.8 98 0.0021 30.3 7.4 64 21-91 19-87 (301)
109 cd02742 GH20_hexosaminidase Be 41.4 77 0.0017 31.0 6.7 65 21-91 18-99 (303)
110 cd06603 GH31_GANC_GANAB_alpha 41.4 1.1E+02 0.0023 30.5 7.8 110 21-134 26-167 (339)
111 cd06542 GH18_EndoS-like Endo-b 41.3 89 0.0019 29.4 6.9 55 60-118 50-104 (255)
112 cd06602 GH31_MGAM_SI_GAA This 41.2 1.6E+02 0.0035 29.3 9.0 107 21-132 26-168 (339)
113 PF00150 Cellulase: Cellulase 41.0 85 0.0018 29.4 6.8 56 63-121 23-78 (281)
114 PRK14705 glycogen branching en 40.9 1.9E+02 0.0041 34.2 10.4 93 25-118 772-897 (1224)
115 COG1523 PulA Type II secretory 40.9 66 0.0014 35.4 6.5 57 25-81 206-285 (697)
116 PRK07379 coproporphyrinogen II 40.5 1.3E+02 0.0029 30.6 8.4 104 21-143 114-221 (400)
117 TIGR02456 treS_nterm trehalose 40.2 85 0.0018 33.4 7.2 64 18-81 27-96 (539)
118 PRK14511 maltooligosyl trehalo 40.2 55 0.0012 37.0 5.9 56 18-81 19-89 (879)
119 PRK10785 maltodextrin glucosid 39.7 48 0.001 35.8 5.3 59 22-82 182-247 (598)
120 PF10566 Glyco_hydro_97: Glyco 39.6 1.6E+02 0.0034 28.6 8.3 102 14-116 27-149 (273)
121 TIGR03217 4OH_2_O_val_ald 4-hy 39.6 2.5E+02 0.0054 28.0 10.0 46 22-82 90-135 (333)
122 COG0821 gcpE 1-hydroxy-2-methy 38.8 2.3E+02 0.0049 28.5 9.2 84 14-113 79-162 (361)
123 cd02874 GH18_CFLE_spore_hydrol 38.6 1.2E+02 0.0027 29.4 7.7 92 17-118 7-103 (313)
124 cd07941 DRE_TIM_LeuA3 Desulfob 38.3 95 0.0021 29.9 6.6 81 23-115 82-162 (273)
125 PF02055 Glyco_hydro_30: O-Gly 37.8 2.1E+02 0.0045 30.3 9.5 99 274-384 319-421 (496)
126 TIGR02401 trehalose_TreY malto 37.4 64 0.0014 36.3 5.8 64 18-81 15-85 (825)
127 PRK09936 hypothetical protein; 36.9 3.9E+02 0.0085 26.2 10.4 62 21-92 40-101 (296)
128 PF01055 Glyco_hydro_31: Glyco 36.5 1.5E+02 0.0032 30.4 8.2 109 20-133 44-184 (441)
129 cd06604 GH31_glucosidase_II_Ma 36.5 2.5E+02 0.0054 27.8 9.5 108 20-134 25-164 (339)
130 PF03511 Fanconi_A: Fanconi an 36.4 26 0.00057 26.0 1.8 39 43-85 19-57 (64)
131 TIGR01232 lacD tagatose 1,6-di 36.1 1.4E+02 0.0031 29.6 7.4 60 24-88 111-170 (325)
132 COG2951 MltB Membrane-bound ly 35.5 45 0.00097 33.5 3.9 94 270-373 111-222 (343)
133 PF04914 DltD_C: DltD C-termin 35.3 1.1E+02 0.0024 26.2 5.9 56 61-120 36-91 (130)
134 TIGR01108 oadA oxaloacetate de 35.3 1.5E+02 0.0032 32.1 8.1 92 22-132 94-205 (582)
135 COG3589 Uncharacterized conser 35.0 82 0.0018 31.5 5.5 69 25-109 22-90 (360)
136 cd06600 GH31_MGAM-like This fa 33.9 2.9E+02 0.0064 27.1 9.5 107 21-132 26-163 (317)
137 TIGR01212 radical SAM protein, 33.9 1.3E+02 0.0028 29.4 6.9 73 60-145 162-234 (302)
138 PRK12568 glycogen branching en 33.8 98 0.0021 34.4 6.5 100 18-118 268-401 (730)
139 PF09585 Lin0512_fam: Conserve 33.7 36 0.00078 28.5 2.5 31 287-330 2-32 (113)
140 TIGR02100 glgX_debranch glycog 33.7 97 0.0021 34.2 6.5 58 25-82 190-266 (688)
141 TIGR00612 ispG_gcpE 1-hydroxy- 33.6 2.6E+02 0.0057 28.0 8.8 88 10-113 73-160 (346)
142 PRK12677 xylose isomerase; Pro 33.6 3.9E+02 0.0085 27.2 10.5 91 20-119 32-128 (384)
143 TIGR03471 HpnJ hopanoid biosyn 33.5 1.2E+02 0.0025 31.7 6.8 76 22-112 287-364 (472)
144 PLN02960 alpha-amylase 33.1 85 0.0018 35.5 5.9 102 16-118 413-549 (897)
145 cd06599 GH31_glycosidase_Aec37 32.9 3.6E+02 0.0077 26.5 9.9 110 21-132 31-171 (317)
146 PRK14510 putative bifunctional 32.7 71 0.0015 37.7 5.5 59 23-81 191-267 (1221)
147 COG5520 O-Glycosyl hydrolase [ 32.4 1.3E+02 0.0027 30.5 6.3 112 61-174 153-295 (433)
148 TIGR01211 ELP3 histone acetylt 32.4 1.7E+02 0.0037 31.2 7.8 107 22-146 206-317 (522)
149 PRK08599 coproporphyrinogen II 32.3 1.8E+02 0.004 29.2 7.9 96 21-135 99-198 (377)
150 cd07944 DRE_TIM_HOA_like 4-hyd 31.8 97 0.0021 29.7 5.5 67 22-118 85-151 (266)
151 TIGR02058 lin0512_fam conserve 31.7 38 0.00082 28.5 2.3 31 287-330 2-32 (116)
152 PF04646 DUF604: Protein of un 31.3 24 0.00052 33.7 1.2 72 69-143 76-147 (255)
153 cd06589 GH31 The enzymes of gl 31.2 2.1E+02 0.0045 27.2 7.7 90 21-133 26-120 (265)
154 TIGR01589 A_thal_3526 uncharac 30.9 57 0.0012 23.9 2.8 36 64-110 19-55 (57)
155 TIGR00419 tim triosephosphate 30.5 1.1E+02 0.0025 28.2 5.5 44 25-81 74-117 (205)
156 PRK09856 fructoselysine 3-epim 30.4 83 0.0018 29.7 4.8 61 17-80 88-148 (275)
157 PTZ00445 p36-lilke protein; Pr 30.2 96 0.0021 29.1 4.9 55 25-82 35-99 (219)
158 PF09713 A_thal_3526: Plant pr 29.9 42 0.0009 24.3 1.9 36 64-110 16-52 (54)
159 cd06568 GH20_SpHex_like A subg 29.8 1.9E+02 0.004 28.8 7.3 65 21-91 20-102 (329)
160 cd00311 TIM Triosephosphate is 29.7 1.4E+02 0.003 28.4 6.1 48 25-81 77-124 (242)
161 cd07947 DRE_TIM_Re_CS Clostrid 29.6 1.8E+02 0.004 28.2 7.0 60 21-81 76-135 (279)
162 cd06525 GH25_Lyc-like Lyc mura 29.4 3.4E+02 0.0073 24.2 8.4 51 23-87 12-62 (184)
163 PRK14507 putative bifunctional 29.3 1.3E+02 0.0029 36.6 7.0 56 18-81 757-827 (1693)
164 PF01261 AP_endonuc_2: Xylose 29.1 1.5E+02 0.0033 26.1 6.1 64 17-81 69-132 (213)
165 cd06570 GH20_chitobiase-like_1 29.1 2.1E+02 0.0045 28.2 7.4 64 21-90 20-94 (311)
166 TIGR02635 RhaI_grampos L-rhamn 28.7 4.4E+02 0.0095 26.9 9.8 90 11-120 33-131 (378)
167 TIGR02104 pulA_typeI pullulana 28.6 1.4E+02 0.0029 32.4 6.6 23 60-82 228-250 (605)
168 smart00729 Elp3 Elongator prot 28.2 3.2E+02 0.0069 23.7 8.1 57 21-81 99-157 (216)
169 cd07940 DRE_TIM_IPMS 2-isoprop 27.6 1.7E+02 0.0037 27.9 6.4 81 22-118 72-156 (268)
170 PRK10426 alpha-glucosidase; Pr 27.3 5.1E+02 0.011 28.3 10.6 109 20-130 222-364 (635)
171 PRK00366 ispG 4-hydroxy-3-meth 27.3 3.8E+02 0.0083 27.1 8.8 73 28-113 97-169 (360)
172 PTZ00445 p36-lilke protein; Pr 27.3 1E+02 0.0022 28.9 4.5 51 61-115 29-89 (219)
173 cd02803 OYE_like_FMN_family Ol 26.7 5.5E+02 0.012 24.9 10.1 32 53-84 69-100 (327)
174 PF11997 DUF3492: Domain of un 26.7 62 0.0014 31.2 3.2 26 270-298 185-210 (268)
175 TIGR00542 hxl6Piso_put hexulos 26.3 1.2E+02 0.0027 28.7 5.2 62 17-81 92-153 (279)
176 PRK00042 tpiA triosephosphate 26.2 1.4E+02 0.0029 28.6 5.4 48 25-81 79-126 (250)
177 KOG1065 Maltase glucoamylase a 26.1 3.2E+02 0.0068 30.7 8.6 103 25-135 317-454 (805)
178 PRK13398 3-deoxy-7-phosphohept 26.0 2.6E+02 0.0057 26.9 7.4 73 14-91 36-108 (266)
179 PRK00230 orotidine 5'-phosphat 25.7 88 0.0019 29.3 4.0 61 13-88 7-67 (230)
180 COG0366 AmyA Glycosidases [Car 25.7 1.2E+02 0.0025 31.3 5.3 57 23-81 33-97 (505)
181 PRK06294 coproporphyrinogen II 25.7 3.1E+02 0.0067 27.6 8.2 96 21-134 102-200 (370)
182 PF13812 PPR_3: Pentatricopept 25.6 44 0.00096 20.2 1.4 15 63-77 20-34 (34)
183 PRK05628 coproporphyrinogen II 25.1 2.1E+02 0.0045 28.7 6.8 96 21-135 107-206 (375)
184 PRK14567 triosephosphate isome 24.8 1.7E+02 0.0036 28.2 5.7 48 25-81 78-125 (253)
185 TIGR00538 hemN oxygen-independ 24.6 1.2E+02 0.0026 31.5 5.0 61 21-87 150-213 (455)
186 PLN02389 biotin synthase 24.5 2E+02 0.0043 29.3 6.5 57 20-81 176-233 (379)
187 PRK08195 4-hyroxy-2-oxovalerat 24.3 1.6E+02 0.0034 29.5 5.6 68 22-119 91-158 (337)
188 cd07943 DRE_TIM_HOA 4-hydroxy- 24.2 1.6E+02 0.0034 28.0 5.5 67 22-118 88-154 (263)
189 TIGR00542 hxl6Piso_put hexulos 24.1 4.4E+02 0.0096 24.9 8.7 54 19-78 16-69 (279)
190 cd00019 AP2Ec AP endonuclease 24.0 3.8E+02 0.0083 25.3 8.2 55 19-80 10-65 (279)
191 PRK01060 endonuclease IV; Prov 23.9 3.2E+02 0.007 25.8 7.7 50 21-77 14-63 (281)
192 PLN02429 triosephosphate isome 23.5 1.6E+02 0.0035 29.2 5.4 48 25-81 140-187 (315)
193 PRK05660 HemN family oxidoredu 22.7 3.6E+02 0.0079 27.2 8.0 94 21-132 106-202 (378)
194 PRK09282 pyruvate carboxylase 22.6 3.2E+02 0.0069 29.6 7.9 48 21-83 98-145 (592)
195 PF00682 HMGL-like: HMGL-like 22.3 2.3E+02 0.0049 26.2 6.1 77 25-116 73-149 (237)
196 smart00812 Alpha_L_fucos Alpha 22.3 3.3E+02 0.0071 27.7 7.6 53 25-79 87-146 (384)
197 PLN03153 hypothetical protein; 21.9 89 0.0019 33.1 3.4 69 69-146 326-401 (537)
198 PHA02769 hypothetical protein; 21.8 1.4E+02 0.0031 25.0 3.9 34 60-93 98-131 (154)
199 PF06777 DUF1227: Protein of u 21.5 1.6E+02 0.0035 25.8 4.4 67 61-129 16-85 (146)
200 PRK08446 coproporphyrinogen II 21.4 3.4E+02 0.0074 27.0 7.5 91 22-132 98-193 (350)
201 PF10566 Glyco_hydro_97: Glyco 21.3 1.5E+02 0.0032 28.9 4.6 67 22-101 109-175 (273)
202 PRK09997 hydroxypyruvate isome 21.1 3.3E+02 0.0071 25.5 7.0 65 20-87 86-151 (258)
203 PRK13347 coproporphyrinogen II 21.0 1.6E+02 0.0034 30.6 5.1 79 22-113 152-231 (453)
204 PF09314 DUF1972: Domain of un 21.0 1.5E+02 0.0033 27.0 4.4 19 102-120 138-156 (185)
205 PLN02808 alpha-galactosidase 20.8 2.4E+02 0.0052 28.8 6.2 60 16-86 130-189 (386)
206 cd08576 GDPD_like_SMaseD_PLD G 20.8 7.7E+02 0.017 23.8 9.4 110 17-132 5-126 (265)
207 PRK09856 fructoselysine 3-epim 20.8 6.3E+02 0.014 23.6 8.9 52 20-79 14-65 (275)
208 PRK09432 metF 5,10-methylenete 20.3 2.2E+02 0.0048 27.8 5.7 72 61-133 189-283 (296)
209 PF14417 MEDS: MEDS: MEthanoge 20.3 2.3E+02 0.005 25.5 5.5 59 17-86 103-163 (191)
210 PRK14565 triosephosphate isome 20.2 2.2E+02 0.0047 27.0 5.4 48 25-81 78-125 (237)
211 PF14606 Lipase_GDSL_3: GDSL-l 20.2 2.4E+02 0.0052 25.6 5.4 65 61-129 78-146 (178)
212 PRK13210 putative L-xylulose 5 20.0 6.3E+02 0.014 23.6 8.8 84 21-115 18-101 (284)
213 cd06594 GH31_glucosidase_YihQ 20.0 8.3E+02 0.018 23.9 10.5 109 21-131 25-168 (317)
No 1
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.4e-116 Score=882.40 Aligned_cols=388 Identities=59% Similarity=1.111 Sum_probs=368.1
Q ss_pred CccccCCCCCcccchhhhchHHHHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEc
Q 015710 2 AEKILDHSNGDVADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (402)
Q Consensus 2 ~~~~~~~~~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 81 (402)
||++.+++++|+|||+||+|+|||+|||+||+++|||||+||||+|.|...+.+|++||+||+++|++|+++||+|+|||
T Consensus 74 p~~~~~~~ngdva~D~Yh~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTL 153 (524)
T KOG0626|consen 74 PGKICDGSNGDVAVDFYHRYKEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTL 153 (524)
T ss_pred CcccccCCCCCeechhhhhhHHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 67788899999999999999999999999999999999999999999965578999999999999999999999999999
Q ss_pred cCCCCchhhHhhcCCCCChhhHHHHHHHHHHHHHHhCCcceEEEeecCCCcccccccccCccCCCCCCCCCCCCCCCCCC
Q 015710 82 FHWDTPQALEDEYGGFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVGECGYAKGTKAPGRCSNYIGNCPAGNSA 161 (402)
Q Consensus 82 ~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~g~~v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~g~~~ 161 (402)
+|||+|++|+++||||+|+++++.|.+||+.||++|||+||+|+|||||++++..||..|..|||+|+.+..+|+.|+|+
T Consensus 154 fHwDlPq~LeDeYgGwLn~~ivedF~~yA~~CF~~fGDrVK~WiT~NEP~v~s~~gY~~G~~aPGrCs~~~~~c~~g~s~ 233 (524)
T KOG0626|consen 154 FHWDLPQALEDEYGGWLNPEIVEDFRDYADLCFQEFGDRVKHWITFNEPNVFSIGGYDTGTKAPGRCSKYVGNCSAGNSG 233 (524)
T ss_pred ecCCCCHHHHHHhccccCHHHHHHHHHHHHHHHHHhcccceeeEEecccceeeeehhccCCCCCCCCCcccccCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999877799999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcccCCCccEEEEecCCccccCCCCHHHHHHHHHHHhhhccccccccccCCCCHhHH
Q 015710 162 TEPYVAAHHLILSHATAVKLYRQNYQASQNGLIGITVSSIWAVPKFPTVASEKAAYRAIDFKFGWIFNPITYGSYPRSMQ 241 (402)
Q Consensus 162 ~~~~~~~~nll~Aha~A~~~~r~~~~~~~~~~IGi~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~f~dp~~~G~Yp~~~~ 241 (402)
++.|.|.||||+|||+||++||+.++..|+|+|||++...|++|.+++++|++||+|+.+|..+|+++|++.|+||..|+
T Consensus 234 ~epYiv~HNllLAHA~Av~~yr~kyk~~Q~G~IGi~~~~~w~eP~~~s~~D~~Aa~Ra~~F~~gw~l~p~~~GdYP~~Mk 313 (524)
T KOG0626|consen 234 TEPYIVAHNLLLAHAAAVDLYRKKYKKKQGGKIGIALSARWFEPYDDSKEDKEAAERALDFFLGWFLEPLTFGDYPDEMK 313 (524)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHhhhhhcCCeEeEEEeeeeeccCCCChHHHHHHHHHHHhhhhhhhcccccCCcHHHHH
Confidence 99999999999999999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccCCCCCccccc---------------------------------------------------ccCCCCeeechHH
Q 015710 242 HLVGNRLPKFTKSQAE---------------------------------------------------MTGSDWLSIYPKG 270 (402)
Q Consensus 242 ~~l~~~~p~~~~~~~~---------------------------------------------------~~~~~w~~i~P~g 270 (402)
+.+|+|||.||++|++ .+...|+.++|+|
T Consensus 314 ~~vg~rLP~FT~ee~~~lKGS~DFvGiNyYts~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~v~P~G 393 (524)
T KOG0626|consen 314 ERVGSRLPKFTEEESKLLKGSYDFVGINYYTSRYVKHLKPPPDPSQPGWSTDSGVDWTLEGNDLIGPKAGSDWLPVYPWG 393 (524)
T ss_pred HHhcccCCCCCHHHHHHhcCchhhceeehhhhhhhhccCCCCCCCCcccccccceeeeecccccccccccccceeeccHH
Confidence 9999999999998875 0124578899999
Q ss_pred HHHHHHHHHHHcCCCCEEEeecCCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeecccccccc
Q 015710 271 IRELLLYLKKKYNPPPIYITENGVGDVNSSSWPISYALNDTVRVNYYNDHLSYILEAINSGGVDVRGYFAWSFLDNYEWE 350 (402)
Q Consensus 271 l~~~L~~~~~rY~~ppI~ITENG~~~~~~~~~~~~~~i~D~~Ri~yl~~hl~~v~~Ai~~dGv~v~GY~~WSl~Dn~eW~ 350 (402)
|+++|++++++|++|||||||||+++.+....+....++|..|++|++.||++|++||.+|||+|+|||+|||||||||.
T Consensus 394 lr~~L~yiK~~Y~np~iyItENG~~d~~~~~~~~~~~l~D~~Ri~Y~~~~L~~~~kAi~~dgvnv~GYf~WSLmDnfEw~ 473 (524)
T KOG0626|consen 394 LRKLLNYIKDKYGNPPIYITENGFDDLDGGTKSLEVALKDTKRIEYLQNHLQAVLKAIKEDGVNVKGYFVWSLLDNFEWL 473 (524)
T ss_pred HHHHHHHHHhhcCCCcEEEEeCCCCcccccccchhhhhcchHHHHHHHHHHHHHHHHHHhcCCceeeEEEeEcccchhhh
Confidence 99999999999999999999999998765433445677899999999999999999998669999999999999999999
Q ss_pred CCCcCceeeEEEcCCCCccccccchHHHHHHHHHhCCCC
Q 015710 351 YGYTSRFGIIYVDYKDGLRRSLKNSALWFKKFLRNQTDV 389 (402)
Q Consensus 351 ~g~~~rfGL~~VD~~~~~~R~pK~S~~~y~~ii~~~~~~ 389 (402)
.||+.||||++|||+|.++|+||.|+.||+++++.+..+
T Consensus 474 ~Gy~~RFGlyyVDf~d~l~R~pK~Sa~wy~~fl~~~~~~ 512 (524)
T KOG0626|consen 474 DGYKVRFGLYYVDFKDPLKRYPKLSAKWYKKFLKGKVKP 512 (524)
T ss_pred cCcccccccEEEeCCCCCcCCchhHHHHHHHHHcCCCCC
Confidence 999999999999999889999999999999999998876
No 2
>PLN02849 beta-glucosidase
Probab=100.00 E-value=1.3e-108 Score=849.38 Aligned_cols=378 Identities=43% Similarity=0.871 Sum_probs=342.2
Q ss_pred CCCCCcccchhhhchHHHHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCCCC
Q 015710 7 DHSNGDVADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDT 86 (402)
Q Consensus 7 ~~~~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~ 86 (402)
++.++++||||||||+|||+|||+||+++|||||+||||+|+|. |.+|++||+||+++|++|+++||+|+|||+|||+
T Consensus 67 ~~~~~~~a~D~YhrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~--g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~dl 144 (503)
T PLN02849 67 NMSNGDIACDGYHKYKEDVKLMVETGLDAFRFSISWSRLIPNGR--GSVNPKGLQFYKNFIQELVKHGIEPHVTLFHYDH 144 (503)
T ss_pred CCCCCCccccHHHhHHHHHHHHHHcCCCeEEEeccHHhcCcCCC--CCCCHHHHHHHHHHHHHHHHcCCeEEEeecCCCC
Confidence 35688999999999999999999999999999999999999985 8999999999999999999999999999999999
Q ss_pred chhhHhhcCCCCChhhHHHHHHHHHHHHHHhCCcceEEEeecCCCcccccccccCccCCCCCCCCCCCCCCCCCCChHHH
Q 015710 87 PQALEDEYGGFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVGECGYAKGTKAPGRCSNYIGNCPAGNSATEPYV 166 (402)
Q Consensus 87 P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~g~~v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~g~~~~~~~~ 166 (402)
|+||++++|||+|++++++|++||+.|+++|||+|++|+|||||++++..||..|.+|||.+......|+.+++.++.++
T Consensus 145 P~~L~~~yGGW~nr~~v~~F~~YA~~~f~~fgDrVk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~ 224 (503)
T PLN02849 145 PQYLEDDYGGWINRRIIKDFTAYADVCFREFGNHVKFWTTINEANIFTIGGYNDGITPPGRCSSPGRNCSSGNSSTEPYI 224 (503)
T ss_pred cHHHHHhcCCcCCchHHHHHHHHHHHHHHHhcCcCCEEEEecchhhhhhchhhhccCCCCccccccccccccchhHHHHH
Confidence 99999988999999999999999999999999999999999999999999999999999975421124655555567899
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCccEEEEecCCccccCCCCHHHHHHHHHHHhhhccccccccccCCCCHhHHHHhcc
Q 015710 167 AAHHLILSHATAVKLYRQNYQASQNGLIGITVSSIWAVPKFPTVASEKAAYRAIDFKFGWIFNPITYGSYPRSMQHLVGN 246 (402)
Q Consensus 167 ~~~nll~Aha~A~~~~r~~~~~~~~~~IGi~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~f~dp~~~G~Yp~~~~~~l~~ 246 (402)
++||+++||++||+++|+++...|+++||++++..+++|.+++++|++||++.++|.++||+||++.|+||+.|++.++.
T Consensus 225 a~hn~llAHa~A~~~~~~~~~~~~~~~IGi~~~~~~~~P~~~~~~D~~AA~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~ 304 (503)
T PLN02849 225 VGHNLLLAHASVSRLYKQKYKDMQGGSIGFSLFALGFTPSTSSKDDDIATQRAKDFYLGWMLEPLIFGDYPDEMKRTIGS 304 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCEEEEEEECceeecCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhc
Confidence 99999999999999999975434679999999999999999999999999999999999999999999999999988876
Q ss_pred cCCCCCccccc--------------------------------------------ccCCCCeeechHHHHHHHHHHHHHc
Q 015710 247 RLPKFTKSQAE--------------------------------------------MTGSDWLSIYPKGIRELLLYLKKKY 282 (402)
Q Consensus 247 ~~p~~~~~~~~--------------------------------------------~~~~~w~~i~P~gl~~~L~~~~~rY 282 (402)
++|.|+++|++ .+++|| +|+|+||+.+|++++++|
T Consensus 305 ~lp~~~~~d~~~i~~~~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw-~i~P~Gl~~~L~~~~~rY 383 (503)
T PLN02849 305 RLPVFSKEESEQVKGSSDFIGVIHYLAASVTNIKIKPSLSGNPDFYSDMGVSLGKFSAFEY-AVAPWAMESVLEYIKQSY 383 (503)
T ss_pred CCCCCCHHHHHHhcCCCCEEEEeccchhhcccCCCCCCCCCCCccccccCCCCCccCCCCC-eEChHHHHHHHHHHHHhc
Confidence 66655544322 112455 999999999999999999
Q ss_pred CCCCEEEeecCCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeeccccccccCCCcCceeeEEE
Q 015710 283 NPPPIYITENGVGDVNSSSWPISYALNDTVRVNYYNDHLSYILEAINSGGVDVRGYFAWSFLDNYEWEYGYTSRFGIIYV 362 (402)
Q Consensus 283 ~~ppI~ITENG~~~~~~~~~~~~~~i~D~~Ri~yl~~hl~~v~~Ai~~dGv~v~GY~~WSl~Dn~eW~~g~~~rfGL~~V 362 (402)
++|||||||||++..++ .++.++|++||+||++||++|++||++ ||||+||++|||||||||.+||++|||||+|
T Consensus 384 ~~pPi~ITENG~~~~d~----~~~~v~D~~Ri~Yl~~hL~~l~~Ai~d-Gv~V~GY~~WSl~DnfEW~~Gy~~RfGLi~V 458 (503)
T PLN02849 384 GNPPVYILENGTPMKQD----LQLQQKDTPRIEYLHAYIGAVLKAVRN-GSDTRGYFVWSFMDLYELLKGYEFSFGLYSV 458 (503)
T ss_pred CCCCEEEeCCCCCccCC----CCCcccCHHHHHHHHHHHHHHHHHHHc-CCCEEEEeeccchhhhchhccccCccceEEE
Confidence 99889999999998653 356799999999999999999999987 9999999999999999999999999999999
Q ss_pred cCCC-CccccccchHHHHHHHHHhCCCCCCc
Q 015710 363 DYKD-GLRRSLKNSALWFKKFLRNQTDVASN 392 (402)
Q Consensus 363 D~~~-~~~R~pK~S~~~y~~ii~~~~~~~~~ 392 (402)
|++| +++|+||+|++||+++|++++..+++
T Consensus 459 D~~~~~~~R~pK~S~~wy~~ii~~~~~~~~~ 489 (503)
T PLN02849 459 NFSDPHRKRSPKLSAHWYSAFLKGNSTFLGS 489 (503)
T ss_pred CCCCCCcceecccHHHHHHHHHHhCCCCccc
Confidence 9997 47999999999999999999866663
No 3
>PLN02814 beta-glucosidase
Probab=100.00 E-value=3.9e-108 Score=845.89 Aligned_cols=374 Identities=44% Similarity=0.851 Sum_probs=340.4
Q ss_pred CCCCCcccchhhhchHHHHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCCCC
Q 015710 7 DHSNGDVADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDT 86 (402)
Q Consensus 7 ~~~~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~ 86 (402)
+++++++||||||||+|||+|||+||+|+|||||+||||+|+|. |.+|++||+||+++|++|+++||+|+|||+|||+
T Consensus 65 ~~~~~~~a~D~Yhry~EDI~L~k~lG~~ayRfSIsWsRI~P~G~--g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dl 142 (504)
T PLN02814 65 NGGNGDIASDGYHKYKEDVKLMAEMGLESFRFSISWSRLIPNGR--GLINPKGLLFYKNLIKELRSHGIEPHVTLYHYDL 142 (504)
T ss_pred CCCCCCccccHHHhhHHHHHHHHHcCCCEEEEeccHhhcCcCCC--CCCCHHHHHHHHHHHHHHHHcCCceEEEecCCCC
Confidence 45688999999999999999999999999999999999999985 8999999999999999999999999999999999
Q ss_pred chhhHhhcCCCCChhhHHHHHHHHHHHHHHhCCcceEEEeecCCCcccccccccCccCCCCCCCC-CCCCCCCCCCChHH
Q 015710 87 PQALEDEYGGFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVGECGYAKGTKAPGRCSNY-IGNCPAGNSATEPY 165 (402)
Q Consensus 87 P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~g~~v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~-~~~~~~g~~~~~~~ 165 (402)
|+||++++|||+|++++++|++||+.|+++|||+|++|+|||||++++..||..|. +||.++.. ..+|.++++.++.+
T Consensus 143 P~~L~~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk~WiT~NEP~~~~~~gy~~G~-~pg~~~~~~~~~~~~~~~~~~~~ 221 (504)
T PLN02814 143 PQSLEDEYGGWINRKIIEDFTAFADVCFREFGEDVKLWTTINEATIFAIGSYGQGI-RYGHCSPNKFINCSTGNSCTETY 221 (504)
T ss_pred CHHHHHhcCCcCChhHHHHHHHHHHHHHHHhCCcCCEEEeccccchhhhcccccCc-CCCCCCcccccccccCcchHHHH
Confidence 99999988999999999999999999999999999999999999999999999998 48865421 12465455556789
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCccEEEEecCCccccCCCCHHHHHHHHHHHhhhccccccccccCCCCHhHHHHhc
Q 015710 166 VAAHHLILSHATAVKLYRQNYQASQNGLIGITVSSIWAVPKFPTVASEKAAYRAIDFKFGWIFNPITYGSYPRSMQHLVG 245 (402)
Q Consensus 166 ~~~~nll~Aha~A~~~~r~~~~~~~~~~IGi~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~f~dp~~~G~Yp~~~~~~l~ 245 (402)
+++||+++|||+||+++|+.+...|+++||++++..+++|++++++|++||+++++|.++||+||++.|+||+.|++.++
T Consensus 222 ~a~hn~llAHa~Av~~~~~~~~~~~~g~IGi~~~~~~~~P~~~~~~D~~Aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~ 301 (504)
T PLN02814 222 IAGHNMLLAHASASNLYKLKYKSKQRGSIGLSIFAFGLSPYTNSKDDEIATQRAKAFLYGWMLKPLVFGDYPDEMKRTLG 301 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeCceeecCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHh
Confidence 99999999999999999997654577999999999999999999999999999999999999999999999999999887
Q ss_pred ccCCCCCccccc------------------------------------------------ccCCCCeeechHHHHHHHHH
Q 015710 246 NRLPKFTKSQAE------------------------------------------------MTGSDWLSIYPKGIRELLLY 277 (402)
Q Consensus 246 ~~~p~~~~~~~~------------------------------------------------~~~~~w~~i~P~gl~~~L~~ 277 (402)
.++|.|+++|++ .+++|| +|+|+||+.+|++
T Consensus 302 ~~lp~~~~~d~~~ikg~~DFiGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gW-ei~P~Gl~~~L~~ 380 (504)
T PLN02814 302 SRLPVFSEEESEQVKGSSDFVGIIHYTTFYVTNRPAPSIFPSMNEGFFTDMGAYIISAGNSSFFEF-DATPWGLEGILEH 380 (504)
T ss_pred cCCCCCCHHHHHHhcCCCCEEEEcccccceeccCCCCCcccccCCCcccccccccCCCCCcCCCCC-eECcHHHHHHHHH
Confidence 777766555432 112445 9999999999999
Q ss_pred HHHHcCCCCEEEeecCCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeeccccccccCCCcCce
Q 015710 278 LKKKYNPPPIYITENGVGDVNSSSWPISYALNDTVRVNYYNDHLSYILEAINSGGVDVRGYFAWSFLDNYEWEYGYTSRF 357 (402)
Q Consensus 278 ~~~rY~~ppI~ITENG~~~~~~~~~~~~~~i~D~~Ri~yl~~hl~~v~~Ai~~dGv~v~GY~~WSl~Dn~eW~~g~~~rf 357 (402)
++++|++|||||||||++..+ ++.++|++||+||++||++|++||++ ||||+||++|||||||||.+||++||
T Consensus 381 ~~~rY~~ppI~ITENG~~~~~------~g~i~D~~Ri~Yl~~hl~~l~~Ai~d-Gv~V~GY~~WSllDnfEW~~Gy~~Rf 453 (504)
T PLN02814 381 IKQSYNNPPIYILENGMPMKH------DSTLQDTPRVEFIQAYIGAVLNAIKN-GSDTRGYFVWSMIDLYELLGGYTTSF 453 (504)
T ss_pred HHHhcCCCCEEEECCCCCCCC------CCcccCHHHHHHHHHHHHHHHHHHHc-CCCEEEEeeccchhhhchhccccCcc
Confidence 999999988999999999753 46889999999999999999999997 99999999999999999999999999
Q ss_pred eeEEEcCCC-CccccccchHHHHHHHHHhCCCCCC
Q 015710 358 GIIYVDYKD-GLRRSLKNSALWFKKFLRNQTDVAS 391 (402)
Q Consensus 358 GL~~VD~~~-~~~R~pK~S~~~y~~ii~~~~~~~~ 391 (402)
|||+||++| +++|+||+|++||+++|++++.+++
T Consensus 454 GLvyVD~~~~~~~R~pK~S~~wy~~~i~~~~~~~~ 488 (504)
T PLN02814 454 GMYYVNFSDPGRKRSPKLSASWYTGFLNGTIDVAS 488 (504)
T ss_pred ceEEECCCCCCcceeeecHHHHHHHHHhcCCChhc
Confidence 999999997 5799999999999999999988775
No 4
>PLN02998 beta-glucosidase
Probab=100.00 E-value=5e-108 Score=843.83 Aligned_cols=369 Identities=47% Similarity=0.897 Sum_probs=337.8
Q ss_pred CCCcccchhhhchHHHHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCCCCch
Q 015710 9 SNGDVADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQ 88 (402)
Q Consensus 9 ~~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~ 88 (402)
.++++||||||||+|||+|||+||+|+|||||+||||+|+|. |.+|++||+||+++|++|+++||+|+|||+|||+|+
T Consensus 72 ~~~~~a~D~Yhry~EDi~lmk~lG~~~YRfSIsWsRI~P~G~--g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~dlP~ 149 (497)
T PLN02998 72 AAGNVACDQYHKYKEDVKLMADMGLEAYRFSISWSRLLPSGR--GPINPKGLQYYNNLIDELITHGIQPHVTLHHFDLPQ 149 (497)
T ss_pred CCCcccccHHHhhHHHHHHHHHcCCCeEEeeccHHhcCcCCC--CCcCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCH
Confidence 588999999999999999999999999999999999999985 889999999999999999999999999999999999
Q ss_pred hhHhhcCCCCChhhHHHHHHHHHHHHHHhCCcceEEEeecCCCcccccccccCccCCCCCCCC-CCCCCCCCCCChHHHH
Q 015710 89 ALEDEYGGFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVGECGYAKGTKAPGRCSNY-IGNCPAGNSATEPYVA 167 (402)
Q Consensus 89 ~l~~~~gg~~~~~~~~~f~~ya~~~~~~~g~~v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~-~~~~~~g~~~~~~~~~ 167 (402)
||++++|||+|++++++|++||+.|+++|||+|++|+|||||++++..||..|.+|||.++.. ..+|..+++.++.+++
T Consensus 150 ~L~~~yGGW~n~~~v~~F~~YA~~~~~~fgdrVk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~ 229 (497)
T PLN02998 150 ALEDEYGGWLSQEIVRDFTAYADTCFKEFGDRVSHWTTINEVNVFALGGYDQGITPPARCSPPFGLNCTKGNSSIEPYIA 229 (497)
T ss_pred HHHHhhCCcCCchHHHHHHHHHHHHHHHhcCcCCEEEEccCcchhhhcchhhcccCCCccccccccccccccchHHHHHH
Confidence 999988999999999999999999999999999999999999999999999999999965421 1136655555678999
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCccEEEEecCCccccCCCCHHHHHHHHHHHhhhccccccccccCCCCHhHHHHhccc
Q 015710 168 AHHLILSHATAVKLYRQNYQASQNGLIGITVSSIWAVPKFPTVASEKAAYRAIDFKFGWIFNPITYGSYPRSMQHLVGNR 247 (402)
Q Consensus 168 ~~nll~Aha~A~~~~r~~~~~~~~~~IGi~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~f~dp~~~G~Yp~~~~~~l~~~ 247 (402)
+||+++|||+||++||+.++..|+++||++++..+++|.+++++|++||++.++|.++||+||++.|+||+.|++.++.+
T Consensus 230 ~hn~llAHa~A~~~~~~~~~~~~~g~IGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~ 309 (497)
T PLN02998 230 VHNMLLAHASATILYKQQYKYKQHGSVGISVYTYGAVPLTNSVKDKQATARVNDFYIGWILHPLVFGDYPETMKTNVGSR 309 (497)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCCcEEEEEeCCeeecCCCCHHHHHHHHHHHHHHhhhhhhHHhCCCcCHHHHHHHhcC
Confidence 99999999999999999865456799999999999999999999999999999999999999999999999999988877
Q ss_pred CCCCCccccc-------------------c----c-----------------------CCCCeeechHHHHHHHHHHHHH
Q 015710 248 LPKFTKSQAE-------------------M----T-----------------------GSDWLSIYPKGIRELLLYLKKK 281 (402)
Q Consensus 248 ~p~~~~~~~~-------------------~----~-----------------------~~~w~~i~P~gl~~~L~~~~~r 281 (402)
+|.|+++|++ . . ...||+|+|+||+.+|++++++
T Consensus 310 lp~~t~~d~~~i~~~~DFlGiNyYts~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~i~P~Gl~~~L~~~~~r 389 (497)
T PLN02998 310 LPAFTEEESEQVKGAFDFVGVINYMALYVKDNSSSLKPNLQDFNTDIAVEMTLVGNTSIENEYANTPWSLQQILLYVKET 389 (497)
T ss_pred CCCCCHHHHHHhcCCCCEEEEchhcCcccccCCCcCCCCccccccccccccccCCCcCCCCCCEEChHHHHHHHHHHHHH
Confidence 7777766543 0 0 0123599999999999999999
Q ss_pred cCCCCEEEeecCCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeeccccccccCCCcCceeeEE
Q 015710 282 YNPPPIYITENGVGDVNSSSWPISYALNDTVRVNYYNDHLSYILEAINSGGVDVRGYFAWSFLDNYEWEYGYTSRFGIIY 361 (402)
Q Consensus 282 Y~~ppI~ITENG~~~~~~~~~~~~~~i~D~~Ri~yl~~hl~~v~~Ai~~dGv~v~GY~~WSl~Dn~eW~~g~~~rfGL~~ 361 (402)
|++|||||||||+++.+ ++.++|++||+||++||.+|++||++ ||||+|||+|||||||||.+||++||||++
T Consensus 390 Y~~ppI~ITENG~~~~~------~g~v~D~~Ri~Yl~~hl~~~~kAi~d-Gv~V~GY~~WSl~DnfEW~~Gy~~RfGLv~ 462 (497)
T PLN02998 390 YGNPPVYILENGQMTPH------SSSLVDTTRVKYLSSYIKAVLHSLRK-GSDVKGYFQWSLMDVFELFGGYERSFGLLY 462 (497)
T ss_pred cCCCCEEEeCCCCccCC------CCcccCHHHHHHHHHHHHHHHHHHHc-CCCEEEEeeccchhhhchhccccCccceEE
Confidence 99988999999998753 36789999999999999999999987 999999999999999999999999999999
Q ss_pred EcCCC-CccccccchHHHHHHHHHhC
Q 015710 362 VDYKD-GLRRSLKNSALWFKKFLRNQ 386 (402)
Q Consensus 362 VD~~~-~~~R~pK~S~~~y~~ii~~~ 386 (402)
||++| +++|+||+|++||+++|+++
T Consensus 463 VD~~~~~~~R~pK~S~~wy~~ii~~~ 488 (497)
T PLN02998 463 VDFKDPSLKRSPKLSAHWYSSFLKGT 488 (497)
T ss_pred ECCCCCCcceecccHHHHHHHHHhcc
Confidence 99997 58999999999999999987
No 5
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.3e-106 Score=804.32 Aligned_cols=366 Identities=40% Similarity=0.779 Sum_probs=334.7
Q ss_pred CCccccCCCCCcccchhhhchHHHHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEE
Q 015710 1 MAEKILDHSNGDVADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVT 80 (402)
Q Consensus 1 ~~~~~~~~~~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vt 80 (402)
+|+++..+.++++||||||||+|||+|||+||+|+||+||+||||+|+++ .+++|++||+||+++|++|+++||+|+||
T Consensus 41 ~~~~~~~~~~~~~a~d~YhrYkeDi~L~~emG~~~~R~SI~WsRIfP~g~-~~e~N~~gl~fY~~l~del~~~gIep~vT 119 (460)
T COG2723 41 IPGRLVSGDPPEEASDFYHRYKEDIALAKEMGLNAFRTSIEWSRIFPNGD-GGEVNEKGLRFYDRLFDELKARGIEPFVT 119 (460)
T ss_pred cCCcccCCCCCccccchhhhhHHHHHHHHHcCCCEEEeeeeEEEeecCCC-CCCcCHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 37788889999999999999999999999999999999999999999985 23899999999999999999999999999
Q ss_pred ccCCCCchhhHhhcCCCCChhhHHHHHHHHHHHHHHhCCcceEEEeecCCCcccccccccCccCCCCCCCCCCCCCCCCC
Q 015710 81 LFHWDTPQALEDEYGGFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVGECGYAKGTKAPGRCSNYIGNCPAGNS 160 (402)
Q Consensus 81 L~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~g~~v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~g~~ 160 (402)
|+|||+|.||++++|||.|++++++|++||+.||++|||+|++|+||||||+++.+||+.|.+||+..+.
T Consensus 120 L~Hfd~P~~L~~~ygGW~nR~~i~~F~~ya~~vf~~f~dkVk~W~TFNE~n~~~~~~y~~~~~~p~~~~~---------- 189 (460)
T COG2723 120 LYHFDLPLWLQKPYGGWENRETVDAFARYAATVFERFGDKVKYWFTFNEPNVVVELGYLYGGHPPGIVDP---------- 189 (460)
T ss_pred ecccCCcHHHhhccCCccCHHHHHHHHHHHHHHHHHhcCcceEEEEecchhhhhcccccccccCCCccCH----------
Confidence 9999999999999899999999999999999999999999999999999999999999999999997663
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHhcccCCCccEEEEecCCccccCCCCHHHHHHHHHHHhhhccccccccccCCCCHhH
Q 015710 161 ATEPYVAAHHLILSHATAVKLYRQNYQASQNGLIGITVSSIWAVPKFPTVASEKAAYRAIDFKFGWIFNPITYGSYPRSM 240 (402)
Q Consensus 161 ~~~~~~~~~nll~Aha~A~~~~r~~~~~~~~~~IGi~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~f~dp~~~G~Yp~~~ 240 (402)
+.++||+||+++|||+|++++|+..|. .+||++++..+.+|.+++|+|+.||+.++.+.+.+|+||+++|+||.++
T Consensus 190 -~~~~qa~hh~~lA~A~avk~~~~~~~~---~kIG~~~~~~p~YP~s~~p~dv~aA~~~~~~~n~~FlD~~~~G~yp~~~ 265 (460)
T COG2723 190 -KAAYQVAHHMLLAHALAVKAIKKINPK---GKVGIILNLTPAYPLSDKPEDVKAAENADRFHNRFFLDAQVKGEYPEYL 265 (460)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhhCCc---CceEEEeccCcCCCCCCCHHHHHHHHHHHHHhhhhhcchhhcCcCCHHH
Confidence 678999999999999999999998763 3999999999999999999999999999999999999999999999887
Q ss_pred HHHhccc--CCCCCccccc----------------------------------------------ccCCCCeeechHHHH
Q 015710 241 QHLVGNR--LPKFTKSQAE----------------------------------------------MTGSDWLSIYPKGIR 272 (402)
Q Consensus 241 ~~~l~~~--~p~~~~~~~~----------------------------------------------~~~~~w~~i~P~gl~ 272 (402)
...+... +|.++++|++ .++.|| +|+|+||+
T Consensus 266 ~~~~~~~~~~~~~~~~Dl~~lk~~~~DfiG~NYY~~s~v~~~~~~~~~~~~~~~~~~~~~~p~~~~sdwGW-eI~P~GL~ 344 (460)
T COG2723 266 EKELEENGILPEIEDGDLEILKENTVDFIGLNYYTPSRVKAAEPRYVSGYGPGGFFTSVPNPGLEVSDWGW-EIYPKGLY 344 (460)
T ss_pred HHHHHhcCCCcccCcchHHHHhcCCCCeEEEeeeeeeeEeeccCCcCCcccccccccccCCCCCcccCCCc-eeChHHHH
Confidence 7665321 2222222221 346777 99999999
Q ss_pred HHHHHHHHHcCCCCEEEeecCCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeeccccccccCC
Q 015710 273 ELLLYLKKKYNPPPIYITENGVGDVNSSSWPISYALNDTVRVNYYNDHLSYILEAINSGGVDVRGYFAWSFLDNYEWEYG 352 (402)
Q Consensus 273 ~~L~~~~~rY~~ppI~ITENG~~~~~~~~~~~~~~i~D~~Ri~yl~~hl~~v~~Ai~~dGv~v~GY~~WSl~Dn~eW~~g 352 (402)
.+|+++++||+ +||||||||++..++ ...+ .|+|++||+||++||.+|++||++ ||+|+||++||++||+||.+|
T Consensus 345 ~~l~~~~~rY~-~p~fItENG~G~~d~--~~~~-~i~DdyRI~Yl~~Hl~~v~~AI~d-Gv~v~GY~~Ws~iD~~sw~~g 419 (460)
T COG2723 345 DILEKLYERYG-IPLFITENGLGVKDE--VDFD-GINDDYRIDYLKEHLKAVKKAIED-GVDVRGYFAWSLIDNYSWANG 419 (460)
T ss_pred HHHHHHHHHhC-CCeEEecCCCCcccc--cccC-CcCchHHHHHHHHHHHHHHHHHHc-CCCcccceecccccccchhhc
Confidence 99999999999 559999999998875 2223 399999999999999999999988 999999999999999999999
Q ss_pred CcCceeeEEEcCCCCccccccchHHHHHHHHHhCC
Q 015710 353 YTSRFGIIYVDYKDGLRRSLKNSALWFKKFLRNQT 387 (402)
Q Consensus 353 ~~~rfGL~~VD~~~~~~R~pK~S~~~y~~ii~~~~ 387 (402)
|++||||++||++|.++|+||+|++|||++|++|+
T Consensus 420 y~kRYGli~VD~~~~~~R~~KkS~~WyK~vi~sng 454 (460)
T COG2723 420 YKKRYGLVYVDYDTDLERTPKKSFYWYKEVIESNG 454 (460)
T ss_pred cccccccEEEcccccceeeecCceeeeHHHHhcCC
Confidence 99999999999995479999999999999999999
No 6
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=100.00 E-value=8.8e-105 Score=817.04 Aligned_cols=358 Identities=35% Similarity=0.665 Sum_probs=323.3
Q ss_pred CCCcccchhhhchHHHHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCCCCch
Q 015710 9 SNGDVADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQ 88 (402)
Q Consensus 9 ~~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~ 88 (402)
.++++||||||||+|||+|||+||+++|||||+||||+|++. |.+|++||+||+++|++|+++||+|+|||+|||+|+
T Consensus 43 ~~~~~a~d~yhry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~--~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~ 120 (467)
T TIGR01233 43 YTAEPASDFYHKYPVDLELAEEYGVNGIRISIAWSRIFPTGY--GEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPE 120 (467)
T ss_pred CCCCccCchhhhHHHHHHHHHHcCCCEEEEecchhhccCCCC--CCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCcH
Confidence 377999999999999999999999999999999999999985 899999999999999999999999999999999999
Q ss_pred hhHhhcCCCCChhhHHHHHHHHHHHHHHhCCcceEEEeecCCCcccccccccCccCCCCCCCCCCCCCCCCCCChHHHHH
Q 015710 89 ALEDEYGGFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVGECGYAKGTKAPGRCSNYIGNCPAGNSATEPYVAA 168 (402)
Q Consensus 89 ~l~~~~gg~~~~~~~~~f~~ya~~~~~~~g~~v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~g~~~~~~~~~~ 168 (402)
||+++ |||+|++++++|++||+.|+++||+ |++|+|||||++++..||+.|.+|||.+.. .+..++++
T Consensus 121 ~L~~~-GGW~n~~~v~~F~~YA~~~f~~fgd-Vk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~----------~~~~~~a~ 188 (467)
T TIGR01233 121 ALHSN-GDFLNRENIEHFIDYAAFCFEEFPE-VNYWTTFNEIGPIGDGQYLVGKFPPGIKYD----------LAKVFQSH 188 (467)
T ss_pred HHHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CCEEEEecchhhhhhccchhcccCCCccch----------hHHHHHHH
Confidence 99986 9999999999999999999999998 999999999999999999999999996431 13678999
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCccEEEEecCCccccCC-CCHHHHHHHHHHHhhhccccccccccCCCCHhHHHHhcc-
Q 015710 169 HHLILSHATAVKLYRQNYQASQNGLIGITVSSIWAVPKF-PTVASEKAAYRAIDFKFGWIFNPITYGSYPRSMQHLVGN- 246 (402)
Q Consensus 169 ~nll~Aha~A~~~~r~~~~~~~~~~IGi~~~~~~~~P~~-~~~~d~~aa~~~~~~~~~~f~dp~~~G~Yp~~~~~~l~~- 246 (402)
||+++|||+||+++|+.. ++++||++++..+++|++ ++++|++||++.+++.++||+||++.|+||+.|++.++.
T Consensus 189 hn~l~AHa~A~~~~~~~~---~~~~IGi~~~~~~~~P~~~~~~~D~~aA~~~~~~~~~~f~d~~~~G~Yp~~~~~~~~~~ 265 (467)
T TIGR01233 189 HNMMVSHARAVKLYKDKG---YKGEIGVVHALPTKYPYDPENPADVRAAELEDIIHNKFILDATYLGHYSDKTMEGVNHI 265 (467)
T ss_pred HHHHHHHHHHHHHHHHhC---CCCeEEEEecCceeEECCCCCHHHHHHHHHHHHHhhhcccchhhCCCCCHHHHHHHHhh
Confidence 999999999999999975 459999999999999998 789999999999999899999999999999988775531
Q ss_pred ---c--CCCCCcccc-----------------------------------------------------------cccCCC
Q 015710 247 ---R--LPKFTKSQA-----------------------------------------------------------EMTGSD 262 (402)
Q Consensus 247 ---~--~p~~~~~~~-----------------------------------------------------------~~~~~~ 262 (402)
+ .|.|+++|+ +.+++|
T Consensus 266 ~~~~~~~~~~~~~d~~~i~~~~~~~DFlGinyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~g 345 (467)
T TIGR01233 266 LAENGGELDLRDEDFQALDAAKDLNDFLGINYYMSDWMQAFDGETEIIHNGKGEKGSSKYQIKGVGRRVAPDYVPRTDWD 345 (467)
T ss_pred hhccCCCCCCCHHHHHHHhccCCCCCEEEEccccceeeccCCCccccccCCccccCcccccCCCcccccCCCCCCcCCCC
Confidence 1 121221110 123455
Q ss_pred CeeechHHHHHHHHHHHHHcCC-CCEEEeecCCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEe
Q 015710 263 WLSIYPKGIRELLLYLKKKYNP-PPIYITENGVGDVNSSSWPISYALNDTVRVNYYNDHLSYILEAINSGGVDVRGYFAW 341 (402)
Q Consensus 263 w~~i~P~gl~~~L~~~~~rY~~-ppI~ITENG~~~~~~~~~~~~~~i~D~~Ri~yl~~hl~~v~~Ai~~dGv~v~GY~~W 341 (402)
| +|+|+||+.+|++++++|++ |||||||||++..++ . .++.++|++||+||++||++|++||++ ||||+||++|
T Consensus 346 w-~i~P~Gl~~~L~~~~~~Y~~~ppi~ItENG~~~~d~--~-~~g~i~D~~Ri~Yl~~hl~~~~~Ai~d-Gv~v~GY~~W 420 (467)
T TIGR01233 346 W-IIYPEGLYDQIMRVKNDYPNYKKIYITENGLGYKDE--F-VDNTVYDDGRIDYVKQHLEVLSDAIAD-GANVKGYFIW 420 (467)
T ss_pred C-eeChHHHHHHHHHHHHHcCCCCCEEEeCCCCCCCCC--C-CCCccCCHHHHHHHHHHHHHHHHHHHc-CCCEEEEeec
Confidence 6 99999999999999999997 679999999998664 2 257899999999999999999999987 9999999999
Q ss_pred eccccccccCCCcCceeeEEEcCCCCccccccchHHHHHHHHHhCCCC
Q 015710 342 SFLDNYEWEYGYTSRFGIIYVDYKDGLRRSLKNSALWFKKFLRNQTDV 389 (402)
Q Consensus 342 Sl~Dn~eW~~g~~~rfGL~~VD~~~~~~R~pK~S~~~y~~ii~~~~~~ 389 (402)
||||||||.+||++||||++||++| ++|+||+|++||+++|++++.+
T Consensus 421 Sl~Dn~Ew~~Gy~~RfGLv~VD~~t-~~R~~K~S~~wy~~ii~~~~~~ 467 (467)
T TIGR01233 421 SLMDVFSWSNGYEKRYGLFYVDFDT-QERYPKKSAHWYKKLAETQVIE 467 (467)
T ss_pred cchhhhchhccccCccceEEECCCC-CccccccHHHHHHHHHHhcCCC
Confidence 9999999999999999999999994 9999999999999999998864
No 7
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=100.00 E-value=9.8e-105 Score=818.27 Aligned_cols=356 Identities=35% Similarity=0.675 Sum_probs=322.9
Q ss_pred CCcccchhhhchHHHHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCCCCchh
Q 015710 10 NGDVADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQA 89 (402)
Q Consensus 10 ~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~ 89 (402)
++++||||||||+|||+|||+||+++|||||+||||+|++. |.+|++||+||+++|++|+++||+|+|||+|||+|+|
T Consensus 45 ~~~~a~d~Y~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~--g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~ 122 (469)
T PRK13511 45 TPDPASDFYHRYPEDLKLAEEFGVNGIRISIAWSRIFPDGY--GEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTPEA 122 (469)
T ss_pred CCCcccchhhhhHHHHHHHHHhCCCEEEeeccHhhcCcCCC--CCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCcHH
Confidence 78999999999999999999999999999999999999985 8899999999999999999999999999999999999
Q ss_pred hHhhcCCCCChhhHHHHHHHHHHHHHHhCCcceEEEeecCCCcccccccccCccCCCCCCCCCCCCCCCCCCChHHHHHH
Q 015710 90 LEDEYGGFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVGECGYAKGTKAPGRCSNYIGNCPAGNSATEPYVAAH 169 (402)
Q Consensus 90 l~~~~gg~~~~~~~~~f~~ya~~~~~~~g~~v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~g~~~~~~~~~~~ 169 (402)
|+++ |||+|+++++.|++||+.|+++||| |++|+|||||++++..||..|.+|||.+.. .+..++++|
T Consensus 123 L~~~-GGW~n~~~v~~F~~YA~~~~~~fgd-Vk~W~T~NEP~~~~~~gy~~G~~~Pg~~~~----------~~~~~~~~h 190 (469)
T PRK13511 123 LHSN-GDWLNRENIDHFVRYAEFCFEEFPE-VKYWTTFNEIGPIGDGQYLVGKFPPGIKYD----------LAKVFQSHH 190 (469)
T ss_pred HHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CCEEEEccchhhhhhcchhhcccCCCCCcc----------HHHHHHHHH
Confidence 9985 9999999999999999999999999 999999999999999999999999996531 136799999
Q ss_pred HHHHHHHHHHHHHHHhcccCCCccEEEEecCCccccCC-CCHHHHHHHHHHHhhhccccccccccCCCCHhHHHHhc---
Q 015710 170 HLILSHATAVKLYRQNYQASQNGLIGITVSSIWAVPKF-PTVASEKAAYRAIDFKFGWIFNPITYGSYPRSMQHLVG--- 245 (402)
Q Consensus 170 nll~Aha~A~~~~r~~~~~~~~~~IGi~~~~~~~~P~~-~~~~d~~aa~~~~~~~~~~f~dp~~~G~Yp~~~~~~l~--- 245 (402)
|+++|||+||++||+.. |+++||++++..+++|.+ ++++|++||++.++|.++||+||++.|+||+.|++.++
T Consensus 191 n~llAHa~A~~~~~~~~---~~g~IGi~~~~~~~~P~~~~~~~d~~aa~~~~~~~~~~f~dp~~~G~Yp~~~~~~~~~~~ 267 (469)
T PRK13511 191 NMMVAHARAVKLFKDKG---YKGEIGVVHALPTKYPIDPDNPEDVRAAELEDIIHNKFILDATYLGYYSEETMEGVNHIL 267 (469)
T ss_pred HHHHHHHHHHHHHHHhC---CCCeEEEEecCceEeeCCCCCHHHHHHHHHHHHHhhhcccchhhCCCCCHHHHHHHHHhh
Confidence 99999999999999974 459999999999999999 88999999999999999999999999999998876542
Q ss_pred ----ccCCCCCccc-----------------------------------------------------------ccccCCC
Q 015710 246 ----NRLPKFTKSQ-----------------------------------------------------------AEMTGSD 262 (402)
Q Consensus 246 ----~~~p~~~~~~-----------------------------------------------------------~~~~~~~ 262 (402)
.+ +.|+++| .+.+++|
T Consensus 268 ~~~~~~-l~~t~~d~~~ik~~~~~~DFiGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 346 (469)
T PRK13511 268 EANGGS-LDIRDEDFEILKAAKDLNDFLGINYYMSDWMRAYDGETEIIHNGTGEKGSSKYQLKGVGERVKPPDVPTTDWD 346 (469)
T ss_pred hhcCCC-CCCCHHHHHHHhcCCCCCCEEEechhhcceeecCCCccccccCCCCccccccccccCccccccCCCCCcCCCC
Confidence 00 0111111 0123466
Q ss_pred CeeechHHHHHHHHHHHHHcCC-CCEEEeecCCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEe
Q 015710 263 WLSIYPKGIRELLLYLKKKYNP-PPIYITENGVGDVNSSSWPISYALNDTVRVNYYNDHLSYILEAINSGGVDVRGYFAW 341 (402)
Q Consensus 263 w~~i~P~gl~~~L~~~~~rY~~-ppI~ITENG~~~~~~~~~~~~~~i~D~~Ri~yl~~hl~~v~~Ai~~dGv~v~GY~~W 341 (402)
| +|+|+||+.+|++++++|++ |||||||||++..++ .+.++.++|++|++||++||++|++||++ ||||+||++|
T Consensus 347 w-~i~P~Gl~~~l~~~~~~Y~~~~pi~ITENG~~~~d~--~~~~~~~~D~~Ri~yl~~hl~~~~~Ai~d-Gv~v~GY~~W 422 (469)
T PRK13511 347 W-IIYPQGLYDQLMRIKKDYPNYKKIYITENGLGYKDE--FVDGKTVDDDKRIDYVKQHLEVISDAISD-GANVKGYFIW 422 (469)
T ss_pred C-eECcHHHHHHHHHHHHHcCCCCCEEEecCCcCCCCC--cCCCCccCCHHHHHHHHHHHHHHHHHHHc-CCCEEEEeec
Confidence 7 99999999999999999997 679999999997654 33456899999999999999999999987 9999999999
Q ss_pred eccccccccCCCcCceeeEEEcCCCCccccccchHHHHHHHHHhCCC
Q 015710 342 SFLDNYEWEYGYTSRFGIIYVDYKDGLRRSLKNSALWFKKFLRNQTD 388 (402)
Q Consensus 342 Sl~Dn~eW~~g~~~rfGL~~VD~~~~~~R~pK~S~~~y~~ii~~~~~ 388 (402)
||||||||.+||++||||++||++| ++|+||+|++||+++|++++.
T Consensus 423 Sl~DnfEW~~Gy~~RfGl~~VD~~~-~~R~pK~S~~wy~~~i~~~~~ 468 (469)
T PRK13511 423 SLMDVFSWSNGYEKRYGLFYVDFET-QERYPKKSAYWYKKLAETKVI 468 (469)
T ss_pred ccccccchhcCccCccceEEECCCc-CccccccHHHHHHHHHHhCCC
Confidence 9999999999999999999999995 999999999999999999874
No 8
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=3.7e-104 Score=813.47 Aligned_cols=360 Identities=31% Similarity=0.563 Sum_probs=319.4
Q ss_pred CCcccchhhhchHHHHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCCCCchh
Q 015710 10 NGDVADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQA 89 (402)
Q Consensus 10 ~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~ 89 (402)
++++||||||||+|||+|||+||+|+|||||+||||+|+|. .+.+|++||+||+++|++|+++||+|+|||+|||+|+|
T Consensus 58 ~~~~a~D~Yhry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~-~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP~~ 136 (476)
T PRK09589 58 PNHEAIDFYHRYKEDIALFAEMGFKCFRTSIAWTRIFPQGD-ELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMPYH 136 (476)
T ss_pred CCcccccHHHhhHHHHHHHHHcCCCEEEeccchhhcCcCCC-CCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCHH
Confidence 67999999999999999999999999999999999999974 25689999999999999999999999999999999999
Q ss_pred hHhhcCCCCChhhHHHHHHHHHHHHHHhCCcceEEEeecCCCccccc-----ccc-cCc-cCCCCCCCCCCCCCCCCCCC
Q 015710 90 LEDEYGGFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVGEC-----GYA-KGT-KAPGRCSNYIGNCPAGNSAT 162 (402)
Q Consensus 90 l~~~~gg~~~~~~~~~f~~ya~~~~~~~g~~v~~w~t~NEp~~~~~~-----gy~-~g~-~~Pg~~~~~~~~~~~g~~~~ 162 (402)
|++++|||+|+++++.|++||+.||++|||+|++|+|||||++++.. ||. .|. +|||... ..
T Consensus 137 L~~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk~WiT~NEp~~~~~~~~~~~~~~~~g~~~~pg~~~-----------~~ 205 (476)
T PRK09589 137 LVTEYGGWRNRKLIDFFVRFAEVVFTRYKDKVKYWMTFNEINNQANFSEDFAPFTNSGILYSPGEDR-----------EQ 205 (476)
T ss_pred HHHhcCCcCChHHHHHHHHHHHHHHHHhcCCCCEEEEecchhhhhccccccCCccccccccCCCCch-----------hH
Confidence 99989999999999999999999999999999999999999998766 444 343 3665321 13
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccCCCccEEEEecCCccccCCCCHHHHHHHHHHHhhhccccccccccCCCCHhHHH
Q 015710 163 EPYVAAHHLILSHATAVKLYRQNYQASQNGLIGITVSSIWAVPKFPTVASEKAAYRAIDFKFGWIFNPITYGSYPRSMQH 242 (402)
Q Consensus 163 ~~~~~~~nll~Aha~A~~~~r~~~~~~~~~~IGi~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~f~dp~~~G~Yp~~~~~ 242 (402)
..++++||+++|||+|++++|+..+ +++||++++..+++|.+++++|++||+++..+ +.||+||++.|+||+.|++
T Consensus 206 ~~~~~~h~~llAha~A~~~~~~~~~---~~~iG~~~~~~~~~P~~~~~~d~~aa~~~~~~-~~~f~d~~~~G~YP~~~~~ 281 (476)
T PRK09589 206 IMYQAAHYELVASALAVKTGHEINP---DFQIGCMIAMCPIYPLTCAPNDMMMATKAMHR-RYWFTDVHVRGYYPQHILN 281 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC---CCcEEEEEeCCeeeeCCCCHHHHHHHHHHHHh-ccceecceeCCCCcHHHHH
Confidence 5799999999999999999999754 48999999999999999999999999998855 6799999999999999998
Q ss_pred Hhccc--CCCCCccccc--------------------------------------------ccCCCCeeechHHHHHHHH
Q 015710 243 LVGNR--LPKFTKSQAE--------------------------------------------MTGSDWLSIYPKGIRELLL 276 (402)
Q Consensus 243 ~l~~~--~p~~~~~~~~--------------------------------------------~~~~~w~~i~P~gl~~~L~ 276 (402)
+++.+ .|.|+++|++ .+++|| +|+|+||+.+|+
T Consensus 282 ~~~~~~~~~~~t~~d~~~l~~g~~DFlGiNyYts~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw-~i~P~Gl~~~L~ 360 (476)
T PRK09589 282 YFARKGFNLDITPEDNAILAEGCVDYIGFSYYMSFATKFHEDNPQLDYVETRDLVSNPYVKASEWGW-QIDPAGLRYSLN 360 (476)
T ss_pred HHHhcCCCCCCCHHHHHHHhcCCCCEEEEecccCcccccCCCCCCCCcccccccccCCCcccCCCCC-ccCcHHHHHHHH
Confidence 77542 2334433321 123566 999999999999
Q ss_pred HHHHHcCCCCEEEeecCCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHH-HcCCCCeEEEEEeeccccccccCC-Cc
Q 015710 277 YLKKKYNPPPIYITENGVGDVNSSSWPISYALNDTVRVNYYNDHLSYILEAI-NSGGVDVRGYFAWSFLDNYEWEYG-YT 354 (402)
Q Consensus 277 ~~~~rY~~ppI~ITENG~~~~~~~~~~~~~~i~D~~Ri~yl~~hl~~v~~Ai-~~dGv~v~GY~~WSl~Dn~eW~~g-~~ 354 (402)
+++++|++| |||||||++..++ .+.++.++|++||+||++||++|++|| ++ ||||+||++|||||||||.+| |+
T Consensus 361 ~~~~~Y~~P-i~ItENG~~~~d~--~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~~d-Gv~V~GY~~WSl~Dn~Ew~~G~y~ 436 (476)
T PRK09589 361 WFWDHYQLP-LFIVENGFGAIDQ--READGTVNDHYRIDYLAAHIREMKKAVVED-GVDLMGYTPWGCIDLVSAGTGEMK 436 (476)
T ss_pred HHHHhcCCC-EEEEeCCcccCCC--CCcCCcccCHHHHHHHHHHHHHHHHHHHhc-CCCeEEEeeccccccccccCCccc
Confidence 999999986 9999999998764 445678999999999999999999999 66 999999999999999999999 99
Q ss_pred CceeeEEEcCCC----CccccccchHHHHHHHHHhCCCCC
Q 015710 355 SRFGIIYVDYKD----GLRRSLKNSALWFKKFLRNQTDVA 390 (402)
Q Consensus 355 ~rfGL~~VD~~~----~~~R~pK~S~~~y~~ii~~~~~~~ 390 (402)
+|||||+||++| +++|+||+|++||+++|++++.++
T Consensus 437 ~RfGlv~VD~~~~~~~t~~R~pK~S~~wy~~~i~~ng~~~ 476 (476)
T PRK09589 437 KRYGFIYVDKDNEGKGTLERSRKKSFYWYRDVIANNGENI 476 (476)
T ss_pred cceeeEEEcCCCCCCcccccccccHHHHHHHHHHhcCCCC
Confidence 999999999986 479999999999999999988753
No 9
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=100.00 E-value=1.2e-105 Score=824.99 Aligned_cols=366 Identities=50% Similarity=0.928 Sum_probs=327.0
Q ss_pred CccccCCCCCcccchhhhchHHHHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEc
Q 015710 2 AEKILDHSNGDVADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (402)
Q Consensus 2 ~~~~~~~~~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 81 (402)
||++.+++++++||||||||+|||+|||+||+++|||||+|+||+|+|. .|++|.++|++|+++|++|+++||+|||||
T Consensus 41 ~~~~~~~~~~~~a~d~y~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~-~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL 119 (455)
T PF00232_consen 41 PGKVEDGSTGDVACDHYHRYKEDIALMKELGVNAYRFSISWSRIFPDGF-EGKVNEEGLDFYRDLIDELLENGIEPIVTL 119 (455)
T ss_dssp TTSSTTSSSSSSTTGHHHHHHHHHHHHHHHT-SEEEEE--HHHHSTTSS-SSSS-HHHHHHHHHHHHHHHHTT-EEEEEE
T ss_pred cceeeccccCcccccchhhhhHHHHHHHhhccceeeeecchhheeeccc-ccccCHhHhhhhHHHHHHHHhhccceeeee
Confidence 6788899999999999999999999999999999999999999999972 399999999999999999999999999999
Q ss_pred cCCCCchhhHhhcCCCCChhhHHHHHHHHHHHHHHhCCcceEEEeecCCCcccccccccCccCCCCCCCCCCCCCCCCCC
Q 015710 82 FHWDTPQALEDEYGGFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVGECGYAKGTKAPGRCSNYIGNCPAGNSA 161 (402)
Q Consensus 82 ~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~g~~v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~g~~~ 161 (402)
+|||+|+||++ +|||+|+++++.|++||+.|+++|||+|++|+|||||++++..||+.|.+|||..+.
T Consensus 120 ~H~~~P~~l~~-~ggw~~~~~~~~F~~Ya~~~~~~~gd~V~~w~T~NEp~~~~~~~y~~g~~~p~~~~~----------- 187 (455)
T PF00232_consen 120 YHFDLPLWLED-YGGWLNRETVDWFARYAEFVFERFGDRVKYWITFNEPNVFALLGYLYGGFPPGRDSL----------- 187 (455)
T ss_dssp ESS--BHHHHH-HTGGGSTHHHHHHHHHHHHHHHHHTTTBSEEEEEETHHHHHHHHHTSSSSTTCSSTH-----------
T ss_pred eecccccceee-cccccCHHHHHHHHHHHHHHHHHhCCCcceEEeccccceeecccccccccccccccc-----------
Confidence 99999999998 699999999999999999999999999999999999999999999999999996553
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcccCCCccEEEEecCCccccCCCCHHHH-HHHHHHHhhhccccccccccCCCCHhH
Q 015710 162 TEPYVAAHHLILSHATAVKLYRQNYQASQNGLIGITVSSIWAVPKFPTVASE-KAAYRAIDFKFGWIFNPITYGSYPRSM 240 (402)
Q Consensus 162 ~~~~~~~~nll~Aha~A~~~~r~~~~~~~~~~IGi~~~~~~~~P~~~~~~d~-~aa~~~~~~~~~~f~dp~~~G~Yp~~~ 240 (402)
+..++++||+++||++||++||+..+ +++||++++..+++|.+++++|+ +||++..+|.++||+||++.|+||..|
T Consensus 188 ~~~~~~~h~~l~AHa~A~~~~~~~~~---~~~IGi~~~~~~~~P~~~~~~d~~~Aa~~~~~~~n~~f~dpi~~G~YP~~~ 264 (455)
T PF00232_consen 188 KAFYQAAHNLLLAHAKAVKAIKEKYP---DGKIGIALNFSPFYPLSPSPEDDVAAAERADEFHNGWFLDPIFKGDYPEEM 264 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC---TSEEEEEEEEEEEEESSSSHHHHHHHHHHHHHHHTHHHHHHHHHSSSEHHH
T ss_pred chhhHHHhhHHHHHHHHHHHHhhccc---ceEEeccccccccCCCCccchhhHHHHHHHHHHhhcccccCchhhcCChHH
Confidence 67899999999999999999999874 59999999999999999987766 889999999999999999999999999
Q ss_pred HHHhccc--CCCCCccccc----------------------------------------------ccCCCCeeechHHHH
Q 015710 241 QHLVGNR--LPKFTKSQAE----------------------------------------------MTGSDWLSIYPKGIR 272 (402)
Q Consensus 241 ~~~l~~~--~p~~~~~~~~----------------------------------------------~~~~~w~~i~P~gl~ 272 (402)
+.+++.+ +|.|+++|++ .++++| +++|+||+
T Consensus 265 ~~~~~~~~~lp~ft~ed~~~ikg~~DFlGiNYYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~gw-~i~P~Gl~ 343 (455)
T PF00232_consen 265 KEYLGERGILPEFTEEDKELIKGSIDFLGINYYTSRYVRADPNPSSPPSYDSDAPFGQPYNPGGPTTDWGW-EIYPEGLR 343 (455)
T ss_dssp HHHHGGGTSSTTSGHHHHHHHTTTTSEEEEEESEEEEEEESSSSTSSTTHEEEESEEEECETSSEBCTTST-BBETHHHH
T ss_pred hhccccccccccccchhhhcccccchhhhhccccceeeccCccccccccccCCccccccccccccccccCc-ccccchHh
Confidence 9999987 8999988775 145777 89999999
Q ss_pred HHHHHHHHHcCCCCEEEeecCCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeeccccccccCC
Q 015710 273 ELLLYLKKKYNPPPIYITENGVGDVNSSSWPISYALNDTVRVNYYNDHLSYILEAINSGGVDVRGYFAWSFLDNYEWEYG 352 (402)
Q Consensus 273 ~~L~~~~~rY~~ppI~ITENG~~~~~~~~~~~~~~i~D~~Ri~yl~~hl~~v~~Ai~~dGv~v~GY~~WSl~Dn~eW~~g 352 (402)
.+|++++++|++|||+|||||+++.++ .+ ++.++|+.|++||++||.+|++||++ ||+|+||++|||||||||.+|
T Consensus 344 ~~L~~l~~~Y~~~pI~ITENG~~~~~~--~~-~~~v~D~~Ri~yl~~hl~~v~~Ai~d-Gv~V~GY~~WSl~Dn~Ew~~G 419 (455)
T PF00232_consen 344 DVLRYLKDRYGNPPIYITENGIGDPDE--VD-DGKVDDDYRIDYLQDHLNQVLKAIED-GVNVRGYFAWSLLDNFEWAEG 419 (455)
T ss_dssp HHHHHHHHHHTSSEEEEEEE---EETT--CT-TSHBSHHHHHHHHHHHHHHHHHHHHT-T-EEEEEEEETSB---BGGGG
T ss_pred hhhhhhccccCCCcEEEeccccccccc--cc-ccCcCcHHHHHHHHHHHHHHHhhhcc-CCCeeeEeeeccccccccccC
Confidence 999999999998889999999998875 22 28999999999999999999999977 999999999999999999999
Q ss_pred CcCceeeEEEcCCCCccccccchHHHHHHHHHhCCC
Q 015710 353 YTSRFGIIYVDYKDGLRRSLKNSALWFKKFLRNQTD 388 (402)
Q Consensus 353 ~~~rfGL~~VD~~~~~~R~pK~S~~~y~~ii~~~~~ 388 (402)
|++||||++||+.++++|+||+|++||+++|++|++
T Consensus 420 y~~rfGl~~VD~~~~~~R~pK~S~~~y~~~i~~ng~ 455 (455)
T PF00232_consen 420 YKKRFGLVYVDFFDTLKRTPKKSAYWYKDFIRSNGF 455 (455)
T ss_dssp GGSE--SEEEETTTTTEEEEBHHHHHHHHHHHHTEE
T ss_pred ccCccCceEEcCCCCcCeeeccHHHHHHHHHHhcCC
Confidence 999999999995447999999999999999999873
No 10
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=4.9e-104 Score=812.99 Aligned_cols=361 Identities=29% Similarity=0.509 Sum_probs=322.8
Q ss_pred CCcccchhhhchHHHHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCCCCchh
Q 015710 10 NGDVADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQA 89 (402)
Q Consensus 10 ~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~ 89 (402)
++++||||||||+|||+|||+||+|+|||||+||||+|+|. .|.+|++||+||+++|++|+++||+|+|||+|||+|+|
T Consensus 64 ~~~~a~d~Yhry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~-~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP~~ 142 (478)
T PRK09593 64 PAKEAIDMYHHYKEDIALFAEMGFKTYRMSIAWTRIFPKGD-ELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCPMH 142 (478)
T ss_pred CCCcccchHHhhHHHHHHHHHcCCCEEEEecchhhcccCCC-CCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCCHH
Confidence 68999999999999999999999999999999999999974 25799999999999999999999999999999999999
Q ss_pred hHhhcCCCCChhhHHHHHHHHHHHHHHhCCcceEEEeecCCCcccccccc-cCc-cCCCCCCCCCCCCCCCCCCChHHHH
Q 015710 90 LEDEYGGFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVGECGYA-KGT-KAPGRCSNYIGNCPAGNSATEPYVA 167 (402)
Q Consensus 90 l~~~~gg~~~~~~~~~f~~ya~~~~~~~g~~v~~w~t~NEp~~~~~~gy~-~g~-~~Pg~~~~~~~~~~~g~~~~~~~~~ 167 (402)
|++++|||+|++++++|++||+.|+++|||+|++|+|||||++++..||. .|. +|||... ....+++
T Consensus 143 L~~~~GGW~n~~~v~~F~~YA~~~~~~fgdrVk~WiT~NEP~~~~~~~~~~~g~~~~~g~~~-----------~~~~~~a 211 (478)
T PRK09593 143 LIEEYGGWRNRKMVGFYERLCRTLFTRYKGLVKYWLTFNEINMILHAPFMGAGLYFEEGENK-----------EQVKYQA 211 (478)
T ss_pred HHhhcCCCCChHHHHHHHHHHHHHHHHhcCcCCEEEeecchhhhhcccccccCcccCCCCch-----------hhhHHHH
Confidence 99888999999999999999999999999999999999999999988886 454 3776422 2457999
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCccEEEEecCCccccCCCCHHHHHHHHHHHhhhccccccccccCCCCHhHHHHhcc-
Q 015710 168 AHHLILSHATAVKLYRQNYQASQNGLIGITVSSIWAVPKFPTVASEKAAYRAIDFKFGWIFNPITYGSYPRSMQHLVGN- 246 (402)
Q Consensus 168 ~~nll~Aha~A~~~~r~~~~~~~~~~IGi~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~f~dp~~~G~Yp~~~~~~l~~- 246 (402)
+||+|+|||+|+++||+.. |+++||++++..+++|.+++++|++||++.+ +.+.||+||++.|+||+.|++.++.
T Consensus 212 ~h~~llAHa~A~~~~~~~~---~~g~VGi~~~~~~~~P~~~~~~D~~aa~~~~-~~~~~fld~~~~G~YP~~~~~~~~~~ 287 (478)
T PRK09593 212 AHHELVASAIATKIAHEVD---PENKVGCMLAAGQYYPNTCHPEDVWAAMKED-RENYFFIDVQARGEYPNYAKKRFERE 287 (478)
T ss_pred HHHHHHHHHHHHHHHHHhC---CCCeEEEEEeCCeeEeCCCCHHHHHHHHHHH-HHhhhhhhhhhCCCccHHHHHHHHhc
Confidence 9999999999999999864 4599999999999999999999999999887 4578999999999999999887753
Q ss_pred -cCCCCCccccc--------------------------------------------ccCCCCeeechHHHHHHHHHHHHH
Q 015710 247 -RLPKFTKSQAE--------------------------------------------MTGSDWLSIYPKGIRELLLYLKKK 281 (402)
Q Consensus 247 -~~p~~~~~~~~--------------------------------------------~~~~~w~~i~P~gl~~~L~~~~~r 281 (402)
..|.|+++|++ .+++|| +|+|+||+.+|++++++
T Consensus 288 ~~~~~~~~~d~~~ik~g~~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~gw-~i~P~Gl~~~l~~~~~~ 366 (478)
T PRK09593 288 GITIEMTEEDLELLKENTVDFISFSYYSSRVASGDPKVNEKTAGNIFASLKNPYLKASEWGW-QIDPLGLRITLNTIWDR 366 (478)
T ss_pred CCCCCCCHHHHHHHhcCCCCEEEEecccCcccccCCCCCCCCCCCccccccCCCcccCCCCC-EECHHHHHHHHHHHHHH
Confidence 23334333211 233566 99999999999999999
Q ss_pred cCCCCEEEeecCCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHH-cCCCCeEEEEEeeccccccccCC-CcCceee
Q 015710 282 YNPPPIYITENGVGDVNSSSWPISYALNDTVRVNYYNDHLSYILEAIN-SGGVDVRGYFAWSFLDNYEWEYG-YTSRFGI 359 (402)
Q Consensus 282 Y~~ppI~ITENG~~~~~~~~~~~~~~i~D~~Ri~yl~~hl~~v~~Ai~-~dGv~v~GY~~WSl~Dn~eW~~g-~~~rfGL 359 (402)
|++| |||||||++..++ .+.+|.++|++||+||++||.+|++||+ + ||+|+||++|||||||||.+| |++||||
T Consensus 367 Y~~P-i~ItENG~~~~d~--~~~~g~i~D~~Ri~yl~~hl~~~~~Ai~~d-Gv~v~GY~~WSl~Dn~EW~~G~y~~RfGl 442 (478)
T PRK09593 367 YQKP-MFIVENGLGAVDK--PDENGYVEDDYRIDYLAAHIKAMRDAINED-GVELLGYTTWGCIDLVSAGTGEMKKRYGF 442 (478)
T ss_pred cCCC-EEEEcCCCCCCCC--CCCCCccCCHHHHHHHHHHHHHHHHHHHHc-CCCEEEEeeccchHhhcccCCCccCeece
Confidence 9986 9999999998764 3456789999999999999999999996 6 999999999999999999999 9999999
Q ss_pred EEEcCCC----CccccccchHHHHHHHHHhCCCCCC
Q 015710 360 IYVDYKD----GLRRSLKNSALWFKKFLRNQTDVAS 391 (402)
Q Consensus 360 ~~VD~~~----~~~R~pK~S~~~y~~ii~~~~~~~~ 391 (402)
++||++| +++|+||+|++||+++|++++.+++
T Consensus 443 ~~VD~~~~~~~~~~R~pK~S~~wy~~ii~~~~~~~~ 478 (478)
T PRK09593 443 IYVDRDNEGKGTLKRSKKKSFDWYKKVIASNGEDLE 478 (478)
T ss_pred EEECCCCCCCcccceecccHHHHHHHHHHhCCcCCC
Confidence 9999986 4799999999999999999988653
No 11
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=100.00 E-value=1.2e-102 Score=801.94 Aligned_cols=360 Identities=29% Similarity=0.525 Sum_probs=319.5
Q ss_pred CCcccchhhhchHHHHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCCCCchh
Q 015710 10 NGDVADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQA 89 (402)
Q Consensus 10 ~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~ 89 (402)
++++||||||||+|||+|||+||+|+|||||+||||+|+|. .+.+|++||+||+++|++|+++||+|+|||+|||+|+|
T Consensus 60 ~~~~A~D~Yhry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~-~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~dlP~~ 138 (477)
T PRK15014 60 PNHEAVDFYGHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGD-EAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMPLH 138 (477)
T ss_pred CCCcccCcccccHHHHHHHHHcCCCEEEecccceeeccCCC-CCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHH
Confidence 77999999999999999999999999999999999999974 25689999999999999999999999999999999999
Q ss_pred hHhhcCCCCChhhHHHHHHHHHHHHHHhCCcceEEEeecCCCcc-----ccccccc-Ccc-CCCCCCCCCCCCCCCCCCC
Q 015710 90 LEDEYGGFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETV-----GECGYAK-GTK-APGRCSNYIGNCPAGNSAT 162 (402)
Q Consensus 90 l~~~~gg~~~~~~~~~f~~ya~~~~~~~g~~v~~w~t~NEp~~~-----~~~gy~~-g~~-~Pg~~~~~~~~~~~g~~~~ 162 (402)
|++++|||+|++++++|++||+.||++|||+|++|+|||||+++ +..||.. |.+ ||+... ..
T Consensus 139 L~~~yGGW~n~~~~~~F~~Ya~~~f~~fgdrVk~WiT~NEp~~~~~~~~~~~gy~~~g~~~~~~~~~-----------~~ 207 (477)
T PRK15014 139 LVQQYGSWTNRKVVDFFVRFAEVVFERYKHKVKYWMTFNEINNQRNWRAPLFGYCCSGVVYTEHENP-----------EE 207 (477)
T ss_pred HHHhcCCCCChHHHHHHHHHHHHHHHHhcCcCCEEEEecCcccccccccccccccccccccCCCCch-----------hH
Confidence 99989999999999999999999999999999999999999987 6778874 765 454211 23
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccCCCccEEEEecCCccccCCCCHHHHHHHHHHHhhhccccccccccCCCCHhHHH
Q 015710 163 EPYVAAHHLILSHATAVKLYRQNYQASQNGLIGITVSSIWAVPKFPTVASEKAAYRAIDFKFGWIFNPITYGSYPRSMQH 242 (402)
Q Consensus 163 ~~~~~~~nll~Aha~A~~~~r~~~~~~~~~~IGi~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~f~dp~~~G~Yp~~~~~ 242 (402)
..++++||+++|||+||+++|+..+ +++||++++..+++|.+++++|++||++...+ ..||+||++.|+||+.|++
T Consensus 208 ~~~~~~h~~llAHa~A~~~~~~~~~---~~~IGi~~~~~~~~P~~~~~~D~~Aa~~~~~~-~~~f~d~~~~G~YP~~~~~ 283 (477)
T PRK15014 208 TMYQVLHHQFVASALAVKAARRINP---EMKVGCMLAMVPLYPYSCNPDDVMFAQESMRE-RYVFTDVQLRGYYPSYVLN 283 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC---CCeEEEEEeCceeccCCCCHHHHHHHHHHHHh-cccccccccCCCCCHHHHH
Confidence 5799999999999999999999764 59999999999999999999999999987732 2359999999999999988
Q ss_pred HhcccC--CCCCccccc-------------------------------------------ccCCCCeeechHHHHHHHHH
Q 015710 243 LVGNRL--PKFTKSQAE-------------------------------------------MTGSDWLSIYPKGIRELLLY 277 (402)
Q Consensus 243 ~l~~~~--p~~~~~~~~-------------------------------------------~~~~~w~~i~P~gl~~~L~~ 277 (402)
.++.+. |.++++|++ .+++|| +|+|+||+.+|++
T Consensus 284 ~~~~~~~~~~~~~~d~~~i~~~~~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~gw-~i~P~Gl~~~l~~ 362 (477)
T PRK15014 284 EWERRGFNIKMEDGDLDVLREGTCDYLGFSYYMTNAVKAEGGTGDAISGFEGSVPNPYVKASDWGW-QIDPVGLRYALCE 362 (477)
T ss_pred HHHhcCCCCCCCHHHHHHHhcCCCCEEEEcceeCeeeccCCCCCCCccccccccCCCCcccCCCCC-ccCcHHHHHHHHH
Confidence 776532 333332211 223566 9999999999999
Q ss_pred HHHHcCCCCEEEeecCCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHH-cCCCCeEEEEEeeccccccccCC-CcC
Q 015710 278 LKKKYNPPPIYITENGVGDVNSSSWPISYALNDTVRVNYYNDHLSYILEAIN-SGGVDVRGYFAWSFLDNYEWEYG-YTS 355 (402)
Q Consensus 278 ~~~rY~~ppI~ITENG~~~~~~~~~~~~~~i~D~~Ri~yl~~hl~~v~~Ai~-~dGv~v~GY~~WSl~Dn~eW~~g-~~~ 355 (402)
++++|++| |||||||++..++ .+.+|.++|++||+||++||++|++||+ + ||||+||++|||||||||.+| |++
T Consensus 363 ~~~~Y~~P-i~ItENG~~~~d~--~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~~d-Gv~v~GY~~WSl~DnfEw~~G~y~~ 438 (477)
T PRK15014 363 LYERYQKP-LFIVENGFGAYDK--VEEDGSINDDYRIDYLRAHIEEMKKAVTYD-GVDLMGYTPWGCIDCVSFTTGQYSK 438 (477)
T ss_pred HHHhcCCC-EEEeCCCCCCCCC--cCcCCccCCHHHHHHHHHHHHHHHHHHHHc-CCCEEEEeeccchhhhcccCCCccC
Confidence 99999986 9999999998764 4457889999999999999999999996 7 999999999999999999999 999
Q ss_pred ceeeEEEcCCC----CccccccchHHHHHHHHHhCCCCC
Q 015710 356 RFGIIYVDYKD----GLRRSLKNSALWFKKFLRNQTDVA 390 (402)
Q Consensus 356 rfGL~~VD~~~----~~~R~pK~S~~~y~~ii~~~~~~~ 390 (402)
|||||+||++| +++|+||+|++||+++|++|+.++
T Consensus 439 RfGl~~VD~~~~~~~~~~R~pK~S~~wy~~ii~~ng~~~ 477 (477)
T PRK15014 439 RYGFIYVNKHDDGTGDMSRSRKKSFNWYKEVIASNGEKL 477 (477)
T ss_pred ccceEEECCCCCCCcccceecccHHHHHHHHHHhcCCCC
Confidence 99999999986 479999999999999999988753
No 12
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=100.00 E-value=1.6e-102 Score=799.62 Aligned_cols=361 Identities=30% Similarity=0.541 Sum_probs=325.4
Q ss_pred CCcccchhhhchHHHHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCCCCchh
Q 015710 10 NGDVADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQA 89 (402)
Q Consensus 10 ~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~ 89 (402)
++++||||||||+|||+||++||+|+|||||+||||+|++. .+.+|+++|+||+++|++|+++||+|||||+|||+|+|
T Consensus 62 ~~~~A~D~Yhry~eDi~l~~~lG~~~yR~si~WsRi~P~g~-~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~~ 140 (474)
T PRK09852 62 PSHEAIDFYHRYKEDIALMAEMGFKVFRTSIAWSRLFPQGD-ELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPMH 140 (474)
T ss_pred CCCccCchhhhhHHHHHHHHHcCCCeEEeeceeeeeeeCCC-CCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHH
Confidence 67999999999999999999999999999999999999975 25689999999999999999999999999999999999
Q ss_pred hHhhcCCCCChhhHHHHHHHHHHHHHHhCCcceEEEeecCCCcccccccc-cCc-cCCCCCCCCCCCCCCCCCCChHHHH
Q 015710 90 LEDEYGGFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVGECGYA-KGT-KAPGRCSNYIGNCPAGNSATEPYVA 167 (402)
Q Consensus 90 l~~~~gg~~~~~~~~~f~~ya~~~~~~~g~~v~~w~t~NEp~~~~~~gy~-~g~-~~Pg~~~~~~~~~~~g~~~~~~~~~ 167 (402)
|++++|||+|++++++|++||+.|+++|||+|++|+|||||++++..||. .|. +|||... ....+++
T Consensus 141 l~~~~GGW~~~~~~~~F~~ya~~~~~~fgd~Vk~WiTfNEPn~~~~~gy~~~g~~~~p~~~~-----------~~~~~~~ 209 (474)
T PRK09852 141 LVTEYGSWRNRKMVEFFSRYARTCFEAFDGLVKYWLTFNEINIMLHSPFSGAGLVFEEGENQ-----------DQVKYQA 209 (474)
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHHhcCcCCeEEeecchhhhhccCccccCcccCCCCCc-----------hHhHHHH
Confidence 99888999999999999999999999999999999999999999999996 675 5887532 1357999
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCccEEEEecCCccccCCCCHHHHHHHHHHHhhhccccccccccCCCCHhHHHHhccc
Q 015710 168 AHHLILSHATAVKLYRQNYQASQNGLIGITVSSIWAVPKFPTVASEKAAYRAIDFKFGWIFNPITYGSYPRSMQHLVGNR 247 (402)
Q Consensus 168 ~~nll~Aha~A~~~~r~~~~~~~~~~IGi~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~f~dp~~~G~Yp~~~~~~l~~~ 247 (402)
+||+++|||+||+++|+..+ +++||++++..+++|++++++|++||++++ +.+.||+||++.|+||+.|++.++.+
T Consensus 210 ~hn~llAHa~A~~~~~~~~~---~~~IGi~~~~~~~~P~~~~~~d~~AA~~~~-~~~~~~~d~~~~G~YP~~~~~~~~~~ 285 (474)
T PRK09852 210 AHHELVASALATKIAHEVNP---QNQVGCMLAGGNFYPYSCKPEDVWAALEKD-RENLFFIDVQARGAYPAYSARVFREK 285 (474)
T ss_pred HHHHHHHHHHHHHHHHHhCC---CCeEEEEEeCCeeeeCCCCHHHHHHHHHHH-HHhhhhcchhhCCCccHHHHHHHHhc
Confidence 99999999999999999764 589999999999999999999999998776 55789999999999999999888642
Q ss_pred --CCCCCccccc-------------------------------------------ccCCCCeeechHHHHHHHHHHHHHc
Q 015710 248 --LPKFTKSQAE-------------------------------------------MTGSDWLSIYPKGIRELLLYLKKKY 282 (402)
Q Consensus 248 --~p~~~~~~~~-------------------------------------------~~~~~w~~i~P~gl~~~L~~~~~rY 282 (402)
+|.|+++|++ .+++|| +|+|+||+.+|+++++||
T Consensus 286 ~~~p~~~~~d~~~i~~~~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~gw-~i~P~Gl~~~l~~~~~~Y 364 (474)
T PRK09852 286 GVTIDKAPGDDEILKNTVDFVSFSYYASRCASAEMNANNSSAANVVKSLRNPYLQVSDWGW-GIDPLGLRITMNMMYDRY 364 (474)
T ss_pred CCCCCCCHHHHHHhcCCCCEEEEccccCeecccCCCCCCCCcCCceecccCCCcccCCCCC-eeChHHHHHHHHHHHHhc
Confidence 4555444322 123556 999999999999999999
Q ss_pred CCCCEEEeecCCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeeccccccccCC-CcCceeeEE
Q 015710 283 NPPPIYITENGVGDVNSSSWPISYALNDTVRVNYYNDHLSYILEAINSGGVDVRGYFAWSFLDNYEWEYG-YTSRFGIIY 361 (402)
Q Consensus 283 ~~ppI~ITENG~~~~~~~~~~~~~~i~D~~Ri~yl~~hl~~v~~Ai~~dGv~v~GY~~WSl~Dn~eW~~g-~~~rfGL~~ 361 (402)
++| |||||||++..++ .+.++.++|++||+||++||++|++||++ ||||+|||+|||||||||.+| |++|||||+
T Consensus 365 ~~P-i~ItENG~~~~d~--~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~d-Gv~V~GY~~WSl~Dn~Ew~~G~y~~RfGLv~ 440 (474)
T PRK09852 365 QKP-LFLVENGLGAKDE--IAANGEINDDYRISYLREHIRAMGEAIAD-GIPLMGYTTWGCIDLVSASTGEMSKRYGFVY 440 (474)
T ss_pred CCC-EEEeCCCCCCCCC--cCCCCccCCHHHHHHHHHHHHHHHHHHHC-CCCEEEEEeecccccccccCCCccceeeeEE
Confidence 986 9999999998764 34567899999999999999999999987 999999999999999999999 999999999
Q ss_pred EcCCC----CccccccchHHHHHHHHHhCCCCCC
Q 015710 362 VDYKD----GLRRSLKNSALWFKKFLRNQTDVAS 391 (402)
Q Consensus 362 VD~~~----~~~R~pK~S~~~y~~ii~~~~~~~~ 391 (402)
||++| +++|+||+|++||+++|++++.+++
T Consensus 441 VD~~~~~~~t~~R~pK~S~~wy~~ii~~ng~~~~ 474 (474)
T PRK09852 441 VDRDDAGNGTLTRTRKKSFWWYKKVIASNGEDLE 474 (474)
T ss_pred ECCCCCCCcccceecccHHHHHHHHHHhCCccCC
Confidence 99986 5799999999999999999987653
No 13
>TIGR03356 BGL beta-galactosidase.
Probab=100.00 E-value=8.3e-100 Score=773.94 Aligned_cols=354 Identities=44% Similarity=0.826 Sum_probs=326.4
Q ss_pred CccccCCCCCcccchhhhchHHHHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEc
Q 015710 2 AEKILDHSNGDVADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (402)
Q Consensus 2 ~~~~~~~~~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 81 (402)
||++.++.++++||||||+|+|||++||+||+++|||||+|+||+|+|. |.+|++++++|+++|++|+++||+|||||
T Consensus 37 ~~~~~~~~~~~~a~d~y~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~--~~~n~~~~~~y~~~i~~l~~~gi~pivtL 114 (427)
T TIGR03356 37 PGKVKDGDTGDVACDHYHRYEEDVALMKELGVDAYRFSIAWPRIFPEGT--GPVNPKGLDFYDRLVDELLEAGIEPFVTL 114 (427)
T ss_pred CCcccCCCCCCccccHHHhHHHHHHHHHHcCCCeEEcccchhhcccCCC--CCcCHHHHHHHHHHHHHHHHcCCeeEEee
Confidence 5666677799999999999999999999999999999999999999974 89999999999999999999999999999
Q ss_pred cCCCCchhhHhhcCCCCChhhHHHHHHHHHHHHHHhCCcceEEEeecCCCcccccccccCccCCCCCCCCCCCCCCCCCC
Q 015710 82 FHWDTPQALEDEYGGFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVGECGYAKGTKAPGRCSNYIGNCPAGNSA 161 (402)
Q Consensus 82 ~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~g~~v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~g~~~ 161 (402)
+|||+|.||+++ |||.|+++++.|++||+.|+++||++|++|+|||||++++..||..|.+||+.++.
T Consensus 115 ~Hfd~P~~l~~~-gGw~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~~~~~~y~~G~~~P~~~~~----------- 182 (427)
T TIGR03356 115 YHWDLPQALEDR-GGWLNRDTAEWFAEYAAVVAERLGDRVKHWITLNEPWCSAFLGYGLGVHAPGLRDL----------- 182 (427)
T ss_pred ccCCccHHHHhc-CCCCChHHHHHHHHHHHHHHHHhCCcCCEEEEecCcceecccchhhccCCCCCccH-----------
Confidence 999999999987 99999999999999999999999999999999999999999999999999996432
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcccCCCccEEEEecCCccccCCCCHHHHHHHHHHHhhhccccccccccCCCCHhHH
Q 015710 162 TEPYVAAHHLILSHATAVKLYRQNYQASQNGLIGITVSSIWAVPKFPTVASEKAAYRAIDFKFGWIFNPITYGSYPRSMQ 241 (402)
Q Consensus 162 ~~~~~~~~nll~Aha~A~~~~r~~~~~~~~~~IGi~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~f~dp~~~G~Yp~~~~ 241 (402)
...++++||+++|||+|++++|++.| +++||++++..+++|.+++++|+.||++.++|.++||+||++.|+||..|+
T Consensus 183 ~~~~~~~hnll~Aha~A~~~~~~~~~---~~~IGi~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~f~d~~~~G~yP~~~~ 259 (427)
T TIGR03356 183 RAALQAAHHLLLAHGLAVQALRANGP---GAQVGIVLNLTPVYPASDSPEDVAAARRADGLLNRWFLDPLLKGRYPEDLL 259 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC---CCeEEEEEeCCeeeeCCCCHHHHHHHHHHHHHHhhhhhHHHhCCCCCHHHH
Confidence 35789999999999999999999865 599999999999999999999999999999999999999999999999999
Q ss_pred HHhcccCCCCCccccc-------------------------------------ccCCCCeeechHHHHHHHHHHHHHcCC
Q 015710 242 HLVGNRLPKFTKSQAE-------------------------------------MTGSDWLSIYPKGIRELLLYLKKKYNP 284 (402)
Q Consensus 242 ~~l~~~~p~~~~~~~~-------------------------------------~~~~~w~~i~P~gl~~~L~~~~~rY~~ 284 (402)
+.++. +|.|+++|++ .+++|| +++|+||+.+|+++++||++
T Consensus 260 ~~l~~-~p~~~~~d~~~l~~~~DFiGiNyY~~~~v~~~~~~~~~~~~~~~~~~~~~~gw-~i~P~Gl~~~L~~~~~rY~~ 337 (427)
T TIGR03356 260 EYLGD-APFVQDGDLETIAQPLDFLGINYYTRSVVAADPGTGAGFVEVPEGVPKTAMGW-EVYPEGLYDLLLRLKEDYPG 337 (427)
T ss_pred HHhcc-CCCCCHHHHHHhcCCCCEEEEeccccceeccCCCCCCCccccCCCCCcCCCCC-eechHHHHHHHHHHHHhcCC
Confidence 98873 5666555432 133567 99999999999999999999
Q ss_pred CCEEEeecCCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeeccccccccCCCcCceeeEEEcC
Q 015710 285 PPIYITENGVGDVNSSSWPISYALNDTVRVNYYNDHLSYILEAINSGGVDVRGYFAWSFLDNYEWEYGYTSRFGIIYVDY 364 (402)
Q Consensus 285 ppI~ITENG~~~~~~~~~~~~~~i~D~~Ri~yl~~hl~~v~~Ai~~dGv~v~GY~~WSl~Dn~eW~~g~~~rfGL~~VD~ 364 (402)
|||+|||||++..++ .+ +|.++|++||+||++||++|++||++ ||||+||++|||+|||||.+||++||||++||+
T Consensus 338 ppi~ITENG~~~~d~--~~-~g~~~D~~Ri~yl~~hl~~~~~Ai~d-Gv~v~GY~~Wsl~Dn~ew~~gy~~rfGl~~VD~ 413 (427)
T TIGR03356 338 PPIYITENGAAFDDE--VT-DGEVHDPERIAYLRDHLAALARAIEE-GVDVRGYFVWSLLDNFEWAEGYSKRFGLVHVDY 413 (427)
T ss_pred CCEEEeCCCCCcCCC--Cc-CCCcCCHHHHHHHHHHHHHHHHHHHC-CCCEEEEEecccccccchhcccccccceEEECC
Confidence 889999999998764 33 67899999999999999999999987 999999999999999999999999999999999
Q ss_pred CCCccccccchHHHH
Q 015710 365 KDGLRRSLKNSALWF 379 (402)
Q Consensus 365 ~~~~~R~pK~S~~~y 379 (402)
+| ++|+||+|++||
T Consensus 414 ~~-~~R~~K~S~~wy 427 (427)
T TIGR03356 414 ET-QKRTPKDSAKWY 427 (427)
T ss_pred CC-CcccccceeeeC
Confidence 95 999999999997
No 14
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=99.67 E-value=9.8e-15 Score=139.67 Aligned_cols=249 Identities=16% Similarity=0.212 Sum_probs=155.8
Q ss_pred ccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeE--EEEccCCCCchhhHhhcCCCCChhhHHHHHHHHHHHHHHhC
Q 015710 41 SWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTP--FVTLFHWDTPQALEDEYGGFLSPKIVKDFGDYADLCFKEFG 118 (402)
Q Consensus 41 ~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p--~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~g 118 (402)
-|++++|++ |.+|++. .+++++.++++||++ .+.+.|...|.|+... + .++..+.+.+|++.+++||+
T Consensus 2 kW~~~ep~~---G~~n~~~---~D~~~~~a~~~gi~v~gH~l~W~~~~P~W~~~~--~--~~~~~~~~~~~i~~v~~ry~ 71 (254)
T smart00633 2 KWDSTEPSR---GQFNFSG---ADAIVNFAKENGIKVRGHTLVWHSQTPDWVFNL--S--KETLLARLENHIKTVVGRYK 71 (254)
T ss_pred CcccccCCC---CccChHH---HHHHHHHHHHCCCEEEEEEEeecccCCHhhhcC--C--HHHHHHHHHHHHHHHHHHhC
Confidence 599999998 9999954 588999999999995 4456777899998642 2 56678999999999999999
Q ss_pred CcceEEEeecCCCcccccccccCccCCCCCCCCCCCCCCCCCCChHHHHH-HHHHHHHHHHHHHHHHhcccCCCccEEEE
Q 015710 119 DRVKHWITLNEPETVGECGYAKGTKAPGRCSNYIGNCPAGNSATEPYVAA-HHLILSHATAVKLYRQNYQASQNGLIGIT 197 (402)
Q Consensus 119 ~~v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~g~~~~~~~~~~-~nll~Aha~A~~~~r~~~~~~~~~~IGi~ 197 (402)
++|..|.++|||...... |.+. .....++ ... -..|+++.|+..|+ .++-+
T Consensus 72 g~i~~wdV~NE~~~~~~~---------~~~~------------~~w~~~~G~~~---i~~af~~ar~~~P~---a~l~~- 123 (254)
T smart00633 72 GKIYAWDVVNEALHDNGS---------GLRR------------SVWYQILGEDY---IEKAFRYAREADPD---AKLFY- 123 (254)
T ss_pred CcceEEEEeeecccCCCc---------cccc------------chHHHhcChHH---HHHHHHHHHHhCCC---CEEEE-
Confidence 999999999999852110 1111 0011111 111 22467777887764 66533
Q ss_pred ecCCccccCCCCHHHHHHHHHHHhhhccccccccccCCCCHhHHHHhcccCCCCCcccccccCCCCeeechHHHHHHHHH
Q 015710 198 VSSIWAVPKFPTVASEKAAYRAIDFKFGWIFNPITYGSYPRSMQHLVGNRLPKFTKSQAEMTGSDWLSIYPKGIRELLLY 277 (402)
Q Consensus 198 ~~~~~~~P~~~~~~d~~aa~~~~~~~~~~f~dp~~~G~Yp~~~~~~l~~~~p~~~~~~~~~~~~~w~~i~P~gl~~~L~~ 277 (402)
|-.... ... .. ......+. +-+....-| ++-+|-. ..+.. + ...|..+...|+.
T Consensus 124 -Ndy~~~--~~~-~k---~~~~~~~v-----~~l~~~g~~---iDgiGlQ-~H~~~--------~--~~~~~~~~~~l~~ 177 (254)
T smart00633 124 -NDYNTE--EPN-AK---RQAIYELV-----KKLKAKGVP---IDGIGLQ-SHLSL--------G--SPNIAEIRAALDR 177 (254)
T ss_pred -eccCCc--Ccc-HH---HHHHHHHH-----HHHHHCCCc---cceeeee-eeecC--------C--CCCHHHHHHHHHH
Confidence 321111 110 00 01111111 001100001 1112211 00000 0 1235679999999
Q ss_pred HHHHcCCCCEEEeecCCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeeccccccccCCCcCce
Q 015710 278 LKKKYNPPPIYITENGVGDVNSSSWPISYALNDTVRVNYYNDHLSYILEAINSGGVDVRGYFAWSFLDNYEWEYGYTSRF 357 (402)
Q Consensus 278 ~~~rY~~ppI~ITENG~~~~~~~~~~~~~~i~D~~Ri~yl~~hl~~v~~Ai~~dGv~v~GY~~WSl~Dn~eW~~g~~~rf 357 (402)
+.+. +.| |+|||.++...+. ...+.+++++++..+.+. . .|.|.++|.+.|..+|..+ .+.
T Consensus 178 ~~~~-g~p-i~iTE~dv~~~~~----------~~~qA~~~~~~l~~~~~~----p-~v~gi~~Wg~~d~~~W~~~--~~~ 238 (254)
T smart00633 178 FASL-GLE-IQITELDISGYPN----------PQAQAADYEEVFKACLAH----P-AVTGVTVWGVTDKYSWLDG--GAP 238 (254)
T ss_pred HHHc-CCc-eEEEEeecCCCCc----------HHHHHHHHHHHHHHHHcC----C-CeeEEEEeCCccCCcccCC--CCc
Confidence 9765 765 9999999986431 256667777777665532 2 6899999999999999875 577
Q ss_pred eeEEEcCCCCccccccchHHH
Q 015710 358 GIIYVDYKDGLRRSLKNSALW 378 (402)
Q Consensus 358 GL~~VD~~~~~~R~pK~S~~~ 378 (402)
||+.-|+ +|||++.+
T Consensus 239 ~L~d~~~------~~kpa~~~ 253 (254)
T smart00633 239 LLFDANY------QPKPAYWA 253 (254)
T ss_pred eeECCCC------CCChhhhc
Confidence 8984343 58888764
No 15
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.34 E-value=2.8e-12 Score=129.37 Aligned_cols=108 Identities=25% Similarity=0.454 Sum_probs=86.9
Q ss_pred hchHHHHHHHHHcCCCceee-ccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHhhc---
Q 015710 19 FRYKEDIALVKQVGFDSIRF-SISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEY--- 94 (402)
Q Consensus 19 ~~~~eDi~l~~~lG~~~~R~-si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~--- 94 (402)
..+++|+++||++|+|++|+ .++|++|||++ |+||++ .+|++|+.+.++||++++.+.+...|.||.+++
T Consensus 10 e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~e---G~ydF~---~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~ 83 (374)
T PF02449_consen 10 EEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEE---GQYDFS---WLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEI 83 (374)
T ss_dssp CHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBT---TB---H---HHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCC
T ss_pred HHHHHHHHHHHHcCCCEEEEEEechhhccCCC---CeeecH---HHHHHHHHHHhccCeEEEEecccccccchhhhcccc
Confidence 46899999999999999997 57999999998 999994 579999999999999999999999999998642
Q ss_pred ------------CCC-----CChhhHHHHHHHHHHHHHHhCCc--ceEEEeecCCCc
Q 015710 95 ------------GGF-----LSPKIVKDFGDYADLCFKEFGDR--VKHWITLNEPET 132 (402)
Q Consensus 95 ------------gg~-----~~~~~~~~f~~ya~~~~~~~g~~--v~~w~t~NEp~~ 132 (402)
|+. .++...+.+.++++.++++|++. |-.|.+.|||..
T Consensus 84 ~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~ 140 (374)
T PF02449_consen 84 LPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGY 140 (374)
T ss_dssp C-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTC
T ss_pred cccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCc
Confidence 222 24566788888899999999975 889999999975
No 16
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=99.24 E-value=3e-11 Score=115.80 Aligned_cols=109 Identities=17% Similarity=0.320 Sum_probs=90.9
Q ss_pred chHHHHHHHHHcCCCceeeccccCccc-ccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHhhcCCCC
Q 015710 20 RYKEDIALVKQVGFDSIRFSISWSRIL-PHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFL 98 (402)
Q Consensus 20 ~~~eDi~l~~~lG~~~~R~si~W~ri~-P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~ 98 (402)
..++|++.|+++|+|++|+.|.|..++ |.+. +.++...++.++++|+.+.++||.+||+||+. |.|.... +++.
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~--~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~--~~w~~~~-~~~~ 96 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNPG--YNYDETYLARLDRIVDAAQAYGIYVILDLHNA--PGWANGG-DGYG 96 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTSTT--TSBTHHHHHHHHHHHHHHHHTT-EEEEEEEES--TTCSSST-STTT
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCC--ccccHHHHHHHHHHHHHHHhCCCeEEEEeccC--ccccccc-cccc
Confidence 678999999999999999999998887 5652 56999999999999999999999999999874 7774332 3333
Q ss_pred -ChhhHHHHHHHHHHHHHHhCC--cceEEEeecCCCcc
Q 015710 99 -SPKIVKDFGDYADLCFKEFGD--RVKHWITLNEPETV 133 (402)
Q Consensus 99 -~~~~~~~f~~ya~~~~~~~g~--~v~~w~t~NEp~~~ 133 (402)
.....+.|.++++.++++|++ .|..|.++|||...
T Consensus 97 ~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~ 134 (281)
T PF00150_consen 97 NNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGG 134 (281)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCST
T ss_pred cchhhHHHHHhhhhhhccccCCCCcEEEEEecCCcccc
Confidence 344678899999999999954 58899999999854
No 17
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=99.00 E-value=5e-08 Score=94.07 Aligned_cols=269 Identities=16% Similarity=0.172 Sum_probs=151.8
Q ss_pred cccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEE-E-ccCCCCchhhHhhcCCCCChhhHHHHHHHHHHHHHHh
Q 015710 40 ISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFV-T-LFHWDTPQALEDEYGGFLSPKIVKDFGDYADLCFKEF 117 (402)
Q Consensus 40 i~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~v-t-L~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~ 117 (402)
+-|.-|+|+. |.||+++- |.+++-++++|+..-- | +.|--.|.||.. --+..+...+...++...|++||
T Consensus 67 mKwe~i~p~~---G~f~Fe~A---D~ia~FAr~h~m~lhGHtLvW~~q~P~W~~~--~e~~~~~~~~~~e~hI~tV~~rY 138 (345)
T COG3693 67 MKWEAIEPER---GRFNFEAA---DAIANFARKHNMPLHGHTLVWHSQVPDWLFG--DELSKEALAKMVEEHIKTVVGRY 138 (345)
T ss_pred cccccccCCC---CccCccch---HHHHHHHHHcCCeeccceeeecccCCchhhc--cccChHHHHHHHHHHHHHHHHhc
Confidence 5688888876 99999764 8999999999987643 2 234566999853 23667889999999999999999
Q ss_pred CCcceEEEeecCCCcccccccccCccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhcccCCCccEEEE
Q 015710 118 GDRVKHWITLNEPETVGECGYAKGTKAPGRCSNYIGNCPAGNSATEPYVAAHHLILSHATAVKLYRQNYQASQNGLIGIT 197 (402)
Q Consensus 118 g~~v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~g~~~~~~~~~~~nll~Aha~A~~~~r~~~~~~~~~~IGi~ 197 (402)
++.|..|=+.|||.- ...++-...+--+.. +.+..+ .|++.-|+..|. ++.-+
T Consensus 139 kg~~~sWDVVNE~vd-d~g~~R~s~w~~~~~------------gpd~I~----------~aF~~AreadP~---AkL~~- 191 (345)
T COG3693 139 KGSVASWDVVNEAVD-DQGSLRRSAWYDGGT------------GPDYIK----------LAFHIAREADPD---AKLVI- 191 (345)
T ss_pred cCceeEEEecccccC-CCchhhhhhhhccCC------------ccHHHH----------HHHHHHHhhCCC---ceEEe-
Confidence 999999999999864 221222111111100 112222 355556776654 66332
Q ss_pred ecCCccccCCCCHHHHHHHHHHHhhhccccccccccCCCCHhHHHHhccc-CCCCCccccc-ccCCCCeeechHHHHHHH
Q 015710 198 VSSIWAVPKFPTVASEKAAYRAIDFKFGWIFNPITYGSYPRSMQHLVGNR-LPKFTKSQAE-MTGSDWLSIYPKGIRELL 275 (402)
Q Consensus 198 ~~~~~~~P~~~~~~d~~aa~~~~~~~~~~f~dp~~~G~Yp~~~~~~l~~~-~p~~~~~~~~-~~~~~w~~i~P~gl~~~L 275 (402)
.... ...++ +..+ .|. . |++.|.++ .|. ..-..+ --+.+| .. ++-.+..+
T Consensus 192 NDY~----ie~~~----~kr~--~~~-n--------------lI~~LkekG~pI-DgiG~QsH~~~~~-~~-~~~~~~a~ 243 (345)
T COG3693 192 NDYS----IEGNP----AKRN--YVL-N--------------LIEELKEKGAPI-DGIGIQSHFSGDG-PS-IEKMRAAL 243 (345)
T ss_pred eccc----ccCCh----HHHH--HHH-H--------------HHHHHHHCCCCc-cceeeeeeecCCC-CC-HHHHHHHH
Confidence 2221 12222 1111 000 0 12222111 111 000000 012233 32 23344445
Q ss_pred HHHHHHcCCCCEEEeecCCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeeccccccccCCCcC
Q 015710 276 LYLKKKYNPPPIYITENGVGDVNSSSWPISYALNDTVRVNYYNDHLSYILEAINSGGVDVRGYFAWSFLDNYEWEYGYTS 355 (402)
Q Consensus 276 ~~~~~rY~~ppI~ITENG~~~~~~~~~~~~~~i~D~~Ri~yl~~hl~~v~~Ai~~dGv~v~GY~~WSl~Dn~eW~~g~~~ 355 (402)
..+.+. +.| |+|||--+.... + ..++-.+..+.++.+..+..+ ...- +-.|.+.+.|.++|+++|..|..+
T Consensus 244 ~~~~k~-Gl~-i~VTELD~~~~~-P---~~~~p~~~~~~~~~~~~~f~~--~~~~-~~~v~~it~WGi~D~ySWl~g~~~ 314 (345)
T COG3693 244 LKFSKL-GLP-IYVTELDMSDYT-P---DSGAPRLYLQKAASRAKAFLL--LLLN-PNQVKAITFWGITDRYSWLRGRDP 314 (345)
T ss_pred HHHhhc-CCC-ceEEEeeeeccC-C---CCccHHHHHHHHHHHHHHHHH--HHhc-ccccceEEEeeeccCcccccCCcc
Confidence 555444 765 999999888742 1 111111222222221111111 1223 566999999999999999999998
Q ss_pred cee----eEEEcCCCCccccccchHHHHHHHHHh
Q 015710 356 RFG----IIYVDYKDGLRRSLKNSALWFKKFLRN 385 (402)
Q Consensus 356 rfG----L~~VD~~~~~~R~pK~S~~~y~~ii~~ 385 (402)
+++ |. +|-+ =.|||..++..++...
T Consensus 315 ~~~~~rPl~-~D~n----~~pKPa~~aI~e~la~ 343 (345)
T COG3693 315 RRDGLRPLL-FDDN----YQPKPAYKAIAEVLAP 343 (345)
T ss_pred CcCCCCCcc-cCCC----CCcchHHHHHHHHhcC
Confidence 886 22 2322 2699999999877654
No 18
>PRK10150 beta-D-glucuronidase; Provisional
Probab=98.98 E-value=1.3e-07 Score=101.39 Aligned_cols=265 Identities=17% Similarity=0.147 Sum_probs=148.1
Q ss_pred hhchHHHHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHh-----
Q 015710 18 YFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALED----- 92 (402)
Q Consensus 18 y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~----- 92 (402)
...+..|+++||++|+|++|+|- .|.. .++++.|-+.||=++.-+.-+....|+..
T Consensus 312 ~~~~~~d~~l~K~~G~N~vR~sh-----~p~~--------------~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~ 372 (604)
T PRK10150 312 EVLNVHDHNLMKWIGANSFRTSH-----YPYS--------------EEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAG 372 (604)
T ss_pred HHHHHHHHHHHHHCCCCEEEecc-----CCCC--------------HHHHHHHHhcCcEEEEeccccccccccccccccc
Confidence 34578899999999999999952 2332 46788899999988876643332222210
Q ss_pred --hcCCCC----ChhhHHHHHHHHHHHHHHhCCc--ceEEEeecCCCcccccccccCccCCCCCCCCCCCCCCCCCCChH
Q 015710 93 --EYGGFL----SPKIVKDFGDYADLCFKEFGDR--VKHWITLNEPETVGECGYAKGTKAPGRCSNYIGNCPAGNSATEP 164 (402)
Q Consensus 93 --~~gg~~----~~~~~~~f~~ya~~~~~~~g~~--v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~g~~~~~~ 164 (402)
....|. +++..+.+.+-++.+++++.++ |-.|.+-||+... .++
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~mv~r~~NHPSIi~Ws~gNE~~~~----------~~~------------------ 424 (604)
T PRK10150 373 NKPKETYSEEAVNGETQQAHLQAIRELIARDKNHPSVVMWSIANEPASR----------EQG------------------ 424 (604)
T ss_pred ccccccccccccchhHHHHHHHHHHHHHHhccCCceEEEEeeccCCCcc----------chh------------------
Confidence 001222 3567788888899999999875 8899999997310 001
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCccEEEEecCCccccCCCCHHHHHHHHHHHhhhccccccccccCCCCHhHHHHh
Q 015710 165 YVAAHHLILSHATAVKLYRQNYQASQNGLIGITVSSIWAVPKFPTVASEKAAYRAIDFKFGWIFNPITYGSYPRSMQHLV 244 (402)
Q Consensus 165 ~~~~~nll~Aha~A~~~~r~~~~~~~~~~IGi~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~f~dp~~~G~Yp~~~~~~l 244 (402)
... .+...++.+|+..|. -.|..+.+.. ..+.... ..-.+|.+....|+.-.
T Consensus 425 ~~~------~~~~l~~~~k~~Dpt---R~vt~~~~~~-~~~~~~~--------------~~~~~Dv~~~N~Y~~wy---- 476 (604)
T PRK10150 425 ARE------YFAPLAELTRKLDPT---RPVTCVNVMF-ATPDTDT--------------VSDLVDVLCLNRYYGWY---- 476 (604)
T ss_pred HHH------HHHHHHHHHHhhCCC---CceEEEeccc-CCccccc--------------ccCcccEEEEcccceec----
Confidence 111 123445677888765 2233332211 0010000 01123433333333100
Q ss_pred cccCCCCCcccccccCCCCeeechHHHHHHHHHHHHHcCCCCEEEeecCCCCCCCCCCCCCCccCCHHHHHHHHHHHHHH
Q 015710 245 GNRLPKFTKSQAEMTGSDWLSIYPKGIRELLLYLKKKYNPPPIYITENGVGDVNSSSWPISYALNDTVRVNYYNDHLSYI 324 (402)
Q Consensus 245 ~~~~p~~~~~~~~~~~~~w~~i~P~gl~~~L~~~~~rY~~ppI~ITENG~~~~~~~~~~~~~~i~D~~Ri~yl~~hl~~v 324 (402)
.. ..+.. . .-..+...+....+.++.| ++|||.|.+....--......-.+++...|+++|+..+
T Consensus 477 ~~------~~~~~-------~-~~~~~~~~~~~~~~~~~kP-~~isEyg~~~~~~~h~~~~~~~~ee~q~~~~~~~~~~~ 541 (604)
T PRK10150 477 VD------SGDLE-------T-AEKVLEKELLAWQEKLHKP-IIITEYGADTLAGLHSMYDDMWSEEYQCAFLDMYHRVF 541 (604)
T ss_pred CC------CCCHH-------H-HHHHHHHHHHHHHHhcCCC-EEEEccCCccccccccCCCCCCCHHHHHHHHHHHHHHH
Confidence 00 00000 0 0012344455555566665 99999995432110000011223566777777777654
Q ss_pred HHHHHcCCCCeEEEEEeeccccccccCCC----cCceeeEEEcCCCCccccccchHHHHHHHHH
Q 015710 325 LEAINSGGVDVRGYFAWSFLDNYEWEYGY----TSRFGIIYVDYKDGLRRSLKNSALWFKKFLR 384 (402)
Q Consensus 325 ~~Ai~~dGv~v~GY~~WSl~Dn~eW~~g~----~~rfGL~~VD~~~~~~R~pK~S~~~y~~ii~ 384 (402)
. + -=.|.|-|.|.+.|- .+..|. ....||+ +..|+||++++.||++-+
T Consensus 542 ~----~-~p~~~G~~iW~~~D~-~~~~g~~~~~g~~~Gl~------~~dr~~k~~~~~~k~~~~ 593 (604)
T PRK10150 542 D----R-VPAVVGEQVWNFADF-ATSQGILRVGGNKKGIF------TRDRQPKSAAFLLKKRWT 593 (604)
T ss_pred h----c-CCceEEEEEEeeecc-CCCCCCcccCCCcceeE------cCCCCChHHHHHHHHHhh
Confidence 4 3 245999999999992 222221 1366887 355789999999999874
No 19
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=98.97 E-value=1.1e-07 Score=94.15 Aligned_cols=282 Identities=18% Similarity=0.206 Sum_probs=158.8
Q ss_pred HHHHHHcCCCceeec--cccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEE--EccCCCCchhhHhhcCCCCCh
Q 015710 25 IALVKQVGFDSIRFS--ISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFV--TLFHWDTPQALEDEYGGFLSP 100 (402)
Q Consensus 25 i~l~~~lG~~~~R~s--i~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~v--tL~H~~~P~~l~~~~gg~~~~ 100 (402)
...+-.--+|.+-.. +-|..++|.+ |.+|++. .+++++.++++||++-- -+.|--.|.|+... .-+...
T Consensus 27 ~~~~~~~~Fn~~t~eN~~Kw~~~e~~~---g~~~~~~---~D~~~~~a~~~g~~vrGH~LvW~~~~P~w~~~~-~~~~~~ 99 (320)
T PF00331_consen 27 YRELFAKHFNSVTPENEMKWGSIEPEP---GRFNFES---ADAILDWARENGIKVRGHTLVWHSQTPDWVFNL-ANGSPD 99 (320)
T ss_dssp HHHHHHHH-SEEEESSTTSHHHHESBT---TBEE-HH---HHHHHHHHHHTT-EEEEEEEEESSSS-HHHHTS-TTSSBH
T ss_pred HHHHHHHhCCeeeeccccchhhhcCCC---CccCccc---hhHHHHHHHhcCcceeeeeEEEcccccceeeec-cCCCcc
Confidence 444444556666655 8999999998 9999954 69999999999999874 34466789999752 123333
Q ss_pred h---hHHHHHHHHHHHHHHhC--CcceEEEeecCCCcccccccccCccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 015710 101 K---IVKDFGDYADLCFKEFG--DRVKHWITLNEPETVGECGYAKGTKAPGRCSNYIGNCPAGNSATEPYVAAHHLILSH 175 (402)
Q Consensus 101 ~---~~~~f~~ya~~~~~~~g--~~v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~g~~~~~~~~~~~nll~Ah 175 (402)
+ ......+|.+.+++||+ .+|..|=++|||..... .+-|.++ ...++++-. ---
T Consensus 100 ~~~~~~~~l~~~I~~v~~~y~~~g~i~~WDVvNE~i~~~~-------~~~~~r~------------~~~~~~lG~--~yi 158 (320)
T PF00331_consen 100 EKEELRARLENHIKTVVTRYKDKGRIYAWDVVNEAIDDDG-------NPGGLRD------------SPWYDALGP--DYI 158 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTTTESEEEEEES-B-TTS-------SSSSBCT------------SHHHHHHTT--CHH
T ss_pred cHHHHHHHHHHHHHHHHhHhccccceEEEEEeeecccCCC-------ccccccC------------ChhhhcccH--hHH
Confidence 3 78889999999999999 48999999999973221 0111111 122222210 011
Q ss_pred HHHHHHHHHhcccCCCccEEEEecCCccccCCCCHHHHHHHHHHHhhhccccccccccCCCCHhHHHHhcccCCCCCccc
Q 015710 176 ATAVKLYRQNYQASQNGLIGITVSSIWAVPKFPTVASEKAAYRAIDFKFGWIFNPITYGSYPRSMQHLVGNRLPKFTKSQ 255 (402)
Q Consensus 176 a~A~~~~r~~~~~~~~~~IGi~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~f~dp~~~G~Yp~~~~~~l~~~~p~~~~~~ 255 (402)
..|++.-|+..|+ ++.-+ |-...+.. +.. .....+...+ .-.| -| ++-+|-.
T Consensus 159 ~~aF~~A~~~~P~---a~L~~--NDy~~~~~-----~k~--~~~~~lv~~l----~~~g-vp---IdgIG~Q-------- 210 (320)
T PF00331_consen 159 ADAFRAAREADPN---AKLFY--NDYNIESP-----AKR--DAYLNLVKDL----KARG-VP---IDGIGLQ-------- 210 (320)
T ss_dssp HHHHHHHHHHHTT---SEEEE--EESSTTST-----HHH--HHHHHHHHHH----HHTT-HC---S-EEEEE--------
T ss_pred HHHHHHHHHhCCC---cEEEe--ccccccch-----HHH--HHHHHHHHHH----HhCC-Cc---cceechh--------
Confidence 3456666777663 55333 32222111 110 0001110000 0001 00 0111110
Q ss_pred ccccCCCCeeechHHHHHHHHHHHHHcCCCCEEEeecCCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCCe
Q 015710 256 AEMTGSDWLSIYPKGIRELLLYLKKKYNPPPIYITENGVGDVNSSSWPISYALNDTVRVNYYNDHLSYILEAINSGGVDV 335 (402)
Q Consensus 256 ~~~~~~~w~~i~P~gl~~~L~~~~~rY~~ppI~ITENG~~~~~~~~~~~~~~i~D~~Ri~yl~~hl~~v~~Ai~~dGv~v 335 (402)
. .-..+. .|..+...|+++.+ .+.| |.|||.-+...... . ..-.+..+.+++++.+..+.+.-. ..|
T Consensus 211 ~-H~~~~~---~~~~i~~~l~~~~~-~Gl~-i~ITElDv~~~~~~---~-~~~~~~~qA~~~~~~~~~~~~~~~---~~v 277 (320)
T PF00331_consen 211 S-HFDAGY---PPEQIWNALDRFAS-LGLP-IHITELDVRDDDNP---P-DAEEEEAQAEYYRDFLTACFSHPP---AAV 277 (320)
T ss_dssp E-EEETTS---SHHHHHHHHHHHHT-TTSE-EEEEEEEEESSSTT---S-CHHHHHHHHHHHHHHHHHHHHTTH---CTE
T ss_pred h-ccCCCC---CHHHHHHHHHHHHH-cCCc-eEEEeeeecCCCCC---c-chHHHHHHHHHHHHHHHHHHhCCc---cCC
Confidence 0 000111 17889999999864 5765 99999998875421 0 011245566777776655544311 179
Q ss_pred EEEEEeeccccccccCCCc-CceeeEEEcCCCCccccccchHHHHHH
Q 015710 336 RGYFAWSFLDNYEWEYGYT-SRFGIIYVDYKDGLRRSLKNSALWFKK 381 (402)
Q Consensus 336 ~GY~~WSl~Dn~eW~~g~~-~rfGL~~VD~~~~~~R~pK~S~~~y~~ 381 (402)
.|.++|.+.|+.+|..... .+=+|+.-|+ +|||+++.+.+
T Consensus 278 ~git~Wg~~D~~sW~~~~~~~~~~lfd~~~------~~Kpa~~~~~~ 318 (320)
T PF00331_consen 278 EGITWWGFTDGYSWRPDTPPDRPLLFDEDY------QPKPAYDAIVD 318 (320)
T ss_dssp EEEEESSSBTTGSTTGGHSEG--SSB-TTS------BB-HHHHHHHH
T ss_pred CEEEEECCCCCCcccCCCCCCCCeeECCCc------CCCHHHHHHHh
Confidence 9999999999999987633 3345663333 59999887765
No 20
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=98.97 E-value=1.9e-07 Score=92.23 Aligned_cols=248 Identities=15% Similarity=0.189 Sum_probs=134.1
Q ss_pred HHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccC---CCCchhhHhhcCCCCC-
Q 015710 24 DIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFH---WDTPQALEDEYGGFLS- 99 (402)
Q Consensus 24 Di~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H---~~~P~~l~~~~gg~~~- 99 (402)
=+++||+.|+|++|+-+ | +-|.. .|..|. +.-.++..+.+++||+.+|++|- |.-|..-..+ ..|.+
T Consensus 29 ~~~ilk~~G~N~vRlRv-w--v~P~~--~g~~~~---~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P-~aW~~~ 99 (332)
T PF07745_consen 29 LFQILKDHGVNAVRLRV-W--VNPYD--GGYNDL---EDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKP-AAWANL 99 (332)
T ss_dssp HHHHHHHTT--EEEEEE----SS-TT--TTTTSH---HHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B---TTCTSS
T ss_pred HHHHHHhcCCCeEEEEe-c--cCCcc--cccCCH---HHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCC-ccCCCC
Confidence 37999999999999987 5 23433 155554 67789999999999999999974 2234321111 56877
Q ss_pred --hhhHHHHHHHHHHHHHHhCC---cceEEEeecCCCcccccccccCccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 015710 100 --PKIVKDFGDYADLCFKEFGD---RVKHWITLNEPETVGECGYAKGTKAPGRCSNYIGNCPAGNSATEPYVAAHHLILS 174 (402)
Q Consensus 100 --~~~~~~f~~ya~~~~~~~g~---~v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~g~~~~~~~~~~~nll~A 174 (402)
.+..+.-.+|.+.+.+.++. .++++++=||.+.-. .+|-|... -+..+-.++.|
T Consensus 100 ~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gm-------lwp~g~~~--------------~~~~~a~ll~a 158 (332)
T PF07745_consen 100 SFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGM-------LWPDGKPS--------------NWDNLAKLLNA 158 (332)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGES-------TBTTTCTT---------------HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCccccccc-------cCcCCCcc--------------CHHHHHHHHHH
Confidence 55678888999999887754 589999999988422 24555422 24444556655
Q ss_pred HHHHHHHHHHhcccCCCccEEEEecCCccccCCCCHHHHHHHHHHH-hh-hccccccccccCCCCHhHHHHhcccCCCCC
Q 015710 175 HATAVKLYRQNYQASQNGLIGITVSSIWAVPKFPTVASEKAAYRAI-DF-KFGWIFNPITYGSYPRSMQHLVGNRLPKFT 252 (402)
Q Consensus 175 ha~A~~~~r~~~~~~~~~~IGi~~~~~~~~P~~~~~~d~~aa~~~~-~~-~~~~f~dp~~~G~Yp~~~~~~l~~~~p~~~ 252 (402)
=. +++|+..|. .+|.+.+.. |.+ .....-.. .+ ..+.-.|.+..-.|| .
T Consensus 159 g~---~AVr~~~p~---~kV~lH~~~----~~~-----~~~~~~~f~~l~~~g~d~DviGlSyYP------------~-- 209 (332)
T PF07745_consen 159 GI---KAVREVDPN---IKVMLHLAN----GGD-----NDLYRWFFDNLKAAGVDFDVIGLSYYP------------F-- 209 (332)
T ss_dssp HH---HHHHTHSST---SEEEEEES-----TTS-----HHHHHHHHHHHHHTTGG-SEEEEEE-S------------T--
T ss_pred HH---HHHHhcCCC---CcEEEEECC----CCc-----hHHHHHHHHHHHhcCCCcceEEEecCC------------C--
Confidence 44 555556554 787766653 211 11100000 00 001112222222233 1
Q ss_pred cccccccCCCCeeechHHHHHHHHHHHHHcCCCCEEEeecCCCCCCCC-CCCC----------CCccCCHHHHHHHHHHH
Q 015710 253 KSQAEMTGSDWLSIYPKGIRELLLYLKKKYNPPPIYITENGVGDVNSS-SWPI----------SYALNDTVRVNYYNDHL 321 (402)
Q Consensus 253 ~~~~~~~~~~w~~i~P~gl~~~L~~~~~rY~~ppI~ITENG~~~~~~~-~~~~----------~~~i~D~~Ri~yl~~hl 321 (402)
|.-....|...|+.+.+||++| |+|+|+|++..... +... .....-.-..+||++-+
T Consensus 210 -----------w~~~l~~l~~~l~~l~~ry~K~-V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~ 277 (332)
T PF07745_consen 210 -----------WHGTLEDLKNNLNDLASRYGKP-VMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLI 277 (332)
T ss_dssp -----------TST-HHHHHHHHHHHHHHHT-E-EEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHH
T ss_pred -----------CcchHHHHHHHHHHHHHHhCCe-eEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHHHHH
Confidence 1224567999999999999986 99999998776211 0000 00111233555555544
Q ss_pred HHHHHHHHc-CCCCeEEEEEeecccc
Q 015710 322 SYILEAINS-GGVDVRGYFAWSFLDN 346 (402)
Q Consensus 322 ~~v~~Ai~~-dGv~v~GY~~WSl~Dn 346 (402)
+++.+ -|-...|+|+|----.
T Consensus 278 ----~~v~~~p~~~g~GvfYWeP~w~ 299 (332)
T PF07745_consen 278 ----NAVKNVPNGGGLGVFYWEPAWI 299 (332)
T ss_dssp ----HHHHTS--TTEEEEEEE-TT-G
T ss_pred ----HHHHHhccCCeEEEEeeccccc
Confidence 44442 1357999999965443
No 21
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=98.90 E-value=2.3e-08 Score=104.37 Aligned_cols=288 Identities=19% Similarity=0.258 Sum_probs=131.2
Q ss_pred hHHHHHHHH-HcCCCceeec--c--ccCcccc-cCCCCCC--CChhHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHh
Q 015710 21 YKEDIALVK-QVGFDSIRFS--I--SWSRILP-HGNISGG--VNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALED 92 (402)
Q Consensus 21 ~~eDi~l~~-~lG~~~~R~s--i--~W~ri~P-~~~~~g~--~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~ 92 (402)
+.+.+..++ ++|++.+||- + +..-..+ ++. |. +|+ .+.|+++|.|+++||+|+|.|.. +|.++..
T Consensus 41 ~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~--~~~~Ynf---~~lD~i~D~l~~~g~~P~vel~f--~p~~~~~ 113 (486)
T PF01229_consen 41 WQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDED--GIPPYNF---TYLDQILDFLLENGLKPFVELGF--MPMALAS 113 (486)
T ss_dssp HHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEETT--EEEEE-----HHHHHHHHHHHHCT-EEEEEE-S--B-GGGBS
T ss_pred HHHHHHHHHhccCceEEEEEeeccCchhhccccccC--CCCcCCh---HHHHHHHHHHHHcCCEEEEEEEe--chhhhcC
Confidence 555665554 9999999996 3 2222222 221 32 788 56799999999999999999974 6766542
Q ss_pred h------cCCC-CChhhHHHHHHHHHHHHHHh----CC-cce--EEEeecCCCcccccccccCccCCCCCCCCCCCCCCC
Q 015710 93 E------YGGF-LSPKIVKDFGDYADLCFKEF----GD-RVK--HWITLNEPETVGECGYAKGTKAPGRCSNYIGNCPAG 158 (402)
Q Consensus 93 ~------~gg~-~~~~~~~~f~~ya~~~~~~~----g~-~v~--~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~g 158 (402)
. +.|+ ..+...+.+.++++.+++|+ |. .|. +|.+||||++..+. ..|.
T Consensus 114 ~~~~~~~~~~~~~pp~~~~~W~~lv~~~~~h~~~RYG~~ev~~W~fEiWNEPd~~~f~-------~~~~----------- 175 (486)
T PF01229_consen 114 GYQTVFWYKGNISPPKDYEKWRDLVRAFARHYIDRYGIEEVSTWYFEIWNEPDLKDFW-------WDGT----------- 175 (486)
T ss_dssp S--EETTTTEE-S-BS-HHHHHHHHHHHHHHHHHHHHHHHHTTSEEEESS-TTSTTTS-------GGG------------
T ss_pred CCCccccccCCcCCcccHHHHHHHHHHHHHHHHhhcCCccccceeEEeCcCCCccccc-------CCCC-----------
Confidence 1 1122 23567788888877776655 42 355 67999999963221 1110
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHhcccCCCccEEEE-ecCCccccCCCCHHHHHHHHHHHhhh--ccccccccccCC
Q 015710 159 NSATEPYVAAHHLILSHATAVKLYRQNYQASQNGLIGIT-VSSIWAVPKFPTVASEKAAYRAIDFK--FGWIFNPITYGS 235 (402)
Q Consensus 159 ~~~~~~~~~~~nll~Aha~A~~~~r~~~~~~~~~~IGi~-~~~~~~~P~~~~~~d~~aa~~~~~~~--~~~f~dp~~~G~ 235 (402)
..-...+..+ +++++|+..|. .+||-- +.. ... + ......++. +.--+|-+....
T Consensus 176 ------~~ey~~ly~~---~~~~iK~~~p~---~~vGGp~~~~------~~~-~---~~~~~l~~~~~~~~~~DfiS~H~ 233 (486)
T PF01229_consen 176 ------PEEYFELYDA---TARAIKAVDPE---LKVGGPAFAW------AYD-E---WCEDFLEFCKGNNCPLDFISFHS 233 (486)
T ss_dssp ------HHHHHHHHHH---HHHHHHHH-TT---SEEEEEEEET------T-T-H---HHHHHHHHHHHCT---SEEEEEE
T ss_pred ------HHHHHHHHHH---HHHHHHHhCCC---CcccCccccc------cHH-H---HHHHHHHHHhcCCCCCCEEEEEe
Confidence 1113344443 55677777665 888843 110 100 1 011111111 112234333344
Q ss_pred CCHhHHHHhcccCCCCCcccccccCCCCeeechHHHHHHHHHHHHH-cCCCCEEEeecCCCCCCCCCCCCCCccCC-HHH
Q 015710 236 YPRSMQHLVGNRLPKFTKSQAEMTGSDWLSIYPKGIRELLLYLKKK-YNPPPIYITENGVGDVNSSSWPISYALND-TVR 313 (402)
Q Consensus 236 Yp~~~~~~l~~~~p~~~~~~~~~~~~~w~~i~P~gl~~~L~~~~~r-Y~~ppI~ITENG~~~~~~~~~~~~~~i~D-~~R 313 (402)
||.... ...+ ....... ... .-....+..+...+.+. ++..|+++||=+..... ...++| .++
T Consensus 234 y~~~~~----~~~~---~~~~~~~-~~~-~~~~~~~~~~~~~~~~e~~p~~~~~~tE~n~~~~~------~~~~~dt~~~ 298 (486)
T PF01229_consen 234 YGTDSA----EDIN---ENMYERI-EDS-RRLFPELKETRPIINDEADPNLPLYITEWNASISP------RNPQHDTCFK 298 (486)
T ss_dssp E-BESE----SE-S---S-EEEEB---H-HHHHHHHHHHHHHHHTSSSTT--EEEEEEES-SST------T-GGGGSHHH
T ss_pred cccccc----cccc---hhHHhhh-hhH-HHHHHHHHHHHHHHhhccCCCCceeecccccccCC------Ccchhccccc
Confidence 442100 0000 0000000 000 00111233332222222 33346999996554432 123444 345
Q ss_pred HHHHHHHHHHHHHHHHcCCCCeEEEEEeeccccccccCC----CcCceeeEEEcCCCCccccccchHHHHHHH
Q 015710 314 VNYYNDHLSYILEAINSGGVDVRGYFAWSFLDNYEWEYG----YTSRFGIIYVDYKDGLRRSLKNSALWFKKF 382 (402)
Q Consensus 314 i~yl~~hl~~v~~Ai~~dGv~v~GY~~WSl~Dn~eW~~g----~~~rfGL~~VD~~~~~~R~pK~S~~~y~~i 382 (402)
..|+... .++.+|..+-++.+|++.|.||=..- +.--|||+..+ .++|||++.|+=+
T Consensus 299 aA~i~k~------lL~~~~~~l~~~sywt~sD~Fee~~~~~~pf~ggfGLlt~~------gI~KPa~~A~~~L 359 (486)
T PF01229_consen 299 AAYIAKN------LLSNDGAFLDSFSYWTFSDRFEENGTPRKPFHGGFGLLTKL------GIPKPAYYAFQLL 359 (486)
T ss_dssp HHHHHH-------HHHHGGGT-SEEEES-SBS---TTSS-SSSSSS-S-SEECC------CEE-HHHHHHHHH
T ss_pred hhhHHHH------HHHhhhhhhhhhhccchhhhhhccCCCCCceecchhhhhcc------CCCchHHHHHHHH
Confidence 5555443 23323666777999999999983221 34458998654 4899999888754
No 22
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.64 E-value=7.1e-08 Score=102.67 Aligned_cols=119 Identities=19% Similarity=0.376 Sum_probs=95.7
Q ss_pred chHHHHHHHHHcCCCceeec-cccCcccccCCCCCCCChhHHHHHHHH-HHHHHHCCCeEEEEc-cCCCCchhhHhhc--
Q 015710 20 RYKEDIALVKQVGFDSIRFS-ISWSRILPHGNISGGVNQQGVDFYNNL-INELISNGLTPFVTL-FHWDTPQALEDEY-- 94 (402)
Q Consensus 20 ~~~eDi~l~~~lG~~~~R~s-i~W~ri~P~~~~~g~~n~~~~~~y~~~-i~~l~~~gi~p~vtL-~H~~~P~~l~~~~-- 94 (402)
-|++|++.||++|+|++|.+ ++|++++|+. |+||++ +.|.. ++.+.+.||..++.. .....|.||..++
T Consensus 31 ~w~ddl~~mk~~G~N~V~ig~faW~~~eP~e---G~fdf~---~~D~~~l~~a~~~Gl~vil~t~P~g~~P~Wl~~~~Pe 104 (673)
T COG1874 31 TWMDDLRKMKALGLNTVRIGYFAWNLHEPEE---GKFDFT---WLDEIFLERAYKAGLYVILRTGPTGAPPAWLAKKYPE 104 (673)
T ss_pred HHHHHHHHHHHhCCCeeEeeeEEeeccCccc---cccCcc---cchHHHHHHHHhcCceEEEecCCCCCCchHHhcCChh
Confidence 36778999999999999995 7999999998 999997 56666 999999999999998 7788999987753
Q ss_pred -------------CCCCChhhH-HHHHHHHHH----HHHH-hCC--cceEEEeecCCCc-ccccccccCccC
Q 015710 95 -------------GGFLSPKIV-KDFGDYADL----CFKE-FGD--RVKHWITLNEPET-VGECGYAKGTKA 144 (402)
Q Consensus 95 -------------gg~~~~~~~-~~f~~ya~~----~~~~-~g~--~v~~w~t~NEp~~-~~~~gy~~g~~~ 144 (402)
|+|.+-+.. ..|.+|++. +.+| ||+ .|-.|.+-||=.. .|++.+....|+
T Consensus 105 iL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~~v~~w~~dneY~~~~~~~~~~~~~f~ 176 (673)
T COG1874 105 ILAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERLYGNGPAVITWQNDNEYGGHPCYCDYCQAAFR 176 (673)
T ss_pred heEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHHhccCCceeEEEccCccCCccccccccHHHHH
Confidence 677654433 347777776 7788 776 4899999999776 666666555544
No 23
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=98.33 E-value=9.7e-06 Score=79.29 Aligned_cols=93 Identities=15% Similarity=0.177 Sum_probs=63.2
Q ss_pred hhhchHHHHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHhhcCC
Q 015710 17 FYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGG 96 (402)
Q Consensus 17 ~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg 96 (402)
....++.|+.+||++|+|++|++- .|.. .++++.|-+.||-++.-+.....-.|-. .|-
T Consensus 34 ~~~~~~~d~~l~k~~G~N~iR~~h-----~p~~--------------~~~~~~cD~~GilV~~e~~~~~~~~~~~--~~~ 92 (298)
T PF02836_consen 34 PDEAMERDLELMKEMGFNAIRTHH-----YPPS--------------PRFYDLCDELGILVWQEIPLEGHGSWQD--FGN 92 (298)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEETT-----S--S--------------HHHHHHHHHHT-EEEEE-S-BSCTSSSS--TSC
T ss_pred CHHHHHHHHHHHHhcCcceEEccc-----ccCc--------------HHHHHHHhhcCCEEEEeccccccCcccc--CCc
Confidence 467889999999999999999842 1222 4567788899999988774422222210 110
Q ss_pred ----CCChhhHHHHHHHHHHHHHHhCCc--ceEEEeecCC
Q 015710 97 ----FLSPKIVKDFGDYADLCFKEFGDR--VKHWITLNEP 130 (402)
Q Consensus 97 ----~~~~~~~~~f~~ya~~~~~~~g~~--v~~w~t~NEp 130 (402)
-.+++..+.+.+-++.+++++.++ |-.|.+.||+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~ 132 (298)
T PF02836_consen 93 CNYDADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES 132 (298)
T ss_dssp TSCTTTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS
T ss_pred cccCCCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC
Confidence 135778888888888999999875 8999999998
No 24
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=98.09 E-value=1.3e-05 Score=81.99 Aligned_cols=118 Identities=15% Similarity=0.207 Sum_probs=85.8
Q ss_pred chhhhch-----HHHHHHHHHcCCCceeeccccCcccccCCCC-CCCChhHHHHHHHHHHHHHHCCCeEEEEccCCCCch
Q 015710 15 DNFYFRY-----KEDIALVKQVGFDSIRFSISWSRILPHGNIS-GGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQ 88 (402)
Q Consensus 15 ~d~y~~~-----~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~-g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~ 88 (402)
.-....| ++|+..||+.|+|++|+.|.|..+.+..... ...+...+.+.+++|+..++.||.+++.||+..-+.
T Consensus 64 ~~~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~ 143 (407)
T COG2730 64 GLLESHWGNFITEEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGN 143 (407)
T ss_pred ccchhccchhhhhhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCC
Confidence 3345566 8999999999999999999966655542001 223244556899999999999999999999865222
Q ss_pred hhHhhc---CCCC-ChhhHHHHHHHHHHHHHHhCCc--ceEEEeecCCCc
Q 015710 89 ALEDEY---GGFL-SPKIVKDFGDYADLCFKEFGDR--VKHWITLNEPET 132 (402)
Q Consensus 89 ~l~~~~---gg~~-~~~~~~~f~~ya~~~~~~~g~~--v~~w~t~NEp~~ 132 (402)
--.+.. +.+. ..+.++.+.+-.+.++.+|++. |-...++|||+.
T Consensus 144 ~~~~~s~~~~~~~~~~~~~~~~~~~w~~ia~~f~~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 144 NGHEHSGYTSDYKEENENVEATIDIWKFIANRFKNYDTVIGFELINEPNG 193 (407)
T ss_pred CCcCcccccccccccchhHHHHHHHHHHHHHhccCCCceeeeeeecCCcc
Confidence 212211 2232 3557799999999999999973 666889999984
No 25
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=97.79 E-value=0.00011 Score=72.65 Aligned_cols=108 Identities=14% Similarity=0.150 Sum_probs=74.1
Q ss_pred chHHHHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEcc--------CCCCchhhH
Q 015710 20 RYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF--------HWDTPQALE 91 (402)
Q Consensus 20 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~--------H~~~P~~l~ 91 (402)
.|++-++.||++|+|++-+-+.|...||++ |+||+++..-.+++|+.++++||-+++-.- .-++|.||.
T Consensus 25 ~W~~~l~k~ka~G~n~v~~yv~W~~he~~~---g~~df~g~~dl~~f~~~a~~~gl~vilrpGpyi~aE~~~gG~P~Wl~ 101 (319)
T PF01301_consen 25 YWRDRLQKMKAAGLNTVSTYVPWNLHEPEE---GQFDFTGNRDLDRFLDLAQENGLYVILRPGPYICAEWDNGGLPAWLL 101 (319)
T ss_dssp GHHHHHHHHHHTT-SEEEEE--HHHHSSBT---TB---SGGG-HHHHHHHHHHTT-EEEEEEES---TTBGGGG--GGGG
T ss_pred HHHHHHHHHHhCCcceEEEeccccccCCCC---CcccccchhhHHHHHHHHHHcCcEEEecccceecccccchhhhhhhh
Confidence 477789999999999999999999999998 999999988899999999999999887532 135899998
Q ss_pred hhcCCC---CChhhHHHHHHHHHHHHHHhC-------CcceEEEeecCC
Q 015710 92 DEYGGF---LSPKIVKDFGDYADLCFKEFG-------DRVKHWITLNEP 130 (402)
Q Consensus 92 ~~~gg~---~~~~~~~~f~~ya~~~~~~~g-------~~v~~w~t~NEp 130 (402)
.+.+.. .++...+.-.+|.+.+++... .-|-.-++=||.
T Consensus 102 ~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQvENEy 150 (319)
T PF01301_consen 102 RKPDIRLRTNDPPFLEAVERWYRALAKIIKPLQYTNGGPIIMVQVENEY 150 (319)
T ss_dssp GSTTS-SSSS-HHHHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEESSSG
T ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHhhhhcCCCceehhhhhhhh
Confidence 753332 234566666666666666553 346778888884
No 26
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=97.63 E-value=0.028 Score=54.34 Aligned_cols=272 Identities=13% Similarity=0.214 Sum_probs=145.4
Q ss_pred HHH-HHHHHHcCCCceeeccccCcccccCC-CCCCCChhHHHHHHHHHHHHHHCCCeEEEEcc---CCCCchhhHhhcCC
Q 015710 22 KED-IALVKQVGFDSIRFSISWSRILPHGN-ISGGVNQQGVDFYNNLINELISNGLTPFVTLF---HWDTPQALEDEYGG 96 (402)
Q Consensus 22 ~eD-i~l~~~lG~~~~R~si~W~ri~P~~~-~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~---H~~~P~~l~~~~gg 96 (402)
++| ++.||+.|+|.+|+-|-=.----++. ..|-.| .++.--++-.+.+++||++++.+| ||.=|..- .+--.
T Consensus 65 ~qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnn--D~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ-~kPka 141 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNN--DLKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQ-KKPKA 141 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEEecCCccCCCCccCCCcc--hHHHHHHHHHHHHhcCcEEEeeccchhhccChhhc-CCcHH
Confidence 455 69999999999999762111111110 002222 134456778889999999999998 35556432 22145
Q ss_pred CCChh---hHHHHHHHHHHHHHHhC---CcceEEEeecCCCcccccccccCccCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 015710 97 FLSPK---IVKDFGDYADLCFKEFG---DRVKHWITLNEPETVGECGYAKGTKAPGRCSNYIGNCPAGNSATEPYVAAHH 170 (402)
Q Consensus 97 ~~~~~---~~~~f~~ya~~~~~~~g---~~v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~g~~~~~~~~~~~n 170 (402)
|.+-. .-.+--+|.+.+++.+. -...+-++=||-+ .|++ ||-|... -+.-+-.
T Consensus 142 W~~l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn----~gfl---wp~Ge~~--------------~f~k~a~ 200 (403)
T COG3867 142 WENLNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETN----GGFL---WPDGEGR--------------NFDKMAA 200 (403)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccC----Ccee---ccCCCCc--------------ChHHHHH
Confidence 75422 33444566666666664 4567788899977 2332 5655321 1222334
Q ss_pred HHHHHHHHHHHHHHhcccCCCccEEEEecCCccccCCCCHHHHHHHHHHHhhhccccccccccCCCCHhHHHHhcc-cCC
Q 015710 171 LILSHATAVKLYRQNYQASQNGLIGITVSSIWAVPKFPTVASEKAAYRAIDFKFGWIFNPITYGSYPRSMQHLVGN-RLP 249 (402)
Q Consensus 171 ll~Aha~A~~~~r~~~~~~~~~~IGi~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~f~dp~~~G~Yp~~~~~~l~~-~~p 249 (402)
|+.| +++++|+..|. .+|.+.+. .|.+.+. .+|+.|-+.+..-+- +.+|. ..|
T Consensus 201 L~n~---g~~avrev~p~---ikv~lHla----~g~~n~~-------------y~~~fd~ltk~nvdf---DVig~SyYp 254 (403)
T COG3867 201 LLNA---GIRAVREVSPT---IKVALHLA----EGENNSL-------------YRWIFDELTKRNVDF---DVIGSSYYP 254 (403)
T ss_pred HHHH---HhhhhhhcCCC---ceEEEEec----CCCCCch-------------hhHHHHHHHHcCCCc---eEEeeeccc
Confidence 4443 45667776553 66555443 2443321 234444333221110 01111 112
Q ss_pred CCCcccccccCCCCeeechHHHHHHHHHHHHHcCCCCEEEeecCCCCCCCC-----------CCCCCCccCCHHHHHHHH
Q 015710 250 KFTKSQAEMTGSDWLSIYPKGIRELLLYLKKKYNPPPIYITENGVGDVNSS-----------SWPISYALNDTVRVNYYN 318 (402)
Q Consensus 250 ~~~~~~~~~~~~~w~~i~P~gl~~~L~~~~~rY~~ppI~ITENG~~~~~~~-----------~~~~~~~i~D~~Ri~yl~ 318 (402)
. |.-.-..|...|..+.+||++. +||.|.+....-++ ..+..-.+.=+-+..+++
T Consensus 255 y-------------Whgtl~nL~~nl~dia~rY~K~-VmV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vr 320 (403)
T COG3867 255 Y-------------WHGTLNNLTTNLNDIASRYHKD-VMVVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQGQATFVR 320 (403)
T ss_pred c-------------ccCcHHHHHhHHHHHHHHhcCe-EEEEEecceeeeccCCCCCCcCCcccccCCCceEEechhhHHH
Confidence 1 2223346888999999999885 99999887432211 001011111134566787
Q ss_pred HHHHHHHHHHHcCCCCeEEEEEeecccccc-ccCCCcCceeeE
Q 015710 319 DHLSYILEAINSGGVDVRGYFAWSFLDNYE-WEYGYTSRFGII 360 (402)
Q Consensus 319 ~hl~~v~~Ai~~dGv~v~GY~~WSl~Dn~e-W~~g~~~rfGL~ 360 (402)
+-++.|..- - +.+=.|.|+|---=+.- -.+|+...||.-
T Consensus 321 Dvie~V~nv--p-~~~GlGvFYWEp~wipv~~g~gwat~~~~~ 360 (403)
T COG3867 321 DVIEAVKNV--P-KSNGLGVFYWEPAWIPVVLGSGWATSYAAK 360 (403)
T ss_pred HHHHHHHhC--C-CCCceEEEEecccceeccCCCccccchhhc
Confidence 777766543 1 45578999996432222 223444444443
No 27
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=97.58 E-value=0.0025 Score=63.97 Aligned_cols=102 Identities=22% Similarity=0.282 Sum_probs=56.5
Q ss_pred HHcCCCceeecc---cc------------CcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHhh
Q 015710 29 KQVGFDSIRFSI---SW------------SRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDE 93 (402)
Q Consensus 29 ~~lG~~~~R~si---~W------------~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~ 93 (402)
+-+|++.+|+.| ++ .|.+--...+|.+|+.+=+-=+.++++++++|++.++ ++-+..|.||...
T Consensus 57 ~GlGLSI~RyNIGgGs~~~~d~~~i~~~~rr~e~f~~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f~-aFSNSPP~~MT~N 135 (384)
T PF14587_consen 57 KGLGLSIWRYNIGGGSAEQGDSSGIRDPWRRAESFLPADGSYDWDADAGQRWFLKAAKERGVNIFE-AFSNSPPWWMTKN 135 (384)
T ss_dssp -S---S-EEEE---STTTTTTSS--SSSTT----SB-TTS-B-TTSSHHHHHHHHHHHHTT---EE-EE-SSS-GGGSSS
T ss_pred CCceeeeeeeccccCCcccccCccCCCcccCCccccCCCCCcCCCCCHHHHHHHHHHHHcCCCeEE-EeecCCCHHHhcC
Confidence 349999999987 33 3332111113778876544456689999999999876 5567888887542
Q ss_pred cC----C-----CCChhhHHHHHHHHHHHHHHhCC---cceEEEeecCCCc
Q 015710 94 YG----G-----FLSPKIVKDFGDYADLCFKEFGD---RVKHWITLNEPET 132 (402)
Q Consensus 94 ~g----g-----~~~~~~~~~f~~ya~~~~~~~g~---~v~~w~t~NEp~~ 132 (402)
| + =+.++..+.|+.|...|+++|.. .+++-.++|||..
T Consensus 136 -G~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NEP~~ 185 (384)
T PF14587_consen 136 -GSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKWGINFDYISPFNEPQW 185 (384)
T ss_dssp -SSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-TTS
T ss_pred -CCCCCCCccccccChhHHHHHHHHHHHHHHHHHhcCCccceeCCcCCCCC
Confidence 2 1 14577899999999999999933 5899999999993
No 28
>PLN03059 beta-galactosidase; Provisional
Probab=97.54 E-value=0.0011 Score=72.50 Aligned_cols=108 Identities=16% Similarity=0.113 Sum_probs=86.6
Q ss_pred hchHHHHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEcc--------CCCCchhh
Q 015710 19 FRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF--------HWDTPQAL 90 (402)
Q Consensus 19 ~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~--------H~~~P~~l 90 (402)
..|++=++.||++|+|++-.=+.|..-||.+ |+||++|..=..++|+.+.+.||-+|+-.- .-++|.||
T Consensus 59 ~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~---G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL 135 (840)
T PLN03059 59 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPSP---GNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWL 135 (840)
T ss_pred HHHHHHHHHHHHcCCCeEEEEecccccCCCC---CeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhh
Confidence 3577779999999999999999999999998 999999999999999999999999888542 35789999
Q ss_pred HhhcCCC----CChhhHHHHHHHHHHHHHHh---------CCcceEEEeecCC
Q 015710 91 EDEYGGF----LSPKIVKDFGDYADLCFKEF---------GDRVKHWITLNEP 130 (402)
Q Consensus 91 ~~~~gg~----~~~~~~~~f~~ya~~~~~~~---------g~~v~~w~t~NEp 130 (402)
... .|- .++.+.++-.+|.+.++..+ |+-|-..++=||-
T Consensus 136 ~~~-~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEY 187 (840)
T PLN03059 136 KYV-PGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEY 187 (840)
T ss_pred hcC-CCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEecccc
Confidence 753 342 24556666777777777766 3346777888884
No 29
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=97.34 E-value=0.028 Score=64.04 Aligned_cols=90 Identities=20% Similarity=0.174 Sum_probs=63.1
Q ss_pred hhhchHHHHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEcc---C-CCCchhhHh
Q 015710 17 FYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF---H-WDTPQALED 92 (402)
Q Consensus 17 ~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~---H-~~~P~~l~~ 92 (402)
....+++|+++||++|+|++|+| ..|.. ..+.+.|-+.||=++--.. | |.....+
T Consensus 353 ~~e~~~~dl~lmK~~g~NavR~s-----HyP~~--------------~~fydlcDe~GllV~dE~~~e~~g~~~~~~~-- 411 (1021)
T PRK10340 353 GMDRVEKDIQLMKQHNINSVRTA-----HYPND--------------PRFYELCDIYGLFVMAETDVESHGFANVGDI-- 411 (1021)
T ss_pred CHHHHHHHHHHHHHCCCCEEEec-----CCCCC--------------HHHHHHHHHCCCEEEECCcccccCccccccc--
Confidence 35678999999999999999996 24443 3567788899998776541 1 1111000
Q ss_pred hcCCC--CChhhHHHHHHHHHHHHHHhCCc--ceEEEeecCC
Q 015710 93 EYGGF--LSPKIVKDFGDYADLCFKEFGDR--VKHWITLNEP 130 (402)
Q Consensus 93 ~~gg~--~~~~~~~~f~~ya~~~~~~~g~~--v~~w~t~NEp 130 (402)
.+ .++...+.|.+=++.+++|.+++ |-.|..-||.
T Consensus 412 ---~~~~~~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~ 450 (1021)
T PRK10340 412 ---SRITDDPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNES 450 (1021)
T ss_pred ---ccccCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCc
Confidence 01 23445667777788899999876 8899999995
No 30
>PLN00197 beta-amylase; Provisional
Probab=96.88 E-value=0.011 Score=61.41 Aligned_cols=108 Identities=19% Similarity=0.234 Sum_probs=82.6
Q ss_pred hhchHHHHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCC------------C
Q 015710 18 YFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHW------------D 85 (402)
Q Consensus 18 y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~------------~ 85 (402)
-...+..++.||.+|+..+-+.+-|.-+|+.+. ++|||+ .|.++++.+++.|++..+.|.-. -
T Consensus 126 ~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p--~~YdWs---gY~~L~~mvr~~GLKlq~VmSFHqCGGNVGD~~~Ip 200 (573)
T PLN00197 126 RKAMKASLQALKSAGVEGIMMDVWWGLVERESP--GVYNWG---GYNELLEMAKRHGLKVQAVMSFHQCGGNVGDSCTIP 200 (573)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCC--CcCCcH---HHHHHHHHHHHcCCeEEEEEEecccCCCCCCccccc
Confidence 334788899999999999999999999999873 999995 59999999999999988877533 4
Q ss_pred CchhhHhh-----------cCC----------------CCChhhHHHHHHHHHHHHHHhCCcceEEEeecCCCc
Q 015710 86 TPQALEDE-----------YGG----------------FLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPET 132 (402)
Q Consensus 86 ~P~~l~~~-----------~gg----------------~~~~~~~~~f~~ya~~~~~~~g~~v~~w~t~NEp~~ 132 (402)
+|.|+.+. ..| +..+.-++.|.+|-+..-+.|.+... -||.|..+
T Consensus 201 LP~WV~~~g~~dpDifftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~--~~I~eI~V 272 (573)
T PLN00197 201 LPKWVVEEVDKDPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRAFRDNFKHLLG--DTIVEIQV 272 (573)
T ss_pred CCHHHHHhhccCCCceeecCCCCcccceeccccccccccCCCCHHHHHHHHHHHHHHHHHHHhc--CceeEEEe
Confidence 89997652 012 11223368888888888888777554 36666553
No 31
>PLN02803 beta-amylase
Probab=96.61 E-value=0.0078 Score=62.35 Aligned_cols=107 Identities=16% Similarity=0.245 Sum_probs=81.2
Q ss_pred hchHHHHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCC------------CC
Q 015710 19 FRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHW------------DT 86 (402)
Q Consensus 19 ~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~------------~~ 86 (402)
...+..++.||.+|+..+-+.+-|--+|+.+. ++|||+ .|.++++.+++.||+..+.|.-. -+
T Consensus 107 ~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p--~~YdWs---gY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpL 181 (548)
T PLN02803 107 RAMNASLMALRSAGVEGVMVDAWWGLVEKDGP--MKYNWE---GYAELVQMVQKHGLKLQVVMSFHQCGGNVGDSCSIPL 181 (548)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeeeeeeccCCC--CcCCcH---HHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccC
Confidence 44677899999999999999999999999873 999995 59999999999999988877533 48
Q ss_pred chhhHhh-----------cCC----------------CCChhhHHHHHHHHHHHHHHhCCcceEEEeecCCCc
Q 015710 87 PQALEDE-----------YGG----------------FLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPET 132 (402)
Q Consensus 87 P~~l~~~-----------~gg----------------~~~~~~~~~f~~ya~~~~~~~g~~v~~w~t~NEp~~ 132 (402)
|.|+.+. ..| +..+.-++.|.+|-+..-+.|.+... -||.|..+
T Consensus 182 P~WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l~--~~I~eI~V 252 (548)
T PLN02803 182 PPWVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRERFKDYLG--GVIAEIQV 252 (548)
T ss_pred CHHHHHhhhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHHHHHHHHhc--CceEEEEe
Confidence 9997652 012 12233457788888888777766543 46666543
No 32
>PLN02161 beta-amylase
Probab=96.57 E-value=0.012 Score=60.79 Aligned_cols=111 Identities=15% Similarity=0.191 Sum_probs=84.7
Q ss_pred chhhhchHHHHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCC----------
Q 015710 15 DNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHW---------- 84 (402)
Q Consensus 15 ~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~---------- 84 (402)
..+....+..++.||.+|+..+-+.+-|--+|+.+. ++||++ .|+++++.+++.||+..+.|.-.
T Consensus 113 v~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p--~~YdWs---gY~~l~~mvr~~GLKlq~vmSFHqCGGNvGd~~ 187 (531)
T PLN02161 113 IKRLKALTVSLKALKLAGVHGIAVEVWWGIVERFSP--LEFKWS---LYEELFRLISEAGLKLHVALCFHSNMHLFGGKG 187 (531)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCC--CcCCcH---HHHHHHHHHHHcCCeEEEEEEecccCCCCCCcc
Confidence 466777888999999999999999999999999873 999995 59999999999999988877533
Q ss_pred --CCchhhHhh-----------cCC----------------CCChhhHHHHHHHHHHHHHHhCCcceEEEeecCCCc
Q 015710 85 --DTPQALEDE-----------YGG----------------FLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPET 132 (402)
Q Consensus 85 --~~P~~l~~~-----------~gg----------------~~~~~~~~~f~~ya~~~~~~~g~~v~~w~t~NEp~~ 132 (402)
-+|.|+.+. ..| +..+.-++.|.+|-+...+.|.+... -||.|..+
T Consensus 188 ~IpLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~~~--~~I~eI~V 262 (531)
T PLN02161 188 GISLPLWIREIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFMLSFSTKFEPYIG--NVIEEISI 262 (531)
T ss_pred CccCCHHHHhhhccCCCceEEcCCCCcccceeeeecccchhcCCCCHHHHHHHHHHHHHHHHHHHhc--CceEEEEe
Confidence 389997752 012 12233457888888888888776543 36666443
No 33
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=96.54 E-value=0.007 Score=61.08 Aligned_cols=106 Identities=18% Similarity=0.301 Sum_probs=78.9
Q ss_pred hhchHHHHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEcc-C-----------CC
Q 015710 18 YFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF-H-----------WD 85 (402)
Q Consensus 18 y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~-H-----------~~ 85 (402)
++..+..++.||++|+..+-+.+-|..+|+.+. ++||++ .|+++++.+++.|++..+.|. | .-
T Consensus 15 ~~~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p--~~ydWs---~Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~Ip 89 (402)
T PF01373_consen 15 WNALEAQLRALKSAGVDGVMVDVWWGIVEGEGP--QQYDWS---GYRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIP 89 (402)
T ss_dssp CHHHHHHHHHHHHTTEEEEEEEEEHHHHTGSST--TB---H---HHHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-
T ss_pred HHHHHHHHHHHHHcCCcEEEEEeEeeeeccCCC--CccCcH---HHHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCc
Confidence 447889999999999999999999999999863 999995 599999999999999988763 3 35
Q ss_pred CchhhHhh-----------cCC--------CCChhhHHHHHHHHHHHHHHhCCcceEEEeecCCC
Q 015710 86 TPQALEDE-----------YGG--------FLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPE 131 (402)
Q Consensus 86 ~P~~l~~~-----------~gg--------~~~~~~~~~f~~ya~~~~~~~g~~v~~w~t~NEp~ 131 (402)
+|.|+.+. .|. |....+++.|.+|-+...++|.+.. -||-|..
T Consensus 90 LP~Wv~~~~~~~di~ytd~~G~rn~E~lSp~~~grt~~~Y~dfm~sF~~~f~~~~---~~I~~I~ 151 (402)
T PF01373_consen 90 LPSWVWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRTLQCYSDFMRSFRDNFSDYL---STITEIQ 151 (402)
T ss_dssp S-HHHHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBCHHHHHHHHHHHHHHCHHHH---TGEEEEE
T ss_pred CCHHHHhccccCCcEEECCCCCcCcceeecccCCchHHHHHHHHHHHHHHHHHHH---hhheEEE
Confidence 79998652 122 4444449999999999999987654 4555543
No 34
>PLN02801 beta-amylase
Probab=96.44 E-value=0.017 Score=59.67 Aligned_cols=100 Identities=18% Similarity=0.254 Sum_probs=77.7
Q ss_pred hhhchHHHHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCC------------
Q 015710 17 FYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHW------------ 84 (402)
Q Consensus 17 ~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~------------ 84 (402)
+-...+..+..||++|+..+-+.+-|.-+|+.+. ++||++ .|+++++.+++.|++..+.|.-.
T Consensus 35 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P--~~YdWs---gY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~I 109 (517)
T PLN02801 35 DEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGP--KQYDWS---AYRSLFELVQSFGLKIQAIMSFHQCGGNVGDAVNI 109 (517)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCC--CccCcH---HHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccc
Confidence 3445788899999999999999999999999873 999995 59999999999999987776532
Q ss_pred CCchhhHhh-----------cCC---------------C-CChhhHHHHHHHHHHHHHHhCCcc
Q 015710 85 DTPQALEDE-----------YGG---------------F-LSPKIVKDFGDYADLCFKEFGDRV 121 (402)
Q Consensus 85 ~~P~~l~~~-----------~gg---------------~-~~~~~~~~f~~ya~~~~~~~g~~v 121 (402)
-+|.|+.+. ..| + ..+.-++.|.+|-+...++|.+..
T Consensus 110 pLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l 173 (517)
T PLN02801 110 PIPQWVRDVGDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFRENMADFL 173 (517)
T ss_pred cCCHHHHHhhccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 489997752 012 1 223346888888888888886643
No 35
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=96.36 E-value=0.027 Score=55.05 Aligned_cols=101 Identities=16% Similarity=0.244 Sum_probs=61.3
Q ss_pred HHHHHHcCCCceeecc--ccCcc-----cccCCC----C-----CCCChhHHHHHHHHHHHHHHCCCeEEEEccCCCCch
Q 015710 25 IALVKQVGFDSIRFSI--SWSRI-----LPHGNI----S-----GGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQ 88 (402)
Q Consensus 25 i~l~~~lG~~~~R~si--~W~ri-----~P~~~~----~-----g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~ 88 (402)
++..|+-|+|.+|+.+ .|... .|.... . ..+|++=.++.+++|+.|.++||+|.+.+.| +.|.
T Consensus 36 L~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~w-g~~~ 114 (289)
T PF13204_consen 36 LDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAYFDHLDRRIEKANELGIEAALVPFW-GCPY 114 (289)
T ss_dssp HHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----HHHHHHHHHHHHHHTT-EEEEESS--HHHH
T ss_pred HHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEEE-CCcc
Confidence 7889999999999996 34433 111100 0 1378888999999999999999999877765 2222
Q ss_pred hhHhhcCCCCC---hhhHHHHHHHHHHHHHHhCCc-ceEEEeecCC
Q 015710 89 ALEDEYGGFLS---PKIVKDFGDYADLCFKEFGDR-VKHWITLNEP 130 (402)
Q Consensus 89 ~l~~~~gg~~~---~~~~~~f~~ya~~~~~~~g~~-v~~w~t~NEp 130 (402)
.+ |.|-. .-..+.-.+|.+.|++||+.. =..|++-||-
T Consensus 115 ---~~-~~Wg~~~~~m~~e~~~~Y~~yv~~Ry~~~~NviW~l~gd~ 156 (289)
T PF13204_consen 115 ---VP-GTWGFGPNIMPPENAERYGRYVVARYGAYPNVIWILGGDY 156 (289)
T ss_dssp ---H--------TTSS-HHHHHHHHHHHHHHHTT-SSEEEEEESSS
T ss_pred ---cc-ccccccccCCCHHHHHHHHHHHHHHHhcCCCCEEEecCcc
Confidence 11 44532 223677779999999999997 4779998884
No 36
>PLN02905 beta-amylase
Probab=96.29 E-value=0.023 Score=59.80 Aligned_cols=101 Identities=15% Similarity=0.140 Sum_probs=78.4
Q ss_pred chhhhchHHHHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCC----------
Q 015710 15 DNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHW---------- 84 (402)
Q Consensus 15 ~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~---------- 84 (402)
-.+....+..+..||.+|+..+-+.+-|--+|+.+. ++|||+ .|.++++.+++.||+..+.|.-.
T Consensus 282 l~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP--~~YdWs---gY~~L~~mvr~~GLKlqvVMSFHqCGGNVGD~~ 356 (702)
T PLN02905 282 LADPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAP--QEYNWN---GYKRLFQMVRELKLKLQVVMSFHECGGNVGDDV 356 (702)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCC--CcCCcH---HHHHHHHHHHHcCCeEEEEEEecccCCCCCCcc
Confidence 456667888999999999999999999999999873 999995 59999999999999988877533
Q ss_pred --CCchhhHhh-----------cCCC----------------CChhhHHHHHHHHHHHHHHhCCc
Q 015710 85 --DTPQALEDE-----------YGGF----------------LSPKIVKDFGDYADLCFKEFGDR 120 (402)
Q Consensus 85 --~~P~~l~~~-----------~gg~----------------~~~~~~~~f~~ya~~~~~~~g~~ 120 (402)
-+|.|+.+. ..|. ..+.-++.|.+|.+...+.|.+.
T Consensus 357 ~IPLP~WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~f 421 (702)
T PLN02905 357 CIPLPHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFDEF 421 (702)
T ss_pred cccCCHHHHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 489997652 0121 12334578888887777777653
No 37
>PLN02705 beta-amylase
Probab=96.18 E-value=0.02 Score=60.19 Aligned_cols=99 Identities=15% Similarity=0.108 Sum_probs=76.8
Q ss_pred hhhchHHHHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCC------------
Q 015710 17 FYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHW------------ 84 (402)
Q Consensus 17 ~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~------------ 84 (402)
+-.-.+..+..||.+|+..+-+.+-|-.+|+.+. ++|||+ .|.++++.+++.||+..+.|.-.
T Consensus 266 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P--~~YdWs---gY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~I 340 (681)
T PLN02705 266 DPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNP--QKYVWS---GYRELFNIIREFKLKLQVVMAFHEYGGNASGNVMI 340 (681)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCC--CcCCcH---HHHHHHHHHHHcCCeEEEEEEeeccCCCCCCcccc
Confidence 4455788899999999999999999999999873 999995 59999999999999988776532
Q ss_pred CCchhhHhh-----------cCCC----------------CChhhHHHHHHHHHHHHHHhCCc
Q 015710 85 DTPQALEDE-----------YGGF----------------LSPKIVKDFGDYADLCFKEFGDR 120 (402)
Q Consensus 85 ~~P~~l~~~-----------~gg~----------------~~~~~~~~f~~ya~~~~~~~g~~ 120 (402)
-+|.|+.+. ..|. ..+.-++.|.+|.+..-+.|.+.
T Consensus 341 PLP~WV~e~g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~f 403 (681)
T PLN02705 341 SLPQWVLEIGKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFDDL 403 (681)
T ss_pred cCCHHHHHhcccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 489997752 0121 12334588888888877777653
No 38
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=96.00 E-value=0.095 Score=46.98 Aligned_cols=104 Identities=19% Similarity=0.387 Sum_probs=67.5
Q ss_pred hchHHHHHHHHHcCCCceeeccccCccc-----ccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHhh
Q 015710 19 FRYKEDIALVKQVGFDSIRFSISWSRIL-----PHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDE 93 (402)
Q Consensus 19 ~~~~eDi~l~~~lG~~~~R~si~W~ri~-----P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~ 93 (402)
.+|+++++.|+++|++++=+- |+... |.....+.+.....+..+.+++++.+.||++++.|+. -|.|...
T Consensus 20 ~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~--~~~~w~~- 94 (166)
T PF14488_consen 20 AQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYF--DPDYWDQ- 94 (166)
T ss_pred HHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCC--Cchhhhc-
Confidence 368999999999999987433 44432 2210002233344577999999999999999999974 4555542
Q ss_pred cCCCCChh-hHHHHHHHHHHHHHHhCCc--ceEEEeecCCC
Q 015710 94 YGGFLSPK-IVKDFGDYADLCFKEFGDR--VKHWITLNEPE 131 (402)
Q Consensus 94 ~gg~~~~~-~~~~f~~ya~~~~~~~g~~--v~~w~t~NEp~ 131 (402)
.+.+ -++.=..-++.+.++||.+ +..|-+-.|+.
T Consensus 95 ----~~~~~~~~~~~~v~~el~~~yg~h~sf~GWYip~E~~ 131 (166)
T PF14488_consen 95 ----GDLDWEAERNKQVADELWQRYGHHPSFYGWYIPYEID 131 (166)
T ss_pred ----cCHHHHHHHHHHHHHHHHHHHcCCCCCceEEEecccC
Confidence 1211 2333344667778888874 66676666654
No 39
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=95.56 E-value=0.098 Score=55.60 Aligned_cols=109 Identities=17% Similarity=0.138 Sum_probs=86.7
Q ss_pred chHHHHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEcc--------CCCCchhhH
Q 015710 20 RYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF--------HWDTPQALE 91 (402)
Q Consensus 20 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~--------H~~~P~~l~ 91 (402)
.|++=|+.+|++|+|++-.=+.|.-.||.+ |++|++|.-=..++|..+.++|+-+++-+- +-++|.||.
T Consensus 50 ~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~---g~y~FsG~~DlvkFikl~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~ 126 (649)
T KOG0496|consen 50 MWPDLIKKAKAGGLNVIQTYVFWNLHEPSP---GKYDFSGRYDLVKFIKLIHKAGLYVILRIGPYICAEWNFGGLPWWLR 126 (649)
T ss_pred hhHHHHHHHHhcCCceeeeeeecccccCCC---CcccccchhHHHHHHHHHHHCCeEEEecCCCeEEecccCCCcchhhh
Confidence 467779999999999999999999999998 999999987788899999999988776542 567798887
Q ss_pred hhcCC-C--CChhhHHHHHHHHHHHHHHh-------CCcceEEEeecCCC
Q 015710 92 DEYGG-F--LSPKIVKDFGDYADLCFKEF-------GDRVKHWITLNEPE 131 (402)
Q Consensus 92 ~~~gg-~--~~~~~~~~f~~ya~~~~~~~-------g~~v~~w~t~NEp~ 131 (402)
..-|. + .|+.+-.+..+|.+.++... |+-|-.-++=||=.
T Consensus 127 ~~pg~~~Rt~nepfk~~~~~~~~~iv~~mk~L~~~qGGPIIl~QIENEYG 176 (649)
T KOG0496|consen 127 NVPGIVFRTDNEPFKAEMERWTTKIVPMMKKLFASQGGPIILVQIENEYG 176 (649)
T ss_pred hCCceEEecCChHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEeechhh
Confidence 64232 2 46778889999999988743 33366667777744
No 40
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=95.38 E-value=0.068 Score=50.71 Aligned_cols=69 Identities=22% Similarity=0.386 Sum_probs=49.2
Q ss_pred chHHHHHHHHHHHHHcCCCCEEEeecCCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeecccc
Q 015710 267 YPKGIRELLLYLKKKYNPPPIYITENGVGDVNSSSWPISYALNDTVRVNYYNDHLSYILEAINSGGVDVRGYFAWSFLDN 346 (402)
Q Consensus 267 ~P~gl~~~L~~~~~rY~~ppI~ITENG~~~~~~~~~~~~~~i~D~~Ri~yl~~hl~~v~~Ai~~dGv~v~GY~~WSl~Dn 346 (402)
.+.++...|..++++|++| |.|||-|+..... .-+++....|+++-+..+ +. --.|.+|++.+.++.
T Consensus 149 ~~~~~~~~i~~~~~~~~kP-IWITEf~~~~~~~-------~~~~~~~~~fl~~~~~~l----d~-~~~VeryawF~~~~~ 215 (239)
T PF11790_consen 149 DADDFKDYIDDLHNRYGKP-IWITEFGCWNGGS-------QGSDEQQASFLRQALPWL----DS-QPYVERYAWFGFMND 215 (239)
T ss_pred CHHHHHHHHHHHHHHhCCC-EEEEeecccCCCC-------CCCHHHHHHHHHHHHHHH----hc-CCCeeEEEecccccc
Confidence 4678999999999999976 9999999865211 223556666766666554 33 356999999995554
Q ss_pred cc
Q 015710 347 YE 348 (402)
Q Consensus 347 ~e 348 (402)
.+
T Consensus 216 ~~ 217 (239)
T PF11790_consen 216 GS 217 (239)
T ss_pred cC
Confidence 44
No 41
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=94.64 E-value=0.16 Score=58.00 Aligned_cols=93 Identities=16% Similarity=0.056 Sum_probs=64.0
Q ss_pred hhhchHHHHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHhhcCC
Q 015710 17 FYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGG 96 (402)
Q Consensus 17 ~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg 96 (402)
....+++||++||++|+|++|+| ..|.. .++.+.|-+.||=++--..-..+..+... -.
T Consensus 369 t~e~~~~di~lmK~~g~NaVR~s-----HyP~~--------------p~fydlcDe~GilV~dE~~~e~hg~~~~~--~~ 427 (1027)
T PRK09525 369 DEETMVQDILLMKQHNFNAVRCS-----HYPNH--------------PLWYELCDRYGLYVVDEANIETHGMVPMN--RL 427 (1027)
T ss_pred CHHHHHHHHHHHHHCCCCEEEec-----CCCCC--------------HHHHHHHHHcCCEEEEecCccccCCcccc--CC
Confidence 56678999999999999999995 23332 34567888999988766421111110000 01
Q ss_pred CCChhhHHHHHHHHHHHHHHhCCc--ceEEEeecCC
Q 015710 97 FLSPKIVKDFGDYADLCFKEFGDR--VKHWITLNEP 130 (402)
Q Consensus 97 ~~~~~~~~~f~~ya~~~~~~~g~~--v~~w~t~NEp 130 (402)
..+++..+.+.+=++.+++|.+++ |-.|...||+
T Consensus 428 ~~dp~~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~ 463 (1027)
T PRK09525 428 SDDPRWLPAMSERVTRMVQRDRNHPSIIIWSLGNES 463 (1027)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCCEEEEEeCccCC
Confidence 134666777777788899999876 8899999996
No 42
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=92.05 E-value=1 Score=50.09 Aligned_cols=90 Identities=17% Similarity=0.134 Sum_probs=66.0
Q ss_pred chhhhchHHHHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHhhc
Q 015710 15 DNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEY 94 (402)
Q Consensus 15 ~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ 94 (402)
+-.+..+.+|+++||++|+|++|.| -.|.. ..+.+.|-+.||=++=-..+ +- +
T Consensus 317 ~~~~~~~~~dl~lmk~~n~N~vRts-----HyP~~--------------~~~ydLcDelGllV~~Ea~~-----~~---~ 369 (808)
T COG3250 317 VTDEDAMERDLKLMKEANMNSVRTS-----HYPNS--------------EEFYDLCDELGLLVIDEAMI-----ET---H 369 (808)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEec-----CCCCC--------------HHHHHHHHHhCcEEEEecch-----hh---c
Confidence 4445668999999999999999998 44543 45667788889988765532 11 1
Q ss_pred CCCCChhhHHHHHHHHHHHHHHhCCc--ceEEEeecCCC
Q 015710 95 GGFLSPKIVKDFGDYADLCFKEFGDR--VKHWITLNEPE 131 (402)
Q Consensus 95 gg~~~~~~~~~f~~ya~~~~~~~g~~--v~~w~t~NEp~ 131 (402)
|+...++..+...+=++.+++|-+++ |-.|..=||..
T Consensus 370 ~~~~~~~~~k~~~~~i~~mver~knHPSIiiWs~gNE~~ 408 (808)
T COG3250 370 GMPDDPEWRKEVSEEVRRMVERDRNHPSIIIWSLGNESG 408 (808)
T ss_pred CCCCCcchhHHHHHHHHHHHHhccCCCcEEEEecccccc
Confidence 33345566666777788889998874 89999999965
No 43
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=91.73 E-value=0.81 Score=44.96 Aligned_cols=91 Identities=21% Similarity=0.262 Sum_probs=53.9
Q ss_pred hchHHHHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHhhcCCCC
Q 015710 19 FRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFL 98 (402)
Q Consensus 19 ~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~ 98 (402)
+..+.|+.+||+||+|++|+= -|-|+. =.++....|.++||=+++.|. .|.---++...|.
T Consensus 53 ~~C~rDi~~l~~LgiNtIRVY----~vdp~~------------nHd~CM~~~~~aGIYvi~Dl~---~p~~sI~r~~P~~ 113 (314)
T PF03198_consen 53 EACKRDIPLLKELGINTIRVY----SVDPSK------------NHDECMSAFADAGIYVILDLN---TPNGSINRSDPAP 113 (314)
T ss_dssp HHHHHHHHHHHHHT-SEEEES-------TTS--------------HHHHHHHHHTT-EEEEES----BTTBS--TTS---
T ss_pred HHHHHhHHHHHHcCCCEEEEE----EeCCCC------------CHHHHHHHHHhCCCEEEEecC---CCCccccCCCCcC
Confidence 478999999999999999984 233343 258889999999999999994 4521111111111
Q ss_pred ChhhHHHHHHHHHHHHHHhC--CcceEEEeecCC
Q 015710 99 SPKIVKDFGDYADLCFKEFG--DRVKHWITLNEP 130 (402)
Q Consensus 99 ~~~~~~~f~~ya~~~~~~~g--~~v~~w~t~NEp 130 (402)
. =....|.+|.+.| +.|. +.|-.+..=||-
T Consensus 114 s-w~~~l~~~~~~vi-d~fa~Y~N~LgFf~GNEV 145 (314)
T PF03198_consen 114 S-WNTDLLDRYFAVI-DAFAKYDNTLGFFAGNEV 145 (314)
T ss_dssp ----HHHHHHHHHHH-HHHTT-TTEEEEEEEESS
T ss_pred C-CCHHHHHHHHHHH-HHhccCCceEEEEeccee
Confidence 0 0245666666554 4444 457777777774
No 44
>COG3664 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=89.89 E-value=0.44 Score=48.14 Aligned_cols=100 Identities=13% Similarity=0.196 Sum_probs=70.1
Q ss_pred HHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHhhcCCC-CC-hhhHH
Q 015710 27 LVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGF-LS-PKIVK 104 (402)
Q Consensus 27 l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~-~~-~~~~~ 104 (402)
.-+|+|++.+|.---|.-++... -+++ .+++++++.+...|+.-+.+-.||+.+.-....+-+= .. ....+
T Consensus 13 ~~~Ei~v~yi~~~~v~h~~~q~~----~~~~---t~~d~i~d~~~~~~~~~ie~~l~~~~l~~~~~~wq~n~~~~~~~~d 85 (428)
T COG3664 13 TDDEIQVNYIRRHGVWHVNAQKL----FYPF---TYIDEIIDTLLDLGLDLIELFLIWNNLNTKEHQWQLNVDDPKSVFD 85 (428)
T ss_pred hhhhhceeeehhcceeeeeeccc----cCCh---HHHHHHHHHHHHhccHHHHHhhcccchhhhhhhcccccCCcHhHHH
Confidence 34689999999988888333222 3555 7899999999999955445566777765443322221 22 23689
Q ss_pred HHHHHHHHHHHHhCCc---ceEEEeecCCCcc
Q 015710 105 DFGDYADLCFKEFGDR---VKHWITLNEPETV 133 (402)
Q Consensus 105 ~f~~ya~~~~~~~g~~---v~~w~t~NEp~~~ 133 (402)
.++++++.|+.++|-+ .-....+||||..
T Consensus 86 l~~~fl~h~~~~vg~e~v~kw~f~~~~~pn~~ 117 (428)
T COG3664 86 LIAAFLKHVIRRVGVEFVRKWPFYSPNEPNLL 117 (428)
T ss_pred HHHHHHHHHHHHhChhheeecceeecCCCCcc
Confidence 9999999999999963 4456779999964
No 45
>smart00642 Aamy Alpha-amylase domain.
Probab=89.56 E-value=1.7 Score=38.77 Aligned_cols=66 Identities=11% Similarity=0.174 Sum_probs=45.9
Q ss_pred chhhhchHHHHHHHHHcCCCceeeccccCccc---------ccCCCCCCCC--hhHHHHHHHHHHHHHHCCCeEEEEcc
Q 015710 15 DNFYFRYKEDIALVKQVGFDSIRFSISWSRIL---------PHGNISGGVN--QQGVDFYNNLINELISNGLTPFVTLF 82 (402)
Q Consensus 15 ~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~---------P~~~~~g~~n--~~~~~~y~~~i~~l~~~gi~p~vtL~ 82 (402)
...+....+-++-+++||++++-++--+.... |... -.++ ....+-++++|++|+++||++|+.+.
T Consensus 15 ~G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~--~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V 91 (166)
T smart00642 15 GGDLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDY--KQIDPRFGTMEDFKELVDAAHARGIKVILDVV 91 (166)
T ss_pred CcCHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCcccc--CCCCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 34466778888999999999999885443332 1110 0111 12346689999999999999999873
No 46
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=87.88 E-value=0.27 Score=50.57 Aligned_cols=109 Identities=20% Similarity=0.170 Sum_probs=78.3
Q ss_pred hHHHHHHHHHcCCCceeecccc-CcccccCCCCCCCChhH-HHHHHHHHHHHHHCCCeEEEEcc----CCCCchhhHhhc
Q 015710 21 YKEDIALVKQVGFDSIRFSISW-SRILPHGNISGGVNQQG-VDFYNNLINELISNGLTPFVTLF----HWDTPQALEDEY 94 (402)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~W-~ri~P~~~~~g~~n~~~-~~~y~~~i~~l~~~gi~p~vtL~----H~~~P~~l~~~~ 94 (402)
.+.|++.++.+|++..|++|-= ..+ -+. .|..|.+. +.+.+.+++.+...+|+.++||. |+.--+|--.=.
T Consensus 28 i~~dle~a~~vg~k~lR~fiLDgEdc-~d~--~G~~na~s~~~y~~~fla~a~~l~lkvlitlivg~~hmgg~Nw~Ipwa 104 (587)
T COG3934 28 IKADLEPAGFVGVKDLRLFILDGEDC-RDK--EGYRNAGSNVWYAAWFLAPAGYLDLKVLITLIVGLKHMGGTNWRIPWA 104 (587)
T ss_pred hhcccccccCccceeEEEEEecCcch-hhh--hceecccccHHHHHHHhhhcccCcceEEEEEeecccccCcceeEeecC
Confidence 3468899999999999999532 222 122 26777776 88999999999999999999986 333222211101
Q ss_pred CC------CCChhhHHHHHHHHHHHHHHhCCc--ceEEEeecCCCc
Q 015710 95 GG------FLSPKIVKDFGDYADLCFKEFGDR--VKHWITLNEPET 132 (402)
Q Consensus 95 gg------~~~~~~~~~f~~ya~~~~~~~g~~--v~~w~t~NEp~~ 132 (402)
|+ ...+.+..-|.+|++-+++.|+.. +-.|..-|||-+
T Consensus 105 g~~~pdn~iyD~k~~~~~kkyvedlVk~yk~~ptI~gw~l~Ne~lv 150 (587)
T COG3934 105 GEQSPDNVIYDPKFRGPGKKYVEDLVKPYKLDPTIAGWALRNEPLV 150 (587)
T ss_pred CCCCccccccchhhcccHHHHHHHHhhhhccChHHHHHHhcCCccc
Confidence 22 234667788999999999988864 688999999765
No 47
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=81.53 E-value=54 Score=32.34 Aligned_cols=101 Identities=22% Similarity=0.334 Sum_probs=65.7
Q ss_pred hhchHHHHHHHHHcCCCceeecccc-------CcccccCC-CCCCC-ChhHHHHHHHHHHHHHHCCCeEEEEc-cC----
Q 015710 18 YFRYKEDIALVKQVGFDSIRFSISW-------SRILPHGN-ISGGV-NQQGVDFYNNLINELISNGLTPFVTL-FH---- 83 (402)
Q Consensus 18 y~~~~eDi~l~~~lG~~~~R~si~W-------~ri~P~~~-~~g~~-n~~~~~~y~~~i~~l~~~gi~p~vtL-~H---- 83 (402)
-...++-++.|+++|+|++=+.+.+ |.++|... ..|.. ...+.+.+..+|++++++||++..-+ ..
T Consensus 18 ~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~~~~ 97 (311)
T PF02638_consen 18 KEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGFNAP 97 (311)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeecCCC
Confidence 3456677899999999987666544 44555311 00111 11245678999999999999998654 11
Q ss_pred ------CCCchhhHhh-------c----CC--CCC---hhhHHHHHHHHHHHHHHhC
Q 015710 84 ------WDTPQALEDE-------Y----GG--FLS---PKIVKDFGDYADLCFKEFG 118 (402)
Q Consensus 84 ------~~~P~~l~~~-------~----gg--~~~---~~~~~~f~~ya~~~~~~~g 118 (402)
-..|.|+... + |+ |+| |++.+...+-++.++++|.
T Consensus 98 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Yd 154 (311)
T PF02638_consen 98 DVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYD 154 (311)
T ss_pred chhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCC
Confidence 1246664311 1 22 554 7788999999999999995
No 48
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=77.73 E-value=11 Score=32.33 Aligned_cols=88 Identities=11% Similarity=0.214 Sum_probs=56.3
Q ss_pred HHHHHHHcCCCceeecc------cc--CcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccC-C------CCch
Q 015710 24 DIALVKQVGFDSIRFSI------SW--SRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFH-W------DTPQ 88 (402)
Q Consensus 24 Di~l~~~lG~~~~R~si------~W--~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H-~------~~P~ 88 (402)
=++.||++|+|++-+.. +| +++.+.- +..+ -+.+.++|++|+++||++++=+-. + ..|.
T Consensus 5 ~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~h-----p~L~-~Dllge~v~a~h~~Girv~ay~~~~~d~~~~~~HPe 78 (132)
T PF14871_consen 5 FVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRH-----PGLK-RDLLGEQVEACHERGIRVPAYFDFSWDEDAAERHPE 78 (132)
T ss_pred HHHHHHHhCCCEEEEEcccccEEEEccCCCCcCC-----CCCC-cCHHHHHHHHHHHCCCEEEEEEeeecChHHHHhCCc
Confidence 37899999999999933 22 3333221 2222 367899999999999999985543 2 3488
Q ss_pred hhHhhcC------------CC----CChhhHHHHHHHHHHHHHHh
Q 015710 89 ALEDEYG------------GF----LSPKIVKDFGDYADLCFKEF 117 (402)
Q Consensus 89 ~l~~~~g------------g~----~~~~~~~~f~~ya~~~~~~~ 117 (402)
|+...-. || .|....+...+-.+.++++|
T Consensus 79 W~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~y 123 (132)
T PF14871_consen 79 WFVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDRY 123 (132)
T ss_pred eeeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHcC
Confidence 8753211 24 23444556666666667777
No 49
>PLN02361 alpha-amylase
Probab=74.88 E-value=8.6 Score=39.44 Aligned_cols=66 Identities=11% Similarity=0.295 Sum_probs=45.9
Q ss_pred hhhhchHHHHHHHHHcCCCceeeccccCcccccCCC-CC--CCC--hhHHHHHHHHHHHHHHCCCeEEEEc
Q 015710 16 NFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNI-SG--GVN--QQGVDFYNNLINELISNGLTPFVTL 81 (402)
Q Consensus 16 d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~-~g--~~n--~~~~~~y~~~i~~l~~~gi~p~vtL 81 (402)
.+|....+-++-|++||++++=++-...-.-+.|-- .. .+| .-..+=++++|++|+++||++|+.+
T Consensus 26 ~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 26 DWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 478889999999999999999888544333222210 00 011 1123558999999999999999975
No 50
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=72.09 E-value=25 Score=34.38 Aligned_cols=104 Identities=14% Similarity=0.213 Sum_probs=67.5
Q ss_pred HHHHHHHHHcCCC--ceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCCCC---chh-------
Q 015710 22 KEDIALVKQVGFD--SIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDT---PQA------- 89 (402)
Q Consensus 22 ~eDi~l~~~lG~~--~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~---P~~------- 89 (402)
.+-++.+++.|+. .+=+.+.|..-. +. -.+|.+..--..++|+.|+++|+++++.+.=+-. +..
T Consensus 33 ~~~~~~~~~~~iP~d~i~iD~~w~~~~--g~--f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~~s~~~~e~~~~g 108 (303)
T cd06592 33 LNYAQEIIDNGFPNGQIEIDDNWETCY--GD--FDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINTDSENFREAVEKG 108 (303)
T ss_pred HHHHHHHHHcCCCCCeEEeCCCccccC--Cc--cccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCCCCHHHHhhhhCC
Confidence 4447888999965 666666775432 21 2445444444689999999999999987653211 111
Q ss_pred --hHhhcC-------------C---CCChhhHHHHHHHHHHHHHHhCCcce-EEEeecCCC
Q 015710 90 --LEDEYG-------------G---FLSPKIVKDFGDYADLCFKEFGDRVK-HWITLNEPE 131 (402)
Q Consensus 90 --l~~~~g-------------g---~~~~~~~~~f~~ya~~~~~~~g~~v~-~w~t~NEp~ 131 (402)
+.+..| + ++|++..+.|.+..+.++...| |+ +|+=+|||.
T Consensus 109 ~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~G--vdg~w~D~~E~~ 167 (303)
T cd06592 109 YLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEKYG--IDSFKFDAGEAS 167 (303)
T ss_pred eEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHHhC--CcEEEeCCCCcc
Confidence 100001 1 6789999999998888887775 44 455599997
No 51
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=71.81 E-value=27 Score=33.82 Aligned_cols=55 Identities=20% Similarity=0.270 Sum_probs=41.0
Q ss_pred CCcccchhhhchHHHHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEcc
Q 015710 10 NGDVADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF 82 (402)
Q Consensus 10 ~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~ 82 (402)
+.|-+|-.=..+..|+++++..+. .+|.= | -|... ..++...+.+.|++.++.++
T Consensus 54 n~dGtCKSa~~~~sDLe~l~~~t~-~IR~Y-------------~-sDCn~---le~v~pAa~~~g~kv~lGiw 108 (305)
T COG5309 54 NDDGTCKSADQVASDLELLASYTH-SIRTY-------------G-SDCNT---LENVLPAAEASGFKVFLGIW 108 (305)
T ss_pred CCCCCCcCHHHHHhHHHHhccCCc-eEEEe-------------e-ccchh---hhhhHHHHHhcCceEEEEEe
Confidence 334578888899999999999887 55531 2 23322 47888999999999998884
No 52
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=71.80 E-value=3.3 Score=40.88 Aligned_cols=71 Identities=14% Similarity=0.368 Sum_probs=33.5
Q ss_pred cCCCCEEEeecCCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCCe-----EEEEEeeccccccccCC--Cc
Q 015710 282 YNPPPIYITENGVGDVNSSSWPISYALNDTVRVNYYNDHLSYILEAINSGGVDV-----RGYFAWSFLDNYEWEYG--YT 354 (402)
Q Consensus 282 Y~~ppI~ITENG~~~~~~~~~~~~~~i~D~~Ri~yl~~hl~~v~~Ai~~dGv~v-----~GY~~WSl~Dn~eW~~g--~~ 354 (402)
+++.+|+|||+|++..... ..+... - +.+.+.+.+.+.+ |.+. .-+++.++.|- .|-.| .+
T Consensus 225 ~~~~~vvv~ETGWPs~G~~----~a~~~n--A----~~~~~nl~~~~~~-gt~~~~~~~~~~y~F~~FdE-~~K~~~~~E 292 (310)
T PF00332_consen 225 FPNVPVVVGETGWPSAGDP----GATPEN--A----QAYNQNLIKHVLK-GTPLRPGNGIDVYIFEAFDE-NWKPGPEVE 292 (310)
T ss_dssp -TT--EEEEEE---SSSST----TCSHHH--H----HHHHHHHHHHCCG-BBSSSBSS---EEES-SB---TTSSSSGGG
T ss_pred CCCceeEEeccccccCCCC----CCCcch--h----HHHHHHHHHHHhC-CCcccCCCCCeEEEEEEecC-cCCCCCccc
Confidence 3455799999999976530 011111 1 3344445555555 6664 34778888885 56555 58
Q ss_pred CceeeEEEcC
Q 015710 355 SRFGIIYVDY 364 (402)
Q Consensus 355 ~rfGL~~VD~ 364 (402)
+.|||++-|.
T Consensus 293 ~~wGlf~~d~ 302 (310)
T PF00332_consen 293 RHWGLFYPDG 302 (310)
T ss_dssp GG--SB-TTS
T ss_pred ceeeeECCCC
Confidence 9999997664
No 53
>KOG2233 consensus Alpha-N-acetylglucosaminidase [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.41 E-value=44 Score=34.97 Aligned_cols=114 Identities=18% Similarity=0.298 Sum_probs=69.4
Q ss_pred hhchHHHHHHHHHcCCCceeec----cccCcccccC--------------------------CCCCCCChhH----HHHH
Q 015710 18 YFRYKEDIALVKQVGFDSIRFS----ISWSRILPHG--------------------------NISGGVNQQG----VDFY 63 (402)
Q Consensus 18 y~~~~eDi~l~~~lG~~~~R~s----i~W~ri~P~~--------------------------~~~g~~n~~~----~~~y 63 (402)
|.+|+..|+.|+=.|+|..=.. +-|.+|+-.- .-.|....+- +--=
T Consensus 77 w~qWeR~iDWmALnGinl~la~~gQEaIWqkVf~~lgl~~eeldeyftgpAflAW~RMGNl~awgGpLs~aw~~~ql~Lq 156 (666)
T KOG2233|consen 77 WEQWEREIDWMALNGINLVLAPLGQEAIWQKVFMGLGLQREELDEYFTGPAFLAWHRMGNLHAWGGPLSPAWMLNQLLLQ 156 (666)
T ss_pred hHHHHhHhhHHHHcCcceeeccchhHHHHHHHHHHcCCCHHHHHHhcccHHHHHHHHhcCccccCCCCCHHHHHHHHHHH
Confidence 6799999999999999954322 2243333210 0013333321 2223
Q ss_pred HHHHHHHHHCCCeEEEEccCCCCchhhHhhc--------CCCC------------C---hhhHHHHHHHHHHHHHHhCC-
Q 015710 64 NNLINELISNGLTPFVTLFHWDTPQALEDEY--------GGFL------------S---PKIVKDFGDYADLCFKEFGD- 119 (402)
Q Consensus 64 ~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~--------gg~~------------~---~~~~~~f~~ya~~~~~~~g~- 119 (402)
.++|+++++-||+|++--+---.|..|..-+ +.|. + +-+.+-=..|.+...+.||+
T Consensus 157 krIidrm~~lGmTpvLPaFaG~VP~al~rlfPesnf~rl~rWn~f~s~~~C~l~v~P~dplF~eIgs~Flr~~~kefG~~ 236 (666)
T KOG2233|consen 157 KRIIDRMLELGMTPVLPAFAGHVPDALERLFPESNFTRLPRWNNFTSRYSCMLLVSPFDPLFQEIGSTFLRHQIKEFGGV 236 (666)
T ss_pred HHHHHHHHHcCCCccchhhccccHHHHHHhCchhceeeccccCCCCcceeeeEEccCCcchHHHHHHHHHHHHHHHhCCc
Confidence 6899999999999999887766787775421 2232 1 22344445666677888996
Q ss_pred -cceEEEeecCCC
Q 015710 120 -RVKHWITLNEPE 131 (402)
Q Consensus 120 -~v~~w~t~NEp~ 131 (402)
.+-.=-||||..
T Consensus 237 tniy~~DpFNE~~ 249 (666)
T KOG2233|consen 237 TNIYSADPFNEIL 249 (666)
T ss_pred ccccccCcccccC
Confidence 233334688853
No 54
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=70.43 E-value=34 Score=33.72 Aligned_cols=87 Identities=20% Similarity=0.412 Sum_probs=60.2
Q ss_pred hhchHHHHHHHHHcCCCceeec-c--ccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHhhc
Q 015710 18 YFRYKEDIALVKQVGFDSIRFS-I--SWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEY 94 (402)
Q Consensus 18 y~~~~eDi~l~~~lG~~~~R~s-i--~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ 94 (402)
..||.+=.++++++|+|..-+. + .-..|- .+-++.+.++-+.++..||++.+++. |..|.-+
T Consensus 56 ~~R~~~YARllASiGINgvvlNNVNa~~~~Lt----------~~~l~~v~~lAdvfRpYGIkv~LSvn-FasP~~l---- 120 (328)
T PF07488_consen 56 LTRYRDYARLLASIGINGVVLNNVNANPKLLT----------PEYLDKVARLADVFRPYGIKVYLSVN-FASPIEL---- 120 (328)
T ss_dssp -HHHHHHHHHHHHTT--EEE-S-SS--CGGGS----------TTTHHHHHHHHHHHHHTT-EEEEEE--TTHHHHT----
T ss_pred hhHHHHHHHHHhhcCCceEEecccccChhhcC----------HHHHHHHHHHHHHHhhcCCEEEEEee-ccCCccc----
Confidence 4577888899999999988765 2 222221 12356678999999999999999995 6778654
Q ss_pred CCC-----CChhhHHHHHHHHHHHHHHhCC
Q 015710 95 GGF-----LSPKIVKDFGDYADLCFKEFGD 119 (402)
Q Consensus 95 gg~-----~~~~~~~~f~~ya~~~~~~~g~ 119 (402)
||- ++++++.++.+=++.+.++..|
T Consensus 121 ggL~TaDPld~~V~~WW~~k~~eIY~~IPD 150 (328)
T PF07488_consen 121 GGLPTADPLDPEVRQWWKDKADEIYSAIPD 150 (328)
T ss_dssp TS-S---TTSHHHHHHHHHHHHHHHHH-TT
T ss_pred CCcCcCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 553 5688999999999999988765
No 55
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=66.53 E-value=12 Score=35.50 Aligned_cols=59 Identities=15% Similarity=0.364 Sum_probs=40.1
Q ss_pred hHHHHHHHHHcCCCceeeccccCcccccCCCCC---------CCChhHHHHHHHHHHHHHHCCCeEEEEcc
Q 015710 21 YKEDIALVKQVGFDSIRFSISWSRILPHGNISG---------GVNQQGVDFYNNLINELISNGLTPFVTLF 82 (402)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g---------~~n~~~~~~y~~~i~~l~~~gi~p~vtL~ 82 (402)
..+-++-+|+||++++-++--+. -|... -| .......+=++++|++|.++||++|+++.
T Consensus 6 i~~kLdyl~~lGv~~I~l~Pi~~--~~~~~-~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V 73 (316)
T PF00128_consen 6 IIDKLDYLKDLGVNAIWLSPIFE--SPNGY-HGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVV 73 (316)
T ss_dssp HHHTHHHHHHHTESEEEESS-EE--SSSST-TTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHhhHHHHHcCCCceecccccc--ccccc-ccccceeeeccccccchhhhhhhhhhccccccceEEEeee
Confidence 34568899999999999984333 11010 01 11122456789999999999999999874
No 56
>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase gene can lead to mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B), characterised by neurological dysfunction but relatively mild somatic manifestations []. Alpha-N-acetylglucosaminidase is composed of three domains. This entry represents the central domain, which has a tim barrel fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=66.33 E-value=61 Score=32.36 Aligned_cols=112 Identities=24% Similarity=0.479 Sum_probs=57.5
Q ss_pred hhchHHHHHHHHHcCCCce---------------eec---------------cccCcccccCCCCCCCCh----hHHHHH
Q 015710 18 YFRYKEDIALVKQVGFDSI---------------RFS---------------ISWSRILPHGNISGGVNQ----QGVDFY 63 (402)
Q Consensus 18 y~~~~eDi~l~~~lG~~~~---------------R~s---------------i~W~ri~P~~~~~g~~n~----~~~~~y 63 (402)
|.+|++.|+.|+=-|||.. +++ +.|.|.---....|.... +-.+-=
T Consensus 18 W~rWEreIDWMALnGiNl~La~~GqEavw~~v~~~~G~t~~ei~~ff~GPA~laW~rMgNl~gwgGPLp~~w~~~q~~Lq 97 (333)
T PF05089_consen 18 WERWEREIDWMALNGINLPLAIVGQEAVWQRVLRELGLTDEEIREFFTGPAFLAWWRMGNLQGWGGPLPQSWIDQQAELQ 97 (333)
T ss_dssp HHHHHHHHHHHHHTT--EEE--TTHHHHHHHHHGGGT--HHHHHHHS--TT-HHHHHTTS--STT----TTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHhCCcccCCCCCCHHHHHHHHHHH
Confidence 7899999999999999932 111 234333211000133222 223445
Q ss_pred HHHHHHHHHCCCeEEEEccCCCCchhhHhhc--------C---C-----CCChhhHHHHHHHHHHH----HHHhCCcceE
Q 015710 64 NNLINELISNGLTPFVTLFHWDTPQALEDEY--------G---G-----FLSPKIVKDFGDYADLC----FKEFGDRVKH 123 (402)
Q Consensus 64 ~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~--------g---g-----~~~~~~~~~f~~ya~~~----~~~~g~~v~~ 123 (402)
+++++++++-||+|++--+---.|..|.+++ | | |+.| .-+.|++.++.. .+.|| .-.+
T Consensus 98 ~kIl~RmreLGm~PVLPaF~G~VP~~~~~~~P~a~i~~~~~W~~f~~~~~L~P-~dplF~~i~~~F~~~q~~~yG-~~~~ 175 (333)
T PF05089_consen 98 KKILDRMRELGMTPVLPAFAGHVPRAFKRKYPNANITRQGNWNGFCRPYFLDP-TDPLFAEIAKLFYEEQIKLYG-TDHI 175 (333)
T ss_dssp HHHHHHHHHHT-EEEEE--S-EE-TTHHHHSTT--EE---EETTEE--EEE-S-S--HHHHHHHHHHHHHHHHH----SE
T ss_pred HHHHHHHHHcCCcccCCCcCCCCChHHHhcCCCCEEeeCCCcCCCCCCceeCC-CCchHHHHHHHHHHHHHHhcC-CCce
Confidence 7899999999999999887666788777654 2 2 2223 235677766665 45688 4455
Q ss_pred EEe--ecCCC
Q 015710 124 WIT--LNEPE 131 (402)
Q Consensus 124 w~t--~NEp~ 131 (402)
|.. |||-.
T Consensus 176 Y~~D~FnE~~ 185 (333)
T PF05089_consen 176 YAADPFNEGG 185 (333)
T ss_dssp EE--TTTTS-
T ss_pred eCCCccCCCC
Confidence 543 88843
No 57
>PLN00196 alpha-amylase; Provisional
Probab=66.25 E-value=13 Score=38.41 Aligned_cols=65 Identities=9% Similarity=0.171 Sum_probs=44.3
Q ss_pred hhhchHHHHHHHHHcCCCceeeccccCcccccCC-CCC--CCC---hhHHHHHHHHHHHHHHCCCeEEEEc
Q 015710 17 FYFRYKEDIALVKQVGFDSIRFSISWSRILPHGN-ISG--GVN---QQGVDFYNNLINELISNGLTPFVTL 81 (402)
Q Consensus 17 ~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~-~~g--~~n---~~~~~~y~~~i~~l~~~gi~p~vtL 81 (402)
+|....+.+.-|++||++++=++-......+.|- ... .+| .-..+=++++|++++++||++|+..
T Consensus 42 ~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDv 112 (428)
T PLN00196 42 WYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADI 112 (428)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 5666788899999999999988854433322221 000 111 1123458999999999999999974
No 58
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=65.54 E-value=18 Score=35.13 Aligned_cols=86 Identities=12% Similarity=0.071 Sum_probs=62.3
Q ss_pred hHHHHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHhhcCCCCCh
Q 015710 21 YKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSP 100 (402)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~ 100 (402)
-+.|++++++.|++.+++.++=|...-.... +.--.+.++...++|..+++.|+++.+++-+|+.|. +
T Consensus 76 ~~~~~~~A~~~g~~~i~i~~~~S~~h~~~~~-~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~-----------r 143 (280)
T cd07945 76 GDKSVDWIKSAGAKVLNLLTKGSLKHCTEQL-RKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGM-----------R 143 (280)
T ss_pred cHHHHHHHHHCCCCEEEEEEeCCHHHHHHHH-CcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCC-----------c
Confidence 3668999999999999999866655433210 223356788899999999999999999998776663 1
Q ss_pred hhHHHHHHHHHHHHHHhCC
Q 015710 101 KIVKDFGDYADLCFKEFGD 119 (402)
Q Consensus 101 ~~~~~f~~ya~~~~~~~g~ 119 (402)
..++.+.++++.+.+ .|-
T Consensus 144 ~~~~~~~~~~~~~~~-~G~ 161 (280)
T cd07945 144 DSPDYVFQLVDFLSD-LPI 161 (280)
T ss_pred CCHHHHHHHHHHHHH-cCC
Confidence 124677777777654 453
No 59
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=64.71 E-value=33 Score=33.62 Aligned_cols=84 Identities=11% Similarity=0.065 Sum_probs=52.6
Q ss_pred HHHHHcCCCceeeccc--cCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHhhcCCCCChhhH
Q 015710 26 ALVKQVGFDSIRFSIS--WSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSPKIV 103 (402)
Q Consensus 26 ~l~~~lG~~~~R~si~--W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~ 103 (402)
+.+++.|++++-+++- -....|.- .|.............|..|+++|++++|.+--+.-... -.+...+
T Consensus 19 ~~~~~~g~~~v~lAFi~~~~~~~~~w--~g~~~~~~~~~~~~~i~~lk~~G~kViiS~GG~~g~~~-------~~~~~~~ 89 (294)
T cd06543 19 TYAAATGVKAFTLAFIVASGGCKPAW--GGSYPLDQGGWIKSDIAALRAAGGDVIVSFGGASGTPL-------ATSCTSA 89 (294)
T ss_pred HHHHHcCCCEEEEEEEEcCCCCcccC--CCCCCcccchhHHHHHHHHHHcCCeEEEEecCCCCCcc-------ccCcccH
Confidence 5677899999888743 22222221 02111011234577899999999999998843332110 0145678
Q ss_pred HHHHHHHHHHHHHhC
Q 015710 104 KDFGDYADLCFKEFG 118 (402)
Q Consensus 104 ~~f~~ya~~~~~~~g 118 (402)
+.|++....+.+.|+
T Consensus 90 ~~~~~a~~~~i~~y~ 104 (294)
T cd06543 90 DQLAAAYQKVIDAYG 104 (294)
T ss_pred HHHHHHHHHHHHHhC
Confidence 888888888889997
No 60
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=62.94 E-value=20 Score=36.05 Aligned_cols=97 Identities=13% Similarity=0.172 Sum_probs=56.0
Q ss_pred hHHHHHHHHHcCCCceeeccccCcccccCC-CCCCCChhHHHHHHHHHHHHHHCCCeEE-EEccCCCCchhhHhhcCCCC
Q 015710 21 YKEDIALVKQVGFDSIRFSISWSRILPHGN-ISGGVNQQGVDFYNNLINELISNGLTPF-VTLFHWDTPQALEDEYGGFL 98 (402)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~-~~g~~n~~~~~~y~~~i~~l~~~gi~p~-vtL~H~~~P~~l~~~~gg~~ 98 (402)
-++.++.|+++|++. +||.-..+-++-- .-|... ..+-..+.|+.+++.|+..+ +.| =+++|. .
T Consensus 98 t~e~l~~l~~~G~~r--vsiGvqS~~d~~L~~l~R~~--~~~~~~~ai~~l~~~g~~~v~~dl-i~GlPg---------q 163 (374)
T PRK05799 98 TEEKLKILKSMGVNR--LSIGLQAWQNSLLKYLGRIH--TFEEFLENYKLARKLGFNNINVDL-MFGLPN---------Q 163 (374)
T ss_pred CHHHHHHHHHcCCCE--EEEECccCCHHHHHHcCCCC--CHHHHHHHHHHHHHcCCCcEEEEe-ecCCCC---------C
Confidence 357799999999994 5554443333210 002211 23557889999999999744 444 246663 2
Q ss_pred ChhhHHHHHHHHHHHHHHhCCcceEEEeecCCCccc
Q 015710 99 SPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVG 134 (402)
Q Consensus 99 ~~~~~~~f~~ya~~~~~~~g~~v~~w~t~NEp~~~~ 134 (402)
+ .+.|.+-.+.+.+.=-+.|..+...-+|+...
T Consensus 164 t---~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l 196 (374)
T PRK05799 164 T---LEDWKETLEKVVELNPEHISCYSLIIEEGTPF 196 (374)
T ss_pred C---HHHHHHHHHHHHhcCCCEEEEeccEecCCCHH
Confidence 2 44555555555443225666666556777543
No 61
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=61.52 E-value=4.9 Score=31.72 Aligned_cols=19 Identities=37% Similarity=0.693 Sum_probs=14.1
Q ss_pred HHHHhCC--cceEEEeecC-CC
Q 015710 113 CFKEFGD--RVKHWITLNE-PE 131 (402)
Q Consensus 113 ~~~~~g~--~v~~w~t~NE-p~ 131 (402)
++++||+ +|.+|..+|| |+
T Consensus 1 iv~~~~~~~~Il~Wdl~NE~p~ 22 (88)
T PF12876_consen 1 IVTRFGYDPRILAWDLWNEPPN 22 (88)
T ss_dssp -HHHTT-GGGEEEEESSTTTT-
T ss_pred CchhhcCCCCEEEEEeecCCCC
Confidence 4678875 7999999999 66
No 62
>PRK12313 glycogen branching enzyme; Provisional
Probab=61.14 E-value=44 Score=36.37 Aligned_cols=93 Identities=18% Similarity=0.336 Sum_probs=58.8
Q ss_pred hhchHHH-HHHHHHcCCCceeec-c-------ccC-------cccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEc
Q 015710 18 YFRYKED-IALVKQVGFDSIRFS-I-------SWS-------RILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (402)
Q Consensus 18 y~~~~eD-i~l~~~lG~~~~R~s-i-------~W~-------ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 81 (402)
|.-..+. ++-+|+||++++=+. | +|. .+.|.= | ..+=++++|++|.++||++|+.+
T Consensus 169 ~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~---G-----t~~d~k~lv~~~H~~Gi~VilD~ 240 (633)
T PRK12313 169 YRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRY---G-----TPEDFMYLVDALHQNGIGVILDW 240 (633)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCC---C-----CHHHHHHHHHHHHHCCCEEEEEE
Confidence 4445566 499999999999876 3 221 111111 2 23458999999999999999984
Q ss_pred --cCCCCch----hhH--------hh----cCCC-------CChhhHHHHHHHHHHHHHHhC
Q 015710 82 --FHWDTPQ----ALE--------DE----YGGF-------LSPKIVKDFGDYADLCFKEFG 118 (402)
Q Consensus 82 --~H~~~P~----~l~--------~~----~gg~-------~~~~~~~~f~~ya~~~~~~~g 118 (402)
.|+.... ++. +. ..+| .++++.+.+.+-++.-++.|+
T Consensus 241 V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~ 302 (633)
T PRK12313 241 VPGHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYH 302 (633)
T ss_pred CCCCCCCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 4542110 110 00 0122 367788888888888888886
No 63
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=60.53 E-value=27 Score=35.13 Aligned_cols=87 Identities=11% Similarity=0.048 Sum_probs=63.4
Q ss_pred hHHHHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccC-CCCchhhHhhcCCCCC
Q 015710 21 YKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFH-WDTPQALEDEYGGFLS 99 (402)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H-~~~P~~l~~~~gg~~~ 99 (402)
-.+|++++.+.|++.+.+.++=|...-.... +.=-.+.++.+.++|+.++++|+++.+++.. |+.|. .|-.
T Consensus 123 n~~die~A~~~g~~~v~i~~s~Sd~h~~~n~-~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~------~~r~- 194 (347)
T PLN02746 123 NLKGFEAAIAAGAKEVAVFASASESFSKSNI-NCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPI------EGPV- 194 (347)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCc------cCCC-
Confidence 4799999999999999999877665433211 3334577889999999999999999877754 56662 3323
Q ss_pred hhhHHHHHHHHHHHHHHhC
Q 015710 100 PKIVKDFGDYADLCFKEFG 118 (402)
Q Consensus 100 ~~~~~~f~~ya~~~~~~~g 118 (402)
.++.+.++++.+.+ .|
T Consensus 195 --~~~~l~~~~~~~~~-~G 210 (347)
T PLN02746 195 --PPSKVAYVAKELYD-MG 210 (347)
T ss_pred --CHHHHHHHHHHHHH-cC
Confidence 36677788887654 45
No 64
>PLN02784 alpha-amylase
Probab=59.03 E-value=26 Score=39.32 Aligned_cols=66 Identities=17% Similarity=0.317 Sum_probs=46.1
Q ss_pred hhhhchHHHHHHHHHcCCCceeeccccCcccccCCC-CCC--CC--hhHHHHHHHHHHHHHHCCCeEEEEc
Q 015710 16 NFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNI-SGG--VN--QQGVDFYNNLINELISNGLTPFVTL 81 (402)
Q Consensus 16 d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~-~g~--~n--~~~~~~y~~~i~~l~~~gi~p~vtL 81 (402)
.+|....+.++-|++||++++=++-......+.|-. .+- +| .-..+=++.+|++|+++||++|+.+
T Consensus 518 ~w~~~I~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 518 RWYMELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA 588 (894)
T ss_pred chHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 468888999999999999999887544333332210 000 11 1124568999999999999999975
No 65
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=58.15 E-value=2.2e+02 Score=29.10 Aligned_cols=131 Identities=15% Similarity=0.203 Sum_probs=75.7
Q ss_pred HHHHHHHcCCCceeeccccCc-----------ccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEcc----------
Q 015710 24 DIALVKQVGFDSIRFSISWSR-----------ILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF---------- 82 (402)
Q Consensus 24 Di~l~~~lG~~~~R~si~W~r-----------i~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~---------- 82 (402)
-++.++++|++.+=+.--|.. .+|++ .+| +.| ...+++.+++.|+++-+=+-
T Consensus 63 ~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~---~kF-P~G---l~~l~~~i~~~Gmk~GlW~ePe~v~~~S~l 135 (394)
T PF02065_consen 63 LADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDP---KKF-PNG---LKPLADYIHSLGMKFGLWFEPEMVSPDSDL 135 (394)
T ss_dssp HHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBT---TTS-TTH---HHHHHHHHHHTT-EEEEEEETTEEESSSCH
T ss_pred HHHHHHHhCCEEEEEcCccccccCCCcccCCceeECh---hhh-CCc---HHHHHHHHHHCCCeEEEEeccccccchhHH
Confidence 368999999998888888954 33333 223 124 58899999999999966330
Q ss_pred CCCCchhhHhhcC-----C-------CCChhhHHHHHHHHHHHHHHhCCcceEEEe-ecCCCcccccccccCccCCCCCC
Q 015710 83 HWDTPQALEDEYG-----G-------FLSPKIVKDFGDYADLCFKEFGDRVKHWIT-LNEPETVGECGYAKGTKAPGRCS 149 (402)
Q Consensus 83 H~~~P~~l~~~~g-----g-------~~~~~~~~~f~~ya~~~~~~~g~~v~~w~t-~NEp~~~~~~gy~~g~~~Pg~~~ 149 (402)
.-.+|.|+...-+ | ..+++..++..+-...+++.+| |.|.-. +|... -.+|...
T Consensus 136 ~~~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~~g--idYiK~D~n~~~-----------~~~~~~~ 202 (394)
T PF02065_consen 136 YREHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLREWG--IDYIKWDFNRDI-----------TEAGSPS 202 (394)
T ss_dssp CCSSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT---SEEEEE-TS-T-----------TS-SSTT
T ss_pred HHhCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHhcC--CCEEEeccccCC-----------CCCCCCC
Confidence 1246888643101 1 3567888888887877788876 444433 34321 1122111
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhccc
Q 015710 150 NYIGNCPAGNSATEPYVAAHHLILSHATAVKLYRQNYQA 188 (402)
Q Consensus 150 ~~~~~~~~g~~~~~~~~~~~nll~Aha~A~~~~r~~~~~ 188 (402)
.. .+.|...++--+.++.+++.+|.
T Consensus 203 ------------~~--~~~~~~~~~~y~l~~~L~~~~P~ 227 (394)
T PF02065_consen 203 ------------LP--EGYHRYVLGLYRLLDRLRARFPD 227 (394)
T ss_dssp ------------S---GHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ------------ch--HHHHHHHHHHHHHHHHHHHhCCC
Confidence 01 34555555555567888888774
No 66
>PRK05402 glycogen branching enzyme; Provisional
Probab=57.82 E-value=61 Score=35.90 Aligned_cols=100 Identities=16% Similarity=0.262 Sum_probs=57.8
Q ss_pred hhchHHHH-HHHHHcCCCceeec-c-c------cCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEc--cCCCC
Q 015710 18 YFRYKEDI-ALVKQVGFDSIRFS-I-S------WSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL--FHWDT 86 (402)
Q Consensus 18 y~~~~eDi-~l~~~lG~~~~R~s-i-~------W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL--~H~~~ 86 (402)
|.-..+.+ +-+|+||++++=+. | + |- -.|.....=.......+=++++|++|.++||++|+.+ .|+..
T Consensus 264 ~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~G-Y~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~V~NH~~~ 342 (726)
T PRK05402 264 YRELADQLIPYVKEMGFTHVELLPIAEHPFDGSWG-YQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILDWVPAHFPK 342 (726)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCC-CCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC
Confidence 33444453 78899999999777 3 1 21 1111000000011124558999999999999999984 35421
Q ss_pred c-----------hhhHh-----hcCC-------CCChhhHHHHHHHHHHHHHHhC
Q 015710 87 P-----------QALED-----EYGG-------FLSPKIVKDFGDYADLCFKEFG 118 (402)
Q Consensus 87 P-----------~~l~~-----~~gg-------~~~~~~~~~f~~ya~~~~~~~g 118 (402)
. .+... .+.. +.++++.+.+.+-++.-+++|+
T Consensus 343 ~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e~~ 397 (726)
T PRK05402 343 DAHGLARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWLEEFH 397 (726)
T ss_pred CccchhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHHHHhC
Confidence 1 11110 0011 3467788888888888888886
No 67
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=57.57 E-value=70 Score=31.19 Aligned_cols=107 Identities=14% Similarity=0.180 Sum_probs=65.0
Q ss_pred chHHHHHHHHHcCCC--ceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCCC---CchhhHh--
Q 015710 20 RYKEDIALVKQVGFD--SIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWD---TPQALED-- 92 (402)
Q Consensus 20 ~~~eDi~l~~~lG~~--~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~---~P~~l~~-- 92 (402)
...+-++.+++.|+. ++=+.+.|.+-.-.+. -.+|.+..--..++|++|+++|+++++.+.-+. .|..-..
T Consensus 25 ~v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~--f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~~~~~~~e~~~ 102 (308)
T cd06593 25 EVNEFADGMRERNLPCDVIHLDCFWMKEFQWCD--FEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQKSPLFKEAAE 102 (308)
T ss_pred HHHHHHHHHHHcCCCeeEEEEecccccCCccee--eEECcccCCCHHHHHHHHHHCCCeEEEEecCCCCCCchhHHHHHH
Confidence 345668999999954 5667777874321111 234444444468999999999999988765332 2221100
Q ss_pred h-------------------cCC---CCChhhHHHHHHHHHHHHHHhCCcceEE-EeecCCC
Q 015710 93 E-------------------YGG---FLSPKIVKDFGDYADLCFKEFGDRVKHW-ITLNEPE 131 (402)
Q Consensus 93 ~-------------------~gg---~~~~~~~~~f~~ya~~~~~~~g~~v~~w-~t~NEp~ 131 (402)
+ .++ ++|++..+.|.+..+.+.+ .| |++| +=+||+.
T Consensus 103 ~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~-~G--id~~~~D~~e~~ 161 (308)
T cd06593 103 KGYLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLLD-MG--VDCFKTDFGERI 161 (308)
T ss_pred CCeEEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHHHH-hC--CcEEecCCCCCC
Confidence 0 012 5788888888777776543 43 5544 4488873
No 68
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=56.54 E-value=46 Score=33.98 Aligned_cols=51 Identities=18% Similarity=0.318 Sum_probs=40.4
Q ss_pred hchHHHHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEc
Q 015710 19 FRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (402)
Q Consensus 19 ~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 81 (402)
..|++||++++++||+.|=+.|- .. ..+.. +....+++.+.+.|.+.++.+
T Consensus 17 ~dw~~di~~A~~~GIDgFaLNig------~~---d~~~~---~~l~~a~~AA~~~gFKlf~Sf 67 (386)
T PF03659_consen 17 EDWEADIRLAQAAGIDGFALNIG------SS---DSWQP---DQLADAYQAAEAVGFKLFFSF 67 (386)
T ss_pred HHHHHHHHHHHHcCCCEEEEecc------cC---CcccH---HHHHHHHHHHHhcCCEEEEEe
Confidence 46899999999999999888875 11 23443 456888999999999988887
No 69
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=56.12 E-value=31 Score=34.78 Aligned_cols=61 Identities=20% Similarity=0.105 Sum_probs=47.1
Q ss_pred hHHHHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEcc
Q 015710 21 YKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF 82 (402)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~ 82 (402)
-++|++.+.+.|++.+|+.++-|.+.-.... +.-..+.++...+.|..+++.|+++.+++-
T Consensus 73 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~-~~~~~~~~~~~~~~i~~ak~~G~~v~~~~e 133 (363)
T TIGR02090 73 LKKDIDKAIDCGVDSIHTFIATSPIHLKYKL-KKSRDEVLEKAVEAVEYAKEHGLIVEFSAE 133 (363)
T ss_pred CHHHHHHHHHcCcCEEEEEEcCCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 4899999999999999999887776433210 222345678889999999999999887763
No 70
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=54.78 E-value=24 Score=36.92 Aligned_cols=67 Identities=15% Similarity=0.221 Sum_probs=43.6
Q ss_pred hhhhchHHHHHHHHHcCCCceeeccccC--------cccccCCCC-------CCCC--hhHHHHHHHHHHHHHHCCCeEE
Q 015710 16 NFYFRYKEDIALVKQVGFDSIRFSISWS--------RILPHGNIS-------GGVN--QQGVDFYNNLINELISNGLTPF 78 (402)
Q Consensus 16 d~y~~~~eDi~l~~~lG~~~~R~si~W~--------ri~P~~~~~-------g~~n--~~~~~~y~~~i~~l~~~gi~p~ 78 (402)
+.|.-..+-++-+++||++++=++-... +-.|....+ |.+| .-..+=++++|++|.++||++|
T Consensus 19 ~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi 98 (479)
T PRK09441 19 KLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVY 98 (479)
T ss_pred cHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEE
Confidence 3465567779999999999998874322 222221000 0112 1134558999999999999999
Q ss_pred EEcc
Q 015710 79 VTLF 82 (402)
Q Consensus 79 vtL~ 82 (402)
+.+.
T Consensus 99 ~D~V 102 (479)
T PRK09441 99 ADVV 102 (479)
T ss_pred EEEC
Confidence 9753
No 71
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=54.62 E-value=41 Score=32.75 Aligned_cols=87 Identities=15% Similarity=0.152 Sum_probs=62.2
Q ss_pred hHHHHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccC-CCCchhhHhhcCCCCC
Q 015710 21 YKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFH-WDTPQALEDEYGGFLS 99 (402)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H-~~~P~~l~~~~gg~~~ 99 (402)
-.+|+++..+.|++.+++.++=|...-.... +.=..+.++...++|+.++++|+++..++.. |+.|. .|..
T Consensus 81 ~~~~ie~A~~~g~~~v~i~~~~s~~~~~~n~-~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~------~~~~- 152 (287)
T PRK05692 81 NLKGLEAALAAGADEVAVFASASEAFSQKNI-NCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPY------EGEV- 152 (287)
T ss_pred CHHHHHHHHHcCCCEEEEEEecCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCC------CCCC-
Confidence 4889999999999999999876654322110 2333467888999999999999999887764 55552 3333
Q ss_pred hhhHHHHHHHHHHHHHHhC
Q 015710 100 PKIVKDFGDYADLCFKEFG 118 (402)
Q Consensus 100 ~~~~~~f~~ya~~~~~~~g 118 (402)
..+.+.++++.+.+ .|
T Consensus 153 --~~~~~~~~~~~~~~-~G 168 (287)
T PRK05692 153 --PPEAVADVAERLFA-LG 168 (287)
T ss_pred --CHHHHHHHHHHHHH-cC
Confidence 36777788888765 45
No 72
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=54.61 E-value=43 Score=31.37 Aligned_cols=78 Identities=21% Similarity=0.392 Sum_probs=50.3
Q ss_pred chhhhchHHHHHHHHHcCCCceeec----------------------cccCcccccCCCCCCCChhHHHHHHHHHHHHHH
Q 015710 15 DNFYFRYKEDIALVKQVGFDSIRFS----------------------ISWSRILPHGNISGGVNQQGVDFYNNLINELIS 72 (402)
Q Consensus 15 ~d~y~~~~eDi~l~~~lG~~~~R~s----------------------i~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~ 72 (402)
.+---.-+.=++|||+||.+++.|- + | +||+| -+|. +.+..++..+++
T Consensus 131 ~~~iV~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~-~--lEPTG----GIdl---~Nf~~I~~i~ld 200 (236)
T TIGR03581 131 KEAIVPIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGF-Y--LEPTG----GIDL---DNFEEIVQIALD 200 (236)
T ss_pred CCceeeHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCC-c--cCCCC----CccH---HhHHHHHHHHHH
Confidence 3333445667999999999988763 3 3 57875 3554 678999999999
Q ss_pred CCCeEEEEccCCCCchhhHhhcCCCCChhhHHHH
Q 015710 73 NGLTPFVTLFHWDTPQALEDEYGGFLSPKIVKDF 106 (402)
Q Consensus 73 ~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f 106 (402)
.|++-++ .|- +- ..-|+-.|-+.++-+...
T Consensus 201 aGv~kvi--PHI-Ys-siIDk~tG~TrpedV~~l 230 (236)
T TIGR03581 201 AGVEKVI--PHV-YS-SIIDKETGNTRVEDVKQL 230 (236)
T ss_pred cCCCeec--ccc-ce-eccccccCCCCHHHHHHH
Confidence 9998764 231 11 112333566666655443
No 73
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=54.36 E-value=39 Score=31.83 Aligned_cols=83 Identities=17% Similarity=0.029 Sum_probs=55.3
Q ss_pred HHHHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHhhcCCCCChh
Q 015710 22 KEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSPK 101 (402)
Q Consensus 22 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~ 101 (402)
+++++++++.|++.+|++++-+.+.-... -+.=....++...+.++.+++.|+++.+.+....-| ..
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~-~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~------------~~ 143 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKN-LNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGC------------KT 143 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHH-hCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCC------------CC
Confidence 88999999999999999998774211100 011112245678899999999999999998543333 12
Q ss_pred hHHHHHHHHHHHHHHhC
Q 015710 102 IVKDFGDYADLCFKEFG 118 (402)
Q Consensus 102 ~~~~f~~ya~~~~~~~g 118 (402)
..+.+.++++.+. .+|
T Consensus 144 ~~~~l~~~~~~~~-~~g 159 (265)
T cd03174 144 DPEYVLEVAKALE-EAG 159 (265)
T ss_pred CHHHHHHHHHHHH-HcC
Confidence 3455666666654 345
No 74
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=54.25 E-value=92 Score=30.65 Aligned_cols=110 Identities=15% Similarity=0.197 Sum_probs=63.9
Q ss_pred hHHHHHHHHHcCCC--ceeeccccCcccccCCC--CCCCChhHHHHHHHHHHHHHHCCCeEEEEccCC---CCchh--hH
Q 015710 21 YKEDIALVKQVGFD--SIRFSISWSRILPHGNI--SGGVNQQGVDFYNNLINELISNGLTPFVTLFHW---DTPQA--LE 91 (402)
Q Consensus 21 ~~eDi~l~~~lG~~--~~R~si~W~ri~P~~~~--~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~---~~P~~--l~ 91 (402)
..+-++.+++.|+. ++=+++.|......+.- +-.+|.+..---.++|+.|+++|++.++.++-+ +.|.. +.
T Consensus 26 v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~~~~~~y~e~~ 105 (317)
T cd06598 26 VDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVLKNSKNWGEAV 105 (317)
T ss_pred HHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCcccCCchhHHHHH
Confidence 34446777877765 55556667543221100 012333333334789999999999999987644 33332 00
Q ss_pred hh-c-------------------C---CCCChhhHHHHHHHHHHHHHHhCCcce-EEEeecCCCcc
Q 015710 92 DE-Y-------------------G---GFLSPKIVKDFGDYADLCFKEFGDRVK-HWITLNEPETV 133 (402)
Q Consensus 92 ~~-~-------------------g---g~~~~~~~~~f~~ya~~~~~~~g~~v~-~w~t~NEp~~~ 133 (402)
++ + + -|+|++..+.|.+..+.+ +..-|. +|+=+|||..+
T Consensus 106 ~~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~---~~~Gvdg~w~D~~Ep~~~ 168 (317)
T cd06598 106 KAGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKKL---IDQGVTGWWGDLGEPEVH 168 (317)
T ss_pred hCCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHHHh---hhCCccEEEecCCCcccc
Confidence 00 0 1 256888888887776664 333454 46669999743
No 75
>PRK14706 glycogen branching enzyme; Provisional
Probab=53.54 E-value=52 Score=35.95 Aligned_cols=90 Identities=17% Similarity=0.260 Sum_probs=52.5
Q ss_pred HHHHHcCCCceeec-c-c------cCcccccCCCCCCCC--hhHHHHHHHHHHHHHHCCCeEEEEcc--CCC--------
Q 015710 26 ALVKQVGFDSIRFS-I-S------WSRILPHGNISGGVN--QQGVDFYNNLINELISNGLTPFVTLF--HWD-------- 85 (402)
Q Consensus 26 ~l~~~lG~~~~R~s-i-~------W~ri~P~~~~~g~~n--~~~~~~y~~~i~~l~~~gi~p~vtL~--H~~-------- 85 (402)
+-+|+||++++-+. | + |-- .|... -.++ ....+=++.+|++|.++||++|+.+. |+.
T Consensus 175 ~ylk~lG~t~velmPv~e~~~~~~wGY-~~~~~--~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~~~l~~ 251 (639)
T PRK14706 175 EYVTYMGYTHVELLGVMEHPFDGSWGY-QVTGY--YAPTSRLGTPEDFKYLVNHLHGLGIGVILDWVPGHFPTDESGLAH 251 (639)
T ss_pred HHHHHcCCCEEEccchhcCCCCCCCCc-Ccccc--cccccccCCHHHHHHHHHHHHHCCCEEEEEecccccCcchhhhhc
Confidence 66899999997765 2 1 210 00000 0000 11234579999999999999999744 432
Q ss_pred ---Cchh-hHhhcCC----C-------CChhhHHHHHHHHHHHHHHhC
Q 015710 86 ---TPQA-LEDEYGG----F-------LSPKIVKDFGDYADLCFKEFG 118 (402)
Q Consensus 86 ---~P~~-l~~~~gg----~-------~~~~~~~~f~~ya~~~~~~~g 118 (402)
.|.+ ..+...| | .++++.+.+.+=++.-++.|+
T Consensus 252 ~dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~~ 299 (639)
T PRK14706 252 FDGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDFH 299 (639)
T ss_pred cCCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 1211 0000011 2 257788888888888888886
No 76
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=53.24 E-value=69 Score=31.57 Aligned_cols=108 Identities=16% Similarity=0.206 Sum_probs=68.0
Q ss_pred HHHHHHHHHcCCC-ceeeccc-c-Cccc-cc-CCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHhhcCC
Q 015710 22 KEDIALVKQVGFD-SIRFSIS-W-SRIL-PH-GNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGG 96 (402)
Q Consensus 22 ~eDi~l~~~lG~~-~~R~si~-W-~ri~-P~-~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg 96 (402)
+|.+++|+++|++ .+=++++ - .++. .. + -.++ .+-+.+.++.++++||.+.+.+- +++|.
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~in---Kg~t---~~~~~~ai~~~~~~Gi~v~~~~i-~G~P~-------- 181 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGLETANDRIREKSIN---KGST---FEDFIRAAELARKYGAGVKAYLL-FKPPF-------- 181 (313)
T ss_pred HHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhC---CCCC---HHHHHHHHHHHHHcCCcEEEEEE-ecCCC--------
Confidence 6778999999987 4555552 1 1122 00 1 1122 35678999999999999776653 34552
Q ss_pred CCChhhHHHHHHHHHHHHHHhCCcceEEEeecCCCcccccccccCccCC
Q 015710 97 FLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVGECGYAKGTKAP 145 (402)
Q Consensus 97 ~~~~~~~~~f~~ya~~~~~~~g~~v~~w~t~NEp~~~~~~gy~~g~~~P 145 (402)
....+.++.+.+.++.+.. +++.|....+.=+|+.....-|..|.|.|
T Consensus 182 ~se~ea~ed~~~ti~~~~~-l~~~vs~~~l~v~~gT~l~~~~~~G~~~p 229 (313)
T TIGR01210 182 LSEKEAIADMISSIRKCIP-VTDTVSINPTNVQKGTLVEFLWNRGLYRP 229 (313)
T ss_pred CChhhhHHHHHHHHHHHHh-cCCcEEEECCEEeCCCHHHHHHHcCCCCC
Confidence 1223567777777777654 45788887777677764444455666655
No 77
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=53.00 E-value=25 Score=37.51 Aligned_cols=59 Identities=19% Similarity=0.385 Sum_probs=39.4
Q ss_pred hhchHHHHHHHHHcCCCceeec-c-c------cC-----cccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEcc
Q 015710 18 YFRYKEDIALVKQVGFDSIRFS-I-S------WS-----RILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF 82 (402)
Q Consensus 18 y~~~~eDi~l~~~lG~~~~R~s-i-~------W~-----ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~ 82 (402)
+.-..+-++-+|+||++++-+. | + |. -..|++. ....+=++++|++|.++||++|+.+.
T Consensus 110 ~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~------~G~~~e~k~lV~~aH~~Gi~VilD~V 181 (542)
T TIGR02402 110 FDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNA------YGGPDDLKALVDAAHGLGLGVILDVV 181 (542)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCccccccc------cCCHHHHHHHHHHHHHCCCEEEEEEc
Confidence 3444556899999999999776 3 1 21 0111111 11245589999999999999999753
No 78
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=52.91 E-value=19 Score=34.30 Aligned_cols=81 Identities=22% Similarity=0.232 Sum_probs=56.1
Q ss_pred HHHHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHhhcCCCCChh
Q 015710 22 KEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSPK 101 (402)
Q Consensus 22 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~ 101 (402)
.+|++.+.+.|++.+|+.++.|.+.-.... +.-..++++-..++++.++++|+++.+++ | + .+..+
T Consensus 72 ~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~-~~~~~~~~~~~~~~i~~a~~~G~~v~~~~-----~----~--~~~~~-- 137 (259)
T cd07939 72 KEDIEAALRCGVTAVHISIPVSDIHLAHKL-GKDRAWVLDQLRRLVGRAKDRGLFVSVGA-----E----D--ASRAD-- 137 (259)
T ss_pred HHHHHHHHhCCcCEEEEEEecCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHCCCeEEEee-----c----c--CCCCC--
Confidence 789999999999999999988876422110 22234667888999999999999887555 2 1 22222
Q ss_pred hHHHHHHHHHHHHHHhC
Q 015710 102 IVKDFGDYADLCFKEFG 118 (402)
Q Consensus 102 ~~~~f~~ya~~~~~~~g 118 (402)
.+...+.++.+.+ .|
T Consensus 138 -~~~~~~~~~~~~~-~G 152 (259)
T cd07939 138 -PDFLIEFAEVAQE-AG 152 (259)
T ss_pred -HHHHHHHHHHHHH-CC
Confidence 4566666666544 45
No 79
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=52.68 E-value=48 Score=34.74 Aligned_cols=55 Identities=22% Similarity=0.241 Sum_probs=40.8
Q ss_pred hhchHHH-----HHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCCCCc
Q 015710 18 YFRYKED-----IALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTP 87 (402)
Q Consensus 18 y~~~~eD-----i~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P 87 (402)
|..|.+| ++.+.+.|++.+|+.++-+.+ +-....|+.+++.|+....++.+-..|
T Consensus 89 ~~~~~dDvv~~fv~~A~~~Gvd~irif~~lnd~---------------~n~~~~i~~ak~~G~~v~~~i~~t~~p 148 (467)
T PRK14041 89 YRHYADDVVELFVKKVAEYGLDIIRIFDALNDI---------------RNLEKSIEVAKKHGAHVQGAISYTVSP 148 (467)
T ss_pred cccccchhhHHHHHHHHHCCcCEEEEEEeCCHH---------------HHHHHHHHHHHHCCCEEEEEEEeccCC
Confidence 5567888 899999999999999876543 224666788888888887777653334
No 80
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=52.07 E-value=49 Score=31.96 Aligned_cols=86 Identities=14% Similarity=0.161 Sum_probs=61.1
Q ss_pred HHHHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccC-CCCchhhHhhcCCCCCh
Q 015710 22 KEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFH-WDTPQALEDEYGGFLSP 100 (402)
Q Consensus 22 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H-~~~P~~l~~~~gg~~~~ 100 (402)
.+|++.+.+.|++.+++.++=|...-.... +.--.+.++...+.+..++++|+++.+++.. |+.|. +|-.
T Consensus 76 ~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~-~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~------~~~~-- 146 (274)
T cd07938 76 LRGAERALAAGVDEVAVFVSASETFSQKNI-NCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPY------EGEV-- 146 (274)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHHHHHHHc-CCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCC------CCCC--
Confidence 779999999999999999876654322110 2223456788999999999999999988763 55652 3322
Q ss_pred hhHHHHHHHHHHHHHHhC
Q 015710 101 KIVKDFGDYADLCFKEFG 118 (402)
Q Consensus 101 ~~~~~f~~ya~~~~~~~g 118 (402)
..+.+.++++.+.+ .|
T Consensus 147 -~~~~~~~~~~~~~~-~G 162 (274)
T cd07938 147 -PPERVAEVAERLLD-LG 162 (274)
T ss_pred -CHHHHHHHHHHHHH-cC
Confidence 46677777777654 44
No 81
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=51.84 E-value=30 Score=36.95 Aligned_cols=67 Identities=15% Similarity=0.223 Sum_probs=42.2
Q ss_pred hhhhchHHHHHHHHHcCCCceeeccccCccccc-CC-CCC--CCC--hhHHHHHHHHHHHHHHCCCeEEEEcc
Q 015710 16 NFYFRYKEDIALVKQVGFDSIRFSISWSRILPH-GN-ISG--GVN--QQGVDFYNNLINELISNGLTPFVTLF 82 (402)
Q Consensus 16 d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~-~~-~~g--~~n--~~~~~~y~~~i~~l~~~gi~p~vtL~ 82 (402)
.-+.-..+-++-+++||++++=++--...-.-. +- +.+ .+| ....+-++++|++++++||++|+++.
T Consensus 24 G~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v 96 (543)
T TIGR02403 24 GDLRGIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMV 96 (543)
T ss_pred cCHHHHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 345556777899999999998776322211000 00 000 011 12345689999999999999999863
No 82
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=51.17 E-value=1.5e+02 Score=33.13 Aligned_cols=101 Identities=19% Similarity=0.316 Sum_probs=61.4
Q ss_pred cCCCceeeccc-cCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCC---CCchh--hHhh-----------
Q 015710 31 VGFDSIRFSIS-WSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHW---DTPQA--LEDE----------- 93 (402)
Q Consensus 31 lG~~~~R~si~-W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~---~~P~~--l~~~----------- 93 (402)
+=++.+++++. |.+ .-+. -++|..-.---+.||+.|+++||+.++.+... |.|.. +.++
T Consensus 294 IP~d~~~lD~~~~~~--~~~~--F~wd~~~FP~pk~mi~~l~~~Gikl~~~i~P~i~~d~~~~~e~~~~Gy~~k~~~g~~ 369 (772)
T COG1501 294 IPLDVFVLDIDFWMD--NWGD--FTWDPDRFPDPKQMIAELHEKGIKLIVIINPYIKQDSPLFKEAIEKGYFVKDPDGEI 369 (772)
T ss_pred CcceEEEEeehhhhc--cccc--eEECcccCCCHHHHHHHHHhcCceEEEEeccccccCCchHHHHHHCCeEEECCCCCE
Confidence 45678999995 876 1111 23343333334699999999999999987642 33322 1110
Q ss_pred --------cCC---CCChhhHHHHHHHHHHHHHHhCCcceEEEeecCCCccccc
Q 015710 94 --------YGG---FLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVGEC 136 (402)
Q Consensus 94 --------~gg---~~~~~~~~~f~~ya~~~~~~~g~~v~~w~t~NEp~~~~~~ 136 (402)
.++ |+||+..+.|.+....-+..+| -.-+|.=+|||.+....
T Consensus 370 ~~~~~w~~~~a~~DFtnp~~r~Ww~~~~~~~l~d~G-v~g~W~D~nEp~~~~~~ 422 (772)
T COG1501 370 YQADFWPGNSAFPDFTNPDAREWWASDKKKNLLDLG-VDGFWNDMNEPEPFDGD 422 (772)
T ss_pred eeecccCCcccccCCCCHHHHHHHHHHHHhHHHhcC-ccEEEccCCCCcccccc
Confidence 011 6889999988873333233333 24677779999986544
No 83
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=50.85 E-value=47 Score=34.82 Aligned_cols=55 Identities=20% Similarity=0.273 Sum_probs=41.7
Q ss_pred hhchHHH-----HHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCCCCc
Q 015710 18 YFRYKED-----IALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTP 87 (402)
Q Consensus 18 y~~~~eD-----i~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P 87 (402)
|..|.+| ++++++.|++.+|+.-....+ +-....|+.+++.|....+++++=+.|
T Consensus 99 y~~ypddvv~~fv~~a~~~Gidi~Rifd~lnd~---------------~n~~~ai~~ak~~G~~~~~~i~yt~sp 158 (468)
T PRK12581 99 YRHYADDIVDKFISLSAQNGIDVFRIFDALNDP---------------RNIQQALRAVKKTGKEAQLCIAYTTSP 158 (468)
T ss_pred ccCCcchHHHHHHHHHHHCCCCEEEEcccCCCH---------------HHHHHHHHHHHHcCCEEEEEEEEEeCC
Confidence 6677888 899999999999987543211 235677888888888888888776656
No 84
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=50.71 E-value=50 Score=35.71 Aligned_cols=50 Identities=18% Similarity=0.193 Sum_probs=33.0
Q ss_pred hhchHHH-----HHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEcc
Q 015710 18 YFRYKED-----IALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF 82 (402)
Q Consensus 18 y~~~~eD-----i~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~ 82 (402)
|.+|.+| +++.++.|++.+|++.+.+.+ +-....|+.++++|....++++
T Consensus 91 ~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~---------------~~~~~ai~~ak~~G~~~~~~i~ 145 (593)
T PRK14040 91 YRHYADDVVERFVERAVKNGMDVFRVFDAMNDP---------------RNLETALKAVRKVGAHAQGTLS 145 (593)
T ss_pred cccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcH---------------HHHHHHHHHHHHcCCeEEEEEE
Confidence 5566665 999999999999999765443 1234555566666665544443
No 85
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=50.01 E-value=26 Score=33.63 Aligned_cols=60 Identities=15% Similarity=0.168 Sum_probs=45.7
Q ss_pred HHHHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEcc
Q 015710 22 KEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF 82 (402)
Q Consensus 22 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~ 82 (402)
.+|++.+.+.|++.+|+.++=|...-.... +.=-.+.++...++|..++++|+++.+++-
T Consensus 74 ~~di~~a~~~g~~~i~i~~~~S~~~~~~~~-~~~~~e~~~~~~~~i~~a~~~G~~v~~~~e 133 (262)
T cd07948 74 MDDARIAVETGVDGVDLVFGTSPFLREASH-GKSITEIIESAVEVIEFVKSKGIEVRFSSE 133 (262)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 679999999999999999876554322110 222246688899999999999999998883
No 86
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=49.99 E-value=39 Score=37.56 Aligned_cols=102 Identities=11% Similarity=0.149 Sum_probs=57.4
Q ss_pred hhhchH-HHHHHHHHcCCCceeeccccCcc-------cccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccC--CCC
Q 015710 17 FYFRYK-EDIALVKQVGFDSIRFSISWSRI-------LPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFH--WDT 86 (402)
Q Consensus 17 ~y~~~~-eDi~l~~~lG~~~~R~si~W~ri-------~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H--~~~ 86 (402)
.|.-.. +-+.-+|+||++++=+.--...- .|.....-.......+-+.++|++|.++||.+|+.+.+ +.-
T Consensus 248 ty~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~Gtp~dlk~LVd~aH~~GI~VilDvV~nH~~~ 327 (758)
T PLN02447 248 SYREFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRSGTPEDLKYLIDKAHSLGLRVLMDVVHSHASK 327 (758)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEeccccccc
Confidence 454433 34899999999999876221110 01100000001112345799999999999999998654 211
Q ss_pred -------------chhhHhhcCC----C-------CChhhHHHHHHHHHHHHHHhC
Q 015710 87 -------------PQALEDEYGG----F-------LSPKIVKDFGDYADLCFKEFG 118 (402)
Q Consensus 87 -------------P~~l~~~~gg----~-------~~~~~~~~f~~ya~~~~~~~g 118 (402)
+.++.....| | .++++...+.+=++.-+++|+
T Consensus 328 ~~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey~ 383 (758)
T PLN02447 328 NTLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEEYK 383 (758)
T ss_pred cccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 1232211011 2 345667777777777777775
No 87
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=49.36 E-value=31 Score=33.26 Aligned_cols=54 Identities=13% Similarity=0.089 Sum_probs=39.0
Q ss_pred HHHHHHHHHcCCCceeeccccCc--ccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEc
Q 015710 22 KEDIALVKQVGFDSIRFSISWSR--ILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (402)
Q Consensus 22 ~eDi~l~~~lG~~~~R~si~W~r--i~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 81 (402)
+|.++.||++|++.+-++++ .. +.+.- .+.. .++.+.+.++.++++||.+.+++
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E-~~~~~~~~i--~~~~---s~~~~~~ai~~l~~~Gi~v~~~~ 178 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLD-TSQEFYSNI--ISTH---TYDDRVDTLENAKKAGLKVCSGG 178 (296)
T ss_pred HHHHHHHHHcCCCEEEEccc-CCHHHHhhc--cCCC---CHHHHHHHHHHHHHcCCEEEEeE
Confidence 78899999999999999988 31 22221 1222 34667889999999999865543
No 88
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=49.28 E-value=84 Score=31.29 Aligned_cols=59 Identities=19% Similarity=0.437 Sum_probs=49.7
Q ss_pred HHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCCCCc
Q 015710 24 DIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTP 87 (402)
Q Consensus 24 Di~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P 87 (402)
+++.+|++|.+++.|=+-|. |++. ..+|..-.++.+++..+|++.||--++-+..+|.+
T Consensus 112 s~~rike~GadavK~Llyy~---pD~~--~ein~~k~a~vervg~eC~a~dipf~lE~l~Yd~~ 170 (329)
T PRK04161 112 SVKRLKEAGADAVKFLLYYD---VDGD--EEINDQKQAYIERIGSECTAEDIPFFLELLTYDER 170 (329)
T ss_pred hHHHHHHhCCCeEEEEEEEC---CCCC--HHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCc
Confidence 57899999999999999886 5542 56788888999999999999999999988765443
No 89
>TIGR02630 xylose_isom_A xylose isomerase. Members of this family are the enzyme xylose isomerase (5.3.1.5), which interconverts D-xylose and D-xylulose.
Probab=48.43 E-value=3.1e+02 Score=28.36 Aligned_cols=86 Identities=17% Similarity=0.257 Sum_probs=51.7
Q ss_pred HHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHH----HHHHHHHHCCCeEEE-EccCCCCchhhHhhcCCCCC
Q 015710 25 IALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYN----NLINELISNGLTPFV-TLFHWDTPQALEDEYGGFLS 99 (402)
Q Consensus 25 i~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~----~~i~~l~~~gi~p~v-tL~H~~~P~~l~~~~gg~~~ 99 (402)
++.|.+||+..|=|- =..|.|++ .... +..+-.+ .+-+.+.+-||+.++ |..-|..|.... |+++|
T Consensus 84 Fef~~kLg~~~~~FH--D~D~~peg---~~~~-E~~~~l~~i~~~~k~~~~~tGikllw~TanlFs~prf~~---GA~Tn 154 (434)
T TIGR02630 84 FEFFEKLGVPYYCFH--DRDIAPEG---ASLR-ETNANLDEIVDLIKEKQKETGVKLLWGTANLFSHPRYMH---GAATS 154 (434)
T ss_pred HHHHHHhCCCeeccC--ccccCCCC---CCHH-HHHHHHHHHHHHHHHHHHhhCceeeeecCCccCCccccC---CcCCC
Confidence 577999999886543 34567776 2222 2212233 344455677999766 566789998753 89998
Q ss_pred hhhHHHHHHHHHH------HHHHhCCc
Q 015710 100 PKIVKDFGDYADL------CFKEFGDR 120 (402)
Q Consensus 100 ~~~~~~f~~ya~~------~~~~~g~~ 120 (402)
++ .+.|+.-++. +.+++|..
T Consensus 155 Pd-~~Vra~A~~qvk~alD~~~eLGge 180 (434)
T TIGR02630 155 PD-ADVFAYAAAQVKKALEVTKKLGGE 180 (434)
T ss_pred CC-HHHHHHHHHHHHHHHHHHHHhCCC
Confidence 76 2333333333 25667753
No 90
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=48.43 E-value=72 Score=31.98 Aligned_cols=52 Identities=17% Similarity=0.381 Sum_probs=43.7
Q ss_pred HHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEc
Q 015710 25 IALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (402)
Q Consensus 25 i~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 81 (402)
++.++++|.+++-+-+-|. |+.. ...|..-+++..++.++|.+.||..++-+
T Consensus 112 ve~a~~~GAdAVk~lv~~~---~d~~--~~~~~~~~~~l~rv~~ec~~~giPlllE~ 163 (340)
T PRK12858 112 VRRIKEAGADAVKLLLYYR---PDED--DAINDRKHAFVERVGAECRANDIPFFLEP 163 (340)
T ss_pred HHHHHHcCCCEEEEEEEeC---CCcc--hHHHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 6789999999999999997 4431 34577888999999999999999998864
No 91
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=48.06 E-value=45 Score=33.59 Aligned_cols=81 Identities=17% Similarity=0.151 Sum_probs=56.3
Q ss_pred HHHHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHhhcCCCCChh
Q 015710 22 KEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSPK 101 (402)
Q Consensus 22 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~ 101 (402)
.+|++.+.+.|++.+|+.++-|.+.-.... +.-..+.++...+.|+.++++|+++.+++ + + ++..+
T Consensus 75 ~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~-~~s~~e~l~~~~~~i~~ak~~g~~v~~~~-----e----d--~~r~~-- 140 (365)
T TIGR02660 75 DADIEAAARCGVDAVHISIPVSDLQIEAKL-RKDRAWVLERLARLVSFARDRGLFVSVGG-----E----D--ASRAD-- 140 (365)
T ss_pred HHHHHHHHcCCcCEEEEEEccCHHHHHHHh-CcCHHHHHHHHHHHHHHHHhCCCEEEEee-----c----C--CCCCC--
Confidence 789999999999999999988765332110 22234567888999999999999977654 2 1 23233
Q ss_pred hHHHHHHHHHHHHHHhC
Q 015710 102 IVKDFGDYADLCFKEFG 118 (402)
Q Consensus 102 ~~~~f~~ya~~~~~~~g 118 (402)
.+.+.++++.+.+ .|
T Consensus 141 -~~~l~~~~~~~~~-~G 155 (365)
T TIGR02660 141 -PDFLVELAEVAAE-AG 155 (365)
T ss_pred -HHHHHHHHHHHHH-cC
Confidence 5666677776544 55
No 92
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=47.87 E-value=90 Score=31.02 Aligned_cols=58 Identities=16% Similarity=0.380 Sum_probs=48.9
Q ss_pred HHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCCCCc
Q 015710 25 IALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTP 87 (402)
Q Consensus 25 i~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P 87 (402)
++.+|++|.+++.|=+-|. |++. ..+|..-.++.+++..+|++.+|--++-+..++.+
T Consensus 111 ~~rike~GadavK~Llyy~---pD~~--~~in~~k~a~vervg~eC~a~dipf~lE~ltY~~~ 168 (324)
T PRK12399 111 AKRIKEEGADAVKFLLYYD---VDEP--DEINEQKKAYIERIGSECVAEDIPFFLEILTYDEK 168 (324)
T ss_pred HHHHHHhCCCeEEEEEEEC---CCCC--HHHHHHHHHHHHHHHHHHHHCCCCeEEEEeeccCc
Confidence 7899999999999999886 5542 56888888999999999999999999887655543
No 93
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=47.41 E-value=66 Score=30.12 Aligned_cols=68 Identities=19% Similarity=0.208 Sum_probs=42.5
Q ss_pred hhhchHHHHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEE-ccCCCCc
Q 015710 17 FYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVT-LFHWDTP 87 (402)
Q Consensus 17 ~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vt-L~H~~~P 87 (402)
+-+.+++=++++++||.+.+++...+. |......+.....++...++.+.+.+.||...+= +++++.|
T Consensus 82 ~~~~~~~~i~~a~~lg~~~i~~~~g~~---~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~~~~~ 150 (254)
T TIGR03234 82 FREGVALAIAYARALGCPQVNCLAGKR---PAGVSPEEARATLVENLRYAADALDRIGLTLLIEPINSFDMP 150 (254)
T ss_pred HHHHHHHHHHHHHHhCCCEEEECcCCC---CCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCcccCC
Confidence 345667778999999999988643321 1110001122334566788888889999998874 3445544
No 94
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=46.92 E-value=52 Score=31.29 Aligned_cols=74 Identities=18% Similarity=0.212 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHCCCeEEEEccCC--------------CCchhhHhh----------------c-CC---CCChh---hH
Q 015710 61 DFYNNLINELISNGLTPFVTLFHW--------------DTPQALEDE----------------Y-GG---FLSPK---IV 103 (402)
Q Consensus 61 ~~y~~~i~~l~~~gi~p~vtL~H~--------------~~P~~l~~~----------------~-gg---~~~~~---~~ 103 (402)
+.++.+|+.-+++|.++|+||.=- ..|.|-..+ . ++ -.+|+ ..
T Consensus 24 ~~~~~f~~~~~~~ga~~m~T~pm~G~Vakd~~~~~~~~~fp~~~y~~Q~~~d~~~~~~Gng~~~~~~~~~~~~P~~~~~~ 103 (239)
T PF12891_consen 24 DVADTFIDQNLAAGAYSMMTLPMIGYVAKDANSVSESESFPSWRYGPQQWFDPWNPDCGNGVKPDKTALTSNDPDTPDNP 103 (239)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE--SSEEES-BSEGBGGGTSSSTTEEEBS-EETTEEEEE-SEESTSSS--SSSGGSSSSE
T ss_pred HHHHHHHHHhhhcCcceeEeecccceEecCCCCcccccCCChhhcccccccCcCcCCCCccccCCCCCCCCCCCCCCccH
Confidence 568999999999999999998621 122221110 0 11 12343 11
Q ss_pred HHHHHHHHHHHHHhCCc-----ceEEEeecCCCccc
Q 015710 104 KDFGDYADLCFKEFGDR-----VKHWITLNEPETVG 134 (402)
Q Consensus 104 ~~f~~ya~~~~~~~g~~-----v~~w~t~NEp~~~~ 134 (402)
..-.+++..+..+||.. |++|..-|||.+..
T Consensus 104 ~y~~ewV~~l~~~~g~a~~~~gvk~y~lDNEP~LW~ 139 (239)
T PF12891_consen 104 VYMDEWVNYLVNKYGNASTNGGVKYYSLDNEPDLWH 139 (239)
T ss_dssp EEHHHHHHHHHHHH--TTSTTS--EEEESS-GGGHH
T ss_pred hHHHHHHHHHHHHHhccccCCCceEEEecCchHhhc
Confidence 23345677778888764 99999999999643
No 95
>PRK05474 xylose isomerase; Provisional
Probab=45.75 E-value=3.5e+02 Score=28.10 Aligned_cols=87 Identities=15% Similarity=0.241 Sum_probs=52.3
Q ss_pred HHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHH----HHHHHHCCCeEEE-EccCCCCchhhHhhcCCCC
Q 015710 24 DIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNL----INELISNGLTPFV-TLFHWDTPQALEDEYGGFL 98 (402)
Q Consensus 24 Di~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~----i~~l~~~gi~p~v-tL~H~~~P~~l~~~~gg~~ 98 (402)
=++.+.+||+..|=|- =..|.|++ .... +..+..+++ -+.+.+-||+.++ |..-|..|.... |+++
T Consensus 84 afe~~~kLg~~~~~FH--D~D~~peg---~s~~-E~~~~l~~i~~~~k~~~~~tGikllw~TanlFs~prf~~---GA~T 154 (437)
T PRK05474 84 AFEFFTKLGVPYYCFH--DVDVAPEG---ASLK-EYNANLDEIVDYLKEKQAETGVKLLWGTANLFSNPRYMA---GAAT 154 (437)
T ss_pred HHHHHHHhCCCeeccC--ccccCCCC---CCHH-HHHHHHHHHHHHHHHHHHhhCCeeeeeccCccCCccccC---CcCC
Confidence 3677999999986553 34567776 2222 222233444 4455677998765 666789998753 8999
Q ss_pred ChhhHHHHHHHHHH------HHHHhCCc
Q 015710 99 SPKIVKDFGDYADL------CFKEFGDR 120 (402)
Q Consensus 99 ~~~~~~~f~~ya~~------~~~~~g~~ 120 (402)
|++ .+.|+.-++. +.+++|..
T Consensus 155 npd-~~Vra~A~~qvk~alD~~~eLGge 181 (437)
T PRK05474 155 NPD-PDVFAYAAAQVKTALDATKRLGGE 181 (437)
T ss_pred CCC-HHHHHHHHHHHHHHHHHHHHhCCC
Confidence 876 2333333333 25667753
No 96
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=45.61 E-value=1.1e+02 Score=30.61 Aligned_cols=106 Identities=13% Similarity=0.210 Sum_probs=59.6
Q ss_pred HHHHHHcCC--CceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCC-CCchhhHhh--cCCCCC
Q 015710 25 IALVKQVGF--DSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHW-DTPQALEDE--YGGFLS 99 (402)
Q Consensus 25 i~l~~~lG~--~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~-~~P~~l~~~--~gg~~~ 99 (402)
++.+++.++ +++=+.|.|..-. + .-.+|.+..---.+++++|++.|++.++.+.-+ ..-...... +--|.|
T Consensus 30 ~~~~r~~~IP~D~i~lDidy~~~~--~--~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~~g~~~~~~~~~pDftn 105 (332)
T cd06601 30 VEGYRDNNIPLDGLHVDVDFQDNY--R--TFTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVISYGGGLGSPGLYPDLGR 105 (332)
T ss_pred HHHHHHcCCCCceEEEcCchhcCC--C--ceeecCCCCCCHHHHHHHHHHCCCeEEEEecCceecCccCCCCceeeCCCC
Confidence 455665565 4555666664221 1 123343333334789999999999988765411 110000000 112678
Q ss_pred hhhHHHHHHHHHHHHHHhCCcceEEEeecCCCccccc
Q 015710 100 PKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVGEC 136 (402)
Q Consensus 100 ~~~~~~f~~ya~~~~~~~g~~v~~w~t~NEp~~~~~~ 136 (402)
++..+.|.+..+.+.+ .|- .-+|+=+|||.+++..
T Consensus 106 p~ar~wW~~~~~~l~~-~Gv-~~~W~DmnEp~~~~~~ 140 (332)
T cd06601 106 PDVREWWGNQYKYLFD-IGL-EFVWQDMTTPAIMPSY 140 (332)
T ss_pred HHHHHHHHHHHHHHHh-CCC-ceeecCCCCcccccCC
Confidence 8888887766554332 232 2478889999987543
No 97
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=45.12 E-value=77 Score=32.92 Aligned_cols=106 Identities=13% Similarity=0.099 Sum_probs=62.2
Q ss_pred hHHHHHHHHHcCCCceeecc-ccCc-ccccCCCCCCCChhHHHHHHHHHHHHHHCC-CeEEEEccCCCCchhhHhhcCCC
Q 015710 21 YKEDIALVKQVGFDSIRFSI-SWSR-ILPHGNISGGVNQQGVDFYNNLINELISNG-LTPFVTLFHWDTPQALEDEYGGF 97 (402)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si-~W~r-i~P~~~~~g~~n~~~~~~y~~~i~~l~~~g-i~p~vtL~H~~~P~~l~~~~gg~ 97 (402)
-+|.+++|+++|+|.+-+++ +-+. +...- |... ..+-..+.|+.+++.| +.+.++|- +++|.
T Consensus 162 t~e~l~~l~~aGvnRiSiGVQSf~d~vLk~l---gR~~--~~~~~~~~i~~l~~~g~~~v~~DlI-~GlPg--------- 226 (449)
T PRK09058 162 DDEKADAALDAGANRFSIGVQSFNTQVRRRA---GRKD--DREEVLARLEELVARDRAAVVCDLI-FGLPG--------- 226 (449)
T ss_pred CHHHHHHHHHcCCCEEEecCCcCCHHHHHHh---CCCC--CHHHHHHHHHHHHhCCCCcEEEEEE-eeCCC---------
Confidence 36779999999999888877 3321 11111 2221 1244577899999999 66666664 46663
Q ss_pred CChhhHHHHHHHHHHHHHHhCCcceEEEeecCCCcccccccccCccC
Q 015710 98 LSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVGECGYAKGTKA 144 (402)
Q Consensus 98 ~~~~~~~~f~~ya~~~~~~~g~~v~~w~t~NEp~~~~~~gy~~g~~~ 144 (402)
.+ .+.|.+=.+.+.+-=-+.|..+...-||.......+..|..+
T Consensus 227 qT---~e~~~~~l~~~~~l~~~~is~y~L~~~pgT~l~~~~~~g~l~ 270 (449)
T PRK09058 227 QT---PEIWQQDLAIVRDLGLDGVDLYALNLLPGTPLAKAVEKGKLP 270 (449)
T ss_pred CC---HHHHHHHHHHHHhcCCCEEEEeccccCCCCHHHHHHHcCCCC
Confidence 22 233334344444332367888888888886543333334443
No 98
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=45.06 E-value=67 Score=32.15 Aligned_cols=92 Identities=13% Similarity=0.221 Sum_probs=52.6
Q ss_pred hHHHHHHHHHcCCCceeeccc-cC-cccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEE-EEccCCCCchhhHhhcCCC
Q 015710 21 YKEDIALVKQVGFDSIRFSIS-WS-RILPHGNISGGVNQQGVDFYNNLINELISNGLTPF-VTLFHWDTPQALEDEYGGF 97 (402)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~-W~-ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~-vtL~H~~~P~~l~~~~gg~ 97 (402)
-++.++.|+++|++.+-+++. -+ .+...- |.. -..+-+.+.|+.+++.|+.++ +.| -+++|.
T Consensus 99 t~e~l~~l~~~Gv~risiGvqS~~~~~l~~l---gR~--~~~~~~~~ai~~l~~~G~~~v~~dl-i~GlPg--------- 163 (360)
T TIGR00539 99 TAEWCKGLKGAGINRLSLGVQSFRDDKLLFL---GRQ--HSAKNIAPAIETALKSGIENISLDL-MYGLPL--------- 163 (360)
T ss_pred CHHHHHHHHHcCCCEEEEecccCChHHHHHh---CCC--CCHHHHHHHHHHHHHcCCCeEEEec-cCCCCC---------
Confidence 367799999999996666653 32 222111 221 123557889999999999755 444 346663
Q ss_pred CChhhHHHHHHHHHHHHHHhC-CcceEEEeecCCC
Q 015710 98 LSPKIVKDFGDYADLCFKEFG-DRVKHWITLNEPE 131 (402)
Q Consensus 98 ~~~~~~~~f~~ya~~~~~~~g-~~v~~w~t~NEp~ 131 (402)
.+ .+.+.+-.+.+.+ ++ +.+..+...=||.
T Consensus 164 qt---~~~~~~~l~~~~~-l~~~~is~y~l~~~~g 194 (360)
T TIGR00539 164 QT---LNSLKEELKLAKE-LPINHLSAYALSVEPN 194 (360)
T ss_pred CC---HHHHHHHHHHHHc-cCCCEEEeecceEcCC
Confidence 23 3444444554443 44 3455555444554
No 99
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=44.47 E-value=55 Score=35.03 Aligned_cols=63 Identities=14% Similarity=0.306 Sum_probs=42.7
Q ss_pred hhhhchHHHHHHHHHcCCCceeeccccCcccccCCCCCCCC----------hhHHHHHHHHHHHHHHCCCeEEEEcc
Q 015710 16 NFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVN----------QQGVDFYNNLINELISNGLTPFVTLF 82 (402)
Q Consensus 16 d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n----------~~~~~~y~~~i~~l~~~gi~p~vtL~ 82 (402)
+-+.-..+.++-+++||++++=++--+.. |.. +..++ ....+-++++|+++.++||++|+.+.
T Consensus 30 Gdl~gi~~~ldyl~~lGv~~i~l~P~~~~--~~~--~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V 102 (551)
T PRK10933 30 GDLRGVTQRLDYLQKLGVDAIWLTPFYVS--PQV--DNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMV 102 (551)
T ss_pred cCHHHHHHhhHHHHhCCCCEEEECCCCCC--CCC--CCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 33555667899999999999988733211 211 01111 11345689999999999999999763
No 100
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=43.84 E-value=60 Score=32.89 Aligned_cols=59 Identities=17% Similarity=0.169 Sum_probs=46.2
Q ss_pred HHHHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEc
Q 015710 22 KEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (402)
Q Consensus 22 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 81 (402)
++|++.+.+.|++.+|++++-|.+.-.... +.--.+.++...+.|+.+++.|+++.++.
T Consensus 78 ~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~-~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ 136 (378)
T PRK11858 78 KSDIDASIDCGVDAVHIFIATSDIHIKHKL-KKTREEVLERMVEAVEYAKDHGLYVSFSA 136 (378)
T ss_pred HHHHHHHHhCCcCEEEEEEcCCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 789999999999999999987776332111 22335678889999999999999988774
No 101
>PRK09505 malS alpha-amylase; Reviewed
Probab=43.76 E-value=38 Score=37.29 Aligned_cols=62 Identities=18% Similarity=0.325 Sum_probs=40.4
Q ss_pred hHHHHHHHHHcCCCceeeccccCccc-----------ccCCCCC-------CCC--hhHHHHHHHHHHHHHHCCCeEEEE
Q 015710 21 YKEDIALVKQVGFDSIRFSISWSRIL-----------PHGNISG-------GVN--QQGVDFYNNLINELISNGLTPFVT 80 (402)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~W~ri~-----------P~~~~~g-------~~n--~~~~~~y~~~i~~l~~~gi~p~vt 80 (402)
..+-++-+++||++++=++--...+. |.-..-| .+| ....+=++++|+++.++||++|+.
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 45568899999999998884333321 1000000 111 223566899999999999999997
Q ss_pred cc
Q 015710 81 LF 82 (402)
Q Consensus 81 L~ 82 (402)
+.
T Consensus 312 ~V 313 (683)
T PRK09505 312 VV 313 (683)
T ss_pred EC
Confidence 53
No 102
>PRK03705 glycogen debranching enzyme; Provisional
Probab=42.99 E-value=53 Score=35.99 Aligned_cols=57 Identities=16% Similarity=0.360 Sum_probs=36.8
Q ss_pred HHHHHHcCCCceeec-c-ccC---c-----------------ccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEcc
Q 015710 25 IALVKQVGFDSIRFS-I-SWS---R-----------------ILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF 82 (402)
Q Consensus 25 i~l~~~lG~~~~R~s-i-~W~---r-----------------i~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~ 82 (402)
|+-||+||++++=+. | +-. + ..|++.. |.-....++=+++||++|.++||++|+.+.
T Consensus 185 LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~y-gt~~~~~~~efk~LV~~~H~~GI~VIlDvV 263 (658)
T PRK03705 185 IAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAY-ASGPETALDEFRDAVKALHKAGIEVILDVV 263 (658)
T ss_pred hHHHHHcCCCEEEecCcccCCCcccccccccccccCccccccccccccc-CCCCcchHHHHHHHHHHHHHCCCEEEEEEc
Confidence 889999999998775 2 111 0 1122111 111112356689999999999999999753
No 103
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=42.92 E-value=1.9e+02 Score=28.52 Aligned_cols=113 Identities=12% Similarity=0.089 Sum_probs=60.0
Q ss_pred hHHHHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCC---CCchhhH--hh--
Q 015710 21 YKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHW---DTPQALE--DE-- 93 (402)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~---~~P~~l~--~~-- 93 (402)
..+-++.+++.|+..==+-|+|.-....+--+-.+|.+..---.++|+.|+++|+++++.+.-+ +.+.+-. ++
T Consensus 26 v~~~~~~~~~~~iP~d~i~lD~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~~~~~~y~e~~~~g~ 105 (319)
T cd06591 26 LLDVAKEYRKRGIPLDVIVQDWFYWPKQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPTFGPETENYKEMDEKGY 105 (319)
T ss_pred HHHHHHHHHHhCCCccEEEEechhhcCCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCcCCCChhHHHHHHCCE
Confidence 3445677887766544344443211111100012344443445899999999999998876432 1121100 00
Q ss_pred -----c-----------CC---CCChhhHHHHHHHHHHHHHHhCCcceEEEeecCCCccc
Q 015710 94 -----Y-----------GG---FLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVG 134 (402)
Q Consensus 94 -----~-----------gg---~~~~~~~~~f~~ya~~~~~~~g~~v~~w~t~NEp~~~~ 134 (402)
. ++ |+||+..+.|....+..+...|- --+|+=+|||..+.
T Consensus 106 ~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gv-dg~w~D~~Ep~~~~ 164 (319)
T cd06591 106 LIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWKQLKKNYYDKGV-DAWWLDAAEPEYSV 164 (319)
T ss_pred EEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHHHHHHHhhcCCC-cEEEecCCCCCccC
Confidence 0 12 57788777776655444433331 34566699998653
No 104
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=42.91 E-value=1.4e+02 Score=28.82 Aligned_cols=70 Identities=10% Similarity=0.007 Sum_probs=49.0
Q ss_pred hHHHHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHhhcCCCCCh
Q 015710 21 YKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSP 100 (402)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~ 100 (402)
-++|+++..+.|++.+|+++..+.+ +...+.++.++++|+++.+++.--+ ++ +
T Consensus 93 ~~~di~~~~~~g~~~iri~~~~~~~---------------~~~~~~i~~ak~~G~~v~~~i~~~~---------~~---~ 145 (275)
T cd07937 93 VELFVEKAAKNGIDIFRIFDALNDV---------------RNLEVAIKAVKKAGKHVEGAICYTG---------SP---V 145 (275)
T ss_pred HHHHHHHHHHcCCCEEEEeecCChH---------------HHHHHHHHHHHHCCCeEEEEEEecC---------CC---C
Confidence 4778999999999999998765442 4467889999999999887662101 11 2
Q ss_pred hhHHHHHHHHHHHHHHhC
Q 015710 101 KIVKDFGDYADLCFKEFG 118 (402)
Q Consensus 101 ~~~~~f~~ya~~~~~~~g 118 (402)
...+.+.++++.+.+ .|
T Consensus 146 ~~~~~~~~~~~~~~~-~G 162 (275)
T cd07937 146 HTLEYYVKLAKELED-MG 162 (275)
T ss_pred CCHHHHHHHHHHHHH-cC
Confidence 235666777777654 44
No 105
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=42.26 E-value=74 Score=30.04 Aligned_cols=74 Identities=12% Similarity=0.162 Sum_probs=45.4
Q ss_pred eccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHhhcCCCCChhhHHHHHHHHHHHHHHh
Q 015710 38 FSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSPKIVKDFGDYADLCFKEF 117 (402)
Q Consensus 38 ~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~ 117 (402)
+.+.|..+.++|.. .... .......+++.++++|+++++.+..++...... -..+++..+.|++=+-..++++
T Consensus 26 v~~~f~~i~~~G~l--~~~~-~~~~~~~~~~~~~~~~~kvl~sigg~~~~~~~~----~~~~~~~r~~fi~~lv~~~~~~ 98 (253)
T cd06545 26 INLAFANPDANGTL--NANP-VRSELNSVVNAAHAHNVKILISLAGGSPPEFTA----ALNDPAKRKALVDKIINYVVSY 98 (253)
T ss_pred EEEEEEEECCCCeE--EecC-cHHHHHHHHHHHHhCCCEEEEEEcCCCCCcchh----hhcCHHHHHHHHHHHHHHHHHh
Confidence 44567677665431 1111 123467889999999999999997655432111 1245666777766666666666
Q ss_pred C
Q 015710 118 G 118 (402)
Q Consensus 118 g 118 (402)
+
T Consensus 99 ~ 99 (253)
T cd06545 99 N 99 (253)
T ss_pred C
Confidence 5
No 106
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=42.08 E-value=1e+02 Score=32.06 Aligned_cols=51 Identities=16% Similarity=0.141 Sum_probs=39.3
Q ss_pred HHHHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCCCCc
Q 015710 22 KEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTP 87 (402)
Q Consensus 22 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P 87 (402)
++|++.+.+.|++.+|+.++-+.+. | ....|+.++++|+.+.+++..-+-|
T Consensus 99 ~~~v~~A~~~Gvd~irif~~lnd~~---------n------~~~~v~~ak~~G~~v~~~i~~t~~p 149 (448)
T PRK12331 99 ESFVQKSVENGIDIIRIFDALNDVR---------N------LETAVKATKKAGGHAQVAISYTTSP 149 (448)
T ss_pred HHHHHHHHHCCCCEEEEEEecCcHH---------H------HHHHHHHHHHcCCeEEEEEEeecCC
Confidence 5667999999999999998765541 1 4568889999999888877665545
No 107
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=42.07 E-value=49 Score=35.87 Aligned_cols=99 Identities=13% Similarity=0.166 Sum_probs=59.4
Q ss_pred hhchHHHH-HHHHHcCCCceeec-cccCcc------cccCCCCCCC--ChhHHHHHHHHHHHHHHCCCeEEEEcc--CCC
Q 015710 18 YFRYKEDI-ALVKQVGFDSIRFS-ISWSRI------LPHGNISGGV--NQQGVDFYNNLINELISNGLTPFVTLF--HWD 85 (402)
Q Consensus 18 y~~~~eDi-~l~~~lG~~~~R~s-i~W~ri------~P~~~~~g~~--n~~~~~~y~~~i~~l~~~gi~p~vtL~--H~~ 85 (402)
|.-..+.+ +-+|+||++++=+. |..+.- .|... -.+ .....+=+.++|++|.++||++|+.+. |..
T Consensus 155 ~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y--~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V~NH~~ 232 (613)
T TIGR01515 155 YRELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGY--YAPTSRFGTPDDFMYFVDACHQAGIGVILDWVPGHFP 232 (613)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccC--cccccccCCHHHHHHHHHHHHHCCCEEEEEecccCcC
Confidence 33344554 88999999999885 543311 00000 000 111234579999999999999999854 532
Q ss_pred C-----------chhhHhh-----cCCC-------CChhhHHHHHHHHHHHHHHhC
Q 015710 86 T-----------PQALEDE-----YGGF-------LSPKIVKDFGDYADLCFKEFG 118 (402)
Q Consensus 86 ~-----------P~~l~~~-----~gg~-------~~~~~~~~f~~ya~~~~~~~g 118 (402)
. |.+.... ...| .++++.+.+.+-++..++.|+
T Consensus 233 ~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~ 288 (613)
T TIGR01515 233 KDDHGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYH 288 (613)
T ss_pred CccchhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 1 1111100 0112 357788888888888888886
No 108
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=41.80 E-value=98 Score=30.30 Aligned_cols=64 Identities=14% Similarity=0.193 Sum_probs=45.9
Q ss_pred hHHHHHHHHHcCCCceeecc----ccCcccccCCC-CCCCChhHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhH
Q 015710 21 YKEDIALVKQVGFDSIRFSI----SWSRILPHGNI-SGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALE 91 (402)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si----~W~ri~P~~~~-~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~ 91 (402)
.++=|++|+.+|+|.+-+=+ .+.. .|.-.. +|.+..+. ++++++-++++||++|..+ |.|..+.
T Consensus 19 lk~~id~ma~~k~N~l~lhl~D~f~~~~-~p~~~~~~~~yT~~e---i~ei~~yA~~~gI~vIPei---d~pGH~~ 87 (301)
T cd06565 19 LKKLLRLLALLGANGLLLYYEDTFPYEG-EPEVGRMRGAYTKEE---IREIDDYAAELGIEVIPLI---QTLGHLE 87 (301)
T ss_pred HHHHHHHHHHcCCCEEEEEEecceecCC-CcccccCCCCcCHHH---HHHHHHHHHHcCCEEEecC---CCHHHHH
Confidence 56779999999999887744 3322 222110 26677654 5999999999999999887 7776653
No 109
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=41.41 E-value=77 Score=30.97 Aligned_cols=65 Identities=14% Similarity=0.297 Sum_probs=46.9
Q ss_pred hHHHHHHHHHcCCCceeeccc----cCc---ccccC----------CCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccC
Q 015710 21 YKEDIALVKQVGFDSIRFSIS----WSR---ILPHG----------NISGGVNQQGVDFYNNLINELISNGLTPFVTLFH 83 (402)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~----W~r---i~P~~----------~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H 83 (402)
.++-|+.|+..++|.+.+-++ |+- ..|+- ...|.+..+ =++++++-++++||++|.-+
T Consensus 18 lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~---di~elv~yA~~rgI~viPEi-- 92 (303)
T cd02742 18 IKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYA---QLKDIIEYAAARGIEVIPEI-- 92 (303)
T ss_pred HHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHH---HHHHHHHHHHHcCCEEEEec--
Confidence 556689999999999888776 522 12321 012456654 46999999999999999888
Q ss_pred CCCchhhH
Q 015710 84 WDTPQALE 91 (402)
Q Consensus 84 ~~~P~~l~ 91 (402)
|+|....
T Consensus 93 -D~PGH~~ 99 (303)
T cd02742 93 -DMPGHST 99 (303)
T ss_pred -cchHHHH
Confidence 8897653
No 110
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=41.40 E-value=1.1e+02 Score=30.51 Aligned_cols=110 Identities=14% Similarity=0.046 Sum_probs=66.1
Q ss_pred hHHHHHHHHHcCCCceee--ccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCCCC-----chhhHhh
Q 015710 21 YKEDIALVKQVGFDSIRF--SISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDT-----PQALEDE 93 (402)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~--si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~-----P~~l~~~ 93 (402)
..+-++.+++.|+..==+ .+.|..-. + .-.+|.+..---.++|++|+++|++.++.++-+-. |..-...
T Consensus 26 v~~~~~~~~~~~iP~d~i~lD~~~~~~~--~--~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~~~~~~~y~e~~ 101 (339)
T cd06603 26 VKEVDAGFDEHDIPYDVIWLDIEHTDGK--R--YFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPHIKRDDGYYVYKEAK 101 (339)
T ss_pred HHHHHHHHHHcCCCceEEEEChHHhCCC--C--ceEeCcccCCCHHHHHHHHHHCCCEEEEEecCceecCCCCHHHHHHH
Confidence 455577788877764333 44443210 0 01233332222478999999999999988865432 2211000
Q ss_pred -------------c--------C---CCCChhhHHHHHHHHHHHHHHhCC-cceEEEeecCCCccc
Q 015710 94 -------------Y--------G---GFLSPKIVKDFGDYADLCFKEFGD-RVKHWITLNEPETVG 134 (402)
Q Consensus 94 -------------~--------g---g~~~~~~~~~f~~ya~~~~~~~g~-~v~~w~t~NEp~~~~ 134 (402)
+ + -|.|++..+.|.+..+.+....+. -+-.|+=+|||.++.
T Consensus 102 ~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~~~g~~g~w~D~~Ep~~f~ 167 (339)
T cd06603 102 DKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYDKYKGSTENLYIWNDMNEPSVFN 167 (339)
T ss_pred HCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHHhhcccCCCceEEeccCCccccC
Confidence 0 1 267899999998888876654332 346788899998654
No 111
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=41.34 E-value=89 Score=29.40 Aligned_cols=55 Identities=13% Similarity=0.175 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHCCCeEEEEccCCCCchhhHhhcCCCCChhhHHHHHHHHHHHHHHhC
Q 015710 60 VDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSPKIVKDFGDYADLCFKEFG 118 (402)
Q Consensus 60 ~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~g 118 (402)
.+...+.|..|+++|+++++++.-+.....+ ....+++..+.|++-+..++++||
T Consensus 50 ~~~~~~~i~~l~~kG~KVl~sigg~~~~~~~----~~~~~~~~~~~fa~~l~~~v~~yg 104 (255)
T cd06542 50 LTNKETYIRPLQAKGTKVLLSILGNHLGAGF----ANNLSDAAAKAYAKAIVDTVDKYG 104 (255)
T ss_pred hHHHHHHHHHHhhCCCEEEEEECCCCCCCCc----cccCCHHHHHHHHHHHHHHHHHhC
Confidence 4567889999999999999999654443211 012445556666666666677776
No 112
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=41.25 E-value=1.6e+02 Score=29.32 Aligned_cols=107 Identities=18% Similarity=0.151 Sum_probs=63.9
Q ss_pred hHHHHHHHHHcCCCc--eeeccccCcccccCCCCCCCChhHHHHH--HHHHHHHHHCCCeEEEEccCCCCch--------
Q 015710 21 YKEDIALVKQVGFDS--IRFSISWSRILPHGNISGGVNQQGVDFY--NNLINELISNGLTPFVTLFHWDTPQ-------- 88 (402)
Q Consensus 21 ~~eDi~l~~~lG~~~--~R~si~W~ri~P~~~~~g~~n~~~~~~y--~~~i~~l~~~gi~p~vtL~H~~~P~-------- 88 (402)
..+-++.+++.|+.. +=+.+.|..-. +. -.+|.+..--- .++|++|+++|++.++.+.-+-.+.
T Consensus 26 v~~~~~~~r~~~iP~d~i~lD~~~~~~~--~~--f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~~~~~~~~~~~ 101 (339)
T cd06602 26 VKEVVENMRAAGIPLDVQWNDIDYMDRR--RD--FTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAISANEPTGSYPP 101 (339)
T ss_pred HHHHHHHHHHhCCCcceEEECcccccCc--cc--eecccccCCCccHHHHHHHHHHCCCEEEEEEeCccccCcCCCCCHH
Confidence 445577888888764 44455664321 11 22333222223 8999999999999998876543321
Q ss_pred hhH--hh-----------c--------CC---CCChhhHHHHHHHHHHHHHHhCCcceEEEeecCCCc
Q 015710 89 ALE--DE-----------Y--------GG---FLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPET 132 (402)
Q Consensus 89 ~l~--~~-----------~--------gg---~~~~~~~~~f~~ya~~~~~~~g~~v~~w~t~NEp~~ 132 (402)
.-. ++ + ++ |+|++..+.|....+.++..+|- --+|+=+|||..
T Consensus 102 ~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gv-dg~w~D~~Ep~~ 168 (339)
T cd06602 102 YDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIKDFHDQVPF-DGLWIDMNEPSN 168 (339)
T ss_pred HHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHHHHHhcCCC-cEEEecCCCCch
Confidence 100 00 0 12 67888888887777766655542 245677999864
No 113
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=41.02 E-value=85 Score=29.38 Aligned_cols=56 Identities=16% Similarity=0.220 Sum_probs=34.1
Q ss_pred HHHHHHHHHHCCCeEEEEccCCCCchhhHhhcCCCCChhhHHHHHHHHHHHHHHhCCcc
Q 015710 63 YNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSPKIVKDFGDYADLCFKEFGDRV 121 (402)
Q Consensus 63 y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~g~~v 121 (402)
.++.++.+++.|+.-+=.-.+|.... ...-++-.+....+.+.+..+.| +.+|=+|
T Consensus 23 ~~~~~~~~~~~G~n~VRi~v~~~~~~--~~~~~~~~~~~~~~~ld~~v~~a-~~~gi~v 78 (281)
T PF00150_consen 23 TEADFDQLKALGFNTVRIPVGWEAYQ--EPNPGYNYDETYLARLDRIVDAA-QAYGIYV 78 (281)
T ss_dssp HHHHHHHHHHTTESEEEEEEESTSTS--TTSTTTSBTHHHHHHHHHHHHHH-HHTT-EE
T ss_pred HHHHHHHHHHCCCCEEEeCCCHHHhc--CCCCCccccHHHHHHHHHHHHHH-HhCCCeE
Confidence 58899999999999887666652221 11112224566667777777765 4445444
No 114
>PRK14705 glycogen branching enzyme; Provisional
Probab=40.90 E-value=1.9e+02 Score=34.21 Aligned_cols=93 Identities=17% Similarity=0.269 Sum_probs=55.0
Q ss_pred HHHHHHcCCCceeec-c-------ccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEcc--CCCCchhhHhhc
Q 015710 25 IALVKQVGFDSIRFS-I-------SWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF--HWDTPQALEDEY 94 (402)
Q Consensus 25 i~l~~~lG~~~~R~s-i-------~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~--H~~~P~~l~~~~ 94 (402)
++-+|+||++++=+. | +|- -.|.....-.......+=++.+|++|.++||.+|+.+. |+..=.|....+
T Consensus 772 ldYlk~LGvt~IeLmPv~e~p~~~swG-Y~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~VILD~V~nH~~~d~~~l~~f 850 (1224)
T PRK14705 772 VDYVKWLGFTHVEFMPVAEHPFGGSWG-YQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGVLLDWVPAHFPKDSWALAQF 850 (1224)
T ss_pred HHHHHHhCCCEEEECccccCCCCCCCC-CCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEEEeccccCCcchhhhhhc
Confidence 689999999998766 3 241 11111000000111244579999999999999999854 542111110000
Q ss_pred ----------------CC-------CCChhhHHHHHHHHHHHHHHhC
Q 015710 95 ----------------GG-------FLSPKIVKDFGDYADLCFKEFG 118 (402)
Q Consensus 95 ----------------gg-------~~~~~~~~~f~~ya~~~~~~~g 118 (402)
.. +.++++.+.+.+=+..-+++|+
T Consensus 851 dg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~eyh 897 (1224)
T PRK14705 851 DGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEFH 897 (1224)
T ss_pred CCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 01 3456777888888888888886
No 115
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=40.88 E-value=66 Score=35.44 Aligned_cols=57 Identities=14% Similarity=0.332 Sum_probs=37.8
Q ss_pred HHHHHHcCCCceeec----cccCcccccCCC--------------CCCC--Ch---hHHHHHHHHHHHHHHCCCeEEEEc
Q 015710 25 IALVKQVGFDSIRFS----ISWSRILPHGNI--------------SGGV--NQ---QGVDFYNNLINELISNGLTPFVTL 81 (402)
Q Consensus 25 i~l~~~lG~~~~R~s----i~W~ri~P~~~~--------------~g~~--n~---~~~~~y~~~i~~l~~~gi~p~vtL 81 (402)
|+-+|+|||+++.+= +.+-+..++... .+.+ +. ..+.=++.||++|.++||++|+.+
T Consensus 206 i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDV 285 (697)
T COG1523 206 IDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDV 285 (697)
T ss_pred HHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEE
Confidence 899999999999864 233222221100 0111 12 246678999999999999999974
No 116
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=40.45 E-value=1.3e+02 Score=30.63 Aligned_cols=104 Identities=13% Similarity=0.174 Sum_probs=60.5
Q ss_pred hHHHHHHHHHcCCCceeeccc-c-CcccccCCCCCC-CChhHHHHHHHHHHHHHHCCCe-EEEEccCCCCchhhHhhcCC
Q 015710 21 YKEDIALVKQVGFDSIRFSIS-W-SRILPHGNISGG-VNQQGVDFYNNLINELISNGLT-PFVTLFHWDTPQALEDEYGG 96 (402)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~-W-~ri~P~~~~~g~-~n~~~~~~y~~~i~~l~~~gi~-p~vtL~H~~~P~~l~~~~gg 96 (402)
-++.+++|+++|+|.+-+++. - .++...- |. .+. +-..+.++.+++.|++ +.++|- +++|.
T Consensus 114 t~e~l~~l~~~GvnrislGvQS~~d~~L~~l---~R~~~~---~~~~~ai~~l~~~G~~~v~~dlI-~GlPg-------- 178 (400)
T PRK07379 114 DLEQLQGYRSLGVNRVSLGVQAFQDELLALC---GRSHRV---KDIFAAVDLIHQAGIENFSLDLI-SGLPH-------- 178 (400)
T ss_pred CHHHHHHHHHCCCCEEEEEcccCCHHHHHHh---CCCCCH---HHHHHHHHHHHHcCCCeEEEEee-cCCCC--------
Confidence 367799999999996666652 2 1121111 11 222 3457889999999998 556653 46663
Q ss_pred CCChhhHHHHHHHHHHHHHHhCCcceEEEeecCCCcccccccccCcc
Q 015710 97 FLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVGECGYAKGTK 143 (402)
Q Consensus 97 ~~~~~~~~~f~~ya~~~~~~~g~~v~~w~t~NEp~~~~~~gy~~g~~ 143 (402)
.+ .+.+.+=++.+.+-=-+.|..+...-||.+....-+..|.+
T Consensus 179 -qt---~e~~~~tl~~~~~l~p~~is~y~L~~~pgT~l~~~~~~g~~ 221 (400)
T PRK07379 179 -QT---LEDWQASLEAAIALNPTHLSCYDLVLEPGTAFGKQYQPGKA 221 (400)
T ss_pred -CC---HHHHHHHHHHHHcCCCCEEEEecceecCCchhHHHhhcCCC
Confidence 22 33344434443332235788887788888655444444443
No 117
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=40.22 E-value=85 Score=33.42 Aligned_cols=64 Identities=16% Similarity=0.336 Sum_probs=39.8
Q ss_pred hhchHHHHHHHHHcCCCceeeccccCccc-ccCC-CC--CCCCh--hHHHHHHHHHHHHHHCCCeEEEEc
Q 015710 18 YFRYKEDIALVKQVGFDSIRFSISWSRIL-PHGN-IS--GGVNQ--QGVDFYNNLINELISNGLTPFVTL 81 (402)
Q Consensus 18 y~~~~eDi~l~~~lG~~~~R~si~W~ri~-P~~~-~~--g~~n~--~~~~~y~~~i~~l~~~gi~p~vtL 81 (402)
..-..+-++-+++||++++=++--...-. ..+- +. -.+|. ...+=++++|+++.++||++|+.+
T Consensus 27 l~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~ 96 (539)
T TIGR02456 27 FPGLTSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDL 96 (539)
T ss_pred HHHHHHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 44456668999999999987763221100 0000 00 01121 124568999999999999999975
No 118
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=40.20 E-value=55 Score=36.99 Aligned_cols=56 Identities=20% Similarity=0.291 Sum_probs=41.6
Q ss_pred hhchHHHHHHHHHcCCCceeeccc---------------cCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEc
Q 015710 18 YFRYKEDIALVKQVGFDSIRFSIS---------------WSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (402)
Q Consensus 18 y~~~~eDi~l~~~lG~~~~R~si~---------------W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 81 (402)
+....+-+.-+++||++++=+|-- +.+|.|.- | +.+=++++|++++++||.+|+.+
T Consensus 19 f~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~l---G-----t~e~f~~Lv~aah~~Gi~VIlDi 89 (879)
T PRK14511 19 FDDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPEL---G-----GEEGLRRLAAALRAHGMGLILDI 89 (879)
T ss_pred HHHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCC---C-----CHHHHHHHHHHHHHCCCEEEEEe
Confidence 455677889999999999877632 22333332 2 34568999999999999999986
No 119
>PRK10785 maltodextrin glucosidase; Provisional
Probab=39.68 E-value=48 Score=35.84 Aligned_cols=59 Identities=14% Similarity=0.204 Sum_probs=37.5
Q ss_pred HHHHHHHHHcCCCceeeccccCcccccCC-C--C--CCCC--hhHHHHHHHHHHHHHHCCCeEEEEcc
Q 015710 22 KEDIALVKQVGFDSIRFSISWSRILPHGN-I--S--GGVN--QQGVDFYNNLINELISNGLTPFVTLF 82 (402)
Q Consensus 22 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~-~--~--g~~n--~~~~~~y~~~i~~l~~~gi~p~vtL~ 82 (402)
.+-++-+++|||+++=++--... |... . . -.+| ....+=++++|+++.++||++|+.+.
T Consensus 182 ~~kLdYL~~LGv~~I~L~Pif~s--~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~V 247 (598)
T PRK10785 182 SEKLPYLKKLGVTALYLNPIFTA--PSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDGV 247 (598)
T ss_pred HHHHHHHHHcCCCEEEeCCcccC--CCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 44479999999999888731111 1110 0 0 0111 11235589999999999999999753
No 120
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=39.61 E-value=1.6e+02 Score=28.65 Aligned_cols=102 Identities=11% Similarity=0.100 Sum_probs=63.7
Q ss_pred cchhhhchHHHHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCCC------Cc
Q 015710 14 ADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWD------TP 87 (402)
Q Consensus 14 a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~------~P 87 (402)
+.-.+..+++=|+.++++|+..+=+.--|+.-.+... .+......-....++++-.+++|+.+++-.+|-+ +=
T Consensus 27 ~g~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~-~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~~~~~~~~~~~ 105 (273)
T PF10566_consen 27 HGATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDD-FDFTKPIPDFDLPELVDYAKEKGVGIWLWYHSETGGNVANLE 105 (273)
T ss_dssp BSSSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT---TT-B-TT--HHHHHHHHHHTT-EEEEEEECCHTTBHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEecccccccccccc-ccccccCCccCHHHHHHHHHHcCCCEEEEEeCCcchhhHhHH
Confidence 3446778888899999999999999999987332210 0000011113468999999999999999998866 21
Q ss_pred hhhHh------hcC------CC---CChhhHHHHHHHHHHHHHH
Q 015710 88 QALED------EYG------GF---LSPKIVKDFGDYADLCFKE 116 (402)
Q Consensus 88 ~~l~~------~~g------g~---~~~~~~~~f~~ya~~~~~~ 116 (402)
.-+.+ +.| +| .+.+.++.+.+-++.++++
T Consensus 106 ~~~~~~f~~~~~~Gv~GvKidF~~~d~Q~~v~~y~~i~~~AA~~ 149 (273)
T PF10566_consen 106 KQLDEAFKLYAKWGVKGVKIDFMDRDDQEMVNWYEDILEDAAEY 149 (273)
T ss_dssp CCHHHHHHHHHHCTEEEEEEE--SSTSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCEEeeCcCCCCCHHHHHHHHHHHHHHHHc
Confidence 11211 112 23 4456788888888888765
No 121
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=39.58 E-value=2.5e+02 Score=27.96 Aligned_cols=46 Identities=15% Similarity=0.188 Sum_probs=37.1
Q ss_pred HHHHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEcc
Q 015710 22 KEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF 82 (402)
Q Consensus 22 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~ 82 (402)
.+|++.+.+.|++.+|+....+.. +-..+.|+.+++.|++..+.+-
T Consensus 90 ~~dl~~a~~~gvd~iri~~~~~e~---------------d~~~~~i~~ak~~G~~v~~~l~ 135 (333)
T TIGR03217 90 VHDLKAAYDAGARTVRVATHCTEA---------------DVSEQHIGMARELGMDTVGFLM 135 (333)
T ss_pred HHHHHHHHHCCCCEEEEEeccchH---------------HHHHHHHHHHHHcCCeEEEEEE
Confidence 689999999999999998754432 1247889999999999988773
No 122
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=38.84 E-value=2.3e+02 Score=28.46 Aligned_cols=84 Identities=19% Similarity=0.284 Sum_probs=59.7
Q ss_pred cchhhhchHHHHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHhh
Q 015710 14 ADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDE 93 (402)
Q Consensus 14 a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~ 93 (402)
|-=||+ |+ =.....+.|+..+|+. | |.+-.+ +....+++.++++||-.=+...|-.+..-+.++
T Consensus 79 aDiHf~-~r-la~~~~~~g~~k~RIN---------P---GNig~~--~~v~~vVe~Ak~~g~piRIGVN~GSLek~~~~k 142 (361)
T COG0821 79 ADIHFD-YR-LALEAAECGVDKVRIN---------P---GNIGFK--DRVREVVEAAKDKGIPIRIGVNAGSLEKRLLEK 142 (361)
T ss_pred EEeecc-HH-HHHHhhhcCcceEEEC---------C---cccCcH--HHHHHHHHHHHHcCCCEEEecccCchhHHHHHH
Confidence 333565 33 2344457788888873 3 555333 368999999999999999999999999999999
Q ss_pred cCCCCChhhHHHHHHHHHHH
Q 015710 94 YGGFLSPKIVKDFGDYADLC 113 (402)
Q Consensus 94 ~gg~~~~~~~~~f~~ya~~~ 113 (402)
||+-+.+..++--.++|+.+
T Consensus 143 y~~pt~ealveSAl~~a~~~ 162 (361)
T COG0821 143 YGGPTPEALVESALEHAELL 162 (361)
T ss_pred hcCCCHHHHHHHHHHHHHHH
Confidence 88655455566555565553
No 123
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=38.59 E-value=1.2e+02 Score=29.39 Aligned_cols=92 Identities=12% Similarity=0.188 Sum_probs=59.3
Q ss_pred hhhchHHH-HHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCCCC----chhhH
Q 015710 17 FYFRYKED-IALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDT----PQALE 91 (402)
Q Consensus 17 ~y~~~~eD-i~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~----P~~l~ 91 (402)
||--|.++ .+.+++.+-+.=-++..|-.|-|++.+.+.. ..++++.++++|+++++++..++- +.-+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~lt~v~p~w~~~~~~g~~~~~~-------~~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~ 79 (313)
T cd02874 7 YYTPRNGSDYESLRANAPYLTYIAPFWYGVDADGTLTGLP-------DERLIEAAKRRGVKPLLVITNLTNGNFDSELAH 79 (313)
T ss_pred EEecCCCchHHHHHHhcCCCCEEEEEEEEEcCCCCCCCCC-------CHHHHHHHHHCCCeEEEEEecCCCCCCCHHHHH
Confidence 33333443 6777777777777888999998876422222 368899999999999999976541 11111
Q ss_pred hhcCCCCChhhHHHHHHHHHHHHHHhC
Q 015710 92 DEYGGFLSPKIVKDFGDYADLCFKEFG 118 (402)
Q Consensus 92 ~~~gg~~~~~~~~~f~~ya~~~~~~~g 118 (402)
. -..+++..+.|++=+-.+++++|
T Consensus 80 ~---~l~~~~~r~~fi~~iv~~l~~~~ 103 (313)
T cd02874 80 A---VLSNPEARQRLINNILALAKKYG 103 (313)
T ss_pred H---HhcCHHHHHHHHHHHHHHHHHhC
Confidence 1 12356666777666666667665
No 124
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=38.27 E-value=95 Score=29.87 Aligned_cols=81 Identities=10% Similarity=-0.011 Sum_probs=54.1
Q ss_pred HHHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHhhcCCCCChhh
Q 015710 23 EDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSPKI 102 (402)
Q Consensus 23 eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~ 102 (402)
.+++++++.|++.+|+.++=|...-... -+.-..+.++...+.++.+++.|+++.++.-+| .+ +... .
T Consensus 82 ~~~~~a~~~g~~~i~i~~~~sd~~~~~~-~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~------~d--~~~~---~ 149 (273)
T cd07941 82 PNLQALLEAGTPVVTIFGKSWDLHVTEA-LGTTLEENLAMIRDSVAYLKSHGREVIFDAEHF------FD--GYKA---N 149 (273)
T ss_pred HHHHHHHhCCCCEEEEEEcCCHHHHHHH-cCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEec------cc--cCCC---C
Confidence 5788999999999999876554432211 022235678889999999999999998876554 11 1112 3
Q ss_pred HHHHHHHHHHHHH
Q 015710 103 VKDFGDYADLCFK 115 (402)
Q Consensus 103 ~~~f~~ya~~~~~ 115 (402)
.+.+.++++.+.+
T Consensus 150 ~~~~~~~~~~~~~ 162 (273)
T cd07941 150 PEYALATLKAAAE 162 (273)
T ss_pred HHHHHHHHHHHHh
Confidence 5566677777654
No 125
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=37.83 E-value=2.1e+02 Score=30.34 Aligned_cols=99 Identities=20% Similarity=0.230 Sum_probs=52.4
Q ss_pred HHHHHHHHcCCCCEEEeecCCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeecc-c---cccc
Q 015710 274 LLLYLKKKYNPPPIYITENGVGDVNSSSWPISYALNDTVRVNYYNDHLSYILEAINSGGVDVRGYFAWSFL-D---NYEW 349 (402)
Q Consensus 274 ~L~~~~~rY~~ppI~ITENG~~~~~~~~~~~~~~i~D~~Ri~yl~~hl~~v~~Ai~~dGv~v~GY~~WSl~-D---n~eW 349 (402)
.|..++++|+.-.|+-||...+.... +....+-.-.|. ..+...+...+.. | +.|+..|.|+ | ..-|
T Consensus 319 ~l~~~h~~~P~k~l~~TE~~~g~~~~---~~~~~~g~w~~~---~~y~~~ii~~lnn-~--~~gw~~WNl~LD~~GGP~~ 389 (496)
T PF02055_consen 319 ALDQVHNKFPDKFLLFTEACCGSWNW---DTSVDLGSWDRA---ERYAHDIIGDLNN-W--VSGWIDWNLALDENGGPNW 389 (496)
T ss_dssp HHHHHHHHSTTSEEEEEEEESS-STT---S-SS-TTHHHHH---HHHHHHHHHHHHT-T--EEEEEEEESEBETTS---T
T ss_pred HHHHHHHHCCCcEEEeeccccCCCCc---ccccccccHHHH---HHHHHHHHHHHHh-h--ceeeeeeeeecCCCCCCcc
Confidence 57889999987679999987654321 000011112233 2344445566666 6 7899999985 2 2335
Q ss_pred cCCCcCceeeEEEcCCCCccccccchHHHHHHHHH
Q 015710 350 EYGYTSRFGIIYVDYKDGLRRSLKNSALWFKKFLR 384 (402)
Q Consensus 350 ~~g~~~rfGL~~VD~~~~~~R~pK~S~~~y~~ii~ 384 (402)
..++... .+-||.++ .+-+..+.++.++++-+
T Consensus 390 ~~n~~d~--~iivd~~~-~~~~~~p~yY~~gHfSK 421 (496)
T PF02055_consen 390 VGNFCDA--PIIVDSDT-GEFYKQPEYYAMGHFSK 421 (496)
T ss_dssp T---B----SEEEEGGG-TEEEE-HHHHHHHHHHT
T ss_pred cCCCCCc--eeEEEcCC-CeEEEcHHHHHHHHHhc
Confidence 4444333 34477653 44444566776666543
No 126
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=37.40 E-value=64 Score=36.26 Aligned_cols=64 Identities=16% Similarity=0.215 Sum_probs=41.7
Q ss_pred hhchHHHHHHHHHcCCCceeeccccCccccc--CC-C--CCCCC--hhHHHHHHHHHHHHHHCCCeEEEEc
Q 015710 18 YFRYKEDIALVKQVGFDSIRFSISWSRILPH--GN-I--SGGVN--QQGVDFYNNLINELISNGLTPFVTL 81 (402)
Q Consensus 18 y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~--~~-~--~g~~n--~~~~~~y~~~i~~l~~~gi~p~vtL 81 (402)
+....+-+.-+++||++++=+|--+.-.-.. |- . -..+| ..+.+-+++++++|+++||.+|+.+
T Consensus 15 f~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDi 85 (825)
T TIGR02401 15 FDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDI 85 (825)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 4556788999999999999777433211000 00 0 00111 1234568999999999999999975
No 127
>PRK09936 hypothetical protein; Provisional
Probab=36.91 E-value=3.9e+02 Score=26.24 Aligned_cols=62 Identities=21% Similarity=0.423 Sum_probs=44.2
Q ss_pred hHHHHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHh
Q 015710 21 YKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALED 92 (402)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~ 92 (402)
|++=++.++.+|++++ -+.|++.--+.+ |.- + .+..+.++...+.||+.+|.|+ +| |.|.+.
T Consensus 40 Wq~~~~~~~~~G~~tL--ivQWt~yG~~~f--g~~--~--g~La~~l~~A~~~Gl~v~vGL~-~D-p~y~q~ 101 (296)
T PRK09936 40 WQGLWSQLRLQGFDTL--VVQWTRYGDADF--GGQ--R--GWLAKRLAAAQQAGLKLVVGLY-AD-PEFFMH 101 (296)
T ss_pred HHHHHHHHHHcCCcEE--EEEeeeccCCCc--ccc--h--HHHHHHHHHHHHcCCEEEEccc-CC-hHHHHH
Confidence 4555899999999984 568988821111 212 2 4689999999999999999996 44 555543
No 128
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=36.55 E-value=1.5e+02 Score=30.41 Aligned_cols=109 Identities=17% Similarity=0.270 Sum_probs=64.3
Q ss_pred chHHHHHHHHHcCCCc--eeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCC---CCc---hh--
Q 015710 20 RYKEDIALVKQVGFDS--IRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHW---DTP---QA-- 89 (402)
Q Consensus 20 ~~~eDi~l~~~lG~~~--~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~---~~P---~~-- 89 (402)
...+-++.+++.|+.. +=+...|..-... -.+|.+...-..++|+.|+++|++.++.++-+ +.+ ..
T Consensus 44 ~v~~~i~~~~~~~iP~d~~~iD~~~~~~~~~----f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~~~~~~~~~ 119 (441)
T PF01055_consen 44 EVREVIDRYRSNGIPLDVIWIDDDYQDGYGD----FTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDSPDYENYDE 119 (441)
T ss_dssp HHHHHHHHHHHTT--EEEEEE-GGGSBTTBT----T-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTTTB-HHHHH
T ss_pred HHHHHHHHHHHcCCCccceeccccccccccc----cccccccccchHHHHHhHhhCCcEEEEEeecccCCCCCcchhhhh
Confidence 4456678888888764 4444456553221 34555544456999999999999998876532 222 11
Q ss_pred ------hHhhcCC----------------CCChhhHHHHHHHHHHHHHHhCCcceEEEeecCCCcc
Q 015710 90 ------LEDEYGG----------------FLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETV 133 (402)
Q Consensus 90 ------l~~~~gg----------------~~~~~~~~~f~~ya~~~~~~~g~~v~~w~t~NEp~~~ 133 (402)
+.....| |.|++..+.|.+..+.+++.+|- --+|+=+|||..+
T Consensus 120 ~~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gv-dg~w~D~~E~~~~ 184 (441)
T PF01055_consen 120 AKEKGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDYGV-DGWWLDFGEPSSF 184 (441)
T ss_dssp HHHTT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTST--SEEEEESTTTBSS
T ss_pred HhhcCceeecccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhccCC-ceEEeecCCcccc
Confidence 0000012 77888888887777776666542 2456669999864
No 129
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=36.54 E-value=2.5e+02 Score=27.82 Aligned_cols=108 Identities=18% Similarity=0.165 Sum_probs=62.2
Q ss_pred chHHHHHHHHHcCCCc--eeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCC---C--CchhhHh
Q 015710 20 RYKEDIALVKQVGFDS--IRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHW---D--TPQALED 92 (402)
Q Consensus 20 ~~~eDi~l~~~lG~~~--~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~---~--~P~~l~~ 92 (402)
...+-++.+++.|+.. +=+.+.|..-. +. -.+|.+..---.++|+.|+++|++.++.+.-+ + .|..-+.
T Consensus 25 ~v~~~~~~~~~~~iP~d~i~lD~~~~~~~--~~--f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P~v~~~~~~~~~~e~ 100 (339)
T cd06604 25 EVREIADEFRERDIPCDAIYLDIDYMDGY--RV--FTWDKERFPDPKELIKELHEQGFKVVTIIDPGVKVDPGYDVYEEG 100 (339)
T ss_pred HHHHHHHHHHHhCCCcceEEECchhhCCC--Cc--eeeccccCCCHHHHHHHHHHCCCEEEEEEeCceeCCCCChHHHHH
Confidence 3456678888888764 44445564321 10 12333222224799999999999998755322 1 2222110
Q ss_pred h---------------------cC---CCCChhhHHHHHHHHHHHHHHhCCcce-EEEeecCCCccc
Q 015710 93 E---------------------YG---GFLSPKIVKDFGDYADLCFKEFGDRVK-HWITLNEPETVG 134 (402)
Q Consensus 93 ~---------------------~g---g~~~~~~~~~f~~ya~~~~~~~g~~v~-~w~t~NEp~~~~ 134 (402)
. .+ -|+|++..+.|.+.-+.++ ...|+ +|+=+|||..+.
T Consensus 101 ~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~---~~Gvdg~w~D~~Ep~~~~ 164 (339)
T cd06604 101 LENDYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYKKFV---DLGVDGIWNDMNEPAVFN 164 (339)
T ss_pred HHCCeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHHHHHh---hCCCceEeecCCCccccC
Confidence 0 01 2678888888877666544 23454 555699998653
No 130
>PF03511 Fanconi_A: Fanconi anaemia group A protein; InterPro: IPR003516 Fanconi anaemia (FA) [, , ] is a recessive inherited disease characterised by defective DNA repair. FA cells are sensitive to DNA cross-linking agents that cause chromosomal instability and cell death. The disease is manifested clinically by progressive pancytopenia, variable physical anomalies, and predisposition to malignancy []. Four complementation groups have been identified, designated A to D. The FA group A gene (FAA) has been cloned [], but its function remains to be elucidated.
Probab=36.44 E-value=26 Score=25.99 Aligned_cols=39 Identities=18% Similarity=0.396 Sum_probs=31.6
Q ss_pred CcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCCC
Q 015710 43 SRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWD 85 (402)
Q Consensus 43 ~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~ 85 (402)
+++.|.. +.=-.++++...+++..|.++|| +.+.|++-+
T Consensus 19 s~l~p~~---~~d~~kaldiCaeIL~cLE~R~i-sWl~LFqlt 57 (64)
T PF03511_consen 19 SYLAPKE---GADSLKALDICAEILGCLEKRKI-SWLVLFQLT 57 (64)
T ss_pred HhcCccc---ccccHHHHHHHHHHHHHHHhCCC-cHHHhhhcc
Confidence 5677876 44556889999999999999999 888887644
No 131
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=36.09 E-value=1.4e+02 Score=29.63 Aligned_cols=60 Identities=13% Similarity=0.325 Sum_probs=49.7
Q ss_pred HHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCCCCch
Q 015710 24 DIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQ 88 (402)
Q Consensus 24 Di~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~ 88 (402)
+.+.+|++|.+++.|=+-|. |+. +...|..-.++.+++..+|+++||--++-+..+|.+.
T Consensus 111 s~~rike~GadavK~Llyy~---pD~--~~ein~~k~a~vervg~ec~a~dipf~lE~ltYd~~~ 170 (325)
T TIGR01232 111 SAKRLKEQGANAVKFLLYYD---VDD--AEEINIQKKAYIERIGSECVAEDIPFFLEVLTYDDNI 170 (325)
T ss_pred cHHHHHHhCCCeEEEEEEeC---CCC--ChHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCCC
Confidence 37899999999999998884 343 2567888889999999999999999999887665543
No 132
>COG2951 MltB Membrane-bound lytic murein transglycosylase B [Cell envelope biogenesis, outer membrane]
Probab=35.51 E-value=45 Score=33.49 Aligned_cols=94 Identities=26% Similarity=0.399 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHcCCCC-----EEEeecCCCCCCCCCCCC----CCccCCHHHHHHHHHHHHHHHHHHHcCCCC---eEE
Q 015710 270 GIRELLLYLKKKYNPPP-----IYITENGVGDVNSSSWPI----SYALNDTVRVNYYNDHLSYILEAINSGGVD---VRG 337 (402)
Q Consensus 270 gl~~~L~~~~~rY~~pp-----I~ITENG~~~~~~~~~~~----~~~i~D~~Ri~yl~~hl~~v~~Ai~~dGv~---v~G 337 (402)
-...+|.++.++|+.|+ |+=+|.|++......-.. .-..+|..|..|.+..|.+.++-+++.+++ .+|
T Consensus 111 ~~~~~l~~~e~~yGVp~~ii~aiWg~Et~fG~~~g~~~v~~ALaTLa~~~~rR~~~f~~eL~aaL~ii~~gdv~~~~~~G 190 (343)
T COG2951 111 QYAAALARAERRYGVPAPILVAIWGMETGFGRVMGKFRVLDALATLAFADPRRAGFFRDELIAALKIIQDGDVDPLALKG 190 (343)
T ss_pred HHHHHHHHHHHHhCCCchheeeeehhhcccccccCccchHHHHhhhcccccchhhhhHHHHHHHHHHHhhcCCCcccccc
Confidence 34568899999999863 444688887654321110 113348899999999999999988872377 555
Q ss_pred EEEeeccccccccCCCc------CceeeEEEcCCCCcccccc
Q 015710 338 YFAWSFLDNYEWEYGYT------SRFGIIYVDYKDGLRRSLK 373 (402)
Q Consensus 338 Y~~WSl~Dn~eW~~g~~------~rfGL~~VD~~~~~~R~pK 373 (402)
+|+-.+- ..|=.|.||++.+.+|-+.
T Consensus 191 ----------SwAGAmGq~QFmPss~~~YaVD~DGDG~~Diw 222 (343)
T COG2951 191 ----------SWAGAMGQTQFMPSSYLKYAVDGDGDGHRDIW 222 (343)
T ss_pred ----------hhhhccCCcccCcHHHHHhhhcCCCCCccCCc
Confidence 5554333 3566778899987788777
No 133
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=35.34 E-value=1.1e+02 Score=26.18 Aligned_cols=56 Identities=18% Similarity=0.197 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHCCCeEEEEccCCCCchhhHhhcCCCCChhhHHHHHHHHHHHHHHhCCc
Q 015710 61 DFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSPKIVKDFGDYADLCFKEFGDR 120 (402)
Q Consensus 61 ~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~g~~ 120 (402)
+=+.-+++.|++.|++|++.+.= -.+.|. + |-| .+.+..+.|.+=.+.++++.|=+
T Consensus 36 ~Dl~l~L~~~k~~g~~~lfVi~P-vNg~wy-d-ytG-~~~~~r~~~y~kI~~~~~~~gf~ 91 (130)
T PF04914_consen 36 DDLQLLLDVCKELGIDVLFVIQP-VNGKWY-D-YTG-LSKEMRQEYYKKIKYQLKSQGFN 91 (130)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-----HHHH-H-HTT---HHHHHHHHHHHHHHHHTTT--
T ss_pred HHHHHHHHHHHHcCCceEEEecC-CcHHHH-H-HhC-CCHHHHHHHHHHHHHHHHHCCCE
Confidence 44688999999999999999831 112354 2 456 46777777777788888888854
No 134
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=35.34 E-value=1.5e+02 Score=32.06 Aligned_cols=92 Identities=17% Similarity=0.129 Sum_probs=57.9
Q ss_pred HHHHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCCCCch----hhHhh----
Q 015710 22 KEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQ----ALEDE---- 93 (402)
Q Consensus 22 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~----~l~~~---- 93 (402)
++|++++++.|++.+|+..+.+.+ +-....|+.++++|+.+.+++..-+.|. .+.+-
T Consensus 94 ~~~v~~a~~~Gvd~irif~~lnd~---------------~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~ 158 (582)
T TIGR01108 94 ERFVKKAVENGMDVFRIFDALNDP---------------RNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEEL 158 (582)
T ss_pred HHHHHHHHHCCCCEEEEEEecCcH---------------HHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHH
Confidence 456899999999999999776554 1246677888888888888776655551 11110
Q ss_pred ------------cCCCCChhhHHHHHHHHHHHHHHhCCcceEEEeecCCCc
Q 015710 94 ------------YGGFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPET 132 (402)
Q Consensus 94 ------------~gg~~~~~~~~~f~~ya~~~~~~~g~~v~~w~t~NEp~~ 132 (402)
-.|...|.. ..+..+.+.++++ ..-...+-|-..+
T Consensus 159 ~~~Gad~I~i~Dt~G~~~P~~---v~~lv~~lk~~~~-~pi~~H~Hnt~Gl 205 (582)
T TIGR01108 159 LEMGVDSICIKDMAGILTPKA---AYELVSALKKRFG-LPVHLHSHATTGM 205 (582)
T ss_pred HHcCCCEEEECCCCCCcCHHH---HHHHHHHHHHhCC-CceEEEecCCCCc
Confidence 145555543 3455555556665 2234666666554
No 135
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=34.99 E-value=82 Score=31.51 Aligned_cols=69 Identities=20% Similarity=0.305 Sum_probs=48.6
Q ss_pred HHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHhhcCCCCChhhHH
Q 015710 25 IALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSPKIVK 104 (402)
Q Consensus 25 i~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~ 104 (402)
|++|.+.|++-+=.|+ +.|++ -+...+..+.++++.+.+.|+++||+.. |.-|.. -||. ...++
T Consensus 22 i~~~~~~Gf~~IFtsl----~~~~~-----~~~~~~~~~~ell~~Anklg~~vivDvn----Psil~~--l~~S-~~~l~ 85 (360)
T COG3589 22 IDRMHKYGFKRIFTSL----LIPEE-----DAELYFHRFKELLKEANKLGLRVIVDVN----PSILKE--LNIS-LDNLS 85 (360)
T ss_pred HHHHHHcCccceeeec----ccCCc-----hHHHHHHHHHHHHHHHHhcCcEEEEEcC----HHHHhh--cCCC-hHHHH
Confidence 7888999988766554 34554 2334678999999999999999999994 887754 4543 33445
Q ss_pred HHHHH
Q 015710 105 DFGDY 109 (402)
Q Consensus 105 ~f~~y 109 (402)
.|.+.
T Consensus 86 ~f~e~ 90 (360)
T COG3589 86 RFQEL 90 (360)
T ss_pred HHHHh
Confidence 55444
No 136
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=33.95 E-value=2.9e+02 Score=27.09 Aligned_cols=107 Identities=16% Similarity=0.187 Sum_probs=63.4
Q ss_pred hHHHHHHHHHcCCC--ceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCCCC-----chhhHhh
Q 015710 21 YKEDIALVKQVGFD--SIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDT-----PQALEDE 93 (402)
Q Consensus 21 ~~eDi~l~~~lG~~--~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~-----P~~l~~~ 93 (402)
..+-++.+++.++. ++=+.+.|..- .+ .-.+|.+..--..++|+.|+++|++.++.+.-+-. |......
T Consensus 26 v~~~~~~~~~~~iP~d~i~lD~~~~~~--~~--~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~~~~~~~~~~~~~ 101 (317)
T cd06600 26 VVEVVDIMQKEGFPYDVVFLDIHYMDS--YR--LFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIRVDQNYSPFLSGM 101 (317)
T ss_pred HHHHHHHHHHcCCCcceEEEChhhhCC--CC--ceeechhcCCCHHHHHHHHHHCCCEEEEEeeccccCCCCChHHHHHH
Confidence 34446777777766 44445556431 11 12344444344578999999999998887653321 2211100
Q ss_pred -------------c------C-----CCCChhhHHHHHHHHHHHHHHhCCcceEEEeecCCCc
Q 015710 94 -------------Y------G-----GFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPET 132 (402)
Q Consensus 94 -------------~------g-----g~~~~~~~~~f~~ya~~~~~~~g~~v~~w~t~NEp~~ 132 (402)
+ | -|+||+..+.|.+..+.+....|- .-+|+=+|||..
T Consensus 102 ~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~~~~~gv-dg~w~D~~Ep~~ 163 (317)
T cd06600 102 DKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEWLNSQGV-DGIWLDMNEPSD 163 (317)
T ss_pred HCCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHHhhcCCC-ceEEeeCCCCcc
Confidence 0 1 268899999888877776554442 246667999864
No 137
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=33.88 E-value=1.3e+02 Score=29.42 Aligned_cols=73 Identities=14% Similarity=0.030 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHCCCeEEEEccCCCCchhhHhhcCCCCChhhHHHHHHHHHHHHHHhCCcceEEEeecCCCcccccccc
Q 015710 60 VDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVGECGYA 139 (402)
Q Consensus 60 ~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~g~~v~~w~t~NEp~~~~~~gy~ 139 (402)
++-+.+.++.++++||++.+.+- +++|. . +.+.+.+=++.+.+.=-+.|+.....-+|+.....-|.
T Consensus 162 ~~~~~~ai~~l~~~gi~v~~~lI-~GlPg---------e---t~e~~~~t~~~l~~l~~d~i~i~~l~~~pgT~L~~~~~ 228 (302)
T TIGR01212 162 FACYVDAVKRARKRGIKVCSHVI-LGLPG---------E---DREEMMETAKIVSLLDVDGIKIHPLHVVKGTKMAKMYE 228 (302)
T ss_pred HHHHHHHHHHHHHcCCEEEEeEE-ECCCC---------C---CHHHHHHHHHHHHhcCCCEEEEEEEEecCCCHHHHHHH
Confidence 35578899999999999776653 35552 2 24556666666544333668888888888876655555
Q ss_pred cCccCC
Q 015710 140 KGTKAP 145 (402)
Q Consensus 140 ~g~~~P 145 (402)
.|.+.|
T Consensus 229 ~g~~~~ 234 (302)
T TIGR01212 229 KGELKT 234 (302)
T ss_pred cCCCCC
Confidence 565544
No 138
>PRK12568 glycogen branching enzyme; Provisional
Probab=33.80 E-value=98 Score=34.36 Aligned_cols=100 Identities=19% Similarity=0.317 Sum_probs=57.8
Q ss_pred hhchHHH-HHHHHHcCCCceeec-c-------ccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEcc--CCCC
Q 015710 18 YFRYKED-IALVKQVGFDSIRFS-I-------SWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF--HWDT 86 (402)
Q Consensus 18 y~~~~eD-i~l~~~lG~~~~R~s-i-------~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~--H~~~ 86 (402)
|.-..+. |+-+|+||++++=+. | +|- -.|.+...-.......+-++.+|++|.++||.+|+.+. |+.-
T Consensus 268 ~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wG-Y~~~~~~a~~~~~G~~~dfk~lV~~~H~~Gi~VIlD~V~nH~~~ 346 (730)
T PRK12568 268 WPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWG-YQPLGLYAPTARHGSPDGFAQFVDACHRAGIGVILDWVSAHFPD 346 (730)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCC-CCCCcCCccCcccCCHHHHHHHHHHHHHCCCEEEEEeccccCCc
Confidence 4444444 688999999998765 2 341 11111000000111245589999999999999999854 4321
Q ss_pred ch---------hhHh----h---cCC-------CCChhhHHHHHHHHHHHHHHhC
Q 015710 87 PQ---------ALED----E---YGG-------FLSPKIVKDFGDYADLCFKEFG 118 (402)
Q Consensus 87 P~---------~l~~----~---~gg-------~~~~~~~~~f~~ya~~~~~~~g 118 (402)
-. .+.. . +.. +.++++.+.+.+=+..-+++|+
T Consensus 347 d~~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~eyh 401 (730)
T PRK12568 347 DAHGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHYH 401 (730)
T ss_pred cccccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHhC
Confidence 00 0110 0 011 3456777888888888888886
No 139
>PF09585 Lin0512_fam: Conserved hypothetical protein (Lin0512_fam); InterPro: IPR011719 This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N terminus.
Probab=33.73 E-value=36 Score=28.50 Aligned_cols=31 Identities=23% Similarity=0.358 Sum_probs=27.1
Q ss_pred EEEeecCCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHc
Q 015710 287 IYITENGVGDVNSSSWPISYALNDTVRVNYYNDHLSYILEAINS 330 (402)
Q Consensus 287 I~ITENG~~~~~~~~~~~~~~i~D~~Ri~yl~~hl~~v~~Ai~~ 330 (402)
.+|+|.|++. |..+.+|-+.-..+++.||..
T Consensus 2 r~~iE~GmG~-------------DlhGqD~TkAA~RAv~DAI~~ 32 (113)
T PF09585_consen 2 RLFIEMGMGN-------------DLHGQDYTKAAVRAVRDAISH 32 (113)
T ss_pred eEEEEecccc-------------cccCCcHHHHHHHHHHHHHhh
Confidence 5899999995 677888999999999999986
No 140
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=33.71 E-value=97 Score=34.18 Aligned_cols=58 Identities=12% Similarity=0.241 Sum_probs=36.2
Q ss_pred HHHHHHcCCCceeec-c-ccCc--------------ccccCC--CCCCCCh-hHHHHHHHHHHHHHHCCCeEEEEcc
Q 015710 25 IALVKQVGFDSIRFS-I-SWSR--------------ILPHGN--ISGGVNQ-QGVDFYNNLINELISNGLTPFVTLF 82 (402)
Q Consensus 25 i~l~~~lG~~~~R~s-i-~W~r--------------i~P~~~--~~g~~n~-~~~~~y~~~i~~l~~~gi~p~vtL~ 82 (402)
|+-||+||++++=+. | +... --|... +++.+-. ..++=+++||++|.++||++|+.+.
T Consensus 190 LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDvV 266 (688)
T TIGR02100 190 IDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDVV 266 (688)
T ss_pred hHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 789999999999877 2 2210 011100 0011100 1245689999999999999999754
No 141
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=33.56 E-value=2.6e+02 Score=28.00 Aligned_cols=88 Identities=17% Similarity=0.217 Sum_probs=61.5
Q ss_pred CCcccchhhhchHHHHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCCCCchh
Q 015710 10 NGDVADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQA 89 (402)
Q Consensus 10 ~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~ 89 (402)
.+=+|.=|++ |+--+ ...+.|+..+|+. | |.+-. -+..+.+++.++++|+-.=+...|-.++.-
T Consensus 73 iPlVADIHFd-~~lAl-~a~~~g~dkiRIN---------P---GNig~--~e~v~~vv~~ak~~~ipIRIGVN~GSL~~~ 136 (346)
T TIGR00612 73 VPLVADIHFD-YRLAA-LAMAKGVAKVRIN---------P---GNIGF--RERVRDVVEKARDHGKAMRIGVNHGSLERR 136 (346)
T ss_pred CCEEEeeCCC-cHHHH-HHHHhccCeEEEC---------C---CCCCC--HHHHHHHHHHHHHCCCCEEEecCCCCCcHH
Confidence 3445555775 34333 2446799999974 3 54432 267899999999999999999999999999
Q ss_pred hHhhcCCCCChhhHHHHHHHHHHH
Q 015710 90 LEDEYGGFLSPKIVKDFGDYADLC 113 (402)
Q Consensus 90 l~~~~gg~~~~~~~~~f~~ya~~~ 113 (402)
+.++||+=+.+-.++.-.++++.+
T Consensus 137 ~~~kyg~~t~eamveSAl~~v~~l 160 (346)
T TIGR00612 137 LLEKYGDATAEAMVQSALEEAAIL 160 (346)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHH
Confidence 988876533344566656666553
No 142
>PRK12677 xylose isomerase; Provisional
Probab=33.56 E-value=3.9e+02 Score=27.18 Aligned_cols=91 Identities=19% Similarity=0.204 Sum_probs=53.6
Q ss_pred chHHHHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEE-EEccCCCCchhhHhhcCCCC
Q 015710 20 RYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPF-VTLFHWDTPQALEDEYGGFL 98 (402)
Q Consensus 20 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~-vtL~H~~~P~~l~~~~gg~~ 98 (402)
...|-++.++++|+..+=+.. ..+.|-.. ...+--+...++-+.+.+.||++. +|...|..|.+. .|++.
T Consensus 32 ~~~E~v~~~a~~Gf~gVElh~--~~l~p~~~----~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~~---~g~lt 102 (384)
T PRK12677 32 DPVEAVHKLAELGAYGVTFHD--DDLVPFGA----TDAERDRIIKRFKKALDETGLVVPMVTTNLFTHPVFK---DGAFT 102 (384)
T ss_pred CHHHHHHHHHHhCCCEEEecc--cccCCCCC----ChhhhHHHHHHHHHHHHHcCCeeEEEecCCCCCcccc---CCcCC
Confidence 468889999999999885532 23444321 111111246788888899999976 555555556442 37887
Q ss_pred Chh-hHHHH-HHHHHHH---HHHhCC
Q 015710 99 SPK-IVKDF-GDYADLC---FKEFGD 119 (402)
Q Consensus 99 ~~~-~~~~f-~~ya~~~---~~~~g~ 119 (402)
+++ .+..+ .++.+.+ +..+|-
T Consensus 103 s~d~~~R~~Ai~~~~r~IdlA~eLGa 128 (384)
T PRK12677 103 SNDRDVRRYALRKVLRNIDLAAELGA 128 (384)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 743 22222 3344433 556764
No 143
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=33.53 E-value=1.2e+02 Score=31.69 Aligned_cols=76 Identities=16% Similarity=0.232 Sum_probs=47.9
Q ss_pred HHHHHHHHHcCCCceeeccc-cC-cccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHhhcCCCCC
Q 015710 22 KEDIALVKQVGFDSIRFSIS-WS-RILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLS 99 (402)
Q Consensus 22 ~eDi~l~~~lG~~~~R~si~-W~-ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~ 99 (402)
+|.+++|+++|++.+-++++ -+ ++.-.- .-..+ ++.+.+.++.++++||.+.+++- +++|. .+
T Consensus 287 ~e~l~~l~~aG~~~v~iGiES~s~~~L~~~--~K~~~---~~~~~~~i~~~~~~Gi~v~~~~I-iGlPg---------et 351 (472)
T TIGR03471 287 YETLKVMKENGLRLLLVGYESGDQQILKNI--KKGLT---VEIARRFTRDCHKLGIKVHGTFI-LGLPG---------ET 351 (472)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCHHHHHHh--cCCCC---HHHHHHHHHHHHHCCCeEEEEEE-EeCCC---------CC
Confidence 56789999999998888873 32 121110 01122 35678999999999999887764 35552 34
Q ss_pred hhhHHHHHHHHHH
Q 015710 100 PKIVKDFGDYADL 112 (402)
Q Consensus 100 ~~~~~~f~~ya~~ 112 (402)
.+.+..-.+|+..
T Consensus 352 ~e~~~~ti~~~~~ 364 (472)
T TIGR03471 352 RETIRKTIDFAKE 364 (472)
T ss_pred HHHHHHHHHHHHh
Confidence 4445555555443
No 144
>PLN02960 alpha-amylase
Probab=33.13 E-value=85 Score=35.50 Aligned_cols=102 Identities=11% Similarity=0.158 Sum_probs=58.8
Q ss_pred hhhhchHHH-HHHHHHcCCCceeec-cc-------cCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEcc--CC
Q 015710 16 NFYFRYKED-IALVKQVGFDSIRFS-IS-------WSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF--HW 84 (402)
Q Consensus 16 d~y~~~~eD-i~l~~~lG~~~~R~s-i~-------W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~--H~ 84 (402)
..|.-..+. +.-+|+||++++=+. |. |- -.+.....-.......+=++.+|++|.++||.+|+.+. |+
T Consensus 413 gtf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swG-Y~~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~VILDvV~NH~ 491 (897)
T PLN02960 413 SSFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVG-YKVTNFFAVSSRFGTPDDFKRLVDEAHGLGLLVFLDIVHSYA 491 (897)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCC-CCcccCCCcccccCCHHHHHHHHHHHHHCCCEEEEEeccccc
Confidence 345555544 899999999998776 21 21 00000000000011234579999999999999999864 43
Q ss_pred CC--c--h---------hhHh--h--cCCC-------CChhhHHHHHHHHHHHHHHhC
Q 015710 85 DT--P--Q---------ALED--E--YGGF-------LSPKIVKDFGDYADLCFKEFG 118 (402)
Q Consensus 85 ~~--P--~---------~l~~--~--~gg~-------~~~~~~~~f~~ya~~~~~~~g 118 (402)
.. + . ++.. . ...| .++++.+.+.+=++.-++.|+
T Consensus 492 ~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~Eyh 549 (897)
T PLN02960 492 AADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTEYR 549 (897)
T ss_pred CCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHHHC
Confidence 21 1 1 1110 0 0012 346677888888888888886
No 145
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=32.91 E-value=3.6e+02 Score=26.48 Aligned_cols=110 Identities=15% Similarity=0.157 Sum_probs=61.0
Q ss_pred hHHHHHHHHHcCCCc--eeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCCCC---chhhH--hh
Q 015710 21 YKEDIALVKQVGFDS--IRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDT---PQALE--DE 93 (402)
Q Consensus 21 ~~eDi~l~~~lG~~~--~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~---P~~l~--~~ 93 (402)
..+-++.+++.|+.. +=+.+.|....-.....-.+|.+..---.+||++|+++|++.++.++-+-. |..-+ ++
T Consensus 31 v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~~~~~~y~e~~~~ 110 (317)
T cd06599 31 LLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLLQDHPRYKELKEA 110 (317)
T ss_pred HHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCcccCCCHHHHHHHHC
Confidence 344567888888754 333444543311000001233333233579999999999999987764422 22100 00
Q ss_pred ------------c-----CC------CCChhhHHHHHHHHHHHHHHhCCcc-eEEEeecCCCc
Q 015710 94 ------------Y-----GG------FLSPKIVKDFGDYADLCFKEFGDRV-KHWITLNEPET 132 (402)
Q Consensus 94 ------------~-----gg------~~~~~~~~~f~~ya~~~~~~~g~~v-~~w~t~NEp~~ 132 (402)
+ +| ++|++..+.|.+..+..+...| | -+|+=+|||.+
T Consensus 111 g~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~G--vdg~w~D~~E~~~ 171 (317)
T cd06599 111 GAFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEGVKEALLDLG--IDSTWNDNNEYEI 171 (317)
T ss_pred CcEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHHHHHHHHhcCC--CcEEEecCCCCcc
Confidence 0 01 4678888887776655554443 5 45666999974
No 146
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=32.66 E-value=71 Score=37.66 Aligned_cols=59 Identities=15% Similarity=0.265 Sum_probs=36.8
Q ss_pred HHHHHHHHcCCCceeeccccCccc----------------ccCC--CCCCCChhHHHHHHHHHHHHHHCCCeEEEEc
Q 015710 23 EDIALVKQVGFDSIRFSISWSRIL----------------PHGN--ISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (402)
Q Consensus 23 eDi~l~~~lG~~~~R~si~W~ri~----------------P~~~--~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 81 (402)
+.|+-+|+||++++=+.--..... |... ++..+-...++=+++||++|.++||++|+.+
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDv 267 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDV 267 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEE
Confidence 557899999999997762111110 0000 0001100145568999999999999999974
No 147
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=32.40 E-value=1.3e+02 Score=30.54 Aligned_cols=112 Identities=18% Similarity=0.297 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHCCCeEEEEccCCCCchhhHhhcCC--CCChhhHHHHHHHHHHHH--------HHhCCcceEEEe-ecC
Q 015710 61 DFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGG--FLSPKIVKDFGDYADLCF--------KEFGDRVKHWIT-LNE 129 (402)
Q Consensus 61 ~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg--~~~~~~~~~f~~ya~~~~--------~~~g~~v~~w~t-~NE 129 (402)
++..+.+.+++.+|+... .|.--.-|.|--+ +.+ |+..+....+.+|++-+. +++++.+..-.+ +|.
T Consensus 153 ~~l~~fv~~m~~nGvnly-alSVQNEPd~~p~-~d~~~wtpQe~~rF~~qyl~si~~~~rV~~pes~~~~~~~~dp~lnD 230 (433)
T COG5520 153 DYLNDFVLEMKNNGVNLY-ALSVQNEPDYAPT-YDWCWWTPQEELRFMRQYLASINAEMRVIIPESFKDLPNMSDPILND 230 (433)
T ss_pred HHHHHHHHHHHhCCCcee-EEeeccCCcccCC-CCcccccHHHHHHHHHHhhhhhccccEEecchhcccccccccccccC
Q ss_pred CCcccccccccC---------------ccCCCCCCCCCCCCCCCCCCC-----hHHHHHHHHHHH
Q 015710 130 PETVGECGYAKG---------------TKAPGRCSNYIGNCPAGNSAT-----EPYVAAHHLILS 174 (402)
Q Consensus 130 p~~~~~~gy~~g---------------~~~Pg~~~~~~~~~~~g~~~~-----~~~~~~~nll~A 174 (402)
|...+.+-.+.+ ..+|..++.+.+.|..+++.. +.+.+..|+..+
T Consensus 231 p~a~a~~~ilg~H~Ygg~v~~~p~~lak~~~~gKdlwmte~y~~esd~~s~dr~~~~~~~hi~~g 295 (433)
T COG5520 231 PKALANMDILGTHLYGGQVSDQPYPLAKQKPAGKDLWMTECYPPESDPNSADREALHVALHIHIG 295 (433)
T ss_pred HhHhcccceeEeeecccccccchhhHhhCCCcCCceEEeecccCCCCCCcchHHHHHHHHHHHhh
No 148
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=32.36 E-value=1.7e+02 Score=31.20 Aligned_cols=107 Identities=19% Similarity=0.173 Sum_probs=65.8
Q ss_pred HHHHHHHHHcCCCceeeccc--cCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHhhcCCCCC
Q 015710 22 KEDIALVKQVGFDSIRFSIS--WSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLS 99 (402)
Q Consensus 22 ~eDi~l~~~lG~~~~R~si~--W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~ 99 (402)
++.+++|+++|++.+-+++. -.+++-.-. +| .+ ++-..+.++.+++.|+++.+.|- +++|. .
T Consensus 206 ~e~L~~L~~~G~~rVslGVQS~~d~VL~~in-Rg-ht---~~~v~~Ai~~lr~~G~~v~~~LM-~GLPg---------q- 269 (522)
T TIGR01211 206 EEHIDRMLKLGATRVELGVQTIYNDILERTK-RG-HT---VRDVVEATRLLRDAGLKVVYHIM-PGLPG---------S- 269 (522)
T ss_pred HHHHHHHHHcCCCEEEEECccCCHHHHHHhC-CC-CC---HHHHHHHHHHHHHcCCeEEEEee-cCCCC---------C-
Confidence 67799999999987777762 222221110 12 12 34567889999999998666653 45663 1
Q ss_pred hhhHHHHHHHHHHHHH--HhC-CcceEEEeecCCCcccccccccCccCCC
Q 015710 100 PKIVKDFGDYADLCFK--EFG-DRVKHWITLNEPETVGECGYAKGTKAPG 146 (402)
Q Consensus 100 ~~~~~~f~~ya~~~~~--~~g-~~v~~w~t~NEp~~~~~~gy~~g~~~Pg 146 (402)
+.+.+.+=++.+++ .++ |.|+.+.+.=.|......-|..|.|.|.
T Consensus 270 --t~e~~~~t~~~l~~~~~l~pD~Ikiypl~V~~gT~L~~~~~~G~y~p~ 317 (522)
T TIGR01211 270 --SFERDLEMFREIFEDPRFKPDMLKIYPTLVTRGTELYELWKRGEYKPY 317 (522)
T ss_pred --CHHHHHHHHHHHHhccCCCcCEEEEecceeeCCCHHHHHHHcCCCCCC
Confidence 23455555556665 354 5688887766776655444666766664
No 149
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=32.32 E-value=1.8e+02 Score=29.16 Aligned_cols=96 Identities=18% Similarity=0.269 Sum_probs=55.2
Q ss_pred hHHHHHHHHHcCCCceeeccc-c-CcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEE-EEccCCCCchhhHhhcCCC
Q 015710 21 YKEDIALVKQVGFDSIRFSIS-W-SRILPHGNISGGVNQQGVDFYNNLINELISNGLTPF-VTLFHWDTPQALEDEYGGF 97 (402)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~-W-~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~-vtL~H~~~P~~l~~~~gg~ 97 (402)
-++.+++|+++|++.+-++++ = .++...- ....+ .+-..+.|+.+++.|+..+ +.+ =+++|.
T Consensus 99 ~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l--~r~~~---~~~~~~~i~~l~~~g~~~v~~dl-i~GlPg--------- 163 (377)
T PRK08599 99 TKEKLQVLKDSGVNRISLGVQTFNDELLKKI--GRTHN---EEDVYEAIANAKKAGFDNISIDL-IYALPG--------- 163 (377)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHHc--CCCCC---HHHHHHHHHHHHHcCCCcEEEee-ecCCCC---------
Confidence 367899999999997776662 2 2333221 02223 3457889999999999744 333 346663
Q ss_pred CChhhHHHHHHHHHHHHHHhC-CcceEEEeecCCCcccc
Q 015710 98 LSPKIVKDFGDYADLCFKEFG-DRVKHWITLNEPETVGE 135 (402)
Q Consensus 98 ~~~~~~~~f~~ya~~~~~~~g-~~v~~w~t~NEp~~~~~ 135 (402)
.+. +.|.+=.+.+.+ ++ +.|..+...-+|.....
T Consensus 164 qt~---~~~~~~l~~~~~-l~~~~i~~y~l~~~pgT~~~ 198 (377)
T PRK08599 164 QTI---EDFKESLAKALA-LDIPHYSAYSLILEPKTVFY 198 (377)
T ss_pred CCH---HHHHHHHHHHHc-cCCCEEeeeceeecCCChhH
Confidence 233 344444444433 43 34555555567765443
No 150
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=31.78 E-value=97 Score=29.75 Aligned_cols=67 Identities=16% Similarity=0.152 Sum_probs=48.0
Q ss_pred HHHHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHhhcCCCCChh
Q 015710 22 KEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSPK 101 (402)
Q Consensus 22 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~ 101 (402)
.+|++...+.|++.+|+++..+ .++-..++++.++++|+++.+++-+-. + .
T Consensus 85 ~~~l~~a~~~gv~~iri~~~~~---------------~~~~~~~~i~~ak~~G~~v~~~~~~a~----------~----~ 135 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAFHKH---------------EFDEALPLIKAIKEKGYEVFFNLMAIS----------G----Y 135 (266)
T ss_pred HHHHHHHhcCCcCEEEEecccc---------------cHHHHHHHHHHHHHCCCeEEEEEEeec----------C----C
Confidence 4678888888888888876332 245678899999999999999885411 1 2
Q ss_pred hHHHHHHHHHHHHHHhC
Q 015710 102 IVKDFGDYADLCFKEFG 118 (402)
Q Consensus 102 ~~~~f~~ya~~~~~~~g 118 (402)
..+.+.++++.+.+ .|
T Consensus 136 ~~~~~~~~~~~~~~-~g 151 (266)
T cd07944 136 SDEELLELLELVNE-IK 151 (266)
T ss_pred CHHHHHHHHHHHHh-CC
Confidence 35677778887654 45
No 151
>TIGR02058 lin0512_fam conserved hypothetical protein. This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N-terminus.
Probab=31.68 E-value=38 Score=28.50 Aligned_cols=31 Identities=29% Similarity=0.317 Sum_probs=27.3
Q ss_pred EEEeecCCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHc
Q 015710 287 IYITENGVGDVNSSSWPISYALNDTVRVNYYNDHLSYILEAINS 330 (402)
Q Consensus 287 I~ITENG~~~~~~~~~~~~~~i~D~~Ri~yl~~hl~~v~~Ai~~ 330 (402)
.+|+|.|++. |..+.+|-+.-..+++.||..
T Consensus 2 rl~iEmGmG~-------------DlhGqD~TkAA~RAvrDAI~h 32 (116)
T TIGR02058 2 ILFIEMGMGV-------------DQHGQNITKAAMRAVRNAIAS 32 (116)
T ss_pred eEEEEecccc-------------cccCccHHHHHHHHHHHHHhh
Confidence 5899999995 778889999999999999986
No 152
>PF04646 DUF604: Protein of unknown function, DUF604; InterPro: IPR006740 This family includes a conserved region found in several uncharacterised plant proteins.
Probab=31.31 E-value=24 Score=33.75 Aligned_cols=72 Identities=15% Similarity=0.207 Sum_probs=40.6
Q ss_pred HHHHCCCeEEEEccCCCCchhhHhhcCCCCChhhHHHHHHHHHHHHHHhCCcceEEEeecCCCcccccccccCcc
Q 015710 69 ELISNGLTPFVTLFHWDTPQALEDEYGGFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVGECGYAKGTK 143 (402)
Q Consensus 69 ~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~g~~v~~w~t~NEp~~~~~~gy~~g~~ 143 (402)
-+.++.+.|+++||||+.=..+ +.+....+.++++.+-|+.--.++-.+-.-|---....+.+-.||..-.+
T Consensus 76 ~~~a~~~~pl~SlHH~~~~~Pi---fP~~~~~~al~~L~~a~~~d~~~~lqqsicyd~~~~wsvsVSwGYsVqvy 147 (255)
T PF04646_consen 76 FLEAHPLAPLVSLHHWDSVDPI---FPNMSRLQALRHLLKAAKVDPARILQQSICYDRRRNWSVSVSWGYSVQVY 147 (255)
T ss_pred eeecCCCCceeeeeehhhcccc---CCCCCHHHHHHHHHHHHhhChHhhhheeeeccCceEEEEEEEccEEEEEE
Confidence 3455578999999999973222 34555566777777755543333322211222222333445678887665
No 153
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=31.16 E-value=2.1e+02 Score=27.22 Aligned_cols=90 Identities=14% Similarity=0.172 Sum_probs=55.1
Q ss_pred hHHHHHHHHHcCCC--ceeeccccCcccccCCCCC--CCChhHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHhhcCC
Q 015710 21 YKEDIALVKQVGFD--SIRFSISWSRILPHGNISG--GVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGG 96 (402)
Q Consensus 21 ~~eDi~l~~~lG~~--~~R~si~W~ri~P~~~~~g--~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg 96 (402)
..+-++.+++.|+. ++=+.+.|..-. +. - .+|.+...-..++|+.|+++|++.++.+. |.-
T Consensus 26 v~~~~~~~~~~~iP~d~~~lD~~~~~~~--~~--f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~----P~v------- 90 (265)
T cd06589 26 VLEVIDGMRENDIPLDGFVLDDDYTDGY--GD--FTFDWDAGKFPNPKSMIDELHDNGVKLVLWID----PYI------- 90 (265)
T ss_pred HHHHHHHHHHcCCCccEEEECcccccCC--ce--eeeecChhhCCCHHHHHHHHHHCCCEEEEEeC----hhH-------
Confidence 45557788887766 566666665432 21 2 44544444458999999999999998773 321
Q ss_pred CCChhhHHHHHHHHHHHHHHhCCcce-EEEeecCCCcc
Q 015710 97 FLSPKIVKDFGDYADLCFKEFGDRVK-HWITLNEPETV 133 (402)
Q Consensus 97 ~~~~~~~~~f~~ya~~~~~~~g~~v~-~w~t~NEp~~~ 133 (402)
.+.|.+..+.+. +...|+ +|+=+|||...
T Consensus 91 ------~~w~~~~~~~~~--~~~Gvdg~w~D~~E~~~~ 120 (265)
T cd06589 91 ------REWWAEVVKKLL--VSLGVDGFWTDMGEPSPG 120 (265)
T ss_pred ------HHHHHHHHHHhh--ccCCCCEEeccCCCCCcC
Confidence 445555444332 223354 55669999754
No 154
>TIGR01589 A_thal_3526 uncharacterized plant-specific domain TIGR01589. This model represents an uncharacterized plant-specific domain 57 residues in length. It is found toward the N-terminus of most proteins that contain it. Examples include at least 10 proteins from Arabidopsis thaliana and at least one from Oryza sativa.
Probab=30.86 E-value=57 Score=23.88 Aligned_cols=36 Identities=19% Similarity=0.166 Sum_probs=25.7
Q ss_pred HHHHHHHHH-CCCeEEEEccCCCCchhhHhhcCCCCChhhHHHHHHHH
Q 015710 64 NNLINELIS-NGLTPFVTLFHWDTPQALEDEYGGFLSPKIVKDFGDYA 110 (402)
Q Consensus 64 ~~~i~~l~~-~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya 110 (402)
+++++.|.+ .||+|.+|. ..|-. +-.++.+.|..|-
T Consensus 19 ~E~v~~L~~~a~I~P~~T~-----~VW~~------LekeN~eFF~aY~ 55 (57)
T TIGR01589 19 EETVSFLFENAGISPKFTR-----FVWYL------LEKENADFFRCYK 55 (57)
T ss_pred HHHHHHHHHHcCCCchhHH-----HHHHH------HHHHHHHHHHHHh
Confidence 677777765 799999887 46743 3366777887773
No 155
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=30.46 E-value=1.1e+02 Score=28.23 Aligned_cols=44 Identities=23% Similarity=0.273 Sum_probs=35.0
Q ss_pred HHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEc
Q 015710 25 IALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (402)
Q Consensus 25 i~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 81 (402)
.+++|++|++..=++=|=.| +.+. | ..+-+..++++||+|+++.
T Consensus 74 ~~mLkd~G~~~viiGHSERR-f~Et------d------i~~Kv~~a~~~gl~~IvCi 117 (205)
T TIGR00419 74 AEMLKDIGAKGTLINHSERR-MKLA------D------IEKKIARLKELGLTSVVCT 117 (205)
T ss_pred HHHHHHcCCCEEEECcccCC-CCcc------H------HHHHHHHHHHCCCEEEEEE
Confidence 47899999998888877666 3222 2 3778899999999999999
No 156
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=30.40 E-value=83 Score=29.74 Aligned_cols=61 Identities=10% Similarity=-0.007 Sum_probs=40.0
Q ss_pred hhhchHHHHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEE
Q 015710 17 FYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVT 80 (402)
Q Consensus 17 ~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vt 80 (402)
....++.-+++++.+|.+.+++........++. ...-...++.++.+.+.+.++||+..+=
T Consensus 88 ~~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~---~~~~~~~~~~l~~l~~~a~~~gv~l~iE 148 (275)
T PRK09856 88 SLDMIKLAMDMAKEMNAGYTLISAAHAGYLTPP---NVIWGRLAENLSELCEYAENIGMDLILE 148 (275)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCCCCCCCCCH---HHHHHHHHHHHHHHHHHHHHcCCEEEEe
Confidence 455666778999999999999864322111111 1111334577888889999999977554
No 157
>PTZ00445 p36-lilke protein; Provisional
Probab=30.24 E-value=96 Score=29.06 Aligned_cols=55 Identities=18% Similarity=0.262 Sum_probs=39.7
Q ss_pred HHHHHHcCCCceeeccccCcccc-cCCCCCCCChh---------HHHHHHHHHHHHHHCCCeEEEEcc
Q 015710 25 IALVKQVGFDSIRFSISWSRILP-HGNISGGVNQQ---------GVDFYNNLINELISNGLTPFVTLF 82 (402)
Q Consensus 25 i~l~~~lG~~~~R~si~W~ri~P-~~~~~g~~n~~---------~~~~y~~~i~~l~~~gi~p~vtL~ 82 (402)
++++++.|++.+=+.+.=.-|.- +| |-.++. +-.-...++.+|+++||..+|..+
T Consensus 35 v~~L~~~GIk~Va~D~DnTlI~~Hsg---G~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTf 99 (219)
T PTZ00445 35 VDLLNECGIKVIASDFDLTMITKHSG---GYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTF 99 (219)
T ss_pred HHHHHHcCCeEEEecchhhhhhhhcc---cccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEc
Confidence 68999999999988877655531 22 322222 224468899999999999998876
No 158
>PF09713 A_thal_3526: Plant protein 1589 of unknown function (A_thal_3526); InterPro: IPR006476 This plant-specific family of proteins are defined by an uncharacterised region 57 residues in length. It is found toward the N terminus of most proteins that contain it. Examples include at least several proteins from Arabidopsis thaliana (Mouse-ear cress) and Oryza sativa (Rice). The function of the proteins are unknown.
Probab=29.89 E-value=42 Score=24.31 Aligned_cols=36 Identities=17% Similarity=0.184 Sum_probs=25.0
Q ss_pred HHHHHHHH-HCCCeEEEEccCCCCchhhHhhcCCCCChhhHHHHHHHH
Q 015710 64 NNLINELI-SNGLTPFVTLFHWDTPQALEDEYGGFLSPKIVKDFGDYA 110 (402)
Q Consensus 64 ~~~i~~l~-~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya 110 (402)
+++++.|. ..||+|.+|. ..|-. +..++.+.|..|-
T Consensus 16 ~E~v~~L~~~a~I~P~~T~-----~VW~~------Le~eN~eFF~aY~ 52 (54)
T PF09713_consen 16 EECVRALQKQANIEPVFTS-----TVWQK------LEKENPEFFKAYY 52 (54)
T ss_pred HHHHHHHHHHcCCChHHHH-----HHHHH------HHHHCHHHHHHhh
Confidence 67888885 5599999887 46643 3355667777663
No 159
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=29.77 E-value=1.9e+02 Score=28.80 Aligned_cols=65 Identities=17% Similarity=0.341 Sum_probs=44.8
Q ss_pred hHHHHHHHHHcCCCceeeccc----c-------CcccccCC-------CCCCCChhHHHHHHHHHHHHHHCCCeEEEEcc
Q 015710 21 YKEDIALVKQVGFDSIRFSIS----W-------SRILPHGN-------ISGGVNQQGVDFYNNLINELISNGLTPFVTLF 82 (402)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~----W-------~ri~P~~~-------~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~ 82 (402)
.++-|+.|+..++|.+.+-++ | +.+-..+. ..|.+.. +=++++++-++++||++|.-+
T Consensus 20 lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~---~di~elv~yA~~rgI~vIPEi- 95 (329)
T cd06568 20 VKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQ---EDYKDIVAYAAERHITVVPEI- 95 (329)
T ss_pred HHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCH---HHHHHHHHHHHHcCCEEEEec-
Confidence 566689999999998777663 3 22211110 0133444 346999999999999999888
Q ss_pred CCCCchhhH
Q 015710 83 HWDTPQALE 91 (402)
Q Consensus 83 H~~~P~~l~ 91 (402)
|+|....
T Consensus 96 --D~PGH~~ 102 (329)
T cd06568 96 --DMPGHTN 102 (329)
T ss_pred --CCcHHHH
Confidence 8887653
No 160
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=29.74 E-value=1.4e+02 Score=28.44 Aligned_cols=48 Identities=17% Similarity=0.246 Sum_probs=36.2
Q ss_pred HHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEc
Q 015710 25 IALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (402)
Q Consensus 25 i~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 81 (402)
.++||++|++.+=++=|=.|-. +++ .-+...+-+..++++||+|+++.
T Consensus 77 ~~mL~d~G~~~viiGHSERR~~--------f~E-t~~~i~~Kv~~a~~~gl~pIvCi 124 (242)
T cd00311 77 AEMLKDAGAKYVIIGHSERRQY--------FGE-TDEDVAKKVKAALEAGLTPILCV 124 (242)
T ss_pred HHHHHHcCCCEEEeCcccccCc--------CCC-CcHHHHHHHHHHHHCCCEEEEEe
Confidence 5899999999888886544432 111 12456888999999999999999
No 161
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=29.58 E-value=1.8e+02 Score=28.17 Aligned_cols=60 Identities=23% Similarity=0.400 Sum_probs=47.2
Q ss_pred hHHHHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEc
Q 015710 21 YKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (402)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 81 (402)
-.+|++.+.+.|++.+-+.++=|...-.... +.=-.+.++.+.+++..++++|+++-+++
T Consensus 76 ~~~die~A~~~g~~~v~i~~s~S~~~~~~~~-~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ 135 (279)
T cd07947 76 NKEDLKLVKEMGLKETGILMSVSDYHIFKKL-KMTREEAMEKYLEIVEEALDHGIKPRCHL 135 (279)
T ss_pred CHHHHHHHHHcCcCEEEEEEcCCHHHHHHHh-CcCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4789999999999999888876655433211 33345678999999999999999998888
No 162
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=29.38 E-value=3.4e+02 Score=24.16 Aligned_cols=51 Identities=22% Similarity=0.392 Sum_probs=35.3
Q ss_pred HHHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCCCCc
Q 015710 23 EDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTP 87 (402)
Q Consensus 23 eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P 87 (402)
-|.+.+|+.|++.+=+=+. +|. +..|. .+..-++.++++||. +..+||-.|
T Consensus 12 id~~~~k~~gi~fviiKat------eG~--~y~D~----~~~~~~~~a~~aGl~--~G~Yhy~~~ 62 (184)
T cd06525 12 INFNAVKDSGVEVVYIKAT------EGT--TFVDS----YFNENYNGAKAAGLK--VGFYHFLVG 62 (184)
T ss_pred CCHHHHHhCCCeEEEEEec------CCC--cccCH----hHHHHHHHHHHCCCc--eEEEEEeeC
Confidence 3678888888764433221 342 45675 688999999999993 588887665
No 163
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=29.30 E-value=1.3e+02 Score=36.55 Aligned_cols=56 Identities=16% Similarity=0.297 Sum_probs=41.5
Q ss_pred hhchHHHHHHHHHcCCCceeeccccC---------------cccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEc
Q 015710 18 YFRYKEDIALVKQVGFDSIRFSISWS---------------RILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (402)
Q Consensus 18 y~~~~eDi~l~~~lG~~~~R~si~W~---------------ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 81 (402)
+....+-+.-+++||++++=+|--+. +|.|.- | +.+-+++++++|+++||.+|+.+
T Consensus 757 f~~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~l---G-----~~edf~~Lv~~ah~~Gi~vilDi 827 (1693)
T PRK14507 757 FADAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEI---G-----GEEGFERFCAALKAHGLGQLLDI 827 (1693)
T ss_pred HHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCccc---C-----CHHHHHHHHHHHHHCCCEEEEEe
Confidence 44567778999999999997774443 222221 1 34568999999999999999986
No 164
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=29.14 E-value=1.5e+02 Score=26.07 Aligned_cols=64 Identities=14% Similarity=0.032 Sum_probs=41.1
Q ss_pred hhhchHHHHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEc
Q 015710 17 FYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (402)
Q Consensus 17 ~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 81 (402)
.....++-+++++.+|++.+++...+-...+... ...--...++.++++.+.+.+.|+++.+=.
T Consensus 69 ~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~-~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~ 132 (213)
T PF01261_consen 69 ALEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDD-TEENWERLAENLRELAEIAEEYGVRIALEN 132 (213)
T ss_dssp HHHHHHHHHHHHHHHTBSEEEEECTTESSSTTSS-HHHHHHHHHHHHHHHHHHHHHHTSEEEEE-
T ss_pred HHHHHHHHHHHHHHhCCCceeecCcccccccCCC-HHHHHHHHHHHHHHHHhhhhhhcceEEEec
Confidence 3566788899999999999999976411111110 000111235778888888899998876543
No 165
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=29.06 E-value=2.1e+02 Score=28.25 Aligned_cols=64 Identities=11% Similarity=0.165 Sum_probs=45.7
Q ss_pred hHHHHHHHHHcCCCceeecc----ccCc---ccccCC----CCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCCCCchh
Q 015710 21 YKEDIALVKQVGFDSIRFSI----SWSR---ILPHGN----ISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQA 89 (402)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si----~W~r---i~P~~~----~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~ 89 (402)
.++=|+.|+..++|.+.+-+ +|.- -.|+-+ ..|.+.. +-+.++++-++++||++|.-+ |+|..
T Consensus 20 ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT~---~di~elv~yA~~rgI~vIPEI---d~PGH 93 (311)
T cd06570 20 IKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYTQ---EQIREVVAYARDRGIRVVPEI---DVPGH 93 (311)
T ss_pred HHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccCH---HHHHHHHHHHHHcCCEEEEee---cCccc
Confidence 45558999999999877765 5632 233311 0134555 346999999999999999888 88875
Q ss_pred h
Q 015710 90 L 90 (402)
Q Consensus 90 l 90 (402)
.
T Consensus 94 ~ 94 (311)
T cd06570 94 A 94 (311)
T ss_pred h
Confidence 4
No 166
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=28.66 E-value=4.4e+02 Score=26.87 Aligned_cols=90 Identities=22% Similarity=0.296 Sum_probs=59.1
Q ss_pred CcccchhhhchHHHHHHHHHc-CCCceeecc--ccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEE-EEccCCCC
Q 015710 11 GDVADNFYFRYKEDIALVKQV-GFDSIRFSI--SWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPF-VTLFHWDT 86 (402)
Q Consensus 11 ~~~a~d~y~~~~eDi~l~~~l-G~~~~R~si--~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~-vtL~H~~~ 86 (402)
++.+.+-.++ -+|++.++.+ ++. .++++ .| + ... .+.++.+.++++||+.. ++...|..
T Consensus 33 ~g~~r~~~e~-~~d~~~v~~L~~~~-~~v~lH~~~------d---~~~------d~~~~~~~l~~~GL~v~~i~p~~f~~ 95 (378)
T TIGR02635 33 EGAARNVFEK-IEDAALVHRLTGIC-PTVALHIPW------D---RVE------DYEELARYAEELGLKIGAINPNLFQD 95 (378)
T ss_pred CCCCCCHHHH-HHHHHHHHhhcCCC-CceeeccCC------c---ccc------CHHHHHHHHHHcCCceeeeeCCccCC
Confidence 3445555555 6788888888 555 66665 44 2 112 25778888999999998 77776766
Q ss_pred chhhHhhcCCCCChh--hHHHHHHHHHHH---HHHhCCc
Q 015710 87 PQALEDEYGGFLSPK--IVKDFGDYADLC---FKEFGDR 120 (402)
Q Consensus 87 P~~l~~~~gg~~~~~--~~~~f~~ya~~~---~~~~g~~ 120 (402)
|.+ ++|.+.|++ +.+.-.++++.| ++.+|..
T Consensus 96 ~~~---~~GSLt~pD~~vR~~AIe~~k~~idiA~eLGa~ 131 (378)
T TIGR02635 96 DDY---KFGSLTHPDKRIRRKAIDHLLECVDIAKKTGSK 131 (378)
T ss_pred ccc---CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 654 247887754 556666666665 4677764
No 167
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=28.63 E-value=1.4e+02 Score=32.40 Aligned_cols=23 Identities=17% Similarity=0.372 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHCCCeEEEEcc
Q 015710 60 VDFYNNLINELISNGLTPFVTLF 82 (402)
Q Consensus 60 ~~~y~~~i~~l~~~gi~p~vtL~ 82 (402)
++=+++||++|.++||++|+.+.
T Consensus 228 ~~efk~lV~~~H~~Gi~VilDvV 250 (605)
T TIGR02104 228 IRELKQMIQALHENGIRVIMDVV 250 (605)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEE
Confidence 45689999999999999999753
No 168
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=28.25 E-value=3.2e+02 Score=23.71 Aligned_cols=57 Identities=16% Similarity=0.209 Sum_probs=35.7
Q ss_pred hHHHHHHHHHcCCCceeeccc-cCcccccCCCCCCCChhHHHHHHHHHHHHHHCC-CeEEEEc
Q 015710 21 YKEDIALVKQVGFDSIRFSIS-WSRILPHGNISGGVNQQGVDFYNNLINELISNG-LTPFVTL 81 (402)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~-W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~g-i~p~vtL 81 (402)
-++.++.|+++|++.+.+|+. ++.-.-+.. ....+ .+.+.+.|+.+++.| +.+.+.+
T Consensus 99 ~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~-~~~~~---~~~~~~~i~~~~~~g~~~v~~~~ 157 (216)
T smart00729 99 TEELLEALKEAGVNRVSLGVQSGSDEVLKAI-NRGHT---VEDVLEAVEKLREAGPIKVSTDL 157 (216)
T ss_pred CHHHHHHHHHcCCCeEEEecccCCHHHHHHh-cCCCC---HHHHHHHHHHHHHhCCcceEEeE
Confidence 367789999999998888875 533211100 01112 366788888999999 5554433
No 169
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=27.64 E-value=1.7e+02 Score=27.91 Aligned_cols=81 Identities=15% Similarity=0.064 Sum_probs=53.1
Q ss_pred HHHHHHHHHcC----CCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHhhcCCC
Q 015710 22 KEDIALVKQVG----FDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGF 97 (402)
Q Consensus 22 ~eDi~l~~~lG----~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~ 97 (402)
.+|++++.+.| ++.+|+.++.|.+.-.... +.-..+.++-..+.+..+++.|++..+++ |. ++.
T Consensus 72 ~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~-~~~~~~~~~~~~~~i~~a~~~G~~v~~~~-----~~------~~~ 139 (268)
T cd07940 72 KKDIDAAAEALKPAKVDRIHTFIATSDIHLKYKL-KKTREEVLERAVEAVEYAKSHGLDVEFSA-----ED------ATR 139 (268)
T ss_pred HhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHcCCeEEEee-----ec------CCC
Confidence 78899999999 9999998876655322100 22123457778899999999999877544 31 222
Q ss_pred CChhhHHHHHHHHHHHHHHhC
Q 015710 98 LSPKIVKDFGDYADLCFKEFG 118 (402)
Q Consensus 98 ~~~~~~~~f~~ya~~~~~~~g 118 (402)
. ..+.+.+.++.+.+ +|
T Consensus 140 ~---~~~~~~~~~~~~~~-~G 156 (268)
T cd07940 140 T---DLDFLIEVVEAAIE-AG 156 (268)
T ss_pred C---CHHHHHHHHHHHHH-cC
Confidence 2 35666677777643 45
No 170
>PRK10426 alpha-glucosidase; Provisional
Probab=27.30 E-value=5.1e+02 Score=28.32 Aligned_cols=109 Identities=14% Similarity=0.182 Sum_probs=63.3
Q ss_pred chHHHHHHHHHcCCCceeecc-ccCcccccCC--C---CCCCChhHHHHHHHHHHHHHHCCCeEEEEccCC---CCchhh
Q 015710 20 RYKEDIALVKQVGFDSIRFSI-SWSRILPHGN--I---SGGVNQQGVDFYNNLINELISNGLTPFVTLFHW---DTPQAL 90 (402)
Q Consensus 20 ~~~eDi~l~~~lG~~~~R~si-~W~ri~P~~~--~---~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~---~~P~~l 90 (402)
...+-++.+++.|+..==+-| .|+....... . +-.+|.+-.--.+++|++|+++|++.++.+.=+ +.|..-
T Consensus 222 ~v~~v~~~~r~~~IP~d~i~lddw~~~~~~~~g~~~~~~~~~d~~~FPdp~~mi~~L~~~G~k~v~~i~P~v~~~~~~y~ 301 (635)
T PRK10426 222 VVQKKLDTMRNAGVKVNGIWAQDWSGIRMTSFGKRLMWNWKWDSERYPQLDSRIKQLNEEGIQFLGYINPYLASDGDLCE 301 (635)
T ss_pred HHHHHHHHHHHcCCCeeEEEEecccccccccccccccccceEChhhCCCHHHHHHHHHHCCCEEEEEEcCccCCCCHHHH
Confidence 345557888888876443322 5764422111 0 002243332334889999999999998876532 333321
Q ss_pred Hhh---------c------------CC---CCChhhHHHHHHHHHHHHHHhCCcceEE-EeecCC
Q 015710 91 EDE---------Y------------GG---FLSPKIVKDFGDYADLCFKEFGDRVKHW-ITLNEP 130 (402)
Q Consensus 91 ~~~---------~------------gg---~~~~~~~~~f~~ya~~~~~~~g~~v~~w-~t~NEp 130 (402)
+.. . ++ ++|++..+.|.+..+..+...| |+.| .=+||+
T Consensus 302 e~~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~~~~~~~~~~G--vdg~w~D~~E~ 364 (635)
T PRK10426 302 EAAEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKEVIKKNMIGLG--CSGWMADFGEY 364 (635)
T ss_pred HHHHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHHHHHHHHhhcC--CCEEeeeCCCC
Confidence 110 0 11 6789999988877665455554 6666 568994
No 171
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=27.30 E-value=3.8e+02 Score=27.07 Aligned_cols=73 Identities=14% Similarity=0.204 Sum_probs=53.0
Q ss_pred HHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHhhcCCCCChhhHHHHH
Q 015710 28 VKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSPKIVKDFG 107 (402)
Q Consensus 28 ~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~ 107 (402)
..+.|+..+|+. | |.+-. --+..+.+++.++++|+-.=+...|-.++.-+.++||+=+.+..++--.
T Consensus 97 a~~~G~~~iRIN---------P---GNig~-~~~~v~~vv~~ak~~~ipIRIGvN~GSL~~~~~~~yg~~t~eamveSAl 163 (360)
T PRK00366 97 AAEAGADALRIN---------P---GNIGK-RDERVREVVEAAKDYGIPIRIGVNAGSLEKDLLEKYGEPTPEALVESAL 163 (360)
T ss_pred HHHhCCCEEEEC---------C---CCCCc-hHHHHHHHHHHHHHCCCCEEEecCCccChHHHHHHcCCCCHHHHHHHHH
Confidence 347789999753 3 55521 0256899999999999999999999999999988876523344566666
Q ss_pred HHHHHH
Q 015710 108 DYADLC 113 (402)
Q Consensus 108 ~ya~~~ 113 (402)
++++.+
T Consensus 164 ~~~~~l 169 (360)
T PRK00366 164 RHAKIL 169 (360)
T ss_pred HHHHHH
Confidence 666553
No 172
>PTZ00445 p36-lilke protein; Provisional
Probab=27.26 E-value=1e+02 Score=28.94 Aligned_cols=51 Identities=18% Similarity=0.331 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHCCCeEEEEccCCCCc-hhhHhhcCCCCChh---------hHHHHHHHHHHHHH
Q 015710 61 DFYNNLINELISNGLTPFVTLFHWDTP-QALEDEYGGFLSPK---------IVKDFGDYADLCFK 115 (402)
Q Consensus 61 ~~y~~~i~~l~~~gi~p~vtL~H~~~P-~~l~~~~gg~~~~~---------~~~~f~~ya~~~~~ 115 (402)
+--+.+++.|++.||+.+++=+ |.- ...+ -|||.++. ..+.|......+-+
T Consensus 29 ~~~~~~v~~L~~~GIk~Va~D~--DnTlI~~H--sgG~~~~~~~~~~~~~~~tpefk~~~~~l~~ 89 (219)
T PTZ00445 29 ESADKFVDLLNECGIKVIASDF--DLTMITKH--SGGYIDPDNDDIRVLTSVTPDFKILGKRLKN 89 (219)
T ss_pred HHHHHHHHHHHHcCCeEEEecc--hhhhhhhh--cccccCCCcchhhhhccCCHHHHHHHHHHHH
Confidence 3458899999999999998643 332 1222 38999887 45556666555443
No 173
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=26.73 E-value=5.5e+02 Score=24.94 Aligned_cols=32 Identities=19% Similarity=0.245 Sum_probs=29.5
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCeEEEEccCC
Q 015710 53 GGVNQQGVDFYNNLINELISNGLTPFVTLFHW 84 (402)
Q Consensus 53 g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~ 84 (402)
+-++.+-+..++++++.++++|-..++=|.|-
T Consensus 69 ~~~~~~~~~~~~~~~~~vh~~g~~~~~Ql~h~ 100 (327)
T cd02803 69 GIYDDEQIPGLRKLTEAVHAHGAKIFAQLAHA 100 (327)
T ss_pred CcCCHHHHHHHHHHHHHHHhCCCHhhHHhhCC
Confidence 67888899999999999999999999999994
No 174
>PF11997 DUF3492: Domain of unknown function (DUF3492); InterPro: IPR022622 This domain is functionally uncharacterised and is found in bacteria, archaea and eukaryotes. It is typically between 259 to 282 amino acids in length. This region is found N-terminal PF00534 from PFAM. There are two conserved sequence motifs: GGVS and EHGIY.
Probab=26.67 E-value=62 Score=31.19 Aligned_cols=26 Identities=27% Similarity=0.477 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHcCCCCEEEeecCCCCCC
Q 015710 270 GIRELLLYLKKKYNPPPIYITENGVGDVN 298 (402)
Q Consensus 270 gl~~~L~~~~~rY~~ppI~ITENG~~~~~ 298 (402)
||.-++.+ .+++.| ++|||.|+=..+
T Consensus 185 gl~g~~~k--~~~g~P-~lLTEHGIY~RE 210 (268)
T PF11997_consen 185 GLLGALAK--YRYGRP-FLLTEHGIYTRE 210 (268)
T ss_pred HHHHHHHH--HHhCCC-EEEecCCccHHH
Confidence 56655543 367776 999999997654
No 175
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=26.26 E-value=1.2e+02 Score=28.75 Aligned_cols=62 Identities=10% Similarity=0.065 Sum_probs=39.6
Q ss_pred hhhchHHHHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEc
Q 015710 17 FYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (402)
Q Consensus 17 ~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 81 (402)
.-.++++-+++++++|.+.++++- .+..+... ..+.-...++.++++++.+.+.||+..+=.
T Consensus 92 ~~~~~~~~i~~a~~lG~~~v~~~~--~~~~~~~~-~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~ 153 (279)
T TIGR00542 92 GLEIMEKAIQLARDLGIRTIQLAG--YDVYYEEH-DEETRRRFREGLKEAVELAARAQVTLAVEI 153 (279)
T ss_pred HHHHHHHHHHHHHHhCCCEEEecC--cccccCcC-CHHHHHHHHHHHHHHHHHHHHcCCEEEEee
Confidence 344567778999999999998852 11111110 011112345777888899999999887754
No 176
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=26.18 E-value=1.4e+02 Score=28.63 Aligned_cols=48 Identities=19% Similarity=0.355 Sum_probs=32.9
Q ss_pred HHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEc
Q 015710 25 IALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (402)
Q Consensus 25 i~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 81 (402)
.++||++|++.+=++=|=.|.. +++. =+...+-+..++++||+|+++.
T Consensus 79 ~~mLkd~G~~~viiGHSERR~~--------f~Et-d~~v~~K~~~a~~~gl~pIvCi 126 (250)
T PRK00042 79 AEMLKDLGVKYVIIGHSERRQY--------FGET-DELVNKKVKAALKAGLTPILCV 126 (250)
T ss_pred HHHHHHCCCCEEEeCcccccCc--------cCcC-HHHHHHHHHHHHHCCCEEEEEc
Confidence 5889999999888886544432 2221 0223444555999999999999
No 177
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=26.10 E-value=3.2e+02 Score=30.70 Aligned_cols=103 Identities=18% Similarity=0.322 Sum_probs=64.0
Q ss_pred HHHHHHcCCC--ceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEcc---CCCCc-----------h
Q 015710 25 IALVKQVGFD--SIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF---HWDTP-----------Q 88 (402)
Q Consensus 25 i~l~~~lG~~--~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~---H~~~P-----------~ 88 (402)
++.+.++|+. ..=..|.|-.-..+ -.+|..+.-....+++.|.++|++.++.+. +-+.. .
T Consensus 317 v~~~~~agiPld~~~~DiDyMd~ykD----FTvd~~~fp~~~~fv~~Lh~~G~kyvliidP~is~~~~y~~y~~g~~~~v 392 (805)
T KOG1065|consen 317 VENYRAAGIPLDVIVIDIDYMDGYKD----FTVDKVWFPDLKDFVDDLHARGFKYVLIIDPFISTNSSYGPYDRGVAKDV 392 (805)
T ss_pred HHHHHHcCCCcceeeeehhhhhcccc----eeeccccCcchHHHHHHHHhCCCeEEEEeCCccccCccchhhhhhhhhce
Confidence 6778888887 44444444322211 345655555578999999999999999986 22222 0
Q ss_pred hhHh----------hcCC------CCChhhHHHHHHHHHHHHHHhCCcce---EEEeecCCCcccc
Q 015710 89 ALED----------EYGG------FLSPKIVKDFGDYADLCFKEFGDRVK---HWITLNEPETVGE 135 (402)
Q Consensus 89 ~l~~----------~~gg------~~~~~~~~~f~~ya~~~~~~~g~~v~---~w~t~NEp~~~~~ 135 (402)
|..+ -..| ++|+++++.+ ...+++|.+.|. +|+-.|||.-++.
T Consensus 393 ~I~~~~g~~~~lg~vwP~~~~fpDftnp~~~~Ww----~~~~~~fh~~vp~dg~wiDmnE~snf~~ 454 (805)
T KOG1065|consen 393 LIKNREGSPKMLGEVWPGSTAFPDFTNPAVVEWW----LDELKRFHDEVPFDGFWIDMNEPSNFPS 454 (805)
T ss_pred eeecccCchhhhcccCCCcccccccCCchHHHHH----HHHHHhhcccCCccceEEECCCcccCCC
Confidence 0110 0112 5666555544 345668888775 8999999986553
No 178
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=26.00 E-value=2.6e+02 Score=26.90 Aligned_cols=73 Identities=12% Similarity=0.016 Sum_probs=52.3
Q ss_pred cchhhhchHHHHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhH
Q 015710 14 ADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALE 91 (402)
Q Consensus 14 a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~ 91 (402)
+.+..+...+=.+.+|++|+..+|.+..=+|--|... .| +-. +.+..+-+.+.+.||..+.+.++-..+..+.
T Consensus 36 sie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~-~G-~g~---~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l~ 108 (266)
T PRK13398 36 AVESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSF-QG-LGE---EGLKILKEVGDKYNLPVVTEVMDTRDVEEVA 108 (266)
T ss_pred cCCCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCcc-CC-cHH---HHHHHHHHHHHHcCCCEEEeeCChhhHHHHH
Confidence 3456677777789999999999999976677666543 12 223 4566677778999999999988655554443
No 179
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=25.72 E-value=88 Score=29.30 Aligned_cols=61 Identities=23% Similarity=0.352 Sum_probs=44.6
Q ss_pred ccchhhhchHHHHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCCCCch
Q 015710 13 VADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQ 88 (402)
Q Consensus 13 ~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~ 88 (402)
+|.|..+. ++.+++++++|....-+-+-+..+.-.| .++|..|++.|...++.++-.|+|.
T Consensus 7 lAlD~~~~-~~~l~~~~~~~~~~~~ikvg~~~f~~~G--------------~~~i~~l~~~~~~i~~D~Kl~Di~~ 67 (230)
T PRK00230 7 VALDFPSK-EEALAFLDQLDPAVLFVKVGMELFTAGG--------------PQFVRELKQRGFKVFLDLKLHDIPN 67 (230)
T ss_pred EEcCCCCH-HHHHHHHHhcCCcccEEEEcHHHHHhcC--------------HHHHHHHHhcCCCEEEEeehhhccc
Confidence 46666655 7889999999976555555554444211 4678889888999999999889985
No 180
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=25.70 E-value=1.2e+02 Score=31.28 Aligned_cols=57 Identities=21% Similarity=0.287 Sum_probs=38.3
Q ss_pred HHHHHHHHcCCCceeec-c-----ccCcccccCCCCCCC--ChhHHHHHHHHHHHHHHCCCeEEEEc
Q 015710 23 EDIALVKQVGFDSIRFS-I-----SWSRILPHGNISGGV--NQQGVDFYNNLINELISNGLTPFVTL 81 (402)
Q Consensus 23 eDi~l~~~lG~~~~R~s-i-----~W~ri~P~~~~~g~~--n~~~~~~y~~~i~~l~~~gi~p~vtL 81 (402)
+-++.+++||++++=++ | ++..--.... -.+ ....++-.+++|+++.++||+.|+.+
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy--~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~ 97 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDY--TKVDPHFGTEEDFKELVEEAHKRGIKVILDL 97 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccch--hhcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 56889999999998655 2 1111111100 111 23346778999999999999999987
No 181
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=25.66 E-value=3.1e+02 Score=27.59 Aligned_cols=96 Identities=13% Similarity=0.100 Sum_probs=59.2
Q ss_pred hHHHHHHHHHcCCCceeeccccCcccccCC-CCCC-CChhHHHHHHHHHHHHHHCCCeE-EEEccCCCCchhhHhhcCCC
Q 015710 21 YKEDIALVKQVGFDSIRFSISWSRILPHGN-ISGG-VNQQGVDFYNNLINELISNGLTP-FVTLFHWDTPQALEDEYGGF 97 (402)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~-~~g~-~n~~~~~~y~~~i~~l~~~gi~p-~vtL~H~~~P~~l~~~~gg~ 97 (402)
-++.++.|+++|+|.+.+++ .-+-++-- .-|. .+ .+-..+.|+.+++.|+.. -++|- +++|.
T Consensus 102 ~~~~l~~l~~~G~nrislGv--QS~~~~~L~~l~R~~~---~~~~~~ai~~~~~~g~~~v~~Dli-~GlPg--------- 166 (370)
T PRK06294 102 SESYIRALALTGINRISIGV--QTFDDPLLKLLGRTHS---SSKAIDAVQECSEHGFSNLSIDLI-YGLPT--------- 166 (370)
T ss_pred CHHHHHHHHHCCCCEEEEcc--ccCCHHHHHHcCCCCC---HHHHHHHHHHHHHcCCCeEEEEee-cCCCC---------
Confidence 36779999999999555554 22222110 0011 22 244577899999999974 45553 45663
Q ss_pred CChhhHHHHHHHHHHHHHHhCCcceEEEeecCCCccc
Q 015710 98 LSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVG 134 (402)
Q Consensus 98 ~~~~~~~~f~~ya~~~~~~~g~~v~~w~t~NEp~~~~ 134 (402)
++.+.|.+=++.+.+.=-+.|..+...=||....
T Consensus 167 ---qt~~~~~~~l~~~~~l~~~~is~y~l~~~~gT~l 200 (370)
T PRK06294 167 ---QSLSDFIVDLHQAITLPITHISLYNLTIDPHTSF 200 (370)
T ss_pred ---CCHHHHHHHHHHHHccCCCeEEEeeeEecCCChH
Confidence 2355666666666553336788888888888643
No 182
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=25.64 E-value=44 Score=20.24 Aligned_cols=15 Identities=27% Similarity=0.534 Sum_probs=12.8
Q ss_pred HHHHHHHHHHCCCeE
Q 015710 63 YNNLINELISNGLTP 77 (402)
Q Consensus 63 y~~~i~~l~~~gi~p 77 (402)
-.++++.+++.||+|
T Consensus 20 a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 20 ALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHhCCCC
Confidence 478888999999988
No 183
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=25.06 E-value=2.1e+02 Score=28.74 Aligned_cols=96 Identities=19% Similarity=0.200 Sum_probs=55.0
Q ss_pred hHHHHHHHHHcCCCceeeccc-cC-cccccCCCCCCCChhHHHHHHHHHHHHHHCCCe-EEEEccCCCCchhhHhhcCCC
Q 015710 21 YKEDIALVKQVGFDSIRFSIS-WS-RILPHGNISGGVNQQGVDFYNNLINELISNGLT-PFVTLFHWDTPQALEDEYGGF 97 (402)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~-W~-ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~-p~vtL~H~~~P~~l~~~~gg~ 97 (402)
-++.+++|+++|++.+.+++. -+ ++.-.- ....+ .+-..+.++.+++.|+. +.++|- +++|.
T Consensus 107 ~~e~l~~l~~~G~~rvslGvQS~~~~~L~~l--~R~~s---~~~~~~a~~~l~~~g~~~v~~dli-~GlPg--------- 171 (375)
T PRK05628 107 SPEFFAALRAAGFTRVSLGMQSAAPHVLAVL--DRTHT---PGRAVAAAREARAAGFEHVNLDLI-YGTPG--------- 171 (375)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHHc--CCCCC---HHHHHHHHHHHHHcCCCcEEEEEe-ccCCC---------
Confidence 467799999999996666652 22 121111 01122 34567889999999998 555552 35553
Q ss_pred CChhhHHHHHHHHHHHHHHhC-CcceEEEeecCCCcccc
Q 015710 98 LSPKIVKDFGDYADLCFKEFG-DRVKHWITLNEPETVGE 135 (402)
Q Consensus 98 ~~~~~~~~f~~ya~~~~~~~g-~~v~~w~t~NEp~~~~~ 135 (402)
.+ .+.|.+=.+.+.+ ++ +.|..+...=||.....
T Consensus 172 qt---~~~~~~tl~~~~~-l~~~~i~~y~l~~~~gT~l~ 206 (375)
T PRK05628 172 ES---DDDWRASLDAALE-AGVDHVSAYALIVEDGTALA 206 (375)
T ss_pred CC---HHHHHHHHHHHHh-cCCCEEEeeeeecCCCChHH
Confidence 22 3444444444433 44 55666665557765443
No 184
>PRK14567 triosephosphate isomerase; Provisional
Probab=24.81 E-value=1.7e+02 Score=28.15 Aligned_cols=48 Identities=21% Similarity=0.310 Sum_probs=35.2
Q ss_pred HHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEc
Q 015710 25 IALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (402)
Q Consensus 25 i~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 81 (402)
..+||++|++.+=++-|=.|..= ++-| +...+-+..++++||+|++++
T Consensus 78 ~~mLkd~G~~yviiGHSERR~~f-----~Etd----~~v~~Kv~~al~~gl~pI~Ci 125 (253)
T PRK14567 78 ARMLEDIGCDYLLIGHSERRSLF-----AESD----EDVFKKLNKIIDTTITPVVCI 125 (253)
T ss_pred HHHHHHcCCCEEEECcccccCcc-----CCCH----HHHHHHHHHHHHCCCEEEEEc
Confidence 47899999998888865444321 2222 345778889999999999999
No 185
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=24.57 E-value=1.2e+02 Score=31.50 Aligned_cols=61 Identities=18% Similarity=0.293 Sum_probs=37.3
Q ss_pred hHHHHHHHHHcCCCceeeccccCcccccC--CCCCCCChhHHHHHHHHHHHHHHCCCe-EEEEccCCCCc
Q 015710 21 YKEDIALVKQVGFDSIRFSISWSRILPHG--NISGGVNQQGVDFYNNLINELISNGLT-PFVTLFHWDTP 87 (402)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~--~~~g~~n~~~~~~y~~~i~~l~~~gi~-p~vtL~H~~~P 87 (402)
-++.+++|+++|++.+-+++ ...-++- ......+ .+.+.+.++.|++.|++ +-++| -+++|
T Consensus 150 ~~e~l~~lk~~G~~risiGv--qS~~~~~l~~l~r~~~---~~~~~~ai~~l~~~G~~~v~~dl-i~GlP 213 (455)
T TIGR00538 150 TKDVIDALRDEGFNRLSFGV--QDFNKEVQQAVNRIQP---EEMIFELMNHAREAGFTSINIDL-IYGLP 213 (455)
T ss_pred CHHHHHHHHHcCCCEEEEcC--CCCCHHHHHHhCCCCC---HHHHHHHHHHHHhcCCCcEEEeE-EeeCC
Confidence 36789999999999666555 2222210 0001223 35578899999999997 33444 24555
No 186
>PLN02389 biotin synthase
Probab=24.50 E-value=2e+02 Score=29.26 Aligned_cols=57 Identities=18% Similarity=0.138 Sum_probs=41.0
Q ss_pred chHHHHHHHHHcCCCceeeccccCc-ccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEc
Q 015710 20 RYKEDIALVKQVGFDSIRFSISWSR-ILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (402)
Q Consensus 20 ~~~eDi~l~~~lG~~~~R~si~W~r-i~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 81 (402)
.-+|.++.||+.|++.|-.+++=++ +.|.-. ..- .++..-+.++.+++.||++..++
T Consensus 176 l~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~--~~~---s~e~rl~ti~~a~~~Gi~v~sg~ 233 (379)
T PLN02389 176 LEKEQAAQLKEAGLTAYNHNLDTSREYYPNVI--TTR---SYDDRLETLEAVREAGISVCSGG 233 (379)
T ss_pred CCHHHHHHHHHcCCCEEEeeecCChHHhCCcC--CCC---CHHHHHHHHHHHHHcCCeEeEEE
Confidence 4578899999999999988876222 444321 111 34567899999999999886664
No 187
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=24.32 E-value=1.6e+02 Score=29.47 Aligned_cols=68 Identities=15% Similarity=0.182 Sum_probs=49.5
Q ss_pred HHHHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHhhcCCCCChh
Q 015710 22 KEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSPK 101 (402)
Q Consensus 22 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~ 101 (402)
.+|++.+.+.|++.+|+...++.. +--.+.|+.+++.|++..+++..- + ..
T Consensus 91 ~~dl~~a~~~gvd~iri~~~~~e~---------------~~~~~~i~~ak~~G~~v~~~l~~a-----------~---~~ 141 (337)
T PRK08195 91 VDDLKMAYDAGVRVVRVATHCTEA---------------DVSEQHIGLARELGMDTVGFLMMS-----------H---MA 141 (337)
T ss_pred HHHHHHHHHcCCCEEEEEEecchH---------------HHHHHHHHHHHHCCCeEEEEEEec-----------c---CC
Confidence 589999999999999998755443 124789999999999999988531 1 12
Q ss_pred hHHHHHHHHHHHHHHhCC
Q 015710 102 IVKDFGDYADLCFKEFGD 119 (402)
Q Consensus 102 ~~~~f~~ya~~~~~~~g~ 119 (402)
.++.+++.++.+. .+|-
T Consensus 142 ~~e~l~~~a~~~~-~~Ga 158 (337)
T PRK08195 142 PPEKLAEQAKLME-SYGA 158 (337)
T ss_pred CHHHHHHHHHHHH-hCCC
Confidence 3566677777754 4664
No 188
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=24.20 E-value=1.6e+02 Score=28.03 Aligned_cols=67 Identities=16% Similarity=0.258 Sum_probs=48.3
Q ss_pred HHHHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHhhcCCCCChh
Q 015710 22 KEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSPK 101 (402)
Q Consensus 22 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~ 101 (402)
.+|++.+++.|++.+|+.++.+.+. -..+.++.++++|+++.+++-. .+..+
T Consensus 88 ~~~i~~a~~~g~~~iri~~~~s~~~---------------~~~~~i~~ak~~G~~v~~~~~~-----------~~~~~-- 139 (263)
T cd07943 88 VDDLKMAADLGVDVVRVATHCTEAD---------------VSEQHIGAARKLGMDVVGFLMM-----------SHMAS-- 139 (263)
T ss_pred HHHHHHHHHcCCCEEEEEechhhHH---------------HHHHHHHHHHHCCCeEEEEEEe-----------ccCCC--
Confidence 6899999999999999988666431 2477899999999999998842 12233
Q ss_pred hHHHHHHHHHHHHHHhC
Q 015710 102 IVKDFGDYADLCFKEFG 118 (402)
Q Consensus 102 ~~~~f~~ya~~~~~~~g 118 (402)
++.+.+.++.+. ..|
T Consensus 140 -~~~~~~~~~~~~-~~G 154 (263)
T cd07943 140 -PEELAEQAKLME-SYG 154 (263)
T ss_pred -HHHHHHHHHHHH-HcC
Confidence 355666676653 344
No 189
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=24.07 E-value=4.4e+02 Score=24.88 Aligned_cols=54 Identities=20% Similarity=0.209 Sum_probs=37.9
Q ss_pred hchHHHHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEE
Q 015710 19 FRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPF 78 (402)
Q Consensus 19 ~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~ 78 (402)
.-|.|-+++++++|++.+=+++.-....|.. -.++. .....+-+.+.++||++.
T Consensus 16 ~~~~e~l~~~~~~G~~~VEl~~~~~~~~~~~---~~~~~---~~~~~~~~~l~~~gl~i~ 69 (279)
T TIGR00542 16 ECWLERLQLAKTCGFDFVEMSVDETDDRLSR---LDWSR---EQRLALVNAIIETGVRIP 69 (279)
T ss_pred CCHHHHHHHHHHcCCCEEEEecCCccchhhc---cCCCH---HHHHHHHHHHHHcCCCce
Confidence 3578889999999999998876543322222 11222 345788889999999875
No 190
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=24.00 E-value=3.8e+02 Score=25.29 Aligned_cols=55 Identities=13% Similarity=0.194 Sum_probs=38.2
Q ss_pred hchHHHHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHC-CCeEEEE
Q 015710 19 FRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISN-GLTPFVT 80 (402)
Q Consensus 19 ~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~-gi~p~vt 80 (402)
..+++-+++++++|++.+=+.+......+.. ..+. +..+++.+.+.++ |+...+.
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~~----~~~~---~~~~~l~~~~~~~~~~~i~~~ 65 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLSR----PLKK---ERAEKFKAIAEEGPSICLSVH 65 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccCCC----CCCH---HHHHHHHHHHHHcCCCcEEEE
Confidence 6779999999999999998888665444332 1233 3457777777777 6665543
No 191
>PRK01060 endonuclease IV; Provisional
Probab=23.87 E-value=3.2e+02 Score=25.76 Aligned_cols=50 Identities=8% Similarity=0.118 Sum_probs=36.0
Q ss_pred hHHHHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeE
Q 015710 21 YKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTP 77 (402)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p 77 (402)
+++-++.++++|++.+=+.+.-++.... +..+.+ ..+++-+.+.++||+.
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~p~~~~~----~~~~~~---~~~~lk~~~~~~gl~~ 63 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGNPQQWKR----KPLEEL---NIEAFKAACEKYGISP 63 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCcC----CCCCHH---HHHHHHHHHHHcCCCC
Confidence 6788999999999999988765554322 234443 3456667788999985
No 192
>PLN02429 triosephosphate isomerase
Probab=23.52 E-value=1.6e+02 Score=29.21 Aligned_cols=48 Identities=19% Similarity=0.272 Sum_probs=32.9
Q ss_pred HHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEc
Q 015710 25 IALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (402)
Q Consensus 25 i~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 81 (402)
.++|+++|++.+=++=+=.|..= ++-| +...+-+..++++||+||+++
T Consensus 140 a~mLkd~Gv~~ViiGHSERR~~f-----~Etd----~~V~~Kv~~al~~GL~pIvCI 187 (315)
T PLN02429 140 VEQLKDLGCKWVILGHSERRHVI-----GEKD----EFIGKKAAYALSEGLGVIACI 187 (315)
T ss_pred HHHHHHcCCCEEEeCccccCCCC-----CcCH----HHHHHHHHHHHHCcCEEEEEc
Confidence 47899999988888765444421 2222 233444555999999999999
No 193
>PRK05660 HemN family oxidoreductase; Provisional
Probab=22.67 E-value=3.6e+02 Score=27.16 Aligned_cols=94 Identities=15% Similarity=0.107 Sum_probs=57.2
Q ss_pred hHHHHHHHHHcCCCceeeccc-cC-cccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEE-EEccCCCCchhhHhhcCCC
Q 015710 21 YKEDIALVKQVGFDSIRFSIS-WS-RILPHGNISGGVNQQGVDFYNNLINELISNGLTPF-VTLFHWDTPQALEDEYGGF 97 (402)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~-W~-ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~-vtL~H~~~P~~l~~~~gg~ 97 (402)
-++.++.|+++|++.+-+|+. -+ .+.-.- ....+ .+-..+.|+.+++.|+.++ ++| =+++|.
T Consensus 106 ~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l--~r~~~---~~~~~~ai~~~~~~G~~~v~~dl-i~Glpg--------- 170 (378)
T PRK05660 106 EADRFVGYQRAGVNRISIGVQSFSEEKLKRL--GRIHG---PDEAKRAAKLAQGLGLRSFNLDL-MHGLPD--------- 170 (378)
T ss_pred CHHHHHHHHHcCCCEEEeccCcCCHHHHHHh--CCCCC---HHHHHHHHHHHHHcCCCeEEEEe-ecCCCC---------
Confidence 358899999999996666652 22 122111 01122 3445778999999999875 555 346663
Q ss_pred CChhhHHHHHHHHHHHHHHhCCcceEEEeecCCCc
Q 015710 98 LSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPET 132 (402)
Q Consensus 98 ~~~~~~~~f~~ya~~~~~~~g~~v~~w~t~NEp~~ 132 (402)
. +.+.+.+-.+.+.+.=-+++..+...=||..
T Consensus 171 q---t~~~~~~~l~~~~~l~p~~is~y~l~~~~gT 202 (378)
T PRK05660 171 Q---SLEEALDDLRQAIALNPPHLSWYQLTIEPNT 202 (378)
T ss_pred C---CHHHHHHHHHHHHhcCCCeEEeeccEeccCC
Confidence 2 2445555555555533467887777777764
No 194
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=22.65 E-value=3.2e+02 Score=29.64 Aligned_cols=48 Identities=13% Similarity=0.021 Sum_probs=33.1
Q ss_pred hHHHHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccC
Q 015710 21 YKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFH 83 (402)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H 83 (402)
-++|++++++.|++.+|+..+-+.+. -....|+..+++|....+++..
T Consensus 98 v~~~v~~A~~~Gvd~irif~~lnd~~---------------n~~~~i~~ak~~G~~v~~~i~~ 145 (592)
T PRK09282 98 VEKFVEKAAENGIDIFRIFDALNDVR---------------NMEVAIKAAKKAGAHVQGTISY 145 (592)
T ss_pred hHHHHHHHHHCCCCEEEEEEecChHH---------------HHHHHHHHHHHcCCEEEEEEEe
Confidence 35568899999999999997765541 1245556666677766666643
No 195
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=22.31 E-value=2.3e+02 Score=26.21 Aligned_cols=77 Identities=14% Similarity=0.113 Sum_probs=52.4
Q ss_pred HHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHhhcCCCCChhhHH
Q 015710 25 IALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSPKIVK 104 (402)
Q Consensus 25 i~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~ 104 (402)
++.+++.|++.+|+.++=|........ +.--.+.++...++++.+++.|++..+++-+.+ +...+
T Consensus 73 ~~~~~~~g~~~i~i~~~~s~~~~~~~~-~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~--------------~~~~~ 137 (237)
T PF00682_consen 73 VEAAKEAGIDIIRIFISVSDLHIRKNL-NKSREEALERIEEAVKYAKELGYEVAFGCEDAS--------------RTDPE 137 (237)
T ss_dssp HHHHHHTTSSEEEEEEETSHHHHHHHT-CSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTG--------------GSSHH
T ss_pred HHhhHhccCCEEEecCcccHHHHHHhh-cCCHHHHHHHHHHHHHHHHhcCCceEeCccccc--------------cccHH
Confidence 344567999999999877765433210 333345678889999999999999977773311 22256
Q ss_pred HHHHHHHHHHHH
Q 015710 105 DFGDYADLCFKE 116 (402)
Q Consensus 105 ~f~~ya~~~~~~ 116 (402)
.+.++++.+.+.
T Consensus 138 ~~~~~~~~~~~~ 149 (237)
T PF00682_consen 138 ELLELAEALAEA 149 (237)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 777777777655
No 196
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=22.27 E-value=3.3e+02 Score=27.74 Aligned_cols=53 Identities=15% Similarity=0.158 Sum_probs=31.8
Q ss_pred HHHHHHcCCCceeeccccCc---ccccCCCCCCCChh----HHHHHHHHHHHHHHCCCeEEE
Q 015710 25 IALVKQVGFDSIRFSISWSR---ILPHGNISGGVNQQ----GVDFYNNLINELISNGLTPFV 79 (402)
Q Consensus 25 i~l~~~lG~~~~R~si~W~r---i~P~~~~~g~~n~~----~~~~y~~~i~~l~~~gi~p~v 79 (402)
++++|++|++.+=+--.=+. +.|+.. ..+|.. .-+-..++.++|+++||+.-+
T Consensus 87 a~~~k~AGakY~vlTaKHHDGF~lw~S~~--t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~ 146 (384)
T smart00812 87 ADLFKKAGAKYVVLTAKHHDGFCLWDSKY--SNWNAVDTGPKRDLVGELADAVRKRGLKFGL 146 (384)
T ss_pred HHHHHHcCCCeEEeeeeecCCccccCCCC--CCCcccCCCCCcchHHHHHHHHHHcCCeEEE
Confidence 69999999996643211000 112221 111110 125679999999999999987
No 197
>PLN03153 hypothetical protein; Provisional
Probab=21.87 E-value=89 Score=33.14 Aligned_cols=69 Identities=22% Similarity=0.270 Sum_probs=39.7
Q ss_pred HHHHCC-CeEEEEccCCCCchhhHhhcCCCCChhhHHHHHHHH----HHHHHHh--CCcceEEEeecCCCcccccccccC
Q 015710 69 ELISNG-LTPFVTLFHWDTPQALEDEYGGFLSPKIVKDFGDYA----DLCFKEF--GDRVKHWITLNEPETVGECGYAKG 141 (402)
Q Consensus 69 ~l~~~g-i~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya----~~~~~~~--g~~v~~w~t~NEp~~~~~~gy~~g 141 (402)
.+.+.| +.|+|+||||+.=.-+ +.+-...+.++.|..-| ..++++. +|+..-|..- .-.||..-
T Consensus 326 G~les~p~~P~vSlHH~~~~~p~---fP~~~~~~~~~~l~~a~~~d~~~~lq~siCyd~~~~w~fs------vSwGysV~ 396 (537)
T PLN03153 326 GLLSSHPIAPFVSIHHVEAVDPF---YPGLSSLDSLKLFTRAMKVDPRSFLQRSICYDHTHHLTFS------ISLGYVVQ 396 (537)
T ss_pred hHhhcCCCCCceeeeeccccccc---cCCcchHHHHHHHHHHhhcCchhHHHHHHhhhcccceeEE------EeccEEEE
Confidence 445555 9999999999971111 12223445667766544 2234444 5666666654 55677765
Q ss_pred ccCCC
Q 015710 142 TKAPG 146 (402)
Q Consensus 142 ~~~Pg 146 (402)
.|+-+
T Consensus 397 ~y~~~ 401 (537)
T PLN03153 397 VFPSI 401 (537)
T ss_pred EecCC
Confidence 55433
No 198
>PHA02769 hypothetical protein; Provisional
Probab=21.84 E-value=1.4e+02 Score=25.04 Aligned_cols=34 Identities=32% Similarity=0.406 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHCCCeEEEEccCCCCchhhHhh
Q 015710 60 VDFYNNLINELISNGLTPFVTLFHWDTPQALEDE 93 (402)
Q Consensus 60 ~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~ 93 (402)
+.|...+-+.++.-|+++++||--=|....|..+
T Consensus 98 vnfl~~l~~k~~~dg~evlwtlgfpdhsnaly~k 131 (154)
T PHA02769 98 VNFLNDLAEKLKKDGFEVLWTLGFPDHSNALYKK 131 (154)
T ss_pred HHHHHHHHHHHhcCCeEEEEEecCCCcchhHHhh
Confidence 5677888888999999999999544455555544
No 199
>PF06777 DUF1227: Protein of unknown function (DUF1227); InterPro: IPR010643 This domain represents a conserved region within a number of eukaryotic DNA repair helicases.; GO: 0005634 nucleus
Probab=21.45 E-value=1.6e+02 Score=25.83 Aligned_cols=67 Identities=16% Similarity=0.191 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHCCCeEE--EEccCCCCchhhHhhc-CCCCChhhHHHHHHHHHHHHHHhCCcceEEEeecC
Q 015710 61 DFYNNLINELISNGLTPF--VTLFHWDTPQALEDEY-GGFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNE 129 (402)
Q Consensus 61 ~~y~~~i~~l~~~gi~p~--vtL~H~~~P~~l~~~~-gg~~~~~~~~~f~~ya~~~~~~~g~~v~~w~t~NE 129 (402)
+=|+++++.|+..++..- ..+.+=.+|..+-.+. .| |=...++|..|-+.+++.++.+++--.+..|
T Consensus 16 ~EY~rLV~GL~~~~~~~~~d~~~~npvLp~dil~eaVPG--nIR~AeHFv~flkR~veylk~rlrv~~v~~e 85 (146)
T PF06777_consen 16 DEYDRLVEGLREAEIARETDEILANPVLPDDILKEAVPG--NIRRAEHFVAFLKRFVEYLKTRLRVQHVISE 85 (146)
T ss_pred HHHHHHHHHHHHhccccccchhhcCCCCchhhhhhcCCc--hHHhHHHHHHHHHHHHHHHHHHhhhcceeec
Confidence 459999999999986542 1233445566554321 11 2234789999999999999998877777777
No 200
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=21.38 E-value=3.4e+02 Score=27.01 Aligned_cols=91 Identities=20% Similarity=0.249 Sum_probs=54.5
Q ss_pred HHHHHHHHHcCCCceeecc-ccC-cccccCCCCCC-CChhHHHHHHHHHHHHHHCCCeEE-EEccCCCCchhhHhhcCCC
Q 015710 22 KEDIALVKQVGFDSIRFSI-SWS-RILPHGNISGG-VNQQGVDFYNNLINELISNGLTPF-VTLFHWDTPQALEDEYGGF 97 (402)
Q Consensus 22 ~eDi~l~~~lG~~~~R~si-~W~-ri~P~~~~~g~-~n~~~~~~y~~~i~~l~~~gi~p~-vtL~H~~~P~~l~~~~gg~ 97 (402)
++.+++|+++|+|.+-+++ +-+ .+...- |. .+ .+-..+.|+.+++.|+..+ ++|- +++|.
T Consensus 98 ~e~l~~l~~~GvnRiSiGvQS~~~~~L~~l---gR~~~---~~~~~~ai~~lr~~g~~~v~iDli-~GlPg--------- 161 (350)
T PRK08446 98 KAWLKGMKNLGVNRISFGVQSFNEDKLKFL---GRIHS---QKQIIKAIENAKKAGFENISIDLI-YDTPL--------- 161 (350)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHc---CCCCC---HHHHHHHHHHHHHcCCCEEEEEee-cCCCC---------
Confidence 6789999999999766666 332 222111 22 22 3456889999999999855 5553 46663
Q ss_pred CChhhHHHHHHHHHHHHHHhC-CcceEEEeecCCCc
Q 015710 98 LSPKIVKDFGDYADLCFKEFG-DRVKHWITLNEPET 132 (402)
Q Consensus 98 ~~~~~~~~f~~ya~~~~~~~g-~~v~~w~t~NEp~~ 132 (402)
.+ .+.|.+-.+.+.+ ++ +.|..+...=||..
T Consensus 162 qt---~~~~~~~l~~~~~-l~~~~is~y~L~~~~gT 193 (350)
T PRK08446 162 DN---KKLLKEELKLAKE-LPINHLSAYSLTIEENT 193 (350)
T ss_pred CC---HHHHHHHHHHHHh-cCCCEEEeccceecCCC
Confidence 22 4445555555443 43 45655555555554
No 201
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=21.28 E-value=1.5e+02 Score=28.87 Aligned_cols=67 Identities=16% Similarity=0.381 Sum_probs=44.8
Q ss_pred HHHHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHhhcCCCCChh
Q 015710 22 KEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSPK 101 (402)
Q Consensus 22 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~~ 101 (402)
++=+++++++|++.+.+.+- +.-+++.+++|+++++.+.++.| ||.+|--..|.-++.-|.-..++|
T Consensus 109 ~~~f~~~~~~Gv~GvKidF~-----------~~d~Q~~v~~y~~i~~~AA~~~L--mvnfHg~~kPtG~~RTyPN~mT~E 175 (273)
T PF10566_consen 109 DEAFKLYAKWGVKGVKIDFM-----------DRDDQEMVNWYEDILEDAAEYKL--MVNFHGATKPTGLRRTYPNLMTRE 175 (273)
T ss_dssp HHHHHHHHHCTEEEEEEE-------------SSTSHHHHHHHHHHHHHHHHTT---EEEETTS---TTHHHCSTTEEEE-
T ss_pred HHHHHHHHHcCCCEEeeCcC-----------CCCCHHHHHHHHHHHHHHHHcCc--EEEecCCcCCCcccccCccHHHHH
Confidence 55689999999999999852 22467889999999999999986 567765556665554433333333
No 202
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=21.14 E-value=3.3e+02 Score=25.48 Aligned_cols=65 Identities=18% Similarity=0.273 Sum_probs=38.4
Q ss_pred chHHHHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEE-ccCCCCc
Q 015710 20 RYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVT-LFHWDTP 87 (402)
Q Consensus 20 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vt-L~H~~~P 87 (402)
..++=+++++++|.+.+++...+ . |.+....+.-....+..+++.+.+.+.||+..+= +.|++.|
T Consensus 86 ~~~~~i~~a~~lga~~i~~~~g~--~-~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~n~~~~~ 151 (258)
T PRK09997 86 GVAAAIRYARALGNKKINCLVGK--T-PAGFSSEQIHATLVENLRYAANMLMKEDILLLIEPINHFDIP 151 (258)
T ss_pred HHHHHHHHHHHhCCCEEEECCCC--C-CCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCcCCC
Confidence 35666899999999998864322 2 2210001111223455677777778999997774 3465544
No 203
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=21.01 E-value=1.6e+02 Score=30.65 Aligned_cols=79 Identities=15% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCceeeccccCcccccCCCCCCCCh-hHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHhhcCCCCCh
Q 015710 22 KEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQ-QGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSP 100 (402)
Q Consensus 22 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~-~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~ 100 (402)
++.+++|+++|++ |+||.-.-.-|+-- ..++. ...+...+.|+.+++.|++.+-.-.=+++|. .+.
T Consensus 152 ~e~l~~L~~~G~~--rvsiGvQS~~~~vl--~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dli~GlPg---------qt~ 218 (453)
T PRK13347 152 AEMLQALAALGFN--RASFGVQDFDPQVQ--KAINRIQPEEMVARAVELLRAAGFESINFDLIYGLPH---------QTV 218 (453)
T ss_pred HHHHHHHHHcCCC--EEEECCCCCCHHHH--HHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEEeCCC---------CCH
Q ss_pred hhHHHHHHHHHHH
Q 015710 101 KIVKDFGDYADLC 113 (402)
Q Consensus 101 ~~~~~f~~ya~~~ 113 (402)
+....-.+++..+
T Consensus 219 e~~~~tl~~~~~l 231 (453)
T PRK13347 219 ESFRETLDKVIAL 231 (453)
T ss_pred HHHHHHHHHHHhc
No 204
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=20.99 E-value=1.5e+02 Score=26.98 Aligned_cols=19 Identities=16% Similarity=0.350 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHhCCc
Q 015710 102 IVKDFGDYADLCFKEFGDR 120 (402)
Q Consensus 102 ~~~~f~~ya~~~~~~~g~~ 120 (402)
.+..|.++++.++-++.|.
T Consensus 138 ~~k~~lk~~E~~avk~ad~ 156 (185)
T PF09314_consen 138 PAKKYLKFSEKLAVKYADR 156 (185)
T ss_pred HHHHHHHHHHHHHHHhCCE
Confidence 4789999999999999986
No 205
>PLN02808 alpha-galactosidase
Probab=20.83 E-value=2.4e+02 Score=28.83 Aligned_cols=60 Identities=17% Similarity=0.315 Sum_probs=46.2
Q ss_pred hhhhchHHHHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCCCC
Q 015710 16 NFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDT 86 (402)
Q Consensus 16 d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~ 86 (402)
..+..++.|.+..++-|++.+.+.-.-. . +. ..-+.|..+-++|.+-|-..+..|+.|..
T Consensus 130 Gs~~~e~~DA~~fA~WGvDylK~D~C~~----~----~~---~~~~~y~~m~~AL~~tGRpi~~slc~wg~ 189 (386)
T PLN02808 130 GSLGHEEQDAKTFASWGIDYLKYDNCEN----T----GT---SPQERYPKMSKALLNSGRPIFFSLCEWGQ 189 (386)
T ss_pred cchHHHHHHHHHHHHhCCCEEeecCcCC----C----Cc---cHHHHHHHHHHHHHHhCCCeEEEecCCCC
Confidence 4578899999999999999999875421 1 11 12357999999999999766778998764
No 206
>cd08576 GDPD_like_SMaseD_PLD Glycerophosphodiester phosphodiesterase-like domain of spider venom sphingomyelinases D, bacterial phospholipase D, and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase-like domain (GDPD-like) present in sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.4) from spider venom, the Corynebacterium pseudotuberculosis Phospholipase D (PLD)-like protein from pathogenic bacteria, and the Ajellomyces capsulatus H143 PLD-like protein from ascomycetes. Spider SMases D and bacterial PLD proteins catalyze the Mg2+-dependent hydrolysis of sphingomyelin producing choline and ceramide 1-phosphate (C1P), which possess a number of biological functions, such as regulating cell proliferation and apoptosis, participating in inflammatory responses, and playing a key role in phagocytosis. In the presence of Mg2+, SMases D can function as lysophospholipase D and hydrolyze lysophosphatidylcholine (LPC) to choline
Probab=20.83 E-value=7.7e+02 Score=23.83 Aligned_cols=110 Identities=9% Similarity=0.120 Sum_probs=70.5
Q ss_pred hhhchHHHHHHHHHcCCCceeeccc-cCcccccCCC----CCCC-ChhHHHHHHHHHHHHHHC---CCeEEEEccCCCCc
Q 015710 17 FYFRYKEDIALVKQVGFDSIRFSIS-WSRILPHGNI----SGGV-NQQGVDFYNNLINELISN---GLTPFVTLFHWDTP 87 (402)
Q Consensus 17 ~y~~~~eDi~l~~~lG~~~~R~si~-W~ri~P~~~~----~g~~-n~~~~~~y~~~i~~l~~~---gi~p~vtL~H~~~P 87 (402)
|-=.=.+.|+-.-++|.|++=+.|. |+.=.|.-+. -.-+ +....+..+.+++.+++. |-+.-++|.-+|+
T Consensus 5 HmVn~~~~v~~~l~~GANaiE~Dv~f~~~~~~~~~~Hg~pcdc~r~c~~~~~f~~~l~~~r~~ttpg~~~~l~lv~lDl- 83 (265)
T cd08576 5 HMVNDLEGVDDALDHGANAIEIDVTFWSNGTGWWADHDVPCDCFRGCTAREMFDEILDYRRNGTTPGFRENLIFVWLDL- 83 (265)
T ss_pred hhhccHHHHHHHHHcCCCceeEEEEEccCCcEEEeeCCCccccccCCcHHHHHHHHHHHHHhcCCCCccceeEEEEEEc-
Confidence 3333456788888999999999985 4322332110 0112 334456677777777654 2222334432344
Q ss_pred hhhHhhcCCCCChhhHHHHHHHHHHHHHHhCCc---ceEEEeecCCCc
Q 015710 88 QALEDEYGGFLSPKIVKDFGDYADLCFKEFGDR---VKHWITLNEPET 132 (402)
Q Consensus 88 ~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~g~~---v~~w~t~NEp~~ 132 (402)
+.+++......+...+.|+.+.++|+.. +..++.+..|.+
T Consensus 84 -----K~~~~~~~~~~~ag~~la~~ll~~~w~~~~~~ra~~~~s~~~~ 126 (265)
T cd08576 84 -----KNPDLCGECSINAGRDLARKLLEPYWNGGSGARALYGFSIPSI 126 (265)
T ss_pred -----CCCCcCHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEeccc
Confidence 3356667788999999999999999955 788888887763
No 207
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=20.78 E-value=6.3e+02 Score=23.62 Aligned_cols=52 Identities=6% Similarity=0.029 Sum_probs=34.2
Q ss_pred chHHHHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEE
Q 015710 20 RYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFV 79 (402)
Q Consensus 20 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~v 79 (402)
-+++.+++++++|++.+=+........+. .... ..-+++-+.+.++||++..
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~~~~~~~~-----~~~~---~~~~~l~~~~~~~gl~v~s 65 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGGRPHAFAP-----DLKA---GGIKQIKALAQTYQMPIIG 65 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCcccccc-----ccCc---hHHHHHHHHHHHcCCeEEE
Confidence 47899999999999998874332222111 1122 2246677788899998753
No 208
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=20.29 E-value=2.2e+02 Score=27.81 Aligned_cols=72 Identities=15% Similarity=0.155 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHCCCe-E-EE---------------EccCCCCchhhHhhcCCCCCh-h-hHHHHHHHHHHHHHHhCC--
Q 015710 61 DFYNNLINELISNGLT-P-FV---------------TLFHWDTPQALEDEYGGFLSP-K-IVKDFGDYADLCFKEFGD-- 119 (402)
Q Consensus 61 ~~y~~~i~~l~~~gi~-p-~v---------------tL~H~~~P~~l~~~~gg~~~~-~-~~~~f~~ya~~~~~~~g~-- 119 (402)
+.|.++++.+++.||+ | ++ .+++-.+|.|+.++....... + ..+.=.+||...++.+-+
T Consensus 189 ~~~~~f~~~~~~~Gi~vPIi~GI~pi~s~~~~~~~~~~~Gv~vP~~l~~~l~~~~d~~~~~~~~Gi~~a~e~i~~L~~~g 268 (296)
T PRK09432 189 ESYLRFRDRCVSAGIDVEIVPGILPVSNFKQLKKFADMTNVRIPAWMAKMFDGLDDDAETRKLVGASIAMDMVKILSREG 268 (296)
T ss_pred HHHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHHccCCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 4577899999999855 2 22 235678899998876665432 2 222333455555544332
Q ss_pred --cceEEEeecCCCcc
Q 015710 120 --RVKHWITLNEPETV 133 (402)
Q Consensus 120 --~v~~w~t~NEp~~~ 133 (402)
.|.++ |+|-+...
T Consensus 269 v~GvH~y-t~n~~~~~ 283 (296)
T PRK09432 269 VKDFHFY-TLNRAELT 283 (296)
T ss_pred CCEEEEe-cCCChHHH
Confidence 34444 57776643
No 209
>PF14417 MEDS: MEDS: MEthanogen/methylotroph, DcmR Sensory domain
Probab=20.28 E-value=2.3e+02 Score=25.45 Aligned_cols=59 Identities=19% Similarity=0.431 Sum_probs=46.4
Q ss_pred hhhchHHHHHHHHHcCCCceeec--cccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCCCC
Q 015710 17 FYFRYKEDIALVKQVGFDSIRFS--ISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDT 86 (402)
Q Consensus 17 ~y~~~~eDi~l~~~lG~~~~R~s--i~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~ 86 (402)
....|.+-++...+.|.+.+|+. ..|..- . ..+.+..|+..+|.+.... |++.||.+|.
T Consensus 103 ~i~~~~~~~~~a~~~G~~~lRv~ge~~w~~~-------~--~~~~l~~yE~~ln~~~~~~--~~~~lC~Yd~ 163 (191)
T PF14417_consen 103 MIAFWRAALEQALAEGYRGLRVIGEMTWALR-------S--GWEELLRYEALLNRLFAEH--PFTALCAYDR 163 (191)
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEEechhhcc-------c--cHHHHHHHHHHHHHHhcCC--CEEEEeccch
Confidence 34456666888888999999998 467421 2 6678899999999999888 8888887765
No 210
>PRK14565 triosephosphate isomerase; Provisional
Probab=20.23 E-value=2.2e+02 Score=27.05 Aligned_cols=48 Identities=17% Similarity=0.215 Sum_probs=32.4
Q ss_pred HHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEc
Q 015710 25 IALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (402)
Q Consensus 25 i~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL 81 (402)
..++|++|++..=++-|=.|.. +++. =+...+-+..++++||+|++|+
T Consensus 78 ~~mLkd~G~~~viiGHSERR~~--------f~Et-d~~V~~Kv~~al~~gl~pIvCi 125 (237)
T PRK14565 78 AKMLKECGCSYVILGHSERRST--------FHET-DSDIRLKAESAIESGLIPIICV 125 (237)
T ss_pred HHHHHHcCCCEEEECcccccCc--------CCcC-HHHHHHHHHHHHHCCCEEEEEc
Confidence 4788888888877775544332 2221 0223455589999999999999
No 211
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=20.22 E-value=2.4e+02 Score=25.57 Aligned_cols=65 Identities=14% Similarity=0.226 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHCC-CeEEEEccCCCCchhhHhhcCCCCChhhHHHHHHHHHHHHHHh---CCcceEEEeecC
Q 015710 61 DFYNNLINELISNG-LTPFVTLFHWDTPQALEDEYGGFLSPKIVKDFGDYADLCFKEF---GDRVKHWITLNE 129 (402)
Q Consensus 61 ~~y~~~i~~l~~~g-i~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~---g~~v~~w~t~NE 129 (402)
+....+|+.+++.. -+|||.+-|...|....+. ......+.+.+-.+.+++.+ |++=-|++.-.|
T Consensus 78 ~~~~~fv~~iR~~hP~tPIllv~~~~~~~~~~~~----~~~~~~~~~~~~~r~~v~~l~~~g~~nl~~l~g~~ 146 (178)
T PF14606_consen 78 ERLDGFVKTIREAHPDTPILLVSPIPYPAGYFDN----SRGETVEEFREALREAVEQLRKEGDKNLYYLDGEE 146 (178)
T ss_dssp HHHHHHHHHHHTT-SSS-EEEEE----TTTTS------TTS--HHHHHHHHHHHHHHHHHTT-TTEEEE-HHH
T ss_pred HHHHHHHHHHHHhCCCCCEEEEecCCccccccCc----hHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCchh
Confidence 56788999999887 8999999887777553332 22456788888888888888 777666666555
No 212
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=20.05 E-value=6.3e+02 Score=23.65 Aligned_cols=84 Identities=12% Similarity=0.131 Sum_probs=0.0
Q ss_pred hHHHHHHHHHcCCCceeeccccCcccccCCCCCCCChhHHHHHHHHHHHHHHCCCeEEEEccCCCCchhhHhhcCCCCCh
Q 015710 21 YKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSP 100 (402)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg~~~~ 100 (402)
+++-++.++++|++.+=+++.=.+..+.. ..++. .....+-+.|.++||+..........+.-+.. ..+
T Consensus 18 ~~e~~~~~~~~G~~~iEl~~~~~~~~~~~---~~~~~---~~~~~l~~~l~~~Gl~i~~~~~~~~~~~~~~~-----~d~ 86 (284)
T PRK13210 18 WEERLVFAKELGFDFVEMSVDESDERLAR---LDWSK---EERLSLVKAIYETGVRIPSMCLSGHRRFPFGS-----RDP 86 (284)
T ss_pred HHHHHHHHHHcCCCeEEEecCCccccccc---ccCCH---HHHHHHHHHHHHcCCCceEEecccccCcCCCC-----CCH
Q ss_pred hhHHHHHHHHHHHHH
Q 015710 101 KIVKDFGDYADLCFK 115 (402)
Q Consensus 101 ~~~~~f~~ya~~~~~ 115 (402)
+..+...++.+.+++
T Consensus 87 ~~r~~~~~~~~~~i~ 101 (284)
T PRK13210 87 ATRERALEIMKKAIR 101 (284)
T ss_pred HHHHHHHHHHHHHHH
No 213
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=20.02 E-value=8.3e+02 Score=23.92 Aligned_cols=109 Identities=16% Similarity=0.216 Sum_probs=62.4
Q ss_pred hHHHHHHHHHcCCCceeecc-ccCcccccCC-C----CCCCChhHHHHHHHHHHHHHHCCCeEEEEccCC---CCchhhH
Q 015710 21 YKEDIALVKQVGFDSIRFSI-SWSRILPHGN-I----SGGVNQQGVDFYNNLINELISNGLTPFVTLFHW---DTPQALE 91 (402)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si-~W~ri~P~~~-~----~g~~n~~~~~~y~~~i~~l~~~gi~p~vtL~H~---~~P~~l~ 91 (402)
..+=++.+++.|+..==+-+ .|........ . .-.+|.+..--..++|+.|+++|+++++.+.-+ +.+..+.
T Consensus 25 v~~~~~~~~~~~iP~d~i~lddw~~~~~~~~g~~~~~~f~~d~~~FPdp~~mi~~Lh~~G~~~~~~i~P~v~~~~~~~y~ 104 (317)
T cd06594 25 VLEALEKARAAGVKVAGLWLQDWTGRRETSFGDRLWWNWEWDPERYPGLDELIEELKARGIRVLTYINPYLADDGPLYYE 104 (317)
T ss_pred HHHHHHHHHHcCCCeeEEEEccccCcccccccceeeeeeEEChhhCCCHHHHHHHHHHCCCEEEEEecCceecCCchhHH
Confidence 34446788888776544433 4643211110 0 002344333335799999999999999877643 3333211
Q ss_pred hh--------------c--------CC---CCChhhHHHHHHHHHHHHHHhCCcceE-EEeecCCC
Q 015710 92 DE--------------Y--------GG---FLSPKIVKDFGDYADLCFKEFGDRVKH-WITLNEPE 131 (402)
Q Consensus 92 ~~--------------~--------gg---~~~~~~~~~f~~ya~~~~~~~g~~v~~-w~t~NEp~ 131 (402)
+- + ++ |+|++..+.|.+-.+......| |+. |+=+||+.
T Consensus 105 ~~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~G--vdg~w~D~~E~~ 168 (317)
T cd06594 105 EAKDAGYLVKDADGSPYLVDFGEFDCGVLDLTNPAARDWFKQVIKEMLLDLG--LSGWMADFGEYL 168 (317)
T ss_pred HHHHCCeEEECCCCCeeeeccCCCCceeeecCCHHHHHHHHHHHHHHhhhcC--CcEEEecCCCCC
Confidence 10 0 11 5778888888777776654443 544 56799964
Done!