BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015712
(402 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255572305|ref|XP_002527091.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223533514|gb|EEF35254.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 357
Score = 335 bits (858), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 193/368 (52%), Positives = 255/368 (69%), Gaps = 23/368 (6%)
Query: 36 MKRTGKSLVNLSKVLYS-----VKQINSSPVIRPLSTKTTTPTEETQQRVPSKPEKDSFI 90
MKRT K+ VNL+ S ++Q++ V+R LST TTT T + + + +KDSFI
Sbjct: 1 MKRTLKAFVNLALSSQSHPPLPIRQLS---VLRALSTTTTTTTRVSTESKEKESKKDSFI 57
Query: 91 LENFKLRKLNGSAKTNNPENKPSPPQPEQQQLSNIASE---REKSSGSNAEVVSSFQELG 147
LE F+ RKL GS KT +QQ+ SN ++ KS S EVVS F+ELG
Sbjct: 58 LEKFRQRKLQGSLKTTIATT------TKQQERSNCRADVVVGSKSEASIGEVVSGFEELG 111
Query: 148 LKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDE 207
LK E+ A ++G++VP+EIQCVGIPA+L GKS+VLSS SGSGRTL+YLLPLVQ+LR DE
Sbjct: 112 LKEEVAMAAGELGVWVPTEIQCVGIPAILEGKSLVLSSNSGSGRTLSYLLPLVQLLRGDE 171
Query: 208 ALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPI 267
AL MKP P+AIVLCTTEE +D+GF +AK IS ARL S G + E++S PI
Sbjct: 172 ALSGMKPKQPKAIVLCTTEELSDEGFRIAKSISDFARLSRS----GSDHLSPENMSKPPI 227
Query: 268 GMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNG 327
GMLI TP EV+Q IE+ +++ DDI+Y+VLD AD +FD GFGPEIS+I++ LK+ +SN
Sbjct: 228 GMLIGTPFEVVQQIEEGSIATDDIKYLVLDNADAMFDNGFGPEISRIISSLKNRKSQSND 287
Query: 328 QGFQTILVTAAIAEMLGEQLSSLMECLERDNAGKVTAMLLEMDQAEVFDLTESQDALKKK 387
Q QT+LVT + E+LG+ S ++E LE DNAGKVTA++L++DQ E F++ +S DALKKK
Sbjct: 288 QRLQTVLVTDTMTEVLGK--SGILERLEHDNAGKVTAIVLKIDQMEAFEIIKSSDALKKK 345
Query: 388 VVEAMDSL 395
+ EA+DS
Sbjct: 346 MAEAIDSF 353
>gi|356502333|ref|XP_003519974.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 39-like [Glycine
max]
Length = 373
Score = 275 bits (702), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 158/319 (49%), Positives = 210/319 (65%), Gaps = 18/319 (5%)
Query: 85 EKDSFILENFKLRKLNGSAKTNNPENKPSPPQPEQQQL---SNIASEREKSSGSNAE--- 138
++DS I E FK RKL GS P++ PQ + S+ +E+ G E
Sbjct: 61 QRDSLIFEQFKQRKLKGS-----PKDSKGTPQVCSTSVPLSSDADTEKVVQKGVRNENDP 115
Query: 139 --VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYL 196
VV F+ELG+ E+++ +E +G FVP+EIQCV IPAVL GKSV+LSS S RTLA+L
Sbjct: 116 TLVVRGFKELGVSEELVEVMEGIGEFVPTEIQCVAIPAVLEGKSVLLSSPSEPDRTLAFL 175
Query: 197 LPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSS 256
LPL+Q+LRRD LL +P+AIVLC TEE ++Q F+ AK+I H A L S+ ++ +
Sbjct: 176 LPLIQLLRRDGGLLGSNSKYPQAIVLCATEEKSEQCFNAAKYIIHNAELKSAKDSASPDN 235
Query: 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
S A IG++I TPSE+L++IE+ +V +IRY+VLDEAD + G GPEI KIL
Sbjct: 236 GQ----SKASIGLMIGTPSEILEYIEEGSVVPAEIRYLVLDEADCMLGSGLGPEIHKILR 291
Query: 317 PLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAGKVTAMLLEMDQAEVFD 376
PL+D KS + QTIL + IAE+LGEQ SS+++ LE D+AG ++AM LEM+Q EVF
Sbjct: 292 PLQDQESKSCVKRLQTILAISTIAEVLGEQ-SSVVKHLECDHAGNISAMSLEMEQTEVFH 350
Query: 377 LTESQDALKKKVVEAMDSL 395
TES DAL+KKV EAMDSL
Sbjct: 351 FTESLDALRKKVAEAMDSL 369
>gi|225463083|ref|XP_002263640.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 39 [Vitis vinifera]
Length = 635
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 141/279 (50%), Positives = 191/279 (68%), Gaps = 18/279 (6%)
Query: 83 KPEKDSFILENFKLRKLNGSAKTNNPENKPSPPQPEQQQLSNIASEREKSSGSNAE---V 139
+P + S +LE + R L SAK+ P+ + SPP LS E E S + + +
Sbjct: 67 QPMRHSILLEKLRFRHLKDSAKS--PQTR-SPP------LSTGGKEGEPGSMKSQKKPKM 117
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
VSSF+ELGL E++ AV + G+ VP+EIQC+G+PAVL G+SVVL S +GSG+TLAY+LPL
Sbjct: 118 VSSFEELGLSEEVMAAVRETGISVPTEIQCIGVPAVLEGRSVVLGSHTGSGKTLAYMLPL 177
Query: 200 VQMLRRDEAL--LPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
VQ+LRRDEAL + MKP PRA+VLC T E ++Q F +AK ISH AR S+M +GG +
Sbjct: 178 VQLLRRDEALSGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLR 237
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNP 317
ED N PI M++ TP VLQHIE+ N+ +I+Y+VLDEADT+FDRGFGP+I K L P
Sbjct: 238 PQEDSLNIPIDMVVGTPGRVLQHIEEGNMVYGEIKYLVLDEADTMFDRGFGPDIRKFLAP 297
Query: 318 LKDSALKSNGQGFQTILVTA----AIAEMLGEQLSSLME 352
LK+ A KS+ QGFQT+LVTA A+ +++ E+ ++
Sbjct: 298 LKNRASKSDDQGFQTVLVTATMTKAVQKLIDEEFQGIVH 336
>gi|115434952|ref|NP_001042234.1| Os01g0184500 [Oryza sativa Japonica Group]
gi|75321764|sp|Q5VRY0.1|RH39_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 39
gi|55295927|dbj|BAD67795.1| putative VASA [Oryza sativa Japonica Group]
gi|113531765|dbj|BAF04148.1| Os01g0184500 [Oryza sativa Japonica Group]
gi|222617875|gb|EEE54007.1| hypothetical protein OsJ_00660 [Oryza sativa Japonica Group]
Length = 625
Score = 259 bits (662), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 139/288 (48%), Positives = 183/288 (63%), Gaps = 14/288 (4%)
Query: 72 PTE-ETQQRVPSKPEKDSFILENFKLRKLNGSAKTNNPENKPSPPQPEQQQLSNIASERE 130
PTE ET R P + +LE + R L G P P P Q E+ + +E
Sbjct: 47 PTEPETTAR--EAPSRHELLLERLRQRHLKGV-----PAATPRPAQREKGRGGGGGGAQE 99
Query: 131 KSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSG 190
EVV SF+ELGL E++ A+ +MG+ P+EIQCVG+PAVL G SVVL S +GSG
Sbjct: 100 LQQKRRVEVVDSFEELGLGEEVMAALGEMGISKPTEIQCVGVPAVLAGTSVVLGSHTGSG 159
Query: 191 RTLAYLLPLVQMLRRDEALL--PMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSS 248
+TLAYLLPLVQ+LRRDEA+L MKP PRA+VLC T E +Q F +AK ISH AR S+
Sbjct: 160 KTLAYLLPLVQLLRRDEAMLGMSMKPRRPRAVVLCPTRELTEQVFRVAKSISHHARFRST 219
Query: 249 MENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFG 308
M +GG + ED N P+ M++ TP +L HI+D N+ DI+Y+VLDEADT+FD+GFG
Sbjct: 220 MVSGGSRIRPQEDSLNMPVDMVVGTPGRILDHIKDGNMVYGDIKYLVLDEADTMFDQGFG 279
Query: 309 PEISKILNPLKDSALKSNGQGFQTILVTA----AIAEMLGEQLSSLME 352
P+I K L PLK+ A K QGFQT+LVTA A+ +++ E+ ++
Sbjct: 280 PDIRKFLAPLKNRAAKPGDQGFQTVLVTATMTKAVQKLIDEEFEGIVH 327
>gi|218187644|gb|EEC70071.1| hypothetical protein OsI_00680 [Oryza sativa Indica Group]
Length = 618
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 139/289 (48%), Positives = 184/289 (63%), Gaps = 15/289 (5%)
Query: 70 TTPTEETQQRVPSKPEKDSFILENFKLRKLNGSAKTNNPENKPSPPQPEQQQLSNIASER 129
T PTE R P + +LE + R L G P P P Q E+ + A E
Sbjct: 46 TAPTEPDAAR--EAPSRHELLLERLRQRHLKGV-----PAATPRPAQREKGRGGGGAQEL 98
Query: 130 EKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGS 189
++ EVV SF+ELGL E++ A+ +MG+ P+EIQCVG+PAVL G SVVL S +GS
Sbjct: 99 QQKR--RVEVVESFEELGLGEEVMAALGEMGISKPTEIQCVGVPAVLAGTSVVLGSHTGS 156
Query: 190 GRTLAYLLPLVQMLRRDEALL--PMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDS 247
G+TLAYLLPLVQ+LRRDEA+L MKP PRA+VLC T E +Q F +AK ISH AR S
Sbjct: 157 GKTLAYLLPLVQLLRRDEAMLGMSMKPRRPRAVVLCPTRELTEQVFRVAKSISHHARFRS 216
Query: 248 SMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGF 307
+M +GG + ED N P+ M++ TP +L HI+D N+ DI+Y+VLDEADT+FD+GF
Sbjct: 217 TMVSGGSRIRPQEDSLNMPVDMVVGTPGRILDHIKDGNMVYGDIKYLVLDEADTMFDQGF 276
Query: 308 GPEISKILNPLKDSALKSNGQGFQTILVTA----AIAEMLGEQLSSLME 352
GP+I K L PLK+ A K QGFQT+LVTA A+ +++ E+ ++
Sbjct: 277 GPDIRKFLAPLKNRAAKPGDQGFQTVLVTATMTKAVQKLIDEEFEGIVH 325
>gi|255572303|ref|XP_002527090.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223533513|gb|EEF35253.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 601
Score = 255 bits (652), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 129/238 (54%), Positives = 171/238 (71%), Gaps = 9/238 (3%)
Query: 124 NIASEREKS---SGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKS 180
N+ +E++ S S ++ SF+EL L E++ AV +M + VP+EIQC+GIPAVL+GKS
Sbjct: 101 NVETEKDDSFNKSKKGKKIAGSFEELSLSDEVMGAVREMEIEVPTEIQCIGIPAVLDGKS 160
Query: 181 VVLSSGSGSGRTLAYLLPLVQMLRRDEALLP--MKPMHPRAIVLCTTEESADQGFHMAKF 238
VVL S +GSG+TLAY+LPLVQ+LRRDEALL MKP PRAIVLC T E ++Q F +AK
Sbjct: 161 VVLGSHTGSGKTLAYMLPLVQLLRRDEALLGLLMKPRRPRAIVLCPTRELSEQVFRVAKS 220
Query: 239 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 298
ISH AR S+M +GG + ED N+PI M++ TP +LQHIED N+ DI+Y+VLDE
Sbjct: 221 ISHHARFRSTMVSGGGRMRPQEDSLNSPIDMIVGTPGRILQHIEDGNMVYGDIKYLVLDE 280
Query: 299 ADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTA----AIAEMLGEQLSSLME 352
ADT+FDRGFGP+I K L PLK+ A K +G GFQTILVTA A+ +++ E+ ++
Sbjct: 281 ADTMFDRGFGPDIRKFLGPLKNRASKPDGLGFQTILVTATMTKAVQKLIDEEFQGIVH 338
>gi|224085245|ref|XP_002307523.1| predicted protein [Populus trichocarpa]
gi|222856972|gb|EEE94519.1| predicted protein [Populus trichocarpa]
Length = 573
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 122/218 (55%), Positives = 162/218 (74%), Gaps = 6/218 (2%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
+ SF+ELGL E++ AV++MG+ VP+EIQC+GIPA+L+ ++VVL S +GSG+TLAY+LP
Sbjct: 114 IAGSFEELGLSEEVMGAVKEMGIEVPTEIQCIGIPAILDSRTVVLGSHTGSGKTLAYMLP 173
Query: 199 LVQMLRRDEALLP--MKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSS 256
LVQ+LRRDEALL MKP PRA+VLC T E ++Q F +AK I H AR S+M +GG
Sbjct: 174 LVQLLRRDEALLGRLMKPRRPRAVVLCPTRELSEQVFRVAKSIGHHARFRSTMVSGGGRM 233
Query: 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ ED N PI M++ TP VLQHI+D N+ DI+Y+VLDEADT+FDRGFGP+I K L
Sbjct: 234 RPQEDSLNNPIDMVVGTPGRVLQHIQDGNMVYGDIKYLVLDEADTMFDRGFGPDIHKFLG 293
Query: 317 PLKDSALKSNGQGFQTILVTA----AIAEMLGEQLSSL 350
PLK+ KS+GQGFQTILVTA A+ +++ E+ +
Sbjct: 294 PLKNRTSKSDGQGFQTILVTATMTKAVQKLIDEEFQGI 331
>gi|358346247|ref|XP_003637181.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355503116|gb|AES84319.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 684
Score = 250 bits (638), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 141/313 (45%), Positives = 192/313 (61%), Gaps = 20/313 (6%)
Query: 50 LYSVKQINSSPVI----RPLSTKTTTPTEETQQRVPSKPEKDSFILENFKLRKLNGSAKT 105
L+ + Q N SP+ P S+ TTTP EK SF+LE ++R L G ++
Sbjct: 24 LFKLSQ-NPSPLFPKRFTPFSSLTTTPQSSPSLLSDPDQEKHSFLLEKLRIRHLKGGSR- 81
Query: 106 NNPENKPSPPQPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPS 165
N + + E+ G V SF+ LGL E++ AV +MG+ VP+
Sbjct: 82 ----NDERVVRKVEGVKKKKEGVDEEDGGG----VGSFEGLGLGDEVMGAVREMGIEVPT 133
Query: 166 EIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEAL--LPMKPMHPRAIVLC 223
EIQC+G+PAVL+GKSVVL S +GSG+TLAYLLPLVQ+LRRDE + L +KP PRA+VLC
Sbjct: 134 EIQCIGVPAVLDGKSVVLGSHTGSGKTLAYLLPLVQLLRRDEQMNGLVLKPKRPRAVVLC 193
Query: 224 TTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIED 283
T E ++Q F +AK ISH AR +M +GG + E+ + PI M++ TP +LQHIE+
Sbjct: 194 PTRELSEQVFRVAKAISHHARFRCTMVSGGGRLRPQEESLSNPIDMVVGTPGRILQHIEE 253
Query: 284 RNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTA----AI 339
N+ DI+YVVLDEADT+FDRGFGP+I K L PLK A K + GFQT+LVTA A+
Sbjct: 254 GNMVYGDIQYVVLDEADTMFDRGFGPDIKKFLAPLKHRASKPDSLGFQTVLVTATMTKAV 313
Query: 340 AEMLGEQLSSLME 352
++ E+ ++
Sbjct: 314 QNLVDEEFQGIVH 326
>gi|242051801|ref|XP_002455046.1| hypothetical protein SORBIDRAFT_03g003520 [Sorghum bicolor]
gi|241927021|gb|EES00166.1| hypothetical protein SORBIDRAFT_03g003520 [Sorghum bicolor]
Length = 612
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 132/291 (45%), Positives = 181/291 (62%), Gaps = 32/291 (10%)
Query: 94 FKLR----KLNGSAKTNNPENKPSPP--------------------QPEQQQLSNIASER 129
F+LR L+ +A T P + P+PP P ++ +ER
Sbjct: 21 FRLRLLRAALSTAAPTIGPTSTPAPPPRHELLLERLRLRHLKDASSSPGAPAPASRGAER 80
Query: 130 --EKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGS 187
++ G E SF+ELGL E++ A+ +MG+ P+EIQCVG+PAVL G SVVL S +
Sbjct: 81 SSQQGKGKRVEAAESFEELGLGEEVMAALGEMGISKPTEIQCVGVPAVLAGTSVVLGSHT 140
Query: 188 GSGRTLAYLLPLVQMLRRDEALL--PMKPMHPRAIVLCTTEESADQGFHMAKFISHCARL 245
GSG+TLAYLLPLVQ+LRRDEA+L MKP PRA+VLC T E +Q + +AK ISH AR
Sbjct: 141 GSGKTLAYLLPLVQLLRRDEAMLGISMKPRRPRAVVLCPTRELTEQVYRVAKSISHHARF 200
Query: 246 DSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDR 305
S+M +GG + ED N P+ M++ TP +L HI+D N+ DI+Y+VLDEADT+FD+
Sbjct: 201 RSTMVSGGTRLRPQEDSLNMPVDMVVGTPGRILDHIKDGNMVYGDIKYLVLDEADTMFDQ 260
Query: 306 GFGPEISKILNPLKDSALKSNGQGFQTILVTA----AIAEMLGEQLSSLME 352
GFGP+I K L PLK+ A K QGFQT+LVTA A+ +++ E+ ++
Sbjct: 261 GFGPDIRKFLAPLKNRAAKPGDQGFQTVLVTATMTKAVQKLIDEEFEGIVH 311
>gi|212275171|ref|NP_001130422.1| uncharacterized protein LOC100191518 [Zea mays]
gi|194689078|gb|ACF78623.1| unknown [Zea mays]
gi|224029523|gb|ACN33837.1| unknown [Zea mays]
gi|413942755|gb|AFW75404.1| putative DEAD-box ATP-dependent RNA helicase family protein [Zea
mays]
Length = 613
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 119/225 (52%), Positives = 159/225 (70%), Gaps = 6/225 (2%)
Query: 134 GSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTL 193
G E SF+ELGL E++ A+ +MG+ P+EIQCVG+PAVL G SVVL S +GSG+TL
Sbjct: 88 GKRVEAAESFEELGLGEEVMSALGEMGISKPTEIQCVGVPAVLAGTSVVLGSHTGSGKTL 147
Query: 194 AYLLPLVQMLRRDEALL--PMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMEN 251
AYLLPLVQ+LRRDEA+L MKP PRA+VLC T E +Q + +AK ISH AR S+M +
Sbjct: 148 AYLLPLVQLLRRDEAMLGMSMKPRRPRAVVLCPTRELTEQVYRVAKSISHHARFRSTMVS 207
Query: 252 GGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEI 311
GG + ED N P+ M++ TP +L HI+D N+ DI+Y+VLDEADT+FD+GFGP+I
Sbjct: 208 GGTRLRPQEDSLNMPVDMVVGTPGRILDHIKDGNMVYGDIKYLVLDEADTMFDQGFGPDI 267
Query: 312 SKILNPLKDSALKSNGQGFQTILVTA----AIAEMLGEQLSSLME 352
K L PLK+ A K + QGFQT+LVTA A+ +++ E+ ++
Sbjct: 268 RKFLAPLKNRAAKPDDQGFQTVLVTATMTKAVQKLIDEEFEGIVH 312
>gi|449443857|ref|XP_004139692.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 39-like [Cucumis
sativus]
Length = 634
Score = 244 bits (623), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 136/275 (49%), Positives = 180/275 (65%), Gaps = 11/275 (4%)
Query: 84 PEKDSFILENFKLRKLNGSAKTNNPENKPSPPQPEQQQLSNIASEREKSSGSNAEVVSSF 143
P K S +LE + R L SA P+ KP+ Q + + E +KS ++ SF
Sbjct: 68 PLKHSQLLERLRTRHLKESA----PKTKPTR-NTLSQSVGSAEDEMKKSEKKKKKLDESF 122
Query: 144 QELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQML 203
+ELGL E++ AV +MG+ VPSEIQC+GIPAVL GKSV+L S +GSG+TLAYLLPLVQ+L
Sbjct: 123 EELGLNEEVMGAVREMGIQVPSEIQCIGIPAVLEGKSVILGSHTGSGKTLAYLLPLVQLL 182
Query: 204 RRDEALLP--MKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
RRDE L MKP PRA+VLC T E ++Q F ++K ISH AR S+M +GG + ED
Sbjct: 183 RRDEELFGRLMKPRRPRAVVLCPTRELSEQVFRVSKSISHHARFRSTMVSGGGRLRPQED 242
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDS 321
+ PI M++ TP VLQHIE N+ DI+Y+VLDEADT+FD GFGP+I K + PLK
Sbjct: 243 SLSNPIDMVVGTPGRVLQHIEAGNMVYGDIKYLVLDEADTMFDHGFGPDIRKFIGPLKHR 302
Query: 322 ALKSNGQGFQTILVTA----AIAEMLGEQLSSLME 352
A + QGFQTILVTA A+ +++ E+ ++
Sbjct: 303 ASSHDDQGFQTILVTATMTKAVQKLIDEEFQGIVH 337
>gi|449510866|ref|XP_004163791.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 39-like [Cucumis
sativus]
Length = 634
Score = 244 bits (622), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 136/275 (49%), Positives = 180/275 (65%), Gaps = 11/275 (4%)
Query: 84 PEKDSFILENFKLRKLNGSAKTNNPENKPSPPQPEQQQLSNIASEREKSSGSNAEVVSSF 143
P K S +LE + R L SA P+ KP+ Q + + E +KS ++ SF
Sbjct: 68 PLKHSQLLERLRTRHLKESA----PKTKPTR-NTLSQSVGSAEDEMKKSEKKKKKLDESF 122
Query: 144 QELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQML 203
+ELGL E++ AV +MG+ VPSEIQC+GIPAVL GKSV+L S +GSG+TLAYLLPLVQ+L
Sbjct: 123 EELGLNEEVMGAVREMGIQVPSEIQCIGIPAVLEGKSVILGSHTGSGKTLAYLLPLVQLL 182
Query: 204 RRDEALLP--MKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
RRDE L MKP PRA+VLC T E ++Q F ++K ISH AR S+M +GG + ED
Sbjct: 183 RRDEELFGRLMKPRRPRAVVLCPTRELSEQVFRVSKSISHHARFRSTMVSGGGRLRPQED 242
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDS 321
+ PI M++ TP VLQHIE N+ DI+Y+VLDEADT+FD GFGP+I K + PLK
Sbjct: 243 SLSNPIDMVVGTPGRVLQHIEAGNMVYGDIKYLVLDEADTMFDHGFGPDIRKFIGPLKHR 302
Query: 322 ALKSNGQGFQTILVTA----AIAEMLGEQLSSLME 352
A + QGFQTILVTA A+ +++ E+ ++
Sbjct: 303 ASSHDDQGFQTILVTATMTKAVQKLIDEEFQGIVH 337
>gi|413942754|gb|AFW75403.1| putative DEAD-box ATP-dependent RNA helicase family protein [Zea
mays]
Length = 360
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 119/225 (52%), Positives = 159/225 (70%), Gaps = 6/225 (2%)
Query: 134 GSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTL 193
G E SF+ELGL E++ A+ +MG+ P+EIQCVG+PAVL G SVVL S +GSG+TL
Sbjct: 88 GKRVEAAESFEELGLGEEVMSALGEMGISKPTEIQCVGVPAVLAGTSVVLGSHTGSGKTL 147
Query: 194 AYLLPLVQMLRRDEALL--PMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMEN 251
AYLLPLVQ+LRRDEA+L MKP PRA+VLC T E +Q + +AK ISH AR S+M +
Sbjct: 148 AYLLPLVQLLRRDEAMLGMSMKPRRPRAVVLCPTRELTEQVYRVAKSISHHARFRSTMVS 207
Query: 252 GGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEI 311
GG + ED N P+ M++ TP +L HI+D N+ DI+Y+VLDEADT+FD+GFGP+I
Sbjct: 208 GGTRLRPQEDSLNMPVDMVVGTPGRILDHIKDGNMVYGDIKYLVLDEADTMFDQGFGPDI 267
Query: 312 SKILNPLKDSALKSNGQGFQTILVTA----AIAEMLGEQLSSLME 352
K L PLK+ A K + QGFQT+LVTA A+ +++ E+ ++
Sbjct: 268 RKFLAPLKNRAAKPDDQGFQTVLVTATMTKAVQKLIDEEFEGIVH 312
>gi|30681173|ref|NP_849348.1| DEAD-box ATP-dependent RNA helicase 39 [Arabidopsis thaliana]
gi|108861892|sp|Q56X76.2|RH39_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 39
gi|34365771|gb|AAQ65197.1| At4g09730 [Arabidopsis thaliana]
gi|51968836|dbj|BAD43110.1| unnamed protein product [Arabidopsis thaliana]
gi|51969012|dbj|BAD43198.1| unnamed protein product [Arabidopsis thaliana]
gi|51969674|dbj|BAD43529.1| unnamed protein product [Arabidopsis thaliana]
gi|332657387|gb|AEE82787.1| DEAD-box ATP-dependent RNA helicase 39 [Arabidopsis thaliana]
Length = 621
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 121/243 (49%), Positives = 168/243 (69%), Gaps = 8/243 (3%)
Query: 116 QPEQQQLSNIASEREKSS--GSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIP 173
+P QQ+ S++ E+SS + ++V +FQELGL E++ A++++ + VP+EIQC+GIP
Sbjct: 85 KPPQQRPSSVVGVEEESSIRKKSKKLVENFQELGLSEEVMGALQELNIEVPTEIQCIGIP 144
Query: 174 AVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALL--PMKPMHPRAIVLCTTEESADQ 231
AV+ KSVVL S +GSG+TLAYLLP+VQ++R DEA L KP PR +VLC T E ++Q
Sbjct: 145 AVMERKSVVLGSHTGSGKTLAYLLPIVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQ 204
Query: 232 GFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDI 291
+ +AK ISH AR S + +GG + ED N I M++ TP +LQHIE+ N+ DI
Sbjct: 205 VYRVAKSISHHARFRSILVSGGSRIRPQEDSLNNAIDMVVGTPGRILQHIEEGNMVYGDI 264
Query: 292 RYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTA----AIAEMLGEQL 347
Y+VLDEADT+FDRGFGPEI K L PL ALK+N QGFQT+LVTA A+ +++ E+
Sbjct: 265 AYLVLDEADTMFDRGFGPEIRKFLAPLNQRALKTNDQGFQTVLVTATMTMAVQKLVDEEF 324
Query: 348 SSL 350
+
Sbjct: 325 QGI 327
>gi|356499257|ref|XP_003518458.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 39-like [Glycine
max]
Length = 636
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 129/258 (50%), Positives = 172/258 (66%), Gaps = 7/258 (2%)
Query: 86 KDSFILENFKLRKLNGSAKTNNPENKPSPPQPEQQQLSNIASEREKSSGSNAEVVSSFQE 145
K S +LE + R L +AK P P + E+ + A+ + + V+SF+E
Sbjct: 79 KHSILLERLRSRHLRDAAKA-----APEPRKKEKVAAAAAAAAAAAEAKEKKKAVASFEE 133
Query: 146 LGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRR 205
LGL E++ AV +MG+ VP+EIQ +GIPAVL KSVVL S +GSG+TLAYLLPL Q+LRR
Sbjct: 134 LGLSEEVMGAVREMGIEVPTEIQSIGIPAVLEEKSVVLGSHTGSGKTLAYLLPLAQLLRR 193
Query: 206 DEAL--LPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS 263
DE L + +KP PRA+VLC T E ++Q F +AK ISH AR +M +GG + ED
Sbjct: 194 DEQLNGILLKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRCTMVSGGGRLRPQEDSL 253
Query: 264 NAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSAL 323
N PI +++ TP VLQHIE+ N+ DI+Y+VLDEADT+FDRGFGP+I K + PLK+ A
Sbjct: 254 NNPIDVVVGTPGRVLQHIEEGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFIGPLKNRAS 313
Query: 324 KSNGQGFQTILVTAAIAE 341
K +G GFQTILVTA + +
Sbjct: 314 KPDGLGFQTILVTATMTK 331
>gi|51968848|dbj|BAD43116.1| unnamed protein product [Arabidopsis thaliana]
Length = 621
Score = 234 bits (598), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 121/243 (49%), Positives = 167/243 (68%), Gaps = 8/243 (3%)
Query: 116 QPEQQQLSNIASEREKSS--GSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIP 173
+P QQ+ S++ E+SS + ++V +FQELGL E++ A++++ + VP+EIQC+GIP
Sbjct: 85 KPPQQRPSSVVGVEEESSIRKKSKKLVENFQELGLSEEVMGALQELNIEVPTEIQCIGIP 144
Query: 174 AVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALL--PMKPMHPRAIVLCTTEESADQ 231
AV+ KSVVL S +GSG+TLAYLLP+VQ++R DEA L KP PR +VLC T E ++Q
Sbjct: 145 AVMERKSVVLGSHTGSGKTLAYLLPIVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQ 204
Query: 232 GFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDI 291
+ +AK ISH AR S + +GG + ED N I M+ TP +LQHIE+ N+ DI
Sbjct: 205 VYRVAKSISHHARFRSILVSGGSRIRPQEDSLNNAIDMVAGTPGRILQHIEEGNMVYGDI 264
Query: 292 RYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTA----AIAEMLGEQL 347
Y+VLDEADT+FDRGFGPEI K L PL ALK+N QGFQT+LVTA A+ +++ E+
Sbjct: 265 AYLVLDEADTMFDRGFGPEIRKFLAPLNQRALKTNDQGFQTVLVTATMTMAVQKLVDEEF 324
Query: 348 SSL 350
+
Sbjct: 325 QGI 327
>gi|297739373|emb|CBI29363.3| unnamed protein product [Vitis vinifera]
Length = 505
Score = 234 bits (596), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 114/204 (55%), Positives = 151/204 (74%), Gaps = 6/204 (2%)
Query: 155 AVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEAL--LPM 212
AV + G+ VP+EIQC+G+PAVL G+SVVL S +GSG+TLAY+LPLVQ+LRRDEAL + M
Sbjct: 3 AVRETGISVPTEIQCIGVPAVLEGRSVVLGSHTGSGKTLAYMLPLVQLLRRDEALSGVLM 62
Query: 213 KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIA 272
KP PRA+VLC T E ++Q F +AK ISH AR S+M +GG + ED N PI M++
Sbjct: 63 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNIPIDMVVG 122
Query: 273 TPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQT 332
TP VLQHIE+ N+ +I+Y+VLDEADT+FDRGFGP+I K L PLK+ A KS+ QGFQT
Sbjct: 123 TPGRVLQHIEEGNMVYGEIKYLVLDEADTMFDRGFGPDIRKFLAPLKNRASKSDDQGFQT 182
Query: 333 ILVTA----AIAEMLGEQLSSLME 352
+LVTA A+ +++ E+ ++
Sbjct: 183 VLVTATMTKAVQKLIDEEFQGIVH 206
>gi|297809151|ref|XP_002872459.1| hypothetical protein ARALYDRAFT_911240 [Arabidopsis lyrata subsp.
lyrata]
gi|297318296|gb|EFH48718.1| hypothetical protein ARALYDRAFT_911240 [Arabidopsis lyrata subsp.
lyrata]
Length = 620
Score = 234 bits (596), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 121/248 (48%), Positives = 169/248 (68%), Gaps = 8/248 (3%)
Query: 111 KPSPPQPEQQQLSNIASEREKSS--GSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQ 168
K S P+Q+ S++ E++S + ++V +FQELGL E++ A++++ + VP+EIQ
Sbjct: 80 KESAKPPQQRPSSSVVGVEEENSIRKKSKKLVENFQELGLSEEVMGALQELNIEVPTEIQ 139
Query: 169 CVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALL--PMKPMHPRAIVLCTTE 226
C+GIPAV+ KSVVL S +GSG+TLAYLLP+VQ++R DEA L KP PR +VLC T
Sbjct: 140 CIGIPAVMERKSVVLGSHTGSGKTLAYLLPIVQLMREDEANLGKKTKPRRPRTVVLCPTR 199
Query: 227 ESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNV 286
E ++Q + +AK ISH AR S + +GG + ED N I M++ TP +LQHIE+ N+
Sbjct: 200 ELSEQVYRVAKSISHHARFRSILVSGGSRIRPQEDSLNNAIDMVVGTPGRILQHIEEGNM 259
Query: 287 SCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTA----AIAEM 342
DI Y+VLDEADT+FDRGFGPEI K L PL ALK+N QGFQT+LVTA A+ ++
Sbjct: 260 VYGDITYLVLDEADTMFDRGFGPEIRKFLAPLNQRALKTNDQGFQTVLVTATMTTAVQKL 319
Query: 343 LGEQLSSL 350
+ E+ +
Sbjct: 320 VDEEFQGI 327
>gi|449446492|ref|XP_004141005.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 39-like [Cucumis
sativus]
Length = 357
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 139/351 (39%), Positives = 204/351 (58%), Gaps = 31/351 (8%)
Query: 46 LSKVLYSVKQINSSPVIRPLSTKTTTPTEETQQRVPSKPEKDSFILENFKLRKLNGSAKT 105
LS + Q SS R S+ TP E Q P + +DS +LE F+LRKL G
Sbjct: 32 LSTNAFLASQFCSSTFSR--SSTDGTPVENEQ---PRQSNRDSTLLEKFRLRKLKG---- 82
Query: 106 NNPENKPSPPQPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPS 165
LS I+ + S+G + ++ F++LGL E+ +AVEKMG+ PS
Sbjct: 83 ----------------LSKISQDSPSSNGGE-KAMTGFRDLGLCNELGEAVEKMGVLAPS 125
Query: 166 EIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTT 225
E+ C GIPAVL GK+VV R LAYLLPL+Q L+RDE + HPRA V+C T
Sbjct: 126 ELDCAGIPAVLEGKNVVFGYLDEPERALAYLLPLIQNLKRDEKRYGTRSKHPRAFVMCPT 185
Query: 226 EESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRN 285
+ +++ F MAK+ S+ +L + +NG + + S+ IG+LI TP E+ + IED +
Sbjct: 186 AQLSEELFCMAKYFSNYRQLKTPRDNGCGELELQKSASDVSIGLLIGTPDEISELIEDGS 245
Query: 286 VSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 345
V D+I Y+V DE D++FD GFGP I KIL +++ K Q+I+VT+ + +M+ E
Sbjct: 246 VVLDEINYLVFDELDSMFDLGFGPNIKKILTSVRNCNKKC-----QSIVVTSTLIKMMHE 300
Query: 346 QLSSLMECLERDNAGKVTAMLLEMDQAEVFDLTESQDALKKKVVEAMDSLH 396
Q SSL++ L +AG++ AM+LE+++ E F L ES DALK K+ + ++SL
Sbjct: 301 QRSSLVKSLRCGDAGEIAAMVLEIEEEEAFHLMESPDALKSKLADVVESLR 351
>gi|357125633|ref|XP_003564496.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 39-like
[Brachypodium distachyon]
Length = 625
Score = 231 bits (589), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 113/217 (52%), Positives = 154/217 (70%), Gaps = 6/217 (2%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ELGL+ E++ A+ + G+ P+EIQCVG+PAVL+G SVVL S +GSG+TLAYLLPLVQ
Sbjct: 92 SFEELGLEEEVMAAMREAGISKPTEIQCVGVPAVLSGTSVVLGSHTGSGKTLAYLLPLVQ 151
Query: 202 MLRRDEALLPM--KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
+LR DEA L M KP PRA+VLC T E +Q F +AK ISH AR S+M +GG +
Sbjct: 152 LLRHDEATLGMSLKPRRPRAVVLCPTRELTEQVFRVAKSISHHARFRSTMVSGGTRLRPQ 211
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319
ED N P+ M++ TP +L HI++ N+ DI+Y+VLDEADT+FD+GFG +I K L PLK
Sbjct: 212 EDSLNMPVDMVVGTPGRILDHIKEGNIVYGDIKYLVLDEADTMFDQGFGEDIRKFLAPLK 271
Query: 320 DSALKSNGQGFQTILVTA----AIAEMLGEQLSSLME 352
+ A K QGFQT+LV+A A+ +++ E+ ++
Sbjct: 272 NRASKPGDQGFQTVLVSATMTKAVQKLIDEEFEGIVH 308
>gi|449494189|ref|XP_004159473.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 39-like [Cucumis
sativus]
Length = 357
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 138/351 (39%), Positives = 203/351 (57%), Gaps = 31/351 (8%)
Query: 46 LSKVLYSVKQINSSPVIRPLSTKTTTPTEETQQRVPSKPEKDSFILENFKLRKLNGSAKT 105
LS + Q SS R S+ TP E Q P + +DS +LE F+LRKL G
Sbjct: 32 LSTNAFLASQFCSSTFSR--SSTDGTPVENEQ---PRQSNRDSTLLEKFRLRKLKG---- 82
Query: 106 NNPENKPSPPQPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPS 165
LS I+ + S+G + ++ F++LGL E+ +AVEKMG+ PS
Sbjct: 83 ----------------LSKISQDSPSSNGGE-KAMTGFRDLGLCNELGEAVEKMGVLAPS 125
Query: 166 EIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTT 225
E+ C GIPAVL GK+VV R LAYLLPL+Q L+RDE + HPRA V+C T
Sbjct: 126 ELDCAGIPAVLEGKNVVFGYLDEPERALAYLLPLIQNLKRDEKRYGTRSKHPRAFVMCPT 185
Query: 226 EESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRN 285
+ +++ F MAK+ S+ +L + +NG + + S+ IG+LI TP E+ + IED +
Sbjct: 186 AQLSEELFCMAKYFSNYRQLKTPRDNGCGELELQKSASDVSIGLLIGTPDEISELIEDGS 245
Query: 286 VSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 345
V D+I Y+V DE D++F GFGP I KIL +++ K Q+I+VT+ + +M+ E
Sbjct: 246 VVLDEINYLVFDELDSMFGLGFGPNIKKILTSVRNCNKKC-----QSIVVTSTLIKMMHE 300
Query: 346 QLSSLMECLERDNAGKVTAMLLEMDQAEVFDLTESQDALKKKVVEAMDSLH 396
Q SSL++ L +AG++ AM+LE+++ E F L ES DALK K+ + ++SL
Sbjct: 301 QRSSLVKSLRCGDAGEIAAMVLEIEEEEAFHLMESPDALKSKLADVVESLR 351
>gi|326523585|dbj|BAJ92963.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 653
Score = 214 bits (544), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 106/203 (52%), Positives = 141/203 (69%), Gaps = 2/203 (0%)
Query: 155 AVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALL--PM 212
A+ + G+ P+EIQCVG+PAVL+G SVVL S +GSG+TLAYLLPLVQ+LR DEA L M
Sbjct: 132 AMREAGITKPTEIQCVGVPAVLSGTSVVLGSHTGSGKTLAYLLPLVQLLRHDEATLGMSM 191
Query: 213 KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIA 272
KP PRA+VLC T E +Q F +AK ISH AR S+M +GG K ED N P+ M++
Sbjct: 192 KPRRPRAVVLCPTRELTEQVFRVAKSISHHARFRSTMVSGGTRLKPQEDSLNMPVDMVVG 251
Query: 273 TPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQT 332
TP +L HI++ N+ DI+Y+VLDEADT+FD+GFG +I K L PLK+ + K QG QT
Sbjct: 252 TPGRILDHIKEGNIVYGDIKYLVLDEADTMFDQGFGEDIRKFLAPLKNRSSKPGDQGLQT 311
Query: 333 ILVTAAIAEMLGEQLSSLMECLE 355
ILV+A + + + + + E +E
Sbjct: 312 ILVSATMTKGVQKLIDEEFEGIE 334
>gi|168002750|ref|XP_001754076.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694630|gb|EDQ80977.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 655
Score = 211 bits (537), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 112/253 (44%), Positives = 163/253 (64%), Gaps = 17/253 (6%)
Query: 91 LENFKLRKLNGSAKTNNPENKPSPPQPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKA 150
LE + R++ + K K +PP PE + + +E G + F +LGL
Sbjct: 146 LERLRQRQMRDAVKLQ----KLNPPMPEPRVM------KETVPG-----LVRFNDLGLSD 190
Query: 151 EMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALL 210
E+++AV+++GL P+E+Q +GIP VL G++VV++S +GSG+TLAYLLP+VQ LRRDEA
Sbjct: 191 EVMEAVKELGLMEPTEVQAIGIPTVLAGENVVMASHTGSGKTLAYLLPIVQALRRDEAAS 250
Query: 211 P--MKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIG 268
+ PRA+VLC T E A+Q F +AK + H AR ++M GG K ED N I
Sbjct: 251 GKFTRARRPRAVVLCPTRELAEQVFRVAKSLCHHARFRAAMVGGGSRMKTQEDSLNKAID 310
Query: 269 MLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQ 328
+++ATP +L HIE N++ D++YVVLDEADT+FD+GFG E+ K LNPL++ + + G+
Sbjct: 311 LIVATPGRLLMHIEQGNMAYGDLKYVVLDEADTMFDKGFGVEVRKFLNPLRNRSRQPEGE 370
Query: 329 GFQTILVTAAIAE 341
FQT+LVTA I +
Sbjct: 371 PFQTVLVTATITK 383
>gi|4538903|emb|CAB39640.1| putative protein [Arabidopsis thaliana]
gi|7267668|emb|CAB78096.1| putative protein [Arabidopsis thaliana]
Length = 496
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 103/211 (48%), Positives = 140/211 (66%), Gaps = 10/211 (4%)
Query: 116 QPEQQQLSNIASEREKSS--GSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIP 173
+P QQ+ S++ E+SS + ++V +FQELGL E++ A++++ + VP+EIQC+GIP
Sbjct: 85 KPPQQRPSSVVGVEEESSIRKKSKKLVENFQELGLSEEVMGALQELNIEVPTEIQCIGIP 144
Query: 174 AVLNGKSVVLSSGSGSGRTLAYLLPLVQML----RRDEALL--PMKPMHPRAIVLCTTEE 227
AV+ KSVVL S +GSG+TLAYLLP+VQ+L R DEA L KP PR +VLC T E
Sbjct: 145 AVMERKSVVLGSHTGSGKTLAYLLPIVQVLSELMREDEANLGKKTKPRRPRTVVLCPTRE 204
Query: 228 SADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVS 287
++Q + H AR S + +GG + ED N I M++ TP +LQHIE+ N+
Sbjct: 205 LSEQVCLHQDY--HHARFRSILVSGGSRIRPQEDSLNNAIDMVVGTPGRILQHIEEGNMV 262
Query: 288 CDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
DI Y+VLDEADT+FDRGFGPEI K L PL
Sbjct: 263 YGDIAYLVLDEADTMFDRGFGPEIRKFLAPL 293
>gi|302766713|ref|XP_002966777.1| hypothetical protein SELMODRAFT_86079 [Selaginella moellendorffii]
gi|300166197|gb|EFJ32804.1| hypothetical protein SELMODRAFT_86079 [Selaginella moellendorffii]
Length = 464
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 101/221 (45%), Positives = 147/221 (66%), Gaps = 14/221 (6%)
Query: 127 SEREKSSGSNAEV-VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSS 185
ER S AEV SF ELGL E+ A+E++ L P+E+Q + IPA+L+G++VV++S
Sbjct: 86 GERLDYEDSLAEVSTQSFDELGLAEELRGAIEELDLKEPTEVQRMAIPAILDGENVVVAS 145
Query: 186 GSGSGRTLAYLLPLVQM-----LRRDE--ALLPMKPMHPRAIVLCTTEESADQG--FHMA 236
+GSG+TLAY+LPLVQ+ LR+DE + ++ PRA+VLC T E +Q F +
Sbjct: 146 HTGSGKTLAYMLPLVQVYFIPCLRKDEIESGRTVRARKPRALVLCPTRELTEQVLIFFYS 205
Query: 237 KFI---SHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRY 293
+ + SH AR S+M +GG + D N + M++ TP +L H+E+ N++ DI+Y
Sbjct: 206 RSLQKHSHHARFRSAMISGGFRPRPQADALNGALDMVVGTPGRLLMHVEEGNLAFGDIKY 265
Query: 294 VVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTIL 334
VV+DEADT+FDRGFGPE+ KI++PL++ AL+ NG FQTIL
Sbjct: 266 VVIDEADTMFDRGFGPELKKIIDPLRNRALR-NGSDFQTIL 305
>gi|302792411|ref|XP_002977971.1| hypothetical protein SELMODRAFT_176623 [Selaginella moellendorffii]
gi|300153992|gb|EFJ20628.1| hypothetical protein SELMODRAFT_176623 [Selaginella moellendorffii]
Length = 591
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 98/215 (45%), Positives = 144/215 (66%), Gaps = 16/215 (7%)
Query: 135 SNAEV-VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTL 193
S AEV SF ELGL E+ A+E++ L P+E+Q + IPA+L+G++VV++S +GSG+TL
Sbjct: 94 SLAEVSTQSFDELGLAEELRGAIEELDLKEPTEVQRMAIPAILDGENVVVASHTGSGKTL 153
Query: 194 AYLLPLVQM-----LRRDE--ALLPMKPMHPRAIVLCTTEESADQG--FHMAKFI----- 239
AY+LPLVQ+ LR+DE + ++ PRA+VLC T E +Q F ++ +
Sbjct: 154 AYMLPLVQVYFIPCLRKDEIESGRTVRARKPRALVLCPTRELTEQVLIFFYSRSLQKHSF 213
Query: 240 SHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 299
H AR S+M +GG + D N + M++ TP +L H+E+ N++ DI+YVV+DEA
Sbjct: 214 CHHARFRSAMISGGFRPRPQADALNGALDMVVGTPGRLLMHVEEGNLAFGDIKYVVIDEA 273
Query: 300 DTLFDRGFGPEISKILNPLKDSALKSNGQGFQTIL 334
DT+FDRGFGPE+ KI++PL++ AL+ NG FQTIL
Sbjct: 274 DTMFDRGFGPELKKIIDPLRNRALR-NGSDFQTIL 307
>gi|358346271|ref|XP_003637193.1| ATP-dependent RNA helicase [Medicago truncatula]
gi|355503128|gb|AES84331.1| ATP-dependent RNA helicase [Medicago truncatula]
Length = 410
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 96/248 (38%), Positives = 148/248 (59%), Gaps = 22/248 (8%)
Query: 85 EKDSFILENFKLRKLNGSAKTNNPENKPSPPQPEQQQLSNIASEREKSSGSNAEVVSSFQ 144
E+DS IL+ FK RKL GS +N+ N +++ + N + VV F+
Sbjct: 44 ERDSLILQQFKQRKLKGS--SNSVLNSSFDDTNDEKMIQN-------GLKNGTMVVGGFK 94
Query: 145 ELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ--- 201
ELG+ E+I+ +E++G FVPSEIQCV IP +L+GKS++LSS S RTLAYLLPL+Q
Sbjct: 95 ELGMSDELIEVMEEIGEFVPSEIQCVVIPTILDGKSLLLSSPSQHDRTLAYLLPLIQVDV 154
Query: 202 -MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE 260
MLRRD LL +PRA+VLC +EE +Q F+ A++I H A + S+ ++
Sbjct: 155 KMLRRDRELLGSNSKYPRAVVLCASEEKVEQCFNAARYIIHNAEVKSAKNRASSDTEK-- 212
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 320
SN+ IG++I TP E+LQ+IE+ + +++Y L+ T+ +R E++ I+ + +
Sbjct: 213 --SNSSIGLMIGTPYEILQYIEEGTIVPAELKY--LEFEMTILER---VEVAPIVEKMVE 265
Query: 321 SALKSNGQ 328
+ L+ G
Sbjct: 266 NKLRWFGH 273
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/102 (46%), Positives = 66/102 (64%), Gaps = 15/102 (14%)
Query: 295 VLDEADTLF-DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMEC 353
VLDEAD++ GPEI+KI+ PL+ + KS+ + QTI+ + IA
Sbjct: 323 VLDEADSMLGSSNIGPEINKIIRPLQHNESKSSVKRLQTIMAISTIA------------- 369
Query: 354 LERDNAGKVTAMLLEMDQAEVFDLTESQDALKKKVVEAMDSL 395
ERD+AG ++A+ +EM++ EVF LTES DALKKK+ EAM+SL
Sbjct: 370 -ERDHAGNISALSVEMEETEVFHLTESLDALKKKLEEAMNSL 410
>gi|302847799|ref|XP_002955433.1| hypothetical protein VOLCADRAFT_121417 [Volvox carteri f.
nagariensis]
gi|300259275|gb|EFJ43504.1| hypothetical protein VOLCADRAFT_121417 [Volvox carteri f.
nagariensis]
Length = 554
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 80/204 (39%), Positives = 127/204 (62%), Gaps = 6/204 (2%)
Query: 119 QQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNG 178
Q + N+A + + S SF++LGL+ ++ A+ MG+ P++IQ + IPA++N
Sbjct: 54 QLTVVNVARHNDWPAASAGP--RSFEQLGLQTPLVSALYGMGITEPTDIQSISIPALMNQ 111
Query: 179 -KSVVLSSGSGSGRTLAYLLPLVQMLRRDEA--LLPMKPMHPRAIVLCTTEESADQGFHM 235
+ L+S +GSG+TLAYLLPLVQ L+++EA +P +P PR +VL T E DQ +
Sbjct: 112 PGNYFLASHTGSGKTLAYLLPLVQALKQEEASGFVP-RPKRPRVLVLGPTRELTDQITGV 170
Query: 236 AKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 295
AK + H + ++ N S + PI +L+ATP+ L HI++ NV+ DIR++V
Sbjct: 171 AKKLCHTVKFRATCANADTSISQQARAMSGPIDVLVATPTRFLHHIKEGNVAYRDIRWLV 230
Query: 296 LDEADTLFDRGFGPEISKILNPLK 319
+DEADT+F +G+G E++ IL PL+
Sbjct: 231 VDEADTVFGQGWGEEVAAILAPLR 254
>gi|307105623|gb|EFN53871.1| hypothetical protein CHLNCDRAFT_58353 [Chlorella variabilis]
Length = 572
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 88/225 (39%), Positives = 138/225 (61%), Gaps = 13/225 (5%)
Query: 125 IASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSV--V 182
+A+ER++++ A +F +LG+ E+ A+ + G+ P+EIQ +PA+L ++ +
Sbjct: 50 VAAERQQAAAPPA----TFTQLGVSQELQAALAEKGISEPTEIQAAAVPALLQHRAADFL 105
Query: 183 LSSGSGSGRTLAYLLPLVQMLRRDEAL--LPMKPMHPRAIVLCTTEESADQGFHMAKFIS 240
L+S +GSG+TLAYLLPLVQ+L+ E L +P PRA+VL T E DQ +AK +S
Sbjct: 106 LASHTGSGKTLAYLLPLVQLLKEGEQLRGAAARPRRPRALVLGPTRELTDQILRVAKALS 165
Query: 241 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 300
H A+ SS+ NGG + P+ +L+ TP V+QH E ++ D+ VVLDEAD
Sbjct: 166 HTAKFRSSVVNGGGDMGGQREALERPLDVLVGTPQRVMQHAEKSHLYYGDVEVVVLDEAD 225
Query: 301 TLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 345
T+FDRGFGPE+ IL +A++ Q + +LV+A +++ +G
Sbjct: 226 TMFDRGFGPEVKAIL-----AAVRGKEQPARCVLVSATMSKAVGR 265
>gi|255074681|ref|XP_002501015.1| predicted protein [Micromonas sp. RCC299]
gi|226516278|gb|ACO62273.1| predicted protein, partial [Micromonas sp. RCC299]
Length = 403
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 131/217 (60%), Gaps = 7/217 (3%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF +LGL+ ++ A + MGL P++IQ IP +L+G +++S +GSG+TL YLLP++Q
Sbjct: 2 SFADLGLEEALVAATDSMGLTRPTDIQASAIPKILSGGHFLVASHTGSGKTLTYLLPVIQ 61
Query: 202 MLR--RDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
++ E KP PR +++ T E A+Q +AK +SH + S + GG
Sbjct: 62 QMKDAERETGARAKPKRPRVLIVGPTRELAEQVRSVAKAVSHHCKFSSELIIGGEKFATQ 121
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319
V + + +++ TP +++H E+ N+ ++ +V+LDEADTLF+ GFG E+ ++L P
Sbjct: 122 RQVLDRSLDVVVGTPGRIIKHCEEGNLFLSNVTHVILDEADTLFEAGFGDEVRRLLRP-- 179
Query: 320 DSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLER 356
L+ N +G Q I+V+A +AE + + +S+ + L+R
Sbjct: 180 ---LQKNPEGKQCIVVSATMAEKVAKMVSAELPDLQR 213
>gi|384253618|gb|EIE27092.1| DEAD-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 372
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 82/198 (41%), Positives = 118/198 (59%), Gaps = 13/198 (6%)
Query: 159 MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPR 218
M L P+EIQ VL+G V+L+S +GSG+TLAYLLPL + + KP PR
Sbjct: 1 MNLTSPTEIQVSKF--VLHGGDVLLASHTGSGKTLAYLLPL------KDGSVQAKPKRPR 52
Query: 219 AIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVL 278
AI+L T E DQ +AK ISH A+ S+ NGG S ++ P+ +L+ TP +++
Sbjct: 53 AIILGPTRELTDQILSVAKSISHKAKFRSACINGGGSMGQQKEALERPLDILVGTPQKLV 112
Query: 279 QHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAA 338
QH E ++ D++YVVLDEADT+FD+GFGPE+ +L P L+S Q TILV A
Sbjct: 113 QHAEKGHLYWGDVQYVVLDEADTMFDKGFGPEVRAVLGP-----LRSKPQPASTILVVAT 167
Query: 339 IAEMLGEQLSSLMECLER 356
+++ + + L + L+R
Sbjct: 168 LSQAVRKLLDTEFPNLKR 185
>gi|303275115|ref|XP_003056857.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461209|gb|EEH58502.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 533
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 71/204 (34%), Positives = 121/204 (59%), Gaps = 9/204 (4%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+E GL E+ A + +GL P++IQ V IP +L G + +++S +GSG+TL YLLP++
Sbjct: 95 SFRETGLDDELCAATDALGLETPTDIQSVAIPRILRGGNYMIASHTGSGKTLTYLLPIIH 154
Query: 202 MLRRDEALL----PMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
+RR+E +P PR +V+ T E A+Q +AK +SH AR S++ GG
Sbjct: 155 RIRREENATVGGGRARPKRPRVLVVSPTRELAEQVAGVAKSLSHHARFSSALVIGGDKFA 214
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNP 317
+ + +++ TP +++H+++ N+ + +VVLDEADTLF+ GFG +I +L P
Sbjct: 215 TQRTQLDRSLDVVVGTPGRLVKHVKEGNMYLGRVTHVVLDEADTLFEAGFGDDIRVLLGP 274
Query: 318 LKDSALKSNGQGFQTILVTAAIAE 341
L+ +G ++V+A +++
Sbjct: 275 LQKKP-----EGKSCVIVSATMSD 293
>gi|412989029|emb|CCO15620.1| predicted protein [Bathycoccus prasinos]
Length = 565
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 75/218 (34%), Positives = 133/218 (61%), Gaps = 13/218 (5%)
Query: 137 AEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLN-GKSVVLSSGSGSGRTLAY 195
A +++SF +L A++ +A+E + L P+EIQ + IP++ + G +V ++S +GSG+TLAY
Sbjct: 74 ALLMASFDDLS--ADVREALENLNLQSPTEIQSLAIPSIRDKGGNVCIASHTGSGKTLAY 131
Query: 196 LLPLVQMLRRDEALLP----MKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMEN 251
LLP++ L+R+E K PRA+++ T E A+Q F + K +SH A++ S +
Sbjct: 132 LLPILDALKREEIEADGDRLAKSRRPRALIVSPTRELAEQIFAVTKSLSHYAKVSSRLIL 191
Query: 252 GGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEI 311
GG +D AP+ +++ TP +++H E++++ ++VVLDEADTLF+ GFG ++
Sbjct: 192 GGRPFALQKDNLEAPVDVVVGTPGRLVKHCEEKSLFLGSCKFVVLDEADTLFEAGFGEDV 251
Query: 312 SKILNPLK------DSALKSNGQGFQTILVTAAIAEML 343
++L P+K D +S + +LV+A + + L
Sbjct: 252 ERLLRPVKNRNRGGDDGDESKKKSTTIVLVSATMPDRL 289
>gi|428185507|gb|EKX54359.1| hypothetical protein GUITHDRAFT_160645 [Guillardia theta CCMP2712]
Length = 589
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 72/180 (40%), Positives = 106/180 (58%), Gaps = 2/180 (1%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
S F +GL E+ A+ M + P+ IQ +P L G+SV+L + +GSG++LA+LLPLV
Sbjct: 97 SYFSTVGLIPELCAALGDMNINTPTAIQKESLPLSLAGESVLLCAETGSGKSLAFLLPLV 156
Query: 201 QMLRRDEALLPM--KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
L+ DE +L + +P PRA+V+ T E Q +AK +S A+ S GG SS
Sbjct: 157 NRLKVDEFVLGINARPKRPRAVVIVPTRELGSQILGVAKGLSKHAKFSSLGLLGGASSAM 216
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
P+ ++IATP +L HI D ++S D+R+VV DEADT+ +GFG E+ KI +
Sbjct: 217 QAKRLEQPVDLVIATPGRLLDHINDNHLSLGDVRFVVADEADTMAAQGFGEELRKIFEAI 276
>gi|452824296|gb|EME31300.1| ATP-dependent RNA helicase isoform 2 [Galdieria sulphuraria]
gi|452824297|gb|EME31301.1| ATP-dependent RNA helicase isoform 1 [Galdieria sulphuraria]
Length = 434
Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 113/191 (59%), Gaps = 4/191 (2%)
Query: 138 EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLL 197
+S F LG+ E++ ++++ G+ VP++IQ GIP +L G +V + + +GSG+TL +LL
Sbjct: 36 HTISPFASLGIGKELLASLDEQGIHVPTQIQNRGIPKILTGSNVFIGAETGSGKTLTFLL 95
Query: 198 PLVQMLRRDE--ALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS 255
PLV++L R E + P PR +V T E +Q +AK +SH AR + GG S
Sbjct: 96 PLVELLTRQEKSGRVERLPNRPRCLVFAPTRELGEQICKVAKKLSHRARFSCTEIVGGRS 155
Query: 256 SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDR-GFGPEISK- 313
KA E+ + P +++ATP L+H +N+ ++R++V DEAD LF R GF E +
Sbjct: 156 RKAEEESLSVPRDLVVATPGRFLEHNRKKNIMLSELRHIVFDEADYLFSRLGFREETKEF 215
Query: 314 ILNPLKDSALK 324
+LN + + LK
Sbjct: 216 LLNVERHAVLK 226
>gi|308804231|ref|XP_003079428.1| DEAD/DEAH box helicase, putative (ISS) [Ostreococcus tauri]
gi|116057883|emb|CAL54086.1| DEAD/DEAH box helicase, putative (ISS) [Ostreococcus tauri]
Length = 327
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 75/220 (34%), Positives = 126/220 (57%), Gaps = 11/220 (5%)
Query: 129 REKSSGSNAEVVSSFQELGLK-AEMIKAVEKMGLFVPSEIQCVGIPAVLN-GKSVVLSSG 186
R + +G +F E GL A +++A+ M + P+EIQ I + + G + ++S
Sbjct: 7 RGRHAGGTG-ATGTFAEAGLADAALMEALRAMEITEPTEIQYKAIGVIGSEGGNAFIASH 65
Query: 187 SGSGRTLAYLLPLVQMLRRDEALLP---MKPMHPRAIVLCTTEESADQGFHMAKFISHCA 243
+GSG+TLAYLLP++Q ++ EA KP P+ +V C T E A+Q +AK +SH A
Sbjct: 66 TGSGKTLAYLLPVIQRMKAAEAEAGERLAKPKRPKVVVTCPTRELAEQVAEVAKALSHVA 125
Query: 244 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 303
+ S + GG ++ ++P+ ++I TP +++H+E N+ + +VLDEADTLF
Sbjct: 126 KFSSCLVVGGKRLSTQKERLDSPVDVVIGTPGRLIKHVEQGNLFLGSVDAMVLDEADTLF 185
Query: 304 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEML 343
+ GFG E+ ++L P LK+ +G +LV+A + + L
Sbjct: 186 EAGFGDEVKRLLRP-----LKARPEGKTCVLVSATMPDRL 220
>gi|156087551|ref|XP_001611182.1| RNA helicase family protein [Babesia bovis]
gi|154798436|gb|EDO07614.1| RNA helicase family protein [Babesia bovis]
Length = 1100
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 124/223 (55%), Gaps = 27/223 (12%)
Query: 138 EVVSSFQELGLKAEMIKA---------------VEKMGL-FVPSEIQCVGIPAVLNGKS- 180
E ++ +Q LGLK ++ +A V++ L +P++IQ + I +L ++
Sbjct: 461 EYINDWQALGLKPQIAQAAVAWIRKTLLDAIGKVDQRNLEIIPTDIQTMAIRHLLKHRND 520
Query: 181 VVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 240
++++S + SG+TLAYLLP++Q L++ E L P PRA+VL E ADQ H+ K +
Sbjct: 521 ILIASNAASGKTLAYLLPIIQKLKKHETLKLRHPNAPRALVLVPNRELADQILHVVKGLG 580
Query: 241 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 300
H ++ S + +GGV D + +++ATP +L+ +V ++Y+VLDEAD
Sbjct: 581 HVVKISSEIISGGVYKGIQRDDMKRLVDVVVATPDRLLKM--KNHVKLHQLQYLVLDEAD 638
Query: 301 TLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEML 343
TL + GF P+++K+L+ +K Q FQ I V A+ +L
Sbjct: 639 TLLNEGFWPDVAKVLDLIK--------QPFQLIQVAASSKYLL 673
>gi|291230496|ref|XP_002735194.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 28-like
[Saccoglossus kowalevskii]
Length = 543
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/252 (30%), Positives = 134/252 (53%), Gaps = 20/252 (7%)
Query: 106 NNPENKPSPPQPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPS 165
NN P+ P+ Q SE +S V+SF + L +I + M + P+
Sbjct: 108 NNTRGNPAFPKKSDQ-----GSEHNES-------VTSFSDFHLHESLINGLASMEIEQPT 155
Query: 166 EIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPM--HPRAIVLC 223
+Q + IP V+ G +V+ ++ +GSG+TL+YLLP++ ++ + L MK PRA+VL
Sbjct: 156 NVQILTIPQVMRGHNVLCAAETGSGKTLSYLLPMLHQMKTETEKLGMKSAVGLPRALVLL 215
Query: 224 TTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIED 283
E A+Q +A+ +S L +++ GG K L S++P+ +++ATP +L+ +
Sbjct: 216 PARELAEQVLAVARRLSKFTELSANIVEGGRRHKTLHSTSDSPLDLMVATPGALLKCVTS 275
Query: 284 RNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKS---NGQGFQTILVTAAIA 340
+ D++RYVV+DE DT+ D F + LN LK +++ N + Q I++ A +
Sbjct: 276 GWIHMDNVRYVVIDEIDTMLDDSFR---TMTLNLLKRISIRHSADNTENAQVIMIGATMP 332
Query: 341 EMLGEQLSSLME 352
+ E L +++E
Sbjct: 333 KNAEEMLDNVVE 344
>gi|237747736|ref|ZP_04578216.1| ATP-dependent RNA helicase [Oxalobacter formigenes OXCC13]
gi|229379098|gb|EEO29189.1| ATP-dependent RNA helicase [Oxalobacter formigenes OXCC13]
Length = 469
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 107/179 (59%), Gaps = 5/179 (2%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ- 201
F++ GL +++KA++ +G P+ IQ IP VL GK V+ ++ +G+G+T Y LP++Q
Sbjct: 17 FEDFGLSPDILKALDDLGYVSPTPIQVQAIPLVLEGKDVMGAAQTGTGKTAGYSLPMLQS 76
Query: 202 -MLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
+ + ++ P + HP RA++L T E ADQ F K + + S++ GGV +
Sbjct: 77 LLFSANTSMSPAR--HPVRALILVPTRELADQVFEDVKRYAKYTPVKSAVVFGGVDISSQ 134
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ A + +LIATP +L H++ +NV+ + +VLDEAD + D GF P++ +I+N L
Sbjct: 135 TSILRAGVEILIATPGRLLDHVQQKNVNLSHTQILVLDEADRMLDMGFLPDLQRIVNLL 193
>gi|224369411|ref|YP_002603575.1| protein RhlE2 [Desulfobacterium autotrophicum HRM2]
gi|223692128|gb|ACN15411.1| RhlE2 [Desulfobacterium autotrophicum HRM2]
Length = 460
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/175 (39%), Positives = 102/175 (58%), Gaps = 5/175 (2%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ELGL+AE+IKAV+ G P+ IQ IPA+LNG+ ++ + +G+G+T A+ LP+V+
Sbjct: 2 SFEELGLRAELIKAVKTKGYIEPTPIQIRVIPAILNGQDILARAQTGTGKTDAFALPIVE 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
+L R +A HPRA+VL T E A Q K + L ++ GGV+ D
Sbjct: 62 ILARGKA----HRRHPRALVLTPTRELALQVGESIKAYARRVSLRCTVVYGGVNVNPQID 117
Query: 262 VSNAPIGMLIATPSEVLQHIE-DRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
+ +L+ATP +L +R+V I ++V DEAD + D GF EIS+IL
Sbjct: 118 RLKRGVDILVATPGRLLDLAAFNRDVKLSKIEFLVFDEADRMLDLGFSDEISQIL 172
>gi|156357705|ref|XP_001624354.1| predicted protein [Nematostella vectensis]
gi|156211127|gb|EDO32254.1| predicted protein [Nematostella vectensis]
Length = 349
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 107/187 (57%), Gaps = 2/187 (1%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
V SF LGL+ +++KA++ + + P+ IQ V IP +++ V+ ++ +GSG+TLAYL PL
Sbjct: 1 VYSFAGLGLRDDVLKALDALNIHQPTVIQMVTIPKIIHRHHVICAAQTGSGKTLAYLAPL 60
Query: 200 VQMLRRDEAL--LPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
V LR DE + + PRA ++ E A Q AK + H AR S GG K
Sbjct: 61 VHRLREDEERHGILARLKRPRACIVVPARELATQILKTAKSLCHHARFRSVGLIGGRKQK 120
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNP 317
+ D +P+ +L+ATP +L++ + + D+ ++V+DEADT+FD F +IL+
Sbjct: 121 WMRDDLESPVDLLVATPGTLLKYRQKDRLFFSDLTHLVIDEADTMFDASFKSLTMEILHT 180
Query: 318 LKDSALK 324
+ S L+
Sbjct: 181 INVSQLQ 187
>gi|332525460|ref|ZP_08401618.1| putative ATP-dependent RNA helicase 2 [Rubrivivax benzoatilyticus
JA2]
gi|332108727|gb|EGJ09951.1| putative ATP-dependent RNA helicase 2 [Rubrivivax benzoatilyticus
JA2]
Length = 483
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/177 (38%), Positives = 100/177 (56%), Gaps = 1/177 (0%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F L L ++++AV G + IQ IP VL+G+ V+ ++ +G+G+T A+ +PL+Q
Sbjct: 19 FDTLALDPKLLRAVADAGYRAMTPIQAKAIPIVLDGRDVMGAAQTGTGKTAAFTIPLLQK 78
Query: 203 LRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
+ R E HP RA+VL T E ADQ K + RL S++ GGV K
Sbjct: 79 MLRHENTSMSPARHPVRALVLAPTRELADQVAANVKTYAKHTRLRSAVVFGGVDMKPQTA 138
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
A + +LIATP +L HIE RN + + YVVLDEAD + D GF P++ +IL+ L
Sbjct: 139 ELKAGVEVLIATPGRLLDHIEARNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSFL 195
>gi|27366679|ref|NP_762206.1| ATP-dependent RNA helicase [Vibrio vulnificus CMCP6]
gi|37676391|ref|NP_936787.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
gi|320158571|ref|YP_004190949.1| ATP-dependent RNA helicase [Vibrio vulnificus MO6-24/O]
gi|27358245|gb|AAO07196.1| ATP-dependent RNA helicase [Vibrio vulnificus CMCP6]
gi|37200933|dbj|BAC96757.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
gi|319933883|gb|ADV88746.1| ATP-dependent RNA helicase [Vibrio vulnificus MO6-24/O]
Length = 418
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 101/177 (57%), Gaps = 1/177 (0%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
+ ++F ELGL + + + ++G P+ IQ IP +L G+ V+ ++ +G+G+T AY LP
Sbjct: 1 MTNTFIELGLDSSLSDHLSQLGFNTPTPIQQQAIPHLLQGRDVLAAAQTGTGKTAAYGLP 60
Query: 199 LVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
L+QML R ++ P HPRA++L T E A Q F K + L GG S +
Sbjct: 61 LIQMLSR-QSREETAPKHPRALILAPTRELAQQVFDNLKQYAQHTELAIVTVYGGTSIRV 119
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
++ + +LIATP +L H+ + S + ++ +VLDEAD + D GF P+I +I+
Sbjct: 120 QQEQLAKGVDILIATPGRLLDHLFTKKTSLNQLQMLVLDEADRMLDMGFLPDIQRIM 176
>gi|374288894|ref|YP_005035979.1| putative cold-shock DeaD-box protein A (ATP-dependent RNA helicase)
[Bacteriovorax marinus SJ]
gi|301167435|emb|CBW27017.1| putative cold-shock DeaD-box protein A (ATP-dependent RNA helicase)
[Bacteriovorax marinus SJ]
Length = 440
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 112/180 (62%), Gaps = 1/180 (0%)
Query: 137 AEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYL 196
++++ F++L ++++K ++ G P+ +Q GIP +L +S+ L +G+G+TL+Y
Sbjct: 12 GKLMAKFEDLLSNSDLLKYIQDQGFSAPTPVQQKGIPLLLKRESLSLLGKTGTGKTLSYA 71
Query: 197 LPLVQMLRRDEAL-LPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS 255
LPLV+ L+ DE+ + ++ PRA+V+ T+E Q F + K ISH A+L GG
Sbjct: 72 LPLVECLKEDESNNVQVQVGSPRALVILPTKELTSQVFQVFKGISHFAKLRVRQLLGGEK 131
Query: 256 SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
+ +++S++ I +L+ P ++Q +E + ++ D++Y++LDEADTL D GF +I K+
Sbjct: 132 GQKSKELSSSSIDILVTGPGRLVQMVEKKELNLLDVKYLILDEADTLLDMGFFKDIQKMW 191
>gi|388567718|ref|ZP_10154148.1| DEAD/DEAH box helicase domain protein [Hydrogenophaga sp. PBC]
gi|388265047|gb|EIK90607.1| DEAD/DEAH box helicase domain protein [Hydrogenophaga sp. PBC]
Length = 482
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 101/181 (55%), Gaps = 1/181 (0%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
+ SF EL L + KAV +MG + IQ IP VL G+ V+ ++ +G+G+T A+ LP
Sbjct: 1 MTQSFSELNLAPALAKAVAEMGYETMTPIQAQAIPQVLTGRDVMGAAQTGTGKTAAFSLP 60
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
L+Q L + E HP RA+VL T E ADQ K + +L S++ GG+ K
Sbjct: 61 LLQRLLKHENASTSPARHPVRALVLLPTRELADQVAEQVKLYAKYTQLRSTVVFGGMDMK 120
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNP 317
+ +L+ATP +L HIE +N + + YVVLDEAD + D GF P++ +IL+
Sbjct: 121 PQTLELKKGVEVLVATPGRLLDHIEAKNCVLNQVEYVVLDEADRMLDIGFLPDLQRILSY 180
Query: 318 L 318
L
Sbjct: 181 L 181
>gi|260223394|emb|CBA33917.1| Putative ATP-dependent RNA helicase rhlE [Curvibacter putative
symbiont of Hydra magnipapillata]
Length = 520
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 68/178 (38%), Positives = 100/178 (56%), Gaps = 1/178 (0%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F +L L + +AV +MG + IQ IP VL GK V+ ++ +G+G+T A+ LPL+Q
Sbjct: 23 AFAQLQLADPLARAVAEMGYTTMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFALPLLQ 82
Query: 202 MLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE 260
L + E HP RA+VL T E ADQ K + L S++ GG+ K
Sbjct: 83 RLMKHENASTSPARHPVRALVLLPTRELADQVAQQVKLYAKYTNLRSAVVFGGMDMKPQT 142
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
A + +L+ATP +L HIE +N + + YVVLDEAD + D GF P++ +IL+ L
Sbjct: 143 LELKAGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYL 200
>gi|332289731|ref|YP_004420583.1| ATP-dependent RNA helicase SrmB [Gallibacterium anatis UMN179]
gi|330432627|gb|AEC17686.1| ATP-dependent RNA helicase SrmB [Gallibacterium anatis UMN179]
Length = 447
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 124/229 (54%), Gaps = 23/229 (10%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+S+F E L +++KA+ K GL P+ IQ IPA ++G V+ SS +G+G+T+A+LLP
Sbjct: 3 ISNFDEFDLDPQLLKALAKKGLNRPTAIQIEAIPAAMDGHDVLGSSPTGTGKTIAFLLPA 62
Query: 200 VQML----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS 255
+Q L RR KP PR +VL T E A Q A+ ++ L + GGV+
Sbjct: 63 IQHLLDFPRR-------KPGAPRVLVLTPTRELAMQVAEQAQQLAQFTSLSIATITGGVA 115
Query: 256 SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
+ ++ N M+IATP +LQ+I++ N C + ++ DEAD + GFG + +I
Sbjct: 116 YQNHGEIFNKNQDMVIATPGRLLQYIQEENFDCRAVEILIFDEADRMLQMGFGQDAERI- 174
Query: 316 NPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAGKVTA 364
A ++ + QT+L +A + GE+L+S + L DN +V A
Sbjct: 175 ------AAETRWRK-QTMLFSATLE---GEELNSFAQRL-LDNPVEVNA 212
>gi|56477991|ref|YP_159580.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
gi|56314034|emb|CAI08679.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
Length = 491
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 67/179 (37%), Positives = 103/179 (57%), Gaps = 3/179 (1%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF +LGL E+++AV + G P+ IQ IP VL+G+ V+ + +G+G+T + LPL+Q
Sbjct: 2 SFADLGLIPELLRAVAESGYTTPTPIQQQAIPVVLSGRDVMGGAQTGTGKTAGFTLPLLQ 61
Query: 202 MLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA-L 259
L R + HP RA++L T E A Q F K S L S+ GGV K +
Sbjct: 62 RLARHASTSTSPARHPVRALILAPTRELAMQVFESVKTYSKYVPLRSTCIYGGVDMKPQI 121
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+D+ N I +++ATP +L H++ + + + +VLDEAD + D GF P+I +IL+ L
Sbjct: 122 QDLRNG-IEIVVATPGRLLDHVQQKTIQLGQVEMLVLDEADRMLDMGFIPDIRRILDLL 179
>gi|418528845|ref|ZP_13094787.1| hypothetical protein CTATCC11996_04137 [Comamonas testosteroni ATCC
11996]
gi|371454106|gb|EHN67116.1| hypothetical protein CTATCC11996_04137 [Comamonas testosteroni ATCC
11996]
Length = 473
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 71/184 (38%), Positives = 101/184 (54%), Gaps = 1/184 (0%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
+ SSF L L + +AV MG + IQ IP VL GK V+ ++ +G+G+T A+ LP
Sbjct: 1 MTSSFSNLHLAEPLARAVADMGYESMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLP 60
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
L+Q L R E HP RA+VL T E ADQ + +L S++ GG+ K
Sbjct: 61 LLQRLMRHENASASPARHPVRALVLLPTRELADQVAQQIALYAKHTKLRSTVVFGGMDMK 120
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNP 317
+ +L+ATP +L HIE +NV + + YVVLDEAD + D GF P++ +IL+
Sbjct: 121 PQTIELKKGVEVLVATPGRLLDHIEAKNVVLNQVEYVVLDEADRMLDIGFLPDLQRILSY 180
Query: 318 LKDS 321
L S
Sbjct: 181 LPKS 184
>gi|330812848|ref|XP_003291329.1| hypothetical protein DICPUDRAFT_155915 [Dictyostelium purpureum]
gi|325078509|gb|EGC32157.1| hypothetical protein DICPUDRAFT_155915 [Dictyostelium purpureum]
Length = 1031
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 118/204 (57%), Gaps = 15/204 (7%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
FQ +GL +++++ K G VP+ IQ IP +L G VV + +GSG+T A+++P+VQM
Sbjct: 221 FQSMGLNKLLLRSILKKGFNVPTPIQRRTIPLILEGNDVVGMARTGSGKTGAFVIPMVQM 280
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS-SKALED 261
L+ ++ + R+++L T E A Q F + K + L + + GG S + +D
Sbjct: 281 LQEHSTVVGV-----RSVILSPTRELAIQTFKVVKDFTQGTNLRTILIVGGDSMEEQYDD 335
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDS 321
++ P ++IATP ++ H+++ +S ++Y+V DEAD LF+ GF ++++IL+ L ++
Sbjct: 336 LARNP-DIIIATPGRLMHHLQETGMSLSKVKYIVFDEADRLFEMGFNEQLTEILSKLSEN 394
Query: 322 ALKSNGQGFQTILVTAAIAEMLGE 345
QT+L +A + +L E
Sbjct: 395 R--------QTLLFSATLPSLLVE 410
>gi|221065648|ref|ZP_03541753.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
gi|220710671|gb|EED66039.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
Length = 473
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 71/184 (38%), Positives = 101/184 (54%), Gaps = 1/184 (0%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
+ SSF L L + +AV MG + IQ IP VL GK V+ ++ +G+G+T A+ LP
Sbjct: 1 MTSSFSNLHLAEPLARAVADMGYESMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLP 60
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
L+Q L R E HP RA+VL T E ADQ + +L S++ GG+ K
Sbjct: 61 LLQRLMRHENASASPARHPVRALVLLPTRELADQVAQQIALYAKHTKLRSTVVFGGMDMK 120
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNP 317
+ +L+ATP +L HIE +NV + + YVVLDEAD + D GF P++ +IL+
Sbjct: 121 PQTLELKKGVEVLVATPGRLLDHIEAKNVVLNQVEYVVLDEADRMLDIGFLPDLQRILSY 180
Query: 318 LKDS 321
L S
Sbjct: 181 LPKS 184
>gi|121608317|ref|YP_996124.1| DEAD/DEAH box helicase domain-containing protein [Verminephrobacter
eiseniae EF01-2]
gi|121552957|gb|ABM57106.1| DEAD/DEAH box helicase domain protein [Verminephrobacter eiseniae
EF01-2]
Length = 486
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 68/181 (37%), Positives = 101/181 (55%), Gaps = 1/181 (0%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
+ SSF L L + +AV +MG + IQ IP VL G+ V+ ++ +G+G+T A+ LP
Sbjct: 1 MTSSFSNLMLAEPLARAVAEMGYTAMTPIQAQAIPVVLTGQDVMGAAQTGTGKTAAFSLP 60
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
L+Q L R E+ HP RA+VL T E ADQ + +L S++ GG+ K
Sbjct: 61 LLQRLLRHESSSASPARHPVRALVLLPTRELADQVARQIALYARHTKLRSTVVFGGIDMK 120
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNP 317
+ +L+ATP +L HIE +N + + YVVLDEAD + D GF P++ +IL+
Sbjct: 121 PQTLELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSY 180
Query: 318 L 318
L
Sbjct: 181 L 181
>gi|237745550|ref|ZP_04576030.1| ATP-dependent RNA helicase [Oxalobacter formigenes HOxBLS]
gi|229376901|gb|EEO26992.1| ATP-dependent RNA helicase [Oxalobacter formigenes HOxBLS]
Length = 470
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/254 (31%), Positives = 131/254 (51%), Gaps = 18/254 (7%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F + GL +E++KA++ +G P+ IQ IP +L GK V+ ++ +G+G+T Y LP++Q
Sbjct: 17 FGDFGLASEILKALDDLGYSSPTPIQSQAIPVILEGKDVMGAAQTGTGKTAGYSLPVLQS 76
Query: 203 LRRDEALLPMKPM-HP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE 260
L A M P HP RA++L T E ADQ + + + L +++ GGV
Sbjct: 77 LLY-YANASMSPARHPVRALILVPTRELADQVYEDVRKYAKYTSLRTAVVFGGVDMSGQT 135
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 320
+ A +LIATP +L HI+ +NV+ +VLDEAD + D GF P++ +I+N L
Sbjct: 136 GILRAGAEILIATPGRLLDHIQQKNVNLGQTGILVLDEADRMLDMGFLPDLQRIVNLLPK 195
Query: 321 SALKSNGQGFQTILVTAAIAEMLGEQLSSLMEC-----LERDN--AGKVTAMLLEMDQAE 373
Q +L +A + + + +S ++ + R N A VT + +D+A+
Sbjct: 196 KR--------QNLLFSATFSSEIRKLANSFLDRPVSVEVARQNATADNVTQTVYRIDEAD 247
Query: 374 VFDLTESQDALKKK 387
D E L K+
Sbjct: 248 KNDAVEYLLRLHKR 261
>gi|449664058|ref|XP_002155207.2| PREDICTED: DEAD-box ATP-dependent RNA helicase 39-like [Hydra
magnipapillata]
Length = 473
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/261 (30%), Positives = 125/261 (47%), Gaps = 21/261 (8%)
Query: 94 FKLRKLNGSAKTNNPENKPSPPQPEQQQLSNIASEREKSSGSNAEVV------------- 140
FKL + TN S + ++ L ++ + EK +EVV
Sbjct: 10 FKLMHMALQTTTN------SVAKSQKTALKQVSKKNEKLLDRGSEVVIKAKNINVHHGNN 63
Query: 141 -SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
S+F L L+++++ ++ + + P+ IQ +GIP VL K+V ++ +GSG+TL Y+ P+
Sbjct: 64 QSTFSTLNLRSDLLDGLQNIHITQPTIIQMLGIPLVLQKKNVFCAAQTGSGKTLVYVTPI 123
Query: 200 VQMLRRD-EALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
+Q L + EA + PR +VL T E A Q + K SH R S G K
Sbjct: 124 IQKLGNEVEAGFIGRLSRPRVLVLSPTRELASQILKVFKHFSHYCRFRSVGVIGQNQKKW 183
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+D + +++ TPS +L+ + ++ D+RYVV DEADTL D F S+ L L
Sbjct: 184 AKDYVKGLVDVVVGTPSTILKWNQKGLLNFSDVRYVVFDEADTLMDDNFRNTTSEFLKLL 243
Query: 319 KDSALKSNGQGFQTILVTAAI 339
+ NG Q IL A +
Sbjct: 244 DCESDSKNGTNIQFILTAATL 264
>gi|410630628|ref|ZP_11341316.1| ATP-dependent RNA helicase rhlE [Glaciecola arctica BSs20135]
gi|410149857|dbj|GAC18183.1| ATP-dependent RNA helicase rhlE [Glaciecola arctica BSs20135]
Length = 419
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 119/224 (53%), Gaps = 16/224 (7%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F++L L E+I AV +G P+ IQ + IP +NGK ++ S+ +G+G+T A+LLP+ Q
Sbjct: 2 FEQLELDDELIHAVTDLGYKEPTSIQSLVIPEAMNGKDILASAPTGTGKTAAFLLPVCQF 61
Query: 203 L----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA-RLDSSMENGGVSSK 257
L RR +P R ++L T E A Q F AK IS A + + GG++
Sbjct: 62 LLDYPRR-------QPGSTRILILTPTRELALQIFEQAKAISKYAPHITCGVITGGINYG 114
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNP 317
D+ + + +L+ATP + +HIE + C DI ++LDEAD + D GF P +++I
Sbjct: 115 TDRDLLESNLDILVATPGRLFEHIEKESFDCRDIECLILDEADRMLDMGFSPIVNQI--- 171
Query: 318 LKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAGK 361
++ + F L + IA E L+ +E LE D++ K
Sbjct: 172 AAEARWRKQTMLFSATLEGSGIARFSDELLNDPVE-LEADSSRK 214
>gi|347818470|ref|ZP_08871904.1| DEAD/DEAH box helicase domain-containing protein [Verminephrobacter
aporrectodeae subsp. tuberculatae At4]
Length = 486
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/181 (37%), Positives = 102/181 (56%), Gaps = 1/181 (0%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
+ SSF L L + +AV +MG + IQ IP VL+G+ V+ ++ +G+G+T A+ LP
Sbjct: 1 MTSSFSNLSLAEPLARAVAEMGYESMTPIQAQAIPVVLSGQDVMGAAQTGTGKTAAFSLP 60
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
L+Q L + E+ HP RA+VL T E ADQ + RL S++ GG+ K
Sbjct: 61 LLQRLLKHESGSASPARHPVRALVLLPTRELADQVARQIALYAKHTRLRSTVVFGGMDMK 120
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNP 317
+ +L+ATP +L HIE +N + + YVVLDEAD + D GF P++ +IL+
Sbjct: 121 PQTIELKKGVEVLVATPGRLLDHIEAKNTVLNQVEYVVLDEADRMLDIGFLPDLQRILSY 180
Query: 318 L 318
L
Sbjct: 181 L 181
>gi|124265824|ref|YP_001019828.1| ATP-dependent RNA helicase 2 [Methylibium petroleiphilum PM1]
gi|124258599|gb|ABM93593.1| putative ATP-dependent RNA helicase 2 [Methylibium petroleiphilum
PM1]
Length = 494
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 110/199 (55%), Gaps = 9/199 (4%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F L L ++++AV + G + + IQ IP VL G+ V+ ++ +G+G+T A+ LPL+Q
Sbjct: 21 FDTLALDPKLLRAVAESGYLLMTPIQAKAIPLVLAGRDVMGAAQTGTGKTAAFSLPLLQK 80
Query: 203 LRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
+ + E+ HP RA+VL T E ADQ + K S +L +++ GG+ K
Sbjct: 81 MLKHESSSTSPARHPVRALVLAPTRELADQVANNVKTYSKHTQLRATVVFGGIDMKPQTA 140
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDS 321
+ +LIATP +L HIE +N S + YVVLDEAD + D GF P++ +IL+ L S
Sbjct: 141 ELKRGVEVLIATPGRLLDHIEAKNCSLSQVEYVVLDEADRMLDIGFLPDLQRILSYLPKS 200
Query: 322 ALKSNGQGFQTILVTAAIA 340
QT+L +A +
Sbjct: 201 R--------QTLLFSATFS 211
>gi|408419813|ref|YP_006761227.1| ATP-dependent RNA helicase RhlE2 [Desulfobacula toluolica Tol2]
gi|405107026|emb|CCK80523.1| RhlE2: predicted ATP-dependent RNA helicase [Desulfobacula
toluolica Tol2]
Length = 439
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 99/174 (56%), Gaps = 4/174 (2%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF ELGL+ E++KA + G P+ IQ IPA+LNG+ ++ + +G+G+T A+ LPL++
Sbjct: 2 SFDELGLRVELLKASKSKGYTAPTPIQTRAIPAILNGRDILARAQTGTGKTDAFALPLIE 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
+L R + +K +PRA+VL T E A Q K + + ++ GGV+ D
Sbjct: 62 ILSRKK----VKRRYPRALVLTPTRELALQVGESIKAYARRVSIRCTVVYGGVNITPQID 117
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
I +L+ATP +L R++ I ++V DEAD + D GF EIS+IL
Sbjct: 118 RLKRGIDILVATPGRLLDLASHRDLDLSRIEFLVFDEADRMLDLGFSEEISEIL 171
>gi|298711833|emb|CBJ32858.1| DEAD box helicase [Ectocarpus siliculosus]
Length = 488
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/224 (34%), Positives = 118/224 (52%), Gaps = 14/224 (6%)
Query: 134 GSNAEVVS--SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGR 191
G A+V+ F LGL +++ A+E+ G PS+IQ IP +LNG ++V ++ +GSG+
Sbjct: 9 GPEADVIEEMDFTGLGLLDDLVDAMEEFGFDSPSKIQRKAIPQILNGGNIVFAASTGSGK 68
Query: 192 TLAYLLPLVQMLRRDEALLPM------KPMHPRAIVLCTTEESADQGFHMAKFISHCARL 245
TLAYL+PL+Q L+ +EA + PRAIVL T E A Q +AK +S +
Sbjct: 69 TLAYLMPLIQQLKVEEAQAEEGGESIRQTKRPRAIVLVPTRELAMQVLEVAKRLSRSCKF 128
Query: 246 DSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDR 305
S GG + +++ TP +L+H E N YVV+DE DT+ +
Sbjct: 129 SSCGVVGGEDYGKQRQRLAGTVDIVVGTPGRLLKHHEAGNFFMSKANYVVVDEVDTMLTQ 188
Query: 306 GFGPEISKILNPLKDSALKSNGQGFQTILVTA----AIAEMLGE 345
GF +I K+ PL + + + F I VTA A+ ++LGE
Sbjct: 189 GFAADIEKLNRPLLANPNRRDMAQF--IFVTATLTKAVRKLLGE 230
>gi|413963140|ref|ZP_11402367.1| DEAD/DEAH box helicase [Burkholderia sp. SJ98]
gi|413928972|gb|EKS68260.1| DEAD/DEAH box helicase [Burkholderia sp. SJ98]
Length = 493
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 100/178 (56%), Gaps = 1/178 (0%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F + GL A+++KAV + G P+ IQ IP VL G+ V+ ++ +G+G+T ++ LP++Q
Sbjct: 18 TFDQFGLSADILKAVRESGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 77
Query: 202 MLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE 260
L HP RA++L T E ADQ + S L S++ GGV
Sbjct: 78 RLLPSANTSASPARHPVRALMLTPTRELADQVAANVQTYSKHTPLRSTVVFGGVDMNPQS 137
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
D + +LIATP +L H++ + V+ ++ +VLDEAD + D GF P++ +ILN L
Sbjct: 138 DALRRGVEILIATPGRLLDHVQQKTVNLGQVQMLVLDEADRMLDMGFLPDLQRILNLL 195
>gi|241767199|ref|ZP_04764950.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN]
gi|241362168|gb|EER58246.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN]
Length = 489
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/181 (37%), Positives = 101/181 (55%), Gaps = 1/181 (0%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
+ SSF L L + +AV +MG + IQ IP VL GK V+ ++ +G+G+T A+ LP
Sbjct: 1 MTSSFSNLSLAEPLARAVAEMGYESMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLP 60
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
L+Q L + E+ HP RA+VL T E ADQ + +L S++ GG+ K
Sbjct: 61 LLQRLLKHESSSTSPARHPVRALVLLPTRELADQVAQQIALYAKYTKLRSTVVFGGMDMK 120
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNP 317
+ +L+ATP +L HIE +N + + YVVLDEAD + D GF P++ +IL+
Sbjct: 121 PQTLELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSY 180
Query: 318 L 318
L
Sbjct: 181 L 181
>gi|319941925|ref|ZP_08016246.1| ATP-dependent helicase, superfamily II DNA and RNA helicase
[Sutterella wadsworthensis 3_1_45B]
gi|319804578|gb|EFW01448.1| ATP-dependent helicase, superfamily II DNA and RNA helicase
[Sutterella wadsworthensis 3_1_45B]
Length = 503
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/184 (36%), Positives = 106/184 (57%), Gaps = 9/184 (4%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+SSF + GL ++ A+E+MG P+ IQ IP VL G V+ ++ +G+G+T Y LPL
Sbjct: 27 MSSFDQFGLDPRILSAIERMGYTQPTPIQEKAIPVVLMGGDVMGAAQTGTGKTAGYGLPL 86
Query: 200 VQML--RRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCAR--LDSSMENGGV 254
+ + + + ++ P + HP RA++L T E ADQ + +CA L + + GGV
Sbjct: 87 IARILPKANTSMSPAR--HPVRALILAPTRELADQVSD--NLVKYCADTPLRAGVVYGGV 142
Query: 255 SSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+ D+ + +L ATP +L H++ R+V+ + VVLDEAD + D GF P+IS+I
Sbjct: 143 DIRPQADMLRRGVEILTATPGRLLDHVQQRSVNLSQVEIVVLDEADRMLDMGFLPDISRI 202
Query: 315 LNPL 318
L L
Sbjct: 203 LQLL 206
>gi|301623430|ref|XP_002941020.1| PREDICTED: probable ATP-dependent RNA helicase DDX28-like [Xenopus
(Silurana) tropicalis]
Length = 522
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 87/291 (29%), Positives = 148/291 (50%), Gaps = 14/291 (4%)
Query: 60 PVIR-PLSTKTTTPTEETQQRVPSK-PEKDSFILENFKLRKLNGSA--KTNNPENKPSPP 115
PVIR P ++ Q PS P + +L K R+LN A EN+P
Sbjct: 27 PVIRLPCRSQLRLDHLRKQPSAPSVLPTRTGKLLVLSKRRELNQYAAETIGRWENRPLVS 86
Query: 116 QPEQQQLS---NIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGI 172
Q + S + +++ G ++ +FQ LGL E++ + +G+ P+ +Q I
Sbjct: 87 QGWKHNASRGDHFIILQQQGHGPTPDISCNFQSLGLDEELVSILNSIGITSPTWVQIKSI 146
Query: 173 PAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQG 232
+L GK+++ ++ +GSG+TLAYLLP++ L+R + PR +VL + E A Q
Sbjct: 147 RNLLQGKNILSTAETGSGKTLAYLLPILHELKRSKR--SAHSSFPRCLVLVPSRELAGQI 204
Query: 233 FHMAKFISHCARLDSSME--NGGVSSKALED-VSNAPIGMLIATPSEVLQHIEDRNVSCD 289
+A+ + CA+L +++ GG+ A+E + PI +L+ATP + + ++ +S +
Sbjct: 205 VSVAQ--NFCAKLQLTVQFVGGGLGQTAVESKLGRGPIDILVATPGALWKALQKDIISLN 262
Query: 290 DIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIA 340
++ YVVLDE DTL D F IL +K ++ S+ QG + + A I
Sbjct: 263 ELCYVVLDEVDTLIDHTFLKLTGDILKHIKIASSPSDLQGSEKMAQLAVIG 313
>gi|118580947|ref|YP_902197.1| DEAD/DEAH box helicase [Pelobacter propionicus DSM 2379]
gi|118503657|gb|ABL00140.1| DEAD/DEAH box helicase domain protein [Pelobacter propionicus DSM
2379]
Length = 436
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 106/194 (54%), Gaps = 4/194 (2%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL+AE++ A+ G P+ IQ IPA+ G ++ + +G+G+T A+ LP+VQ
Sbjct: 2 SFETLGLRAELLSAIAAQGYTNPTPIQTGAIPAIFEGCDLLAGAQTGTGKTAAFALPIVQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
ML E + P K PRA+VL T E A Q + L S+M GGV+ +A +
Sbjct: 62 ML--GENIPPDKRRRPRALVLVPTRELAAQVSEQMNNYARRLSLRSTMIYGGVNIQAQIE 119
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN--PLK 319
+ + +++ATP +L H E V+ I+++VLDEAD + D GF I K+ P+K
Sbjct: 120 RLHRGVDIVVATPGRLLDHAERGTVNLSRIKFLVLDEADRMLDLGFIDAIHKVAQYLPVK 179
Query: 320 DSALKSNGQGFQTI 333
L + Q+I
Sbjct: 180 RQTLLFSATYSQSI 193
>gi|389873083|ref|YP_006380502.1| ATP-dependent RNA helicase [Advenella kashmirensis WT001]
gi|388538332|gb|AFK63520.1| ATP-dependent RNA helicase [Advenella kashmirensis WT001]
Length = 476
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 103/177 (58%), Gaps = 5/177 (2%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF E+GL +++KAV G P+ IQ +P +++G+ ++ ++ +G+G+T A+ LPL+
Sbjct: 17 SFTEVGLHPDLLKAVMASGYTKPTPIQEQAMPLIMDGRDIMGAAQTGTGKTAAFTLPLLH 76
Query: 202 MLR--RDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
L + ++ P + HP RA++L T E ADQ K SH + L ++ GGV A
Sbjct: 77 RLMPMANSSMSPAR--HPVRALILAPTRELADQVAESVKRYSHSSPLRVAVVFGGVDMNA 134
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
D +LIATP +L HIE +NVS + +VLDEAD + D GF P++ +I+
Sbjct: 135 QRDQLRKGCELLIATPGRLLDHIEQKNVSLSQVSVLVLDEADRMLDMGFLPDLERIV 191
>gi|377820266|ref|YP_004976637.1| DEAD/DEAH box helicase [Burkholderia sp. YI23]
gi|357935101|gb|AET88660.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. YI23]
Length = 496
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 100/178 (56%), Gaps = 1/178 (0%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F + GL A+++KAV + G P+ IQ IP VL G+ V+ ++ +G+G+T ++ LP++Q
Sbjct: 18 TFDQFGLAADILKAVRESGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 77
Query: 202 MLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE 260
L HP RA++L T E ADQ + S L S++ GGV
Sbjct: 78 RLLPSANTSASPARHPVRALMLTPTRELADQVAANVQTYSKHTPLRSTVVFGGVDMNPQS 137
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
D + +LIATP +L H++ + V+ ++ +VLDEAD + D GF P++ +ILN L
Sbjct: 138 DALRRGVEILIATPGRLLDHVQQKTVNLGQVQMLVLDEADRMLDMGFLPDLQRILNLL 195
>gi|145346658|ref|XP_001417802.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578030|gb|ABO96095.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 436
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 108/189 (57%), Gaps = 9/189 (4%)
Query: 159 MGLFVPSEIQCVGIPAVLNGK-SVVLSSGSGSGRTLAYLLPLVQMLRRDEALLP---MKP 214
M + P+EIQ I + G + ++S +GSG+TLAYLLP++Q ++ E KP
Sbjct: 1 MNIVEPTEIQTKAIDVIGRGAGNAFVASHTGSGKTLAYLLPVIQRMKAAEIAAGDRLAKP 60
Query: 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATP 274
P+ +V C T E A+Q +AK +SH A+ S + GG ++ ++ I ++I TP
Sbjct: 61 KRPKVVVACPTRELAEQVAEVAKALSHVAKFSSYLVVGGRRLGTQKERLDSAIDVVIGTP 120
Query: 275 SEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTIL 334
+++H++ N+ + +VLDEADTLF+ GFG E+ ++L P LK+ +G +L
Sbjct: 121 GRLIKHVDQGNLFLGSVDAMVLDEADTLFEAGFGDEVKRLLRP-----LKARPEGKTCVL 175
Query: 335 VTAAIAEML 343
V+A + + L
Sbjct: 176 VSATMPDRL 184
>gi|395003518|ref|ZP_10387653.1| DNA/RNA helicase, superfamily II [Acidovorax sp. CF316]
gi|394318531|gb|EJE54950.1| DNA/RNA helicase, superfamily II [Acidovorax sp. CF316]
Length = 499
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 101/181 (55%), Gaps = 1/181 (0%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
+ SSF L L + +AV +MG + IQ IP VL G+ V+ ++ +G+G+T A+ LP
Sbjct: 1 MTSSFSNLSLAEPLARAVAEMGYESMTPIQAQAIPVVLTGQDVMGAAQTGTGKTAAFSLP 60
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
L+Q L + E+ HP RA+VL T E ADQ + +L S++ GG+ K
Sbjct: 61 LLQRLLKHESSSTSPARHPVRALVLLPTRELADQVAQQIALYAKYTKLRSTVVFGGMDMK 120
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNP 317
+ +L+ATP +L HIE +N + + YVVLDEAD + D GF P++ +IL+
Sbjct: 121 PQTIELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSY 180
Query: 318 L 318
L
Sbjct: 181 L 181
>gi|449690217|ref|XP_002156431.2| PREDICTED: probable ATP-dependent RNA helicase DDX56-like [Hydra
magnipapillata]
Length = 534
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 70/209 (33%), Positives = 122/209 (58%), Gaps = 22/209 (10%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++S+F + + ++KA+ K+G PSEIQ IP L GK +++ + +GSG+T AYL+P
Sbjct: 1 MISNFTDFDIDDRLVKAISKLGWATPSEIQKRAIPPALEGKDIIIRAKTGSGKTAAYLIP 60
Query: 199 LVQ-MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMA-KFISHCARLDSSMENGGV-- 254
L+Q +L+ E+ P ++VL ++E Q + A S+C++L S ++ G
Sbjct: 61 LIQKILKNKESNKP----KTLSVVLVPSKELCKQSYRNALDLTSYCSKLVSVVDLGNSTV 116
Query: 255 -SSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDD-IRYVVLDEADTLFDRGFGPEIS 312
SS +L ++NA I LI+TPS++L HI ++ ++ D + Y++LDEAD +F G+ ++
Sbjct: 117 QSSSSL--INNADI--LISTPSKILAHINNKTINLKDFLDYLILDEADMMFSYGYEQDLK 172
Query: 313 KILNPLKDSALKSNGQGFQTILVTAAIAE 341
I L + +Q +LV+A I+E
Sbjct: 173 TITTSL--------PKIYQALLVSATISE 193
>gi|365097957|ref|ZP_09331724.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax sp.
NO-1]
gi|363413202|gb|EHL20410.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax sp.
NO-1]
Length = 505
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 101/181 (55%), Gaps = 1/181 (0%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
+ SSF L L + +AV +MG + IQ IP VL G+ V+ ++ +G+G+T A+ LP
Sbjct: 1 MTSSFSNLSLAEPLARAVAEMGYESMTPIQAQAIPVVLTGQDVMGAAQTGTGKTAAFSLP 60
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
L+Q L + E+ HP RA+VL T E ADQ + +L S++ GG+ K
Sbjct: 61 LLQRLLKHESSSTSPARHPVRALVLLPTRELADQVAQQIALYAKYTKLRSTVVFGGMDMK 120
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNP 317
+ +L+ATP +L HIE +N + + YVVLDEAD + D GF P++ +IL+
Sbjct: 121 PQTIELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSF 180
Query: 318 L 318
L
Sbjct: 181 L 181
>gi|239816848|ref|YP_002945758.1| DEAD/DEAH box helicase domain-containing protein [Variovorax
paradoxus S110]
gi|239803425|gb|ACS20492.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus S110]
Length = 486
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 101/181 (55%), Gaps = 1/181 (0%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
+ SSF L L + +AV +MG + IQ IP VL+G+ V+ ++ +G+G+T A+ LP
Sbjct: 1 MTSSFSNLSLAEPLARAVAEMGYETMTPIQEQAIPVVLSGQDVMGAAQTGTGKTAAFSLP 60
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
L+Q + + E HP RA+VL T E ADQ K + L S++ GG+ K
Sbjct: 61 LLQRMLKHENASTSPARHPVRALVLLPTRELADQVAQQVKLYAKYTNLRSTVVFGGIDMK 120
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNP 317
+ +L+ATP +L HIE +N + + YVVLDEAD + D GF P++ +IL+
Sbjct: 121 PQTLELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSY 180
Query: 318 L 318
L
Sbjct: 181 L 181
>gi|319795121|ref|YP_004156761.1| dead/deah box helicase domain-containing protein [Variovorax
paradoxus EPS]
gi|315597584|gb|ADU38650.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus EPS]
Length = 496
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 101/181 (55%), Gaps = 1/181 (0%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
+ SSF L L + +AV +MG + IQ IP VL+G+ V+ ++ +G+G+T A+ LP
Sbjct: 1 MTSSFSNLSLAEPLARAVAEMGYETMTPIQEQAIPVVLSGQDVMGAAQTGTGKTAAFSLP 60
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
L+Q + + E HP RA+VL T E ADQ K + L S++ GG+ K
Sbjct: 61 LLQRMLKHENASTSPARHPVRALVLLPTRELADQVAQQVKLYAKYTNLRSTVVFGGIDMK 120
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNP 317
+ +L+ATP +L HIE +N + + YVVLDEAD + D GF P++ +IL+
Sbjct: 121 PQTLELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSY 180
Query: 318 L 318
L
Sbjct: 181 L 181
>gi|334130724|ref|ZP_08504514.1| ATP-dependent RNA helicase [Methyloversatilis universalis FAM5]
gi|333444124|gb|EGK72080.1| ATP-dependent RNA helicase [Methyloversatilis universalis FAM5]
Length = 480
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 113/217 (52%), Gaps = 13/217 (5%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ELGL E+++AV G P+ IQ IP VL G+ V+ + +G+G+T ++ LPL+Q
Sbjct: 2 SFEELGLIPELLRAVADTGYTSPTPIQAQAIPVVLAGRDVMGGAQTGTGKTASFTLPLLQ 61
Query: 202 MLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE 260
L P HP RA+++C T E A Q K S L SS GGV KA
Sbjct: 62 RLAPHANSSPSPAKHPVRALIVCPTRELAMQVHESVKTYSKHLPLRSSCIYGGVDMKAQV 121
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 320
+++ATP +L H+E + V+ ++ +VLDEAD + D GF P+I +IL L
Sbjct: 122 AELREGREIVVATPGRLLDHVEGKTVNLGQVQMLVLDEADRMLDMGFIPDIKRILALLPT 181
Query: 321 SALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERD 357
Q++L +A + E++ L + + RD
Sbjct: 182 QR--------QSLLFSATFS----EEIKKLAQAMLRD 206
>gi|350544972|ref|ZP_08914491.1| ATP-dependent RNA helicase Bcep18194_A5658 [Candidatus Burkholderia
kirkii UZHbot1]
gi|350527233|emb|CCD38619.1| ATP-dependent RNA helicase Bcep18194_A5658 [Candidatus Burkholderia
kirkii UZHbot1]
Length = 493
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 101/178 (56%), Gaps = 1/178 (0%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F + GL ++++KAV + G P+ IQ IP VL+G+ V+ ++ +G+G+T ++ LP++Q
Sbjct: 18 TFDQFGLSSDILKAVRESGYTTPTPIQAQAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 77
Query: 202 MLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE 260
L HP RA++L T E ADQ + S L S++ GGV
Sbjct: 78 RLLPTANTSASPARHPVRALMLTPTRELADQVAANVQTYSKHTPLRSTVVFGGVDMNPQS 137
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
D + +LIATP +L H++ + V+ ++ +VLDEAD + D GF P++ +ILN L
Sbjct: 138 DALRRGVEILIATPGRLLDHVQQKTVNLGQVQMLVLDEADRMLDMGFLPDLQRILNLL 195
>gi|333916134|ref|YP_004489866.1| DEAD/DEAH box helicase domain-containing protein [Delftia sp.
Cs1-4]
gi|333746334|gb|AEF91511.1| DEAD/DEAH box helicase domain protein [Delftia sp. Cs1-4]
Length = 504
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 99/181 (54%), Gaps = 1/181 (0%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
+ SSF L L + +AV MG + IQ IP VL GK V+ ++ +G+G+T A+ LP
Sbjct: 1 MTSSFSNLQLAESLARAVADMGYESMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLP 60
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
L+Q L R E HP RA+VL T E ADQ + +L S++ GG+ K
Sbjct: 61 LLQRLMRHENTSASPARHPVRALVLLPTRELADQVAQQIAQYAKYTKLRSTVVFGGMDMK 120
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNP 317
+ +L+ATP +L HIE +N + + YVVLDEAD + D GF P++ +IL+
Sbjct: 121 PQTLELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSH 180
Query: 318 L 318
L
Sbjct: 181 L 181
>gi|160897598|ref|YP_001563180.1| DEAD/DEAH box helicase [Delftia acidovorans SPH-1]
gi|160363182|gb|ABX34795.1| DEAD/DEAH box helicase domain protein [Delftia acidovorans SPH-1]
Length = 504
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 99/181 (54%), Gaps = 1/181 (0%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
+ SSF L L + +AV MG + IQ IP VL GK V+ ++ +G+G+T A+ LP
Sbjct: 1 MTSSFSNLQLAESLARAVADMGYESMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLP 60
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
L+Q L R E HP RA+VL T E ADQ + +L S++ GG+ K
Sbjct: 61 LLQRLMRHENTSASPARHPVRALVLLPTRELADQVAQQIAQYAKYTKLRSTVVFGGMDMK 120
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNP 317
+ +L+ATP +L HIE +N + + YVVLDEAD + D GF P++ +IL+
Sbjct: 121 PQTLELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSH 180
Query: 318 L 318
L
Sbjct: 181 L 181
>gi|348681955|gb|EGZ21771.1| hypothetical protein PHYSODRAFT_350808 [Phytophthora sojae]
Length = 491
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 75/215 (34%), Positives = 112/215 (52%), Gaps = 20/215 (9%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SFQ+LG+ A ++ + +M + P+ IQ IPA+L V+ ++ +G+G+TLAYL+P+V+
Sbjct: 35 SFQDLGVDARIVAGLREMKITTPTGIQSKSIPAILERHDVLCAAQTGTGKTLAYLVPVVE 94
Query: 202 MLRRDEALLPMKPMH---------------PRAIVLCTTEESADQGFHMAKFISHCARLD 246
L R EA M+ H PRA+VL + E A Q +AK +SH A+
Sbjct: 95 QLLRKEA--AMQKEHEAKGLTGPAEVVLGRPRALVLLPSRELALQVASVAKQLSHSAKFA 152
Query: 247 SSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDR- 305
S G + + + ++I TP V + I + I VV+DEADTLFD
Sbjct: 153 SCTITSGERKSIQQRNTARRLDLIIGTPGRVAKCISKGDFFVSRIDTVVVDEADTLFDAK 212
Query: 306 -GFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 339
GF E+ +L P++ SA K N Q Q +L A I
Sbjct: 213 MGFRKELDAVLGPIQASAAKRN-QPLQMVLAAATI 246
>gi|303257750|ref|ZP_07343762.1| putative ATP-dependent RNA helicase RhlE [Burkholderiales bacterium
1_1_47]
gi|331001188|ref|ZP_08324815.1| ATP-dependent RNA helicase RhlE [Parasutterella excrementihominis
YIT 11859]
gi|302859720|gb|EFL82799.1| putative ATP-dependent RNA helicase RhlE [Burkholderiales bacterium
1_1_47]
gi|329569120|gb|EGG50912.1| ATP-dependent RNA helicase RhlE [Parasutterella excrementihominis
YIT 11859]
Length = 458
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 64/184 (34%), Positives = 101/184 (54%), Gaps = 13/184 (7%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F++ GL ++ A+++MG P+ IQC IP VL G+ V+ ++ +G+G+T ++ LP++Q
Sbjct: 6 NFEQFGLAPNLLSAIKRMGYTKPTAIQCKAIPVVLQGRDVMGAAQTGTGKTASFGLPVLQ 65
Query: 202 MLRRDEALLPMK------PMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGV 254
LLP+ HP R ++L T E ADQ + + + GGV
Sbjct: 66 ------KLLPLANTSTSPARHPVRVLILSPTRELADQTAEALSNYAADTPIRIGVVYGGV 119
Query: 255 SSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
K + + +LIATP +L H+E RN + + V+LDEAD + D GF P+IS+I
Sbjct: 120 DIKPQAEALRKGVEILIATPGRLLDHLEQRNTNLNQSGIVILDEADRMLDMGFLPDISRI 179
Query: 315 LNPL 318
LN L
Sbjct: 180 LNAL 183
>gi|71908923|ref|YP_286510.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal, partial
[Dechloromonas aromatica RCB]
gi|71848544|gb|AAZ48040.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Dechloromonas aromatica RCB]
Length = 507
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 112/200 (56%), Gaps = 8/200 (4%)
Query: 127 SEREKSSGSNAEVVS-------SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGK 179
SE +G NA +++ +F +LGL E+++AV G P+ IQ IP V++GK
Sbjct: 2 SEINTLAGENAIIIAADAVPEITFADLGLAPELLRAVLDEGYTKPTPIQAQAIPLVISGK 61
Query: 180 SVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKF 238
++ + +G+G+T A+ LP++Q + + P HP RA++L T E A Q F K
Sbjct: 62 DIMGGAQTGTGKTAAFTLPILQRILPFASSSPSPAKHPVRALILAPTRELAMQVFESVKT 121
Query: 239 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 298
S + + GGV + + +L+ATP +L H+E+++VS + ++ +VLDE
Sbjct: 122 YSKHTPIRAMCAYGGVDIRPQIAELKKGVEILVATPGRLLDHVENKSVSFNSVQALVLDE 181
Query: 299 ADTLFDRGFGPEISKILNPL 318
AD + D GF P++++ILN L
Sbjct: 182 ADRMLDMGFVPDVTRILNML 201
>gi|383937020|ref|ZP_09990435.1| ATP-dependent RNA helicase srmB homolog [Rheinheimera nanhaiensis
E407-8]
gi|383701930|dbj|GAB60526.1| ATP-dependent RNA helicase srmB homolog [Rheinheimera nanhaiensis
E407-8]
Length = 437
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 111/197 (56%), Gaps = 10/197 (5%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F +L L ++++V+ +G P++IQ IPAV+ G+ +++SS +GSG+TLAYLLP++Q
Sbjct: 3 FNDLALDPRLLRSVQHLGFVKPTDIQAEAIPAVMVGRDLIVSSQTGSGKTLAYLLPMMQR 62
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDV 262
L + P+ RA++L T E A Q + + L S++ GG + E +
Sbjct: 63 LLKSR---PLSKRDARALILAPTRELAKQVYAQLRLFVANTPLTSALIVGGENFNDQEKL 119
Query: 263 SNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSA 322
+++ATP + H+E ++V + + ++LDEAD + D GF P+++ ++N D
Sbjct: 120 LKREPDIIVATPGRFVDHLEHKSVFINGLEVLILDEADRMLDLGFMPQLT-VINKAADHR 178
Query: 323 LKSNGQGFQTILVTAAI 339
L+ QT++ +A +
Sbjct: 179 LR------QTLMFSATL 189
>gi|407712738|ref|YP_006833303.1| DEAD/DEAH box helicase [Burkholderia phenoliruptrix BR3459a]
gi|407234922|gb|AFT85121.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
phenoliruptrix BR3459a]
Length = 512
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 104/180 (57%), Gaps = 3/180 (1%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
++F + GL +++KAV++ G P+ IQ IP VL G+ V+ ++ +G+G+T ++ LP++
Sbjct: 37 ATFDQFGLAPDILKAVKESGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPII 96
Query: 201 QMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSSKA 258
Q L + HP RA++L T E ADQ ++ + H A L S++ GGV
Sbjct: 97 QRLLPHASTSASPARHPVRALILTPTRELADQVAANVQSYAKHTA-LRSAVVFGGVDMNP 155
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
D + +LIATP +L H++ + + ++ +VLDEAD + D GF P++ +ILN L
Sbjct: 156 QSDQLRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLL 215
>gi|443312790|ref|ZP_21042405.1| DNA/RNA helicase, superfamily II [Synechocystis sp. PCC 7509]
gi|442777246|gb|ELR87524.1| DNA/RNA helicase, superfamily II [Synechocystis sp. PCC 7509]
Length = 432
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 115/224 (51%), Gaps = 15/224 (6%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F LGL E++KA+ + G P+ IQ IPA+L GK V S+ +G+G+T + LPL+Q
Sbjct: 2 TFSHLGLSQELLKAISEQGYTQPTPIQKQAIPAILQGKDVFASAQTGTGKTAGFTLPLLQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
+L A PRA++L T E A Q + L S++ GGV+ +
Sbjct: 62 LLNNTSA--NKGDRAPRALILLPTRELAQQVGDSVRTYGKYLSLRSAVIYGGVAIRPQTQ 119
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDS 321
+ +++ATP +L H+E +N++ I +VLDE D + D GF +I KIL L S
Sbjct: 120 TLRQGVDIVVATPGRLLDHLEQKNLNLSQIEILVLDECDRMLDMGFIHDIRKILAKLPSS 179
Query: 322 ALKSNGQGFQTILVTA----AIAEMLGEQLSS--LMECLERDNA 359
+ QT++ +A I ++ LSS L+E R+ A
Sbjct: 180 SR-------QTLMFSATFSTTIRQLANTLLSSPTLIEVAARNTA 216
>gi|323525320|ref|YP_004227473.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp.
CCGE1001]
gi|323382322|gb|ADX54413.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1001]
Length = 486
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 104/180 (57%), Gaps = 3/180 (1%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
++F + GL +++KAV++ G P+ IQ IP VL G+ V+ ++ +G+G+T ++ LP++
Sbjct: 11 ATFDQFGLAPDILKAVKESGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPII 70
Query: 201 QMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSSKA 258
Q L + HP RA++L T E ADQ ++ + H A L S++ GGV
Sbjct: 71 QRLLPHASTSASPARHPVRALILTPTRELADQVAANVQSYAKHTA-LRSAVVFGGVDMNP 129
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
D + +LIATP +L H++ + + ++ +VLDEAD + D GF P++ +ILN L
Sbjct: 130 QSDQLRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLL 189
>gi|407798892|ref|ZP_11145795.1| RhlE [Oceaniovalibus guishaninsula JLT2003]
gi|407059240|gb|EKE45173.1| RhlE [Oceaniovalibus guishaninsula JLT2003]
Length = 476
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 113/201 (56%), Gaps = 12/201 (5%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++ F +L L ++++A+++ G P+ IQ IPA L+G+ V+ + +G+G+T ++ LP+
Sbjct: 1 MTKFSDLKLGPKVLQAIDEAGYTQPTPIQEAAIPAALDGRDVLGIAQTGTGKTASFTLPM 60
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
+ L R A K PR++VLC T E A Q S +L ++ GGVS K
Sbjct: 61 ITQLARGRA----KARMPRSLVLCPTRELAAQVAENFDTYSAHVKLTKALLIGGVSFKEQ 116
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319
+ + + + +LIATP +L H E + +D++ +V+DEAD + D GF P+I +I N L+
Sbjct: 117 DQLIDRGVDVLIATPGRLLDHHERGKLLLNDVKIMVVDEADRMLDMGFIPDIERIFNILR 176
Query: 320 DSALKSNGQGFQTILVTAAIA 340
+ +QT+ +A +A
Sbjct: 177 --------RPYQTLFFSATMA 189
>gi|83952321|ref|ZP_00961053.1| ATP-dependent RNA helicase RhlE [Roseovarius nubinhibens ISM]
gi|83837327|gb|EAP76624.1| ATP-dependent RNA helicase RhlE [Roseovarius nubinhibens ISM]
Length = 552
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 100/176 (56%), Gaps = 4/176 (2%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++ F EL L A+++KA+++ G P+ IQ IP L G+ V+ + +G+G+T ++ LP+
Sbjct: 1 MTKFSELNLNAKVLKAIDEAGYESPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPM 60
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
+ +L R A M PR++VLC T E A Q S +L ++ GGVS K
Sbjct: 61 LSLLARGRARARM----PRSLVLCPTRELAAQVAENFDTYSKHLKLTKALLIGGVSFKEQ 116
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
E + + + +LIATP +L H E + D++ +V+DEAD + D GF P+I +I
Sbjct: 117 EQIIDKGVDVLIATPGRLLDHFERGKLILSDVKVMVVDEADRMLDMGFIPDIERIF 172
>gi|397169877|ref|ZP_10493304.1| DEAD/DEAH box helicase [Alishewanella aestuarii B11]
gi|396088405|gb|EJI85988.1| DEAD/DEAH box helicase [Alishewanella aestuarii B11]
Length = 444
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 111/197 (56%), Gaps = 10/197 (5%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
FQ++GL ++++V+ +G P+EIQ IPAV+ G+ +++SS +GSG+TLAYLLP++Q
Sbjct: 3 FQDMGLDPRLLRSVQHLGFARPTEIQQEAIPAVMVGRDLLVSSKTGSGKTLAYLLPMMQR 62
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDV 262
L + AL RA++L T E A Q + + + + + GG + E +
Sbjct: 63 LLKSRAL---SKQDARALILTPTRELAKQVYAQLRLFVANTPVTAVLLVGGENFNDQEKL 119
Query: 263 SNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSA 322
+++ATP + H+E ++V + ++LDEAD + D GF P+++ I+N D
Sbjct: 120 LKRQPDIIVATPGRFVDHLEHKSVFLQGLEMLILDEADRMLDLGFLPQLT-IINKAADHR 178
Query: 323 LKSNGQGFQTILVTAAI 339
L+ QT+L +A +
Sbjct: 179 LR------QTLLFSATL 189
>gi|351730076|ref|ZP_08947767.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax
radicis N35]
Length = 498
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 101/181 (55%), Gaps = 1/181 (0%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
+ SSF L L + +AV +MG + IQ IP VL G+ V+ ++ +G+G+T A+ LP
Sbjct: 1 MTSSFSNLSLAEPLARAVAEMGYESMTPIQEQAIPVVLTGQDVMGAAQTGTGKTAAFSLP 60
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
L+Q L + E+ HP RA+VL T E ADQ + +L S++ GG+ K
Sbjct: 61 LLQRLLKHESSSTSPARHPVRALVLLPTRELADQVAQQIALYAKYTKLRSTVVFGGMDMK 120
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNP 317
+ +L+ATP +L HIE +N + + YVVLDEAD + D GF P++ +IL+
Sbjct: 121 PQTIELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSY 180
Query: 318 L 318
L
Sbjct: 181 L 181
>gi|398811913|ref|ZP_10570698.1| DNA/RNA helicase, superfamily II [Variovorax sp. CF313]
gi|398079456|gb|EJL70309.1| DNA/RNA helicase, superfamily II [Variovorax sp. CF313]
Length = 487
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 101/181 (55%), Gaps = 1/181 (0%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
+ SSF L L + +AV +MG + IQ IP VL+G+ V+ ++ +G+G+T A+ LP
Sbjct: 1 MTSSFSNLMLAEPLARAVAEMGYETMTPIQEQAIPVVLSGQDVMGAAQTGTGKTAAFSLP 60
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
L+Q + + E HP RA+VL T E ADQ K + L S++ GG+ K
Sbjct: 61 LLQRMLKHENASTSPARHPVRALVLLPTRELADQVAQQVKLYAKYTNLRSTVVFGGIDMK 120
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNP 317
+ +L+ATP +L HIE +N + + YVVLDEAD + D GF P++ +IL+
Sbjct: 121 PQTLELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSY 180
Query: 318 L 318
L
Sbjct: 181 L 181
>gi|337278667|ref|YP_004618138.1| ATP-dependent RNA helicase [Ramlibacter tataouinensis TTB310]
gi|334729743|gb|AEG92119.1| Candidate ATP-dependent RNA helicase [Ramlibacter tataouinensis
TTB310]
Length = 486
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 98/181 (54%), Gaps = 1/181 (0%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
+ SF L L + +AV +MG + IQ IP VL G+ V+ ++ +G+G+T A+ LP
Sbjct: 8 MTDSFSNLSLAEPLARAVAEMGYETMTPIQAQAIPVVLTGRDVMGAAQTGTGKTAAFSLP 67
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
L+Q L + E HP RA+VL T E ADQ K + L S++ GG+ K
Sbjct: 68 LLQRLLKHENSSTSPARHPVRALVLLPTRELADQVAQQVKLYAKYTNLRSAVVFGGMDMK 127
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNP 317
+ +L+ATP +L HIE +N + YVVLDEAD + D GF P++ +IL+
Sbjct: 128 PQTLELKRGVEVLVATPGRLLDHIEAKNAVLGQVEYVVLDEADRMLDIGFLPDLQRILSY 187
Query: 318 L 318
L
Sbjct: 188 L 188
>gi|299066188|emb|CBJ37372.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum
CMR15]
Length = 481
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 105/179 (58%), Gaps = 3/179 (1%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F GL ++++A+ + G + IQ IP V+ G+ V+ ++ +G+G+T + LP++Q
Sbjct: 2 TFDTFGLHPDILRALAESGYTRATPIQAAAIPVVIAGRDVMGAAQTGTGKTAGFSLPIIQ 61
Query: 202 MLRRDEALLPMKPMHP-RAIVLCTTEESADQGF-HMAKFISHCARLDSSMENGGVSSKAL 259
L D + HP RA++L T E ADQ + ++AK+ H A L S++ GGV
Sbjct: 62 NLLPDASTSASPARHPVRALILTPTRELADQVYDNVAKYAKHTA-LRSAVVFGGVDMNPQ 120
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ + +L+ATP +L H++ R+V+ +R +VLDEAD + D GF P++ +I+N L
Sbjct: 121 TEQLRRGVEVLVATPGRLLDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIINLL 179
>gi|326315975|ref|YP_004233647.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax avenae
subsp. avenae ATCC 19860]
gi|323372811|gb|ADX45080.1| DEAD/DEAH box helicase domain protein [Acidovorax avenae subsp.
avenae ATCC 19860]
Length = 491
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 100/181 (55%), Gaps = 1/181 (0%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
+ SSF L L + +AV +MG + IQ IP VL G+ V+ ++ +G+G+T A+ LP
Sbjct: 1 MTSSFSNLSLAEPLARAVAEMGYTSMTPIQAEAIPVVLTGQDVMGAAQTGTGKTAAFSLP 60
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
L+Q L + E HP RA+VL T E ADQ + +L S++ GG+ K
Sbjct: 61 LLQRLLKHENSSTSPARHPVRALVLLPTRELADQVAQQIALYAKYTKLRSTVVFGGMDMK 120
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNP 317
+ +L+ATP +L HIE +N + + YVVLDEAD + D GF P++ +IL+
Sbjct: 121 PQTLELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSY 180
Query: 318 L 318
L
Sbjct: 181 L 181
>gi|428310822|ref|YP_007121799.1| DNA/RNA helicase [Microcoleus sp. PCC 7113]
gi|428252434|gb|AFZ18393.1| DNA/RNA helicase, superfamily II [Microcoleus sp. PCC 7113]
Length = 433
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 112/213 (52%), Gaps = 14/213 (6%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F+ LGL ++++AV G P+ IQ IPAVL GK V S+ +G+G+T + LPL+Q
Sbjct: 2 TFRNLGLSTDLLRAVADSGYTEPTPIQQQAIPAVLQGKDVFASAQTGTGKTAGFTLPLLQ 61
Query: 202 MLRRDEALLPMKPMH--PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
+L P K +H PRA++L T E ADQ K L S++ GGV KA
Sbjct: 62 LLNTTN---PNK-VHRTPRALILTPTRELADQVNDSVKTYGKYLSLRSAVVYGGVGIKAQ 117
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319
+ +L+ATP +L H+ + V + +VLDE D + D GF +I KIL L
Sbjct: 118 IQTLRRGVDILVATPGRLLDHVGQKTVDLSQVEILVLDECDRMLDMGFIRDIRKILAILP 177
Query: 320 DSALKSNGQGFQTILVTAAIAEMLGEQLSSLME 352
S QT++ +A ++ + + ++L++
Sbjct: 178 SSR--------QTLMFSATFSKPIQQLANTLLK 202
>gi|407940452|ref|YP_006856093.1| DEAD/DEAH box helicase [Acidovorax sp. KKS102]
gi|407898246|gb|AFU47455.1| DEAD/DEAH box helicase [Acidovorax sp. KKS102]
Length = 490
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 100/181 (55%), Gaps = 1/181 (0%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
+ SSF L L + +AV +MG + IQ IP VL G+ V+ ++ +G+G+T A+ LP
Sbjct: 1 MTSSFSNLSLAEPLARAVAEMGYESMTPIQAQAIPVVLTGQDVMGAAQTGTGKTAAFSLP 60
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
L+Q L + E HP RA+VL T E ADQ + +L S++ GG+ K
Sbjct: 61 LLQRLLKHENSSTSPARHPVRALVLLPTRELADQVAQQIALYAKHTKLRSTVVFGGMDMK 120
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNP 317
+ +L+ATP +L HIE +N + + YVVLDEAD + D GF P++ +IL+
Sbjct: 121 PQTIELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSY 180
Query: 318 L 318
L
Sbjct: 181 L 181
>gi|120609836|ref|YP_969514.1| DEAD/DEAH box helicase [Acidovorax citrulli AAC00-1]
gi|120588300|gb|ABM31740.1| DEAD/DEAH box helicase domain protein [Acidovorax citrulli AAC00-1]
Length = 489
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 100/181 (55%), Gaps = 1/181 (0%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
+ SSF L L + +AV +MG + IQ IP VL G+ V+ ++ +G+G+T A+ LP
Sbjct: 1 MTSSFSNLSLAEPLARAVAEMGYTSMTPIQAEAIPVVLTGQDVMGAAQTGTGKTAAFSLP 60
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
L+Q L + E HP RA+VL T E ADQ + +L S++ GG+ K
Sbjct: 61 LLQRLLKHENSSTSPARHPVRALVLLPTRELADQVAQQIALYAKYTKLRSTVVFGGMDMK 120
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNP 317
+ +L+ATP +L HIE +N + + YVVLDEAD + D GF P++ +IL+
Sbjct: 121 PQTLELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSY 180
Query: 318 L 318
L
Sbjct: 181 L 181
>gi|121606092|ref|YP_983421.1| DEAD/DEAH box helicase [Polaromonas naphthalenivorans CJ2]
gi|120595061|gb|ABM38500.1| DEAD/DEAH box helicase domain protein [Polaromonas
naphthalenivorans CJ2]
Length = 487
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 100/181 (55%), Gaps = 1/181 (0%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
+ SSF L L + +AV +MG + IQ IP VL GK V+ ++ +G+G+T A+ LP
Sbjct: 1 MTSSFSNLSLAEPLARAVAEMGYETMTPIQEQAIPVVLQGKDVMGAAQTGTGKTAAFALP 60
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
L+Q + + E HP RA+VL T E A Q K + L+S++ GG+ K
Sbjct: 61 LLQRMMKHENASTSPARHPVRALVLLPTRELAVQVAEQVKLYAKYTNLNSAVVFGGMDMK 120
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNP 317
+ +L+ATP +L HIE +N + + YVVLDEAD + D GF P++ +IL+
Sbjct: 121 PQTLELKKGVEVLVATPGRLLDHIEAKNTVLNQVEYVVLDEADRMLDIGFLPDLQRILSY 180
Query: 318 L 318
L
Sbjct: 181 L 181
>gi|393762574|ref|ZP_10351201.1| DEAD/DEAH box helicase [Alishewanella agri BL06]
gi|392606809|gb|EIW89693.1| DEAD/DEAH box helicase [Alishewanella agri BL06]
Length = 444
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 111/197 (56%), Gaps = 10/197 (5%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
FQ++GL ++++V+ +G P+EIQ IPAV+ G+ +++SS +GSG+TLAYLLP++Q
Sbjct: 3 FQDMGLDPRLLRSVQHLGFARPTEIQQEAIPAVMVGRDLLVSSKTGSGKTLAYLLPMMQR 62
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDV 262
L + AL RA++L T E A Q + + + + + GG + E +
Sbjct: 63 LLKSRAL---SKQDARALILTPTRELAKQVYAQLRLFVANTPVTAVLLVGGENFNDQEKL 119
Query: 263 SNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSA 322
+++ATP + H+E ++V + ++LDEAD + D GF P+++ I+N D
Sbjct: 120 LKRQPDIIVATPGRFVDHLEHKSVFLQGLEMLILDEADRMLDLGFLPQLT-IINKAADHR 178
Query: 323 LKSNGQGFQTILVTAAI 339
L+ QT+L +A +
Sbjct: 179 LR------QTLLFSATL 189
>gi|73540602|ref|YP_295122.1| helicase [Ralstonia eutropha JMP134]
gi|72118015|gb|AAZ60278.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Ralstonia
eutropha JMP134]
Length = 537
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 106/183 (57%), Gaps = 15/183 (8%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F+ GL A +++A+ + G P+ IQ IP VL GK V+ ++ +G+G+T + LP++Q
Sbjct: 55 TFESFGLDARILRALSEQGYTKPTPIQAQAIPVVLLGKDVMGAAQTGTGKTAGFALPIIQ 114
Query: 202 MLRRDEALLPMK------PMHP-RAIVLCTTEESADQGF-HMAKFISHCARLDSSMENGG 253
L LPM HP RA++L T E ADQ + ++A++ H L S++ GG
Sbjct: 115 RL------LPMASASASPARHPVRALMLTPTRELADQVYDNVARYAKHTD-LRSTVVFGG 167
Query: 254 VSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISK 313
V D + +L+ATP +L H++ ++V+ ++ +VLDEAD + D GF P++ +
Sbjct: 168 VDMNPQTDALRRGVEILVATPGRLLDHVQQKSVNLSQVQMLVLDEADRMLDMGFLPDLQR 227
Query: 314 ILN 316
I+N
Sbjct: 228 IIN 230
>gi|372490012|ref|YP_005029577.1| DNA/RNA helicase [Dechlorosoma suillum PS]
gi|359356565|gb|AEV27736.1| DNA/RNA helicase, superfamily II [Dechlorosoma suillum PS]
Length = 474
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 67/177 (37%), Positives = 97/177 (54%), Gaps = 1/177 (0%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F ELGL E++KAV +MG + IQ IP VL GK + + +G+G+T A+ LPL+Q
Sbjct: 3 FDELGLAPEILKAVTEMGYAEATPIQQQAIPLVLQGKDLKACAQTGTGKTAAFTLPLIQR 62
Query: 203 LRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L + P HP RA++L T E A Q + K + S GGV K
Sbjct: 63 LLHLDTASPSPAKHPVRALMLAPTRELALQVYESVKSYTKYTHFRSICLFGGVDIKPQIA 122
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ ++ATP +L H+E ++VS + ++ +VLDEAD + D GF P+I +ILN L
Sbjct: 123 EMKKGVEFVVATPGRLLDHVEQKSVSFNQVQALVLDEADRMLDMGFIPDIQRILNML 179
>gi|254438460|ref|ZP_05051954.1| DEAD/DEAH box helicase domain protein [Octadecabacter antarcticus
307]
gi|198253906|gb|EDY78220.1| DEAD/DEAH box helicase domain protein [Octadecabacter antarcticus
307]
Length = 530
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 98/174 (56%), Gaps = 4/174 (2%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F +L L A+++KAVE+ G P+ IQ IP L G+ V+ + +G+G+T + LP++ M
Sbjct: 4 FSDLKLDAKVLKAVEETGYTTPTPIQAGAIPPALEGRDVLGIAQTGTGKTAGFTLPMITM 63
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDV 262
L+R A M PR++VL T E A Q + +L ++ GGVS K +++
Sbjct: 64 LKRGRARARM----PRSLVLAPTRELAAQVAENFDTYAKYTKLTKALLIGGVSFKEQDNL 119
Query: 263 SNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ + +LIATP +L H E + D++ +V+DEAD + D GF P+I +I
Sbjct: 120 IDRGVDVLIATPGRLLDHFERGKLILSDVKIMVVDEADRMLDMGFIPDIERIFG 173
>gi|417841786|ref|ZP_12487886.1| ATP-dependent RNA helicase srmB [Haemophilus haemolyticus M19501]
gi|341948555|gb|EGT75180.1| ATP-dependent RNA helicase srmB [Haemophilus haemolyticus M19501]
Length = 439
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 99/179 (55%), Gaps = 11/179 (6%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+S F++ L E++KA+EK G P+ IQ IPA + + V+ S+ +G+G+T A+LLP
Sbjct: 3 LSQFEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEARDVLGSAPTGTGKTAAFLLPA 62
Query: 200 VQML----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS 255
+Q L RR KP PR +VL T E A Q A+ ++ L+ + GGV+
Sbjct: 63 LQHLLDYPRR-------KPGPPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVA 115
Query: 256 SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+ DV N +++ATP +LQ+I++ N C + ++ DEAD + GFG + KI
Sbjct: 116 YQNHGDVFNTNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKI 174
>gi|384918672|ref|ZP_10018741.1| ATP-dependent RNA helicase RhlE [Citreicella sp. 357]
gi|384467385|gb|EIE51861.1| ATP-dependent RNA helicase RhlE [Citreicella sp. 357]
Length = 487
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/259 (29%), Positives = 128/259 (49%), Gaps = 24/259 (9%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++ F +L L +++KA+E+ G P+ IQ IP L G+ V+ + +G+G+T ++ LP+
Sbjct: 1 MTKFSDLNLNPKVLKAIEEAGYETPTPIQAGAIPHALEGRDVLGIAQTGTGKTASFTLPM 60
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
+ L R A M PR++VLC T E A Q + +L ++ GGVS K
Sbjct: 61 ITSLARGRARARM----PRSLVLCPTRELAAQVAENFDTYAKYVKLTKALLIGGVSFKEQ 116
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI--LNP 317
E + + + +LIATP +L H E + D++ +V+DEAD + D GF P+I +I L P
Sbjct: 117 ETLIDKGVDVLIATPGRLLDHFERGKLILTDVKVMVVDEADRMLDMGFIPDIERIFSLTP 176
Query: 318 LKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAGKVTAMLLEMDQAEVF-- 375
QT+ +A +A + ++ + ER + + + Q VF
Sbjct: 177 FTR----------QTLFFSATMAPEIERITNTFLSNPERIEVARQASASETITQGAVFFK 226
Query: 376 ------DLTESQDALKKKV 388
+ TE +D L+K +
Sbjct: 227 ASRRDREATEKRDILRKLI 245
>gi|114764595|ref|ZP_01443799.1| ATP-dependent RNA helicase RhlE [Pelagibaca bermudensis HTCC2601]
gi|114542971|gb|EAU45991.1| ATP-dependent RNA helicase RhlE [Roseovarius sp. HTCC2601]
Length = 502
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/238 (30%), Positives = 119/238 (50%), Gaps = 16/238 (6%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++ F +L L +++KA+E+ G P+ IQ IP L GK V+ + +G+G+T ++ LP+
Sbjct: 1 MTKFSDLNLNPKVLKAIEEAGYETPTPIQAGAIPHALEGKDVLGIAQTGTGKTASFTLPM 60
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
+ L R A M PR++VLC T E A Q + +L ++ GGVS K
Sbjct: 61 ITSLARGRARARM----PRSLVLCPTRELAAQVAENFDTYAKYVKLTKALLIGGVSFKEQ 116
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI--LNP 317
E + + + +LIATP +L H E + D++ +V+DEAD + D GF P+I +I L P
Sbjct: 117 EQLIDKGVDVLIATPGRLLDHFERGKLILTDVKVMVVDEADRMLDMGFIPDIERIFSLTP 176
Query: 318 LKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAGKVTAMLLEMDQAEVF 375
QT+ +A +A + ++ + ER + ++Q VF
Sbjct: 177 FTR----------QTLFFSATMAPEIERITNTFLSNPERIEVARQATASETIEQGAVF 224
>gi|17546930|ref|NP_520332.1| ATP-dependent RNA helicase [Ralstonia solanacearum GMI1000]
gi|17429230|emb|CAD15918.1| probable atp-dependent rna helicase protein [Ralstonia solanacearum
GMI1000]
Length = 495
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 109/191 (57%), Gaps = 3/191 (1%)
Query: 130 EKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGS 189
E +S + + +F GL ++++A+ + G + IQ IP V+ G+ V+ ++ +G+
Sbjct: 4 ETTSAAPSSDPVTFDTFGLHPDILRALAESGYTRATPIQAAAIPVVIAGRDVMGAAQTGT 63
Query: 190 GRTLAYLLPLVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGF-HMAKFISHCARLDS 247
G+T + LP++Q L D HP RA++L T E ADQ + ++AK+ H A L S
Sbjct: 64 GKTAGFSLPIIQNLLPDANTSASPARHPVRALILTPTRELADQVYDNVAKYAKHTA-LRS 122
Query: 248 SMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGF 307
++ GGV + + +L+ATP +L H++ R+V+ +R +VLDEAD + D GF
Sbjct: 123 AVVFGGVDMNPQTEQLRRGVEVLVATPGRLLDHVQQRSVNLSQVRMLVLDEADRMLDMGF 182
Query: 308 GPEISKILNPL 318
P++ +I+N L
Sbjct: 183 LPDLQRIINLL 193
>gi|148827621|ref|YP_001292374.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae PittGG]
gi|148718863|gb|ABQ99990.1| ATP-dependent RNA helicase [Haemophilus influenzae PittGG]
Length = 439
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 99/179 (55%), Gaps = 11/179 (6%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+S F++ L E++KA+EK G P+ IQ IPA + + V+ S+ +G+G+T A+LLP
Sbjct: 3 LSQFEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEARDVLGSAPTGTGKTAAFLLPA 62
Query: 200 VQML----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS 255
+Q L RR KP PR +VL T E A Q A+ ++ L+ + GGV+
Sbjct: 63 LQHLLDYPRR-------KPGPPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVA 115
Query: 256 SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+ DV N +++ATP +LQ+I++ N C + ++ DEAD + GFG + KI
Sbjct: 116 YQNHGDVFNTNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKI 174
>gi|194290299|ref|YP_002006206.1| dead box ATP-dependent RNA helicase with p-loop hydrolase domain
[Cupriavidus taiwanensis LMG 19424]
gi|193224134|emb|CAQ70143.1| DEAD box ATP-dependent RNA helicase with P-loop hydrolase domain
[Cupriavidus taiwanensis LMG 19424]
Length = 511
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 106/185 (57%), Gaps = 15/185 (8%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
V +F GL A +++A+ + G P+ IQ IP VL GK V+ ++ +G+G+T + LP+
Sbjct: 29 VQTFDSFGLDARILRALSEQGYTSPTPIQAQAIPVVLLGKDVMGAAQTGTGKTAGFALPI 88
Query: 200 VQMLRRDEALLPMK------PMHP-RAIVLCTTEESADQGF-HMAKFISHCARLDSSMEN 251
+Q L LP+ HP RA++L T E ADQ + ++A++ H L S++
Sbjct: 89 IQRL------LPLANASASPARHPVRALMLTPTRELADQVYDNVARYAKHTD-LRSTVVF 141
Query: 252 GGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEI 311
GGV D + +L+ATP +L H++ ++V+ ++ +VLDEAD + D GF P++
Sbjct: 142 GGVDMNPQTDALRRGVEILVATPGRLLDHVQQKSVNLSQVQMLVLDEADRMLDMGFLPDL 201
Query: 312 SKILN 316
+I+N
Sbjct: 202 QRIIN 206
>gi|222055835|ref|YP_002538197.1| DEAD/DEAH box helicase [Geobacter daltonii FRC-32]
gi|221565124|gb|ACM21096.1| DEAD/DEAH box helicase domain protein [Geobacter daltonii FRC-32]
Length = 446
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 104/194 (53%), Gaps = 4/194 (2%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL+ E++ A+ G +P+ IQ IP + G ++ + +G+G+T A+ LP+VQ
Sbjct: 2 SFDSLGLRVELLTAIASQGYTMPTPIQTQAIPVIFEGCDLLAGAQTGTGKTAAFALPIVQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
ML E + P K PRA+VL T E A Q + L S+M GGV+ +A +
Sbjct: 62 ML--GENIPPEKRRRPRALVLVPTRELAAQVSEQMNNYARRLSLRSTMIYGGVNIQAQIE 119
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN--PLK 319
+ + +++ATP +L H E V+ I+++VLDEAD + D GF I K+ P+K
Sbjct: 120 RLHRGVDIVVATPGRLLDHAERGTVNLSRIKFLVLDEADRMLDLGFIDAIQKVAEYLPVK 179
Query: 320 DSALKSNGQGFQTI 333
L + Q+I
Sbjct: 180 RQTLLFSATYSQSI 193
>gi|145634582|ref|ZP_01790291.1| ATP-dependent RNA helicase [Haemophilus influenzae PittAA]
gi|229844418|ref|ZP_04464558.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 6P18H1]
gi|145268127|gb|EDK08122.1| ATP-dependent RNA helicase [Haemophilus influenzae PittAA]
gi|229812667|gb|EEP48356.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 6P18H1]
Length = 439
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 99/179 (55%), Gaps = 11/179 (6%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+S F++ L E++KA+EK G P+ IQ IPA + + V+ S+ +G+G+T A+LLP
Sbjct: 3 LSQFEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPA 62
Query: 200 VQML----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS 255
+Q L RR KP PR +VL T E A Q A+ ++ L+ + GGV+
Sbjct: 63 LQHLLDYPRR-------KPGSPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVA 115
Query: 256 SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+ DV N +++ATP +LQ+I++ N C + ++ DEAD + GFG + KI
Sbjct: 116 YQNHGDVFNTNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKI 174
>gi|285019480|ref|YP_003377191.1| ATP-dependent RNA helicase [Xanthomonas albilineans GPE PC73]
gi|283474698|emb|CBA17197.1| probable atp-dependent rna helicase protein [Xanthomonas
albilineans GPE PC73]
Length = 456
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 103/211 (48%), Gaps = 7/211 (3%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL +++A+ + G P+ IQ IP L G ++ + +G+G+T A+ LPL+Q
Sbjct: 2 SFESLGLAPFLLRALAEQGYETPTPIQSQAIPVALQGHDLMAGAQTGTGKTAAFGLPLLQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L + P PRA++L T E A Q + S R+ S+ GGV D
Sbjct: 62 HLGTSAQTVGSGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSATIYGGVGMGNQLD 121
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDS 321
+ +LIA P +L H+E R+V I +VLDEAD + D GF P I +IL L
Sbjct: 122 ALRRGVDLLIACPGRLLDHLERRSVDLSGIEILVLDEADRMLDMGFLPSIKRILTKLPK- 180
Query: 322 ALKSNGQGFQTILVTAAIAEMLGEQLSSLME 352
Q QT+L +A E + + M
Sbjct: 181 ------QNRQTLLFSATFEEGIKQLAREFMH 205
>gi|348028423|ref|YP_004871109.1| ATP-dependent RNA helicase SrmB [Glaciecola nitratireducens FR1064]
gi|347945766|gb|AEP29116.1| ATP-dependent RNA helicase SrmB [Glaciecola nitratireducens FR1064]
Length = 423
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 97/176 (55%), Gaps = 11/176 (6%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F +L L E+ +AV +MG P+ IQ + IP + GK ++ + +G+G+T A+LLP+ Q
Sbjct: 2 FAQLDLDDELCRAVAEMGYERPTSIQSLVIPHAMEGKDILADAPTGTGKTAAFLLPVCQY 61
Query: 203 L----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
L R+D++ RA+VL T E A+Q + A I+ L + GG++
Sbjct: 62 LLDYPRKDDS-------STRALVLVPTRELANQVYEQAVAITKFTHLTCGVITGGINYGT 114
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+ NA + +L+ATP + +HIE + C DI ++LDEAD + D GF + +I
Sbjct: 115 DRETLNAKVDILVATPGRLFEHIEQESFDCRDIESLILDEADRMLDMGFSSIVHQI 170
>gi|342903495|ref|ZP_08725306.1| ATP-dependent RNA helicase srmB [Haemophilus haemolyticus M21621]
gi|341955599|gb|EGT82055.1| ATP-dependent RNA helicase srmB [Haemophilus haemolyticus M21621]
Length = 441
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/222 (33%), Positives = 116/222 (52%), Gaps = 22/222 (9%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+S F++ L E++KA+EK G P+ IQ IPA + + V+ S+ +G+G+T A+LLP
Sbjct: 3 LSQFEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPA 62
Query: 200 VQML----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS 255
+Q L RR KP PR +VL T E A Q A+ ++ L+ + GGV+
Sbjct: 63 LQHLLDYPRR-------KPGPPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVA 115
Query: 256 SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
+ DV N +++ATP +LQ+I++ N C + ++ DEAD + GFG + KI
Sbjct: 116 YQNHGDVFNTNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKI- 174
Query: 316 NPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERD 357
A ++ + QT+L +A + GE L E L D
Sbjct: 175 ------AAETRWRK-QTLLFSATLE---GELLVDFAERLLND 206
>gi|445499097|ref|ZP_21465952.1| ATP-dependent RNA helicase RhlE [Janthinobacterium sp. HH01]
gi|444789092|gb|ELX10640.1| ATP-dependent RNA helicase RhlE [Janthinobacterium sp. HH01]
Length = 550
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 99/177 (55%), Gaps = 1/177 (0%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F + GL +++A+ G P+ IQ IP +L G+ V+ ++ +G+G+T + LP++QM
Sbjct: 67 FADFGLSPHILRALTDQGYVHPTPIQAQAIPVLLQGRDVMGAAQTGTGKTAGFALPIIQM 126
Query: 203 LRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L + HP RA++L T E A Q K + L S++ GG+ K
Sbjct: 127 LLAHASTSTSPARHPVRALILTPTRELAVQVAENVKAYAQHTPLRSTVVFGGMDMKGQTV 186
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ A + ++IATP +L H+E +N+S ++ +V+DEAD + D GF P++ +I+N L
Sbjct: 187 ILKAGVEIVIATPGRLLDHVEQKNISLGQVQMLVMDEADRMLDMGFLPDLQRIINLL 243
>gi|393775871|ref|ZP_10364176.1| atp-dependent rna helicase [Ralstonia sp. PBA]
gi|392717127|gb|EIZ04696.1| atp-dependent rna helicase [Ralstonia sp. PBA]
Length = 507
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 107/185 (57%), Gaps = 3/185 (1%)
Query: 136 NAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAY 195
A+ ++F GL A++++A+ + G V + IQ IP V+ G+ V+ ++ +G+G+T +
Sbjct: 4 TAQADTTFDSFGLHADILRAITEQGYRVATPIQAQAIPVVMQGRDVMGAAQTGTGKTAGF 63
Query: 196 LLPLVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGF-HMAKFISHCARLDSSMENGG 253
LP++Q L + HP RA++L T E ADQ + ++AK+ H A L S++ GG
Sbjct: 64 SLPIIQRLLPFASTSTSPARHPVRALMLTPTRELADQVYDNVAKYAKHTA-LRSTVVFGG 122
Query: 254 VSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISK 313
V + +L+ATP +L H++ + V+ ++ +VLDEAD + D GF P++ +
Sbjct: 123 VDMNPQTAELRRGVEILVATPGRLLDHVQQKTVNLSQVQMLVLDEADRMLDMGFLPDLQR 182
Query: 314 ILNPL 318
ILN L
Sbjct: 183 ILNLL 187
>gi|300703503|ref|YP_003745105.1| ATP-dependent RNA helicase, dead-box family [Ralstonia solanacearum
CFBP2957]
gi|299071166|emb|CBJ42480.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum
CFBP2957]
Length = 495
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 105/179 (58%), Gaps = 3/179 (1%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F GL ++++A+ + G P+ IQ IP V+ G+ V+ ++ +G+G+T + LP++Q
Sbjct: 16 TFDTFGLHPDILRALTESGYTRPTPIQAAAIPVVVGGRDVMGAAQTGTGKTAGFSLPIIQ 75
Query: 202 MLRRDEALLPMKPMHP-RAIVLCTTEESADQGF-HMAKFISHCARLDSSMENGGVSSKAL 259
L + HP RA++L T E ADQ + ++AK+ + A L S++ GGV
Sbjct: 76 NLLPEANTSASPARHPVRALILTPTRELADQVYDNVAKYAKYTA-LRSAVVFGGVDMNPQ 134
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ + +L+ATP +L H++ R+V+ +R +VLDEAD + D GF P++ +I+N L
Sbjct: 135 TEQLRRGVEILVATPGRLLDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIINLL 193
>gi|207743814|ref|YP_002260206.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609]
gi|421897757|ref|ZP_16328124.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2]
gi|206588963|emb|CAQ35925.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2]
gi|206595214|emb|CAQ62141.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609]
Length = 495
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 105/179 (58%), Gaps = 3/179 (1%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F GL ++++A+ + G P+ IQ IP V+ G+ V+ ++ +G+G+T + LP++Q
Sbjct: 16 TFDTFGLHPDILRALTESGYTRPTPIQAAAIPVVVGGRDVMGAAQTGTGKTAGFSLPIIQ 75
Query: 202 MLRRDEALLPMKPMHP-RAIVLCTTEESADQGF-HMAKFISHCARLDSSMENGGVSSKAL 259
L + HP RA++L T E ADQ + ++AK+ + A L S++ GGV
Sbjct: 76 NLLPEANTSASPARHPVRALILTPTRELADQVYDNVAKYAKYTA-LRSAVVFGGVDMNPQ 134
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ + +L+ATP +L H++ R+V+ +R +VLDEAD + D GF P++ +I+N L
Sbjct: 135 TEQLRRGVEILVATPGRLLDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIINLL 193
>gi|386332888|ref|YP_006029057.1| atp-dependent rna helicase protein [Ralstonia solanacearum Po82]
gi|334195335|gb|AEG68520.1| atp-dependent rna helicase protein [Ralstonia solanacearum Po82]
Length = 495
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 105/179 (58%), Gaps = 3/179 (1%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F GL ++++A+ + G P+ IQ IP V+ G+ V+ ++ +G+G+T + LP++Q
Sbjct: 16 TFDTFGLHPDILRALTESGYTRPTPIQAAAIPVVVGGRDVMGAAQTGTGKTAGFSLPIIQ 75
Query: 202 MLRRDEALLPMKPMHP-RAIVLCTTEESADQGF-HMAKFISHCARLDSSMENGGVSSKAL 259
L + HP RA++L T E ADQ + ++AK+ + A L S++ GGV
Sbjct: 76 NLLPEANTSASPARHPVRALILTPTRELADQVYDNVAKYAKYTA-LRSAVVFGGVDMNPQ 134
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ + +L+ATP +L H++ R+V+ +R +VLDEAD + D GF P++ +I+N L
Sbjct: 135 TEQLRRGVEILVATPGRLLDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIINLL 193
>gi|417839686|ref|ZP_12485859.1| ATP-dependent RNA helicase srmB [Haemophilus haemolyticus M19107]
gi|341952052|gb|EGT78595.1| ATP-dependent RNA helicase srmB [Haemophilus haemolyticus M19107]
Length = 441
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 99/179 (55%), Gaps = 11/179 (6%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+S F++ L E++KA+EK G P+ IQ IPA + + V+ S+ +G+G+T A+LLP
Sbjct: 3 LSQFEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPA 62
Query: 200 VQML----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS 255
+Q L RR KP PR +VL T E A Q A+ ++ L+ + GGV+
Sbjct: 63 LQHLLDYPRR-------KPGPPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVA 115
Query: 256 SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+ DV N +++ATP +LQ+I++ N C + ++ DEAD + GFG + KI
Sbjct: 116 YQNHGDVFNTNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKI 174
>gi|421891297|ref|ZP_16322106.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum
K60-1]
gi|378963340|emb|CCF98854.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum
K60-1]
Length = 495
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 104/177 (58%), Gaps = 3/177 (1%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F GL ++++A+ + G P+ IQ IP V+ G+ V+ ++ +G+G+T + LP++Q
Sbjct: 16 TFDTFGLHPDILRALTESGYTRPTPIQAAAIPVVVGGRDVMGAAQTGTGKTAGFSLPIIQ 75
Query: 202 MLRRDEALLPMKPMHP-RAIVLCTTEESADQGF-HMAKFISHCARLDSSMENGGVSSKAL 259
L + HP RA++L T E ADQ + ++AK+ + A L S++ GGV
Sbjct: 76 NLLPEANTSASPARHPVRALILTPTRELADQVYDNVAKYAKYTA-LRSAVVFGGVDMNPQ 134
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ + +L+ATP +L H++ R+V+ +R +VLDEAD + D GF P++ +I+N
Sbjct: 135 TEQLRRGVEILVATPGRLLDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIIN 191
>gi|319898057|ref|YP_004136254.1| ATP-dependent RNA helicase [Haemophilus influenzae F3031]
gi|317433563|emb|CBY81947.1| ATP-dependent RNA helicase [Haemophilus influenzae F3031]
Length = 439
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/222 (33%), Positives = 116/222 (52%), Gaps = 22/222 (9%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+S F++ L E++KA+EK G P+ IQ IPA + + V+ S+ +G+G+T A+LLP
Sbjct: 3 LSQFEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPA 62
Query: 200 VQML----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS 255
+Q L RR KP PR +VL T E A Q A+ ++ L+ + GGV+
Sbjct: 63 LQHLLDYPRR-------KPGPPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVA 115
Query: 256 SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
+ DV N +++ATP +LQ+I++ N C + ++ DEAD + GFG + KI
Sbjct: 116 YQNHGDVFNTNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKI- 174
Query: 316 NPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERD 357
A ++ + QT+L +A + GE L E L D
Sbjct: 175 ------AAETRWRK-QTLLFSATLE---GELLVDFAERLLND 206
>gi|339326719|ref|YP_004686412.1| ATP-dependent RNA helicase RhlE [Cupriavidus necator N-1]
gi|338166876|gb|AEI77931.1| ATP-dependent RNA helicase RhlE [Cupriavidus necator N-1]
Length = 520
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 107/187 (57%), Gaps = 15/187 (8%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
V +F GL A +++A+ + G P+ IQ IP VL GK ++ ++ +G+G+T + LP+
Sbjct: 37 VQTFDSFGLDARILRALSEQGYTTPTPIQAQAIPVVLIGKDMMGAAQTGTGKTAGFALPI 96
Query: 200 VQMLRRDEALLPMK------PMHP-RAIVLCTTEESADQGF-HMAKFISHCARLDSSMEN 251
+Q L LP+ HP RA++L T E ADQ + ++A++ H L S++
Sbjct: 97 IQRL------LPLANASASPARHPVRALMLTPTRELADQVYDNVARYAKHTD-LRSTVVF 149
Query: 252 GGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEI 311
GGV D + +L+ATP +L H++ ++V+ ++ +VLDEAD + D GF P++
Sbjct: 150 GGVDMNPQTDALRRGVEILVATPGRLLDHVQQKSVNLSQVQMLVLDEADRMLDMGFLPDL 209
Query: 312 SKILNPL 318
+I+N L
Sbjct: 210 QRIINLL 216
>gi|113868675|ref|YP_727164.1| ATP-dependent helicase [Ralstonia eutropha H16]
gi|113527451|emb|CAJ93796.1| ATP-dependent helicase, superfamily II DNA and RNA helicase
[Ralstonia eutropha H16]
Length = 520
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 107/187 (57%), Gaps = 15/187 (8%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
V +F GL A +++A+ + G P+ IQ IP VL GK ++ ++ +G+G+T + LP+
Sbjct: 37 VQTFDSFGLDARILRALSEQGYTTPTPIQAQAIPVVLIGKDMMGAAQTGTGKTAGFALPI 96
Query: 200 VQMLRRDEALLPMK------PMHP-RAIVLCTTEESADQGF-HMAKFISHCARLDSSMEN 251
+Q L LP+ HP RA++L T E ADQ + ++A++ H L S++
Sbjct: 97 IQRL------LPLANASASPARHPVRALMLTPTRELADQVYDNVARYAKHTD-LRSTVVF 149
Query: 252 GGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEI 311
GGV D + +L+ATP +L H++ ++V+ ++ +VLDEAD + D GF P++
Sbjct: 150 GGVDMNPQTDALRRGVEILVATPGRLLDHVQQKSVNLSQVQMLVLDEADRMLDMGFLPDL 209
Query: 312 SKILNPL 318
+I+N L
Sbjct: 210 QRIINLL 216
>gi|148825298|ref|YP_001290051.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae PittEE]
gi|148715458|gb|ABQ97668.1| ATP-dependent RNA helicase [Haemophilus influenzae PittEE]
Length = 439
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 99/179 (55%), Gaps = 11/179 (6%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+S F++ L E++KA+EK G P+ IQ IPA + + V+ S+ +G+G+T A+LLP
Sbjct: 3 LSQFEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPA 62
Query: 200 VQML----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS 255
+Q L RR KP PR +VL T E A Q A+ ++ L+ + GGV+
Sbjct: 63 LQHLLDYPRR-------KPGPPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVA 115
Query: 256 SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+ DV N +++ATP +LQ+I++ N C + ++ DEAD + GFG + KI
Sbjct: 116 YQNHGDVFNTNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKI 174
>gi|380513114|ref|ZP_09856521.1| ATP-dependent RNA helicase, partial [Xanthomonas sacchari NCPPB
4393]
Length = 393
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/200 (35%), Positives = 100/200 (50%), Gaps = 7/200 (3%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL +++A+ + G P+ IQ IP L G ++ + +G+G+T A+ LPL+Q
Sbjct: 2 SFESLGLAPFLLRALAEQGYETPTPIQAQAIPVALEGHDLMAGAQTGTGKTAAFGLPLLQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L + P PRA+VL T E A Q + S R+ S+ GGV D
Sbjct: 62 HLGTSPQTVGAGPRKPRALVLTPTRELATQVHDSLRGYSKYLRIPSATIYGGVGMGNQLD 121
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDS 321
+ +LIA P +L H+E R+V I +VLDEAD + D GF P I +IL L
Sbjct: 122 ALRRGVDLLIACPGRLLDHLERRSVDLSGIEILVLDEADRMLDMGFLPSIKRILAKLPR- 180
Query: 322 ALKSNGQGFQTILVTAAIAE 341
Q QT+L +A E
Sbjct: 181 ------QNRQTLLFSATFEE 194
>gi|417843573|ref|ZP_12489646.1| ATP-dependent RNA helicase srmB [Haemophilus haemolyticus M21127]
gi|419838690|ref|ZP_14362111.1| DEAD/DEAH box helicase [Haemophilus haemolyticus HK386]
gi|341949208|gb|EGT75814.1| ATP-dependent RNA helicase srmB [Haemophilus haemolyticus M21127]
gi|386910147|gb|EIJ74808.1| DEAD/DEAH box helicase [Haemophilus haemolyticus HK386]
Length = 441
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 99/179 (55%), Gaps = 11/179 (6%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+S F++ L E++KA+EK G P+ IQ IPA + + V+ S+ +G+G+T A+LLP
Sbjct: 3 LSQFEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPA 62
Query: 200 VQML----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS 255
+Q L RR KP PR +VL T E A Q A+ ++ L+ + GGV+
Sbjct: 63 LQHLLDYPRR-------KPGPPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVA 115
Query: 256 SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+ DV N +++ATP +LQ+I++ N C + ++ DEAD + GFG + KI
Sbjct: 116 YQNHGDVFNTNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKI 174
>gi|378696603|ref|YP_005178561.1| ATP-dependent RNA helicase [Haemophilus influenzae 10810]
gi|301169122|emb|CBW28719.1| ATP-dependent RNA helicase [Haemophilus influenzae 10810]
Length = 439
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 99/179 (55%), Gaps = 11/179 (6%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+S F++ L E++KA+EK G P+ IQ IPA + + V+ S+ +G+G+T A+LLP
Sbjct: 3 LSQFEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPA 62
Query: 200 VQML----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS 255
+Q L RR KP PR +VL T E A Q A+ ++ L+ + GGV+
Sbjct: 63 LQHLLDYPRR-------KPGPPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVA 115
Query: 256 SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+ DV N +++ATP +LQ+I++ N C + ++ DEAD + GFG + KI
Sbjct: 116 YQNHGDVFNTNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKI 174
>gi|427710423|ref|YP_007052800.1| DEAD/DEAH box helicase [Nostoc sp. PCC 7107]
gi|427362928|gb|AFY45650.1| DEAD/DEAH box helicase domain protein [Nostoc sp. PCC 7107]
Length = 476
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 118/218 (54%), Gaps = 20/218 (9%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL E+I+AV ++G P+ IQ IPAVL+G+ ++ + +G+G+T ++ LPL+Q
Sbjct: 42 SFSHLGLSNEIIRAVTELGYTKPTPIQMQAIPAVLSGRDLLAGAQTGTGKTASFTLPLLQ 101
Query: 202 MLRRDEAL-------LPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGV 254
L +++L P+ RA++L T E A Q + S +L++ GGV
Sbjct: 102 KLSSEKSLKSTSYECFPI-----RALILTPTRELAAQVELNVREYSKYLKLNTMAMFGGV 156
Query: 255 SSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
S + + + +L+ATP +L H++ R V+ ++ ++VLDEAD + D GF +I +I
Sbjct: 157 SINPQKKLLRGRVDILVATPGRLLDHVQQRTVNLSNVEFLVLDEADRMLDMGFIRDIRRI 216
Query: 315 LNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLME 352
L+ L Q +L A ++ + E + L++
Sbjct: 217 LSLLPKQR--------QNLLFFATFSDKIKELATGLLD 246
>gi|224826248|ref|ZP_03699350.1| DEAD/DEAH box helicase domain protein [Pseudogulbenkiania
ferrooxidans 2002]
gi|224601349|gb|EEG07530.1| DEAD/DEAH box helicase domain protein [Pseudogulbenkiania
ferrooxidans 2002]
Length = 456
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 111/200 (55%), Gaps = 9/200 (4%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF ELGL E+++A+++ G P+ IQ IP VL+G+ ++ ++ +G+G+T A++LP+++
Sbjct: 2 SFAELGLSPEILRAIDEQGYSEPTPIQAKAIPLVLSGRDLLAAAQTGTGKTAAFMLPILE 61
Query: 202 MLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE 260
L++ + MHP RA++L T E ADQ A + L S++ GG++
Sbjct: 62 RLKKFASTSASPAMHPVRALILSPTRELADQIAVNAAAYTKYLPLRSTVVFGGMNMDPQT 121
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 320
+ +LIATP +L H+ + V + + +VLDEAD + D GF +I KIL L
Sbjct: 122 QELRRGVEILIATPGRLLDHVGQKTVQLNKVDVLVLDEADRMLDMGFINDIRKILGMLPR 181
Query: 321 SALKSNGQGFQTILVTAAIA 340
+ QT+L +A A
Sbjct: 182 TR--------QTLLFSATFA 193
>gi|383759970|ref|YP_005438956.1| ATP-dependent RNA helicase RhlE [Rubrivivax gelatinosus IL144]
gi|381380640|dbj|BAL97457.1| ATP-dependent RNA helicase RhlE [Rubrivivax gelatinosus IL144]
Length = 485
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/174 (38%), Positives = 98/174 (56%), Gaps = 1/174 (0%)
Query: 146 LGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRR 205
L L ++++AV G + IQ IP VL G+ V+ ++ +G+G+T A+ +PL+Q + R
Sbjct: 31 LPLDPKLLRAVADAGYTSMTPIQAKAIPIVLAGRDVMGAAQTGTGKTAAFTIPLLQKMLR 90
Query: 206 DEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSN 264
E HP RA+VL T E ADQ K + RL S++ GGV K
Sbjct: 91 HENTSMSPARHPVRALVLAPTRELADQVAANVKTYAKHTRLRSAVVFGGVDMKPQTLELK 150
Query: 265 APIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
A + +LIATP +L HIE +N + + YVVLDEAD + D GF P++ +IL+ L
Sbjct: 151 AGVEVLIATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYL 204
>gi|329122297|ref|ZP_08250885.1| ATP-dependent RNA helicase SrmB [Haemophilus aegyptius ATCC 11116]
gi|327473858|gb|EGF19275.1| ATP-dependent RNA helicase SrmB [Haemophilus aegyptius ATCC 11116]
Length = 444
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 99/179 (55%), Gaps = 11/179 (6%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+S F++ L E++KA+EK G P+ IQ IPA + + V+ S+ +G+G+T A+LLP
Sbjct: 3 LSQFEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPA 62
Query: 200 VQML----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS 255
+Q L RR KP PR +VL T E A Q A+ ++ L+ + GGV+
Sbjct: 63 LQHLLDYPRR-------KPGPPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVA 115
Query: 256 SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+ DV N +++ATP +LQ+I++ N C + ++ DEAD + GFG + KI
Sbjct: 116 YQNHGDVFNTNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKI 174
>gi|148264031|ref|YP_001230737.1| DEAD/DEAH box helicase [Geobacter uraniireducens Rf4]
gi|146397531|gb|ABQ26164.1| DEAD/DEAH box helicase domain protein [Geobacter uraniireducens
Rf4]
Length = 438
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 97/173 (56%), Gaps = 2/173 (1%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL+AE++ A+ G P+ IQ IP + G ++ + +G+G+T A+ LP+VQ
Sbjct: 2 SFESLGLRAELLSAIAAQGYTTPTPIQTEAIPVIFEGCDLLAGAQTGTGKTAAFALPIVQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L E + P K PRA+VL T E A Q + L S+M GGV+ +A +
Sbjct: 62 RL--GENIPPDKRRRPRALVLVPTRELAAQVSEQMNNYARRLSLRSTMIYGGVNIQAQIE 119
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+ + +++ATP +L H E ++ I+++VLDEAD + D GF +I K+
Sbjct: 120 RLHRGVDIVVATPGRLLDHAERGTINLSRIKFLVLDEADRMLDLGFIDDIHKV 172
>gi|148982431|ref|ZP_01816753.1| ATP-dependent RNA helicase SrmB [Vibrionales bacterium SWAT-3]
gi|145960483|gb|EDK25855.1| ATP-dependent RNA helicase SrmB [Vibrionales bacterium SWAT-3]
Length = 421
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 103/181 (56%), Gaps = 13/181 (7%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F EL L E++KA+++MG P++IQ IP L+G+ V+ S+ +G+G+T +++LP
Sbjct: 1 MIRTFAELDLNQELLKAIDEMGYERPTQIQAEAIPQALDGRDVLASAPTGTGKTASFVLP 60
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESA----DQGFHMAKFISHCARLDSSMENGG 253
+Q L+ P K P R ++L T E A DQ +AK+ + L+ GG
Sbjct: 61 ALQYLQD----FPRKKAGPARMLILTPTRELAMQITDQARELAKYTA----LNIFTITGG 112
Query: 254 VSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISK 313
V + D+ +++ATP ++++IE C I +++LDEAD + D GFGP + +
Sbjct: 113 VMYQEHADILGTTQDIVVATPGRLMEYIEAERFDCRAIEWLILDEADRMLDMGFGPVVDR 172
Query: 314 I 314
+
Sbjct: 173 L 173
>gi|347541119|ref|YP_004848545.1| ATP-dependent RNA helicase RhlE [Pseudogulbenkiania sp. NH8B]
gi|345644298|dbj|BAK78131.1| ATP-dependent RNA helicase RhlE [Pseudogulbenkiania sp. NH8B]
Length = 455
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 111/200 (55%), Gaps = 9/200 (4%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF ELGL E+++A+++ G P+ IQ IP VL+G+ ++ ++ +G+G+T A++LP+++
Sbjct: 2 SFAELGLSPEILRAIDEQGYSEPTPIQAKAIPLVLSGRDLLAAAQTGTGKTAAFMLPILE 61
Query: 202 MLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE 260
L++ + MHP RA++L T E ADQ A + L S++ GG++
Sbjct: 62 RLKKFASTSASPAMHPVRALILSPTRELADQIAVNAAAYTKYLPLRSTVVFGGMNMDPQT 121
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 320
+ +LIATP +L H+ + V + + +VLDEAD + D GF +I KIL L
Sbjct: 122 QELRRGVEILIATPGRLLDHVGQKTVQLNKVDVLVLDEADRMLDMGFINDIRKILGMLPR 181
Query: 321 SALKSNGQGFQTILVTAAIA 340
+ QT+L +A A
Sbjct: 182 TR--------QTLLFSATFA 193
>gi|320166666|gb|EFW43565.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 754
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 108/188 (57%), Gaps = 1/188 (0%)
Query: 132 SSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGR 191
S+G E +F+ LGL +I A+ + + P+ IQ +P VL G +++ +GSG+
Sbjct: 344 SNGPEMENKKTFESLGLSPALIAALAEQEITTPTRIQSRALPQVLAGHDTGIAAETGSGK 403
Query: 192 TLAYLLPLVQMLRRDEALLP-MKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSME 250
TL+YLLP+V+ +++ +A ++P PRA++L A Q +++K + + +
Sbjct: 404 TLSYLLPIVEGIKKSDAQGDFVRPGRPRALILVPHRLLAMQVANVSKRLGKAVKFSTFCV 463
Query: 251 NGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPE 310
GG + P+ +++ATP +L+ ++++ VS D++Y+VLDEAD LF+ F E
Sbjct: 464 MGGDRISRQKSAMEKPLDVMVATPQRLLELLQNKYVSLADVKYLVLDEADALFEEQFLAE 523
Query: 311 ISKILNPL 318
I+ +L PL
Sbjct: 524 ITTVLRPL 531
>gi|145640383|ref|ZP_01795967.1| ATP-dependent RNA helicase [Haemophilus influenzae R3021]
gi|145274969|gb|EDK14831.1| ATP-dependent RNA helicase [Haemophilus influenzae 22.4-21]
Length = 402
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 99/179 (55%), Gaps = 11/179 (6%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+S F++ L E++KA+EK G P+ IQ IPA + + V+ S+ +G+G+T A+LLP
Sbjct: 3 LSQFEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPA 62
Query: 200 VQML----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS 255
+Q L RR KP PR +VL T E A Q A+ ++ L+ + GGV+
Sbjct: 63 LQHLLDYPRR-------KPGPPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVA 115
Query: 256 SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+ DV N +++ATP +LQ+I++ N C + ++ DEAD + GFG + KI
Sbjct: 116 YQNHGDVFNTNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKI 174
>gi|319775651|ref|YP_004138139.1| ATP-dependent RNA helicase [Haemophilus influenzae F3047]
gi|317450242|emb|CBY86458.1| ATP-dependent RNA helicase [Haemophilus influenzae F3047]
Length = 444
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 99/179 (55%), Gaps = 11/179 (6%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+S F++ L E++KA+EK G P+ IQ IPA + + V+ S+ +G+G+T A+LLP
Sbjct: 3 LSQFEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPA 62
Query: 200 VQML----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS 255
+Q L RR KP PR +VL T E A Q A+ ++ L+ + GGV+
Sbjct: 63 LQHLLDYPRR-------KPGPPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVA 115
Query: 256 SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+ DV N +++ATP +LQ+I++ N C + ++ DEAD + GFG + KI
Sbjct: 116 YQNHGDVFNTNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKI 174
>gi|417949719|ref|ZP_12592851.1| ATP-dependent RNA helicase SrmB [Vibrio splendidus ATCC 33789]
gi|342807859|gb|EGU43037.1| ATP-dependent RNA helicase SrmB [Vibrio splendidus ATCC 33789]
Length = 421
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 103/181 (56%), Gaps = 13/181 (7%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F EL L E++KA+++MG P++IQ IP L+G+ V+ S+ +G+G+T +++LP
Sbjct: 1 MIRTFAELDLNQELLKAIDEMGYERPTQIQAEAIPQALDGRDVLASAPTGTGKTASFVLP 60
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESA----DQGFHMAKFISHCARLDSSMENGG 253
+Q L+ P K P R ++L T E A DQ +AK+ + L+ GG
Sbjct: 61 ALQYLQD----FPRKKAGPARMLILTPTRELAMQITDQARELAKYTA----LNIFTITGG 112
Query: 254 VSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISK 313
V + D+ +++ATP ++++IE C I +++LDEAD + D GFGP + +
Sbjct: 113 VMYQEHADILGTTQDIVVATPGRLMEYIEAERFDCRAIEWLILDEADRMLDMGFGPVVDR 172
Query: 314 I 314
+
Sbjct: 173 L 173
>gi|299532061|ref|ZP_07045456.1| hypothetical protein CTS44_14723 [Comamonas testosteroni S44]
gi|298719976|gb|EFI60938.1| hypothetical protein CTS44_14723 [Comamonas testosteroni S44]
Length = 464
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 66/171 (38%), Positives = 95/171 (55%), Gaps = 1/171 (0%)
Query: 152 MIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLP 211
+ +AV MG + IQ IP VL GK V+ ++ +G+G+T A+ LPL+Q L R E
Sbjct: 5 LARAVADMGYESMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQRLMRHENASA 64
Query: 212 MKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGML 270
HP RA+VL T E ADQ + +L S++ GG+ K + +L
Sbjct: 65 SPARHPVRALVLLPTRELADQVAQQIALYAKHTKLRSTVVFGGMDMKPQTIELKKGVEVL 124
Query: 271 IATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDS 321
+ATP +L HIE +NV + + YVVLDEAD + D GF P++ +IL+ L S
Sbjct: 125 VATPGRLLDHIEAKNVVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKS 175
>gi|328865714|gb|EGG14100.1| putative RNA helicase [Dictyostelium fasciculatum]
Length = 1076
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 72/226 (31%), Positives = 121/226 (53%), Gaps = 22/226 (9%)
Query: 121 QLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKS 180
+L++I ER+K G FQ + L + KAV K G P+ IQ + IP +L G+
Sbjct: 255 RLTDIQDERKKKMGG-------FQGMDLHKFLFKAVMKKGFKQPTPIQRLTIPLILEGQD 307
Query: 181 VVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 240
VV + +GSG+T A+++P++Q L + + RAI+L T E A Q + + K +S
Sbjct: 308 VVGMARTGSGKTAAFVIPMIQKLAQHS-----HKVGARAIILSPTRELALQTYRVVKELS 362
Query: 241 HCARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 299
+ L S + GG + + +++ P ++IATP ++ H+ + N+ ++Y+V DEA
Sbjct: 363 SGSDLRSCVIVGGDNMADQFTELARNP-DIIIATPGRLVHHLTEVNMGLHTVQYIVFDEA 421
Query: 300 DTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 345
D LF+ GF ++ +I+ L S QT+L +A + ML E
Sbjct: 422 DRLFEMGFADQLQEIITKLSPSR--------QTLLFSATLPSMLAE 459
>gi|145630403|ref|ZP_01786184.1| ATP-dependent RNA helicase [Haemophilus influenzae R3021]
gi|260582313|ref|ZP_05850106.1| ATP-dependent RNA helicase [Haemophilus influenzae NT127]
gi|144984138|gb|EDJ91575.1| ATP-dependent RNA helicase [Haemophilus influenzae R3021]
gi|260094681|gb|EEW78576.1| ATP-dependent RNA helicase [Haemophilus influenzae NT127]
Length = 444
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 99/179 (55%), Gaps = 11/179 (6%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+S F++ L E++KA+EK G P+ IQ IPA + + V+ S+ +G+G+T A+LLP
Sbjct: 3 LSQFEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPA 62
Query: 200 VQML----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS 255
+Q L RR KP PR +VL T E A Q A+ ++ L+ + GGV+
Sbjct: 63 LQHLLDYPRR-------KPGPPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVA 115
Query: 256 SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+ DV N +++ATP +LQ+I++ N C + ++ DEAD + GFG + KI
Sbjct: 116 YQNHGDVFNTNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKI 174
>gi|307729080|ref|YP_003906304.1| DEAD/DEAH box helicase [Burkholderia sp. CCGE1003]
gi|307583615|gb|ADN57013.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1003]
Length = 487
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 104/180 (57%), Gaps = 3/180 (1%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
++F + GL +++KAV++ G P+ IQ IP VL G+ V+ ++ +G+G+T ++ LP++
Sbjct: 11 ATFDQFGLAPDILKAVKESGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPII 70
Query: 201 QMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSSKA 258
Q L + HP RA++L T E ADQ ++ + H A L S++ GGV
Sbjct: 71 QRLLPQASTSASPARHPVRALILTPTRELADQVAANVQAYAKHTA-LRSAVVFGGVDMNP 129
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ + +LIATP +L H++ + + ++ +VLDEAD + D GF P++ +ILN L
Sbjct: 130 QSEQLRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLL 189
>gi|309781736|ref|ZP_07676469.1| ATP-dependent RNA helicase [Ralstonia sp. 5_7_47FAA]
gi|308919377|gb|EFP65041.1| ATP-dependent RNA helicase [Ralstonia sp. 5_7_47FAA]
Length = 498
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 109/197 (55%), Gaps = 4/197 (2%)
Query: 124 NIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVL 183
N A+ E S E V+ F GL ++++A+ + G P+ IQ IP V G V+
Sbjct: 2 NTATMSEASEAPANESVT-FDSFGLHPDVLRALTESGYTKPTPIQAAAIPVVTAGHDVMG 60
Query: 184 SSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGF-HMAKFISH 241
++ +G+G+T + LP++ L D HP RA++L T E ADQ + ++AK+ +
Sbjct: 61 AAQTGTGKTAGFSLPIIHNLLPDANTSASPARHPVRALILTPTRELADQVYDNVAKYAKY 120
Query: 242 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 301
A L S++ GGV + + +L+ATP +L H++ R+V+ +R +VLDEAD
Sbjct: 121 TA-LRSAVVFGGVDMNPQTEQLRRGVEILVATPGRLLDHVQQRSVNLSQVRMLVLDEADR 179
Query: 302 LFDRGFGPEISKILNPL 318
+ D GF P++ +I+N L
Sbjct: 180 MLDMGFLPDLQRIINLL 196
>gi|83746502|ref|ZP_00943553.1| ATP-dependent RNA helicase [Ralstonia solanacearum UW551]
gi|83726833|gb|EAP73960.1| ATP-dependent RNA helicase [Ralstonia solanacearum UW551]
Length = 566
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 104/177 (58%), Gaps = 3/177 (1%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F GL ++++A+ + G P+ IQ IP V+ G+ V+ ++ +G+G+T + LP++Q
Sbjct: 87 TFDTFGLHPDILRALTESGYTRPTPIQAAAIPVVVGGRDVMGAAQTGTGKTAGFSLPIIQ 146
Query: 202 MLRRDEALLPMKPMHP-RAIVLCTTEESADQGF-HMAKFISHCARLDSSMENGGVSSKAL 259
L + HP RA++L T E ADQ + ++AK+ + A L S++ GGV
Sbjct: 147 NLLPEANTSASPARHPVRALILTPTRELADQVYDNVAKYAKYTA-LRSAVVFGGVDMNPQ 205
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ + +L+ATP +L H++ R+V+ +R +VLDEAD + D GF P++ +I+N
Sbjct: 206 TEQLRRGVEILVATPGRLLDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIIN 262
>gi|219126769|ref|XP_002183622.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217404859|gb|EEC44804.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 531
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 103/181 (56%), Gaps = 4/181 (2%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLN--GKSVVLSSGSGSGRTLAYLLPL 199
++ +LGL E+++A+ ++ L P+ +Q + IP +L + + + +GSG+TLAY LPL
Sbjct: 30 AWNQLGLWTELVEAMARLELQTPTPVQQLAIPELLKEPPQHLAFLAATGSGKTLAYALPL 89
Query: 200 VQMLRRDEALLPM--KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
+QML++ E +P PR ++L T E Q + K +SH +L S GG
Sbjct: 90 LQMLKQGEVFADYERRPKRPRLLILVPTRELVVQITSVIKSVSHSIKLSSCSITGGEDYG 149
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNP 317
N PI +++ATP + +H +D N+ + ++V+DE DT+ ++GF E+ ++L P
Sbjct: 150 VQRRQLNRPIDVVVATPGRLTKHWKDSNLFLGSLEHIVVDEMDTMLEQGFYRELRQLLYP 209
Query: 318 L 318
+
Sbjct: 210 V 210
>gi|170691820|ref|ZP_02882984.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
gi|170143104|gb|EDT11268.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
Length = 493
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 104/180 (57%), Gaps = 3/180 (1%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
++F + GL +++KAV++ G P+ IQ IP VL G+ V+ ++ +G+G+T ++ LP++
Sbjct: 11 ATFDQFGLAPDILKAVKESGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPII 70
Query: 201 QMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSSKA 258
Q L + HP RA++L T E ADQ ++ + H A L S++ GGV
Sbjct: 71 QRLLPQASTSASPARHPVRALILTPTRELADQVAANVQSYAKHTA-LRSAVVFGGVDMNP 129
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ + +LIATP +L H++ + + ++ +VLDEAD + D GF P++ +ILN L
Sbjct: 130 QSEQLRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLL 189
>gi|149245944|ref|XP_001527442.1| hypothetical protein LELG_02271 [Lodderomyces elongisporus NRRL
YB-4239]
gi|152013518|sp|A5DY34.1|DRS1_LODEL RecName: Full=ATP-dependent RNA helicase DRS1
gi|146449836|gb|EDK44092.1| hypothetical protein LELG_02271 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 686
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 113/199 (56%), Gaps = 13/199 (6%)
Query: 122 LSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSV 181
L N +E ++ ++A +FQEL L ++K+++++G VP+ +Q IP L GK +
Sbjct: 177 LDNFYESQETNTSASALKSKTFQELQLSRPILKSLQQLGFTVPTPVQASTIPIALLGKDI 236
Query: 182 VLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESA----DQGFHMAK 237
V S+ +GSG+T AYL+P+++ L L +AI+L T E A D G + +
Sbjct: 237 VASAQTGSGKTAAYLIPIIERL-----LYVKNSTSTKAIILTPTRELAIQVHDVGRKLGQ 291
Query: 238 FISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR-NVSCDDIRYVVL 296
F+S+ L+ M GG+S K E ++IATP ++ HI + + S +D++ +++
Sbjct: 292 FVSN---LNFGMAVGGLSLKQQEQQLKTRPDIVIATPGRLIDHIRNSPSFSVEDVQVLII 348
Query: 297 DEADTLFDRGFGPEISKIL 315
DEAD + + GF E+++IL
Sbjct: 349 DEADRMLEEGFQEELTEIL 367
>gi|375107400|ref|ZP_09753661.1| DNA/RNA helicase, superfamily II [Burkholderiales bacterium
JOSHI_001]
gi|374668131|gb|EHR72916.1| DNA/RNA helicase, superfamily II [Burkholderiales bacterium
JOSHI_001]
Length = 492
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 73/187 (39%), Positives = 106/187 (56%), Gaps = 8/187 (4%)
Query: 138 EVVSS---FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLA 194
EV S+ F L L ++ +AV G + IQ IP VL+G+ V+ ++ +G+G+T A
Sbjct: 17 EVASAPALFNTLPLDPKLQRAVADQGYASMTPIQAKAIPIVLDGRDVMGAAQTGTGKTAA 76
Query: 195 YLLPLVQ-MLRRDEALLPMKPM-HP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMEN 251
+ LPL+Q ML+ + A M P HP RA+VL T E ADQ K + L S++
Sbjct: 77 FSLPLLQKMLKHENA--SMSPARHPVRALVLAPTRELADQVAANVKAYAKHTNLRSTVVF 134
Query: 252 GGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEI 311
GG+ K A + +LIATP +L HIE +N + + YVVLDEAD + D GF P++
Sbjct: 135 GGIDMKPQTAELKAGVEVLIATPGRLLDHIEAKNCVLNQVEYVVLDEADRMLDIGFLPDL 194
Query: 312 SKILNPL 318
+IL+ L
Sbjct: 195 QRILSYL 201
>gi|126442203|ref|YP_001058242.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 668]
gi|167901897|ref|ZP_02489102.1| DEAD/DEAH box helicase [Burkholderia pseudomallei NCTC 13177]
gi|237811490|ref|YP_002895941.1| dead/deah box helicase [Burkholderia pseudomallei MSHR346]
gi|126221696|gb|ABN85202.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 668]
gi|237505268|gb|ACQ97586.1| dead/deah box helicase [Burkholderia pseudomallei MSHR346]
Length = 481
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 74/242 (30%), Positives = 124/242 (51%), Gaps = 16/242 (6%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V ++F + GL AE++KA+ + G P+ IQ IP VL+G+ V+ ++ +G+G+T ++ LP
Sbjct: 9 VDATFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLP 68
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSS 256
++Q L HP RA++L T E ADQ ++ + H L S++ GGV
Sbjct: 69 IIQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTP-LRSAVVFGGVDM 127
Query: 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ +LIATP +L H++ + + ++ +VLDEAD + D GF P++ +ILN
Sbjct: 128 NPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILN 187
Query: 317 PLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMEC-----LERDNAGKVTAMLLEMDQ 371
L QT+L +A + + + S+ + + R NA T + D
Sbjct: 188 LLPKER--------QTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDV 239
Query: 372 AE 373
AE
Sbjct: 240 AE 241
>gi|51449873|gb|AAU01909.1| putative ATP-dependent RNA helicase [Oryza sativa Indica Group]
Length = 828
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 128/241 (53%), Gaps = 29/241 (12%)
Query: 109 ENKPSPPQPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQ 168
E+KP P +P+++ AS+R+ SG F+ +GL E+ + V G VP+ IQ
Sbjct: 3 EHKPLPGRPKRE--GEGASKRKAKSGG-------FESMGLCEEVYRGVRHKGYRVPTPIQ 53
Query: 169 CVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEES 228
+P +L G + + +GSG+T A+L+P++Q LRR +A + RA++L T +
Sbjct: 54 RKAMPLILAGHDIAAMARTGSGKTAAFLVPMIQRLRRHDAGAGI-----RALILSPTRDL 108
Query: 229 ADQGFHMAKFISHCARLDSSMENGGVSSKA-LEDVSNAPIGMLIATPSEVLQH---IEDR 284
A Q A+ + L S+ GG S ++ E+++ P ++IATP ++ H +ED
Sbjct: 109 ATQTLKFAQQLGKFTDLKISLIVGGDSMESQFEELAENP-DIIIATPGRLVHHLAEVEDL 167
Query: 285 NVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLG 344
N+ + YVV DEAD+LF G ++ IL+ L D+ QT+L +A + + L
Sbjct: 168 NLRT--VEYVVFDEADSLFSLGLIQQLHDILHKLSDTR--------QTLLFSATLPQALA 217
Query: 345 E 345
+
Sbjct: 218 D 218
>gi|241663607|ref|YP_002981967.1| DEAD/DEAH box helicase [Ralstonia pickettii 12D]
gi|240865634|gb|ACS63295.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12D]
Length = 493
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 102/177 (57%), Gaps = 3/177 (1%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F GL ++++A+ + G P+ IQ IP V G+ V+ ++ +G+G+T + LP++
Sbjct: 14 TFDSFGLHPDVLRALTESGYTKPTPIQAAAIPVVTAGRDVMGAAQTGTGKTAGFSLPIIH 73
Query: 202 MLRRDEALLPMKPMHP-RAIVLCTTEESADQGF-HMAKFISHCARLDSSMENGGVSSKAL 259
L D HP RA++L T E ADQ + ++AK+ + A L S++ GGV
Sbjct: 74 NLLPDANTSASPARHPVRALILTPTRELADQVYDNVAKYAKYTA-LRSAVVFGGVDMNPQ 132
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ + +L+ATP +L H++ R+V+ +R +VLDEAD + D GF P++ +I+N
Sbjct: 133 TEQLRRGVEILVATPGRLLDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIIN 189
>gi|407070028|ref|ZP_11100866.1| ATP-dependent RNA helicase SrmB [Vibrio cyclitrophicus ZF14]
Length = 421
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 101/177 (57%), Gaps = 5/177 (2%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F EL L E++KA+++MG P++IQ IP L+G+ V+ S+ +G+G+T +++LP
Sbjct: 1 MIRTFAELDLNQELLKAIDEMGYERPTQIQAEAIPQALDGRDVLASAPTGTGKTASFVLP 60
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
+Q L P K P R ++L T E A Q A+ ++ L+ GGV +
Sbjct: 61 ALQYLLD----FPRKKSGPARMLILTPTRELAMQITEQARELAKYTSLNIFTITGGVMYQ 116
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
D+ + +++ATP ++++IE C I ++VLDEAD + D GFGP + ++
Sbjct: 117 EHADILSTTQDIVVATPGRLMEYIEGERFDCRAIEWLVLDEADRMLDMGFGPVVDRL 173
>gi|66800711|ref|XP_629281.1| hypothetical protein DDB_G0292992 [Dictyostelium discoideum AX4]
gi|74996456|sp|Q54CD8.1|DDX54_DICDI RecName: Full=ATP-dependent RNA helicase ddx54; AltName:
Full=ATP-dependent RNA helicase helA; AltName: Full=DEAD
box protein 54
gi|60462646|gb|EAL60848.1| hypothetical protein DDB_G0292992 [Dictyostelium discoideum AX4]
Length = 1091
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 112/202 (55%), Gaps = 15/202 (7%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
FQ + L ++KA+ K G VP+ IQ IP +L+G +V + +GSG+T A+++P++Q
Sbjct: 232 FQSMDLTKNLLKAILKKGFNVPTPIQRKSIPMILDGHDIVGMARTGSGKTGAFVIPMIQK 291
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS-SKALED 261
L + + RA++L T E A Q F + K S +L + + GG S D
Sbjct: 292 LGDHSTTVGV-----RAVILSPTRELAIQTFKVVKDFSQGTQLRTILIVGGDSMEDQFTD 346
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDS 321
++ P ++IATP ++ H+ + +S ++Y+V DEAD LF+ GF ++++IL+ L ++
Sbjct: 347 LARNP-DIIIATPGRLMHHLLETGMSLSKVQYIVFDEADRLFEMGFNEQLTEILSKLSEN 405
Query: 322 ALKSNGQGFQTILVTAAIAEML 343
QT+L +A + +L
Sbjct: 406 R--------QTLLFSATLPSLL 419
>gi|37573051|dbj|BAC98579.1| putative ATP-dependent RNA-helicase [Oryza sativa Japonica Group]
Length = 828
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 128/241 (53%), Gaps = 29/241 (12%)
Query: 109 ENKPSPPQPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQ 168
E+KP P +P+++ AS+R+ SG F+ +GL E+ + V G VP+ IQ
Sbjct: 3 EHKPLPGRPKRE--GEGASKRKAKSGG-------FESMGLCEEVYRGVRHKGYRVPTPIQ 53
Query: 169 CVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEES 228
+P +L G + + +GSG+T A+L+P++Q LRR +A + RA++L T +
Sbjct: 54 RKAMPLILAGHDIAAMARTGSGKTAAFLVPMIQRLRRHDAGAGI-----RALILSPTRDL 108
Query: 229 ADQGFHMAKFISHCARLDSSMENGGVSSKA-LEDVSNAPIGMLIATPSEVLQH---IEDR 284
A Q A+ + L S+ GG S ++ E+++ P ++IATP ++ H +ED
Sbjct: 109 ATQTLKFAQQLGKFTDLKISLIVGGDSMESQFEELAENP-DIIIATPGRLVHHLAEVEDL 167
Query: 285 NVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLG 344
N+ + YVV DEAD+LF G ++ IL+ L D+ QT+L +A + + L
Sbjct: 168 NLRT--VEYVVFDEADSLFSLGLIQQLHDILHKLSDTR--------QTLLFSATLPQALA 217
Query: 345 E 345
+
Sbjct: 218 D 218
>gi|345429300|ref|YP_004822418.1| ATP-dependent RNA helicase [Haemophilus parainfluenzae T3T1]
gi|301155361|emb|CBW14827.1| ATP-dependent RNA helicase [Haemophilus parainfluenzae T3T1]
Length = 442
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 116/222 (52%), Gaps = 22/222 (9%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+S F+E L E++KA+EK G P+ IQ IPA + + V+ S+ +G+G+T A+LLP
Sbjct: 3 LSPFEEFDLSPELLKALEKKGYTRPTAIQLEAIPAAMEERDVLGSAPTGTGKTAAFLLPA 62
Query: 200 VQML----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS 255
+Q L RR KP PR ++L T E A Q A+ ++ L + GGV+
Sbjct: 63 IQHLLDYPRR-------KPGAPRILILTPTRELAMQVAEQAEELAQFTHLKIATITGGVA 115
Query: 256 SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
+ +V N+ +++ATP +LQ+I++ N C + ++ DEAD + GFG + KI
Sbjct: 116 YQNHGEVFNSNQDIVVATPGRLLQYIKEENFDCRAVEMLIFDEADRMLQMGFGQDAEKI- 174
Query: 316 NPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERD 357
A ++ + QT+L +A + GE L E L D
Sbjct: 175 ------AAETRWRK-QTLLFSATLE---GELLVDFAERLLND 206
>gi|407785286|ref|ZP_11132434.1| ATP-dependent RNA helicase [Celeribacter baekdonensis B30]
gi|407203318|gb|EKE73305.1| ATP-dependent RNA helicase [Celeribacter baekdonensis B30]
Length = 542
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 99/177 (55%), Gaps = 4/177 (2%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++ F +L L +++KA+E G P+ IQ IP L G+ V+ + +G+G+T +++LP+
Sbjct: 23 LTKFSDLNLAPKVLKAIEDAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFVLPM 82
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
+ +L R A M PR++VLC T E A Q + +L ++ GGVS K
Sbjct: 83 ITLLSRGRARARM----PRSLVLCPTRELAAQVAENFDTYTKYMKLTKALLIGGVSFKEQ 138
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ + + + +LIATP +L H E + D++ +V+DEAD + D GF P+I +I
Sbjct: 139 DILIDKGVDVLIATPGRLLDHFERGKLILSDVKVMVVDEADRMLDMGFIPDIERIFG 195
>gi|330448349|ref|ZP_08311997.1| DEAD/DEAH box helicase family protein [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
gi|328492540|dbj|GAA06494.1| DEAD/DEAH box helicase family protein [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
Length = 446
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 73/254 (28%), Positives = 132/254 (51%), Gaps = 14/254 (5%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F++LGL ++K + + +EIQ IP + GK ++ SS +GSG+TLA+LLP +Q
Sbjct: 3 FKDLGLDPRLLKKINHLAFDRATEIQHTAIPVAIAGKDILASSKTGSGKTLAFLLPAMQR 62
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS-SKALED 261
+ R + P PR ++L T E A Q F + ++ D ++ GG + + ++
Sbjct: 63 MYRSK---PFTRRDPRVVILTPTRELAKQVFAQLRTLNAGTPYDGTLIVGGENFNDQVKA 119
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDS 321
+ N P+ ++ATP + H+E R+ D + ++LDEAD + D GF PE+ +I
Sbjct: 120 LRNDPM-FVVATPGRLADHLEHRSTHLDGLEMLILDEADRMLDLGFAPELRRINEA---- 174
Query: 322 ALKSNGQGFQTILVTAAI-AEMLGEQLSSLMECLERDNAGKVTAMLLEMDQAEVF-DLTE 379
+N + QT++ +A + + + E S +++ +R + G ++ Q + D +
Sbjct: 175 ---ANHRRRQTLMFSATLDNQEVIEIASEMLDNPKRISIGHSAEEHKDITQRFILCDHLD 231
Query: 380 SQDALKKKVVEAMD 393
+ AL KV+E D
Sbjct: 232 HKQALLDKVLETTD 245
>gi|419845515|ref|ZP_14368782.1| DEAD/DEAH box helicase [Haemophilus parainfluenzae HK2019]
gi|386415383|gb|EIJ29915.1| DEAD/DEAH box helicase [Haemophilus parainfluenzae HK2019]
Length = 442
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 116/222 (52%), Gaps = 22/222 (9%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+S F+E L E++KA+EK G P+ IQ IPA + + V+ S+ +G+G+T A+LLP
Sbjct: 3 LSPFEEFDLSPELLKALEKKGYTRPTAIQLEAIPAAMEERDVLGSAPTGTGKTAAFLLPA 62
Query: 200 VQML----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS 255
+Q L RR KP PR ++L T E A Q A+ ++ L + GGV+
Sbjct: 63 IQHLLDYPRR-------KPGAPRILILTPTRELAMQVAEQAEELAQFTHLKIATITGGVA 115
Query: 256 SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
+ +V N+ +++ATP +LQ+I++ N C + ++ DEAD + GFG + KI
Sbjct: 116 YQNHGEVFNSNQDIVVATPGRLLQYIKEENFDCRAVEMLIFDEADRMLQMGFGQDAEKI- 174
Query: 316 NPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERD 357
A ++ + QT+L +A + GE L E L D
Sbjct: 175 ------AAETRWRK-QTLLFSATLE---GELLVDFAERLLND 206
>gi|115476424|ref|NP_001061808.1| Os08g0416100 [Oryza sativa Japonica Group]
gi|158513705|sp|A3BT52.2|RH29_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 29; Short=RNAH
gi|113623777|dbj|BAF23722.1| Os08g0416100 [Oryza sativa Japonica Group]
gi|222640554|gb|EEE68686.1| hypothetical protein OsJ_27320 [Oryza sativa Japonica Group]
Length = 851
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 128/241 (53%), Gaps = 29/241 (12%)
Query: 109 ENKPSPPQPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQ 168
E+KP P +P+++ AS+R+ SG F+ +GL E+ + V G VP+ IQ
Sbjct: 26 EHKPLPGRPKRE--GEGASKRKAKSGG-------FESMGLCEEVYRGVRHKGYRVPTPIQ 76
Query: 169 CVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEES 228
+P +L G + + +GSG+T A+L+P++Q LRR +A + RA++L T +
Sbjct: 77 RKAMPLILAGHDIAAMARTGSGKTAAFLVPMIQRLRRHDAGAGI-----RALILSPTRDL 131
Query: 229 ADQGFHMAKFISHCARLDSSMENGGVSSKA-LEDVSNAPIGMLIATPSEVLQH---IEDR 284
A Q A+ + L S+ GG S ++ E+++ P ++IATP ++ H +ED
Sbjct: 132 ATQTLKFAQQLGKFTDLKISLIVGGDSMESQFEELAENP-DIIIATPGRLVHHLAEVEDL 190
Query: 285 NVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLG 344
N+ + YVV DEAD+LF G ++ IL+ L D+ QT+L +A + + L
Sbjct: 191 NLRT--VEYVVFDEADSLFSLGLIQQLHDILHKLSDTR--------QTLLFSATLPQALA 240
Query: 345 E 345
+
Sbjct: 241 D 241
>gi|325577158|ref|ZP_08147642.1| ATP-dependent RNA helicase SrmB [Haemophilus parainfluenzae ATCC
33392]
gi|325160740|gb|EGC72861.1| ATP-dependent RNA helicase SrmB [Haemophilus parainfluenzae ATCC
33392]
Length = 443
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 99/179 (55%), Gaps = 11/179 (6%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+S F+E L E++KA+EK G P+ IQ IPA + + V+ S+ +G+G+T A+LLP
Sbjct: 3 LSPFEEFDLSPELLKALEKKGYTRPTAIQLEAIPAAMEERDVLGSAPTGTGKTAAFLLPA 62
Query: 200 VQML----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS 255
+Q L RR KP PR ++L T E A Q A+ ++ L + GGV+
Sbjct: 63 IQHLLDYPRR-------KPGAPRILILTPTRELAMQVAEQAEELAQFTHLKIATITGGVA 115
Query: 256 SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+ +V N+ +++ATP +LQ+I++ N C + ++ DEAD + GFG + KI
Sbjct: 116 YQNHGEVFNSNQDIVVATPGRLLQYIKEENFDCRAVEMLIFDEADRMLQMGFGQDAEKI 174
>gi|53718749|ref|YP_107735.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei K96243]
gi|53725492|ref|YP_103512.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei ATCC 23344]
gi|67643786|ref|ZP_00442529.1| dead/deah box helicase [Burkholderia mallei GB8 horse 4]
gi|121599991|ref|YP_992380.1| DEAD/DEAH box helicase [Burkholderia mallei SAVP1]
gi|124383787|ref|YP_001026818.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10229]
gi|126449417|ref|YP_001079898.1| DEAD/DEAH box helicase [Burkholderia mallei NCTC 10247]
gi|126454058|ref|YP_001065480.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106a]
gi|134281039|ref|ZP_01767748.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 305]
gi|167893438|ref|ZP_02480840.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 7894]
gi|217419830|ref|ZP_03451336.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 576]
gi|242317719|ref|ZP_04816735.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106b]
gi|386862473|ref|YP_006275422.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1026b]
gi|403517911|ref|YP_006652044.1| DEAD/DEAH box helicase [Burkholderia pseudomallei BPC006]
gi|418390012|ref|ZP_12967823.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 354a]
gi|418538110|ref|ZP_13103738.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1026a]
gi|418541611|ref|ZP_13107086.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1258a]
gi|418547854|ref|ZP_13112990.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1258b]
gi|418554032|ref|ZP_13118832.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 354e]
gi|52209163|emb|CAH35107.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
K96243]
gi|52428915|gb|AAU49508.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei ATCC 23344]
gi|121228801|gb|ABM51319.1| DEAD/DEAH box helicase [Burkholderia mallei SAVP1]
gi|124291807|gb|ABN01076.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10229]
gi|126227700|gb|ABN91240.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106a]
gi|126242287|gb|ABO05380.1| DEAD/DEAH box helicase [Burkholderia mallei NCTC 10247]
gi|134247345|gb|EBA47430.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 305]
gi|217397134|gb|EEC37150.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 576]
gi|238525219|gb|EEP88647.1| dead/deah box helicase [Burkholderia mallei GB8 horse 4]
gi|242140958|gb|EES27360.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106b]
gi|385348870|gb|EIF55466.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1026a]
gi|385357533|gb|EIF63583.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1258a]
gi|385359528|gb|EIF65484.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1258b]
gi|385370979|gb|EIF76201.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 354e]
gi|385375790|gb|EIF80532.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 354a]
gi|385659601|gb|AFI67024.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1026b]
gi|403073554|gb|AFR15134.1| DEAD/DEAH box helicase [Burkholderia pseudomallei BPC006]
Length = 482
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 74/242 (30%), Positives = 124/242 (51%), Gaps = 16/242 (6%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V ++F + GL AE++KA+ + G P+ IQ IP VL+G+ V+ ++ +G+G+T ++ LP
Sbjct: 9 VDATFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLP 68
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSS 256
++Q L HP RA++L T E ADQ ++ + H L S++ GGV
Sbjct: 69 IIQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTP-LRSAVVFGGVDM 127
Query: 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ +LIATP +L H++ + + ++ +VLDEAD + D GF P++ +ILN
Sbjct: 128 NPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILN 187
Query: 317 PLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMEC-----LERDNAGKVTAMLLEMDQ 371
L QT+L +A + + + S+ + + R NA T + D
Sbjct: 188 LLPKER--------QTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDV 239
Query: 372 AE 373
AE
Sbjct: 240 AE 241
>gi|373467933|ref|ZP_09559219.1| ATP-dependent RNA helicase SrmB [Haemophilus sp. oral taxon 851
str. F0397]
gi|371756971|gb|EHO45770.1| ATP-dependent RNA helicase SrmB [Haemophilus sp. oral taxon 851
str. F0397]
Length = 441
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 99/179 (55%), Gaps = 11/179 (6%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+S F++ L E++KA+EK G P+ IQ IPA + + V+ S+ +G+G+T A+LLP
Sbjct: 3 LSQFEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPA 62
Query: 200 VQML----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS 255
+Q L RR KP PR +VL T E A Q ++ ++ L+ + GGV+
Sbjct: 63 LQHLLDYPRR-------KPGPPRILVLTPTRELAMQVAEQSEELAQFTHLNIATITGGVA 115
Query: 256 SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+ DV N +++ATP +LQ+I++ N C + ++ DEAD + GFG + KI
Sbjct: 116 YQNHGDVFNTNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKI 174
>gi|300690871|ref|YP_003751866.1| DEAD/DEAH box helicase [Ralstonia solanacearum PSI07]
gi|299077931|emb|CBJ50571.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum
PSI07]
gi|344167288|emb|CCA79493.1| ATP-dependent RNA helicase, deaD-box family [blood disease
bacterium R229]
Length = 495
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 105/179 (58%), Gaps = 3/179 (1%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F GL ++++A+ + G P+ IQ IP V+ G+ V+ ++ +G+G+T + LP++Q
Sbjct: 16 TFDTFGLHPDILRALAESGYTRPTPIQAAAIPVVVAGRDVMGAAQTGTGKTAGFSLPIIQ 75
Query: 202 MLRRDEALLPMKPMHP-RAIVLCTTEESADQGF-HMAKFISHCARLDSSMENGGVSSKAL 259
L + HP RA++L T E ADQ + ++AK+ + A L S++ GGV
Sbjct: 76 NLLPEANTSASPARHPVRALILTPTRELADQVYDNVAKYGKYTA-LRSAVVFGGVDMNPQ 134
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ + +L+ATP +L H++ R+V+ +R +VLDEAD + D GF P++ +I+N L
Sbjct: 135 TEQLRRGVEILVATPGRLLDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIINLL 193
>gi|419802853|ref|ZP_14328033.1| DEAD/DEAH box helicase [Haemophilus parainfluenzae HK262]
gi|385189093|gb|EIF36562.1| DEAD/DEAH box helicase [Haemophilus parainfluenzae HK262]
Length = 442
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 99/179 (55%), Gaps = 11/179 (6%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+S F+E L E++KA+EK G P+ IQ IPA + + V+ S+ +G+G+T A+LLP
Sbjct: 3 LSPFEEFDLSPELLKALEKKGYTRPTAIQLEAIPAAMEERDVLGSAPTGTGKTAAFLLPA 62
Query: 200 VQML----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS 255
+Q L RR KP PR ++L T E A Q A+ ++ L + GGV+
Sbjct: 63 IQHLLDYPRR-------KPGAPRILILTPTRELAMQVAEQAEELAQFTHLKIATITGGVA 115
Query: 256 SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+ +V N+ +++ATP +LQ+I++ N C + ++ DEAD + GFG + KI
Sbjct: 116 YQNHGEVFNSNQDIVVATPGRLLQYIKEENFDCRAVEMLIFDEADRMLQMGFGQDAEKI 174
>gi|76808776|ref|YP_332762.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1710b]
gi|76578229|gb|ABA47704.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
1710b]
Length = 559
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 74/242 (30%), Positives = 124/242 (51%), Gaps = 16/242 (6%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V ++F + GL AE++KA+ + G P+ IQ IP VL+G+ V+ ++ +G+G+T ++ LP
Sbjct: 86 VDATFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLP 145
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSS 256
++Q L HP RA++L T E ADQ ++ + H L S++ GGV
Sbjct: 146 IIQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTP-LRSAVVFGGVDM 204
Query: 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ +LIATP +L H++ + + ++ +VLDEAD + D GF P++ +ILN
Sbjct: 205 NPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILN 264
Query: 317 PLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMEC-----LERDNAGKVTAMLLEMDQ 371
L QT+L +A + + + S+ + + R NA T + D
Sbjct: 265 LLPKER--------QTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDV 316
Query: 372 AE 373
AE
Sbjct: 317 AE 318
>gi|86147398|ref|ZP_01065711.1| ATP-dependent RNA helicase SrmB [Vibrio sp. MED222]
gi|218708540|ref|YP_002416161.1| ATP-dependent RNA helicase SrmB [Vibrio splendidus LGP32]
gi|85834826|gb|EAQ52971.1| ATP-dependent RNA helicase SrmB [Vibrio sp. MED222]
gi|218321559|emb|CAV17511.1| ATP-dependent RNA helicase srmB [Vibrio splendidus LGP32]
Length = 421
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 101/177 (57%), Gaps = 5/177 (2%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F EL L E++KA+++MG P++IQ IP L+G+ V+ S+ +G+G+T +++LP
Sbjct: 1 MIRTFAELDLNQELLKAIDEMGYERPTQIQAEAIPQALDGRDVLASAPTGTGKTASFVLP 60
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
+Q L P K P R ++L T E A Q A+ ++ L+ GGV +
Sbjct: 61 ALQYLLD----FPRKKSGPARMLILTPTRELAMQITEQARELAKYTSLNIFTITGGVMYQ 116
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
D+ + +++ATP ++++IE C I ++VLDEAD + D GFGP + ++
Sbjct: 117 EHADILSTTQDIVVATPGRLMEYIEGERFDCRAIEWLVLDEADRMLDMGFGPVVDRL 173
>gi|66812836|ref|XP_640597.1| hypothetical protein DDB_G0281711 [Dictyostelium discoideum AX4]
gi|74897154|sp|Q54TJ4.1|DDX27_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx27; AltName:
Full=DEAD box protein 27
gi|60468614|gb|EAL66617.1| hypothetical protein DDB_G0281711 [Dictyostelium discoideum AX4]
Length = 783
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 65/181 (35%), Positives = 110/181 (60%), Gaps = 9/181 (4%)
Query: 138 EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLL 197
E + +F+EL L ++KAV+K+G P+ IQ IP LNGK ++ S+ +GSG+T A+LL
Sbjct: 187 EELPTFEELHLSRPLLKAVQKLGFSQPTPIQAKAIPLALNGKDILASASTGSGKTAAFLL 246
Query: 198 PLVQ-MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSS 256
P+++ +L RD + R ++L T E A Q + + ++ + + S + GG+S+
Sbjct: 247 PVLERLLFRDSEYRAI-----RVLILLPTRELALQCQSVMENLAQFSNITSCLIVGGLSN 301
Query: 257 KALE-DVSNAPIGMLIATPSEVLQHIED-RNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
KA E ++ +P ++IATP ++ H+ + + DD+ ++LDEAD L D GF EI+KI
Sbjct: 302 KAQEVELRKSP-DVVIATPGRLIDHLLNAHGIGLDDLEILILDEADRLLDMGFKDEINKI 360
Query: 315 L 315
+
Sbjct: 361 V 361
>gi|398835789|ref|ZP_10593146.1| DNA/RNA helicase, superfamily II [Herbaspirillum sp. YR522]
gi|398215227|gb|EJN01792.1| DNA/RNA helicase, superfamily II [Herbaspirillum sp. YR522]
Length = 487
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 99/177 (55%), Gaps = 1/177 (0%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F++ GL ++++A+ + G P+ IQ IP VL G+ V+ ++ +G+G+T + LP++Q+
Sbjct: 18 FEDFGLSPDILRALTEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQL 77
Query: 203 LRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L + HP RA++L T E ADQ K S L S++ GGV
Sbjct: 78 LLAHASTSASPARHPVRALILTPTRELADQVADNVKAYSRFTPLRSTVVFGGVDMAPQTA 137
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
A + ++IATP +L H++ + V+ + +V+DEAD + D GF P++ +I+N L
Sbjct: 138 TLRAGVEIVIATPGRLLDHVQQKTVNLSQTQILVMDEADRMLDMGFLPDLQRIINLL 194
>gi|344171941|emb|CCA84567.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia syzygii R24]
Length = 481
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 105/179 (58%), Gaps = 3/179 (1%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F GL ++++A+ + G P+ IQ IP V+ G+ V+ ++ +G+G+T + LP++Q
Sbjct: 2 TFDTFGLHPDILRALAESGYTRPTPIQAAAIPVVVAGRDVMGAAQTGTGKTAGFSLPIIQ 61
Query: 202 MLRRDEALLPMKPMHP-RAIVLCTTEESADQGF-HMAKFISHCARLDSSMENGGVSSKAL 259
L + HP RA++L T E ADQ + ++AK+ + A L S++ GGV
Sbjct: 62 NLLPEANTSASPARHPVRALILTPTRELADQVYDNVAKYGKYTA-LRSAVVFGGVDMNPQ 120
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ + +L+ATP +L H++ R+V+ +R +VLDEAD + D GF P++ +I+N L
Sbjct: 121 TEQLRRGVEILVATPGRLLDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIINLL 179
>gi|84393955|ref|ZP_00992695.1| ATP-dependent RNA helicase SrmB [Vibrio splendidus 12B01]
gi|84375399|gb|EAP92306.1| ATP-dependent RNA helicase SrmB [Vibrio splendidus 12B01]
Length = 421
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 101/177 (57%), Gaps = 5/177 (2%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F EL L E++KA+++MG P++IQ IP L+G+ V+ S+ +G+G+T +++LP
Sbjct: 1 MIRTFAELDLNQELLKAIDEMGYERPTQIQAEAIPQALDGRDVLASAPTGTGKTASFVLP 60
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
+Q L P K P R ++L T E A Q A+ ++ L+ GGV +
Sbjct: 61 ALQYLLD----FPRKKSGPARMLILTPTRELAMQITEQARELAKYTSLNIFTITGGVMYQ 116
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
D+ + +++ATP ++++IE C I ++VLDEAD + D GFGP + ++
Sbjct: 117 EHADILSTTQDIVVATPGRLMEYIEGERFDCRAIEWLVLDEADRMLDMGFGPVVDRL 173
>gi|16272370|ref|NP_438583.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae Rd KW20]
gi|260580515|ref|ZP_05848343.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae RdAW]
gi|1174440|sp|P44701.1|SRMB_HAEIN RecName: Full=ATP-dependent RNA helicase SrmB homolog
gi|1573394|gb|AAC22078.1| ATP-dependent RNA helicase (srmB) [Haemophilus influenzae Rd KW20]
gi|260092857|gb|EEW76792.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae RdAW]
Length = 439
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 98/179 (54%), Gaps = 11/179 (6%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+S F++ L E++KA+EK G P+ IQ IPA + V+ S+ +G+G+T A+LLP
Sbjct: 3 LSQFEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEESDVLGSAPTGTGKTAAFLLPA 62
Query: 200 VQML----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS 255
+Q L RR KP PR +VL T E A Q A+ ++ L+ + GGV+
Sbjct: 63 LQHLLDYPRR-------KPGPPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVA 115
Query: 256 SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+ DV N +++ATP +LQ+I++ N C + ++ DEAD + GFG + KI
Sbjct: 116 YQNHGDVFNTNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKI 174
>gi|186476836|ref|YP_001858306.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
phymatum STM815]
gi|184193295|gb|ACC71260.1| DEAD/DEAH box helicase domain protein [Burkholderia phymatum
STM815]
Length = 482
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 105/186 (56%), Gaps = 15/186 (8%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
++F + GL A+++KA+ + G P+ IQ IP VL G+ V+ ++ +G+G+T ++ LP++
Sbjct: 11 ATFDQFGLHADILKAIAEQGYTTPTPIQAKAIPVVLGGRDVMGAAQTGTGKTASFSLPII 70
Query: 201 QMLRRDEALLPMK------PMHP-RAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENG 252
Q L LP+ HP RA++L T E ADQ ++ + H A L S++ G
Sbjct: 71 QRL------LPLANTSASPARHPVRALILTPTRELADQVAANVQSYAKHTA-LRSAVVFG 123
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
GV + +LIATP +L H++ + + ++ +VLDEAD + D GF P++
Sbjct: 124 GVDMNPQSAELRRGVEILIATPGRLLDHVQQKTANLGQVQMLVLDEADRMLDMGFLPDLQ 183
Query: 313 KILNPL 318
+ILN L
Sbjct: 184 RILNLL 189
>gi|424902637|ref|ZP_18326153.1| ATP-dependent RNA helicase 2 [Burkholderia thailandensis MSMB43]
gi|390933012|gb|EIP90412.1| ATP-dependent RNA helicase 2 [Burkholderia thailandensis MSMB43]
Length = 482
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 75/242 (30%), Positives = 126/242 (52%), Gaps = 16/242 (6%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V ++F + GL AE++KA+ + G P+ IQ IP VL+G+ V+ ++ +G+G+T ++ LP
Sbjct: 9 VDATFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLP 68
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSS 256
++Q L HP RA++L T E ADQ ++ + H L S++ GGV
Sbjct: 69 IIQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTP-LRSAVVFGGVDM 127
Query: 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ +LIATP +L H++ + + ++ +VLDEAD + D GF P++ +ILN
Sbjct: 128 NPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILN 187
Query: 317 PLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLM---ECLE--RDNAGKVTAMLLEMDQ 371
L QT+L +A + + + S+ + + +E R NA T + D
Sbjct: 188 LLPKER--------QTLLFSATFSPEIKKLASTYLRDPQTIEVARSNAAASTVTQIVYDV 239
Query: 372 AE 373
AE
Sbjct: 240 AE 241
>gi|91782534|ref|YP_557740.1| ATP-dependent RNA helicase 2 [Burkholderia xenovorans LB400]
gi|91686488|gb|ABE29688.1| Putative ATP-dependent RNA helicase 2 [Burkholderia xenovorans
LB400]
Length = 491
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 105/180 (58%), Gaps = 3/180 (1%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
S+F + GL +++KAV++ G +P+ IQ IP VL G+ ++ ++ +G+G+T ++ LP++
Sbjct: 11 STFDQFGLAPDILKAVKESGYTIPTPIQEQAIPVVLAGRDMMGAAQTGTGKTASFSLPII 70
Query: 201 QMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSSKA 258
Q L + HP RA++L T E ADQ ++ + H A L S++ GGV
Sbjct: 71 QRLLPQASTSASPARHPVRALILTPTRELADQVAANVQAYAKHTA-LRSAVVFGGVDMNP 129
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ + +LIATP +L H++ + + ++ +VLDEAD + D GF P++ +ILN L
Sbjct: 130 QSEQLRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLL 189
>gi|417948797|ref|ZP_12591939.1| ATP-dependent RNA helicase [Vibrio splendidus ATCC 33789]
gi|342809160|gb|EGU44284.1| ATP-dependent RNA helicase [Vibrio splendidus ATCC 33789]
Length = 423
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 99/185 (53%), Gaps = 2/185 (1%)
Query: 137 AEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYL 196
+E SF +LGL ++ +E++ P+ +Q IP VL GK V+ + +G+G+T A+
Sbjct: 2 SESTKSFNQLGLSDHLLATLEELNFTAPTSVQEQAIPLVLEGKDVLAGAQTGTGKTAAFG 61
Query: 197 LPLVQ-MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS 255
LP++Q +L + ++P P RA+VL T E A Q F + L + GGVS
Sbjct: 62 LPIIQRLLATKDNVIP-NPKLVRALVLVPTRELAQQVFDNVSSYAKGTDLKVVVAYGGVS 120
Query: 256 SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
K D +L+ATP ++ H+ +N+ +VLDEAD + D GF P+I +IL
Sbjct: 121 MKVQTDNLRQGADILVATPGRLIDHMFTKNIMLSQTEVLVLDEADRMLDMGFMPDIKRIL 180
Query: 316 NPLKD 320
+ + D
Sbjct: 181 SRMND 185
>gi|91787410|ref|YP_548362.1| DEAD/DEAH box helicase [Polaromonas sp. JS666]
gi|91696635|gb|ABE43464.1| DEAD/DEAH box helicase-like protein [Polaromonas sp. JS666]
Length = 492
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 99/181 (54%), Gaps = 1/181 (0%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
+ SSF L L + +AV +MG + IQ IP VL GK V+ ++ +G+G+T A+ LP
Sbjct: 1 MTSSFSNLSLAEPLARAVAEMGYETMTPIQEQAIPVVLQGKDVMGAAQTGTGKTAAFSLP 60
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
L+Q + + E HP RA+VL T E A Q K + L S++ GG+ K
Sbjct: 61 LLQRMLKHENASTSPARHPVRALVLLPTRELAVQVAEQVKLYAKHTNLRSAVVFGGMDMK 120
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNP 317
+ +L+ATP +L HIE +N + + YVVLDEAD + D GF P++ +IL+
Sbjct: 121 PQTLELKQGVEVLVATPGRLLDHIEAKNTVLNQVEYVVLDEADRMLDIGFLPDLQRILSY 180
Query: 318 L 318
L
Sbjct: 181 L 181
>gi|319944378|ref|ZP_08018652.1| ATP-dependent RNA helicase RhlE [Lautropia mirabilis ATCC 51599]
gi|319742339|gb|EFV94752.1| ATP-dependent RNA helicase RhlE [Lautropia mirabilis ATCC 51599]
Length = 546
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 99/184 (53%), Gaps = 1/184 (0%)
Query: 134 GSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTL 193
G+ +F + GL +++KAV G P+ IQ IP V+ G V+ ++ +G+G+T
Sbjct: 11 GAQEPATVTFSDFGLHPDVLKAVTAAGYTKPTPIQAKAIPVVMAGHDVMAAAQTGTGKTA 70
Query: 194 AYLLPLVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENG 252
+ LP++ +L + HP RA+++ T E ADQ K L S+ G
Sbjct: 71 GFALPIINVLMPSASHSASPARHPVRALIIAPTRELADQIHDNVKTYIQFTPLRSAAVFG 130
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
GV + + A + +LIATP +L H++ ++V+ ++ +VLDEAD + D GF P+I
Sbjct: 131 GVDMQPQTNALRAGVEILIATPGRLLDHVQQKSVNLSQVQLLVLDEADRMLDMGFLPDIQ 190
Query: 313 KILN 316
+I+N
Sbjct: 191 RIIN 194
>gi|89901799|ref|YP_524270.1| DEAD/DEAH box helicase-like protein [Rhodoferax ferrireducens T118]
gi|89346536|gb|ABD70739.1| DEAD/DEAH box helicase-like [Rhodoferax ferrireducens T118]
Length = 506
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 99/178 (55%), Gaps = 1/178 (0%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F +L L A + +AV MG + IQ IP VL G+ V+ ++ +G+G+T A+ LPL+Q
Sbjct: 16 AFAQLQLAAPLARAVADMGYETMTPIQAQAIPVVLQGRDVMGAAQTGTGKTAAFALPLLQ 75
Query: 202 MLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE 260
+ + E HP RA+VL T E ADQ K + L S++ GG+ K
Sbjct: 76 RMLKHENSSTSPARHPVRALVLLPTRELADQVAQAIKDYAVHTNLRSAVVFGGMDMKPQT 135
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +L+ATP +L HIE +N + + YVVLDEAD + D GF P++ +IL+ L
Sbjct: 136 LELKKGVEVLVATPGRLLDHIEAKNCVLNQVEYVVLDEADRMLDIGFLPDLQRILSYL 193
>gi|409407327|ref|ZP_11255778.1| ATP-dependent RNA helicase [Herbaspirillum sp. GW103]
gi|386433078|gb|EIJ45904.1| ATP-dependent RNA helicase [Herbaspirillum sp. GW103]
Length = 487
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 98/177 (55%), Gaps = 1/177 (0%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F++ GL +++KA+ + G P+ IQ IP VL G+ V+ ++ +G+G+T + LP++Q
Sbjct: 18 FEDFGLSPDILKALSEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQR 77
Query: 203 LRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L + HP RA++L T E ADQ K S L S++ GGV
Sbjct: 78 LLAHASHSASPARHPVRALILTPTRELADQVAENVKAYSRFTPLRSTVVFGGVDMAPQTA 137
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
A + ++IATP +L H++ + V+ + +V+DEAD + D GF P++ +I+N L
Sbjct: 138 TLRAGVEIVIATPGRLLDHVQQKTVNLSQTQILVMDEADRMLDMGFLPDLQRIINLL 194
>gi|332529740|ref|ZP_08405694.1| DEAD/DEAH box helicase-like protein [Hylemonella gracilis ATCC
19624]
gi|332040761|gb|EGI77133.1| DEAD/DEAH box helicase-like protein [Hylemonella gracilis ATCC
19624]
Length = 506
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 97/177 (54%), Gaps = 1/177 (0%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
+ +L L + +AV MG + IQ IP VL G+ V+ ++ +G+G+T A+ LPL+Q
Sbjct: 20 YADLTLAEPLKRAVADMGYETMTPIQAQAIPVVLAGQDVMGAAQTGTGKTAAFSLPLLQR 79
Query: 203 LRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L + E HP RA+VL T E ADQ K + L S++ GG+ K
Sbjct: 80 LLKHENASTSPARHPVRALVLLPTRELADQVAQQVKMYAKYTHLRSAVVFGGMDMKPQTL 139
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +L+ATP +L HIE +N + + YVVLDEAD + D GF P++ +IL+ L
Sbjct: 140 ELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSHL 196
>gi|195108365|ref|XP_001998763.1| GI24146 [Drosophila mojavensis]
gi|193915357|gb|EDW14224.1| GI24146 [Drosophila mojavensis]
Length = 829
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 116/223 (52%), Gaps = 22/223 (9%)
Query: 132 SSGSNAEVVSS---------FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVV 182
+SG N +++ + FQ LGL E++K + K G VP+ IQ IP +L G+ VV
Sbjct: 20 TSGGNDDILKTKPKSKKSGGFQSLGLGFELLKGITKRGYKVPTPIQRKTIPLILEGRDVV 79
Query: 183 LSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHC 242
+ +GSG+T +L+PL + L+R E P K RA++L T E A Q + K +
Sbjct: 80 AMAKTGSGKTACFLIPLFEKLQRRE---PTKGA--RALILSPTRELAVQTYKFIKDLGRF 134
Query: 243 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 302
L + + GG S + + +++ATP L + ++ + I YVV DEAD L
Sbjct: 135 MELKTILVLGGDSMDSQFSAIHTCPDIIVATPGRFLHLCVEMDLKLNSIEYVVFDEADRL 194
Query: 303 FDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 345
F+ GFG ++++ L+ L S QT++ +A + ++L E
Sbjct: 195 FEMGFGEQLNETLHRLPSSR--------QTVMFSATLPKLLVE 229
>gi|385203300|ref|ZP_10030170.1| DNA/RNA helicase, superfamily II [Burkholderia sp. Ch1-1]
gi|385183191|gb|EIF32465.1| DNA/RNA helicase, superfamily II [Burkholderia sp. Ch1-1]
Length = 491
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 105/180 (58%), Gaps = 3/180 (1%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
S+F + GL +++KAV++ G +P+ IQ IP VL G+ ++ ++ +G+G+T ++ LP++
Sbjct: 11 STFDQFGLAPDILKAVKESGYTIPTPIQEQAIPVVLAGRDMMGAAQTGTGKTASFSLPII 70
Query: 201 QMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSSKA 258
Q L + HP RA++L T E ADQ ++ + H A L S++ GGV
Sbjct: 71 QRLLPQASTSASPARHPVRALILTPTRELADQVAANVQAYAKHTA-LRSAVVFGGVDMNP 129
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ + +LIATP +L H++ + + ++ +VLDEAD + D GF P++ +ILN L
Sbjct: 130 QSEQLRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLL 189
>gi|319788058|ref|YP_004147533.1| DEAD/DEAH box helicase [Pseudoxanthomonas suwonensis 11-1]
gi|317466570|gb|ADV28302.1| DEAD/DEAH box helicase domain protein [Pseudoxanthomonas suwonensis
11-1]
Length = 463
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 102/200 (51%), Gaps = 7/200 (3%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL +++A+ + G P+ IQ IP L G ++ + +G+G+T A+ LPL+Q
Sbjct: 2 SFESLGLAPFLLRALAEQGYETPTPIQQQAIPLALAGHDLLAGAQTGTGKTAAFGLPLLQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L + + P PRA+VL T E A Q + S R+ S++ GGV D
Sbjct: 62 YLGTEPQKVGPGPRKPRALVLTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLD 121
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDS 321
+ M+IA P ++ HIE R++ I ++LDEAD + D GF P I +IL L
Sbjct: 122 SLRRGVDMVIACPGRLIDHIERRSIDLSGIEVLILDEADRMLDMGFLPSIKRILAKLPK- 180
Query: 322 ALKSNGQGFQTILVTAAIAE 341
Q QT+L +A E
Sbjct: 181 ------QNRQTLLFSATFPE 194
>gi|295675961|ref|YP_003604485.1| DEAD/DEAH box helicase [Burkholderia sp. CCGE1002]
gi|295435804|gb|ADG14974.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002]
Length = 484
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 102/179 (56%), Gaps = 3/179 (1%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F + GL +++KA+++ G P+ IQ IP VL G+ V+ ++ +G+G+T ++ LP++Q
Sbjct: 12 TFDQFGLAPDILKAIKESGYTSPTPIQAKAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 202 MLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSSKAL 259
L HP RA++L T E ADQ ++ + H A L S++ GGV
Sbjct: 72 RLLPQANTSASPARHPVRALILTPTRELADQVAANVQAYAKHTA-LRSAVVFGGVDMNPQ 130
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
D + +LIATP +L H++ + + ++ +VLDEAD + D GF P++ +ILN L
Sbjct: 131 SDQLRRGVEILIATPGRLLDHVQQKTANLGQVQMLVLDEADRMLDMGFLPDLQRILNLL 189
>gi|410614834|ref|ZP_11325872.1| cold-shock DEAD box protein A homolog [Glaciecola psychrophila 170]
gi|410165683|dbj|GAC39761.1| cold-shock DEAD box protein A homolog [Glaciecola psychrophila 170]
Length = 420
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 116/224 (51%), Gaps = 16/224 (7%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F++L L ++I AV +G P+ IQ + IP +NGK ++ S+ +G+G+T A+LLP Q
Sbjct: 2 FEQLELDDDLIHAVTDLGYKEPTSIQSLVIPEAMNGKDILASAPTGTGKTAAFLLPACQF 61
Query: 203 L----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS-HCARLDSSMENGGVSSK 257
+ RR +P R ++L T E A Q F AK IS + + + GG++
Sbjct: 62 ILDYPRR-------QPGSTRILILTPTRELALQIFEQAKAISKYVPHIACGVITGGINYG 114
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNP 317
D+ + +L+ATP + +HIE + C DI ++LDEAD + D GF P +++I
Sbjct: 115 TDRDLLEKNLDILVATPGRLFEHIEKESFDCRDIECLILDEADRMLDMGFSPVVNQI--- 171
Query: 318 LKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAGK 361
++ + F L IA E L+ +E LE D++ K
Sbjct: 172 AAEARWRKQTMLFSATLEGTGIARFSDELLNDPVE-LEADSSRK 214
>gi|358636156|dbj|BAL23453.1| ATP-dependent RNA helicase [Azoarcus sp. KH32C]
Length = 480
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 102/182 (56%), Gaps = 3/182 (1%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF +LGL E+++AV G P+ IQ IP VL G+ ++ + +G+G+T + LPL+
Sbjct: 2 SFADLGLIPELLRAVADTGYTTPTPIQQQAIPVVLAGRDIMGGAQTGTGKTAGFTLPLLN 61
Query: 202 MLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA-L 259
L R + HP RA++L T E A Q F K S L ++ GGV K +
Sbjct: 62 RLARHASASTSPARHPVRALILAPTRELAMQVFESVKTYSKYVPLRTTCIYGGVDMKPQI 121
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319
+++ N + +++ATP +L H++ + + + + +VLDEAD + D GF P+I +IL+ L
Sbjct: 122 QELRNG-VEIVVATPGRLLDHVQQKTIVLNQVEMLVLDEADRMLDMGFIPDIRRILDLLP 180
Query: 320 DS 321
S
Sbjct: 181 AS 182
>gi|194864582|ref|XP_001971010.1| GG14669 [Drosophila erecta]
gi|190652793|gb|EDV50036.1| GG14669 [Drosophila erecta]
Length = 827
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 108/203 (53%), Gaps = 13/203 (6%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
FQ +GL E+IK + K G VP+ IQ IP +L G+ VV + +GSG+T +L+PL +
Sbjct: 41 FQSMGLGFELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEK 100
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDV 262
L+R E P K RA++L T E A Q + K + L S + GG S +
Sbjct: 101 LQRRE---PTKGA--RALILSPTRELAVQTYKFIKELGRFMELKSILVLGGDSMDSQFSA 155
Query: 263 SNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSA 322
+ +++ATP L + ++ + I YVV DEAD LF+ GFG ++++ L+ L S
Sbjct: 156 IHTCPDVIVATPGRFLHLCVEMDLKLNSIEYVVFDEADRLFEMGFGEQLNETLHRLPSSR 215
Query: 323 LKSNGQGFQTILVTAAIAEMLGE 345
QT++ +A + ++L E
Sbjct: 216 --------QTVMFSATLPKLLVE 230
>gi|430809219|ref|ZP_19436334.1| RNA helicase [Cupriavidus sp. HMR-1]
gi|429498363|gb|EKZ96873.1| RNA helicase [Cupriavidus sp. HMR-1]
Length = 498
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 106/185 (57%), Gaps = 15/185 (8%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F+ GL +++A+ + G P+ IQ IP VL GK V+ ++ +G+G+T + LP++Q
Sbjct: 16 TFESFGLDPRVLRALTEQGYTKPTPIQAQAIPVVLLGKDVMGAAQTGTGKTAGFALPIIQ 75
Query: 202 MLRRDEALLPMK------PMHP-RAIVLCTTEESADQGF-HMAKFISHCARLDSSMENGG 253
L LP+ HP RA++L T E ADQ + ++A++ H L S++ GG
Sbjct: 76 RL------LPLANASASPARHPVRALMLTPTRELADQVYDNVARYAKHTD-LRSTVVFGG 128
Query: 254 VSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISK 313
V D + +L+ATP +L H++ ++V+ ++ +VLDEAD + D GF P++ +
Sbjct: 129 VDMNPQTDALRRGVEILVATPGRLLDHVQQKSVNLSQVQMLVLDEADRMLDMGFLPDLQR 188
Query: 314 ILNPL 318
I+N L
Sbjct: 189 IINLL 193
>gi|28575014|ref|NP_612028.4| CG32344 [Drosophila melanogaster]
gi|18447311|gb|AAL68229.1| LD28101p [Drosophila melanogaster]
gi|23092697|gb|AAN11439.1| CG32344 [Drosophila melanogaster]
gi|220947558|gb|ACL86322.1| CG32344-PA [synthetic construct]
Length = 827
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 108/203 (53%), Gaps = 13/203 (6%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
FQ +GL E+IK + K G VP+ IQ IP +L G+ VV + +GSG+T +L+PL +
Sbjct: 41 FQSMGLGFELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEK 100
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDV 262
L+R E P K RA++L T E A Q + K + L S + GG S +
Sbjct: 101 LQRRE---PTKGA--RALILSPTRELAVQTYKFIKELGRFMELKSILVLGGDSMDSQFSA 155
Query: 263 SNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSA 322
+ +++ATP L + ++ + I YVV DEAD LF+ GFG ++++ L+ L S
Sbjct: 156 IHTCPDVIVATPGRFLHLCVEMDLKLNSIEYVVFDEADRLFEMGFGEQLNETLHRLPSSR 215
Query: 323 LKSNGQGFQTILVTAAIAEMLGE 345
QT++ +A + ++L E
Sbjct: 216 --------QTVMFSATLPKLLVE 230
>gi|343492178|ref|ZP_08730551.1| ATP-dependent RNA helicase SrmB [Vibrio nigripulchritudo ATCC
27043]
gi|342827518|gb|EGU61906.1| ATP-dependent RNA helicase SrmB [Vibrio nigripulchritudo ATCC
27043]
Length = 409
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 100/177 (56%), Gaps = 5/177 (2%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F EL L +++A+E+MG P++IQ IP L+G+ V+ S+ +G+G+T A+++P
Sbjct: 1 MIRTFAELELDPNLLEAIEEMGYERPTQIQAEAIPQALDGRDVLASAPTGTGKTAAFVIP 60
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
+Q L+ P + P R ++L T E A Q A+ ++ L GGV +
Sbjct: 61 ALQYLQD----FPRRKAGPARILILTPTRELAMQVTDQARALAKYTNLKIFTITGGVQYQ 116
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
D+ + +++ATP ++++IE C I ++VLDEAD + D GFGP + ++
Sbjct: 117 EHADILSTTQDIVVATPGRLMEYIEAERFDCRAIEWLVLDEADRMLDMGFGPTVDRL 173
>gi|195583246|ref|XP_002081434.1| GD25714 [Drosophila simulans]
gi|194193443|gb|EDX07019.1| GD25714 [Drosophila simulans]
Length = 827
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 108/203 (53%), Gaps = 13/203 (6%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
FQ +GL E+IK + K G VP+ IQ IP +L G+ VV + +GSG+T +L+PL +
Sbjct: 41 FQSMGLGFELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEK 100
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDV 262
L+R E P K RA++L T E A Q + K + L S + GG S +
Sbjct: 101 LQRRE---PTKGA--RALILSPTRELAVQTYKFIKELGRFMELKSILVLGGDSMDSQFSA 155
Query: 263 SNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSA 322
+ +++ATP L + ++ + I YVV DEAD LF+ GFG ++++ L+ L S
Sbjct: 156 IHTCPDVIVATPGRFLHLCVEMDLKLNSIEYVVFDEADRLFEMGFGEQLNETLHRLPSSR 215
Query: 323 LKSNGQGFQTILVTAAIAEMLGE 345
QT++ +A + ++L E
Sbjct: 216 --------QTVMFSATLPKLLVE 230
>gi|449017358|dbj|BAM80760.1| similar to ATP-dependent RNA helicase [Cyanidioschyzon merolae
strain 10D]
Length = 566
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 113/204 (55%), Gaps = 22/204 (10%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
+ SSF LG+ E++ A++ +G+ P+ IQ +PA+L G SV++ S +GSG+TLAYLLP
Sbjct: 78 LTSSFASLGVFPELVTALDAVGIQTPTAIQTRAVPAILGGASVIIGSATGSGKTLAYLLP 137
Query: 199 LVQMLRRDEALL------------------PM-KPMHPRAIVLCTTEESADQGFHMAKFI 239
+VQ L+ +E + P+ +P PRA+V+ T E A+Q + K +
Sbjct: 138 IVQRLKSEEQQVVSEMQTEEAAEMMRRGRHPLRRPGAPRALVITPTRELAEQVLGVCKHL 197
Query: 240 SHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 299
SH ++ ++ GV + P+ +LI T +LQ ++++ + ++ VVLDE
Sbjct: 198 SHYIKIRAA-SGLGVRRIVRAQLEEQPVDILITTSGRLLQLLDEQLIRLRSVQTVVLDEV 256
Query: 300 DTLF--DRGFGPEISKILNPLKDS 321
DTL + GF +I +I+ +++
Sbjct: 257 DTLLLDEGGFHDDIRQIMGKARNT 280
>gi|195336302|ref|XP_002034780.1| GM14284 [Drosophila sechellia]
gi|194127873|gb|EDW49916.1| GM14284 [Drosophila sechellia]
Length = 827
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 108/203 (53%), Gaps = 13/203 (6%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
FQ +GL E+IK + K G VP+ IQ IP +L G+ VV + +GSG+T +L+PL +
Sbjct: 41 FQSMGLGFELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEK 100
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDV 262
L+R E P K RA++L T E A Q + K + L S + GG S +
Sbjct: 101 LQRRE---PTKGA--RALILSPTRELAVQTYKFIKELGRFMELKSILVLGGDSMDSQFSA 155
Query: 263 SNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSA 322
+ +++ATP L + ++ + I YVV DEAD LF+ GFG ++++ L+ L S
Sbjct: 156 IHTCPDVIVATPGRFLHLCVEMDLKLNSIEYVVFDEADRLFEMGFGEQLNETLHRLPSSR 215
Query: 323 LKSNGQGFQTILVTAAIAEMLGE 345
QT++ +A + ++L E
Sbjct: 216 --------QTVMFSATLPKLLVE 230
>gi|330817865|ref|YP_004361570.1| ATP-dependent RNA helicase [Burkholderia gladioli BSR3]
gi|327370258|gb|AEA61614.1| Putative ATP-dependent RNA helicase 2 [Burkholderia gladioli BSR3]
Length = 485
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 111/191 (58%), Gaps = 7/191 (3%)
Query: 132 SSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGR 191
S + V ++F + GL +++KA+ + G P+ IQ IP VL+G+ V+ ++ +G+G+
Sbjct: 2 SDSAATSVDATFDQFGLAPDILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGK 61
Query: 192 TLAYLLPLVQML--RRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKFISHCARLDS 247
T ++ LP++Q L + + + P + HP RA++L T E ADQ ++ + H A L S
Sbjct: 62 TASFSLPIIQRLLPQANSSASPAR--HPVRALILTPTRELADQVAANVHAYAKHTA-LRS 118
Query: 248 SMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGF 307
++ GGV + + +LIATP +L H++ + + ++ +VLDEAD + D GF
Sbjct: 119 AVVFGGVDMNSQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQMLVLDEADRMLDMGF 178
Query: 308 GPEISKILNPL 318
P++ +ILN L
Sbjct: 179 LPDLQRILNLL 189
>gi|375111191|ref|ZP_09757402.1| DEAD/DEAH box helicase [Alishewanella jeotgali KCTC 22429]
gi|374568733|gb|EHR39905.1| DEAD/DEAH box helicase [Alishewanella jeotgali KCTC 22429]
Length = 449
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 111/200 (55%), Gaps = 10/200 (5%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ FQ++GL ++++V+ +G P+EIQ IPAV+ G+ +++SS +GSG+TLAYLLP+
Sbjct: 5 ILQFQDMGLDPRLLRSVQHLGFARPTEIQQEAIPAVMVGRDLLVSSKTGSGKTLAYLLPM 64
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
+Q L + AL RA++L T E A Q + + + + + GG +
Sbjct: 65 MQRLLKSRAL---SKQDARALILTPTRELAKQVYAQLRLFVANTPVTAVLLVGGENFNDQ 121
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319
E + +++ATP + H+E ++V + ++LDEAD + D GF P+++ I+N
Sbjct: 122 EKLLKRQPDIIVATPGRFVDHLEHKSVFLQGLEMLILDEADRMLDLGFLPQLT-IINKAA 180
Query: 320 DSALKSNGQGFQTILVTAAI 339
L+ QT+L +A +
Sbjct: 181 AHRLR------QTLLFSATL 194
>gi|194364258|ref|YP_002026868.1| DEAD/DEAH box helicase [Stenotrophomonas maltophilia R551-3]
gi|194347062|gb|ACF50185.1| DEAD/DEAH box helicase domain protein [Stenotrophomonas maltophilia
R551-3]
Length = 471
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 102/198 (51%), Gaps = 7/198 (3%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL +++A+ + G P+ IQ IP VL G+ ++ + +G+G+T A+ LPL+Q
Sbjct: 2 SFESLGLAPFLLRALAEQGYETPTPIQQQAIPLVLAGRDLLAGAQTGTGKTAAFGLPLLQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L + P PRA++L T E A Q + S R+ S+ GGV D
Sbjct: 62 HLGTASQEVRTGPRKPRALILAPTRELATQVHDSLRGYSKYLRIPSACIYGGVGMGNQLD 121
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDS 321
+ + +L+A P ++ H+E R++ I +VLDEAD + D GF P I +IL L
Sbjct: 122 ILRRGVDLLVACPGRLIDHLERRSIDLSGIELLVLDEADRMLDMGFLPSIKRILAKLPK- 180
Query: 322 ALKSNGQGFQTILVTAAI 339
Q QT+L +A
Sbjct: 181 ------QNRQTLLFSATF 192
>gi|398803769|ref|ZP_10562787.1| DNA/RNA helicase, superfamily II [Polaromonas sp. CF318]
gi|398096022|gb|EJL86353.1| DNA/RNA helicase, superfamily II [Polaromonas sp. CF318]
Length = 481
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 99/181 (54%), Gaps = 1/181 (0%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
+ SSF L L + +AV +MG + IQ IP VL GK V+ ++ +G+G+T A+ LP
Sbjct: 1 MTSSFSNLSLAEPLARAVAEMGYETMTPIQEQAIPVVLQGKDVMGAAQTGTGKTAAFSLP 60
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
L+Q + + E HP RA+VL T E A Q + + L S++ GG+ K
Sbjct: 61 LLQRMMKHENPSTSPARHPVRALVLLPTRELAVQVAQQVELYAKYTNLRSTVVFGGMDMK 120
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNP 317
+ +L+ATP +L HIE +N + + YVVLDEAD + D GF P++ +IL+
Sbjct: 121 PQTAELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSY 180
Query: 318 L 318
L
Sbjct: 181 L 181
>gi|167580312|ref|ZP_02373186.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis TXDOH]
gi|167618435|ref|ZP_02387066.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis Bt4]
gi|257139776|ref|ZP_05588038.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
Length = 481
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 73/242 (30%), Positives = 124/242 (51%), Gaps = 16/242 (6%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V ++F + GL AE+++A+ + G P+ IQ IP VL+G+ V+ ++ +G+G+T ++ LP
Sbjct: 9 VDATFDQFGLAAEILRAIAEQGYTTPTPIQANAIPVVLSGRDVMGAAQTGTGKTASFSLP 68
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSS 256
++Q L HP RA++L T E ADQ ++ + H L S++ GGV
Sbjct: 69 IIQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTP-LRSAVVFGGVDM 127
Query: 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ +LIATP +L H++ + + ++ +VLDEAD + D GF P++ +ILN
Sbjct: 128 NPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILN 187
Query: 317 PLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMEC-----LERDNAGKVTAMLLEMDQ 371
L QT+L +A + + + S+ + + R NA T + D
Sbjct: 188 LLPKER--------QTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDV 239
Query: 372 AE 373
AE
Sbjct: 240 AE 241
>gi|399017820|ref|ZP_10720009.1| DNA/RNA helicase, superfamily II [Herbaspirillum sp. CF444]
gi|398102587|gb|EJL92767.1| DNA/RNA helicase, superfamily II [Herbaspirillum sp. CF444]
Length = 504
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 99/178 (55%), Gaps = 3/178 (1%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F++ GL +++KA+ G P+ IQ IP VL G+ V+ ++ +G+G+T + LP++Q+
Sbjct: 18 FEDFGLSPDILKALSAQGYIHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQL 77
Query: 203 LRRDEALLPMKPM-HP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE 260
L A M P HP RA++L T E ADQ K S L S++ GGV
Sbjct: 78 LLA-HASTSMSPARHPVRALILTPTRELADQVADNVKAYSRFTPLRSTVVFGGVDMAPQT 136
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ ++IATP +L H++ + V+ + +V+DEAD + D GF P++ +I+N L
Sbjct: 137 ATLRGGVEIVIATPGRLLDHVQQKTVNLSQTQILVMDEADRMLDMGFLPDLQRIINLL 194
>gi|394988591|ref|ZP_10381426.1| hypothetical protein SCD_00993 [Sulfuricella denitrificans skB26]
gi|393791970|dbj|GAB71065.1| hypothetical protein SCD_00993 [Sulfuricella denitrificans skB26]
Length = 476
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 78/240 (32%), Positives = 125/240 (52%), Gaps = 20/240 (8%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL AE+++AV G P+ IQ IP VL G+ ++ + +G+G+T + LPL+Q
Sbjct: 2 SFENLGLSAELLRAVTDQGYTEPTPIQAQAIPVVLEGRDLMGGAQTGTGKTAGFTLPLLQ 61
Query: 202 ML--RRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
+L + + P K HP RA++L T E A Q + L S++ GGV+ K
Sbjct: 62 LLSIHANTSTSPAK--HPVRALILTPTRELAAQVEESVQTYGKYLPLKSTVVFGGVNIKE 119
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +L+ATP +L H+E + V+ + +VLDEAD + D GF P+I +I+ L
Sbjct: 120 QIAALKGGVEILVATPGRLLDHVEQKTVNLSKVEILVLDEADRMLDMGFLPDIKRIIALL 179
Query: 319 KDSALKSNGQGFQTILVTAAIA---EMLGEQLSS---LMECLERDNAGK-VTAMLLEMDQ 371
Q +L +A A + L +QL + L+E R+ A + VT ++ +D
Sbjct: 180 PAKR--------QNLLFSATFAGEIKKLSDQLLTDPVLIEVARRNAASENVTQVIYPVDH 231
>gi|15836797|ref|NP_297485.1| ATP-dependent RNA helicase [Xylella fastidiosa 9a5c]
gi|9104994|gb|AAF83005.1|AE003873_2 ATP-dependent RNA helicase [Xylella fastidiosa 9a5c]
Length = 446
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 72/216 (33%), Positives = 114/216 (52%), Gaps = 10/216 (4%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F+ LGL +++A+ + G +P+ IQ IP L G ++ ++ +G+G+T A+ LP++Q
Sbjct: 2 NFETLGLLPSLLRALSEQGYEIPTPIQQQAIPLALAGHDLLAAAQTGTGKTAAFGLPVLQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L A + PRA+VL T E A Q + + + R+ S++ GGV D
Sbjct: 62 RLM--AASSNVGAGKPRALVLTPTRELATQVYDSLRGYAKYQRVSSAVIYGGVGMGNQLD 119
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDS 321
V + +LIA P ++ HIE R+V + +VLDEAD + D GF P I +IL L
Sbjct: 120 VLRRGVDLLIACPGRLIDHIERRSVDLSGVGILVLDEADRMLDMGFLPSIKRILGKLPR- 178
Query: 322 ALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERD 357
Q QT+L +A AE + +QL+ C R+
Sbjct: 179 ------QNRQTLLFSATFAEPI-KQLALEFMCRPRE 207
>gi|167823349|ref|ZP_02454820.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 9]
gi|226195327|ref|ZP_03790916.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pakistan 9]
gi|225932529|gb|EEH28527.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pakistan 9]
Length = 478
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 74/242 (30%), Positives = 124/242 (51%), Gaps = 16/242 (6%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V ++F + GL AE++KA+ + G P+ IQ IP VL+G+ V+ ++ +G+G+T ++ LP
Sbjct: 9 VDATFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLP 68
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSS 256
++Q L HP RA++L T E ADQ ++ + H L S++ GGV
Sbjct: 69 IIQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTP-LRSAVVFGGVDM 127
Query: 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ +LIATP +L H++ + + ++ +VLDEAD + D GF P++ +ILN
Sbjct: 128 NPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILN 187
Query: 317 PLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMEC-----LERDNAGKVTAMLLEMDQ 371
L QT+L +A + + + S+ + + R NA T + D
Sbjct: 188 LLPKER--------QTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDV 239
Query: 372 AE 373
AE
Sbjct: 240 AE 241
>gi|159462780|ref|XP_001689620.1| predicted protein [Chlamydomonas reinhardtii]
gi|158283608|gb|EDP09358.1| predicted protein [Chlamydomonas reinhardtii]
Length = 530
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 99/159 (62%), Gaps = 8/159 (5%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNG-KSVVLSSGSGSGRTLAYLLPLV 200
+F++LGL A ++ A+ MG+ P++IQ + +PA+L + L+S +GSG+TLAYLLPLV
Sbjct: 161 TFEQLGLSAALVSALHGMGISEPTDIQSLALPALLGAPGNYFLASHTGSGKTLAYLLPLV 220
Query: 201 QMLRRDE--ALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENG--GVSS 256
++ E +P +P PR +VL T E DQ +AK + H A+ ++ N G+S
Sbjct: 221 HAIKAQEEQGFVP-RPKRPRVLVLGPTRELTDQISQVAKRLCHTAKFRAACVNAYKGMSE 279
Query: 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 295
+A + P+ +L+ATP+ LQH+ + NV+ DI+++V
Sbjct: 280 QARQLAG--PVDVLVATPTRFLQHVREGNVAYRDIQWLV 316
>gi|158513663|sp|A2YV85.2|RH29_ORYSI RecName: Full=DEAD-box ATP-dependent RNA helicase 29; Short=RNAH
Length = 851
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 128/241 (53%), Gaps = 29/241 (12%)
Query: 109 ENKPSPPQPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQ 168
E+KP P +P+++ AS+++ SG F+ +GL E+ + V G VP+ IQ
Sbjct: 26 EHKPPPGRPKRE--GEGASKKKAKSGG-------FESMGLCEEVYRGVRHKGYRVPTPIQ 76
Query: 169 CVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEES 228
+P +L G + + +GSG+T A+L+P++Q LRR +A + RA++L T +
Sbjct: 77 RKAMPLILAGHDIAAMARTGSGKTAAFLVPMIQRLRRHDAGAGI-----RALILSPTRDL 131
Query: 229 ADQGFHMAKFISHCARLDSSMENGGVSSKA-LEDVSNAPIGMLIATPSEVLQH---IEDR 284
A Q A+ + L S+ GG S ++ E+++ P ++IATP ++ H +ED
Sbjct: 132 ATQTLKFAQQLGKFTDLKISLIVGGDSMESQFEELAENP-DIIIATPGRLVHHLAEVEDL 190
Query: 285 NVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLG 344
N+ + YVV DEAD+LF G ++ IL+ L D+ QT+L +A + + L
Sbjct: 191 NLRT--VEYVVFDEADSLFSLGLIQQLHDILHKLSDTR--------QTLLFSATLPQALA 240
Query: 345 E 345
+
Sbjct: 241 D 241
>gi|189426565|ref|YP_001953742.1| DEAD/DEAH box helicase [Geobacter lovleyi SZ]
gi|189422824|gb|ACD97222.1| DEAD/DEAH box helicase domain protein [Geobacter lovleyi SZ]
Length = 436
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 101/185 (54%), Gaps = 6/185 (3%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL+ E++ A+ +G P+ IQ IP + G ++ + +G+G+T A+ LP+VQ
Sbjct: 7 SFDSLGLRPELLSAITSLGYTSPTPIQAEAIPVIFEGCDLLAGAQTGTGKTAAFALPIVQ 66
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSSKALE 260
ML E K PRA+VL T E A Q M ++ + L S+M GGV+ +A
Sbjct: 67 ML--AETTPAEKRRKPRALVLVPTRELAAQVSDEMNRYARRLS-LRSTMIYGGVTIQAQI 123
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN--PL 318
+ + + +++ATP +L H E + I+++VLDEAD + D GF EI K+ P
Sbjct: 124 ERLHRGVDIVVATPGRLLDHAERGTIDLSRIKFLVLDEADRMLDLGFIDEIKKVAEYLPA 183
Query: 319 KDSAL 323
K AL
Sbjct: 184 KHQAL 188
>gi|187923247|ref|YP_001894889.1| DEAD/DEAH box helicase [Burkholderia phytofirmans PsJN]
gi|187714441|gb|ACD15665.1| DEAD/DEAH box helicase domain protein [Burkholderia phytofirmans
PsJN]
Length = 489
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 105/180 (58%), Gaps = 3/180 (1%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
++F + GL +++KAV++ G +P+ IQ IP VL G+ ++ ++ +G+G+T ++ LP++
Sbjct: 11 ATFDQFGLAPDILKAVKESGYTIPTPIQEQAIPVVLAGRDMMGAAQTGTGKTASFSLPII 70
Query: 201 QMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSSKA 258
Q L + HP RA++L T E ADQ ++ + H A L S++ GGV
Sbjct: 71 QRLLPQASTSASPARHPVRALILTPTRELADQVAANVQAYAKHTA-LRSAVVFGGVDMNP 129
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ + +LIATP +L H++ + + ++ +VLDEAD + D GF P++ +ILN L
Sbjct: 130 QSEQLRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLL 189
>gi|260771156|ref|ZP_05880083.1| ATP-dependent RNA helicase SrmB [Vibrio furnissii CIP 102972]
gi|375130065|ref|YP_004992164.1| ATP-dependent RNA helicase SrmB [Vibrio furnissii NCTC 11218]
gi|260613753|gb|EEX38945.1| ATP-dependent RNA helicase SrmB [Vibrio furnissii CIP 102972]
gi|315179238|gb|ADT86152.1| ATP-dependent RNA helicase SrmB [Vibrio furnissii NCTC 11218]
Length = 414
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 101/177 (57%), Gaps = 5/177 (2%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F +L L +++A+E+MG P+++Q IP L+G+ V+ S+ +G+G+T A+++P
Sbjct: 1 MIKTFADLELDPNLLEAIEEMGFERPTQVQAEAIPHALDGRDVLASAPTGTGKTAAFVIP 60
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
+Q L+ P K P R ++L T E A Q A+ ++ +L+ GGV +
Sbjct: 61 ALQFLQD----FPRKKAGPARILILTPTRELAMQITEQARELAKYTKLNIFTITGGVQYQ 116
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
D+ +++ATP +L++IE C I +++LDEAD + D GFGP + ++
Sbjct: 117 EHADILATTQDIVVATPGRLLEYIEAERFDCRAIEWLILDEADRMLDMGFGPVVDRL 173
>gi|187929488|ref|YP_001899975.1| DEAD/DEAH box helicase [Ralstonia pickettii 12J]
gi|404396603|ref|ZP_10988397.1| hypothetical protein HMPREF0989_03294 [Ralstonia sp. 5_2_56FAA]
gi|187726378|gb|ACD27543.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12J]
gi|348613693|gb|EGY63272.1| hypothetical protein HMPREF0989_03294 [Ralstonia sp. 5_2_56FAA]
Length = 493
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 102/179 (56%), Gaps = 3/179 (1%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F GL ++++A+ + G P+ IQ IP V G V+ ++ +G+G+T + LP++
Sbjct: 14 TFDSFGLHPDVLRALTESGYTKPTPIQAAAIPVVTAGHDVMGAAQTGTGKTAGFSLPIIH 73
Query: 202 MLRRDEALLPMKPMHP-RAIVLCTTEESADQGF-HMAKFISHCARLDSSMENGGVSSKAL 259
L D HP RA++L T E ADQ + ++AK+ + A L S++ GGV
Sbjct: 74 NLLPDANTSASPARHPVRALILTPTRELADQVYDNVAKYAKYTA-LRSAVVFGGVDMNPQ 132
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ + +L+ATP +L H++ R+V+ +R +VLDEAD + D GF P++ +I+N L
Sbjct: 133 TEQLRRGVEILVATPGRLLDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIINLL 191
>gi|427400760|ref|ZP_18891998.1| hypothetical protein HMPREF9710_01594 [Massilia timonae CCUG 45783]
gi|425720273|gb|EKU83196.1| hypothetical protein HMPREF9710_01594 [Massilia timonae CCUG 45783]
Length = 523
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 102/178 (57%), Gaps = 3/178 (1%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F + GL E+ +A+ G P+ IQ IP VL G+ V+ ++ +G+G+T ++ LP++Q+
Sbjct: 42 FADFGLAPEIQRALSDQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTASFSLPILQL 101
Query: 203 LRRDEALLPMKPM-HP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE 260
L A M P HP RA+VL T E A Q K + L +++ GG+ K
Sbjct: 102 LM-PHANASMSPARHPVRALVLVPTRELAVQVADNVKAYARHTPLRATVVFGGMDMKPQT 160
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
++ + ++IATP +L HIE +NVS ++ +V+DEAD + D GF P++ +I+N L
Sbjct: 161 EILRRGVEIVIATPGRLLDHIEQKNVSLGQVQMLVMDEADRMLDMGFLPDLQRIINLL 218
>gi|218201153|gb|EEC83580.1| hypothetical protein OsI_29242 [Oryza sativa Indica Group]
Length = 883
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 128/241 (53%), Gaps = 29/241 (12%)
Query: 109 ENKPSPPQPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQ 168
E+KP P +P+++ AS+++ SG F+ +GL E+ + V G VP+ IQ
Sbjct: 26 EHKPPPGRPKRE--GEGASKKKAKSGG-------FESMGLCEEVYRGVRHKGYRVPTPIQ 76
Query: 169 CVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEES 228
+P +L G + + +GSG+T A+L+P++Q LRR +A + RA++L T +
Sbjct: 77 RKAMPLILAGHDIAAMARTGSGKTAAFLVPMIQRLRRHDAGAGI-----RALILSPTRDL 131
Query: 229 ADQGFHMAKFISHCARLDSSMENGGVSSKA-LEDVSNAPIGMLIATPSEVLQH---IEDR 284
A Q A+ + L S+ GG S ++ E+++ P ++IATP ++ H +ED
Sbjct: 132 ATQTLKFAQQLGKFTDLKISLIVGGDSMESQFEELAENP-DIIIATPGRLVHHLAEVEDL 190
Query: 285 NVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLG 344
N+ + YVV DEAD+LF G ++ IL+ L D+ QT+L +A + + L
Sbjct: 191 NLRT--VEYVVFDEADSLFSLGLIQQLHDILHKLSDTR--------QTLLFSATLPQALA 240
Query: 345 E 345
+
Sbjct: 241 D 241
>gi|222110266|ref|YP_002552530.1| dead/deah box helicase domain-containing protein [Acidovorax ebreus
TPSY]
gi|221729710|gb|ACM32530.1| DEAD/DEAH box helicase domain protein [Acidovorax ebreus TPSY]
Length = 484
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 97/177 (54%), Gaps = 1/177 (0%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
+ L L + +AV +MG + IQ IP VL GK V+ ++ +G+G+T A+ LPL+Q
Sbjct: 5 YSTLALAEPLKRAVAEMGYENMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQR 64
Query: 203 LRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L + E HP RA+VL T E ADQ + +L S++ GG+ K
Sbjct: 65 LLKHENSSASPARHPVRALVLLPTRELADQVAQQIALYAKYTKLRSTVVFGGMDMKPQTI 124
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +L+ATP +L HIE +N + + YVVLDEAD + D GF P++ +IL+ L
Sbjct: 125 ELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYL 181
>gi|163746995|ref|ZP_02154351.1| ATP-dependent RNA helicase, putative [Oceanibulbus indolifex
HEL-45]
gi|161379556|gb|EDQ03969.1| ATP-dependent RNA helicase, putative [Oceanibulbus indolifex
HEL-45]
Length = 529
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 99/176 (56%), Gaps = 4/176 (2%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++ F +L L A+++KAV + G P+ IQ IP L G+ V+ + +G+G+T ++ LP+
Sbjct: 1 MTKFTDLNLNAKVLKAVVEAGYESPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPM 60
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
+ +L R A M PR++VLC T E A Q S +L ++ GGVS K
Sbjct: 61 LSLLARGRARARM----PRSLVLCPTRELAAQVAENFDTYSKHLKLTKALLIGGVSFKEQ 116
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
+ + + + +LIATP +L H E + D++ +V+DEAD + D GF P+I +I
Sbjct: 117 DKLIDKGVDVLIATPGRLLDHFERGKLILSDVKVMVVDEADRMLDMGFIPDIERIF 172
>gi|145638668|ref|ZP_01794277.1| ATP-dependent RNA helicase [Haemophilus influenzae PittII]
gi|145272263|gb|EDK12171.1| ATP-dependent RNA helicase [Haemophilus influenzae PittII]
Length = 439
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 98/179 (54%), Gaps = 11/179 (6%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+S F++ L E++KA+EK G P+ IQ IPA + V+ S+ +G+G+T A+LLP
Sbjct: 3 LSQFEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEECDVLGSAPTGTGKTTAFLLPA 62
Query: 200 VQML----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS 255
+Q L RR KP PR +VL T E A Q A+ ++ L+ + GGV+
Sbjct: 63 LQHLLDYPRR-------KPGPPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVA 115
Query: 256 SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+ DV N +++ATP +LQ+I++ N C + ++ DEAD + GFG + KI
Sbjct: 116 YQNHGDVFNTNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKI 174
>gi|121593545|ref|YP_985441.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax sp.
JS42]
gi|120605625|gb|ABM41365.1| DEAD/DEAH box helicase domain protein [Acidovorax sp. JS42]
Length = 484
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 97/177 (54%), Gaps = 1/177 (0%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
+ L L + +AV +MG + IQ IP VL GK V+ ++ +G+G+T A+ LPL+Q
Sbjct: 5 YSTLALAEPLKRAVAEMGYENMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQR 64
Query: 203 LRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L + E HP RA+VL T E ADQ + +L S++ GG+ K
Sbjct: 65 LLKHENSSASPARHPVRALVLLPTRELADQVAQQIALYAKYTKLRSTVVFGGMDMKPQTI 124
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +L+ATP +L HIE +N + + YVVLDEAD + D GF P++ +IL+ L
Sbjct: 125 ELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYL 181
>gi|254259821|ref|ZP_04950875.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1710a]
gi|254218510|gb|EET07894.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1710a]
Length = 486
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/242 (30%), Positives = 124/242 (51%), Gaps = 16/242 (6%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V ++F + GL AE++KA+ + G P+ IQ IP VL+G+ V+ ++ +G+G+T ++ LP
Sbjct: 9 VDATFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLP 68
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSS 256
++Q L HP RA++L T E ADQ ++ + H L S++ GGV
Sbjct: 69 IIQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTP-LRSAVVFGGVDM 127
Query: 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ +LIATP +L H++ + + ++ +VLDEAD + D GF P++ +ILN
Sbjct: 128 NPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILN 187
Query: 317 PLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMEC-----LERDNAGKVTAMLLEMDQ 371
L QT+L +A + + + S+ + + R NA T + D
Sbjct: 188 LLPKER--------QTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDV 239
Query: 372 AE 373
AE
Sbjct: 240 AE 241
>gi|145628788|ref|ZP_01784588.1| ATP-dependent RNA helicase [Haemophilus influenzae 22.1-21]
gi|144979258|gb|EDJ88944.1| ATP-dependent RNA helicase [Haemophilus influenzae 22.1-21]
gi|309750162|gb|ADO80146.1| ATP-dependent RNA helicase [Haemophilus influenzae R2866]
Length = 439
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 98/179 (54%), Gaps = 11/179 (6%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+S F++ L E++KA+EK G P+ IQ IPA + V+ S+ +G+G+T A+LLP
Sbjct: 3 LSQFEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEECDVLGSAPTGTGKTAAFLLPA 62
Query: 200 VQML----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS 255
+Q L RR KP PR +VL T E A Q A+ ++ L+ + GGV+
Sbjct: 63 LQHLLDYPRR-------KPGPPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVA 115
Query: 256 SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+ DV N +++ATP +LQ+I++ N C + ++ DEAD + GFG + KI
Sbjct: 116 YQNHGDVFNTNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKI 174
>gi|209517599|ref|ZP_03266438.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
gi|209502012|gb|EEA02029.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
Length = 510
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 103/179 (57%), Gaps = 3/179 (1%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F + GL +++KA+++ G P+ IQ IP VL G+ V+ ++ +G+G+T ++ LP++Q
Sbjct: 34 TFDQFGLAPDILKAIKESGYTSPTPIQAKAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 93
Query: 202 MLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSSKAL 259
L + HP RA++L T E ADQ ++ + H A L S++ GGV
Sbjct: 94 RLLPQASTSASPARHPVRALILTPTRELADQVAANVQAYAKHTA-LRSAVVFGGVDMNPQ 152
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ + +LIATP +L H++ + + ++ +VLDEAD + D GF P++ +ILN L
Sbjct: 153 SEQLRRGVEILIATPGRLLDHVQQKTANLGQVQMLVLDEADRMLDMGFLPDLQRILNLL 211
>gi|171057308|ref|YP_001789657.1| DEAD/DEAH box helicase [Leptothrix cholodnii SP-6]
gi|170774753|gb|ACB32892.1| DEAD/DEAH box helicase domain protein [Leptothrix cholodnii SP-6]
Length = 479
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 104/186 (55%), Gaps = 4/186 (2%)
Query: 137 AEVVSS---FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTL 193
AE+V++ F L L ++++A+ G + IQ IP VL+G+ V+ ++ +G+G+T
Sbjct: 8 AELVAAPARFDSLPLDPKLLRAIVDAGYLTMTPIQAKAIPIVLDGRDVMGAAQTGTGKTA 67
Query: 194 AYLLPLVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENG 252
A+ LPL+Q + R E HP RA+VL T E ADQ + K + ++L + G
Sbjct: 68 AFSLPLLQKMLRHENASASPARHPVRALVLAPTRELADQVANNVKTYARHSQLRVTCVFG 127
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
G+ + +LIATP +L HI+ +N + + YVVLDEAD + D GF P++
Sbjct: 128 GIDMAPQTAELKRGVEVLIATPGRLLDHIQAKNCQLNQVEYVVLDEADRMLDIGFLPDLQ 187
Query: 313 KILNPL 318
+IL+ L
Sbjct: 188 RILSYL 193
>gi|167569331|ref|ZP_02362205.1| ATP-dependent RNA helicase RhlE [Burkholderia oklahomensis C6786]
Length = 411
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 103/182 (56%), Gaps = 3/182 (1%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V ++F + GL AE++KA+ G P+ IQ IP VL+G+ V+ ++ +G+G+T ++ LP
Sbjct: 9 VDATFDQFGLAAEILKAIADQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLP 68
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSS 256
++Q L + HP RA++L T E ADQ ++ + H L S++ GGV
Sbjct: 69 IIQRLLPQASTSASPARHPVRALILTPTRELADQVAANVHAYAKHTP-LRSAVVFGGVDM 127
Query: 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ +LIATP +L H++ + + ++ +VLDEAD + D GF P++ +ILN
Sbjct: 128 NPQMAELRRGVEVLIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILN 187
Query: 317 PL 318
L
Sbjct: 188 LL 189
>gi|94311518|ref|YP_584728.1| RNA helicase [Cupriavidus metallidurans CH34]
gi|93355370|gb|ABF09459.1| RNA helicase [Cupriavidus metallidurans CH34]
Length = 556
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 106/185 (57%), Gaps = 15/185 (8%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F+ GL +++A+ + G P+ IQ IP VL GK V+ ++ +G+G+T + LP++Q
Sbjct: 74 TFESFGLDPRILRALTEQGYTKPTPIQAQAIPVVLLGKDVMGAAQTGTGKTAGFALPIIQ 133
Query: 202 MLRRDEALLPMK------PMHP-RAIVLCTTEESADQGF-HMAKFISHCARLDSSMENGG 253
L LP+ HP RA++L T E ADQ + ++A++ H L S++ GG
Sbjct: 134 RL------LPLANASASPARHPVRALMLTPTRELADQVYDNVARYAKHTD-LRSTVVFGG 186
Query: 254 VSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISK 313
V D + +L+ATP +L H++ ++V+ ++ +VLDEAD + D GF P++ +
Sbjct: 187 VDMNPQTDALRRGVEILVATPGRLLDHVQQKSVNLSQVQMLVLDEADRMLDMGFLPDLQR 246
Query: 314 ILNPL 318
I+N L
Sbjct: 247 IINLL 251
>gi|167718732|ref|ZP_02401968.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
DM98]
Length = 409
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/242 (30%), Positives = 124/242 (51%), Gaps = 16/242 (6%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V ++F + GL AE++KA+ + G P+ IQ IP VL+G+ V+ ++ +G+G+T ++ LP
Sbjct: 9 VDATFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLP 68
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSS 256
++Q L HP RA++L T E ADQ ++ + H L S++ GGV
Sbjct: 69 IIQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTP-LRSAVVFGGVDM 127
Query: 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ +LIATP +L H++ + + ++ +VLDEAD + D GF P++ +ILN
Sbjct: 128 NPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILN 187
Query: 317 PLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMEC-----LERDNAGKVTAMLLEMDQ 371
L QT+L +A + + + S+ + + R NA T + D
Sbjct: 188 LLPKER--------QTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDV 239
Query: 372 AE 373
AE
Sbjct: 240 AE 241
>gi|399992257|ref|YP_006572497.1| ATP-dependent RNA helicase RhlE [Phaeobacter gallaeciensis DSM
17395 = CIP 105210]
gi|400753930|ref|YP_006562298.1| ATP-dependent RNA helicase RhlE [Phaeobacter gallaeciensis 2.10]
gi|398653083|gb|AFO87053.1| putative ATP-dependent RNA helicase RhlE [Phaeobacter gallaeciensis
2.10]
gi|398656812|gb|AFO90778.1| putative ATP-dependent RNA helicase RhlE [Phaeobacter gallaeciensis
DSM 17395 = CIP 105210]
Length = 516
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 99/177 (55%), Gaps = 4/177 (2%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++ F +L L +++KA+E+ G P+ IQ IP L G+ V+ + +G+G+T ++ LP+
Sbjct: 1 MTKFSDLNLNPKVLKAIEEAGYESPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPM 60
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
+ +L R A M PR++VLC T E A Q + +L ++ GGVS K
Sbjct: 61 ITLLARGRARARM----PRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQ 116
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ + + + +LIATP +L H E + D++ +V+DEAD + D GF P+I +I
Sbjct: 117 DTLIDKGVDVLIATPGRLLDHFERGKLILSDVKVMVVDEADRMLDMGFIPDIERIFG 173
>gi|390570352|ref|ZP_10250619.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
terrae BS001]
gi|389937684|gb|EIM99545.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
terrae BS001]
Length = 486
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 101/178 (56%), Gaps = 3/178 (1%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
++F + GL A+++KA+ + G P+ IQ IP VL G+ V+ ++ +G+G+T + LP++
Sbjct: 11 ATFDQFGLHADILKAIAEQGYTTPTPIQAEAIPVVLGGRDVMGAAQTGTGKTAGFSLPII 70
Query: 201 QMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSSKA 258
Q L + HP RA++L T E ADQ ++ + H + L S++ GGV
Sbjct: 71 QRLLPLASTSASPARHPVRALILTPTRELADQVAANVQAYAKHTS-LRSAVVFGGVDMNP 129
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ +LIATP +L H++ + + ++ +VLDEAD + D GF P++ +ILN
Sbjct: 130 QSAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILN 187
>gi|260775423|ref|ZP_05884320.1| ATP-dependent RNA helicase SrmB [Vibrio coralliilyticus ATCC
BAA-450]
gi|260608604|gb|EEX34769.1| ATP-dependent RNA helicase SrmB [Vibrio coralliilyticus ATCC
BAA-450]
Length = 410
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 98/176 (55%), Gaps = 3/176 (1%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F EL L ++ A+E+MG P++IQ IP L+G+ ++ S+ +G+G+T A++LP
Sbjct: 1 MIKNFAELELDENLLVAIEEMGYTRPTQIQAEAIPQALDGRDILASAPTGTGKTAAFVLP 60
Query: 199 LVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
+Q L + KP R ++L T E A Q A+ ++ L+ GGV +
Sbjct: 61 ALQYL---QDFPRRKPGPARVLILTPTRELAMQVADQARALAKNTNLNIFTITGGVQYQE 117
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
D+ +++ATP ++++IE C I +++LDEAD + D GFGP + ++
Sbjct: 118 HADILAKTQDIVVATPGRLMEYIEAERFDCRAIEWLILDEADRMLDMGFGPTVDRL 173
>gi|172061278|ref|YP_001808930.1| DEAD/DEAH box helicase [Burkholderia ambifaria MC40-6]
gi|171993795|gb|ACB64714.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
MC40-6]
Length = 511
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 104/182 (57%), Gaps = 3/182 (1%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V ++F + GL A+++KA+ + G P+ IQ IP VL G+ V+ ++ +G+G+T ++ LP
Sbjct: 31 VDATFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLP 90
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSS 256
++Q L + HP RA++L T E ADQ ++ + H + L S++ GGV
Sbjct: 91 IIQRLLPQASTSASPARHPVRALILTPTRELADQVAANVHAYAKHTS-LRSAVVFGGVDM 149
Query: 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ +LIATP +L H++ + + ++ +VLDEAD + D GF P++ +ILN
Sbjct: 150 NPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILN 209
Query: 317 PL 318
L
Sbjct: 210 LL 211
>gi|345308684|ref|XP_003428729.1| PREDICTED: probable ATP-dependent RNA helicase DDX41, partial
[Ornithorhynchus anatinus]
Length = 609
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 127/249 (51%), Gaps = 13/249 (5%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 169 IKSFREMKFPAAVLRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 228
Query: 200 VQMLRRDEALLPM-KPMHPRAIVLCTTEESADQGFHMAKFISHCAR------LDSSMENG 252
+ E LP K P +++C + E A Q + ++ + L ++ G
Sbjct: 229 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEENSPPLRCALCIG 288
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
G+S K + + M++ATP ++ ++ + VS D RY+ LDEAD + D GF +I
Sbjct: 289 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 348
Query: 313 KILNPLKDSALKSNGQ---GFQTILVT-AAIAEMLGEQLSSLMEC--LERDNAGKVTAML 366
I + K L G+ G ++ T + ++L +++ SL C L D A ++ M
Sbjct: 349 TIFSYFKVRPLLQGGRDRVGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMG 408
Query: 367 LEMDQAEVF 375
E D +F
Sbjct: 409 FEGDIRTIF 417
>gi|167918160|ref|ZP_02505251.1| DEAD/DEAH box helicase [Burkholderia pseudomallei BCC215]
Length = 414
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/242 (30%), Positives = 124/242 (51%), Gaps = 16/242 (6%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V ++F + GL AE++KA+ + G P+ IQ IP VL+G+ V+ ++ +G+G+T ++ LP
Sbjct: 9 VDATFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLP 68
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSS 256
++Q L HP RA++L T E ADQ ++ + H L S++ GGV
Sbjct: 69 IIQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTP-LRSAVVFGGVDM 127
Query: 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ +LIATP +L H++ + + ++ +VLDEAD + D GF P++ +ILN
Sbjct: 128 NPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILN 187
Query: 317 PLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMEC-----LERDNAGKVTAMLLEMDQ 371
L QT+L +A + + + S+ + + R NA T + D
Sbjct: 188 LLPKER--------QTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDV 239
Query: 372 AE 373
AE
Sbjct: 240 AE 241
>gi|167814905|ref|ZP_02446585.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
91]
Length = 411
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/242 (30%), Positives = 124/242 (51%), Gaps = 16/242 (6%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V ++F + GL AE++KA+ + G P+ IQ IP VL+G+ V+ ++ +G+G+T ++ LP
Sbjct: 9 VDATFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLP 68
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSS 256
++Q L HP RA++L T E ADQ ++ + H L S++ GGV
Sbjct: 69 IIQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTP-LRSAVVFGGVDM 127
Query: 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ +LIATP +L H++ + + ++ +VLDEAD + D GF P++ +ILN
Sbjct: 128 NPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILN 187
Query: 317 PLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMEC-----LERDNAGKVTAMLLEMDQ 371
L QT+L +A + + + S+ + + R NA T + D
Sbjct: 188 LLPKER--------QTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDV 239
Query: 372 AE 373
AE
Sbjct: 240 AE 241
>gi|167737747|ref|ZP_02410521.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
14]
Length = 409
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/242 (30%), Positives = 126/242 (52%), Gaps = 16/242 (6%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V ++F + GL AE++KA+ + G P+ IQ IP VL+G+ V+ ++ +G+G+T ++ LP
Sbjct: 9 VDATFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLP 68
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSS 256
++Q L HP RA++L T E ADQ ++ + H L S++ GGV
Sbjct: 69 IIQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTP-LRSAVVFGGVDM 127
Query: 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ +LIATP +L H++ + + ++ +VLDEAD + D GF P++ +ILN
Sbjct: 128 NPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILN 187
Query: 317 PLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLM---ECLE--RDNAGKVTAMLLEMDQ 371
L QT+L +A + + + S+ + + +E R NA T + D
Sbjct: 188 LLPKER--------QTLLFSATFSPEIKKLASTYLRNPQAIEVARSNAAASTVTQIVYDV 239
Query: 372 AE 373
AE
Sbjct: 240 AE 241
>gi|319763758|ref|YP_004127695.1| dead/deah box helicase domain-containing protein [Alicycliphilus
denitrificans BC]
gi|330823978|ref|YP_004387281.1| DEAD/DEAH box helicase [Alicycliphilus denitrificans K601]
gi|317118319|gb|ADV00808.1| DEAD/DEAH box helicase domain protein [Alicycliphilus denitrificans
BC]
gi|329309350|gb|AEB83765.1| DEAD/DEAH box helicase domain protein [Alicycliphilus denitrificans
K601]
Length = 480
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 96/177 (54%), Gaps = 1/177 (0%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
+ L L + +AV MG + IQ IP VL GK V+ ++ +G+G+T A+ LPL+Q
Sbjct: 5 YSTLALAEPLKRAVADMGYENMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQR 64
Query: 203 LRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L + E HP RA+VL T E ADQ + +L S++ GG+ K
Sbjct: 65 LLKHENSSASPARHPVRALVLLPTRELADQVAQQIAMYAKYTKLRSTVVFGGMDMKPQTA 124
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +L+ATP +L HIE +N + + YVVLDEAD + D GF P++ +IL+ L
Sbjct: 125 ELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYL 181
>gi|167562078|ref|ZP_02354994.1| ATP-dependent RNA helicase RhlE [Burkholderia oklahomensis EO147]
Length = 408
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 103/182 (56%), Gaps = 3/182 (1%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V ++F + GL AE++KA+ G P+ IQ IP VL+G+ V+ ++ +G+G+T ++ LP
Sbjct: 9 VDATFDQFGLAAEILKAIADQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLP 68
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSS 256
++Q L + HP RA++L T E ADQ ++ + H L S++ GGV
Sbjct: 69 IIQRLLPQASTSASPARHPVRALILTPTRELADQVAANVHAYAKHTP-LRSAVVFGGVDM 127
Query: 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ +LIATP +L H++ + + ++ +VLDEAD + D GF P++ +ILN
Sbjct: 128 NPQMAELRRGVEVLIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILN 187
Query: 317 PL 318
L
Sbjct: 188 LL 189
>gi|145636310|ref|ZP_01791979.1| ATP-dependent RNA helicase [Haemophilus influenzae PittHH]
gi|145270475|gb|EDK10409.1| ATP-dependent RNA helicase [Haemophilus influenzae PittHH]
Length = 439
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 98/175 (56%), Gaps = 3/175 (1%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+S F++ L E++KA+EK G P+ IQ IPA + + V+ S+ +G+G+T A+LLP
Sbjct: 3 LSQFEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPA 62
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
+Q L D + P PR +VL T E A Q A+ ++ L+ + GGV+ +
Sbjct: 63 LQHLL-DYPRRKLGP--PRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNH 119
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
DV N +++ATP +LQ+I++ N C + ++ DEAD + GFG + KI
Sbjct: 120 GDVFNTNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKI 174
>gi|260777564|ref|ZP_05886457.1| ATP-dependent RNA helicase [Vibrio coralliilyticus ATCC BAA-450]
gi|260605577|gb|EEX31862.1| ATP-dependent RNA helicase [Vibrio coralliilyticus ATCC BAA-450]
Length = 420
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/179 (36%), Positives = 91/179 (50%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+SSFQ LGL + VEK+G P+ IQ IP VL GK V+ + +G+G+T A+ LPL
Sbjct: 1 MSSFQHLGLSQALASTVEKLGFDTPTPIQEQAIPHVLEGKDVLAGAQTGTGKTAAFGLPL 60
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
+ L EA + A+V+ T E A Q F + A + GG S
Sbjct: 61 LNKLLDQEASRDPQSNDVLALVVVPTRELAQQVFDSLTAYASAAEIKIVTAYGGTSMNVQ 120
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+LIATP +L H+ +N++ Y+VLDEAD + D GF P+I +IL L
Sbjct: 121 TQNLRQGCDVLIATPGRLLDHLYCKNINLRKTSYLVLDEADRMLDMGFMPDIQRILKKL 179
>gi|115352406|ref|YP_774245.1| DEAD/DEAH box helicase [Burkholderia ambifaria AMMD]
gi|115282394|gb|ABI87911.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria AMMD]
Length = 497
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 104/182 (57%), Gaps = 3/182 (1%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V ++F + GL A+++KA+ + G P+ IQ IP VL G+ V+ ++ +G+G+T ++ LP
Sbjct: 9 VDATFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLP 68
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSS 256
++Q L + HP RA++L T E ADQ ++ + H + L S++ GGV
Sbjct: 69 IIQRLLPQASTSASPARHPVRALILTPTRELADQVAANVHAYAKHTS-LRSAVVFGGVDM 127
Query: 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ +LIATP +L H++ + + ++ +VLDEAD + D GF P++ +ILN
Sbjct: 128 NPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILN 187
Query: 317 PL 318
L
Sbjct: 188 LL 189
>gi|89053691|ref|YP_509142.1| DEAD/DEAH box helicase [Jannaschia sp. CCS1]
gi|88863240|gb|ABD54117.1| DEAD/DEAH box helicase-like protein [Jannaschia sp. CCS1]
Length = 644
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 98/177 (55%), Gaps = 4/177 (2%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+++F +L L ++ KA+ + G P+ IQ IP L G+ V+ + +G+G+T ++ LP+
Sbjct: 10 MTTFADLDLNPKVQKAIVEAGYESPTPIQAGAIPPALAGRDVLGIAQTGTGKTASFTLPM 69
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
+ ML R A M PR++VLC T E A Q + +L ++ GGVS K
Sbjct: 70 ITMLARGRARARM----PRSLVLCPTRELAAQVAENFDIYAKHVKLTKALLIGGVSFKEQ 125
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
E + + +LIATP +L H E + +D++ +V+DEAD + D GF P+I +I
Sbjct: 126 EQAIDKGVDVLIATPGRLLDHFERGKLILNDVKVMVVDEADRMLDMGFIPDIERIFG 182
>gi|195490088|ref|XP_002092996.1| GE21030 [Drosophila yakuba]
gi|194179097|gb|EDW92708.1| GE21030 [Drosophila yakuba]
Length = 827
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 108/203 (53%), Gaps = 13/203 (6%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
FQ +GL E+IK + K G VP+ IQ IP +L G+ VV + +GSG+T +L+PL +
Sbjct: 41 FQSMGLGFELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEK 100
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDV 262
L+R E P K RA++L T E A Q + K + L + + GG S +
Sbjct: 101 LQRRE---PTKGA--RALILSPTRELAVQTYKFIKELGRFMELKTILVLGGDSMDSQFSA 155
Query: 263 SNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSA 322
+ +++ATP L + ++ + I YVV DEAD LF+ GFG ++++ L+ L S
Sbjct: 156 IHTCPDVIVATPGRFLHLCVEMDLKLNSIEYVVFDEADRLFEMGFGEQLNETLHRLPSSR 215
Query: 323 LKSNGQGFQTILVTAAIAEMLGE 345
QT++ +A + ++L E
Sbjct: 216 --------QTVMFSATLPKLLVE 230
>gi|114771133|ref|ZP_01448573.1| dead-box ATP-dependent RNA helicase [Rhodobacterales bacterium
HTCC2255]
gi|114548415|gb|EAU51301.1| dead-box ATP-dependent RNA helicase [alpha proteobacterium
HTCC2255]
Length = 531
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 118/205 (57%), Gaps = 18/205 (8%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
S+F +LGL AE++KA+ +G +P+ IQ IPAVLN K +V + +G+G+T A+ LPL+
Sbjct: 103 SAFSKLGLDAEIVKALGFLGYTLPTPIQSQAIPAVLNSKDLVGLAQTGTGKTAAFALPLI 162
Query: 201 QMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMEN---GGVSSK 257
Q L + + +K RAI+L T E A Q H A F+S RL + + G K
Sbjct: 163 QQLLMNP--IAIKGRSARAIILSPTRELALQ-IHEA-FVSFGKRLPLNFTHAIGGAPIRK 218
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNP 317
+ D+S + +L+ATP + ++ + + D+ +++VLDEAD + D GF P + +I++
Sbjct: 219 QMRDLSKG-VDILVATPGRLEDLVDQKGLRLDETKFLVLDEADQMLDIGFLPAVKRIISK 277
Query: 318 L-KDSALKSNGQGFQTILVTAAIAE 341
+ KD QT+L +A +++
Sbjct: 278 VNKDR---------QTLLFSATMSK 293
>gi|167844897|ref|ZP_02470405.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
B7210]
Length = 399
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/242 (30%), Positives = 124/242 (51%), Gaps = 16/242 (6%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V ++F + GL AE++KA+ + G P+ IQ IP VL+G+ V+ ++ +G+G+T ++ LP
Sbjct: 9 VDATFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLP 68
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSS 256
++Q L HP RA++L T E ADQ ++ + H L S++ GGV
Sbjct: 69 IIQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTP-LRSAVVFGGVDM 127
Query: 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ +LIATP +L H++ + + ++ +VLDEAD + D GF P++ +ILN
Sbjct: 128 NPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILN 187
Query: 317 PLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMEC-----LERDNAGKVTAMLLEMDQ 371
L QT+L +A + + + S+ + + R NA T + D
Sbjct: 188 LLPKER--------QTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDV 239
Query: 372 AE 373
AE
Sbjct: 240 AE 241
>gi|83720702|ref|YP_441535.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
gi|83654527|gb|ABC38590.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
Length = 571
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/242 (30%), Positives = 124/242 (51%), Gaps = 16/242 (6%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V ++F + GL AE+++A+ + G P+ IQ IP VL+G+ V+ ++ +G+G+T ++ LP
Sbjct: 99 VDATFDQFGLAAEILRAIAEQGYTTPTPIQANAIPVVLSGRDVMGAAQTGTGKTASFSLP 158
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSS 256
++Q L HP RA++L T E ADQ ++ + H L S++ GGV
Sbjct: 159 IIQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTP-LRSAVVFGGVDM 217
Query: 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ +LIATP +L H++ + + ++ +VLDEAD + D GF P++ +ILN
Sbjct: 218 NPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILN 277
Query: 317 PLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMEC-----LERDNAGKVTAMLLEMDQ 371
L QT+L +A + + + S+ + + R NA T + D
Sbjct: 278 LLPKER--------QTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDV 329
Query: 372 AE 373
AE
Sbjct: 330 AE 331
>gi|167910130|ref|ZP_02497221.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
112]
Length = 400
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/242 (30%), Positives = 124/242 (51%), Gaps = 16/242 (6%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V ++F + GL AE++KA+ + G P+ IQ IP VL+G+ V+ ++ +G+G+T ++ LP
Sbjct: 9 VDATFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLP 68
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSS 256
++Q L HP RA++L T E ADQ ++ + H L S++ GGV
Sbjct: 69 IIQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTP-LRSAVVFGGVDM 127
Query: 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ +LIATP +L H++ + + ++ +VLDEAD + D GF P++ +ILN
Sbjct: 128 NPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILN 187
Query: 317 PLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMEC-----LERDNAGKVTAMLLEMDQ 371
L QT+L +A + + + S+ + + R NA T + D
Sbjct: 188 LLPKER--------QTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDV 239
Query: 372 AE 373
AE
Sbjct: 240 AE 241
>gi|84622357|ref|YP_449729.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|84366297|dbj|BAE67455.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF
311018]
Length = 460
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 104/201 (51%), Gaps = 10/201 (4%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL +++A+ + G P+ IQ IP VL G ++ + +G+G+T A+ LPL+Q
Sbjct: 2 SFESLGLAPFLLRALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLLQ 61
Query: 202 MLRRDEALLPMK-PMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE 260
L + P+ P PRA++L T E A Q + S R+ S++ GGV
Sbjct: 62 HL--GTSPQPVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQL 119
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 320
D + +LIA P ++ HIE R+V I ++LDEAD + D GF P I +IL L
Sbjct: 120 DTLRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPR 179
Query: 321 SALKSNGQGFQTILVTAAIAE 341
Q QT+L +A E
Sbjct: 180 -------QDRQTLLFSATFEE 193
>gi|387772360|ref|ZP_10128308.1| DEAD/DEAH box helicase [Haemophilus parahaemolyticus HK385]
gi|386906617|gb|EIJ71343.1| DEAD/DEAH box helicase [Haemophilus parahaemolyticus HK385]
Length = 445
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 103/180 (57%), Gaps = 11/180 (6%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++++F+EL L +++KA+ + G P+ +Q IP L+G+ ++ S+ +G+G+T A+LLP
Sbjct: 7 ILTTFEELDLSTQLLKALNEKGYKRPTSVQAQTIPHALDGQDLLGSAPTGTGKTAAFLLP 66
Query: 199 LVQML----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGV 254
+Q L RR KP PR ++L T E A Q A+ ++ +L + GGV
Sbjct: 67 AIQHLLDYPRR-------KPGAPRILILTPTRELAMQVAEQAETLAKFTKLSIATITGGV 119
Query: 255 SSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+ + ++ N+ +++ATP ++Q+I++ N C + ++ DEAD + GFG + KI
Sbjct: 120 AYQNHGEIFNSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKI 179
>gi|323491504|ref|ZP_08096686.1| ATP-dependent RNA helicase SrmB [Vibrio brasiliensis LMG 20546]
gi|323314258|gb|EGA67340.1| ATP-dependent RNA helicase SrmB [Vibrio brasiliensis LMG 20546]
Length = 411
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 97/176 (55%), Gaps = 3/176 (1%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F EL L ++ A+E+MG P++IQ IP L+G+ V+ S+ +G+G+T A+ LP
Sbjct: 1 MIRNFAELELDPNLLLAIEEMGYDRPTQIQAEAIPQALDGRDVLASAPTGTGKTAAFALP 60
Query: 199 LVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
+Q L + KP R ++L T E A Q A+ ++ L+ GGV +
Sbjct: 61 ALQFL---QDFPRRKPGPARVLILTPTRELAMQVADQARALAKHTNLNIFTITGGVQYQE 117
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
D+ +++ATP ++++IE C I +++LDEAD + D GFGP + ++
Sbjct: 118 HADILATTQDIVVATPGRLMEYIEAERFDCRAIEWLILDEADRMLDMGFGPTVDRL 173
>gi|149192208|ref|ZP_01870425.1| ATP-dependent RNA helicase SrmB [Vibrio shilonii AK1]
gi|148833966|gb|EDL50986.1| ATP-dependent RNA helicase SrmB [Vibrio shilonii AK1]
Length = 407
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 96/177 (54%), Gaps = 5/177 (2%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F EL L +++A+E+MG P+EIQ IP L+ K ++ S+ +G+G+T ++ +P
Sbjct: 1 MIRTFAELDLDPVLLEAIEEMGYSRPTEIQAQAIPQALDAKDILASAPTGTGKTASFAIP 60
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
+Q L P K P R +VL T E A Q K ++ RL + GGV+
Sbjct: 61 AIQYLLD----FPRKKAGPARILVLTPTRELAMQVAEHTKALAKHTRLKVATITGGVTYD 116
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
D +++ATP ++++IE C I ++VLDEAD + D GFGP + ++
Sbjct: 117 THADTLAQTQDIVVATPGRLMEYIESERFDCRAIEWLVLDEADRMLDLGFGPTVDRL 173
>gi|345872285|ref|ZP_08824222.1| DEAD/DEAH box helicase domain protein [Thiorhodococcus drewsii AZ1]
gi|343919163|gb|EGV29916.1| DEAD/DEAH box helicase domain protein [Thiorhodococcus drewsii AZ1]
Length = 446
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/177 (37%), Positives = 94/177 (53%), Gaps = 2/177 (1%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF ELGL AE+++AV+ G P+ IQ IPAVL G+ V+ + +G+G+T A+ LP++Q
Sbjct: 2 SFAELGLSAELLRAVDAQGYTHPTPIQLQAIPAVLLGRDVLAGAQTGTGKTAAFTLPMLQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
+L + A + PRA+VL T E A Q + L S GGV D
Sbjct: 62 LL--NAAQSNGRQRRPRALVLTPTRELAAQVGESVRLYGQNLPLRSLQIFGGVGMGPQVD 119
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +L+ATP +L H NV I +VLDEAD + D GF +I +IL L
Sbjct: 120 KLRRGVDILVATPGRLLDHQGQGNVDLGGIEILVLDEADRMLDMGFIHDIRRILKSL 176
>gi|167835963|ref|ZP_02462846.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis MSMB43]
Length = 397
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/242 (30%), Positives = 126/242 (52%), Gaps = 16/242 (6%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V ++F + GL AE++KA+ + G P+ IQ IP VL+G+ V+ ++ +G+G+T ++ LP
Sbjct: 9 VDATFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLP 68
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSS 256
++Q L HP RA++L T E ADQ ++ + H L S++ GGV
Sbjct: 69 IIQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTP-LRSAVVFGGVDM 127
Query: 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ +LIATP +L H++ + + ++ +VLDEAD + D GF P++ +ILN
Sbjct: 128 NPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILN 187
Query: 317 PLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLM---ECLE--RDNAGKVTAMLLEMDQ 371
L QT+L +A + + + S+ + + +E R NA T + D
Sbjct: 188 LLPKER--------QTLLFSATFSPEIKKLASTYLRDPQTIEVARSNAAASTVTQIVYDV 239
Query: 372 AE 373
AE
Sbjct: 240 AE 241
>gi|420246760|ref|ZP_14750191.1| DNA/RNA helicase, superfamily II, partial [Burkholderia sp. BT03]
gi|398073382|gb|EJL64557.1| DNA/RNA helicase, superfamily II, partial [Burkholderia sp. BT03]
Length = 411
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 104/186 (55%), Gaps = 15/186 (8%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
++F + GL A+++KA+ + G P+ IQ IP VL G+ V+ ++ +G+G+T + LP++
Sbjct: 11 ATFDQFGLHADILKAIAEQGYTTPTPIQAEAIPVVLGGRDVMGAAQTGTGKTAGFSLPII 70
Query: 201 QMLRRDEALLPMKPM------HP-RAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENG 252
Q L LP+ HP RA++L T E ADQ ++ + H + L S++ G
Sbjct: 71 QRL------LPLASTSASPARHPVRALILTPTRELADQVAANVQAYAKHTS-LRSAVVFG 123
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
GV + +LIATP +L H++ + + ++ +VLDEAD + D GF P++
Sbjct: 124 GVDMNPQSAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQ 183
Query: 313 KILNPL 318
+ILN L
Sbjct: 184 RILNLL 189
>gi|289665420|ref|ZP_06487001.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vasculorum
NCPPB 702]
Length = 460
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 104/201 (51%), Gaps = 10/201 (4%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL +++A+ + G P+ IQ IP VL G ++ + +G+G+T A+ LPL+Q
Sbjct: 2 SFESLGLAPFLLRALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLLQ 61
Query: 202 MLRRDEALLPMK-PMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE 260
L + P+ P PRA++L T E A Q + S R+ S++ GGV
Sbjct: 62 HL--GTSPQPVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQL 119
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 320
D + +LIA P ++ HIE R+V I ++LDEAD + D GF P I +IL L
Sbjct: 120 DALRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPR 179
Query: 321 SALKSNGQGFQTILVTAAIAE 341
Q QT+L +A E
Sbjct: 180 -------QDRQTLLFSATFEE 193
>gi|170701603|ref|ZP_02892549.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
IOP40-10]
gi|170133486|gb|EDT01868.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
IOP40-10]
Length = 571
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 104/182 (57%), Gaps = 3/182 (1%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V ++F + GL A+++KA+ + G P+ IQ IP VL G+ V+ ++ +G+G+T ++ LP
Sbjct: 83 VDATFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLP 142
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSS 256
++Q L + HP RA++L T E ADQ ++ + H + L S++ GGV
Sbjct: 143 IIQRLLPQASTSASPARHPVRALILTPTRELADQVAANVHAYAKHTS-LRSAVVFGGVDM 201
Query: 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ +LIATP +L H++ + + ++ +VLDEAD + D GF P++ +ILN
Sbjct: 202 NPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILN 261
Query: 317 PL 318
L
Sbjct: 262 LL 263
>gi|171318169|ref|ZP_02907335.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
MEX-5]
gi|171096637|gb|EDT41526.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
MEX-5]
Length = 571
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 104/182 (57%), Gaps = 3/182 (1%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V ++F + GL A+++KA+ + G P+ IQ IP VL G+ V+ ++ +G+G+T ++ LP
Sbjct: 83 VDATFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLP 142
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSS 256
++Q L + HP RA++L T E ADQ ++ + H + L S++ GGV
Sbjct: 143 IIQRLLPQASTSASPARHPVRALILTPTRELADQVAANVHAYAKHTS-LRSAVVFGGVDM 201
Query: 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ +LIATP +L H++ + + ++ +VLDEAD + D GF P++ +ILN
Sbjct: 202 NPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILN 261
Query: 317 PL 318
L
Sbjct: 262 LL 263
>gi|421750235|ref|ZP_16187502.1| helicase, partial [Cupriavidus necator HPC(L)]
gi|409770743|gb|EKN53287.1| helicase, partial [Cupriavidus necator HPC(L)]
Length = 423
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 105/185 (56%), Gaps = 15/185 (8%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F GL +++A+ + G P+ IQ IP VL GK V+ ++ +G+G+T + LP++Q
Sbjct: 20 TFDSFGLDPRVLRALSEQGYTKPTPIQAQAIPVVLLGKDVMGAAQTGTGKTAGFALPIIQ 79
Query: 202 MLRRDEALLPMK------PMHP-RAIVLCTTEESADQGF-HMAKFISHCARLDSSMENGG 253
L LP+ HP RA++L T E ADQ + ++A++ H L S++ GG
Sbjct: 80 RL------LPLANASASPARHPVRALMLTPTRELADQVYDNVARYARHTD-LRSTVVFGG 132
Query: 254 VSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISK 313
V D + +L+ATP +L H++ ++V+ ++ +VLDEAD + D GF P++ +
Sbjct: 133 VDMNPQTDALRRGVEILVATPGRLLDHVQQKSVNLSQVQMLVLDEADRMLDMGFLPDLQR 192
Query: 314 ILNPL 318
I+N L
Sbjct: 193 IINLL 197
>gi|148975453|ref|ZP_01812324.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrionales
bacterium SWAT-3]
gi|145964881|gb|EDK30132.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrionales
bacterium SWAT-3]
Length = 423
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 99/185 (53%), Gaps = 2/185 (1%)
Query: 137 AEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYL 196
+E SF +LGL ++ + ++ P+ +Q IP VL GK V+ + +G+G+T A+
Sbjct: 2 SESTKSFNQLGLSEHLLATLSELNFTAPTSVQEQAIPLVLEGKDVLAGAQTGTGKTAAFG 61
Query: 197 LPLVQ-MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS 255
LP++Q +L + ++P P RA+VL T E A Q F + L + GGVS
Sbjct: 62 LPIIQRLLATKDNVIP-NPKLVRALVLVPTRELAQQVFDNVTSYAKGTDLKVVVAYGGVS 120
Query: 256 SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
K D A +L+ATP ++ H+ +N+ +VLDEAD + D GF P+I +IL
Sbjct: 121 MKVQTDNLRAGADILVATPGRLIDHMFTKNIMLSQTEVLVLDEADRMLDMGFMPDIKRIL 180
Query: 316 NPLKD 320
+ + +
Sbjct: 181 SRMNE 185
>gi|58580393|ref|YP_199409.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae KACC
10331]
gi|58424987|gb|AAW74024.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae KACC
10331]
Length = 484
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 104/201 (51%), Gaps = 10/201 (4%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL +++A+ + G P+ IQ IP VL G ++ + +G+G+T A+ LPL+Q
Sbjct: 26 SFESLGLAPFLLRALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLLQ 85
Query: 202 MLRRDEALLPMK-PMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE 260
L + P+ P PRA++L T E A Q + S R+ S++ GGV
Sbjct: 86 HL--GTSPQPVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQL 143
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 320
D + +LIA P ++ HIE R+V I ++LDEAD + D GF P I +IL L
Sbjct: 144 DTLRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPR 203
Query: 321 SALKSNGQGFQTILVTAAIAE 341
Q QT+L +A E
Sbjct: 204 -------QDRQTLLFSATFEE 217
>gi|325185186|emb|CCA19676.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
Length = 494
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 119/220 (54%), Gaps = 9/220 (4%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
S+F++ L A + KA+ + G+ P+ IQ I AVL+G +++ + +G+G+TL+Y++P++
Sbjct: 37 STFEQYSLHANLCKALHESGIHKPTSIQRKSINAVLSGHNILCLAQTGTGKTLSYMIPII 96
Query: 201 QMLRRDEAL----LPMKPM--HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGV 254
+ ++R E+ P+ PR ++ + E A Q +AK ++H + S + G
Sbjct: 97 EKIKRSESAKLRETQAAPLISRPRVLIAVPSRELALQLGSVAKQLAHHVKFASCVVTNGE 156
Query: 255 SSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDR--GFGPEIS 312
K + PI +LI TP ++ I+ ++ I ++LDEADTLFD GF ++
Sbjct: 157 HKKVQQQKLARPIDILIGTPGRIVTCIKKQDFYLSQIDTLILDEADTLFDAKMGFIDDLK 216
Query: 313 KILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLME 352
IL P++ S K + Q+ILV A + +G + + E
Sbjct: 217 AILAPIQASCHKRECK-LQSILVAATATKSVGRVWNRMFE 255
>gi|75908173|ref|YP_322469.1| DEAD/DEAH box helicase [Anabaena variabilis ATCC 29413]
gi|75701898|gb|ABA21574.1| DEAD/DEAH box helicase-like protein [Anabaena variabilis ATCC
29413]
Length = 426
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 99/178 (55%), Gaps = 1/178 (0%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL E+I+AV ++G P+ IQ IPAVL+G+ ++ + +G+G+T ++ LPL+
Sbjct: 2 SFSHLGLSNEIIRAVTELGYTKPTPIQMQSIPAVLSGRDLLAGAQTGTGKTASFTLPLLH 61
Query: 202 MLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE 260
+L +D P P RA++L T E A Q + L+S + GGVS +
Sbjct: 62 LLSQDSLKSASSPSSPIRALILTPTRELAAQVESSVRDYGKYLNLNSMVMFGGVSINPQK 121
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +L+ATP +L H++ V+ I +VLDEAD + D GF +I +IL+ L
Sbjct: 122 QRLKGRVDILVATPGRLLDHVQQGTVNLSQIEILVLDEADRMLDMGFIRDIRRILSLL 179
>gi|65306809|gb|AAY41942.1| vasa-like protein [Anopheles gambiae]
Length = 596
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/269 (29%), Positives = 134/269 (49%), Gaps = 23/269 (8%)
Query: 104 KTNNPENKPSPPQP-EQQQL---SNIASE---------REKSSGSNA-EVVSSFQELGLK 149
KT+ P PP P E + L S I+S + + SG N + V SF+ GL+
Sbjct: 123 KTDKPRELYIPPLPTEDESLIFGSGISSGINFDKFEEIQVRVSGENPPDHVESFERSGLR 182
Query: 150 AEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEAL 209
E++ V K P+ IQ IP +LNG+ ++ + +GSG+T A++LP++ L E
Sbjct: 183 EEVMTNVRKSSYTKPTPIQRYAIPIILNGRDLMACAQTGSGKTAAFMLPMIHHLLDKEDS 242
Query: 210 LPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGM 269
L ++ +P +++ T E A Q + +H +L + GG + + + +
Sbjct: 243 LELRTRNPYIVIVAPTRELAIQIHDEGRKFAHGTKLKVCVSYGGTAVQHQLQLMRGGCHV 302
Query: 270 LIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQG 329
L+ATP +L I+ V+ +++ +VVLDEAD + D GF P I K++ A Q
Sbjct: 303 LVATPGRLLDFIDRGYVTFENVNFVVLDEADRMLDMGFLPSIEKVMG----HATMPEKQQ 358
Query: 330 FQTILVTAA----IAEMLGEQLSSLMECL 354
QT++ +A I E+ G+ L + + C+
Sbjct: 359 RQTLMFSATFPAEIQELAGKFLHNYI-CV 386
>gi|21230065|ref|NP_635982.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66769942|ref|YP_244704.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
str. 8004]
gi|188993155|ref|YP_001905165.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
str. B100]
gi|21111589|gb|AAM39906.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66575274|gb|AAY50684.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
str. 8004]
gi|167734915|emb|CAP53127.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris]
Length = 462
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 103/201 (51%), Gaps = 10/201 (4%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL +++A+ + G P+ IQ IP VL G ++ + +G+G+T A+ LPL+Q
Sbjct: 2 SFESLGLAPFLLRALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLLQ 61
Query: 202 MLRRDEALLPMK-PMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE 260
L P+ P PRA++L T E A Q + S R+ S++ GGV
Sbjct: 62 HL--GTTPQPVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQL 119
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 320
D + +LIA P ++ HIE R+V I ++LDEAD + D GF P I +IL L
Sbjct: 120 DALRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPR 179
Query: 321 SALKSNGQGFQTILVTAAIAE 341
Q QT+L +A E
Sbjct: 180 -------QDRQTLLFSATFEE 193
>gi|346992915|ref|ZP_08860987.1| ATP-dependent RNA helicase RhlE [Ruegeria sp. TW15]
Length = 455
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 101/181 (55%), Gaps = 4/181 (2%)
Query: 136 NAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAY 195
N ++ F EL L +++KA+E+ G P+ IQ IPA L G+ V+ + +G+G+T ++
Sbjct: 2 NRTYMTKFNELNLNPKVLKAIEEAGYETPTPIQEGAIPAALEGRDVLGIAQTGTGKTASF 61
Query: 196 LLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS 255
LP++ +L R A M PR++VLC T E A Q + +L ++ GGVS
Sbjct: 62 TLPMITLLARGRARARM----PRSLVLCPTRELAAQVAENFDTYAKHLKLTKALLIGGVS 117
Query: 256 SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
K + + + + +LIATP +L H E + ++ +V+DEAD + D GF P+I +I
Sbjct: 118 FKEQDALIDRGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIF 177
Query: 316 N 316
+
Sbjct: 178 S 178
>gi|294899003|ref|XP_002776456.1| ATP-dependent RNA helicase dbp-10, putative [Perkinsus marinus ATCC
50983]
gi|239883447|gb|EER08272.1| ATP-dependent RNA helicase dbp-10, putative [Perkinsus marinus ATCC
50983]
Length = 977
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 102/184 (55%), Gaps = 5/184 (2%)
Query: 132 SSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGR 191
SSG +FQ +GL + KA++KMG P+ IQ IPA+L G VV + +GSG+
Sbjct: 21 SSGGKKISGGAFQTMGLSDPLFKAIQKMGYNQPTPIQRKAIPAILGGSDVVAMARTGSGK 80
Query: 192 TLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMEN 251
T A+++P++Q+L+ ++ RA++L T E A Q + + + L +
Sbjct: 81 TAAFVIPMIQILKGHSEVVG-----ARAVILSPTRELAMQTIKVTRMLGKFTDLRLCLIV 135
Query: 252 GGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEI 311
GG S ++ D ++ +LI TP ++ H+ + ++S ++Y+V DEAD LF+ GF ++
Sbjct: 136 GGHSMESQFDRLSSNPDVLICTPGRLVHHMVEADLSLQRVQYIVFDEADRLFEMGFADDM 195
Query: 312 SKIL 315
IL
Sbjct: 196 QSIL 199
>gi|387769211|ref|ZP_10125477.1| DEAD/DEAH box helicase [Pasteurella bettyae CCUG 2042]
gi|386907167|gb|EIJ71882.1| DEAD/DEAH box helicase [Pasteurella bettyae CCUG 2042]
Length = 445
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 98/178 (55%), Gaps = 11/178 (6%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
S F++ L E++KA+ K G P+ IQ IPA ++ + ++ S+ +G+G+T A+LLP +
Sbjct: 4 SQFEDFELAPELLKALAKKGYTRPTAIQLEAIPAAMDARDILGSAPTGTGKTAAFLLPAI 63
Query: 201 QML----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSS 256
Q L RR KP PR ++L T E A Q A+ ++ L + GGV+
Sbjct: 64 QHLLDYPRR-------KPGAPRILILTPTRELAMQVAQQAEELAQFTNLSIATITGGVAY 116
Query: 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+ ++ N +++ATP +LQ+I++ N C + ++LDEAD + GFG + KI
Sbjct: 117 QNHGEIFNKNQDIVVATPGRLLQYIKEENFDCRAVEILILDEADRMLQMGFGQDAEKI 174
>gi|375264486|ref|YP_005021929.1| ATP-dependent RNA helicase SrmB [Vibrio sp. EJY3]
gi|369839810|gb|AEX20954.1| ATP-dependent RNA helicase SrmB [Vibrio sp. EJY3]
Length = 407
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 99/178 (55%), Gaps = 3/178 (1%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F EL L + ++ A+E+MG P+++Q IP L+G+ ++ S+ +G+G+T A++LP
Sbjct: 1 MIRTFAELDLDSNLLDAIEEMGFERPTKVQAEAIPQALDGRDILASAPTGTGKTAAFVLP 60
Query: 199 LVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
+Q L + KP R ++L T E A Q A+ ++ +L+ GGV +
Sbjct: 61 ALQYL---QDFPRRKPGPARILILTPTRELAMQVADQARALAKNTKLNIFTITGGVQYQE 117
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
D+ +++ATP + ++IE C I +++LDEAD + D GF P + ++ N
Sbjct: 118 HADILATTQDIVVATPGRLREYIEAERFDCRAIEWLILDEADRMLDMGFAPTVDRLSN 175
>gi|336315118|ref|ZP_08570030.1| DNA/RNA helicase, superfamily II [Rheinheimera sp. A13L]
gi|335880529|gb|EGM78416.1| DNA/RNA helicase, superfamily II [Rheinheimera sp. A13L]
Length = 438
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 115/219 (52%), Gaps = 11/219 (5%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F +L L ++++++ +G P+ IQ +PA + GK +++SS +GSG+TLAYLLP++Q
Sbjct: 3 FHDLALDPRLVRSIQHLGFAQPTPIQQEAVPAAMTGKDLMVSSQTGSGKTLAYLLPMMQR 62
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDV 262
L R P+ RA++L T E A Q + + L S++ GG + E +
Sbjct: 63 LLRSR---PLSKQDARALILVPTRELAHQVYAKLRLFVANTPLTSALIVGGENFNEQEKI 119
Query: 263 SNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSA 322
+++ATP + H++ + + ++LDEAD + D GF P++++I N D
Sbjct: 120 LKRQPTIIVATPGRFIDHLQHKTFFIQGLEMLILDEADRMLDLGFMPQLNEI-NKAADHR 178
Query: 323 LKSNGQGFQTILVTAAIAEM-LGEQLSSLMECLERDNAG 360
L+ QT++ +A + + E SL++ R + G
Sbjct: 179 LR------QTLMFSATLDHAEVNELAMSLLKSPHRVSVG 211
>gi|325921307|ref|ZP_08183167.1| DNA/RNA helicase, superfamily II [Xanthomonas gardneri ATCC 19865]
gi|325548274|gb|EGD19268.1| DNA/RNA helicase, superfamily II [Xanthomonas gardneri ATCC 19865]
Length = 462
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 103/201 (51%), Gaps = 10/201 (4%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL +++A+ + G P+ IQ IP VL G ++ + +G+G+T A+ LPL+Q
Sbjct: 2 SFESLGLAPFLLRALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLLQ 61
Query: 202 MLRRDEALLPMK-PMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE 260
L P+ P PRA++L T E A Q + S R+ S++ GGV
Sbjct: 62 HL--GTTPQPVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQL 119
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 320
D + +LIA P ++ HIE R+V I ++LDEAD + D GF P I +IL L
Sbjct: 120 DTLRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPR 179
Query: 321 SALKSNGQGFQTILVTAAIAE 341
Q QT+L +A E
Sbjct: 180 -------QDRQTLLFSATFEE 193
>gi|188578674|ref|YP_001915603.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae PXO99A]
gi|188523126|gb|ACD61071.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 460
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 104/201 (51%), Gaps = 10/201 (4%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL +++A+ + G P+ IQ IP VL G ++ + +G+G+T A+ LPL+Q
Sbjct: 2 SFESLGLAPFLLRALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLLQ 61
Query: 202 MLRRDEALLPMK-PMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE 260
L + P+ P PRA++L T E A Q + S R+ S++ GGV
Sbjct: 62 HL--GTSPQPVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQL 119
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 320
D + +LIA P ++ HIE R+V I ++LDEAD + D GF P I +IL L
Sbjct: 120 DTLRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPR 179
Query: 321 SALKSNGQGFQTILVTAAIAE 341
Q QT+L +A E
Sbjct: 180 -------QDRQTLLFSATFEE 193
>gi|357418532|ref|YP_004931552.1| ATP-dependent RNA helicase [Pseudoxanthomonas spadix BD-a59]
gi|355336110|gb|AER57511.1| ATP-dependent RNA helicase [Pseudoxanthomonas spadix BD-a59]
Length = 456
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 100/198 (50%), Gaps = 7/198 (3%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL +++A+ + G P+ IQ IP L G+ ++ + +G+G+T A+ LPL+Q
Sbjct: 2 SFETLGLAPFLLRALAEQGYETPTPIQEQAIPLALAGRDLMAGAQTGTGKTAAFGLPLLQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L + P PRA+VL T E A Q + S R+ S+ GGV D
Sbjct: 62 HLGTHPQAVTRGPRRPRALVLTPTRELATQVHESLRDYSKYLRIPSATIYGGVGMGPQLD 121
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDS 321
+ ++IA P ++ H+E R+V I +VLDEAD + D GF P I +IL L
Sbjct: 122 TLRRGVDLVIACPGRLIDHLERRSVDLSGIEVLVLDEADRMLDMGFLPSIKRILAKLPK- 180
Query: 322 ALKSNGQGFQTILVTAAI 339
Q QT+L +A
Sbjct: 181 ------QNRQTLLFSATF 192
>gi|325915753|ref|ZP_08178055.1| DNA/RNA helicase, superfamily II [Xanthomonas vesicatoria ATCC
35937]
gi|325538017|gb|EGD09711.1| DNA/RNA helicase, superfamily II [Xanthomonas vesicatoria ATCC
35937]
Length = 461
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 104/201 (51%), Gaps = 10/201 (4%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL +++A+ + G P+ IQ IP VL G ++ + +G+G+T A+ LPL+Q
Sbjct: 2 SFESLGLAPFLLRALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLLQ 61
Query: 202 MLRRDEALLPMK-PMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE 260
L + P+ P PRA++L T E A Q + S R+ S++ GGV
Sbjct: 62 HL--GTSPQPVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQL 119
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 320
D + +LIA P ++ HIE R+V I ++LDEAD + D GF P I +IL L
Sbjct: 120 DTLRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPR 179
Query: 321 SALKSNGQGFQTILVTAAIAE 341
Q QT+L +A E
Sbjct: 180 -------QDRQTLLFSATFEE 193
>gi|118785473|ref|XP_314684.3| AGAP008578-PA [Anopheles gambiae str. PEST]
gi|116127754|gb|EAA10198.3| AGAP008578-PA [Anopheles gambiae str. PEST]
Length = 596
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/269 (29%), Positives = 134/269 (49%), Gaps = 23/269 (8%)
Query: 104 KTNNPENKPSPPQP-EQQQL---SNIASE---------REKSSGSNA-EVVSSFQELGLK 149
KT+ P PP P E + L S I+S + + SG N + V SF+ GL+
Sbjct: 123 KTDKPRELYIPPLPTEDESLIFGSGISSGINFDKFEEIQVRVSGENPPDHVESFERSGLR 182
Query: 150 AEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEAL 209
E++ V K P+ IQ IP +LNG+ ++ + +GSG+T A++LP++ L E
Sbjct: 183 EEVMTNVRKSSYTKPTPIQRYAIPIILNGRDLMACAQTGSGKTAAFMLPMIHHLLDKEDS 242
Query: 210 LPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGM 269
L ++ +P +++ T E A Q + +H +L + GG + + + +
Sbjct: 243 LELRTRNPYIVIVAPTRELAIQIHDEGRKFAHGTKLKVCVSYGGTAVQHQLQLMRGGCHV 302
Query: 270 LIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQG 329
L+ATP +L I+ V+ +++ +VVLDEAD + D GF P I K++ A Q
Sbjct: 303 LVATPGRLLDFIDRGYVTFENVNFVVLDEADRMLDMGFLPSIEKVMG----HATMPEKQQ 358
Query: 330 FQTILVTAA----IAEMLGEQLSSLMECL 354
QT++ +A I E+ G+ L + + C+
Sbjct: 359 RQTLMFSATFPAEIQELAGKFLHNYI-CV 386
>gi|421868011|ref|ZP_16299663.1| ATP-dependent RNA helicase Bcep18194_A5658 [Burkholderia
cenocepacia H111]
gi|358071942|emb|CCE50541.1| ATP-dependent RNA helicase Bcep18194_A5658 [Burkholderia
cenocepacia H111]
Length = 494
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 102/182 (56%), Gaps = 3/182 (1%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V ++F + GL A+++KA+ + G P+ IQ IP VL G+ V+ ++ +G+G+T ++ LP
Sbjct: 9 VDATFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLP 68
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSS 256
++Q L HP RA++L T E ADQ ++ + H L S++ GGV
Sbjct: 69 IIQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTP-LRSAVVFGGVDM 127
Query: 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ +LIATP +L H++ + + ++ +VLDEAD + D GF P++ +ILN
Sbjct: 128 NPQSAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILN 187
Query: 317 PL 318
L
Sbjct: 188 LL 189
>gi|206560771|ref|YP_002231536.1| putative ATP-dependent RNA helicase 2 [Burkholderia cenocepacia
J2315]
gi|444363801|ref|ZP_21164182.1| DEAD/DEAH box helicase [Burkholderia cenocepacia BC7]
gi|444368994|ref|ZP_21168777.1| DEAD/DEAH box helicase [Burkholderia cenocepacia K56-2Valvano]
gi|198036813|emb|CAR52713.1| putative ATP-dependent RNA helicase 2 [Burkholderia cenocepacia
J2315]
gi|443594238|gb|ELT62906.1| DEAD/DEAH box helicase [Burkholderia cenocepacia BC7]
gi|443599860|gb|ELT68103.1| DEAD/DEAH box helicase [Burkholderia cenocepacia K56-2Valvano]
Length = 494
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 102/182 (56%), Gaps = 3/182 (1%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V ++F + GL A+++KA+ + G P+ IQ IP VL G+ V+ ++ +G+G+T ++ LP
Sbjct: 9 VDATFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLP 68
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSS 256
++Q L HP RA++L T E ADQ ++ + H L S++ GGV
Sbjct: 69 IIQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTP-LRSAVVFGGVDM 127
Query: 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ +LIATP +L H++ + + ++ +VLDEAD + D GF P++ +ILN
Sbjct: 128 NPQSAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILN 187
Query: 317 PL 318
L
Sbjct: 188 LL 189
>gi|192362407|ref|YP_001982121.1| ATP-dependent RNA helicase [Cellvibrio japonicus Ueda107]
gi|190688572|gb|ACE86250.1| ATP-dependent RNA helicase, DEAD box family [Cellvibrio japonicus
Ueda107]
Length = 477
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 122/238 (51%), Gaps = 7/238 (2%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F LGL E+++AV++ G + +Q IP G+ +++++ +G+G+T A+ PL+Q
Sbjct: 30 NFAALGLAPELLRAVKRCGFQQLTPVQEQAIPPARRGRDLLVTAQTGTGKTAAFGFPLLQ 89
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L E +P H RA+VL T E +Q + +H L + GGV + +
Sbjct: 90 QLL--EKPRATQPGHTRALVLAPTRELVEQVADNLQQYAHFTSLTIAAVYGGVKHSSQAN 147
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDS 321
A + +L+ATP +L+H+E N++ + ++VLDEAD + D GF EISK+LN +
Sbjct: 148 KLQAGLDVLVATPGRLLEHVELGNINLQQVEFLVLDEADRMLDMGFVGEISKLLNGMGKK 207
Query: 322 ALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDN--AGKVTAMLLEMDQAEVFDL 377
T VT E+L LS + + N A V +L +DQA ++L
Sbjct: 208 PQILFFSATLTQSVTTLAKEILARPLSV---AVSKRNAVADTVEHLLYPVDQARKYEL 262
>gi|384420778|ref|YP_005630138.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzicola
BLS256]
gi|353463691|gb|AEQ97970.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzicola
BLS256]
Length = 460
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 104/201 (51%), Gaps = 10/201 (4%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL +++A+ + G P+ IQ IP VL G ++ + +G+G+T A+ LPL+Q
Sbjct: 2 SFESLGLAPFLLRALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLLQ 61
Query: 202 MLRRDEALLPMK-PMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE 260
L + P+ P PRA++L T E A Q + S R+ S++ GGV
Sbjct: 62 HL--GTSPQPVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQL 119
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 320
D + +LIA P ++ HIE R+V I ++LDEAD + D GF P I +IL L
Sbjct: 120 DTLRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPR 179
Query: 321 SALKSNGQGFQTILVTAAIAE 341
Q QT+L +A E
Sbjct: 180 -------QDRQTLLFSATFEE 193
>gi|294900795|ref|XP_002777119.1| ATP-dependent RNA helicase dbp-10, putative [Perkinsus marinus ATCC
50983]
gi|239884576|gb|EER08935.1| ATP-dependent RNA helicase dbp-10, putative [Perkinsus marinus ATCC
50983]
Length = 967
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 102/184 (55%), Gaps = 5/184 (2%)
Query: 132 SSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGR 191
SSG +FQ +GL + KA++KMG P+ IQ IPA+L G VV + +GSG+
Sbjct: 22 SSGGKKISGGAFQTMGLSDPLFKAIQKMGYNQPTPIQRKAIPAILGGSDVVAMARTGSGK 81
Query: 192 TLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMEN 251
T A+++P++Q+L+ ++ RA++L T E A Q + + + L +
Sbjct: 82 TAAFVIPMIQILKGHSEVVG-----ARAVILSPTRELAMQTIKVTRMLGKFTDLRLCLIV 136
Query: 252 GGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEI 311
GG S ++ D ++ +LI TP ++ H+ + ++S ++Y+V DEAD LF+ GF ++
Sbjct: 137 GGHSMESQFDRLSSNPDVLICTPGRLVHHMVEADLSLQRVQYIVFDEADRLFEMGFADDM 196
Query: 312 SKIL 315
IL
Sbjct: 197 QSIL 200
>gi|330840963|ref|XP_003292476.1| hypothetical protein DICPUDRAFT_157190 [Dictyostelium purpureum]
gi|325077283|gb|EGC31006.1| hypothetical protein DICPUDRAFT_157190 [Dictyostelium purpureum]
Length = 780
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 128/236 (54%), Gaps = 17/236 (7%)
Query: 109 ENKPSPPQPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQ 168
E KP +P Q + +K E + +F+EL L ++KAV+K+G P+ IQ
Sbjct: 150 EIKPVNNKPVQNDKIKLLQSNKKMKKIVEEELPTFEELHLSRPLLKAVQKLGFSQPTPIQ 209
Query: 169 CVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ-MLRRDEALLPMKPMHPRAIVLCTTEE 227
IP LNGK ++ S+ +GSG+T A+LLP+++ +L RD + R +VL T E
Sbjct: 210 AKTIPLALNGKDILASASTGSGKTAAFLLPILERLLFRDSEYRAI-----RVLVLLPTRE 264
Query: 228 SADQGFHMAKFISHCARLDSSMENGGVSSKALE-DVSNAPIGMLIATPSEVLQHIED-RN 285
A Q + + ++ + + S + GG+S+KA E ++ P ++IATP ++ H+ +
Sbjct: 265 LALQCQSVLENLAQFSNITSCLIVGGLSNKAQEVELRKRP-DVVIATPGRLIDHLLNAHG 323
Query: 286 VSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 341
+ +D+ ++LDEAD L D GF EI+KI++ S QT+L +A + +
Sbjct: 324 IGLEDLEILILDEADRLLDMGFKDEINKIVDSCPTSR--------QTMLFSATLND 371
>gi|417954611|ref|ZP_12597643.1| ATP-dependent RNA helicase SrmB [Vibrio orientalis CIP 102891 =
ATCC 33934]
gi|342814887|gb|EGU49818.1| ATP-dependent RNA helicase SrmB [Vibrio orientalis CIP 102891 =
ATCC 33934]
Length = 412
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 98/176 (55%), Gaps = 3/176 (1%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F EL L ++ A+E+MG P++IQ IP L+G+ ++ S+ +G+G+T A++LP
Sbjct: 1 MIRNFAELELDPNLLLAIEEMGYDRPTQIQAEAIPQALDGRDILASAPTGTGKTAAFVLP 60
Query: 199 LVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
+Q L + KP R ++L T E A Q A+ ++ +L+ GGV +
Sbjct: 61 ALQYL---QDFPRRKPGPARVLILTPTRELAMQVADQARALAKHTKLNIFTITGGVQYQE 117
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
D+ +++ATP ++++I C I +++LDEAD + D GFGP + ++
Sbjct: 118 HADILGKTQDIVVATPGRLMEYINAERFDCRAIEWLILDEADRMLDMGFGPTVDRL 173
>gi|260426960|ref|ZP_05780939.1| putative ATP-dependent RNA helicase RhlE [Citreicella sp. SE45]
gi|260421452|gb|EEX14703.1| putative ATP-dependent RNA helicase RhlE [Citreicella sp. SE45]
Length = 473
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 76/257 (29%), Positives = 127/257 (49%), Gaps = 24/257 (9%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++ F +L L +++KA+E+ G P+ IQ IP L GK V+ + +G+G+T ++ LP+
Sbjct: 1 MTKFSDLNLNPKVLKAIEEAGYETPTPIQAGAIPHALAGKDVLGIAQTGTGKTASFTLPM 60
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
+ L R A M PR++VLC T E A Q + +L ++ GGVS K
Sbjct: 61 ITALARGRARARM----PRSLVLCPTRELAAQVAENFDTYAKYVKLTKALLIGGVSFKEQ 116
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI--LNP 317
E + + + +LIATP +L H E + D++ +V+DEAD + D GF P+I +I L P
Sbjct: 117 EQLIDKGVDVLIATPGRLLDHFERGKLILTDVKVMVVDEADRMLDMGFIPDIERIFSLTP 176
Query: 318 LKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAGKVTAMLLEMDQAEVF-- 375
QT+ +A +A + ++ + ER + ++Q VF
Sbjct: 177 FTR----------QTLFFSATMAPEIERITNTFLSNPERVEVARQATASETIEQGAVFFK 226
Query: 376 ------DLTESQDALKK 386
+ TE +D L++
Sbjct: 227 GSRRDREATEKRDVLRQ 243
>gi|294625538|ref|ZP_06704165.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
gi|294663958|ref|ZP_06729380.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
gi|381170549|ref|ZP_09879705.1| ATP-dependent RNA helicase RhlE [Xanthomonas citri pv.
mangiferaeindicae LMG 941]
gi|418517745|ref|ZP_13083904.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. malvacearum
str. GSPB1386]
gi|292600152|gb|EFF44262.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
gi|292606274|gb|EFF49503.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
gi|380689006|emb|CCG36192.1| ATP-dependent RNA helicase RhlE [Xanthomonas citri pv.
mangiferaeindicae LMG 941]
gi|410705589|gb|EKQ64060.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. malvacearum
str. GSPB1386]
Length = 460
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/200 (34%), Positives = 102/200 (51%), Gaps = 8/200 (4%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL +++A+ + G P+ IQ IP VL G ++ + +G+G+T A+ LPL+Q
Sbjct: 2 SFESLGLAPFLLRALAEQGYETPTPIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLLQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L + P PRA++L T E A Q + S R+ S++ GGV D
Sbjct: 62 HLGTAPQTV-NGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLD 120
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDS 321
+ +LIA P ++ HIE R+V I ++LDEAD + D GF P I +IL L
Sbjct: 121 ALRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPR- 179
Query: 322 ALKSNGQGFQTILVTAAIAE 341
Q QT+L +A E
Sbjct: 180 ------QDRQTLLFSATFEE 193
>gi|418520909|ref|ZP_13086956.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. malvacearum
str. GSPB2388]
gi|410703332|gb|EKQ61826.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. malvacearum
str. GSPB2388]
Length = 460
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/200 (34%), Positives = 102/200 (51%), Gaps = 8/200 (4%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL +++A+ + G P+ IQ IP VL G ++ + +G+G+T A+ LPL+Q
Sbjct: 2 SFESLGLAPFLLRALAEQGYETPTPIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLLQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L + P PRA++L T E A Q + S R+ S++ GGV D
Sbjct: 62 HLGTAPQTV-NGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLD 120
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDS 321
+ +LIA P ++ HIE R+V I ++LDEAD + D GF P I +IL L
Sbjct: 121 ALRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPR- 179
Query: 322 ALKSNGQGFQTILVTAAIAE 341
Q QT+L +A E
Sbjct: 180 ------QDRQTLLFSATFEE 193
>gi|21244335|ref|NP_643917.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str.
306]
gi|21109989|gb|AAM38453.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str.
306]
Length = 460
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/200 (34%), Positives = 102/200 (51%), Gaps = 8/200 (4%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL +++A+ + G P+ IQ IP VL G ++ + +G+G+T A+ LPL+Q
Sbjct: 2 SFESLGLAPFLLRALAEQGYETPTPIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLLQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L + P PRA++L T E A Q + S R+ S++ GGV D
Sbjct: 62 HLGTAPQTV-NGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLD 120
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDS 321
+ +LIA P ++ HIE R+V I ++LDEAD + D GF P I +IL L
Sbjct: 121 ALRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPR- 179
Query: 322 ALKSNGQGFQTILVTAAIAE 341
Q QT+L +A E
Sbjct: 180 ------QDRQTLLFSATFEE 193
>gi|325284979|ref|YP_004260769.1| DEAD/DEAH box helicase [Cellulophaga lytica DSM 7489]
gi|324320433|gb|ADY27898.1| DEAD/DEAH box helicase domain protein [Cellulophaga lytica DSM
7489]
Length = 429
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/176 (38%), Positives = 100/176 (56%), Gaps = 7/176 (3%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F+ LGL ++KA++K G PS IQ IP VL GK V+ S+ +G+G+T + LPL+
Sbjct: 2 TFKNLGLSNNLLKAIDKKGYTTPSPIQEKAIPPVLEGKDVLASAQTGTGKTAGFTLPLLH 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
+L +AL +P+ RA++L T E A Q F K S L S++ GGV+ K
Sbjct: 62 LLSEQKALR-HRPV--RALILTPTRELAAQIFANVKEYSEFLDLRSAVIFGGVNQKP--Q 116
Query: 262 VSNAPIGM--LIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
++N GM L+ATP +L R +S D + VLDEAD + D GF +I +++
Sbjct: 117 IANLKRGMDVLVATPGRLLDLHNQRFLSLDKVEIFVLDEADRMLDMGFLRDIERVM 172
>gi|34496458|ref|NP_900673.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
gi|34102311|gb|AAQ58677.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
Length = 441
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 72/237 (30%), Positives = 124/237 (52%), Gaps = 18/237 (7%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F ELGL E+++A+++ G P+ IQ IP VL+G+ ++ ++ +G+G+T A++LP+++
Sbjct: 3 FSELGLSPEILRAIDEQGYSQPTPIQEKAIPLVLSGRDLLAAAQTGTGKTAAFMLPILER 62
Query: 203 LRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSSKALE 260
L++ MHP RA+VL T E ADQ G ++ + + L ++ GGV+
Sbjct: 63 LKKFANTSVSPAMHPIRALVLSPTRELADQIGVNVQTYTKYLP-LRATTVFGGVNMDPQT 121
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 320
+ +LIATP +L HI+ + V + + +VLDE D + D GF +I KI+ L
Sbjct: 122 QELRRGVEILIATPGRLLDHIQQKTVQLNKVEVLVLDEGDRMLDMGFIQDIRKIMGMLPK 181
Query: 321 SALKSNGQGFQTILVTAAIAEMLGEQLSSLMEC-----LERDNA--GKVTAMLLEMD 370
QT+L +A A + + M + R NA +V ++ ++D
Sbjct: 182 ER--------QTLLFSATFAPEIKRLAADFMHAPQTVEVARQNATNDQVEQLVFQVD 230
>gi|390990131|ref|ZP_10260421.1| ATP-dependent RNA helicase RhlE [Xanthomonas axonopodis pv. punicae
str. LMG 859]
gi|372555096|emb|CCF67396.1| ATP-dependent RNA helicase RhlE [Xanthomonas axonopodis pv. punicae
str. LMG 859]
Length = 460
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/200 (34%), Positives = 102/200 (51%), Gaps = 8/200 (4%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL +++A+ + G P+ IQ IP VL G ++ + +G+G+T A+ LPL+Q
Sbjct: 2 SFESLGLAPFLLRALAEQGYETPTPIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLLQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L + P PRA++L T E A Q + S R+ S++ GGV D
Sbjct: 62 HLGTAPQTV-NGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLD 120
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDS 321
+ +LIA P ++ HIE R+V I ++LDEAD + D GF P I +IL L
Sbjct: 121 ALRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPR- 179
Query: 322 ALKSNGQGFQTILVTAAIAE 341
Q QT+L +A E
Sbjct: 180 ------QDRQTLLFSATFEE 193
>gi|84686458|ref|ZP_01014352.1| ATP-dependent RNA helicase RhlE [Maritimibacter alkaliphilus
HTCC2654]
gi|84665641|gb|EAQ12117.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium
HTCC2654]
Length = 474
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 98/177 (55%), Gaps = 4/177 (2%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++ F +L L +++KAVE+ G P+ IQ IP L G+ V+ + +G+G+T ++ LP+
Sbjct: 1 MTKFSDLNLSPKVLKAVEEAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPM 60
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
+ ML R A M PR++VLC T E A Q + +L ++ GGVS K
Sbjct: 61 ITMLARGRARARM----PRSLVLCPTRELAAQVAENFDTYAKHVKLTKALLIGGVSFKEQ 116
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ + + + +LIATP +L H E + ++ +V+DEAD + D GF P+I +I
Sbjct: 117 DQLIDRGVDVLIATPGRLLDHFERGKLLLTGVQVMVVDEADRMLDMGFIPDIERIFG 173
>gi|438000180|ref|YP_007183913.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
blastocrithidii (ex Strigomonas culicis)]
gi|451813113|ref|YP_007449566.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
blastocrithidii TCC012E]
gi|429339414|gb|AFZ83836.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
blastocrithidii (ex Strigomonas culicis)]
gi|451779082|gb|AGF49962.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
blastocrithidii TCC012E]
Length = 447
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 105/180 (58%), Gaps = 3/180 (1%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
SSF+E GL ++ ++++G P+ IQ IP +L+G + ++ +G+G+T A++LP++
Sbjct: 14 SSFREFGLDFSIVSVLDEIGYVKPTLIQESAIPNILSGADFIGAAQTGTGKTAAFVLPII 73
Query: 201 QML--RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
L + ++ P + + R+++L T E ADQ + K S L S + GGV +
Sbjct: 74 NRLVPFANNSISPARHL-LRSLILVPTRELADQVYECVKLYSKNTNLRSLVLFGGVDLEH 132
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+D+ + +L+ATP ++ HI RNVS ++ +VLDEAD + D GF P++ +I+ L
Sbjct: 133 QKDLLHKGCEILVATPGRLIAHIIQRNVSLVNVDILVLDEADRMLDMGFIPDVDRIVRML 192
>gi|78049289|ref|YP_365464.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria
str. 85-10]
gi|325928526|ref|ZP_08189714.1| DNA/RNA helicase, superfamily II [Xanthomonas perforans 91-118]
gi|346726385|ref|YP_004853054.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citrumelo
F1]
gi|78037719|emb|CAJ25464.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria
str. 85-10]
gi|325541065|gb|EGD12619.1| DNA/RNA helicase, superfamily II [Xanthomonas perforans 91-118]
gi|346651132|gb|AEO43756.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citrumelo
F1]
Length = 462
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/200 (34%), Positives = 102/200 (51%), Gaps = 8/200 (4%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL +++A+ + G P+ IQ IP VL G ++ + +G+G+T A+ LPL+Q
Sbjct: 2 SFESLGLAPFLLRALAEQGYETPTPIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLLQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L + P PRA++L T E A Q + S R+ S++ GGV D
Sbjct: 62 HLGTAPQTV-NGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLD 120
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDS 321
+ +LIA P ++ HIE R+V I ++LDEAD + D GF P I +IL L
Sbjct: 121 ALRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPR- 179
Query: 322 ALKSNGQGFQTILVTAAIAE 341
Q QT+L +A E
Sbjct: 180 ------QDRQTLLFSATFEE 193
>gi|262401641|ref|ZP_06078207.1| ATP-dependent RNA helicase SrmB [Vibrio sp. RC586]
gi|262352058|gb|EEZ01188.1| ATP-dependent RNA helicase SrmB [Vibrio sp. RC586]
Length = 416
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 100/180 (55%), Gaps = 11/180 (6%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F +L L +++A+E+MG P+++Q IP L+G+ V+ S+ +G+G+T A+ +P
Sbjct: 1 MIKTFADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFAIP 60
Query: 199 LVQML----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGV 254
+Q L RR KP R ++L T E A Q A+ ++ RL+ GGV
Sbjct: 61 ALQYLLDFPRR-------KPGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGV 113
Query: 255 SSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+ D+ +++ATP +L++I+ C I +++LDEAD + D GFGP + ++
Sbjct: 114 QYQEHADILATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRL 173
>gi|84393512|ref|ZP_00992267.1| ATP-dependent RNA helicase [Vibrio splendidus 12B01]
gi|84375865|gb|EAP92757.1| ATP-dependent RNA helicase [Vibrio splendidus 12B01]
Length = 423
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 99/185 (53%), Gaps = 2/185 (1%)
Query: 137 AEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYL 196
+E SF +LGL +++ + ++ P+ +Q IP VL GK V+ + +G+G+T A+
Sbjct: 2 SESTRSFNQLGLSEQLLTTLSELNFTAPTSVQEQAIPLVLEGKDVLAGAQTGTGKTAAFG 61
Query: 197 LPLVQ-MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS 255
LP++Q ++ + ++P P RA+VL T E A Q F + + + GGVS
Sbjct: 62 LPIIQRLIETKDNVIP-NPKLVRALVLVPTRELAQQVFDNVTSYAKGTDIKVVVAYGGVS 120
Query: 256 SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
K D +L+ATP ++ H+ +N+ +VLDEAD + D GF P+I +IL
Sbjct: 121 MKVQTDNLRGGADILVATPGRLIDHMFTKNIMLSQTEVLVLDEADRMLDMGFMPDIKRIL 180
Query: 316 NPLKD 320
+ + D
Sbjct: 181 SRMND 185
>gi|307720922|ref|YP_003892062.1| DEAD/DEAH box helicase [Sulfurimonas autotrophica DSM 16294]
gi|306979015|gb|ADN09050.1| DEAD/DEAH box helicase domain protein [Sulfurimonas autotrophica
DSM 16294]
Length = 417
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 115/207 (55%), Gaps = 18/207 (8%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
++F LGL A ++KA+++ G P+ IQ IP +L K ++ + +G+G+T + LPL+
Sbjct: 5 TTFNSLGLSAPILKAIKEQGYNTPTPIQQKAIPVILEKKDILAGAQTGTGKTAGFTLPLL 64
Query: 201 QMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSSKA 258
++L R++ P K H RA++L T E A Q G +A + H S++ GGV K
Sbjct: 65 ELLSREK---PTKQKHKIRALILTPTRELAAQVGESVALYGKHLP-FKSTVIFGGV--KI 118
Query: 259 LEDVSNAPIG--MLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+SN G ++IATP +L HI + + ++ Y++LDEAD + D GF +I KILN
Sbjct: 119 NPQISNLRKGTDIVIATPGRLLDHISQKTIDLREVEYLILDEADRMLDMGFINDIKKILN 178
Query: 317 PLKDSALKSNGQGFQTILVTAAIAEML 343
+ + QT+L +A ++ +
Sbjct: 179 IIPNQR--------QTLLFSATYSDAI 197
>gi|301106809|ref|XP_002902487.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
gi|262098361|gb|EEY56413.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
Length = 470
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/213 (34%), Positives = 115/213 (53%), Gaps = 17/213 (7%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
+SFQ+LG+ A + +++M + P+ IQ IPA+L ++ ++ +G+G+TLAYL+P++
Sbjct: 34 ASFQDLGVDARTVSGLKEMKITTPTGIQQKSIPAILARHDILCAAQTGTGKTLAYLVPVI 93
Query: 201 QMLRRDEALLPMK-----PM-----HPRAIVLCTTEESADQGFHMAKFISHCARLDSSME 250
+ + R EA ++ P P A+VL + E A Q +AK +SH A+ S
Sbjct: 94 EQILRKEAAKKLERETKGPTEVVLGRPSALVLLPSRELALQVASVAKQLSHSAKFASCTI 153
Query: 251 NGGVSSKALEDVSNAPIGMLIATPSEVLQHIE--DRNVSCDDIRYVVLDEADTLFDR--G 306
G + ++ + ++I TP V + I D VSC D VV+DEADTLFD G
Sbjct: 154 TSGERKSIQQKNTSRRLDLIIGTPGRVAKCISKGDFFVSCIDT--VVVDEADTLFDAKMG 211
Query: 307 FGPEISKILNPLKDSALKSNGQGFQTILVTAAI 339
F E+ +L ++ SA K N Q Q IL A I
Sbjct: 212 FRKELDAVLGTIQASAAKRN-QSLQMILAAATI 243
>gi|260363591|ref|ZP_05776411.1| DEAD/DEAH box helicase [Vibrio parahaemolyticus K5030]
gi|308113318|gb|EFO50858.1| DEAD/DEAH box helicase [Vibrio parahaemolyticus K5030]
Length = 305
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 99/178 (55%), Gaps = 3/178 (1%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F EL L +++A+E+MG P++IQ IP L+G+ ++ S+ +G+G+T A++LP
Sbjct: 1 MIRTFAELDLDQNLLEAIEEMGYERPTKIQAEAIPQALDGRDILASAPTGTGKTAAFVLP 60
Query: 199 LVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
+Q L + KP R ++L T E A Q A+ ++ +L+ GGV +
Sbjct: 61 ALQYL---QDFPRRKPGPARILILTPTRELAMQVADQARALAKNTKLNIFTITGGVQYQE 117
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
D+ +++ATP + ++I+ C I ++VLDEAD + D GF P + ++ N
Sbjct: 118 HADILATTQDIVVATPGRLREYIDAERFDCRAIEWLVLDEADRMLDMGFAPTVDRLSN 175
>gi|365539546|ref|ZP_09364721.1| ATP-dependent RNA helicase SrmB [Vibrio ordalii ATCC 33509]
Length = 393
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 98/177 (55%), Gaps = 5/177 (2%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F +L L +I A+E MG P+++Q IP L+G+ ++ S+ +G+G+T A++LP
Sbjct: 1 MIKTFADLDLDPCIIAAIEDMGFERPTQVQAEAIPQALDGRDILASAPTGTGKTAAFVLP 60
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
+Q L P K P R ++L T E A Q A+ ++ RL+ GGV +
Sbjct: 61 ALQYLLD----FPRKRAGPARVLILTPTRELAMQVADQARELAKNTRLNIVTITGGVQYQ 116
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
D+ +++ATP ++++IE C I +++LDEAD + D GFGP + ++
Sbjct: 117 EHADILAKTQDIVVATPGRLMEYIEGERFDCRAIEWLILDEADRMLDMGFGPIVDRL 173
>gi|329906289|ref|ZP_08274385.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480]
gi|327547309|gb|EGF32148.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480]
Length = 504
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 99/177 (55%), Gaps = 1/177 (0%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F++ GL AE+++A+ G P+ IQ IP VL G+ V+ ++ +G+G+T + LP++Q+
Sbjct: 18 FEDFGLSAEILRALADQGYDHPTPIQAAAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQL 77
Query: 203 LRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L + + HP RA++L T E ADQ K L S++ GG+
Sbjct: 78 LLANASNSASPARHPVRALILTPTRELADQVAENVKAYCRHTPLRSTVVFGGMDMAPQTA 137
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
A + ++IATP +L H++ + ++ + +V+DEAD + D GF P++ +I+N L
Sbjct: 138 ALRAGVEIVIATPGRLLDHVQQKTLNLSQTQILVMDEADRMLDMGFLPDLQRIINLL 194
>gi|384426420|ref|YP_005635777.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. raphani
756C]
gi|341935520|gb|AEL05659.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. raphani
756C]
Length = 462
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 103/201 (51%), Gaps = 10/201 (4%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL +++A+ + G P+ IQ IP VL G ++ + +G+G+T A+ LPL+Q
Sbjct: 2 SFESLGLAPFLLRALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLLQ 61
Query: 202 MLRRDEALLPMK-PMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE 260
L P+ P PRA++L T E A Q + S R+ S++ GGV
Sbjct: 62 HL--GTTPQPVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQL 119
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 320
D + +LIA P ++ HIE R+V I ++LDEAD + D GF P I +IL L
Sbjct: 120 DALRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPR 179
Query: 321 SALKSNGQGFQTILVTAAIAE 341
Q QT+L +A E
Sbjct: 180 -------QDRQTLLFSATFEE 193
>gi|323497774|ref|ZP_08102788.1| ATP-dependent RNA helicase SrmB [Vibrio sinaloensis DSM 21326]
gi|323317121|gb|EGA70118.1| ATP-dependent RNA helicase SrmB [Vibrio sinaloensis DSM 21326]
Length = 398
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 98/176 (55%), Gaps = 3/176 (1%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F EL L ++ A+E+MG P++IQ IP L+G+ ++ S+ +G+G+T A++LP
Sbjct: 1 MIRNFAELELDPNLLLAIEEMGYDRPTQIQAEAIPQALDGRDILASAPTGTGKTAAFVLP 60
Query: 199 LVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
+Q L + KP R ++L T E A Q A+ ++ +L+ GGV +
Sbjct: 61 ALQYL---QDFPRRKPGPARVLILTPTRELAMQVAEQARALAKHTKLNIFTITGGVQYQE 117
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
D+ +++ATP ++++I C I +++LDEAD + D GFGP + ++
Sbjct: 118 HADILGKTQDVVVATPGRLMEYINAERFDCRAIEWLILDEADRMLDMGFGPTVDRL 173
>gi|71731568|gb|EAO33629.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
fastidiosa Ann-1]
Length = 446
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 72/216 (33%), Positives = 113/216 (52%), Gaps = 10/216 (4%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F+ LGL +++A+ + G +P+ IQ IP L G ++ ++ +G+G+T A+ LP++Q
Sbjct: 2 NFETLGLLPSLLRALSEQGYEIPTPIQQQAIPLALAGHDLLAAAQTGTGKTAAFGLPVLQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L A + PRA+VL T E A Q + + R+ S++ GGV D
Sbjct: 62 RLM--AASSNVGAGKPRALVLTPTRELATQVHDSLRGYAKYQRVSSAVIYGGVGMGNQLD 119
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDS 321
V + +LIA P ++ HIE R+V + +VLDEAD + D GF P I +IL L
Sbjct: 120 VLRRGVDLLIACPGRLIDHIERRSVDLSGVGILVLDEADRMLDMGFLPSIKRILGKLPR- 178
Query: 322 ALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERD 357
Q QT+L +A AE + +QL+ C R+
Sbjct: 179 ------QNRQTLLFSATFAEPI-KQLALEFMCRPRE 207
>gi|254487565|ref|ZP_05100770.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. GAI101]
gi|214044434|gb|EEB85072.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. GAI101]
Length = 533
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 95/173 (54%), Gaps = 4/173 (2%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F +L L +++KA+E+ G P+ IQ IP L GK V+ + +G+G+T ++ LP++ M
Sbjct: 4 FSDLNLNPKVLKAIEEAGYETPTPIQAGAIPPALEGKDVLGIAQTGTGKTASFTLPMITM 63
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDV 262
L R A M PR++VLC T E A Q + L ++ GGVS + +
Sbjct: 64 LARGRARARM----PRSLVLCPTRELAAQVAENFDTYTKHLNLTKALLIGGVSFGEQDKL 119
Query: 263 SNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
+ + +LIATP ++ H E + D++ +V+DEAD + D GF P+I +I
Sbjct: 120 IDKGVDVLIATPGRLIDHFERGKLILSDVKIMVVDEADRMLDMGFIPDIERIF 172
>gi|254476293|ref|ZP_05089679.1| ATP-dependent RNA helicase RhlE [Ruegeria sp. R11]
gi|214030536|gb|EEB71371.1| ATP-dependent RNA helicase RhlE [Ruegeria sp. R11]
Length = 501
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 98/176 (55%), Gaps = 4/176 (2%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++ F +L L +++KA+E+ G P+ IQ IP L G+ V+ + +G+G+T ++ LP+
Sbjct: 1 MTKFSDLNLNPKVLKAIEEAGYESPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPM 60
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
+ +L R A M PR++VLC T E A Q + L ++ GGVS K
Sbjct: 61 ITLLARGRARARM----PRSLVLCPTRELAAQVAENFDTYTKHLNLTKALLIGGVSFKEQ 116
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
+ + + + +LIATP +L H E + D++ +V+DEAD + D GF P+I +I
Sbjct: 117 DALIDKGVDVLIATPGRLLDHFERGKLILSDVKVMVVDEADRMLDMGFIPDIERIF 172
>gi|159043882|ref|YP_001532676.1| DEAD/DEAH box helicase [Dinoroseobacter shibae DFL 12]
gi|157911642|gb|ABV93075.1| DEAD/DEAH box helicase domain protein [Dinoroseobacter shibae DFL
12]
Length = 493
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 98/176 (55%), Gaps = 4/176 (2%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++ F +L L +++KA+ + G P+ IQ IP L G+ V+ + +G+G+T ++ LP+
Sbjct: 1 MTKFSDLNLDPKVLKAISEAGYDTPTPIQAEAIPPALEGRDVLGIAQTGTGKTASFTLPM 60
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
+ MLR+ A M PR++VL T E A Q + +L ++ GGVS K
Sbjct: 61 ITMLRKGRARARM----PRSLVLAPTRELAAQVAENFDIYAKHTKLTKALLIGGVSFKEQ 116
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
+ + + + +LIATP +L H E + D++ +V+DEAD + D GF P+I KI
Sbjct: 117 DLLIDKGVDVLIATPGRLLDHFERGKLILTDVKVMVVDEADRMLDMGFIPDIEKIF 172
>gi|71026488|ref|XP_762914.1| hypothetical protein [Theileria parva strain Muguga]
gi|68349866|gb|EAN30631.1| hypothetical protein TP03_0790 [Theileria parva]
Length = 1732
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 113/209 (54%), Gaps = 15/209 (7%)
Query: 120 QQLSNIASEREKSSGSNAEVVSSFQELGLKAEM-IKAVEKMG----------LFVPSEIQ 168
+ ++N R + + + ++ +LGL M I A+ + +F PS IQ
Sbjct: 932 RNMTNAQRNRIEKLNFSENAIENWTKLGLNKTMAISALSYLSHNYGNSLDNMVFKPSLIQ 991
Query: 169 CVGIPAVLNG--KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTE 226
+GI VLN K++V+S G G+TL YLLP++Q L+ DE +P PR +++ T
Sbjct: 992 KLGIEEVLNKSRKNLVISGAVGGGKTLTYLLPILQRLKEDELTKLREPSSPRCLIITPTT 1051
Query: 227 ESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNV 286
E + F K +SH ++ + GV+SK ++D + +++ATPS +L+ +++
Sbjct: 1052 ELCSEIFTAVKKLSHLVKITGLQVSKGVNSKTIKDKLKGLVDVVVATPSRLLKF--RKHL 1109
Query: 287 SCDDIRYVVLDEADTLFDRGFGPEISKIL 315
+ ++YVVL+E+D LF+ GF P + IL
Sbjct: 1110 KFNKLKYVVLEESDCLFNEGFFPLVYTIL 1138
>gi|410904152|ref|XP_003965556.1| PREDICTED: ATP-dependent RNA helicase DDX54-like [Takifugu
rubripes]
Length = 863
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 118/230 (51%), Gaps = 20/230 (8%)
Query: 116 QPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAV 175
+P+ +++ ++++K SG FQ +GL + K V + G VP+ IQ IP +
Sbjct: 56 EPDTREMVRAQNKKKKKSGG-------FQSMGLSYPVYKGVMRKGYKVPTPIQRKTIPVI 108
Query: 176 LNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHM 235
L+GK VV + +GSG+T A+L+P+ + L+ P RA++L T E A Q
Sbjct: 109 LDGKDVVAMARTGSGKTAAFLIPMFEKLK-----APQAQTGARALILSPTRELALQTMKF 163
Query: 236 AKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 295
K + +L +++ GG S + ++I TP ++ I++ N+ ++ YVV
Sbjct: 164 TKELGKFTKLKTALILGGDSMDDQFAALHENPDIIIGTPGRLMHVIKEMNLKLHNMEYVV 223
Query: 296 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 345
DEAD LF+ GF ++ +I+ D+ QT+L +A + ++L E
Sbjct: 224 FDEADRLFEMGFAEQLQEIIRRFPDTR--------QTLLFSATLPKLLVE 265
>gi|410627588|ref|ZP_11338327.1| ATP-dependent RNA helicase rhlE [Glaciecola mesophila KMM 241]
gi|410153080|dbj|GAC25096.1| ATP-dependent RNA helicase rhlE [Glaciecola mesophila KMM 241]
Length = 412
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 118/239 (49%), Gaps = 19/239 (7%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F++L L E+ +AV +G P+ IQ + IPA + GK ++ S+ +G+G+T A+LLP+ Q
Sbjct: 2 FEQLELDDELCRAVADLGYSEPTSIQQLVIPAAMEGKDILASAPTGTGKTAAFLLPVCQF 61
Query: 203 LRRDEALLPMKPMHP---RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
L L HP R ++L T E A Q ++ A +S + + GG++
Sbjct: 62 L------LDYPRRHPGSTRILILTPTRELAQQVYNQALELSRYTDIVCGVITGGINYGTD 115
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319
D + +L+ATP + +HIE + C DI ++LDEAD + D GF S I+N +
Sbjct: 116 RDTFEKNLDILVATPGRLFEHIEQESFDCRDIECLILDEADRMLDMGF----SSIVNQIS 171
Query: 320 DSA-LKSNGQGFQTILVTAAIAEMLGEQLSSLMECLE----RDNAGKVTAMLLEMDQAE 373
A + F L A I+ + L+ +E LE R GK+ L D A+
Sbjct: 172 AEARWRKQSMLFSATLEGAGISRFAKDILNDPVE-LEAASSRKEQGKIHQWLHIADDAK 229
>gi|410641783|ref|ZP_11352302.1| ATP-dependent RNA helicase rhlE [Glaciecola chathamensis S18K6]
gi|410647917|ref|ZP_11358334.1| ATP-dependent RNA helicase rhlE [Glaciecola agarilytica NO2]
gi|410132566|dbj|GAC06733.1| ATP-dependent RNA helicase rhlE [Glaciecola agarilytica NO2]
gi|410138685|dbj|GAC10489.1| ATP-dependent RNA helicase rhlE [Glaciecola chathamensis S18K6]
Length = 412
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 119/239 (49%), Gaps = 19/239 (7%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F++L L E+ +AV +G P+ IQ + IPA + GK ++ S+ +G+G+T A+LLP+ Q
Sbjct: 2 FEQLELDDELCRAVADLGYSEPTSIQQLVIPAAMEGKDILASAPTGTGKTAAFLLPVCQF 61
Query: 203 LRRDEALLPMKPMHP---RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
L L HP R ++L T E A Q ++ A +S + + GG++
Sbjct: 62 L------LDYPRRHPGSTRILILTPTRELAQQVYNQALELSRYTDIVCGVITGGINYGTD 115
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319
+D + +L+ATP + +HIE + C DI ++LDEAD + D GF S I+N +
Sbjct: 116 KDTLEKNLDILVATPGRLFEHIEQESFDCRDIECLILDEADRMLDMGF----SSIVNQIS 171
Query: 320 DSA-LKSNGQGFQTILVTAAIAEMLGEQLSSLMECLE----RDNAGKVTAMLLEMDQAE 373
A + F L A I+ + L+ +E LE R GK+ L D A+
Sbjct: 172 AEARWRKQSMLFSATLEGAGISRFAKDILNDPVE-LEAASSRKEQGKIHQWLHLADDAK 229
>gi|324503749|gb|ADY41623.1| ATP-dependent RNA helicase DDX54 [Ascaris suum]
Length = 799
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 107/201 (53%), Gaps = 14/201 (6%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
+Q LGL + KA+EK G P+ IQ IP +++GK VV S +GSG+T A+++P++Q
Sbjct: 40 WQALGLDHAVFKAIEKKGYRQPTPIQRKAIPLIIDGKDVVAMSRTGSGKTAAFVVPMLQK 99
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDV 262
L+R E RA+++ T E A Q F K + L + GG S +
Sbjct: 100 LKRREV------NGTRALLIAPTRELALQTFKFTKELGRFTGLRCAALVGGDSIEEQFGA 153
Query: 263 SNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSA 322
+ ++IATP +L I + N+ ++Y+V DEAD LF+ GF ++ +IL L D+
Sbjct: 154 IHEKPDIIIATPGRLLHLIIEMNLRLTTVQYLVFDEADRLFEMGFSEQLHEILKRLPDNR 213
Query: 323 LKSNGQGFQTILVTAAIAEML 343
QT+L +A + +ML
Sbjct: 214 --------QTLLFSATLPKML 226
>gi|28897279|ref|NP_796884.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus RIMD
2210633]
gi|260876244|ref|ZP_05888599.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus AN-5034]
gi|260896422|ref|ZP_05904918.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus Peru-466]
gi|260902727|ref|ZP_05911122.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus AQ4037]
gi|417321363|ref|ZP_12107903.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus 10329]
gi|28805488|dbj|BAC58768.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus RIMD
2210633]
gi|308088406|gb|EFO38101.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus Peru-466]
gi|308092964|gb|EFO42659.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus AN-5034]
gi|308107646|gb|EFO45186.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus AQ4037]
gi|328472043|gb|EGF42920.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus 10329]
Length = 407
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 99/178 (55%), Gaps = 3/178 (1%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F EL L +++A+E+MG P++IQ IP L+G+ ++ S+ +G+G+T A++LP
Sbjct: 1 MIRTFAELDLDQNLLEAIEEMGYERPTKIQAEAIPQALDGRDILASAPTGTGKTAAFVLP 60
Query: 199 LVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
+Q L + KP R ++L T E A Q A+ ++ +L+ GGV +
Sbjct: 61 ALQYL---QDFPRRKPGPARILILTPTRELAMQVADQARALAKNTKLNIFTITGGVQYQE 117
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
D+ +++ATP + ++I+ C I ++VLDEAD + D GF P + ++ N
Sbjct: 118 HADILATTQDIVVATPGRLREYIDAERFDCRAIEWLVLDEADRMLDMGFAPTVDRLSN 175
>gi|343514926|ref|ZP_08751991.1| ATP-dependent RNA helicase SrmB [Vibrio sp. N418]
gi|342799292|gb|EGU34867.1| ATP-dependent RNA helicase SrmB [Vibrio sp. N418]
Length = 419
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 99/180 (55%), Gaps = 11/180 (6%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F +L L ++ A+E+MG P+++Q IP L G+ ++ S+ +G+G+T A+++P
Sbjct: 1 MIKNFADLDLDPNLLTAIEEMGFERPTQVQAQAIPQALEGRDILASAPTGTGKTAAFVIP 60
Query: 199 LVQML----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGV 254
+Q L RR KP R ++L T E A Q A+ ++ +L+ GGV
Sbjct: 61 ALQFLLDFPRR-------KPGPARMLILTPTRELAMQIADQARALAKNTKLNIFTITGGV 113
Query: 255 SSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+ D+ +++ATP ++++I+ C I +++LDEAD + D GFGP + K+
Sbjct: 114 QYQEHADILATTQDIVVATPGRLMEYIKAERFDCRAIEWLILDEADRMLDMGFGPTVDKL 173
>gi|421477961|ref|ZP_15925746.1| DEAD/DEAH box helicase [Burkholderia multivorans CF2]
gi|400225606|gb|EJO55753.1| DEAD/DEAH box helicase [Burkholderia multivorans CF2]
Length = 487
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 101/180 (56%), Gaps = 3/180 (1%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V ++F + GL A+++KA+ + G P+ IQ IP VL G+ V+ ++ +G+G+T ++ LP
Sbjct: 9 VDATFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLP 68
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSS 256
++Q L HP RA++L T E ADQ ++ + H L S++ GGV
Sbjct: 69 IIQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTP-LRSAVVFGGVDM 127
Query: 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ +LIATP +L H++ + + ++ +VLDEAD + D GF P++ +ILN
Sbjct: 128 NPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILN 187
>gi|28198088|ref|NP_778402.1| ATP-dependent RNA helicase [Xylella fastidiosa Temecula1]
gi|182680716|ref|YP_001828876.1| DEAD/DEAH box helicase [Xylella fastidiosa M23]
gi|386084233|ref|YP_006000515.1| ATP-dependent RNA helicase [Xylella fastidiosa subsp. fastidiosa
GB514]
gi|417559570|ref|ZP_12210477.1| Superfamily II DNA and RNA helicase [Xylella fastidiosa EB92.1]
gi|28056148|gb|AAO28051.1| ATP-dependent RNA helicase [Xylella fastidiosa Temecula1]
gi|182630826|gb|ACB91602.1| DEAD/DEAH box helicase domain protein [Xylella fastidiosa M23]
gi|307579180|gb|ADN63149.1| ATP-dependent RNA helicase [Xylella fastidiosa subsp. fastidiosa
GB514]
gi|338177898|gb|EGO80936.1| Superfamily II DNA and RNA helicase [Xylella fastidiosa EB92.1]
Length = 446
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 72/216 (33%), Positives = 113/216 (52%), Gaps = 10/216 (4%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F+ LGL +++A+ + G +P+ IQ IP L G ++ ++ +G+G+T A+ LP++Q
Sbjct: 2 NFETLGLLPSLLRALSEQGYEIPTPIQQQAIPLALAGHDLLAAAQTGTGKTAAFGLPVLQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L A + PRA+VL T E A Q + + R+ S++ GGV D
Sbjct: 62 RLM--AASSNVGAGKPRALVLTPTRELATQVHDSLRGYAKYQRVSSAVIYGGVGMGNQLD 119
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDS 321
V + +LIA P ++ HIE R+V + +VLDEAD + D GF P I +IL L
Sbjct: 120 VLRRGVDLLIACPGRLIDHIERRSVDLSGVGILVLDEADRMLDMGFLPSIKRILGKLPR- 178
Query: 322 ALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERD 357
Q QT+L +A AE + +QL+ C R+
Sbjct: 179 ------QNRQTLLFSATFAEPI-KQLALEFMCRPRE 207
>gi|221211662|ref|ZP_03584641.1| ATP-dependent RNA helicase RhlE [Burkholderia multivorans CGD1]
gi|221169023|gb|EEE01491.1| ATP-dependent RNA helicase RhlE [Burkholderia multivorans CGD1]
Length = 495
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 101/180 (56%), Gaps = 3/180 (1%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V ++F + GL A+++KA+ + G P+ IQ IP VL G+ V+ ++ +G+G+T ++ LP
Sbjct: 9 VDATFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLP 68
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSS 256
++Q L HP RA++L T E ADQ ++ + H L S++ GGV
Sbjct: 69 IIQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTP-LRSAVVFGGVDM 127
Query: 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ +LIATP +L H++ + + ++ +VLDEAD + D GF P++ +ILN
Sbjct: 128 NPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILN 187
>gi|386265185|ref|YP_005828677.1| ATP-dependent RNA helicase [Haemophilus influenzae R2846]
gi|309972421|gb|ADO95622.1| ATP-dependent RNA helicase [Haemophilus influenzae R2846]
Length = 439
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 97/179 (54%), Gaps = 11/179 (6%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+S F++ L E++KA+EK P+ IQ IPA + + V+ S+ +G+G+T A+LLP
Sbjct: 3 LSQFEQFDLSPELLKALEKKSYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPA 62
Query: 200 VQML----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS 255
+Q L RR KP PR +VL T E A Q A+ ++ L+ + GGV+
Sbjct: 63 LQHLLDYPRR-------KPGPPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVA 115
Query: 256 SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+ DV N +++ATP +LQ+I+ N C + ++ DEAD + GFG + KI
Sbjct: 116 YQNHGDVFNTNQDLVVATPGRLLQYIKAENFDCRSVEMLIFDEADRMLQMGFGQDAEKI 174
>gi|189351106|ref|YP_001946734.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
gi|189335128|dbj|BAG44198.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
Length = 487
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 101/180 (56%), Gaps = 3/180 (1%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V ++F + GL A+++KA+ + G P+ IQ IP VL G+ V+ ++ +G+G+T ++ LP
Sbjct: 9 VDATFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLP 68
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSS 256
++Q L HP RA++L T E ADQ ++ + H L S++ GGV
Sbjct: 69 IIQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTP-LRSAVVFGGVDM 127
Query: 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ +LIATP +L H++ + + ++ +VLDEAD + D GF P++ +ILN
Sbjct: 128 NPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILN 187
>gi|221199585|ref|ZP_03572629.1| dead/deah box helicase [Burkholderia multivorans CGD2M]
gi|221205515|ref|ZP_03578530.1| dead/deah box helicase [Burkholderia multivorans CGD2]
gi|221174353|gb|EEE06785.1| dead/deah box helicase [Burkholderia multivorans CGD2]
gi|221180870|gb|EEE13273.1| dead/deah box helicase [Burkholderia multivorans CGD2M]
Length = 487
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 101/180 (56%), Gaps = 3/180 (1%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V ++F + GL A+++KA+ + G P+ IQ IP VL G+ V+ ++ +G+G+T ++ LP
Sbjct: 9 VDATFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLP 68
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSS 256
++Q L HP RA++L T E ADQ ++ + H L S++ GGV
Sbjct: 69 IIQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTP-LRSAVVFGGVDM 127
Query: 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ +LIATP +L H++ + + ++ +VLDEAD + D GF P++ +ILN
Sbjct: 128 NPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILN 187
>gi|170046392|ref|XP_001850751.1| ATP-dependent RNA helicase vasa [Culex quinquefasciatus]
gi|167869172|gb|EDS32555.1| ATP-dependent RNA helicase vasa [Culex quinquefasciatus]
Length = 641
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 117/216 (54%), Gaps = 10/216 (4%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++SF E GL+ ++ V K G P+ IQ IP +++ + ++ + +GSG+T A+LLP+
Sbjct: 216 ITSFNESGLRDYLLTNVRKSGYLKPTPIQKYAIPIIMDKRDLMACAQTGSGKTAAFLLPI 275
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
+ L D M P +P +V+ T E A Q A+ + L + GG +++
Sbjct: 276 INTLLNDND--DMTPGNPFVVVVAPTRELALQISEEARKFARGTILKVVVAYGGTATRHQ 333
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319
D N +L+ATP +L ++ + V+ D +++VVLDEAD + D GF P + K++N
Sbjct: 334 IDNVNNGCHILVATPGRLLDFVDRQAVTFDRVKFVVLDEADRMLDMGFMPAVEKMMN--- 390
Query: 320 DSALKSNGQGFQTILVTAA----IAEMLGEQLSSLM 351
+KS + QT++ +A I E+ G+ L++ +
Sbjct: 391 HETMKSKEER-QTLMFSATFPGQIQELAGQFLNNYI 425
>gi|421467479|ref|ZP_15916098.1| DEAD/DEAH box helicase [Burkholderia multivorans ATCC BAA-247]
gi|400233671|gb|EJO63196.1| DEAD/DEAH box helicase [Burkholderia multivorans ATCC BAA-247]
Length = 487
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 101/180 (56%), Gaps = 3/180 (1%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V ++F + GL A+++KA+ + G P+ IQ IP VL G+ V+ ++ +G+G+T ++ LP
Sbjct: 9 VDATFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLP 68
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSS 256
++Q L HP RA++L T E ADQ ++ + H L S++ GGV
Sbjct: 69 IIQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTP-LRSAVVFGGVDM 127
Query: 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ +LIATP +L H++ + + ++ +VLDEAD + D GF P++ +ILN
Sbjct: 128 NPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILN 187
>gi|302762591|ref|XP_002964717.1| hypothetical protein SELMODRAFT_142751 [Selaginella moellendorffii]
gi|300166950|gb|EFJ33555.1| hypothetical protein SELMODRAFT_142751 [Selaginella moellendorffii]
Length = 420
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 62/164 (37%), Positives = 92/164 (56%), Gaps = 3/164 (1%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
FQ LG EMI A+ + + PSEIQ + V+ G S +++ +GSG+TLAYL PLVQ
Sbjct: 21 FQALGASQEMIAALSSLEIVRPSEIQALSYKQVMRGNSCIIADQTGSGKTLAYLAPLVQR 80
Query: 203 LRRDEALLPMKPM-HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA-LE 260
LR DE +PR +VL T E A Q + + +S L S + GG K +E
Sbjct: 81 LREDEEKGNFSTAKNPRVLVLAPTSELAMQVLSVCRALSTTCPLKSMVATGGFKWKTQVE 140
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 304
++++ P +++ATP L H+E+ + ++ VVLDE D LF+
Sbjct: 141 NLASGP-DIVVATPGRFLHHLEEETIQLGKLQSVVLDEVDILFE 183
>gi|300312872|ref|YP_003776964.1| ATP-dependent RNA helicase [Herbaspirillum seropedicae SmR1]
gi|300075657|gb|ADJ65056.1| ATP-dependent RNA helicase protein [Herbaspirillum seropedicae
SmR1]
Length = 487
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 98/177 (55%), Gaps = 1/177 (0%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F++ GL +++KA+ + G P+ IQ IP VL G+ V+ ++ +G+G+T + LP++Q
Sbjct: 18 FEDFGLSPDILKALAEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQR 77
Query: 203 LRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L + + HP RA++L T E ADQ L S++ GGV
Sbjct: 78 LLQHASHSASPARHPVRALILTPTRELADQVADNVAAYCRFTPLRSTVVFGGVDMAPQTA 137
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ A + ++IATP +L H++ + V+ + +V+DEAD + D GF P++ +I+N L
Sbjct: 138 ILRAGVEIVIATPGRLLDHVQQKTVNLSQTQILVMDEADRMLDMGFLPDLQRIINLL 194
>gi|254510324|ref|ZP_05122391.1| dead/deah box helicase domain protein [Rhodobacteraceae bacterium
KLH11]
gi|221534035|gb|EEE37023.1| dead/deah box helicase domain protein [Rhodobacteraceae bacterium
KLH11]
Length = 455
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 101/181 (55%), Gaps = 4/181 (2%)
Query: 136 NAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAY 195
N ++ F EL L +++KA+E+ G P+ IQ IPA L G+ V+ + +G+G+T ++
Sbjct: 2 NRTYMTKFNELNLNPKVLKAIEEAGYESPTPIQEGAIPAALEGRDVLGIAQTGTGKTASF 61
Query: 196 LLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS 255
LP++ +L R A M PR++VLC T E A Q + +L ++ GGVS
Sbjct: 62 TLPMITLLARGRARARM----PRSLVLCPTRELAAQVAENFDTYAKHLKLTKALLIGGVS 117
Query: 256 SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
K + + + + +LIATP +L H E + ++ +V+DEAD + D GF P+I +I
Sbjct: 118 FKEQDALIDRGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIF 177
Query: 316 N 316
+
Sbjct: 178 S 178
>gi|427785439|gb|JAA58171.1| Putative atp-dependent rna helicase ddx54 [Rhipicephalus
pulchellus]
Length = 816
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/210 (33%), Positives = 110/210 (52%), Gaps = 17/210 (8%)
Query: 136 NAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAY 195
N + FQ +GL ++K + K G P+ IQ IP VL G+ VV + +GSG+T A+
Sbjct: 51 NKKKSGGFQAMGLSHAILKGILKRGYKQPTPIQRKAIPVVLEGRDVVAMARTGSGKTAAF 110
Query: 196 LLPLVQMLRRDEALLPMKP-MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGV 254
L+P++ E L P PRA++L T E A Q AK + L S++ GG
Sbjct: 111 LVPIL------ERLGGRSPHTGPRALILSPTRELALQTHKFAKELGKFTDLRSTVILGGD 164
Query: 255 S-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISK 313
S E + P +LIATP L + + N+ + ++YVV DEAD LF+ GF ++++
Sbjct: 165 SMEDQFEAIHENP-DLLIATPGRFLHVVMEMNLRLNSVKYVVFDEADRLFEMGFQEQLTE 223
Query: 314 ILNPLKDSALKSNGQGFQTILVTAAIAEML 343
+L+ L +G QT+L +A + +L
Sbjct: 224 VLHRLP--------EGRQTLLFSATLPRLL 245
>gi|264679797|ref|YP_003279706.1| hypothetical protein CtCNB1_3664 [Comamonas testosteroni CNB-2]
gi|262210312|gb|ACY34410.1| hypothetical conserved protein [Comamonas testosteroni CNB-2]
Length = 453
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 91/164 (55%), Gaps = 1/164 (0%)
Query: 159 MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHP- 217
MG + IQ IP VL GK V+ ++ +G+G+T A+ LPL+Q L R E HP
Sbjct: 1 MGYESMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQRLMRHENASASPARHPV 60
Query: 218 RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV 277
RA+VL T E ADQ + +L S++ GG+ K + +L+ATP +
Sbjct: 61 RALVLLPTRELADQVAQQIALYAKHTKLRSTVVFGGMDMKPQTIELKKGVEVLVATPGRL 120
Query: 278 LQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDS 321
L HIE +NV + + YVVLDEAD + D GF P++ +IL+ L S
Sbjct: 121 LDHIEAKNVVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKS 164
>gi|153839366|ref|ZP_01992033.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus AQ3810]
gi|149747114|gb|EDM58102.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus AQ3810]
Length = 407
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 99/178 (55%), Gaps = 3/178 (1%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F EL L +++A+E+MG P++IQ IP L+G+ ++ S+ +G+G+T A++LP
Sbjct: 1 MIRTFAELDLDQNLLEAIEEMGYERPTKIQAEAIPQALDGRDILASAPTGTGKTAAFVLP 60
Query: 199 LVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
+Q L + KP R ++L T E A Q A+ ++ +L+ GGV +
Sbjct: 61 ALQYL---QDFPRRKPGPARILILTPTRELAMQVADQARALAKKTKLNIFTITGGVQYQE 117
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
D+ +++ATP + ++I+ C I ++VLDEAD + D GF P + ++ N
Sbjct: 118 HADILATTQDIVVATPGRLREYIDAERFDCRAIEWLVLDEADRMLDMGFAPTVDRLSN 175
>gi|161524137|ref|YP_001579149.1| DEAD/DEAH box helicase [Burkholderia multivorans ATCC 17616]
gi|160341566|gb|ABX14652.1| DEAD/DEAH box helicase domain protein [Burkholderia multivorans
ATCC 17616]
Length = 509
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 101/180 (56%), Gaps = 3/180 (1%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V ++F + GL A+++KA+ + G P+ IQ IP VL G+ V+ ++ +G+G+T ++ LP
Sbjct: 31 VDATFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLP 90
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSS 256
++Q L HP RA++L T E ADQ ++ + H L S++ GGV
Sbjct: 91 IIQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTP-LRSAVVFGGVDM 149
Query: 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ +LIATP +L H++ + + ++ +VLDEAD + D GF P++ +ILN
Sbjct: 150 NPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILN 209
>gi|386389052|ref|ZP_10073883.1| DEAD/DEAH box helicase [Haemophilus paraphrohaemolyticus HK411]
gi|385696213|gb|EIG26715.1| DEAD/DEAH box helicase [Haemophilus paraphrohaemolyticus HK411]
Length = 445
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 102/180 (56%), Gaps = 11/180 (6%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++++F+E L +++KA+ + G P+ +Q IP L+G+ ++ S+ +G+G+T A+LLP
Sbjct: 7 ILTTFEEFDLSPQLLKALNEKGYKRPTSVQAQTIPHALDGRDLLGSAPTGTGKTAAFLLP 66
Query: 199 LVQML----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGV 254
+Q L RR KP PR ++L T E A Q A+ ++ +L + GGV
Sbjct: 67 AIQHLLDYPRR-------KPGAPRILILTPTRELAMQVAEQAEALAKFTKLSIATITGGV 119
Query: 255 SSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+ + ++ N+ +++ATP ++Q+I++ N C + ++ DEAD + GFG + KI
Sbjct: 120 AYQNHGEIFNSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKI 179
>gi|350530261|ref|ZP_08909202.1| ATP-dependent RNA helicase SrmB [Vibrio rotiferianus DAT722]
Length = 407
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 99/178 (55%), Gaps = 3/178 (1%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F EL L +++A+E+MG P++IQ IP L+G+ ++ S+ +G+G+T A++LP
Sbjct: 1 MIRTFAELDLDQNLLEAIEEMGYERPTKIQAEAIPQALDGRDILASAPTGTGKTAAFVLP 60
Query: 199 LVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
+Q L + KP R ++L T E A Q A+ ++ +L+ GGV +
Sbjct: 61 ALQYL---QDFPRRKPGPARILILTPTRELAMQIADQARALAKNTKLNIFTITGGVQYQE 117
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
D+ +++ATP + ++I+ C I ++VLDEAD + D GF P + ++ N
Sbjct: 118 HADILATTQDIVVATPGRLREYIDAERFDCRAIEWLVLDEADRMLDMGFAPTVDRLSN 175
>gi|195389156|ref|XP_002053243.1| GJ23450 [Drosophila virilis]
gi|194151329|gb|EDW66763.1| GJ23450 [Drosophila virilis]
Length = 829
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 117/227 (51%), Gaps = 22/227 (9%)
Query: 128 EREKSSGSNAEVVSS---------FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNG 178
E+ +SG N +++ + FQ LGL E++K + K G VP+ IQ IP +L G
Sbjct: 16 EQNGTSGGNDDILKNKPKSKKSGGFQSLGLGFELLKGITKRGYKVPTPIQRKTIPLILEG 75
Query: 179 KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 238
+ VV + +GSG+T +L+P+ + L+R E P K RA++L T E A Q + K
Sbjct: 76 RDVVAMAKTGSGKTACFLIPMFEKLQRRE---PTKGA--RALILSPTRELAVQTYKFIKD 130
Query: 239 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 298
+ L + + GG S + + +++ATP L + ++ + I YVV DE
Sbjct: 131 LGRFMELKTILVLGGDSMDSQFSAIHTCPDVIVATPGRFLHLCVEMDLKLNSIEYVVFDE 190
Query: 299 ADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 345
AD LF+ GFG ++++ L+ L S Q ++ +A + ++L E
Sbjct: 191 ADRLFEMGFGEQLNETLHRLPSSR--------QMVMFSATLPKLLVE 229
>gi|387902864|ref|YP_006333203.1| ATP-dependent RNA helicase [Burkholderia sp. KJ006]
gi|387577756|gb|AFJ86472.1| ATP-dependent RNA helicase [Burkholderia sp. KJ006]
Length = 493
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 102/180 (56%), Gaps = 3/180 (1%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
++F + GL +++KA+ + G P+ IQ IP VL G+ V+ ++ +G+G+T ++ LP++
Sbjct: 11 ATFDQFGLAPDILKAIVEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPII 70
Query: 201 QMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSSKA 258
Q L + HP RA++L T E ADQ ++ + H A L S++ GGV
Sbjct: 71 QRLLPHASTSASPARHPVRALILTPTRELADQVAANVHAYAKHTA-LRSAVVFGGVDMNP 129
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +LIATP +L H++ + + ++ +VLDEAD + D GF P++ +ILN L
Sbjct: 130 QMAELRRGVEILIATPGRLLDHVQQKTANLGQVQMLVLDEADRMLDMGFLPDLQRILNLL 189
>gi|410621605|ref|ZP_11332451.1| ATP-dependent RNA helicase SrmB [Glaciecola pallidula DSM 14239 =
ACAM 615]
gi|410158843|dbj|GAC27825.1| ATP-dependent RNA helicase SrmB [Glaciecola pallidula DSM 14239 =
ACAM 615]
Length = 421
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 93/176 (52%), Gaps = 11/176 (6%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F +L L E+ +A+ MG P+ IQ + IP + GK ++ + +G+G+T A+LLP+ Q
Sbjct: 2 FDQLDLDDELCRAINDMGYERPTSIQSLVIPHAMEGKDILADAPTGTGKTAAFLLPVCQY 61
Query: 203 L----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
L R+D++ R ++L T E A+Q F AK I+ L + GG++
Sbjct: 62 LLDHPRKDDS-------STRVLILVPTRELANQVFEQAKAITKYTHLTCGVITGGINYGT 114
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+ +L+ATP + +HIE + C DI ++LDEAD + D GF + +I
Sbjct: 115 DRETLAGHCDILVATPGRLFEHIEQESFDCRDIESLILDEADRMLDMGFSSIVHQI 170
>gi|240950103|ref|ZP_04754398.1| ATP-dependent RNA helicase SrmB [Actinobacillus minor NM305]
gi|240295404|gb|EER46173.1| ATP-dependent RNA helicase SrmB [Actinobacillus minor NM305]
Length = 445
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 99/179 (55%), Gaps = 11/179 (6%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ +F+EL L +++KA+ K G P+ +Q IP L+G+ ++ S+ +G+G+T A+LLP
Sbjct: 7 ILTFEELDLSPQLLKALHKKGYKRPTSVQAQTIPYALDGRDLLGSAPTGTGKTAAFLLPA 66
Query: 200 VQML----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS 255
+Q L RR KP PR ++L T E A Q A+ ++ L + GGV+
Sbjct: 67 IQHLLDYPRR-------KPGAPRILILTPTRELAMQVAEQAEELAEFTNLSIATITGGVA 119
Query: 256 SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+ +V N +++ATP ++Q+I++ N C + ++ DEAD + GFG + KI
Sbjct: 120 YQNHGEVFNKNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKI 178
>gi|336125000|ref|YP_004567048.1| hypothetical protein VAA_00381 [Vibrio anguillarum 775]
gi|335342723|gb|AEH34006.1| hypothetical protein VAA_00381 [Vibrio anguillarum 775]
Length = 411
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 98/177 (55%), Gaps = 5/177 (2%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F +L L +I A+E MG P+++Q IP L+G+ ++ S+ +G+G+T A++LP
Sbjct: 1 MIKTFADLDLDPCIIAAIEDMGFERPTQVQAEAIPQALDGRDILASAPTGTGKTAAFVLP 60
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
+Q L P K P R ++L T E A Q A+ ++ RL+ GGV +
Sbjct: 61 ALQYLLD----FPRKRAGPARVLILTPTRELAMQVADQARELAKNTRLNIVTITGGVQYQ 116
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
D+ +++ATP ++++IE C I +++LDEAD + D GFGP + ++
Sbjct: 117 EHADILAKTQDIVVATPGRLMEYIEGERFDCRAIEWLILDEADRMLDMGFGPIVDRL 173
>gi|301615062|ref|XP_002936986.1| PREDICTED: probable ATP-dependent RNA helicase DDX41-like [Xenopus
(Silurana) tropicalis]
Length = 614
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 111/207 (53%), Gaps = 15/207 (7%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 172 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 231
Query: 200 VQMLRRDEALLPM-KPMHPRAIVLCTTEESADQGFHMAKFISHCARLD------SSMENG 252
+ E LP K P +++C + E A Q + ++ H + D +++ G
Sbjct: 232 IMFCLEQEKRLPFAKREGPYGLIICPSRELARQTHSIIEYYCHLLQEDNFPHLRTALCIG 291
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
G+S K + + M++ATP ++ ++ + VS D RY+ LDEAD + D GF +I
Sbjct: 292 GMSVKEQMETIKQGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEEDIR 351
Query: 313 KILNPLKDSALKSNGQGFQTILVTAAI 339
I + K GQ QT+L +A +
Sbjct: 352 TIFSYFK-------GQR-QTLLFSATM 370
>gi|415909527|ref|ZP_11553150.1| ATP-dependent RNA helicase [Herbaspirillum frisingense GSF30]
gi|407762572|gb|EKF71396.1| ATP-dependent RNA helicase [Herbaspirillum frisingense GSF30]
Length = 493
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 98/177 (55%), Gaps = 1/177 (0%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F++ GL +++KA+ + G P+ IQ IP VL G+ V+ ++ +G+G+T + LP++Q
Sbjct: 18 FEDFGLSPDILKALAEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQR 77
Query: 203 LRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L + + HP RA++L T E ADQ L S++ GGV
Sbjct: 78 LLQHASHSASPARHPVRALILTPTRELADQVADNVAAYCRFTPLRSTVVFGGVDMSPQTA 137
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ A + ++IATP +L H++ + V+ + +V+DEAD + D GF P++ +I+N L
Sbjct: 138 ILRAGVEIVIATPGRLLDHVQQKTVNLSQTQILVMDEADRMLDMGFLPDLQRIINLL 194
>gi|192362464|ref|YP_001982184.1| Superfamily II DNA and RNA helicase [Cellvibrio japonicus Ueda107]
gi|190688629|gb|ACE86307.1| Superfamily II DNA and RNA helicase [Cellvibrio japonicus Ueda107]
Length = 474
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 122/239 (51%), Gaps = 18/239 (7%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL+A++++A+ G P+ IQ IPAV+NG ++ ++ +G+G+T + LPL++
Sbjct: 2 SFESLGLRADILRAIADEGYSAPTPIQQQAIPAVINGGDILAAAQTGTGKTAGFTLPLLE 61
Query: 202 ML-RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE 260
L +RD P RA++L T E A Q + RL S++ GGVS
Sbjct: 62 KLSQRDPGKTPQGRRPVRALILTPTRELAAQVHDSVRTYGKYLRLRSAVVFGGVSINPQM 121
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 320
+ +L+ATP +L + V D+ +VLDEAD + D GF +I K+L L
Sbjct: 122 MTLRGGVDILVATPGRLLDLVNQNAVYLQDVEILVLDEADRMLDMGFIHDIKKVLALLPK 181
Query: 321 SALKSNGQGFQTILVTA-------AIAEMLGEQLSSLMECLERDNAG-KVTAMLLEMDQ 371
Q +L +A A+A+ L Q +L+E R+ A +V+ +L +D+
Sbjct: 182 QR--------QNLLFSATFSDDIKALADKLLNQ-PTLIEVARRNTASERVSQRVLPVDR 231
>gi|432885906|ref|XP_004074815.1| PREDICTED: ATP-dependent RNA helicase DDX54-like isoform 1 [Oryzias
latipes]
Length = 852
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 119/233 (51%), Gaps = 20/233 (8%)
Query: 113 SPPQPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGI 172
S +P+ ++L ++++K SG FQ +GL + K V K G VP+ IQ I
Sbjct: 56 SDVEPDTRELVRAQNKKKKKSGG-------FQSMGLSYPVYKGVMKKGYKVPTPIQRKTI 108
Query: 173 PAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQG 232
P +L+GK VV + +GSG+T A+L+P+ + L+ P RA+++ T E A Q
Sbjct: 109 PVILDGKDVVAMARTGSGKTAAFLVPMFEKLK-----APQASAGARALIMSPTRELALQT 163
Query: 233 FHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIR 292
K + A L +++ GG + + ++I TP ++ +++ N+ +
Sbjct: 164 MKFTKELGKFAGLKTALILGGDRMEDQFAALHENPDIIIGTPGRLMHVVKEMNLKLHSVE 223
Query: 293 YVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 345
YVV DEAD LF+ GF ++ +I+ L D+ QT+L +A + ++L E
Sbjct: 224 YVVFDEADRLFEMGFAEQLQEIIQRLPDTR--------QTLLFSATLPKLLVE 268
>gi|229520951|ref|ZP_04410373.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae TM 11079-80]
gi|229342184|gb|EEO07180.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae TM 11079-80]
Length = 423
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 100/177 (56%), Gaps = 5/177 (2%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F +L L +++A+E+MG P+++Q IP L+G+ V+ S+ +G+G+T A+++P
Sbjct: 1 MIKTFADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIP 60
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
+Q L P + P R ++L T E A Q A+ ++ RL+ GGV +
Sbjct: 61 ALQYLLD----FPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQ 116
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
D+ +++ATP +L++I+ C I +++LDEAD + D GFGP + ++
Sbjct: 117 EHADILATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRL 173
>gi|432885908|ref|XP_004074816.1| PREDICTED: ATP-dependent RNA helicase DDX54-like isoform 2 [Oryzias
latipes]
Length = 853
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 119/233 (51%), Gaps = 20/233 (8%)
Query: 113 SPPQPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGI 172
S +P+ ++L ++++K SG FQ +GL + K V K G VP+ IQ I
Sbjct: 57 SDVEPDTRELVRAQNKKKKKSGG-------FQSMGLSYPVYKGVMKKGYKVPTPIQRKTI 109
Query: 173 PAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQG 232
P +L+GK VV + +GSG+T A+L+P+ + L+ P RA+++ T E A Q
Sbjct: 110 PVILDGKDVVAMARTGSGKTAAFLVPMFEKLK-----APQASAGARALIMSPTRELALQT 164
Query: 233 FHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIR 292
K + A L +++ GG + + ++I TP ++ +++ N+ +
Sbjct: 165 MKFTKELGKFAGLKTALILGGDRMEDQFAALHENPDIIIGTPGRLMHVVKEMNLKLHSVE 224
Query: 293 YVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 345
YVV DEAD LF+ GF ++ +I+ L D+ QT+L +A + ++L E
Sbjct: 225 YVVFDEADRLFEMGFAEQLQEIIQRLPDTR--------QTLLFSATLPKLLVE 269
>gi|416060551|ref|ZP_11580900.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans serotype e str. SCC393]
gi|444333252|ref|ZP_21149116.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans serotype a str. A160]
gi|347998277|gb|EGY39211.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans serotype e str. SCC393]
gi|443551962|gb|ELT59590.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans serotype a str. A160]
Length = 443
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 96/176 (54%), Gaps = 11/176 (6%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F + L E++ A++K G P+ IQ IPA + G V+ S+ +G+G+T A+LLP +Q
Sbjct: 7 FADFDLAPELLNALQKKGYQRPTAIQQETIPAAMGGGDVLGSAPTGTGKTAAFLLPAIQH 66
Query: 203 L----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
L RR KP PR +VL T E A Q AK +++ +L + GGV+ +
Sbjct: 67 LLDYPRR-------KPGAPRVLVLTPTRELAMQVAEQAKELAYFTKLSIATITGGVAYQN 119
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
++ N +++ATP +LQ+I++ N C + ++ DEAD + GFG + KI
Sbjct: 120 HGEIFNKNQDIVVATPGRLLQYIKEENFDCRTVEILIFDEADRMLQMGFGQDAEKI 175
>gi|238028205|ref|YP_002912436.1| ATP-dependent RNA helicase 2 [Burkholderia glumae BGR1]
gi|237877399|gb|ACR29732.1| Putative ATP-dependent RNA helicase 2 [Burkholderia glumae BGR1]
Length = 480
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 102/182 (56%), Gaps = 3/182 (1%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V ++F + GL +++KA+ G P+ IQ IP VL+G+ V+ ++ +G+G+T ++ LP
Sbjct: 9 VDATFDQFGLAPDILKAIADQGYTKPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLP 68
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSS 256
++Q L HP RA++L T E ADQ ++ + H A L S++ GGV
Sbjct: 69 IIQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHSYAKHTA-LRSAVVFGGVDM 127
Query: 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ +LIATP +L H++ + + ++ +VLDEAD + D GF P++ +ILN
Sbjct: 128 NPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQMLVLDEADRMLDMGFLPDLQRILN 187
Query: 317 PL 318
L
Sbjct: 188 LL 189
>gi|307255928|ref|ZP_07537729.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|307260381|ref|ZP_07542088.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
gi|306861196|gb|EFM93189.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|306865632|gb|EFM97513.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
Length = 445
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 99/177 (55%), Gaps = 11/177 (6%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F+EL L +++KA+ K G P+ +Q IP L+G+ ++ S+ +G+G+T A+LLP +Q
Sbjct: 9 TFEELDLAPQLLKALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTAAFLLPAIQ 68
Query: 202 ML----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
L RR KP PR ++L T E A Q A+ + +L + GGV+ +
Sbjct: 69 HLLDYPRR-------KPGAPRILILTPTRELAMQVAEEAQAFAEFTKLSIATITGGVAYQ 121
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+V N+ +++ATP ++Q+I++ N C + ++ DEAD + GFG + KI
Sbjct: 122 NHGEVFNSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKI 178
>gi|307251282|ref|ZP_07533202.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|306856680|gb|EFM88816.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
Length = 445
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 99/177 (55%), Gaps = 11/177 (6%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F+EL L +++KA+ K G P+ +Q IP L+G+ ++ S+ +G+G+T A+LLP +Q
Sbjct: 9 TFEELDLAPQLLKALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTAAFLLPAIQ 68
Query: 202 ML----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
L RR KP PR ++L T E A Q A+ + +L + GGV+ +
Sbjct: 69 HLLDYPRR-------KPGAPRILILTPTRELAMQVAEEAQAFAEFTKLSIATITGGVAYQ 121
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+V N+ +++ATP ++Q+I++ N C + ++ DEAD + GFG + KI
Sbjct: 122 NHGEVFNSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKI 178
>gi|195998355|ref|XP_002109046.1| hypothetical protein TRIADDRAFT_52679 [Trichoplax adhaerens]
gi|190589822|gb|EDV29844.1| hypothetical protein TRIADDRAFT_52679 [Trichoplax adhaerens]
Length = 512
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 100/181 (55%), Gaps = 2/181 (1%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
SSF L L+ ++I ++ + + P+ IQ + IP + GK+V+ +S +GSG+T+AYL PL+
Sbjct: 104 SSFSRLFLRDDVIDSLANINITTPTAIQSLAIPKIAAGKNVLCASETGSGKTIAYLAPLI 163
Query: 201 QMLRRDE--ALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
++ +E L + PRA ++ + E A Q +AK + H ++ GG K
Sbjct: 164 HRIKEEEEKCGLITRLNRPRACIVVPSRELAQQTLKVAKSLCHVSKYRVVGVIGGKKQKL 223
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
LE P +++ATP ++++ + D+ ++VLDEADTLFD F +IL +
Sbjct: 224 LEKALETPTDVVVATPGMLIKYHRYNQIFFSDLTHLVLDEADTLFDESFYERSLEILEKI 283
Query: 319 K 319
K
Sbjct: 284 K 284
>gi|402565885|ref|YP_006615230.1| DEAD/DEAH box helicase [Burkholderia cepacia GG4]
gi|402247082|gb|AFQ47536.1| DEAD/DEAH box helicase domain protein [Burkholderia cepacia GG4]
Length = 574
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 101/180 (56%), Gaps = 3/180 (1%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V ++F + GL A+++KA+ + G P+ IQ IP VL G+ V+ ++ +G+G+T ++ LP
Sbjct: 83 VDATFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLP 142
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSS 256
++Q L HP RA++L T E ADQ ++ + H L S++ GGV
Sbjct: 143 IIQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTP-LRSAVVFGGVDM 201
Query: 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ +LIATP +L H++ + + ++ +VLDEAD + D GF P++ +ILN
Sbjct: 202 NPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILN 261
>gi|134296504|ref|YP_001120239.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
vietnamiensis G4]
gi|134139661|gb|ABO55404.1| DEAD/DEAH box helicase domain protein [Burkholderia vietnamiensis
G4]
Length = 512
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 102/180 (56%), Gaps = 3/180 (1%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
++F + GL +++KA+ + G P+ IQ IP VL G+ V+ ++ +G+G+T ++ LP++
Sbjct: 33 ATFDQFGLAPDILKAIVEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPII 92
Query: 201 QMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSSKA 258
Q L + HP RA++L T E ADQ ++ + H A L S++ GGV
Sbjct: 93 QRLLPHASTSASPARHPVRALILTPTRELADQVAANVHAYAKHTA-LRSAVVFGGVDMNP 151
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +LIATP +L H++ + + ++ +VLDEAD + D GF P++ +ILN L
Sbjct: 152 QMAELRRGVEILIATPGRLLDHVQQKTANLGQVQMLVLDEADRMLDMGFLPDLQRILNLL 211
>gi|269964515|ref|ZP_06178755.1| Superfamily II DNA and RNA helicase [Vibrio alginolyticus 40B]
gi|269830752|gb|EEZ84971.1| Superfamily II DNA and RNA helicase [Vibrio alginolyticus 40B]
Length = 403
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 99/178 (55%), Gaps = 3/178 (1%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F EL L +++A+E+MG P++IQ IP L+G+ ++ S+ +G+G+T A++LP
Sbjct: 1 MIRTFAELDLDQNLLEAIEEMGYERPTKIQAEAIPQALDGRDILASAPTGTGKTAAFVLP 60
Query: 199 LVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
+Q L + KP R ++L T E A Q A+ ++ +L+ GGV +
Sbjct: 61 ALQYL---QDFPRRKPGPARILILTPTRELAMQIADQARALAKNTKLNIFTITGGVQYQE 117
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
D+ +++ATP + ++I+ C I +++LDEAD + D GF P + ++ N
Sbjct: 118 HADILATTQDIVVATPGRLKEYIDAERFDCRAIEWLILDEADRMLDMGFAPTVDRLSN 175
>gi|422921886|ref|ZP_16955091.1| ATP-dependent RNA helicase srmB [Vibrio cholerae BJG-01]
gi|341647503|gb|EGS71581.1| ATP-dependent RNA helicase srmB [Vibrio cholerae BJG-01]
Length = 423
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 100/177 (56%), Gaps = 5/177 (2%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F +L L +++A+E+MG P+++Q IP L+G+ V+ S+ +G+G+T A+++P
Sbjct: 1 MIKTFADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIP 60
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
+Q L P + P R ++L T E A Q A+ ++ RL+ GGV +
Sbjct: 61 ALQYLLD----FPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQ 116
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
D+ +++ATP +L++I+ C I +++LDEAD + D GFGP + ++
Sbjct: 117 EHADILATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRL 173
>gi|417819516|ref|ZP_12466132.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HE39]
gi|423947618|ref|ZP_17733577.1| type III restriction enzyme, res subunit [Vibrio cholerae HE-40]
gi|423976888|ref|ZP_17737125.1| type III restriction enzyme, res subunit [Vibrio cholerae HE-46]
gi|340041078|gb|EGR02046.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HE39]
gi|408661658|gb|EKL32642.1| type III restriction enzyme, res subunit [Vibrio cholerae HE-40]
gi|408665986|gb|EKL36789.1| type III restriction enzyme, res subunit [Vibrio cholerae HE-46]
Length = 423
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 100/177 (56%), Gaps = 5/177 (2%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F +L L +++A+E+MG P+++Q IP L+G+ V+ S+ +G+G+T A+++P
Sbjct: 1 MIKTFADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIP 60
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
+Q L P + P R ++L T E A Q A+ ++ RL+ GGV +
Sbjct: 61 ALQYLLD----FPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQ 116
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
D+ +++ATP +L++I+ C I +++LDEAD + D GFGP + ++
Sbjct: 117 EHADILATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRL 173
>gi|307246946|ref|ZP_07529011.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|306852231|gb|EFM84471.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
Length = 449
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 99/177 (55%), Gaps = 11/177 (6%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F+EL L +++KA+ K G P+ +Q IP L+G+ ++ S+ +G+G+T A+LLP +Q
Sbjct: 9 TFEELDLAPQLLKALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTAAFLLPAIQ 68
Query: 202 ML----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
L RR KP PR ++L T E A Q A+ + +L + GGV+ +
Sbjct: 69 HLLDYPRR-------KPGAPRILILTPTRELAMQVAEEAQAFAEFTKLSIATITGGVAYQ 121
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+V N+ +++ATP ++Q+I++ N C + ++ DEAD + GFG + KI
Sbjct: 122 NHGEVFNSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKI 178
>gi|121728399|ref|ZP_01681427.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae V52]
gi|147674594|ref|YP_001216154.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O395]
gi|153215838|ref|ZP_01950170.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 1587]
gi|153802013|ref|ZP_01956599.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MZO-3]
gi|153829171|ref|ZP_01981838.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 623-39]
gi|227117035|ref|YP_002818931.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O395]
gi|229512921|ref|ZP_04402388.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae TMA 21]
gi|229525313|ref|ZP_04414718.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae bv. albensis
VL426]
gi|229530466|ref|ZP_04419854.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 12129(1)]
gi|254226532|ref|ZP_04920115.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae V51]
gi|254291900|ref|ZP_04962682.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae AM-19226]
gi|262169959|ref|ZP_06037649.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae RC27]
gi|262191213|ref|ZP_06049412.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae CT 5369-93]
gi|297580786|ref|ZP_06942712.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae RC385]
gi|384423906|ref|YP_005633264.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae LMA3984-4]
gi|417823781|ref|ZP_12470373.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HE48]
gi|419829280|ref|ZP_14352768.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-1A2]
gi|419832080|ref|ZP_14355545.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-61A2]
gi|419835580|ref|ZP_14359025.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae HC-46B1]
gi|421342154|ref|ZP_15792561.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-43B1]
gi|421350489|ref|ZP_15800855.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HE-25]
gi|421353468|ref|ZP_15803801.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HE-45]
gi|422916451|ref|ZP_16950789.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-02A1]
gi|423733943|ref|ZP_17707159.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-41B1]
gi|423817360|ref|ZP_17715391.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-55C2]
gi|423849398|ref|ZP_17719180.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-59A1]
gi|423879050|ref|ZP_17722785.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-60A1]
gi|423996872|ref|ZP_17740135.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae HC-02C1]
gi|424008228|ref|ZP_17751178.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae HC-44C1]
gi|424015575|ref|ZP_17755422.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae HC-55B2]
gi|424020685|ref|ZP_17760465.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae HC-59B1]
gi|424589905|ref|ZP_18029352.1| ATP-dependent RNA helicase srmB [Vibrio cholerae CP1037(10)]
gi|424624056|ref|ZP_18062533.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-50A1]
gi|424628551|ref|ZP_18066856.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-51A1]
gi|424632587|ref|ZP_18070703.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-52A1]
gi|424635673|ref|ZP_18073694.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-55A1]
gi|424639587|ref|ZP_18077483.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-56A1]
gi|424647670|ref|ZP_18085346.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-57A1]
gi|429887891|ref|ZP_19369396.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae PS15]
gi|443528571|ref|ZP_21094605.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-78A1]
gi|121629333|gb|EAX61765.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae V52]
gi|124114555|gb|EAY33375.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 1587]
gi|124122472|gb|EAY41215.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MZO-3]
gi|125620936|gb|EAZ49287.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae V51]
gi|146316477|gb|ABQ21016.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O395]
gi|148875360|gb|EDL73495.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 623-39]
gi|150422186|gb|EDN14151.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae AM-19226]
gi|227012485|gb|ACP08695.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O395]
gi|229332239|gb|EEN97727.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 12129(1)]
gi|229338894|gb|EEO03911.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae bv. albensis
VL426]
gi|229350170|gb|EEO15123.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae TMA 21]
gi|259156570|gb|ACV96513.1| ATP-dependent RNA helicase SrmB [Vibrio fluvialis Ind1]
gi|262021693|gb|EEY40404.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae RC27]
gi|262032915|gb|EEY51454.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae CT 5369-93]
gi|297535202|gb|EFH74037.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae RC385]
gi|327483459|gb|AEA77866.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae LMA3984-4]
gi|340048410|gb|EGR09332.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HE48]
gi|341640084|gb|EGS64679.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-02A1]
gi|395945657|gb|EJH56322.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-43B1]
gi|395954611|gb|EJH65221.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HE-25]
gi|395954815|gb|EJH65424.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HE-45]
gi|408015598|gb|EKG53178.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-50A1]
gi|408020789|gb|EKG58076.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-52A1]
gi|408026789|gb|EKG63784.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-56A1]
gi|408027224|gb|EKG64206.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-55A1]
gi|408036082|gb|EKG72529.1| ATP-dependent RNA helicase srmB [Vibrio cholerae CP1037(10)]
gi|408036575|gb|EKG72999.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-57A1]
gi|408058594|gb|EKG93384.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-51A1]
gi|408621914|gb|EKK94906.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-1A2]
gi|408631713|gb|EKL04241.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-41B1]
gi|408636583|gb|EKL08720.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-55C2]
gi|408643758|gb|EKL15475.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-60A1]
gi|408644797|gb|EKL16471.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-59A1]
gi|408651981|gb|EKL23220.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-61A2]
gi|408854250|gb|EKL94014.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae HC-02C1]
gi|408858993|gb|EKL98663.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae HC-46B1]
gi|408861797|gb|EKM01364.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae HC-55B2]
gi|408866098|gb|EKM05487.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae HC-44C1]
gi|408866550|gb|EKM05930.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae HC-59B1]
gi|429225059|gb|EKY31345.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae PS15]
gi|443453145|gb|ELT16978.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-78A1]
Length = 423
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 100/177 (56%), Gaps = 5/177 (2%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F +L L +++A+E+MG P+++Q IP L+G+ V+ S+ +G+G+T A+++P
Sbjct: 1 MIKTFADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIP 60
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
+Q L P + P R ++L T E A Q A+ ++ RL+ GGV +
Sbjct: 61 ALQYLLD----FPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQ 116
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
D+ +++ATP +L++I+ C I +++LDEAD + D GFGP + ++
Sbjct: 117 EHADILATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRL 173
>gi|15640680|ref|NP_230309.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121587852|ref|ZP_01677609.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 2740-80]
gi|153818685|ref|ZP_01971352.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae NCTC 8457]
gi|153822294|ref|ZP_01974961.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae B33]
gi|227080841|ref|YP_002809392.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae M66-2]
gi|229505718|ref|ZP_04395228.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae BX 330286]
gi|229508708|ref|ZP_04398201.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae B33]
gi|229519543|ref|ZP_04408986.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae RC9]
gi|229608737|ref|YP_002879385.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MJ-1236]
gi|254850991|ref|ZP_05240341.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MO10]
gi|255743880|ref|ZP_05417836.1| ATP-dependent RNA helicase SrmB [Vibrio cholera CIRS 101]
gi|262156099|ref|ZP_06029218.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae INDRE 91/1]
gi|298500776|ref|ZP_07010579.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MAK 757]
gi|360034568|ref|YP_004936331.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O1 str.
2010EL-1786]
gi|379740519|ref|YP_005332488.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae IEC224]
gi|417812707|ref|ZP_12459366.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-49A2]
gi|417815574|ref|ZP_12462207.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HCUF01]
gi|418331709|ref|ZP_12942650.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-06A1]
gi|418336129|ref|ZP_12945030.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-23A1]
gi|418342965|ref|ZP_12949760.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-28A1]
gi|418348133|ref|ZP_12952868.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-43A1]
gi|418354556|ref|ZP_12957278.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-61A1]
gi|419825128|ref|ZP_14348634.1| type III restriction enzyme, res subunit [Vibrio cholerae
CP1033(6)]
gi|421315721|ref|ZP_15766293.1| ATP-dependent RNA helicase srmB [Vibrio cholerae CP1032(5)]
gi|421319517|ref|ZP_15770076.1| ATP-dependent RNA helicase srmB [Vibrio cholerae CP1038(11)]
gi|421323566|ref|ZP_15774094.1| ATP-dependent RNA helicase srmB [Vibrio cholerae CP1041(14)]
gi|421327962|ref|ZP_15778477.1| ATP-dependent RNA helicase srmB [Vibrio cholerae CP1042(15)]
gi|421330887|ref|ZP_15781369.1| ATP-dependent RNA helicase srmB [Vibrio cholerae CP1046(19)]
gi|421334554|ref|ZP_15785022.1| ATP-dependent RNA helicase srmB [Vibrio cholerae CP1048(21)]
gi|421338449|ref|ZP_15788885.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-20A2]
gi|421345563|ref|ZP_15795949.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-46A1]
gi|422890766|ref|ZP_16933178.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-40A1]
gi|422901644|ref|ZP_16937007.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-48A1]
gi|422905868|ref|ZP_16940713.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-70A1]
gi|422912462|ref|ZP_16946988.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HFU-02]
gi|422924947|ref|ZP_16957977.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-38A1]
gi|423144265|ref|ZP_17131879.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-19A1]
gi|423148917|ref|ZP_17136276.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-21A1]
gi|423152762|ref|ZP_17139960.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-22A1]
gi|423155567|ref|ZP_17142680.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-32A1]
gi|423159405|ref|ZP_17146377.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-33A2]
gi|423164088|ref|ZP_17150875.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-48B2]
gi|423730221|ref|ZP_17703539.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-17A1]
gi|423748411|ref|ZP_17711549.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-50A2]
gi|423891940|ref|ZP_17725627.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-62A1]
gi|423926714|ref|ZP_17730242.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-77A1]
gi|424001272|ref|ZP_17744361.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae HC-17A2]
gi|424005426|ref|ZP_17748410.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae HC-37A1]
gi|424023435|ref|ZP_17763099.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae HC-62B1]
gi|424026240|ref|ZP_17765856.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae HC-69A1]
gi|424585565|ref|ZP_18025159.1| ATP-dependent RNA helicase srmB [Vibrio cholerae CP1030(3)]
gi|424594260|ref|ZP_18033598.1| ATP-dependent RNA helicase srmB [Vibrio cholerae CP1040(13)]
gi|424598125|ref|ZP_18037323.1| ATP-dependent RNA helicase srmB [Vibrio Cholerae CP1044(17)]
gi|424600881|ref|ZP_18040038.1| ATP-dependent RNA helicase srmB [Vibrio cholerae CP1047(20)]
gi|424605857|ref|ZP_18044822.1| ATP-dependent RNA helicase srmB [Vibrio cholerae CP1050(23)]
gi|424609692|ref|ZP_18048550.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-39A1]
gi|424612495|ref|ZP_18051302.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-41A1]
gi|424616317|ref|ZP_18055008.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-42A1]
gi|424621251|ref|ZP_18059779.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-47A1]
gi|424644230|ref|ZP_18081984.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-56A2]
gi|424651873|ref|ZP_18089397.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-57A2]
gi|424655822|ref|ZP_18093124.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-81A2]
gi|440708953|ref|ZP_20889613.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 4260B]
gi|443502767|ref|ZP_21069756.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-64A1]
gi|443506681|ref|ZP_21073471.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-65A1]
gi|443510787|ref|ZP_21077451.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-67A1]
gi|443514349|ref|ZP_21080888.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-68A1]
gi|443518163|ref|ZP_21084580.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-71A1]
gi|443523029|ref|ZP_21089269.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-72A2]
gi|443530660|ref|ZP_21096676.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-7A1]
gi|443534420|ref|ZP_21100332.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-80A1]
gi|443538009|ref|ZP_21103865.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-81A1]
gi|449054023|ref|ZP_21732691.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O1 str. Inaba
G4222]
gi|9655098|gb|AAF93826.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121547888|gb|EAX57972.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 2740-80]
gi|126510765|gb|EAZ73359.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae NCTC 8457]
gi|126520190|gb|EAZ77413.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae B33]
gi|227008729|gb|ACP04941.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae M66-2]
gi|229344232|gb|EEO09207.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae RC9]
gi|229354232|gb|EEO19162.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae B33]
gi|229357941|gb|EEO22858.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae BX 330286]
gi|229371392|gb|ACQ61815.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MJ-1236]
gi|254846696|gb|EET25110.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MO10]
gi|255738511|gb|EET93900.1| ATP-dependent RNA helicase SrmB [Vibrio cholera CIRS 101]
gi|262030135|gb|EEY48780.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae INDRE 91/1]
gi|297540557|gb|EFH76615.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MAK 757]
gi|340042874|gb|EGR03837.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HCUF01]
gi|340043168|gb|EGR04128.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-49A2]
gi|341624967|gb|EGS50440.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-70A1]
gi|341626139|gb|EGS51545.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-48A1]
gi|341626754|gb|EGS52112.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-40A1]
gi|341640638|gb|EGS65219.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HFU-02]
gi|341648304|gb|EGS72368.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-38A1]
gi|356420432|gb|EHH73958.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-06A1]
gi|356421145|gb|EHH74650.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-21A1]
gi|356425968|gb|EHH79307.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-19A1]
gi|356433652|gb|EHH86839.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-23A1]
gi|356434162|gb|EHH87344.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-22A1]
gi|356437692|gb|EHH90778.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-28A1]
gi|356442736|gb|EHH95571.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-32A1]
gi|356447711|gb|EHI00499.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-43A1]
gi|356449961|gb|EHI02697.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-33A2]
gi|356453810|gb|EHI06470.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-61A1]
gi|356456225|gb|EHI08834.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-48B2]
gi|356645722|gb|AET25777.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O1 str.
2010EL-1786]
gi|378794029|gb|AFC57500.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae IEC224]
gi|395922462|gb|EJH33278.1| ATP-dependent RNA helicase srmB [Vibrio cholerae CP1032(5)]
gi|395922781|gb|EJH33596.1| ATP-dependent RNA helicase srmB [Vibrio cholerae CP1041(14)]
gi|395925842|gb|EJH36639.1| ATP-dependent RNA helicase srmB [Vibrio cholerae CP1038(11)]
gi|395930547|gb|EJH41294.1| ATP-dependent RNA helicase srmB [Vibrio cholerae CP1042(15)]
gi|395934740|gb|EJH45478.1| ATP-dependent RNA helicase srmB [Vibrio cholerae CP1046(19)]
gi|395937347|gb|EJH48066.1| ATP-dependent RNA helicase srmB [Vibrio cholerae CP1048(21)]
gi|395944885|gb|EJH55557.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-20A2]
gi|395948508|gb|EJH59153.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-46A1]
gi|395962360|gb|EJH72659.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-56A2]
gi|395963553|gb|EJH73816.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-57A2]
gi|395966375|gb|EJH76500.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-42A1]
gi|395974547|gb|EJH84072.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-47A1]
gi|395977411|gb|EJH86821.1| ATP-dependent RNA helicase srmB [Vibrio cholerae CP1030(3)]
gi|395979101|gb|EJH88465.1| ATP-dependent RNA helicase srmB [Vibrio cholerae CP1047(20)]
gi|408009418|gb|EKG47324.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-39A1]
gi|408016191|gb|EKG53745.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-41A1]
gi|408036855|gb|EKG73271.1| ATP-dependent RNA helicase srmB [Vibrio cholerae CP1040(13)]
gi|408044566|gb|EKG80472.1| ATP-dependent RNA helicase srmB [Vibrio Cholerae CP1044(17)]
gi|408046274|gb|EKG81974.1| ATP-dependent RNA helicase srmB [Vibrio cholerae CP1050(23)]
gi|408056861|gb|EKG91732.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-81A2]
gi|408611399|gb|EKK84760.1| type III restriction enzyme, res subunit [Vibrio cholerae
CP1033(6)]
gi|408627074|gb|EKK99899.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-17A1]
gi|408640810|gb|EKL12594.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-50A2]
gi|408658100|gb|EKL29172.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-77A1]
gi|408659130|gb|EKL30185.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-62A1]
gi|408848148|gb|EKL88201.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae HC-37A1]
gi|408849091|gb|EKL89124.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae HC-17A2]
gi|408873251|gb|EKM12453.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae HC-62B1]
gi|408881153|gb|EKM20063.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae HC-69A1]
gi|439975694|gb|ELP51806.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 4260B]
gi|443432887|gb|ELS75408.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-64A1]
gi|443436712|gb|ELS82829.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-65A1]
gi|443440274|gb|ELS89963.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-67A1]
gi|443444369|gb|ELS97643.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-68A1]
gi|443448205|gb|ELT04840.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-71A1]
gi|443450979|gb|ELT11243.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-72A2]
gi|443458861|gb|ELT26256.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-7A1]
gi|443462424|gb|ELT33463.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-80A1]
gi|443466442|gb|ELT41100.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-81A1]
gi|448266494|gb|EMB03721.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O1 str. Inaba
G4222]
Length = 423
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 100/177 (56%), Gaps = 5/177 (2%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F +L L +++A+E+MG P+++Q IP L+G+ V+ S+ +G+G+T A+++P
Sbjct: 1 MIKTFADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIP 60
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
+Q L P + P R ++L T E A Q A+ ++ RL+ GGV +
Sbjct: 61 ALQYLLD----FPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQ 116
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
D+ +++ATP +L++I+ C I +++LDEAD + D GFGP + ++
Sbjct: 117 EHADILATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRL 173
>gi|310816695|ref|YP_003964659.1| ATP-dependent RNA helicase RhlE [Ketogulonicigenium vulgare Y25]
gi|385234299|ref|YP_005795641.1| ATP-dependent RNA helicase [Ketogulonicigenium vulgare WSH-001]
gi|308755430|gb|ADO43359.1| putative ATP-dependent RNA helicase RhlE [Ketogulonicigenium
vulgare Y25]
gi|343463210|gb|AEM41645.1| ATP-dependent RNA helicase, putative [Ketogulonicigenium vulgare
WSH-001]
Length = 517
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 98/176 (55%), Gaps = 4/176 (2%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++ F +L L ++++AV + G P+ IQ IP L G+ V+ + +G+G+T ++ LP+
Sbjct: 1 MTEFSDLNLDPKVLQAVAEAGYTTPTPIQAGAIPEALAGRDVLGIAQTGTGKTASFTLPM 60
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
+Q+L R A M PR++VLC T E A Q + +L ++ GGVS K
Sbjct: 61 IQLLSRGRARARM----PRSLVLCPTRELAAQVAENFDMYAKYTKLTKALLIGGVSFKDQ 116
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
+ + + + +LIATP +L H E + ++ +V+DEAD + D GF P+I +I
Sbjct: 117 DTLIDRGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIF 172
>gi|407693805|ref|YP_006818594.1| ATP-dependent RNA helicase SrmB [Actinobacillus suis H91-0380]
gi|407389862|gb|AFU20355.1| ATP-dependent RNA helicase SrmB [Actinobacillus suis H91-0380]
Length = 445
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 99/177 (55%), Gaps = 11/177 (6%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F+EL L +++KA+ K G P+ +Q IP L+G+ ++ S+ +G+G+T A+LLP +Q
Sbjct: 9 TFEELDLAPQLLKALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTAAFLLPAIQ 68
Query: 202 ML----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
L RR KP PR ++L T E A Q A+ + +L + GGV+ +
Sbjct: 69 HLLDYPRR-------KPGAPRILILTPTRELAMQVAEEAQAFAEFTKLSIATITGGVAYQ 121
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+V N+ +++ATP ++Q+I++ N C + ++ DEAD + GFG + KI
Sbjct: 122 NHGEVFNSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKI 178
>gi|269959614|ref|ZP_06173995.1| Superfamily II DNA and RNA helicase [Vibrio harveyi 1DA3]
gi|424047884|ref|ZP_17785440.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae HENC-03]
gi|269835672|gb|EEZ89750.1| Superfamily II DNA and RNA helicase [Vibrio harveyi 1DA3]
gi|408883194|gb|EKM21981.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae HENC-03]
Length = 407
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 99/178 (55%), Gaps = 3/178 (1%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F EL L +++A+E+MG P++IQ IP L+G+ ++ S+ +G+G+T A++LP
Sbjct: 1 MIRTFAELDLDQNLLEAIEEMGYERPTKIQAEAIPQALDGRDILASAPTGTGKTAAFVLP 60
Query: 199 LVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
+Q L + KP R ++L T E A Q A+ ++ +L+ GGV +
Sbjct: 61 ALQYL---QDFPRRKPGPARILILTPTRELAMQVADQARALAKNTKLNIFTITGGVQYQE 117
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
D+ +++ATP + ++I+ C I +++LDEAD + D GF P + ++ N
Sbjct: 118 HADILATTQDIVVATPGRLREYIDAERFDCRAIEWLILDEADRMLDMGFAPTVDRLSN 175
>gi|422909174|ref|ZP_16943826.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HE-09]
gi|424658529|ref|ZP_18095786.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HE-16]
gi|341635764|gb|EGS60470.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HE-09]
gi|408055013|gb|EKG89967.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HE-16]
Length = 423
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 100/177 (56%), Gaps = 5/177 (2%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F +L L +++A+E+MG P+++Q IP L+G+ V+ S+ +G+G+T A+++P
Sbjct: 1 MIKTFADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIP 60
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
+Q L P + P R ++L T E A Q A+ ++ RL+ GGV +
Sbjct: 61 ALQYLLD----FPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQ 116
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
D+ +++ATP +L++I+ C I +++LDEAD + D GFGP + ++
Sbjct: 117 EHADILATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRL 173
>gi|307258113|ref|ZP_07539865.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
gi|306863476|gb|EFM95407.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
Length = 445
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 99/177 (55%), Gaps = 11/177 (6%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F+EL L +++KA+ K G P+ +Q IP L+G+ ++ S+ +G+G+T A+LLP +Q
Sbjct: 9 TFEELDLAPQLLKALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTAAFLLPAIQ 68
Query: 202 ML----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
L RR KP PR ++L T E A Q A+ + +L + GGV+ +
Sbjct: 69 HLLDYPRR-------KPGAPRILILTPTRELAMQVAEEAQAFAEFTKLSIATITGGVAYQ 121
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+V N+ +++ATP ++Q+I++ N C + ++ DEAD + GFG + KI
Sbjct: 122 NHGEVFNSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKI 178
>gi|14090416|gb|AAK53492.1|AF204145_33 putative ATP-dependent RNA helicase [Xanthomonas campestris pv.
campestris]
Length = 202
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 103/201 (51%), Gaps = 10/201 (4%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL +++A+ + G P+ IQ IP VL G ++ + +G+G+T A+ LPL+Q
Sbjct: 2 SFESLGLAPFLLRALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLLQ 61
Query: 202 MLRRDEALLPMK-PMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE 260
L P+ P PRA++L T E A Q + S R+ S++ GGV
Sbjct: 62 HLGTTPQ--PVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQL 119
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 320
D + +LIA P ++ HIE R+V I ++LDEAD + D GF P I +IL L
Sbjct: 120 DALRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPR 179
Query: 321 SALKSNGQGFQTILVTAAIAE 341
Q QT+L +A E
Sbjct: 180 -------QDRQTLLFSATFEE 193
>gi|145632667|ref|ZP_01788401.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 3655]
gi|229846508|ref|ZP_04466616.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 7P49H1]
gi|144986862|gb|EDJ93414.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 3655]
gi|229810601|gb|EEP46319.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 7P49H1]
Length = 439
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 98/179 (54%), Gaps = 11/179 (6%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+S F++ L E++KA+EK G P+ IQ IPA + + V+ S+ +G+G+T A+LLP
Sbjct: 3 LSQFEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPA 62
Query: 200 VQML----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS 255
+Q L RR KP P ++L T E A Q A+ ++ L+ + GGV+
Sbjct: 63 LQHLLDYPRR-------KPGPPCILILTPTRELAMQVAEQAEELAQFTHLNIATITGGVA 115
Query: 256 SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+ DV N +++ATP +LQ+I++ N C + ++ DEAD + GFG + KI
Sbjct: 116 YQNHGDVFNTNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKI 174
>gi|307262511|ref|ZP_07544156.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
gi|306867888|gb|EFM99719.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
Length = 449
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 99/177 (55%), Gaps = 11/177 (6%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F+EL L +++KA+ K G P+ +Q IP L+G+ ++ S+ +G+G+T A+LLP +Q
Sbjct: 9 TFEELDLAPQLLKALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTAAFLLPAIQ 68
Query: 202 ML----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
L RR KP PR ++L T E A Q A+ + +L + GGV+ +
Sbjct: 69 HLLDYPRR-------KPGAPRILILTPTRELAMQVAEEAQAFAEFTKLSIATITGGVAYQ 121
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+V N+ +++ATP ++Q+I++ N C + ++ DEAD + GFG + KI
Sbjct: 122 NHGEVFNSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKI 178
>gi|223041595|ref|ZP_03611794.1| ATP-dependent RNA helicase [Actinobacillus minor 202]
gi|223017570|gb|EEF15982.1| ATP-dependent RNA helicase [Actinobacillus minor 202]
Length = 443
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 99/179 (55%), Gaps = 11/179 (6%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ +F+EL L +++KA+ K G P+ +Q IP L+G+ ++ S+ +G+G+T A+LLP
Sbjct: 7 ILTFEELDLSPQLLKALHKKGYKRPTSVQAQTIPYALDGRDLLGSAPTGTGKTAAFLLPA 66
Query: 200 VQML----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS 255
+Q L RR KP PR ++L T E A Q A+ ++ L + GGV+
Sbjct: 67 IQHLLDYPRR-------KPGAPRILILTPTRELAMQVAEQAEELAEFTNLSIATITGGVA 119
Query: 256 SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+ +V N +++ATP ++Q+I++ N C + ++ DEAD + GFG + KI
Sbjct: 120 YQNHGEVFNKNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKI 178
>gi|422306154|ref|ZP_16393339.1| type III restriction enzyme, res subunit [Vibrio cholerae
CP1035(8)]
gi|408627218|gb|EKL00035.1| type III restriction enzyme, res subunit [Vibrio cholerae
CP1035(8)]
Length = 423
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 100/177 (56%), Gaps = 5/177 (2%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F +L L +++A+E+MG P+++Q IP L+G+ V+ S+ +G+G+T A+++P
Sbjct: 1 MIKTFADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIP 60
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
+Q L P + P R ++L T E A Q A+ ++ RL+ GGV +
Sbjct: 61 ALQYLLD----FPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQ 116
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
D+ +++ATP +L++I+ C I +++LDEAD + D GFGP + ++
Sbjct: 117 EHADILATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRL 173
>gi|336125600|ref|YP_004577556.1| ATP-dependent RNA helicase [Vibrio anguillarum 775]
gi|335343317|gb|AEH34599.1| ATP-dependent RNA helicase [Vibrio anguillarum 775]
Length = 421
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 107/224 (47%), Gaps = 12/224 (5%)
Query: 137 AEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYL 196
++ V FQ LGL ++ A++ +G P+++Q IP VL GK V+ + +G+G+T A+
Sbjct: 2 SDTVHPFQRLGLSTTLVSALQSLGFEQPTDVQSQAIPHVLAGKDVMAGAQTGTGKTAAFG 61
Query: 197 LPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSS 256
LP++Q ++A RA+VL T E A Q F + L GG S
Sbjct: 62 LPILQRFLDNQAEREANSKVVRALVLVPTRELAQQVFDSLSAYAQGTTLKIVTAYGGTSM 121
Query: 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ +LIATP ++ H+ RN+ +VLDEAD + D GF P+I +IL
Sbjct: 122 QVQTRNLRGGADILIATPGRLIDHLFVRNIILTQTEVLVLDEADRMLDMGFLPDIQRILK 181
Query: 317 PLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAG 360
+ D QT+ +A +++ +L + RD G
Sbjct: 182 RMNDER--------QTLFFSAT----FDDKIKALAHKMMRDPVG 213
>gi|83945168|ref|ZP_00957517.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Oceanicaulis sp. HTCC2633]
gi|83851338|gb|EAP89194.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Oceanicaulis sp. HTCC2633]
Length = 466
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 106/202 (52%), Gaps = 10/202 (4%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
+++ F + GL ++ A+ + G P+ IQ IPAV+ G ++ + +G+G+T A++LP
Sbjct: 17 ILTKFTDFGLNPSILTAISEQGYETPTPIQARAIPAVMKGHDLIGLAQTGTGKTAAFVLP 76
Query: 199 LVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
LV L + P + RA++L T E A Q K + +L S++ GGV +
Sbjct: 77 LVHQLLAENKQAPGRSC--RALILAPTRELAAQIEEQVKAYTAHTKLTSTVVFGGVKAGP 134
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +L+ATP +L H+ +R D R+V+LDEAD + D GF P I K+
Sbjct: 135 QIKALARGVDILVATPGRLLDHLGERKARLDLTRFVILDEADQMLDLGFIPAIRKL---- 190
Query: 319 KDSALKSNGQGFQTILVTAAIA 340
L+ G+ QT++ +A +A
Sbjct: 191 ----LRMVGEERQTLMFSATMA 208
>gi|223939310|ref|ZP_03631190.1| DEAD/DEAH box helicase domain protein [bacterium Ellin514]
gi|223892023|gb|EEF58504.1| DEAD/DEAH box helicase domain protein [bacterium Ellin514]
Length = 412
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 96/175 (54%), Gaps = 7/175 (4%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F LGL M+ V+ MG P+ IQ IP +L+G+ V+ S+ +G+G+T A+ LP++
Sbjct: 2 AFSNLGLSQTMVDGVKAMGYVEPTPIQLRAIPLILSGQDVIGSAQTGTGKTAAFALPILS 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L E+ P PR ++L T E A Q + + L +++ GGV D
Sbjct: 62 KL---ESHQP----RPRLLILEPTRELAAQVETAIRDFARFTNLRAAVLYGGVGYGRQMD 114
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
A + ++IATP +L H+E D I+Y+VLDEAD + D GF P++ +I++
Sbjct: 115 ALKAGVDIIIATPGRLLDHLERGTCKFDQIKYLVLDEADRMLDMGFLPDVRRIVD 169
>gi|190151364|ref|YP_001969889.1| ATP-dependent RNA helicase [Actinobacillus pleuropneumoniae serovar
7 str. AP76]
gi|307264721|ref|ZP_07546300.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
gi|189916495|gb|ACE62747.1| ATP-dependent RNA helicase [Actinobacillus pleuropneumoniae serovar
7 str. AP76]
gi|306869917|gb|EFN01682.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
Length = 445
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 99/177 (55%), Gaps = 11/177 (6%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F+EL L +++KA+ K G P+ +Q IP L+G+ ++ S+ +G+G+T A+LLP +Q
Sbjct: 9 TFEELDLAPQLLKALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTAAFLLPAIQ 68
Query: 202 ML----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
L RR KP PR ++L T E A Q A+ + +L + GGV+ +
Sbjct: 69 HLLDYPRR-------KPGAPRILILTPTRELAMQVAEEAQAFAEFTKLSIATITGGVAYQ 121
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+V N+ +++ATP ++Q+I++ N C + ++ DEAD + GFG + KI
Sbjct: 122 NHGEVFNSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKI 178
>gi|85703303|ref|ZP_01034407.1| ATP-dependent RNA helicase RhlE [Roseovarius sp. 217]
gi|85672231|gb|EAQ27088.1| ATP-dependent RNA helicase RhlE [Roseovarius sp. 217]
Length = 515
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 99/177 (55%), Gaps = 4/177 (2%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++ F +L L +++KA+E+ G P+ IQ IP L G+ V+ + +G+G+T ++ LP+
Sbjct: 1 MTKFSDLNLNPKVLKAIEEAGYETPTPIQAEAIPHALQGRDVLGIAQTGTGKTASFTLPM 60
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
+ +L R A M PR++VLC T E A Q S +L ++ GGVS K
Sbjct: 61 LSLLSRGRARARM----PRSLVLCPTRELAAQVAENFDTYSKHLKLTKALLIGGVSFKEQ 116
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ + + + +LIATP +L H E + ++ +V+DEAD + D GF P+I +I +
Sbjct: 117 DKLIDKGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFS 173
>gi|165977454|ref|YP_001653047.1| ATP-dependent RNA helicase SrmB [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
gi|165877555|gb|ABY70603.1| ATP-dependent RNA helicase protein [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
Length = 449
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 99/177 (55%), Gaps = 11/177 (6%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F+EL L +++KA+ K G P+ +Q IP L+G+ ++ S+ +G+G+T A+LLP +Q
Sbjct: 9 TFEELDLAPQLLKALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTAAFLLPAIQ 68
Query: 202 ML----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
L RR KP PR ++L T E A Q A+ + +L + GGV+ +
Sbjct: 69 HLLDYPRR-------KPGAPRILILTPTRELAMQVSEEAQAFAEFTKLSIATITGGVAYQ 121
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+V N+ +++ATP ++Q+I++ N C + ++ DEAD + GFG + KI
Sbjct: 122 NHGEVFNSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKI 178
>gi|254229671|ref|ZP_04923081.1| dead/deah box helicase domain protein [Vibrio sp. Ex25]
gi|262395214|ref|YP_003287068.1| ATP-dependent RNA helicase SrmB [Vibrio sp. Ex25]
gi|151937792|gb|EDN56640.1| dead/deah box helicase domain protein [Vibrio sp. Ex25]
gi|262338808|gb|ACY52603.1| ATP-dependent RNA helicase SrmB [Vibrio sp. Ex25]
Length = 407
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 99/178 (55%), Gaps = 3/178 (1%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F EL L +++A+E+MG P++IQ IP L+G+ ++ S+ +G+G+T A++LP
Sbjct: 1 MIRTFAELDLDQNLLEAIEEMGYKRPTKIQAEAIPQALDGRDILASAPTGTGKTAAFVLP 60
Query: 199 LVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
+Q L + KP R ++L T E A Q A+ ++ +L+ GGV +
Sbjct: 61 ALQYL---QDFPRRKPGPARILILTPTRELAMQIADQARALAKNTKLNIFTITGGVQYQE 117
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
D+ +++ATP + ++I+ C I +++LDEAD + D GF P + ++ N
Sbjct: 118 HADILATTQDIVVATPGRLKEYIDAERFDCRAIEWLILDEADRMLDMGFAPTVDRLSN 175
>gi|68249023|ref|YP_248135.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 86-028NP]
gi|68057222|gb|AAX87475.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 86-028NP]
Length = 439
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 98/179 (54%), Gaps = 11/179 (6%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+S F++ L E++KA+EK G P+ IQ IPA + + V+ S+ +G+G+T A+LLP
Sbjct: 3 LSQFEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPA 62
Query: 200 VQML----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS 255
+Q L RR KP P ++L T E A Q A+ ++ L+ + GGV+
Sbjct: 63 LQHLLDYPRR-------KPGPPCILILTPTRELAMQVAEQAEELAQFTHLNIATITGGVA 115
Query: 256 SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+ DV N +++ATP +LQ+I++ N C + ++ DEAD + GFG + KI
Sbjct: 116 YQNHGDVFNTNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKI 174
>gi|406979406|gb|EKE01199.1| hypothetical protein ACD_21C00193G0001 [uncultured bacterium]
Length = 368
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 121/221 (54%), Gaps = 22/221 (9%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F +L L ++++AV+ G P+ IQ IP++L+GK +V S+ +G+G+T AY+LP +Q
Sbjct: 2 TFTQLQLHEKILQAVKACGYDKPTPIQVKAIPSILSGKDLVASAQTGTGKTAAYVLPCLQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARL---DSSMENGGVS-SK 257
+L K PR ++L T E A Q + K I+ + + + GGVS +
Sbjct: 62 LLG------AHKSSKPRVLILAPTRELAGQ---ITKVIAKYGKFMKPNIASFVGGVSYDR 112
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNP 317
L+++S PI ++IATP ++ H+E+R + I ++LDEAD + D GF P I +I
Sbjct: 113 QLKELSR-PIDIVIATPGRLMDHMENRRLDLSRIEMLILDEADRMLDMGFIPAIKRI--- 168
Query: 318 LKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDN 358
+K+ + QT+L +A + L + L++ R N
Sbjct: 169 -----VKATPKSRQTLLFSATADDKLMSVMKDLLKNPVRIN 204
>gi|343509731|ref|ZP_08746993.1| ATP-dependent RNA helicase SrmB [Vibrio scophthalmi LMG 19158]
gi|342803528|gb|EGU38878.1| ATP-dependent RNA helicase SrmB [Vibrio scophthalmi LMG 19158]
Length = 412
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 99/180 (55%), Gaps = 11/180 (6%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F +L L ++ A+E+MG P+++Q IP L G+ ++ S+ +G+G+T A+++P
Sbjct: 1 MIKNFADLDLDPNLLTAIEEMGFERPTQVQAQAIPQALEGRDILASAPTGTGKTAAFVIP 60
Query: 199 LVQML----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGV 254
+Q L RR KP R ++L T E A Q A+ ++ +L+ GGV
Sbjct: 61 ALQFLLDFPRR-------KPGPARMLILTPTRELAMQIADQARALAKNTKLNIFTITGGV 113
Query: 255 SSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+ D+ +++ATP ++++I+ C I +++LDEAD + D GFGP + K+
Sbjct: 114 QYQEHADILATTQDIVVATPGRLMEYIKAERFDCRAIEWLILDEADRMLDMGFGPTVDKL 173
>gi|254251800|ref|ZP_04945118.1| DEAD/DEAH box helicase-like [Burkholderia dolosa AUO158]
gi|124894409|gb|EAY68289.1| DEAD/DEAH box helicase-like [Burkholderia dolosa AUO158]
Length = 511
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 101/180 (56%), Gaps = 3/180 (1%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
++F + GL A+++KA+ + G P+ IQ IP VL G+ V+ ++ +G+G+T ++ LP++
Sbjct: 33 ANFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPII 92
Query: 201 QMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSSKA 258
Q L HP RA++L T E ADQ ++ + H L S++ GGV
Sbjct: 93 QRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTP-LRSAVVFGGVDMNP 151
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +LIATP +L H++ + + ++ +VLDEAD + D GF P++ +ILN L
Sbjct: 152 QMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLL 211
>gi|303251782|ref|ZP_07337953.1| ATP-dependent RNA helicase SrmB [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|307249083|ref|ZP_07531090.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|302649212|gb|EFL79397.1| ATP-dependent RNA helicase SrmB [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|306854371|gb|EFM86567.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
Length = 445
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 99/177 (55%), Gaps = 11/177 (6%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F+EL L +++KA+ K G P+ +Q IP L+G+ ++ S+ +G+G+T A+LLP +Q
Sbjct: 9 TFEELDLAPQLLKALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTAAFLLPAIQ 68
Query: 202 ML----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
L RR KP PR ++L T E A Q A+ + +L + GG++ +
Sbjct: 69 HLLDYPRR-------KPGAPRILILTPTRELAMQVAEEAQAFAEFTKLSIATITGGIAYQ 121
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+V N+ +++ATP ++Q+I++ N C + ++ DEAD + GFG + KI
Sbjct: 122 NHGEVFNSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKI 178
>gi|451975526|ref|ZP_21926713.1| dead/deah box helicase domain protein [Vibrio alginolyticus E0666]
gi|451930509|gb|EMD78216.1| dead/deah box helicase domain protein [Vibrio alginolyticus E0666]
Length = 407
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 99/178 (55%), Gaps = 3/178 (1%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F EL L +++A+E+MG P++IQ IP L+G+ ++ S+ +G+G+T A++LP
Sbjct: 1 MIRTFAELDLDQNLLEAIEEMGYERPTKIQAEAIPQALDGRDILASAPTGTGKTAAFVLP 60
Query: 199 LVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
+Q L + KP R ++L T E A Q A+ ++ +L+ GGV +
Sbjct: 61 ALQYL---QDFPRRKPGPARILILTPTRELAMQIADQARALAKNTKLNIFTITGGVQYQE 117
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
D+ +++ATP + ++I+ C I +++LDEAD + D GF P + ++ N
Sbjct: 118 HADILATTQDIVVATPGRLKEYIDAERFDCRAIEWLILDEADRMLDMGFAPTVDRLSN 175
>gi|91226790|ref|ZP_01261443.1| ATP-dependent RNA helicase SrmB [Vibrio alginolyticus 12G01]
gi|91188921|gb|EAS75205.1| ATP-dependent RNA helicase SrmB [Vibrio alginolyticus 12G01]
Length = 407
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 99/178 (55%), Gaps = 3/178 (1%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F EL L +++A+E+MG P++IQ IP L+G+ ++ S+ +G+G+T A++LP
Sbjct: 1 MIRTFAELDLDQNLLEAIEEMGYERPTKIQAEAIPQALDGRDILASAPTGTGKTAAFVLP 60
Query: 199 LVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
+Q L + KP R ++L T E A Q A+ ++ +L+ GGV +
Sbjct: 61 ALQYL---QDFPRRKPGPARILILTPTRELAMQIADQARALAKNTKLNIFTITGGVQYQE 117
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
D+ +++ATP + ++I+ C I +++LDEAD + D GF P + ++ N
Sbjct: 118 HADILATTQDIVVATPGRLKEYIDAERFDCRAIEWLILDEADRMLDMGFAPTVDRLSN 175
>gi|440730386|ref|ZP_20910475.1| ATP-dependent RNA helicase, partial [Xanthomonas translucens
DAR61454]
gi|440378920|gb|ELQ15528.1| ATP-dependent RNA helicase, partial [Xanthomonas translucens
DAR61454]
Length = 439
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 102/211 (48%), Gaps = 7/211 (3%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL +++A+ + G P+ IQ IP L G ++ + +G+G+T A+ LPL+Q
Sbjct: 2 SFESLGLAPFLLRALAEQGYETPTPIQLQAIPLALAGHDLMAGAQTGTGKTAAFGLPLLQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L + PRA++L T E A Q + S R+ S+ GGV D
Sbjct: 62 HLGTSPQPVGNGARRPRALILTPTRELATQVHDSLRGYSKYLRIPSTTIYGGVGMGNQLD 121
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDS 321
+ +LIA P +L H+E R+V I +VLDEAD + D GF P I +IL L
Sbjct: 122 ALRRGVDLLIACPGRLLDHLERRSVDLSGIEILVLDEADRMLDMGFLPSIKRILAKLPK- 180
Query: 322 ALKSNGQGFQTILVTAAIAEMLGEQLSSLME 352
Q QT+L +A E + + M
Sbjct: 181 ------QNRQTLLFSATFEEGIKQLAREFMH 205
>gi|83942648|ref|ZP_00955109.1| ATP-dependent RNA helicase RhlE [Sulfitobacter sp. EE-36]
gi|83846741|gb|EAP84617.1| ATP-dependent RNA helicase RhlE [Sulfitobacter sp. EE-36]
Length = 559
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 100/177 (56%), Gaps = 6/177 (3%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++ F +L L +++KA+++ G P+ IQ IP L GK V+ + +G+G+T ++ LP+
Sbjct: 21 MTKFSDLNLNPKVLKAIDEAGYETPTPIQAGAIPPALEGKDVLGIAQTGTGKTASFTLPM 80
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSSKA 258
+ +L R A M PR++VLC T E A Q + + H +L ++ GGVS
Sbjct: 81 ITLLARGRARARM----PRSLVLCPTRELAAQVAENFDTYTKHL-KLTKALLIGGVSFGE 135
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
+ + + + +LIATP ++ H E + D++ +V+DEAD + D GF P+I +I
Sbjct: 136 QDKLIDKGVDVLIATPGRLIDHFERGKLILSDVKIMVVDEADRMLDMGFIPDIERIF 192
>gi|257783884|ref|YP_003179101.1| DEAD/DEAH box helicase [Atopobium parvulum DSM 20469]
gi|257472391|gb|ACV50510.1| DEAD/DEAH box helicase domain protein [Atopobium parvulum DSM
20469]
Length = 450
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 119/241 (49%), Gaps = 34/241 (14%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F ELGL +++ V +G VP+ +Q IPAVL GK VV S+ +G+G+T A++LP +Q
Sbjct: 4 TFAELGLNEQILAGVTTLGFSVPTPVQTAAIPAVLAGKDVVASAQTGTGKTAAFMLPTLQ 63
Query: 202 ML---RRDEALLP-----------------------MKPMHPRAIVLCTTEESADQGFHM 235
+ + D+A P + +PRA+++ T E A Q ++
Sbjct: 64 RIAVEKHDKAEKPDGKRNAAAERNAVAERNAKRGTGKRNAYPRALIVTPTRELAAQIDNV 123
Query: 236 AKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 295
AK + + + GG K +L+ATP ++ ++ ++ S +DI+ +V
Sbjct: 124 AKSVCASTGQQAVIVTGGAHYKHQIAALQKGCDVLVATPGRLIDLLDKKHTSLEDIQVLV 183
Query: 296 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLE 355
LDEAD + D GF P + +I+ L + QT+L +A + + + +L++ E
Sbjct: 184 LDEADRMLDMGFWPSVHRIMEQLP--------KAHQTLLFSATLPASITSTIDALLKDPE 235
Query: 356 R 356
R
Sbjct: 236 R 236
>gi|348618050|ref|ZP_08884583.1| ATP-dependent RNA helicase rhlE [Candidatus Glomeribacter
gigasporarum BEG34]
gi|347816755|emb|CCD29246.1| ATP-dependent RNA helicase rhlE [Candidatus Glomeribacter
gigasporarum BEG34]
Length = 427
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 100/189 (52%), Gaps = 13/189 (6%)
Query: 137 AEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYL 196
+++ S F GL +++K++ + G VP+ IQ IPA L G+ V+ ++ +G+G+T +
Sbjct: 2 SDIFSHFSHFGLHDDLLKSIAEQGYAVPTPIQVHAIPAALAGRDVMGAAQTGTGKTAGFS 61
Query: 197 LPLVQMLRRDEALLPMK------PMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSM 249
LP++Q L LP+ HP RA++L T E ADQ + + L S
Sbjct: 62 LPILQRL------LPLANASVSPARHPVRALILTPTRELADQVAANIRAYAQYTLLRSLA 115
Query: 250 ENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGP 309
GGV KA + +L+ATP +L H+E +N+ +VLDEAD + D GF P
Sbjct: 116 VFGGVDMKAQAGELRRGVEILVATPGRLLDHLEQKNLQLGQTGILVLDEADRMLDMGFLP 175
Query: 310 EISKILNPL 318
++ KIL L
Sbjct: 176 DLQKILAAL 184
>gi|78067127|ref|YP_369896.1| DEAD/DEAH box helicase [Burkholderia sp. 383]
gi|77967872|gb|ABB09252.1| DEAD/DEAH box helicase-like protein [Burkholderia sp. 383]
Length = 527
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 102/182 (56%), Gaps = 3/182 (1%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V ++F + GL A+++KA+ + G P+ IQ IP VL G+ V+ ++ +G+G+T ++ LP
Sbjct: 31 VDATFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLP 90
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSS 256
++Q L HP RA++L T E ADQ ++ + H L S++ GGV
Sbjct: 91 IIQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTP-LRSAVVFGGVDM 149
Query: 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ +LIATP +L H++ + + ++ +VLDEAD + D GF P++ +ILN
Sbjct: 150 NPQMAELRRGVEVLIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILN 209
Query: 317 PL 318
L
Sbjct: 210 LL 211
>gi|32035479|ref|ZP_00135436.1| COG0513: Superfamily II DNA and RNA helicases [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|126209462|ref|YP_001054687.1| ATP-dependent RNA helicase SrmB [Actinobacillus pleuropneumoniae
serovar 5b str. L20]
gi|303250442|ref|ZP_07336639.1| ATP-dependent RNA helicase SrmB [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|307251483|ref|ZP_07533390.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|126098254|gb|ABN75082.1| ATP-dependent RNA helicase [Actinobacillus pleuropneumoniae serovar
5b str. L20]
gi|302650430|gb|EFL80589.1| ATP-dependent RNA helicase SrmB [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306860947|gb|EFM92953.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
Length = 445
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 99/177 (55%), Gaps = 11/177 (6%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F+EL L +++KA+ K G P+ +Q +P L+G+ ++ S+ +G+G+T A+LLP +Q
Sbjct: 9 TFEELDLAPQLLKALNKKGYKRPTSVQAETVPHALDGRDLLGSAPTGTGKTAAFLLPAIQ 68
Query: 202 ML----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
L RR KP PR ++L T E A Q A+ + +L + GGV+ +
Sbjct: 69 HLLDYPRR-------KPGAPRILILTPTRELAMQVAEEAQAFAEFTKLSIATITGGVAYQ 121
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+V N+ +++ATP ++Q+I++ N C + ++ DEAD + GFG + KI
Sbjct: 122 NHGEVFNSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKI 178
>gi|251793531|ref|YP_003008260.1| ATP-dependent RNA helicase SrmB [Aggregatibacter aphrophilus
NJ8700]
gi|247534927|gb|ACS98173.1| ATP-dependent RNA helicase SrmB [Aggregatibacter aphrophilus
NJ8700]
Length = 441
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 100/179 (55%), Gaps = 11/179 (6%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++ F + L E++KA++K G P+ IQ +PA ++G+ V+ S+ +G+G+T A+LLP
Sbjct: 4 LTQFADFDLAPELLKAIQKKGYQRPTAIQQETLPAAMDGEDVLGSAPTGTGKTAAFLLPA 63
Query: 200 VQML----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS 255
+Q L RR KP PR ++L T E A Q A+ ++ +L + GGV+
Sbjct: 64 IQHLLDYPRR-------KPGAPRVLILTPTRELAMQVAEQAEELACFTKLSIATITGGVA 116
Query: 256 SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+ ++ N +++ATP +LQ+I++ N C + ++ DEAD + GFG + KI
Sbjct: 117 YQNHGEIFNKNQDIVVATPGRLLQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKI 175
>gi|56696327|ref|YP_166684.1| ATP-dependent RNA helicase RhlE [Ruegeria pomeroyi DSS-3]
gi|56678064|gb|AAV94730.1| ATP-dependent RNA helicase RhlE [Ruegeria pomeroyi DSS-3]
Length = 471
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 99/177 (55%), Gaps = 4/177 (2%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++ F EL L +++KA+E+ G P+ IQ IP L G+ V+ + +G+G+T ++ LP+
Sbjct: 1 MTKFSELNLNPKVLKAIEEAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPM 60
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
+ +L R A M PR++VLC T E A Q + +L ++ GGVS K
Sbjct: 61 ITLLARGRARARM----PRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQ 116
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ + + + +LIATP +L H E + ++ +V+DEAD + D GF P+I +I +
Sbjct: 117 DALIDRGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFS 173
>gi|89070152|ref|ZP_01157481.1| ATP-dependent RNA helicase RhlE [Oceanicola granulosus HTCC2516]
gi|89044269|gb|EAR50415.1| ATP-dependent RNA helicase RhlE [Oceanicola granulosus HTCC2516]
Length = 477
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 98/177 (55%), Gaps = 4/177 (2%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++ F +L L +++KA+E+ G P+ IQ IP L G+ V+ + +G+G+T ++ LP+
Sbjct: 1 MTKFSDLNLNPKVLKAIEEAGYETPTPIQEGAIPPALEGRDVLGIAQTGTGKTASFTLPM 60
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
+ +L R A M PR++VLC T E A Q + +L ++ GGVS K
Sbjct: 61 ITLLHRGRARARM----PRSLVLCPTRELAAQVAENFDIYAKHTKLTKALLIGGVSFKEQ 116
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ + + + +LIATP +L H E + ++ +V+DEAD + D GF P+I +I
Sbjct: 117 DQLIDKGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFG 173
>gi|254363222|ref|ZP_04979270.1| ATP-dependent RNA helicase [Mannheimia haemolytica PHL213]
gi|452744146|ref|ZP_21943995.1| ATP-dependent RNA helicase SrmB [Mannheimia haemolytica serotype 6
str. H23]
gi|452745636|ref|ZP_21945469.1| ATP-dependent RNA helicase SrmB [Mannheimia haemolytica serotype 6
str. H23]
gi|153095119|gb|EDN75666.1| ATP-dependent RNA helicase [Mannheimia haemolytica PHL213]
gi|452086238|gb|EME02628.1| ATP-dependent RNA helicase SrmB [Mannheimia haemolytica serotype 6
str. H23]
gi|452087771|gb|EME04145.1| ATP-dependent RNA helicase SrmB [Mannheimia haemolytica serotype 6
str. H23]
Length = 444
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 98/177 (55%), Gaps = 11/177 (6%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F+EL L +++KA+ G P+ IQ IPA L G+ ++ S+ +G+G+T A+LLP +Q
Sbjct: 6 TFEELDLSPQLLKALAHKGYNRPTAIQQATIPAALEGRDLLGSAPTGTGKTAAFLLPAIQ 65
Query: 202 ML----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
L RR KP PR ++L T E A Q A+ ++ +L + GGV+ +
Sbjct: 66 HLLDYPRR-------KPGAPRILILTPTRELAMQVAEQAQALAKFTQLSIATITGGVAYQ 118
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+V N +++ATP ++Q+I++ N C + ++ DEAD + GFG + KI
Sbjct: 119 NHGEVFNKNQDIVVATPGRLMQYIKEENFDCRAVEVLIFDEADRMLQMGFGQDAEKI 175
>gi|340786226|ref|YP_004751691.1| ATP-dependent RNA helicase [Collimonas fungivorans Ter331]
gi|340551493|gb|AEK60868.1| ATP-dependent RNA helicase [Collimonas fungivorans Ter331]
Length = 506
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 104/204 (50%), Gaps = 3/204 (1%)
Query: 116 QPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAV 175
QPE Q S I SE + F + GL ++++A+ G P+ IQ IP V
Sbjct: 5 QPEIQ--SEIQSEMQADPAVPTTPTVRFADFGLSPDILRALNDQGYVHPTPIQAEAIPVV 62
Query: 176 LNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFH 234
L G+ V+ ++ +G+G+T + LP++Q+L HP RA++L T E ADQ
Sbjct: 63 LQGRDVMGAAQTGTGKTAGFSLPIIQLLLAHANTSASPARHPVRALILTPTRELADQVAE 122
Query: 235 MAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYV 294
K L S++ GGV + I ++IATP +L H++ + ++ + +
Sbjct: 123 NVKAYCRHTPLRSTVVFGGVDIAPQTAALRSGIEIVIATPGRLLDHVQQKTLNLSQTQIL 182
Query: 295 VLDEADTLFDRGFGPEISKILNPL 318
V+DEAD + D GF P++ +I+N L
Sbjct: 183 VMDEADRMLDMGFLPDLQRIINLL 206
>gi|261251247|ref|ZP_05943821.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|417956619|ref|ZP_12599583.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|260938120|gb|EEX94108.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|342809459|gb|EGU44578.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891 = ATCC
33934]
Length = 419
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 93/175 (53%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
+ FQ LGL + ++ +EK+ +P+E+Q IP VL G+ V+ + +G+G+T A+ LP++
Sbjct: 3 TDFQSLGLCSTLLTTLEKLNFKLPTEVQKHAIPHVLEGQDVLAGAQTGTGKTAAFGLPII 62
Query: 201 QMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE 260
Q L E ++ A+VL T E A Q F + + GG S
Sbjct: 63 QRLLESETTRDIQSNDVLALVLVPTRELAQQVFDNITLYAQDTIIKVVTAYGGTSMNVQT 122
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
+ +LIATP +L H+ +N++ +Y+VLDEAD + D GF P+I +IL
Sbjct: 123 RNLDQGCDILIATPGRLLDHLFCKNINLTKTQYLVLDEADRMLDMGFMPDIKRIL 177
>gi|406973607|gb|EKD96982.1| hypothetical protein ACD_23C01154G0002, partial [uncultured
bacterium]
Length = 475
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 97/178 (54%), Gaps = 1/178 (0%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F +L L + +AV +MG + IQ IP VL G+ V+ ++ +G+G+T A+ LPL+Q
Sbjct: 2 AFAQLQLADPLARAVAEMGYETMTPIQAQAIPVVLQGRDVMGAAQTGTGKTAAFALPLMQ 61
Query: 202 MLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE 260
+ + E HP RA+VL T E A Q + L S++ GG+ K
Sbjct: 62 RMLKHENASTSPARHPVRALVLLPTRELAVQVAEQVELYGKYTNLRSAVVFGGMDMKPQT 121
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +L+ATP +L HIE +N + + YVVLDEAD + D GF P++ +IL+ L
Sbjct: 122 IELKKGVEVLVATPGRLLDHIEAKNCVLNQVEYVVLDEADRMLDIGFLPDLQRILSYL 179
>gi|408823675|ref|ZP_11208565.1| ATP-dependent RNA helicase [Pseudomonas geniculata N1]
Length = 471
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 101/198 (51%), Gaps = 7/198 (3%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL +++A+ + G P+ IQ IP L G+ ++ + +G+G+T A+ LPL+Q
Sbjct: 2 SFESLGLAPFLLRALAEQGYENPTPIQQQAIPLALAGRDLLAGAQTGTGKTAAFGLPLLQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L + P PRA++L T E A Q + S R+ S+ GGV D
Sbjct: 62 HLGTASQEVRSGPRKPRALILAPTRELATQVHDSLRGYSKYLRIPSACIYGGVGMGNQLD 121
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDS 321
+ + +L+A P ++ H+E R++ I +VLDEAD + D GF P I +IL L
Sbjct: 122 ILRRGVDLLVACPGRLIDHLERRSIDLSGIELLVLDEADRMLDMGFLPSIKRILAKLPK- 180
Query: 322 ALKSNGQGFQTILVTAAI 339
Q QT+L +A
Sbjct: 181 ------QNRQTLLFSATF 192
>gi|386716961|ref|YP_006183287.1| ATP-dependent RNA helicase RhlE [Stenotrophomonas maltophilia D457]
gi|384076523|emb|CCH11104.1| ATP-dependent RNA helicase RhlE [Stenotrophomonas maltophilia D457]
Length = 477
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 101/196 (51%), Gaps = 7/196 (3%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL +++A+ + G P+ IQ IP L G+ ++ + +G+G+T A+ LPL+Q
Sbjct: 2 SFESLGLAPFLLRALAEQGYENPTPIQQQAIPLALAGRDLLAGAQTGTGKTAAFGLPLLQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L + P PRA++L T E A Q + S R+ S+ GGV D
Sbjct: 62 HLGTASQEVRAGPRKPRALILAPTRELATQVHDSLRGYSKYLRIPSACIYGGVGMGNQLD 121
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDS 321
+ + +L+A P ++ H+E R+V I ++LDEAD + D GF P I +IL L
Sbjct: 122 ILRRGVDLLVACPGRLIDHLERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILAKLPK- 180
Query: 322 ALKSNGQGFQTILVTA 337
Q QT+L +A
Sbjct: 181 ------QNRQTLLFSA 190
>gi|344205917|ref|YP_004791058.1| DEAD/DEAH box helicase [Stenotrophomonas maltophilia JV3]
gi|343777279|gb|AEM49832.1| DEAD/DEAH box helicase domain protein [Stenotrophomonas maltophilia
JV3]
Length = 473
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 101/196 (51%), Gaps = 7/196 (3%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL +++A+ + G P+ IQ IP L G+ ++ + +G+G+T A+ LPL+Q
Sbjct: 2 SFESLGLAPFLLRALAEQGYENPTPIQQQAIPLALAGRDLLAGAQTGTGKTAAFGLPLLQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L + P PRA++L T E A Q + S R+ S+ GGV D
Sbjct: 62 HLGTASQEVRAGPRKPRALILAPTRELATQVHDSLRGYSKYLRIPSACIYGGVGMGNQLD 121
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDS 321
+ + +L+A P ++ H+E R+V I ++LDEAD + D GF P I +IL L
Sbjct: 122 ILRRGVDLLVACPGRLIDHLERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILAKLPK- 180
Query: 322 ALKSNGQGFQTILVTA 337
Q QT+L +A
Sbjct: 181 ------QNRQTLLFSA 190
>gi|254524903|ref|ZP_05136958.1| probable ATP-dependent rna helicase protein [Stenotrophomonas sp.
SKA14]
gi|219722494|gb|EED41019.1| probable ATP-dependent rna helicase protein [Stenotrophomonas sp.
SKA14]
Length = 473
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 101/198 (51%), Gaps = 7/198 (3%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL +++A+ + G P+ IQ IP L G+ ++ + +G+G+T A+ LPL+Q
Sbjct: 2 SFESLGLAPFLLRALAEQGYENPTPIQQQAIPLALAGRDLLAGAQTGTGKTAAFGLPLLQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L + P PRA++L T E A Q + S R+ S+ GGV D
Sbjct: 62 HLGTASQEVRSGPRKPRALILAPTRELATQVHDSLRGYSKYLRIPSACIYGGVGMGNQLD 121
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDS 321
+ + +L+A P ++ H+E R++ I +VLDEAD + D GF P I +IL L
Sbjct: 122 ILRRGVDLLVACPGRLIDHLERRSIDLSGIELLVLDEADRMLDMGFLPSIKRILAKLPK- 180
Query: 322 ALKSNGQGFQTILVTAAI 339
Q QT+L +A
Sbjct: 181 ------QNRQTLLFSATF 192
>gi|359407402|ref|ZP_09199879.1| DNA/RNA helicase, superfamily II [SAR116 cluster alpha
proteobacterium HIMB100]
gi|356677441|gb|EHI49785.1| DNA/RNA helicase, superfamily II [SAR116 cluster alpha
proteobacterium HIMB100]
Length = 471
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 102/180 (56%), Gaps = 4/180 (2%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
+ SSF +LGL E++ AV +G P+ IQ IP+VL G+ ++ S+ +G+G+T ++ LP
Sbjct: 23 ISSSFIDLGLSNELVNAVTLLGYEQPTPIQSASIPSVLMGRDILGSAQTGTGKTASFTLP 82
Query: 199 LVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
++ +L A K PR+++L T E A Q + S ++ ++ GGVS
Sbjct: 83 MIDILAAGRA----KARMPRSLILAPTRELAAQVAESFEKFSVNHKMSMALLIGGVSFSD 138
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ + + +LIATP +L H E V D++ +V+DEAD + D GF P++ +I++ L
Sbjct: 139 QDAALSKGVDVLIATPGRLLDHFERGKVLLQDVKILVIDEADRMLDMGFIPDVERIVSYL 198
>gi|449144109|ref|ZP_21774926.1| ATP-dependent RNA helicase SrmB [Vibrio mimicus CAIM 602]
gi|449080209|gb|EMB51126.1| ATP-dependent RNA helicase SrmB [Vibrio mimicus CAIM 602]
Length = 416
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 99/177 (55%), Gaps = 5/177 (2%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F +L L +++A+E+MG P+++Q IP L+G+ V+ S+ +G+G+T A+ +P
Sbjct: 1 MIKTFADLELDPVLLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFAIP 60
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
+Q L P + P R ++L T E A Q A+ ++ RL+ GGV +
Sbjct: 61 ALQYLLD----FPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQ 116
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
D+ +++ATP +L++I+ C I +++LDEAD + D GFGP + ++
Sbjct: 117 EHADILATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRL 173
>gi|395763810|ref|ZP_10444479.1| ATP-dependent RNA helicase [Janthinobacterium lividum PAMC 25724]
Length = 515
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 101/179 (56%), Gaps = 3/179 (1%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F + GL E+ +A+ G P+ IQ IP VL G+ V+ ++ +G+G+T + LP++Q
Sbjct: 38 TFADFGLAPEIQRALTDQGYTHPTPIQEQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQ 97
Query: 202 MLRRDEALLPMKPM-HP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
+L A M P HP RA++L T E A Q K + L S++ GG+ K
Sbjct: 98 LLM-AHASSSMSPARHPVRALILTPTRELAVQVAENVKAYAKHTPLRSTVVFGGMDMKPQ 156
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ + ++IATP +L HIE +N+S ++ +V+DEAD + D GF P++ +I+N L
Sbjct: 157 TVLLRGGVEIVIATPGRLLDHIEQKNISLSQVQMLVMDEADRMLDMGFLPDLQRIINLL 215
>gi|219872069|ref|YP_002476444.1| ATP-dependent RNA helicase SrmB [Haemophilus parasuis SH0165]
gi|219692273|gb|ACL33496.1| ATP-dependent RNA helicase SrmB [Haemophilus parasuis SH0165]
Length = 441
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 99/179 (55%), Gaps = 11/179 (6%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+++F+EL L E+++A+EK G P+ IQ IP + G+ V+ S+ +G+G+T A+LLP
Sbjct: 4 LTTFEELDLSPELLQALEKKGYKRPTAIQQETIPPAMEGRDVLGSAPTGTGKTAAFLLPA 63
Query: 200 VQML----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS 255
+Q L RR KP PR ++L T E A Q A+ ++ L + GGV+
Sbjct: 64 LQHLLDHPRR-------KPGPPRILILTPTRELAMQVAEQAEELTQFTSLKIATITGGVA 116
Query: 256 SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+ +V N +++ATP + Q+I++ N C + ++ DEAD + GFG + KI
Sbjct: 117 YQNHGEVFNTNQDLVVATPGRLQQYIQEENFDCRSVEILIFDEADRMLQMGFGQDAEKI 175
>gi|161510959|ref|YP_089142.2| ATP-dependent RNA helicase SrmB [Mannheimia succiniciproducens
MBEL55E]
Length = 445
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 97/176 (55%), Gaps = 11/176 (6%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F++ L E++KA+ + G P+ IQ IPA ++ + V+ S+ +G+G+T A+LLP +Q
Sbjct: 6 FEDFDLSPELLKALAQKGYARPTAIQSEAIPAAMDERDVLGSAPTGTGKTAAFLLPAIQH 65
Query: 203 L----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
L RR KP PR +VL T E A Q A+ ++ +L + GGV+ +
Sbjct: 66 LLDYPRR-------KPGAPRVLVLTPTRELAMQVAQQAEELAQFTKLSIATITGGVAYQN 118
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
++ N +++ATP +LQ+I++ N C + ++ DEAD + GFG + KI
Sbjct: 119 HGEIFNKNQDIVVATPGRLLQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKI 174
>gi|109899589|ref|YP_662844.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas atlantica T6c]
gi|109701870|gb|ABG41790.1| DEAD/DEAH box helicase-like protein [Pseudoalteromonas atlantica
T6c]
Length = 412
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 95/175 (54%), Gaps = 9/175 (5%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F++L L E+ +AV +G P+ IQ + IPA + GK ++ S+ +G+G+T A+LLP+ Q
Sbjct: 2 FEQLELDDELCRAVADLGYSEPTSIQQLVIPAAMEGKDILASAPTGTGKTAAFLLPVCQF 61
Query: 203 LRRDEALLPMKPMHP---RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
L L HP R ++L T E A Q ++ A +S + + GG++
Sbjct: 62 L------LDYPRRHPGSTRILILTPTRELAQQVYNQALELSRYTDIVCGVITGGINYGTD 115
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
D + +L+ATP + +HIE + C DI ++LDEAD + D GF +++I
Sbjct: 116 RDTFEKNLDILVATPGRLFEHIEQESFDCRDIECLILDEADRMLDMGFSSIVNQI 170
>gi|402084250|gb|EJT79268.1| ATP-dependent RNA helicase HAS1 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 615
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 107/186 (57%), Gaps = 5/186 (2%)
Query: 134 GSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTL 193
S+A +F ELGL +KA+++MG +EIQ GIP +L GK V+ ++ +GSG+TL
Sbjct: 127 ASDATAAQAFDELGLSENTMKAIKEMGFDKMTEIQRRGIPPLLAGKDVLGAAKTGSGKTL 186
Query: 194 AYLLPLVQMLRRDEALLPMKPMHPRAIVLCT-TEESADQGFHMAKFISHCARLDSSMENG 252
A+L+P V+MLR L KP + +++ + T E A Q F +A+ + + G
Sbjct: 187 AFLIPAVEMLRS----LKFKPRNGTGVIVVSPTRELALQIFGVARNLMQFHSQTYGICIG 242
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
G + +A + + + +LIATP +L H+++ ++R +V+DEAD + + GF E+
Sbjct: 243 GANRRAEVEKLSKGVNLLIATPGRLLDHLQNTPFVFKNLRSLVIDEADRILEIGFEDEMR 302
Query: 313 KILNPL 318
+I+ L
Sbjct: 303 QIIKIL 308
>gi|424666934|ref|ZP_18103959.1| hypothetical protein A1OC_00492 [Stenotrophomonas maltophilia
Ab55555]
gi|401069603|gb|EJP78124.1| hypothetical protein A1OC_00492 [Stenotrophomonas maltophilia
Ab55555]
Length = 470
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 101/198 (51%), Gaps = 7/198 (3%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL +++A+ + G P+ IQ IP L G+ ++ + +G+G+T A+ LPL+Q
Sbjct: 2 SFESLGLAPFLLRALAEQGYENPTPIQQQAIPLALAGRDLLAGAQTGTGKTAAFGLPLLQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L + P PRA++L T E A Q + S R+ S+ GGV D
Sbjct: 62 HLGTASQEVRSGPRKPRALILAPTRELATQVHDSLRGYSKYLRIPSACIYGGVGMGNQLD 121
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDS 321
+ + +L+A P ++ H+E R++ I +VLDEAD + D GF P I +IL L
Sbjct: 122 ILRRGVDLLVACPGRLIDHLERRSIDLSGIELLVLDEADRMLDMGFLPSIKRILAKLPK- 180
Query: 322 ALKSNGQGFQTILVTAAI 339
Q QT+L +A
Sbjct: 181 ------QNRQTLLFSATF 192
>gi|254466325|ref|ZP_05079736.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium Y4I]
gi|206687233|gb|EDZ47715.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium Y4I]
Length = 467
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 99/177 (55%), Gaps = 4/177 (2%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++ F +L L +++KA+E+ G P+ IQ IP L G+ V+ + +G+G+T ++ LP+
Sbjct: 1 MTKFTDLNLNPKVLKAIEEAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPM 60
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
+ +L R A M PR++VLC T E A Q + +L ++ GGVS K
Sbjct: 61 ITLLARGRARARM----PRSLVLCPTRELAAQVAENFDTYAKHVKLTKALLIGGVSFKEQ 116
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ + + + +LIATP +L H E + ++ +V+DEAD + D GF P+I +I +
Sbjct: 117 DALIDKGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFS 173
>gi|356558698|ref|XP_003547640.1| PREDICTED: putative DEAD-box ATP-dependent RNA helicase 29-like
[Glycine max]
Length = 778
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 111/205 (54%), Gaps = 16/205 (7%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F+ LGL + K +++ G VP+ IQ +P +L+G VV + +GSG+T A+L+P M
Sbjct: 20 FESLGLNPNVFKGIKRKGYKVPTPIQRKTMPLILSGSDVVAMARTGSGKTAAFLVP---M 76
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA-LED 261
L R +P + RA++L T + A Q K + H L S+ GG S ++ E+
Sbjct: 77 LHRLNQHIPQSGV--RALILSPTRDLALQTLKFTKELGHFTDLRVSLLVGGDSMESQFEE 134
Query: 262 VSNAPIGMLIATPSEVLQHI-EDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 320
++ +P ++IATP ++ H+ E ++S + YVV DEAD LF GF ++ +IL L
Sbjct: 135 LAQSP-DIIIATPGRLMHHLSEVDDMSLRSVEYVVFDEADCLFGMGFAEQLHQILAQL-- 191
Query: 321 SALKSNGQGFQTILVTAAIAEMLGE 345
G+ QT+L +A + L E
Sbjct: 192 ------GENRQTLLFSATLPSALAE 210
>gi|254480404|ref|ZP_05093651.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
HTCC2148]
gi|214038987|gb|EEB79647.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
HTCC2148]
Length = 429
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 96/176 (54%), Gaps = 2/176 (1%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F++LGL AE+++AVE G + IQ IP VL GK V+ + +G+G+T + LP++Q
Sbjct: 3 FKDLGLSAELLRAVETQGYDEATPIQQQAIPLVLKGKDVLAGAQTGTGKTAGFTLPVLQR 62
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDV 262
L+ A + HPR +VL T E A Q + S++ GGVS +
Sbjct: 63 LQSSHA--EGQKRHPRVLVLTPTRELAAQVHESVRDYGRFLPFRSAVIFGGVSINPQKQK 120
Query: 263 SNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +++ATP +L H++ R++ + +VLDEAD + D GF +I K+LN +
Sbjct: 121 LIKGVDVVVATPGRLLDHLQQRSIDLSKVEVLVLDEADRMLDMGFIRDIRKVLNAI 176
>gi|17232210|ref|NP_488758.1| ATP-dependent RNA helicase [Nostoc sp. PCC 7120]
gi|17133855|dbj|BAB76417.1| ATP-dependent RNA helicase [Nostoc sp. PCC 7120]
Length = 426
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 98/178 (55%), Gaps = 1/178 (0%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL E+I AV ++G P+ IQ IPAVL+G+ ++ + +G+G+T ++ LPL+
Sbjct: 2 SFSHLGLSNEIINAVTELGYTKPTPIQMQSIPAVLSGRDLLAGAQTGTGKTASFTLPLLH 61
Query: 202 MLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE 260
+L +D P RA++L T E A Q + +L+S + GGVS +
Sbjct: 62 LLSQDSLKSASNASSPIRALILTPTRELAAQVESSVRDYGKYLKLNSMVMFGGVSINPQK 121
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +L+ATP +L H++ V+ I +VLDEAD + D GF +I +IL+ L
Sbjct: 122 QRLKGRVDILVATPGRLLDHVQQGTVNLSQIEILVLDEADRMLDMGFIRDIRRILSLL 179
>gi|328869268|gb|EGG17646.1| putative RNA helicase [Dictyostelium fasciculatum]
Length = 860
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 111/203 (54%), Gaps = 17/203 (8%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F+EL L + KAV K+G P+ IQ IP +LNGK ++ S+ +GSG+T A++LP++
Sbjct: 235 TFEELHLSRPLQKAVAKLGYTQPTPIQAKAIPLILNGKDILASATTGSGKTAAFILPIL- 293
Query: 202 MLRRDEALLPMKPMH--PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
E LL H R +++ T E A Q + + ++ + S + GG+S+K
Sbjct: 294 -----ERLLYRDATHRVSRVLIVLPTRELALQCHSVFESLAQFTNVQSCLVVGGLSNKVQ 348
Query: 260 EDVSNAPIGMLIATPSEVLQHIED-RNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
E ++IATP ++ H+ + +V +DI +VLDEAD L D GF E+++++
Sbjct: 349 EHELRKRPDVIIATPGRLIDHLLNAHDVGLEDIEILVLDEADRLLDMGFKDELNRVVESC 408
Query: 319 KDSALKSNGQGFQTILVTAAIAE 341
D G QT+L +A +++
Sbjct: 409 PD--------GRQTLLFSATLSD 423
>gi|449449653|ref|XP_004142579.1| PREDICTED: putative DEAD-box ATP-dependent RNA helicase 29-like
[Cucumis sativus]
Length = 789
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 115/205 (56%), Gaps = 16/205 (7%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F+ LGL A + + +++ G VP+ IQ +P +L+G VV + +GSG+T A+L+P+++
Sbjct: 31 FESLGLSANVFRGIKRKGYRVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLER 90
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA-LED 261
L++ E P + RA++L T + A Q K + L S+ GG S + E+
Sbjct: 91 LKQHE---PQGGV--RALILSPTRDLALQTLKFTKELGKFTDLRISLLVGGDSMETQFEE 145
Query: 262 VSNAPIGMLIATPSEVLQHI-EDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 320
++ +P ++IATP ++ H+ E +++ + YVV DEAD LFD GF ++ KIL L +
Sbjct: 146 LAQSP-DVIIATPGRLMHHLAEVDDMTLRTVEYVVFDEADCLFDMGFAEQLHKILAQLSE 204
Query: 321 SALKSNGQGFQTILVTAAIAEMLGE 345
+ QT+L +A + +L E
Sbjct: 205 NR--------QTLLFSATLPSVLAE 221
>gi|343508547|ref|ZP_08745883.1| ATP-dependent RNA helicase SrmB [Vibrio ichthyoenteri ATCC 700023]
gi|342793255|gb|EGU29059.1| ATP-dependent RNA helicase SrmB [Vibrio ichthyoenteri ATCC 700023]
Length = 412
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 98/176 (55%), Gaps = 3/176 (1%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F +L L ++ A+E+MG P+++Q IP L G+ ++ S+ +G+G+T A+++P
Sbjct: 1 MIKNFADLDLDPNLLTAIEEMGFERPTQVQAQTIPQALEGRDILASAPTGTGKTAAFVIP 60
Query: 199 LVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
+Q L + KP R ++L T E A Q A+ ++ +L+ GGV +
Sbjct: 61 ALQYL---QDFPRRKPGPARMLILTPTRELAMQIADQARALAKNTKLNIFTITGGVQYQE 117
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
D+ +++ATP ++++I+ C I +++LDEAD + D GFGP + K+
Sbjct: 118 HADILATTQDIVVATPGRLMEYIKAERFDCRAIEWLILDEADRMLDMGFGPTVDKL 173
>gi|456737831|gb|EMF62508.1| ATP-dependent RNA helicase RhlE [Stenotrophomonas maltophilia EPM1]
Length = 470
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 101/196 (51%), Gaps = 7/196 (3%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL +++A+ + G P+ IQ IP L G+ ++ + +G+G+T A+ LPL+Q
Sbjct: 2 SFESLGLAPFLLRALAEQGYENPTPIQQQAIPLALAGRDLLAGAQTGTGKTAAFGLPLLQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L + P PRA++L T E A Q + S R+ S+ GGV D
Sbjct: 62 HLGTASQEVRSGPRKPRALILAPTRELATQVHDSLRGYSKYLRIPSACIYGGVGMGNQLD 121
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDS 321
+ + +L+A P ++ H+E R++ I +VLDEAD + D GF P I +IL L
Sbjct: 122 ILRRGVDLLVACPGRLIDHLERRSIDLSGIELLVLDEADRMLDMGFLPSIKRILAKLPK- 180
Query: 322 ALKSNGQGFQTILVTA 337
Q QT+L +A
Sbjct: 181 ------QNRQTLLFSA 190
>gi|449511783|ref|XP_004164052.1| PREDICTED: putative DEAD-box ATP-dependent RNA helicase 29-like
[Cucumis sativus]
Length = 789
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 115/205 (56%), Gaps = 16/205 (7%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F+ LGL A + + +++ G VP+ IQ +P +L+G VV + +GSG+T A+L+P+++
Sbjct: 31 FESLGLSANVFRGIKRKGYRVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLER 90
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA-LED 261
L++ E P + RA++L T + A Q K + L S+ GG S + E+
Sbjct: 91 LKQHE---PQGGV--RALILSPTRDLALQTLKFTKELGKFTDLRISLLVGGDSMETQFEE 145
Query: 262 VSNAPIGMLIATPSEVLQHI-EDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 320
++ +P ++IATP ++ H+ E +++ + YVV DEAD LFD GF ++ KIL L +
Sbjct: 146 LAQSP-DVIIATPGRLMHHLAEVDDMTLRTVEYVVFDEADCLFDMGFAEQLHKILAQLSE 204
Query: 321 SALKSNGQGFQTILVTAAIAEMLGE 345
+ QT+L +A + +L E
Sbjct: 205 NR--------QTLLFSATLPSVLAE 221
>gi|262163925|ref|ZP_06031664.1| ATP-dependent RNA helicase SrmB [Vibrio mimicus VM223]
gi|262027453|gb|EEY46119.1| ATP-dependent RNA helicase SrmB [Vibrio mimicus VM223]
Length = 416
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 99/177 (55%), Gaps = 5/177 (2%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F +L L +++A+E+MG P+++Q IP L+G+ V+ S+ +G+G+T A+ +P
Sbjct: 1 MIKTFADLELDPVLLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFAIP 60
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
+Q L P + P R ++L T E A Q A+ ++ RL+ GGV +
Sbjct: 61 ALQYLLD----FPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQ 116
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
D+ +++ATP +L++I+ C I +++LDEAD + D GFGP + ++
Sbjct: 117 EHADILATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRL 173
>gi|190572660|ref|YP_001970505.1| ATP-dependent RNA helicase 1 [Stenotrophomonas maltophilia K279a]
gi|190010582|emb|CAQ44191.1| putative ATP-dependent RNA helicase 1 [Stenotrophomonas maltophilia
K279a]
Length = 470
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 101/198 (51%), Gaps = 7/198 (3%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL +++A+ + G P+ IQ IP L G+ ++ + +G+G+T A+ LPL+Q
Sbjct: 2 SFESLGLAPFLLRALAEQGYENPTPIQQQAIPLALAGRDLLAGAQTGTGKTAAFGLPLLQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L + P PRA++L T E A Q + S R+ S+ GGV D
Sbjct: 62 HLGTASQEVRSGPRKPRALILAPTRELATQVHDSLRGYSKYLRIPSACIYGGVGMGNQLD 121
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDS 321
+ + +L+A P ++ H+E R++ I +VLDEAD + D GF P I +IL L
Sbjct: 122 ILRRGVDLLVACPGRLIDHLERRSIDLSGIELLVLDEADRMLDMGFLPSIKRILAKLPK- 180
Query: 322 ALKSNGQGFQTILVTAAI 339
Q QT+L +A
Sbjct: 181 ------QNRQTLLFSATF 192
>gi|258620330|ref|ZP_05715368.1| Superfamily II DNA and RNA helicase [Vibrio mimicus VM573]
gi|258624701|ref|ZP_05719635.1| Superfamily II DNA and RNA helicase [Vibrio mimicus VM603]
gi|424809634|ref|ZP_18235011.1| ATP-dependent RNA helicase SrmB [Vibrio mimicus SX-4]
gi|258582988|gb|EEW07803.1| Superfamily II DNA and RNA helicase [Vibrio mimicus VM603]
gi|258587209|gb|EEW11920.1| Superfamily II DNA and RNA helicase [Vibrio mimicus VM573]
gi|342323122|gb|EGU18908.1| ATP-dependent RNA helicase SrmB [Vibrio mimicus SX-4]
Length = 416
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 99/177 (55%), Gaps = 5/177 (2%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F +L L +++A+E+MG P+++Q IP L+G+ V+ S+ +G+G+T A+ +P
Sbjct: 1 MIKTFADLELDPVLLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFAIP 60
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
+Q L P + P R ++L T E A Q A+ ++ RL+ GGV +
Sbjct: 61 ALQYLLD----FPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQ 116
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
D+ +++ATP +L++I+ C I +++LDEAD + D GFGP + ++
Sbjct: 117 EHADILATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRL 173
>gi|163803377|ref|ZP_02197253.1| ATP-dependent RNA helicase SrmB [Vibrio sp. AND4]
gi|159172839|gb|EDP57681.1| ATP-dependent RNA helicase SrmB [Vibrio sp. AND4]
Length = 407
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 98/178 (55%), Gaps = 3/178 (1%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F EL L +++A+E+MG P+ +Q IP L+G+ ++ S+ +G+G+T A++LP
Sbjct: 1 MIRTFAELDLDQNLLEAIEQMGYERPTNVQAEAIPQALDGRDILASAPTGTGKTAAFVLP 60
Query: 199 LVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
+Q L + KP R ++L T E A Q A+ ++ +L+ GGV +
Sbjct: 61 ALQYL---QDFPRRKPGPARILILTPTRELAMQVADQARAMAKNTKLNIFTITGGVQYQE 117
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
D+ +++ATP + ++I+ C I +++LDEAD + D GF P + ++ N
Sbjct: 118 HADILATTQDIVVATPGRLREYIDAERFDCRAIEWLILDEADRMLDMGFAPTVDRLSN 175
>gi|262172263|ref|ZP_06039941.1| ATP-dependent RNA helicase SrmB [Vibrio mimicus MB-451]
gi|261893339|gb|EEY39325.1| ATP-dependent RNA helicase SrmB [Vibrio mimicus MB-451]
Length = 416
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 99/177 (55%), Gaps = 5/177 (2%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F +L L +++A+E+MG P+++Q IP L+G+ V+ S+ +G+G+T A+ +P
Sbjct: 1 MIKTFADLELDPVLLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFAIP 60
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
+Q L P + P R ++L T E A Q A+ ++ RL+ GGV +
Sbjct: 61 ALQYLLD----FPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQ 116
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
D+ +++ATP +L++I+ C I +++LDEAD + D GFGP + ++
Sbjct: 117 EHADILATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRL 173
>gi|52308057|gb|AAU38557.1| SrmB protein [Mannheimia succiniciproducens MBEL55E]
Length = 462
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 97/176 (55%), Gaps = 11/176 (6%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F++ L E++KA+ + G P+ IQ IPA ++ + V+ S+ +G+G+T A+LLP +Q
Sbjct: 23 FEDFDLSPELLKALAQKGYARPTAIQSEAIPAAMDERDVLGSAPTGTGKTAAFLLPAIQH 82
Query: 203 L----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
L RR KP PR +VL T E A Q A+ ++ +L + GGV+ +
Sbjct: 83 LLDYPRR-------KPGAPRVLVLTPTRELAMQVAQQAEELAQFTKLSIATITGGVAYQN 135
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
++ N +++ATP +LQ+I++ N C + ++ DEAD + GFG + KI
Sbjct: 136 HGEIFNKNQDIVVATPGRLLQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKI 191
>gi|90414183|ref|ZP_01222164.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
gi|90324733|gb|EAS41271.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
Length = 462
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 120/231 (51%), Gaps = 20/231 (8%)
Query: 125 IASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLS 184
+ SE E+ S ++ F++LGL ++K + +G +EIQ +P + GK V+ S
Sbjct: 3 VNSESERFYRS---IILHFKDLGLDPRLLKKLTHLGFDRATEIQRTAVPVAIMGKDVLAS 59
Query: 185 SGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 244
S +GSG+TLA+LLP +Q + R + P R ++L T E A Q F + ++
Sbjct: 60 SKTGSGKTLAFLLPAMQRMYRGK---PFTRRDQRVLILTPTRELAKQVFAQLRTLNAGTP 116
Query: 245 LDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 303
D ++ GG + + +++ P+ ++ATP H+E R+ S D + ++LDEAD +
Sbjct: 117 YDGALIVGGENFNDQVKEFRKDPM-FVVATPGRFADHLEHRSTSLDGLEMLILDEADRML 175
Query: 304 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAA-----IAEMLGEQLSS 349
D GF P++ +I +N + QT++ +A + EM E L++
Sbjct: 176 DLGFAPQLRRIHEL-------ANHRRRQTLMFSATMDNEDVIEMASEMLNA 219
>gi|157820683|ref|NP_001101516.1| probable ATP-dependent RNA helicase DDX41 [Rattus norvegicus]
gi|149039854|gb|EDL93970.1| rCG24134 [Rattus norvegicus]
gi|187469705|gb|AAI66825.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 [Rattus norvegicus]
Length = 622
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 111/207 (53%), Gaps = 15/207 (7%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ L A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 180 IKSFKEMKLPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239
Query: 200 VQMLRRDEALLPM-KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSS------MENG 252
+ E LP K P +++C + E A Q + ++ + DSS + G
Sbjct: 240 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 299
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
G+S K + + M++ATP ++ ++ + VS D RY+ LDEAD + D GF +I
Sbjct: 300 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 359
Query: 313 KILNPLKDSALKSNGQGFQTILVTAAI 339
I + K GQ QT+L +A +
Sbjct: 360 TIFSYFK-------GQ-RQTLLFSATM 378
>gi|261855960|ref|YP_003263243.1| DEAD/DEAH box helicase [Halothiobacillus neapolitanus c2]
gi|261836429|gb|ACX96196.1| DEAD/DEAH box helicase domain protein [Halothiobacillus
neapolitanus c2]
Length = 469
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 93/174 (53%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF ELGL E++ A++ +G P+ IQ IP VL+G+ ++ ++ +G+G+T + LPL+Q
Sbjct: 2 SFAELGLMPELLTALDAVGYTSPTPIQREAIPIVLSGRDLLAAAQTGTGKTAGFTLPLLQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L L P RA+VL T E A Q K +L S + GGV+ D
Sbjct: 62 RLATTPVLHPAPKHRIRALVLTPTRELASQVEESVKQYGQKLKLTSMVIFGGVNINPQRD 121
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
+ +L+ATP +L H+ NV + +VLDEAD + D GF +I ++L
Sbjct: 122 RLQRKLDILVATPGRLLDHVGQGNVDLGGVEILVLDEADRMLDMGFIRDIKRVL 175
>gi|348685911|gb|EGZ25726.1| hypothetical protein PHYSODRAFT_486355 [Phytophthora sojae]
Length = 852
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 114/217 (52%), Gaps = 21/217 (9%)
Query: 131 KSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSG 190
KSSG A V FQ LGL + + V MG VP+ IQ +P VL+GK V + +GSG
Sbjct: 27 KSSGKGAGV-GGFQHLGLSPPVFRGVMAMGYKVPTPIQRKSLPIVLSGKDCVAMARTGSG 85
Query: 191 RTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSME 250
+T A+L+P+++ L+ + + RA+VL T E A Q AK +S L ++
Sbjct: 86 KTAAFLIPMLEKLKEHSTKIGV-----RAVVLSPTRELAVQTLRFAKQLSKFTSLKMALI 140
Query: 251 NGGVS-SKALEDVSNAPIGMLIATPSEVLQHIE---DRNVSCDDIRYVVLDEADTLFDRG 306
GG + E ++ P +L+ATP ++ H++ D N+ + YVV DEAD +F+ G
Sbjct: 141 VGGEGMDQQFEAIAANP-DVLVATPGRLMHHLQEIPDFNLKA--VEYVVFDEADRIFEMG 197
Query: 307 FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEML 343
F ++ +IL + S QT+L +A + + L
Sbjct: 198 FAEQLQEILKNMPTSR--------QTLLFSATLPKAL 226
>gi|417845119|ref|ZP_12491151.1| putative dEAD-like helicase [Haemophilus haemolyticus M21639]
gi|341955828|gb|EGT82277.1| putative dEAD-like helicase [Haemophilus haemolyticus M21639]
Length = 247
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 94/172 (54%), Gaps = 3/172 (1%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F++ L E++KA+EK G P+ IQ IPA + V+ S+ +G+G+T A+LLP +Q
Sbjct: 6 FEQFDLSPELLKALEKKGYSRPTAIQMESIPAAMEECDVLGSAPTGTGKTAAFLLPALQH 65
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDV 262
L KP PR +VL T E A Q A+ ++ L+ + GGV+ + DV
Sbjct: 66 LLDYPC---RKPGPPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDV 122
Query: 263 SNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
N +++ATP +LQ+I++ N C + ++ DEAD + GFG + KI
Sbjct: 123 FNTNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKI 174
>gi|156973271|ref|YP_001444178.1| ATP-dependent RNA helicase SrmB [Vibrio harveyi ATCC BAA-1116]
gi|388600479|ref|ZP_10158875.1| ATP-dependent RNA helicase SrmB [Vibrio campbellii DS40M4]
gi|424032046|ref|ZP_17771467.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae HENC-01]
gi|444427731|ref|ZP_21223102.1| ATP-dependent RNA helicase SrmB [Vibrio campbellii CAIM 519 = NBRC
15631]
gi|156524865|gb|ABU69951.1| hypothetical protein VIBHAR_00952 [Vibrio harveyi ATCC BAA-1116]
gi|408876458|gb|EKM15575.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae HENC-01]
gi|444239029|gb|ELU50609.1| ATP-dependent RNA helicase SrmB [Vibrio campbellii CAIM 519 = NBRC
15631]
Length = 407
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 99/178 (55%), Gaps = 3/178 (1%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F EL L +++A+++MG P++IQ IP L+G+ ++ S+ +G+G+T A++LP
Sbjct: 1 MIRTFAELDLDQNLLEAIDEMGYERPTKIQAEAIPQALDGRDILASAPTGTGKTAAFVLP 60
Query: 199 LVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
+Q L + KP R ++L T E A Q A+ ++ +L+ GGV +
Sbjct: 61 ALQYL---QDFPRRKPGPARILILTPTRELAMQVADQARALAKNTKLNIFTITGGVQYQE 117
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
D+ +++ATP + ++I+ C I +++LDEAD + D GF P + ++ N
Sbjct: 118 HADILATTQDIVVATPGRLREYIDAERFDCRAIEWLILDEADRMLDMGFAPTVDRLSN 175
>gi|126729580|ref|ZP_01745393.1| ATP-dependent RNA helicase RhlE [Sagittula stellata E-37]
gi|126709699|gb|EBA08752.1| ATP-dependent RNA helicase RhlE [Sagittula stellata E-37]
Length = 469
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 97/177 (54%), Gaps = 4/177 (2%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++ F +L L +++KA+E+ G P+ IQ IP L GK V+ + +G+G+T ++ LP+
Sbjct: 1 MTKFSDLDLSPKVLKAIEEAGYTTPTPIQAGAIPHALEGKDVLGIAQTGTGKTASFTLPM 60
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
+ L R A M PR++VLC T E A Q S +L ++ GGVS K
Sbjct: 61 IHKLARGRARARM----PRSLVLCPTRELAAQVAENFDTYSKHVKLTKALLIGGVSFKEQ 116
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ + + + +LIATP +L H E + I +V+DEAD + D GF P+I +I +
Sbjct: 117 DVLIDKGVDVLIATPGRLLDHFERGKLLLTGIEIMVVDEADRMLDMGFIPDIERIFS 173
>gi|365538739|ref|ZP_09363914.1| ATP-dependent RNA helicase [Vibrio ordalii ATCC 33509]
Length = 421
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 106/224 (47%), Gaps = 12/224 (5%)
Query: 137 AEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYL 196
++ V FQ LGL ++ A++ +G P+++Q IP VL GK V+ + +G+G+T A+
Sbjct: 2 SDTVHPFQRLGLSTTLVSALQSLGFEQPTDVQSQAIPHVLAGKDVMAGAQTGTGKTAAFG 61
Query: 197 LPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSS 256
LP++Q ++ RA+VL T E A Q F + L GG S
Sbjct: 62 LPILQRFLDNQVEREANSKVVRALVLVPTRELAQQVFDSLSAYAQSTTLKIVTAYGGTSM 121
Query: 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ +LIATP ++ H+ RN+ +VLDEAD + D GF P+I +IL
Sbjct: 122 QVQTRNLRGGTDILIATPGRLIDHLFVRNIILTQTEVLVLDEADRMLDMGFLPDIQRILQ 181
Query: 317 PLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAG 360
+ D QT+ +A +++ +L + RD G
Sbjct: 182 RMNDER--------QTLFFSAT----FDDKIKALAHKMMRDPVG 213
>gi|410914046|ref|XP_003970499.1| PREDICTED: probable ATP-dependent RNA helicase DDX41-like [Takifugu
rubripes]
Length = 614
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 114/209 (54%), Gaps = 19/209 (9%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ L ++K ++K G+ P+ IQ G+P VL+G+ ++ + +GSG+TL ++LP+
Sbjct: 172 IKSFREMKLPPAILKGLKKKGIVHPTPIQIQGMPTVLSGRDMIGIAFTGSGKTLVFILPI 231
Query: 200 VQMLRRDEALLPM-KPMHPRAIVLCTTEESADQGFHMAKFISHCA--------RLDSSME 250
+ E LP K P +++C + E A Q + ++ +C +L +++
Sbjct: 232 IMFCLEQEKRLPFCKREGPYGLIICPSRELARQTHGIIEY--YCKLLEEEGAPQLRTALC 289
Query: 251 NGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPE 310
GG+S K +V + M++ATP ++ ++ + VS D RY+ LDEAD + D GF +
Sbjct: 290 IGGMSVKEQMEVIKHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEED 349
Query: 311 ISKILNPLKDSALKSNGQGFQTILVTAAI 339
I I + K GQ QT+L +A +
Sbjct: 350 IRTIFSYFK-------GQR-QTLLYSATM 370
>gi|153826515|ref|ZP_01979182.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MZO-2]
gi|149739695|gb|EDM53902.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MZO-2]
Length = 423
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 99/177 (55%), Gaps = 5/177 (2%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F L L +++A+E+MG P+++Q IP L+G+ V+ S+ +G+G+T A+++P
Sbjct: 1 MIKTFANLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIP 60
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
+Q L P + P R ++L T E A Q A+ ++ RL+ GGV +
Sbjct: 61 ALQYLLD----FPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQ 116
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
D+ +++ATP +L++I+ C I +++LDEAD + D GFGP + ++
Sbjct: 117 EHADILATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRL 173
>gi|145300478|ref|YP_001143319.1| DEAD-box ATP dependent DNA helicase [Aeromonas salmonicida subsp.
salmonicida A449]
gi|418362912|ref|ZP_12963530.1| DEAD-box ATP dependent DNA helicase [Aeromonas salmonicida subsp.
salmonicida 01-B526]
gi|142853250|gb|ABO91571.1| ATP-dependent RNA helicase, DEAD box family [Aeromonas salmonicida
subsp. salmonicida A449]
gi|356685918|gb|EHI50537.1| DEAD-box ATP dependent DNA helicase [Aeromonas salmonicida subsp.
salmonicida 01-B526]
Length = 417
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 97/177 (54%), Gaps = 2/177 (1%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++SF EL L + + + ++G P+ IQ IP +L G+ ++ + +G+G+T A++LPL
Sbjct: 3 IASFAELALSPRLQQTLSELGYAAPTPIQARAIPVILTGRDLMAGAQTGTGKTAAFVLPL 62
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
++ L + A +P+ RA+VL T E A Q F L S++ GGVS A
Sbjct: 63 LEQLMQHPASDTARPI--RALVLVPTRELAVQVFDSVVRYGQGTGLTSALVYGGVSIAAQ 120
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ A + +LIATP +L H+ +S + + ++V DEAD + D GF EI +L
Sbjct: 121 VEALQAGVDLLIATPGRLLDHLRQGALSLEHLSHLVFDEADRMLDMGFMDEIKALLK 177
>gi|332305447|ref|YP_004433298.1| DEAD/DEAH box helicase domain protein [Glaciecola sp. 4H-3-7+YE-5]
gi|332172776|gb|AEE22030.1| DEAD/DEAH box helicase domain protein [Glaciecola sp. 4H-3-7+YE-5]
Length = 412
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 119/239 (49%), Gaps = 19/239 (7%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F++L L E+ +AV +G P+ IQ + IPA + GK ++ S+ +G+G+T A+LLP+ Q
Sbjct: 2 FEQLELDDELCRAVADLGYSEPTSIQQLVIPAAMEGKDILASAPTGTGKTAAFLLPVCQF 61
Query: 203 LRRDEALLPMKPMHP---RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
L L HP R ++L T E A Q ++ A +S + + GG++
Sbjct: 62 L------LDYPRRHPGSTRILILTPTRELAQQVYNQALELSRYTDIVCGVITGGINYGTD 115
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319
++ + +L+ATP + +HIE + C DI ++LDEAD + D GF S I+N +
Sbjct: 116 KETLEKNLDILVATPGRLFEHIEQESFDCRDIECLILDEADRMLDMGF----SSIVNQIS 171
Query: 320 DSA-LKSNGQGFQTILVTAAIAEMLGEQLSSLMECLE----RDNAGKVTAMLLEMDQAE 373
A + F L A I+ + L+ +E LE R GK+ L D A+
Sbjct: 172 AEARWRKQSMLFSATLEGAGISRFAKDILNDPVE-LEAASSRKEQGKIHQWLHLADDAK 229
>gi|422349727|ref|ZP_16430616.1| hypothetical protein HMPREF9465_01506 [Sutterella wadsworthensis
2_1_59BFAA]
gi|404657936|gb|EKB30816.1| hypothetical protein HMPREF9465_01506 [Sutterella wadsworthensis
2_1_59BFAA]
Length = 483
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 104/183 (56%), Gaps = 7/183 (3%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+SSF + L + ++ A+E++G P+ IQ IP V+ G V+ ++ +G+G+T ++ LPL
Sbjct: 1 MSSFAQFNLDSRIMSAIERIGYKEPTPIQLQAIPVVMKGGDVMGAAQTGTGKTASFGLPL 60
Query: 200 VQML--RRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVS 255
+ + + ++ P + HP RA++L T E ADQ +M ++ + L + GGV
Sbjct: 61 IARILPHANTSMSPAR--HPVRALILTPTRELADQVSANMTQYAADTP-LRVGVVYGGVD 117
Query: 256 SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
+ D+ + +L ATP +L HIE R + + VVLDEAD + D GF P+IS+IL
Sbjct: 118 IRPQSDMLRRGVEILTATPGRLLDHIEQRATNLSQVEVVVLDEADRMLDMGFLPDISRIL 177
Query: 316 NPL 318
L
Sbjct: 178 KLL 180
>gi|153874150|ref|ZP_02002476.1| ATP-dependent RNA helicase RhlE [Beggiatoa sp. PS]
gi|152069386|gb|EDN67524.1| ATP-dependent RNA helicase RhlE [Beggiatoa sp. PS]
Length = 441
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 94/173 (54%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+E L ++KA+++ G P+ +Q IP VLNG ++ S+ +G+G+T A++LP +Q
Sbjct: 2 SFEEFNLHPIILKAIQQCGYTTPTGVQAEAIPKVLNGSDLIASANTGTGKTAAFVLPALQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L E + + P +VL T E A+Q + R S+ GG+ +
Sbjct: 62 RLTNKEHRVKKQNGKPSVLVLTPTRELANQISQAIRNYGKNLRFFSTNLVGGMPYEPQLR 121
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+ PI +++ATP +L +E RN+ + +VLDEAD + D GF E++KI
Sbjct: 122 ALSRPIDIVVATPGRLLDLVERRNIDLSGVNMLVLDEADRMLDMGFVDEVNKI 174
>gi|284006731|emb|CBA71988.1| ATP-dependent RNA helicase [Arsenophonus nasoniae]
Length = 449
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 109/215 (50%), Gaps = 16/215 (7%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
++F EL L ++ A++ G P+ IQ IPA + G+ ++ SS +G+G+T AYLLP++
Sbjct: 11 TTFSELELDQSLLNALDDKGYERPTAIQLATIPAAMEGRDILGSSPTGTGKTAAYLLPVI 70
Query: 201 QMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
Q L P K P R ++L T E A Q AK ++ LD + GGVS
Sbjct: 71 QHL----LDFPRKRSGPPRILILTPTRELAMQVAEQAKALAKYTHLDIATITGGVSYVNH 126
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319
++ + +++AT +LQ+I++ N C I ++LDEAD + D GF +I I +
Sbjct: 127 AEIFSENQDIVVATTGRLLQYIKEENFDCRAIETLILDEADRMLDMGFANDIETIAGETR 186
Query: 320 DSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECL 354
QT+L +A +A GE + E L
Sbjct: 187 WRK--------QTMLFSATLA---GEAIHDFAERL 210
>gi|83953889|ref|ZP_00962610.1| ATP-dependent RNA helicase RhlE [Sulfitobacter sp. NAS-14.1]
gi|83841834|gb|EAP81003.1| ATP-dependent RNA helicase RhlE [Sulfitobacter sp. NAS-14.1]
Length = 554
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 99/177 (55%), Gaps = 6/177 (3%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++ F +L L +++KA+ + G P+ IQ IP L GK V+ + +G+G+T ++ LP+
Sbjct: 21 MTKFSDLNLNPKVLKAINEAGYETPTPIQAGAIPPALEGKDVLGIAQTGTGKTASFTLPM 80
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSSKA 258
+ +L R A M PR++VLC T E A Q + + H +L ++ GGVS
Sbjct: 81 ITLLARGRARARM----PRSLVLCPTRELAAQVAENFDTYTKHL-KLTKALLIGGVSFGE 135
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
+ + + + +LIATP ++ H E + D++ +V+DEAD + D GF P+I +I
Sbjct: 136 QDKLIDKGVDVLIATPGRLIDHFERGKLILSDVKIMVVDEADRMLDMGFIPDIERIF 192
>gi|424036922|ref|ZP_17775835.1| type III restriction enzyme, res subunit, partial [Vibrio cholerae
HENC-02]
gi|408896112|gb|EKM32294.1| type III restriction enzyme, res subunit, partial [Vibrio cholerae
HENC-02]
Length = 341
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 99/178 (55%), Gaps = 3/178 (1%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F EL L +++A+++MG P++IQ IP L+G+ ++ S+ +G+G+T A++LP
Sbjct: 1 MIRTFAELDLDQNLLEAIDEMGYERPTKIQAEAIPQALDGRDILASAPTGTGKTAAFVLP 60
Query: 199 LVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
+Q L + KP R ++L T E A Q A+ ++ +L+ GGV +
Sbjct: 61 ALQYL---QDFPRRKPGPARILILTPTRELAMQVADQARALAKNTKLNIFTITGGVQYQE 117
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
D+ +++ATP + ++I+ C I +++LDEAD + D GF P + ++ N
Sbjct: 118 HADILATTQDIVVATPGRLREYIDAERFDCRAIEWLILDEADRMLDMGFAPTVDRLSN 175
>gi|86137575|ref|ZP_01056152.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. MED193]
gi|85825910|gb|EAQ46108.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. MED193]
Length = 527
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 101/178 (56%), Gaps = 6/178 (3%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++ F +L L A+++KA+ + G P+ IQ IP L G+ V+ + +G+G+T ++ LP+
Sbjct: 1 MTKFTDLNLNAKVLKAIAEAGYESPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPM 60
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSSKA 258
+ +L R A M PR++VLC T E A Q + + H +L ++ GGVS K
Sbjct: 61 ITLLARGRARARM----PRSLVLCPTRELAAQVAENFDTYTKHL-KLTKALLIGGVSFKE 115
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ + + + +LIATP +L H E + ++ +V+DEAD + D GF P+I +I +
Sbjct: 116 QDQLIDKGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFS 173
>gi|261212229|ref|ZP_05926515.1| ATP-dependent RNA helicase SrmB [Vibrio sp. RC341]
gi|260838837|gb|EEX65488.1| ATP-dependent RNA helicase SrmB [Vibrio sp. RC341]
Length = 421
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 99/177 (55%), Gaps = 5/177 (2%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F +L L +++A+E+MG P+++Q IP L+G+ V+ S+ +G+G+T A+ +P
Sbjct: 1 MIKTFADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFAIP 60
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
+Q L P + P R ++L T E A Q A+ ++ RL+ GGV +
Sbjct: 61 ALQYLLD----FPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQ 116
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
D+ +++ATP +L++I+ C I +++LDEAD + D GFGP + ++
Sbjct: 117 EHADILATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRL 173
>gi|153006338|ref|YP_001380663.1| DEAD/DEAH box helicase [Anaeromyxobacter sp. Fw109-5]
gi|152029911|gb|ABS27679.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter sp.
Fw109-5]
Length = 455
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 103/201 (51%), Gaps = 18/201 (8%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
+SF EL L E + A+ + G P+ IQ IP L GK V+ ++ +G+G+T A+LLPL+
Sbjct: 4 TSFAELHLSPEALAALRRAGFEHPTPIQAQAIPPALAGKDVIGTAATGTGKTAAFLLPLI 63
Query: 201 QMLRRDEALLPMKPMHPRAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSSKAL 259
L KP RA+VL T E A Q G + +F H R+ ++ GGV
Sbjct: 64 DRL-------AGKPG-TRALVLAPTRELALQIGEELERF-GHARRVRGAVIIGGVGMAQQ 114
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319
+ ++IATP ++ H+E N D I +VLDEAD + D GF P++ +IL L
Sbjct: 115 AEALRQKREIVIATPGRLVDHLEQGNARLDGIEALVLDEADRMLDMGFKPQLDRILRRLP 174
Query: 320 DSALKSNGQGFQTILVTAAIA 340
QT+L +A +A
Sbjct: 175 KQR--------QTLLFSATMA 187
>gi|393777345|ref|ZP_10365637.1| ATP-dependent RNA helicase hydrolase [Ralstonia sp. PBA]
gi|392715686|gb|EIZ03268.1| ATP-dependent RNA helicase hydrolase [Ralstonia sp. PBA]
Length = 516
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 92/174 (52%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF ELGL ++++AV ++G VP+ IQ IPAVL G ++ + +G+G+T + LPL+Q
Sbjct: 2 SFSELGLSDKLVRAVTELGYTVPTPIQRQAIPAVLGGGDLLAGAQTGTGKTAGFTLPLLQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L A PRA+VL T E A Q + L S + GGV D
Sbjct: 62 RLSGTAAAQAGNRRLPRALVLTPTRELAAQVEESVRDYGKYLPLRSMVMFGGVGINPQVD 121
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
+ + +++ATP +L H R + +I +VLDEAD + D GF +I K+L
Sbjct: 122 LLRKGVDIVVATPGRLLDHAGQRTIDLSNIEILVLDEADRMLDMGFIHDIRKVL 175
>gi|380029382|ref|XP_003698353.1| PREDICTED: ATP-dependent RNA helicase DDX54-like [Apis florea]
Length = 772
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 116/226 (51%), Gaps = 20/226 (8%)
Query: 118 EQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLN 177
E+ +++NI + K SG FQ + L ++K + K G +P+ IQ IP L
Sbjct: 20 EENEINNIKKKVYKKSGG-------FQSMALSFPILKGILKRGYKIPTPIQRKTIPLALE 72
Query: 178 GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK 237
G+ +V + +GSG+T +L+PL + L+ +A RA++L T E A Q K
Sbjct: 73 GRDIVAMARTGSGKTACFLIPLFEKLKTRQA-----KAGARALILSPTRELALQTLKFIK 127
Query: 238 FISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLD 297
+ L +++ GG + + + +LIATP L + ++ ++I YVV D
Sbjct: 128 ELGRFTGLKATLILGGDNMENQFSAIHGNPDILIATPGRFLHICVEMDLQLNNIEYVVFD 187
Query: 298 EADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEML 343
EAD LF+ GFG +I++I+N L +S QT+L +A + ++L
Sbjct: 188 EADRLFEMGFGEQINEIINRLPESR--------QTLLFSATLPKLL 225
>gi|330828434|ref|YP_004391386.1| DEAD box family ATP-dependent RNA helicase [Aeromonas veronii B565]
gi|423210879|ref|ZP_17197432.1| hypothetical protein HMPREF1169_02950 [Aeromonas veronii AER397]
gi|328803570|gb|AEB48769.1| ATP-dependent RNA helicase, DEAD box family [Aeromonas veronii
B565]
gi|404614274|gb|EKB11275.1| hypothetical protein HMPREF1169_02950 [Aeromonas veronii AER397]
Length = 416
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 95/178 (53%), Gaps = 2/178 (1%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
+SF EL L + + + ++G P+ IQ IP +L G+ ++ + +G+G+T A++LPL+
Sbjct: 4 ASFAELALSPRLQQTLTELGYAAPTPIQARAIPVILAGRDLMAGAQTGTGKTAAFVLPLL 63
Query: 201 QMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE 260
+ L + +P+ RA+VL T E A Q L S+ GGVS A
Sbjct: 64 EQLLAQPQMESQRPI--RALVLVPTRELAVQVAESVARYGQGTGLTSTQVYGGVSIAAQV 121
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
D + +LIATP +L H+ +S D +R++V DEAD + D GF EI+ +L L
Sbjct: 122 DALKNGVDLLIATPGRLLDHLRQGALSLDSLRHLVFDEADRMLDMGFMDEITALLKQL 179
>gi|73540223|ref|YP_294743.1| helicase [Ralstonia eutropha JMP134]
gi|72117636|gb|AAZ59899.1| Helicase, C-terminal:Type III restriction enzyme, res
subunit:DEAD/DEAH box helicase, N-terminal [Ralstonia
eutropha JMP134]
Length = 506
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 93/177 (52%), Gaps = 1/177 (0%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF ELGL ++++AV + G P+ IQ IPA+L G ++ + +G+G+T + LP++Q
Sbjct: 2 SFSELGLSDKLVRAVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPMLQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
+L KP RA+VL T E A Q + RL S + GGV +
Sbjct: 62 LLSESAPQRQGKPA-VRALVLTPTRELAAQVEESVRNYGKYVRLRSMVMFGGVGINPQIE 120
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +++ATP +L H+ R + + +VLDEAD + D GF +I KILN L
Sbjct: 121 QLRRGVEIVVATPGRLLDHVSQRTIDLSSVELLVLDEADRMLDMGFIHDIRKILNVL 177
>gi|74207549|dbj|BAE40025.1| unnamed protein product [Mus musculus]
Length = 622
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 111/207 (53%), Gaps = 15/207 (7%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239
Query: 200 VQMLRRDEALLPM-KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSS------MENG 252
+ E LP K P +++C + E A Q + ++ + DSS + G
Sbjct: 240 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 299
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
G+S K + + M++ATP ++ ++ + VS D RY+ LDEAD++ D GF +I
Sbjct: 300 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADSMIDMGFEGDIR 359
Query: 313 KILNPLKDSALKSNGQGFQTILVTAAI 339
I + K GQ QT+L +A +
Sbjct: 360 TIFSYFK-------GQR-QTLLFSATM 378
>gi|152992308|ref|YP_001358029.1| ATP-dependent RNA helicase [Sulfurovum sp. NBC37-1]
gi|151424169|dbj|BAF71672.1| ATP-dependent RNA helicase [Sulfurovum sp. NBC37-1]
Length = 447
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 121/231 (52%), Gaps = 13/231 (5%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF L L + + +E G P+ IQ IPA+L+G++ + S+ +GSG+TLAYLLP +Q
Sbjct: 2 SFASLKLSTALTELLEGEGYARPTPIQQKLIPALLDGQNAIASAQTGSGKTLAYLLPALQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
+ + + +PR +L T+E A Q + +++ + L+ + GG +
Sbjct: 62 QINPEAE--KVTHHYPRLFILSPTKELAQQIYEVSRPFVNALDLNVVLLQGGGRRTVETE 119
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDS 321
+ ++IATP L+HIE +++ IR++V+DEAD +FD GF + KI + +
Sbjct: 120 RLKKGVDVIIATPQRALEHIEAQHIDIKAIRHLVVDEADMMFDMGFVGYLEKIFTMMTER 179
Query: 322 ALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLER---DNAGKVTAMLLEM 369
+ Q I+V+A I + + + ++ L+R D GK+ + +M
Sbjct: 180 S--------QKIIVSATITPRVIKLAKTYIKPLKRIELDPPGKIADTITQM 222
>gi|145588789|ref|YP_001155386.1| DEAD/DEAH box helicase [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
gi|145047195|gb|ABP33822.1| DEAD/DEAH box helicase domain protein [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
Length = 473
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 108/204 (52%), Gaps = 9/204 (4%)
Query: 122 LSNIASEREKSSGS--------NAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIP 173
++N A+E ++G+ N +F + GL ++ KAV + G +P+ IQ IP
Sbjct: 1 MTNTATEITSTTGAGDQATPSDNTPATITFADFGLDPKIQKAVAEQGYSIPTPIQAQSIP 60
Query: 174 AVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQG 232
VL G ++ ++ +G+G+T A++LP++Q + R + HP RA+VL T E A Q
Sbjct: 61 HVLAGSDLMGAAQTGTGKTAAFVLPIIQQILRHASNSASPARHPIRALVLTPTRELAVQV 120
Query: 233 FHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIR 292
A S L +++ GGV K + + +LIATP +L HI + + +
Sbjct: 121 AENAASYSKHTDLRAAVVYGGVDMKEQVAILRNGVEILIATPGRLLDHIGSKVANLSQVE 180
Query: 293 YVVLDEADTLFDRGFGPEISKILN 316
+VLDEAD + D GF P++ +I++
Sbjct: 181 ILVLDEADRMLDMGFLPDLQRIID 204
>gi|37197585|dbj|BAC93424.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
Length = 441
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 97/178 (54%), Gaps = 3/178 (1%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V+ +F +L L ++ A+E+MG P++IQ IP L G+ ++ S+ +G+G+T A++LP
Sbjct: 34 VIRTFADLDLDPNLLSAIEEMGYERPTQIQAEAIPQALEGRDILASAPTGTGKTAAFVLP 93
Query: 199 LVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
+Q L + KP R ++L T E A Q A+ ++ L+ GGV +
Sbjct: 94 ALQYL---QDFPRRKPGPARVLILTPTRELAMQVADQARALAKNTSLNIFTITGGVQYQE 150
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
D+ +++ATP ++++I+ C I +++LDEAD + D GF P + ++ N
Sbjct: 151 HADILATTQDIVVATPGRLMEYIQAERFDCRAIEWLILDEADRMLDMGFAPTVDRLSN 208
>gi|54302661|ref|YP_132654.1| ATP-dependent RNA helicase [Photobacterium profundum SS9]
gi|46916085|emb|CAG22854.1| putative ATP-dependent RNA helicase [Photobacterium profundum SS9]
Length = 474
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 120/231 (51%), Gaps = 20/231 (8%)
Query: 125 IASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLS 184
+ SE E+ S ++ F++LGL ++K + +G +EIQ +P + GK V+ S
Sbjct: 15 VNSESERFYRS---IILHFKDLGLDPRLLKKLTHLGFERATEIQRTAVPVAIMGKDVLAS 71
Query: 185 SGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 244
S +GSG+TLA+LLP +Q + R + P R ++L T E A Q F + ++
Sbjct: 72 SKTGSGKTLAFLLPAMQRMYRGK---PFTRRDQRVLILTPTRELAKQVFAQLRTLNAGTP 128
Query: 245 LDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 303
D ++ GG + + +++ P+ ++ATP H+E R+ S D + ++LDEAD +
Sbjct: 129 YDGALIVGGENFNDQVKEFRKDPM-FVVATPGRFADHLEHRSTSLDGLEMLILDEADRML 187
Query: 304 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAA-----IAEMLGEQLSS 349
D GF P++ +I +N + QT++ +A + EM E L++
Sbjct: 188 DLGFAPQLRRIHEL-------ANHRRRQTLMFSATMDNEDVIEMASEMLNA 231
>gi|312796956|ref|YP_004029878.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454]
gi|312168731|emb|CBW75734.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454]
Length = 508
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 103/185 (55%), Gaps = 15/185 (8%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF GL A +++A+ + G P+ IQ IP VL G+ V+ ++ +G+G+T ++ LP++Q
Sbjct: 43 SFDGFGLAAPILQAIGEQGYTKPTPIQAQAIPIVLAGRDVMGAAQTGTGKTASFSLPIIQ 102
Query: 202 MLRRDEALLPMKPM------HP-RAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGG 253
L LP+ HP RA++L T E ADQ ++ + H A L S++ GG
Sbjct: 103 RL------LPLASTSASPARHPVRALILTPTRELADQVAANVHAYAKHTA-LRSAVVFGG 155
Query: 254 VSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISK 313
V + +LIATP +L H++ ++ S ++ +VLDEAD + D GF P++ +
Sbjct: 156 VDMNPQTAELRRGVEILIATPGRLLDHVQQKSTSLAQVQMLVLDEADRMLDMGFLPDLQR 215
Query: 314 ILNPL 318
ILN L
Sbjct: 216 ILNLL 220
>gi|392341227|ref|XP_003754285.1| PREDICTED: probable ATP-dependent RNA helicase DDX41-like [Rattus
norvegicus]
Length = 796
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 111/207 (53%), Gaps = 15/207 (7%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ L A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 354 IKSFKEMKLPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 413
Query: 200 VQMLRRDEALLPM-KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSS------MENG 252
+ E LP K P +++C + E A Q + ++ + DSS + G
Sbjct: 414 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLHCALCIG 473
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
GVS K + + +++ATP ++ ++ + VS D RY+ LDEAD + D GF +I
Sbjct: 474 GVSLKEQMETMRHGVHIMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 533
Query: 313 KILNPLKDSALKSNGQGFQTILVTAAI 339
I + K GQ QT+L +A +
Sbjct: 534 TIFSYFK-------GQ-RQTLLFSATM 552
>gi|289668397|ref|ZP_06489472.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. musacearum
NCPPB 4381]
Length = 460
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 103/201 (51%), Gaps = 10/201 (4%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL +++A+ + G P+ IQ IP VL ++ + +G+G+T A+ LPL+Q
Sbjct: 2 SFESLGLAPFLLRALAEQGYETPTAIQQQAIPLVLADHDLLAGAQTGTGKTAAFGLPLLQ 61
Query: 202 MLRRDEALLPMK-PMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE 260
L + P+ P PRA++L T E A Q + S R+ S++ GGV
Sbjct: 62 HL--GTSPQPVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQL 119
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 320
D + +LIA P ++ HIE R+V I ++LDEAD + D GF P I +IL L
Sbjct: 120 DALRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPR 179
Query: 321 SALKSNGQGFQTILVTAAIAE 341
Q QT+L +A E
Sbjct: 180 -------QDRQTLLFSATFEE 193
>gi|407068274|ref|ZP_11099112.1| ATP-dependent RNA helicase [Vibrio cyclitrophicus ZF14]
Length = 423
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/244 (28%), Positives = 120/244 (49%), Gaps = 17/244 (6%)
Query: 137 AEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYL 196
+E SF +LGL ++ + ++ P+ +Q IP VL GK V+ + +G+G+T A+
Sbjct: 2 SESTKSFNQLGLSEHLLATLAELNFTAPTSVQEQAIPLVLEGKDVLAGAQTGTGKTAAFG 61
Query: 197 LPLVQ-MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS 255
LP++Q ++ + ++P P RA+VL T E A Q F + + + GGVS
Sbjct: 62 LPIIQRLIETKDNIIP-NPKLVRALVLVPTRELAQQVFDNVTEYAKGTDIKVVVAYGGVS 120
Query: 256 SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
K D +L+ATP ++ H+ +N+ +VLDEAD + D GF P+I +IL
Sbjct: 121 MKVQTDNLRGGADILVATPGRLIDHMFTKNIMLSHTEVLVLDEADRMLDMGFMPDIKRIL 180
Query: 316 NPLKDSALKSNGQGFQTILVTA-------AIAEMLGEQLSSLMECLERDNAGKVTAMLLE 368
+ + + QT+ +A AIA + + S + + A VT M+
Sbjct: 181 SRMNEVR--------QTLFFSATFDNKIKAIAHRMMQSPSEIQVTPKNSTAETVTQMVYP 232
Query: 369 MDQA 372
+D++
Sbjct: 233 VDKS 236
>gi|343500583|ref|ZP_08738474.1| ATP-dependent RNA helicase SrmB [Vibrio tubiashii ATCC 19109]
gi|418480980|ref|ZP_13050032.1| ATP-dependent RNA helicase SrmB [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
gi|342820153|gb|EGU54982.1| ATP-dependent RNA helicase SrmB [Vibrio tubiashii ATCC 19109]
gi|384571425|gb|EIF01959.1| ATP-dependent RNA helicase SrmB [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
Length = 410
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 98/176 (55%), Gaps = 3/176 (1%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F EL L ++ A+E+MG P++IQ IP L+G+ ++ S+ +G+G+T A++LP
Sbjct: 1 MIRNFAELELDPNLLLAIEEMGYDRPTQIQAEAIPQALDGRDILASAPTGTGKTAAFVLP 60
Query: 199 LVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
+Q L + KP R ++L T E A Q A+ ++ +L+ GGV +
Sbjct: 61 ALQYL---QDFPRRKPGPARILILTPTRELAMQVADQARALAKHTKLNIFTITGGVQYQE 117
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
++ +++ATP ++++I C I +++LDEAD + D GFGP + ++
Sbjct: 118 HAEILGKTQDIVVATPGRLMEYINAERFDCRAIEWLILDEADRMLDMGFGPTVDRL 173
>gi|355750468|gb|EHH54806.1| hypothetical protein EGM_15715 [Macaca fascicularis]
Length = 622
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/239 (29%), Positives = 122/239 (51%), Gaps = 15/239 (6%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239
Query: 200 VQMLRRDEALLPM-KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSS------MENG 252
+ E LP K P +++C + E A Q + ++ + DSS + G
Sbjct: 240 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 299
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
G+S K + + M++ATP ++ ++ + VS D RY+ LDEAD + D GF +I
Sbjct: 300 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 359
Query: 313 KILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAGKVTAMLLEMDQ 371
I + K GQ QT+L +A + + + S + N G+ A LE+ Q
Sbjct: 360 TIFSYFK-------GQ-RQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLEVIQ 410
>gi|281209095|gb|EFA83270.1| putative RNA helicase [Polysphondylium pallidum PN500]
Length = 1070
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 109/202 (53%), Gaps = 15/202 (7%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
FQ + L + KA+ + G VP+ IQ IP +L G VV + +GSG+T A+++P++Q
Sbjct: 259 FQSMELHKTLFKAIVRKGFKVPTPIQRKTIPLILAGSDVVAMARTGSGKTAAFVVPMIQK 318
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS-SKALED 261
L + RAI+L T E A Q + + K ++ + L S + GG S +
Sbjct: 319 LGEHSI-----KVGARAIILSPTRELAIQTYKVVKDFTYGSNLRSCLVVGGDSMEDQFAE 373
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDS 321
++ P +++ATP ++ H+++ + ++Y+V DEAD LF+ GF +++ I++ L D+
Sbjct: 374 LARNP-DIIVATPGRLVHHLQEVGMGLSTVQYIVFDEADRLFEMGFQQQLNDIVSKLSDN 432
Query: 322 ALKSNGQGFQTILVTAAIAEML 343
QT+L +A + ML
Sbjct: 433 R--------QTLLFSATLPSML 446
>gi|74191640|dbj|BAE30391.1| unnamed protein product [Mus musculus]
Length = 622
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 110/207 (53%), Gaps = 15/207 (7%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239
Query: 200 VQMLRRDEALLPM-KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSS------MENG 252
+ E LP K P +++C + E A Q + ++ + DSS + G
Sbjct: 240 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 299
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
G+S K + + M++ATP ++ ++ + VS D RY+ LDEAD + D GF +I
Sbjct: 300 GMSVKEQMETIRHGVHMMVATPGRLMDSLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 359
Query: 313 KILNPLKDSALKSNGQGFQTILVTAAI 339
I + K GQ QT+L +A +
Sbjct: 360 TIFSYFK-------GQ-RQTLLFSATM 378
>gi|149204620|ref|ZP_01881585.1| ATP-dependent RNA helicase RhlE [Roseovarius sp. TM1035]
gi|149141879|gb|EDM29929.1| ATP-dependent RNA helicase RhlE [Roseovarius sp. TM1035]
Length = 506
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 99/177 (55%), Gaps = 4/177 (2%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++ F +L L +++KA+E+ G P+ IQ IP L G+ V+ + +G+G+T ++ LP+
Sbjct: 1 MTKFSDLNLNPKVLKAIEEAGYETPTPIQAEAIPHALVGRDVLGIAQTGTGKTASFTLPM 60
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
+ +L R A M PR++VLC T E A Q S +L ++ GGVS K
Sbjct: 61 LSLLSRGRARARM----PRSLVLCPTRELAAQVAENFDTYSKHLKLTKALLIGGVSFKEQ 116
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ + + + +LIATP +L H E + ++ +V+DEAD + D GF P+I +I +
Sbjct: 117 DKLIDKGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFS 173
>gi|107023254|ref|YP_621581.1| DEAD/DEAH box helicase [Burkholderia cenocepacia AU 1054]
gi|116690337|ref|YP_835960.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
cenocepacia HI2424]
gi|170733675|ref|YP_001765622.1| DEAD/DEAH box helicase [Burkholderia cenocepacia MC0-3]
gi|105893443|gb|ABF76608.1| DEAD/DEAH box helicase-like protein [Burkholderia cenocepacia AU
1054]
gi|116648426|gb|ABK09067.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
HI2424]
gi|169816917|gb|ACA91500.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
MC0-3]
Length = 520
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 101/182 (55%), Gaps = 3/182 (1%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V ++F + GL +++KA+ + G P+ IQ IP VL G+ V+ ++ +G+G+T ++ LP
Sbjct: 31 VDATFDQFGLAPDILKAIVEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLP 90
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSS 256
++Q L HP RA++L T E ADQ ++ + H L S++ GGV
Sbjct: 91 IIQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTP-LRSAVVFGGVDM 149
Query: 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ +LIATP +L H++ + + ++ +VLDEAD + D GF P++ +ILN
Sbjct: 150 NPQSAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILN 209
Query: 317 PL 318
L
Sbjct: 210 LL 211
>gi|423201022|ref|ZP_17187602.1| hypothetical protein HMPREF1167_01185 [Aeromonas veronii AER39]
gi|404618005|gb|EKB14926.1| hypothetical protein HMPREF1167_01185 [Aeromonas veronii AER39]
Length = 416
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 95/175 (54%), Gaps = 2/175 (1%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
+SF EL L + + + ++G P+ IQ IP +L G+ ++ + +G+G+T A++LPL+
Sbjct: 4 ASFAELALSPRLQQTLIELGYAAPTPIQARAIPVILAGRDLMAGAQTGTGKTAAFVLPLL 63
Query: 201 QMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE 260
+ L + +P+ RA+VL T E A Q L S++ GGVS A
Sbjct: 64 EQLLAQPQMASQRPI--RALVLVPTRELAVQVAESVARYGQGTGLTSTLVYGGVSIAAQV 121
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
+ A + +LIATP +L H+ +S D +R++V DEAD + D GF EI +L
Sbjct: 122 EALQAGVDILIATPGRLLDHLRQGALSLDSLRHLVFDEADRMLDMGFMDEIKALL 176
>gi|167855886|ref|ZP_02478636.1| ATP-dependent RNA helicase SrmB [Haemophilus parasuis 29755]
gi|167852974|gb|EDS24238.1| ATP-dependent RNA helicase SrmB [Haemophilus parasuis 29755]
Length = 441
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 97/177 (54%), Gaps = 11/177 (6%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F+EL L E+++A+EK G P+ IQ IP + G+ V+ S+ +G+G+T A+LLP +Q
Sbjct: 6 TFEELDLSPELLQALEKKGYKRPTAIQQETIPPAMEGRDVLGSAPTGTGKTAAFLLPALQ 65
Query: 202 ML----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
L RR KP PR ++L T E A Q A+ ++ L + GGV+ +
Sbjct: 66 HLLDHPRR-------KPGPPRILILTPTRELAMQVAEQAEELAQFTNLKIATITGGVAYQ 118
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+V N +++ATP + Q+I++ N C + ++ DEAD + GFG + KI
Sbjct: 119 NHGEVFNTNQDLVVATPGRLQQYIQEENFDCRSVEILIFDEADRMLQMGFGQDAEKI 175
>gi|167585895|ref|ZP_02378283.1| DEAD/DEAH box helicase domain protein [Burkholderia ubonensis Bu]
Length = 487
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 102/182 (56%), Gaps = 3/182 (1%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V ++F + GL A+++KA+ + G P+ IQ IP VL G+ V+ ++ +G+G+T ++ LP
Sbjct: 9 VDATFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLP 68
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSS 256
++Q L HP RA++L T E ADQ ++ + H L S++ GGV
Sbjct: 69 ILQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYGKHTP-LRSAVVFGGVDM 127
Query: 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ +LIATP +L H++ + + ++ +VLDEAD + D GF P++ +ILN
Sbjct: 128 NPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQMLVLDEADRMLDMGFLPDLQRILN 187
Query: 317 PL 318
L
Sbjct: 188 LL 189
>gi|441503681|ref|ZP_20985683.1| ATP-dependent RNA helicase SrmB [Photobacterium sp. AK15]
gi|441428757|gb|ELR66217.1| ATP-dependent RNA helicase SrmB [Photobacterium sp. AK15]
Length = 411
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 95/175 (54%), Gaps = 3/175 (1%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ F EL L +E+++A+E +G P+ IQ IP L+G+ V+ S+ +G+G+T A+LLP+
Sbjct: 1 MRDFSELELDSELLQAIETIGYARPTVIQAQAIPHALDGRDVLASAPTGTGKTAAFLLPM 60
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
+Q L + KP R +VL T E A Q A+ +S L GG+S
Sbjct: 61 IQHL---QDFPRKKPGPARVLVLTPTRELAIQVADQARELSQFTNLKVFTITGGISYDEH 117
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
++ +++ATP ++++IE C I ++LDEAD + D GFG + KI
Sbjct: 118 AELLGKTQDIVVATPGRLMEYIEAERFDCRAIECLILDEADRMLDMGFGKAVEKI 172
>gi|392373513|ref|YP_003205346.1| ATP-dependent RNA helicase with P-loop hydrolase domain (rhlE gene)
[Candidatus Methylomirabilis oxyfera]
gi|258591206|emb|CBE67503.1| Putative ATP-dependent RNA helicase with P-loop hydrolase domain
(rhlE gene) [Candidatus Methylomirabilis oxyfera]
Length = 479
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 93/176 (52%), Gaps = 10/176 (5%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF L A ++KAV MG P+ IQ V +P +L G+ V+ S+ +GSG+T A+LLP++
Sbjct: 2 SFSSFKLNANLLKAVHNMGFKSPTPIQRVAVPPLLEGRDVMASAVTGSGKTAAFLLPILH 61
Query: 202 MLRRDEALLPMKPMH-PRAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSSKAL 259
L KP RA+VL T E A Q H+ + +H L + GGVS
Sbjct: 62 CLME-------KPRGTTRALVLAPTRELAAQISDHLRELAAHTP-LKGAAVYGGVSMGPQ 113
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
E + +LIATP +L H + I ++VLDEAD + D GF P+I +IL
Sbjct: 114 EQAFRRGVDVLIATPGRLLDHFQYPYARLAGIEHLVLDEADRMLDMGFLPDIRRIL 169
>gi|254247597|ref|ZP_04940918.1| Helicase [Burkholderia cenocepacia PC184]
gi|124872373|gb|EAY64089.1| Helicase [Burkholderia cenocepacia PC184]
Length = 521
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 101/182 (55%), Gaps = 3/182 (1%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V ++F + GL +++KA+ + G P+ IQ IP VL G+ V+ ++ +G+G+T ++ LP
Sbjct: 32 VDATFDQFGLAPDILKAIVEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLP 91
Query: 199 LVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSS 256
++Q L HP RA++L T E ADQ ++ + H L S++ GGV
Sbjct: 92 IIQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTP-LRSAVVFGGVDM 150
Query: 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ +LIATP +L H++ + + ++ +VLDEAD + D GF P++ +ILN
Sbjct: 151 NPQSAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILN 210
Query: 317 PL 318
L
Sbjct: 211 LL 212
>gi|403290044|ref|XP_003936143.1| PREDICTED: probable ATP-dependent RNA helicase DDX41 [Saimiri
boliviensis boliviensis]
Length = 622
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 123/241 (51%), Gaps = 15/241 (6%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239
Query: 200 VQMLRRDEALLPM-KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSS------MENG 252
+ E LP K P +++C + E A Q + ++ + DSS + G
Sbjct: 240 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 299
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
G+S K + + M++ATP ++ ++ + VS D RY+ LDEAD + D GF +I
Sbjct: 300 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 359
Query: 313 KILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAGKVTAMLLEMDQA 372
I + K GQ QT+L +A + + + S + N G+ A L++ Q
Sbjct: 360 TIFSYFK-------GQ-RQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQE 411
Query: 373 E 373
E
Sbjct: 412 E 412
>gi|374335360|ref|YP_005092047.1| DEAD/DEAH box helicase [Oceanimonas sp. GK1]
gi|372985047|gb|AEY01297.1| DEAD-box ATP dependent DNA helicase [Oceanimonas sp. GK1]
Length = 460
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 100/173 (57%), Gaps = 4/173 (2%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F++ GL +++A++ GL P++IQ IP V+ G ++ SS +GSG+TLAYLLP +Q
Sbjct: 7 TFRDFGLDTRLVRALDHQGLNTPTDIQLKAIPVVMAGFDLLASSKTGSGKTLAYLLPALQ 66
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L + AL PRA++L T E A Q + + ++ + + + G + L+
Sbjct: 67 RLMKTRAL---SKRDPRALILAPTRELARQVYAQLRSLAGNSVNIALLLGGENFNDQLKS 123
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+ P +++ATP + H++ R++ + + ++LDEAD + D GF P++ +I
Sbjct: 124 LRRQP-DVIVATPGRLANHLDARSLMLNGLELLILDEADRMLDLGFAPQLERI 175
>gi|356506148|ref|XP_003521849.1| PREDICTED: putative DEAD-box ATP-dependent RNA helicase 29-like
[Glycine max]
Length = 778
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 110/205 (53%), Gaps = 16/205 (7%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F+ LGL + K +++ G VP+ IQ +P +L+G VV + +GSG+T A+L+P M
Sbjct: 20 FESLGLNPNVFKGIKRKGYKVPTPIQRKTMPLILSGSDVVAMARTGSGKTAAFLVP---M 76
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK-ALED 261
L R +P + RA++L T + A Q K + H L S+ GG S + E+
Sbjct: 77 LHRLNQHIPQSGV--RALILSPTRDLALQTLKFTKELGHFTDLRVSLLVGGDSMEIQFEE 134
Query: 262 VSNAPIGMLIATPSEVLQHI-EDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 320
++ +P ++IATP ++ H+ E ++S + YVV DEAD LF GF ++ +IL L
Sbjct: 135 LAQSP-DIIIATPGRLMHHLSEVDDMSLRSVEYVVFDEADCLFGMGFAEQLHQILAQL-- 191
Query: 321 SALKSNGQGFQTILVTAAIAEMLGE 345
G+ QT+L +A + L E
Sbjct: 192 ------GENRQTLLFSATLPSALAE 210
>gi|343518158|ref|ZP_08755152.1| type III restriction enzyme, res subunit [Haemophilus pittmaniae HK
85]
gi|343393954|gb|EGV06504.1| type III restriction enzyme, res subunit [Haemophilus pittmaniae HK
85]
Length = 288
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 96/179 (53%), Gaps = 11/179 (6%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+S F L E++KA++K G P+ +Q IP L G+ ++ S+ +G+G+T A+LLP
Sbjct: 50 LSQFSAFELSPELLKAIDKKGYSRPTAVQNEAIPTALEGRDLLGSAPTGTGKTAAFLLPA 109
Query: 200 VQML----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS 255
+Q L RR KP PR +VL T E A Q ++ + L ++ GGV+
Sbjct: 110 IQHLLDYPRR-------KPGAPRVLVLTPTRELAMQVAEQSEQLCQFTNLKTATITGGVA 162
Query: 256 SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+ ++ N +++ATP +LQ+I + N C + ++LDEAD L GFG + KI
Sbjct: 163 YQNHGEIFNENQDIVVATPGRLLQYIAEENFDCRAVEILILDEADRLLAMGFGQDAEKI 221
>gi|320157377|ref|YP_004189756.1| ATP-dependent RNA helicase SrmB [Vibrio vulnificus MO6-24/O]
gi|319932689|gb|ADV87553.1| ATP-dependent RNA helicase SrmB [Vibrio vulnificus MO6-24/O]
Length = 408
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 97/178 (54%), Gaps = 3/178 (1%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F +L L ++ A+E+MG P++IQ IP L G+ ++ S+ +G+G+T A++LP
Sbjct: 1 MIRTFADLDLDPNLLAAIEEMGYERPTQIQAEAIPQALEGRDILASAPTGTGKTAAFVLP 60
Query: 199 LVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
+Q L + KP R ++L T E A Q A+ ++ L+ GGV +
Sbjct: 61 ALQYL---QDFPRRKPGPARVLILTPTRELAMQVADQARALAKNTSLNIFTITGGVQYQE 117
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
D+ +++ATP ++++I+ C I +++LDEAD + D GF P + ++ N
Sbjct: 118 HADILATTQDIVVATPGRLMEYIQAERFDCRAIEWLILDEADRMLDMGFAPTVDRLSN 175
>gi|293603664|ref|ZP_06686084.1| ATP-dependent RNA helicase RhlE [Achromobacter piechaudii ATCC
43553]
gi|292817932|gb|EFF76993.1| ATP-dependent RNA helicase RhlE [Achromobacter piechaudii ATCC
43553]
Length = 493
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 98/178 (55%), Gaps = 1/178 (0%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F + GL +++++ + G VP+ IQ IP V+ G+ V+ ++ +G+G+T A+ +P++
Sbjct: 18 TFADFGLHPLLLQSIAETGYTVPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTVPILH 77
Query: 202 MLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE 260
L HP RA++L T E ADQ F K S L S++ GGV +
Sbjct: 78 RLMPLANASASPARHPVRALILTPTRELADQVFESVKRYSKQTPLRSAVVFGGVDIGPQK 137
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +L+ATP +L H+E +NV+ + +VLDEAD + D GF P++ +I+ L
Sbjct: 138 EALRRGCEILVATPGRLLDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLERIIRLL 195
>gi|161486658|ref|NP_933453.2| ATP-dependent RNA helicase SrmB [Vibrio vulnificus YJ016]
Length = 408
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 97/178 (54%), Gaps = 3/178 (1%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F +L L ++ A+E+MG P++IQ IP L G+ ++ S+ +G+G+T A++LP
Sbjct: 1 MIRTFADLDLDPNLLSAIEEMGYERPTQIQAEAIPQALEGRDILASAPTGTGKTAAFVLP 60
Query: 199 LVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
+Q L + KP R ++L T E A Q A+ ++ L+ GGV +
Sbjct: 61 ALQYL---QDFPRRKPGPARVLILTPTRELAMQVADQARALAKNTSLNIFTITGGVQYQE 117
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
D+ +++ATP ++++I+ C I +++LDEAD + D GF P + ++ N
Sbjct: 118 HADILATTQDIVVATPGRLMEYIQAERFDCRAIEWLILDEADRMLDMGFAPTVDRLSN 175
>gi|194747377|ref|XP_001956128.1| GF25051 [Drosophila ananassae]
gi|190623410|gb|EDV38934.1| GF25051 [Drosophila ananassae]
Length = 826
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 96/176 (54%), Gaps = 5/176 (2%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
FQ +GL E+IK + K G VP+ IQ IP +L G+ VV + +GSG+T +L+PL +
Sbjct: 40 FQSMGLGFELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEK 99
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDV 262
L+R E P K RA++L T E A Q + K + L + + GG S +
Sbjct: 100 LQRRE---PTKGA--RALILSPTRELAVQTYKFIKELGRFMELKTILVLGGDSMDSQFSA 154
Query: 263 SNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +++ATP L + ++ + I YVV DEAD LF+ GFG ++++ L+ L
Sbjct: 155 IHTCPDVIVATPGRFLHLCVEMDLKLNSIEYVVFDEADRLFEMGFGEQLNETLHRL 210
>gi|27363997|ref|NP_759525.1| ATP-dependent RNA helicase SrmB [Vibrio vulnificus CMCP6]
gi|27360114|gb|AAO09052.1| ATP-dependent RNA helicase SrmB [Vibrio vulnificus CMCP6]
Length = 408
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 97/178 (54%), Gaps = 3/178 (1%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F +L L ++ A+E+MG P++IQ IP L G+ ++ S+ +G+G+T A++LP
Sbjct: 1 MIRTFADLDLDPNLLAAIEEMGYERPTQIQAEAIPQALEGRDILASAPTGTGKTAAFVLP 60
Query: 199 LVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
+Q L + KP R ++L T E A Q A+ ++ L+ GGV +
Sbjct: 61 ALQYL---QDFPRRKPGPARVLILTPTRELAMQVADQARALAKNTSLNIFTITGGVQYQE 117
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
D+ +++ATP ++++I+ C I +++LDEAD + D GF P + ++ N
Sbjct: 118 HADILATTQDIVVATPGRLMEYIQAERFDCRAIEWLILDEADRMLDMGFAPTVDRLSN 175
>gi|194760837|ref|XP_001962639.1| GF14338 [Drosophila ananassae]
gi|190616336|gb|EDV31860.1| GF14338 [Drosophila ananassae]
Length = 1472
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/226 (31%), Positives = 119/226 (52%), Gaps = 13/226 (5%)
Query: 131 KSSGSNA-EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGS 189
K SG N + + F++ GL+ + + V K G VP+ IQ V IP + G+ ++ + +GS
Sbjct: 1046 KVSGENVPKPIKKFEDAGLRTIVTENVIKSGYKVPTPIQKVSIPVINEGRDMMACAQTGS 1105
Query: 190 GRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSM 249
G+T A+LLP++ L D L + P+A+V+ T E A Q F+ A+ + L S+
Sbjct: 1106 GKTAAFLLPILSKLLEDPQDLEIG--KPQAVVVSPTRELAIQIFNEARKFGFESYLKISI 1163
Query: 250 ENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGP 309
GG S K + +LIATP +L ++ ++ +D R+VVLDEAD + D GF
Sbjct: 1164 VYGGTSFKHQNECITKGCHVLIATPGRLLDFVDRTFITFNDTRFVVLDEADRMLDMGFSE 1223
Query: 310 EISKILNPLKDSALKSNGQGFQTILVTAAIAE----MLGEQLSSLM 351
+ KI+ ++S QT++ +A E + GE L++ +
Sbjct: 1224 SMRKIMT---HRTMRSE---HQTLMFSATFPEEIQRLAGEFLNNYV 1263
>gi|432879043|ref|XP_004073424.1| PREDICTED: probable ATP-dependent RNA helicase DDX41-like [Oryzias
latipes]
Length = 614
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 112/209 (53%), Gaps = 19/209 (9%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ ++K ++K G+ P+ IQ GIP VL+G+ ++ + +GSG+TL + LP+
Sbjct: 172 IKSFREMKFPPAILKGLKKKGIVHPTPIQIQGIPTVLSGRDMIGIAFTGSGKTLVFTLPI 231
Query: 200 VQMLRRDEALLP-MKPMHPRAIVLCTTEESADQGFHMAKFISHCA--------RLDSSME 250
+ E LP K P +++C + E A Q + ++ +C +L +++
Sbjct: 232 IMFALEQEKRLPFFKREGPYGLIICPSRELARQTHSIIEY--YCKLLEEEGAPQLRTALC 289
Query: 251 NGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPE 310
GG+S K +V + M++ATP ++ ++ + VS D RY+ LDEAD + D GF +
Sbjct: 290 IGGMSVKEQMEVVKHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEED 349
Query: 311 ISKILNPLKDSALKSNGQGFQTILVTAAI 339
I I + K GQ QT+L +A +
Sbjct: 350 IRTIFSYFK-------GQR-QTLLFSATM 370
>gi|110680443|ref|YP_683450.1| ATP-dependent RNA helicase [Roseobacter denitrificans OCh 114]
gi|109456559|gb|ABG32764.1| ATP-dependent RNA helicase, putative [Roseobacter denitrificans OCh
114]
Length = 505
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 97/174 (55%), Gaps = 4/174 (2%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F EL L +++KA+++ G P+ IQ IP L G+ V+ + +G+G+T ++ LP++ +
Sbjct: 24 FSELNLNPKVLKAIDEAGYETPTPIQAGAIPPALAGRDVLGIAQTGTGKTASFTLPMITL 83
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDV 262
L R A M PR++VLC T E A Q + +L ++ GGVS K + +
Sbjct: 84 LARGRARARM----PRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDKL 139
Query: 263 SNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ + +LIATP +L H E + ++ +V+DEAD + D GF P+I +I +
Sbjct: 140 IDKGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFS 193
>gi|441504834|ref|ZP_20986826.1| ATP-dependent RNA helicase [Photobacterium sp. AK15]
gi|441427416|gb|ELR64886.1| ATP-dependent RNA helicase [Photobacterium sp. AK15]
Length = 415
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/177 (35%), Positives = 102/177 (57%), Gaps = 5/177 (2%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F +LGL A ++KAV ++G P+ IQ IP L GK+++ ++ +G+G+T +++LP+++M
Sbjct: 3 FSKLGLSAPIVKAVNELGYKAPTPIQEKAIPVALTGKNLIAAAQTGTGKTASFVLPILEM 62
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSSKALED 261
LR + + RA+VL T E A Q ++AK+ H L S GGV SK +
Sbjct: 63 LREGQT---QRKKRIRALVLAPTRELAVQVEDNIAKYSKHL-NLTSLAMYGGVDSKQQKQ 118
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +L+ATP +L R V +++ +VLDEAD + D GF +I+KI+ L
Sbjct: 119 KLIEGVDILVATPGRLLDMYTQRAVHFEEVEMLVLDEADRMLDMGFIEDINKIIERL 175
>gi|393910125|gb|EJD75750.1| DEAD box polypeptide 27 [Loa loa]
Length = 684
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 107/211 (50%), Gaps = 13/211 (6%)
Query: 136 NAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAY 195
NAE SF ++ L ++KA+ G P+ IQ IP L G+ + S +G+G+T A+
Sbjct: 136 NAETAISFDQMNLSRALLKAITACGFTEPTRIQSTCIPLALAGRDLCACSATGTGKTAAF 195
Query: 196 LLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS 255
+LP+++ L P + R +VL T E A Q F +++ +S R+D + GG+
Sbjct: 196 MLPVLERL----LYRPQQKAMTRVVVLTPTRELAIQTFQVSRQLSQFMRIDICLCAGGLD 251
Query: 256 SKALEDVSNAPIGMLIATPSEVLQHIEDR-NVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
K E ++IATP ++ H+ + N S ++ +VLDEAD + D F ++ +I
Sbjct: 252 LKTQEAALRQRPDIVIATPGRLIDHLHNAPNFSLVNVEILVLDEADRMLDEAFADQMKEI 311
Query: 315 LNPLKDSALKSNGQGFQTILVTAAIAEMLGE 345
++ Q QT+L +A + + + E
Sbjct: 312 IHLC--------AQNRQTMLFSATMTDQVEE 334
>gi|378823723|ref|ZP_09846322.1| putative ATP-dependent RNA helicase RhlE [Sutterella parvirubra YIT
11816]
gi|378597462|gb|EHY30751.1| putative ATP-dependent RNA helicase RhlE [Sutterella parvirubra YIT
11816]
Length = 639
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 99/180 (55%), Gaps = 5/180 (2%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++SF+ GL ++ A+ +MG P+ IQ IP VL G V+ ++ +G+G+T + LPL
Sbjct: 1 MTSFESFGLDPRILSAIARMGYSEPTPIQTQAIPVVLKGGDVMGAAQTGTGKTAGFGLPL 60
Query: 200 VQML--RRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSS 256
+ + + + ++ P + HP RA++L T E ADQ + L + GGV
Sbjct: 61 LARILPKANTSMSPAR--HPVRALILTPTRELADQVSDNLTAYAADTPLRVGVVYGGVDI 118
Query: 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ D+ I +L ATP +L H+ ++V+ + VVLDEAD + D GF P+IS+IL
Sbjct: 119 RPQADMLRRGIEVLTATPGRLLDHVAQKSVNLSQVEIVVLDEADRMLDMGFLPDISRILQ 178
>gi|118594179|ref|ZP_01551526.1| putative ATP-dependent RNA helicase protein [Methylophilales
bacterium HTCC2181]
gi|118439957|gb|EAV46584.1| putative ATP-dependent RNA helicase protein [Methylophilales
bacterium HTCC2181]
Length = 427
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 97/175 (55%), Gaps = 4/175 (2%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SFQ L A ++KA+++ G P+ IQ IP ++ K V+ S+ +G+G+T A++LP++
Sbjct: 2 SFQTFNLDASILKAIQEAGYDQPTPIQTKSIPEIMLNKHVLASAQTGTGKTAAFVLPILD 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L ++ + + PR +++ T E A Q K S R++S GG+S
Sbjct: 62 KLTKNRS----EGRGPRVLIVSPTRELATQITDSIKKYSRYLRINSITITGGISYGLQNR 117
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ + PI +L+ATP +L + + ++ + ++LDEAD + D GF P+I KI N
Sbjct: 118 MFSKPIDILVATPGRLLDLYQQKKINFKGLEVMILDEADRMLDMGFVPDIRKIYN 172
>gi|426229383|ref|XP_004008770.1| PREDICTED: probable ATP-dependent RNA helicase DDX41 [Ovis aries]
Length = 622
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 110/207 (53%), Gaps = 15/207 (7%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239
Query: 200 VQMLRRDEALLPM-KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSS------MENG 252
+ E LP K P +++C + E A Q + ++ + DSS + G
Sbjct: 240 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 299
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
G+S K + + M++ATP ++ ++ + VS D RY+ LDEAD + D GF +I
Sbjct: 300 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 359
Query: 313 KILNPLKDSALKSNGQGFQTILVTAAI 339
I + K GQ QT+L +A +
Sbjct: 360 TIFSYFK-------GQR-QTLLFSATM 378
>gi|416052217|ref|ZP_11578119.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans serotype e str. SC1083]
gi|347992307|gb|EGY33716.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans serotype e str. SC1083]
Length = 443
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 95/176 (53%), Gaps = 11/176 (6%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F + L E++ A++K G P+ IQ IPA + G V+ S+ +G+G+T A+LLP +Q
Sbjct: 7 FADFDLAPELLNALQKKGYQRPTAIQQETIPAAMEGGDVLGSASTGTGKTAAFLLPAIQH 66
Query: 203 L----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
L RR KP PR +VL T E A Q AK ++ +L + GGV+ +
Sbjct: 67 LLDYPRR-------KPGAPRVLVLTPTRELAMQVAEQAKELACFTKLSIATITGGVAYQN 119
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
++ N +++ATP +LQ+I++ N C + ++ DEAD + GFG + KI
Sbjct: 120 HGEIFNKNQDIVVATPGRLLQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKI 175
>gi|348575047|ref|XP_003473301.1| PREDICTED: probable ATP-dependent RNA helicase DDX41-like [Cavia
porcellus]
Length = 622
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 110/207 (53%), Gaps = 15/207 (7%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239
Query: 200 VQMLRRDEALLPM-KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSS------MENG 252
+ E LP K P +++C + E A Q + ++ + DSS + G
Sbjct: 240 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 299
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
G+S K + + M++ATP ++ ++ + VS D RY+ LDEAD + D GF +I
Sbjct: 300 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 359
Query: 313 KILNPLKDSALKSNGQGFQTILVTAAI 339
I + K GQ QT+L +A +
Sbjct: 360 TIFSYFK-------GQR-QTLLFSATM 378
>gi|444706640|gb|ELW47966.1| putative ATP-dependent RNA helicase DDX41 [Tupaia chinensis]
Length = 587
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 110/207 (53%), Gaps = 15/207 (7%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 145 IKSFKEMKFPAAILRGLKKKGIHQPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 204
Query: 200 VQMLRRDEALLPM-KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSS------MENG 252
+ E LP K P +++C + E A Q + ++ + DSS + G
Sbjct: 205 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 264
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
G+S K + + M++ATP ++ ++ + VS D RY+ LDEAD + D GF +I
Sbjct: 265 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 324
Query: 313 KILNPLKDSALKSNGQGFQTILVTAAI 339
I + K GQ QT+L +A +
Sbjct: 325 TIFSYFK-------GQR-QTLLFSATM 343
>gi|118578871|ref|YP_900121.1| DEAD/DEAH box helicase [Pelobacter propionicus DSM 2379]
gi|118501581|gb|ABK98063.1| DEAD/DEAH box helicase domain protein [Pelobacter propionicus DSM
2379]
Length = 454
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 108/199 (54%), Gaps = 11/199 (5%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F+EL L ++KAV G P+ IQ IP V+ G ++ ++ +G+G+T A++LP +Q
Sbjct: 2 TFEELNLTPAILKAVTACGYTTPTPIQQQAIPVVMTGSDLIATAQTGTGKTAAFVLPALQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L ++ P K PR +VL T E A Q A+ ARL GG+ +
Sbjct: 62 RLSTPSSV-PGK--GPRVLVLTPTRELAGQCIDAARSYGRGARLRCGSILGGMPYREQLR 118
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDS 321
+ +AP+ +++ATP +L H+E +++ + + +VLDEAD + D GF ++ KI++
Sbjct: 119 LLSAPVDLIVATPGRLLDHLERGSIALNRLEMLVLDEADRMLDMGFSEDMEKIVS----- 173
Query: 322 ALKSNGQGFQTILVTAAIA 340
+ Q QT++ TA +
Sbjct: 174 ---AAPQERQTLMFTATMG 189
>gi|134093720|ref|YP_001098795.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
gi|133737623|emb|CAL60666.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
Length = 502
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 93/175 (53%), Gaps = 1/175 (0%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
FQ+ GL E++KA+ G P+ IQ IP VL G V+ ++ +G+G+T + LP++Q+
Sbjct: 25 FQDFGLAPEILKALNDQGYVHPTPIQAEAIPVVLKGMDVMGAAQTGTGKTAGFSLPIIQL 84
Query: 203 LRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L HP RA++L T E ADQ K S L S + GG+
Sbjct: 85 LMAHANSSASPARHPVRALILTPTRELADQVAANVKAYSRHTPLRSLVVFGGMDMTPQTA 144
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ ++IATP +L H++ + ++ + +V+DEAD + D GF P++ +I+N
Sbjct: 145 ALRGGVEIVIATPGRLLDHVQQKTINLSQTQILVMDEADRMLDMGFLPDLQRIIN 199
>gi|339503994|ref|YP_004691414.1| ATP-dependent RNA helicase RhlE [Roseobacter litoralis Och 149]
gi|338757987|gb|AEI94451.1| putative ATP-dependent RNA helicase RhlE [Roseobacter litoralis Och
149]
Length = 484
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 97/174 (55%), Gaps = 4/174 (2%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F EL L +++KA+++ G P+ IQ IP L G+ V+ + +G+G+T ++ LP++ +
Sbjct: 4 FSELNLNPKVLKAIDEAGYETPTPIQAGAIPPALAGRDVLGIAQTGTGKTASFTLPMITL 63
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDV 262
L R A M PR++VLC T E A Q + +L ++ GGVS K + +
Sbjct: 64 LARGRARARM----PRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDKL 119
Query: 263 SNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ + +LIATP +L H E + ++ +V+DEAD + D GF P+I +I +
Sbjct: 120 IDKGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFS 173
>gi|374367571|ref|ZP_09625632.1| helicase [Cupriavidus basilensis OR16]
gi|373100874|gb|EHP41934.1| helicase [Cupriavidus basilensis OR16]
Length = 496
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 98/178 (55%), Gaps = 1/178 (0%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F GL A + +A+ + G P+ IQ IP VL GK V+ ++ +G+G+T + LP++Q
Sbjct: 14 TFDSFGLDARIQRALSEQGYTKPTPIQEQAIPVVLQGKDVMGAAQTGTGKTAGFALPIIQ 73
Query: 202 MLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE 260
L + HP RA++L T E ADQ + + L S++ GGV
Sbjct: 74 RLLPLASASASPARHPVRALMLTPTRELADQVYDNVARYARFTDLRSTVVFGGVDMNPQT 133
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ + +L+ATP +L H++ ++V+ ++ +VLDEAD + D GF P++ +I+N L
Sbjct: 134 EALRRGVEILVATPGRLLDHVQQKSVNLSQVQMLVLDEADRMLDMGFLPDLQRIINLL 191
>gi|334703122|ref|ZP_08518988.1| putative ATP-dependent RNA helicase RhlE [Aeromonas caviae Ae398]
Length = 417
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 119/223 (53%), Gaps = 20/223 (8%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++SF EL L + + + +G P+ +Q IP +L G+ ++ + +G+G+T A++LPL
Sbjct: 3 IASFAELALSPRLQQTLTDLGYAAPTPVQASAIPLILAGRDLMAGAQTGTGKTAAFVLPL 62
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR---LDSSMENGGVSS 256
++ L + +P+ RA+VL T E A Q +A+ ++ AR L S++ GGVS
Sbjct: 63 LEQLLQHPTSDAPRPI--RALVLVPTRELAVQ---VAESVTRYARGTTLTSTLVYGGVSI 117
Query: 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
A + NA + +LIATP +L H+ ++ ++R++V DEAD + D GF EI +L
Sbjct: 118 AAQVEALNAGVDILIATPGRLLDHLRQGGLTLAELRHLVFDEADRMLDMGFMDEIKALLK 177
Query: 317 PLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNA 359
+ QT+L +A + L +L + L RD A
Sbjct: 178 QIPADR--------QTLLFSATC----DDNLFALCKVLLRDPA 208
>gi|242081437|ref|XP_002445487.1| hypothetical protein SORBIDRAFT_07g020310 [Sorghum bicolor]
gi|241941837|gb|EES14982.1| hypothetical protein SORBIDRAFT_07g020310 [Sorghum bicolor]
Length = 666
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 124/235 (52%), Gaps = 16/235 (6%)
Query: 113 SPPQPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGI 172
SP +P++++ + S++ KS GS F+ +GL E+ + V G VP+ IQ +
Sbjct: 33 SPRRPKREKSAGGGSKKSKSGGSKKAKSGGFESMGLCEEVYRGVRHKGYRVPTPIQRKTM 92
Query: 173 PAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQG 232
P +L G V + +GSG+T A+L+P++Q LRR + + RA++L T + A Q
Sbjct: 93 PLILAGVDVAAMARTGSGKTAAFLVPMLQRLRRRDPSAGV-----RALILSPTRDLAMQT 147
Query: 233 FHMAKFISHCARLDSSMENGGVSSKA-LEDVSNAPIGMLIATPSEVLQHIED-RNVSCDD 290
+ L +S+ GG S ++ ED+S P ++IATP ++ H+ D ++++
Sbjct: 148 LKFCIQLGKFTDLRTSIIVGGDSMESQFEDLSECP-DIIIATPGRLMHHLNDVKDMTLRS 206
Query: 291 IRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 345
+ YVV DEAD+LF GF + IL L D+ QT+L +A + L +
Sbjct: 207 VEYVVFDEADSLFSMGFAKHLHDILKKLSDTR--------QTLLFSATLPSALAD 253
>gi|423074241|ref|ZP_17062973.1| DEAD/DEAH box helicase [Desulfitobacterium hafniense DP7]
gi|361854959|gb|EHL06986.1| DEAD/DEAH box helicase [Desulfitobacterium hafniense DP7]
Length = 443
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 100/173 (57%), Gaps = 13/173 (7%)
Query: 136 NAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAY 195
N E SFQELG++AE+++A+ K G+ P+EIQ IP +LN + V S +GSG+TLAY
Sbjct: 3 NMERPESFQELGIQAELVEALAKEGIVQPTEIQKSTIPLILNNRDVAGQSETGSGKTLAY 62
Query: 196 LLPLVQML---RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENG 252
LLP++Q + +R+ +L + P H + L + D H+A I+ A + G
Sbjct: 63 LLPVLQKIDRNKRENQVLVLTPTHE--LALQVQRQIQDLSRHLAATITSAAII------G 114
Query: 253 GVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 304
V+ ++ +E + P +++ + +L+ I+ R +S ++ +VLDEAD L D
Sbjct: 115 NVNIARQIEKLKEKP-HIIVGSAGRILELIQKRKISAQSLKTIVLDEADQLLD 166
>gi|260433500|ref|ZP_05787471.1| putative ATP-dependent RNA helicase RhlE [Silicibacter
lacuscaerulensis ITI-1157]
gi|260417328|gb|EEX10587.1| putative ATP-dependent RNA helicase RhlE [Silicibacter
lacuscaerulensis ITI-1157]
Length = 476
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 100/177 (56%), Gaps = 4/177 (2%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++ F +L L +++KA+E+ G P+ IQ IP L G+ V+ + +G+G+T +++LP+
Sbjct: 1 MTKFTDLNLNPKVLKAIEEAGYETPTPIQEGAIPPALEGRDVLGIAQTGTGKTASFVLPM 60
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
+ +L R A M PR++VLC T E A Q + +L ++ GGVS K
Sbjct: 61 ITLLARGRARARM----PRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQ 116
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ + + + +LIATP +L H E + ++ +V+DEAD + D GF P+I +I +
Sbjct: 117 DALIDRGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFS 173
>gi|344240368|gb|EGV96471.1| putative ATP-dependent RNA helicase DDX41 [Cricetulus griseus]
Length = 622
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 110/207 (53%), Gaps = 15/207 (7%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239
Query: 200 VQMLRRDEALLPM-KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSS------MENG 252
+ E LP K P +++C + E A Q + ++ + DSS + G
Sbjct: 240 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 299
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
G+S K + + M++ATP ++ ++ + VS D RY+ LDEAD + D GF +I
Sbjct: 300 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 359
Query: 313 KILNPLKDSALKSNGQGFQTILVTAAI 339
I + K GQ QT+L +A +
Sbjct: 360 TIFSYFK-------GQR-QTLLFSATM 378
>gi|219668951|ref|YP_002459386.1| DEAD/DEAH box helicase [Desulfitobacterium hafniense DCB-2]
gi|219539211|gb|ACL20950.1| DEAD/DEAH box helicase domain protein [Desulfitobacterium hafniense
DCB-2]
Length = 443
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 100/173 (57%), Gaps = 13/173 (7%)
Query: 136 NAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAY 195
N E SFQELG++AE+++A+ K G+ P+EIQ IP +LN + V S +GSG+TLAY
Sbjct: 3 NMERPESFQELGIQAELVEALAKEGIVQPTEIQKSTIPLILNNRDVAGQSETGSGKTLAY 62
Query: 196 LLPLVQML---RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENG 252
LLP++Q + +R+ +L + P H + L + D H+A I+ A + G
Sbjct: 63 LLPVLQKIDRNKRENQVLVLTPTHE--LALQVQRQIQDLSRHLAATITSAAII------G 114
Query: 253 GVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 304
V+ ++ +E + P +++ + +L+ I+ R +S ++ +VLDEAD L D
Sbjct: 115 NVNIARQIEKLKEKP-HIIVGSAGRILELIQKRKISAQSLKTIVLDEADQLLD 166
>gi|270047502|ref|NP_598820.2| probable ATP-dependent RNA helicase DDX41 [Mus musculus]
gi|341940433|sp|Q91VN6.2|DDX41_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX41; AltName:
Full=DEAD box protein 41
gi|74142777|dbj|BAE33914.1| unnamed protein product [Mus musculus]
Length = 622
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 110/207 (53%), Gaps = 15/207 (7%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239
Query: 200 VQMLRRDEALLPM-KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSS------MENG 252
+ E LP K P +++C + E A Q + ++ + DSS + G
Sbjct: 240 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 299
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
G+S K + + M++ATP ++ ++ + VS D RY+ LDEAD + D GF +I
Sbjct: 300 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 359
Query: 313 KILNPLKDSALKSNGQGFQTILVTAAI 339
I + K GQ QT+L +A +
Sbjct: 360 TIFSYFK-------GQR-QTLLFSATM 378
>gi|226941463|ref|YP_002796537.1| RhlE4 [Laribacter hongkongensis HLHK9]
gi|226716390|gb|ACO75528.1| RhlE4 [Laribacter hongkongensis HLHK9]
Length = 457
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 98/178 (55%), Gaps = 1/178 (0%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F ELGL AE+ +AV+++G P+ IQ IP VL G+ V+ ++ +G+G+T A+ LP++
Sbjct: 3 TFAELGLPAEVQRAVDELGYAEPTPIQARAIPEVLTGRDVLAAAQTGTGKTAAFTLPIIA 62
Query: 202 MLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE 260
LR MHP R ++L T E ADQ + + L + GGV+ +
Sbjct: 63 RLRHYATHSVSPAMHPVRCLILTPTRELADQIAASVQSYTKYLPLRHTCVFGGVNMDPQK 122
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +++ATP +L H+E + + + + +VLDEAD + D GF +I +IL L
Sbjct: 123 ADLMRGMDIVVATPGRLLDHLEQKTIQLNRVEMLVLDEADRMLDMGFILDIRRILAQL 180
>gi|354471937|ref|XP_003498197.1| PREDICTED: probable ATP-dependent RNA helicase DDX41 [Cricetulus
griseus]
Length = 638
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 110/207 (53%), Gaps = 15/207 (7%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 196 IKSFKEMKFPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 255
Query: 200 VQMLRRDEALLPM-KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSS------MENG 252
+ E LP K P +++C + E A Q + ++ + DSS + G
Sbjct: 256 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 315
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
G+S K + + M++ATP ++ ++ + VS D RY+ LDEAD + D GF +I
Sbjct: 316 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 375
Query: 313 KILNPLKDSALKSNGQGFQTILVTAAI 339
I + K GQ QT+L +A +
Sbjct: 376 TIFSYFK-------GQ-RQTLLFSATM 394
>gi|193683780|ref|XP_001952119.1| PREDICTED: ATP-dependent RNA helicase abstrakt-like [Acyrthosiphon
pisum]
Length = 615
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 111/207 (53%), Gaps = 15/207 (7%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ L ++ + + G+ P+ IQ GIP VL+G+ ++ + +GSG+TL ++LPL
Sbjct: 173 LKSFKEMKLNKGIMAGLSQKGIKKPTPIQIQGIPTVLSGRDMIGIAFTGSGKTLVFVLPL 232
Query: 200 VQMLRRDEALLPMKPMH-PRAIVLCTTEESADQGF----HMAKFI--SHCARLDSSMENG 252
+ E LP KP P +++C + E A Q F H F+ S+ RL S + G
Sbjct: 233 LMFCLEQEIKLPFKPNEGPYGLIICPSRELAKQTFDIINHYMTFLERSNYPRLRSCLAIG 292
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
G+ DV + +++ATP ++ ++ + ++ + RY+ +DEAD + D GF ++
Sbjct: 293 GIPVFESLDVIKRGVHIMVATPGRLMDMLDKKMINLEVCRYLCMDEADRMIDMGFEEDVR 352
Query: 313 KILNPLKDSALKSNGQGFQTILVTAAI 339
I + + GQ QT+L +A +
Sbjct: 353 TIFSFFQ-------GQR-QTLLFSATM 371
>gi|148709265|gb|EDL41211.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 [Mus musculus]
Length = 633
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 110/207 (53%), Gaps = 15/207 (7%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 191 IKSFKEMKFPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 250
Query: 200 VQMLRRDEALLPM-KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSS------MENG 252
+ E LP K P +++C + E A Q + ++ + DSS + G
Sbjct: 251 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 310
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
G+S K + + M++ATP ++ ++ + VS D RY+ LDEAD + D GF +I
Sbjct: 311 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 370
Query: 313 KILNPLKDSALKSNGQGFQTILVTAAI 339
I + K GQ QT+L +A +
Sbjct: 371 TIFSYFK-------GQR-QTLLFSATM 389
>gi|126727175|ref|ZP_01743012.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium
HTCC2150]
gi|126703603|gb|EBA02699.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium
HTCC2150]
Length = 574
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 98/176 (55%), Gaps = 4/176 (2%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++ F EL L +++KAV + G P+ IQ IP L GK V+ + +G+G+T ++ LP+
Sbjct: 1 MTKFSELSLDPKVLKAVAETGYESPTPIQAGAIPPALEGKDVLGIAQTGTGKTASFTLPM 60
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
+ +L + A M PR++VL T E A Q S ++L ++ GGVS K
Sbjct: 61 ISLLSKGRARARM----PRSLVLAPTRELAAQVAENFDAYSKYSKLTKALLIGGVSFKEQ 116
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
+ + + + +LIATP +L H+E + ++ +V+DEAD + D GF P+I +I
Sbjct: 117 DKLIDRGVDVLIATPGRLLDHVERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIF 172
>gi|15030112|gb|AAH11308.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 [Mus musculus]
Length = 622
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 110/207 (53%), Gaps = 15/207 (7%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239
Query: 200 VQMLRRDEALLPM-KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSS------MENG 252
+ E LP K P +++C + E A Q + ++ + DSS + G
Sbjct: 240 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 299
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
G+S K + + M++ATP ++ ++ + VS D RY+ LDEAD + D GF +I
Sbjct: 300 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 359
Query: 313 KILNPLKDSALKSNGQGFQTILVTAAI 339
I + K GQ QT+L +A +
Sbjct: 360 TIFSYFK-------GQ-RQTLLFSATM 378
>gi|359299191|ref|ZP_09185030.1| ATP-dependent RNA helicase SrmB [Haemophilus [parainfluenzae] CCUG
13788]
gi|402306790|ref|ZP_10825827.1| DEAD/DEAH box helicase [Haemophilus sputorum HK 2154]
gi|400374139|gb|EJP27062.1| DEAD/DEAH box helicase [Haemophilus sputorum HK 2154]
Length = 445
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 100/179 (55%), Gaps = 11/179 (6%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ +F+EL L +++KA+ + G P+ +Q IP L+G+ ++ S+ +G+G+T A+LLP
Sbjct: 7 ILTFEELDLSPQLLKALAQKGYKRPTSVQEQTIPYALDGRDLLGSAPTGTGKTAAFLLPA 66
Query: 200 VQML----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS 255
+Q L RR KP PR ++L T E A Q A+ + +L + GGV+
Sbjct: 67 IQHLLDYPRR-------KPGAPRILILTPTRELAMQVAEEAQSFAQFTKLSIATITGGVA 119
Query: 256 SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+ +V N+ +++ATP ++Q+I++ N C + ++ DEAD + GFG + KI
Sbjct: 120 YQNHGEVFNSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKI 178
>gi|294929941|ref|XP_002779431.1| DEAD box ATP-dependent RNA helicase, putative [Perkinsus marinus
ATCC 50983]
gi|239888539|gb|EER11226.1| DEAD box ATP-dependent RNA helicase, putative [Perkinsus marinus
ATCC 50983]
Length = 863
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 97/174 (55%), Gaps = 5/174 (2%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+FQ +GL + KA++KMG P+ IQ IP +L G VV + +GSG+T A+++P++Q
Sbjct: 24 AFQTMGLSDPLFKAIQKMGYNQPTPIQRKAIPVILGGSDVVAMARTGSGKTAAFVIPMIQ 83
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L+ ++ RA++L T E A Q + + + L + GG S ++ D
Sbjct: 84 TLKGHSEVVG-----ARAVILSPTRELAMQTIKVTRMLGKFTDLRLCLIVGGHSMESQFD 138
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
++ +LI TP ++ H+ + ++S ++Y+V DEAD LF+ GF ++ IL
Sbjct: 139 RLSSNPDVLICTPGRLVHHMVEADLSLQRVQYIVFDEADRLFEMGFSDDMQTIL 192
>gi|339324706|ref|YP_004684399.1| ATP-dependent RNA helicase RhlE [Cupriavidus necator N-1]
gi|338164863|gb|AEI75918.1| ATP-dependent RNA helicase RhlE [Cupriavidus necator N-1]
Length = 532
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 96/183 (52%), Gaps = 7/183 (3%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF ELGL ++++AV + G P+ IQ IPA+L G ++ + +G+G+T + LP++Q
Sbjct: 2 SFSELGLSDKIVRAVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPMLQ 61
Query: 202 MLRRDEALLPMKPMHP-----RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS- 255
ML A P RA+VL T E A Q + RL S + GGV
Sbjct: 62 MLSDSAARGANGAQRPARLPVRALVLTPTRELAAQVEESVRNYGKYLRLRSMVMFGGVGI 121
Query: 256 SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
+ +E + + +++ATP +L H+ R + + +VLDEAD + D GF +I KIL
Sbjct: 122 NPQIEQLKRG-VEIVVATPGRLLDHVSQRTIDLSQVELLVLDEADRMLDMGFIHDIRKIL 180
Query: 316 NPL 318
N L
Sbjct: 181 NVL 183
>gi|7022398|dbj|BAA91585.1| unnamed protein product [Homo sapiens]
Length = 622
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 110/207 (53%), Gaps = 15/207 (7%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 180 IKSFKEMKFPATILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239
Query: 200 VQMLRRDEALLPM-KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSS------MENG 252
+ E LP K P +++C + E A Q + ++ + DSS + G
Sbjct: 240 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 299
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
G+S K + + M++ATP ++ ++ + VS D RY+ LDEAD + D GF +I
Sbjct: 300 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDTGFEGDIR 359
Query: 313 KILNPLKDSALKSNGQGFQTILVTAAI 339
I + K GQ QT+L +A +
Sbjct: 360 TIFSYFK-------GQR-QTLLFSATM 378
>gi|153207356|ref|ZP_01946093.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii 'MSU
Goat Q177']
gi|161830442|ref|YP_001596593.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii RSA
331]
gi|165918485|ref|ZP_02218571.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii Q321]
gi|120576665|gb|EAX33289.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii 'MSU
Goat Q177']
gi|161762309|gb|ABX77951.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii RSA
331]
gi|165917853|gb|EDR36457.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii Q321]
Length = 411
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 126/239 (52%), Gaps = 18/239 (7%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL AE+++A+ + G P+ +Q IP +L + V++++ +G+G+T + LPL+Q
Sbjct: 2 SFEVLGLSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQ 61
Query: 202 ML--RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
L R KP+ RA++L T E A Q F + L +++ +GGVS K
Sbjct: 62 RLFVSRPPLQRSAKPV-IRALILTPTRELAVQVFECVRAYGKYLPLKATVVHGGVSIKPQ 120
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319
+ + +L+ATP +L + ++ + + VLDEAD + D GF P+I +IL L
Sbjct: 121 INHLRRGVDILVATPGRLLDLVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLLP 180
Query: 320 DSALKSNGQGFQTILVTAA----IAEMLGEQLSS--LMECLERDN-AGKVTAMLLEMDQ 371
+S Q +L +A I E+ + L S L+E R+ A ++T ++ +D+
Sbjct: 181 ESR--------QNLLFSATFSKEIKELTDKLLHSPALIEVARRNTAAARITHVVHPVDR 231
>gi|403251953|ref|ZP_10918268.1| DNA/RNA helicase, superfamily II [actinobacterium SCGC AAA027-L06]
gi|402914698|gb|EJX35706.1| DNA/RNA helicase, superfamily II [actinobacterium SCGC AAA027-L06]
Length = 432
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 131/253 (51%), Gaps = 22/253 (8%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ELG+ +IK + G+ P IQ +P + GK ++ +GSG+TLA+ L L+
Sbjct: 2 SFKELGVNPALIKVLHAAGIEKPFPIQKATLPDAIAGKDILGRGQTGSGKTLAFGLALMS 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS-SKALE 260
L A PM P A++L T E A Q + +S L+S + GG+S SK ++
Sbjct: 62 RLAGKTA----APMRPLALILSPTRELAMQISDVIAPLSRTVNLNSQVVAGGLSYSKQIQ 117
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 320
+ A + +++ATP ++ I+ +++ DDI VLDEAD + D GF P++ +IL+ K
Sbjct: 118 ALKRA-VPIVVATPGRLIDLIQKKHIKLDDIEITVLDEADQMADMGFLPDVKRILDLTK- 175
Query: 321 SALKSNGQGFQTILVTAAIAEMLGEQLSSLME-------CLERDNAGKVTAMLLEMDQAE 373
G Q +L +A + + + + ++ E+ AG +T +L ++QA
Sbjct: 176 -------PGGQRMLFSATLDKDVDSLVKKYLKNPVTHSLANEKSTAGNMTHHVLILEQAH 228
Query: 374 VFDLTESQDALKK 386
DL SQ A +K
Sbjct: 229 -KDLITSQIAARK 240
>gi|62896755|dbj|BAD96318.1| DEAD-box protein abstrakt variant [Homo sapiens]
Length = 622
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 110/207 (53%), Gaps = 15/207 (7%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239
Query: 200 VQMLRRDEALLPM-KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSS------MENG 252
+ E LP K P +++C + E A Q + ++ + DSS + G
Sbjct: 240 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 299
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
G+S K + + M++ATP ++ ++ + VS D RY+ LDEAD + D GF +I
Sbjct: 300 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 359
Query: 313 KILNPLKDSALKSNGQGFQTILVTAAI 339
I + K GQ QT+L +A +
Sbjct: 360 TIFSYFK-------GQR-QTLLFSATM 378
>gi|259155174|ref|NP_001158829.1| ATP-dependent RNA helicase DDX54 [Salmo salar]
gi|223647616|gb|ACN10566.1| ATP-dependent RNA helicase DDX54 [Salmo salar]
Length = 875
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 116/230 (50%), Gaps = 20/230 (8%)
Query: 116 QPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAV 175
+P+ ++L ++++K SG FQ +GL + K V K G VP+ IQ IP +
Sbjct: 59 EPDTRELVRAQNKKKKKSGG-------FQSMGLSYPVFKGVMKKGYKVPTPIQRKTIPVI 111
Query: 176 LNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHM 235
L+GK +V + +GSG+T A+L+P+ + L+ +P RA++L T E A Q
Sbjct: 112 LDGKDMVAMARTGSGKTAAFLVPMFEKLK-----VPQAQTGARALILTPTRELALQTMKF 166
Query: 236 AKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 295
K + L +++ GG + ++I TP ++ + + N+ + YVV
Sbjct: 167 TKELGKFTGLKTALILGGDRMDDQFAALHENPDIIIGTPGRLMHVVMEMNLKLQSVEYVV 226
Query: 296 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 345
DEAD LF+ GF ++ +I+ L D+ QT+L +A + ++L E
Sbjct: 227 FDEADRLFEMGFADQLQEIIRRLPDNR--------QTLLFSATLPKLLVE 268
>gi|301785524|ref|XP_002928176.1| PREDICTED: probable ATP-dependent RNA helicase DDX41-like
[Ailuropoda melanoleuca]
Length = 622
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 110/207 (53%), Gaps = 15/207 (7%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239
Query: 200 VQMLRRDEALLPM-KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSS------MENG 252
+ E LP K P +++C + E A Q + ++ + DSS + G
Sbjct: 240 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 299
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
G+S K + + M++ATP ++ ++ + VS D RY+ LDEAD + D GF +I
Sbjct: 300 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 359
Query: 313 KILNPLKDSALKSNGQGFQTILVTAAI 339
I + K GQ QT+L +A +
Sbjct: 360 TIFSYFK-------GQR-QTLLFSATM 378
>gi|47222980|emb|CAF99136.1| unnamed protein product [Tetraodon nigroviridis]
Length = 509
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 113/209 (54%), Gaps = 19/209 (9%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ L ++K ++K G+ P+ IQ G+P VL+G+ ++ + +GSG+TL + LP+
Sbjct: 99 IKSFREMKLPPAILKGLKKKGIVHPTPIQIQGMPTVLSGRDMIGIAFTGSGKTLVFTLPI 158
Query: 200 VQMLRRDEALLPM-KPMHPRAIVLCTTEESADQGFHMAKFISHCA--------RLDSSME 250
+ E LP K P +++C + E A Q + ++ +C +L +++
Sbjct: 159 IMFCLEQEKRLPFCKREGPYGLIICPSRELARQTHGIIEY--YCKLLEEEGAPQLRTALC 216
Query: 251 NGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPE 310
GG+S K +V + M++ATP ++ ++ + VS D RY+ LDEAD + D GF +
Sbjct: 217 IGGMSVKEQMEVIKHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEED 276
Query: 311 ISKILNPLKDSALKSNGQGFQTILVTAAI 339
I I + K GQ QT+L +A +
Sbjct: 277 IRTIFSYFK-------GQR-QTLLYSATM 297
>gi|416067076|ref|ZP_11582167.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans serotype f str. D18P1]
gi|348002340|gb|EGY43039.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans serotype f str. D18P1]
Length = 443
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 95/176 (53%), Gaps = 11/176 (6%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F + L E++ A++K G P+ IQ IPA + G V+ S+ +G+G+T A+LLP +Q
Sbjct: 7 FADFDLAPELLNALQKKGYQRPTAIQQETIPAAMGGGDVLGSAPTGTGKTAAFLLPAIQH 66
Query: 203 L----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
L RR KP PR +VL T E A Q AK ++ +L + GGV+ +
Sbjct: 67 LLDYPRR-------KPGAPRVLVLTPTRELAMQVAEQAKELACFTKLSIATITGGVAYQN 119
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
++ N +++ATP +LQ+I++ N C + ++ DEAD + GFG + KI
Sbjct: 120 HGEIFNKNQDIVVATPGRLLQYIKEENFDCRTVEILIFDEADRMLQMGFGQDAEKI 175
>gi|21071032|ref|NP_057306.2| probable ATP-dependent RNA helicase DDX41 [Homo sapiens]
gi|55625482|ref|XP_518135.1| PREDICTED: probable ATP-dependent RNA helicase DDX41 isoform 3 [Pan
troglodytes]
gi|397470614|ref|XP_003806913.1| PREDICTED: probable ATP-dependent RNA helicase DDX41 [Pan paniscus]
gi|426351200|ref|XP_004043145.1| PREDICTED: probable ATP-dependent RNA helicase DDX41 [Gorilla
gorilla gorilla]
gi|20532370|sp|Q9UJV9.2|DDX41_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX41; AltName:
Full=DEAD box protein 41; AltName: Full=DEAD box protein
abstrakt homolog
gi|15930065|gb|AAH15476.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 [Homo sapiens]
gi|119605387|gb|EAW84981.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41, isoform CRA_d [Homo
sapiens]
gi|189067937|dbj|BAG37875.1| unnamed protein product [Homo sapiens]
gi|306921323|dbj|BAJ17741.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 [synthetic construct]
gi|325463517|gb|ADZ15529.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 [synthetic construct]
gi|410219864|gb|JAA07151.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 [Pan troglodytes]
gi|410264084|gb|JAA20008.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 [Pan troglodytes]
gi|410289890|gb|JAA23545.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 [Pan troglodytes]
Length = 622
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 110/207 (53%), Gaps = 15/207 (7%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239
Query: 200 VQMLRRDEALLPM-KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSS------MENG 252
+ E LP K P +++C + E A Q + ++ + DSS + G
Sbjct: 240 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 299
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
G+S K + + M++ATP ++ ++ + VS D RY+ LDEAD + D GF +I
Sbjct: 300 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 359
Query: 313 KILNPLKDSALKSNGQGFQTILVTAAI 339
I + K GQ QT+L +A +
Sbjct: 360 TIFSYFK-------GQR-QTLLFSATM 378
>gi|417515860|gb|JAA53735.1| putative ATP-dependent RNA helicase DDX41 [Sus scrofa]
Length = 622
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 110/207 (53%), Gaps = 15/207 (7%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239
Query: 200 VQMLRRDEALLPM-KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSS------MENG 252
+ E LP K P +++C + E A Q + ++ + DSS + G
Sbjct: 240 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 299
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
G+S K + + M++ATP ++ ++ + VS D RY+ LDEAD + D GF +I
Sbjct: 300 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 359
Query: 313 KILNPLKDSALKSNGQGFQTILVTAAI 339
I + K GQ QT+L +A +
Sbjct: 360 TIFSYFK-------GQR-QTLLFSATM 378
>gi|387121338|ref|YP_006287221.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|415759167|ref|ZP_11481695.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans D17P-3]
gi|416046168|ref|ZP_11575626.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans serotype d str. I63B]
gi|429732438|ref|ZP_19267051.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans Y4]
gi|347994809|gb|EGY36054.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans serotype d str. I63B]
gi|348655113|gb|EGY70595.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans D17P-3]
gi|385875830|gb|AFI87389.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|429156247|gb|EKX98883.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans Y4]
Length = 443
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 95/176 (53%), Gaps = 11/176 (6%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F + L E++ A++K G P+ IQ IPA + G V+ S+ +G+G+T A+LLP +Q
Sbjct: 7 FADFDLAPELLNALQKKGYQRPTAIQQETIPAAMGGGDVLGSAPTGTGKTAAFLLPAIQH 66
Query: 203 L----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
L RR KP PR +VL T E A Q AK ++ +L + GGV+ +
Sbjct: 67 LLDYPRR-------KPGAPRVLVLTPTRELAMQVAEQAKELACFTKLSIATITGGVAYQN 119
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
++ N +++ATP +LQ+I++ N C + ++ DEAD + GFG + KI
Sbjct: 120 HGEIFNKNQDIVVATPGRLLQYIKEENFDCRTVEILIFDEADRMLQMGFGQDAEKI 175
>gi|126740399|ref|ZP_01756087.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. SK209-2-6]
gi|126718535|gb|EBA15249.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. SK209-2-6]
Length = 506
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 109/204 (53%), Gaps = 5/204 (2%)
Query: 113 SPPQPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGI 172
+PP+ + +L++ R S + + F +L L +++KA+ + G P+ IQ I
Sbjct: 9 APPRDSRARLASHTRGRCHSPLKRMHM-TKFTDLNLNPKVLKAIYEAGYETPTPIQAGAI 67
Query: 173 PAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQG 232
P L G+ V+ + +G+G+T ++ LP++ +L R A M PR++VLC T E A Q
Sbjct: 68 PPALEGRDVLGIAQTGTGKTASFTLPMITLLARGRARARM----PRSLVLCPTRELAAQV 123
Query: 233 FHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIR 292
+ +L ++ GGVS K + + + + +LIATP +L H E + ++
Sbjct: 124 AENFDTYTKHLKLTKALLIGGVSFKEQDQLIDKGVDVLIATPGRLLDHFERGKLLLTGVQ 183
Query: 293 YVVLDEADTLFDRGFGPEISKILN 316
+V+DEAD + D GF P+I +I +
Sbjct: 184 IMVVDEADRMLDMGFIPDIERIFS 207
>gi|323493912|ref|ZP_08099029.1| ATP-dependent RNA helicase [Vibrio brasiliensis LMG 20546]
gi|323311853|gb|EGA65000.1| ATP-dependent RNA helicase [Vibrio brasiliensis LMG 20546]
Length = 419
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 93/180 (51%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
+ F LGL + ++ +E +G P+E+Q IP VL GK V+ + +G+G+T A+ LP++
Sbjct: 3 TQFAALGLGSTLLSTLESLGFKQPTEVQTQAIPHVLEGKDVLAGAQTGTGKTAAFGLPIL 62
Query: 201 QMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE 260
Q L + ++ RA+VL T E A Q F + ++ GG S
Sbjct: 63 QKLIDSDTKRDIQSNDVRALVLVPTRELAQQVFDNLTQYAAQTKIKVVAVYGGTSMNVQT 122
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 320
+ +LIATP ++ H+ +N++ Y+VLDEAD + D GF P+I +IL D
Sbjct: 123 RNLDQGCDILIATPGRLIDHMYCKNINLHKTEYLVLDEADRMLDMGFMPDIKRILQRCND 182
>gi|149726038|ref|XP_001502240.1| PREDICTED: probable ATP-dependent RNA helicase DDX41 [Equus
caballus]
Length = 622
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 110/207 (53%), Gaps = 15/207 (7%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239
Query: 200 VQMLRRDEALLPM-KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSS------MENG 252
+ E LP K P +++C + E A Q + ++ + DSS + G
Sbjct: 240 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 299
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
G+S K + + M++ATP ++ ++ + VS D RY+ LDEAD + D GF +I
Sbjct: 300 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 359
Query: 313 KILNPLKDSALKSNGQGFQTILVTAAI 339
I + K GQ QT+L +A +
Sbjct: 360 TIFSYFK-------GQR-QTLLFSATM 378
>gi|301111750|ref|XP_002904954.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
gi|262095284|gb|EEY53336.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
Length = 847
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 114/217 (52%), Gaps = 21/217 (9%)
Query: 131 KSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSG 190
KS+G A V FQ LGL + + V MG VP+ IQ +P VL+GK V + +GSG
Sbjct: 27 KSNGKGAGV-GGFQHLGLSPLVFRGVMAMGYKVPTPIQRKSLPIVLSGKDCVAMARTGSG 85
Query: 191 RTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSME 250
+T A+L+P+V+ L+ + + RA+VL T E A Q AK +S L ++
Sbjct: 86 KTAAFLVPMVEKLKEHSTKIGV-----RAVVLSPTRELAVQTLRFAKQLSKFTSLKMALI 140
Query: 251 NGGVS-SKALEDVSNAPIGMLIATPS---EVLQHIEDRNVSCDDIRYVVLDEADTLFDRG 306
GG + E +++ P +L+ATP +LQ I D N+ + YVV DEAD +F+ G
Sbjct: 141 VGGEGMDQQFEAIASNP-DVLVATPGRLMHLLQEIPDFNLKA--VEYVVFDEADRIFEMG 197
Query: 307 FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEML 343
F ++ +IL + S QT+L +A + + L
Sbjct: 198 FAEQLQEILKNMPTSR--------QTLLFSATLPKAL 226
>gi|14042692|dbj|BAB55355.1| unnamed protein product [Homo sapiens]
Length = 622
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 110/207 (53%), Gaps = 15/207 (7%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239
Query: 200 VQMLRRDEALLPM-KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSS------MENG 252
+ E LP K P +++C + E A Q + ++ + DSS + G
Sbjct: 240 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 299
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
G+S K + + M++ATP ++ ++ + VS D RY+ LDEAD + D GF +I
Sbjct: 300 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 359
Query: 313 KILNPLKDSALKSNGQGFQTILVTAAI 339
I + K GQ QT+L +A +
Sbjct: 360 TIFSYFK-------GQR-QTLLFSATM 378
>gi|157369574|ref|YP_001477563.1| ATP-dependent RNA helicase RhlE [Serratia proteamaculans 568]
gi|157321338|gb|ABV40435.1| DEAD/DEAH box helicase domain protein [Serratia proteamaculans 568]
Length = 456
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 99/178 (55%), Gaps = 3/178 (1%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL AE+++AVE+ G P+ IQ IP VL G+ ++ S+ +G+G+T + LPL+Q
Sbjct: 2 SFETLGLSAEILRAVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 202 ML-RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE 260
+L + D A+ +P+ RA++L T E A Q + S RL S + GGVS
Sbjct: 62 LLSKHDHAVKGRRPV--RALILTPTRELAAQIGENVESYSKYLRLRSLVVFGGVSINPQM 119
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +L+ATP +L R V I +VLDEAD + D GF +I ++L L
Sbjct: 120 MKLRGGVDVLVATPGRLLDLEHQRAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKL 177
>gi|422337325|ref|ZP_16418296.1| ATP-dependent RNA helicase srmB [Aggregatibacter aphrophilus F0387]
gi|353345352|gb|EHB89647.1| ATP-dependent RNA helicase srmB [Aggregatibacter aphrophilus F0387]
Length = 441
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 99/179 (55%), Gaps = 11/179 (6%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++ F + L E++ A++K G P+ IQ +PA ++G+ V+ S+ +G+G+T A+LLP
Sbjct: 4 LTQFADFDLAPELLNAIQKKGYQRPTAIQQETLPAAMDGEDVLGSAPTGTGKTAAFLLPA 63
Query: 200 VQML----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS 255
+Q L RR KP PR ++L T E A Q A+ ++ +L + GGV+
Sbjct: 64 IQHLLDYPRR-------KPGAPRVLILTPTRELAMQVAEQAEELACFTKLSIATITGGVA 116
Query: 256 SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+ ++ N +++ATP +LQ+I++ N C + ++ DEAD + GFG + KI
Sbjct: 117 YQNHGEIFNKNQDIVVATPGRLLQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKI 175
>gi|344265764|ref|XP_003404952.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
DDX41-like, partial [Loxodonta africana]
Length = 613
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 110/207 (53%), Gaps = 15/207 (7%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239
Query: 200 VQMLRRDEALLPM-KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSS------MENG 252
+ E LP K P +++C + E A Q + ++ + DSS + G
Sbjct: 240 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 299
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
G+S K + + M++ATP ++ ++ + VS D RY+ LDEAD + D GF +I
Sbjct: 300 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 359
Query: 313 KILNPLKDSALKSNGQGFQTILVTAAI 339
I + K GQ QT+L +A +
Sbjct: 360 TIFSYFK-------GQ-RQTLLFSATM 378
>gi|129277522|ref|NP_001076071.1| probable ATP-dependent RNA helicase DDX41 [Bos taurus]
gi|126717403|gb|AAI33466.1| DDX41 protein [Bos taurus]
gi|296485512|tpg|DAA27627.1| TPA: DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 [Bos taurus]
Length = 622
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 110/207 (53%), Gaps = 15/207 (7%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239
Query: 200 VQMLRRDEALLPM-KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSS------MENG 252
+ E LP K P +++C + E A Q + ++ + DSS + G
Sbjct: 240 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 299
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
G+S K + + M++ATP ++ ++ + VS D RY+ LDEAD + D GF +I
Sbjct: 300 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 359
Query: 313 KILNPLKDSALKSNGQGFQTILVTAAI 339
I + K GQ QT+L +A +
Sbjct: 360 TIFSYFK-------GQR-QTLLFSATM 378
>gi|440898373|gb|ELR49887.1| Putative ATP-dependent RNA helicase DDX41, partial [Bos grunniens
mutus]
Length = 614
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 110/207 (53%), Gaps = 15/207 (7%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 172 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 231
Query: 200 VQMLRRDEALLPM-KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSS------MENG 252
+ E LP K P +++C + E A Q + ++ + DSS + G
Sbjct: 232 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 291
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
G+S K + + M++ATP ++ ++ + VS D RY+ LDEAD + D GF +I
Sbjct: 292 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 351
Query: 313 KILNPLKDSALKSNGQGFQTILVTAAI 339
I + K GQ QT+L +A +
Sbjct: 352 TIFSYFK-------GQR-QTLLFSATM 370
>gi|95928808|ref|ZP_01311554.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684]
gi|95135153|gb|EAT16806.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684]
Length = 426
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 98/177 (55%), Gaps = 4/177 (2%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++ F +LGL AE+++AV G P+ IQ IPAVLNG ++ ++ +G+G+T + LP+
Sbjct: 1 MTKFNDLGLSAELLRAVADQGYSEPTPIQAQAIPAVLNGGDILAAAQTGTGKTAGFTLPV 60
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSSKA 258
+Q L +P+ RA+VL T E A Q G +A + + L S++ GGV
Sbjct: 61 LQRLSDTPVSSGRRPV--RALVLTPTRELAAQVGASVADYGKYLP-LRSAIVFGGVKINP 117
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
+ + +L+ATP +L H+ + V + ++LDEAD + D GF +I K+L
Sbjct: 118 QISMLRKGVDILVATPGRLLDHVSQKTVDLSKVEILILDEADRMLDMGFIRDIRKVL 174
>gi|73953218|ref|XP_536417.2| PREDICTED: probable ATP-dependent RNA helicase DDX41 isoform 1
[Canis lupus familiaris]
Length = 622
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 110/207 (53%), Gaps = 15/207 (7%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239
Query: 200 VQMLRRDEALLPM-KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSS------MENG 252
+ E LP K P +++C + E A Q + ++ + DSS + G
Sbjct: 240 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 299
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
G+S K + + M++ATP ++ ++ + VS D RY+ LDEAD + D GF +I
Sbjct: 300 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 359
Query: 313 KILNPLKDSALKSNGQGFQTILVTAAI 339
I + K GQ QT+L +A +
Sbjct: 360 TIFSYFK-------GQR-QTLLFSATM 378
>gi|395837035|ref|XP_003791451.1| PREDICTED: probable ATP-dependent RNA helicase DDX41-like [Otolemur
garnettii]
Length = 621
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 110/207 (53%), Gaps = 15/207 (7%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 179 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 238
Query: 200 VQMLRRDEALLPM-KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSS------MENG 252
+ E LP K P +++C + E A Q + ++ + DSS + G
Sbjct: 239 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 298
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
G+S K + + M++ATP ++ ++ + VS D RY+ LDEAD + D GF +I
Sbjct: 299 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 358
Query: 313 KILNPLKDSALKSNGQGFQTILVTAAI 339
I + K GQ QT+L +A +
Sbjct: 359 TIFSYFK-------GQ-RQTLLFSATM 377
>gi|416033315|ref|ZP_11573033.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans serotype a str. H5P1]
gi|347999150|gb|EGY40019.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans serotype a str. H5P1]
Length = 443
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 95/176 (53%), Gaps = 11/176 (6%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F + L E++ A++K G P+ IQ IPA + G V+ S+ +G+G+T A+LLP +Q
Sbjct: 7 FADFDLAPELLNALQKKGYQRPTAIQQETIPAAMGGGDVLGSAPTGTGKTAAFLLPAIQH 66
Query: 203 L----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
L RR KP PR +VL T E A Q AK ++ +L + GGV+ +
Sbjct: 67 LLDYPRR-------KPGAPRVLVLTPTRELAMQVAEQAKELACFTKLSIATITGGVAYQN 119
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
++ N +++ATP +LQ+I++ N C + ++ DEAD + GFG + KI
Sbjct: 120 HGEIFNKNQDIVVATPGRLLQYIKEENFDCRTVEILIFDEADRMLQMGFGQDAEKI 175
>gi|296193469|ref|XP_002744529.1| PREDICTED: probable ATP-dependent RNA helicase DDX41 [Callithrix
jacchus]
Length = 622
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 110/207 (53%), Gaps = 15/207 (7%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239
Query: 200 VQMLRRDEALLPM-KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSS------MENG 252
+ E LP K P +++C + E A Q + ++ + DSS + G
Sbjct: 240 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 299
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
G+S K + + M++ATP ++ ++ + VS D RY+ LDEAD + D GF +I
Sbjct: 300 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 359
Query: 313 KILNPLKDSALKSNGQGFQTILVTAAI 339
I + K GQ QT+L +A +
Sbjct: 360 TIFSYFK-------GQR-QTLLFSATM 378
>gi|312379831|gb|EFR25992.1| hypothetical protein AND_08228 [Anopheles darlingi]
Length = 803
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 107/201 (53%), Gaps = 11/201 (5%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
FQ +GL A ++K + KMG VP+ IQ IP +++G+ VV + +GSG+T ++L+P+ +
Sbjct: 39 FQAMGLSAPVLKGILKMGYKVPTPIQRKTIPIIMDGRDVVAMAKTGSGKTGSFLIPMFEK 98
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDV 262
LR+ EA RA++L T E A Q F K + L + + GG S A
Sbjct: 99 LRQREA---KAGGGARALILSPTRELAIQTFRFIKQLGRFMDLKTILVLGGDSMDAQFAA 155
Query: 263 SNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSA 322
+ +++ATP L + ++ ++Y VLDEAD LF+ GFG ++S L L ++
Sbjct: 156 VHTLPDIIVATPGRFLHLCVEMDLKLGSVQYCVLDEADRLFEMGFGEQLSDTLKRLPEAR 215
Query: 323 LKSNGQGFQTILVTAAIAEML 343
Q +L +A + +M+
Sbjct: 216 --------QMVLFSATLPKMM 228
>gi|294083671|ref|YP_003550428.1| Superfamily II DNA and RNA helicase [Candidatus Puniceispirillum
marinum IMCC1322]
gi|292663243|gb|ADE38344.1| Superfamily II DNA and RNA helicase [Candidatus Puniceispirillum
marinum IMCC1322]
Length = 464
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 102/177 (57%), Gaps = 6/177 (3%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F +LGL E+ +AV ++G P+ IQ IP +L G+ ++ S+ +G+G+T ++ LP++ +
Sbjct: 3 FSDLGLSDELSQAVAELGYESPTPIQEKSIPIILMGRDILGSAQTGTGKTASFTLPMIDI 62
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSSKALED 261
L A K PR+++L T E A Q KF +H +L+ ++ GGVS
Sbjct: 63 LASGRA----KARMPRSLILAPTRELAAQVAESFEKFSTHH-KLNMALLIGGVSFSDQNT 117
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ + +LIATP +L H E V +D++ +V+DEAD + D GF P++ +I++ L
Sbjct: 118 ALDKGVDVLIATPGRLLDHFERGKVMLNDVKVLVIDEADRMLDMGFIPDVERIVSLL 174
>gi|30584005|gb|AAP36251.1| Homo sapiens DEAD-box protein abstrakt [synthetic construct]
gi|61369941|gb|AAX43416.1| DEAD box polypeptide 41 [synthetic construct]
gi|61369946|gb|AAX43417.1| DEAD box polypeptide 41 [synthetic construct]
Length = 623
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 110/207 (53%), Gaps = 15/207 (7%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239
Query: 200 VQMLRRDEALLPM-KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSS------MENG 252
+ E LP K P +++C + E A Q + ++ + DSS + G
Sbjct: 240 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 299
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
G+S K + + M++ATP ++ ++ + VS D RY+ LDEAD + D GF +I
Sbjct: 300 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 359
Query: 313 KILNPLKDSALKSNGQGFQTILVTAAI 339
I + K GQ QT+L +A +
Sbjct: 360 TIFSYFK-------GQR-QTLLFSATM 378
>gi|6118555|gb|AAF04150.1|AF195417_1 DEAD-box protein abstrakt [Homo sapiens]
Length = 621
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 110/207 (53%), Gaps = 15/207 (7%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 179 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 238
Query: 200 VQMLRRDEALLPM-KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSS------MENG 252
+ E LP K P +++C + E A Q + ++ + DSS + G
Sbjct: 239 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 298
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
G+S K + + M++ATP ++ ++ + VS D RY+ LDEAD + D GF +I
Sbjct: 299 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 358
Query: 313 KILNPLKDSALKSNGQGFQTILVTAAI 339
I + K GQ QT+L +A +
Sbjct: 359 TIFSYFK-------GQR-QTLLFSATM 377
>gi|402873575|ref|XP_003900647.1| PREDICTED: probable ATP-dependent RNA helicase DDX41 [Papio anubis]
gi|355691902|gb|EHH27087.1| hypothetical protein EGK_17201 [Macaca mulatta]
gi|387542592|gb|AFJ71923.1| putative ATP-dependent RNA helicase DDX41 [Macaca mulatta]
Length = 622
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 110/207 (53%), Gaps = 15/207 (7%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239
Query: 200 VQMLRRDEALLPM-KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSS------MENG 252
+ E LP K P +++C + E A Q + ++ + DSS + G
Sbjct: 240 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 299
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
G+S K + + M++ATP ++ ++ + VS D RY+ LDEAD + D GF +I
Sbjct: 300 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 359
Query: 313 KILNPLKDSALKSNGQGFQTILVTAAI 339
I + K GQ QT+L +A +
Sbjct: 360 TIFSYFK-------GQR-QTLLFSATM 378
>gi|410949088|ref|XP_003981256.1| PREDICTED: probable ATP-dependent RNA helicase DDX41 [Felis catus]
Length = 622
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 110/207 (53%), Gaps = 15/207 (7%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239
Query: 200 VQMLRRDEALLPM-KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSS------MENG 252
+ E LP K P +++C + E A Q + ++ + DSS + G
Sbjct: 240 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 299
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
G+S K + + M++ATP ++ ++ + VS D RY+ LDEAD + D GF +I
Sbjct: 300 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 359
Query: 313 KILNPLKDSALKSNGQGFQTILVTAAI 339
I + K GQ QT+L +A +
Sbjct: 360 TIFSYFK-------GQR-QTLLFSATM 378
>gi|355683291|gb|AER97077.1| DEAD box polypeptide 41 [Mustela putorius furo]
Length = 621
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 110/207 (53%), Gaps = 15/207 (7%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239
Query: 200 VQMLRRDEALLPM-KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSS------MENG 252
+ E LP K P +++C + E A Q + ++ + DSS + G
Sbjct: 240 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 299
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
G+S K + + M++ATP ++ ++ + VS D RY+ LDEAD + D GF +I
Sbjct: 300 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 359
Query: 313 KILNPLKDSALKSNGQGFQTILVTAAI 339
I + K GQ QT+L +A +
Sbjct: 360 TIFSYFK-------GQ-RQTLLFSATM 378
>gi|357156184|ref|XP_003577369.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 50-like isoform 2
[Brachypodium distachyon]
Length = 662
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 94/170 (55%), Gaps = 4/170 (2%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+E+G E++ A+ G PS IQ + VL G+S +++ SGSG+TLAYL P++Q
Sbjct: 262 SFKEIGCGDEILGALRSFGFPQPSHIQAMAYGPVLEGRSCIIADQSGSGKTLAYLCPIIQ 321
Query: 202 MLRRDEALLPMK--PMHPRAIVLCTTEESADQGFHMAKFISHC-ARLDSSMENGGVSSKA 258
LR++EA+ K P +PR I+L T E + Q + IS A S + GG K
Sbjct: 322 NLRKEEAMGVHKSSPRNPRVIILTPTAELSSQVLQNCRSISKSGAPFRSMVATGGFRQKT 381
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF-DRGF 307
+ + +LIATP L +++ V +++R VV DE D LF + GF
Sbjct: 382 QLESLEQELDVLIATPGRFLYLLQEGFVQLNNLRCVVFDEVDILFGEEGF 431
>gi|416074740|ref|ZP_11584669.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans serotype b str. SCC1398]
gi|444337976|ref|ZP_21151886.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans serotype b str. SCC4092]
gi|348006743|gb|EGY47138.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans serotype b str. SCC1398]
gi|443545920|gb|ELT55650.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans serotype b str. SCC4092]
Length = 443
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 95/176 (53%), Gaps = 11/176 (6%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F + L E++ A++K G P+ IQ IPA + G V+ S+ +G+G+T A+LLP +Q
Sbjct: 7 FADFDLAPELLNALQKKGYQRPTAIQQETIPAAMEGGDVLGSAPTGTGKTAAFLLPAIQH 66
Query: 203 L----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
L RR KP PR +VL T E A Q AK ++ +L + GGV+ +
Sbjct: 67 LLDYPRR-------KPGAPRVLVLTPTRELAMQVAEQAKELACFTKLSIATITGGVAYQN 119
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
++ N +++ATP +LQ+I++ N C + ++ DEAD + GFG + KI
Sbjct: 120 HGEIFNKNQDIVVATPGRLLQYIKEENFDCRTVEILIFDEADRMLQMGFGQDAEKI 175
>gi|444375654|ref|ZP_21174907.1| ATP-dependent RNA helicase RhlE [Enterovibrio sp. AK16]
gi|443680157|gb|ELT86804.1| ATP-dependent RNA helicase RhlE [Enterovibrio sp. AK16]
Length = 508
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/179 (36%), Positives = 98/179 (54%), Gaps = 7/179 (3%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
F +LGL A +++A+++ G PS IQ IPAVL GK V+ ++ +G+G+T ++LP+++
Sbjct: 2 GFTDLGLSAPILRAIQEKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFVLPILE 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L +P H RA++L T E A Q A S RL SS+ GGV K
Sbjct: 62 RLSEGSR---TRPNHIRALILTPTRELAAQIHENAVVYSRHLRLRSSVVFGGV--KINPQ 116
Query: 262 VSNAPIG--MLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ N G +L+ATP +L + V + +VLDEAD + D GF +I KIL+ L
Sbjct: 117 MMNLRKGTDILVATPGRLLDLYQQNAVKFSQLEVLVLDEADRMLDMGFFRDIKKILDLL 175
>gi|343961729|dbj|BAK62454.1| probable ATP-dependent RNA helicase DDX41 [Pan troglodytes]
Length = 622
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 110/207 (53%), Gaps = 15/207 (7%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239
Query: 200 VQMLRRDEALLPM-KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSS------MENG 252
+ E LP K P +++C + E A Q + ++ + DSS + G
Sbjct: 240 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 299
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
G+S K + + M++ATP ++ ++ + VS D RY+ LDEAD + D GF +I
Sbjct: 300 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 359
Query: 313 KILNPLKDSALKSNGQGFQTILVTAAI 339
I + K GQ QT+L +A +
Sbjct: 360 TIFSYFK-------GQ-RQTLLFSATM 378
>gi|339482299|ref|YP_004694085.1| DEAD/DEAH box helicase domain-containing protein [Nitrosomonas sp.
Is79A3]
gi|338804444|gb|AEJ00686.1| DEAD/DEAH box helicase domain protein [Nitrosomonas sp. Is79A3]
Length = 493
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 99/180 (55%), Gaps = 7/180 (3%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F++LGL ++++A+ G P+ IQ IP +L+G V+ + +G+G+T ++ LP M
Sbjct: 3 FEQLGLSTDLMRAISDQGYTKPTPIQEQAIPIILDGNDVMGGAQTGTGKTASFTLP---M 59
Query: 203 LRRDE--ALLPMKPM-HP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
LRR E A M P HP RA++L T E A Q K L S++ GGV+ A
Sbjct: 60 LRRLEIYANTSMSPAKHPIRALILVPTRELAVQVHESVKTYGKYLPLRSTVIYGGVNIDA 119
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ + I +L+ATP +L H++ + + I +LDEAD + D GF P+I +I+ L
Sbjct: 120 QINAVRSGIEILVATPGRLLDHLQQKTLGLSKIEIFILDEADRMLDMGFMPDIKQIIQLL 179
>gi|344939864|ref|ZP_08779152.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
SV96]
gi|344261056|gb|EGW21327.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
SV96]
Length = 441
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 101/179 (56%), Gaps = 11/179 (6%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF +LGL E++KAV G P+ +Q IP +L GK V+ + +G+G+T ++ LPL+Q
Sbjct: 2 SFAQLGLADELLKAVADQGYVTPTPVQQKAIPLILEGKDVLAGAQTGTGKTASFTLPLLQ 61
Query: 202 MLRRDEALLP-MKPMHPRAIVLCTTEESADQGFHMAK-FISHCARLDSSMENG---GVSS 256
L + P KP RA++L T E A Q + K + +H ++ G G+ +
Sbjct: 62 RLAENHD--PHQKPRRVRALILVPTRELAAQVYESVKTYGAHLPFHAEAVVGGASIGIQT 119
Query: 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
+ L + +++ATP ++ H++ RN++ ++ +VLDEAD + D GF P+I +++
Sbjct: 120 RQLRRGCD----IVVATPGRLIDHVQQRNINLSNVEVLVLDEADRMLDMGFLPDIKQLM 174
>gi|302758194|ref|XP_002962520.1| hypothetical protein SELMODRAFT_438217 [Selaginella moellendorffii]
gi|300169381|gb|EFJ35983.1| hypothetical protein SELMODRAFT_438217 [Selaginella moellendorffii]
Length = 821
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 72/205 (35%), Positives = 110/205 (53%), Gaps = 16/205 (7%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F+ LGL + +A+ K G VP+ IQ +P +L G VV + +GSG+T A+L+P+++
Sbjct: 55 FESLGLSPSIYQAIRKKGYSVPTPIQRKTLPLILAGNDVVAMARTGSGKTAAFLIPMLEK 114
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA-LED 261
LR A P KP RA++L T E A Q F K + L ++ GG S + E
Sbjct: 115 LR---AHSP-KP-GARALILSPTRELALQTFKFCKELGRNTDLRITVLVGGDSMETQFEQ 169
Query: 262 VSNAPIGMLIATPSEVLQHI-EDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 320
+S P +LIATP ++ H+ E +S + YVV DEAD LF+ GF ++ +IL L +
Sbjct: 170 LSKNP-DILIATPGRLMHHLSEVEGMSLKSVEYVVFDEADRLFEMGFAEQLRQILTQLHE 228
Query: 321 SALKSNGQGFQTILVTAAIAEMLGE 345
QT+L +A + +L +
Sbjct: 229 LR--------QTLLFSATLPRLLAD 245
>gi|281342094|gb|EFB17678.1| hypothetical protein PANDA_018093 [Ailuropoda melanoleuca]
Length = 613
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 110/207 (53%), Gaps = 15/207 (7%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 171 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 230
Query: 200 VQMLRRDEALLPM-KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSS------MENG 252
+ E LP K P +++C + E A Q + ++ + DSS + G
Sbjct: 231 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 290
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
G+S K + + M++ATP ++ ++ + VS D RY+ LDEAD + D GF +I
Sbjct: 291 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 350
Query: 313 KILNPLKDSALKSNGQGFQTILVTAAI 339
I + K GQ QT+L +A +
Sbjct: 351 TIFSYFK-------GQR-QTLLFSATM 369
>gi|109079956|ref|XP_001092587.1| PREDICTED: probable ATP-dependent RNA helicase DDX41 isoform 3
[Macaca mulatta]
Length = 622
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 110/207 (53%), Gaps = 15/207 (7%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239
Query: 200 VQMLRRDEALLPM-KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSS------MENG 252
+ E LP K P +++C + E A Q + ++ + DSS + G
Sbjct: 240 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 299
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
G+S K + + M++ATP ++ ++ + VS D RY+ LDEAD + D GF +I
Sbjct: 300 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 359
Query: 313 KILNPLKDSALKSNGQGFQTILVTAAI 339
I + K GQ QT+L +A +
Sbjct: 360 TIFSYFK-------GQR-QTLLFSATM 378
>gi|392546250|ref|ZP_10293387.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas rubra ATCC
29570]
Length = 410
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 98/182 (53%), Gaps = 11/182 (6%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F E L ++ A++KMG + IQ + IP L G+ ++ S+ +G+G+T A+L+P +Q
Sbjct: 3 FTEFDLDGTLLTAIKKMGFEQATSIQQLAIPEALMGRDILASAPTGTGKTAAFLIPAIQY 62
Query: 203 L----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
L RRD P R +++ T E A Q F + ++ L + GG++ +
Sbjct: 63 LMDFPRRD-------PGFARVLIMTPTRELAYQVFEQCEALAAGTHLKIGVVTGGINYGS 115
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+++ +LIATP +++++E N D++ ++LDEAD + D GF E+ KI N
Sbjct: 116 HKEIFEKNNDILIATPGRLMEYLETENFHADNVELLILDEADRMLDLGFKKEMLKICNEA 175
Query: 319 KD 320
K+
Sbjct: 176 KN 177
>gi|395861175|ref|XP_003802869.1| PREDICTED: probable ATP-dependent RNA helicase DDX41 [Otolemur
garnettii]
Length = 622
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 110/207 (53%), Gaps = 15/207 (7%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239
Query: 200 VQMLRRDEALLPM-KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSS------MENG 252
+ E LP K P +++C + E A Q + ++ + DSS + G
Sbjct: 240 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 299
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
G+S K + + M++ATP ++ ++ + VS D RY+ LDEAD + D GF +I
Sbjct: 300 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 359
Query: 313 KILNPLKDSALKSNGQGFQTILVTAAI 339
I + K GQ QT+L +A +
Sbjct: 360 TIFSYFK-------GQ-RQTLLFSATM 378
>gi|344299490|gb|EGW29843.1| hypothetical protein SPAPADRAFT_157925 [Spathaspora passalidarum
NRRL Y-27907]
Length = 553
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 112/195 (57%), Gaps = 12/195 (6%)
Query: 127 SEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSG 186
++ ++SS + ++V ++FQ L L ++K + ++G PS IQ IP L GK +V +
Sbjct: 26 ADEQESSAAKSQVHTTFQTLQLSRPVLKGLAQLGYVKPSPIQSASIPIALLGKDIVAGAQ 85
Query: 187 SGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESA----DQGFHMAKFISHC 242
+GSG+T AY++P+++ L P K R IVL T E A D G +++FI++
Sbjct: 86 TGSGKTAAYMIPIIERL----LYKPSKVPSTRVIVLTPTRELAIQVCDVGKKLSQFINN- 140
Query: 243 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR-NVSCDDIRYVVLDEADT 301
L+ + GG++ + E + ++IATP ++ HI + + S D++ +V+DEAD
Sbjct: 141 --LNFGLAVGGLNLRQQELQLKSRPDIVIATPGRLIDHIRNSPSFSIDNLEVLVIDEADR 198
Query: 302 LFDRGFGPEISKILN 316
+ D GF E+++IL+
Sbjct: 199 MLDEGFQAELTEILS 213
>gi|261866893|ref|YP_003254815.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|365966708|ref|YP_004948270.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans ANH9381]
gi|416090463|ref|ZP_11588124.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans serotype b str. I23C]
gi|444349527|ref|ZP_21156943.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans serotype b str. S23A]
gi|261412225|gb|ACX81596.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|348009152|gb|EGY49333.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans serotype b str. I23C]
gi|365745621|gb|AEW76526.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans ANH9381]
gi|443544419|gb|ELT54409.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans serotype b str. S23A]
Length = 443
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 95/176 (53%), Gaps = 11/176 (6%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F + L E++ A++K G P+ IQ IPA + G V+ S+ +G+G+T A+LLP +Q
Sbjct: 7 FADFDLAPELLNALQKKGYQRPTAIQQETIPAAMEGGDVLGSAPTGTGKTAAFLLPAIQH 66
Query: 203 L----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
L RR KP PR +VL T E A Q AK ++ +L + GGV+ +
Sbjct: 67 LLDYPRR-------KPGAPRVLVLTPTRELAMQVAEQAKELACFTKLSIATITGGVAYQN 119
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
++ N +++ATP +LQ+I++ N C + ++ DEAD + GFG + KI
Sbjct: 120 HGEIFNKNQDIVVATPGRLLQYIKEENFDCRTVEILIFDEADRMLQMGFGQDAEKI 175
>gi|152981130|ref|YP_001352218.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
gi|151281207|gb|ABR89617.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
Length = 513
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 98/186 (52%), Gaps = 1/186 (0%)
Query: 132 SSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGR 191
++ +A F++ GL E+++A+ G P+ IQ IP VL G V+ ++ +G+G+
Sbjct: 27 AAAVDAHPAVRFEDFGLAPEILRALSDQGYVHPTPIQAEAIPVVLQGIDVMGAAQTGTGK 86
Query: 192 TLAYLLPLVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSME 250
T + LP++Q+L HP RA++L T E ADQ K S L S +
Sbjct: 87 TAGFSLPIIQLLMAHANSSASPARHPVRALILTPTRELADQVADNVKAYSRHTPLRSVVV 146
Query: 251 NGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPE 310
GGV + + ++IATP +L HI+ + ++ + +V+DEAD + D GF P+
Sbjct: 147 FGGVDMAPQTAALRSGVEIVIATPGRLLDHIQQKTLNLSQTQILVMDEADRMLDMGFLPD 206
Query: 311 ISKILN 316
+ +I+N
Sbjct: 207 LQRIIN 212
>gi|416108042|ref|ZP_11590880.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
gi|444345419|ref|ZP_21153437.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans serotype c str. AAS4A]
gi|348004666|gb|EGY45164.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
gi|443542946|gb|ELT53226.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans serotype c str. AAS4A]
Length = 443
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 95/176 (53%), Gaps = 11/176 (6%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F + L E++ A++K G P+ IQ IPA + G V+ S+ +G+G+T A+LLP +Q
Sbjct: 7 FADFDLAPELLNALQKKGYQRPTAIQQETIPAAMEGGDVLGSAPTGTGKTAAFLLPAIQH 66
Query: 203 L----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
L RR KP PR +VL T E A Q AK ++ +L + GGV+ +
Sbjct: 67 LLDYPRR-------KPGAPRVLVLTPTRELAMQVAEQAKELACFTKLSIATITGGVAYQN 119
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
++ N +++ATP +LQ+I++ N C + ++ DEAD + GFG + KI
Sbjct: 120 HGEIFNKNQDIVVATPGRLLQYIKEENFDCRTVEILIFDEADRMLQMGFGQDAEKI 175
>gi|418464061|ref|ZP_13035003.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans RhAA1]
gi|359757402|gb|EHK91556.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans RhAA1]
Length = 443
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 95/176 (53%), Gaps = 11/176 (6%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F + L E++ A++K G P+ IQ IPA + G V+ S+ +G+G+T A+LLP +Q
Sbjct: 7 FADFDLAPELLNALQKKGYQRPTAIQQETIPAAMEGGDVLGSAPTGTGKTAAFLLPAIQH 66
Query: 203 L----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
L RR KP PR +VL T E A Q AK ++ +L + GGV+ +
Sbjct: 67 LLDYPRR-------KPGAPRVLVLTPTRELAMQVAEQAKELACFTKLSIATITGGVAYQN 119
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
++ N +++ATP +LQ+I++ N C + ++ DEAD + GFG + KI
Sbjct: 120 HGEIFNKNQDIVVATPGRLLQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKI 175
>gi|357156181|ref|XP_003577368.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 50-like isoform 1
[Brachypodium distachyon]
Length = 651
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 94/170 (55%), Gaps = 4/170 (2%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+E+G E++ A+ G PS IQ + VL G+S +++ SGSG+TLAYL P++Q
Sbjct: 251 SFKEIGCGDEILGALRSFGFPQPSHIQAMAYGPVLEGRSCIIADQSGSGKTLAYLCPIIQ 310
Query: 202 MLRRDEALLPMK--PMHPRAIVLCTTEESADQGFHMAKFISHC-ARLDSSMENGGVSSKA 258
LR++EA+ K P +PR I+L T E + Q + IS A S + GG K
Sbjct: 311 NLRKEEAMGVHKSSPRNPRVIILTPTAELSSQVLQNCRSISKSGAPFRSMVATGGFRQKT 370
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF-DRGF 307
+ + +LIATP L +++ V +++R VV DE D LF + GF
Sbjct: 371 QLESLEQELDVLIATPGRFLYLLQEGFVQLNNLRCVVFDEVDILFGEEGF 420
>gi|319944884|ref|ZP_08019146.1| ATP-dependent RNA helicase RhlE [Lautropia mirabilis ATCC 51599]
gi|319741454|gb|EFV93879.1| ATP-dependent RNA helicase RhlE [Lautropia mirabilis ATCC 51599]
Length = 489
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 93/178 (52%), Gaps = 1/178 (0%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
+SF LGL +++A+ +G P+ IQ IP VL G+ ++ ++ +G+G+T + LP++
Sbjct: 13 TSFSGLGLADPLLRALADVGYTNPTPIQAKAIPVVLTGRDLLAAAQTGTGKTAGFTLPIL 72
Query: 201 QMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE 260
Q L D + KP PR ++L T E Q K + R+ S + GGVS
Sbjct: 73 QRLL-DNPMQTRKPGRPRCLILTPTRELTAQVEESVKAYAKYTRIRSVLIFGGVSINPQI 131
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
P+ +L+ATP +L H++ V + VLDEAD + D GF +I +++ L
Sbjct: 132 QALRQPVDILVATPGRLLDHVQQGTVDLSGVEIFVLDEADRMLDMGFIHDIRRVIAKL 189
>gi|421486785|ref|ZP_15934320.1| ATP-dependent RNA helicase [Achromobacter piechaudii HLE]
gi|400194954|gb|EJO27955.1| ATP-dependent RNA helicase [Achromobacter piechaudii HLE]
Length = 497
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 98/178 (55%), Gaps = 1/178 (0%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F + GL +++++ + G +P+ IQ IP V+ G+ V+ ++ +G+G+T A+ LP++
Sbjct: 18 TFADFGLHPLLLQSIAETGYTIPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTLPILH 77
Query: 202 MLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE 260
L HP RA++L T E ADQ + K S L S++ GGV +
Sbjct: 78 RLMPLANASASPARHPVRALILTPTRELADQVYESVKRYSKQTPLRSAVVFGGVDIGPQK 137
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +L+ATP +L H+E +NV+ + +VLDEAD + D GF P++ +I+ L
Sbjct: 138 EALRRGCEVLVATPGRLLDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLERIIRLL 195
>gi|386334504|ref|YP_006030675.1| ATP-dependent rna helicase protein [Ralstonia solanacearum Po82]
gi|334196954|gb|AEG70139.1| ATP-dependent rna helicase protein [Ralstonia solanacearum Po82]
Length = 674
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 102/198 (51%), Gaps = 4/198 (2%)
Query: 125 IASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLS 184
+A ER + + + SF ELGL ++++AV ++G P+ IQ IPA+L G ++
Sbjct: 112 LAHERMRGTRRSNRFSMSFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAG 171
Query: 185 SGSGSGRTLAYLLPLVQML---RRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFIS 240
+ +G+G+T + LPL+ L + ++ P +P RA+VL T E A Q +
Sbjct: 172 AQTGTGKTAGFTLPLLHRLSAAQPNKVHTPHGMRYPIRALVLTPTRELAAQVEESVRAYG 231
Query: 241 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 300
L S + GGV D + +++ATP +L H+ R + I +VLDEAD
Sbjct: 232 KYLPLKSMVMFGGVGINPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEAD 291
Query: 301 TLFDRGFGPEISKILNPL 318
+ D GF +I KILN L
Sbjct: 292 RMLDMGFIHDIRKILNIL 309
>gi|417411966|gb|JAA52400.1| Putative atp-dependent rna helicase, partial [Desmodus rotundus]
Length = 620
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 110/207 (53%), Gaps = 15/207 (7%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 178 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 237
Query: 200 VQMLRRDEALLPM-KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSS------MENG 252
+ E LP K P +++C + E A Q + ++ + DSS + G
Sbjct: 238 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 297
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
G+S K + + M++ATP ++ ++ + VS D RY+ LDEAD + D GF +I
Sbjct: 298 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 357
Query: 313 KILNPLKDSALKSNGQGFQTILVTAAI 339
I + K GQ QT+L +A +
Sbjct: 358 TIFSYFK-------GQR-QTLLFSATM 376
>gi|294875674|ref|XP_002767430.1| ATP-dependent RNA helicase dbp10, putative [Perkinsus marinus ATCC
50983]
gi|239868997|gb|EER00148.1| ATP-dependent RNA helicase dbp10, putative [Perkinsus marinus ATCC
50983]
Length = 952
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 97/174 (55%), Gaps = 5/174 (2%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+FQ +GL + KA++KMG P+ IQ IP +L G VV + +GSG+T A+++P++Q
Sbjct: 24 AFQTMGLSDPLFKAIQKMGYNQPTPIQRKAIPVILGGSDVVAMARTGSGKTAAFVIPMIQ 83
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L+ ++ RA++L T E A Q + + + L + GG S ++ D
Sbjct: 84 TLKGHSEVVG-----ARAVILSPTRELAMQTIKVTRMLGKFTDLRLCLIVGGHSMESQFD 138
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
++ +LI TP ++ H+ + ++S ++Y+V DEAD LF+ GF ++ IL
Sbjct: 139 RLSSNPDVLICTPGRLVHHMVEADLSLQRVQYIVFDEADRLFEMGFSDDMQTIL 192
>gi|381150962|ref|ZP_09862831.1| DNA/RNA helicase, superfamily II [Methylomicrobium album BG8]
gi|380882934|gb|EIC28811.1| DNA/RNA helicase, superfamily II [Methylomicrobium album BG8]
Length = 425
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 94/177 (53%), Gaps = 1/177 (0%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF +LGL A ++KAV + G P+ IQ IP +L+G+ V+ + +G+G+T ++ LPL+Q
Sbjct: 2 SFAQLGLAAPLLKAVAEQGYVTPTPIQQQTIPLILDGRDVLAGAQTGTGKTASFTLPLLQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L P KP RA++L T E A Q + L + + GGVS
Sbjct: 62 RLAESND-KPQKPRKIRALILAPTRELAAQVHDSVRAYGKHLPLFAEVVVGGVSINGQIR 120
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+++ATP +L H+ +N+ + +VLDEAD + D GF P+I KI+ L
Sbjct: 121 SLQRGCDIVVATPGRLLDHLLQKNIELSHLEILVLDEADRMLDMGFLPDIRKIIGHL 177
>gi|91794376|ref|YP_564027.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
OS217]
gi|91716378|gb|ABE56304.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
OS217]
Length = 496
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 94/174 (54%), Gaps = 3/174 (1%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL A ++KA+ K G P+ IQ IPAVL GK V+ ++ +G+G+T + LPL++
Sbjct: 2 SFSSLGLSAALLKAIAKQGYDTPTAIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLE 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
+L + + P + RA+VL T E A Q + H L S++ GGVS
Sbjct: 62 ILSKGK---PAQRGQVRALVLTPTRELAAQVADSVETYGHNLPLKSAVVFGGVSIVPQIA 118
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
+ +L+ATP +L R +S + +VLDEAD + D GF +I K+L
Sbjct: 119 ALKQGVDILVATPGRLLDLCNQRALSFSTLEILVLDEADRMLDMGFIRDIRKVL 172
>gi|71145379|gb|AAZ25852.1| ATP-dependent RNA helicase SrmB [Colwellia psychrerythraea 34H]
Length = 430
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 100/174 (57%), Gaps = 5/174 (2%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F++ L +E++ ++ K+G P+ IQ + IP + GK V+ S+ +G+G+T A+LLP+ Q
Sbjct: 15 FEQFDLDSELLASINKIGYTKPTSIQELVIPQAMVGKDVLASAPTGTGKTAAFLLPIAQH 74
Query: 203 LRRDEALLP-MKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L P KP PR ++L T E A Q ++ ++ ++ + + GGV+ + D
Sbjct: 75 LLD----YPRTKPGFPRVLILTPTRELAIQIGEDSEQLTELTKIKTGVITGGVNYGSHAD 130
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
+ + +L+ATP +L++IE+ +I +VLDEAD + D GF I++I+
Sbjct: 131 ILTSTTDILVATPGRLLEYIENEQFDAREIEILVLDEADRMLDLGFSETINRIV 184
>gi|209363862|ref|YP_001424084.2| ATP-dependent RNA helicase [Coxiella burnetii Dugway 5J108-111]
gi|212212853|ref|YP_002303789.1| ATP-dependent RNA helicase [Coxiella burnetii CbuG_Q212]
gi|212219099|ref|YP_002305886.1| ATP-dependent RNA helicase [Coxiella burnetii CbuK_Q154]
gi|215919015|ref|NP_819700.2| ATP-dependent RNA helicase rhlE [Coxiella burnetii RSA 493]
gi|206583900|gb|AAO90214.2| ATP-dependent RNA helicase [Coxiella burnetii RSA 493]
gi|207081795|gb|ABS77088.2| ATP-dependent RNA helicase [Coxiella burnetii Dugway 5J108-111]
gi|212011263|gb|ACJ18644.1| ATP-dependent RNA helicase [Coxiella burnetii CbuG_Q212]
gi|212013361|gb|ACJ20741.1| ATP-dependent RNA helicase [Coxiella burnetii CbuK_Q154]
Length = 420
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 126/239 (52%), Gaps = 18/239 (7%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL AE+++A+ + G P+ +Q IP +L + V++++ +G+G+T + LPL+Q
Sbjct: 11 SFEVLGLSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQ 70
Query: 202 ML--RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
L R KP+ RA++L T E A Q F + L +++ +GGVS K
Sbjct: 71 RLFVSRPPLQRSAKPV-IRALILTPTRELAVQVFECVRAYGKYLPLKATVVHGGVSIKPQ 129
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319
+ + +L+ATP +L + ++ + + VLDEAD + D GF P+I +IL L
Sbjct: 130 INHLRRGVDILVATPGRLLDLVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLLP 189
Query: 320 DSALKSNGQGFQTILVTAA----IAEMLGEQLSS--LMECLERDN-AGKVTAMLLEMDQ 371
+S Q +L +A I E+ + L S L+E R+ A ++T ++ +D+
Sbjct: 190 ESR--------QNLLFSATFSKEIKELTDKLLHSPALIEVARRNTAAARITHVVHPVDR 240
>gi|255261571|ref|ZP_05340913.1| putative ATP-dependent RNA helicase RhlE [Thalassiobium sp. R2A62]
gi|255103906|gb|EET46580.1| putative ATP-dependent RNA helicase RhlE [Thalassiobium sp. R2A62]
Length = 499
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 96/177 (54%), Gaps = 4/177 (2%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++ F +L L +++ AVE G P+ IQ IP L G+ V+ + +G+G+T ++ LP+
Sbjct: 1 MTKFSDLNLDRKVLSAVEDAGYTEPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPM 60
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
+ ML+R A M PR++VL T E A Q + +L ++ GGVS K
Sbjct: 61 ISMLKRGRARARM----PRSLVLAPTRELAAQVAENFDVYAKNTKLTKALLIGGVSFKEQ 116
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ + + + +LIATP +L H E + ++ +V+DEAD + D GF P+I +I
Sbjct: 117 DQLIDRGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFG 173
>gi|161407972|ref|YP_270752.2| ATP-dependent RNA helicase SrmB [Colwellia psychrerythraea 34H]
Length = 417
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 100/174 (57%), Gaps = 5/174 (2%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F++ L +E++ ++ K+G P+ IQ + IP + GK V+ S+ +G+G+T A+LLP+ Q
Sbjct: 2 FEQFDLDSELLASINKIGYTKPTSIQELVIPQAMVGKDVLASAPTGTGKTAAFLLPIAQH 61
Query: 203 LRRDEALLP-MKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L P KP PR ++L T E A Q ++ ++ ++ + + GGV+ + D
Sbjct: 62 LLD----YPRTKPGFPRVLILTPTRELAIQIGEDSEQLTELTKIKTGVITGGVNYGSHAD 117
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
+ + +L+ATP +L++IE+ +I +VLDEAD + D GF I++I+
Sbjct: 118 ILTSTTDILVATPGRLLEYIENEQFDAREIEILVLDEADRMLDLGFSETINRIV 171
>gi|163855229|ref|YP_001629527.1| ATP-dependent RNA helicase [Bordetella petrii DSM 12804]
gi|163258957|emb|CAP41256.1| putative ATP-dependent RNA helicase [Bordetella petrii]
Length = 476
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 96/177 (54%), Gaps = 1/177 (0%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
S+F + GL +++++V G P+ IQ +PAV+ G+ V+ ++ +G+G+T A+ LP++
Sbjct: 17 STFADFGLHPQLLQSVADTGYTTPTPIQAQALPAVMAGRDVMGAAQTGTGKTAAFTLPIL 76
Query: 201 QMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
L HP R ++L T E ADQ + K S L S++ GGV
Sbjct: 77 HRLMPLANTSASPARHPVRTLILTPTRELADQVYESVKRYSKHTPLRSAVVFGGVDIGPQ 136
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
++ +L+ATP +L H+E + V+ + +VLDEAD + D GF P++ +I+
Sbjct: 137 KEALRRGCEILVATPGRLLDHVEQKTVNLSQVGILVLDEADRMLDMGFLPDLDRIVR 193
>gi|432116565|gb|ELK37358.1| Putative ATP-dependent RNA helicase DDX31 [Myotis davidii]
Length = 714
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 126/239 (52%), Gaps = 21/239 (8%)
Query: 106 NNPENKPSPPQPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEK-MGLFVP 164
NNPE P P+PE +Q+ +EK S+A F EL L +I + + +F
Sbjct: 80 NNPE-IPELPRPEVKQV------QEKVFSSDA-----FHELDLHPHLISTLNTVLNIFHM 127
Query: 165 SEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCT 224
+ +Q IPA+L G+ ++ S +GSG+TLAY +P+VQ L+ + + + P A+VL
Sbjct: 128 TSVQKQRIPALLQGRDALVRSQTGSGKTLAYCIPVVQSLQAMKTKI-QRGDGPYALVLVP 186
Query: 225 TEESADQGFH-MAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIED 283
T E A Q F K + + + GG K+ + I +LI+TP ++ HI+
Sbjct: 187 TRELALQSFDTFQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHIKS 246
Query: 284 -RNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 341
+N+ + IR++VLDEAD + D GF I+ ILN A+ + Q Q +L++A + E
Sbjct: 247 TKNIHFNRIRWLVLDEADRILDLGFEKTITVILN-----AINAECQERQNVLLSATLTE 300
>gi|256829787|ref|YP_003158515.1| DEAD/DEAH box helicase [Desulfomicrobium baculatum DSM 4028]
gi|256578963|gb|ACU90099.1| DEAD/DEAH box helicase domain protein [Desulfomicrobium baculatum
DSM 4028]
Length = 545
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 95/177 (53%), Gaps = 4/177 (2%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF +LGL+ E++KA++ G P+ IQ IP +L G+ ++ + +G+G+T A+ LP+VQ
Sbjct: 2 SFDQLGLRVELLKAIKNKGYEAPTAIQAQAIPVILAGRDILARAQTGTGKTDAFGLPIVQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
+L L HPRA++L T E A Q K + L ++ GGV +
Sbjct: 62 IL----GLTRGNGHHPRALILTPTRELALQVGESIKAYARKVSLRCTVAFGGVRIEPQIA 117
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
I +L+ATP +L ++S I ++V DEAD + D GF EI+ IL+ L
Sbjct: 118 RLERGIDILVATPGRLLDLASQEHLSLASIEFLVFDEADRMLDLGFSGEINAILDLL 174
>gi|432104108|gb|ELK30938.1| Putative ATP-dependent RNA helicase DDX41 [Myotis davidii]
Length = 657
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 110/207 (53%), Gaps = 15/207 (7%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 215 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 274
Query: 200 VQMLRRDEALLPM-KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSS------MENG 252
+ E LP K P +++C + E A Q + ++ + DSS + G
Sbjct: 275 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 334
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
G+S K + + M++ATP ++ ++ + VS D RY+ LDEAD + D GF +I
Sbjct: 335 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 394
Query: 313 KILNPLKDSALKSNGQGFQTILVTAAI 339
I + K GQ QT+L +A +
Sbjct: 395 TIFSYFK-------GQ-RQTLLFSATM 413
>gi|148973895|ref|ZP_01811428.1| RhlE [Vibrionales bacterium SWAT-3]
gi|145965592|gb|EDK30840.1| RhlE [Vibrionales bacterium SWAT-3]
Length = 401
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 100/176 (56%), Gaps = 3/176 (1%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F +LGL + ++KAV K G P+ IQ IP VL+GK+++ ++ +G+G+T +++LP+++M
Sbjct: 3 FSKLGLSSPIVKAVAKQGYEKPTSIQEKAIPIVLSGKNLIAAAQTGTGKTASFVLPILEM 62
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDV 262
L + E + RA++L T E A Q K + L S GGVS + +D
Sbjct: 63 LSKGET---QRKKRIRAVILTPTRELAVQVEQNIKKYAKFLNLTSLAMYGGVSYQHQKDR 119
Query: 263 SNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +L+ATP ++ R V D++ +VLDEAD + D GF +I+KI+ L
Sbjct: 120 LIEGVDILVATPGRLIDMYGQRAVHFDEVEVLVLDEADRMLDMGFIEDINKIIARL 175
>gi|348532949|ref|XP_003453968.1| PREDICTED: ATP-dependent RNA helicase DDX54-like, partial
[Oreochromis niloticus]
Length = 336
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 116/230 (50%), Gaps = 20/230 (8%)
Query: 116 QPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAV 175
+P+ ++L ++++K SG FQ +GL + K V K G +P+ IQ +P +
Sbjct: 58 EPDTRELVRAQNKKKKKSGG-------FQSMGLSYPVFKGVMKKGYKIPTPIQRKTVPVI 110
Query: 176 LNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHM 235
L+GK VV + +GSG+T A+L+P+ + L+ P RA++L T E A Q
Sbjct: 111 LDGKDVVAMARTGSGKTAAFLIPMFEKLK-----APQAQTGARALILTPTRELALQTMKF 165
Query: 236 AKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 295
K + L +++ GG + + ++I TP ++ + + N+ + YVV
Sbjct: 166 TKELGKFTGLKTALILGGDRMEDQFAALHENPDIIIGTPGRLMHVVMEMNLKLHSVAYVV 225
Query: 296 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 345
DEAD LF+ GF ++ +I+ L D+ QT+L +A + ++L E
Sbjct: 226 FDEADRLFEMGFAEQLQEIIRRLPDTR--------QTLLFSATLPKLLVE 267
>gi|339444851|ref|YP_004710855.1| hypothetical protein EGYY_12990 [Eggerthella sp. YY7918]
gi|338904603|dbj|BAK44454.1| hypothetical protein EGYY_12990 [Eggerthella sp. YY7918]
Length = 418
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 110/211 (52%), Gaps = 10/211 (4%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
++F++LGL + V ++G P+ +Q IP VL G+ VV ++ +G+G+T A+ LPL+
Sbjct: 3 TTFEDLGLSEATLSTVARLGFTEPTPVQQQAIPLVLAGRDVVAAAKTGTGKTAAFALPLI 62
Query: 201 QMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE 260
+ L DEA +P PR +V+ T E A Q ++ +R+ GG+ K
Sbjct: 63 ERLAGDEA--KRRPGSPRVLVVTPTRELAQQIDAACSDMTRGSRVRVLSVVGGMPYKGQI 120
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 320
N I +LIATP + ++ +V D + +VLDEAD + D GF P + KI+
Sbjct: 121 ARLNKGIDILIATPGRLFDLMQRGDVKLDRVETLVLDEADRMLDMGFWPTMKKIVAATPA 180
Query: 321 SALKSNGQGFQTILVTAAIAEMLGEQLSSLM 351
S QT+L +A I + + +S+++
Sbjct: 181 SR--------QTLLFSATIERKVMDSVSTIL 203
>gi|332285242|ref|YP_004417153.1| ATP-dependent RNA helicase [Pusillimonas sp. T7-7]
gi|330429195|gb|AEC20529.1| ATP-dependent RNA helicase [Pusillimonas sp. T7-7]
Length = 455
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 96/178 (53%), Gaps = 1/178 (0%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F + GL +++AV + G P+ IQ +P V++G+ V+ ++ +G+G+T A+ LP++
Sbjct: 13 TFSDFGLHPSVLQAVTETGYTTPTPIQAQAMPMVMDGRDVMGAAQTGTGKTAAFTLPILH 72
Query: 202 MLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE 260
L + HP RA++L T E ADQ + L S++ GGV
Sbjct: 73 RLMQFANTSASPARHPVRALILTPTRELADQVADSVTTYAKFTPLRSTVVFGGVDIGPQR 132
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
D +LIATP +L H+E +NV+ + +VLDEAD + D GF P++ +I+ L
Sbjct: 133 DALRRGCEILIATPGRLLDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLDRIVRLL 190
>gi|334311247|ref|XP_001381058.2| PREDICTED: probable ATP-dependent RNA helicase DDX41 [Monodelphis
domestica]
Length = 617
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 110/207 (53%), Gaps = 15/207 (7%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 175 LKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 234
Query: 200 VQMLRRDEALLPM-KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSS------MENG 252
+ E LP K P +++C + E A Q + ++ + DSS + G
Sbjct: 235 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPPLRCALCIG 294
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
G+S K + + M++ATP ++ ++ + VS D RY+ LDEAD + D GF +I
Sbjct: 295 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 354
Query: 313 KILNPLKDSALKSNGQGFQTILVTAAI 339
I + K GQ QT+L +A +
Sbjct: 355 TIFSYFK-------GQR-QTLLFSATM 373
>gi|119945503|ref|YP_943183.1| ATP-dependent RNA helicase [Psychromonas ingrahamii 37]
gi|119864107|gb|ABM03584.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
ingrahamii 37]
Length = 433
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 118/228 (51%), Gaps = 15/228 (6%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
S +GL AE++KAV+ G + IQ IP + +G ++ S+ +G+G+T A+ LP++
Sbjct: 2 SVDAIGLSAELLKAVKACGYKNLTPIQQQAIPIIRSGSDLLASAQTGTGKTAAFTLPILD 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
+L ++ P +A++L T E A Q K S L S + +GG S +
Sbjct: 62 ILAKNANEKPTTNTTIKALILTPTRELAAQVAANVKEYSQFLPLTSGVVSGGRSMDSQTK 121
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDS 321
+ + +L+ATP +L+H+ RNV ++Y+ LDEAD + D GF +I K++ +K
Sbjct: 122 MLKVGVDVLVATPGRLLEHLTLRNVDLSHVKYLTLDEADRMLDLGFLTDIQKLMEAIK-- 179
Query: 322 ALKSNGQGFQTILVTAAIA---EMLGEQLSSLMECLE----RDNAGKV 362
Q QT++ +A + + L +Q+ + + LE AGKV
Sbjct: 180 ------QKHQTLMFSATFSNKVKTLAKQILTTPKTLEISPQNSTAGKV 221
>gi|83746106|ref|ZP_00943161.1| ATP-dependent RNA helicase RhlE [Ralstonia solanacearum UW551]
gi|83727289|gb|EAP74412.1| ATP-dependent RNA helicase RhlE [Ralstonia solanacearum UW551]
Length = 603
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 102/198 (51%), Gaps = 4/198 (2%)
Query: 125 IASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLS 184
+A ER + + + SF ELGL ++++AV ++G P+ IQ IPA+L G ++
Sbjct: 43 LAHERMRGTRRSNRFSMSFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAG 102
Query: 185 SGSGSGRTLAYLLPLVQML---RRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFIS 240
+ +G+G+T + LPL+ L + ++ P +P RA+VL T E A Q +
Sbjct: 103 AQTGTGKTAGFTLPLLHRLSAAQPNKVHTPHGMRYPIRALVLTPTRELAAQVEESVRAYG 162
Query: 241 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 300
L S + GGV D + +++ATP +L H+ R + I +VLDEAD
Sbjct: 163 KYLPLKSMVMFGGVGINPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEAD 222
Query: 301 TLFDRGFGPEISKILNPL 318
+ D GF +I KILN L
Sbjct: 223 RMLDMGFIHDIRKILNIL 240
>gi|380798911|gb|AFE71331.1| putative ATP-dependent RNA helicase DDX41, partial [Macaca mulatta]
Length = 606
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 110/207 (53%), Gaps = 15/207 (7%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 164 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 223
Query: 200 VQMLRRDEALLPM-KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSS------MENG 252
+ E LP K P +++C + E A Q + ++ + DSS + G
Sbjct: 224 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 283
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
G+S K + + M++ATP ++ ++ + VS D RY+ LDEAD + D GF +I
Sbjct: 284 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 343
Query: 313 KILNPLKDSALKSNGQGFQTILVTAAI 339
I + K GQ QT+L +A +
Sbjct: 344 TIFSYFK-------GQ-RQTLLFSATM 362
>gi|312882439|ref|ZP_07742180.1| ATP-dependent RNA helicase RhlE [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309369839|gb|EFP97350.1| ATP-dependent RNA helicase RhlE [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 452
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 63/177 (35%), Positives = 96/177 (54%), Gaps = 3/177 (1%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
F LGL A ++KA+E++G PS IQ IPAVL+GK V+ ++ +G+G+T + LP+++
Sbjct: 2 GFTSLGLSAPILKAIEELGYDTPSPIQKQAIPAVLSGKDVMAAAQTGTGKTAGFTLPILE 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L ++ + K H RA++L T E A Q S RL S + GGV
Sbjct: 62 RLDNNQRV---KGNHVRALILTPTRELAAQIQENVFKYSRHQRLTSQVVFGGVKINPQMM 118
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+L+ATP ++ + + + D + +VLDEAD + D GF +I KILN L
Sbjct: 119 KLRKGCDVLVATPGRLMDLYQQKAIKFDQLEVLVLDEADRMLDMGFIHDIRKILNLL 175
>gi|302758696|ref|XP_002962771.1| hypothetical protein SELMODRAFT_165331 [Selaginella moellendorffii]
gi|300169632|gb|EFJ36234.1| hypothetical protein SELMODRAFT_165331 [Selaginella moellendorffii]
Length = 786
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 72/205 (35%), Positives = 110/205 (53%), Gaps = 16/205 (7%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F+ LGL + +A+ K G VP+ IQ +P +L G VV + +GSG+T A+L+P+++
Sbjct: 26 FESLGLSPPIYQAIRKKGYSVPTPIQRKTLPLILAGNDVVAMARTGSGKTAAFLIPMLEK 85
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA-LED 261
LR A P KP RA++L T E A Q F K + L ++ GG S + E
Sbjct: 86 LR---AHSP-KP-GARALILSPTRELALQTFKFCKELGRNTDLRITVLVGGDSMETQFEQ 140
Query: 262 VSNAPIGMLIATPSEVLQHI-EDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 320
+S P +LIATP ++ H+ E +S + YVV DEAD LF+ GF ++ +IL L +
Sbjct: 141 LSKNP-DILIATPGRLMHHLSEVEGMSLKSVEYVVFDEADRLFEMGFAEQLRQILTQLHE 199
Query: 321 SALKSNGQGFQTILVTAAIAEMLGE 345
QT+L +A + +L +
Sbjct: 200 LR--------QTLLFSATLPRLLAD 216
>gi|322787030|gb|EFZ13254.1| hypothetical protein SINV_10425 [Solenopsis invicta]
Length = 775
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 115/229 (50%), Gaps = 26/229 (11%)
Query: 118 EQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLN 177
E +++NI + K SG FQ + L ++K + K G +P+ IQ IP L
Sbjct: 20 ENNEITNIKKKICKKSGG-------FQSMALSFPVLKGILKRGYKIPTPIQRKTIPLALE 72
Query: 178 GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK 237
G+ VV + +GSG+T +L+PL + L+ +A RA++L T E A Q K
Sbjct: 73 GRDVVAMARTGSGKTACFLIPLFEKLKARQA-----KAGARALILSPTRELALQTL---K 124
Query: 238 FISHCARLDSSMENGGVSSKALEDVSNAPIG---MLIATPSEVLQHIEDRNVSCDDIRYV 294
FI R + + +++D NA G +++ATP L + ++ ++ YV
Sbjct: 125 FIKELGRFTGFKASVILGGDSMDDQFNAIHGNPDIIVATPGRFLHICVEMDLQLKNVEYV 184
Query: 295 VLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEML 343
V DEAD LF+ GFG +I +I+N L +S QT+L +A + ++L
Sbjct: 185 VFDEADRLFEMGFGEQIQEIVNRLPESR--------QTLLFSATLPKIL 225
>gi|421900031|ref|ZP_16330394.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2]
gi|206591237|emb|CAQ56849.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2]
Length = 559
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 102/198 (51%), Gaps = 4/198 (2%)
Query: 125 IASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLS 184
+A ER + + + SF ELGL ++++AV ++G P+ IQ IPA+L G ++
Sbjct: 1 MAHERMRGTRRSNRFSMSFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAG 60
Query: 185 SGSGSGRTLAYLLPLVQML---RRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFIS 240
+ +G+G+T + LPL+ L + ++ P +P RA+VL T E A Q +
Sbjct: 61 AQTGTGKTAGFTLPLLHRLSAAQPNKVHTPHGMRYPIRALVLTPTRELAAQVEESVRAYG 120
Query: 241 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 300
L S + GGV D + +++ATP +L H+ R + I +VLDEAD
Sbjct: 121 KYLPLKSMVMFGGVGINPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEAD 180
Query: 301 TLFDRGFGPEISKILNPL 318
+ D GF +I KILN L
Sbjct: 181 RMLDMGFIHDIRKILNIL 198
>gi|71275478|ref|ZP_00651764.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
fastidiosa Dixon]
gi|170729397|ref|YP_001774830.1| ATP-dependent RNA helicase [Xylella fastidiosa M12]
gi|71163778|gb|EAO13494.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
fastidiosa Dixon]
gi|71729590|gb|EAO31696.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
fastidiosa Ann-1]
gi|167964190|gb|ACA11200.1| ATP-dependent RNA helicase [Xylella fastidiosa M12]
Length = 446
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 112/216 (51%), Gaps = 10/216 (4%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F+ LGL +++A+ + G +P+ IQ IP L G ++ ++ +G+G+T A+ LP++Q
Sbjct: 2 NFETLGLLPSLLRALSEQGYEIPTPIQQQAIPLALAGHDLLAAAQTGTGKTAAFGLPVLQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L A + PRA+VL T E A Q + + R+ S++ GGV D
Sbjct: 62 RLM--AASSNVGAGKPRALVLTPTRELATQVHDSLRGYAKYQRVSSAVIYGGVGMGNQLD 119
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDS 321
V + +LIA P ++ HIE R+V + +VLDEAD + D GF I +IL L
Sbjct: 120 VLRRGVDLLIACPGRLIDHIERRSVDLSGVGILVLDEADRMLDMGFLHSIKRILGKLPR- 178
Query: 322 ALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERD 357
Q QT+L +A AE + +QL+ C R+
Sbjct: 179 ------QNRQTLLFSATFAEPI-KQLALEFMCRPRE 207
>gi|154286484|ref|XP_001544037.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|160380603|sp|A6QUM7.1|DBP10_AJECN RecName: Full=ATP-dependent RNA helicase DBP10
gi|150407678|gb|EDN03219.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 900
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 119/223 (53%), Gaps = 17/223 (7%)
Query: 126 ASEREKSS--GSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVL 183
A+ R+ S+ G + FQ LGL A ++KA+ + G VP+ IQ IP VL+ + VV
Sbjct: 69 AANRKASNLRGRTVKKGGGFQSLGLNAALLKAITRKGFSVPTPIQRKTIPLVLDDQDVVG 128
Query: 184 SSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 243
+ +GSG+T A+++P+++ L+ A RA++L + E A Q + K +
Sbjct: 129 MARTGSGKTAAFVIPMIEKLKSHSA-----KFGSRALILSPSRELALQTLKVVKELGRGT 183
Query: 244 RLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 302
L S + GG S + E +++ P ++IATP L + ++ IRYVV DEAD L
Sbjct: 184 DLKSVLLVGGDSLEEQFEYMASNP-DIIIATPGRFLHLKVEMSLDLSSIRYVVFDEADRL 242
Query: 303 FDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 345
F+ GF ++++IL+ L S QT+L +A + + L E
Sbjct: 243 FEMGFATQLTEILHGLPSSR--------QTLLFSATLPKSLVE 277
>gi|325094395|gb|EGC47705.1| ATP-dependent RNA helicase DBP10 [Ajellomyces capsulatus H88]
Length = 941
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 119/223 (53%), Gaps = 17/223 (7%)
Query: 126 ASEREKSS--GSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVL 183
A+ R+ S+ G + FQ LGL A ++KA+ + G VP+ IQ IP VL+ + VV
Sbjct: 69 AANRKASNLKGRTVKKGGGFQSLGLNAALLKAITRKGFSVPTPIQRKTIPLVLDDQDVVG 128
Query: 184 SSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 243
+ +GSG+T A+++P+++ L+ A RA++L + E A Q + K +
Sbjct: 129 MARTGSGKTAAFVIPMIEKLKSHSA-----KFGSRALILSPSRELALQTLKVVKELGRGT 183
Query: 244 RLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 302
L S + GG S + E +++ P ++IATP L + ++ IRYVV DEAD L
Sbjct: 184 DLKSVLLVGGDSLEEQFEYMASNP-DIIIATPGRFLHLKVEMSLDLSSIRYVVFDEADRL 242
Query: 303 FDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 345
F+ GF ++++IL+ L S QT+L +A + + L E
Sbjct: 243 FEMGFATQLTEILHGLPSSR--------QTLLFSATLPKSLVE 277
>gi|27545287|ref|NP_775375.1| ATP-dependent RNA helicase DDX54 [Danio rerio]
gi|20977591|gb|AAM28223.1| ATP-dependent RNA helicase [Danio rerio]
Length = 862
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 68/228 (29%), Positives = 115/228 (50%), Gaps = 20/228 (8%)
Query: 118 EQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLN 177
+ ++L ++++K SG FQ +GL + K + K G VP+ IQ IP +L+
Sbjct: 62 DTRELVRAQNKKKKKSGG-------FQSMGLSYPVYKGIMKKGYKVPTPIQRKTIPVILD 114
Query: 178 GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK 237
GK VV + +GSG+T A+L+PL + L+ P RA++L T E A Q K
Sbjct: 115 GKDVVAMARTGSGKTAAFLVPLFEKLK-----APQAQTGARALILTPTRELALQTMKFTK 169
Query: 238 FISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLD 297
+ L +++ GG S + ++I TP ++ I++ N+ + YVV D
Sbjct: 170 ELGKFTGLRTALILGGDSMDDQFAALHENPDIIIGTPGRLMHVIQEMNLKLQSVEYVVFD 229
Query: 298 EADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 345
EAD LF+ GF ++ +I+ L D+ QT+L +A + +++ E
Sbjct: 230 EADRLFEMGFAEQLQEIIRRLPDAR--------QTLLFSATLPKLIVE 269
>gi|395736563|ref|XP_002816330.2| PREDICTED: probable ATP-dependent RNA helicase DDX41 [Pongo abelii]
Length = 802
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 122/239 (51%), Gaps = 15/239 (6%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 360 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 419
Query: 200 VQMLRRDEALLPM-KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSS------MENG 252
+ E LP K P +++C + E A Q + ++ + DSS + G
Sbjct: 420 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 479
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
G+S K + + M++ATP ++ ++ + VS D RY+ LDEAD + D GF +I
Sbjct: 480 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 539
Query: 313 KILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAGKVTAMLLEMDQ 371
I + K GQ QT+L +A + + + S + N G+ A L++ Q
Sbjct: 540 TIFSYFK-------GQ-RQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQ 590
>gi|393760514|ref|ZP_10349324.1| ATP-dependent RNA helicase [Alcaligenes faecalis subsp. faecalis
NCIB 8687]
gi|393161371|gb|EJC61435.1| ATP-dependent RNA helicase [Alcaligenes faecalis subsp. faecalis
NCIB 8687]
Length = 487
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 90/174 (51%), Gaps = 1/174 (0%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F LGL +++AV G P+ IQ IP V+ G ++ ++ +G+G+T + LP++
Sbjct: 6 TFAALGLAEPLLRAVTDAGYTHPTPIQAQAIPKVIEGGDLLAAAQTGTGKTAGFTLPILH 65
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L + KP PRA++L T E A Q + S RL S + GGV+
Sbjct: 66 RLL-NNPQQNRKPGRPRALILAPTRELAAQVEESVRLYSQHTRLRSMVMFGGVNINPQFH 124
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
P+ +L+ATP +L H+ R V + +VLDEAD + D GF +I KI+
Sbjct: 125 ALRKPLDILVATPGRLLDHVRQRTVDLTGVEILVLDEADRMLDMGFIRDIRKII 178
>gi|119605383|gb|EAW84977.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41, isoform CRA_a [Homo
sapiens]
gi|119605386|gb|EAW84980.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41, isoform CRA_a [Homo
sapiens]
gi|193787208|dbj|BAG52414.1| unnamed protein product [Homo sapiens]
Length = 496
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 110/207 (53%), Gaps = 15/207 (7%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 54 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 113
Query: 200 VQMLRRDEALLPM-KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSS------MENG 252
+ E LP K P +++C + E A Q + ++ + DSS + G
Sbjct: 114 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 173
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
G+S K + + M++ATP ++ ++ + VS D RY+ LDEAD + D GF +I
Sbjct: 174 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 233
Query: 313 KILNPLKDSALKSNGQGFQTILVTAAI 339
I + K GQ QT+L +A +
Sbjct: 234 TIFSYFK-------GQR-QTLLFSATM 252
>gi|269140076|ref|YP_003296777.1| ATP-dependent RNA helicase [Edwardsiella tarda EIB202]
gi|387868591|ref|YP_005700060.1| ATP-dependent RNA helicase SrmB [Edwardsiella tarda FL6-60]
gi|267985737|gb|ACY85566.1| ATP-dependent RNA helicase [Edwardsiella tarda EIB202]
gi|304559904|gb|ADM42568.1| ATP-dependent RNA helicase SrmB [Edwardsiella tarda FL6-60]
Length = 448
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 94/175 (53%), Gaps = 5/175 (2%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
++F EL L ++ A+ G P+ IQ IP ++G+ V+ S+ +G+G+T A+LLP +
Sbjct: 4 TNFSELELDERLLDALRDKGYERPTAIQIAAIPPAMDGRDVLGSAPTGTGKTAAFLLPAL 63
Query: 201 QMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
Q L P K P R ++L T E A Q A+ ++ LD + GGVS
Sbjct: 64 QHL----LDFPRKKSGPPRVLILTPTRELAMQVADQARELARHTSLDITTITGGVSYINH 119
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
++ N M++ATP +LQ+I++ N C + ++LDEAD + D GF +I +
Sbjct: 120 AEIFNTNQDMVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDMGFASDIETV 174
>gi|257092638|ref|YP_003166279.1| DEAD/DEAH box helicase domain-containing protein [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
gi|257045162|gb|ACV34350.1| DEAD/DEAH box helicase domain protein [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 481
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 95/176 (53%), Gaps = 2/176 (1%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL AE+ +AV+ G P+ +Q IP +L G+ V+ + +G+G+T + LPL+Q
Sbjct: 4 SFALLGLSAELTRAVDDQGYSEPTPVQAQAIPVILAGRDVLAGAQTGTGKTAGFTLPLLQ 63
Query: 202 ML--RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
L R A +P + RA++L T E A Q + L S++ GGV+
Sbjct: 64 RLATRAAPAGVPGQRSPVRALILTPTRELAAQIEESVRTYGKYLPLKSTLIYGGVNINPQ 123
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
D + +L+ATP +L H++ + VS + +VLDEAD + D GF +I +IL
Sbjct: 124 IDALRRGVDILVATPGRLLDHLQQKTVSLAQVEILVLDEADRMLDMGFIRDIRRIL 179
>gi|254462976|ref|ZP_05076392.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium
HTCC2083]
gi|206679565|gb|EDZ44052.1| ATP-dependent RNA helicase RhlE [Rhodobacteraceae bacterium
HTCC2083]
Length = 495
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 100/178 (56%), Gaps = 5/178 (2%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++ F +L L +++KA++ G P+ IQ IP L G+ V+ + +G+G+T ++ LP+
Sbjct: 1 MTKFSDLNLDPKVLKAIDDAGYESPTPIQEGAIPPALEGRDVLGIAQTGTGKTASFTLPM 60
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSSKA 258
+ ML + A M PR++VLC T E A Q + + + +L ++ GGVS K
Sbjct: 61 ITMLGKGRARARM----PRSLVLCPTRELAAQVAENFDTYTKYHKKLSKALLIGGVSFKE 116
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ + + + +LIATP +L H+E + ++ +V+DEAD + D GF P+I +I
Sbjct: 117 QDRLIDKGVDVLIATPGRLLDHVERGKLLLTGVQVMVVDEADRMLDMGFIPDIERIFG 174
>gi|395505230|ref|XP_003756946.1| PREDICTED: probable ATP-dependent RNA helicase DDX41 [Sarcophilus
harrisii]
Length = 624
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 110/207 (53%), Gaps = 15/207 (7%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 182 LKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 241
Query: 200 VQMLRRDEALLPM-KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSS------MENG 252
+ E LP K P +++C + E A Q + ++ + DSS + G
Sbjct: 242 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPPLRCALCIG 301
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
G+S K + + M++ATP ++ ++ + VS D RY+ LDEAD + D GF +I
Sbjct: 302 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 361
Query: 313 KILNPLKDSALKSNGQGFQTILVTAAI 339
I + K GQ QT+L +A +
Sbjct: 362 TIFSYFK-------GQR-QTLLFSATM 380
>gi|389877863|ref|YP_006371428.1| DEAD/DEAH box helicase [Tistrella mobilis KA081020-065]
gi|388528647|gb|AFK53844.1| DeaD [Tistrella mobilis KA081020-065]
Length = 521
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 95/173 (54%), Gaps = 4/173 (2%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F++LGL AE+++AV G P+ IQ IP VL G+ V+ + +G+G+T ++ LP++
Sbjct: 2 TFEDLGLSAEVLRAVTDAGYNQPTPIQEKAIPWVLQGRDVLGCAQTGTGKTASFTLPMID 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
+L + ++ PR++++ T E A Q L ++ GGVS E
Sbjct: 62 ILAQGR----VRARMPRSLIMTPTRELAQQIAENFNTYGKYTPLSMALLIGGVSFSDQEK 117
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+ + +LIATP +L H E V D+R +V+DEAD + D GF P++ +I
Sbjct: 118 ALDKGVDVLIATPGRLLDHFERGRVLLTDVRILVVDEADRMLDMGFIPDLERI 170
>gi|34364998|emb|CAE46035.1| hypothetical protein [Homo sapiens]
Length = 496
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 110/207 (53%), Gaps = 15/207 (7%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 54 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 113
Query: 200 VQMLRRDEALLPM-KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSS------MENG 252
+ E LP K P +++C + E A Q + ++ + DSS + G
Sbjct: 114 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 173
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
G+S K + + M++ATP ++ ++ + VS D RY+ LDEAD + D GF +I
Sbjct: 174 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 233
Query: 313 KILNPLKDSALKSNGQGFQTILVTAAI 339
I + K GQ QT+L +A +
Sbjct: 234 TIFSYFK-------GQR-QTLLFSATM 252
>gi|209694151|ref|YP_002262079.1| ATP-dependent RNA helicase SrmB [Aliivibrio salmonicida LFI1238]
gi|208008102|emb|CAQ78243.1| ATP-dependent RNA helicase SrmB [Aliivibrio salmonicida LFI1238]
Length = 416
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 100/184 (54%), Gaps = 19/184 (10%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F +L L +++A+E++G P+++Q + IP L GK ++ S+ +G+G++ A+LLP
Sbjct: 1 MIKTFADLDLSPNLLRALEEIGYQRPTQVQAMAIPEALEGKDILASAPTGTGKSAAFLLP 60
Query: 199 LVQML----RRDEALLPMKPMHPRAIVLCTTEE----SADQGFHMAKFISHCARLDSSME 250
+Q L RRD P R ++L T E AD+ +AK+ H
Sbjct: 61 ALQHLDDFPRRD-------PGPARVLILTPTRELAIQVADEARELAKYTHH----KVFTI 109
Query: 251 NGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPE 310
GG+S + D+ +++ATP ++++IE C I ++LDEAD + D GFGP
Sbjct: 110 TGGISYQEHADILARTQDIVVATPGRLMEYIEAERFDCRAIETLILDEADRMLDMGFGPV 169
Query: 311 ISKI 314
+ ++
Sbjct: 170 VDRL 173
>gi|195437123|ref|XP_002066494.1| GK18312 [Drosophila willistoni]
gi|194162579|gb|EDW77480.1| GK18312 [Drosophila willistoni]
Length = 1424
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 103/186 (55%), Gaps = 3/186 (1%)
Query: 131 KSSGSNA-EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGS 189
K SG N + V +F+E L+ ++ ++K VP+ IQ V IP + G+ ++ + +GS
Sbjct: 1002 KVSGENPPKPVKTFEEAKLRDILMDNIKKSAYTVPTPIQKVSIPVISAGRDLMACAQTGS 1061
Query: 190 GRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSM 249
G+T A+LLP++ + L + P+AI++ T E A Q F+ A+ +H + L ++
Sbjct: 1062 GKTAAFLLPILNHILDKGYELEIG--KPQAIIMSPTRELAVQIFNEARKFAHNSYLKITI 1119
Query: 250 ENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGP 309
GG S K + +LIATP +L +E ++ +D R+VVLDEAD + D GF
Sbjct: 1120 VYGGTSVKYQNESITKGCHILIATPGRLLDFVERTFITFEDTRFVVLDEADRMLDMGFSE 1179
Query: 310 EISKIL 315
+ KI+
Sbjct: 1180 SMRKII 1185
>gi|90577843|ref|ZP_01233654.1| putative ATP-dependent RNA helicase [Photobacterium angustum S14]
gi|90440929|gb|EAS66109.1| putative ATP-dependent RNA helicase [Photobacterium angustum S14]
Length = 446
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 96/173 (55%), Gaps = 5/173 (2%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F++LGL ++K + + +EIQ IP + GK ++ SS +GSG+TLA+LLP +Q
Sbjct: 3 FKDLGLDPRLLKKINHLAFDRATEIQQTAIPVAIAGKDILASSKTGSGKTLAFLLPAMQR 62
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS-SKALED 261
+ R + P PR ++L T E A Q F + ++ D ++ GG + + ++
Sbjct: 63 MYRSK---PFTRRDPRVLILTPTRELAKQVFAQLRTLNAGTPYDGTLIVGGENFNDQVKA 119
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+ N P+ ++ATP + H+E R+ D + ++LDEAD + D GF ++ +I
Sbjct: 120 LRNDPM-FVVATPGRLADHLEHRSTRLDGLEMLILDEADRMLDLGFEAQLRRI 171
>gi|440490575|gb|ELQ70119.1| ATP-dependent RNA helicase HAS1 [Magnaporthe oryzae P131]
Length = 578
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 103/178 (57%), Gaps = 5/178 (2%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F EL L +KA+E+MG +EIQ GIP +L GK V+ ++ +GSG+TLA+L+P V+
Sbjct: 113 AFSELNLSENTMKAIEEMGFTKMTEIQRRGIPPLLAGKDVLGAAKTGSGKTLAFLIPAVE 172
Query: 202 MLRRDEALLPMKPMHPRAIVLCT-TEESADQGFHMAKFISHCARLDSSMENGGVSSKALE 260
MLR L KP + +++ + T E A Q F +A+ + + GG + +A
Sbjct: 173 MLRS----LKFKPRNGTGVIVVSPTRELALQIFGVARDLMKHHSQTYGIVIGGANRRAEA 228
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ + + +LIATP +L H+++ ++R +V+DEAD + + GF E+ +I+ L
Sbjct: 229 EKLSKGVNLLIATPGRLLDHLQNTPFVFKNLRSLVIDEADRILEIGFEDEMRQIIKIL 286
>gi|417948576|ref|ZP_12591720.1| ATP-dependent RNA helicase [Vibrio splendidus ATCC 33789]
gi|342809523|gb|EGU44640.1| ATP-dependent RNA helicase [Vibrio splendidus ATCC 33789]
Length = 188
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 100/176 (56%), Gaps = 3/176 (1%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F +LGL + ++KAV K G P+ IQ IP VL+GK+++ ++ +G+G+T +++LP+++M
Sbjct: 3 FSKLGLSSPIVKAVAKQGYEKPTSIQEKAIPIVLSGKNLIAAAQTGTGKTASFVLPILEM 62
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDV 262
L + E + RA++L T E A Q K + L S GGVS + +D
Sbjct: 63 LSKGET---QRKKRIRAVILTPTRELAVQVEQNIKKYAKFLNLTSLAMYGGVSYQHQKDR 119
Query: 263 SNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +L+ATP ++ R V D++ +VLDEAD + D GF +I+KI+ L
Sbjct: 120 LIEGVDILVATPGRLIDMYGQRAVHFDEVEVLVLDEADRMLDMGFIEDINKIIARL 175
>gi|213510948|ref|NP_001133799.1| probable ATP-dependent RNA helicase DDX41 [Salmo salar]
gi|209155372|gb|ACI33918.1| Probable ATP-dependent RNA helicase DDX41 [Salmo salar]
Length = 615
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 111/209 (53%), Gaps = 19/209 (9%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ ++K ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 173 IKSFREMKFPQAILKGLKKKGIVHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPI 232
Query: 200 VQMLRRDEALLPM-KPMHPRAIVLCTTEESADQGFHMAKFISHCARLD--------SSME 250
+ E LP K P +++C + E A Q + ++ +C L+ S +
Sbjct: 233 IMFSLEQEKRLPFCKSEGPYGLIICPSRELAKQTHTIIEY--YCKLLEEEGAPHMRSVLC 290
Query: 251 NGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPE 310
GG+S K +V + M++ATP ++ ++ + +S D RY+ LDEAD + D GF +
Sbjct: 291 IGGMSVKDQMEVVKHGVHMMVATPGRLMDLLQKKMISLDICRYLALDEADRMIDMGFEED 350
Query: 311 ISKILNPLKDSALKSNGQGFQTILVTAAI 339
I I + K GQ QT+L +A +
Sbjct: 351 IRTIFSYFK-------GQR-QTLLFSATM 371
>gi|89075608|ref|ZP_01162009.1| putative ATP-dependent RNA helicase [Photobacterium sp. SKA34]
gi|89048615|gb|EAR54188.1| putative ATP-dependent RNA helicase [Photobacterium sp. SKA34]
Length = 446
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 96/173 (55%), Gaps = 5/173 (2%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F++LGL ++K + + +EIQ IP + GK ++ SS +GSG+TLA+LLP +Q
Sbjct: 3 FKDLGLDPRLLKKINHLAFDRATEIQQTAIPVAIAGKDILASSKTGSGKTLAFLLPAMQR 62
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS-SKALED 261
+ R + P PR ++L T E A Q F + ++ D ++ GG + + ++
Sbjct: 63 MYRSK---PFTRRDPRVLILTPTRELAKQVFAQLRTLNAGTPYDGTLIVGGENFNDQVKA 119
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+ N P+ ++ATP + H+E R+ D + ++LDEAD + D GF ++ +I
Sbjct: 120 LRNDPM-FVVATPGRLADHLEHRSTHLDGLEMLILDEADRILDLGFEAQLRRI 171
>gi|328781928|ref|XP_397101.4| PREDICTED: ATP-dependent RNA helicase DDX54-like [Apis mellifera]
Length = 772
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 117/226 (51%), Gaps = 20/226 (8%)
Query: 118 EQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLN 177
E+ ++++I + K SG FQ + L ++K + K G +P+ IQ IP L
Sbjct: 20 EENEINDIKKKVYKKSGG-------FQSMALSFPILKGILKRGYKIPTPIQRKTIPLALE 72
Query: 178 GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK 237
G+ +V + +GSG+T +L+PL + L+ +A + RA++L T E A Q K
Sbjct: 73 GRDIVAMARTGSGKTACFLIPLFEKLKIRQA-----KVGARALILSPTRELALQTLKFIK 127
Query: 238 FISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLD 297
+ L +++ GG + + + +LIATP L + ++ ++I YVV D
Sbjct: 128 ELGRFTGLKATIILGGDNMENQFSAIHGNPDILIATPGRFLHICIEMDLQLNNIEYVVFD 187
Query: 298 EADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEML 343
EAD LF+ GFG +I++I+N L +S QT+L +A + ++L
Sbjct: 188 EADRLFEMGFGEQINEIINRLPESR--------QTLLFSATLPKLL 225
>gi|225558604|gb|EEH06888.1| ATP-dependent RNA helicase DBP10 [Ajellomyces capsulatus G186AR]
Length = 940
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 111/204 (54%), Gaps = 15/204 (7%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
FQ LGL A ++KA+ + G VP+ IQ IP VL+ + VV + +GSG+T A+++P+++
Sbjct: 90 FQSLGLNAALLKAITRKGFSVPTPIQRKTIPLVLDDQDVVGMARTGSGKTAAFVIPMIEK 149
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS-SKALED 261
L+ A RA++L + E A Q + K + L S + GG S + E
Sbjct: 150 LKSHSA-----KFGSRALILSPSRELALQTLKVVKELGRGTDLKSVLLVGGDSLEEQFEY 204
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDS 321
+++ P ++IATP L + ++ IRYVV DEAD LF+ GF ++++IL+ L S
Sbjct: 205 MASNP-DIIIATPGRFLHLKVEMSLDLSSIRYVVFDEADRLFEMGFATQLTEILHGLPSS 263
Query: 322 ALKSNGQGFQTILVTAAIAEMLGE 345
QT+L +A + + L E
Sbjct: 264 R--------QTLLFSATLPKSLVE 279
>gi|317488345|ref|ZP_07946905.1| DEAD/DEAH box helicase [Eggerthella sp. 1_3_56FAA]
gi|325830722|ref|ZP_08164106.1| ATP-dependent RNA helicase RhlE [Eggerthella sp. HGA1]
gi|316912552|gb|EFV34101.1| DEAD/DEAH box helicase [Eggerthella sp. 1_3_56FAA]
gi|325487129|gb|EGC89572.1| ATP-dependent RNA helicase RhlE [Eggerthella sp. HGA1]
Length = 443
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 110/218 (50%), Gaps = 25/218 (11%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
S+FQ+LGL + AVE+MG P+ +Q IP VL G+ VV ++ +G+G+T A+ LPL
Sbjct: 32 STFQDLGLSETTLSAVERMGFTAPTPVQEQAIPLVLEGRDVVAAATTGTGKTAAFALPLF 91
Query: 201 QMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMEN------GGV 254
+ + R + +P PRA+V+ T E A Q + C +L + GG
Sbjct: 92 ERIGRAK-----RPGSPRALVVSPTRELAQQ------IDAACTQLAKASNRRMLTVMGGT 140
Query: 255 SSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
K + I +L+ATP + +E V D+ +VLDEAD + D GF P + K+
Sbjct: 141 KYKGQIAKLDRGIDVLVATPGRLYDLMERGVVKLRDVEVLVLDEADRMLDMGFWPTMKKV 200
Query: 315 LNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLME 352
+ S QT+L +A + + + +SS+++
Sbjct: 201 VAATPSSR--------QTLLFSATLDRKVMQSVSSILK 230
>gi|367036228|ref|XP_003667396.1| hypothetical protein MYCTH_2313207 [Myceliophthora thermophila ATCC
42464]
gi|347014669|gb|AEO62151.1| hypothetical protein MYCTH_2313207 [Myceliophthora thermophila ATCC
42464]
Length = 589
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 103/178 (57%), Gaps = 5/178 (2%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF EL L + +KA+++MG +EIQ GIP +L GK V+ ++ +GSG+TLA+L+P V+
Sbjct: 116 SFSELNLSEKTMKAIDEMGFTKMTEIQRRGIPPLLAGKDVLGAAKTGSGKTLAFLIPAVE 175
Query: 202 MLRRDEALLPMKPMHPR-AIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE 260
ML + L KP + AIV+ T E A Q F +A+ + + GG + +A
Sbjct: 176 ML----SALRFKPRNGTGAIVVTPTRELALQIFGVARELMKHHTQTYGVVIGGANRRAEA 231
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
D + +LIATP +L H+++ ++R +++DEAD + + GF E+ +I+ L
Sbjct: 232 DKLGKGVNLLIATPGRLLDHLQNTPFVFKNLRSLIIDEADRILEIGFEDEMRQIVKIL 289
>gi|149914601|ref|ZP_01903131.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. AzwK-3b]
gi|149811394|gb|EDM71229.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. AzwK-3b]
Length = 511
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 98/177 (55%), Gaps = 4/177 (2%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++ F +L L +++KAVE+ G P+ IQ IP L G+ ++ + +G+G+T ++ LP+
Sbjct: 1 MTKFSDLNLNPKVLKAVEEAGYTDPTPIQAGAIPPALEGRDILGIAQTGTGKTASFTLPM 60
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
+ +L R A M PR++VLC T E A Q S +L ++ GGVS K
Sbjct: 61 LSLLARGRARARM----PRSLVLCPTRELAAQVAENFDTYSKNLKLTKALLIGGVSFKEQ 116
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ + + + +LI TP +L H E + ++ +V+DEAD + D GF P+I +I +
Sbjct: 117 DKLIDKGVDVLICTPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFS 173
>gi|240275043|gb|EER38558.1| ATP-dependent RNA helicase DBP10 [Ajellomyces capsulatus H143]
Length = 941
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 119/223 (53%), Gaps = 17/223 (7%)
Query: 126 ASEREKSS--GSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVL 183
A+ R+ S+ G + FQ LGL A ++KA+ + G VP+ IQ IP VL+ + VV
Sbjct: 69 AANRKASNLKGRTVKKGGGFQPLGLNAALLKAITRKGFSVPTPIQRKTIPLVLDDQDVVG 128
Query: 184 SSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 243
+ +GSG+T A+++P+++ L+ A RA++L + E A Q + K +
Sbjct: 129 MARTGSGKTAAFVIPMIEKLKSHSA-----KFGSRALILSPSRELALQTLKVVKELGRGT 183
Query: 244 RLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 302
L S + GG S + E +++ P ++IATP L + ++ IRYVV DEAD L
Sbjct: 184 DLKSVLLVGGDSLEEQFEYMASNP-DIIIATPGRFLHLKVEMSLDLSSIRYVVFDEADRL 242
Query: 303 FDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 345
F+ GF ++++IL+ L S QT+L +A + + L E
Sbjct: 243 FEMGFATQLTEILHGLPSSR--------QTLLFSATLPKSLVE 277
>gi|90075638|dbj|BAE87499.1| unnamed protein product [Macaca fascicularis]
Length = 457
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 110/207 (53%), Gaps = 15/207 (7%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239
Query: 200 VQMLRRDEALLPM-KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSS------MENG 252
+ E LP K P +++C + E A Q + ++ + DSS + G
Sbjct: 240 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 299
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
G+S K + + M++ATP ++ ++ + VS D RY+ LDEAD + D GF +I
Sbjct: 300 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 359
Query: 313 KILNPLKDSALKSNGQGFQTILVTAAI 339
I + K GQ QT+L +A +
Sbjct: 360 TIFSYFK-------GQ-RQTLLFSATM 378
>gi|187734531|ref|YP_001876643.1| DEAD/DEAH box helicase [Akkermansia muciniphila ATCC BAA-835]
gi|187424583|gb|ACD03862.1| DEAD/DEAH box helicase domain protein [Akkermansia muciniphila ATCC
BAA-835]
Length = 423
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 98/178 (55%), Gaps = 2/178 (1%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V ++F+ELGL A +++ +E + P+ IQ IP +L K ++ + +G+G+T A+ LP
Sbjct: 2 VSTTFRELGLSAPILRQLENLEYKTPTPIQAACIPLLLQNKDLMGLAQTGTGKTAAFALP 61
Query: 199 LVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
L+Q L P + + RA++L T E A Q + + L +++ GGV +
Sbjct: 62 LIQQLSERSGKPPGRRV--RALILSPTRELAAQIHENIRAYARGLHLSTAVIFGGVGYAS 119
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ +L+ATP ++ H+E R VS D + ++LDEAD + D GF P + KI++
Sbjct: 120 QFKELAGGLDILVATPGRLIDHLERRTVSLDGVETLILDEADHMLDMGFAPALKKIVS 177
>gi|385799993|ref|YP_005836397.1| DEAD/DEAH box helicase [Halanaerobium praevalens DSM 2228]
gi|309389357|gb|ADO77237.1| DEAD/DEAH box helicase domain protein [Halanaerobium praevalens DSM
2228]
Length = 529
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 102/198 (51%), Gaps = 16/198 (8%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F EL + E++KAVE+MG + IQ IPAVLNG+ +V + +G+G+T A+ +PL++
Sbjct: 6 FNELNVSDEILKAVEEMGFEETTPIQTNAIPAVLNGQDIVGQAQTGTGKTAAFGIPLLEE 65
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSSKALED 261
+ + +P+AI+LC T E A Q + + + R+ + GG S
Sbjct: 66 MDSENK-------NPQAIILCPTRELAIQVSEELKRLAKYKRRIYTLPVYGGQSIGRQIK 118
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDS 321
+ ++I TP V+ HI + + D+I Y VLDEAD + D GF +I +L + D
Sbjct: 119 ALKKGVQIVIGTPGRVMDHIRRKTLKLDNINYFVLDEADVMLDMGFIDDIETVLRDIPDD 178
Query: 322 ALKSNGQGFQTILVTAAI 339
QT+ +A I
Sbjct: 179 R--------QTLFFSATI 188
>gi|88858341|ref|ZP_01132983.1| putative ATP-dependent RNA helicase (rhlE-like); DEAD-box protein
family protein [Pseudoalteromonas tunicata D2]
gi|88819958|gb|EAR29771.1| putative ATP-dependent RNA helicase (rhlE-like); DEAD-box protein
family protein [Pseudoalteromonas tunicata D2]
Length = 413
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 94/177 (53%), Gaps = 4/177 (2%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
F LGL ++++A+ + G P+ IQ I +L GK V+ + +G+G+T A+ LP++Q
Sbjct: 2 GFAALGLNQQLVQALTECGYDTPTPIQTAAIGEILQGKDVMAGAQTGTGKTAAFALPILQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L A P + R +VL T E A Q F + + L +++ GGVS
Sbjct: 62 RL----AEQPERKGQLRTLVLTPTRELAQQVFASFEKYGQHSELTAALAYGGVSIGEQIK 117
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
A + +++ATP +L H+ V+ +++Y+V DEAD + D GF EI+ IL L
Sbjct: 118 AIKAGVDIMVATPGRLLDHLVKGTVNLSNVQYLVFDEADRMLDMGFIDEINNILRRL 174
>gi|326772300|ref|ZP_08231585.1| ATP-dependent RNA helicase [Actinomyces viscosus C505]
gi|326638433|gb|EGE39334.1| ATP-dependent RNA helicase [Actinomyces viscosus C505]
Length = 540
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 70/195 (35%), Positives = 106/195 (54%), Gaps = 11/195 (5%)
Query: 126 ASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSS 185
AS R S + A ++F ELG+ +++ ++ G P IQ +P L G+ V+
Sbjct: 8 ASHRFASGKTPAAGEATFAELGVDSDLAADLDARGFTAPFPIQAATLPDTLAGRDVLGRG 67
Query: 186 GSGSGRTLAYLLPLVQML-RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 244
+GSG+TLA+ LPLVQ L ++D+A +P HP +VL T E A Q +A+ I AR
Sbjct: 68 RTGSGKTLAFSLPLVQRLAQQDKA----RPGHPIGLVLAPTRELALQ---IAEVIEPLAR 120
Query: 245 ---LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 301
+D + GGVS+K E A + +++A P +L + VS D++ VLDEAD
Sbjct: 121 VVDMDVTTIFGGVSAKPQEKALKAGVDVVVACPGRLLDLMGQGLVSLDEVEITVLDEADH 180
Query: 302 LFDRGFGPEISKILN 316
+ D GF P + +IL
Sbjct: 181 MADLGFLPNVRRILR 195
>gi|170734034|ref|YP_001765981.1| DEAD/DEAH box helicase [Burkholderia cenocepacia MC0-3]
gi|169817276|gb|ACA91859.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
MC0-3]
Length = 486
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 95/177 (53%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL ++KAV ++G P+ IQ IPAVL G ++ + +G+G+T + LP++Q
Sbjct: 2 SFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L A RA++L T E A Q + S +L S++ GGVS D
Sbjct: 62 RLHTFYAEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQID 121
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +++ATP +L H++ + + D+ +VLDEAD + D GF +I ++L L
Sbjct: 122 ALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKL 178
>gi|146278024|ref|YP_001168183.1| DEAD/DEAH box helicase domain-containing protein [Rhodobacter
sphaeroides ATCC 17025]
gi|145556265|gb|ABP70878.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides ATCC
17025]
Length = 507
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 98/177 (55%), Gaps = 4/177 (2%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++ F +L L ++KAV++ G P+ IQ IP L GK V+ + +G+G+T ++ LP+
Sbjct: 1 MTKFSDLALDPRVLKAVQEAGYETPTPIQAQAIPHALEGKDVLGIAQTGTGKTASFTLPM 60
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
+ +L + A M PR++VLC T E A Q + ++L ++ GGVS
Sbjct: 61 ITILGKGRARARM----PRSLVLCPTRELAAQVAENFDIYAKHSKLSKALLIGGVSFTEQ 116
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ + + + +LIATP +L H E + ++ +V+DEAD + D GF P+I +I +
Sbjct: 117 DKLIDRGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFS 173
>gi|348516780|ref|XP_003445915.1| PREDICTED: probable ATP-dependent RNA helicase DDX41-like
[Oreochromis niloticus]
Length = 614
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 111/209 (53%), Gaps = 19/209 (9%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ ++K ++K G+ P+ IQ GIP VL+G+ ++ + +GSG+TL + LP+
Sbjct: 172 IKSFREMKFPPAILKGLKKKGIVHPTPIQIQGIPTVLSGRDMIGIAFTGSGKTLVFTLPI 231
Query: 200 VQMLRRDEALLP-MKPMHPRAIVLCTTEESADQGFHMAKFISHCA--------RLDSSME 250
+ E LP K P +++C + E A Q + ++ +C +L +++
Sbjct: 232 IMFALEQEKRLPFFKREGPYGLIICPSRELARQTHGIIEY--YCKLLEEEGAPQLRTALC 289
Query: 251 NGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPE 310
GG+S K +V + M++ATP ++ ++ + V D RY+ LDEAD + D GF +
Sbjct: 290 IGGMSVKEQMEVVKHGVHMMVATPGRLMDLLQKKMVGLDICRYLALDEADRMIDMGFEED 349
Query: 311 ISKILNPLKDSALKSNGQGFQTILVTAAI 339
I I + K GQ QT+L +A +
Sbjct: 350 IRTIFSYFK-------GQR-QTLLFSATM 370
>gi|284007123|emb|CBA72399.1| ATP-dependent RNA helicase [Arsenophonus nasoniae]
Length = 438
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 99/177 (55%), Gaps = 3/177 (1%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F LGL AE++ A+++ G P+ IQ IPA+L GK ++ S+ +G+G+T ++LP++Q
Sbjct: 9 FNSLGLSAEILSAIKEAGYEKPTSIQQQAIPAILAGKDLLASAQTGTGKTAGFVLPILQH 68
Query: 203 LRRDEALLP-MKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L + ++ KP+ RA++L T E A Q + S RL S + GGVS
Sbjct: 69 LSQTPVVVKGKKPV--RALILAPTRELAAQVGQNVRNYSQFLRLKSLVVFGGVSINPQMM 126
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +L+ATP +L ++ VS + +VLDEAD + D GF +I +IL+ L
Sbjct: 127 KLRGGVDILVATPGRLLDLVQQNAVSLSQVEILVLDEADRMLDMGFIHDIRRILDKL 183
>gi|195381768|ref|XP_002049617.1| GJ21693 [Drosophila virilis]
gi|194144414|gb|EDW60810.1| GJ21693 [Drosophila virilis]
Length = 784
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 112/211 (53%), Gaps = 20/211 (9%)
Query: 138 EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLL 197
E+++SF ++ L +++A+ +G P+ IQ IP L G+ + + +G+G+T AY+L
Sbjct: 154 ELITSFYQMNLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYML 213
Query: 198 PLVQMLRRDEALLPMKPMHPRAI----VLCTTEESADQGFHMAKFISHCARLDSSMENGG 253
P V+ L +P++ +AI VL T E Q + + K + +D + GG
Sbjct: 214 PTVER-------LLYRPLNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTSIDVGLAIGG 266
Query: 254 VSSKALEDVSNAPIGMLIATPSEVLQHIEDR-NVSCDDIRYVVLDEADTLFDRGFGPEIS 312
+ KA E V ++IATP ++ HI++ + S D I ++LDEAD + D F ++
Sbjct: 267 LDVKAQETVLRQNPDIVIATPGRLIDHIKNTPSFSLDSIEVLILDEADRMLDEYFAEQMK 326
Query: 313 KILNPLKDSALKSNGQGFQTILVTAAIAEML 343
+I+N S K+ QT+L +A ++E +
Sbjct: 327 EIIN----SCCKTR----QTMLFSATMSEQV 349
>gi|34495838|ref|NP_900053.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
gi|34101693|gb|AAQ58061.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
Length = 472
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 92/178 (51%), Gaps = 11/178 (6%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F +LGL +++AV G P+ IQ IP VL G ++ ++ +G+G+T + LPL+Q
Sbjct: 5 TFADLGLADPLLRAVADTGYTTPTPIQAQAIPQVLQGGDLLAAAQTGTGKTAGFTLPLLQ 64
Query: 202 MLRRDEALLPMKPMH----PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
+L P H PRA+VL T E A Q + S L S + GGV+
Sbjct: 65 LLM-------CSPSHHAGRPRALVLTPTRELAAQVEESVRTYSKYLPLKSLVMFGGVNIN 117
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
AP+ +L+ATP +L H+ + V + +VLDEAD + D GF +I K+L
Sbjct: 118 PQIKALRAPVDILVATPGRLLDHVGQKTVDLSGVEILVLDEADRMLDMGFIHDIKKVL 175
>gi|410619983|ref|ZP_11330868.1| ATP-dependent RNA helicase rhlE [Glaciecola polaris LMG 21857]
gi|410160438|dbj|GAC35006.1| ATP-dependent RNA helicase rhlE [Glaciecola polaris LMG 21857]
Length = 412
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 72/237 (30%), Positives = 118/237 (49%), Gaps = 15/237 (6%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F++L L E+ +AV ++G P+ IQ + IPA + GK ++ S+ +G+G+T A+LLP+ Q
Sbjct: 2 FEQLDLDDELCRAVAELGYIEPTSIQQLVIPAAMEGKDILASAPTGTGKTAAFLLPVCQF 61
Query: 203 LRRDEALLPMKPM-HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
+ P + + R ++L T E A Q + A +S + + GG++ D
Sbjct: 62 ILD----YPRRGIGSTRILILTPTRELAQQVYQQALELSKYTDIVCGVITGGINYGTDRD 117
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDS 321
+ +L+ATP + +HIE + C DI ++LDEAD + D GF S I+N +
Sbjct: 118 TLERNLDILVATPGRLFEHIEQESFDCRDIECLILDEADRMLDMGF----SSIVNQISAE 173
Query: 322 A-LKSNGQGFQTILVTAAIAEMLGEQLSSLMECLE----RDNAGKVTAMLLEMDQAE 373
A + F L A I+ + L+ +E LE R GK+ L D A+
Sbjct: 174 ARWRKQSMLFSATLEGAGISRFAKDILNEPVE-LEAAPSRKEQGKIHQWLHLADDAK 229
>gi|302766257|ref|XP_002966549.1| hypothetical protein SELMODRAFT_230807 [Selaginella moellendorffii]
gi|300165969|gb|EFJ32576.1| hypothetical protein SELMODRAFT_230807 [Selaginella moellendorffii]
Length = 581
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 110/187 (58%), Gaps = 7/187 (3%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+++GL +++ +++ G+ P+ IQ G+PA+L+G+ ++ + +GSG+TLA++LPL
Sbjct: 142 IRSFKDMGLPKSVLRKLKEKGVKHPTPIQVQGLPAILSGRDMIGVAFTGSGKTLAFVLPL 201
Query: 200 VQMLRRDEALLPMKPMH-PRAIVLCTTEESADQGFH-MAKFI-----SHCARLDSSMENG 252
+ + ++E +K P ++LC + E A Q F + +F+ S C L + + G
Sbjct: 202 IMLALKEEERSRLKGGEGPVGLILCPSRELAKQTFDVIEEFVSMVNSSRCCHLRAMLCIG 261
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
G ++ + + +++ATP + +E + ++ + +Y+ LDEAD L D GF +I
Sbjct: 262 GTGMRSQLEAIRRGVHIVVATPGRLNDMLEKKKMNLERCKYLTLDEADRLCDSGFEDDIR 321
Query: 313 KILNPLK 319
K+++ LK
Sbjct: 322 KVMDHLK 328
>gi|77463091|ref|YP_352595.1| ATP-dependent helicase, DEAD-box [Rhodobacter sphaeroides 2.4.1]
gi|77387509|gb|ABA78694.1| ATP-dependent helicase, DEAD-box [Rhodobacter sphaeroides 2.4.1]
Length = 518
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 99/178 (55%), Gaps = 4/178 (2%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
+++ F +L L ++KAV++ G P+ IQ IP L GK V+ + +G+G+T ++ LP
Sbjct: 2 LMTKFSDLALDPRVLKAVQEAGYETPTPIQAQAIPHALEGKDVLGIAQTGTGKTASFTLP 61
Query: 199 LVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
++ +L + A M PR++VLC T E A Q + ++L ++ GGVS
Sbjct: 62 MITILGKGRARARM----PRSLVLCPTRELAAQVAENFDIYAKHSKLSKALLIGGVSFTE 117
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ + + + +LIATP +L H E + ++ +V+DEAD + D GF P+I +I +
Sbjct: 118 QDKLIDRGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFS 175
>gi|389638792|ref|XP_003717029.1| ATP-dependent RNA helicase HAS1 [Magnaporthe oryzae 70-15]
gi|152032523|sp|A4R8B5.2|HAS1_MAGO7 RecName: Full=ATP-dependent RNA helicase HAS1
gi|351642848|gb|EHA50710.1| ATP-dependent RNA helicase HAS1 [Magnaporthe oryzae 70-15]
Length = 587
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 103/178 (57%), Gaps = 5/178 (2%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F EL L +KA+E+MG +EIQ GIP +L GK V+ ++ +GSG+TLA+L+P V+
Sbjct: 113 AFSELNLSENTMKAIEEMGFTKMTEIQRRGIPPLLAGKDVLGAAKTGSGKTLAFLIPAVE 172
Query: 202 MLRRDEALLPMKPMHPRAIVLCT-TEESADQGFHMAKFISHCARLDSSMENGGVSSKALE 260
MLR L KP + +++ + T E A Q F +A+ + + GG + +A
Sbjct: 173 MLRS----LKFKPRNGTGVIVVSPTRELALQIFGVARDLMKHHSQTYGIVIGGANRRAEA 228
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ + + +LIATP +L H+++ ++R +V+DEAD + + GF E+ +I+ L
Sbjct: 229 EKLSKGVNLLIATPGRLLDHLQNTPFVFKNLRSLVIDEADRILEIGFEDEMRQIIKIL 286
>gi|429208395|ref|ZP_19199647.1| ATP-dependent RNA helicase [Rhodobacter sp. AKP1]
gi|428188650|gb|EKX57210.1| ATP-dependent RNA helicase [Rhodobacter sp. AKP1]
Length = 508
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 98/177 (55%), Gaps = 4/177 (2%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++ F +L L ++KAV++ G P+ IQ IP L GK V+ + +G+G+T ++ LP+
Sbjct: 1 MTKFSDLALDPRVLKAVQEAGYETPTPIQAQAIPHALEGKDVLGIAQTGTGKTASFTLPM 60
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
+ +L + A M PR++VLC T E A Q + ++L ++ GGVS
Sbjct: 61 ITILGKGRARARM----PRSLVLCPTRELAAQVAENFDIYAKHSKLSKALLIGGVSFTEQ 116
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ + + + +LIATP +L H E + ++ +V+DEAD + D GF P+I +I +
Sbjct: 117 DKLIDRGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFS 173
>gi|386283896|ref|ZP_10061119.1| dead/deah box helicase domain-containing protein [Sulfurovum sp.
AR]
gi|385344799|gb|EIF51512.1| dead/deah box helicase domain-containing protein [Sulfurovum sp.
AR]
Length = 445
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 116/222 (52%), Gaps = 14/222 (6%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
S LGL +E++KA+ + G + IQ IPA+ G+ ++ + +G+G+T + LP++Q
Sbjct: 2 SLATLGLSSEILKALNEKGYESATPIQKALIPAMFTGRDIMAGAQTGTGKTAGFSLPILQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L + +P+A++L T E A Q + L S + GG + + +
Sbjct: 62 ELSKH---FVEGQHYPKAVILVPTRELAKQVHASIEAYGKYLPLKSIVLYGGANLTSQAN 118
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDS 321
A I +++AT +L+HI +N++ + + Y+VLDEADT+ D GF E+ KIL L D
Sbjct: 119 RLKAGIDIIVATSGRLLEHIGQKNINLESVAYLVLDEADTILDMGFVHEVGKILQHLPDK 178
Query: 322 ALKSNGQGFQTILVTAAIA---EMLGEQLSSLMECLERDNAG 360
Q +L++A ++ + L EQ+ + +E D+ G
Sbjct: 179 R--------QNVLISATLSGSVKRLAEQILQKPKLIEVDSMG 212
>gi|146329248|ref|YP_001209905.1| ATP-dependent RNA helicase [Dichelobacter nodosus VCS1703A]
gi|146232718|gb|ABQ13696.1| ATP-dependent RNA helicase [Dichelobacter nodosus VCS1703A]
Length = 442
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 111/217 (51%), Gaps = 13/217 (5%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
++F ELGL ++++ + + G P+ IQ IP L G+ ++LS+ +GSG+T A++LP++
Sbjct: 3 NTFSELGLSTQILRTISRHGYEKPTPIQARAIPLALQGRDLLLSAQTGSGKTAAFVLPIL 62
Query: 201 QMLRRDEALLPMKPMHPRAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSSKAL 259
Q L A P K PRA+++ T E A Q + ++ L S GG + +
Sbjct: 63 QQL----AAEPTKSKLPRALIVIPTRELAQQVQDSVFQYSREFKELYSITLVGGTAYQKQ 118
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319
+ +++ATP +L H+ + ++ IRY+VLDEAD + D GF ++ I
Sbjct: 119 IRALKKGVSIVVATPGRLLDHVREGHLDLSQIRYLVLDEADRMLDMGFSDDMHAI----- 173
Query: 320 DSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLER 356
+K Q QTI+ +A +G+ + E+
Sbjct: 174 ---IKQCPQNRQTIMSSATWDGNVGKIAAGFTHNAEK 207
>gi|206559326|ref|YP_002230087.1| putative ATP-dependent RNA helicase 1 [Burkholderia cenocepacia
J2315]
gi|421868477|ref|ZP_16300125.1| ATP-dependent RNA helicase RhlE [Burkholderia cenocepacia H111]
gi|198035364|emb|CAR51239.1| putative ATP-dependent RNA helicase 1 [Burkholderia cenocepacia
J2315]
gi|358071499|emb|CCE51003.1| ATP-dependent RNA helicase RhlE [Burkholderia cenocepacia H111]
Length = 477
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 95/177 (53%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL ++KAV ++G P+ IQ IPAVL G ++ + +G+G+T + LP++Q
Sbjct: 2 SFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L A RA++L T E A Q + S +L S++ GGVS D
Sbjct: 62 RLHTFYAEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQID 121
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +++ATP +L H++ + + D+ +VLDEAD + D GF +I ++L L
Sbjct: 122 ALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKL 178
>gi|187479233|ref|YP_787258.1| ATP-dependent RNA helicase [Bordetella avium 197N]
gi|115423820|emb|CAJ50371.1| putative ATP-dependent RNA helicase [Bordetella avium 197N]
Length = 477
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 106/190 (55%), Gaps = 6/190 (3%)
Query: 132 SSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGR 191
S+ +AE ++ F + GL ++K++ + G P+ IQ IP V G+ V+ ++ +G+G+
Sbjct: 7 SAAPSAEALT-FADFGLHPLLLKSIAETGYTSPTPIQAQAIPVVAEGRDVMGAAQTGTGK 65
Query: 192 TLAYLLPLVQMLR--RDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSS 248
T A+ LP++ L + + P + HP RA++L T E ADQ + K S L S+
Sbjct: 66 TAAFTLPILHRLMPLANSSASPAR--HPVRALILTPTRELADQVYENVKRYSLHTPLRSA 123
Query: 249 MENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFG 308
+ GGV ++ +L+ATP +L H+E +NV+ + +VLDEAD + D GF
Sbjct: 124 VVFGGVDIGPQKEALRQGCEVLVATPGRLLDHVEQKNVNLSQVGILVLDEADRMLDMGFL 183
Query: 309 PEISKILNPL 318
P++ +I+ L
Sbjct: 184 PDLERIIRLL 193
>gi|115450203|ref|NP_001048702.1| Os03g0108600 [Oryza sativa Japonica Group]
gi|113547173|dbj|BAF10616.1| Os03g0108600, partial [Oryza sativa Japonica Group]
Length = 653
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 90/165 (54%), Gaps = 3/165 (1%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+E+G E++ A+ G PS IQ + VL GKS ++ SGSG+TLAYL P+VQ
Sbjct: 253 SFKEIGCSDEILGALRSFGFPRPSHIQAMAYRPVLEGKSCIIGDQSGSGKTLAYLCPVVQ 312
Query: 202 MLRRD--EALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR-LDSSMENGGVSSKA 258
LR++ E L P +PR +VL T E A Q + + IS S + GG K
Sbjct: 313 NLRKEEVEGLHRSSPRNPRVVVLTPTAELASQVLNNCRSISKSGVPFRSMVATGGFRQKT 372
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 303
+ + + +LIATP L +++ V +++R VVLDE D L+
Sbjct: 373 QLESLDQELDVLIATPGRFLYLLQEGFVQLNNLRCVVLDEVDILY 417
>gi|332557965|ref|ZP_08412287.1| ATP-dependent helicase, DEAD-box [Rhodobacter sphaeroides WS8N]
gi|332275677|gb|EGJ20992.1| ATP-dependent helicase, DEAD-box [Rhodobacter sphaeroides WS8N]
Length = 516
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 98/177 (55%), Gaps = 4/177 (2%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++ F +L L ++KAV++ G P+ IQ IP L GK V+ + +G+G+T ++ LP+
Sbjct: 1 MTKFSDLALDPRVLKAVQEAGYETPTPIQAQAIPHALEGKDVLGIAQTGTGKTASFTLPM 60
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
+ +L + A M PR++VLC T E A Q + ++L ++ GGVS
Sbjct: 61 ITILGKGRARARM----PRSLVLCPTRELAAQVAENFDIYAKHSKLSKALLIGGVSFTEQ 116
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ + + + +LIATP +L H E + ++ +V+DEAD + D GF P+I +I +
Sbjct: 117 DKLIDRGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFS 173
>gi|114771836|ref|ZP_01449229.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium
HTCC2255]
gi|114547652|gb|EAU50543.1| ATP-dependent RNA helicase RhlE [alpha proteobacterium HTCC2255]
Length = 461
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 95/176 (53%), Gaps = 4/176 (2%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ F +LGL +++KA+ +G P+ IQ IP L G+ V+ + +G+G+T + LP+
Sbjct: 1 MKKFIDLGLSPKVMKAINDVGYDTPTPIQSEAIPHALEGRDVLGIAQTGTGKTAGFTLPM 60
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
+ L R A M PR++VL T E A Q + + +LD ++ GGVS K
Sbjct: 61 IHKLARGRARARM----PRSLVLAPTRELAAQVAENFEQYAKYVKLDMALLIGGVSFKDQ 116
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
+ + + + +LIATP +L H E + I +V+DEAD + D GF P+I +I
Sbjct: 117 DRLIDRGVDVLIATPGRLLDHFERGKLLLTGIEIMVVDEADRMLDMGFIPDIERIF 172
>gi|198462641|ref|XP_001352498.2| GA16838 [Drosophila pseudoobscura pseudoobscura]
gi|198150914|gb|EAL29995.2| GA16838 [Drosophila pseudoobscura pseudoobscura]
Length = 852
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 96/176 (54%), Gaps = 5/176 (2%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
FQ +GL E+IK + K G VP+ IQ IP +L G+ VV + +GSG+T +L+PL +
Sbjct: 41 FQSMGLGFELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEK 100
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDV 262
L+R + P K RA++L T E A Q + K + L + + GG S +
Sbjct: 101 LQRRD---PTKGA--RALILSPTRELAVQTYKFIKELGRFMELKTILVLGGDSMDSQFSA 155
Query: 263 SNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +++ATP L + ++ + I YVV DEAD LF+ GFG ++++ L+ L
Sbjct: 156 IHTCPDVIVATPGRFLHLCVEMDLKLNSIDYVVFDEADRLFEMGFGEQLNETLHRL 211
>gi|422322840|ref|ZP_16403880.1| ATP-dependent RNA helicase [Achromobacter xylosoxidans C54]
gi|317402151|gb|EFV82742.1| ATP-dependent RNA helicase [Achromobacter xylosoxidans C54]
Length = 481
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 96/177 (54%), Gaps = 1/177 (0%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F + GL +++++ + G P+ IQ IP V+ G+ V+ ++ +G+G+T A+ LP++
Sbjct: 20 FSDFGLHPLLLQSIAETGYTTPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTLPILHR 79
Query: 203 LRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L HP RA++L T E ADQ + K S L S++ GGV ++
Sbjct: 80 LMPLANTSASPARHPVRALILTPTRELADQVYESVKRYSKQTPLRSAVVFGGVDIGPQKE 139
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+L+ATP +L H+E +NV+ + +VLDEAD + D GF P++ +I+ L
Sbjct: 140 ALRRGCEVLVATPGRLLDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLERIIRLL 196
>gi|407926601|gb|EKG19568.1| RNA helicase ATP-dependent DEAD-box conserved site [Macrophomina
phaseolina MS6]
Length = 913
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 107/198 (54%), Gaps = 10/198 (5%)
Query: 125 IASEREKSSGSNAEVV---SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSV 181
+A+ KSS V FQ +GL A ++KA+ + G VP+ IQ IP VL+G+ V
Sbjct: 70 LAAANRKSSNLKGRTVKKGGGFQAMGLNANVLKAITRKGFSVPTPIQRKTIPLVLDGQDV 129
Query: 182 VLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 241
V + +GSG+T A+++P+++ L+ A + RAI++ + E A Q + K +
Sbjct: 130 VGMARTGSGKTAAFVIPMIERLKAHSA-----KVGARAIIMSPSRELALQTLKVVKELGR 184
Query: 242 CARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 300
L + + GG S D+++ P ++IATP L + + +RYVV DEAD
Sbjct: 185 GTDLRTVLLVGGDSLEDQFADMNSNP-DIIIATPGRFLHLKVEMELDLSTVRYVVFDEAD 243
Query: 301 TLFDRGFGPEISKILNPL 318
LF+ GF ++++IL+ L
Sbjct: 244 RLFEMGFAAQLTEILHAL 261
>gi|107023606|ref|YP_621933.1| DEAD/DEAH box helicase [Burkholderia cenocepacia AU 1054]
gi|116690690|ref|YP_836313.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
cenocepacia HI2424]
gi|105893795|gb|ABF76960.1| DEAD/DEAH box helicase-like protein [Burkholderia cenocepacia AU
1054]
gi|116648779|gb|ABK09420.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
HI2424]
Length = 486
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 95/177 (53%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL ++KAV ++G P+ IQ IPAVL G ++ + +G+G+T + LP++Q
Sbjct: 2 SFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L A RA++L T E A Q + S +L S++ GGVS D
Sbjct: 62 RLHTFYAEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQID 121
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +++ATP +L H++ + + D+ +VLDEAD + D GF +I ++L L
Sbjct: 122 ALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKL 178
>gi|410612255|ref|ZP_11323335.1| ATP-dependent RNA helicase RhlE [Glaciecola psychrophila 170]
gi|410168256|dbj|GAC37224.1| ATP-dependent RNA helicase RhlE [Glaciecola psychrophila 170]
Length = 410
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 129/247 (52%), Gaps = 25/247 (10%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF L L + A++ +G +P+ IQ IPA+L+GK ++ + +G+G+T A+ LP++Q
Sbjct: 2 SFSSLALDKSLTDAIKALGYEIPTPIQQQAIPAILDGKDIMAGAQTGTGKTAAFALPILQ 61
Query: 202 -MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHC--ARLDSSMENGGVSSKA 258
+++ +AL P+ RA+VL T E A Q + F+ + +L ++ GGVS
Sbjct: 62 QLIKYADALRPI-----RALVLTPTRELAQQVYK--NFVGYAENTQLKVAVAYGGVSINP 114
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +LIATP +L I NV ++ +V DEAD + D GF EI +IL+ L
Sbjct: 115 QISALERGVDILIATPGRLLDLIAKGNVDLSQLQTIVFDEADRMLDMGFKDEIDQILSRL 174
Query: 319 KDSALKSNGQGFQTILVTA----AIAEMLGEQLSS--LMECLERDN-AGKVTAMLLEMDQ 371
+ QT+L +A AI ++ L++ L+E ER+ A +V ++ +D
Sbjct: 175 PNKR--------QTLLFSATFDDAIFKLSKTLLNNPVLIEVSERNTAAAQVEQLVYTVDN 226
Query: 372 AEVFDLT 378
+LT
Sbjct: 227 DRKRELT 233
>gi|195170534|ref|XP_002026067.1| GL16100 [Drosophila persimilis]
gi|194110947|gb|EDW32990.1| GL16100 [Drosophila persimilis]
Length = 854
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 96/176 (54%), Gaps = 5/176 (2%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
FQ +GL E+IK + K G VP+ IQ IP +L G+ VV + +GSG+T +L+PL +
Sbjct: 41 FQSMGLGFELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEK 100
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDV 262
L+R + P K RA++L T E A Q + K + L + + GG S +
Sbjct: 101 LQRRD---PTKGA--RALILSPTRELAVQTYKFIKELGRFMELKTILVLGGDSMDSQFSA 155
Query: 263 SNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +++ATP L + ++ + I YVV DEAD LF+ GFG ++++ L+ L
Sbjct: 156 IHTCPDVIVATPGRFLHLCVEMDLKLNSIDYVVFDEADRLFEMGFGEQLNETLHRL 211
>gi|440476300|gb|ELQ44912.1| ATP-dependent RNA helicase HAS1 [Magnaporthe oryzae Y34]
Length = 864
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 103/178 (57%), Gaps = 5/178 (2%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F EL L +KA+E+MG +EIQ GIP +L GK V+ ++ +GSG+TLA+L+P V+
Sbjct: 113 AFSELNLSENTMKAIEEMGFTKMTEIQRRGIPPLLAGKDVLGAAKTGSGKTLAFLIPAVE 172
Query: 202 MLRRDEALLPMKPMHPRAIVLCT-TEESADQGFHMAKFISHCARLDSSMENGGVSSKALE 260
MLR L KP + +++ + T E A Q F +A+ + + GG + +A
Sbjct: 173 MLRS----LKFKPRNGTGVIVVSPTRELALQIFGVARDLMKHHSQTYGIVIGGANRRAEA 228
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ + + +LIATP +L H+++ ++R +V+DEAD + + GF E+ +I+ L
Sbjct: 229 EKLSKGVNLLIATPGRLLDHLQNTPFVFKNLRSLVIDEADRILEIGFEDEMRQIIKIL 286
>gi|195385611|ref|XP_002051498.1| vas [Drosophila virilis]
gi|21361025|gb|AAM49782.1|AF513908_1 DEAD-box RNA helicase [Drosophila virilis]
gi|194147955|gb|EDW63653.1| vas [Drosophila virilis]
Length = 625
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 103/187 (55%), Gaps = 3/187 (1%)
Query: 131 KSSGSNA-EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGS 189
K +G N + + +F+ L+ ++ V K G VP+ IQ V IP + G+ ++ + +GS
Sbjct: 200 KVTGENVPQPIKNFESARLRGIVLDNVVKSGYVVPTPIQKVSIPVIAEGRDLMACAQTGS 259
Query: 190 GRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSM 249
G+T A+LLP++ + + L + P+A+++ T E A Q F+ A+ S+ L S+
Sbjct: 260 GKTAAFLLPILNNILDESHDLEIGK--PQAVIVSPTRELAIQIFNEARKFSYTTYLKISI 317
Query: 250 ENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGP 309
GG S K + +LIATP +L ++ ++ DD R++VLDEAD + D GF
Sbjct: 318 VYGGTSFKYQNECITKGCHVLIATPGRLLDFVDRTFITFDDTRFIVLDEADRMLDMGFSD 377
Query: 310 EISKILN 316
+ KI++
Sbjct: 378 SMRKIMH 384
>gi|218676562|ref|YP_002395381.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
gi|218324830|emb|CAV26551.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
Length = 423
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 98/185 (52%), Gaps = 2/185 (1%)
Query: 137 AEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYL 196
+E SF +LGL ++ + ++ P+ +Q IP VL GK V+ + +G+G+T A+
Sbjct: 2 SESTKSFNQLGLSEHLLATLSELNFTAPTSVQEQAIPLVLEGKDVLAGAQTGTGKTAAFG 61
Query: 197 LPLVQ-MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS 255
LP++Q ++ + ++P P RA+VL T E A Q F + + + GGVS
Sbjct: 62 LPIIQRLIETKDNVIP-NPKLVRALVLVPTRELAQQVFDNVTSYAKGTDIKVVVAYGGVS 120
Query: 256 SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
K + +L+ATP ++ H+ +N+ +VLDEAD + D GF P+I +IL
Sbjct: 121 MKVQTENLRGGADILVATPGRLIDHMFTKNIMLSHTEVLVLDEADRMLDMGFMPDIKRIL 180
Query: 316 NPLKD 320
+ + +
Sbjct: 181 SRMNE 185
>gi|311104225|ref|YP_003977078.1| ATP-dependent RNA helicase RhlE 2 [Achromobacter xylosoxidans A8]
gi|310758914|gb|ADP14363.1| ATP-dependent RNA helicase RhlE 2 [Achromobacter xylosoxidans A8]
Length = 493
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 97/178 (54%), Gaps = 1/178 (0%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F + GL +++++ + G P+ IQ IP V+ G+ V+ ++ +G+G+T A+ LP++
Sbjct: 18 TFTDFGLHPLLLQSIAETGYTTPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTLPILH 77
Query: 202 MLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE 260
L HP RA++L T E ADQ + K S L S++ GGV +
Sbjct: 78 RLMPLANTSASPARHPVRALILTPTRELADQVYESVKRYSKQTPLRSAVVFGGVDIGPQK 137
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +L+ATP +L H+E +NV+ + +VLDEAD + D GF P++ +I+ L
Sbjct: 138 EALRRGCEVLVATPGRLLDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLERIIRLL 195
>gi|218191936|gb|EEC74363.1| hypothetical protein OsI_09674 [Oryza sativa Indica Group]
Length = 620
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 90/165 (54%), Gaps = 3/165 (1%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+E+G E++ A+ G PS IQ + VL GKS ++ SGSG+TLAYL P+VQ
Sbjct: 220 SFKEIGCSDEILGALRSFGFPRPSHIQAMAYRPVLEGKSCIIGDQSGSGKTLAYLCPVVQ 279
Query: 202 MLRRD--EALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR-LDSSMENGGVSSKA 258
LR++ E L P +PR +VL T E A Q + + IS S + GG K
Sbjct: 280 NLRKEEVEGLHRSSPRNPRVVVLTPTAELASQVLNNCRSISKSGVPFRSMVATGGFRQKT 339
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 303
+ + + +LIATP L +++ V +++R VVLDE D L+
Sbjct: 340 QLESLDQELDVLIATPGRFLYLLQEGFVQLNNLRCVVLDEVDILY 384
>gi|444357741|ref|ZP_21159253.1| DEAD/DEAH box helicase, partial [Burkholderia cenocepacia BC7]
gi|443605729|gb|ELT73559.1| DEAD/DEAH box helicase, partial [Burkholderia cenocepacia BC7]
Length = 403
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 95/177 (53%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL ++KAV ++G P+ IQ IPAVL G ++ + +G+G+T + LP++Q
Sbjct: 2 SFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L A RA++L T E A Q + S +L S++ GGVS D
Sbjct: 62 RLHTFYAEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQID 121
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +++ATP +L H++ + + D+ +VLDEAD + D GF +I ++L L
Sbjct: 122 ALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKL 178
>gi|126461963|ref|YP_001043077.1| DEAD/DEAH box helicase [Rhodobacter sphaeroides ATCC 17029]
gi|126103627|gb|ABN76305.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides ATCC
17029]
Length = 516
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 98/177 (55%), Gaps = 4/177 (2%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++ F +L L ++KAV++ G P+ IQ IP L GK V+ + +G+G+T ++ LP+
Sbjct: 1 MTKFSDLALDPRVLKAVQEAGYETPTPIQAQAIPHALEGKDVLGIAQTGTGKTASFTLPM 60
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
+ +L + A M PR++VLC T E A Q + ++L ++ GGVS
Sbjct: 61 ITILGKGRARARM----PRSLVLCPTRELAAQVAENFDIYAKHSKLSKALLIGGVSFTEQ 116
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ + + + +LIATP +L H E + ++ +V+DEAD + D GF P+I +I +
Sbjct: 117 DKLIDRGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFS 173
>gi|312884016|ref|ZP_07743733.1| ATP-dependent RNA helicase SrmB [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309368474|gb|EFP96009.1| ATP-dependent RNA helicase SrmB [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 407
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 100/177 (56%), Gaps = 5/177 (2%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F EL L +++ A+++MG P++IQ IP L+G+ V+ S+ +G+G+T A++LP
Sbjct: 1 MIKNFAELDLDPDLLLAIDEMGYQRPTQIQAEAIPQALDGRDVLASAPTGTGKTAAFVLP 60
Query: 199 LVQMLRRDEALLPMK-PMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
+Q L+ P K P R ++L T E A Q A+ ++ RL+ GGV +
Sbjct: 61 ALQFLQD----FPRKQPGPARILILTPTRELAMQVAEQARALAKHTRLNIFTITGGVQYQ 116
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
D+ +++ATP ++++IE C I +++LDEAD + D GF P + ++
Sbjct: 117 EHADILATTQDIVVATPGRLMEYIEAERFDCRAIEWLILDEADRMLDMGFAPTVDRL 173
>gi|113866560|ref|YP_725049.1| ATP-dependent RNA helicase [Ralstonia eutropha H16]
gi|113525336|emb|CAJ91681.1| ATP-dependent RNA helicase [Ralstonia eutropha H16]
Length = 520
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 96/183 (52%), Gaps = 7/183 (3%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF ELGL ++++AV + G P+ IQ IPA+L G ++ + +G+G+T + LP++Q
Sbjct: 2 SFSELGLSDKIVRAVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPMLQ 61
Query: 202 MLRRDEALLPMKPMHP-----RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS- 255
+L A P RA+VL T E A Q + RL S + GGV
Sbjct: 62 LLSDSAARGANGAQRPARLPVRALVLTPTRELAAQVEESVRNYGKYLRLRSMVMFGGVGI 121
Query: 256 SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
+ +E + + +++ATP +L H+ R + + +VLDEAD + D GF +I KIL
Sbjct: 122 NPQIEQLKRG-VEIVVATPGRLLDHVSQRTIDLSQVELLVLDEADRMLDMGFIHDIRKIL 180
Query: 316 NPL 318
N L
Sbjct: 181 NVL 183
>gi|143456346|sp|Q0DVX2.2|RH50_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 50
gi|108705771|gb|ABF93566.1| DEAD/DEAH box helicase, putative, expressed [Oryza sativa Japonica
Group]
gi|215686822|dbj|BAG89672.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222624050|gb|EEE58182.1| hypothetical protein OsJ_09113 [Oryza sativa Japonica Group]
Length = 641
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 90/165 (54%), Gaps = 3/165 (1%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+E+G E++ A+ G PS IQ + VL GKS ++ SGSG+TLAYL P+VQ
Sbjct: 241 SFKEIGCSDEILGALRSFGFPRPSHIQAMAYRPVLEGKSCIIGDQSGSGKTLAYLCPVVQ 300
Query: 202 MLRRD--EALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR-LDSSMENGGVSSKA 258
LR++ E L P +PR +VL T E A Q + + IS S + GG K
Sbjct: 301 NLRKEEVEGLHRSSPRNPRVVVLTPTAELASQVLNNCRSISKSGVPFRSMVATGGFRQKT 360
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 303
+ + + +LIATP L +++ V +++R VVLDE D L+
Sbjct: 361 QLESLDQELDVLIATPGRFLYLLQEGFVQLNNLRCVVLDEVDILY 405
>gi|444723055|gb|ELW63720.1| ATP-dependent RNA helicase DDX54 [Tupaia chinensis]
Length = 937
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 115/230 (50%), Gaps = 20/230 (8%)
Query: 116 QPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAV 175
+P+ +++ ++++K SG FQ +GL + K + K G VP+ IQ IP +
Sbjct: 78 EPDTREMVRAQNKKKKKSGG-------FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVI 130
Query: 176 LNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHM 235
L+GK VV + +GSG+T +LLP+ + L+ A RA++L T E A Q
Sbjct: 131 LDGKDVVAMARTGSGKTACFLLPMFERLKTRSA-----QTGARALILSPTRELALQTLKF 185
Query: 236 AKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 295
K + L +++ GG + + ++IATP ++ + N+ + YVV
Sbjct: 186 TKELGKFTGLKTALILGGDKMEDQFAALHENPDIIIATPGRLVHVAVEMNLKLQSVEYVV 245
Query: 296 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 345
DEAD LF+ GF ++ +IL+ L G QT+L +A + +ML E
Sbjct: 246 FDEADRLFEMGFAEQLQEILSRLPG--------GHQTVLFSATLPKMLVE 287
>gi|444377151|ref|ZP_21176386.1| ATP-dependent RNA helicase [Enterovibrio sp. AK16]
gi|443678828|gb|ELT85493.1| ATP-dependent RNA helicase [Enterovibrio sp. AK16]
Length = 441
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 105/198 (53%), Gaps = 12/198 (6%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F++LGL ++K +E G P+++Q IP V GK ++ SS +GSG+TLA+LLP +Q
Sbjct: 3 FEDLGLDKRLLKTMELWGFSTPTDVQASAIPVVCAGKDLLASSKTGSGKTLAFLLPALQR 62
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGF-HMAKFISHCARLDSSMENGGVSSKALED 261
+ R +A PR +VL T E A Q + + K ++ + G + ++
Sbjct: 63 VMRGKAF---SRSGPRVVVLAPTRELAKQVYGELRKLLAGTQYKGMLILGGENFNDQAKE 119
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDS 321
P ++ATP + H+E R+++ + + ++LDEAD + D GF P++ I N
Sbjct: 120 FRKDP-AFIVATPGRLADHLEHRHLTLEGLELLILDEADRMLDLGFAPQLEAINNA---- 174
Query: 322 ALKSNGQGFQTILVTAAI 339
+N + QT++ +A +
Sbjct: 175 ---ANHRRRQTLMFSATL 189
>gi|333926166|ref|YP_004499745.1| DEAD/DEAH box helicase [Serratia sp. AS12]
gi|333931119|ref|YP_004504697.1| DEAD/DEAH box helicase domain-containing protein [Serratia
plymuthica AS9]
gi|386327989|ref|YP_006024159.1| DEAD/DEAH box helicase [Serratia sp. AS13]
gi|333472726|gb|AEF44436.1| DEAD/DEAH box helicase domain protein [Serratia plymuthica AS9]
gi|333490226|gb|AEF49388.1| DEAD/DEAH box helicase domain protein [Serratia sp. AS12]
gi|333960322|gb|AEG27095.1| DEAD/DEAH box helicase domain protein [Serratia sp. AS13]
Length = 454
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 66/179 (36%), Positives = 101/179 (56%), Gaps = 5/179 (2%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL AE+++AVE+ G P+ IQ IP VL G+ ++ S+ +G+G+T + LPL+Q
Sbjct: 2 SFETLGLSAEILRAVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 202 ML-RRDEALLPMKPMHPRAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSSKAL 259
+L + D A+ +P+ RA++L T E A Q G ++ + H RL S + GGVS
Sbjct: 62 LLSKHDHAVKGRRPV--RALILTPTRELAAQIGENVEAYSKHL-RLRSLVVFGGVSINPQ 118
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +L+ATP +L V I +VLDEAD + D GF +I ++L L
Sbjct: 119 MMKLRGGVDILVATPGRLLDLEHQHAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKL 177
>gi|33598065|ref|NP_885708.1| ATP-dependent RNA helicase [Bordetella parapertussis 12822]
gi|33566623|emb|CAE38832.1| putative ATP-dependent RNA helicase [Bordetella parapertussis]
Length = 477
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 103/193 (53%), Gaps = 5/193 (2%)
Query: 131 KSSGSNAEVVS----SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSG 186
+S+ S+A V +F + GL ++K++ G P+ IQ IP V+ G+ V+ ++
Sbjct: 3 ESTSSDAPVTDAPTRTFADFGLHPLLLKSIADTGYTNPTPIQAQAIPVVVEGRDVMGAAQ 62
Query: 187 SGSGRTLAYLLPLVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARL 245
+G+G+T A+ LP++ L HP RA++L T E ADQ + K S L
Sbjct: 63 TGTGKTAAFTLPILHRLMPLANTSASPARHPVRALILTPTRELADQVYESVKRYSLHTPL 122
Query: 246 DSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDR 305
S++ GGV ++ +L+ATP +L H+E +NV+ + +VLDEAD + D
Sbjct: 123 RSAVVFGGVDIGPQKEALRRGCEVLVATPGRLLDHVEQKNVNLSQVGILVLDEADRMLDM 182
Query: 306 GFGPEISKILNPL 318
GF P++ +I+ L
Sbjct: 183 GFLPDLERIIRLL 195
>gi|238753347|ref|ZP_04614710.1| ATP-dependent RNA helicase rhlE [Yersinia ruckeri ATCC 29473]
gi|238708300|gb|EEQ00655.1| ATP-dependent RNA helicase rhlE [Yersinia ruckeri ATCC 29473]
Length = 453
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 97/178 (54%), Gaps = 3/178 (1%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL A++++A+E+ G VP+ IQ IP VL G+ ++ S+ +G+G+T + LPL+Q
Sbjct: 2 SFDSLGLNADILRAIEEQGYLVPTPIQRQAIPVVLQGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 202 MLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE 260
+L +E P+K P RA++L T E A Q + S +L S + GGVS
Sbjct: 62 IL--NENAQPIKGRRPVRALILTPTRELAAQIGENVEQYSKYLKLRSLVVFGGVSINPQM 119
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +L+ATP +L V I +VLDEAD + D GF +I ++L L
Sbjct: 120 MKLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKL 177
>gi|167625497|ref|YP_001675791.1| DEAD/DEAH box helicase [Shewanella halifaxensis HAW-EB4]
gi|167355519|gb|ABZ78132.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
HAW-EB4]
Length = 492
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 66/174 (37%), Positives = 93/174 (53%), Gaps = 3/174 (1%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL A+++KAV G PS IQ IPAVL GK V+ ++ +G+G+T + LPL++
Sbjct: 2 SFASLGLSAQILKAVANKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLE 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
+L + P K + RA+VL T E A Q + L S++ GGV
Sbjct: 62 LLSKGTK-APAKQV--RALVLTPTRELAAQIGESVEVYGQFLPLKSAVIFGGVGIGPQIT 118
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
N + +L+ATP +L R VS + +VLDEAD + D GF +I KIL
Sbjct: 119 KLNRGVDILVATPGRLLDLYNQRAVSFSQLEVLVLDEADRMLDMGFIHDIKKIL 172
>gi|444372413|ref|ZP_21171888.1| DEAD/DEAH box helicase, partial [Burkholderia cenocepacia
K56-2Valvano]
gi|443593626|gb|ELT62346.1| DEAD/DEAH box helicase, partial [Burkholderia cenocepacia
K56-2Valvano]
Length = 416
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 95/177 (53%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL ++KAV ++G P+ IQ IPAVL G ++ + +G+G+T + LP++Q
Sbjct: 2 SFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L A RA++L T E A Q + S +L S++ GGVS D
Sbjct: 62 RLHTFYAEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQID 121
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +++ATP +L H++ + + D+ +VLDEAD + D GF +I ++L L
Sbjct: 122 ALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKL 178
>gi|395834008|ref|XP_003790009.1| PREDICTED: ATP-dependent RNA helicase DDX54 [Otolemur garnettii]
Length = 859
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 118/234 (50%), Gaps = 28/234 (11%)
Query: 116 QPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAV 175
+P+ +++ ++++K SG FQ +GL + K + K G VP+ IQ IP +
Sbjct: 62 EPDTREMVRAQNKKKKKSGG-------FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVI 114
Query: 176 LNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHM 235
L+GK VV + +GSG+T +LLP+ + L+ A RA++L T E A Q
Sbjct: 115 LDGKDVVAMARTGSGKTACFLLPMFERLKTRSA-----QTGARALILSPTRELALQTMKF 169
Query: 236 AKFISHCARLDSSMENGGVSSKALEDVSNA----PIGMLIATPSEVLQHIEDRNVSCDDI 291
K + L +++ GG +ED A P ++IATP ++ + N+ +
Sbjct: 170 TKELGKFTGLKTALILGG---DKMEDQFAALHENP-DIIIATPGRLVHVAVEMNLKLQSV 225
Query: 292 RYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 345
YVV DEAD LF+ GF ++ +I+ L D G QT+L +A + ++L E
Sbjct: 226 EYVVFDEADRLFEMGFAEQLQEIIARLPD--------GHQTVLFSATLPKLLVE 271
>gi|78776226|ref|YP_392541.1| DEAD/DEAH box helicase [Sulfurimonas denitrificans DSM 1251]
gi|78496766|gb|ABB43306.1| DEAD/DEAH box helicase-like protein [Sulfurimonas denitrificans DSM
1251]
Length = 398
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 95/177 (53%), Gaps = 3/177 (1%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL A ++KA++ G P+ IQ IP +L+ K ++ + +G+G+T + LPL++
Sbjct: 2 SFTTLGLSAPILKAIKDQGYTKPTPIQKQAIPIILSKKDILAGAQTGTGKTAGFTLPLLE 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
+L RD++ + RA++L T E A Q S++ GGVS
Sbjct: 62 LLSRDKSSTKKRI---RALILTPTRELAAQVGESVSIYGKYLSFTSTIIYGGVSINPQLS 118
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ ++IATP +L H+ +++ D+ ++VLDEAD + D GF +I K+L L
Sbjct: 119 ALRKGVDIVIATPGRLLDHLSQKSIDLKDVEFLVLDEADRMLDMGFINDIKKVLAVL 175
>gi|423199692|ref|ZP_17186275.1| hypothetical protein HMPREF1171_04307 [Aeromonas hydrophila SSU]
gi|404628948|gb|EKB25713.1| hypothetical protein HMPREF1171_04307 [Aeromonas hydrophila SSU]
Length = 415
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 98/176 (55%), Gaps = 2/176 (1%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++SF +L L + + + ++G P+ +Q IP +L G+ ++ + +G+G+T A++LPL
Sbjct: 3 IASFADLALSPRLQQTLTELGYAAPTPVQAGAIPLILAGRDLMAGAQTGTGKTAAFVLPL 62
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
++ L + A ++P+ RA+VL T E A Q + L S++ GGVS A
Sbjct: 63 LEQLLQHPASDALRPI--RALVLVPTRELAVQVHESVTRYAKGIDLTSTLVYGGVSIAAQ 120
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
+ A + +LIATP +L H+ +S +R++V DEAD + D GF EI +L
Sbjct: 121 VEALKAGVDLLIATPGRLLDHLRQGALSLAALRHLVFDEADRMLDMGFMDEIKALL 176
>gi|297568967|ref|YP_003690311.1| DEAD/DEAH box helicase domain protein [Desulfurivibrio alkaliphilus
AHT2]
gi|296924882|gb|ADH85692.1| DEAD/DEAH box helicase domain protein [Desulfurivibrio alkaliphilus
AHT2]
Length = 442
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 93/175 (53%), Gaps = 5/175 (2%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F ELGL+AE+++AV + G PS IQ IP VL G ++ + +G+G+T + LPL+Q
Sbjct: 2 TFNELGLRAELLRAVSESGYSQPSPIQSKAIPVVLQGGDLLAGAQTGTGKTAGFALPLLQ 61
Query: 202 MLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE 260
L P + P RA+VL T E A Q + L +++ GGVS +
Sbjct: 62 RLSEK----PAQKSRPIRALVLTPTRELAAQVEASFRLYGKHLPLRTTVVFGGVSIRPQI 117
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
+ +L+ATP +L H+ + + + +VLDEAD + D GF +I KIL
Sbjct: 118 TTLRQGVDILVATPGRLLDHVSQKTIDLSKVEMLVLDEADRMLDMGFLRDIRKIL 172
>gi|221638948|ref|YP_002525210.1| ATP-dependent helicase, DEAD-box [Rhodobacter sphaeroides KD131]
gi|221159729|gb|ACM00709.1| ATP-dependent helicase, DEAD-box [Rhodobacter sphaeroides KD131]
Length = 524
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 98/177 (55%), Gaps = 4/177 (2%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++ F +L L ++KAV++ G P+ IQ IP L GK V+ + +G+G+T ++ LP+
Sbjct: 1 MTKFSDLALDPRVLKAVQEAGYETPTPIQAQAIPHALEGKDVLGIAQTGTGKTASFTLPM 60
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
+ +L + A M PR++VLC T E A Q + ++L ++ GGVS
Sbjct: 61 ITILGKGRARARM----PRSLVLCPTRELAAQVAENFDIYAKHSKLSKALLIGGVSFTEQ 116
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ + + + +LIATP +L H E + ++ +V+DEAD + D GF P+I +I +
Sbjct: 117 DKLIDRGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFS 173
>gi|268553635|ref|XP_002634804.1| Hypothetical protein CBG13909 [Caenorhabditis briggsae]
Length = 845
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 121/233 (51%), Gaps = 25/233 (10%)
Query: 113 SPPQPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGI 172
S + + +QL + + K +G +Q+LGL + KA+EK G P+ IQ I
Sbjct: 3 SDDEEDFKQLQQSQNRKHKKAGG-------WQQLGLDHTIFKAIEKKGFNQPTPIQRKTI 55
Query: 173 PAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLR-RDEALLPMKPMHPRAIVLCTTEESADQ 231
P +++GK VV S +GSG+T A+++P++Q L+ RD + RA+++ T E A Q
Sbjct: 56 PCIMDGKDVVAMSRTGSGKTAAFVIPMLQKLKGRDTKGI-------RALMVSPTRELALQ 108
Query: 232 GFHMAKFISHCARLDSSMENGG-VSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDD 290
F + K + L + GG V + P +L+ATP +L I + ++
Sbjct: 109 TFKVVKELGRFTGLRCACLVGGDVLEDQFSTIHENP-DILLATPGRLLHVIVEMDLRLQF 167
Query: 291 IRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEML 343
++YVV DEAD LF+ GF ++++ L + +S QT+L +A + +ML
Sbjct: 168 VQYVVFDEADRLFEMGFQDQLTETLKRIPESR--------QTLLFSATLPKML 212
>gi|375263173|ref|YP_005025403.1| ATP-dependent RNA helicase [Vibrio sp. EJY3]
gi|369843600|gb|AEX24428.1| ATP-dependent RNA helicase [Vibrio sp. EJY3]
Length = 417
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 106/183 (57%), Gaps = 13/183 (7%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F +LG++ +++ + + + P+ +Q IP VL GK+++ ++ +G+G+T A+ LP++Q
Sbjct: 4 NFADLGIEQNLVETLSTLNIVTPTPVQEKSIPHVLEGKNLLAAAQTGTGKTAAFGLPIIQ 63
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFH-MAKFISHCARLDSSMENG---GVSSK 257
+++++ P+A++L T E A Q F ++++ S A + G GV K
Sbjct: 64 SVQQEKL-----NGTPKALILVPTRELAQQVFESLSQYASQTALRIVCVYGGTSIGVQKK 118
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNP 317
LED ++ +LIATP +L H+ + NV+ +VLDEAD + D GF P++ +IL
Sbjct: 119 KLEDGAD----ILIATPGRLLDHLFNGNVNISKTNTLVLDEADRMLDMGFWPDLQRILRR 174
Query: 318 LKD 320
L D
Sbjct: 175 LPD 177
>gi|341892664|gb|EGT48599.1| hypothetical protein CAEBREN_09605 [Caenorhabditis brenneri]
Length = 813
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/203 (33%), Positives = 111/203 (54%), Gaps = 18/203 (8%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
+Q+LGL + KA+EK G P+ IQ IP +++GK VV S +GSG+T A+++P++Q
Sbjct: 26 WQQLGLDHTIFKAIEKKGFSQPTPIQRKTIPCIMDGKDVVAMSRTGSGKTAAFVIPMLQK 85
Query: 203 LR-RDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGG-VSSKALE 260
L+ RD + RA+++ T E A Q F + K + L + GG V +
Sbjct: 86 LKGRDTKGI-------RALMVSPTRELALQTFKVVKELGRFTGLRCACLVGGDVLEEQFS 138
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 320
+ P +L+ATP +L I + ++ ++YVV DEAD LF+ GF ++++ L + +
Sbjct: 139 TIHENP-DILLATPGRLLHVIVEMDLRLSFVQYVVFDEADRLFEMGFQDQLTETLKRIPE 197
Query: 321 SALKSNGQGFQTILVTAAIAEML 343
S QT+L +A + +ML
Sbjct: 198 SR--------QTLLFSATLPKML 212
>gi|114569874|ref|YP_756554.1| DEAD/DEAH box helicase [Maricaulis maris MCS10]
gi|114340336|gb|ABI65616.1| DEAD/DEAH box helicase domain protein [Maricaulis maris MCS10]
Length = 498
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 116/216 (53%), Gaps = 14/216 (6%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F ELGL ++++A+++ G P+ IQ IPA L G+ V+ + +G+G+T ++ LPL++
Sbjct: 2 TFAELGLSPKLLEAIQEAGYSEPTPIQAGAIPAALAGRDVLGIAQTGTGKTASFTLPLIE 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L R A K PR++++ T E A Q + S +L ++ GGV+ E+
Sbjct: 62 RLSRGRA----KARMPRSLIIAPTRELAAQCAENFETYSKGQKLSMALLIGGVAFGPQEE 117
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDS 321
+ N +LIATP +L H + ++ +V+DEAD + D GF P++ KI + + +
Sbjct: 118 ILNKGADVLIATPGRLLDHFGRGKLLMTGVQMLVVDEADRMLDMGFIPDLEKIFSLVPPA 177
Query: 322 ALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERD 357
+ QT+ +A + +++ SL++ RD
Sbjct: 178 PRR------QTLFFSATMP----KEIQSLVDRFLRD 203
>gi|431892730|gb|ELK03163.1| hypothetical protein PAL_GLEAN10016954 [Pteropus alecto]
Length = 1458
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 122/239 (51%), Gaps = 15/239 (6%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 1016 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 1075
Query: 200 VQMLRRDEALLPM-KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSS------MENG 252
+ E LP K P +++C + E A Q + ++ + DSS + G
Sbjct: 1076 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHSILEYYCRLLQEDSSPLLRCALCIG 1135
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
G+S K + + M++ATP ++ ++ + VS D RY+ LDEAD + D GF +I
Sbjct: 1136 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 1195
Query: 313 KILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAGKVTAMLLEMDQ 371
I + K GQ QT+L +A + + + S + N G+ A L++ Q
Sbjct: 1196 TIFSYFK-------GQ-RQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQ 1246
>gi|407699096|ref|YP_006823883.1| ATP-dependent RNA helicase SrmB [Alteromonas macleodii str. 'Black
Sea 11']
gi|407248243|gb|AFT77428.1| ATP-dependent RNA helicase SrmB [Alteromonas macleodii str. 'Black
Sea 11']
Length = 408
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 96/177 (54%), Gaps = 11/177 (6%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F+EL L + AV MG P+ IQ + IP L+G+ ++ S+ +G+G+T A+LLP Q
Sbjct: 2 TFEELELDEALCHAVADMGFDTPTSIQELVIPHALDGRDILASAPTGTGKTAAFLLPACQ 61
Query: 202 ML----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
L RR +P R ++L T E A Q + A I+ ++ + GG++
Sbjct: 62 FLLDYPRR-------QPGATRILILTPTRELALQVYEQALAITKHTQIVCGVITGGINYG 114
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
++ + + +L+ATP +L+HIE C DI ++LDEAD + D GF +++I
Sbjct: 115 TDKETLSKNLDILVATPGRLLEHIEKEAADCRDIECLILDEADRMLDMGFSTVVNQI 171
>gi|381160579|ref|ZP_09869811.1| DNA/RNA helicase, superfamily II [Thiorhodovibrio sp. 970]
gi|380878643|gb|EIC20735.1| DNA/RNA helicase, superfamily II [Thiorhodovibrio sp. 970]
Length = 438
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 90/177 (50%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF +LGL A++++AV G P+ IQ IPA+L G+ V+ + +G+G+T A+ LPL+Q
Sbjct: 2 SFSDLGLSAKLLRAVTARGYTEPTPIQNQAIPAILAGRDVMAGAQTGTGKTAAFTLPLLQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L + + PRA+VL T E A Q L + GGV
Sbjct: 62 RLSQSGQQASARSPQPRALVLTPTRELAAQVGESVSAYGQYLPLRALQIFGGVGMGPQIT 121
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +L+ATP +L H+ N+ + +VLDEAD + D GF P I ++L L
Sbjct: 122 ALRRGVDILVATPGRLLDHVGQGNLDLGHVELLVLDEADRMLDMGFMPAIRRVLKLL 178
>gi|326929996|ref|XP_003211139.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase
DDX54-like [Meleagris gallopavo]
Length = 831
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 83/289 (28%), Positives = 126/289 (43%), Gaps = 44/289 (15%)
Query: 95 KLRKLNGSAKTNNPENKPSPPQP-------------EQQQLSNIASEREKSSGSNAEVVS 141
K R NG+ + P PP P E Q A ++K SG
Sbjct: 8 KQRGQNGAGEQRRAATLPVPPLPAFPTAEDRDDDTAEDTQAMVRAQNKKKKSGG------ 61
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
FQ +GL + K V K G VP+ IQ IP +L G+ VV + +GSG+T +LLP+ +
Sbjct: 62 -FQSMGLSYPVFKGVMKKGYKVPTPIQRKTIPVILRGRDVVAMARTGSGKTACFLLPMFE 120
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L+ P RA++L T E A Q K + L +++ GG +
Sbjct: 121 RLKAPS------PSGARALILSPTRELALQTLKFTKELGKFTGLKTALVLGGDKMEDQFA 174
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDS 321
+ ++IATP ++ + N+ + YVV DEAD LF+ GF ++ +IL L S
Sbjct: 175 ALHENPDIIIATPGRLVHVAVEMNLKLHSMEYVVFDEADRLFEMGFAEQLQEILARLPGS 234
Query: 322 ALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAGKVTAMLLEMD 370
QT+L +A + ++L +E AG ML+ +D
Sbjct: 235 --------HQTVLFSATLPKLL----------VEFARAGLTEPMLIRLD 265
>gi|407715860|ref|YP_006837140.1| ATP-dependent RNA helicase RhlE [Cycloclasticus sp. P1]
gi|407256196|gb|AFT66637.1| ATP-dependent RNA helicase RhlE [Cycloclasticus sp. P1]
Length = 442
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 105/211 (49%), Gaps = 9/211 (4%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL+AE+I AV K G P+ IQ IP +L G+ ++ + +G+G+T ++ LP++Q
Sbjct: 2 SFDSLGLRAELITAVSKKGYTEPTSIQAQSIPLILEGRDLMGGAQTGTGKTASFTLPVLQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L P K RA+VL T E A Q + L S + GGV+ +
Sbjct: 62 RLMESGDAKP-KAGKVRALVLTPTRELAAQVAESVRDYGQHLPLSSFVIFGGVNINPQKQ 120
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDS 321
+ +L+ATP +L H+ V + +VLDEAD + D GF +I K+L L
Sbjct: 121 KLRKGVDILVATPGRLLDHVSQNTVDLSSVEILVLDEADRMLDMGFIRDIRKVLALLP-- 178
Query: 322 ALKSNGQGFQTILVTAAIAEMLGEQLSSLME 352
Q QT+L +A + + + SSL+
Sbjct: 179 ------QQKQTLLFSATFSNEIKKLTSSLLH 203
>gi|407068786|ref|ZP_11099624.1| ATP-dependent RNA helicase [Vibrio cyclitrophicus ZF14]
Length = 398
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 111/202 (54%), Gaps = 19/202 (9%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F +LGL + ++KAV K G P+ IQ IP VL+GK+++ ++ +G+G+T +++LP+++M
Sbjct: 3 FSKLGLSSPIVKAVAKQGYEKPTSIQEKAIPIVLSGKNLIAAAQTGTGKTASFVLPILEM 62
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQG----FHMAKFISHCARLDSSMENGGVSSKA 258
L + E + RA++L T E A Q AKF++ L S GGVS +
Sbjct: 63 LSKGET---QRKKRIRAVILTPTRELAIQVEQNITKYAKFLN----LTSLAMYGGVSYQH 115
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+D + +L+ATP ++ R V D++ +VLDEAD + D GF +I+KI+ L
Sbjct: 116 QKDRLIEGVDILVATPGRLIDMYGQRAVHFDEVEVLVLDEADRMLDMGFIEDINKIIARL 175
Query: 319 KDSALKSNGQGFQTILVTAAIA 340
Q Q +L +A ++
Sbjct: 176 P--------QNIQNLLFSATLS 189
>gi|320163598|gb|EFW40497.1| ATP-dependent RNA helicase [Capsaspora owczarzaki ATCC 30864]
Length = 1198
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/218 (33%), Positives = 112/218 (51%), Gaps = 20/218 (9%)
Query: 126 ASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSS 185
A R+KSSG FQ LGL + +A+ K G VP+ IQ +P +L GK VV +
Sbjct: 249 AQNRKKSSGG-------FQSLGLSYNIFRAIGKKGYKVPTPIQRKTMPLLLEGKDVVAMA 301
Query: 186 GSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARL 245
+GSG+T A+L+PL++ L ++ +P RA++L T E A Q +S L
Sbjct: 302 RTGSGKTAAFLVPLLEKL---QSHVPGTGC--RALILSPTRELAMQTHKFCNDLSSFTNL 356
Query: 246 DSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDR 305
+ + GG S + + ++IATP L + + N+ ++YVV DEAD LF+
Sbjct: 357 RTRLIVGGESLEQQFAAMHENPDIVIATPGRFLHVVMEMNLRLQAVQYVVFDEADRLFEM 416
Query: 306 GFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEML 343
GF ++S++L L +G QT L +A + ML
Sbjct: 417 GFAEQLSELLARLP--------EGRQTCLFSATLPRML 446
>gi|367055746|ref|XP_003658251.1| hypothetical protein THITE_2124801 [Thielavia terrestris NRRL 8126]
gi|347005517|gb|AEO71915.1| hypothetical protein THITE_2124801 [Thielavia terrestris NRRL 8126]
Length = 594
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/177 (35%), Positives = 102/177 (57%), Gaps = 5/177 (2%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F ELGL + +KA+ +MG +EIQ GIP +L GK V+ ++ +GSG+TLA+L+P V+M
Sbjct: 122 FSELGLSEKTMKAIAEMGFTKMTEIQRRGIPPLLAGKDVLGAAKTGSGKTLAFLIPAVEM 181
Query: 203 LRRDEALLPMKPMHPR-AIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L + L KP + AIV+ T E A Q F +A+ + + GG + +A D
Sbjct: 182 L----SSLRFKPRNGTGAIVVTPTRELALQIFGVARELMKNHSQTYGVVIGGANRRAEAD 237
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +LIATP +L H+++ ++R +++DEAD + + GF E+ +I+ L
Sbjct: 238 KLGKGVNLLIATPGRLLDHLQNTPFVFKNLRSLIIDEADRILEIGFEDEMRQIVKIL 294
>gi|340785392|ref|YP_004750857.1| ATP-dependent RNA helicase RhlE [Collimonas fungivorans Ter331]
gi|340550659|gb|AEK60034.1| ATP-dependent RNA helicase RhlE [Collimonas fungivorans Ter331]
Length = 433
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/180 (36%), Positives = 97/180 (53%), Gaps = 7/180 (3%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
VV SF LGL +++AV + G P+ +Q IPA+L G V+ ++ +GSG+T A+ LP
Sbjct: 13 VVMSFSSLGLSPAILQAVAERGYVTPTPVQIAAIPAILRGGDVLAAAQTGSGKTAAFALP 72
Query: 199 LVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA--RLDSSMENGGVS- 255
L+Q+L+ KP R +VL T E A Q + ++ A L + GGVS
Sbjct: 73 LLQLLQDSPG---EKPRRLRVLVLVPTRELAQQTAEAIRLLAQAAPQSLKIAALFGGVSI 129
Query: 256 SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
+ + D+ +++ATP +L IE VS + +VLDEAD L D GF EI +IL
Sbjct: 130 NPQMMDLRGGA-DIVVATPGRLLDLIEHNAVSIAAVSSLVLDEADRLLDMGFSDEIGRIL 188
>gi|330793454|ref|XP_003284799.1| hypothetical protein DICPUDRAFT_28243 [Dictyostelium purpureum]
gi|325085293|gb|EGC38703.1| hypothetical protein DICPUDRAFT_28243 [Dictyostelium purpureum]
Length = 558
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/268 (26%), Positives = 135/268 (50%), Gaps = 21/268 (7%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+++F+E+ + +I+ ++K G+ PS IQ G+P VL+G+ ++ + +GSG+TL + LP+
Sbjct: 108 ITTFKEMKIPRSIIQVLDKKGIKKPSPIQMQGLPVVLSGRDMIGIAYTGSGKTLVFTLPM 167
Query: 200 VQMLRRDEALLP-MKPMHPRAIVLCTTEESADQGFHMAK-FISHCA-----RLDSSMENG 252
V +E LP ++ P ++L + E A Q + + F A +L + + G
Sbjct: 168 VLFALEEEKKLPIIQGEGPFGLILSPSRELARQTYDLVNSFTDSLAKDGFPKLRTLLAIG 227
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
G+ + E V I M++ATP +L+ ++ + ++ + +Y+ LDEAD L D GF +I
Sbjct: 228 GIDMREQEQVFRKGIHMIVATPGRLLELLQKKKINFNLCKYLGLDEADRLIDFGFEDDIR 287
Query: 313 KILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAGKVTAMLLEMDQA 372
+L+ + QT+L +A + + + E S + N G+ A L + Q
Sbjct: 288 SVLDHFTNQR--------QTLLFSATMPKKIQEFARSALVLPVEVNVGRAGAANLNVTQE 339
Query: 373 EVFDLTESQDALKKKVVEAMDSLHLSAP 400
F E+ K+V ++ L + P
Sbjct: 340 VEFVKPEA------KIVYLLECLQKTPP 361
>gi|116071349|ref|ZP_01468618.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. BL107]
gi|116066754|gb|EAU72511.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. BL107]
Length = 467
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 100/174 (57%), Gaps = 3/174 (1%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F++L L AE ++++ + G P+ IQ + IP VL GK ++ S+ +G+G+T A++LP+++
Sbjct: 34 TFEQLNLCAETVRSIREAGYLSPTPIQTLTIPEVLQGKDIMASAQTGTGKTAAFILPIIE 93
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
+LR ++ K + +++L T E A Q AK + + S GGVS +
Sbjct: 94 LLRVEDK---PKRLQVHSLILTPTRELAAQVEANAKGYTKYLGIRSDAVFGGVSIRPQVK 150
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
+ +L+ATP +L I + + D+++ +VLDEAD + D GF +I K++
Sbjct: 151 RLQGGVDILVATPGRLLDLINQKTIRFDNLKILVLDEADRMLDMGFIRDIKKVI 204
>gi|156543608|ref|XP_001604318.1| PREDICTED: ATP-dependent RNA helicase abstrakt [Nasonia
vitripennis]
Length = 594
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 98/184 (53%), Gaps = 7/184 (3%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ ++ +E+ G+ P+ IQ GIPAVL+G+ ++ + +GSG+TL ++LPL
Sbjct: 178 LRSFKEMKFHKGILLGLEQKGITKPTPIQVQGIPAVLSGRDIIGIAFTGSGKTLVFVLPL 237
Query: 200 VQMLRRDEALLPM-KPMHPRAIVLCTTEESADQGFHMAKFIS------HCARLDSSMENG 252
+ E LP + P +++C + E A Q + + + + HC + + G
Sbjct: 238 IMFCLEQEVALPFGRNEGPYGLIICPSRELAKQTYDIIQHYTNSLRHHHCPEIRCCLAIG 297
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
GV DV + + +++ATP ++ ++ + V RY+ +DEAD + D GF ++
Sbjct: 298 GVPVSESLDVISRGVHIMVATPGRLMDMLDKKMVKLGVCRYLCMDEADRMIDMGFEEDVR 357
Query: 313 KILN 316
I +
Sbjct: 358 TIFS 361
>gi|254481835|ref|ZP_05095078.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
HTCC2148]
gi|214037964|gb|EEB78628.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
HTCC2148]
Length = 435
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 96/177 (54%), Gaps = 3/177 (1%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F +LGL + +++A+EK G PS IQ IPAVL+GK V+ ++ +G+G+T A+ LP++Q
Sbjct: 2 TFDQLGLSSALLRAIEKKGYSEPSPIQAKAIPAVLSGKDVMAAAQTGTGKTAAFTLPILQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L A P+KP RA++L T E A Q L S++ GGV +
Sbjct: 62 RL---NASAPIKPHRIRALILTPTRELAAQVAQSVSTYGLHTPLKSAVVFGGVKINSQIA 118
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +LIATP +L V ++ +VLDEAD + D GF +I +IL L
Sbjct: 119 QLRRGVDILIATPGRLLDLHGQGEVDFGELEILVLDEADRMLDMGFIHDIRRILKLL 175
>gi|15896005|ref|NP_349354.1| DEAD/DEAH box helicase [Clostridium acetobutylicum ATCC 824]
gi|337737958|ref|YP_004637405.1| DEAD-box ATP dependent DNA helicase [Clostridium acetobutylicum DSM
1731]
gi|384459469|ref|YP_005671889.1| ATP dependent RNA helicase DeaD, superfamily II [Clostridium
acetobutylicum EA 2018]
gi|15025785|gb|AAK80694.1|AE007772_6 ATP dependent RNA helicase DeaD, superfamily II [Clostridium
acetobutylicum ATCC 824]
gi|325510158|gb|ADZ21794.1| ATP dependent RNA helicase DeaD, superfamily II [Clostridium
acetobutylicum EA 2018]
gi|336292304|gb|AEI33438.1| DEAD-box ATP dependent DNA helicase [Clostridium acetobutylicum DSM
1731]
Length = 481
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/249 (29%), Positives = 122/249 (48%), Gaps = 34/249 (13%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF++LGL E++K++EK+G PS IQ IP +LNGK ++ + +GSG+T A+ +P+ +
Sbjct: 5 SFRDLGLSEEILKSIEKLGYKKPSSIQEKVIPVILNGKDIIAKAKTGSGKTAAFAIPVCE 64
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
+ +E P+ +VL T E A Q I RL +S E
Sbjct: 65 KIELEER-------EPQVLVLAPTRELAYQIKEDFLNIGRFKRLRC------ISIFGKEP 111
Query: 262 VSN------APIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
+SN + +++ TP VL HIE ++ + ++Y ++DEAD + + GF ++ IL
Sbjct: 112 ISNQIRELKQRVHIVVGTPGRVLDHIERGTLNLEKVKYFIIDEADEMLNMGFIEQVESIL 171
Query: 316 NPLKDSALKSNGQGFQTILVTAAIAE---MLGEQLSSLMECLERDNAGK----VTAMLLE 368
+ + T L +A + E ML ++ E +E N GK + + E
Sbjct: 172 IKMPKNK--------NTFLFSATLPEEIVMLSKKYMKNFENIEVQNEGKTKGGIHQVYYE 223
Query: 369 MDQAEVFDL 377
++ E FDL
Sbjct: 224 VESREKFDL 232
>gi|47223591|emb|CAF99200.1| unnamed protein product [Tetraodon nigroviridis]
Length = 532
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 118/230 (51%), Gaps = 20/230 (8%)
Query: 116 QPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAV 175
+P+ +++ ++++K SG FQ +GL + K V + G VP+ IQ IP +
Sbjct: 19 EPDTREMVRAQNKKKKKSGG-------FQSMGLSFPVFKGVMRKGYKVPTPIQRKTIPVI 71
Query: 176 LNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHM 235
L+GK VV + +GSG+T A+L+P+ + L+ P RA++L T E A Q
Sbjct: 72 LDGKDVVAMARTGSGKTAAFLIPMFERLKA-----PQAQTGARALILSPTRELALQTMKF 126
Query: 236 AKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 295
K + +L +++ GG S + ++I TP ++ I++ N+ ++ YVV
Sbjct: 127 TKELGKFTKLKTALILGGDSMDDQFAALHENPDIIIGTPGRLMHVIKEMNLKLQNVEYVV 186
Query: 296 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 345
DEAD LF+ GF ++ +I+ ++ QT+L +A + +++ E
Sbjct: 187 FDEADRLFEMGFAEQLQEIIRRFPETR--------QTLLFSATLPKVIVE 228
>gi|302388236|ref|YP_003824058.1| DEAD/DEAH box helicase [Clostridium saccharolyticum WM1]
gi|302198864|gb|ADL06435.1| DEAD/DEAH box helicase domain protein [Clostridium saccharolyticum
WM1]
Length = 471
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 103/183 (56%), Gaps = 3/183 (1%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F++L + ++IKA+EK +P+ IQ IP +L+G+ ++ + +G+G+T A+ +P +Q+
Sbjct: 3 FKDLNIIPDIIKALEKESYLIPTPIQEEAIPVILSGRDLLGCAQTGTGKTAAFAIPTIQL 62
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDV 262
LR ++ K + RA+++ T E A Q + L + GGVS K E+
Sbjct: 63 LREEKESHGAK-QNIRALIVTPTRELALQIYESFNTYGKFTDLKCCVVFGGVSQKPQEEK 121
Query: 263 SNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL--NPLKD 320
+ +L+ATP +L I+ + V+ D I+ ++LDEAD + D GF ++ KI+ PLK
Sbjct: 122 LKQRVDILVATPGRLLALIDQKIVNIDHIKILILDEADRMLDMGFIHDVKKIIARTPLKK 181
Query: 321 SAL 323
L
Sbjct: 182 QTL 184
>gi|357607424|gb|EHJ65488.1| vasa-like protein [Danaus plexippus]
Length = 606
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 112/215 (52%), Gaps = 8/215 (3%)
Query: 131 KSSGSNA-EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGS 189
K +G N + SF+ L+ ++ + K G P+ IQ IP ++NG+ ++ + +GS
Sbjct: 179 KVTGENPPRAIESFETANLRNYVLNNILKSGYKKPTPIQKHAIPIIMNGRDLMGCAQTGS 238
Query: 190 GRTLAYLLPLVQMLRRDEALLPMKP---MHPRAIVLCTTEESADQGFHMAKFISHCARLD 246
G+T A+LLP++ L +D L + P P+ +++ T E Q F+ A+ S+ + L
Sbjct: 239 GKTAAFLLPIINTLLQDLRELVVGPNGCAQPQVVIVAPTRELTIQIFNEARKFSYGSILK 298
Query: 247 SSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRG 306
++ GG + + D + +L+ATP + ++ VS D +R+VVLDEAD + D G
Sbjct: 299 IAVAYGGTAVRHQGDNISRGCHILVATPGRLHDFVDRNRVSFDSVRFVVLDEADRMLDMG 358
Query: 307 FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 341
F P + K++ D N QT++ +A E
Sbjct: 359 FMPSVEKMM----DHPTMVNITERQTLMFSATFPE 389
>gi|326928431|ref|XP_003210383.1| PREDICTED: probable ATP-dependent RNA helicase DDX41-like
[Meleagris gallopavo]
Length = 604
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 110/207 (53%), Gaps = 15/207 (7%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 162 IKSFKEMKFPAAILRGLKKKGIQQPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 221
Query: 200 VQMLRRDEALLPM-KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDS------SMENG 252
+ E LP K P +++C + E A Q + ++ + DS ++ G
Sbjct: 222 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGIIEYYCRLLQEDSLPPLRCALCIG 281
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
G+S K + + M++ATP ++ ++ + VS D RY+ LDEAD + D GF +I
Sbjct: 282 GMSVKEQMETIKHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 341
Query: 313 KILNPLKDSALKSNGQGFQTILVTAAI 339
I + K GQ QT+L +A +
Sbjct: 342 TIFSYFK-------GQR-QTLLFSATM 360
>gi|86145735|ref|ZP_01064064.1| ATP-dependent RNA helicase [Vibrio sp. MED222]
gi|218676917|ref|YP_002395736.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
gi|85836434|gb|EAQ54563.1| ATP-dependent RNA helicase [Vibrio sp. MED222]
gi|218325185|emb|CAV27095.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
Length = 399
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 111/202 (54%), Gaps = 19/202 (9%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F +LGL + ++KAV K G P+ IQ IP VL+GK+++ ++ +G+G+T +++LP+++M
Sbjct: 3 FSKLGLSSPIVKAVAKQGYEKPTSIQEKAIPIVLSGKNLIAAAQTGTGKTASFVLPILEM 62
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQG----FHMAKFISHCARLDSSMENGGVSSKA 258
L + E + RA++L T E A Q AKF++ L S GGVS +
Sbjct: 63 LSKGET---QRKKRIRAVILTPTRELAIQVEQNITKYAKFLN----LTSLAMYGGVSYQH 115
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+D + +L+ATP ++ R V D++ +VLDEAD + D GF +I+KI+ L
Sbjct: 116 QKDRLIEGVDILVATPGRLIDMYGQRAVHFDEVEVLVLDEADRMLDMGFIEDINKIIARL 175
Query: 319 KDSALKSNGQGFQTILVTAAIA 340
Q Q +L +A ++
Sbjct: 176 P--------QNIQNLLFSATLS 189
>gi|254508223|ref|ZP_05120347.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus 16]
gi|219548840|gb|EED25841.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus 16]
Length = 403
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 93/169 (55%), Gaps = 3/169 (1%)
Query: 148 LKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDE 207
L ++ A+E+MG P++IQ IP L+G+ ++ S+ +G+G+T A++LP +Q L +
Sbjct: 3 LDPNLLLAIEEMGYDRPTQIQAEAIPQALDGRDILASAPTGTGKTAAFVLPALQYL---Q 59
Query: 208 ALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPI 267
KP R ++L T E A Q A+ ++ +L+ GGV + D+
Sbjct: 60 DFPRRKPGPARILILTPTRELAMQVADQARALAKHTKLNIFTITGGVQYQEHADILGKTQ 119
Query: 268 GMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+++ATP ++++I C I ++VLDEAD + D GFGP + ++ N
Sbjct: 120 DIVVATPGRLMEYINAERFDCRAIEWLVLDEADRMLDMGFGPTVDRLSN 168
>gi|343523874|ref|ZP_08760835.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 175 str. F0384]
gi|343400091|gb|EGV12612.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 175 str. F0384]
Length = 522
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/195 (35%), Positives = 106/195 (54%), Gaps = 11/195 (5%)
Query: 126 ASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSS 185
AS R S + A ++F +LG+ +++ ++ G P IQ +P L G+ V+
Sbjct: 8 ASHRFASGKTPAAGEATFADLGVDSDLAADLDARGFTTPFPIQAATLPDTLAGRDVLGRG 67
Query: 186 GSGSGRTLAYLLPLVQML-RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 244
+GSG+TLA+ LPLVQ L ++D+A +P HP +VL T E A Q +A+ I AR
Sbjct: 68 RTGSGKTLAFSLPLVQRLAQQDKA----RPGHPIGLVLAPTRELALQ---IAEVIEPLAR 120
Query: 245 ---LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 301
+D + GGVS+K E A + +++A P +L + VS D++ VLDEAD
Sbjct: 121 VVDMDVTTIFGGVSAKPQEKALKAGVDVVVACPGRLLDLMGQGLVSLDEVEITVLDEADH 180
Query: 302 LFDRGFGPEISKILN 316
+ D GF P + +IL
Sbjct: 181 MADLGFLPNVRRILR 195
>gi|84385236|ref|ZP_00988268.1| ATP-dependent RNA helicase [Vibrio splendidus 12B01]
gi|84379833|gb|EAP96684.1| ATP-dependent RNA helicase [Vibrio splendidus 12B01]
Length = 399
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 111/202 (54%), Gaps = 19/202 (9%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F +LGL + ++KAV K G P+ IQ IP VL+GK+++ ++ +G+G+T +++LP+++M
Sbjct: 3 FSKLGLSSPIVKAVAKQGYEKPTSIQEKAIPIVLSGKNLIAAAQTGTGKTASFVLPILEM 62
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQG----FHMAKFISHCARLDSSMENGGVSSKA 258
L + E + RA++L T E A Q AKF++ L S GGVS +
Sbjct: 63 LSKGET---QRKKRIRAVILTPTRELAIQVEQNITKYAKFLN----LTSLAMYGGVSYQH 115
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+D + +L+ATP ++ R V D++ +VLDEAD + D GF +I+KI+ L
Sbjct: 116 QKDRLIEGVDILVATPGRLIDMYGQRAVHFDEVEVLVLDEADRMLDMGFIEDINKIIARL 175
Query: 319 KDSALKSNGQGFQTILVTAAIA 340
Q Q +L +A ++
Sbjct: 176 P--------QNIQNLLFSATLS 189
>gi|325982424|ref|YP_004294826.1| DEAD/DEAH box helicase domain-containing protein [Nitrosomonas sp.
AL212]
gi|325531943|gb|ADZ26664.1| DEAD/DEAH box helicase domain protein [Nitrosomonas sp. AL212]
Length = 476
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 100/182 (54%), Gaps = 5/182 (2%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF++LGL ++++A+ + G P+ IQ IP +L G V+ + +G+G+T + LP++Q
Sbjct: 6 SFEQLGLSTDLLRAISEQGYTNPTPIQQQAIPIILKGFDVMGGAQTGTGKTAGFTLPMLQ 65
Query: 202 ML--RRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
L + + P K HP RA++L T E A Q + + L S++ GV+
Sbjct: 66 KLESHANSSTSPAK--HPTRALILVPTRELAIQVYESVRAYGKYVALKSAVIYDGVNIDV 123
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ + +L+ATP +L H++ +N+ I ++LDEAD + D GF P+I +I+ L
Sbjct: 124 QIAAIRSGVEILVATPGRLLDHLQQKNLILSKIEILILDEADRMLDMGFLPDIKQIIQML 183
Query: 319 KD 320
D
Sbjct: 184 PD 185
>gi|198476381|ref|XP_001357350.2| GA17489 [Drosophila pseudoobscura pseudoobscura]
gi|198137669|gb|EAL34419.2| GA17489 [Drosophila pseudoobscura pseudoobscura]
Length = 578
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 116/226 (51%), Gaps = 13/226 (5%)
Query: 131 KSSGSNA-EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGS 189
K SG N + F++ L+ + V K G + + IQ V IP + G+ ++ + +GS
Sbjct: 151 KVSGDNPPAAIKKFEDAKLRDIIAANVTKSGYKLATPIQKVAIPVIAAGRDLMACAQTGS 210
Query: 190 GRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSM 249
G+T A+L+P++ +L D L + P+A+++ T E A Q +H A+ SH + L S+
Sbjct: 211 GKTAAFLVPILNLLLTDAVDLEIGK--PQAVIVSPTRELAIQIYHEARKFSHESYLKISI 268
Query: 250 ENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGP 309
GG S K + +LIATP +L +E ++ DD R++V+DEAD + D GF
Sbjct: 269 LYGGTSVKYQNESIMMGCHLLIATPGRLLDFVERAFITFDDTRFLVMDEADRMLDMGFSE 328
Query: 310 EISKILNPLKDSALKSNGQGFQTILVTAA----IAEMLGEQLSSLM 351
+ KI+ A QT++ +A I M GE L++ +
Sbjct: 329 SMRKIVTHCTMRAQH------QTLMFSATFPQEIQRMAGEFLNNYI 368
>gi|78184025|ref|YP_376460.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9902]
gi|78168319|gb|ABB25416.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9902]
Length = 458
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 101/177 (57%), Gaps = 3/177 (1%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F++L L AE ++++++ G P+ IQ + IP VL GK ++ S+ +G+G+T A++LP+++
Sbjct: 25 TFEQLELCAETVRSIKESGYLSPTPIQALTIPEVLQGKDIMASAQTGTGKTAAFILPIIE 84
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
+LR ++ K ++VL T E A Q AK + L S GGVS +
Sbjct: 85 LLRAEDK---PKRYQVHSLVLTPTRELAAQVEASAKAYTKYLALRSDAVFGGVSIRPQVK 141
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +L+ATP +L I + + D+++ +VLDEAD + D GF +I K++ L
Sbjct: 142 RLQGGVDILVATPGRLLDLINQKMIRFDNLKVLVLDEADRMLDMGFIRDIKKVIEYL 198
>gi|456062808|ref|YP_007501778.1| DEAD/DEAH box helicase domain-containing protein [beta
proteobacterium CB]
gi|455440105|gb|AGG33043.1| DEAD/DEAH box helicase domain-containing protein [beta
proteobacterium CB]
Length = 472
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 96/176 (54%), Gaps = 1/176 (0%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F + GL ++ KAV + G P+ IQ IP VL G ++ ++ +G+G+T A++LP++Q
Sbjct: 25 TFADFGLDPKIQKAVSEQGYNTPTPIQAQSIPHVLAGSDLMGAAQTGTGKTAAFVLPIIQ 84
Query: 202 MLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE 260
+ R + HP RA+VL T E A Q A S L +++ GGV K
Sbjct: 85 KILRHASSSASPARHPIRALVLTPTRELAVQVAENAANYSKHTDLRAAVVYGGVDMKEQV 144
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ + +LIATP +L HI + + + +VLDEAD + D GF P++ +I++
Sbjct: 145 AILRGGVEILIATPGRLLDHIGSKVANLSQVEILVLDEADRMLDMGFLPDLQRIID 200
>gi|170698992|ref|ZP_02890050.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
IOP40-10]
gi|170136099|gb|EDT04369.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
IOP40-10]
Length = 472
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 95/177 (53%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL ++KAV ++G P+ IQ IPAVL G ++ + +G+G+T + LP++Q
Sbjct: 2 SFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L A RA++L T E A Q + S +L S++ GGVS D
Sbjct: 62 RLHTYYAEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQID 121
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +++ATP +L H++ + + ++ +VLDEAD + D GF +I ++L L
Sbjct: 122 ALKRGVDIVVATPGRLLDHMQQKTIDLSNLDILVLDEADRMLDMGFIHDIKRVLAKL 178
>gi|119775538|ref|YP_928278.1| DEAD/DEAH box helicase [Shewanella amazonensis SB2B]
gi|119768038|gb|ABM00609.1| ATP-dependent RNA helicase, DEAD box family [Shewanella amazonensis
SB2B]
Length = 407
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 108/211 (51%), Gaps = 9/211 (4%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF L + + + K+G P+E+Q IP +L G +++ + +G+G+T A+LLP++
Sbjct: 2 SFAAFTLPSPLANNLAKLGFVEPTEVQAGAIPMMLAGDDLMVKAATGTGKTAAFLLPILA 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L DE P PRA+VL T E Q + AK ++ + + + GGV ++ +
Sbjct: 62 RLLADEVASRNLPA-PRALVLVPTRELCQQVYDAAKALAKGSAVRIAQVYGGVPLESQLN 120
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDS 321
+ +++ATP +L H++ R + D + +V DEAD + D GF EI ++ L +
Sbjct: 121 AIKGGVDLMVATPGRLLDHLKKRTLRIDTVSQLVFDEADRMLDMGFEDEIRALVKKLAKT 180
Query: 322 ALKSNGQGFQTILVTAAIAEMLGEQLSSLME 352
QT L +A + + + + SLM+
Sbjct: 181 R--------QTALFSATLGDNVWQLAKSLMD 203
>gi|260914551|ref|ZP_05921019.1| ATP-dependent RNA helicase RhlE [Pasteurella dagmatis ATCC 43325]
gi|260631342|gb|EEX49525.1| ATP-dependent RNA helicase RhlE [Pasteurella dagmatis ATCC 43325]
Length = 442
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 95/178 (53%), Gaps = 11/178 (6%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
++F + L ++KA+ K G P+ IQ IPA + + V+ S+ +G+G+T A+LLP +
Sbjct: 4 ATFDDFDLDPALLKALAKKGYTRPTAIQQETIPAAMEERDVLGSAPTGTGKTAAFLLPAI 63
Query: 201 QML----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSS 256
Q L RR KP PR +VL T E A Q A+ +S L + GGV+
Sbjct: 64 QHLLDYPRR-------KPGAPRVLVLTPTRELAMQVAEQAEELSAFTNLSIATITGGVAY 116
Query: 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+ +V N +++ATP +LQ+I++ N C + ++ DEAD + GFG + KI
Sbjct: 117 QNHGEVFNKNQDIVVATPGRLLQYIKEENFDCRSVEILIFDEADRMLQMGFGQDAEKI 174
>gi|238920914|ref|YP_002934429.1| ATP-dependent RNA helicase SrmB, putative [Edwardsiella ictaluri
93-146]
gi|238870483|gb|ACR70194.1| ATP-dependent RNA helicase SrmB, putative [Edwardsiella ictaluri
93-146]
Length = 448
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 94/175 (53%), Gaps = 5/175 (2%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
++F EL L ++ A+ G P+ IQ IP ++G+ V+ S+ +G+G+T A+LLP +
Sbjct: 4 TNFSELELDERLLDALRDKGYERPTAIQIAAIPPAMDGRDVLGSAPTGTGKTAAFLLPAL 63
Query: 201 QMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
Q L P K P R ++L T E A Q A+ ++ LD + GGVS
Sbjct: 64 QHL----LDFPRKKSGPPRVLILTPTRELAMQVADQARELARHTSLDITTITGGVSYINH 119
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
++ N +++ATP +LQ+I++ N C + ++LDEAD + D GF +I +
Sbjct: 120 AEIFNTNQDLVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDMGFASDIETV 174
>gi|238008396|gb|ACR35233.1| unknown [Zea mays]
gi|413955780|gb|AFW88429.1| putative DEAD-box ATP-dependent RNA helicase family protein [Zea
mays]
Length = 618
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 115/209 (55%), Gaps = 15/209 (7%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
F++L L M++ + + G+ P+ IQ G+P VL+G+ ++ + +GSG+TL ++LPL+
Sbjct: 174 DFRDLRLPEPMLRKLRERGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPLIM 233
Query: 202 MLRRDEALLPMKPMH-PRAIVLCTTEESADQGFH-MAKFI-----SHCARLDSSMENGGV 254
+ ++E+L+P+ P P +++C + E A Q + + +F+ + + + GGV
Sbjct: 234 VALQEESLMPIVPGEGPFGMIICPSRELAKQTYDVIEQFLIPLKEAGYPEIRHLLCIGGV 293
Query: 255 SSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+ DV + +++ATP + + + ++ D+ RY+ LDEAD L D GF +I ++
Sbjct: 294 DMRTQLDVLKKGVHIVVATPGRLKDLLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIKEV 353
Query: 315 LNPLKDSALKSNGQGFQTILVTAAIAEML 343
+ KD QT+L +A + + +
Sbjct: 354 FDHFKDQR--------QTLLFSATMPQKI 374
>gi|209808966|ref|YP_002264504.1| putative ATP-dependent RNA helicase (DEAD/DEAH box helicase)
[Aliivibrio salmonicida LFI1238]
gi|208010528|emb|CAQ80896.1| putative ATP-dependent RNA helicase (DEAD/DEAH box helicase)
[Aliivibrio salmonicida LFI1238]
Length = 495
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 92/177 (51%), Gaps = 3/177 (1%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
F LGL A ++KAVE G PS IQ IPAV+ GK V+ ++ +G+G+T + LPL++
Sbjct: 2 GFTSLGLSAPILKAVEAQGYSTPSPIQLQAIPAVIEGKDVMAAAQTGTGKTAGFTLPLLE 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L + + L K RA++L T E A Q + S L S + GGV +
Sbjct: 62 RLSKGQKL---KFNQVRALILTPTRELAAQVHESVEKYSVNLPLTSDVVFGGVKANPQMQ 118
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +L+ATP +L + D + +VLDEAD + D GF +I KILN L
Sbjct: 119 RLRKGVDVLVATPGRLLDLANQNAIKFDQLEILVLDEADRMLDMGFIHDIKKILNKL 175
>gi|430811708|emb|CCJ30841.1| unnamed protein product [Pneumocystis jirovecii]
Length = 610
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 112/213 (52%), Gaps = 13/213 (6%)
Query: 130 EKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGS 189
EK+ + E V SF +L L ++KA+E +G P+ IQ IP L GK +V S+ +GS
Sbjct: 160 EKNDINMQEHVLSFSQLNLSRPILKALESIGFDKPTTIQSKAIPIALLGKDIVGSAVTGS 219
Query: 190 GRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSM 249
G+T A+++P+++ L P K R ++LC T E A Q +++ K ++ + + +
Sbjct: 220 GKTAAFVIPVLERL----LYRPKKIAVTRVLILCPTRELAIQCYNVTKKLATYTDIKTCI 275
Query: 250 ENGGVSSKALEDVSNAPIGMLIATPSEVLQHIED-RNVSCDDIRYVVLDEADTLFDRGFG 308
GG+S K E ++IATP + H+ + S + I +V+DEAD + D GF
Sbjct: 276 CTGGLSLKIQEAELRKRPDIVIATPGRFIDHVRNSYGFSPNSIEIIVIDEADRILDEGFQ 335
Query: 309 PEISKILNPLKDSALKSNGQGFQTILVTAAIAE 341
E+++I+ S QTIL +A + +
Sbjct: 336 DELNEIIKICPKSR--------QTILFSATMTD 360
>gi|343495002|ref|ZP_08733210.1| ATP-dependent RNA helicase [Vibrio nigripulchritudo ATCC 27043]
gi|342824125|gb|EGU58692.1| ATP-dependent RNA helicase [Vibrio nigripulchritudo ATCC 27043]
Length = 416
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 100/198 (50%), Gaps = 10/198 (5%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F+ LGL ++ + ++G + +Q IP +L+GK V+ + +G+G+T AY LP++Q
Sbjct: 3 FENLGLTPALLSRITQLGFKEATTVQEKSIPHILDGKDVLAGAQTGTGKTAAYGLPIIQR 62
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDV 262
L + P+ R++VL T E A Q +H + GG S K +
Sbjct: 63 LIKSPK--PLTDKLVRSLVLVPTRELAQQVLENLSSYAHELDVKVLAVYGGTSMKVQTEK 120
Query: 263 SNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSA 322
+ +L+ATP +L H+ +N+ ++ +VLDEAD + D GF P+I +IL L D+
Sbjct: 121 LQGGVDILVATPGRLLDHLFTKNIQLNETEVLVLDEADRMLDMGFMPDIQRILRRLNDAR 180
Query: 323 LKSNGQGFQTILVTAAIA 340
QT+ +A A
Sbjct: 181 --------QTLFFSATFA 190
>gi|336314302|ref|ZP_08569221.1| DNA/RNA helicase, superfamily II [Rheinheimera sp. A13L]
gi|335881315|gb|EGM79195.1| DNA/RNA helicase, superfamily II [Rheinheimera sp. A13L]
Length = 420
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 107/212 (50%), Gaps = 10/212 (4%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL ++ AV G P+ IQ IP +L GK V+ + +G+G+T A+ LP++Q
Sbjct: 2 SFATLGLDPRILSAVTNQGYHTPTPIQQQTIPVILEGKDVLAGAQTGTGKTAAFTLPVLQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
+L ++ + + R +VL T E A Q K L ++ GGVS D
Sbjct: 62 LLSKNTT--KVSHLQVRCLVLTPTRELAQQVADSVKAYGADLPLKYAVFYGGVSINPQYD 119
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDS 321
++ + +L+ATP +L H+ VS +++ +VLDEAD + D GF +I +I+ L
Sbjct: 120 QASRGLDILVATPGRLLDHLHQGTVSLSELQILVLDEADRMLDMGFIHDIKRIMARLPKE 179
Query: 322 ALKSNGQGFQTILVTAAIAEMLGEQLSSLMEC 353
QT+ +A A+ + E +L++
Sbjct: 180 R--------QTLFFSATFAKEIKELADTLLKS 203
>gi|302878537|ref|YP_003847101.1| DEAD/DEAH box helicase [Gallionella capsiferriformans ES-2]
gi|302581326|gb|ADL55337.1| DEAD/DEAH box helicase domain protein [Gallionella
capsiferriformans ES-2]
Length = 461
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 99/177 (55%), Gaps = 1/177 (0%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+++F +L L E+++A+ + G P+ IQ IP VL G ++ + +G+G+T A+ LP+
Sbjct: 1 MNNFADLNLAPEILRALIESGYTKPTPIQAQAIPLVLEGSDLMAGAQTGTGKTAAFALPV 60
Query: 200 VQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
+Q L + P H RA++L T E A Q K + + L S + GGV K
Sbjct: 61 LQKLMPFASSSPSPARHAVRALILVPTRELAIQVEASVKAYAKYSHLRSLVVFGGVDIKT 120
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
A I +L+ATP +L HIE ++V + ++ +VLDEAD + D GF P++ +IL
Sbjct: 121 QTPHLRAGIEILVATPGRLLDHIEQKSVQLNQVQMLVLDEADRMLDMGFMPDLKRIL 177
>gi|299067900|emb|CBJ39113.1| ATP-dependent RNA helicase hydrolase [Ralstonia solanacearum CMR15]
Length = 548
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 94/184 (51%), Gaps = 10/184 (5%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF ELGL ++++AV ++G P+ IQ IPA+L G ++ + +G+G+T + LPL
Sbjct: 2 SFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPL-- 59
Query: 202 MLRRDEALLPMKPMHP-------RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGV 254
L R A+ P K P RA+VL T E A Q + L S + GGV
Sbjct: 60 -LHRLSAVQPNKVQTPNGMRYPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGV 118
Query: 255 SSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
D + +++ATP +L H+ R + I +VLDEAD + D GF +I KI
Sbjct: 119 GINPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKI 178
Query: 315 LNPL 318
LN L
Sbjct: 179 LNIL 182
>gi|317049189|ref|YP_004116837.1| DEAD/DEAH box helicase [Pantoea sp. At-9b]
gi|316950806|gb|ADU70281.1| DEAD/DEAH box helicase domain protein [Pantoea sp. At-9b]
Length = 442
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 96/176 (54%), Gaps = 5/176 (2%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
V++F EL L ++ A+++ G P+ IQ IPA L G+ V+ S+ +G+G+T AYLLP
Sbjct: 3 VTTFSELELDESLLDALQEKGFTRPTAIQAEAIPAALEGRDVLGSAPTGTGKTAAYLLPA 62
Query: 200 VQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
+Q L P K P R ++L T E A Q A+ ++ LD + GGV+
Sbjct: 63 MQHL----IDFPRKKSGPPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMN 118
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+V + +++AT +LQ+I++ N C + ++LDEAD + D GF +I I
Sbjct: 119 HAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETI 174
>gi|315633344|ref|ZP_07888635.1| ATP-dependent RNA helicase SrmB [Aggregatibacter segnis ATCC 33393]
gi|315477844|gb|EFU68585.1| ATP-dependent RNA helicase SrmB [Aggregatibacter segnis ATCC 33393]
Length = 442
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 97/179 (54%), Gaps = 11/179 (6%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++ F + L E++ A++K G P+ IQ IPA + G V+ S+ +G+G+T A+LLP
Sbjct: 4 LTQFADFDLAPELLNALQKKGYQRPTAIQQETIPAAMEGFDVLGSAPTGTGKTAAFLLPA 63
Query: 200 VQML----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS 255
+Q L RR KP PR ++L T E A Q A+ ++ +L + GGV+
Sbjct: 64 IQHLLDYPRR-------KPGAPRVLILTPTRELAMQVAEQAEELACFTKLSIATITGGVA 116
Query: 256 SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+ ++ N +++ATP +LQ+I++ N C + ++ DEAD + GFG + KI
Sbjct: 117 YQNHGEIFNKNQDIVVATPGRLLQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKI 175
>gi|172061636|ref|YP_001809288.1| DEAD/DEAH box helicase [Burkholderia ambifaria MC40-6]
gi|171994153|gb|ACB65072.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
MC40-6]
Length = 479
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 95/177 (53%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL ++KAV ++G P+ IQ IPAVL G ++ + +G+G+T + LP++Q
Sbjct: 2 SFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L A RA++L T E A Q + S +L S++ GGVS D
Sbjct: 62 RLHTYYAEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQID 121
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +++ATP +L H++ + + ++ +VLDEAD + D GF +I ++L L
Sbjct: 122 ALKRGVDIVVATPGRLLDHMQQKTIDLSNLDILVLDEADRMLDMGFIHDIKRVLAKL 178
>gi|390348110|ref|XP_001199247.2| PREDICTED: probable ATP-dependent RNA helicase DDX28-like
[Strongylocentrotus purpuratus]
Length = 568
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 97/178 (54%), Gaps = 3/178 (1%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
++FQ+L L +IK ++ M + P+ IQ IP +L GK+ + ++ +GSG+TL YLLPL+
Sbjct: 147 NTFQDLKLHPSIIKGLDVMDIVTPTSIQLSAIPVILRGKNTLCAAETGSGKTLTYLLPLM 206
Query: 201 QMLRRDEAL---LPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
Q L + +P PR +VL E Q + +AK ++ A L +G S K
Sbjct: 207 QRLVEESKQTDNFTAEPGLPRGVVLVPVGELVHQVWEVAKVLADSAGLSVQYIDGETSLK 266
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
+LE + ++I+TP ++ + S D + ++V+DE+DT+ D F + KIL
Sbjct: 267 SLEKRLSLSTDIIISTPGPIINAVRQGYGSLDCVSHIVIDESDTMLDDSFIQQTLKIL 324
>gi|255553305|ref|XP_002517695.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223543327|gb|EEF44859.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 585
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 108/187 (57%), Gaps = 7/187 (3%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
V +FQ++ ++K ++ G+ P+ IQ G+P +L+G+ ++ + +GSG+TLA++LP+
Sbjct: 138 VKNFQDMRFPEPILKTLKAKGIVQPTPIQIQGLPVILSGRDMIGIAFTGSGKTLAFVLPM 197
Query: 200 VQMLRRDEALLPMKPMH-PRAIVLCTTEESADQGFHMA-KFISHCAR-----LDSSMENG 252
+ + ++E ++P+ P P +++C + E A Q + + +F+ R L + + G
Sbjct: 198 ITIAFQEEIMMPIAPREGPFGLIICPSRELARQTYEVVEQFLIPTRRAGYPELRALLCVG 257
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
GV ++ +V + +++ATP + + + ++ D+ RY+ LDEAD L D GF +I
Sbjct: 258 GVDMRSQLEVVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIR 317
Query: 313 KILNPLK 319
+I + K
Sbjct: 318 EIFSYFK 324
>gi|226502378|ref|NP_001147853.1| ATP-dependent RNA helicase DDX41 [Zea mays]
gi|195614138|gb|ACG28899.1| ATP-dependent RNA helicase DDX41 [Zea mays]
Length = 616
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 115/209 (55%), Gaps = 15/209 (7%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
F++L L M++ + + G+ P+ IQ G+P VL+G+ ++ + +GSG+TL ++LPL+
Sbjct: 172 DFRDLRLPEPMLRKLRERGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPLIM 231
Query: 202 MLRRDEALLPMKPMH-PRAIVLCTTEESADQGFH-MAKFI-----SHCARLDSSMENGGV 254
+ ++E+L+P+ P P +++C + E A Q + + +F+ + + + GGV
Sbjct: 232 VALQEESLMPIVPGEGPFGMIICPSRELAKQTYDVIEQFLIPLKEAGYPEIRHLLCIGGV 291
Query: 255 SSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+ DV + +++ATP + + + ++ D+ RY+ LDEAD L D GF +I ++
Sbjct: 292 DMRTQLDVLKKGVHIVVATPGRLKDLLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIKEV 351
Query: 315 LNPLKDSALKSNGQGFQTILVTAAIAEML 343
+ KD QT+L +A + + +
Sbjct: 352 FDHFKDQR--------QTLLFSATMPQKI 372
>gi|383784621|ref|YP_005469191.1| DEAD/DEAH box helicase [Leptospirillum ferrooxidans C2-3]
gi|383083534|dbj|BAM07061.1| putative DEAD/DEAH box helicase domain protein [Leptospirillum
ferrooxidans C2-3]
Length = 437
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 102/186 (54%), Gaps = 17/186 (9%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL E+++AV + G P+ IQ IPAVL+G+ ++ + +G+G+T + LP+++
Sbjct: 2 SFSALGLSEEIVRAVTERGYLTPTPIQVAAIPAVLSGRDLMAGAQTGTGKTAGFTLPIIE 61
Query: 202 ML-RRDEALLPMKPMHPRAIVLCTTEESADQ--------GFHMAKFISHCARLDSSMENG 252
+L R+++ + + +A++L T E A Q G HM +L S++ G
Sbjct: 62 ILSRKNDKKEKGRRVPVKALILTPTRELAAQVEESVVEYGKHM--------KLSSTVIFG 113
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
GVS + +L+ATP +L H++ R + + +VLDEAD + D GF +I
Sbjct: 114 GVSINPQIQKLRTGVDILVATPGRLLDHVQQRTLDLSHVEILVLDEADRMLDMGFIRDIR 173
Query: 313 KILNPL 318
KI++ L
Sbjct: 174 KIISLL 179
>gi|427721123|ref|YP_007069117.1| DEAD/DEAH box helicase [Calothrix sp. PCC 7507]
gi|427353559|gb|AFY36283.1| DEAD/DEAH box helicase domain protein [Calothrix sp. PCC 7507]
Length = 438
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 95/178 (53%), Gaps = 1/178 (0%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL E+I+AV ++G P+ IQ IP +L+G ++ + +G+G+T ++ LPL+
Sbjct: 2 SFSNLGLSNEIIRAVTELGYTKPTPIQKQAIPVILSGGDLLAGAQTGTGKTASFTLPLLH 61
Query: 202 MLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE 260
L D P P RA++L T E A Q + L++ GGVS +
Sbjct: 62 RLSNDSVKSTSNPYPPIRALILTPTRELAAQVESSVREYGKYLNLNTMAMFGGVSINPQK 121
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ + +L+ATP +L H++ V+ + +VLDEAD + D GF +I +IL+ L
Sbjct: 122 RLLKGRVDILVATPGRLLDHVQQGTVNLSHVEVLVLDEADRMLDMGFIRDIRRILSLL 179
>gi|262273976|ref|ZP_06051788.1| ATP-dependent RNA helicase [Grimontia hollisae CIP 101886]
gi|262221786|gb|EEY73099.1| ATP-dependent RNA helicase [Grimontia hollisae CIP 101886]
Length = 441
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 107/199 (53%), Gaps = 14/199 (7%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F++LGL ++K +E G P+++Q IP V GK ++ SS +GSG+TLA+LLP +Q
Sbjct: 3 FEDLGLDKRLLKTMELWGFDTPTDVQASAIPVVCAGKDLLASSKTGSGKTLAFLLPALQR 62
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGG--VSSKALE 260
+ R +A PR +VL T E Q + + + + + GG + +A E
Sbjct: 63 VMRSKAF---SRSGPRVVVLAPTRELVKQVYGELRKLLAGTQFKGMLILGGENFNDQAKE 119
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 320
N ++ATP + H+E R++S + + ++LDEAD + D GF P++ I +
Sbjct: 120 FRKNP--AFIVATPGRLADHLEHRHLSLEGLELLILDEADRMLDLGFAPQLKAI-----N 172
Query: 321 SALKSNGQGFQTILVTAAI 339
SA +N + QT++ +A +
Sbjct: 173 SA--ANHRRRQTLMFSATL 189
>gi|195115577|ref|XP_002002333.1| GI13281 [Drosophila mojavensis]
gi|193912908|gb|EDW11775.1| GI13281 [Drosophila mojavensis]
Length = 649
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 113/216 (52%), Gaps = 12/216 (5%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF + L+ +++ V K G VP+ IQ V IP + G+ ++ + +GSG+T A+LLP+
Sbjct: 234 IKSFDQARLRGSVLENVVKSGYVVPTPIQKVSIPVIAEGRDLMACAQTGSGKTAAFLLPI 293
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
+ + + L + P+A+++ T E A Q F+ A+ ++ L S+ GG S K
Sbjct: 294 LSNILDESHDLEIG--KPQAVIVSPTRELAIQIFNEARKFAYSTYLKISIVYGGTSFKYQ 351
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319
+ +LIATP +L ++ ++ +D R+VVLDEAD + D GF + KI++
Sbjct: 352 NECITKGCHVLIATPGRLLDFVDRTFITFNDTRFVVLDEADRMLDMGFSDSMRKIMHHQT 411
Query: 320 DSALKSNGQGFQTILVTAAIAE----MLGEQLSSLM 351
A QT++ +A E M GE L + +
Sbjct: 412 MRAEH------QTLMFSATFPEEIQRMAGEFLRNYV 441
>gi|163758551|ref|ZP_02165638.1| DEAD/DEAH box helicase-like protein [Hoeflea phototrophica DFL-43]
gi|162283841|gb|EDQ34125.1| DEAD/DEAH box helicase-like protein [Hoeflea phototrophica DFL-43]
Length = 508
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 95/176 (53%), Gaps = 9/176 (5%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F +LGL ++ ++++ L P+ IQ IP VL G+ V+ + +G+G+T A+ LP++
Sbjct: 12 FSQLGLSKALLDTLDQLHLTTPTPIQTQAIPPVLEGRDVIGLAQTGTGKTAAFTLPILHR 71
Query: 203 LRRDEALLPMKPMHP---RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
L P KP P R ++L T E + Q K + L S++ GGVS +
Sbjct: 72 L------APGKPAGPKKARVLILSPTRELSAQIAKTVKDLGRKLSLRSAVVVGGVSIRPQ 125
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
+ + +LIATP ++ IE R VS ++I VVLDEAD + D GF P I +IL
Sbjct: 126 IKTLASGVDVLIATPGRLMDLIEQRAVSLNEIEVVVLDEADQMLDIGFMPAIKRIL 181
>gi|115352774|ref|YP_774613.1| DEAD/DEAH box helicase [Burkholderia ambifaria AMMD]
gi|115282762|gb|ABI88279.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria AMMD]
Length = 480
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 95/177 (53%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL ++KAV ++G P+ IQ IPAVL G ++ + +G+G+T + LP++Q
Sbjct: 2 SFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L A RA++L T E A Q + S +L S++ GGVS D
Sbjct: 62 RLHTYYAEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQID 121
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +++ATP +L H++ + + ++ +VLDEAD + D GF +I ++L L
Sbjct: 122 ALKRGVDIVVATPGRLLDHMQQKTIDLSNLDILVLDEADRMLDMGFIHDIKRVLAKL 178
>gi|322515347|ref|ZP_08068343.1| ATP-dependent RNA helicase DeaD [Actinobacillus ureae ATCC 25976]
gi|322118634|gb|EFX90856.1| ATP-dependent RNA helicase DeaD [Actinobacillus ureae ATCC 25976]
Length = 445
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 98/177 (55%), Gaps = 11/177 (6%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F+EL L +++KA+ K G P+ +Q IP L+G+ ++ S+ +G+G+T A+LLP +Q
Sbjct: 9 TFEELDLAPQLLKALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTAAFLLPAIQ 68
Query: 202 ML----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
L RR K PR ++L T E A Q A+ + +L + GGV+ +
Sbjct: 69 NLLDYPRR-------KLGAPRILILTPTRELAMQVAEEAQAFAEFTKLSIATITGGVAYQ 121
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+V N+ +++ATP ++Q+I++ N C + ++ DEAD + GFG + KI
Sbjct: 122 NHGEVFNSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKI 178
>gi|134296873|ref|YP_001120608.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
vietnamiensis G4]
gi|387903185|ref|YP_006333524.1| ATP-dependent RNA helicase RhlE [Burkholderia sp. KJ006]
gi|134140030|gb|ABO55773.1| DEAD/DEAH box helicase domain protein [Burkholderia vietnamiensis
G4]
gi|387578077|gb|AFJ86793.1| ATP-dependent RNA helicase RhlE [Burkholderia sp. KJ006]
Length = 486
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 94/177 (53%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL ++KAV ++G P+ IQ IPAVL G ++ + +G+G+T + LP++Q
Sbjct: 2 SFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L RA++L T E A Q + S +L S++ GGVS D
Sbjct: 62 RLHTFYTEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQID 121
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +++ATP +L H++ + + D+ +VLDEAD + D GF +I ++L L
Sbjct: 122 ALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKL 178
>gi|17545258|ref|NP_518660.1| ATP-dependent RNA helicase [Ralstonia solanacearum GMI1000]
gi|17427549|emb|CAD14067.1| probable atp-dependent rna helicase protein [Ralstonia solanacearum
GMI1000]
Length = 540
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 93/182 (51%), Gaps = 10/182 (5%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF ELGL ++++AV ++G P+ IQ IPA+L G ++ + +G+G+T + LPL
Sbjct: 2 SFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPL-- 59
Query: 202 MLRRDEALLPMKPMHP-------RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGV 254
L R A+ P K P RA+VL T E A Q + L S + GGV
Sbjct: 60 -LHRLSAVQPNKVQTPHGMRYPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGV 118
Query: 255 SSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
D + +++ATP +L H+ R + I +VLDEAD + D GF +I KI
Sbjct: 119 GINPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKI 178
Query: 315 LN 316
LN
Sbjct: 179 LN 180
>gi|326673881|ref|XP_003200020.1| PREDICTED: probable ATP-dependent RNA helicase DDX41-like, partial
[Danio rerio]
Length = 477
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 110/209 (52%), Gaps = 19/209 (9%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ ++K ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 35 IKSFREMKFPQAILKGLKKKGIVHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPI 94
Query: 200 VQMLRRDEALLPM-KPMHPRAIVLCTTEESADQGFHMAKFISHCARLD--------SSME 250
+ E LP K P +++C + E A Q + ++ +C L+ ++
Sbjct: 95 IMFCLEQEKRLPFCKREGPYGLIICPSRELARQTHGIIEY--YCKLLEDEGAPQMRCALC 152
Query: 251 NGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPE 310
GG+S K +V + M++ATP ++ + + VS D RY+ LDEAD + D GF +
Sbjct: 153 IGGMSVKEQMEVVKHGVHMMVATPGRLMDLLNKKMVSLDICRYLALDEADRMIDMGFEED 212
Query: 311 ISKILNPLKDSALKSNGQGFQTILVTAAI 339
I I + K GQ QT+L +A +
Sbjct: 213 IRTIFSYFK-------GQR-QTLLFSATM 233
>gi|426403343|ref|YP_007022314.1| RNA helicase [Bdellovibrio bacteriovorus str. Tiberius]
gi|425860011|gb|AFY01047.1| RNA helicase [Bdellovibrio bacteriovorus str. Tiberius]
Length = 408
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 130/232 (56%), Gaps = 13/232 (5%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+++F + L ++K ++ + + P++IQ IP +++ ++VV S +GSG+TLAY+LP+
Sbjct: 1 MNTFADFELLPSLLKTLKTLKISKPTDIQKQAIPLIMSHQAVVGVSETGSGKTLAYVLPI 60
Query: 200 VQMLRR-DEALLPMKPMH-PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
+ L+ ++A P+K + PRA+V+ + E +Q + K ++H RL GG+S +
Sbjct: 61 LNYLKSLEDAGDPVKEENAPRAVVMVPSRELGEQVAKVFKSMTHDTRLRVRPALGGMSLE 120
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNP 317
++ +L+ATP ++Q + +S D+R++V DEAD + D+GF P+ ++I++
Sbjct: 121 QARRNTSGAFEVLLATPGRLVQMLNKDLISLRDVRFLVFDEADQMLDQGFLPDTNRIVDC 180
Query: 318 LKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLM---ECLERDNAGKVTAML 366
+ L +A +++ + + ++ L E + N+GKV + L
Sbjct: 181 CPEDV--------NLALFSATVSKTVEKLMNDLFAKAEVIRSKNSGKVVSTL 224
>gi|407782169|ref|ZP_11129383.1| DEAD/DEAH box helicase [Oceanibaculum indicum P24]
gi|407206339|gb|EKE76296.1| DEAD/DEAH box helicase [Oceanibaculum indicum P24]
Length = 499
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 97/177 (54%), Gaps = 4/177 (2%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
F +LGL ++++A+E G P+ IQ IP VL G+ V+ + +G+G+T + LP+++
Sbjct: 2 GFSDLGLSPDLLRAIEDAGYTTPTPIQEQAIPQVLMGRDVLGVAQTGTGKTAGFTLPMIE 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
+L + A K PR+++L T E A Q + +L+ ++ GGVS E
Sbjct: 62 ILGKGRA----KARMPRSLILEPTRELAAQVAENFEKYGKYQKLNMALLIGGVSFADQEK 117
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ + +LIATP +L H + D++ +V+DEAD + D GF P+I +I+ L
Sbjct: 118 KIDRGVDVLIATPGRLLDHFGRGKILLQDVKILVIDEADRMLDMGFIPDIERIVGVL 174
>gi|293397166|ref|ZP_06641440.1| ATP-dependent RNA helicase RhlE [Serratia odorifera DSM 4582]
gi|291420637|gb|EFE93892.1| ATP-dependent RNA helicase RhlE [Serratia odorifera DSM 4582]
Length = 447
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/179 (36%), Positives = 102/179 (56%), Gaps = 5/179 (2%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL AE+++AVE+ G P+ IQ IP VL G+ ++ S+ +G+G+T + LP++Q
Sbjct: 2 SFETLGLSAEILRAVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPVLQ 61
Query: 202 ML-RRDEALLPMKPMHPRAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSSKAL 259
+L + D A+ +P+ RA++L T E A Q G ++ + H RL S + GGVS
Sbjct: 62 LLSKHDHAVKGRRPV--RALILTPTRELAAQIGENVQAYSKHL-RLRSLVVFGGVSINPQ 118
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +L+ATP +L V I +VLDEAD + D GF +I ++L+ L
Sbjct: 119 MMKLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLSKL 177
>gi|171317466|ref|ZP_02906657.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
MEX-5]
gi|171097362|gb|EDT42206.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
MEX-5]
Length = 480
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 95/177 (53%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL ++KAV ++G P+ IQ IPAVL G ++ + +G+G+T + LP++Q
Sbjct: 2 SFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L A RA++L T E A Q + S +L S++ GGVS D
Sbjct: 62 RLHTYYAEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQID 121
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +++ATP +L H++ + + ++ +VLDEAD + D GF +I ++L L
Sbjct: 122 ALKRGVDIVVATPGRLLDHMQQKTIDLSNLDILVLDEADRMLDMGFIHDIKRVLAKL 178
>gi|443316249|ref|ZP_21045701.1| DNA/RNA helicase, superfamily II [Leptolyngbya sp. PCC 6406]
gi|442784157|gb|ELR94045.1| DNA/RNA helicase, superfamily II [Leptolyngbya sp. PCC 6406]
Length = 438
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 93/180 (51%), Gaps = 8/180 (4%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL A +++AVE G P+ IQ IP VL GK ++ S+ +G+G+T + LP++
Sbjct: 2 SFETLGLAAGILRAVEDQGYSTPTPIQAKAIPLVLEGKDLMASAQTGTGKTAGFTLPILH 61
Query: 202 MLR---RDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
L R + P PRA+VL T E A Q L +++ GGV +
Sbjct: 62 KLASAGRGQGRRP-----PRALVLTPTRELAAQVAESIATYGKYVPLRTAVVFGGVKIQP 116
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +L+ATP +L H+ R V + +VLDEAD + D GF +I ++LN L
Sbjct: 117 QIHKLQRGVDVLVATPGRLLDHVGQRTVDLSQVEVLVLDEADRMLDMGFIHDIRRLLNEL 176
>gi|297539139|ref|YP_003674908.1| DEAD/DEAH box helicase domain-containing protein [Methylotenera
versatilis 301]
gi|297258486|gb|ADI30331.1| DEAD/DEAH box helicase domain protein [Methylotenera versatilis
301]
Length = 532
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 93/184 (50%), Gaps = 13/184 (7%)
Query: 138 EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLL 197
E + +F ELGL +++A+ G P+ IQ IP VL+G ++ + +G+G+T + L
Sbjct: 4 ETILNFNELGLSEPILRAINDAGYTTPTPIQSKAIPQVLSGGDLLAGAQTGTGKTAGFTL 63
Query: 198 PLVQMLRRDEALLPMKPM------HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMEN 251
P++ LL KP+ PR ++L T E A Q K L S++
Sbjct: 64 PILH-------LLSQKPLSEVVKGRPRCLMLTPTRELAAQIEESVKVYGKFLPLTSTVIF 116
Query: 252 GGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEI 311
GGV++ P+ +L+ATP +L H +NV I +VLDEAD + D GF +I
Sbjct: 117 GGVNANPQIARLKKPLDILVATPGRLLDHANQKNVDLSGIEILVLDEADRMLDMGFIRDI 176
Query: 312 SKIL 315
KIL
Sbjct: 177 KKIL 180
>gi|85059773|ref|YP_455475.1| ATP-dependent RNA helicase SrmB [Sodalis glossinidius str.
'morsitans']
gi|84780293|dbj|BAE75070.1| ATP-dependent RNA helicase [Sodalis glossinidius str. 'morsitans']
Length = 447
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 97/176 (55%), Gaps = 5/176 (2%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
V+ F EL L +++ A+ G P+ IQ IPA ++G+ V+ S+ +G+G+T AYLLP+
Sbjct: 3 VTQFSELELHEDLLAAISDKGFERPTAIQAEAIPAAMDGRDVLGSAPTGTGKTAAYLLPV 62
Query: 200 VQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
+Q L P K P R +++ T E A Q AK ++ LD + GGV+
Sbjct: 63 LQHLLD----FPRKKSGPPRVLIVTPTRELAMQVAEQAKQLAAHTHLDIATITGGVAYMN 118
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+V + +++AT +LQ+I++ N C + ++LDEAD + D GF ++ +I
Sbjct: 119 HAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFALDVEQI 174
>gi|330445855|ref|ZP_08309507.1| DEAD/DEAH box helicase family protein [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
gi|328490046|dbj|GAA04004.1| DEAD/DEAH box helicase family protein [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
Length = 455
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 98/176 (55%), Gaps = 3/176 (1%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F +LGL ++KAV +MG P+ IQ IP L GK+++ ++ +G+G+T +++LP++QM
Sbjct: 3 FSKLGLSDSIVKAVTEMGYTSPTPIQEKAIPVALTGKNLMAAAQTGTGKTASFVLPILQM 62
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDV 262
L D+ + ++P RA++L T E A Q K S L S GGV + +
Sbjct: 63 L--DDG-IKVRPKRVRALILAPTRELAVQVEDNIKQYSKHLNLKSMAMYGGVDYEPQKRR 119
Query: 263 SNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +L+ATP +L R + D I +VLDEAD + D GF +I+KI+ L
Sbjct: 120 LIEGVDILVATPGRLLDMYTQRAIHFDAIEILVLDEADRMLDMGFIEDINKIVERL 175
>gi|194440585|dbj|BAG65665.1| vasa [Gryllus bimaculatus]
Length = 650
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 102/189 (53%), Gaps = 3/189 (1%)
Query: 131 KSSGSNA-EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGS 189
K SG N + F+ GL+ ++ ++K G P+ IQ IP +++G+ ++ + +GS
Sbjct: 203 KVSGENVPRAIDRFENSGLRQFVLDNIKKSGYAKPTPIQKHAIPIIMSGRDLMACAQTGS 262
Query: 190 GRTLAYLLPLVQMLRRDEALLPMKPMH--PRAIVLCTTEESADQGFHMAKFISHCARLDS 247
G+T A+LLP++ +L D L + H P AI++ T E Q + A+ +H + + +
Sbjct: 263 GKTAAFLLPIINVLLSDPRDLILTAEHCEPHAIIVSPTRELTLQIYSEARKFAHGSIIKA 322
Query: 248 SMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGF 307
+ GG ++ +L+ATP +L + +S +R+VVLDEAD + D GF
Sbjct: 323 VVTYGGTAAYHQAQQVMKGCHILVATPGRLLDFVNRGRISFASVRFVVLDEADRMLDMGF 382
Query: 308 GPEISKILN 316
P+I K++N
Sbjct: 383 MPDIEKMMN 391
>gi|187927522|ref|YP_001898009.1| DEAD/DEAH box helicase [Ralstonia pickettii 12J]
gi|404394476|ref|ZP_10986280.1| hypothetical protein HMPREF0989_04985 [Ralstonia sp. 5_2_56FAA]
gi|187724412|gb|ACD25577.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12J]
gi|404279086|gb|EJZ44455.1| hypothetical protein HMPREF0989_04985 [Ralstonia sp. 5_2_56FAA]
Length = 560
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 93/184 (50%), Gaps = 10/184 (5%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF ELGL ++++AV ++G P+ IQ IPA+L G ++ + +G+G+T + LPL
Sbjct: 2 SFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILRGGDLLAGAQTGTGKTAGFTLPL-- 59
Query: 202 MLRRDEALLPMKPMHP-------RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGV 254
L R A P K P RA+VL T E A Q + L S + GGV
Sbjct: 60 -LHRLSAAQPNKVQTPQGMRFPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGV 118
Query: 255 SSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
D + +++ATP +L H+ R + I +VLDEAD + D GF +I KI
Sbjct: 119 GINPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKI 178
Query: 315 LNPL 318
LN L
Sbjct: 179 LNIL 182
>gi|126736040|ref|ZP_01751784.1| ATP-dependent RNA helicase, putative [Roseobacter sp. CCS2]
gi|126714597|gb|EBA11464.1| ATP-dependent RNA helicase, putative [Roseobacter sp. CCS2]
Length = 484
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 96/176 (54%), Gaps = 4/176 (2%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++ F +L L +++KAV + G P+ IQ I L G+ V+ + +G+G+T A+ LP+
Sbjct: 1 MTKFSDLNLAPKVLKAVTETGYDTPTPIQAGAIAPALEGRDVLGIAQTGTGKTAAFTLPM 60
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
+ +L R A M PR++VL T E A Q + +L ++ GG S K
Sbjct: 61 ITLLGRGRARARM----PRSLVLAPTRELAAQVAENFDAYAKYTKLSRALLIGGTSFKDQ 116
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
+ + + + +LIATP +L H+E + D++ +V+DEAD + D GF P+I +I
Sbjct: 117 DKIIDKGVDVLIATPGRLLDHLERGKLILTDVKIMVVDEADRMLDMGFIPDIEEIF 172
>gi|453062686|gb|EMF03676.1| ATP-dependent RNA helicase RhlE [Serratia marcescens VGH107]
Length = 457
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/179 (36%), Positives = 100/179 (55%), Gaps = 5/179 (2%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL AE+++AVE+ G P+ IQ IP VL G+ ++ S+ +G+G+T + LPL+Q
Sbjct: 2 SFETLGLSAEIVRAVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 202 MLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSSKAL 259
+L + + P+K P RA++L T E A Q G ++ + H RL S + GGVS
Sbjct: 62 LLSKHDH--PVKGRRPVRALILTPTRELAAQIGENVDAYSKHL-RLRSLVVFGGVSINPQ 118
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +L+ATP +L V I +VLDEAD + D GF +I ++L L
Sbjct: 119 MMKLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKL 177
>gi|359437044|ref|ZP_09227119.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas sp. BSi20311]
gi|358028303|dbj|GAA63368.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas sp. BSi20311]
Length = 408
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 96/182 (52%), Gaps = 11/182 (6%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F E L +++ A+ KMG P+ IQ IP L G+ ++ S+ +G+G+T A+L+P +Q
Sbjct: 3 FSEFDLDDKLLNAINKMGFETPTSIQQQAIPEALQGRDILASAPTGTGKTAAFLIPAIQY 62
Query: 203 L----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
L RRD P R +++ T E A Q + ++ L + GG++
Sbjct: 63 LMDFPRRD-------PGFARVLIMTPTRELAYQIHEQCELLAKQTHLKIGVVTGGINYGT 115
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+++ +LIATP +++++E N +++ ++LDEAD + D GF E+ +I N
Sbjct: 116 HKEIFENNNDILIATPGRLMEYLETENFHAENVEMLILDEADRMLDMGFRKEMLRICNEA 175
Query: 319 KD 320
K+
Sbjct: 176 KN 177
>gi|312797197|ref|YP_004030119.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454]
gi|312168972|emb|CBW75975.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454]
Length = 555
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 94/177 (53%), Gaps = 2/177 (1%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL +++AV ++G P+ IQ IPAVL G ++ + +G+G+T + LP+++
Sbjct: 8 SFNSLGLSEPLVRAVNELGYTTPTPIQRQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILE 67
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L A P+ RA++L T E A Q + +L S++ GGV D
Sbjct: 68 RLSHSRATSGKIPV--RALILTPTRELAAQVEQSVREYGKYLKLRSTVMFGGVGINPQID 125
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +++ATP +L H++ R + ++ +VLDEAD + D GF +I ++L L
Sbjct: 126 ALRRGVDIVVATPGRLLDHLQQRTIDLSSLQILVLDEADRMLDMGFIHDIKRVLKYL 182
>gi|383935744|ref|ZP_09989177.1| ATP-dependent RNA helicase RhlE [Rheinheimera nanhaiensis E407-8]
gi|383703063|dbj|GAB59268.1| ATP-dependent RNA helicase RhlE [Rheinheimera nanhaiensis E407-8]
Length = 444
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 97/180 (53%), Gaps = 2/180 (1%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ SFQ L L A +++ +++ G P+ +Q IP +L GK V+ + +G+G+T A+ LP
Sbjct: 27 ILMSFQSLALAAPILRVLQEQGYDAPTPVQRQSIPVILAGKDVLAGAQTGTGKTAAFTLP 86
Query: 199 LVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
L+Q + + + P R +VL T E A Q + + S S++ GGVS +
Sbjct: 87 LLQQMLNAPKV--VAPNQVRVLVLTPTRELAQQVYDNVRKYSQYLECRSAVFYGGVSIRP 144
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
D + + +L+ATP ++ H+ + V + +VLDEAD + D GF +I +I+ L
Sbjct: 145 QYDDAEQGLDILVATPGRLIDHLHQKTVDLSALEVLVLDEADRMLDMGFIVDIKRIMAKL 204
>gi|415770557|ref|ZP_11484900.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans D17P-2]
gi|348656730|gb|EGY74337.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans D17P-2]
Length = 443
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 94/176 (53%), Gaps = 11/176 (6%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F + L E++ A++K G P+ IQ IPA + G V+ S+ +G+G+T A+LLP +Q
Sbjct: 7 FADFDLAPELLNALQKKGYQRPTAIQQETIPAAMEGGDVLGSAPTGTGKTAAFLLPAIQH 66
Query: 203 L----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
L RR KP PR +VL T E A Q AK ++ + + GGV+ +
Sbjct: 67 LLDYPRR-------KPGAPRVLVLTPTRELAMQVAEQAKELACFTKRSIATITGGVAYQN 119
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
++ N +++ATP +LQ+I++ N C + ++ DEAD + GFG + KI
Sbjct: 120 HGEIFNKNQDIVVATPGRLLQYIKEENFDCRTVEILIFDEADRMLQMGFGQDAEKI 175
>gi|270260820|ref|ZP_06189093.1| ATP-dependent RNA helicase [Serratia odorifera 4Rx13]
gi|270044304|gb|EFA17395.1| ATP-dependent RNA helicase [Serratia odorifera 4Rx13]
Length = 452
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/179 (36%), Positives = 100/179 (55%), Gaps = 5/179 (2%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL AE+++AVE+ G P+ IQ IP VL G+ ++ S+ +G+G+T + LPL+Q
Sbjct: 2 SFETLGLSAEILRAVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 202 MLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSSKAL 259
+L + + P+K P RA++L T E A Q G ++ + H RL S + GGVS
Sbjct: 62 LLSKHDH--PIKGRRPVRALILTPTRELAAQIGENVEAYSKHL-RLRSLVVFGGVSINPQ 118
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +L+ATP +L V I +VLDEAD + D GF +I ++L L
Sbjct: 119 MMKLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKL 177
>gi|33594279|ref|NP_881923.1| ATP-dependent RNA helicase [Bordetella pertussis Tohama I]
gi|384205577|ref|YP_005591316.1| putative ATP-dependent RNA helicase [Bordetella pertussis CS]
gi|408417408|ref|YP_006628115.1| ATP-dependent RNA helicase [Bordetella pertussis 18323]
gi|33564354|emb|CAE43658.1| putative ATP-dependent RNA helicase [Bordetella pertussis Tohama I]
gi|332383691|gb|AEE68538.1| putative ATP-dependent RNA helicase [Bordetella pertussis CS]
gi|401779578|emb|CCJ65116.1| putative ATP-dependent RNA helicase [Bordetella pertussis 18323]
Length = 477
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 102/193 (52%), Gaps = 5/193 (2%)
Query: 131 KSSGSNAEVVS----SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSG 186
+S+ S+A V +F + GL ++K + G P+ IQ IP V+ G+ V+ ++
Sbjct: 3 ESTSSDAPVTDAPTRTFADFGLHPLLLKLIADTGYTNPTPIQAQAIPVVVEGRDVMGAAQ 62
Query: 187 SGSGRTLAYLLPLVQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARL 245
+G+G+T A+ LP++ L HP RA++L T E ADQ + K S L
Sbjct: 63 TGTGKTAAFTLPILHRLMPLANTSASPARHPVRALILTPTRELADQVYESVKRYSLHTPL 122
Query: 246 DSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDR 305
S++ GGV ++ +L+ATP +L H+E +NV+ + +VLDEAD + D
Sbjct: 123 RSAVVFGGVDIGPQKEALRRGCEVLVATPGRLLDHVEQKNVNLSQVGILVLDEADRMLDM 182
Query: 306 GFGPEISKILNPL 318
GF P++ +I+ L
Sbjct: 183 GFLPDLERIIRLL 195
>gi|358393875|gb|EHK43276.1| hypothetical protein TRIATDRAFT_32758 [Trichoderma atroviride IMI
206040]
Length = 903
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/220 (31%), Positives = 113/220 (51%), Gaps = 15/220 (6%)
Query: 122 LSNIASEREKSS--GSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGK 179
L AS R+ S+ G + FQ +GL A ++KA+ + G VP+ IQ IP VL +
Sbjct: 63 LQQAASYRKASNLKGRTVKKGGGFQAMGLNANILKAIARKGFSVPTPIQRKTIPLVLERR 122
Query: 180 SVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 239
VV + +GSG+T A+++P+++ LR + RA++L + E A Q + K +
Sbjct: 123 DVVGMARTGSGKTAAFVIPMIERLRAHSS-----KFGARALILSPSRELAIQTLKVVKEL 177
Query: 240 SHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 299
L + + GG S + +A ++IATP L + N+ I+YVV DEA
Sbjct: 178 GRGTDLKAVLLVGGDSLEEQFGFMSANPDIVIATPGRFLHLKVEMNLDLSSIKYVVFDEA 237
Query: 300 DTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 339
D LF+ GF ++++IL+ L S QT+L +A +
Sbjct: 238 DRLFEMGFATQLTEILHALPPSR--------QTLLFSATL 269
>gi|256079059|ref|XP_002575808.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
gi|353230863|emb|CCD77280.1| putative dead box ATP-dependent RNA helicase [Schistosoma mansoni]
Length = 625
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 109/208 (52%), Gaps = 12/208 (5%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
VSSF EL L ++K++ +M L P+ IQC IP L + + + +GSG+TLA+LLP+
Sbjct: 124 VSSFIELSLAKPLLKSLTEMSLDKPTPIQCACIPVALLHRDICACARTGSGKTLAFLLPV 183
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMA-KFISHCARLDSSMENGGVSSKA 258
++ L + RA+V+ T E A Q F++A K + +C +L + GG+ +
Sbjct: 184 LERLAKKST--DFNHAVTRALVISPTRELAVQIFNVAEKLVKYCPKLRIQLAAGGLDLHS 241
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDR-NVSCDDIRYVVLDEADTLFDRGFGPEISKILNP 317
E +++ATP ++ H+ + + + I Y+VLDEAD L D F +I +I
Sbjct: 242 QEASLRLNPDLVVATPGRLIDHLSNAPSFNLQHIEYLVLDEADKLLDEYFAEQIGEI--- 298
Query: 318 LKDSALKSNGQGFQTILVTAAIAEMLGE 345
+K QT+L +A + E + E
Sbjct: 299 -----IKFCSTKRQTLLFSATMTESVKE 321
>gi|421782261|ref|ZP_16218719.1| ATP-dependent RNA helicase [Serratia plymuthica A30]
gi|407755624|gb|EKF65749.1| ATP-dependent RNA helicase [Serratia plymuthica A30]
Length = 454
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/179 (36%), Positives = 100/179 (55%), Gaps = 5/179 (2%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL AE+++AVE+ G P+ IQ IP VL G+ ++ S+ +G+G+T + LPL+Q
Sbjct: 2 SFETLGLSAEILRAVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 202 MLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSSKAL 259
+L + + P+K P RA++L T E A Q G ++ + H RL S + GGVS
Sbjct: 62 LLSKHDH--PIKGRRPVRALILTPTRELAAQIGENVEAYSKHL-RLRSLVVFGGVSINPQ 118
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +L+ATP +L V I +VLDEAD + D GF +I ++L L
Sbjct: 119 MMKLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKL 177
>gi|292489103|ref|YP_003531990.1| ATP-dependent RNA helicase [Erwinia amylovora CFBP1430]
gi|292900225|ref|YP_003539594.1| ATP-dependent RNA helicase [Erwinia amylovora ATCC 49946]
gi|428786062|ref|ZP_19003545.1| ATP-dependent RNA helicase [Erwinia amylovora ACW56400]
gi|291200073|emb|CBJ47199.1| ATP-dependent RNA helicase [Erwinia amylovora ATCC 49946]
gi|291554537|emb|CBA22120.1| ATP-dependent RNA helicase [Erwinia amylovora CFBP1430]
gi|312173260|emb|CBX81515.1| ATP-dependent RNA helicase [Erwinia amylovora ATCC BAA-2158]
gi|426275457|gb|EKV53192.1| ATP-dependent RNA helicase [Erwinia amylovora ACW56400]
Length = 442
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 97/176 (55%), Gaps = 5/176 (2%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
V++F EL L +++++++ G P+ IQ IP L G+ V+ S+ +G+G+T AYLLP
Sbjct: 3 VTTFSELELDESLLQSLQEKGFTRPTAIQAEAIPPALEGRDVLGSAPTGTGKTAAYLLPA 62
Query: 200 VQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
+Q L P K P R ++L T E A Q A+ ++ RLD + GGV+
Sbjct: 63 LQHL----LDFPRKKSGPPRILILTPTRELAMQVADQARELAKHTRLDIATITGGVAFMN 118
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+V + +++AT +LQ+I++ N C + ++LDEAD + D GF +I I
Sbjct: 119 HAEVFSENQDVVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETI 174
>gi|448241070|ref|YP_007405123.1| ATP-dependent RNA helicase [Serratia marcescens WW4]
gi|445211434|gb|AGE17104.1| ATP-dependent RNA helicase [Serratia marcescens WW4]
Length = 459
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/179 (36%), Positives = 100/179 (55%), Gaps = 5/179 (2%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL AE+++AVE+ G P+ IQ IP VL G+ ++ S+ +G+G+T + LPL+Q
Sbjct: 2 SFETLGLSAEIVRAVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 202 MLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSSKAL 259
+L + + P+K P RA++L T E A Q G ++ + H RL S + GGVS
Sbjct: 62 LLSKHDH--PVKGRRPVRALILTPTRELAAQIGENVDAYSKHL-RLRSLVVFGGVSINPQ 118
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +L+ATP +L V I +VLDEAD + D GF +I ++L L
Sbjct: 119 MMKLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKL 177
>gi|217970063|ref|YP_002355297.1| DEAD/DEAH box helicase [Thauera sp. MZ1T]
gi|217507390|gb|ACK54401.1| DEAD/DEAH box helicase domain protein [Thauera sp. MZ1T]
Length = 545
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 93/175 (53%), Gaps = 1/175 (0%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF +LGL E+++AV G P+ IQ IP V+ GK V+ + +G+G+T + LPL+
Sbjct: 2 SFADLGLIPELLQAVTDAGYTEPTPIQRQAIPIVIAGKDVMGGAQTGTGKTAGFTLPLLH 61
Query: 202 MLRRDEALLPMKPMH-PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE 260
+ R H RA++L T E A Q F K S L S GGV + +
Sbjct: 62 RIARHANTSTSPARHQTRALILAPTRELAMQVFESVKTYSKHLPLRSVCVYGGVDIRPQQ 121
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
I ++IATP +L H+E ++++ + +VLDEAD + D GF P+I +IL
Sbjct: 122 AELRRGIEIVIATPGRLLDHLEQKSINLSQVEVLVLDEADRMLDMGFIPDIKRIL 176
>gi|84516715|ref|ZP_01004073.1| ATP-dependent RNA helicase RhlE [Loktanella vestfoldensis SKA53]
gi|84509183|gb|EAQ05642.1| ATP-dependent RNA helicase RhlE [Loktanella vestfoldensis SKA53]
Length = 498
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 97/176 (55%), Gaps = 4/176 (2%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++ F ++ L +++KAV + G P+ IQ IP L G+ V+ + +G+G+T A+ LP+
Sbjct: 1 MTKFSDMNLDPKVLKAVAETGYDTPTPIQDGAIPPALEGRDVLGIAQTGTGKTAAFTLPM 60
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
+ +L R A M PR++VL T E A Q + +L ++ GG S K
Sbjct: 61 ITLLGRGRARARM----PRSLVLAPTRELAAQVAENFDTYAKYTKLTKALLIGGTSFKDQ 116
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
+ + + + +LIATP +L H+E + D++ +V+DEAD + D GF P+I +I
Sbjct: 117 DKLIDKGVDVLIATPGRLLDHLERGKLILTDVKIMVVDEADRMLDMGFIPDIEEIF 172
>gi|328848641|gb|EGF97845.1| hypothetical protein MELLADRAFT_46164 [Melampsora larici-populina
98AG31]
Length = 659
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 123/226 (54%), Gaps = 11/226 (4%)
Query: 95 KLRKLNGSAKTNNPENKPSPPQPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIK 154
K ++ NG K N E P+ P+ L+ A +S S+ +V+ F L L K
Sbjct: 86 KRKQKNGKRKDNADEGSPATAGPD---LTTFA--ESSASASDKPLVTEFTSLNLSPGTAK 140
Query: 155 AVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKP 214
A+E+MG +E+Q IP ++ G+ V+ ++ +GSG+TLA+L+P V+ML R L KP
Sbjct: 141 AIEEMGFKHMTEVQARTIPPLMTGRDVLGAARTGSGKTLAFLVPAVEMLSR----LQFKP 196
Query: 215 MHPR-AIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIAT 273
+ AI++ T E A Q F +A+ + ++ GG + KA + + +LI+T
Sbjct: 197 RNGTGAIIVSPTRELALQIFGVAQELMKHHSQTFAITIGGANRKAEAEKLIKGVNLLIST 256
Query: 274 PSEVLQHIED-RNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
P +L H+++ + +++ +++DEAD + + GF E+ KI++ L
Sbjct: 257 PGRLLDHLQNTKGFVFSNLKALIIDEADRILEIGFEDEMRKIISLL 302
>gi|340723049|ref|XP_003399911.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase
DDX54-like [Bombus terrestris]
Length = 772
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 113/226 (50%), Gaps = 20/226 (8%)
Query: 118 EQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLN 177
E +++NI + K SG FQ + L ++K + + G +P+ IQ IP L
Sbjct: 20 EDNEINNIKKKVCKKSGG-------FQSMALSFPLLKGILRRGYKIPTPIQRKTIPLALE 72
Query: 178 GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK 237
G+ VV + +GSG+T +L+PL + L+ A RA++L T E A Q K
Sbjct: 73 GRDVVAMARTGSGKTACFLIPLFEKLKTRRA-----KAGARALILSPTRELALQTLKFIK 127
Query: 238 FISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLD 297
+ L +++ GG S + + +L+ATP L + ++ ++I YVV D
Sbjct: 128 ELGKFTDLKAAVILGGDSMENQFSAIHGNPDILVATPGRFLHICIEMDLQLNNIEYVVFD 187
Query: 298 EADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEML 343
EAD LF+ GFG +I++I N L +S QT+L +A + ++L
Sbjct: 188 EADRLFEMGFGEQITEITNRLPESR--------QTLLFSATLPKLL 225
>gi|294055756|ref|YP_003549414.1| DEAD/DEAH box helicase [Coraliomargarita akajimensis DSM 45221]
gi|293615089|gb|ADE55244.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis
DSM 45221]
Length = 406
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 119/225 (52%), Gaps = 13/225 (5%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+++F++LGL ++ AVE+ G P+ IQ IP +++G+ V+ S+ +G+G+T A+ LP
Sbjct: 1 MTTFKDLGLAPAILSAVEEAGYTEPTPIQAGAIPHIIDGRDVIGSAQTGTGKTAAFALPA 60
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
+ L + + K PR +VL T E A Q + A+L ++ +GGV
Sbjct: 61 LHRLGKHQ-----KGAAPRCLVLGPTRELAAQVKEQFEKYGKDAQLKCALIHGGVGYGRQ 115
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319
A ++IATP ++ H++ R ++ ++LDE D + D GF ++ KI+
Sbjct: 116 RQELEAGADVVIATPGRLIDHVQQRTADLRNVDLLILDEVDRMLDMGFIDDVKKIIK--- 172
Query: 320 DSALKSNGQGFQTILVTAAIAEMLGEQLS-SLMECLERDNAGKVT 363
+ QG QT+L +A ++E + ++ SL + +E A K+T
Sbjct: 173 ----FCSKQGRQTLLFSATVSEEIKRLIARSLKDPVEVAIAVKIT 213
>gi|257790938|ref|YP_003181544.1| DEAD/DEAH box helicase [Eggerthella lenta DSM 2243]
gi|257474835|gb|ACV55155.1| DEAD/DEAH box helicase domain protein [Eggerthella lenta DSM 2243]
Length = 414
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 109/218 (50%), Gaps = 25/218 (11%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
S+FQ+LGL + AVE+MG P+ +Q IP VL G+ VV ++ +G+G+T A+ LPL
Sbjct: 3 STFQDLGLSETTLSAVERMGFTAPTPVQEQAIPLVLEGRDVVAAATTGTGKTAAFALPLF 62
Query: 201 QMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMEN------GGV 254
+ + R + +P PRA+V+ T E Q + C +L + GG
Sbjct: 63 ERIGRAK-----RPGSPRALVVSPTRELTQQ------IDAACTQLAKASNRRMLTVMGGT 111
Query: 255 SSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
K + I +L+ATP + +E V D+ +VLDEAD + D GF P + K+
Sbjct: 112 KYKGQIAKLDRGIDVLVATPGRLYDLMERGVVKLRDVEVLVLDEADRMLDMGFWPTMKKV 171
Query: 315 LNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLME 352
+ S QT+L +A + + + +SS+++
Sbjct: 172 VAATPSSR--------QTLLFSATLDRKVMQSVSSILK 201
>gi|327353326|gb|EGE82183.1| ATP-dependent RNA helicase DBP10 [Ajellomyces dermatitidis ATCC
18188]
Length = 945
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 110/204 (53%), Gaps = 15/204 (7%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
FQ +GL A ++KA+ + G VP+ IQ IP +L+ + VV + +GSG+T A+++P+++
Sbjct: 88 FQSMGLNATLLKAITRKGFSVPTPIQRKTIPLLLDDQDVVGMARTGSGKTAAFVIPMIEK 147
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS-SKALED 261
L+ A RA++L + E A Q + K + L S + GG S + E
Sbjct: 148 LKNHSA-----KFGSRALILSPSRELALQTLKVVKELGRGTDLKSVLLVGGDSLEEQFEY 202
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDS 321
++ P ++IATP L + ++ IRYVV DEAD LF+ GF ++++IL+ L S
Sbjct: 203 MAGNP-DIIIATPGRFLHLKVEMSLDLSSIRYVVFDEADRLFEMGFAAQLTEILHGLPSS 261
Query: 322 ALKSNGQGFQTILVTAAIAEMLGE 345
QT+L +A + + L E
Sbjct: 262 R--------QTLLFSATLPKSLVE 277
>gi|157108214|ref|XP_001650127.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
gi|65306807|gb|AAY41941.1| vasa-like protein [Aedes aegypti]
gi|108879362|gb|EAT43587.1| AAEL004978-PA [Aedes aegypti]
Length = 638
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 99/177 (55%), Gaps = 2/177 (1%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF + GL+ +++ + K P+ IQ IP +++ + ++ + +GSG+T A+LLP+
Sbjct: 214 IKSFGDSGLRDYLLQNIRKSHYTKPTPIQKYAIPIIMDKRDLMACAQTGSGKTAAFLLPM 273
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
+ L D A M P +P +++ T E A Q F+ A+ + L + GG +++
Sbjct: 274 INTLLNDNA--DMVPGNPFVVIIAPTRELALQIFNEARKFALGTVLKVCVAYGGTATRHQ 331
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
D +L+ATP +L ++ + V+ + +++VVLDEAD + D GF P + K++N
Sbjct: 332 MDNIQNGCHILVATPGRLLDFVDKQAVTFERVKFVVLDEADRMLDMGFMPSVEKMMN 388
>gi|42522889|ref|NP_968269.1| RNA helicase [Bdellovibrio bacteriovorus HD100]
gi|39574085|emb|CAE79262.1| RNA helicase [Bdellovibrio bacteriovorus HD100]
Length = 460
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 130/232 (56%), Gaps = 13/232 (5%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+++F + L ++K ++ + + P++IQ IP +++ ++VV S +GSG+TLAY+LP+
Sbjct: 53 MNTFADFELLPSLLKTLKTLKISKPTDIQKQAIPLIMSHQAVVGVSETGSGKTLAYVLPI 112
Query: 200 VQMLRR-DEALLPMKPMH-PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
+ L+ +E+ P+K + PRA+V+ + E +Q + K ++H RL GG+S +
Sbjct: 113 LNYLKSLEESGDPVKEENAPRAVVMVPSRELGEQVAKVFKSMTHDTRLRVRPALGGMSLE 172
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNP 317
++ +L+ATP ++Q + +S D+R+++ DEAD + D+GF P+ ++I++
Sbjct: 173 QARRNTSGAFEVLLATPGRLVQMLNKDLISLRDVRFLIFDEADQMLDQGFLPDTNRIVDC 232
Query: 318 LKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLM---ECLERDNAGKVTAML 366
+ L +A +++ + + ++ L E + N+GKV + L
Sbjct: 233 CPEDV--------NLALFSATVSKTVEKLMNDLFAKAEVIRSKNSGKVVSTL 276
>gi|28901323|ref|NP_800978.1| DEAD-box ATP dependent DNA helicase [Vibrio parahaemolyticus RIMD
2210633]
gi|417323065|ref|ZP_12109595.1| DEAD-box ATP dependent DNA helicase [Vibrio parahaemolyticus 10329]
gi|28809870|dbj|BAC62811.1| ATP-dependent RNA helicase, DEAD box family [Vibrio
parahaemolyticus RIMD 2210633]
gi|328469261|gb|EGF40207.1| DEAD-box ATP dependent DNA helicase [Vibrio parahaemolyticus 10329]
Length = 448
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 94/181 (51%), Gaps = 11/181 (6%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F++LGL ++K ++ P++IQ IP + GK ++ SS +GSG+TLA++LP M
Sbjct: 7 FKDLGLDNRLLKNLKHYDFKKPTDIQKQAIPVAIAGKDLLASSKTGSGKTLAFVLP---M 63
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGF----HMAKFISHCARLDSSMENGGVSSKA 258
L + PRA++L T E A Q + M +S+ A L EN KA
Sbjct: 64 LHKSLKTKSFSAKDPRAVILAPTRELAKQVYGELRSMLAGLSYDAALILGGENFNDQVKA 123
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
L ++ATP + H+E R++ D + ++LDEAD + D GF PE+ +I N
Sbjct: 124 LRRYPK----FIVATPGRLADHLEHRSLYLDGLETLILDEADRMLDLGFAPELRRIHNAA 179
Query: 319 K 319
K
Sbjct: 180 K 180
>gi|359441938|ref|ZP_09231822.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas sp. BSi20429]
gi|359454227|ref|ZP_09243517.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas sp. BSi20495]
gi|392533342|ref|ZP_10280479.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas arctica A
37-1-2]
gi|414070202|ref|ZP_11406189.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas sp. Bsw20308]
gi|358036199|dbj|GAA68071.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas sp. BSi20429]
gi|358048750|dbj|GAA79766.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas sp. BSi20495]
gi|410807300|gb|EKS13279.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas sp. Bsw20308]
Length = 408
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 96/182 (52%), Gaps = 11/182 (6%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F E L +++ A+ KMG P+ IQ IP L G+ ++ S+ +G+G+T A+L+P +Q
Sbjct: 3 FSEFDLDNKLLDAINKMGYETPTSIQQQAIPEALQGRDILASAPTGTGKTAAFLIPAIQY 62
Query: 203 L----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
L RRD P R +V+ T E A Q + ++ L + GG++
Sbjct: 63 LLDFPRRD-------PGFARVLVMTPTRELAYQIHEQCELLAKRTHLKIGVVTGGINYGT 115
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+++ +LIATP +++++E N + + +++DEAD + D GF E+S+I +
Sbjct: 116 HKEIFEKNNDILIATPGRLMEYLETENFHAEHVEMLIIDEADRMLDMGFKKEMSRICDEA 175
Query: 319 KD 320
K+
Sbjct: 176 KN 177
>gi|153835973|ref|ZP_01988640.1| ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AQ3810]
gi|308094943|ref|ZP_05892523.2| ATP-dependent RNA helicase, DEAD-box family [Vibrio
parahaemolyticus AN-5034]
gi|308095142|ref|ZP_05903781.2| ATP-dependent RNA helicase, DEAD-box family [Vibrio
parahaemolyticus Peru-466]
gi|308125529|ref|ZP_05775749.2| ATP-dependent RNA helicase, DEAD-box family [Vibrio
parahaemolyticus K5030]
gi|433660511|ref|YP_007301370.1| ATP-dependent RNA helicase [Vibrio parahaemolyticus BB22OP]
gi|149750727|gb|EDM61472.1| ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AQ3810]
gi|308085569|gb|EFO35264.1| ATP-dependent RNA helicase, DEAD-box family [Vibrio
parahaemolyticus Peru-466]
gi|308092338|gb|EFO42033.1| ATP-dependent RNA helicase, DEAD-box family [Vibrio
parahaemolyticus AN-5034]
gi|308112170|gb|EFO49710.1| ATP-dependent RNA helicase, DEAD-box family [Vibrio
parahaemolyticus K5030]
gi|432511898|gb|AGB12715.1| ATP-dependent RNA helicase [Vibrio parahaemolyticus BB22OP]
Length = 444
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 94/181 (51%), Gaps = 11/181 (6%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F++LGL ++K ++ P++IQ IP + GK ++ SS +GSG+TLA++LP M
Sbjct: 3 FKDLGLDNRLLKNLKHYDFKKPTDIQKQAIPVAIAGKDLLASSKTGSGKTLAFVLP---M 59
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGF----HMAKFISHCARLDSSMENGGVSSKA 258
L + PRA++L T E A Q + M +S+ A L EN KA
Sbjct: 60 LHKSLKTKSFSAKDPRAVILAPTRELAKQVYGELRSMLAGLSYDAALILGGENFNDQVKA 119
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
L ++ATP + H+E R++ D + ++LDEAD + D GF PE+ +I N
Sbjct: 120 LRRYPK----FIVATPGRLADHLEHRSLYLDGLETLILDEADRMLDLGFAPELRRIHNAA 175
Query: 319 K 319
K
Sbjct: 176 K 176
>gi|417952452|ref|ZP_12595511.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|342819268|gb|EGU54114.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891 = ATCC
33934]
Length = 447
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 96/181 (53%), Gaps = 11/181 (6%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F++LGL ++K ++ +EIQ IP + GK ++ SS +GSG+TLA++LP++
Sbjct: 7 FKDLGLDNRLLKNLKHFDFKKATEIQQKAIPVAIAGKDLLASSKTGSGKTLAFVLPMLHK 66
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGF----HMAKFISHCARLDSSMENGGVSSKA 258
+++A PRA+VL T E A Q + M +S+ A L EN KA
Sbjct: 67 SLKNKAF---SAKDPRALVLAPTRELAKQVYGELRSMLGGLSYDATLIVGGENFNDQVKA 123
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
L ++ATP + H+E R++ D + +VLDEAD + D GF PE+ +I N
Sbjct: 124 LRKYPK----FIVATPGRLADHLEHRSLFLDGLETLVLDEADRMLDLGFAPELRRIHNAA 179
Query: 319 K 319
K
Sbjct: 180 K 180
>gi|239613976|gb|EEQ90963.1| ATP-dependent RNA helicase DBP10 [Ajellomyces dermatitidis ER-3]
Length = 945
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 110/204 (53%), Gaps = 15/204 (7%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
FQ +GL A ++KA+ + G VP+ IQ IP +L+ + VV + +GSG+T A+++P+++
Sbjct: 88 FQSMGLNATLLKAITRKGFSVPTPIQRKTIPLLLDDQDVVGMARTGSGKTAAFVIPMIEK 147
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS-SKALED 261
L+ A RA++L + E A Q + K + L S + GG S + E
Sbjct: 148 LKNHSA-----KFGSRALILSPSRELALQTLKVVKELGRGTDLKSVLLVGGDSLEEQFEY 202
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDS 321
++ P ++IATP L + ++ IRYVV DEAD LF+ GF ++++IL+ L S
Sbjct: 203 MAGNP-DIIIATPGRFLHLKVEMSLDLSSIRYVVFDEADRLFEMGFAAQLTEILHGLPSS 261
Query: 322 ALKSNGQGFQTILVTAAIAEMLGE 345
QT+L +A + + L E
Sbjct: 262 R--------QTLLFSATLPKSLVE 277
>gi|221211314|ref|ZP_03584293.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
CGD1]
gi|221168675|gb|EEE01143.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
CGD1]
Length = 480
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 94/177 (53%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL ++KAV ++G P+ IQ IPAVL G ++ + +G+G+T + LP++Q
Sbjct: 2 SFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L RA++L T E A Q + S +L S++ GGVS D
Sbjct: 62 RLHTFYTEHRSAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQID 121
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +++ATP +L H++ + + D+ +VLDEAD + D GF +I ++L L
Sbjct: 122 ALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKL 178
>gi|392552241|ref|ZP_10299378.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas spongiae
UST010723-006]
Length = 409
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 99/182 (54%), Gaps = 11/182 (6%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F +L L +++ A+EKMG P+ IQ + IPA + G+ ++ SS +G+G+T A+LL +Q
Sbjct: 3 FADLDLDPKLLNAIEKMGFDKPTSIQSLAIPAAMKGRDILASSPTGTGKTAAFLLGSMQY 62
Query: 203 L----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
L RR+ P R +++ T E A Q + A ++ L + GG++ +
Sbjct: 63 LIDFPRRN-------PGFARVLIMTPTRELAYQVYEQANALAAQTHLKIGVVTGGINYGS 115
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+++ +LIATP ++ ++ N +D+ ++LDEAD + D GF E+ +I +
Sbjct: 116 HKEIFEKNNDILIATPGRLMDYLNSENFHAEDVEVLILDEADRMLDMGFRKEMLRICDEA 175
Query: 319 KD 320
K+
Sbjct: 176 KN 177
>gi|260773840|ref|ZP_05882755.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14]
gi|260610801|gb|EEX36005.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14]
Length = 420
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 95/177 (53%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F +LG+ +++++ +G+ P+EIQ IP VL G V+ + +G+G+T A+ LPL+Q
Sbjct: 7 TFLDLGIAPTLVESLNALGIETPTEIQIQAIPPVLAGHDVLAGAQTGTGKTAAFGLPLLQ 66
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L + + + RA+VL T E A Q F + + L + GG S +
Sbjct: 67 RLAASKTDVDVSSKDIRALVLVPTRELAQQVFDSLTAYAKGSELKVVVAYGGTSMSVQKQ 126
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+LIATP +L H +++ +++ +VLDEAD + D GF P+I ++L L
Sbjct: 127 HLRGGADVLIATPGRLLDHAHVKSLYLGNVQTLVLDEADRMLDMGFMPDIQRVLRKL 183
>gi|390341643|ref|XP_784918.3| PREDICTED: probable ATP-dependent RNA helicase DDX31-like
[Strongylocentrotus purpuratus]
Length = 718
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 116/214 (54%), Gaps = 15/214 (7%)
Query: 136 NAEVVSS---FQELGLKAEMIKAVEK-MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGR 191
N E + S F EL L + MI +EK +G + +Q IP +L+G+ ++ S +G+G+
Sbjct: 105 NKEAIFSSTQFSELPLHSFMISNIEKNLGFSQMTTVQQRAIPTLLHGQDTLIKSQTGTGK 164
Query: 192 TLAYLLPLVQMLRRDEALLP-MKPMH-PRAIVLCTTEESADQGFH-MAKFISHCARLDSS 248
TLAY +P+VQ L + L P ++ +H P A++L T E A Q F + K + +
Sbjct: 165 TLAYAVPVVQQL---QGLQPKVQRLHGPYALILVPTRELACQSFETLVKLVKPFHWIVPG 221
Query: 249 MENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRN-VSCDDIRYVVLDEADTLFDRGF 307
+ GG K+ + I +L++TP ++ HI ++ +R+V+LDEAD L D GF
Sbjct: 222 VLMGGEKKKSEKGRIRKGINILVSTPGRLVDHINTTEALTFSRVRWVILDEADRLLDLGF 281
Query: 308 GPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 341
+++ ILN + + QT+LV+A ++E
Sbjct: 282 EKDVTTILNAINEQCQNQK----QTVLVSATLSE 311
>gi|320538877|ref|ZP_08038553.1| putative RNA helicase [Serratia symbiotica str. Tucson]
gi|320031037|gb|EFW13040.1| putative RNA helicase [Serratia symbiotica str. Tucson]
Length = 437
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/178 (37%), Positives = 97/178 (54%), Gaps = 4/178 (2%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL AE+++AVE+ G P+ IQ IP VL G+ ++ S+ +G+G+T + LPL+Q
Sbjct: 2 SFKTLGLSAEILRAVEEQGYREPTPIQRQAIPMVLAGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 202 MLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE 260
+L + E P K P RA++L T E A Q S RL S + GGVS
Sbjct: 62 LLSQHEQ--PAKGRRPVRALILTPTRELAAQIGENVDAYSKYLRLRSLVVFGGVSINPQM 119
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +L+ATP +L +E V I +VLDEAD + D GF +I ++L L
Sbjct: 120 MKLRGGVDILVATPGRLLD-LEQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKL 176
>gi|406911902|gb|EKD51608.1| hypothetical protein ACD_62C00220G0002 [uncultured bacterium]
Length = 421
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 97/174 (55%), Gaps = 1/174 (0%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL E+++AV+ G VP+ IQ IP +LN + ++ S+ +G+G+T + LPL+Q
Sbjct: 2 SFENLGLSPELLQAVQGQGYSVPTPIQTKAIPLILNKQDILGSAQTGTGKTAGFTLPLLQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L ++ K H RA++L T E A Q + L S++ GGV+ +A
Sbjct: 62 RLMLEKKNGGGK-RHIRALILTPTRELAAQVCKSVETYGKHLPLRSTVVFGGVNMEAQVR 120
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
+ +++ATP +L HI R + + ++LDEAD + D GF P++ +I+
Sbjct: 121 RLQYGVDIVVATPGRLLDHIGQRTIDLSRVDVLILDEADRMLDMGFIPDVKRII 174
>gi|363746590|ref|XP_003643723.1| PREDICTED: probable ATP-dependent RNA helicase DDX41-like, partial
[Gallus gallus]
Length = 497
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 110/207 (53%), Gaps = 15/207 (7%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 55 IKSFKEMKFPAAILRGLKKKGIQQPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 114
Query: 200 VQMLRRDEALLPM-KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDS------SMENG 252
+ E LP K P +++C + E A Q + ++ + DS ++ G
Sbjct: 115 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGIIEYYCRLLQEDSLPPLRCALCIG 174
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
G+S K + + M++ATP ++ ++ + VS D RY+ LDEAD + D GF +I
Sbjct: 175 GMSVKEQMETIKHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 234
Query: 313 KILNPLKDSALKSNGQGFQTILVTAAI 339
I + K GQ QT+L +A +
Sbjct: 235 TIFSYFK-------GQR-QTLLFSATM 253
>gi|213402583|ref|XP_002172064.1| ATP-dependent RNA helicase dbp10 [Schizosaccharomyces japonicus
yFS275]
gi|212000111|gb|EEB05771.1| ATP-dependent RNA helicase dbp10 [Schizosaccharomyces japonicus
yFS275]
Length = 854
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 112/209 (53%), Gaps = 21/209 (10%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
++FQ +GL M++A+ K G P+ IQ IP VL+G+ VV + +GSG+T A+++P++
Sbjct: 65 TNFQSMGLSTTMLRAITKKGFKAPTPIQRKTIPFVLDGRDVVGMARTGSGKTAAFVIPMI 124
Query: 201 QMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE 260
+ L+ A RAI+L + E A Q + K S L +++ GG + LE
Sbjct: 125 EKLKASRA-----QSGSRAIILSPSRELALQTMKVVKDFSKDTNLRTAVIVGG---EGLE 176
Query: 261 D----VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ ++N P +++ATP L + + I YVV DEAD LF+ GF ++++IL+
Sbjct: 177 EQFSILTNKP-DIIVATPGRFLHLKVEMKLELGSIEYVVFDEADRLFEMGFAAQLTEILH 235
Query: 317 PLKDSALKSNGQGFQTILVTAAIAEMLGE 345
L S QT+L +A + + L E
Sbjct: 236 GLPSSR--------QTLLFSATLPKNLVE 256
>gi|226502877|ref|NP_001146459.1| uncharacterized protein LOC100280046 [Zea mays]
gi|219887353|gb|ACL54051.1| unknown [Zea mays]
gi|413957213|gb|AFW89862.1| putative DEAD-box ATP-dependent RNA helicase family protein [Zea
mays]
Length = 655
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 91/170 (53%), Gaps = 4/170 (2%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+E+G EM+ A+ PS IQ + +L G+S V++ SGSG+TLAYL P++Q
Sbjct: 255 SFKEIGCSDEMLGALRNFDFPRPSHIQAMAYGPILEGRSCVVADQSGSGKTLAYLCPIIQ 314
Query: 202 MLRRDE--ALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR-LDSSMENGGVSSKA 258
LR +E L P +PR IVL T E A Q + + IS S + GG K
Sbjct: 315 NLRNEEVQGLHKSSPRNPRVIVLTPTAELASQVLNNCRLISKSGVPFRSMVATGGFRQKT 374
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF-DRGF 307
+ + + ++IATP L +++ V ++R VVLDE D LF + GF
Sbjct: 375 QLESLDQELDVIIATPGRFLYLLQEGFVQLANLRCVVLDEVDILFGEEGF 424
>gi|441504046|ref|ZP_20986043.1| ATP-dependent RNA helicase [Photobacterium sp. AK15]
gi|441428219|gb|ELR65684.1| ATP-dependent RNA helicase [Photobacterium sp. AK15]
Length = 446
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 126/254 (49%), Gaps = 14/254 (5%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F++LGL +IK + + P+EIQ IP + GK ++ SS +GSG+TLA+LLP +Q
Sbjct: 3 FKDLGLDQRLIKKLNHLAFDKPTEIQQTAIPVAILGKDLLASSKTGSGKTLAFLLPAMQR 62
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS-SKALED 261
+ R + P PR ++L T E A Q F + + D ++ GG + + ++
Sbjct: 63 MYRCK---PFTRRDPRVLILTPTRELAKQVFAQLRTLIAGTPYDGALVVGGENFNDQVKA 119
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDS 321
P+ ++ATP + H+E R+ D + ++LDEAD + D GF ++ +I
Sbjct: 120 FRKDPM-FVVATPGRLADHLEHRSTHLDGLEMLILDEADRMLDLGFEAQLRRIHEA---- 174
Query: 322 ALKSNGQGFQTILVTAAIAEM-LGEQLSSLMECLERDNAGKVTAMLLEMDQAEVF-DLTE 379
+N + QT++ +A + + S ++ +R + G ++ Q + D +
Sbjct: 175 ---ANHRRRQTLMFSATLDHTDVASIASDMLNAPKRISIGHSAEQHTDITQRFMLCDHLD 231
Query: 380 SQDALKKKVVEAMD 393
+ AL K++E D
Sbjct: 232 HKQALLDKILETED 245
>gi|407406718|gb|EKF30898.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi
marinkellei]
Length = 755
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 121/236 (51%), Gaps = 23/236 (9%)
Query: 138 EVVSSFQELGLKAEMIKAV-EKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYL 196
+ V+SF+++ L E+ KA+ + + +F PS IQ + I ++ GK V+++ G G+TLAYL
Sbjct: 82 KTVTSFEDMLLAPELRKALMQSLHIFTPSPIQQMAIKVIVQGKDTVVAAPHGEGKTLAYL 141
Query: 197 LPLVQ--MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGV 254
LPL Q M RD +P++ PR I+L T+E Q H+ CA LD++ +
Sbjct: 142 LPLYQNMMKDRDVYKIPLRERRPRMILLAPTKELIAQLQHI------CATLDAATGLRSI 195
Query: 255 S----SKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRG 306
S +A +S N ++I P VL+ I R + DDIRYV +DEAD +
Sbjct: 196 SFTSRKRAKYHLSRLLKNTLADVVIMDPKVVLRLIRSRRLFLDDIRYVAVDEADVMLSSQ 255
Query: 307 FGPEISKILNPLKDSALKSNGQGF--QTILVTAAIAE----MLGEQLSSLMECLER 356
+ +L ++ + + QT+ TA I ++G++ + + CL+R
Sbjct: 256 HDHDAVHLLMKVQKRMMFKHLWPVQTQTVFATAYITRKLEFVIGKKFPNAVTCLQR 311
>gi|359492294|ref|XP_002279081.2| PREDICTED: putative DEAD-box ATP-dependent RNA helicase 29-like
[Vitis vinifera]
Length = 784
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 114/205 (55%), Gaps = 16/205 (7%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F+ LGL + +A+++ G VP+ IQ +P +L+G VV + +GSG+T A+L+P+++
Sbjct: 29 FESLGLSPNVYRAIKRKGYRVPTPIQRKTMPLILSGCDVVAMARTGSGKTAAFLIPMLER 88
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA-LED 261
L++ +P + RA++L T + A Q K ++ + S+ GG S ++ E+
Sbjct: 89 LKQH---VPQTGV--RALILSPTRDLALQTLKFTKELARYTDVRISLLVGGDSMESQFEE 143
Query: 262 VSNAPIGMLIATPSEVLQHI-EDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 320
++ P ++IATP ++ H+ E ++S + YVV DEAD LF GF ++ KIL L D
Sbjct: 144 LAQNP-DIIIATPGRLMHHLSEVDDMSLRTVEYVVFDEADCLFGMGFAEQLHKILAQLSD 202
Query: 321 SALKSNGQGFQTILVTAAIAEMLGE 345
+ QT+L +A + L E
Sbjct: 203 NR--------QTLLFSATLPSALAE 219
>gi|350423736|ref|XP_003493575.1| PREDICTED: ATP-dependent RNA helicase DDX54-like [Bombus impatiens]
Length = 772
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 114/226 (50%), Gaps = 20/226 (8%)
Query: 118 EQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLN 177
E +++NI + K SG FQ + L ++K + + G +P+ IQ IP L
Sbjct: 20 EDSEINNIKKKVCKKSGG-------FQSMALSFPLLKGILRRGYKIPTPIQRKTIPLALE 72
Query: 178 GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK 237
G+ +V + +GSG+T +L+PL + L+ +A RA++L T E A Q K
Sbjct: 73 GRDIVAMARTGSGKTACFLIPLFEKLKTRQA-----KAGARALILSPTRELALQTLKFIK 127
Query: 238 FISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLD 297
+ L +++ GG S + + +L+ATP L + ++ ++I YVV D
Sbjct: 128 ELGKFTDLKAAVILGGDSMENQFSAIHGNPDILVATPGRFLHICIEMDLQLNNIEYVVFD 187
Query: 298 EADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEML 343
EAD LF+ GFG +I++I N L +S QT+L +A + ++L
Sbjct: 188 EADRLFEMGFGEQITEITNRLPESR--------QTLLFSATLPKLL 225
>gi|262275389|ref|ZP_06053199.1| ATP-dependent RNA helicase RhlE [Grimontia hollisae CIP 101886]
gi|262220634|gb|EEY71949.1| ATP-dependent RNA helicase RhlE [Grimontia hollisae CIP 101886]
Length = 436
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/177 (35%), Positives = 93/177 (52%), Gaps = 3/177 (1%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
F ELGL A +++A+++ G PS IQ IPAVL GK V+ ++ +G+G+T ++LP+++
Sbjct: 2 GFTELGLSAPILRAIQEKGYDTPSPIQMQAIPAVLEGKDVMAAAQTGTGKTAGFVLPILE 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L +P H RA++L T E A Q A S L SS+ GGV
Sbjct: 62 RLSNGGR---TRPNHVRALILTPTRELAAQIHENAVVYSRHLPLRSSVVFGGVKINPQMM 118
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+L+ATP +L + V + +VLDEAD + D GF +I KIL+ L
Sbjct: 119 ALRKGTDILVATPGRLLDLYQQNAVKFSQLEVLVLDEADRMLDMGFFRDIKKILDLL 175
>gi|413957214|gb|AFW89863.1| putative DEAD-box ATP-dependent RNA helicase family protein [Zea
mays]
Length = 649
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 91/170 (53%), Gaps = 4/170 (2%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+E+G EM+ A+ PS IQ + +L G+S V++ SGSG+TLAYL P++Q
Sbjct: 249 SFKEIGCSDEMLGALRNFDFPRPSHIQAMAYGPILEGRSCVVADQSGSGKTLAYLCPIIQ 308
Query: 202 MLRRDE--ALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR-LDSSMENGGVSSKA 258
LR +E L P +PR IVL T E A Q + + IS S + GG K
Sbjct: 309 NLRNEEVQGLHKSSPRNPRVIVLTPTAELASQVLNNCRLISKSGVPFRSMVATGGFRQKT 368
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF-DRGF 307
+ + + ++IATP L +++ V ++R VVLDE D LF + GF
Sbjct: 369 QLESLDQELDVIIATPGRFLYLLQEGFVQLANLRCVVLDEVDILFGEEGF 418
>gi|410860551|ref|YP_006975785.1| ATP-dependent RNA helicase SrmB [Alteromonas macleodii AltDE1]
gi|410817813|gb|AFV84430.1| ATP-dependent RNA helicase SrmB [Alteromonas macleodii AltDE1]
Length = 408
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 94/174 (54%), Gaps = 5/174 (2%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F+EL L + A MG P+ IQ + IP L+G+ ++ S+ +G+G+T A+LLP Q
Sbjct: 2 TFEELELDDALCHAAADMGFEAPTNIQELVIPHALDGRDILASAPTGTGKTAAFLLPACQ 61
Query: 202 MLRRDEALLPMK-PMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE 260
L P K P R ++L T E A Q + A I+ +L + GG++ +
Sbjct: 62 FLLD----YPRKQPGATRILILTPTRELALQVYEQAVAITKHTQLVCGVITGGINYGTDK 117
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+ + + +L+ATP +L+HIE C DI ++LDEAD + D GF +++I
Sbjct: 118 ETLSKNLDILVATPGRLLEHIEKEAADCRDIECLILDEADRMLDMGFSTVVNQI 171
>gi|390949101|ref|YP_006412860.1| DNA/RNA helicase [Thiocystis violascens DSM 198]
gi|390425670|gb|AFL72735.1| DNA/RNA helicase, superfamily II [Thiocystis violascens DSM 198]
Length = 439
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 100/178 (56%), Gaps = 6/178 (3%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL+A++++AV P+ IQ IP +L G ++ + +G+G+T A++LPL+Q
Sbjct: 2 SFDSLGLRADLLRAVASQRYGRPTPIQAQAIPVILAGHDLLAGAQTGTGKTAAFVLPLLQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSSKALE 260
+L E P + PRA++L T E A Q G + + H + L S++ GGV +
Sbjct: 62 LL--AEKGHPQR--QPRALILTPTRELAAQIGERVHAYGIHLS-LRSTVIFGGVGMQPQV 116
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ + + +L+ATP +L H R + I +VLDEAD + D GF ++ +I+N L
Sbjct: 117 NQLHRGVDILVATPGRLLDHAGQRTLDLSRIEILVLDEADRMLDMGFIHDVKRIINLL 174
>gi|332140339|ref|YP_004426077.1| ATP-dependent RNA helicase SrmB [Alteromonas macleodii str. 'Deep
ecotype']
gi|327550361|gb|AEA97079.1| ATP-dependent RNA helicase SrmB [Alteromonas macleodii str. 'Deep
ecotype']
Length = 408
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 94/174 (54%), Gaps = 5/174 (2%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F+EL L + A MG P+ IQ + IP L+G+ ++ S+ +G+G+T A+LLP Q
Sbjct: 2 TFEELELDDALCHAAADMGFEAPTNIQELVIPHALDGRDILASAPTGTGKTAAFLLPACQ 61
Query: 202 MLRRDEALLPMK-PMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE 260
L P K P R ++L T E A Q + A I+ +L + GG++ +
Sbjct: 62 FLLD----YPRKQPGATRILILTPTRELALQVYEQAVAITKHTQLVCGVITGGINYGTDK 117
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+ + + +L+ATP +L+HIE C DI ++LDEAD + D GF +++I
Sbjct: 118 ETLSKNLDILVATPGRLLEHIEKEAADCRDIECLILDEADRMLDMGFSTVVNQI 171
>gi|224370360|ref|YP_002604524.1| putative helicase of superfamily II [Desulfobacterium autotrophicum
HRM2]
gi|223693077|gb|ACN16360.1| putative helicase of superfamily II [Desulfobacterium autotrophicum
HRM2]
Length = 402
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 94/177 (53%), Gaps = 4/177 (2%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ GL+AE+++AV G P+ IQ IP VL G+ V+ + +G+G+T A+ LP+++
Sbjct: 2 SFEIFGLRAELLRAVAAEGYKEPTPIQDQAIPVVLRGEDVLAGAQTGTGKTAAFALPILE 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
ML + + PR +VL T E A Q + + L S++ GGV + D
Sbjct: 62 MLSKTSK----RTYTPRCLVLAPTRELAAQVQASFESLGRSLHLRSTVVFGGVGIQPQID 117
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +L+ATP +L H R + + +VLDEAD + D GF +I K+L L
Sbjct: 118 KLKKGVDILVATPGRLLDHAGRRTLDLSKVEILVLDEADRMLDMGFIHDIKKVLKLL 174
>gi|210631565|ref|ZP_03296936.1| hypothetical protein COLSTE_00821, partial [Collinsella stercoris
DSM 13279]
gi|210160006|gb|EEA90977.1| DEAD/DEAH box helicase, partial [Collinsella stercoris DSM 13279]
Length = 595
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/263 (28%), Positives = 125/263 (47%), Gaps = 26/263 (9%)
Query: 130 EKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGS 189
E S+GS A +F +LGL E++ AV MG P+ +Q IP L+G+ V+ ++ +G+
Sbjct: 28 EPSAGSAAGDGPTFADLGLSDEVLAAVADMGYTSPTPVQAASIPHALDGEDVLAAAQTGT 87
Query: 190 GRTLAYLLPLVQML---RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLD 246
G+T A+LLP + L R A + P +V+ T E A Q + + I+ C
Sbjct: 88 GKTAAFLLPTMNNLPHVPRGRARGRVAAQGPLMLVVTPTRELAQQIEDVCRAIAKCTGHT 147
Query: 247 SSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRG 306
S GGVS D +LIATP + I+ S D ++ +VLDEAD + D G
Sbjct: 148 SVTVVGGVSYNPQRDKLKRGCDILIATPGRLQDLIDQGACSLDQVQVLVLDEADRMLDMG 207
Query: 307 FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAGKVTAML 366
F P + +I+ +D QT+L +A + E G +T ++
Sbjct: 208 FLPAVRRIVGYTRDD--------RQTLLFSATLDEQA---------------VGSITDLV 244
Query: 367 LEMDQAEVFDLTESQDALKKKVV 389
+ + E+ +T + D +++ V+
Sbjct: 245 HDPARVEIAPVTSTADTVEQYVL 267
>gi|344257761|gb|EGW13865.1| ATP-dependent RNA helicase DDX54 [Cricetulus griseus]
Length = 861
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 114/230 (49%), Gaps = 20/230 (8%)
Query: 116 QPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAV 175
+P+ ++L ++++K SG FQ +GL + K + K G VP+ IQ IP +
Sbjct: 61 EPDTRELVRAQNKKKKKSGG-------FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVI 113
Query: 176 LNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHM 235
L+GK VV + +GSG+T +LLP+ + L+ A RA++L T E A Q
Sbjct: 114 LDGKDVVAMARTGSGKTACFLLPMFERLKARSA-----QTGARALILSPTRELALQTMKF 168
Query: 236 AKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 295
K + L +++ GG + + ++IATP ++ + N+ + YVV
Sbjct: 169 TKELGKFTGLKTALILGGDKMEDQFAALHENPDIIIATPGRLMHVAVEMNLKLQSVEYVV 228
Query: 296 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 345
DEAD LF+ GF ++ +I+ L G QT+L +A + ++L E
Sbjct: 229 FDEADRLFEMGFAEQLQEIIGRLPG--------GHQTVLFSATLPKLLVE 270
>gi|372281558|ref|ZP_09517594.1| ATP-dependent RNA helicase [Oceanicola sp. S124]
Length = 538
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 96/177 (54%), Gaps = 4/177 (2%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++ F +L L +++KA+ G P+ IQ IP L GK V+ + +G+G+T ++ LP+
Sbjct: 1 MTKFSDLDLDPKVLKAIADAGYESPTPIQAGAIPHALAGKDVLGIAQTGTGKTASFTLPM 60
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
+ L + A M PR++VLC T E A Q + +L ++ GGVS K
Sbjct: 61 ITRLAKGRARARM----PRSLVLCPTRELAAQVAENFDTYTKYMKLTKALLIGGVSFKEQ 116
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
E + + + +LIATP +L H E + ++ +V+DEAD + D GF P+I +I +
Sbjct: 117 EALIDRGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFS 173
>gi|449267073|gb|EMC78039.1| putative ATP-dependent RNA helicase DDX41, partial [Columba livia]
Length = 605
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 109/207 (52%), Gaps = 15/207 (7%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 174 IKSFKEMKFPAAILRGLKKKGIQQPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 233
Query: 200 VQMLRRDEALLPM-KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDS------SMENG 252
+ E LP K P +++C + E A Q + ++ + D ++ G
Sbjct: 234 IMFCMEQEKRLPFSKREGPYGLIICPSRELARQTHGIIEYYCRLLQEDGLPPLRCALCIG 293
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
G+S K + + M++ATP ++ ++ + VS D RY+ LDEAD + D GF +I
Sbjct: 294 GMSVKEQMETIKHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 353
Query: 313 KILNPLKDSALKSNGQGFQTILVTAAI 339
I + K GQ QT+L +A +
Sbjct: 354 TIFSYFK-------GQR-QTLLFSATM 372
>gi|302142729|emb|CBI19932.3| unnamed protein product [Vitis vinifera]
Length = 786
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 114/205 (55%), Gaps = 16/205 (7%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F+ LGL + +A+++ G VP+ IQ +P +L+G VV + +GSG+T A+L+P+++
Sbjct: 29 FESLGLSPNVYRAIKRKGYRVPTPIQRKTMPLILSGCDVVAMARTGSGKTAAFLIPMLER 88
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA-LED 261
L++ +P + RA++L T + A Q K ++ + S+ GG S ++ E+
Sbjct: 89 LKQH---VPQTGV--RALILSPTRDLALQTLKFTKELARYTDVRISLLVGGDSMESQFEE 143
Query: 262 VSNAPIGMLIATPSEVLQHI-EDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 320
++ P ++IATP ++ H+ E ++S + YVV DEAD LF GF ++ KIL L D
Sbjct: 144 LAQNP-DIIIATPGRLMHHLSEVDDMSLRTVEYVVFDEADCLFGMGFAEQLHKILAQLSD 202
Query: 321 SALKSNGQGFQTILVTAAIAEMLGE 345
+ QT+L +A + L E
Sbjct: 203 NR--------QTLLFSATLPSALAE 219
>gi|167585532|ref|ZP_02377920.1| DEAD/DEAH box helicase domain protein [Burkholderia ubonensis Bu]
Length = 408
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 94/177 (53%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL ++KAV ++G P+ IQ IPAVL G ++ + +G+G+T + LP++Q
Sbjct: 2 SFESLGLAEPLVKAVNELGYTSPTPIQSQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L A RA++L T E A Q + S +L S++ GGVS D
Sbjct: 62 RLHTFYAEHHHAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQID 121
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +++ATP +L H++ + + + +VLDEAD + D GF +I ++L L
Sbjct: 122 ALRRGVDIVVATPGRLLDHMQQKTIDLSQLDILVLDEADRMLDMGFIHDIKRVLAKL 178
>gi|42521033|ref|NP_966948.1| DEAD-box ATP dependent DNA helicase [Wolbachia endosymbiont of
Drosophila melanogaster]
gi|42410774|gb|AAS14882.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
endosymbiont of Drosophila melanogaster]
Length = 408
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 103/181 (56%), Gaps = 10/181 (5%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+++F E+GL A + +A++K LFVP+ IQ IP L GK ++ S+ +G+G+TLA+ +PL
Sbjct: 1 MNNFHEMGLPASLRQALDKNNLFVPTPIQIQAIPLALQGKDILGSAQTGTGKTLAFAIPL 60
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFH-MAKFISHCARLDSSMENGGVS-SK 257
V A L +P A+V+ T E A Q + + K +S + L ++ GG +
Sbjct: 61 V-------AKLLNEPNTGSALVIVPTRELAHQVTNEIRKLLSQNSALRVALLIGGEPIFR 113
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNP 317
L + P ++I TP ++ HIE + + ++ +VLDE D +FD GFG +I +I+
Sbjct: 114 QLNQLQKKP-QIVIGTPGRIIDHIERKTLITRNVSVLVLDETDRMFDMGFGVQIEEIMKH 172
Query: 318 L 318
L
Sbjct: 173 L 173
>gi|440684899|ref|YP_007159694.1| DEAD/DEAH box helicase domain protein [Anabaena cylindrica PCC
7122]
gi|428682018|gb|AFZ60784.1| DEAD/DEAH box helicase domain protein [Anabaena cylindrica PCC
7122]
Length = 450
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 109/217 (50%), Gaps = 20/217 (9%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL E+I+AV + G P+ IQ IPAVL+G ++ + +G+G+T ++ LPL+
Sbjct: 2 SFSNLGLSNEIIRAVTERGYTKPTPIQMQAIPAVLSGGDLLAGAQTGTGKTASFTLPLLH 61
Query: 202 MLRRDE-------ALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGV 254
L D+ LP+ RA++L T E A Q +L S++ GGV
Sbjct: 62 KLSSDQNVKSSAIGWLPI-----RALILTPTRELAAQVEESVHDYGKYLKLKSTVVFGGV 116
Query: 255 SSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
S + + + +L+ATP +L H++ V+ I +VLDEAD + D GF +I +I
Sbjct: 117 SINPQKRQLKSGVDILVATPGRLLDHLQQGTVNLSRIEILVLDEADRMLDMGFIRDIRRI 176
Query: 315 LNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLM 351
L+ L Q +L A ++ + E S L+
Sbjct: 177 LSILPKQR--------QNLLFFATFSDKIKELASGLL 205
>gi|167624931|ref|YP_001675225.1| DEAD/DEAH box helicase [Shewanella halifaxensis HAW-EB4]
gi|167354953|gb|ABZ77566.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
HAW-EB4]
Length = 436
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 127/237 (53%), Gaps = 20/237 (8%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F +LGL ++KAV + G P+ IQ IP +L+ ++++ ++ +G+G+T +++LP+++M
Sbjct: 3 FSKLGLSTPIVKAVTEQGYTSPTPIQAKTIPVILSQRNLIAAAQTGTGKTASFVLPILEM 62
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSSKALED 261
L R E + RA++L T E A Q +++++ H A L S GGV SK +
Sbjct: 63 LSRSET---QRKKRIRALILTPTRELAVQVEDNISQYGKHLA-LTSMAMYGGVDSKPQRE 118
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDS 321
+ +L+ATP +L R + D++ +VLDEAD + D GF +I+KI+ L
Sbjct: 119 RLIEGVDILVATPGRLLDMYTQRAIHFDELEILVLDEADRMLDMGFIEDINKIMEKLPVD 178
Query: 322 ALKSNGQGFQTILVTAAIAEMLGE-QLSSLMECLE------RDNAGKVTAMLLEMDQ 371
QT+L +A ++ + E ++++ +E DN K+ L+ +D+
Sbjct: 179 R--------QTLLFSATLSRQVKELARATIVRPIEISVTHNTDNKPKIEQWLVTVDK 227
>gi|167518760|ref|XP_001743720.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163777682|gb|EDQ91298.1| predicted protein [Monosiga brevicollis MX1]
Length = 787
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 108/205 (52%), Gaps = 15/205 (7%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ +FQ +GL + +A+ + G VP+ IQ IP ++ G+ VV + +GSG+T A+L+PL
Sbjct: 1 MGAFQAMGLSQAVARAINRKGYKVPTPIQRKTIPLLMAGQDVVAMARTGSGKTAAFLIPL 60
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA- 258
+ L+ A + + RA+VL T E A Q F K + + L S + GG S +
Sbjct: 61 FERLKNHSARVGI-----RALVLSPTRELALQTFKFVKELGRFSDLRSILILGGDSMDSQ 115
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
D+ P +++ATP L I + +S YVV DEAD LF+ GF ++ +I+ L
Sbjct: 116 FGDMHTNP-DIVVATPGRFLHLIVEMELSLVTTEYVVFDEADRLFEMGFAEQLREIMARL 174
Query: 319 KDSALKSNGQGFQTILVTAAIAEML 343
D+ QT L +A + ++L
Sbjct: 175 PDTR--------QTTLFSATLPKVL 191
>gi|357474503|ref|XP_003607536.1| hypothetical protein MTR_4g079320 [Medicago truncatula]
gi|355508591|gb|AES89733.1| hypothetical protein MTR_4g079320 [Medicago truncatula]
Length = 787
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 109/205 (53%), Gaps = 16/205 (7%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F+ LGL ++ +++ G VP+ IQ +P +L+G VV + +GSG+T A+L+P M
Sbjct: 20 FETLGLNRDVFSGIKRKGYKVPTPIQRKTMPLILSGIDVVAMARTGSGKTAAFLVP---M 76
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA-LED 261
L R +P + R ++L T + A Q K + H L S+ GG S ++ E+
Sbjct: 77 LHRLNQHVPQGGV--RGLILSPTRDLAQQTLKFTKELGHFTDLRVSLLVGGDSMESQFEE 134
Query: 262 VSNAPIGMLIATPSEVLQHI-EDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 320
++ P ++IATP ++ H+ E ++S + YVV DEAD LF GF ++ +IL L
Sbjct: 135 LAQNP-DIIIATPGRLMHHLSEVDDMSLRKVEYVVFDEADCLFGMGFAEQLHQILAQL-- 191
Query: 321 SALKSNGQGFQTILVTAAIAEMLGE 345
G+ QT+L +A + L E
Sbjct: 192 ------GENRQTLLFSATLPSALAE 210
>gi|354497513|ref|XP_003510864.1| PREDICTED: ATP-dependent RNA helicase DDX54 isoform 2 [Cricetulus
griseus]
Length = 875
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 114/230 (49%), Gaps = 20/230 (8%)
Query: 116 QPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAV 175
+P+ ++L ++++K SG FQ +GL + K + K G VP+ IQ IP +
Sbjct: 77 EPDTRELVRAQNKKKKKSGG-------FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVI 129
Query: 176 LNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHM 235
L+GK VV + +GSG+T +LLP+ + L+ A RA++L T E A Q
Sbjct: 130 LDGKDVVAMARTGSGKTACFLLPMFERLKARSA-----QTGARALILSPTRELALQTMKF 184
Query: 236 AKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 295
K + L +++ GG + + ++IATP ++ + N+ + YVV
Sbjct: 185 TKELGKFTGLKTALILGGDKMEDQFAALHENPDIIIATPGRLMHVAVEMNLKLQSVEYVV 244
Query: 296 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 345
DEAD LF+ GF ++ +I+ L G QT+L +A + ++L E
Sbjct: 245 FDEADRLFEMGFAEQLQEIIGRLPG--------GHQTVLFSATLPKLLVE 286
>gi|161523807|ref|YP_001578819.1| DEAD/DEAH box helicase [Burkholderia multivorans ATCC 17616]
gi|189351431|ref|YP_001947059.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
gi|160341236|gb|ABX14322.1| DEAD/DEAH box helicase domain protein [Burkholderia multivorans
ATCC 17616]
gi|189335453|dbj|BAG44523.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
Length = 480
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 94/177 (53%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL ++KAV ++G P+ IQ IPAVL G ++ + +G+G+T + LP++Q
Sbjct: 2 SFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L RA++L T E A Q + S +L S++ GGVS D
Sbjct: 62 RLHTFYTEHRSAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQID 121
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +++ATP +L H++ + + D+ +VLDEAD + D GF +I ++L L
Sbjct: 122 ALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKL 178
>gi|354497511|ref|XP_003510863.1| PREDICTED: ATP-dependent RNA helicase DDX54 isoform 1 [Cricetulus
griseus]
Length = 876
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 114/230 (49%), Gaps = 20/230 (8%)
Query: 116 QPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAV 175
+P+ ++L ++++K SG FQ +GL + K + K G VP+ IQ IP +
Sbjct: 77 EPDTRELVRAQNKKKKKSGG-------FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVI 129
Query: 176 LNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHM 235
L+GK VV + +GSG+T +LLP+ + L+ A RA++L T E A Q
Sbjct: 130 LDGKDVVAMARTGSGKTACFLLPMFERLKARSA-----QTGARALILSPTRELALQTMKF 184
Query: 236 AKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 295
K + L +++ GG + + ++IATP ++ + N+ + YVV
Sbjct: 185 TKELGKFTGLKTALILGGDKMEDQFAALHENPDIIIATPGRLMHVAVEMNLKLQSVEYVV 244
Query: 296 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 345
DEAD LF+ GF ++ +I+ L G QT+L +A + ++L E
Sbjct: 245 FDEADRLFEMGFAEQLQEIIGRLPG--------GHQTVLFSATLPKLLVE 286
>gi|261193383|ref|XP_002623097.1| ATP-dependent RNA helicase DBP10 [Ajellomyces dermatitidis
SLH14081]
gi|239588702|gb|EEQ71345.1| ATP-dependent RNA helicase DBP10 [Ajellomyces dermatitidis
SLH14081]
Length = 945
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 110/204 (53%), Gaps = 15/204 (7%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
FQ +GL A ++KA+ + G VP+ IQ IP +L+ + VV + +GSG+T A+++P+++
Sbjct: 88 FQSMGLNATLLKAITRKGFSVPTPIQRKTIPLLLDDQDVVGMARTGSGKTAAFVIPMIEK 147
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS-SKALED 261
L+ A RA++L + E A Q + K + L S + GG S + E
Sbjct: 148 LKNHSA-----KFGSRALILLPSRELALQTLKVVKELGRGTDLKSVLLVGGDSLEEQFEY 202
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDS 321
++ P ++IATP L + ++ IRYVV DEAD LF+ GF ++++IL+ L S
Sbjct: 203 MAGNP-DIIIATPGRFLHLKVEMSLDLSSIRYVVFDEADRLFEMGFAAQLTEILHGLPSS 261
Query: 322 ALKSNGQGFQTILVTAAIAEMLGE 345
QT+L +A + + L E
Sbjct: 262 R--------QTLLFSATLPKSLVE 277
>gi|71999644|ref|NP_741348.2| Protein Y94H6A.5, isoform a [Caenorhabditis elegans]
gi|351051383|emb|CCD74205.1| Protein Y94H6A.5, isoform a [Caenorhabditis elegans]
Length = 825
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 110/203 (54%), Gaps = 18/203 (8%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
+Q++GL + KA+EK G P+ IQ IP +++GK VV S +GSG+T A+++P++Q
Sbjct: 26 WQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMSRTGSGKTAAFVIPMLQK 85
Query: 203 L-RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS-SKALE 260
L RRD + RA+++ T E A Q F + K + L + GG +
Sbjct: 86 LKRRDTTGI-------RALMVSPTRELALQTFKVVKELGRFTGLRCACLVGGDQIEEQFS 138
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 320
+ P +L+ATP +L I + ++ ++YVV DEAD LF+ GF ++++ L + +
Sbjct: 139 TIHENP-DILLATPGRLLHVIVEMDLRLSYVQYVVFDEADRLFEMGFQDQLTETLKRIPE 197
Query: 321 SALKSNGQGFQTILVTAAIAEML 343
S QT+L +A + +ML
Sbjct: 198 SR--------QTLLFSATLPKML 212
>gi|37525462|ref|NP_928806.1| ATP-dependent RNA helicase RhlE [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36784890|emb|CAE13804.1| ATP-dependent RNA helicase RhlE [Photorhabdus luminescens subsp.
laumondii TTO1]
Length = 434
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 98/178 (55%), Gaps = 3/178 (1%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F+ LGL A++++AVE+ G P+ IQ IP VL GK ++ S+ +G+G+T + LP++Q
Sbjct: 8 NFKSLGLSADILRAVEEQGYSAPTPIQQQAIPVVLAGKDLLASAQTGTGKTAGFTLPMLQ 67
Query: 202 MLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE 260
L +++ + MK P RA++L T E A Q + S RL S + GGVS
Sbjct: 68 RL--NDSPIQMKGRRPVRALILTPTRELAAQVGENVRDYSKYLRLRSLVVFGGVSINPQM 125
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +L+ATP +L V + +VLDEAD + D GF +I ++LN L
Sbjct: 126 MKLRGGVDILVATPGRLLDLEHQNAVDLSRVEILVLDEADRMLDMGFIHDIRRVLNKL 183
>gi|261251481|ref|ZP_05944055.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|260938354|gb|EEX94342.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891 = ATCC
33934]
Length = 443
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 96/181 (53%), Gaps = 11/181 (6%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F++LGL ++K ++ +EIQ IP + GK ++ SS +GSG+TLA++LP++
Sbjct: 3 FKDLGLDNRLLKNLKHFDFKKATEIQQKAIPVAIAGKDLLASSKTGSGKTLAFVLPMLHK 62
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGF----HMAKFISHCARLDSSMENGGVSSKA 258
+++A PRA+VL T E A Q + M +S+ A L EN KA
Sbjct: 63 SLKNKAF---SAKDPRALVLAPTRELAKQVYGELRSMLGGLSYDATLIVGGENFNDQVKA 119
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
L ++ATP + H+E R++ D + +VLDEAD + D GF PE+ +I N
Sbjct: 120 LRKYPK----FIVATPGRLADHLEHRSLFLDGLETLVLDEADRMLDLGFAPELRRIHNAA 175
Query: 319 K 319
K
Sbjct: 176 K 176
>gi|352100041|ref|ZP_08957968.1| ATP-dependent RNA helicase RhlE [Halomonas sp. HAL1]
gi|350601389|gb|EHA17435.1| ATP-dependent RNA helicase RhlE [Halomonas sp. HAL1]
Length = 420
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/175 (36%), Positives = 98/175 (56%), Gaps = 5/175 (2%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF ELGL A++++AV G VP+ IQ IP VL G+ ++ S+ +G+G+T + LP++Q
Sbjct: 2 SFSELGLHADLLRAVTAQGYTVPTPIQREAIPVVLEGRDMLASAQTGTGKTAGFTLPMLQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSSKALE 260
L + P K RA+VL T E A Q G ++ + H A L S + GGV +
Sbjct: 62 RL--NTGKQPGK-RQVRALVLTPTRELAAQVGESVSTYGQHLA-LRSHIIFGGVGQQPQI 117
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
D A + +L+ATP +L + +V + +VLDEAD + D GF +I ++L
Sbjct: 118 DALKAGLDVLVATPGRLLDLHQQGHVDLSSVEILVLDEADRMLDMGFIHDIKRLL 172
>gi|332534743|ref|ZP_08410571.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas haloplanktis
ANT/505]
gi|332035830|gb|EGI72314.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas haloplanktis
ANT/505]
Length = 408
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 96/182 (52%), Gaps = 11/182 (6%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F E L +++ A+ KMG P+ IQ IP L G+ ++ S+ +G+G+T A+L+P +Q
Sbjct: 3 FSEFDLDNKLLDAINKMGYETPTSIQQQAIPEALQGRDILASAPTGTGKTAAFLIPAIQY 62
Query: 203 L----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
L RRD P R +V+ T E A Q + ++ L + GG++
Sbjct: 63 LLDFPRRD-------PGFARVLVMTPTRELAYQIHEQCELLAKRTHLKIGVVTGGINYGT 115
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+++ +LIATP +++++E N + + +++DEAD + D GF E+S+I +
Sbjct: 116 HKEIFEKNNDILIATPGRLMEYLETENFHAEHVEMLIIDEADRMLDMGFKKEMSRICDEA 175
Query: 319 KD 320
K+
Sbjct: 176 KN 177
>gi|320159208|ref|YP_004191586.1| ATP-dependent RNA helicase [Vibrio vulnificus MO6-24/O]
gi|319934520|gb|ADV89383.1| ATP-dependent RNA helicase [Vibrio vulnificus MO6-24/O]
Length = 398
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 96/177 (54%), Gaps = 3/177 (1%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF +LGL A + A++ +G P+ IQ IP +L G+ ++ ++ +G+G+T +++LP+++
Sbjct: 2 SFTQLGLCASLTDAIDTLGYPKPTRIQTQAIPVILEGRDLIAAAQTGTGKTASFVLPMLE 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
LR + K RA++L T E A Q K L S GGV KA +
Sbjct: 62 KLRHGQT---QKKKRTRALILVPTRELAIQVDEKIKQYGQNLALRSLAMFGGVDEKAQKQ 118
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +L+ATP +L R V ++I +VLDEAD + D GF +I+KIL+ L
Sbjct: 119 ALIEGLDILVATPGRLLDMYGQRAVYFEEIEMLVLDEADRMLDMGFIDDINKILDRL 175
>gi|156370098|ref|XP_001628309.1| predicted protein [Nematostella vectensis]
gi|156215282|gb|EDO36246.1| predicted protein [Nematostella vectensis]
Length = 585
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 117/211 (55%), Gaps = 10/211 (4%)
Query: 143 FQELGLKAEMIKAVEK-MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
F +L L + M+ +E +G+ + +Q IP +L G+ V + S +GSG+TL Y +P+VQ
Sbjct: 109 FSDLALSSHMVSNLENNVGVSKLTSVQKAAIPTLLAGEDVCIKSKTGSGKTLCYAIPVVQ 168
Query: 202 MLRRDEALLPM--KPMHPRAIVLCTTEESADQGFH-MAKFISHCARLDSSMENGGVSSKA 258
L + ++P + P A+VL T E A Q F+ + K + + + GG K+
Sbjct: 169 TL---QDIVPKIERADGPYAVVLVPTRELALQSFNLLLKLVKPFQWVVPGLVVGGEKRKS 225
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRN-VSCDDIRYVVLDEADTLFDRGFGPEISKILNP 317
+ I +L+ATP +L HIE ++ +++++VLDEAD L D GF ++S IL
Sbjct: 226 EKARLRKGINILVATPGRLLDHIEKTQCLTFRNVQWIVLDEADRLLDMGFEKDVSAILKA 285
Query: 318 LKDSALKSNGQGFQTILVTAAIAEMLGEQLS 348
+KD +K+ + Q +L++A + + + + +S
Sbjct: 286 IKDQQIKAMHR--QAVLLSATLTQGVKQLVS 314
>gi|343500285|ref|ZP_08738181.1| ATP-dependent RNA helicase [Vibrio tubiashii ATCC 19109]
gi|418480788|ref|ZP_13049843.1| ATP-dependent RNA helicase [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
gi|342820664|gb|EGU55482.1| ATP-dependent RNA helicase [Vibrio tubiashii ATCC 19109]
gi|384571548|gb|EIF02079.1| ATP-dependent RNA helicase [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
Length = 447
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 96/181 (53%), Gaps = 11/181 (6%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F++LGL ++K ++ +EIQ IP + GK ++ SS +GSG+TLA++LP++
Sbjct: 7 FKDLGLDNRLLKNLKHFDFKKATEIQQRAIPVAIAGKDLLASSKTGSGKTLAFVLPMLHK 66
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGF----HMAKFISHCARLDSSMENGGVSSKA 258
+++A PRA++L T E A Q + M +S+ A L EN KA
Sbjct: 67 SLKNKAF---SAKDPRAVILAPTRELAKQVYGELRSMLGGLSYDATLIVGGENFNDQVKA 123
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
L ++ATP + H+E R++ D + +VLDEAD + D GF PE+ +I N
Sbjct: 124 LRRYPK----FIVATPGRLADHLEHRSLFLDGLETLVLDEADRMLDLGFAPELRRIHNAA 179
Query: 319 K 319
K
Sbjct: 180 K 180
>gi|326514124|dbj|BAJ92212.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 654
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 93/170 (54%), Gaps = 4/170 (2%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+E+G E++ A+ G PS IQ + VL G+S +++ SGSG+TLAYL P+VQ
Sbjct: 254 SFKEIGCGDEILGALTTFGFPQPSHIQAMAYAPVLEGRSCIIADQSGSGKTLAYLCPIVQ 313
Query: 202 MLRRDEALLPMK--PMHPRAIVLCTTEESADQGFHMAKFISHCAR-LDSSMENGGVSSKA 258
LR++EA+ K P +PR ++L T E + Q + IS S + GG K
Sbjct: 314 NLRKEEAMGIHKPSPRNPRVVILTPTAELSSQVLQNCRSISKSGVPFRSMVATGGFRQKT 373
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF-DRGF 307
+ + + +LIATP L +++ V +++R V DE D LF + GF
Sbjct: 374 QLESLDQELDVLIATPGRFLYLLQEGFVQLNNLRCAVFDEVDILFSEEGF 423
>gi|410462897|ref|ZP_11316448.1| DNA/RNA helicase, superfamily II [Desulfovibrio magneticus str.
Maddingley MBC34]
gi|409983996|gb|EKO40334.1| DNA/RNA helicase, superfamily II [Desulfovibrio magneticus str.
Maddingley MBC34]
Length = 501
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 107/211 (50%), Gaps = 16/211 (7%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF L +I +++ G P+ IQ +P V+ G+ ++ + +G+G+T A+LLP++
Sbjct: 2 SFDSFCLHDSLIANIKRAGYETPTPIQAEAVPHVMEGRDLMGLAQTGTGKTAAFLLPILH 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L P + PR ++L T E A+Q F RL +++ GGV
Sbjct: 62 RL----LTTPARTRSPRTLILAPTRELAEQIFRSTLDFMRGTRLRATVIYGGVGMFPQVR 117
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDS 321
+ +++A P +L H+ NV D + +VLDEAD +FD GF P+I +IL +
Sbjct: 118 ALRQGVDVIVACPGRLLDHLNQGNVRFDGLETLVLDEADHMFDMGFLPDIKRIL-----A 172
Query: 322 ALKSNGQGFQTILVTA----AIAEMLGEQLS 348
AL + QT+L +A AI+ + GE L+
Sbjct: 173 ALPAK---RQTLLFSATMPPAISGLAGETLT 200
>gi|195024659|ref|XP_001985916.1| GH21077 [Drosophila grimshawi]
gi|193901916|gb|EDW00783.1| GH21077 [Drosophila grimshawi]
Length = 790
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 112/211 (53%), Gaps = 20/211 (9%)
Query: 138 EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLL 197
++++SF ++ L +++A+ +G P+ IQ IP L G+ + + +G+G+T AY+L
Sbjct: 155 DLITSFYQMNLSRPLMRAIGVLGYIYPTPIQASTIPIALLGRDICGCAATGTGKTAAYML 214
Query: 198 PLVQMLRRDEALLPMKPMHPRAI----VLCTTEESADQGFHMAKFISHCARLDSSMENGG 253
P V+ L +P++ +AI VL T E Q + + K + +D + GG
Sbjct: 215 PTVER-------LLYRPLNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTSIDVGLAIGG 267
Query: 254 VSSKALEDVSNAPIGMLIATPSEVLQHIEDR-NVSCDDIRYVVLDEADTLFDRGFGPEIS 312
+ KA E V ++IATP ++ HI++ + S D I ++LDEAD + D F ++
Sbjct: 268 LDVKAQEAVLRQNPDIVIATPGRLIDHIKNTPSFSLDSIEVLILDEADRMLDEYFAEQMK 327
Query: 313 KILNPLKDSALKSNGQGFQTILVTAAIAEML 343
+I+N S K+ QT+L +A ++E +
Sbjct: 328 EIIN----SCCKTR----QTMLFSATMSEQV 350
>gi|119896607|ref|YP_931820.1| putative ATP-dependent RNA helicase [Azoarcus sp. BH72]
gi|119669020|emb|CAL92933.1| putative ATP-dependent RNA helicase [Azoarcus sp. BH72]
Length = 447
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 108/218 (49%), Gaps = 16/218 (7%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F LGL E+I AVE+ G P+ +Q IPA + G +++SS +GSG+T A+ LP +
Sbjct: 2 TFHALGLAEELIAAVEQSGYTTPTPVQEQAIPAAIAGGDLLVSSHTGSGKTAAFTLPSLH 61
Query: 202 ML--RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR-LDSSMENGGVSSKA 258
L RR P PR +VL T E A Q K R L+++ GG A
Sbjct: 62 RLVGRR-----PAPNSGPRVLVLTPTRELAQQVEEAVKTYGRALRWLNTACLVGGAPFFA 116
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ P+ +++ATP +L H+ R + D+ +VLDEAD + D GF +I I+ +
Sbjct: 117 QVKQLSRPVDVVVATPGRLLDHLNRRKLKLSDVETLVLDEADRMLDMGFAEDIEAIVGAI 176
Query: 319 KDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLER 356
S QT+L +A + ++G + L +R
Sbjct: 177 PASR--------QTLLFSATLDGVVGALANKLTRNPQR 206
>gi|195011457|ref|XP_001983158.1| GH15746 [Drosophila grimshawi]
gi|193896640|gb|EDV95506.1| GH15746 [Drosophila grimshawi]
Length = 786
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 104/200 (52%), Gaps = 13/200 (6%)
Query: 146 LGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRR 205
+GL E++K + K G VP+ IQ IP +L G+ VV + +GSG+T +L+PL + L+R
Sbjct: 1 MGLGFELLKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEKLQR 60
Query: 206 DEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNA 265
E P K RA++L T E A Q + K + L + + GG S + +
Sbjct: 61 RE---PTKG--ARALILSPTRELAVQTYKFIKELGRFMELKTILVLGGDSMDSQFSAIHT 115
Query: 266 PIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKS 325
+++ATP L + ++ I YVV DEAD LF+ GFG ++++ LN L S
Sbjct: 116 CPDVIVATPGRFLHLCVEMDLKLTSIEYVVFDEADRLFEMGFGEQLNETLNRLPASR--- 172
Query: 326 NGQGFQTILVTAAIAEMLGE 345
Q ++ +A + ++L E
Sbjct: 173 -----QMVMFSATLPKLLVE 187
>gi|320353120|ref|YP_004194459.1| DEAD/DEAH box helicase [Desulfobulbus propionicus DSM 2032]
gi|320121622|gb|ADW17168.1| DEAD/DEAH box helicase domain protein [Desulfobulbus propionicus
DSM 2032]
Length = 428
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 92/177 (51%), Gaps = 6/177 (3%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF + + A+ G P+ IQ IP+VL + ++ + +G+G+T A++LP VQ
Sbjct: 2 SFTDFHFNEHITHAISHCGFTAPTPIQQQAIPSVLERRDLLGLAQTGTGKTAAFILPTVQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L R +A H RA+++ T E A+Q + I RL S GGVS +A
Sbjct: 62 HLMRTQA------HHVRALIIAPTRELAEQINDFTRAIIRNTRLKSIAVYGGVSKQAQIT 115
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +++A P +L + D+ V + ++LDEAD +FD+GF P+I +IL L
Sbjct: 116 KLRGGVDIVVACPGRLLDLLNDKAVDLSRVDTLILDEADHMFDKGFLPDIRRILRRL 172
>gi|85107031|ref|XP_962298.1| hypothetical protein NCU07712 [Neurospora crassa OR74A]
gi|74696531|sp|Q7S9J4.1|DBP10_NEUCR RecName: Full=ATP-dependent RNA helicase dbp-10
gi|28923900|gb|EAA33062.1| hypothetical protein NCU07712 [Neurospora crassa OR74A]
Length = 934
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 116/227 (51%), Gaps = 20/227 (8%)
Query: 119 QQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNG 178
Q++ SNI + K G FQ +GL A +++A+ + G VP+ IQ IP +L
Sbjct: 84 QRKSSNIQGKSVKKGGG-------FQAMGLNAHLLRAITRKGFSVPTPIQRKAIPLILER 136
Query: 179 KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 238
K VV + +GSG+T A+++P+++ L+ + RA+++ + E A Q + K
Sbjct: 137 KDVVGMARTGSGKTAAFVIPMIERLKGHSPRV-----GSRALIMSPSRELALQTLKVVKE 191
Query: 239 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 298
+ L + + GG S + + + ++IATP L + N+S I+YVV DE
Sbjct: 192 LGRGTDLKTVLLVGGDSLEEQFGMMASNPDIIIATPGRFLHLKVEMNLSLASIKYVVFDE 251
Query: 299 ADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 345
AD LF+ GF E+++IL+ L S QT+L +A + L E
Sbjct: 252 ADRLFEMGFATELTEILHALPPSR--------QTLLFSATLPSSLVE 290
>gi|359434625|ref|ZP_09224888.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas sp. BSi20652]
gi|357918834|dbj|GAA61137.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas sp. BSi20652]
Length = 454
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 96/182 (52%), Gaps = 11/182 (6%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F E L +++ A+ KMG P+ IQ IP L G+ ++ S+ +G+G+T A+L+P +Q
Sbjct: 3 FSEFDLDNKLLDAINKMGYETPTSIQQQAIPEALQGRDILASAPTGTGKTAAFLIPAIQY 62
Query: 203 L----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
L RRD P R +V+ T E A Q + ++ L + GG++
Sbjct: 63 LLDFPRRD-------PGFARVLVMTPTRELAYQIHEQCELLAKRTHLKIGVVTGGINYGT 115
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+++ +LIATP +++++E N + + +++DEAD + D GF E+S+I +
Sbjct: 116 HKEIFEKNNDILIATPGRLMEYLETENFHAEHVEMLIIDEADRMLDMGFKKEMSRICDEA 175
Query: 319 KD 320
K+
Sbjct: 176 KN 177
>gi|241662052|ref|YP_002980412.1| DEAD/DEAH box helicase [Ralstonia pickettii 12D]
gi|240864079|gb|ACS61740.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12D]
Length = 565
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 93/184 (50%), Gaps = 10/184 (5%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF ELGL ++++AV ++G P+ IQ IPA+L G ++ + +G+G+T + LPL
Sbjct: 2 SFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPL-- 59
Query: 202 MLRRDEALLPMKPMHP-------RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGV 254
L R A P K P RA+VL T E A Q + L S + GGV
Sbjct: 60 -LHRLSASQPNKVQTPQGMRFPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGV 118
Query: 255 SSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
D + +++ATP +L H+ R + I +VLDEAD + D GF +I KI
Sbjct: 119 GINPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKI 178
Query: 315 LNPL 318
LN L
Sbjct: 179 LNIL 182
>gi|324505328|gb|ADY42291.1| ATP-dependent RNA helicase DDX27 [Ascaris suum]
Length = 688
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 112/210 (53%), Gaps = 14/210 (6%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ + L M+KAV G P+ IQ IP L G+ + + +G+G+T A++LP+++
Sbjct: 146 SFEYMNLSRPMLKAVGACGFTKPTPIQAACIPLALAGRDLCACAATGTGKTAAFMLPILE 205
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L P + R +VL T E A Q FH+ + +S ++++ + GG+ KA E
Sbjct: 206 RL----LFKPKQKSVTRVLVLVPTRELAMQVFHVTRLLSQFSQVEICLCAGGLDIKAQEA 261
Query: 262 VSNAPIGMLIATPSEVLQHIEDR-NVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 320
++IATP ++ H+ + N S DI +VLDEAD + D F ++ +++
Sbjct: 262 ALRLGPDIVIATPGRLIDHLHNAPNFSLHDIEVLVLDEADRMLDEAFADQMKELIR---- 317
Query: 321 SALKSNGQGFQTILVTAAIAEMLGEQLSSL 350
L S + QT+L +A + + + EQL+++
Sbjct: 318 --LCSANR--QTLLFSATMTDQI-EQLAAV 342
>gi|421477647|ref|ZP_15925459.1| DEAD/DEAH box helicase, partial [Burkholderia multivorans CF2]
gi|400226180|gb|EJO56273.1| DEAD/DEAH box helicase, partial [Burkholderia multivorans CF2]
Length = 414
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 94/177 (53%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL ++KAV ++G P+ IQ IPAVL G ++ + +G+G+T + LP++Q
Sbjct: 2 SFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L RA++L T E A Q + S +L S++ GGVS D
Sbjct: 62 RLHTFYTEHRSAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQID 121
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +++ATP +L H++ + + D+ +VLDEAD + D GF +I ++L L
Sbjct: 122 ALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKL 178
>gi|326436974|gb|EGD82544.1| DEAD/DEAH box helicase [Salpingoeca sp. ATCC 50818]
Length = 857
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 104/189 (55%), Gaps = 4/189 (2%)
Query: 141 SSFQELGLKAEMIKAVE-KMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ F EL L + K + ++ L ++ Q + IP +L G+ V+L S +G+G+TLAY +P+
Sbjct: 15 TRFSELALAERLQKCIATRLKLEEMTKPQQLAIPLMLKGEDVMLRSATGTGKTLAYAVPI 74
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK-FISHCARLDSSMENGGVSSKA 258
+ L+ + + P A+VLC T E A Q F + K +S + + GG K+
Sbjct: 75 INDLQ-NLKFRVKRSDGPLAVVLCPTRELAKQSFEVIKQLLSSSVWIVPGLLTGGEKKKS 133
Query: 259 LEDVSNAPIGMLIATPSEVLQHIED-RNVSCDDIRYVVLDEADTLFDRGFGPEISKILNP 317
+ I +LIATP +L HIE +++ IR++VLDEAD L D GF ++KI+
Sbjct: 134 QKASIRKGINVLIATPGRLLDHIESTQSLQLKSIRWLVLDEADRLMDEGFEKSVTKIVKA 193
Query: 318 LKDSALKSN 326
+ D+ K+N
Sbjct: 194 MDDARSKTN 202
>gi|71999646|ref|NP_741347.2| Protein Y94H6A.5, isoform b [Caenorhabditis elegans]
gi|351051384|emb|CCD74206.1| Protein Y94H6A.5, isoform b [Caenorhabditis elegans]
Length = 871
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 120/233 (51%), Gaps = 28/233 (12%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
+Q++GL + KA+EK G P+ IQ IP +++GK VV S +GSG+T A+++P++Q
Sbjct: 26 WQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMSRTGSGKTAAFVIPMLQK 85
Query: 203 L-RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS-SKALE 260
L RRD + RA+++ T E A Q F + K + L + GG +
Sbjct: 86 LKRRDTTGI-------RALMVSPTRELALQTFKVVKELGRFTGLRCACLVGGDQIEEQFS 138
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 320
+ P +L+ATP +L I + ++ ++YVV DEAD LF+ GF ++++ L + +
Sbjct: 139 TIHENP-DILLATPGRLLHVIVEMDLRLSYVQYVVFDEADRLFEMGFQDQLTETLKRIPE 197
Query: 321 SALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAGKVTAMLLEMDQAE 373
S QT+L +A + +ML ++ AG ML+ +D E
Sbjct: 198 SR--------QTLLFSATLPKML----------VDFAKAGLTDPMLVRLDVDE 232
>gi|77359468|ref|YP_339043.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas haloplanktis
TAC125]
gi|76874379|emb|CAI85600.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis TAC125]
Length = 408
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 96/182 (52%), Gaps = 11/182 (6%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F E L +++ A+ KMG P+ IQ IP L G+ ++ S+ +G+G+T A+L+P +Q
Sbjct: 3 FSEFDLDNKLLDAINKMGYETPTSIQQQAIPEALQGRDILASAPTGTGKTAAFLIPAIQY 62
Query: 203 L----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
L RRD P R +V+ T E A Q + ++ L + GG++
Sbjct: 63 LLDFPRRD-------PGFARVLVMTPTRELAYQIHEQCELLAKRTNLKIGVVTGGINYGT 115
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+++ +LIATP +++++E N + + +++DEAD + D GF E+S+I +
Sbjct: 116 HKEIFEKNNDILIATPGRLMEYLETENFHAEHVEMLIIDEADRMLDMGFKKEMSRICDEA 175
Query: 319 KD 320
K+
Sbjct: 176 KN 177
>gi|345570653|gb|EGX53474.1| hypothetical protein AOL_s00006g340 [Arthrobotrys oligospora ATCC
24927]
Length = 946
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/231 (32%), Positives = 120/231 (51%), Gaps = 30/231 (12%)
Query: 120 QQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGK 179
++ SNI S+ K SG FQ +GL +++KA+++ G VP+ IQ IP +L G+
Sbjct: 88 RKASNIKSKSIKKSGG-------FQSMGLNLQLLKAIQRKGFSVPTPIQRKTIPLLLEGQ 140
Query: 180 SVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 239
VV + +GSG+T A+++P+++ L+ A + RA+V+ + E A Q + K I
Sbjct: 141 DVVGMARTGSGKTAAFVVPMIEKLKAHSA-----KVGARALVMSPSRELALQTLKVVKDI 195
Query: 240 SHCARLDSSMENGGVSSKALED-----VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYV 294
S L + + GG S LED +N I +IATP L + + ++YV
Sbjct: 196 SRGTDLKAILLVGGDS---LEDQFSMMTTNPDI--IIATPGRFLHLKVEMELDLSSMQYV 250
Query: 295 VLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 345
V DEAD LF+ GF ++ +IL+ L S QT L +A + + L E
Sbjct: 251 VFDEADRLFEMGFAAQLGEILHALPASR--------QTTLFSATLPKSLVE 293
>gi|336311678|ref|ZP_08566639.1| ATP-dependent RNA helicase [Shewanella sp. HN-41]
gi|335864792|gb|EGM69861.1| ATP-dependent RNA helicase [Shewanella sp. HN-41]
Length = 467
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 96/176 (54%), Gaps = 3/176 (1%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F LGL ++KA+ ++G P+ IQ IP +L+GK+V+ ++ +G+G+T +++LPL+QM
Sbjct: 3 FSTLGLSEPIVKAITELGYSTPTPIQAKAIPVILSGKNVLGAAQTGTGKTASFVLPLLQM 62
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDV 262
+ +P RAI+L T E A Q + + L S GGV + +
Sbjct: 63 FADSPKI---RPKRVRAIILTPTRELAVQVEENIRQYAKYLPLTSMAMYGGVDAAPQKKR 119
Query: 263 SNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +L+ATP +L R + D++ +VLDEAD + D GF +I+KI+ L
Sbjct: 120 LIEGVDILVATPGRLLDMYTQRAIHFDELSVLVLDEADRMLDMGFIEDINKIIEKL 175
>gi|157963311|ref|YP_001503345.1| DEAD/DEAH box helicase [Shewanella pealeana ATCC 700345]
gi|157848311|gb|ABV88810.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
700345]
Length = 511
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/174 (37%), Positives = 93/174 (53%), Gaps = 3/174 (1%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL A+++KAV G PS IQ IPAVL GK V+ ++ +G+G+T + LPL++
Sbjct: 2 SFASLGLSAQILKAVANKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLE 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
+L + P K + RA+VL T E A Q + L S++ GGV
Sbjct: 62 LLSKGTK-APAKQV--RALVLTPTRELAAQVGESVETYGKNLPLKSAVVFGGVGIGPQIT 118
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
N + +L+ATP +L R +S + +VLDEAD + D GF +I KIL
Sbjct: 119 KLNRGVDILVATPGRLLDLYNQRALSFSQLEVLVLDEADRMLDMGFIHDIKKIL 172
>gi|294637622|ref|ZP_06715901.1| putative ATP-dependent RNA helicase [Edwardsiella tarda ATCC 23685]
gi|451965942|ref|ZP_21919197.1| ATP-dependent RNA helicase SrmB [Edwardsiella tarda NBRC 105688]
gi|291089177|gb|EFE21738.1| putative ATP-dependent RNA helicase [Edwardsiella tarda ATCC 23685]
gi|451315191|dbj|GAC64559.1| ATP-dependent RNA helicase SrmB [Edwardsiella tarda NBRC 105688]
Length = 448
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 94/175 (53%), Gaps = 5/175 (2%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
++F EL L ++ A+ G P+ IQ IP ++G+ V+ S+ +G+G+T A+LLP +
Sbjct: 4 TNFSELELDERLLDALRDKGYERPTAIQIAAIPPAMDGRDVLGSAPTGTGKTAAFLLPAL 63
Query: 201 QMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
Q L P K P R ++L T E A Q A+ ++ LD + GGVS
Sbjct: 64 QHL----LDFPRKKSGPPRILILTPTRELAMQVADQARELARHTTLDITTITGGVSYINH 119
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
++ + M++ATP +LQ+I++ N C + ++LDEAD + D GF +I +
Sbjct: 120 AEIFSTNQDMVVATPGRLLQYIKEENFDCRSVETLILDEADRMLDMGFAKDIETV 174
>gi|242035801|ref|XP_002465295.1| hypothetical protein SORBIDRAFT_01g035760 [Sorghum bicolor]
gi|241919149|gb|EER92293.1| hypothetical protein SORBIDRAFT_01g035760 [Sorghum bicolor]
Length = 618
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 114/209 (54%), Gaps = 15/209 (7%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
F++L L M++ + + G+ P+ IQ G+P VL+G+ ++ + +GSG+TL ++LPL+
Sbjct: 174 DFRDLRLPEPMLRKLRERGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPLIM 233
Query: 202 MLRRDEALLPMKPMH-PRAIVLCTTEESADQGFH-MAKFI-----SHCARLDSSMENGGV 254
+ ++E L+P+ P P +++C + E A Q + + +F+ + + + GGV
Sbjct: 234 VAVQEEILMPIVPGEGPFGMIICPSRELAKQTYDVIEQFLIPLKEAGYPEIRPLLCIGGV 293
Query: 255 SSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+ DV + +++ATP + + + ++ D+ RY+ LDEAD L D GF +I ++
Sbjct: 294 DMRTQLDVLKKGVHIVVATPGRLKDLLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIKEV 353
Query: 315 LNPLKDSALKSNGQGFQTILVTAAIAEML 343
+ KD QT+L +A + + +
Sbjct: 354 FDHFKDQR--------QTLLFSATMPQKI 374
>gi|421472538|ref|ZP_15920727.1| DEAD/DEAH box helicase, partial [Burkholderia multivorans ATCC
BAA-247]
gi|400222909|gb|EJO53257.1| DEAD/DEAH box helicase, partial [Burkholderia multivorans ATCC
BAA-247]
Length = 407
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 94/177 (53%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL ++KAV ++G P+ IQ IPAVL G ++ + +G+G+T + LP++Q
Sbjct: 2 SFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L RA++L T E A Q + S +L S++ GGVS D
Sbjct: 62 RLHTFYTEHRSARRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQID 121
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +++ATP +L H++ + + D+ +VLDEAD + D GF +I ++L L
Sbjct: 122 ALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKL 178
>gi|340521482|gb|EGR51716.1| predicted protein [Trichoderma reesei QM6a]
Length = 914
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 112/220 (50%), Gaps = 15/220 (6%)
Query: 122 LSNIASEREKSS--GSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGK 179
L AS R+ S+ G + FQ +GL A ++KA+ + G VP+ IQ IP VL K
Sbjct: 66 LQQAASYRKASNLKGRTVKKGGGFQAMGLNANLLKAIARKGFSVPTPIQRKTIPLVLERK 125
Query: 180 SVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 239
VV + +GSG+T A+++P+++ LR + RA++L + E A Q + K +
Sbjct: 126 DVVGMARTGSGKTAAFVIPMIERLRAHSS-----KFGSRALILSPSRELAIQTLKVVKEL 180
Query: 240 SHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 299
L S + GG S + +A ++IATP L + + I+YVV DEA
Sbjct: 181 GRGTDLKSVLLVGGDSLEEQFGFMSANPDIVIATPGRFLHLKVEMGLDLSSIKYVVFDEA 240
Query: 300 DTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 339
D LF+ GF ++++IL+ L S QT+L +A +
Sbjct: 241 DRLFEMGFATQLTEILHALPPSR--------QTLLFSATL 272
>gi|224067501|ref|XP_002193843.1| PREDICTED: probable ATP-dependent RNA helicase DDX41 [Taeniopygia
guttata]
Length = 617
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 109/207 (52%), Gaps = 15/207 (7%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 175 IKSFKEMKFPAAILRGLKKKGIQQPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 234
Query: 200 VQMLRRDEALLPM-KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDS------SMENG 252
+ E LP K P +++C + E A Q + ++ + D ++ G
Sbjct: 235 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDGLPPLRCALCIG 294
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
G+S K + + M++ATP ++ ++ + VS D RY+ LDEAD + D GF +I
Sbjct: 295 GMSVKEQMETIKHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 354
Query: 313 KILNPLKDSALKSNGQGFQTILVTAAI 339
I + K GQ QT+L +A +
Sbjct: 355 TIFSYFK-------GQR-QTLLFSATM 373
>gi|170059153|ref|XP_001865238.1| ATP-dependent RNA helicase abstrakt [Culex quinquefasciatus]
gi|167878066|gb|EDS41449.1| ATP-dependent RNA helicase abstrakt [Culex quinquefasciatus]
Length = 619
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 74/270 (27%), Positives = 128/270 (47%), Gaps = 25/270 (9%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ +F+E+ ++ +EK + PS IQ GIPAVL G+ ++ + +GSG+TL ++LP+
Sbjct: 179 ICTFREMKFPKSILAGLEKRNIRKPSPIQVQGIPAVLAGRDLIGIAFTGSGKTLVFVLPI 238
Query: 200 VQMLRRDEALLP-MKPMHPRAIVLCTTEESADQGFHMAKFISHCARLD--------SSME 250
V E LP M P +++C + E A Q F + ++ +C L S++
Sbjct: 239 VMFSLEQEIRLPFMAKEGPYGLIICPSRELAKQTFDIVQY--YCQHLQQAGMPEIRSALA 296
Query: 251 NGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPE 310
GGV V +++ATP ++ ++ + V D RY+ +DEAD + D GF +
Sbjct: 297 IGGVPVNEALAVIQQGCHIMVATPGRLMDMLDKKLVKLDVCRYLCMDEADRMIDMGFEED 356
Query: 311 ISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAGKVTAMLLEMD 370
+ I + K GQ QT+L +A + + + S + N G+ A + +
Sbjct: 357 VRTIFSYFK-------GQR-QTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASMNVT 408
Query: 371 QAEVFDLTESQDALKKKVVEAMDSLHLSAP 400
Q + E+ KVV +D L + P
Sbjct: 409 QDVEYVKQEA------KVVYLLDCLQKTPP 432
>gi|336470872|gb|EGO59033.1| hypothetical protein NEUTE1DRAFT_60019 [Neurospora tetrasperma FGSC
2508]
gi|350291940|gb|EGZ73135.1| ATP-dependent RNA helicase dbp-10 [Neurospora tetrasperma FGSC
2509]
Length = 934
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 116/227 (51%), Gaps = 20/227 (8%)
Query: 119 QQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNG 178
Q++ SNI + K G FQ +GL A +++A+ + G VP+ IQ IP +L
Sbjct: 84 QRKSSNIQGKSVKKGGG-------FQAMGLNAHLLRAITRKGFSVPTPIQRKAIPLILER 136
Query: 179 KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 238
K VV + +GSG+T A+++P+++ L+ + RA+++ + E A Q + K
Sbjct: 137 KDVVGMARTGSGKTAAFVIPMIERLKGHSPRV-----GSRALIMSPSRELALQTLKVVKE 191
Query: 239 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 298
+ L + + GG S + + + ++IATP L + N+S I+YVV DE
Sbjct: 192 LGRGTDLKTVLLVGGDSLEEQFGMMASNPDIIIATPGRFLHLKVEMNLSLASIKYVVFDE 251
Query: 299 ADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 345
AD LF+ GF E+++IL+ L S QT+L +A + L E
Sbjct: 252 ADRLFEMGFATELTEILHALPPSR--------QTLLFSATLPSSLVE 290
>gi|220927762|ref|YP_002504671.1| DEAD/DEAH box helicase [Clostridium cellulolyticum H10]
gi|219998090|gb|ACL74691.1| DEAD/DEAH box helicase domain protein [Clostridium cellulolyticum
H10]
Length = 542
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 98/182 (53%), Gaps = 15/182 (8%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
++F ELG+ A ++KA++ MG P+E+Q IP +LN + +++ S +GSG+T + + ++
Sbjct: 3 NTFNELGISAPILKAIDDMGFKTPTEVQSKAIPHILNNEDLIVMSKTGSGKTAVFGVSIL 62
Query: 201 QMLRRDEALLPMKPMHPRAIVLCTTEESADQGFH----MAKFISHCARLDSSMENGGVSS 256
Q+ +EA P+ ++L E A Q + MAK++ H N + +
Sbjct: 63 QLTNPEEA-------GPQGLILTPARELAVQVDNDIRKMAKYLKHKTTAIYGQHNINLET 115
Query: 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ L N + ++ TP V HI +S +IR++VLDEAD + D GF ++ +I+
Sbjct: 116 QIL----NKGVSIVTGTPGRVFDHISHGTLSTKNIRFLVLDEADRMLDMGFLDQVVRIVK 171
Query: 317 PL 318
L
Sbjct: 172 TL 173
>gi|300705099|ref|YP_003746702.1| ATP-dependent RNA helicase hydrolase [Ralstonia solanacearum
CFBP2957]
gi|299072763|emb|CBJ44116.1| ATP-dependent RNA helicase hydrolase [Ralstonia solanacearum
CFBP2957]
Length = 547
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 95/181 (52%), Gaps = 4/181 (2%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF ELGL ++++AV ++G P+ IQ IPA+L G ++ + +G+G+T + LPL+
Sbjct: 2 SFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLLH 61
Query: 202 ML---RRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
L + ++ P +P RA+VL T E A Q + L S + GGV
Sbjct: 62 RLSAAQPNKVHTPHGMRYPVRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGIN 121
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNP 317
D + +++ATP +L H+ R + I +VLDEAD + D GF +I KILN
Sbjct: 122 PQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKILNI 181
Query: 318 L 318
L
Sbjct: 182 L 182
>gi|386313562|ref|YP_006009727.1| DEAD/DEAH box helicase [Shewanella putrefaciens 200]
gi|319426187|gb|ADV54261.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
Length = 467
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 99/177 (55%), Gaps = 5/177 (2%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F +LGL ++KA+ ++G P+ IQ IP +L+GK+V+ ++ +G+G+T +++LPL+QM
Sbjct: 3 FSKLGLSDPIVKAITELGYASPTPIQTKAIPVILSGKNVLGAAQTGTGKTASFVLPLLQM 62
Query: 203 LRRDEALLP-MKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
A P ++P RAI+L T E A Q + + L S GGV + +
Sbjct: 63 F----ADAPKIRPKRVRAIILTPTRELAVQVEENIRQYAKYLPLTSMAMYGGVDAAPQKK 118
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +L+ATP +L R + D++ +VLDEAD + D GF +I+KI+ L
Sbjct: 119 KLIEGVDILVATPGRLLDMYTQRAIHFDELSVLVLDEADRMLDMGFIEDINKIIEKL 175
>gi|421889295|ref|ZP_16320341.1| ATP-dependent RNA helicase hydrolase [Ralstonia solanacearum K60-1]
gi|378965361|emb|CCF97089.1| ATP-dependent RNA helicase hydrolase [Ralstonia solanacearum K60-1]
Length = 545
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 95/181 (52%), Gaps = 4/181 (2%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF ELGL ++++AV ++G P+ IQ IPA+L G ++ + +G+G+T + LPL+
Sbjct: 2 SFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLLH 61
Query: 202 ML---RRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
L + ++ P +P RA+VL T E A Q + L S + GGV
Sbjct: 62 RLSAAQPNKVHTPHGMRYPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGIN 121
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNP 317
D + +++ATP +L H+ R + I +VLDEAD + D GF +I KILN
Sbjct: 122 PQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKILNI 181
Query: 318 L 318
L
Sbjct: 182 L 182
>gi|327282682|ref|XP_003226071.1| PREDICTED: ATP-dependent RNA helicase DDX54-like [Anolis
carolinensis]
Length = 840
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 115/230 (50%), Gaps = 20/230 (8%)
Query: 116 QPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAV 175
+P+ Q++ ++++K SG FQ +GL + K V K G +P+ IQ IP +
Sbjct: 45 EPDTQEMVRAQNKKKKKSGG-------FQSMGLSYPVFKGVMKKGYKIPTPIQRKTIPVI 97
Query: 176 LNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHM 235
L+GK VV + +GSG+T +L+P+ + L+ A RA++L T E A Q
Sbjct: 98 LDGKDVVAMARTGSGKTACFLIPMFEKLKAHSA-----KTGARALILSPTRELALQTLKF 152
Query: 236 AKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 295
K + A L +++ GG + + ++IATP ++ + + + YVV
Sbjct: 153 TKELGRFAGLKTALILGGDKMEDQFAALHENPDIIIATPGRLMHVAVEMKLKLHSVEYVV 212
Query: 296 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 345
DEAD LF+ GF + +I++ L +S QT+L +A + ++L E
Sbjct: 213 FDEADRLFEMGFSEHLKEIISRLPESR--------QTVLFSATLPKVLVE 254
>gi|221200134|ref|ZP_03573177.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
CGD2M]
gi|221206713|ref|ZP_03579725.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
CGD2]
gi|221173368|gb|EEE05803.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
CGD2]
gi|221180373|gb|EEE12777.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
CGD2M]
Length = 480
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 94/177 (53%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL ++KAV ++G P+ IQ IPAVL G ++ + +G+G+T + LP++Q
Sbjct: 2 SFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L RA++L T E A Q + S +L S++ GGVS D
Sbjct: 62 RLHTFYTEHRSAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQID 121
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +++ATP +L H++ + + D+ +VLDEAD + D GF +I ++L L
Sbjct: 122 ALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKL 178
>gi|308187815|ref|YP_003931946.1| ATP-dependent RNA helicase [Pantoea vagans C9-1]
gi|308058325|gb|ADO10497.1| ATP-dependent RNA helicase [Pantoea vagans C9-1]
Length = 442
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 96/176 (54%), Gaps = 5/176 (2%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
V++F EL L +++A+++ G P+ IQ IP L G+ V+ S+ +G+G+T AYLLP
Sbjct: 3 VTTFSELELDESLLQALQEKGFTRPTVIQAAAIPPALEGRDVLGSAPTGTGKTAAYLLPA 62
Query: 200 VQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
+Q L P K P R +++ T E A Q A+ ++ LD + GGV+
Sbjct: 63 LQHL----LDFPRKKSGPPRILIVTPTRELAMQVADHARELAKHTHLDIATITGGVAYMN 118
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+V + +++AT +LQ+I++ N C + +VLDEAD + D GF +I I
Sbjct: 119 HAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLVLDEADRMLDMGFAQDIETI 174
>gi|452838537|gb|EME40477.1| hypothetical protein DOTSEDRAFT_90700 [Dothistroma septosporum
NZE10]
Length = 1010
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 107/194 (55%), Gaps = 17/194 (8%)
Query: 131 KSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSG 190
KS NA+ +FQ +GL ++KA+ + G VP+ IQ IP +L+G+ VV + +GSG
Sbjct: 171 KSENKNAKKAGAFQTMGLNTHLLKAITRKGFSVPTPIQRKTIPLILDGQDVVGMARTGSG 230
Query: 191 RTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSME 250
+T A+++P+++ L+ A + RAIVL + E A Q + K + L +++
Sbjct: 231 KTAAFVIPMIEKLKSHSA-----KVGARAIVLSPSRELALQTLKVVKEMGKGTDLRTTLL 285
Query: 251 NGGVSSKALED-----VSNAPIGMLIATPSEVLQHIE-DRNVSCDDIRYVVLDEADTLFD 304
GG S LED SN I +IATP +H++ + + ++YVV DEAD LF+
Sbjct: 286 VGGDS---LEDQFSSMASNPDI--IIATPGR-FEHLKVEMGLELSSVKYVVFDEADRLFE 339
Query: 305 RGFGPEISKILNPL 318
GF ++ +I+ L
Sbjct: 340 MGFAAQLHEIMYSL 353
>gi|410637923|ref|ZP_11348493.1| DEAD-box ATP-dependent RNA helicase cshA [Glaciecola lipolytica E3]
gi|410142609|dbj|GAC15698.1| DEAD-box ATP-dependent RNA helicase cshA [Glaciecola lipolytica E3]
Length = 404
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 74/246 (30%), Positives = 122/246 (49%), Gaps = 18/246 (7%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F+EL L ++ +AV +MG P+ IQ + IP + G+ ++ ++ +G+G+T A+LLP Q
Sbjct: 2 FEELELDEKLCQAVAEMGYSTPTSIQSLVIPPAMEGQDILANAPTGTGKTAAFLLPACQF 61
Query: 203 LRRDEALLPMKPMHP---RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
L L HP R ++L T E A Q + A I+ L + GG++
Sbjct: 62 L------LDFPRQHPGSCRILILTPTRELALQVYEQALQITKHTDLVCGVITGGINYGTD 115
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319
+ + +L+ATP + +HIE + C DI +VLDEAD + D GF S I+N +
Sbjct: 116 RETLEKNLDILVATPGRLFEHIEKESFDCRDIESLVLDEADRMLDMGF----SAIVNQIA 171
Query: 320 DSA-LKSNGQGFQTILVTAAIAEMLGEQLSS--LMEC--LERDNAGKVTAMLLEMDQAEV 374
A + F L A IA + L++ L+E +++A + + L D A
Sbjct: 172 AEARWRKQSMLFSATLEGAGIARFAKDLLTNPVLLEANPSRKEHAKILQWIHLADDPAHK 231
Query: 375 FDLTES 380
++L +S
Sbjct: 232 YNLLKS 237
>gi|333375756|ref|ZP_08467557.1| ATP-dependent RNA helicase RhlE [Kingella kingae ATCC 23330]
gi|332969729|gb|EGK08743.1| ATP-dependent RNA helicase RhlE [Kingella kingae ATCC 23330]
Length = 484
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 104/202 (51%), Gaps = 9/202 (4%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++ F +LGL E++ A+ + G P+ IQ IP L G ++ ++ +G+G+T A++LP
Sbjct: 29 MTQFSQLGLGQEIVSALSEQGYETPTPIQLAAIPKALAGHDLLAAAQTGTGKTAAFMLPS 88
Query: 200 VQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
++ L+R MHP R +VL T E ADQ K L ++ GGVS
Sbjct: 89 LERLKRYANASTSPAMHPMRMLVLTPTRELADQIDQNTKSYIKNLPLRHTVLFGGVSMDK 148
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
A +++AT +L H++ +N++ + + VVLDEAD + D GF EI +I+ L
Sbjct: 149 QTADLRAGCEIVVATVGRLLDHVKQKNINLNKVEIVVLDEADRMLDMGFVDEIRQIMRLL 208
Query: 319 KDSALKSNGQGFQTILVTAAIA 340
S QT+L +A A
Sbjct: 209 PKSR--------QTLLFSATFA 222
>gi|445495878|ref|ZP_21462922.1| ATP-dependent RNA helicase RhlE [Janthinobacterium sp. HH01]
gi|444792039|gb|ELX13586.1| ATP-dependent RNA helicase RhlE [Janthinobacterium sp. HH01]
Length = 463
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 94/181 (51%), Gaps = 4/181 (2%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL +++AV + G P+ IQ IPAVLNG ++ + +G+G+T + LP++
Sbjct: 2 SFSSLGLSDAIVRAVTETGYTTPTPIQQQAIPAVLNGGDLLAGAQTGTGKTAGFTLPILH 61
Query: 202 MLRRD---EALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
L D A+ P RA++L T E A Q + +L+S++ GGV
Sbjct: 62 RLSTDANGAAITSNTTARPIRALILTPTRELAAQVEESVRTYGKYTKLNSTVIFGGVGIN 121
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNP 317
+ +L+ATP +L H+E R V+ + ++LDEAD + D GF +I K+L
Sbjct: 122 PQIKQLKHGVDILVATPGRLLDHMEQRTVNLSKVEILILDEADRMLDMGFIRDIKKVLAA 181
Query: 318 L 318
L
Sbjct: 182 L 182
>gi|86144589|ref|ZP_01062921.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio sp.
MED222]
gi|85837488|gb|EAQ55600.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio sp.
MED222]
Length = 443
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 104/211 (49%), Gaps = 13/211 (6%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F++LGL ++K ++ +EIQ IP + GK ++ SS +GSG+TLA++LP++
Sbjct: 3 FKDLGLDNRLLKNLKHYDFKKATEIQSKAIPVAIAGKDLLASSKTGSGKTLAFVLPMIHK 62
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGF----HMAKFISHCARLDSSMENGGVSSKA 258
+ +A PR ++L T E A Q + M +S+ A L EN KA
Sbjct: 63 ALKTKAF---SAKDPRGVILAPTRELAKQVYGELRSMLGGLSYEATLILGGENFNDQVKA 119
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
L ++ATP + H+E R++ D + ++LDEAD + D GF PE+ +I N
Sbjct: 120 LRKYPR----FIVATPGRLADHLEHRSLFLDGVETLILDEADRMLDLGFAPELRRIANAA 175
Query: 319 KDSALKSNGQGFQTILVTAAIAEMLGEQLSS 349
K + F L A + ++ E L S
Sbjct: 176 KHR--RRQTLMFSATLDHAEVNDIANEMLDS 204
>gi|56477451|ref|YP_159040.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
gi|56313494|emb|CAI08139.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
Length = 463
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 107/205 (52%), Gaps = 14/205 (6%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP-LV 200
+FQELGL +++A+ G VP+ +Q IPA L G +++SS +GSG+T A+ LP L
Sbjct: 2 TFQELGLHEALLQAIATTGYTVPTSVQEQAIPAALAGADLMVSSHTGSGKTAAFTLPSLH 61
Query: 201 QMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR-LDSSMENGGVSSKAL 259
+++ R P PR +VL T E A Q K + R L+++ GG A
Sbjct: 62 RLIDRK----PAPGAGPRVLVLTPTRELAQQVEKAVKTYARNLRYLNTACLVGGAPFFAQ 117
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319
+ + P+ +++ATP ++ H+ R + DI +VLDEAD + D GF +I I+
Sbjct: 118 AKLLSRPVDVVVATPGRLIDHLNRRKLKLSDIEVLVLDEADRMLDMGFVEDIETIVAATP 177
Query: 320 DSALKSNGQGFQTILVTAAIAEMLG 344
S QT+L +A + ++G
Sbjct: 178 ASR--------QTLLFSATLDGVVG 194
>gi|406595785|ref|YP_006746915.1| ATP-dependent RNA helicase SrmB [Alteromonas macleodii ATCC 27126]
gi|407682750|ref|YP_006797924.1| ATP-dependent RNA helicase SrmB [Alteromonas macleodii str.
'English Channel 673']
gi|406373106|gb|AFS36361.1| ATP-dependent RNA helicase SrmB [Alteromonas macleodii ATCC 27126]
gi|407244361|gb|AFT73547.1| ATP-dependent RNA helicase SrmB [Alteromonas macleodii str.
'English Channel 673']
Length = 408
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 95/177 (53%), Gaps = 11/177 (6%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F+EL L + A MG P+ IQ + IP L+G+ ++ S+ +G+G+T A+LLP Q
Sbjct: 2 TFEELELDEALCHAAADMGFETPTSIQELVIPHALDGRDILASAPTGTGKTAAFLLPACQ 61
Query: 202 ML----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
L RR +P R ++L T E A Q + A I+ ++ + GG++
Sbjct: 62 FLLDYPRR-------QPGATRILILTPTRELALQVYEQALAITKHTQIVCGVITGGINYG 114
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
++ + + +L+ATP +L+HIE C DI ++LDEAD + D GF +++I
Sbjct: 115 TDKETLSKNLDILVATPGRLLEHIEKEAADCRDIECLILDEADRMLDMGFSTVVNQI 171
>gi|372276956|ref|ZP_09512992.1| ATP-dependent RNA helicase SrmB [Pantoea sp. SL1_M5]
gi|390435903|ref|ZP_10224441.1| ATP-dependent RNA helicase SrmB [Pantoea agglomerans IG1]
Length = 442
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 96/176 (54%), Gaps = 5/176 (2%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
V++F EL L +++A+++ G P+ IQ IP L G+ V+ S+ +G+G+T AYLLP
Sbjct: 3 VTTFSELELDESLLQALQEKGFTRPTVIQAAAIPPALEGRDVLGSAPTGTGKTAAYLLPA 62
Query: 200 VQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
+Q L P K P R +++ T E A Q A+ ++ LD + GGV+
Sbjct: 63 LQHL----LDFPRKKSGPPRILIVTPTRELAMQVADHARELAKHTHLDIATITGGVAYMN 118
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+V + +++AT +LQ+I++ N C + +VLDEAD + D GF +I I
Sbjct: 119 HAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLVLDEADRMLDMGFAQDIETI 174
>gi|411010727|ref|ZP_11387056.1| ATP-dependent RNA helicase RhlE [Aeromonas aquariorum AAK1]
Length = 415
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 96/176 (54%), Gaps = 2/176 (1%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++SF +L L + + + ++G P+ +Q IP +L G+ ++ + +G+G+T A++LPL
Sbjct: 3 IASFADLALSPRLQQTLTELGYVAPTPVQASAIPVILAGRDLMAGAQTGTGKTAAFVLPL 62
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
++ L + +P+ RA+VL T E A Q + L S++ GGVS A
Sbjct: 63 LEQLLQHPTSDAPRPI--RALVLVPTRELAVQVHESVTRYAKGTDLTSTLVYGGVSIAAQ 120
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
+ A + +LIATP +L H+ +S +R++V DEAD + D GF EI +L
Sbjct: 121 VEALKAGVDLLIATPGRLLDHLRQGALSLAALRHLVFDEADRMLDMGFMDEIKALL 176
>gi|407686654|ref|YP_006801827.1| ATP-dependent RNA helicase SrmB [Alteromonas macleodii str.
'Balearic Sea AD45']
gi|407290034|gb|AFT94346.1| ATP-dependent RNA helicase SrmB [Alteromonas macleodii str.
'Balearic Sea AD45']
Length = 408
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 95/177 (53%), Gaps = 11/177 (6%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F+EL L + A MG P+ IQ + IP L+G+ ++ S+ +G+G+T A+LLP Q
Sbjct: 2 TFEELELDEALCHAAADMGFETPTSIQELVIPHALDGRDILASAPTGTGKTAAFLLPACQ 61
Query: 202 ML----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
L RR +P R ++L T E A Q + A I+ ++ + GG++
Sbjct: 62 FLLDYPRR-------QPGATRILILTPTRELALQVYEQALAITKHTQIVCGVITGGINYG 114
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
++ + + +L+ATP +L+HIE C DI ++LDEAD + D GF +++I
Sbjct: 115 TDKETLSKNLDILVATPGRLLEHIEKEAADCRDIECLILDEADRMLDMGFSTVVNQI 171
>gi|163750030|ref|ZP_02157274.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
benthica KT99]
gi|161330304|gb|EDQ01285.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
benthica KT99]
Length = 436
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/247 (30%), Positives = 124/247 (50%), Gaps = 27/247 (10%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
F L L+ E+++ + +G P+ IQ IPA+L G+ ++ + +GSG+T A+ LP++
Sbjct: 12 GFSSLSLRPELLQVLTALGYSQPTPIQTQAIPAILAGQDIMAGAQTGSGKTAAFSLPILH 71
Query: 202 -----MLRRDE-----ALLPMKPMHP-----RAIVLCTTEESADQGFHMAKFISHC--AR 244
+LR DE + P P RA+VL T E A Q H F+ + +
Sbjct: 72 KLTEPLLRLDEKNQQESEAPSCSQVPAIRAIRALVLTPTRELALQ-VH-GSFVKYAKLTQ 129
Query: 245 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 304
L S++ GGVS A + A + +L+ATP +L H+ ++S ++ ++V DEAD + D
Sbjct: 130 LKSALVYGGVSIDAQAQILAAGVDILVATPGRLLDHLRRGSMSLSELEFLVFDEADRMLD 189
Query: 305 RGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAGKVTA 364
GF EI I+ L + QT+L +A E L SL+ +R G+ A
Sbjct: 190 MGFKDEIDAIVKQLPKTR--------QTLLFSATFDESLYGLSQSLLRDPKRIEVGERNA 241
Query: 365 MLLEMDQ 371
+E++Q
Sbjct: 242 AAVEIEQ 248
>gi|218675982|ref|YP_002394801.1| ATP-dependent RNA helicase, DEAD box family [Vibrio splendidus
LGP32]
gi|218324250|emb|CAV25533.1| ATP-dependent RNA helicase, DEAD box family [Vibrio splendidus
LGP32]
Length = 447
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 104/211 (49%), Gaps = 13/211 (6%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F++LGL ++K ++ +EIQ IP + GK ++ SS +GSG+TLA++LP++
Sbjct: 7 FKDLGLDNRLLKNLKHYDFKKATEIQSKAIPVAIAGKDLLASSKTGSGKTLAFVLPMIHK 66
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGF----HMAKFISHCARLDSSMENGGVSSKA 258
+ +A PR ++L T E A Q + M +S+ A L EN KA
Sbjct: 67 ALKTKAF---SAKDPRGVILAPTRELAKQVYGELRSMLGGLSYEATLILGGENFNDQVKA 123
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
L ++ATP + H+E R++ D + ++LDEAD + D GF PE+ +I N
Sbjct: 124 LRKYPR----FIVATPGRLADHLEHRSLFLDGVETLILDEADRMLDLGFAPELRRIANAA 179
Query: 319 KDSALKSNGQGFQTILVTAAIAEMLGEQLSS 349
K + F L A + ++ E L S
Sbjct: 180 KHR--RRQTLMFSATLDHAEVNDIANEMLDS 208
>gi|207742395|ref|YP_002258787.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609]
gi|206593785|emb|CAQ60712.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609]
Length = 545
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 95/181 (52%), Gaps = 4/181 (2%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF ELGL ++++AV ++G P+ IQ IPA+L G ++ + +G+G+T + LPL+
Sbjct: 2 SFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLLH 61
Query: 202 ML---RRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
L + ++ P +P RA+VL T E A Q + L S + GGV
Sbjct: 62 RLSAAQPNKVHTPHGMRYPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGIN 121
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNP 317
D + +++ATP +L H+ R + I +VLDEAD + D GF +I KILN
Sbjct: 122 PQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKILNI 181
Query: 318 L 318
L
Sbjct: 182 L 182
>gi|399910751|ref|ZP_10779065.1| ATP-dependent RNA helicase RhlE [Halomonas sp. KM-1]
Length = 439
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 97/177 (54%), Gaps = 5/177 (2%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F ELGL+AE++ AVE G P+ IQ IPAVL G ++ S+ +G+G+T + LP++Q
Sbjct: 4 FSELGLRAELLSAVEAQGYTTPTPIQLQAIPAVLKGGDLLASAQTGTGKTAGFTLPMLQR 63
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSSKALED 261
L + P K RA+VL T E A Q G ++ + H L S + GGV + D
Sbjct: 64 LA--DGPRPGK-RQVRALVLTPTRELAAQVGESVSDYGRHLT-LTSHVIFGGVGQQPQVD 119
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +L+ATP +L + ++V + +VLDEAD + D GF +I K+L L
Sbjct: 120 AIRPGLDVLVATPGRLLDLQQQKHVDLSRVEILVLDEADRMLDMGFIHDIKKVLRLL 176
>gi|253689449|ref|YP_003018639.1| DEAD/DEAH box helicase domain-containing protein [Pectobacterium
carotovorum subsp. carotovorum PC1]
gi|251756027|gb|ACT14103.1| DEAD/DEAH box helicase domain protein [Pectobacterium carotovorum
subsp. carotovorum PC1]
Length = 441
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 94/176 (53%), Gaps = 5/176 (2%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
V++F EL L ++ A+ MG P+ IQ IP + G+ V+ S+ +G+G+T AYLLP+
Sbjct: 3 VTNFSELDLDESLLDALRDMGYERPTAIQAEAIPPAMEGRDVLGSAPTGTGKTAAYLLPV 62
Query: 200 VQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
+Q L P K P R ++L T E A Q A+ + LD + GGV+
Sbjct: 63 LQHL----IDFPRKKSGPPRILILTPTRELAMQVADQARAFAAHTHLDVATITGGVAYMN 118
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+V + +++AT +LQ+I++ N C + ++LDEAD + D GF +I I
Sbjct: 119 HAEVFSENQDVVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHI 174
>gi|120599060|ref|YP_963634.1| DEAD/DEAH box helicase [Shewanella sp. W3-18-1]
gi|146292869|ref|YP_001183293.1| DEAD/DEAH box helicase [Shewanella putrefaciens CN-32]
gi|120559153|gb|ABM25080.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
gi|145564559|gb|ABP75494.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
CN-32]
Length = 467
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 99/177 (55%), Gaps = 5/177 (2%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F +LGL ++KA+ ++G P+ IQ IP +L+GK+V+ ++ +G+G+T +++LPL+QM
Sbjct: 3 FSKLGLSDPIVKAITELGYASPTPIQTKAIPVILSGKNVLGAAQTGTGKTASFVLPLLQM 62
Query: 203 LRRDEALLP-MKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
A P ++P RAI+L T E A Q + + L S GGV + +
Sbjct: 63 F----ADAPKIRPKRVRAIILTPTRELAVQVEENIRQYAKYLPLTSMAMYGGVDAAPQKK 118
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +L+ATP +L R + D++ +VLDEAD + D GF +I+KI+ L
Sbjct: 119 KLIEGVDILVATPGRLLDMYTQRAIHFDELSVLVLDEADRMLDMGFIEDINKIIEKL 175
>gi|451812388|ref|YP_007448842.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
galatii TCC219]
gi|451778290|gb|AGF49238.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
galatii TCC219]
Length = 444
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 105/181 (58%), Gaps = 3/181 (1%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++SF+ GL +++ ++++G P+ IQ IP +L+G + ++ +G+G+T A++LP+
Sbjct: 13 LNSFRSFGLDNSILRVLDEIGYIKPTLIQESAIPNILSGSDFIGAAQTGTGKTAAFVLPI 72
Query: 200 VQML--RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
+ L + ++ P + + R+++L T E ADQ + K S L S + GGV +
Sbjct: 73 INRLIPFANNSVSPARHL-LRSLILVPTRELADQVYECVKLYSKNTELRSLVLFGGVDLE 131
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNP 317
+ + + +LIATP ++ H+ +NVS ++ +VLDEAD + D GF P++ +I+
Sbjct: 132 QQKVLLHRGCEILIATPGRLIAHMSQKNVSLINVDILVLDEADRMLDMGFMPDVDRIVGM 191
Query: 318 L 318
L
Sbjct: 192 L 192
>gi|219888667|gb|ACL54708.1| unknown [Zea mays]
Length = 424
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 88/165 (53%), Gaps = 3/165 (1%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+E+G EM+ A+ PS IQ + +L G+S V++ SGSG+TLAYL P++Q
Sbjct: 249 SFKEIGCSDEMLGALRNFDFPRPSHIQAMAYGPILEGRSCVVADQSGSGKTLAYLCPIIQ 308
Query: 202 MLRRDE--ALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR-LDSSMENGGVSSKA 258
LR +E L P +PR IVL T E A Q + + IS S + GG K
Sbjct: 309 NLRNEEVQGLHKSSPRNPRVIVLTPTAELASQVLNNCRLISKSGVPFRSMVATGGFRQKT 368
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 303
+ + + ++IATP L +++ V ++R VVLDE D LF
Sbjct: 369 QLESLDQELDVIIATPGRFLYLLQEGFVQLANLRCVVLDEVDILF 413
>gi|350551951|ref|ZP_08921160.1| DEAD/DEAH box helicase domain protein [Thiorhodospira sibirica ATCC
700588]
gi|349795594|gb|EGZ49390.1| DEAD/DEAH box helicase domain protein [Thiorhodospira sibirica ATCC
700588]
Length = 445
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 104/204 (50%), Gaps = 12/204 (5%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL+ ++ A+E G P+ +Q IPA L G +++SS +GSG+T A+ LP +Q
Sbjct: 2 SFESLGLENALLSAIEATGYTTPTPVQIQAIPAALTGADLLVSSHTGSGKTAAFTLPCLQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR-LDSSMENGGVSSKALE 260
L A PR +VL T E A Q K R L+++ GG A
Sbjct: 62 RLIEQRA---QPGSGPRVLVLTPTRELAQQVEKAVKTYGRKLRWLNTACLVGGAPFIAQA 118
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 320
+ P+ +++ATP ++ H+ R + D++ ++LDEAD + D GF +I I
Sbjct: 119 KQLSRPVDVVVATPGRLIDHLNRRKLKLSDVQMLILDEADRMLDMGFAEDIETI------ 172
Query: 321 SALKSNGQGFQTILVTAAIAEMLG 344
+ + Q QT+L +A + ++G
Sbjct: 173 --VAATPQDRQTLLFSATLDGVVG 194
>gi|289208213|ref|YP_003460279.1| DEAD/DEAH box helicase [Thioalkalivibrio sp. K90mix]
gi|288943844|gb|ADC71543.1| DEAD/DEAH box helicase domain protein [Thioalkalivibrio sp. K90mix]
Length = 441
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 93/178 (52%), Gaps = 3/178 (1%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
VSSF +LGL +++A+++ G P+ IQ IP VL G ++ ++ +G+G+T + LP+
Sbjct: 4 VSSFADLGLAESLLRALDQAGYKTPTPIQAQAIPEVLKGGDLLAAAQTGTGKTAGFTLPI 63
Query: 200 VQMLRRDEALLP-MKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
+Q L + P KP PRA++L T E A Q + L S GGV+
Sbjct: 64 LQRLTTGQT--PERKPGRPRALILTPTRELAAQVHDSVRTYGRHLSLKSMTIFGGVNMNP 121
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
P+ +++ATP +L H + + + +VLDEAD + D GF +I +++
Sbjct: 122 QIKALRGPMDIVVATPGRLLDHAGQKTIDLSGVEILVLDEADRMLDMGFIRDIRRLIG 179
>gi|417405072|gb|JAA49261.1| Putative atp-dependent rna helicase [Desmodus rotundus]
Length = 876
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 119/234 (50%), Gaps = 28/234 (11%)
Query: 116 QPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAV 175
+P+ +++ ++++K SG FQ +GL + K + K G VP+ IQ IP +
Sbjct: 78 EPDTREMVRAQNKKKKKSGG-------FQSMGLSYTVFKGIMKKGYKVPTPIQRKTIPVI 130
Query: 176 LNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHM 235
L+G+ VV + +GSG+T +L+P+ + L+ A RA++L T E A Q
Sbjct: 131 LDGRDVVAMARTGSGKTACFLIPMFERLKARSA-----QTGARALILSPTRELALQTMKF 185
Query: 236 AKFISHCARLDSSMENGGVSSKALEDVSNA----PIGMLIATPSEVLQHIEDRNVSCDDI 291
K + L +++ GG +ED +A P ++IATP ++ + N+ +
Sbjct: 186 TKELGKFTGLKTALILGG---DKMEDQFSALHENP-DVIIATPGRLMHVAVEMNLKLQSV 241
Query: 292 RYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 345
YVV DEAD LF+ GF ++ +I++ L G QT+L +A + +ML E
Sbjct: 242 EYVVFDEADRLFEMGFAEQLQEIISRLPG--------GHQTVLFSATLPKMLVE 287
>gi|421081934|ref|ZP_15542834.1| ATP-dependent RNA helicase SrmB [Pectobacterium wasabiae CFBP 3304]
gi|401703334|gb|EJS93557.1| ATP-dependent RNA helicase SrmB [Pectobacterium wasabiae CFBP 3304]
Length = 441
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 94/176 (53%), Gaps = 5/176 (2%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
V++F EL L ++ A+ MG P+ IQ IP + G+ V+ S+ +G+G+T AYLLP+
Sbjct: 3 VTNFSELDLDESLLDALRDMGYERPTAIQAEAIPPAMEGRDVLGSAPTGTGKTAAYLLPV 62
Query: 200 VQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
+Q L P K P R ++L T E A Q A+ + LD + GGV+
Sbjct: 63 LQHL----IDFPRKKSGPPRILILTPTRELAMQVADQARAFAAHTHLDIATITGGVAYMN 118
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+V + +++AT +LQ+I++ N C + ++LDEAD + D GF +I I
Sbjct: 119 HAEVFSENQDVVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHI 174
>gi|78067467|ref|YP_370236.1| DEAD/DEAH box helicase [Burkholderia sp. 383]
gi|77968212|gb|ABB09592.1| DEAD/DEAH box helicase [Burkholderia sp. 383]
Length = 484
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 95/177 (53%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL ++KAV ++G P+ IQ IPAVL G ++ + +G+G+T + LP++Q
Sbjct: 2 SFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L A RA++L T E A Q + S +L S++ GGVS D
Sbjct: 62 RLHTFYADNRGAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQID 121
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +++ATP +L H++ + + ++ +VLDEAD + D GF +I ++L L
Sbjct: 122 ALKRGVDIVVATPGRLLDHMQQKTIDLSNLDILVLDEADRMLDMGFIHDIKRVLAKL 178
>gi|309779776|ref|ZP_07674531.1| ATP-dependent RNA helicase RhlE, partial [Ralstonia sp. 5_7_47FAA]
gi|308921353|gb|EFP66995.1| ATP-dependent RNA helicase RhlE [Ralstonia sp. 5_7_47FAA]
Length = 404
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 93/184 (50%), Gaps = 10/184 (5%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF ELGL ++++AV ++G P+ IQ IPA+L G ++ + +G+G+T + LPL
Sbjct: 13 SFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILRGGDLLAGAQTGTGKTAGFTLPL-- 70
Query: 202 MLRRDEALLPMKPMHP-------RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGV 254
L R A P K P RA+VL T E A Q + L S + GGV
Sbjct: 71 -LHRLSAAQPNKVQTPQGMRFPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGV 129
Query: 255 SSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
D + +++ATP +L H+ R + I +VLDEAD + D GF +I KI
Sbjct: 130 GINPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKI 189
Query: 315 LNPL 318
LN L
Sbjct: 190 LNIL 193
>gi|451936623|ref|YP_007460477.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
oncopeltii TCC290E]
gi|451777546|gb|AGF48521.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
oncopeltii TCC290E]
Length = 447
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 103/181 (56%), Gaps = 3/181 (1%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++SF GL ++ + ++G P+ IQ IP +L G + ++ +G+G+T A++LP+
Sbjct: 13 LNSFSSFGLDDSILSVLNEIGYIKPTLIQESAIPNILEGFDFIGAAQTGTGKTAAFILPI 72
Query: 200 VQML--RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
+ L + ++ P + + R+++L T E ADQ + K S +L S + GGV +
Sbjct: 73 INKLIPFANNSVSPARHL-LRSLILVPTRELADQVYECIKLYSKNTKLRSLVLFGGVDLE 131
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNP 317
+D+ + +L+ATP ++ HI +N+S ++ +VLDEAD + D GF P++ +I+
Sbjct: 132 QQKDLLHKGCEILVATPGRLIAHINQKNISLINVDTLVLDEADRMLDMGFIPDVDRIVGM 191
Query: 318 L 318
L
Sbjct: 192 L 192
>gi|442750425|gb|JAA67372.1| Putative atp-dependent rna helicase [Ixodes ricinus]
Length = 767
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 106/202 (52%), Gaps = 15/202 (7%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
FQ +GL ++K V K G +P+ IQ IP +L G+ +V + +GSG+T A+L+P++
Sbjct: 16 FQSMGLSPPILKGVLKRGYQIPTPIQRKTIPVILEGRDMVAMARTGSGKTAAFLVPILDK 75
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS-SKALED 261
L+ RA+VL T E A Q AK + L S++ GG + E
Sbjct: 76 LKARSL-----QAGARALVLSPTRELALQTHKFAKELGKFTDLKSTVILGGDNMEDQFEA 130
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDS 321
+ P +LIATP L + + ++ I+YVV DEAD LF+ GF ++++IL+ L ++
Sbjct: 131 IHENP-DVLIATPGRFLHIVMEMDLKLSSIKYVVFDEADRLFEMGFQEQLNEILHRLPEN 189
Query: 322 ALKSNGQGFQTILVTAAIAEML 343
QT+L +A + ML
Sbjct: 190 R--------QTLLFSATLPRML 203
>gi|404491935|ref|YP_006716041.1| ATP-dependent RNA helicase RhlE [Pelobacter carbinolicus DSM 2380]
gi|77544066|gb|ABA87628.1| ATP-dependent RNA helicase RhlE [Pelobacter carbinolicus DSM 2380]
Length = 435
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 92/172 (53%), Gaps = 3/172 (1%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F EL L ++KA+ G VP+ IQ +P L G+ ++ S+G+G+G+T A++LP +Q
Sbjct: 3 FSELKLDPRILKALTDCGYHVPTPIQAQAVPEALAGRDLIASAGTGTGKTAAFMLPALQR 62
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDV 262
L + + PR +VL T E A Q A+ L +++ GGV +
Sbjct: 63 L---TVKIARRKGAPRMLVLAPTRELAGQVMDAARVYGKYLGLTTAVLLGGVPYRDQFRA 119
Query: 263 SNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
P+ +++ATP +L H++ R++ + +VLDEAD + D GF ++ K+
Sbjct: 120 LAKPLDLVVATPGRLLDHLQRRSIDLSCLEMLVLDEADRMLDMGFKEDVDKV 171
>gi|91792542|ref|YP_562193.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
OS217]
gi|91714544|gb|ABE54470.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
OS217]
Length = 465
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 100/175 (57%), Gaps = 3/175 (1%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF +LGL ++ A+ K L ++IQ + IPA L GK V+ + +GSG+TLA+ L +++
Sbjct: 31 SFSQLGLTKALVTALPK-ALVSATDIQRLAIPAGLKGKDVLALAQTGSGKTLAFGLVILE 89
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS-SKALE 260
L + P A+V+ T E A Q H ++ L S++ GG K ++
Sbjct: 90 KLLLQAKEKSVAQDKPSALVIVPTRELAQQVHHELNTVAMKLNLTSAIVCGGADLDKQID 149
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
++ P +LIATP +L ++++ VS DI+++VLDEAD L + GF P+I KI+
Sbjct: 150 ALAQGP-QLLIATPGRLLALVQEKAVSLSDIKHLVLDEADRLLEMGFWPDIQKII 203
>gi|225025644|ref|ZP_03714836.1| hypothetical protein EIKCOROL_02546 [Eikenella corrodens ATCC
23834]
gi|224941594|gb|EEG22803.1| hypothetical protein EIKCOROL_02546 [Eikenella corrodens ATCC
23834]
Length = 466
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 95/178 (53%), Gaps = 3/178 (1%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F LGL AE+ A+ G P+ IQ IP VL G ++ ++ +G+G+T A++LP ++
Sbjct: 5 FTNLGLSAEITAALADQGYEQPTAIQTAAIPKVLAGHDLLAAAQTGTGKTAAFMLPSLER 64
Query: 203 LRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSSKALE 260
LRR MHP R +VL T E ADQ + A +I + + + G K
Sbjct: 65 LRRYATTSTSPAMHPVRMLVLTPTRELADQIDQNTAAYIKNLPLRHTVLFGGMNMDKQTA 124
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
D+ A +++AT +L H++ +N+ D + VVLDEAD + D GF +I +I+ L
Sbjct: 125 DL-RAGCEIVVATVGRLLDHVQQKNIRLDKVEIVVLDEADRMLDMGFIDDIRRIMQLL 181
>gi|240994916|ref|XP_002404560.1| DEAD box protein abstrakt, putative [Ixodes scapularis]
gi|215491582|gb|EEC01223.1| DEAD box protein abstrakt, putative [Ixodes scapularis]
Length = 568
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/268 (26%), Positives = 134/268 (50%), Gaps = 21/268 (7%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+++F+E+ ++ ++ + G+ P+ IQ G+PAVL+G+ ++ + +GSG+TL ++LPL
Sbjct: 126 ITTFKEMKFPRTILASLRRKGITQPTPIQMQGLPAVLSGRDMIGIAFTGSGKTLVFVLPL 185
Query: 200 VQMLRRDEALLP-MKPMHPRAIVLCTTEESADQGFHMAKFISHCAR------LDSSMENG 252
+ E LP ++ P +V+C + E A Q F + F L + G
Sbjct: 186 LMFCLEQEKRLPFVQNEGPYGLVVCPSRELAKQTFEIVSFFVRALEEAGYPSLRGCLCIG 245
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
G S + ++ + +++ATP ++ ++ + V+ D RY+ LDEAD + D GF ++
Sbjct: 246 GTSVREQLEIVRRGVHVMVATPGRLMDMLDKKMVNLDMCRYLCLDEADRMIDMGFEEDVR 305
Query: 313 KILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAGKVTAMLLEMDQA 372
I + K GQ QT+L +A + + + S + N G+ A L++ Q
Sbjct: 306 TIFSFFK-------GQR-QTLLFSATMPKKIQNFARSALVKPITVNVGRAGAASLDVVQE 357
Query: 373 EVFDLTESQDALKKKVVEAMDSLHLSAP 400
+ E+ K+V +++L +AP
Sbjct: 358 VEYVKQEA------KIVHLLETLQKTAP 379
>gi|402565565|ref|YP_006614910.1| DEAD/DEAH box helicase [Burkholderia cepacia GG4]
gi|402246762|gb|AFQ47216.1| DEAD/DEAH box helicase domain protein [Burkholderia cepacia GG4]
Length = 489
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 95/177 (53%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL ++KAV ++G P+ IQ IPAVL G ++ + +G+G+T + LP++Q
Sbjct: 2 SFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L A RA++L T E A Q + S +L S++ GGVS D
Sbjct: 62 RLHTFYAEHRGAKRAIRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQID 121
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +++ATP +L H++ + + ++ +VLDEAD + D GF +I ++L L
Sbjct: 122 ALKRGVDIVVATPGRLLDHMQQKTIDLSNLDILVLDEADRMLDMGFIHDIKRVLAKL 178
>gi|329769092|ref|ZP_08260513.1| hypothetical protein HMPREF0433_00277 [Gemella sanguinis M325]
gi|328839438|gb|EGF89015.1| hypothetical protein HMPREF0433_00277 [Gemella sanguinis M325]
Length = 486
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 116/214 (54%), Gaps = 18/214 (8%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+++F+ELG+ E+++++ KM P+ IQ IP V +G ++ + +GSG+T A+ +P+
Sbjct: 1 MTTFEELGVSREVVESLSKMNFQSPTGIQTETIPYVFSGIDILAQAQTGSGKTGAFGIPI 60
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS-SKA 258
V +++R E L +++VL T E A Q + ++ L S+ GG S +
Sbjct: 61 VDIVKRSEDL--------QSLVLAPTRELAQQVGEQLRLMARAKGLKVSIIFGGTSIERQ 112
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
++D+ P +++ TP V+ HI R + D + ++VLDEAD + + GF ++ IL
Sbjct: 113 IQDLKKRP-QIVVGTPGRVIDHINRRTLKLDKLTHLVLDEADEMLNMGFIEDVRFIL--- 168
Query: 319 KDSALKSNGQGFQTILVTAAIAEMLGEQLSSLME 352
S + SN QT+L +A + + + E M+
Sbjct: 169 --SKITSN---HQTLLFSATMPKTIMELSKDFMK 197
>gi|195429198|ref|XP_002062651.1| GK17652 [Drosophila willistoni]
gi|194158736|gb|EDW73637.1| GK17652 [Drosophila willistoni]
Length = 782
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 104/198 (52%), Gaps = 13/198 (6%)
Query: 146 LGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRR 205
+GL +++K + K G VP+ IQ IP +L G+ VV + +GSG+T +L+PL + L+R
Sbjct: 1 MGLNQDLVKGITKRGYKVPTPIQRKTIPMILEGRDVVAMAKTGSGKTACFLIPLFERLQR 60
Query: 206 DEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNA 265
E P K RA++L T E A Q + K + L + + GG S + +
Sbjct: 61 RE---PTKG--ARALILSPTRELAVQTYKFIKELGRFMELKTILVLGGDSMDSQFSAIHT 115
Query: 266 PIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKS 325
+++ATP L + ++ + I YVV DEAD LF+ GFG ++++ L+ L S
Sbjct: 116 CPDVIVATPGRFLHLCVEMDLKLNSIEYVVFDEADRLFEMGFGEQLNETLHRLPSSR--- 172
Query: 326 NGQGFQTILVTAAIAEML 343
Q ++ +A + ++L
Sbjct: 173 -----QMVMFSATLPKLL 185
>gi|383858565|ref|XP_003704771.1| PREDICTED: ATP-dependent RNA helicase abstrakt-like [Megachile
rotundata]
Length = 625
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 109/207 (52%), Gaps = 15/207 (7%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ ++ +E+ G+ P+ IQ GIP VL+G+ ++ + +GSG+TL ++LP+
Sbjct: 183 LKSFKEMKFHRGILNGLEQKGIIKPTPIQVQGIPTVLSGRDMIGIAFTGSGKTLVFVLPI 242
Query: 200 VQMLRRDEALLP-MKPMHPRAIVLCTTEESADQGFHMAKFISH------CARLDSSMENG 252
+ E +P ++ P +++C + E A Q + + + ++ C + S + G
Sbjct: 243 IMFCLEQEVAMPFVRNEGPYGLIICPSRELAKQTYDIIRHYTNSLRQAGCPEIRSCLAIG 302
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
GV +V N + +++ATP ++ ++ + V RY+ +DEAD + D GF ++
Sbjct: 303 GVPVSESLEVINKGVHIMVATPGRLMDMLDKKMVKLSVCRYLCMDEADRMIDMGFEEDVR 362
Query: 313 KILNPLKDSALKSNGQGFQTILVTAAI 339
I + + GQ QT+L +A +
Sbjct: 363 TIFSFFR-------GQR-QTLLFSATM 381
>gi|27367363|ref|NP_762890.1| ATP-dependent RNA helicase [Vibrio vulnificus CMCP6]
gi|27358932|gb|AAO07880.1| ATP-dependent RNA helicase [Vibrio vulnificus CMCP6]
Length = 398
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 96/177 (54%), Gaps = 3/177 (1%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF +LGL A + A++ +G P+ IQ IP +L G+ ++ ++ +G+G+T +++LP+++
Sbjct: 2 SFTQLGLCASLTDAIDTLGYPKPTRIQTQAIPVILEGRDLIAAAQTGTGKTASFVLPMLE 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
LR + K RA++L T E A Q K L S GGV KA +
Sbjct: 62 KLRHGQT---QKKKRIRALILVPTRELAIQVDEKIKQYGQNLALRSLAMFGGVDEKAQKQ 118
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +L+ATP +L R V ++I +VLDEAD + D GF +I+KIL+ L
Sbjct: 119 ALIEGLDILVATPGRLLDMYGQRAVYFEEIEMLVLDEADRMLDMGFIDDINKILDRL 175
>gi|304398629|ref|ZP_07380501.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB]
gi|440757280|ref|ZP_20936468.1| ATP-dependent RNA helicase SrmB [Pantoea agglomerans 299R]
gi|304353840|gb|EFM18215.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB]
gi|436428839|gb|ELP26488.1| ATP-dependent RNA helicase SrmB [Pantoea agglomerans 299R]
Length = 442
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 96/176 (54%), Gaps = 5/176 (2%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
V++F EL L +++A+++ G P+ IQ IP L G+ V+ S+ +G+G+T AYLLP
Sbjct: 3 VTTFSELELDESLLQALQEKGFTRPTVIQAAAIPPALEGRDVLGSAPTGTGKTAAYLLPA 62
Query: 200 VQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
+Q L P K P R +++ T E A Q A+ ++ LD + GGV+
Sbjct: 63 LQHL----LDFPRKKSGPPRILIVTPTRELAMQVADHARELAKHTHLDIATITGGVAYMN 118
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+V + +++AT +LQ+I++ N C + +VLDEAD + D GF +I I
Sbjct: 119 HAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLVLDEADRMLDMGFAQDIETI 174
>gi|90580587|ref|ZP_01236392.1| putative ATP-dependent RNA helicase SrmB [Photobacterium angustum
S14]
gi|90438245|gb|EAS63431.1| putative ATP-dependent RNA helicase SrmB [Photobacterium angustum
S14]
Length = 416
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 97/176 (55%), Gaps = 5/176 (2%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ F EL L +E+++A+E++G P+ +Q IP L+GK V+ S+ +G+G+T A+LLP+
Sbjct: 1 MKDFSELELDSELLRAIEEIGYSRPTVVQAQAIPHALDGKDVMASAPTGTGKTAAFLLPM 60
Query: 200 VQMLRRDEALLPMK-PMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
+Q L+ P K P R ++L T E A Q A+ ++ L GG+S
Sbjct: 61 IQHLQD----FPRKRPGPARILILTPTRELAIQVADQARALAKYTTLKVFTITGGISYDE 116
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
++ +++ATP ++++IE C I ++LDEAD + D GFG + ++
Sbjct: 117 HAEMLGKTQDIVVATPGRLMEYIEAEKFDCRAIECLILDEADRMLDMGFGKIVERL 172
>gi|332263067|ref|XP_003280577.1| PREDICTED: probable ATP-dependent RNA helicase DDX41 [Nomascus
leucogenys]
Length = 578
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 96/175 (54%), Gaps = 7/175 (4%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239
Query: 200 VQMLRRDEALLPM-KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSS------MENG 252
+ E LP K P +++C + E A Q + ++ + DSS + G
Sbjct: 240 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 299
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGF 307
G+S K + + M++ATP ++ ++ + VS D RY+ LDEAD + D GF
Sbjct: 300 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGF 354
>gi|113461438|ref|YP_719507.1| ATP-dependent RNA helicase SrmB [Haemophilus somnus 129PT]
gi|112823481|gb|ABI25570.1| ATP-dependent RNA helicase [Haemophilus somnus 129PT]
Length = 441
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 94/172 (54%), Gaps = 11/172 (6%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
+ F++ L +++KA+ + G P+ IQ IPA++ + V+ S+ +G+G+T A+LLP +
Sbjct: 4 TQFEDFDLAPQLLKALAQKGYSRPTVIQLDAIPAIMEARDVLGSAPTGTGKTAAFLLPAL 63
Query: 201 QML----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSS 256
Q L RR KP PR +VL T E A Q A+ ++ L + GGV+
Sbjct: 64 QHLLDYPRR-------KPGPPRILVLTPTRELAMQVAEQAEELAQFTHLSIATITGGVAY 116
Query: 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFG 308
+ +V N +++ATP +LQ+I++ N C + ++ DEAD + GFG
Sbjct: 117 QNHGEVFNKNQDIVVATPGRLLQYIKEENFDCRAVEILIFDEADRMLQMGFG 168
>gi|260901110|ref|ZP_05909505.1| ATP-dependent RNA helicase, DEAD-box family [Vibrio
parahaemolyticus AQ4037]
gi|308109381|gb|EFO46921.1| ATP-dependent RNA helicase, DEAD-box family [Vibrio
parahaemolyticus AQ4037]
Length = 307
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 94/181 (51%), Gaps = 11/181 (6%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F++LGL ++K ++ P++IQ IP + GK ++ SS +GSG+TLA++LP M
Sbjct: 3 FKDLGLDNRLLKNLKHYDFKKPTDIQKQAIPVAIAGKDLLASSKTGSGKTLAFVLP---M 59
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGF----HMAKFISHCARLDSSMENGGVSSKA 258
L + PRA++L T E A Q + M +S+ A L EN KA
Sbjct: 60 LHKSLKTKSFSAKDPRAVILAPTRELAKQVYGELRSMLAGLSYDAALILGGENFNDQVKA 119
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
L ++ATP + H+E R++ D + ++LDEAD + D GF PE+ +I N
Sbjct: 120 LRRYPK----FIVATPGRLADHLEHRSLYLDGLETLILDEADRMLDLGFAPELRRIHNAA 175
Query: 319 K 319
K
Sbjct: 176 K 176
>gi|90409157|ref|ZP_01217275.1| lipoate-protein ligase A, partial [Psychromonas sp. CNPT3]
gi|90309743|gb|EAS37910.1| lipoate-protein ligase A [Psychromonas sp. CNPT3]
Length = 321
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 101/177 (57%), Gaps = 3/177 (1%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF +LGL ++++A+ ++G P+ IQ IP +L G+ V+ + +G+G+T A++LP+++
Sbjct: 2 SFSKLGLSPQILQAISELGYKKPTPIQEKAIPVILKGRDVIACAQTGTGKTGAFVLPILE 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L+ DE + K + R ++L T E A Q K S L S GGV + ++
Sbjct: 62 RLK-DEPEIRAKRI--RVLILTPTRELAIQIEANVKAYSQHLSLTSLAMYGGVDDTSQKE 118
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
A + +L+ATP +L R + D+I+ +VLDEAD + D GF +I+KIL L
Sbjct: 119 ALIAGVDILVATPGRLLDMYTQRAIHFDEIQILVLDEADRMLDMGFIGDINKILERL 175
>gi|83858471|ref|ZP_00951993.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Oceanicaulis sp. HTCC2633]
gi|83853294|gb|EAP91146.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Oceanicaulis sp. HTCC2633]
Length = 480
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 95/174 (54%), Gaps = 4/174 (2%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F++LGL ++ A+ G P+ IQ IP L G+ V+ + +G+G+T ++ LP+++
Sbjct: 2 TFEDLGLSPALLSAIADAGYEKPTPIQEGAIPVALTGRDVLGIAQTGTGKTASFTLPMIE 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L R A M PR++VL T E A Q K + +L+ ++ GGVS + +
Sbjct: 62 RLSRGRARARM----PRSLVLAPTRELAAQVADNVKLYAKNHKLNMALLIGGVSFEPQKK 117
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
+ + +LIATP +L H E + + +V+DEAD + D GF P+I +IL
Sbjct: 118 ILDQGADILIATPGRLLDHFERGGLLLTGVEILVIDEADRMLDMGFIPDIERIL 171
>gi|261820510|ref|YP_003258616.1| ATP-dependent RNA helicase SrmB [Pectobacterium wasabiae WPP163]
gi|261604523|gb|ACX87009.1| DEAD/DEAH box helicase domain protein [Pectobacterium wasabiae
WPP163]
gi|385870686|gb|AFI89206.1| ATP-dependent RNA helicase SrmB [Pectobacterium sp. SCC3193]
Length = 441
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 94/176 (53%), Gaps = 5/176 (2%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
V++F EL L ++ A+ MG P+ IQ IP + G+ V+ S+ +G+G+T AYLLP+
Sbjct: 3 VTNFSELDLDESLLDALRDMGYERPTAIQAEAIPPAMEGRDVLGSAPTGTGKTAAYLLPV 62
Query: 200 VQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
+Q L P K P R ++L T E A Q A+ + LD + GGV+
Sbjct: 63 LQHL----IDFPRKKSGPPRILILTPTRELAMQVADQARAFAAHTHLDIATITGGVAYMN 118
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+V + +++AT +LQ+I++ N C + ++LDEAD + D GF +I I
Sbjct: 119 HAEVFSENQDVVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHI 174
>gi|49475435|ref|YP_033476.1| ATP-dependent RNA helicase [Bartonella henselae str. Houston-1]
gi|49238241|emb|CAF27451.1| ATP-dependent RNA helicase [Bartonella henselae str. Houston-1]
Length = 467
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 107/188 (56%), Gaps = 10/188 (5%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+++F +LGL A++IKAV+ +G VP+ IQ IP VL + V+ + +G+G+T +++LP+
Sbjct: 5 LNNFDDLGLSAKVIKAVKSVGYTVPTPIQSGTIPHVLQRRDVLGIAQTGTGKTASFVLPM 64
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQ-GFHMAKF-ISHCARLDSSMENGGVSSK 257
+ +L + A M PR ++L T E A Q + K+ I+H RL+ ++ GGVS +
Sbjct: 65 LTLLEKGRARARM----PRTLILEPTRELAAQVEENFDKYGINH--RLNVALLIGGVSFE 118
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI--L 315
+ + +LIATP +L H E + + +V+DEAD + D GF PEI +I L
Sbjct: 119 QQDRKLERGVDVLIATPGRLLDHFERGKLLLMGVEILVIDEADRMLDMGFIPEIERICKL 178
Query: 316 NPLKDSAL 323
P L
Sbjct: 179 TPFTRQTL 186
>gi|170718456|ref|YP_001783672.1| ATP-dependent RNA helicase SrmB [Haemophilus somnus 2336]
gi|168826585|gb|ACA31956.1| DEAD/DEAH box helicase domain protein [Haemophilus somnus 2336]
Length = 444
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 94/172 (54%), Gaps = 11/172 (6%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
+ F++ L +++KA+ + G P+ IQ IPA++ + V+ S+ +G+G+T A+LLP +
Sbjct: 8 TQFEDFDLAPQLLKALAQKGYSRPTVIQLDAIPAIMEARDVLGSAPTGTGKTAAFLLPAL 67
Query: 201 QML----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSS 256
Q L RR KP PR +VL T E A Q A+ ++ L + GGV+
Sbjct: 68 QHLLDYPRR-------KPGPPRILVLTPTRELAMQVAEQAEELAQFTHLSIATITGGVAY 120
Query: 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFG 308
+ +V N +++ATP +LQ+I++ N C + ++ DEAD + GFG
Sbjct: 121 QNHGEVFNKNQDIVVATPGRLLQYIKEENFDCRAVEILIFDEADRMLQMGFG 172
>gi|94309401|ref|YP_582611.1| RNA helicase [Cupriavidus metallidurans CH34]
gi|93353253|gb|ABF07342.1| RNA helicase [Cupriavidus metallidurans CH34]
Length = 540
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 96/184 (52%), Gaps = 8/184 (4%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF ELGL ++++AV + G P+ IQ IPA+L G ++ + +G+G+T + LP++Q
Sbjct: 2 SFSELGLSDKLVRAVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPMLQ 61
Query: 202 ML-----RRDEALLPMKPMHP--RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGV 254
+L R + P + P RA+VL T E A Q + +L S + GGV
Sbjct: 62 LLSETAARANGGNAP-RGARPNVRALVLTPTRELAAQVEESVRNYGKYLKLRSMVMFGGV 120
Query: 255 SSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+ + +++ATP +L H+ R + + +VLDEAD + D GF +I K+
Sbjct: 121 GINPQIEALRRGVDIVVATPGRLLDHVAQRTIDLSHVELLVLDEADRMLDMGFIHDIRKV 180
Query: 315 LNPL 318
LN L
Sbjct: 181 LNVL 184
>gi|434406298|ref|YP_007149183.1| DNA/RNA helicase, superfamily II [Cylindrospermum stagnale PCC
7417]
gi|428260553|gb|AFZ26503.1| DNA/RNA helicase, superfamily II [Cylindrospermum stagnale PCC
7417]
Length = 470
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 99/179 (55%), Gaps = 2/179 (1%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL E+++AV + G P+ IQ IPAVL+G+ ++ + +G+G+T + LPL+
Sbjct: 2 SFSTLGLSNEIVRAVTERGYTEPTPIQMQAIPAVLSGRDLLAGAQTGTGKTAGFTLPLLH 61
Query: 202 MLRRDEALLPMKPMHP--RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
L ++++ + P RA++L T E A Q + L+S + GGV+ +
Sbjct: 62 RLSSNKSVNGISSGFPPIRALILTPTRELAAQVEESVREYGKYLNLNSMVMFGGVNINSQ 121
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ + +L+ATP +L H++ V+ + +VLDEAD + D GF +I +IL+ L
Sbjct: 122 KRRLKGRVDILVATPGRLLDHVQQGTVNLSRVEVLVLDEADRMLDMGFIHDIRRILSLL 180
>gi|196015847|ref|XP_002117779.1| hypothetical protein TRIADDRAFT_51106 [Trichoplax adhaerens]
gi|190579664|gb|EDV19755.1| hypothetical protein TRIADDRAFT_51106 [Trichoplax adhaerens]
Length = 569
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 97/187 (51%), Gaps = 7/187 (3%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
V +F+E+ +I +++K G+ P+ IQ GIPAVL G+ ++ + +GSG+TL + LPL
Sbjct: 127 VKTFKEMKFPKSIIHSLKKQGITHPTPIQIQGIPAVLFGRDMIGIAFTGSGKTLVFTLPL 186
Query: 200 VQMLRRDEALLP-MKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSME------NG 252
+ E LP ++ P +++C + E A Q ++ K D E G
Sbjct: 187 IMFALEQETGLPFVRNEGPYGLIMCPSRELARQTYNTIKRFCQALTADGHPEIRTMLCIG 246
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
G+S K D + + +ATP ++ ++ + +S D RY+ +DEAD + D GF ++
Sbjct: 247 GISMKEQTDAMRRGVHIAVATPGRLMDMLDKKYLSLDICRYLAIDEADRMIDMGFEEDMR 306
Query: 313 KILNPLK 319
+ + K
Sbjct: 307 TVFSYFK 313
>gi|389722095|ref|ZP_10188778.1| ATP-dependent RNA helicase [Rhodanobacter sp. 115]
gi|388443987|gb|EIM00117.1| ATP-dependent RNA helicase [Rhodanobacter sp. 115]
Length = 437
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 94/175 (53%), Gaps = 3/175 (1%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL +++A+ + G P+ IQ IP VL G ++ ++ +G+G+T A+ LPL+Q
Sbjct: 2 SFESLGLVPTLLRALAEQGYAEPTPIQAAAIPEVLAGHDLLAAAQTGTGKTAAFALPLLQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L A P + PR ++L T E A Q + + + S++ GGV +
Sbjct: 62 RLIDAPAATPRR---PRVLILTPTRELAAQIDDNLRAYAKYLHVRSAVIFGGVGMGPQIN 118
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ ++IATP ++ H++ RN+ + +VLDEAD + D GF P + +IL
Sbjct: 119 ALRRGVDVVIATPGRLIDHMQQRNIELSGVDVLVLDEADRMLDMGFLPALKRILT 173
>gi|260774084|ref|ZP_05882999.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14]
gi|260611045|gb|EEX36249.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14]
Length = 395
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 94/177 (53%), Gaps = 3/177 (1%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF +LGL +IK+V ++G P+ IQ IP +L G+ ++ ++ +G+G+T ++LP++
Sbjct: 2 SFTQLGLNEALIKSVAELGYQTPTTIQTQAIPVILKGQDLIAAAQTGTGKTAGFVLPILD 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L + + + RA++L T E A Q K + L S GGV +A +
Sbjct: 62 RLMQGQT---QRKKRIRALILVPTRELAIQVADNVKQYAQYTELTSLAMYGGVDEQAQKQ 118
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +L+ATP +L R V D+I VVLDEAD + D GF I+KI+ L
Sbjct: 119 QLIDGVDVLVATPGRLLDMYAQRAVHFDEIEVVVLDEADRMLDMGFIEAINKIIQRL 175
>gi|336452449|ref|YP_004606915.1| cold-shock DEAD-box protein A [Helicobacter bizzozeronii CIII-1]
gi|335332476|emb|CCB79203.1| cold-shock DEAD-box protein A [Helicobacter bizzozeronii CIII-1]
Length = 470
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 114/219 (52%), Gaps = 32/219 (14%)
Query: 108 PENKPSPPQPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEI 167
PE P+P P+ S+IA SF++LGL A ++K++ ++G PS I
Sbjct: 2 PEQNPTPQTPKP---SDIAPR-------------SFKDLGLNARILKSIAEVGFTQPSPI 45
Query: 168 QCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEE 227
Q IPAVL GK V+ + +G+G+T A+ LP++Q L+ D+++ A+V+ T E
Sbjct: 46 QEKAIPAVLEGKDVIAQAQTGTGKTAAFALPIIQNLKNDKSI--------EALVITPTRE 97
Query: 228 SA----DQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIED 283
A D+ F + K +R + GG S K ++ ++IATP +L H+++
Sbjct: 98 LAMQISDEVFKLGK----NSRTRTICVYGGQSIKKQCELLERNPQVMIATPGRLLDHLKN 153
Query: 284 RNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSA 322
+ + + VVLDE+D + D GF +I +I + L A
Sbjct: 154 KRLKNFSPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEA 192
>gi|68360354|ref|XP_683832.1| PREDICTED: probable ATP-dependent RNA helicase DDX31 isoform 1
[Danio rerio]
Length = 739
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 78/243 (32%), Positives = 127/243 (52%), Gaps = 25/243 (10%)
Query: 106 NNPENKPSPPQPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEK-MGLFVP 164
NNPE P P Q+ +EK SN +F+EL L ++ + K + +
Sbjct: 131 NNPE-IPDVLSPAVNQV------KEKVFTSN-----TFEELNLHPHLVATLHKVLNVSSM 178
Query: 165 SEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLP--MKPMHPRAIVL 222
+ +Q IP +++GK V+ S +GSG+TLAY +P+VQ L +A+ P + P A+V+
Sbjct: 179 TSVQKQTIPVLMSGKDAVVRSQTGSGKTLAYGIPMVQFL---QAIQPKVKRSDGPLAVVI 235
Query: 223 CTTEESADQGFHM-AKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHI 281
T E A Q F M K + + + GG KA + I +LI+TP ++ HI
Sbjct: 236 VPTRELALQSFQMFQKLLRPFTWIVPGVLMGGEKKKAEKARLRKGINVLISTPGRLVDHI 295
Query: 282 EDR-NVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIA 340
++ +++ +R+++LDEAD + D GF +++ ILN AL + G Q +L++A I
Sbjct: 296 KNTLSIAFSAVRWLILDEADRILDLGFEKDLTVILN-----ALNAAGPDRQNVLLSATIT 350
Query: 341 EML 343
E L
Sbjct: 351 EGL 353
>gi|333894253|ref|YP_004468128.1| ATP-dependent RNA helicase SrmB [Alteromonas sp. SN2]
gi|332994271|gb|AEF04326.1| ATP-dependent RNA helicase SrmB [Alteromonas sp. SN2]
Length = 414
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 96/174 (55%), Gaps = 5/174 (2%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F++L L E+ AV MG P+ +Q + IP ++G+ ++ S+ +G+G+T A+LLP+ Q
Sbjct: 2 TFEDLELDEELCHAVADMGYESPTSVQSLVIPHAMDGRDILASAPTGTGKTAAFLLPVCQ 61
Query: 202 MLRRDEALLPMK-PMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE 260
L P K P R ++L T E A Q + A ++ + S + GG++
Sbjct: 62 FLLD----YPRKQPGSTRILILTPTRELALQVYEQAVELTKHTDIVSGVITGGINYGTDR 117
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+ + I +L+ATP + +HI++ C DI ++LDEAD + D GF +++I
Sbjct: 118 ETLSQSIDILVATPGRLFEHIQNEMADCRDIECLILDEADRMLDMGFRTIVNQI 171
>gi|50419843|ref|XP_458454.1| DEHA2C17534p [Debaryomyces hansenii CBS767]
gi|74659385|sp|Q6BTL5.1|DRS1_DEBHA RecName: Full=ATP-dependent RNA helicase DRS1
gi|49654120|emb|CAG86536.1| DEHA2C17534p [Debaryomyces hansenii CBS767]
Length = 771
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 113/208 (54%), Gaps = 12/208 (5%)
Query: 114 PPQPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIP 173
P + + ++ ++ E+++ + ++ ++FQ L L ++K + ++G PS IQ IP
Sbjct: 231 PVEDTAEDMAEFYADEEEATTAKKQLHTTFQSLQLSRPVLKGLSQLGYTKPSPIQSACIP 290
Query: 174 AVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESA---- 229
L GK +V + +GSG+T AY++P+++ L P K R IVL T E A
Sbjct: 291 IALLGKDIVAGAVTGSGKTAAYMIPIIERL----LYKPAKISSTRVIVLAPTRELAIQVC 346
Query: 230 DQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR-NVSC 288
D G + +F+++ L+ + GG++ + E ++IATP ++ HI + + S
Sbjct: 347 DVGKKIGQFVNN---LNFGLAVGGLNLRQQEQQLKTRPDIVIATPGRLIDHIRNSPSFSI 403
Query: 289 DDIRYVVLDEADTLFDRGFGPEISKILN 316
D + +V+DEAD + D GF E+++IL+
Sbjct: 404 DSLEVLVIDEADRMLDEGFQAELTEILS 431
>gi|88801632|ref|ZP_01117160.1| putative ATP-dependent RNA helicase [Polaribacter irgensii 23-P]
gi|88782290|gb|EAR13467.1| putative ATP-dependent RNA helicase [Polaribacter irgensii 23-P]
Length = 432
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 100/180 (55%), Gaps = 13/180 (7%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F++LGL ++KAVE+ G PS IQ IP +L GK ++ S+ +G+G+T + LP++Q
Sbjct: 2 TFKDLGLSPALVKAVEEKGYTKPSPIQEKAIPHILEGKDILASAQTGTGKTAGFTLPVLQ 61
Query: 202 MLRRDEALLPMKPMHP-----RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSS 256
L ++ HP RA+VL T E A Q + S + S++ GGV++
Sbjct: 62 YL--------VETKHPKYRPLRALVLTPTRELAAQVHDNVREYSKYVDIKSTVVFGGVNA 113
Query: 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
K + + +L+ATP +L + + +S + ++LDEAD + D GF +I+KI++
Sbjct: 114 KPQIATLRSGVDILVATPGRLLDLHDQKALSFKRVEVLILDEADRMLDMGFVRDINKIIS 173
>gi|365538577|ref|ZP_09363752.1| ATP-dependent RNA helicase [Vibrio ordalii ATCC 33509]
Length = 412
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 102/179 (56%), Gaps = 9/179 (5%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F LGL ++KAV ++G P+ IQ IPA+L GK+V+ ++ +G+G+T +++LP++QM
Sbjct: 3 FSNLGLSDPILKAVHELGYSAPTPIQEQAIPAILTGKNVIAAAQTGTGKTASFVLPILQM 62
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR---LDSSMENGGVSSKAL 259
L + + RA++L T E A Q + + I+ A+ L S GGV S+
Sbjct: 63 LSQGTT---QRAKRVRALILAPTRELALQ---VEENITQYAKYLPLTSLAMYGGVDSQKQ 116
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ + +LIATP +L R V D++ +V+DEAD + D GF +I+KI++ L
Sbjct: 117 KQRLIEGVDILIATPGRLLDMYGQRAVHFDELEVLVMDEADRMLDMGFIEDINKIVDRL 175
>gi|298241052|ref|ZP_06964859.1| DEAD/DEAH box helicase domain protein [Ktedonobacter racemifer DSM
44963]
gi|297554106|gb|EFH87970.1| DEAD/DEAH box helicase domain protein [Ktedonobacter racemifer DSM
44963]
Length = 562
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 96/176 (54%), Gaps = 11/176 (6%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SFQ+L L+ + M + + IQ IPA+L GK V+ S +GSG+TLAY +PL++
Sbjct: 3 SFQDLPLQPATRAVLASMQITEQTPIQAEAIPALLAGKDVIGQSATGSGKTLAYAIPLIE 62
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L +++ + +A+VL T E A Q + + RL +++ GG + +
Sbjct: 63 RLAKNKRV-------AQALVLVPTRELAVQVNSVLSTFAAPRRLTTALLVGG--RRYEKQ 113
Query: 262 VSNAPIG--MLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
+S G ++I TP + H+E N+ DIR VLDEAD + D GFGPEI +IL
Sbjct: 114 ISALRYGAQIIIGTPGRIKDHLEQGNLVLRDIRICVLDEADQMLDSGFGPEIEQIL 169
>gi|254506544|ref|ZP_05118685.1| ATP-dependent rna helicase, dead box family [Vibrio
parahaemolyticus 16]
gi|219550417|gb|EED27401.1| ATP-dependent rna helicase, dead box family [Vibrio
parahaemolyticus 16]
Length = 419
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 89/175 (50%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
+ F+ LGL ++ + +G P+E+Q IP VL GK V+ + +G+G+T A+ LP++
Sbjct: 3 TQFESLGLCPTILSTLSSLGFEQPTEVQTQAIPHVLEGKDVLAGAQTGTGKTAAFGLPII 62
Query: 201 QMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE 260
Q L EA + RA+VL T E A Q F + L GG S
Sbjct: 63 QKLIESEAKRDPQSNDVRALVLVPTRELAQQVFDNLVQYAQATELKIVAAYGGTSMNVQT 122
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
+LIATP ++ H+ +NVS ++VLDEAD + D GF P+I +IL
Sbjct: 123 RNLEQGCDILIATPGRLIDHMFCKNVSLLKSEFLVLDEADRMLDMGFMPDIQRIL 177
>gi|374366617|ref|ZP_09624693.1| RNA helicase [Cupriavidus basilensis OR16]
gi|373101750|gb|EHP42795.1| RNA helicase [Cupriavidus basilensis OR16]
Length = 577
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 98/186 (52%), Gaps = 15/186 (8%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF ELGL ++++AV + G P+ IQ IPA+L G ++ + +G+G+T + LPL+Q
Sbjct: 12 SFSELGLSDKLMRAVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPLLQ 71
Query: 202 MLRRDEA--------LLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGG 253
+L A LP+ RA+VL T E A Q + +L S + GG
Sbjct: 72 LLSESSAGREPARGQRLPV-----RALVLTPTRELAAQVEESVRNYGKYLKLRSMVMFGG 126
Query: 254 VS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
V + +E + + +++ATP +L H+ R + + +VLDEAD + D GF +I
Sbjct: 127 VGINPQIEQLKRG-VDIVVATPGRLLDHLSQRTIDLSHVEMLVLDEADRMLDMGFIHDIR 185
Query: 313 KILNPL 318
KILN L
Sbjct: 186 KILNVL 191
>gi|88812119|ref|ZP_01127371.1| probable atp-dependent rna helicase protein [Nitrococcus mobilis
Nb-231]
gi|88790623|gb|EAR21738.1| probable atp-dependent rna helicase protein [Nitrococcus mobilis
Nb-231]
Length = 429
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 93/177 (52%), Gaps = 4/177 (2%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F GL A++++AV G P+ IQ IP V+ G+ ++ ++ +G+G+T A+ LP++Q
Sbjct: 2 TFDCFGLSADILRAVRTEGYTTPTPIQAQAIPLVVAGRDLLAAAQTGTGKTAAFTLPILQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L + +P + PRA+VL T E A Q + L S+ GGV
Sbjct: 62 RL----SAVPTRHRAPRALVLTPTRELAAQVRESVRSYGRHLPLRSTAVFGGVGINPQIS 117
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ + +++ATP +L H++ R V + VLDEAD + D GF +I K++ L
Sbjct: 118 ALRSGVDVVVATPGRLLDHLQQRTVELSRVEIFVLDEADRMLDMGFIRDIRKVMAAL 174
>gi|86134655|ref|ZP_01053237.1| DEAD/DEAH box helicase [Polaribacter sp. MED152]
gi|85821518|gb|EAQ42665.1| DEAD/DEAH box helicase [Polaribacter sp. MED152]
Length = 438
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 95/175 (54%), Gaps = 5/175 (2%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL +KAVE+ G PS IQ IP +L GK V+ S+ +G+G+T + LP++Q
Sbjct: 2 SFKSLGLSDAFVKAVEEKGYTKPSPIQEKAIPHILEGKDVLASAQTGTGKTAGFTLPVLQ 61
Query: 202 MLRRDEALLP-MKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE 260
L E P +P+ RA+VL T E A Q + S + S++ GGV + +
Sbjct: 62 YL--SETKHPKYRPI--RALVLTPTRELAAQVHDNVREYSKYVNIKSAVVFGGVKAASQI 117
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
+ +L+ATP +L + + VS I +LDEAD + D GF +I+KI+
Sbjct: 118 ATLKRGVDILVATPGRLLDLHDQKAVSFKRIDVFILDEADRMLDMGFVRDINKII 172
>gi|320168199|gb|EFW45098.1| DEAD box polypeptide 49 [Capsaspora owczarzaki ATCC 30864]
Length = 611
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 120/246 (48%), Gaps = 15/246 (6%)
Query: 138 EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLL 197
+V ++F LGLK ++K E MGL P++IQ I VL G++V+ + +GSG+T A+ L
Sbjct: 175 QVNTTFAALGLKQWLVKQCEAMGLKHPTDIQVNTIKHVLAGRNVIGCAKTGSGKTAAFAL 234
Query: 198 PLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
P++ L D P P A+VL T E A Q + + L ++ GGV
Sbjct: 235 PILHRLSDD-------PYGPFAVVLTPTRELAFQIAEQFRALGKGINLREAVVVGGVDMM 287
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIE-DRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
V ++IATP + H+ + +S R++VLDEAD L + GF P++++IL
Sbjct: 288 QQSLVLAKRPHVIIATPGRLADHLNSNSQLSLARARFLVLDEADRLLEEGFSPDLNRIL- 346
Query: 317 PLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAGKVTAMLLEMDQAEVFD 376
A SN Q QT+L +A I + + S M + A + +DQ V
Sbjct: 347 -----AAASNPQR-QTLLFSATITKNIANLESMSMSNVVHYETKSSVATVTTLDQRFVIT 400
Query: 377 LTESQD 382
+ +D
Sbjct: 401 PAKVKD 406
>gi|449295671|gb|EMC91692.1| hypothetical protein BAUCODRAFT_301346 [Baudoinia compniacensis
UAMH 10762]
Length = 909
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 119/226 (52%), Gaps = 25/226 (11%)
Query: 126 ASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSS 185
A+ K+ + +FQ +GL A ++KA+ + G VP+ IQ +P +L+G+ VV +
Sbjct: 62 AAVNRKADSRTTKKAGAFQRMGLNANLLKAITRKGFTVPTPIQRKTVPLILDGQDVVGMA 121
Query: 186 GSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARL 245
+GSG+T A+++P+++ L+ A + RAIVL + E A Q + K L
Sbjct: 122 RTGSGKTAAFVIPMIEKLKSHSA-----KVGARAIVLSPSRELALQTLKVVKDFGRGTDL 176
Query: 246 DSSMENGGVSSKALED-----VSNAPIGMLIATPSEVLQHIE-DRNVSCDDIRYVVLDEA 299
+++ GG S LED SN I +IATP +H++ + + ++YVV DEA
Sbjct: 177 RATLLVGGDS---LEDQFGSIASNPDI--IIATPGR-FEHLKVEMGLELSSVKYVVFDEA 230
Query: 300 DTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 345
D LF+ GF ++ +I++ L S QT+L +A + + L E
Sbjct: 231 DRLFEMGFAAQLHEIMHSLPASR--------QTLLFSATLPKGLVE 268
>gi|209964196|ref|YP_002297111.1| DEAD/DEAH box helicase [Rhodospirillum centenum SW]
gi|209957662|gb|ACI98298.1| DEAD/DEAH box helicase protein [Rhodospirillum centenum SW]
Length = 528
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 120/233 (51%), Gaps = 23/233 (9%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF +LGL ++KAVE++G P+ IQ +PA L G+ VV S+ +G+G+T A++LP +Q
Sbjct: 9 SFSDLGLLPHLLKAVEELGFTTPTPIQQQALPAALTGRDVVASANTGTGKTAAFVLPSLQ 68
Query: 202 ML---RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
+ R EA PR +VL T E A Q + +S R+ + GG+ +
Sbjct: 69 RIATTARAEAA-----WGPRVLVLTPTRELASQVLESVRNLSKFGRIQTGTILGGMPYRQ 123
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
++ + +++ATP ++ H+E + + +VLDEAD + D GF + I
Sbjct: 124 QLEMLRRRVDLIVATPGRLMDHMERGRLDLSGVEVLVLDEADRMLDMGFREAVEFIA--- 180
Query: 319 KDSALKSNGQGFQTILVTAAI---AEMLGEQLSSLMECLERDNAGK--VTAML 366
+A + QT+L TA + AE L + L+ + + D AGK VTA +
Sbjct: 181 --AACPAE---RQTLLFTATLDRTAERLAQTLTR--DPVRIDVAGKAVVTAQV 226
>gi|28076989|ref|NP_082317.1| ATP-dependent RNA helicase DDX54 [Mus musculus]
gi|46576606|sp|Q8K4L0.1|DDX54_MOUSE RecName: Full=ATP-dependent RNA helicase DDX54; AltName: Full=DEAD
box protein 54
gi|21325958|gb|AAM47540.1|AF319547_1 ATP-dependent RNA-helicase [Mus musculus]
gi|55249609|gb|AAH43699.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 [Mus musculus]
Length = 874
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 114/230 (49%), Gaps = 20/230 (8%)
Query: 116 QPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAV 175
+P+ +++ ++++K SG FQ +GL + K + K G VP+ IQ IP +
Sbjct: 77 EPDTREMVRAQNKKKKKSGG-------FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVI 129
Query: 176 LNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHM 235
L+GK VV + +GSG+T +LLP+ + L+ A RA++L T E A Q
Sbjct: 130 LDGKDVVAMARTGSGKTACFLLPMFERLKARSA-----QTGARALILSPTRELALQTMKF 184
Query: 236 AKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 295
K + L +++ GG + + ++IATP ++ + N+ + YVV
Sbjct: 185 TKELGKFTGLKTALILGGDKMEDQFAALHENPDIIIATPGRLVHVAVEMNLKLQSVEYVV 244
Query: 296 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 345
DEAD LF+ GF ++ +I+ L G QT+L +A + ++L E
Sbjct: 245 FDEADRLFEMGFAEQLQEIIGRLPG--------GHQTVLFSATLPKLLVE 286
>gi|26327389|dbj|BAC27438.1| unnamed protein product [Mus musculus]
Length = 874
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 114/230 (49%), Gaps = 20/230 (8%)
Query: 116 QPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAV 175
+P+ +++ ++++K SG FQ +GL + K + K G VP+ IQ IP +
Sbjct: 77 EPDTREMVRAQNKKKKKSGG-------FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVI 129
Query: 176 LNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHM 235
L+GK VV + +GSG+T +LLP+ + L+ A RA++L T E A Q
Sbjct: 130 LDGKDVVAMARTGSGKTACFLLPMFERLKARSA-----QTGARALILSPTRELALQTMKF 184
Query: 236 AKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 295
K + L +++ GG + + ++IATP ++ + N+ + YVV
Sbjct: 185 TKELGKFTGLKTALILGGDKMEDQFAALHENPDIIIATPGRLVHVAVEMNLKLQSVEYVV 244
Query: 296 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 345
DEAD LF+ GF ++ +I+ L G QT+L +A + ++L E
Sbjct: 245 FDEADRLFEMGFAEQLQEIIGRLPG--------GHQTVLFSATLPKLLVE 286
>gi|328783258|ref|XP_392069.4| PREDICTED: ATP-dependent RNA helicase abstrakt isoform 1 [Apis
mellifera]
Length = 621
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 109/207 (52%), Gaps = 15/207 (7%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ ++ +E+ G+ P+ IQ GIP VL+G+ ++ + +GSG+TL ++LP+
Sbjct: 179 LKSFKEMKFHRGILNGLEQKGIVKPTPIQIQGIPTVLSGRDMIGIAFTGSGKTLVFVLPI 238
Query: 200 VQMLRRDEALLP-MKPMHPRAIVLCTTEESADQGFHMAKFISH------CARLDSSMENG 252
+ E +P ++ P +++C + E A Q + + + ++ C + S + G
Sbjct: 239 IMFCLEQEVAMPFVRNEGPYGLIICPSRELAKQTYDIIRHYTNSLRQAGCPEIRSCLAIG 298
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
GV +V N + +++ATP ++ ++ + V RY+ +DEAD + D GF ++
Sbjct: 299 GVPVSESLEVINKGVHIMVATPGRLMDMLDKKMVKLSVCRYLCMDEADRMIDMGFEEDVR 358
Query: 313 KILNPLKDSALKSNGQGFQTILVTAAI 339
I + + GQ QT+L +A +
Sbjct: 359 TIFSFFR-------GQR-QTLLFSATM 377
>gi|393764218|ref|ZP_10352830.1| ATP-dependent RNA helicase SrmB [Alishewanella agri BL06]
gi|397170927|ref|ZP_10494337.1| ATP-dependent RNA helicase SrmB [Alishewanella aestuarii B11]
gi|392604848|gb|EIW87747.1| ATP-dependent RNA helicase SrmB [Alishewanella agri BL06]
gi|396087401|gb|EJI85001.1| ATP-dependent RNA helicase SrmB [Alishewanella aestuarii B11]
Length = 406
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 98/178 (55%), Gaps = 11/178 (6%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF E L + +A+E G P++IQ + IP L G+ ++ S+ +G+G+TLA++LP +Q
Sbjct: 2 SFAEFQLDDALNQALESAGFDQPTQIQQLAIPPALEGRDLLASAPTGTGKTLAFVLPAIQ 61
Query: 202 ML----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
L RRD P R +V+ T E A Q + K S L+ + GG++
Sbjct: 62 YLLDFPRRD-------PGFARVLVMTPTRELAYQVYDTFKQFSQFTTLNVGLITGGINYG 114
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
+ +D +L+ATP ++++++ + D++ ++LDEAD + D GF E+++I+
Sbjct: 115 SHKDTLEKNNDILVATPGRLIEYLDAESFQADEVELLILDEADRMLDMGFIGEMNRIV 172
>gi|343512818|ref|ZP_08749935.1| ATP-dependent RNA helicase [Vibrio scophthalmi LMG 19158]
gi|343515804|ref|ZP_08752853.1| ATP-dependent RNA helicase [Vibrio sp. N418]
gi|342794506|gb|EGU30271.1| ATP-dependent RNA helicase [Vibrio scophthalmi LMG 19158]
gi|342797618|gb|EGU33262.1| ATP-dependent RNA helicase [Vibrio sp. N418]
Length = 419
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 90/176 (51%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F LGL+ +++ V ++G P+E+Q IP VL GK V+ + +G+G+T A+ LP++Q
Sbjct: 5 FANLGLEPTLVETVSQLGFNSPTEVQLHAIPPVLEGKDVLAGAQTGTGKTAAFGLPIIQR 64
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDV 262
L + + A+VL T E A Q F + L GG S
Sbjct: 65 LSNQDYSRDPQRNDVSALVLVPTRELAQQVFDNLTAYAVNTSLKIVTAYGGTSMNVQTRN 124
Query: 263 SNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +LIATP +L H+ +NVS + +VLDEAD + D GF P++ +IL +
Sbjct: 125 LHQGCDILIATPGRLLDHMHCKNVSLQRTQTLVLDEADRMLDMGFWPDLKRILGKM 180
>gi|340725455|ref|XP_003401085.1| PREDICTED: ATP-dependent RNA helicase abstrakt-like [Bombus
terrestris]
Length = 625
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 109/207 (52%), Gaps = 15/207 (7%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ ++ +E+ G+ P+ IQ GIP VL+G+ ++ + +GSG+TL ++LP+
Sbjct: 183 LKSFKEMKFHRGILNGLEQKGIVKPTPIQVQGIPTVLSGRDMIGIAFTGSGKTLVFVLPI 242
Query: 200 VQMLRRDEALLP-MKPMHPRAIVLCTTEESADQGFHMAKFISH------CARLDSSMENG 252
+ E +P ++ P +++C + E A Q + + + ++ C + S + G
Sbjct: 243 IMFCLEQEVAMPFVRNEGPYGLIICPSRELAKQTYDIIRHYTNTLRQAGCPEIRSCLAIG 302
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
GV +V N + +++ATP ++ ++ + V RY+ +DEAD + D GF ++
Sbjct: 303 GVPVSESLEVINKGVHIMVATPGRLMDMLDKKMVKLSVCRYLCMDEADRMIDMGFEEDVR 362
Query: 313 KILNPLKDSALKSNGQGFQTILVTAAI 339
I + + GQ QT+L +A +
Sbjct: 363 TIFSFFR-------GQR-QTLLFSATM 381
>gi|227112916|ref|ZP_03826572.1| ATP-dependent RNA helicase SrmB [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 441
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 94/176 (53%), Gaps = 5/176 (2%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
V++F EL L ++ A+ MG P+ IQ IP + G+ V+ S+ +G+G+T AYLLP+
Sbjct: 3 VTNFSELDLDESLLDALRDMGYERPTVIQAEAIPPAMEGRDVLGSAPTGTGKTAAYLLPV 62
Query: 200 VQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
+Q L P K P R ++L T E A Q A+ + LD + GGV+
Sbjct: 63 LQHL----IDFPRKKSGPPRILILTPTRELAMQVADQARAFAAHTHLDIATITGGVAYMN 118
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+V + +++AT +LQ+I++ N C + ++LDEAD + D GF +I I
Sbjct: 119 HAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHI 174
>gi|440229962|ref|YP_007343755.1| DNA/RNA helicase, superfamily II [Serratia marcescens FGI94]
gi|440051667|gb|AGB81570.1| DNA/RNA helicase, superfamily II [Serratia marcescens FGI94]
Length = 455
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 65/179 (36%), Positives = 101/179 (56%), Gaps = 5/179 (2%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL AE+++AVE+ G P+ IQ IP VL G+ ++ S+ +G+G+T + LP++Q
Sbjct: 2 SFETLGLNAEILRAVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPVLQ 61
Query: 202 MLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSSKAL 259
+L + P+K P RA++L T E A Q G +++ + H RL S + GGVS
Sbjct: 62 LLSSKPS--PVKGRRPVRALILTPTRELAAQIGENVSAYSQHL-RLRSLVVFGGVSINPQ 118
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +LIATP +L V ++ +VLDEAD + D GF +I ++L L
Sbjct: 119 MMKLRGGVDILIATPGRLLDLEHQNAVDLSNVEILVLDEADRMLDMGFIHDIRRVLAKL 177
>gi|329767883|ref|ZP_08259397.1| hypothetical protein HMPREF0428_01094 [Gemella haemolysans M341]
gi|328838671|gb|EGF88270.1| hypothetical protein HMPREF0428_01094 [Gemella haemolysans M341]
Length = 486
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 112/214 (52%), Gaps = 18/214 (8%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+++F+ELG+ E ++++ M P+ IQ IP VL+G ++ + +GSG+T A+ +PL
Sbjct: 1 MTTFEELGVSQETVQSLRNMNFISPTGIQTETIPYVLSGIDILAQAQTGSGKTGAFGIPL 60
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS-SKA 258
V +R+ + L ++++L T E A Q + +S L S+ GG S +
Sbjct: 61 VDTVRKSDQL--------QSLILAPTRELAQQVGEQLRLMSRAKGLKVSIVFGGTSIERQ 112
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
++D+ P +++ TP V+ HI R + D + ++VLDEAD + + GF ++ IL+ +
Sbjct: 113 IQDLKKRP-QIIVGTPGRVIDHINRRTIKLDSLTHLVLDEADEMLNMGFIEDVRFILSKI 171
Query: 319 KDSALKSNGQGFQTILVTAAIAEMLGEQLSSLME 352
QT+L +A + + + E M+
Sbjct: 172 TSR--------HQTLLFSATMPKTIMELSKDFMK 197
>gi|50122209|ref|YP_051376.1| ATP-dependent RNA helicase SrmB [Pectobacterium atrosepticum
SCRI1043]
gi|49612735|emb|CAG76185.1| ATP-dependent RNA helicase [Pectobacterium atrosepticum SCRI1043]
Length = 441
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 94/176 (53%), Gaps = 5/176 (2%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
V++F EL L ++ A+ MG P+ IQ IP + G+ V+ S+ +G+G+T AYLLP+
Sbjct: 3 VTNFSELDLDESLLDALRDMGYERPTAIQAEAIPPAMEGRDVLGSAPTGTGKTAAYLLPV 62
Query: 200 VQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
+Q L P K P R ++L T E A Q A+ + LD + GGV+
Sbjct: 63 LQHL----IDFPRKKSGPPRVLILTPTRELAMQVADQARAFAAHTHLDIATITGGVAYMN 118
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+V + +++AT ++Q+I++ N C + ++LDEAD + D GF +I I
Sbjct: 119 HAEVFSENQDVVVATTGRLMQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHI 174
>gi|168065191|ref|XP_001784538.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663919|gb|EDQ50659.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 748
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 115/220 (52%), Gaps = 23/220 (10%)
Query: 128 EREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGS 187
E++K SG F+ LGL + +AV++ G +P+ IQ +P +L G VV + +
Sbjct: 1 EKKKKSGG-------FETLGLSLPVFRAVKRKGYRIPTPIQRKTLPLILAGYDVVAMART 53
Query: 188 GSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDS 247
GSG+T A+L+P+++ L RA++L + E A Q F K +S L
Sbjct: 54 GSGKTAAFLIPMIEKLVEHS-----NNAGARAVILSPSRELALQTFKFCKELSKYTDLKI 108
Query: 248 SMENGGVSSKA-LEDVSNAPIGMLIATPSEVLQHI-EDRNVSCDDIRYVVLDEADTLFDR 305
++ GG S +A E ++ P ++IATP ++ H+ E +S + Y+V DEAD LF+
Sbjct: 109 AILVGGDSMEAQFEQLAGNP-DVIIATPGRLMHHLSEVEGMSLRTVEYIVFDEADRLFEM 167
Query: 306 GFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 345
GF ++ +I++ L G+ Q +L +A + +L +
Sbjct: 168 GFAEQLRQIMSHL--------GESRQVLLFSATLPRLLAD 199
>gi|148687811|gb|EDL19758.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 [Mus musculus]
Length = 855
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 129/271 (47%), Gaps = 28/271 (10%)
Query: 116 QPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAV 175
+P+ +++ ++++K SG FQ +GL + K + K G VP+ IQ IP +
Sbjct: 79 EPDTREMVRAQNKKKKKSGG-------FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVI 131
Query: 176 LNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHM 235
L+GK VV + +GSG+T +LLP+ + L+ A RA++L T E A Q
Sbjct: 132 LDGKDVVAMARTGSGKTACFLLPMFERLKARSA-----QTGARALILSPTRELALQTMKF 186
Query: 236 AKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 295
K + L +++ GG + + ++IATP ++ + N+ + YVV
Sbjct: 187 TKELGKFTGLKTALILGGDKMEDQFAALHENPDIIIATPGRLVHVAVEMNLKLQSVEYVV 246
Query: 296 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE--QLSSLMEC 353
DEAD LF+ GF ++ +I+ L G QT+L +A + ++L E + S +
Sbjct: 247 FDEADRLFEMGFAEQLQEIIGRLPG--------GHQTVLFSATLPKLLVEFARAGSFLLV 298
Query: 354 LERDNAGKVTAMLLE-----MDQAEVFDLTE 379
E D V LL+ DQ VF T+
Sbjct: 299 RE-DTKAAVLLYLLQNVVRPQDQTVVFVATK 328
>gi|167646708|ref|YP_001684371.1| DEAD/DEAH box helicase [Caulobacter sp. K31]
gi|167349138|gb|ABZ71873.1| DEAD/DEAH box helicase domain protein [Caulobacter sp. K31]
Length = 678
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 92/177 (51%), Gaps = 4/177 (2%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++ F ELGL ++AV G + IQ IP L G+ V+ + +G+G+T A+ LPL
Sbjct: 1 MTEFSELGLSPTTLQAVADTGYTTATPIQAAAIPVALAGQDVLGIAQTGTGKTAAFTLPL 60
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
+ L A K PRA+V+ T E ADQ + + +L ++ GGVS
Sbjct: 61 IDKLMNGRA----KARMPRALVIAPTRELADQVASSFEKYAKGTKLSWALLIGGVSFGDQ 116
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
E + + +LIATP +L H E + ++++V+DEAD + D GF P+I +I
Sbjct: 117 EKKLDRGVDVLIATPGRLLDHFERGKLLMTGVQFLVVDEADRMLDMGFIPDIERIFK 173
>gi|363752775|ref|XP_003646604.1| hypothetical protein Ecym_4775 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890239|gb|AET39787.1| hypothetical protein Ecym_4775 [Eremothecium cymbalariae
DBVPG#7215]
Length = 500
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 106/187 (56%), Gaps = 6/187 (3%)
Query: 134 GSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTL 193
GS + V F ELGL + +KA+EKMG +++Q IP ++ G+ V+ ++ +GSG+TL
Sbjct: 29 GSETKAVEKFDELGLSKQTLKAIEKMGFTTMTQVQAKTIPPLMAGRDVLGAAKTGSGKTL 88
Query: 194 AYLLPLVQMLRRDEALLPMKPMHPRAIVLCT-TEESADQGFHMAKFISHCARLDSSMENG 252
A+L+P ++ML L KP + +++ T T E A Q F +A+ + + G
Sbjct: 89 AFLIPAIEMLHS----LKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIG 144
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIED-RNVSCDDIRYVVLDEADTLFDRGFGPEI 311
G + + + + + ++IATP +L H+++ + +++ +++DEAD + + GF E+
Sbjct: 145 GANRRQEAEKLSKGVNLIIATPGRLLDHLQNTKGFIFKNLKALIIDEADRILEIGFEDEM 204
Query: 312 SKILNPL 318
+I+ L
Sbjct: 205 KQIIKIL 211
>gi|188591276|ref|YP_001795876.1| ATP-dependent RNA helicase hydrolase [Cupriavidus taiwanensis LMG
19424]
gi|170938170|emb|CAP63156.1| ATP-dependent RNA helicase hydrolase [Cupriavidus taiwanensis LMG
19424]
Length = 516
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 97/183 (53%), Gaps = 7/183 (3%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF ELGL ++++AV + G P+ IQ IPA+L G ++ + +G+G+T + LP++Q
Sbjct: 2 SFSELGLSEKIVRAVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPMLQ 61
Query: 202 ML-----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS- 255
+L R+ + RA+VL T E A Q + RL S + GGV
Sbjct: 62 LLSETAARQAGGAQRGGRVAVRALVLTPTRELAAQVEESVRNYGKYLRLRSMVMFGGVGI 121
Query: 256 SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
+ +E + + +++ATP +L H+ R + + +VLDEAD + D GF +I KIL
Sbjct: 122 NPQIEQLKRG-VEIVVATPGRLLDHVSQRTIDLSQVELLVLDEADRMLDMGFIHDIRKIL 180
Query: 316 NPL 318
N L
Sbjct: 181 NVL 183
>gi|403059557|ref|YP_006647774.1| ATP-dependent RNA helicase [Pectobacterium carotovorum subsp.
carotovorum PCC21]
gi|402806883|gb|AFR04521.1| ATP-dependent RNA helicase [Pectobacterium carotovorum subsp.
carotovorum PCC21]
Length = 441
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 94/176 (53%), Gaps = 5/176 (2%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
V++F EL L ++ A+ MG P+ IQ IP + G+ V+ S+ +G+G+T AYLLP+
Sbjct: 3 VTNFSELDLDESLLDALRDMGYERPTVIQAEAIPPAMEGRDVLGSAPTGTGKTAAYLLPV 62
Query: 200 VQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
+Q L P K P R ++L T E A Q A+ + LD + GGV+
Sbjct: 63 LQHL----IDFPRKKSGPPRILILTPTRELAMQVADQARAFAAHTHLDIATITGGVAYMN 118
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+V + +++AT +LQ+I++ N C + ++LDEAD + D GF +I I
Sbjct: 119 HAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHI 174
>gi|375109359|ref|ZP_09755608.1| ATP-dependent RNA helicase SrmB [Alishewanella jeotgali KCTC 22429]
gi|374570663|gb|EHR41797.1| ATP-dependent RNA helicase SrmB [Alishewanella jeotgali KCTC 22429]
Length = 406
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 98/178 (55%), Gaps = 11/178 (6%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF E L + +A+E G P++IQ + IP L G+ ++ S+ +G+G+TLA++LP +Q
Sbjct: 2 SFAEFQLDDALNQALESAGFDQPTQIQQLAIPPALEGRDLLASAPTGTGKTLAFVLPAIQ 61
Query: 202 ML----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257
L RRD P R +V+ T E A Q + K S L+ + GG++
Sbjct: 62 YLLDFPRRD-------PGFARVLVMTPTRELAYQVYDTFKQFSQFTTLNVGLITGGINYG 114
Query: 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
+ +D +L+ATP ++++++ + D++ ++LDEAD + D GF E+++I+
Sbjct: 115 SHKDTLEKNNDILVATPGRLIEYLDAESFQADEVELLILDEADRMLDMGFIGEMNRIV 172
>gi|358384615|gb|EHK22212.1| hypothetical protein TRIVIDRAFT_209061 [Trichoderma virens Gv29-8]
Length = 897
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 70/220 (31%), Positives = 112/220 (50%), Gaps = 15/220 (6%)
Query: 122 LSNIASEREKSS--GSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGK 179
L AS R+ S+ G + FQ +G+ A ++KA+ + G VP+ IQ IP VL K
Sbjct: 66 LQQAASYRKASNLKGRTVKKGGGFQAMGINANLLKAIARKGFSVPTPIQRKTIPLVLERK 125
Query: 180 SVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 239
VV + +GSG+T A+++P+++ LR + RA++L + E A Q + K +
Sbjct: 126 DVVGMARTGSGKTAAFVIPMIEKLRAHSS-----KFGSRALILSPSRELAIQTLKVVKEL 180
Query: 240 SHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 299
L S + GG S + +A ++IATP L + + I+YVV DEA
Sbjct: 181 GRGTDLKSVLLVGGDSLEEQFGFMSANPDIVIATPGRFLHLKVEMGLDLSSIKYVVFDEA 240
Query: 300 DTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 339
D LF+ GF ++++IL+ L S QT+L +A +
Sbjct: 241 DRLFEMGFATQLTEILHALPPSR--------QTLLFSATL 272
>gi|34784845|gb|AAH56735.1| Si:ch211-89p1.3 protein [Danio rerio]
Length = 673
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 78/243 (32%), Positives = 127/243 (52%), Gaps = 25/243 (10%)
Query: 106 NNPENKPSPPQPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEK-MGLFVP 164
NNPE P P Q+ +EK SN +F+EL L ++ + K + +
Sbjct: 65 NNPE-IPDVLSPAVNQV------KEKVFTSN-----TFEELNLHPHLVATLHKVLNVSSM 112
Query: 165 SEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLP--MKPMHPRAIVL 222
+ +Q IP +++GK V+ S +GSG+TLAY +P+VQ L +A+ P + P A+V+
Sbjct: 113 TSVQKQTIPVLMSGKDAVVRSQTGSGKTLAYGIPMVQFL---QAIQPKVKRSDGPLAVVI 169
Query: 223 CTTEESADQGFHM-AKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHI 281
T E A Q F M K + + + GG KA + I +LI+TP ++ HI
Sbjct: 170 VPTRELALQSFQMFQKLLRPFTWIVPGVLMGGEKKKAEKARLRKGINVLISTPGRLVDHI 229
Query: 282 EDR-NVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIA 340
++ +++ +R+++LDEAD + D GF +++ ILN AL + G Q +L++A I
Sbjct: 230 KNTLSIAFSAVRWLILDEADRILDLGFEKDLTVILN-----ALNTAGPDRQNVLLSATIT 284
Query: 341 EML 343
E L
Sbjct: 285 EGL 287
>gi|387169548|gb|AFJ66207.1| hypothetical protein 34G24.5 [Capsella rubella]
Length = 591
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 108/187 (57%), Gaps = 7/187 (3%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ +F+++ ++ +++ G+ P+ IQ G+P VL+G+ ++ + +GSG+TLA++LP+
Sbjct: 145 IKNFEDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLAFVLPM 204
Query: 200 VQMLRRDEALLPMKPMH-PRAIVLCTTEESADQGFH-MAKFISHCAR-----LDSSMENG 252
+ + ++E ++P+ P P +++C + E A Q + + +F++ + L S + G
Sbjct: 205 IMIALQEEMMMPIAPREGPIGLIVCPSRELASQTYEVIEQFVAPLVKAGYPTLRSLLCIG 264
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
GV ++ +V + +++ATP + + + +S D RY+ LDEAD L D GF +I
Sbjct: 265 GVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMSLDACRYLTLDEADRLVDLGFEDDIR 324
Query: 313 KILNPLK 319
+I + K
Sbjct: 325 EIFDHFK 331
>gi|254468401|ref|ZP_05081807.1| dead/deah box helicase domain protein [beta proteobacterium KB13]
gi|207087211|gb|EDZ64494.1| dead/deah box helicase domain protein [beta proteobacterium KB13]
Length = 444
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 106/216 (49%), Gaps = 12/216 (5%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF G + KA+ ++ P+ IQ IP VL+GK V+ S+ +G+G+T A+ LPL+
Sbjct: 2 SFSNFGFIPPIGKAISRINYSTPTPIQEQCIPVVLSGKDVLASAQTGTGKTAAFCLPLLN 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
++ + + + P ++L T E A Q K SH + GGVS K
Sbjct: 62 LVEKKPKHKHKRNISPDVLILSPTRELATQIEQELKRFSHFMDTNIVSVVGGVSYKLQNK 121
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDS 321
+ + + L+ATP ++ ++ R ++ I +V+DEAD + D GF P+I KI
Sbjct: 122 LLKSNVNFLVATPGRLMDLVKQRKINLKHIDALVIDEADRMLDMGFIPDIKKI------- 174
Query: 322 ALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERD 357
+S Q Q ++ TA L +Q+ + + +D
Sbjct: 175 -FESTSQDQQVLMFTAT----LNKQIEKIAQQFLKD 205
>gi|346325171|gb|EGX94768.1| dead box ATP-dependent rna helicase [Cordyceps militaris CM01]
Length = 891
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 107/199 (53%), Gaps = 7/199 (3%)
Query: 122 LSNIASEREKSS--GSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGK 179
L AS R+ S+ G + FQ +G+ A ++KA+ + G VP+ IQ IP VL+ K
Sbjct: 62 LRQAASFRKSSNLKGRTVKKGGGFQAMGINANLLKAIARKGFSVPTPIQRKTIPLVLDRK 121
Query: 180 SVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 239
VV + +GSG+T A+++P+++ LR A RA+++ + E A Q + K +
Sbjct: 122 DVVGMARTGSGKTAAFVIPMIERLRAHSAQFG-----SRALIMSPSRELAIQTLKVVKEL 176
Query: 240 SHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 299
S L + + GG S + A ++IATP L + +++ I+YVV DEA
Sbjct: 177 SRGTDLKAVLLVGGDSLEEQFGFMAANPDIVIATPGRFLHLKVEMSLNLSSIKYVVFDEA 236
Query: 300 DTLFDRGFGPEISKILNPL 318
D LF+ GF ++++IL+ L
Sbjct: 237 DRLFEMGFAAQLTEILHAL 255
>gi|417948503|ref|ZP_12591648.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
splendidus ATCC 33789]
gi|342809673|gb|EGU44783.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
splendidus ATCC 33789]
Length = 443
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 94/181 (51%), Gaps = 11/181 (6%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F++LGL ++K ++ +EIQ IP + GK ++ SS +GSG+TLA++LP++
Sbjct: 3 FKDLGLDNRLLKNLKHYDFKKATEIQSKAIPVAIAGKDLLASSKTGSGKTLAFVLPMIHK 62
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGF----HMAKFISHCARLDSSMENGGVSSKA 258
+ +A PR ++L T E A Q + M +S+ A L EN KA
Sbjct: 63 ALKTKAF---SARDPRGVILAPTRELAKQVYGELRSMLGGLSYEATLILGGENFNDQVKA 119
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
L ++ATP + H+E R++ D + ++LDEAD + D GF PE+ +I N
Sbjct: 120 LRKYPR----FIVATPGRLADHLEHRSLFLDGVETLILDEADRMLDLGFAPELRRIANAA 175
Query: 319 K 319
K
Sbjct: 176 K 176
>gi|294142025|ref|YP_003558003.1| DEAD/DEAH box helicase [Shewanella violacea DSS12]
gi|293328494|dbj|BAJ03225.1| ATP-dependent RNA helicase, DEAD box family [Shewanella violacea
DSS12]
Length = 427
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 74/253 (29%), Positives = 128/253 (50%), Gaps = 23/253 (9%)
Query: 127 SEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSG 186
SER S+ + F L L+ E+++ + ++G P+ IQ IPA+L G+ ++ +
Sbjct: 2 SERVDSAAKHG-----FSSLSLRPELLQVLTELGYTQPTPIQTQAIPAILAGQDIMAGAQ 56
Query: 187 SGSGRTLAYLLPLVQ------MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 240
+GSG+T A+ LP++ L++ EA RA+VL T E A Q H F+
Sbjct: 57 TGSGKTAAFALPILNKLTAQICLQKTEAQDSADKPAIRALVLTPTRELALQ-VH-GSFVK 114
Query: 241 HC--ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 298
+ ++ S++ GGVS A + A + +L+ATP +L H+ +++ + + ++V DE
Sbjct: 115 YAKLTQVKSALVYGGVSIDAQAQILAAGVDILVATPGRLLDHLRRGSLNLNQLEFLVFDE 174
Query: 299 ADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDN 358
AD + D GF EI I+ L + QT+L +A E + SL+ ++
Sbjct: 175 ADRMLDMGFKDEIDAIVKQLPKTR--------QTLLFSATFDESIYGLSQSLLRDPKQIE 226
Query: 359 AGKVTAMLLEMDQ 371
G+ A +E+DQ
Sbjct: 227 VGERNAAAVEIDQ 239
>gi|297693028|ref|XP_002823828.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX54
[Pongo abelii]
Length = 883
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 114/230 (49%), Gaps = 20/230 (8%)
Query: 116 QPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAV 175
+P+ +++ ++++K SG FQ +GL + K + K G VP+ IQ IP +
Sbjct: 78 EPDTREMVRAQNKKKKKSGG-------FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVI 130
Query: 176 LNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHM 235
L+GK VV + +GSG+T +LLP+ + L+ A RA++L T E A Q
Sbjct: 131 LDGKDVVAMARTGSGKTACFLLPMFERLKTHSA-----QTGARALILSPTRELALQTLKF 185
Query: 236 AKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 295
K + L +++ GG + + ++IATP ++ + N+ + YVV
Sbjct: 186 TKELGKFTGLKTALILGGDRMEDQFAALHENPDIIIATPGRLVHVAVEMNLKLQSVEYVV 245
Query: 296 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 345
DEAD LF+ GF ++ +I+ L G QT+L +A + ++L E
Sbjct: 246 FDEADRLFEMGFAEQLQEIIARLPG--------GHQTVLFSATLPKLLVE 287
>gi|262274927|ref|ZP_06052738.1| ATP-dependent RNA helicase SrmB [Grimontia hollisae CIP 101886]
gi|262221490|gb|EEY72804.1| ATP-dependent RNA helicase SrmB [Grimontia hollisae CIP 101886]
Length = 413
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 111/207 (53%), Gaps = 14/207 (6%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ +F EL L ++++A++ MG P+ IQ IP ++G+ ++ S+ +G+G+T A++LPL
Sbjct: 1 MRTFAELELDPQLLQALDDMGFERPTAIQAGVIPHGMDGRDILASAPTGTGKTAAFVLPL 60
Query: 200 VQMLRRDEALLP-MKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
+Q L P KP RA++L T E A Q A+ ++ L GG+S +
Sbjct: 61 LQHL----IDFPRQKPGPARALILTPTRELAIQIADQARALAKYTGLKIITITGGISYQE 116
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNP- 317
++ +++ATP +++++E C I +VLDEAD + D GFGP + ++ +
Sbjct: 117 HAEILGKTQDIVVATPGRLMEYVEAERFDCRAIESLVLDEADRMLDMGFGPAVDRLSSEC 176
Query: 318 -------LKDSALKSNG-QGFQTILVT 336
L + L+ G +GF+ L+T
Sbjct: 177 RWRKQSMLFSATLEGRGIEGFKKTLLT 203
>gi|325180097|emb|CCA14499.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
Length = 836
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 110/205 (53%), Gaps = 16/205 (7%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
FQ LGL + +AV MG VP+ IQ +P +L+GK VV + +GSG++ A+L+PL++
Sbjct: 28 FQHLGLSNPVYRAVMAMGYKVPTPIQRKSLPLILSGKDVVGMARTGSGKSAAFLIPLIEK 87
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS-SKALED 261
L+ + + R +VL T E A Q K ++ L S+ GG +
Sbjct: 88 LKEHSTRVGL-----RGLVLAPTRELALQTLQFTKGLAKYTSLRVSLIVGGEGMEQQFSA 142
Query: 262 VSNAPIGMLIATPSEVLQHIED-RNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 320
+++ P +L+ATP ++ H+++ + + + YVV DEAD LF+ GF ++ +IL+ +
Sbjct: 143 LASNP-DILVATPGRLMHHLQEIPDFNLKSVEYVVFDEADRLFEMGFADQLHEILSQMPP 201
Query: 321 SALKSNGQGFQTILVTAAIAEMLGE 345
+ QT+L +A + +L +
Sbjct: 202 NR--------QTLLFSATLPSVLAQ 218
>gi|124383654|ref|YP_001028341.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10229]
gi|124291674|gb|ABN00943.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10229]
Length = 488
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 93/177 (52%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL +++AV ++G P+ IQ IPAVL G ++ + +G+G+T + LP++Q
Sbjct: 2 SFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L A RA++L T E A Q + S +L S++ GGVS D
Sbjct: 62 RLHAFYAENRSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQID 121
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +++ATP +L H++ + + + +VLDEAD + D GF +I ++L L
Sbjct: 122 ALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKL 178
>gi|407068947|ref|ZP_11099785.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
cyclitrophicus ZF14]
Length = 443
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 94/181 (51%), Gaps = 11/181 (6%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F++LGL ++K ++ +EIQ IP + GK ++ SS +GSG+TLA++LP++
Sbjct: 3 FKDLGLDNRLLKNLKHYDFKKATEIQSKAIPVAIAGKDLLASSKTGSGKTLAFVLPMIHK 62
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGF----HMAKFISHCARLDSSMENGGVSSKA 258
+ +A PR ++L T E A Q + M +S+ A L EN KA
Sbjct: 63 ALKTKAF---SAKDPRGVILAPTRELAKQVYGELRSMLGGLSYEAALILGGENFNDQVKA 119
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
L ++ATP + H+E R++ D + ++LDEAD + D GF PE+ +I N
Sbjct: 120 LRKYPR----FIVATPGRLADHLEHRSLFLDGVETLILDEADRMLDLGFAPELRRIANAA 175
Query: 319 K 319
K
Sbjct: 176 K 176
>gi|383421509|gb|AFH33968.1| ATP-dependent RNA helicase DDX54 isoform 1 [Macaca mulatta]
Length = 884
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 114/230 (49%), Gaps = 20/230 (8%)
Query: 116 QPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAV 175
+P+ +++ ++++K SG FQ +GL + K + K G VP+ IQ IP +
Sbjct: 78 EPDTREMVRAQNKKKKKSGG-------FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVI 130
Query: 176 LNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHM 235
L+GK VV + +GSG+T +LLP+ + L+ A RA++L T E A Q
Sbjct: 131 LDGKDVVAMARTGSGKTACFLLPMFERLKTHSA-----QTGARALILSPTRELALQTLKF 185
Query: 236 AKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 295
K + L +++ GG + + ++IATP ++ + N+ + YVV
Sbjct: 186 TKELGKFTGLKTALILGGDRMEDQFAALHENPDIIIATPGRLVHVAVEMNLKLQSVEYVV 245
Query: 296 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 345
DEAD LF+ GF ++ +I+ L G QT+L +A + ++L E
Sbjct: 246 FDEADRLFEMGFAEQLQEIIARLPG--------GHQTVLFSATLPKLLVE 287
>gi|355683380|gb|AER97088.1| DEAD box polypeptide 54 [Mustela putorius furo]
Length = 877
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 117/234 (50%), Gaps = 28/234 (11%)
Query: 116 QPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAV 175
+P+ +++ ++++K SG FQ +GL + K + K G VP+ IQ IP +
Sbjct: 77 EPDTREMVRAQNKKKKKSGG-------FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVI 129
Query: 176 LNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHM 235
L+GK VV + +GSG+T +L+P+ + L+ A RA+VL T E A Q
Sbjct: 130 LDGKDVVAMARTGSGKTACFLIPMFERLKTRSA-----QTGARALVLSPTRELALQTMKF 184
Query: 236 AKFISHCARLDSSMENGGVSSKALEDVSNA----PIGMLIATPSEVLQHIEDRNVSCDDI 291
K + L +++ GG +ED A P ++IATP ++ + N+ I
Sbjct: 185 TKELGKFTGLRTALILGG---DKMEDQFAALHENP-DIIIATPGRLVHVAVEMNLKLQSI 240
Query: 292 RYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 345
YVV DEAD LF+ GF ++ +I+ L G QT+L +A + ++L E
Sbjct: 241 EYVVFDEADRLFEMGFAEQLQEIIGRLPG--------GHQTVLFSATLPKLLVE 286
>gi|344338388|ref|ZP_08769320.1| DEAD/DEAH box helicase domain protein [Thiocapsa marina 5811]
gi|343801670|gb|EGV19612.1| DEAD/DEAH box helicase domain protein [Thiocapsa marina 5811]
Length = 429
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 97/178 (54%), Gaps = 6/178 (3%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL+A++++AV P+ IQ IP +L G ++ + +G+G+T A++LPL+Q
Sbjct: 2 SFDSLGLQADLLRAVATQRYARPTPIQLQAIPEILAGHDLLAGAQTGTGKTAAFVLPLLQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSSKALE 260
L E P + HPRA++L T E A Q G + + H L S++ GGV +
Sbjct: 62 RL--SEKGHPQR--HPRALILTPTRELAAQVGERVHAYGLHLP-LRSAIVFGGVGMQPQV 116
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ + +LIATP +L H R V + +VLDEAD + D GF +I +I+ L
Sbjct: 117 NQLQRGVDVLIATPGRLLDHAGRRTVDLSRVEILVLDEADRMLDMGFIHDIRRIIQLL 174
>gi|380024659|ref|XP_003696110.1| PREDICTED: ATP-dependent RNA helicase abstrakt-like [Apis florea]
Length = 621
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 109/207 (52%), Gaps = 15/207 (7%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ ++ +E+ G+ P+ IQ GIP VL+G+ ++ + +GSG+TL ++LP+
Sbjct: 179 LKSFKEMKFHRGILNGLEQKGIVKPTPIQIQGIPTVLSGRDMIGIAFTGSGKTLVFVLPI 238
Query: 200 VQMLRRDEALLP-MKPMHPRAIVLCTTEESADQGFHMAKFISH------CARLDSSMENG 252
+ E +P ++ P +++C + E A Q + + + ++ C + S + G
Sbjct: 239 IMFCLEQEVAMPFVRNEGPYGLIICPSRELAKQTYDIIRHYTNSLRQAGCPEIRSCLAIG 298
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
GV +V N + +++ATP ++ ++ + V RY+ +DEAD + D GF ++
Sbjct: 299 GVPVSESLEVINKGVHIMVATPGRLMDMLDKKMVKLSVCRYLCMDEADRMIDMGFEEDVR 358
Query: 313 KILNPLKDSALKSNGQGFQTILVTAAI 339
I + + GQ QT+L +A +
Sbjct: 359 TIFSFFR-------GQR-QTLLFSATM 377
>gi|350415294|ref|XP_003490595.1| PREDICTED: ATP-dependent RNA helicase abstrakt-like [Bombus
impatiens]
Length = 625
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 109/207 (52%), Gaps = 15/207 (7%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ ++ +E+ G+ P+ IQ GIP VL+G+ ++ + +GSG+TL ++LP+
Sbjct: 183 LKSFKEMKFHRGILNGLEQKGIVKPTPIQVQGIPTVLSGRDMIGIAFTGSGKTLVFVLPI 242
Query: 200 VQMLRRDEALLP-MKPMHPRAIVLCTTEESADQGFHMAKFISH------CARLDSSMENG 252
+ E +P ++ P +++C + E A Q + + + ++ C + S + G
Sbjct: 243 IMFCLEQEVAMPFVRNEGPYGLIICPSRELAKQTYDIIRHYTNTLRQAGCPEIRSCLAIG 302
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
GV +V N + +++ATP ++ ++ + V RY+ +DEAD + D GF ++
Sbjct: 303 GVPVSESLEVINKGVHIMVATPGRLMDMLDKKMVKLSVCRYLCMDEADRMIDMGFEEDVR 362
Query: 313 KILNPLKDSALKSNGQGFQTILVTAAI 339
I + + GQ QT+L +A +
Sbjct: 363 TIFSFFR-------GQR-QTLLFSATM 381
>gi|254251488|ref|ZP_04944806.1| Superfamily I DNA and RNA helicase [Burkholderia dolosa AUO158]
gi|124894097|gb|EAY67977.1| Superfamily I DNA and RNA helicase [Burkholderia dolosa AUO158]
Length = 480
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 95/180 (52%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V SF+ LGL ++KAV ++G P+ IQ IPAVL G ++ + +G+G+T + LP
Sbjct: 2 VSMSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLP 61
Query: 199 LVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
++Q L A RA++L T E A Q + S +L S++ GGVS
Sbjct: 62 ILQRLHTFYAEHRNAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINP 121
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
D + +++ATP +L H++ + + + +VLDEAD + D GF +I ++L L
Sbjct: 122 QIDALKRGVDIVVATPGRLLDHMQQKTIDLSSLDILVLDEADRMLDMGFIHDIKRVLAKL 181
>gi|392556545|ref|ZP_10303682.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas undina NCIMB
2128]
Length = 408
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 96/182 (52%), Gaps = 11/182 (6%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F E L +++ A+ KMG P+ IQ IP L G+ ++ S+ +G+G+T A+L+P +Q
Sbjct: 3 FSEFDLDNKLLNAINKMGFETPTSIQQQAIPEALQGRDILASAPTGTGKTAAFLIPAIQY 62
Query: 203 L----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
L RRD P R +++ T E A Q + ++ L + GG++
Sbjct: 63 LMDFPRRD-------PGFARVLIMTPTRELAYQIHEQCELLAKQTHLKIGVVTGGINYGT 115
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+++ +LIATP +++++E N +++ ++LDEAD + D GF E+ +I +
Sbjct: 116 HKEIFENNNDILIATPGRLMEYLETENFHAENVEMLILDEADRMLDMGFRKEMLRICDEA 175
Query: 319 KD 320
K+
Sbjct: 176 KN 177
>gi|352100338|ref|ZP_08958087.1| DEAD/DEAH box helicase domain-containing protein [Halomonas sp.
HAL1]
gi|350601161|gb|EHA17212.1| DEAD/DEAH box helicase domain-containing protein [Halomonas sp.
HAL1]
Length = 421
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 102/177 (57%), Gaps = 5/177 (2%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F +LGL +++A+ ++G P+ IQ IPA+L+GK ++ ++ +G+G+T A++LPL++
Sbjct: 26 FAKLGLSPPLVQAISELGYQTPTPIQEQAIPAILSGKDLIATAQTGTGKTAAFVLPLLER 85
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSSKALED 261
L + RA++L T E A Q ++A++ H L S GGV ++A +
Sbjct: 86 FSNAGTL---RGKRIRALILVPTRELAVQVEANVAQYAKHT-HLTSMAMYGGVDTEAQKA 141
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
A + +L+ATP +L R + D+++ +VLDEAD + D GF +I KI+ L
Sbjct: 142 RLIAGVDILVATPGRLLDLAHQRALHFDELKAMVLDEADRMVDMGFADDIRKIIERL 198
>gi|225028959|ref|ZP_03718151.1| hypothetical protein EUBHAL_03251 [Eubacterium hallii DSM 3353]
gi|224953734|gb|EEG34943.1| DEAD/DEAH box helicase [Eubacterium hallii DSM 3353]
Length = 529
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 97/178 (54%), Gaps = 14/178 (7%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F EL +K E++KAV MG S IQ IP L+GK V+ + +G+G+T A+ +P++Q
Sbjct: 6 FTELDIKPEILKAVANMGFEAMSPIQAKAIPVELSGKDVIGQAQTGTGKTAAFGIPILQK 65
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEE----SADQGFHMAKFISHCARLDSSMENGGVSSKA 258
+ K P+AIVLC T E AD+ +AK++S L + G SK
Sbjct: 66 -------VDPKLKKPQAIVLCPTRELAIQVADEIRKLAKYMSSVKIL--PIYGGQEISKQ 116
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ + A + ++I TP ++ H+ + V D+I VVLDEAD + D GF +I ILN
Sbjct: 117 IRSLK-AGVQIIIGTPGRMMDHMRRKTVKFDNIHTVVLDEADEMLDMGFREDIETILN 173
>gi|451811659|ref|YP_007448114.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
crithidii TCC036E]
gi|451776817|gb|AGF47816.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
crithidii TCC036E]
Length = 456
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 104/194 (53%), Gaps = 9/194 (4%)
Query: 129 REKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSG 188
+EK N +++ F GL ++ ++ +G P+ IQ IP +LNG+ V+ ++ +G
Sbjct: 2 KEKRENKNKQIL--FDSFGLDQLLLNSINSIGYDTPTAIQEKAIPFILNGRDVLGAAQTG 59
Query: 189 SGRTLAYLLPLVQML--RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLD 246
+G+T A++LP++ + + + P + + R ++L T E A+Q + S L
Sbjct: 60 TGKTAAFVLPIINKILPYANSSTSPARHL-LRVLILVPTRELANQVYDSVVIYSKNTNLR 118
Query: 247 SSMENGGVSSKALEDVSNAPIG--MLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 304
S + GG E+ N +G +L+ATP ++ HIE N+ +I VLDEAD + D
Sbjct: 119 SVVLFGGADHYNQEN--NLKLGCEILVATPGRLIAHIEQGNLHLQNIEIFVLDEADRMLD 176
Query: 305 RGFGPEISKILNPL 318
GF P+I KI++ L
Sbjct: 177 MGFMPDIDKIISKL 190
>gi|441629962|ref|XP_003274471.2| PREDICTED: ATP-dependent RNA helicase DDX54 [Nomascus leucogenys]
Length = 862
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 113/230 (49%), Gaps = 20/230 (8%)
Query: 116 QPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAV 175
+P+ +++ ++++K SG FQ +GL + K + K G VP+ IQ IP +
Sbjct: 62 EPDTREMVRAQNKKKKKSGG-------FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVI 114
Query: 176 LNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHM 235
L+GK VV + +GSG+T +LLP+ + L+ A RA++L T E A Q
Sbjct: 115 LDGKDVVAMARTGSGKTACFLLPMFERLKTHSA-----QTGARALILSPTRELALQTLKF 169
Query: 236 AKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 295
K + L +++ GG + + +IATP ++ + N+ + YVV
Sbjct: 170 TKELGKFTGLKTALILGGDRMEDQFAALHENPDTIIATPGRLVHVAVEMNLKLQSVEYVV 229
Query: 296 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 345
DEAD LF+ GF ++ +I+ L G QT+L +A + ++L E
Sbjct: 230 FDEADRLFEMGFAEQLQEIITRLPG--------GHQTVLFSATLPKLLVE 271
>gi|400292266|ref|ZP_10794224.1| DEAD/DEAH box helicase [Actinomyces naeslundii str. Howell 279]
gi|399902636|gb|EJN85433.1| DEAD/DEAH box helicase [Actinomyces naeslundii str. Howell 279]
Length = 226
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 102/192 (53%), Gaps = 5/192 (2%)
Query: 126 ASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSS 185
AS R S + A ++F LG+ +++ ++ G P IQ +P L G+ V+
Sbjct: 8 ASHRFASGKTPAAGEATFASLGVDSDLAADLDARGFTAPFPIQAATLPDTLAGRDVLGRG 67
Query: 186 GSGSGRTLAYLLPLVQML-RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 244
+GSG+TLA+ LPLVQ L ++D+A +P HP +VL T E A Q + + ++
Sbjct: 68 RTGSGKTLAFSLPLVQRLAQQDKA----RPGHPIGLVLAPTRELALQIAEVIEPLARVVD 123
Query: 245 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 304
+D + GGVS+K E + +++A P +L + VS D++ VLDEAD + D
Sbjct: 124 MDVTTIFGGVSAKPQEKALKDGVDVVVACPGRLLDLMGQGLVSLDEVEITVLDEADHMAD 183
Query: 305 RGFGPEISKILN 316
GF P + +IL
Sbjct: 184 LGFLPNVRRILR 195
>gi|241888805|ref|ZP_04776111.1| ATP-dependent RNA helicase DeaD [Gemella haemolysans ATCC 10379]
gi|241864481|gb|EER68857.1| ATP-dependent RNA helicase DeaD [Gemella haemolysans ATCC 10379]
Length = 486
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 113/214 (52%), Gaps = 18/214 (8%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+++F+ELG+ E ++++ M P+ IQ IP VL+G ++ + +GSG+T A+ +PL
Sbjct: 1 MTTFEELGVSQETVQSLTNMNFISPTGIQTETIPYVLSGVDILAQAQTGSGKTGAFGIPL 60
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS-SKA 258
V +RR++ L ++++L T E A Q + +S L S+ GG S +
Sbjct: 61 VDTVRRNDQL--------QSLILAPTRELAQQVGEQLRLMSRAKGLKVSIVFGGTSIERQ 112
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
++D+ P +++ TP V+ HI R + + + ++VLDEAD + + GF ++ IL+ +
Sbjct: 113 IQDLKKRP-QIIVGTPGRVIDHINRRTIKLETLTHLVLDEADEMLNMGFIEDVRFILSKI 171
Query: 319 KDSALKSNGQGFQTILVTAAIAEMLGEQLSSLME 352
QT+L +A + + + E M+
Sbjct: 172 TSR--------HQTLLFSATMPKTIMELSKEFMK 197
>gi|424778219|ref|ZP_18205170.1| ATP-dependent RNA helicase [Alcaligenes sp. HPC1271]
gi|422887047|gb|EKU29458.1| ATP-dependent RNA helicase [Alcaligenes sp. HPC1271]
Length = 487
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 89/174 (51%), Gaps = 1/174 (0%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F L L +++AV G P+ IQ IP V+ G ++ ++ +G+G+T + LP++
Sbjct: 6 TFASLELAEPLLRAVTDAGYTHPTPIQAQAIPKVIEGGDLLAAAQTGTGKTAGFTLPILH 65
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L + KP PRA++L T E A Q + S RL S + GGV+
Sbjct: 66 RLL-NNPQQNRKPGRPRALILAPTRELAAQVEESVRLYSQHTRLRSMVMFGGVNINPQFH 124
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
P+ +L+ATP +L H+ R V + +VLDEAD + D GF +I KI+
Sbjct: 125 ALRKPLDILVATPGRLLDHVRQRTVDLTGVEILVLDEADRMLDMGFIRDIRKII 178
>gi|300796770|ref|NP_001178477.1| ATP-dependent RNA helicase DDX54 [Rattus norvegicus]
Length = 874
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 114/230 (49%), Gaps = 20/230 (8%)
Query: 116 QPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAV 175
+P+ +++ ++++K SG FQ +GL + K + K G VP+ IQ IP +
Sbjct: 77 EPDTREMVRAQNKKKKKSGG-------FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVI 129
Query: 176 LNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHM 235
L+GK VV + +GSG+T +LLP+ + L+ A RA++L T E A Q
Sbjct: 130 LDGKDVVAMARTGSGKTACFLLPMFERLKARSA-----QTGARALILSPTRELALQTMKF 184
Query: 236 AKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 295
K + L +++ GG + + ++IATP ++ + N+ + YVV
Sbjct: 185 TKELGKFTGLKTALILGGDKMEDQFAALHENPDIIIATPGRLVHVAVEMNLKLQSVEYVV 244
Query: 296 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 345
DEAD LF+ GF ++ +I+ L G QT+L +A + ++L E
Sbjct: 245 FDEADRLFEMGFAEQLQEIIGRLPG--------GHQTVLFSATLPKLLVE 286
>gi|330947853|ref|XP_003306985.1| hypothetical protein PTT_20304 [Pyrenophora teres f. teres 0-1]
gi|311315219|gb|EFQ84923.1| hypothetical protein PTT_20304 [Pyrenophora teres f. teres 0-1]
Length = 893
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 117/222 (52%), Gaps = 16/222 (7%)
Query: 126 ASEREKSS-GSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLS 184
AS R+ S+ G + + FQ +GL A ++KA+ + G +P+ IQ +P +L G+ VV
Sbjct: 61 ASNRKASNIGKSVKKGGGFQAMGLNAALLKAIAQKGFKIPTPIQRKAVPLMLQGEDVVGM 120
Query: 185 SGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 244
+ +GSG+T A+++P++Q L+ A + R I++ + E A Q + K +
Sbjct: 121 ARTGSGKTAAFVIPMIQKLKAHSA-----KVGARGIIMSPSRELALQTLKVVKELGRGTD 175
Query: 245 LDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 303
L + + GG S + ++ P ++IATP L + + +RY+V DEAD LF
Sbjct: 176 LRTILLVGGDSLEEQFSSMTTNP-DIIIATPGRFLHLKVEMGLDLSSVRYIVFDEADRLF 234
Query: 304 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 345
+ GF ++S+IL+ L S QT+L +A + + L E
Sbjct: 235 EMGFAAQLSEILHALPASR--------QTLLFSATLPKSLVE 268
>gi|325983695|ref|YP_004296097.1| DEAD/DEAH box helicase domain-containing protein [Nitrosomonas sp.
AL212]
gi|325533214|gb|ADZ27935.1| DEAD/DEAH box helicase domain protein [Nitrosomonas sp. AL212]
Length = 445
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 77/239 (32%), Positives = 118/239 (49%), Gaps = 18/239 (7%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF GL E+I+AV + G VP+ IQ IPAVL G ++ + +G+G+T + LP++
Sbjct: 2 SFATFGLSDEIIRAVTERGYTVPTPIQKQAIPAVLTGADLLAGAQTGTGKTAGFTLPILH 61
Query: 202 MLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE 260
L P P RA++L T E A Q + +L S M GGV+
Sbjct: 62 RLSDKSVKGPSTGRPPIRALILVPTRELAAQVEESVRDYGKYLKLSSMMMIGGVNINPQI 121
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 320
+ + +L+ATP +L H++ + +S I +VLDEAD + D GF +I KIL L
Sbjct: 122 TRLKSRVDILVATPGRLLDHVQQKTLSLSQIEILVLDEADRMLDMGFIRDIKKILALLPK 181
Query: 321 SALKSNGQGFQTILVTA-------AIAEMLGEQLSSLMECLERDN-AGKVTAMLLEMDQ 371
Q +L +A A+A+ L Q +L+E R+ A KVT ++ +D+
Sbjct: 182 QR--------QNLLFSATFSDEIRALADSLLNQ-PALIEAARRNAIADKVTHVVHPVDR 231
>gi|402887738|ref|XP_003907240.1| PREDICTED: ATP-dependent RNA helicase DDX54 [Papio anubis]
Length = 883
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 114/230 (49%), Gaps = 20/230 (8%)
Query: 116 QPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAV 175
+P+ +++ ++++K SG FQ +GL + K + K G VP+ IQ IP +
Sbjct: 78 EPDTREMVRAQNKKKKKSGG-------FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVI 130
Query: 176 LNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHM 235
L+GK VV + +GSG+T +LLP+ + L+ A RA++L T E A Q
Sbjct: 131 LDGKDVVAMARTGSGKTACFLLPMFERLKTHSA-----QTGARALILSPTRELALQTLKF 185
Query: 236 AKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 295
K + L +++ GG + + ++IATP ++ + N+ + YVV
Sbjct: 186 TKELGKFTGLKTALILGGDRMEDQFAALHENPDIIIATPGRLVHVAVEMNLKLQSVEYVV 245
Query: 296 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 345
DEAD LF+ GF ++ +I+ L G QT+L +A + ++L E
Sbjct: 246 FDEADRLFEMGFAEQLQEIIARLPG--------GHQTVLFSATLPKLLVE 287
>gi|340386524|ref|XP_003391758.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 39-like, partial
[Amphimedon queenslandica]
Length = 270
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 124/234 (52%), Gaps = 7/234 (2%)
Query: 170 VGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPM--KPMHPRAIVLCTTEE 227
+ IP + G +V+ ++ +GSG+T+AY+ PL+ L+ +E L + + PRA+V+ + +
Sbjct: 2 LAIPHITKGSNVLCAAETGSGKTIAYMAPLINRLKDEEEQLGVITRFKKPRALVILPSRD 61
Query: 228 SADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVS 287
A+Q +AK SH ++ GG + +++ P+ +LIATP +L+ + +S
Sbjct: 62 LANQVLSVAKLFSHVVKIRIVAAIGGKKKRFIKEALTKPVDVLIATPDSLLKLKQQDRIS 121
Query: 288 CDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNG-----QGFQTILVTAAIAEM 342
D+ ++VLDEAD+LFD+ F +L +K +K +G Q +V+A I
Sbjct: 122 FSDVSHLVLDEADSLFDQSFEDTTFNLLKMMKIREVKPKNYSDMREGAQVTVVSATITNR 181
Query: 343 LGEQLSSLMECLERDNAGKVTAMLLEMDQAEVFDLTESQDALKKKVVEAMDSLH 396
+ L+ + +++ + ++ +L ++Q + + E + L KV+E + +
Sbjct: 182 MLTSLTEKIPNIKKITSKQLHKILPNVEQKFIKVIAEHKAELLLKVLEGYSNTY 235
>gi|328773329|gb|EGF83366.1| hypothetical protein BATDEDRAFT_8371 [Batrachochytrium
dendrobatidis JAM81]
Length = 460
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 85/285 (29%), Positives = 145/285 (50%), Gaps = 35/285 (12%)
Query: 117 PEQQQLSNIASEREKSSGSNAEVVSS--FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPA 174
PE + + + + ++S+ A+V S F+ +GL+ +I +++ + + PSEIQ IP
Sbjct: 7 PENELNAQVEKQTQQSTLKQAQVSESATFESIGLRPWLIGSLKSISIRHPSEIQQACIPH 66
Query: 175 VLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFH 234
+LNG+ ++ + +GSG+T A+ LP++Q L D P A+VL E A Q
Sbjct: 67 ILNGRDIIGGAKTGSGKTAAFALPILQKLSED-------PYGVFALVLTPARELAFQIAE 119
Query: 235 MAKFISHCARLDSSMENGGVS--SKALEDVSNAPIGMLIATPSEVLQHIEDRN--VSCDD 290
+ + L S+ GG+ S+ALE +S P ++IATP ++ HI + +
Sbjct: 120 QFRVLGTGINLKLSVVVGGMDMMSQALE-LSQKP-HVIIATPGRLVDHIRSSSNAIHFKR 177
Query: 291 IRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE-QLSS 349
IR++V+DEAD L D F ++ IL+ L Q QT+L TA + + + E Q+SS
Sbjct: 178 IRFLVMDEADRLLDDTFSDDLEGILSQLP--------QKRQTLLFTATMTDEIKELQMSS 229
Query: 350 -----LMECLERDNAGKVTAMLLEMDQAEVFDLTESQDALKKKVV 389
+ EC ER + + ++DQ + + +DA +V
Sbjct: 230 KTLPFVYECAERYSTVE------KLDQQYILVSSNVRDAYLAHIV 268
>gi|237810939|ref|YP_002895390.1| ATP-dependent RNA helicase RhlE [Burkholderia pseudomallei MSHR346]
gi|237503374|gb|ACQ95692.1| ATP-dependent RNA helicase RhlE [Burkholderia pseudomallei MSHR346]
Length = 488
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 93/177 (52%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL +++AV ++G P+ IQ IPAVL G ++ + +G+G+T + LP++Q
Sbjct: 2 SFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L A RA++L T E A Q + S +L S++ GGVS D
Sbjct: 62 RLHAFYAENRSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQID 121
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +++ATP +L H++ + + + +VLDEAD + D GF +I ++L L
Sbjct: 122 ALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKL 178
>gi|109098826|ref|XP_001111246.1| PREDICTED: ATP-dependent RNA helicase DDX54 isoform 2 [Macaca
mulatta]
Length = 883
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 114/230 (49%), Gaps = 20/230 (8%)
Query: 116 QPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAV 175
+P+ +++ ++++K SG FQ +GL + K + K G VP+ IQ IP +
Sbjct: 78 EPDTREMVRAQNKKKKKSGG-------FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVI 130
Query: 176 LNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHM 235
L+GK VV + +GSG+T +LLP+ + L+ A RA++L T E A Q
Sbjct: 131 LDGKDVVAMARTGSGKTACFLLPMFERLKTHSA-----QTGARALILSPTRELALQTLKF 185
Query: 236 AKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 295
K + L +++ GG + + ++IATP ++ + N+ + YVV
Sbjct: 186 TKELGKFTGLKTALILGGDRMEDQFAALHENPDIIIATPGRLVHVAVEMNLKLQSVEYVV 245
Query: 296 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 345
DEAD LF+ GF ++ +I+ L G QT+L +A + ++L E
Sbjct: 246 FDEADRLFEMGFAEQLQEIIARLPG--------GHQTVLFSATLPKLLVE 287
>gi|421081610|ref|ZP_15542520.1| ATP-dependent RNA helicase RhlE-like protein [Pectobacterium
wasabiae CFBP 3304]
gi|401703699|gb|EJS93912.1| ATP-dependent RNA helicase RhlE-like protein [Pectobacterium
wasabiae CFBP 3304]
Length = 480
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 94/178 (52%), Gaps = 1/178 (0%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL A++++A+E+ G P+ +Q IP VL G+ ++ S+ +G+G+T + LPL+Q
Sbjct: 2 SFDSLGLSADILRAIEEQGYRDPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 202 MLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE 260
+L EA K P RA++L T E A Q K S L S + GGVS
Sbjct: 62 LLTSREAQHKGKGRRPVRALILTPTRELAAQIDENVKAYSKYLPLRSLVVFGGVSINPQM 121
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +L+ATP +L R V I +VLDEAD + D GF +I ++L L
Sbjct: 122 MKLRGGVDILVATPGRLLDLEHQRAVDLSQIEILVLDEADRMLDMGFIHDIRRVLAKL 179
>gi|195480298|ref|XP_002101215.1| GE17497 [Drosophila yakuba]
gi|194188739|gb|EDX02323.1| GE17497 [Drosophila yakuba]
Length = 962
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 107/201 (53%), Gaps = 6/201 (2%)
Query: 119 QQQLSNIASEREKSSGSN--AEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVL 176
+QQ+++I E E + N V SF+E L A +I+ +++ G P+ IQ G P L
Sbjct: 215 EQQVADIRRELEITVSGNELPHPVVSFEESSLPAHVIEEMKRQGFTKPTAIQSQGWPIAL 274
Query: 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMA 236
+G+ +V + +GSG+TLAY+LP + + +L + P A+VL T E A Q +
Sbjct: 275 SGRDLVGIAQTGSGKTLAYMLPAIVHIGNQPPIL--RGEGPIALVLAPTRELAQQIQSVV 332
Query: 237 KFISHCAR--LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYV 294
+ H + + + GG S + + ++IATP ++ +E+RN + Y+
Sbjct: 333 RDYGHLCKPEIRHTCIFGGSSKVPQARDLDRGVEVIIATPGRLIDFLENRNTNLQRCTYL 392
Query: 295 VLDEADTLFDRGFGPEISKIL 315
VLDEAD + D GF P+I KI+
Sbjct: 393 VLDEADRMLDMGFEPQIRKII 413
>gi|270014204|gb|EFA10652.1| hypothetical protein TcasGA2_TC016289 [Tribolium castaneum]
Length = 619
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 108/207 (52%), Gaps = 15/207 (7%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ +F+E+ L +I +++ + P+ IQ GIP VL+G+ ++ + +GSG+TL ++LPL
Sbjct: 177 LKTFREMKLHEGIISGLKEKKIKKPTPIQIQGIPTVLSGRDMIGIAFTGSGKTLVFVLPL 236
Query: 200 VQMLRRDEALLP-MKPMHPRAIVLCTTEESADQGFHMAKFISHCAR------LDSSMENG 252
+ E LP +K P +++C + E A Q F + + + R + +S+ G
Sbjct: 237 IMFCLEQEVKLPFIKNEGPYGLIICPSRELAKQTFDIIQHFCNSLRKHGMPEIRTSLAIG 296
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
GV DV + +++ATP ++ +E + V RY+ +DEAD + D GF ++
Sbjct: 297 GVPVSEAVDVIQRGVHIMVATPGRLMDMLEKKIVKLSVCRYLCMDEADRMIDLGFEEDVR 356
Query: 313 KILNPLKDSALKSNGQGFQTILVTAAI 339
I + NGQ QT+L +A +
Sbjct: 357 TIFSYF-------NGQR-QTLLFSATM 375
>gi|380015035|ref|XP_003691517.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
DDX27-like [Apis florea]
Length = 710
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 104/209 (49%), Gaps = 14/209 (6%)
Query: 135 SNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLA 194
SN E ++F ++ L ++KA+ M P+ IQ IP L G+ + + +G+G+T A
Sbjct: 150 SNIESHATFHQMNLSRPLLKAITAMNFVHPTPIQAATIPVALMGRDICGCAATGTGKTAA 209
Query: 195 YLLPLVQMLRRDEALLPMK-PMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGG 253
Y+LP ++ L P+ P R +VL T E Q + + K +S ++ + GG
Sbjct: 210 YMLPTLERL----LYRPLDGPAISRVLVLVPTRELGVQVYQVTKQLSQFTTIEVGLSVGG 265
Query: 254 VSSKALEDVSNAPIGMLIATPSEVLQHIEDR-NVSCDDIRYVVLDEADTLFDRGFGPEIS 312
+ KA E V ++IATP ++ H+++ S D I ++LDEAD + D F ++
Sbjct: 266 LDVKAQEAVLRRSPDIVIATPGRLIDHLKNTPTFSLDSIEVLILDEADRMLDEYFAEQMK 325
Query: 313 KILNPLKDSALKSNGQGFQTILVTAAIAE 341
I +K + QTIL +A + E
Sbjct: 326 YI--------VKQCSRSRQTILFSATMTE 346
>gi|291614701|ref|YP_003524858.1| DEAD/DEAH box helicase domain protein [Sideroxydans lithotrophicus
ES-1]
gi|291584813|gb|ADE12471.1| DEAD/DEAH box helicase domain protein [Sideroxydans lithotrophicus
ES-1]
Length = 450
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 91/175 (52%), Gaps = 1/175 (0%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF +L L ++KA+ + G P+ IQ IP L G ++ + +G+G+T A+ LP++Q
Sbjct: 5 SFVDLKLAPPILKALTEAGYVTPTPIQAQAIPLALEGHDLMAGAQTGTGKTAAFALPMLQ 64
Query: 202 MLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE 260
L + HP RA++L T E A Q K + L S + GGV K
Sbjct: 65 KLLPHASASTSPAKHPVRALILVPTRELAVQVEESVKAYAKHTNLRSLVVYGGVDIKTQT 124
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
+ +L+ATP +L HIE + V + ++ +VLDEAD + D GF P + +IL
Sbjct: 125 PHLKTGVEILVATPGRLLDHIEQKTVLLNQVQMLVLDEADRMLDMGFMPALKRIL 179
>gi|392393902|ref|YP_006430504.1| DNA/RNA helicase [Desulfitobacterium dehalogenans ATCC 51507]
gi|390524980|gb|AFM00711.1| DNA/RNA helicase, superfamily II [Desulfitobacterium dehalogenans
ATCC 51507]
Length = 398
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 122/219 (55%), Gaps = 21/219 (9%)
Query: 138 EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLL 197
E SF++LG+ AE+++A+EK G+ P+EIQ IP +L+ + V S +GSG+TLAYLL
Sbjct: 2 ETSHSFKQLGIHAELLEALEKEGIAQPTEIQKATIPLILSNRDVAGQSETGSGKTLAYLL 61
Query: 198 PLVQ---MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGV 254
P+ Q +L+R+ L + P H A+ + +S Q H+A I+ A + G V
Sbjct: 62 PIFQKIDLLKRENQALILTPTHELALQVHRQIQSLSQ--HLAATITSAAII------GNV 113
Query: 255 S-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISK 313
+ ++ +E + P +++ + +L+ I+ R +S ++ +VLDEAD L D K
Sbjct: 114 NITRQIEKLKEKP-HIIVGSAGRILELIQKRKISPQSLKTIVLDEADQLLD-------EK 165
Query: 314 ILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLME 352
+ +K + LK+ + Q +L +A +++ E+ S ++
Sbjct: 166 NIQTVK-AVLKTTYKDSQILLFSATLSQETIERASGFLK 203
>gi|330447422|ref|ZP_08311071.1| srmB, DEAD-box RNA helicase [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328491613|dbj|GAA05568.1| srmB, DEAD-box RNA helicase [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 411
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 96/176 (54%), Gaps = 5/176 (2%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ F EL L +E+++A+E++G P+ +Q IP L+GK V+ S+ +G+G+T A+LLP+
Sbjct: 1 MKDFSELELDSELLQAIEEIGYSRPTVVQAQAIPHALDGKDVMASAPTGTGKTAAFLLPM 60
Query: 200 VQMLRRDEALLPM-KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
+Q L P KP R +VL T E A Q A+ ++ L GG+S
Sbjct: 61 IQHLLD----FPRKKPGPARVLVLTPTRELAIQVADQARTLAKHTMLKVFTITGGISYDE 116
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
++ +++ATP ++++IE C I ++LDEAD + D GFG + ++
Sbjct: 117 HAELLGKTQDIVVATPGRLMEYIEAEKFDCRAIECLILDEADRMLDMGFGKVVERL 172
>gi|271500987|ref|YP_003334012.1| DEAD/DEAH box helicase domain-containing protein [Dickeya dadantii
Ech586]
gi|270344542|gb|ACZ77307.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech586]
Length = 452
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 96/175 (54%), Gaps = 3/175 (1%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SFQ LGL A++++AVE+ G P+ +Q IP VL G+ ++ S+ +G+G+T + LPL+Q
Sbjct: 2 SFQSLGLSADILRAVEEQGYREPTPVQSQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 202 MLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE 260
+L +E+ + K P RA++L T E A Q + S RL S + GGVS
Sbjct: 62 LL--NESPVLAKGRRPVRALILTPTRELAAQIGENVQAYSKYLRLRSLVVFGGVSINPQM 119
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
+ +LIATP +L V + +VLDEAD + D GF +I ++L
Sbjct: 120 MKLRGGVDILIATPGRLLDLEHQNAVDLSQVEILVLDEADRMLDMGFIHDIRRVL 174
>gi|53718338|ref|YP_107324.1| ATP-dependent RNA helicase 1 [Burkholderia pseudomallei K96243]
gi|53724700|ref|YP_102079.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei ATCC 23344]
gi|67641488|ref|ZP_00440266.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei GB8 horse 4]
gi|126450332|ref|YP_001081986.1| ATP-dependent RNA helicase rhlE [Burkholderia mallei NCTC 10247]
gi|134279667|ref|ZP_01766379.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
305]
gi|226196769|ref|ZP_03792349.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
Pakistan 9]
gi|386862863|ref|YP_006275812.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1026b]
gi|418392348|ref|ZP_12968130.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 354a]
gi|418537531|ref|ZP_13103166.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1026a]
gi|418541949|ref|ZP_13107410.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1258a]
gi|418548277|ref|ZP_13113396.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1258b]
gi|418554393|ref|ZP_13119180.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 354e]
gi|52208752|emb|CAH34688.1| putative ATP-dependent RNA helicase 1 [Burkholderia pseudomallei
K96243]
gi|52428123|gb|AAU48716.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei ATCC 23344]
gi|126243202|gb|ABO06295.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10247]
gi|134248867|gb|EBA48949.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
305]
gi|225931300|gb|EEH27307.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
Pakistan 9]
gi|238522432|gb|EEP85876.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei GB8 horse 4]
gi|385349447|gb|EIF56014.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1026a]
gi|385356616|gb|EIF62709.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1258a]
gi|385358294|gb|EIF64306.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1258b]
gi|385370257|gb|EIF75512.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 354e]
gi|385375424|gb|EIF80195.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 354a]
gi|385659991|gb|AFI67414.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1026b]
Length = 485
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 93/177 (52%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL +++AV ++G P+ IQ IPAVL G ++ + +G+G+T + LP++Q
Sbjct: 2 SFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L A RA++L T E A Q + S +L S++ GGVS D
Sbjct: 62 RLHAFYAENRSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQID 121
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +++ATP +L H++ + + + +VLDEAD + D GF +I ++L L
Sbjct: 122 ALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKL 178
>gi|4104820|gb|AAD02177.1| RNA helicase [Anabaena variabilis]
Length = 425
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 99/182 (54%), Gaps = 10/182 (5%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL E+I AV ++G P+ IQ IPAVL+G+ ++ + +G+G+T ++ LPL+
Sbjct: 2 SFSHLGLSNEIINAVTELGYTKPTPIQMQSIPAVLSGRDLLRGAQTGTGKTASFTLPLLH 61
Query: 202 -----MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSS 256
+L+ + L + RA++L T E A Q + +L+S + GGVS
Sbjct: 62 YYPKIVLKALQCFLTI-----RALILTPTRELAAQVESSVRDYGKYLKLNSMVMFGGVSI 116
Query: 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ + +L+ATP +L H++ V+ I +VLDEAD + D GF +I +IL+
Sbjct: 117 NPQKQRLKGRVDILVATPGRLLDHVQQGTVNLSQIEILVLDEADRMLDMGFIRDIRRILS 176
Query: 317 PL 318
L
Sbjct: 177 LL 178
>gi|239617313|ref|YP_002940635.1| DEAD/DEAH box helicase domain protein [Kosmotoga olearia TBF
19.5.1]
gi|239506144|gb|ACR79631.1| DEAD/DEAH box helicase domain protein [Kosmotoga olearia TBF
19.5.1]
Length = 524
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 97/176 (55%), Gaps = 8/176 (4%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F E+GL +M+ ++EK+G P+ IQ IP +LNG+ ++ + +G+G+T A+ +PL++
Sbjct: 4 NFSEMGLSRKMLNSIEKVGFVEPTPIQSKAIPVILNGRDIIGQAHTGTGKTAAFGIPLLE 63
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSSKALE 260
M L +A++LC T E A Q +A S+ ++ GG S +
Sbjct: 64 M-------LDYSSKKVQALILCPTRELAVQVAREIAALASNRKEIEVLAIYGGQSIERQI 116
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ I +++ TP ++ H+ + + DD ++VVLDEAD + + GF +I IL+
Sbjct: 117 NTLKKGIQVVVGTPGRIMDHMRRKTLKLDDTKFVVLDEADEMLNMGFLEDIRYILS 172
>gi|189189808|ref|XP_001931243.1| ATP-dependent RNA helicase DBP10 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187972849|gb|EDU40348.1| ATP-dependent RNA helicase DBP10 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 892
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 117/222 (52%), Gaps = 16/222 (7%)
Query: 126 ASEREKSS-GSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLS 184
AS R+ S+ G + + FQ +GL A ++KA+ + G +P+ IQ +P +L G+ VV
Sbjct: 61 ASNRKASNVGKSVKKGGGFQAMGLNAALLKAIAQKGFKIPTPIQRKAVPLMLQGEDVVGM 120
Query: 185 SGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 244
+ +GSG+T A+++P++Q L+ A + R I++ + E A Q + K +
Sbjct: 121 ARTGSGKTAAFVIPMIQKLKAHSA-----KVGARGIIMSPSRELALQTLKVVKELGRGTD 175
Query: 245 LDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 303
L + + GG S + ++ P ++IATP L + + +RY+V DEAD LF
Sbjct: 176 LRTILLVGGDSLEEQFSSMTTNP-DIIIATPGRFLHLKVEMGLDLSSVRYIVFDEADRLF 234
Query: 304 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 345
+ GF ++S+IL+ L S QT+L +A + + L E
Sbjct: 235 EMGFAAQLSEILHALPASR--------QTLLFSATLPKSLVE 268
>gi|167718208|ref|ZP_02401444.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
DM98]
Length = 434
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 93/177 (52%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL +++AV ++G P+ IQ IPAVL G ++ + +G+G+T + LP++Q
Sbjct: 2 SFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L A RA++L T E A Q + S +L S++ GGVS D
Sbjct: 62 RLHAFYAENRSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQID 121
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +++ATP +L H++ + + + +VLDEAD + D GF +I ++L L
Sbjct: 122 ALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKL 178
>gi|347758155|ref|YP_004865717.1| DEAD/DEAH box helicase [Micavibrio aeruginosavorus ARL-13]
gi|347590673|gb|AEP09715.1| DEAD/DEAH box helicase family protein [Micavibrio aeruginosavorus
ARL-13]
Length = 489
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 105/189 (55%), Gaps = 7/189 (3%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+++F++LGL E++KAVE+ G P+ IQ IP VL + +V + +G+G+T ++ LP+
Sbjct: 1 MTTFEDLGLSPEVLKAVEECGYTTPTPIQEQAIPVVLMMRDIVGLAQTGTGKTASFTLPM 60
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
+++L A K PR++VL T E A Q L ++ GG S
Sbjct: 61 IEILSGGRA----KARMPRSLVLVPTRELAAQVAENFDTYGKYNALTKALLVGGESMGDQ 116
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN--- 316
+ + + +LIATP +L E N+ +DI+ +V+DEAD + D GF P+I KI++
Sbjct: 117 IKLLDRGVDVLIATPGRLLDLFERGNILLNDIKVLVIDEADRMLDMGFIPDIEKIVSKIP 176
Query: 317 PLKDSALKS 325
P++ + L S
Sbjct: 177 PMRQTLLFS 185
>gi|327265659|ref|XP_003217625.1| PREDICTED: probable ATP-dependent RNA helicase DDX41-like [Anolis
carolinensis]
Length = 672
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 108/207 (52%), Gaps = 15/207 (7%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 230 LKSFKEMKFPAAILRGLKKKGIQQPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 289
Query: 200 VQMLRRDEALLPM-KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDS------SMENG 252
+ E LP K P +++C + E A Q + ++ D ++ G
Sbjct: 290 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLHEDGMPSLRCALCIG 349
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
G+S K + + M++ATP ++ ++ + VS D RY+ LDEAD + D GF +I
Sbjct: 350 GMSVKEQMETIKHGVHMMVATPGRLMDLLQKKMVSLDVCRYLALDEADRMIDMGFEGDIR 409
Query: 313 KILNPLKDSALKSNGQGFQTILVTAAI 339
I + K GQ QT+L +A +
Sbjct: 410 TIFSYFK-------GQR-QTLLFSATM 428
>gi|194214292|ref|XP_001915035.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase
DDX54-like [Equus caballus]
Length = 860
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 117/234 (50%), Gaps = 28/234 (11%)
Query: 116 QPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAV 175
+P+ +++ ++++K SG FQ +GL + + V K G VP+ IQ IP +
Sbjct: 58 EPDTREMVRAQNKKKKKSGG-------FQSMGLSYPVFRGVMKKGYKVPTPIQRKTIPVI 110
Query: 176 LNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHM 235
L+GK VV + +GSG+T +L+P+ + L+ A RA+VL T E A Q
Sbjct: 111 LDGKDVVAMARTGSGKTACFLIPMFERLKTHSA-----QTGARALVLSPTRELALQTMKF 165
Query: 236 AKFISHCARLDSSMENGGVSSKALEDVSNA----PIGMLIATPSEVLQHIEDRNVSCDDI 291
K + L +++ GG +ED A P ++IATP ++ + N+ +
Sbjct: 166 TKELGKFTGLKTALILGG---DKMEDQFAALHENP-DIIIATPGRLVHVAVEMNLKLQSV 221
Query: 292 RYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 345
YVV DEAD LF+ GF ++ +I+ L G QT+L +A + ++L E
Sbjct: 222 EYVVFDEADRLFEMGFAEQLQEIIGRLPG--------GHQTVLFSATLPKLLVE 267
>gi|431914219|gb|ELK15477.1| ATP-dependent RNA helicase DDX54 [Pteropus alecto]
Length = 942
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 119/234 (50%), Gaps = 28/234 (11%)
Query: 116 QPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAV 175
+P+ +++ ++++K SG FQ +GL + + V K G VP+ IQ IP +
Sbjct: 78 EPDTREMVRAQNKKKKKSGG-------FQSMGLSYPVFRGVMKKGYKVPTPIQRKTIPVI 130
Query: 176 LNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHM 235
L+GK VV + +GSG+T +L+P+ + L+ A RA++L T E A Q
Sbjct: 131 LDGKDVVAMARTGSGKTACFLIPMFERLKARSA-----QTGARALILSPTRELALQTMKF 185
Query: 236 AKFISHCARLDSSMENGGVSSKALEDVSNA----PIGMLIATPSEVLQHIEDRNVSCDDI 291
K + L +++ GG +ED +A P ++IATP ++ + N+ +
Sbjct: 186 TKELGKFTGLKTALILGG---DKMEDQFSALHENP-DIIIATPGRLMHVAVEMNLKLQSV 241
Query: 292 RYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 345
YVV DEAD LF+ GF ++ +I++ L G QT+L +A + +ML E
Sbjct: 242 EYVVFDEADRLFEMGFAEQLQEIISRLPG--------GQQTVLFSATLPKMLVE 287
>gi|429462585|ref|YP_007184048.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
crithidii (ex Angomonas deanei ATCC 30255)]
gi|429338099|gb|AFZ82522.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
crithidii (ex Angomonas deanei ATCC 30255)]
Length = 435
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 104/194 (53%), Gaps = 9/194 (4%)
Query: 129 REKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSG 188
+EK N +++ F GL ++ ++ +G P+ IQ IP +LNG+ V+ ++ +G
Sbjct: 2 KEKRENKNKQIL--FDSFGLDQLLLNSINSIGYDTPTAIQEKAIPFILNGRDVLGAAQTG 59
Query: 189 SGRTLAYLLPLVQML--RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLD 246
+G+T A++LP++ + + + P + + R ++L T E A+Q + S L
Sbjct: 60 TGKTAAFVLPIINKILPYANSSTSPARHL-LRVLILVPTRELANQVYDSVVIYSKNTNLR 118
Query: 247 SSMENGGVSSKALEDVSNAPIG--MLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 304
S + GG E+ N +G +L+ATP ++ HIE N+ +I VLDEAD + D
Sbjct: 119 SVVLFGGADHYNQEN--NLKLGCEILVATPGRLIAHIEQGNLHLQNIEIFVLDEADRMLD 176
Query: 305 RGFGPEISKILNPL 318
GF P+I KI++ L
Sbjct: 177 MGFMPDIDKIISKL 190
>gi|430808618|ref|ZP_19435733.1| RNA helicase, partial [Cupriavidus sp. HMR-1]
gi|429498999|gb|EKZ97465.1| RNA helicase, partial [Cupriavidus sp. HMR-1]
Length = 423
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 97/184 (52%), Gaps = 8/184 (4%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF ELGL ++++AV + G P+ IQ IPA+L G ++ + +G+G+T + LP++Q
Sbjct: 2 SFSELGLSDKLVRAVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPMLQ 61
Query: 202 ML-----RRDEALLP--MKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGV 254
+L R + P +P + RA+VL T E A Q + +L S + GGV
Sbjct: 62 LLSESAARANGGNAPRGARP-NVRALVLTPTRELAAQVEESVRNYGKYLKLRSMVMFGGV 120
Query: 255 SSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+ + +++ATP +L H+ R + + +VLDEAD + D GF +I K+
Sbjct: 121 GINPQIEALRRGVDIVVATPGRLLDHVAQRTIDLSHVELLVLDEADRMLDMGFIHDIRKV 180
Query: 315 LNPL 318
LN L
Sbjct: 181 LNVL 184
>gi|410662750|ref|YP_006915121.1| ATP-dependent RNA helicase [Simiduia agarivorans SA1 = DSM 21679]
gi|409025107|gb|AFU97391.1| ATP-dependent RNA helicase [Simiduia agarivorans SA1 = DSM 21679]
Length = 456
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 110/203 (54%), Gaps = 18/203 (8%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F ELGL +IKA++ + P+++Q IPA L GK +++ S +GSG+TLA+LLPL Q
Sbjct: 2 FTELGLDERLIKALDAQSITDPTQVQNAAIPAALAGKDLLVMSETGSGKTLAFLLPLAQK 61
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK--ALE 260
L ++ + A++L T E A Q AK L + +GG K A +
Sbjct: 62 LLNNDN----RNTGTLALILAPTRELAKQILKEAKAALKFTHLKVGIVSGGDDYKFQAAQ 117
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNV-SCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319
N I LIATP +L+H +RN+ + DD++ ++LDEAD + D GF ++ I N L
Sbjct: 118 LRKNPEI--LIATPGRLLEHF-NRNLPAMDDLQVLILDEADRMLDMGFHDDMVSICNKL- 173
Query: 320 DSALKSNGQGFQTILVTAAIAEM 342
+A +S T L +A ++ M
Sbjct: 174 -AATRS------TWLFSATLSHM 189
>gi|403281618|ref|XP_003932278.1| PREDICTED: ATP-dependent RNA helicase DDX54 [Saimiri boliviensis
boliviensis]
Length = 879
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 114/230 (49%), Gaps = 20/230 (8%)
Query: 116 QPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAV 175
+P+ +++ ++++K SG FQ +GL + K + K G VP+ IQ IP +
Sbjct: 78 EPDTREMVRAQNKKKKKSGG-------FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVI 130
Query: 176 LNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHM 235
L+GK VV + +GSG+T +LLP+ + L+ A RA++L T E A Q
Sbjct: 131 LDGKDVVAMARTGSGKTACFLLPMFERLKTHSA-----QTGARALILSPTRELALQTLKF 185
Query: 236 AKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 295
K + L +++ GG + + ++IATP ++ + N+ + YVV
Sbjct: 186 TKELGKFTGLKTALILGGDRMEDQFAALHENPDIIIATPGRLVHVAVEMNLKLQSVEYVV 245
Query: 296 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 345
DEAD LF+ GF ++ +I+ L G QT+L +A + ++L E
Sbjct: 246 FDEADRLFEMGFAEQLQEIIARLPG--------GHQTVLFSATLPKLLVE 287
>gi|195123476|ref|XP_002006232.1| GI18677 [Drosophila mojavensis]
gi|193911300|gb|EDW10167.1| GI18677 [Drosophila mojavensis]
Length = 787
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 111/211 (52%), Gaps = 20/211 (9%)
Query: 138 EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLL 197
E ++SF ++ L +++A+ +G P+ IQ IP L G+ + + +G+G+T AY+L
Sbjct: 154 ETITSFYQMNLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYML 213
Query: 198 PLVQMLRRDEALLPMKPMHPRAI----VLCTTEESADQGFHMAKFISHCARLDSSMENGG 253
P V+ L +P++ +AI VL T E Q + + K + ++ + GG
Sbjct: 214 PTVER-------LLYRPLNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTSIEVGLAIGG 266
Query: 254 VSSKALEDVSNAPIGMLIATPSEVLQHIEDR-NVSCDDIRYVVLDEADTLFDRGFGPEIS 312
+ KA E V ++IATP ++ HI++ + + D I ++LDEAD + D F ++
Sbjct: 267 LDVKAQETVLRQNPDIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMK 326
Query: 313 KILNPLKDSALKSNGQGFQTILVTAAIAEML 343
+I+N S K+ QT+L +A ++E +
Sbjct: 327 EIIN----SCCKTR----QTMLFSATMSEQV 349
>gi|126440586|ref|YP_001057787.1| ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei 668]
gi|126220079|gb|ABN83585.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
668]
Length = 485
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 93/177 (52%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL +++AV ++G P+ IQ IPAVL G ++ + +G+G+T + LP++Q
Sbjct: 2 SFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L A RA++L T E A Q + S +L S++ GGVS D
Sbjct: 62 RLHAFYAENRSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQID 121
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +++ATP +L H++ + + + +VLDEAD + D GF +I ++L L
Sbjct: 122 ALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKL 178
>gi|344923278|ref|ZP_08776739.1| superfamily II DNA/RNA helicase [Candidatus Odyssella
thessalonicensis L13]
Length = 413
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 97/179 (54%), Gaps = 8/179 (4%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF E+GL +E+ + V K+G P+ IQ IP L GK ++ + +G+G+T A+LLP ++
Sbjct: 2 SFSEIGLTSELAETVAKLGYDCPTPIQNTAIPLALQGKDILACAQTGTGKTAAFLLPTIE 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA--RLDSSMENGGVSSKAL 259
+++ + + P A++L T E A Q + F+S+ A L + GG
Sbjct: 62 IIKHSRS----RHRLPSAVILAPTRELATQVYD--NFLSYTAGTNLKAISVVGGEIISIQ 115
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
E + + +LIATP ++ E + +++ VV+DEAD + D GF PE+ KI + L
Sbjct: 116 ERILKKGVDILIATPGRLIDLFERGKLILTNVKVVVIDEADRMLDMGFMPEVDKIFSFL 174
>gi|296212991|ref|XP_002753123.1| PREDICTED: ATP-dependent RNA helicase DDX54, partial [Callithrix
jacchus]
Length = 471
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 117/234 (50%), Gaps = 28/234 (11%)
Query: 116 QPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAV 175
+P+ +++ ++++K SG FQ +GL + K + K G VP+ IQ IP +
Sbjct: 78 EPDTREMVRAQNKKKKKSGG-------FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVI 130
Query: 176 LNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHM 235
L+GK VV + +GSG+T +LLP+ + L+ A RA++L T E A Q
Sbjct: 131 LDGKDVVAMARTGSGKTACFLLPMFERLKTHSA-----QTGARALILSPTRELALQTLKF 185
Query: 236 AKFISHCARLDSSMENGGVSSKALEDVSNA----PIGMLIATPSEVLQHIEDRNVSCDDI 291
K + L +++ GG +ED A P ++IATP ++ + N+ +
Sbjct: 186 TKELGKFTGLKTALILGG---DRMEDQFAALHENP-DIIIATPGRLVHVAVEMNLKLQSV 241
Query: 292 RYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 345
YVV DEAD LF+ GF ++ +I+ L G QT+L +A + ++L E
Sbjct: 242 EYVVFDEADRLFEMGFAEQLQEIIARLPG--------GHQTVLFSATLPKLLVE 287
>gi|261822185|ref|YP_003260291.1| ATP-dependent RNA helicase RhlE [Pectobacterium wasabiae WPP163]
gi|261606198|gb|ACX88684.1| DEAD/DEAH box helicase domain protein [Pectobacterium wasabiae
WPP163]
gi|385872484|gb|AFI91004.1| Putative ATP-dependent RNA helicase RhlE [Pectobacterium sp.
SCC3193]
Length = 476
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 94/178 (52%), Gaps = 1/178 (0%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL A++++A+E+ G P+ +Q IP VL G+ ++ S+ +G+G+T + LPL+Q
Sbjct: 2 SFDSLGLSADILRAIEEQGYRDPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 202 MLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE 260
+L EA K P RA++L T E A Q K S L S + GGVS
Sbjct: 62 LLTSREAQHKGKGRRPVRALILTPTRELAAQIDENVKAYSKYLPLRSLVVFGGVSINPQM 121
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +L+ATP +L R V I +VLDEAD + D GF +I ++L L
Sbjct: 122 MKLRGGVDILVATPGRLLDLEHQRAVDLSQIEILVLDEADRMLDMGFIHDIRRVLAKL 179
>gi|167903972|ref|ZP_02491177.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
NCTC 13177]
Length = 430
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 93/177 (52%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL +++AV ++G P+ IQ IPAVL G ++ + +G+G+T + LP++Q
Sbjct: 2 SFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L A RA++L T E A Q + S +L S++ GGVS D
Sbjct: 62 RLHAFYAENRSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQID 121
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +++ATP +L H++ + + + +VLDEAD + D GF +I ++L L
Sbjct: 122 ALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKL 178
>gi|84385387|ref|ZP_00988419.1| ATP-dependent RNA helicase, DEAD box family [Vibrio splendidus
12B01]
gi|84379984|gb|EAP96835.1| ATP-dependent RNA helicase, DEAD box family [Vibrio splendidus
12B01]
Length = 443
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 94/181 (51%), Gaps = 11/181 (6%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F++LGL ++K ++ +EIQ IP + GK ++ SS +GSG+TLA++LP++
Sbjct: 3 FKDLGLDNRLLKNLKHYDFKKATEIQSKAIPVAIAGKDLLASSKTGSGKTLAFVLPMIHK 62
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGF----HMAKFISHCARLDSSMENGGVSSKA 258
+ +A PR ++L T E A Q + M +S+ A L EN KA
Sbjct: 63 ALKTKAF---SAKDPRGVILAPTRELAKQVYGELRSMLGGLSYEATLILGGENFNDQVKA 119
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
L ++ATP + H+E R++ D + ++LDEAD + D GF PE+ +I N
Sbjct: 120 LRKYPR----FIVATPGRLADHLEHRSLFLDGVETLILDEADRMLDLGFAPELRRIANAA 175
Query: 319 K 319
K
Sbjct: 176 K 176
>gi|89072528|ref|ZP_01159100.1| putative ATP-dependent RNA helicase SrmB [Photobacterium sp. SKA34]
gi|89051632|gb|EAR57085.1| putative ATP-dependent RNA helicase SrmB [Photobacterium sp. SKA34]
Length = 412
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 97/176 (55%), Gaps = 5/176 (2%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ F EL L +E+++A+E++G P+ +Q IP L+GK V+ S+ +G+G+T A+LLP+
Sbjct: 1 MKDFSELELDSELLRAIEEIGYSRPTVVQAQAIPHALDGKDVMASAPTGTGKTAAFLLPM 60
Query: 200 VQMLRRDEALLPMK-PMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
+Q L+ P K P R ++L T E A Q A+ ++ L GG+S
Sbjct: 61 IQHLQD----FPRKRPGPARILILTPTRELAIQVADQARALAKYTTLKVFTITGGISYDE 116
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
++ +++ATP ++++IE C + ++LDEAD + D GFG + ++
Sbjct: 117 HAEMLGKTQDIVVATPGRLMEYIEAEKFDCRAVECLILDEADRMLDMGFGKIVERL 172
>gi|148974049|ref|ZP_01811582.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrionales
bacterium SWAT-3]
gi|145965746|gb|EDK30994.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrionales
bacterium SWAT-3]
Length = 443
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 94/181 (51%), Gaps = 11/181 (6%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F++LGL ++K ++ +EIQ IP + GK ++ SS +GSG+TLA++LP++
Sbjct: 3 FKDLGLDNRLLKNLKHYDFKKATEIQSKAIPVAMAGKDLLASSKTGSGKTLAFVLPMIHK 62
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGF----HMAKFISHCARLDSSMENGGVSSKA 258
+ +A PR ++L T E A Q + M +S+ A L EN KA
Sbjct: 63 ALKTKAF---SARDPRGVILAPTRELAKQVYGELRSMLGGLSYEAALILGGENFNDQVKA 119
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
L ++ATP + H+E R++ D + ++LDEAD + D GF PE+ +I N
Sbjct: 120 LRKYPR----FIVATPGRLADHLEHRSLFLDSVETLILDEADRMLDLGFAPELRRIANAA 175
Query: 319 K 319
K
Sbjct: 176 K 176
>gi|407804390|ref|ZP_11151214.1| ATP-dependent RNA helicase [Alcanivorax sp. W11-5]
gi|407021683|gb|EKE33447.1| ATP-dependent RNA helicase [Alcanivorax sp. W11-5]
Length = 452
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 90/174 (51%), Gaps = 3/174 (1%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF ELGL +++AV + G P+ IQ IPAVL+G ++ + +G+G+T + LP++Q
Sbjct: 2 SFSELGLHEAILRAVREQGYETPTPIQRQAIPAVLDGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L A KP R ++L T E A Q + S +L S + GGV + D
Sbjct: 62 RLIDTPA---RKPGRIRTLILAPTRELAAQVEESVRVYSRYLKLSSMVMFGGVGMQPQVD 118
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
P+ +L+A P +L H V + +VLDEAD + D GF +I ++L
Sbjct: 119 RLRKPLDILVACPGRLLDHAGQGTVDLSGVEILVLDEADRMLDMGFIHDIRRVL 172
>gi|372489782|ref|YP_005029347.1| DNA/RNA helicase [Dechlorosoma suillum PS]
gi|359356335|gb|AEV27506.1| DNA/RNA helicase, superfamily II [Dechlorosoma suillum PS]
Length = 473
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 107/213 (50%), Gaps = 9/213 (4%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F +LGLKAE+++A+ + G P+ IQ IPAVL G+ ++ + +G+G+T + LP++Q+
Sbjct: 3 FTDLGLKAEILRAIAEQGYTEPTPIQQQAIPAVLAGRDLMACAQTGTGKTAGFTLPILQL 62
Query: 203 LRR---DEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
L + E+ L PR ++L T E A Q + L S GGV
Sbjct: 63 LSQAQAGESPLNRLARKPRVLILAPTRELALQVEESVRTYGQHLPLKSMSMFGGVGMNPQ 122
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319
+ +L+A P +L HI R + I +VLDEAD + D GF +I KIL
Sbjct: 123 IAALKRGVDILVACPGRLLDHINQRTLDLSGIEILVLDEADRMLDMGFIRDIRKIL---- 178
Query: 320 DSALKSNGQGFQTILVTAAIAEMLGEQLSSLME 352
+ L NG+ Q +L +A ++ + E S +
Sbjct: 179 -ALLPPNGK-RQNLLFSATFSDEIKELARSFLH 209
>gi|315127597|ref|YP_004069600.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas sp. SM9913]
gi|315016111|gb|ADT69449.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas sp. SM9913]
Length = 408
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 97/182 (53%), Gaps = 11/182 (6%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F E L +++ A+ KMG P+ IQ IP L G+ ++ S+ +G+G+T A+L+P +Q
Sbjct: 3 FSEFDLDDKLLNAINKMGYETPTSIQQQAIPEALQGRDILASAPTGTGKTAAFLIPAIQY 62
Query: 203 L----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
L RRD P R +++ T E A Q + ++ +L + GG++
Sbjct: 63 LMDFPRRD-------PGFARVLIMTPTRELAYQIHEQCELLAKQTQLKIGVVTGGINYGT 115
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+++ +LIATP +++++E N +++ ++LDEAD + D GF E+ +I +
Sbjct: 116 HKEIFENNNDILIATPGRLMEYLETENFHAENVEMLILDEADRMLDMGFRKEMLRICDEA 175
Query: 319 KD 320
K+
Sbjct: 176 KN 177
>gi|253687917|ref|YP_003017107.1| DEAD/DEAH box helicase domain-containing protein [Pectobacterium
carotovorum subsp. carotovorum PC1]
gi|251754495|gb|ACT12571.1| DEAD/DEAH box helicase domain protein [Pectobacterium carotovorum
subsp. carotovorum PC1]
Length = 477
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 94/178 (52%), Gaps = 1/178 (0%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL A++++A+++ G P+ +Q IP VL G+ ++ S+ +G+G+T + LPL+Q
Sbjct: 2 SFDSLGLSADILRAIDEQGYRDPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 202 MLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE 260
+L EA K P RA++L T E A Q K S RL S + GGVS
Sbjct: 62 LLNSREAQNKGKGRRPVRALILTPTRELAAQIDENVKAYSKYLRLRSLVVFGGVSINPQM 121
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +L+ATP +L V I +VLDEAD + D GF +I ++L L
Sbjct: 122 MKLRGGVDILVATPGRLLDLEHQNAVDLSQIEILVLDEADRMLDMGFIHDIRRVLAKL 179
>gi|344173743|emb|CCA88920.1| ATP-dependent RNA helicase hydrolase [Ralstonia syzygii R24]
Length = 549
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 95/185 (51%), Gaps = 12/185 (6%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF ELGL ++++AV ++G P+ IQ IPA+L G ++ + +G+G+T + LPL+
Sbjct: 2 SFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLLH 61
Query: 202 MLRRDEALLPMKPMHP--------RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGG 253
L A+ P K +H RA+VL T E A Q + L S + GG
Sbjct: 62 RL---SAVQPNK-VHTSHGMRYPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGG 117
Query: 254 VSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISK 313
V D + +++ATP +L H+ R + I +VLDEAD + D GF +I K
Sbjct: 118 VGINPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRK 177
Query: 314 ILNPL 318
ILN L
Sbjct: 178 ILNIL 182
>gi|344167813|emb|CCA80061.1| ATP-dependent RNA helicase hydrolase [blood disease bacterium R229]
Length = 543
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 95/185 (51%), Gaps = 12/185 (6%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF ELGL ++++AV ++G P+ IQ IPA+L G ++ + +G+G+T + LPL+
Sbjct: 2 SFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLLH 61
Query: 202 MLRRDEALLPMKPMHP--------RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGG 253
L A+ P K +H RA+VL T E A Q + L S + GG
Sbjct: 62 RL---SAVQPNK-VHTSHGMRYPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGG 117
Query: 254 VSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISK 313
V D + +++ATP +L H+ R + I +VLDEAD + D GF +I K
Sbjct: 118 VGINPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRK 177
Query: 314 ILNPL 318
ILN L
Sbjct: 178 ILNIL 182
>gi|300692445|ref|YP_003753440.1| ATP-dependent RNA helicase hydrolase [Ralstonia solanacearum PSI07]
gi|299079505|emb|CBJ52183.1| ATP-dependent RNA helicase hydrolase [Ralstonia solanacearum PSI07]
Length = 549
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 95/185 (51%), Gaps = 12/185 (6%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF ELGL ++++AV ++G P+ IQ IPA+L G ++ + +G+G+T + LPL+
Sbjct: 2 SFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLLH 61
Query: 202 MLRRDEALLPMKPMHP--------RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGG 253
L A+ P K +H RA+VL T E A Q + L S + GG
Sbjct: 62 RL---SAVQPNK-VHTSHGMRYPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGG 117
Query: 254 VSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISK 313
V D + +++ATP +L H+ R + I +VLDEAD + D GF +I K
Sbjct: 118 VGINPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRK 177
Query: 314 ILNPL 318
ILN L
Sbjct: 178 ILNIL 182
>gi|288959250|ref|YP_003449591.1| ATP-dependent RNA helicase [Azospirillum sp. B510]
gi|288911558|dbj|BAI73047.1| ATP-dependent RNA helicase [Azospirillum sp. B510]
Length = 456
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 111/219 (50%), Gaps = 19/219 (8%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF ELGL ++KA+E P+ +Q IP L G+ ++ ++ +G+G+T A++LP +
Sbjct: 2 SFSELGLHPLVLKALEAFEYTTPTPVQLAAIPPALQGRDILATAETGTGKTAAFMLPALT 61
Query: 202 MLRRDEALLPMK-PMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE 260
A LP+ PR +VL T E A Q A+ + +L+ GG+ +
Sbjct: 62 R----TAELPLNGAATPRVLVLAPTRELAKQVTDAARKYAKFMKLNIVDVVGGMPYREQL 117
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPE---ISKILNP 317
+ + P+ +L+ATP +L H+ R ++ D++ ++LDEAD + D GF + I+K P
Sbjct: 118 RLLSRPVDVLVATPGRLLDHVARRRIALDEVEVLILDEADRMLDMGFLDDVETIAKCCPP 177
Query: 318 LKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLER 356
+ QT+L TA + + + +L+ ER
Sbjct: 178 TR-----------QTLLFTATLDRRMAQLAGNLLRNPER 205
>gi|281343478|gb|EFB19062.1| hypothetical protein PANDA_014817 [Ailuropoda melanoleuca]
Length = 819
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 115/230 (50%), Gaps = 20/230 (8%)
Query: 116 QPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAV 175
+P+ +++ ++++K SG FQ +GL + K + K G VP+ IQ IP +
Sbjct: 21 EPDTREMVRAQNKKKKKSGG-------FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVI 73
Query: 176 LNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHM 235
L+GK VV + +GSG+T +L+P+ + L+ A RA+VL T E A Q
Sbjct: 74 LDGKDVVAMARTGSGKTACFLIPMFERLKTRSA-----QTGARALVLSPTRELALQTMKF 128
Query: 236 AKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 295
K + L +++ GG + + ++IATP ++ + N+ + YVV
Sbjct: 129 TKELGKFTGLRTALILGGDKMEDQFAALHENPDIIIATPGRLVHVAVEMNLRLQSVEYVV 188
Query: 296 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 345
DEAD LF+ GF ++ +I++ L G QT+L +A + ++L E
Sbjct: 189 FDEADRLFEMGFAEQLQEIISRLPG--------GHQTVLFSATLPKLLVE 230
>gi|167892936|ref|ZP_02480338.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
7894]
Length = 416
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 93/177 (52%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL +++AV ++G P+ IQ IPAVL G ++ + +G+G+T + LP++Q
Sbjct: 2 SFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L A RA++L T E A Q + S +L S++ GGVS D
Sbjct: 62 RLHAFYAENRSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQID 121
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +++ATP +L H++ + + + +VLDEAD + D GF +I ++L L
Sbjct: 122 ALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKL 178
>gi|167844421|ref|ZP_02469929.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
B7210]
Length = 427
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 93/177 (52%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL +++AV ++G P+ IQ IPAVL G ++ + +G+G+T + LP++Q
Sbjct: 2 SFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L A RA++L T E A Q + S +L S++ GGVS D
Sbjct: 62 RLHAFYAENRSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQID 121
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +++ATP +L H++ + + + +VLDEAD + D GF +I ++L L
Sbjct: 122 ALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKL 178
>gi|320539202|ref|ZP_08038873.1| putative ATP-dependent RNA helicase [Serratia symbiotica str.
Tucson]
gi|320030840|gb|EFW12848.1| putative ATP-dependent RNA helicase [Serratia symbiotica str.
Tucson]
Length = 440
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 94/176 (53%), Gaps = 5/176 (2%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
V+ F EL L +I A+ G P+ IQ IP +NG+ V+ S+ +G+G+T A+LLP+
Sbjct: 3 VTHFSELELDERLIIALHDKGYDRPTAIQAEAIPPAMNGRDVLGSAPTGTGKTAAFLLPV 62
Query: 200 VQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
+Q L P K P R ++L T E A Q A+ ++ LD + GGV+
Sbjct: 63 LQHL----LDFPRKKSGPPRVLILTPTRELAMQVADQARELAAHTSLDIATITGGVAYMN 118
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+V + M++AT +LQ+I++ N C + ++LDEAD + D GF +I I
Sbjct: 119 HAEVFSENQDMVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEII 174
>gi|157375528|ref|YP_001474128.1| DEAD/DEAH box helicase [Shewanella sediminis HAW-EB3]
gi|157317902|gb|ABV37000.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
HAW-EB3]
Length = 462
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 93/177 (52%), Gaps = 3/177 (1%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL A ++ A+ ++G P+ IQ IP L GK+++ ++ +GSG+T ++LP+++
Sbjct: 2 SFSTLGLSAPILNAISELGYLTPTPIQAEAIPLALKGKNLIAAAQTGSGKTATFVLPILE 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
ML R E + RA++L T E A Q + L S GGV +
Sbjct: 62 MLARSET---QRKKRARALILTPTRELAVQVCKSIEVYGKNLNLKSIAIYGGVDYAPQKQ 118
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +++ATP + R + D+I +VLDEAD + D GF +I+KI++ L
Sbjct: 119 ALIDGVDIVVATPGRLRDLYTQRAIHFDEIEMLVLDEADRMLDMGFIEDITKIIDTL 175
>gi|363740165|ref|XP_003642273.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX54
[Gallus gallus]
Length = 858
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 75/262 (28%), Positives = 121/262 (46%), Gaps = 32/262 (12%)
Query: 109 ENKPSPPQPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQ 168
E+K + Q + ++++KS G FQ +GL + K V K G VP+ IQ
Sbjct: 48 EDKDGDAAEDTQAMVRAQNKKKKSGG--------FQSMGLSYPVFKGVMKKGYKVPTPIQ 99
Query: 169 CVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEES 228
IP +L G+ VV + +GSG+T +LLP+ + L+ P RA++L T E
Sbjct: 100 RKTIPVILRGRDVVAMARTGSGKTACFLLPMFERLKAPS------PSGARALILSPTREL 153
Query: 229 ADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSC 288
A Q K + L +++ GG + + ++IATP ++ + N+
Sbjct: 154 ALQTLKFTKELGKFTGLKTALVLGGDKMEDQFAALHENPDIIIATPGRLVHVAVEMNLKL 213
Query: 289 DDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLS 348
+ YVV DEAD LF+ GF ++ +IL L S QT+L +A + ++L
Sbjct: 214 QSVEYVVFDEADRLFEMGFAEQLQEILARLPGS--------HQTVLFSATLPKLL----- 260
Query: 349 SLMECLERDNAGKVTAMLLEMD 370
+E AG ML+ +D
Sbjct: 261 -----VEFARAGLTEPMLIRLD 277
>gi|320531823|ref|ZP_08032743.1| DEAD/DEAH box helicase, partial [Actinomyces sp. oral taxon 171
str. F0337]
gi|320135962|gb|EFW27990.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 171 str. F0337]
Length = 449
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 98/177 (55%), Gaps = 5/177 (2%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
++F +LG+ +++ ++ G P IQ +P L G+ V+ +GSG+TLA+ LPLV
Sbjct: 10 ATFADLGVDSDLAADLDARGFTAPFPIQAATLPDTLAGRDVLGRGRTGSGKTLAFSLPLV 69
Query: 201 QML-RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
Q L ++D+A +P HP +VL T E A Q + + ++ +D + GGVS+K
Sbjct: 70 QRLAQQDKA----RPGHPIGLVLAPTRELALQIAEVIEPLARVVDMDVTTIFGGVSAKPQ 125
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
E A + +++A P +L + VS D++ VLDEAD + D GF P + +IL
Sbjct: 126 EKALKAGVDVVVACPGRLLDLMGQGLVSLDEVEITVLDEADHMADLGFLPGVRRILR 182
>gi|381169049|ref|ZP_09878224.1| Putative ATP-dependent RNA helicase [Phaeospirillum molischianum
DSM 120]
gi|380681838|emb|CCG43046.1| Putative ATP-dependent RNA helicase [Phaeospirillum molischianum
DSM 120]
Length = 536
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 98/177 (55%), Gaps = 4/177 (2%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F++LGL E++KA+ ++G P+ IQ IP VL G+ V+ + +G+G+T ++ LP+++
Sbjct: 2 TFEDLGLGPELLKALAEVGYTSPTPIQAQAIPVVLMGRDVLGCAQTGTGKTASFTLPMIE 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
+L A K PR+++L T E A Q RL ++ GG S
Sbjct: 62 ILAAGRA----KARMPRSLILAPTRELAAQAAENFDNYGKYHRLTKALIIGGESMSDQSA 117
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ + + +LIATP +L E + +D++ +V+DEAD + D GF P++ +I+ L
Sbjct: 118 LLDRGVDVLIATPGRLLDMFERGRILLNDVKVLVIDEADRMLDMGFIPDVERIVGLL 174
>gi|323497187|ref|ZP_08102207.1| ATP-dependent RNA helicase [Vibrio sinaloensis DSM 21326]
gi|323317762|gb|EGA70753.1| ATP-dependent RNA helicase [Vibrio sinaloensis DSM 21326]
Length = 419
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 93/180 (51%), Gaps = 3/180 (1%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
+ F+ LGL ++ + +G P+++Q IP +L GK V+ + +G+G+T A+ LP++
Sbjct: 3 TEFESLGLSQPLLTTLNTLGFTTPTQVQQQSIPHILLGKDVLAGAQTGTGKTAAFGLPII 62
Query: 201 QMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE 260
Q L + E++ + RA+VL T E A Q + + L GG S
Sbjct: 63 QQLIQSESVRDPQGNDVRALVLVPTRELAQQVYDNLVQYAESTPLKIVTAYGGTSINVQT 122
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL---NP 317
+ +LI TP ++ H+ +NVS Y+VLDEAD + D GF P+I +IL NP
Sbjct: 123 RNLHQGCDILIVTPGRLIDHMFCKNVSLAKTEYLVLDEADRMLDMGFMPDIQRILKRFNP 182
>gi|74317119|ref|YP_314859.1| DEAD/DEAH box helicase [Thiobacillus denitrificans ATCC 25259]
gi|74056614|gb|AAZ97054.1| DEAD/DEAH box helicase [Thiobacillus denitrificans ATCC 25259]
Length = 460
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 102/179 (56%), Gaps = 5/179 (2%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+++F ELGL ++++A+++MG P+ IQ IP L G ++ ++ +G+G+T A+ LPL
Sbjct: 1 MTTFAELGLAPDILRALDEMGYVSPTPIQAQVIPRALQGGDILGAAQTGTGKTAAFALPL 60
Query: 200 VQMLR--RDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSS 256
+Q L + + P K HP RA++L T E A Q + + L S + GGV+
Sbjct: 61 IQRLLPFANTSTSPAK--HPIRALILTPTRELAIQVEEAIQAYTKHVPLRSLVVYGGVNI 118
Query: 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
+ + +L+ATP +L H++++ + + +VLDEAD + D GF P++ +I+
Sbjct: 119 NTQIPILKTGVEILVATPGRLLDHVQNKTLMLTQVNTLVLDEADRMLDMGFMPDLRRIV 177
>gi|242015175|ref|XP_002428249.1| ATP-dependent RNA helicase DDX54, putative [Pediculus humanus
corporis]
gi|212512810|gb|EEB15511.1| ATP-dependent RNA helicase DDX54, putative [Pediculus humanus
corporis]
Length = 723
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 73/253 (28%), Positives = 121/253 (47%), Gaps = 29/253 (11%)
Query: 118 EQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLN 177
E++++ N AS ++K+ G FQ G ++K ++K G +P+ IQ IP +L
Sbjct: 12 EKEEVGN-ASTKKKNGGG-------FQAFGFSFPVLKGIQKRGYKIPTPIQRKSIPLILQ 63
Query: 178 GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK 237
G+ VV + +GSG+T +LLP+ + L P + RA++L T E A Q K
Sbjct: 64 GRDVVAMARTGSGKTACFLLPMFEKLINKT---PKSRLGVRALILSPTRELALQTVKFIK 120
Query: 238 FISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLD 297
+ +L + GG S + +++ATP L + + + YVV D
Sbjct: 121 ELGKFTKLKALAILGGDSMDQQFGAIHENPDIIVATPGRFLHICVEMELKLTSVEYVVFD 180
Query: 298 EADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERD 357
EAD LF+ GFG ++ +IL+ L G QT+L +A + ++L ++
Sbjct: 181 EADRLFEMGFGEQLKEILDRL--------GVSRQTVLFSATLPKLL----------VDFA 222
Query: 358 NAGKVTAMLLEMD 370
AG V +LL +D
Sbjct: 223 KAGLVNPVLLRLD 235
>gi|26327531|dbj|BAC27509.1| unnamed protein product [Mus musculus]
Length = 909
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 114/230 (49%), Gaps = 20/230 (8%)
Query: 116 QPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAV 175
+P+ +++ ++++K SG FQ +GL + K + K G VP+ IQ IP +
Sbjct: 77 EPDTREMVRAQNKKKKKSGG-------FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVI 129
Query: 176 LNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHM 235
L+GK VV + +GSG+T +LLP+ + L+ A RA++L T E A Q
Sbjct: 130 LDGKDVVAMARTGSGKTACFLLPMFERLKARSAQ-----TGARALILSPTRELALQTMKF 184
Query: 236 AKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 295
K + L +++ GG + + ++IATP ++ + N+ + YVV
Sbjct: 185 TKELGKFTGLKTALILGGDKMEDQFAALHENPDIIIATPGRLVHVAVEMNLKLQSVEYVV 244
Query: 296 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 345
DEAD LF+ GF ++ +I+ L G QT+L +A + ++L E
Sbjct: 245 FDEADRLFEMGFAEQLQEIIGRLPG--------GHQTVLFSATLPKLLVE 286
>gi|76811549|ref|YP_332327.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1710b]
gi|126454229|ref|YP_001065030.1| ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei 1106a]
gi|242316165|ref|ZP_04815181.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
1106b]
gi|254196606|ref|ZP_04903030.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
S13]
gi|254260651|ref|ZP_04951705.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
1710a]
gi|403517400|ref|YP_006651533.1| ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei BPC006]
gi|76581002|gb|ABA50477.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1710b]
gi|126227871|gb|ABN91411.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
1106a]
gi|169653349|gb|EDS86042.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
S13]
gi|242139404|gb|EES25806.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
1106b]
gi|254219340|gb|EET08724.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
1710a]
gi|403073043|gb|AFR14623.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
BPC006]
Length = 485
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 93/177 (52%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL +++AV ++G P+ IQ IPAVL G ++ + +G+G+T + LP++Q
Sbjct: 2 SFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L A RA++L T E A Q + S +L S++ GGVS D
Sbjct: 62 RLHAFYAENRSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQID 121
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +++ATP +L H++ + + + +VLDEAD + D GF +I ++L L
Sbjct: 122 ALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKL 178
>gi|294676409|ref|YP_003577024.1| ATP-dependent RNA helicase SrmB [Rhodobacter capsulatus SB 1003]
gi|294475229|gb|ADE84617.1| ATP-dependent RNA helicase SrmB [Rhodobacter capsulatus SB 1003]
Length = 548
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 93/177 (52%), Gaps = 4/177 (2%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++ F +L L +++A+ G P+ IQ IP L G+ V+ + +G+G+T ++ LP+
Sbjct: 1 MTKFTDLKLDPAVLRAIADAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPM 60
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259
V ML A M PR++VLC T E A Q + RL ++ GGVS
Sbjct: 61 VTMLSSGRARARM----PRSLVLCPTRELAAQVAENFDTYAKYTRLTKALLIGGVSFGEQ 116
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316
+ + + + +LIATP +L H E + ++ +V+DEAD + D GF P+I +I
Sbjct: 117 DKLIDRGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFQ 173
>gi|167561646|ref|ZP_02354562.1| putative ATP-dependent RNA helicase rhlE [Burkholderia oklahomensis
EO147]
Length = 395
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 93/177 (52%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL +++AV ++G P+ IQ IPAVL G ++ + +G+G+T + LP++Q
Sbjct: 2 SFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L A RA++L T E A Q + S +L S++ GGVS D
Sbjct: 62 RLHTFYAENRGARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQID 121
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +++ATP +L H++ + + + +VLDEAD + D GF +I ++L L
Sbjct: 122 ALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKL 178
>gi|70992295|ref|XP_750996.1| ATP dependent RNA helicase (Dbp10) [Aspergillus fumigatus Af293]
gi|74697392|sp|Q8NJM2.1|DBP10_ASPFU RecName: Full=ATP-dependent RNA helicase dbp10
gi|21627815|emb|CAD37147.1| putative ATP-dependent RNA helicase [Aspergillus fumigatus]
gi|66848629|gb|EAL88958.1| ATP dependent RNA helicase (Dbp10), putative [Aspergillus fumigatus
Af293]
gi|159124566|gb|EDP49684.1| ATP dependent RNA helicase (Dbp10), putative [Aspergillus fumigatus
A1163]
Length = 869
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 73/242 (30%), Positives = 123/242 (50%), Gaps = 21/242 (8%)
Query: 109 ENKPSPPQ----PEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVP 164
++K PP+ EQQ +N + K G + FQ +GL A ++KA+ + G VP
Sbjct: 36 KSKRQPPKKAFIAEQQTSANRKASNLK--GRTVKKGGGFQAMGLSANLLKAIARKGFSVP 93
Query: 165 SEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCT 224
+ IQ IP +++ + VV + +GSG+T A+++P+++ L+ + R +VL
Sbjct: 94 TPIQRKTIPVIMDDQDVVGMARTGSGKTAAFVIPMIEKLKSHST-----KVGARGLVLSP 148
Query: 225 TEESADQGFHMAKFISHCARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIED 283
+ E A Q + K + L S + GG S + ++ P ++IATP L +
Sbjct: 149 SRELALQTLKVVKELGRGTDLKSVLLVGGDSLEEQFAMIAGNP-DIIIATPGRFLHLKVE 207
Query: 284 RNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEML 343
N+ IRYVV DEAD LF+ GF ++++IL+ L + QT+L +A + + L
Sbjct: 208 MNLDLSSIRYVVFDEADRLFEMGFAAQLTEILHGLPANR--------QTLLFSATLPKSL 259
Query: 344 GE 345
E
Sbjct: 260 VE 261
>gi|50121729|ref|YP_050896.1| ATP-dependent RNA helicase RhlE [Pectobacterium atrosepticum
SCRI1043]
gi|49612255|emb|CAG75705.1| putative ATP-dependent RNA helicase [Pectobacterium atrosepticum
SCRI1043]
Length = 483
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 94/178 (52%), Gaps = 1/178 (0%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL A++++A+E+ G P+ +Q IP VL G+ ++ S+ +G+G+T + LPL+Q
Sbjct: 2 SFDSLGLSADILRAIEEQGYRDPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 202 MLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE 260
+L EA K P RA++L T E A Q K S L S + GGVS
Sbjct: 62 LLTSREAQNKGKGRRPVRALILTPTRELAAQIDENVKAYSKYLPLRSLVVFGGVSINPQM 121
Query: 261 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ +L+ATP +L R V I +VLDEAD + D GF +I ++L L
Sbjct: 122 MKLRGGVDILVATPGRLLDLEHQRAVDLSQIEILVLDEADRMLDMGFIHDIRRVLAKL 179
>gi|329948141|ref|ZP_08295013.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 170 str. F0386]
gi|328522874|gb|EGF49979.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 170 str. F0386]
Length = 525
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 105/195 (53%), Gaps = 11/195 (5%)
Query: 126 ASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSS 185
AS R S + + ++F LG+ +++ ++ G P IQ +P L G+ V+
Sbjct: 18 ASYRFASGKAPSAGEATFASLGVDSDLAADLDSRGFTAPFPIQAATLPDTLAGRDVLGRG 77
Query: 186 GSGSGRTLAYLLPLVQML-RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 244
+GSG+TLA+ LPLVQ L ++D+A +P HP +VL T E A Q +A+ I AR
Sbjct: 78 RTGSGKTLAFSLPLVQRLAQQDKA----RPGHPIGLVLAPTRELALQ---IAEVIEPLAR 130
Query: 245 ---LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 301
+D + GGVS+K E A + +++A P +L + VS D++ VLDEAD
Sbjct: 131 VVDMDVTTIFGGVSAKPQEKALKAGVDVVVACPGRLLDLMGQGLVSLDEVEITVLDEADH 190
Query: 302 LFDRGFGPEISKILN 316
+ D GF P + +IL
Sbjct: 191 MADLGFLPNVRRILR 205
>gi|338998719|ref|ZP_08637388.1| DEAD/DEAH box helicase domain-containing protein [Halomonas sp.
TD01]
gi|338764404|gb|EGP19367.1| DEAD/DEAH box helicase domain-containing protein [Halomonas sp.
TD01]
Length = 398
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 102/174 (58%), Gaps = 5/174 (2%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F +LGL +++A+ ++G P+ IQ IPA+L+GK ++ ++ +G+G+T A++LPL++
Sbjct: 3 FSKLGLSRPLVQAITELGYKTPTPIQEQAIPAILSGKDLIATAQTGTGKTAAFVLPLLER 62
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSSKALED 261
EAL + RA++L T E A Q ++A++ H +L S GGV + ++
Sbjct: 63 FSNAEAL---RGKRIRALILVPTRELAVQVEANVAQYAKHT-QLTSMAVYGGVDTAPQKE 118
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
+ +L+ATP +L R + D+++ +VLDEAD + D GF +I KIL
Sbjct: 119 RLIEGVDILVATPGRLLDLAHQRALHFDELQVMVLDEADRMVDMGFVDDIHKIL 172
>gi|410692356|ref|YP_003622977.1| ATP-dependent RNA helicase [Thiomonas sp. 3As]
gi|294338780|emb|CAZ87114.1| ATP-dependent RNA helicase [Thiomonas sp. 3As]
Length = 533
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 98/176 (55%), Gaps = 3/176 (1%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SFQ+LGL +++AV + G VP+ IQ IP VL G ++ ++ +G+G+T + LP++Q
Sbjct: 2 SFQDLGLIEPLVRAVAEQGYTVPTPIQLQAIPVVLAGHDLLAAAQTGTGKTAGFTLPMLQ 61
Query: 202 MLRRDEALLPMK-PMHPRAIVLCTTEESADQGF-HMAKFISHCARLDSSMENGGVSSKAL 259
L E K + PRA++L T E A Q ++A + H +L S GGV +
Sbjct: 62 RLSGGEPARNAKGKIIPRALILTPTRELAAQVHENLAAYGRHL-KLHSMAMYGGVGMQPQ 120
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
+ + +++ATP +L H RN+ ++ +VLDEAD + D GF ++ +I+
Sbjct: 121 INALARGMDIVVATPGRLLDHQSQRNIDLSAVQMLVLDEADRMLDMGFVHDMRRIV 176
>gi|359446869|ref|ZP_09236508.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas sp. BSi20439]
gi|358039341|dbj|GAA72757.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas sp. BSi20439]
Length = 408
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 97/182 (53%), Gaps = 11/182 (6%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F E L +++ A+ KMG P+ IQ IP L G+ ++ S+ +G+G+T A+L+P +Q
Sbjct: 3 FSEFDLDDKLLNAINKMGYETPTSIQQQAIPEALQGRDILASAPTGTGKTAAFLIPAIQY 62
Query: 203 L----RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
L RRD P R +++ T E A Q + ++ +L + GG++
Sbjct: 63 LMDFPRRD-------PGFARVLIMTPTRELAYQIHEQCELLAKQTQLKIGVVTGGINYGT 115
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+++ +LIATP +++++E N +++ ++LDEAD + D GF E+ +I +
Sbjct: 116 HKEIFENNNDILIATPGRLMEYLETENFHAENVEMLILDEADRMLDMGFRKEMLRICDEA 175
Query: 319 KD 320
K+
Sbjct: 176 KN 177
>gi|307203840|gb|EFN82776.1| ATP-dependent RNA helicase abstrakt [Harpegnathos saltator]
Length = 624
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 109/207 (52%), Gaps = 15/207 (7%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ ++ +E+ G+ P+ IQ GIP VL+G+ ++ + +GSG+TL ++LP+
Sbjct: 182 LKSFKEMKFHRGILYGLEQKGIIKPTPIQVQGIPTVLSGRDMIGIASTGSGKTLVFVLPI 241
Query: 200 VQMLRRDEALLP-MKPMHPRAIVLCTTEESADQGFHMAKFISH------CARLDSSMENG 252
++ E +P +K P +++C + E A Q + + + ++ C + S + G
Sbjct: 242 IEFCLEQELDMPFIKKEGPYGLIICPSRELAKQTYDIIRHYTNSLRQADCPEIRSCLAIG 301
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
GV + N + +++ATP ++ + + V+ RY+ +DEAD + D GF ++
Sbjct: 302 GVPVSESLVIINKGVHIMVATPGRLMDMLHKKMVTLSVCRYLCMDEADRMIDMGFEEDVR 361
Query: 313 KILNPLKDSALKSNGQGFQTILVTAAI 339
I + + GQ QT+L +A +
Sbjct: 362 TIFSFFR-------GQR-QTLLFSATM 380
>gi|253999448|ref|YP_003051511.1| DEAD/DEAH box helicase [Methylovorus glucosetrophus SIP3-4]
gi|313201470|ref|YP_004040128.1| dead/deah box helicase domain-containing protein [Methylovorus sp.
MP688]
gi|253986127|gb|ACT50984.1| DEAD/DEAH box helicase domain protein [Methylovorus glucosetrophus
SIP3-4]
gi|312440786|gb|ADQ84892.1| DEAD/DEAH box helicase domain protein [Methylovorus sp. MP688]
Length = 459
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 95/174 (54%), Gaps = 1/174 (0%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F +LGL E++KA+E+ G VP+ IQ IP VL G ++ + +G+G+T A+ LPL+Q
Sbjct: 8 FADLGLAPEILKALEEFGYTVPTPIQAQAIPVVLQGHDLMAGAQTGTGKTAAFSLPLLQK 67
Query: 203 LRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L + HP RA++L T E A Q K + L S + GGV K
Sbjct: 68 LLPQASSSASPARHPVRALILTPTRELAIQVEESVKVYAKHTALRSLVVFGGVDIKTQTP 127
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
+ +L+ATP +L H+E R V ++ ++LDEAD + D GF P++ +IL
Sbjct: 128 SLMKGVEILVATPGRLLDHVEQRTVQLGQVQMLILDEADRMLDMGFMPDLKRIL 181
>gi|149912233|ref|ZP_01900811.1| ATP-dependent RNA helicase [Moritella sp. PE36]
gi|149804692|gb|EDM64744.1| ATP-dependent RNA helicase [Moritella sp. PE36]
Length = 421
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 93/177 (52%), Gaps = 5/177 (2%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F+ L L ++I A+ L P+ IQ +P + G+ ++ S+ +G+G+TLA+LLP +Q
Sbjct: 3 FESLDLDPQLIVALTDNNLVQPTLIQQQVLPTAMEGRDILASAPTGTGKTLAFLLPAIQH 62
Query: 203 LRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L P + + P R ++L T E A Q F AK ++ SM GGV +
Sbjct: 63 LLD----FPRRELGPGRVLILTPTRELASQVFQQAKMLAAYTDHKVSMVTGGVDYALHAE 118
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
V + ++IATP +L++I C I ++LDEAD + D GF ++ +I N +
Sbjct: 119 VLKNNLDIVIATPGRLLEYIRRDAFECAAIEVLILDEADRMLDMGFYDDVKRITNEM 175
>gi|145348205|ref|XP_001418546.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578775|gb|ABO96839.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 546
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 109/205 (53%), Gaps = 16/205 (7%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F+ + + ++ +AV++ G VP+ IQ IP L G+ VV + +GSG+T A+L+P++
Sbjct: 87 FESMDILPDVFRAVKRKGYRVPTPIQRKAIPPALEGRDVVAMARTGSGKTAAFLIPVLSK 146
Query: 203 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA-LED 261
LR R ++L T E A Q F AK ++ L + GG S +A D
Sbjct: 147 LRTHSL-----KAGARCVILAPTRELALQTFKFAKELAKFTDLRVAALVGGDSMEAQFAD 201
Query: 262 VSNAPIGMLIATPSEVLQHIED-RNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 320
+SN P +++ATP +L HI++ + + + +VVLDEAD L + GF ++ +I+N + D
Sbjct: 202 LSNNP-DVIVATPGRLLHHIDEVKAFTLRTVCHVVLDEADRLLEMGFADQLKQIMNSVAD 260
Query: 321 SALKSNGQGFQTILVTAAIAEMLGE 345
QT+L +A + L E
Sbjct: 261 VR--------QTLLFSATLPSALAE 277
>gi|443704392|gb|ELU01455.1| hypothetical protein CAPTEDRAFT_148841 [Capitella teleta]
Length = 580
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 109/207 (52%), Gaps = 15/207 (7%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ +F+E+ ++ ++KMG+ P+ IQ GIP VL+G+ ++ + +GSG+T+ + LPL
Sbjct: 138 IKTFKEMKFPKPLLSCLKKMGIKAPTPIQIQGIPTVLSGRDMIGIAFTGSGKTIVFTLPL 197
Query: 200 VQMLRRDEALLP-MKPMHPRAIVLCTTEESADQGFHMAKFISHCAR------LDSSMENG 252
+ E LP ++ P +++C + E A Q + IS + S + G
Sbjct: 198 MMFCLEQEKRLPFIRDEGPYGLIICPSRELARQTNDIIVSISQYMENEGFPAIRSGLCIG 257
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
GV+ K DV + + +L+ATP ++ + + ++ D RY+ +DEAD + D GF ++
Sbjct: 258 GVAVKEQMDVIHKGVHVLVATPGRLMDMLAKKMINLDVCRYLCMDEADRMIDMGFEEDVR 317
Query: 313 KILNPLKDSALKSNGQGFQTILVTAAI 339
I + K GQ QT+L +A +
Sbjct: 318 TIFSYFK-------GQR-QTLLFSATM 336
>gi|409201536|ref|ZP_11229739.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas flavipulchra
JG1]
Length = 408
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 96/173 (55%), Gaps = 5/173 (2%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQM 202
F E L +++I A++KMG P+ IQ + IP L G+ ++ S+ +G+G+T A+L+P +Q
Sbjct: 3 FTEFDLDSKLISAIKKMGFDTPTSIQQMAIPEALIGRDILASAPTGTGKTAAFLIPAIQY 62
Query: 203 LRRDEALLPMK-PMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
L P K P R +++ T E A Q + ++ L + GG++ + ++
Sbjct: 63 LLD----FPRKEPGFARVLIMTPTRELAYQIHEQCELLAAGVNLKIGVVTGGINYGSHKE 118
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314
+ +LIATP +++++E N +++ ++LDEAD + D GF E+ +I
Sbjct: 119 IFEKNNDILIATPGRLMEYLETENFHAENVELLILDEADRMLDMGFRKEMLRI 171
>gi|152995016|ref|YP_001339851.1| DEAD/DEAH box helicase [Marinomonas sp. MWYL1]
gi|150835940|gb|ABR69916.1| DEAD/DEAH box helicase domain protein [Marinomonas sp. MWYL1]
Length = 463
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 91/174 (52%), Gaps = 3/174 (1%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF +LGL A ++KA+E G PS IQ IPA+L G+ V+ ++ +G+G+T + LPL++
Sbjct: 6 SFNKLGLSAPILKAIEDQGYTEPSAIQAQAIPAILEGQDVMAAAQTGTGKTAGFTLPLLE 65
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
+L + E + RA+VL T E A Q K L S++ GGV
Sbjct: 66 ILSKGEN---AQSNQVRALVLTPTRELAAQVAESVKNYGQHLSLKSTVVFGGVKINPQMM 122
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
+LIATP ++ + V D + +VLDEAD + D GF +I KIL
Sbjct: 123 ALRRGADILIATPGRMMDLYNQKAVRFDKLEVLVLDEADRMLDMGFIHDIKKIL 176
>gi|296134828|ref|YP_003642070.1| DEAD/DEAH box helicase [Thiomonas intermedia K12]
gi|295794950|gb|ADG29740.1| DEAD/DEAH box helicase domain protein [Thiomonas intermedia K12]
Length = 533
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 98/176 (55%), Gaps = 3/176 (1%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SFQ+LGL +++AV + G VP+ IQ IP VL G ++ ++ +G+G+T + LP++Q
Sbjct: 2 SFQDLGLIEPLVRAVAEQGYTVPTPIQLQAIPVVLAGHDLLAAAQTGTGKTAGFTLPMLQ 61
Query: 202 MLRRDEALLPMK-PMHPRAIVLCTTEESADQGF-HMAKFISHCARLDSSMENGGVSSKAL 259
L E K + PRA++L T E A Q ++A + H +L S GGV +
Sbjct: 62 RLSGGEPARNAKGKIIPRALILTPTRELAAQVHENLAAYGRHL-KLHSMAMYGGVGMQPQ 120
Query: 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
+ + +++ATP +L H RN+ ++ +VLDEAD + D GF ++ +I+
Sbjct: 121 INALARGMDIVVATPGRLLDHQSQRNIDLSAVQMLVLDEADRMLDMGFVHDMRRIV 176
>gi|448746777|ref|ZP_21728442.1| DEAD-like helicase [Halomonas titanicae BH1]
gi|445565705|gb|ELY21814.1| DEAD-like helicase [Halomonas titanicae BH1]
Length = 429
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 108/183 (59%), Gaps = 5/183 (2%)
Query: 137 AEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYL 196
+E++ F +LGL + +++A+ ++G P+ IQ IPA+L+G ++ ++ +G+G+T A++
Sbjct: 28 SELLMPFSKLGLSSPLVQAITELGYKTPTPIQEQAIPAILSGNDLIATAQTGTGKTAAFV 87
Query: 197 LPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVS 255
LPL++ L + RA++L T E A Q ++A++ H +L S GGV
Sbjct: 88 LPLLERFSNAGTL---RGKRIRALILVPTRELAVQVEANVAQYAKHT-QLTSMAMYGGVD 143
Query: 256 SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
++A ++ + +L+ATP +L R + D+++ +VLDEAD + D GF +I KI+
Sbjct: 144 TEAQKERLIKGVDILVATPGRLLDLAHQRALHFDELKVMVLDEADRMVDMGFVDDIHKII 203
Query: 316 NPL 318
+ L
Sbjct: 204 DRL 206
>gi|322379432|ref|ZP_08053802.1| ATP-dependent RNA helicase, DEAD-box family [Helicobacter suis HS1]
gi|322380957|ref|ZP_08055023.1| ATP-dependent DEAD box-containing RNA helicase [Helicobacter suis
HS5]
gi|321146629|gb|EFX41463.1| ATP-dependent DEAD box-containing RNA helicase [Helicobacter suis
HS5]
gi|321148141|gb|EFX42671.1| ATP-dependent RNA helicase, DEAD-box family [Helicobacter suis HS1]
Length = 471
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 103/187 (55%), Gaps = 16/187 (8%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
V SF++LGL ++++K++ G PS IQ IP +L GK V+ + +G+G+T A+ LP+
Sbjct: 19 VCSFKDLGLHSKILKSIADAGFTGPSPIQEKAIPVILEGKDVIAQAQTGTGKTAAFALPI 78
Query: 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESA----DQGFHMAKFISHCARLDSSMENGGVS 255
+Q L+ D+++ A+++ T E A D+ F + K +R + GG S
Sbjct: 79 IQNLQNDKSI--------EALIITPTRELAMQISDEIFKLGK----SSRTRTICVYGGQS 126
Query: 256 SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
K D+ ++IATP +L H++++ + R VVLDE+D + D GF +I +I
Sbjct: 127 IKKQCDLLERNPQVMIATPGRLLDHLKNKRLKRFAPRVVVLDESDEMLDMGFLDDIEEIF 186
Query: 316 NPLKDSA 322
N L + A
Sbjct: 187 NYLPEDA 193
>gi|355564704|gb|EHH21204.1| hypothetical protein EGK_04216 [Macaca mulatta]
Length = 790
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 114/230 (49%), Gaps = 20/230 (8%)
Query: 116 QPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAV 175
+P+ +++ ++++K SG FQ +GL + K + K G VP+ IQ IP +
Sbjct: 78 EPDTREMVRAQNKKKKKSGG-------FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVI 130
Query: 176 LNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHM 235
L+GK VV + +GSG+T +LLP+ + L+ A RA++L T E A Q
Sbjct: 131 LDGKDVVAMARTGSGKTACFLLPMFERLKTHSA-----QTGARALILSPTRELALQTLKF 185
Query: 236 AKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 295
K + L +++ GG + + ++IATP ++ + N+ + YVV
Sbjct: 186 TKELGKFTGLKTALILGGDRMEDQFAALHENPDIIIATPGRLVHVAVEMNLKLQSVEYVV 245
Query: 296 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 345
DEAD LF+ GF ++ +I+ L G QT+L +A + ++L E
Sbjct: 246 FDEADRLFEMGFAEQLQEIIARLPG--------GHQTVLFSATLPKLLVE 287
>gi|256822194|ref|YP_003146157.1| DEAD/DEAH box helicase [Kangiella koreensis DSM 16069]
gi|256795733|gb|ACV26389.1| DEAD/DEAH box helicase domain protein [Kangiella koreensis DSM
16069]
Length = 458
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 130/259 (50%), Gaps = 34/259 (13%)
Query: 141 SSFQEL--GLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
S FQEL GL+ KA +K+ VPSE+Q I +L+G V++S+ +GSG+T A+LLP
Sbjct: 5 SIFQELHSGLQ----KAFQKLKFEVPSEVQEKAIEPILDGHDVMVSAETGSGKTAAFLLP 60
Query: 199 LVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258
++ L + P + R ++L T E A Q A+ ++ ++ + + GG K
Sbjct: 61 IIHNLLEN----PSRHTSTRVLILAPTRELARQIDKHARDLTQFTQIKTGLIIGGADYKY 116
Query: 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318
+ + ++IATP +L+H E + +D+ Y+V+DEAD +F+ GF ++ I
Sbjct: 117 QQAIFRDNPEIIIATPGRMLEHCEKQGADLNDLEYLVIDEADKMFEMGFTDDVQAIAGFC 176
Query: 319 KDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAGKVTAMLLEMDQAEVFDLT 378
K QT+L +A L+ +T L++ QA V +
Sbjct: 177 KSDR--------QTLLFSA---------------TLKTKGIKHLTDYLMDEPQAIVLNSF 213
Query: 379 ESQ-DALKKKVVEAMDSLH 396
E++ D++++ ++ A D +H
Sbjct: 214 EAKNDSIEQFIITADDLVH 232
>gi|255034017|ref|YP_003084638.1| DEAD/DEAH box helicase [Dyadobacter fermentans DSM 18053]
gi|254946773|gb|ACT91473.1| DEAD/DEAH box helicase domain protein [Dyadobacter fermentans DSM
18053]
Length = 590
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 114/209 (54%), Gaps = 24/209 (11%)
Query: 138 EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLL 197
E +F+ELGL ++KA+++MG PS IQ GIPAVL G V+ + +G+G+T A+ +
Sbjct: 4 ETFQTFEELGLNENILKALQEMGFEKPSPIQAQGIPAVLQGSDVIGQAQTGTGKTAAFGI 63
Query: 198 PLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQ-----GFHMAKFISHCARLDSSMENG 252
P+++ + + +A++LC T E A Q G ++KF+ R++ ++ G
Sbjct: 64 PVLERIDTSSNAV-------QALILCPTRELAVQVSEELG-RLSKFM-RGVRIE-AIYGG 113
Query: 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS 312
+ + + + +++ TP V+ H+E R + D++R +VLDEAD + D GF +I
Sbjct: 114 DSIDRQIRSLKKG-VHIVVGTPGRVMDHMERRTLKFDEVRMMVLDEADEMLDMGFREDIE 172
Query: 313 KILNPLKDSALKSNGQGFQTILVTAAIAE 341
IL + + QTIL +A +++
Sbjct: 173 SILADMPEDR--------QTILFSATMSK 193
>gi|212555159|gb|ACJ27613.1| Helicase, DEAD box [Shewanella piezotolerans WP3]
Length = 482
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 93/174 (53%), Gaps = 3/174 (1%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL A+++KAV G PS IQ IPAVL GK V+ ++ +G+G+T + LPL++
Sbjct: 2 SFASLGLSAQILKAVANKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLE 61
Query: 202 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261
+L + P K + RA+VL T E A Q + L S++ GGV
Sbjct: 62 LLSKGNK-APAKQV--RALVLTPTRELAAQVGESVEIYGKNLPLKSAVIFGGVGIGPQIS 118
Query: 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315
+ + +L+ATP +L R V+ + +VLDEAD + D GF +I KIL
Sbjct: 119 KLSRGVDILVATPGRLLDLYNQRAVNFSQLEVLVLDEADRMLDMGFIHDIKKIL 172
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.311 0.128 0.344
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,812,348,232
Number of Sequences: 23463169
Number of extensions: 238155181
Number of successful extensions: 830916
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 22420
Number of HSP's successfully gapped in prelim test: 4356
Number of HSP's that attempted gapping in prelim test: 777676
Number of HSP's gapped (non-prelim): 29764
length of query: 402
length of database: 8,064,228,071
effective HSP length: 145
effective length of query: 257
effective length of database: 8,957,035,862
effective search space: 2301958216534
effective search space used: 2301958216534
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 78 (34.7 bits)