Query 015712
Match_columns 402
No_of_seqs 337 out of 2369
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 08:52:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015712.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015712hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0331 ATP-dependent RNA heli 100.0 1.1E-46 2.4E-51 376.2 21.6 244 142-396 92-337 (519)
2 KOG0330 ATP-dependent RNA heli 100.0 3.4E-46 7.3E-51 352.9 17.1 242 136-395 56-298 (476)
3 KOG0338 ATP-dependent RNA heli 100.0 6.1E-46 1.3E-50 360.7 14.8 223 140-374 180-403 (691)
4 COG0513 SrmB Superfamily II DN 100.0 2.7E-43 5.7E-48 362.7 24.6 239 141-394 29-270 (513)
5 KOG0339 ATP-dependent RNA heli 100.0 1.2E-43 2.5E-48 344.5 19.5 251 133-395 215-465 (731)
6 KOG0333 U5 snRNP-like RNA heli 100.0 1.2E-42 2.6E-47 338.9 18.7 262 135-401 239-519 (673)
7 KOG0341 DEAD-box protein abstr 100.0 1E-43 2.2E-48 335.4 8.0 255 133-401 162-423 (610)
8 KOG0343 RNA Helicase [RNA proc 100.0 2.7E-42 5.7E-47 338.0 14.3 238 130-379 58-298 (758)
9 KOG0328 Predicted ATP-dependen 100.0 5E-42 1.1E-46 312.6 14.2 246 135-397 21-266 (400)
10 PTZ00110 helicase; Provisional 100.0 1.9E-40 4.1E-45 344.3 25.1 249 134-395 123-373 (545)
11 PLN00206 DEAD-box ATP-dependen 100.0 3.3E-40 7.2E-45 341.2 25.7 250 134-395 114-363 (518)
12 PRK04837 ATP-dependent RNA hel 100.0 1.3E-39 2.8E-44 329.6 25.1 245 140-393 7-251 (423)
13 KOG0345 ATP-dependent RNA heli 100.0 6E-40 1.3E-44 316.8 21.2 241 141-394 4-252 (567)
14 KOG0342 ATP-dependent RNA heli 100.0 2.6E-40 5.7E-45 321.1 17.6 235 135-380 76-315 (543)
15 KOG0335 ATP-dependent RNA heli 100.0 1E-40 2.2E-45 328.4 14.8 254 135-395 68-326 (482)
16 KOG0348 ATP-dependent RNA heli 100.0 3.3E-40 7.2E-45 322.4 16.7 223 135-358 130-360 (708)
17 KOG0347 RNA helicase [RNA proc 100.0 1.3E-39 2.7E-44 319.2 18.4 209 133-344 173-391 (731)
18 KOG0336 ATP-dependent RNA heli 100.0 6.5E-40 1.4E-44 311.5 14.6 227 137-373 215-443 (629)
19 KOG0346 RNA helicase [RNA proc 100.0 1.8E-39 3.9E-44 311.1 17.7 210 141-359 19-231 (569)
20 PRK11634 ATP-dependent RNA hel 100.0 1.8E-38 3.9E-43 333.1 24.8 220 140-374 5-225 (629)
21 PRK04537 ATP-dependent RNA hel 100.0 2.1E-38 4.5E-43 330.4 24.3 214 141-360 9-223 (572)
22 PRK10590 ATP-dependent RNA hel 100.0 3.1E-38 6.7E-43 322.2 24.1 210 142-360 2-211 (456)
23 PRK11776 ATP-dependent RNA hel 100.0 3.6E-38 7.9E-43 322.3 23.7 206 140-360 3-209 (460)
24 KOG0340 ATP-dependent RNA heli 100.0 6.5E-39 1.4E-43 300.3 15.2 239 139-395 5-249 (442)
25 KOG0334 RNA helicase [RNA proc 100.0 5.9E-39 1.3E-43 335.7 16.3 252 134-397 358-612 (997)
26 PRK11192 ATP-dependent RNA hel 100.0 4.2E-37 9E-42 312.3 25.3 239 142-393 2-241 (434)
27 KOG0326 ATP-dependent RNA heli 100.0 3E-38 6.6E-43 292.1 10.0 219 141-375 85-303 (459)
28 PRK01297 ATP-dependent RNA hel 100.0 2.4E-36 5.3E-41 309.9 24.7 216 138-359 84-300 (475)
29 KOG0329 ATP-dependent RNA heli 100.0 6.8E-37 1.5E-41 275.6 10.7 240 141-397 42-283 (387)
30 KOG0337 ATP-dependent RNA heli 100.0 4.2E-36 9.1E-41 286.7 14.6 240 140-396 20-259 (529)
31 PTZ00424 helicase 45; Provisio 100.0 1.8E-34 3.8E-39 290.0 24.5 206 139-359 26-231 (401)
32 KOG0327 Translation initiation 100.0 6E-36 1.3E-40 283.8 11.6 227 133-374 18-245 (397)
33 cd00268 DEADc DEAD-box helicas 100.0 1.3E-33 2.7E-38 257.5 22.3 202 143-357 1-202 (203)
34 KOG4284 DEAD box protein [Tran 100.0 4E-34 8.7E-39 284.6 15.9 227 136-378 20-248 (980)
35 KOG0332 ATP-dependent RNA heli 100.0 9.9E-33 2.1E-37 260.3 13.1 243 133-395 82-328 (477)
36 KOG0350 DEAD-box ATP-dependent 100.0 2.6E-31 5.6E-36 258.6 15.9 225 127-357 113-388 (620)
37 TIGR03817 DECH_helic helicase/ 100.0 1.6E-30 3.5E-35 277.9 22.1 198 147-357 20-221 (742)
38 KOG0344 ATP-dependent RNA heli 100.0 5.3E-30 1.2E-34 254.5 12.7 252 137-401 128-389 (593)
39 PRK02362 ski2-like helicase; P 100.0 3.8E-29 8.3E-34 269.0 19.9 181 142-341 2-183 (737)
40 PF00270 DEAD: DEAD/DEAH box h 100.0 1.1E-28 2.4E-33 217.7 18.2 167 165-345 1-168 (169)
41 PRK00254 ski2-like helicase; P 100.0 3.7E-28 8.1E-33 260.7 23.2 189 142-353 2-191 (720)
42 PRK13767 ATP-dependent helicas 99.9 3.5E-27 7.7E-32 256.8 19.6 188 148-341 18-219 (876)
43 TIGR02621 cas3_GSU0051 CRISPR- 99.9 8.6E-27 1.9E-31 246.5 21.0 183 159-359 12-235 (844)
44 PRK09401 reverse gyrase; Revie 99.9 1.1E-26 2.5E-31 256.7 22.1 208 152-375 69-312 (1176)
45 PRK01172 ski2-like helicase; P 99.9 7.8E-27 1.7E-31 249.1 18.6 189 142-352 2-190 (674)
46 COG1201 Lhr Lhr-like helicases 99.9 1.4E-26 3.1E-31 243.6 18.3 197 148-354 8-206 (814)
47 TIGR01054 rgy reverse gyrase. 99.9 8.4E-25 1.8E-29 242.2 22.7 209 150-374 65-309 (1171)
48 PLN03137 ATP-dependent DNA hel 99.9 1.4E-24 3E-29 233.3 22.5 185 145-352 441-639 (1195)
49 PRK14701 reverse gyrase; Provi 99.9 6.1E-25 1.3E-29 247.9 20.7 226 150-395 66-329 (1638)
50 TIGR00614 recQ_fam ATP-depende 99.9 4.1E-25 8.8E-30 226.5 17.4 171 158-351 6-184 (470)
51 COG1205 Distinct helicase fami 99.9 1.1E-23 2.5E-28 226.6 20.5 198 148-357 55-259 (851)
52 TIGR01389 recQ ATP-dependent D 99.9 9.7E-24 2.1E-28 222.2 18.3 176 154-352 3-185 (591)
53 PRK11057 ATP-dependent DNA hel 99.9 1.8E-23 3.9E-28 220.2 19.3 182 147-351 8-196 (607)
54 PRK10689 transcription-repair 99.9 8.3E-23 1.8E-27 225.7 22.0 181 150-359 588-778 (1147)
55 TIGR00580 mfd transcription-re 99.9 1.5E-22 3.2E-27 219.5 22.5 181 148-357 436-627 (926)
56 COG1204 Superfamily II helicas 99.9 7.5E-23 1.6E-27 217.6 19.1 187 147-353 15-202 (766)
57 PRK12899 secA preprotein trans 99.9 4.4E-23 9.6E-28 217.8 15.2 149 143-303 64-228 (970)
58 PRK10917 ATP-dependent DNA hel 99.9 2.9E-22 6.3E-27 213.4 21.1 165 152-345 251-425 (681)
59 KOG0349 Putative DEAD-box RNA 99.9 3.9E-23 8.4E-28 198.6 9.0 218 140-359 1-431 (725)
60 TIGR00643 recG ATP-dependent D 99.9 8.7E-22 1.9E-26 208.3 18.6 169 150-344 223-401 (630)
61 COG1202 Superfamily II helicas 99.9 2.1E-22 4.6E-27 199.4 12.6 199 140-354 193-396 (830)
62 PRK09751 putative ATP-dependen 99.9 8.6E-22 1.9E-26 219.4 15.9 164 183-352 1-180 (1490)
63 smart00487 DEXDc DEAD-like hel 99.9 8.6E-21 1.9E-25 169.7 18.2 187 158-360 3-191 (201)
64 PHA02653 RNA helicase NPH-II; 99.9 3.6E-21 7.7E-26 202.4 18.0 173 166-360 167-351 (675)
65 KOG0952 DNA/RNA helicase MER3/ 99.8 8.4E-21 1.8E-25 198.7 13.9 189 157-353 104-297 (1230)
66 COG1111 MPH1 ERCC4-like helica 99.8 3.2E-19 6.9E-24 175.7 19.1 213 161-394 13-234 (542)
67 TIGR01970 DEAH_box_HrpB ATP-de 99.8 2.4E-19 5.1E-24 192.7 19.7 161 169-357 8-171 (819)
68 PRK11664 ATP-dependent RNA hel 99.8 2.4E-19 5.1E-24 193.0 18.6 161 169-357 11-174 (812)
69 PHA02558 uvsW UvsW helicase; P 99.8 1.3E-19 2.8E-24 187.1 15.8 151 161-342 112-262 (501)
70 TIGR03158 cas3_cyano CRISPR-as 99.8 2.5E-18 5.4E-23 170.2 20.7 163 167-350 1-202 (357)
71 TIGR01587 cas3_core CRISPR-ass 99.8 6E-19 1.3E-23 174.8 13.4 154 180-352 1-178 (358)
72 PRK13766 Hef nuclease; Provisi 99.8 5.2E-18 1.1E-22 184.2 21.7 175 160-354 12-186 (773)
73 COG0514 RecQ Superfamily II DN 99.8 1E-18 2.2E-23 178.6 14.3 179 152-353 5-190 (590)
74 TIGR00963 secA preprotein tran 99.8 1.4E-18 3.1E-23 181.7 13.2 131 159-304 53-190 (745)
75 PRK05580 primosome assembly pr 99.8 1.8E-17 4E-22 176.3 20.4 158 163-346 144-311 (679)
76 PRK09200 preprotein translocas 99.8 4.3E-18 9.3E-23 180.5 14.8 131 159-303 75-212 (790)
77 KOG0354 DEAD-box like helicase 99.8 1.1E-17 2.5E-22 173.1 16.6 167 161-346 60-228 (746)
78 PRK12898 secA preprotein trans 99.8 6.4E-18 1.4E-22 175.7 14.1 130 159-303 100-255 (656)
79 COG4581 Superfamily II RNA hel 99.7 1E-17 2.3E-22 179.5 14.7 173 152-352 109-281 (1041)
80 PRK13104 secA preprotein trans 99.7 1.6E-17 3.4E-22 176.3 13.5 130 159-303 79-215 (896)
81 TIGR03714 secA2 accessory Sec 99.7 2.4E-17 5.2E-22 173.5 13.3 133 159-304 67-209 (762)
82 cd00046 DEXDc DEAD-like helica 99.7 1.7E-16 3.7E-21 133.7 15.1 144 179-339 1-144 (144)
83 KOG0353 ATP-dependent DNA heli 99.7 3.7E-16 8E-21 148.6 14.6 190 140-352 70-273 (695)
84 PRK11131 ATP-dependent RNA hel 99.7 5.3E-16 1.2E-20 170.9 16.8 157 169-355 80-242 (1294)
85 KOG0951 RNA helicase BRR2, DEA 99.7 3.7E-16 8E-21 166.2 14.8 188 147-342 295-487 (1674)
86 KOG0352 ATP-dependent DNA heli 99.7 5.6E-16 1.2E-20 149.4 14.3 184 151-357 6-206 (641)
87 PRK12904 preprotein translocas 99.6 1E-15 2.3E-20 162.2 13.1 130 159-303 78-214 (830)
88 KOG0947 Cytoplasmic exosomal R 99.6 1.2E-15 2.5E-20 159.0 11.3 165 157-353 292-456 (1248)
89 KOG0351 ATP-dependent DNA heli 99.6 2.2E-15 4.7E-20 162.4 12.8 177 154-353 255-444 (941)
90 PRK09694 helicase Cas3; Provis 99.6 1.8E-14 4E-19 155.4 15.5 171 162-348 285-489 (878)
91 KOG0948 Nuclear exosomal RNA h 99.6 1.1E-14 2.3E-19 148.7 12.0 178 163-369 129-313 (1041)
92 PF04851 ResIII: Type III rest 99.6 2.9E-14 6.4E-19 126.7 12.9 151 163-340 3-183 (184)
93 TIGR00595 priA primosomal prot 99.6 2.2E-14 4.8E-19 147.8 13.8 134 182-344 1-144 (505)
94 PRK13107 preprotein translocas 99.6 1.3E-14 2.9E-19 153.8 11.6 131 159-304 79-216 (908)
95 COG1110 Reverse gyrase [DNA re 99.6 1.4E-13 3E-18 145.2 18.8 230 152-401 71-344 (1187)
96 TIGR01967 DEAH_box_HrpA ATP-de 99.5 2.9E-13 6.2E-18 149.9 19.0 170 159-355 60-235 (1283)
97 COG1200 RecG RecG-like helicas 99.5 9E-13 2E-17 135.3 19.1 169 147-344 246-426 (677)
98 COG1061 SSL2 DNA or RNA helica 99.5 1.9E-13 4.2E-18 138.9 13.0 148 162-343 35-187 (442)
99 KOG0950 DNA polymerase theta/e 99.5 2.3E-13 5E-18 142.8 12.7 192 143-352 203-398 (1008)
100 TIGR00603 rad25 DNA repair hel 99.5 2.9E-13 6.4E-18 142.7 13.2 149 163-342 255-414 (732)
101 PRK11448 hsdR type I restricti 99.5 1.5E-12 3.3E-17 144.4 17.9 162 163-344 413-599 (1123)
102 TIGR01407 dinG_rel DnaQ family 99.5 6.3E-13 1.4E-17 145.5 14.7 146 148-304 231-454 (850)
103 COG1197 Mfd Transcription-repa 99.4 1.9E-11 4.1E-16 132.1 20.1 187 148-363 579-776 (1139)
104 PRK07246 bifunctional ATP-depe 99.4 3.3E-12 7.2E-17 138.5 14.0 136 156-304 239-450 (820)
105 TIGR03117 cas_csf4 CRISPR-asso 99.4 4.1E-12 8.9E-17 132.8 13.5 61 172-240 10-70 (636)
106 KOG0949 Predicted helicase, DE 99.3 1E-11 2.3E-16 130.2 13.0 168 163-352 511-682 (1330)
107 TIGR00348 hsdR type I site-spe 99.3 4.1E-11 8.9E-16 127.8 16.1 152 164-341 239-404 (667)
108 PRK13103 secA preprotein trans 99.2 5.2E-11 1.1E-15 126.9 12.4 130 159-303 79-215 (913)
109 PF07652 Flavi_DEAD: Flaviviru 99.2 1.8E-10 3.9E-15 97.7 10.5 138 177-343 3-140 (148)
110 PRK12326 preprotein translocas 99.2 1.9E-10 4.2E-15 120.0 12.5 130 159-303 75-211 (764)
111 smart00489 DEXDc3 DEAD-like he 99.2 3.8E-10 8.2E-15 108.6 13.3 73 163-239 8-84 (289)
112 smart00488 DEXDc2 DEAD-like he 99.2 3.8E-10 8.2E-15 108.6 13.3 73 163-239 8-84 (289)
113 PRK12906 secA preprotein trans 99.2 2.2E-10 4.7E-15 121.7 12.5 130 159-303 77-213 (796)
114 PRK08074 bifunctional ATP-depe 99.1 3.3E-10 7.1E-15 125.0 13.9 65 160-234 255-323 (928)
115 COG1198 PriA Primosomal protei 99.1 6.7E-10 1.4E-14 117.4 15.2 155 163-346 198-366 (730)
116 COG1203 CRISPR-associated heli 99.1 3.5E-10 7.6E-15 121.9 13.2 181 164-357 196-398 (733)
117 COG4098 comFA Superfamily II D 99.1 1.3E-09 2.8E-14 103.5 14.9 151 163-347 97-251 (441)
118 COG1643 HrpA HrpA-like helicas 99.1 9.6E-10 2.1E-14 117.8 15.9 177 168-373 55-233 (845)
119 COG4096 HsdR Type I site-speci 99.1 3E-10 6.6E-15 118.6 9.7 162 163-355 165-337 (875)
120 CHL00122 secA preprotein trans 99.1 7.9E-10 1.7E-14 117.5 11.8 130 159-303 73-209 (870)
121 PRK12902 secA preprotein trans 99.1 1.3E-09 2.9E-14 115.7 12.7 130 159-303 82-218 (939)
122 PF07517 SecA_DEAD: SecA DEAD- 99.1 2.2E-09 4.7E-14 101.3 12.8 131 158-303 73-210 (266)
123 KOG0920 ATP-dependent RNA heli 99.0 4.9E-09 1.1E-13 112.4 16.0 165 164-353 174-340 (924)
124 PF00176 SNF2_N: SNF2 family N 99.0 3.4E-09 7.3E-14 101.8 12.5 145 178-341 25-174 (299)
125 PRK11747 dinG ATP-dependent DN 98.9 1.5E-08 3.3E-13 108.6 15.7 64 160-233 23-95 (697)
126 PLN03142 Probable chromatin-re 98.9 2.9E-08 6.3E-13 109.1 17.4 161 163-346 169-337 (1033)
127 KOG0922 DEAH-box RNA helicase 98.8 1.1E-07 2.4E-12 97.6 16.7 160 168-353 56-216 (674)
128 KOG2340 Uncharacterized conser 98.8 7.8E-08 1.7E-12 96.0 13.8 210 162-372 215-519 (698)
129 PRK04914 ATP-dependent helicas 98.8 5.5E-08 1.2E-12 106.4 12.4 160 163-341 152-317 (956)
130 PRK12903 secA preprotein trans 98.8 8.6E-08 1.9E-12 101.9 13.1 130 159-303 75-211 (925)
131 KOG0951 RNA helicase BRR2, DEA 98.7 2.6E-08 5.6E-13 107.5 7.7 152 162-341 1142-1301(1674)
132 COG1199 DinG Rad3-related DNA 98.7 1.5E-07 3.2E-12 100.8 12.0 71 157-236 9-83 (654)
133 TIGR02562 cas3_yersinia CRISPR 98.6 2.6E-07 5.5E-12 100.1 12.2 171 163-349 408-644 (1110)
134 PRK14873 primosome assembly pr 98.6 3.3E-07 7.1E-12 97.3 12.1 137 185-346 167-310 (665)
135 KOG0926 DEAH-box RNA helicase 98.5 9.9E-07 2.2E-11 91.9 12.2 155 172-340 265-425 (1172)
136 KOG0925 mRNA splicing factor A 98.5 7.7E-06 1.7E-10 81.3 17.4 195 138-357 22-216 (699)
137 PRK15483 type III restriction- 98.5 1.5E-06 3.3E-11 94.3 13.5 143 179-341 60-240 (986)
138 PRK12900 secA preprotein trans 98.5 4.1E-07 8.9E-12 98.1 9.1 127 163-303 138-271 (1025)
139 KOG1123 RNA polymerase II tran 98.5 2.2E-07 4.7E-12 92.3 6.1 153 163-346 302-465 (776)
140 KOG0924 mRNA splicing factor A 98.5 3.3E-06 7.1E-11 86.8 14.4 170 160-355 353-524 (1042)
141 PF13604 AAA_30: AAA domain; P 98.4 1.6E-06 3.5E-11 78.7 10.3 125 163-339 1-131 (196)
142 KOG0385 Chromatin remodeling c 98.4 3.5E-06 7.6E-11 87.7 13.8 166 163-353 167-341 (971)
143 COG0610 Type I site-specific r 98.4 3.9E-06 8.4E-11 92.9 13.9 138 179-340 274-414 (962)
144 PRK12901 secA preprotein trans 98.3 1.2E-06 2.6E-11 94.7 8.6 127 163-303 169-303 (1112)
145 PF06862 DUF1253: Protein of u 98.3 8E-06 1.7E-10 82.1 13.4 159 215-374 36-268 (442)
146 PF13086 AAA_11: AAA domain; P 98.3 2.1E-06 4.5E-11 79.0 8.5 73 164-238 2-75 (236)
147 KOG0390 DNA repair protein, SN 98.2 2.7E-05 5.8E-10 82.8 15.9 161 163-340 238-415 (776)
148 KOG0923 mRNA splicing factor A 98.2 1.6E-05 3.4E-10 81.7 13.2 162 165-353 267-431 (902)
149 COG4889 Predicted helicase [Ge 98.2 5E-06 1.1E-10 87.6 9.5 147 142-303 141-317 (1518)
150 PF02562 PhoH: PhoH-like prote 98.2 1.3E-05 2.8E-10 72.9 10.3 146 162-338 3-155 (205)
151 PF02399 Herpes_ori_bp: Origin 98.1 1.3E-05 2.9E-10 85.0 11.0 151 180-353 51-204 (824)
152 PF13872 AAA_34: P-loop contai 98.1 4.7E-05 1E-09 72.6 13.6 179 144-353 24-232 (303)
153 KOG0952 DNA/RNA helicase MER3/ 98.1 8.1E-07 1.8E-11 95.0 0.6 165 163-340 927-1094(1230)
154 KOG4439 RNA polymerase II tran 98.1 1.1E-05 2.4E-10 83.4 8.6 163 164-339 326-501 (901)
155 KOG0387 Transcription-coupled 98.0 5.6E-05 1.2E-09 79.2 13.0 161 163-346 205-383 (923)
156 PRK10536 hypothetical protein; 98.0 0.00014 2.9E-09 68.3 13.7 145 159-337 55-211 (262)
157 PF09848 DUF2075: Uncharacteri 97.9 3.8E-05 8.2E-10 76.1 9.2 108 180-317 3-117 (352)
158 KOG0389 SNF2 family DNA-depend 97.9 5.9E-05 1.3E-09 79.0 10.7 163 164-349 400-573 (941)
159 PF14617 CMS1: U3-containing 9 97.9 3.7E-05 8.1E-10 72.0 7.9 87 213-300 123-211 (252)
160 TIGR00604 rad3 DNA repair heli 97.9 5.4E-05 1.2E-09 81.8 9.8 74 160-240 7-84 (705)
161 PRK10875 recD exonuclease V su 97.9 0.00015 3.3E-09 76.6 12.8 141 165-337 154-300 (615)
162 TIGR01448 recD_rel helicase, p 97.8 0.00028 6.1E-09 76.3 14.2 67 158-233 319-385 (720)
163 KOG1802 RNA helicase nonsense 97.8 0.00011 2.4E-09 75.7 9.9 75 156-239 403-477 (935)
164 PRK13889 conjugal transfer rel 97.8 0.0005 1.1E-08 76.1 15.7 128 158-338 342-470 (988)
165 TIGR01447 recD exodeoxyribonuc 97.8 0.0004 8.6E-09 73.2 14.1 142 165-337 147-294 (586)
166 COG0653 SecA Preprotein transl 97.8 8.8E-05 1.9E-09 79.3 9.2 130 159-303 77-213 (822)
167 KOG4150 Predicted ATP-dependen 97.7 5.2E-05 1.1E-09 76.8 6.4 185 153-346 276-468 (1034)
168 TIGR00376 DNA helicase, putati 97.7 0.00036 7.8E-09 74.4 12.7 66 163-238 157-223 (637)
169 TIGR02768 TraA_Ti Ti-type conj 97.7 0.0012 2.5E-08 71.8 16.5 136 148-336 338-474 (744)
170 KOG0921 Dosage compensation co 97.7 0.0003 6.6E-09 74.7 10.9 150 172-341 387-537 (1282)
171 KOG1803 DNA helicase [Replicat 97.6 0.00033 7.2E-09 71.8 10.0 63 163-235 185-248 (649)
172 KOG0392 SNF2 family DNA-depend 97.6 0.00072 1.6E-08 74.1 12.9 166 165-347 977-1147(1549)
173 KOG0384 Chromodomain-helicase 97.6 0.00021 4.6E-09 78.1 9.0 163 162-347 369-544 (1373)
174 KOG1000 Chromatin remodeling p 97.6 0.00072 1.6E-08 67.8 11.9 151 161-339 196-348 (689)
175 PF13245 AAA_19: Part of AAA d 97.6 0.00036 7.8E-09 53.2 7.8 60 171-236 2-62 (76)
176 COG3587 Restriction endonuclea 97.6 0.00045 9.8E-09 73.3 10.4 146 180-345 76-248 (985)
177 PF12340 DUF3638: Protein of u 97.6 0.0012 2.6E-08 60.9 12.0 152 141-304 3-186 (229)
178 KOG1002 Nucleotide excision re 97.5 0.00071 1.5E-08 67.8 11.1 158 163-346 184-362 (791)
179 KOG0391 SNF2 family DNA-depend 97.5 0.0022 4.7E-08 70.1 14.4 158 165-345 617-782 (1958)
180 PF05970 PIF1: PIF1-like helic 97.4 0.00054 1.2E-08 68.3 8.2 138 164-336 2-148 (364)
181 PRK13826 Dtr system oriT relax 97.3 0.0059 1.3E-07 68.3 15.9 139 147-338 366-505 (1102)
182 KOG1132 Helicase of the DEAD s 97.3 0.0015 3.2E-08 69.7 10.5 77 163-239 21-133 (945)
183 cd00009 AAA The AAA+ (ATPases 97.3 0.0039 8.5E-08 52.0 11.5 25 178-203 19-43 (151)
184 PF00580 UvrD-helicase: UvrD/R 97.3 0.0008 1.7E-08 64.8 8.0 70 164-241 1-70 (315)
185 PF13401 AAA_22: AAA domain; P 97.2 0.00085 1.8E-08 56.0 6.5 19 177-195 3-21 (131)
186 PRK12723 flagellar biosynthesi 97.2 0.0052 1.1E-07 61.5 12.9 134 178-351 174-310 (388)
187 PRK04296 thymidine kinase; Pro 97.1 0.0029 6.3E-08 57.1 9.5 99 178-319 2-103 (190)
188 PRK14974 cell division protein 97.1 0.0092 2E-07 58.6 12.8 133 179-352 141-277 (336)
189 PRK08181 transposase; Validate 97.0 0.014 2.9E-07 55.7 13.1 47 175-232 103-149 (269)
190 PRK08727 hypothetical protein; 97.0 0.0074 1.6E-07 56.3 11.1 35 179-223 42-76 (233)
191 PHA02533 17 large terminase pr 97.0 0.0099 2.1E-07 62.1 13.1 150 163-339 59-210 (534)
192 KOG0953 Mitochondrial RNA heli 97.0 0.0014 3.1E-08 66.6 6.1 105 178-310 191-295 (700)
193 PF03354 Terminase_1: Phage Te 96.9 0.0034 7.4E-08 64.9 9.0 149 166-337 1-161 (477)
194 PRK06526 transposase; Provisio 96.8 0.012 2.5E-07 55.7 10.8 21 175-195 95-115 (254)
195 COG1875 NYN ribonuclease and A 96.8 0.0077 1.7E-07 58.8 9.4 64 159-229 224-289 (436)
196 PF05127 Helicase_RecD: Helica 96.8 0.00073 1.6E-08 60.1 2.3 139 182-355 1-142 (177)
197 PRK11889 flhF flagellar biosyn 96.8 0.022 4.8E-07 56.9 12.7 131 179-352 242-376 (436)
198 PRK11331 5-methylcytosine-spec 96.8 0.0063 1.4E-07 61.6 9.0 32 164-195 180-211 (459)
199 PRK14722 flhF flagellar biosyn 96.8 0.011 2.4E-07 58.8 10.7 170 141-352 81-271 (374)
200 COG2805 PilT Tfp pilus assembl 96.8 0.0019 4.2E-08 61.4 5.0 50 137-206 102-152 (353)
201 PHA03333 putative ATPase subun 96.7 0.053 1.2E-06 57.4 15.8 144 165-340 171-333 (752)
202 PF00448 SRP54: SRP54-type pro 96.7 0.025 5.3E-07 51.3 12.0 133 181-353 4-139 (196)
203 KOG1805 DNA replication helica 96.7 0.012 2.7E-07 63.5 11.3 129 161-303 667-809 (1100)
204 PRK07952 DNA replication prote 96.7 0.035 7.6E-07 52.1 13.2 110 179-344 100-210 (244)
205 KOG0388 SNF2 family DNA-depend 96.7 0.043 9.3E-07 57.7 14.7 153 165-341 569-735 (1185)
206 cd01122 GP4d_helicase GP4d_hel 96.7 0.0097 2.1E-07 56.5 9.4 64 151-223 3-66 (271)
207 cd01120 RecA-like_NTPases RecA 96.7 0.014 3.1E-07 50.0 9.6 39 181-229 2-40 (165)
208 PRK06893 DNA replication initi 96.7 0.0058 1.2E-07 56.8 7.5 46 289-341 90-136 (229)
209 PRK14087 dnaA chromosomal repl 96.7 0.01 2.2E-07 60.8 9.9 112 179-344 142-254 (450)
210 smart00382 AAA ATPases associa 96.6 0.0053 1.2E-07 50.6 6.5 18 178-195 2-19 (148)
211 PF00308 Bac_DnaA: Bacterial d 96.6 0.0097 2.1E-07 54.9 8.7 110 180-345 36-146 (219)
212 PRK06921 hypothetical protein; 96.6 0.05 1.1E-06 51.8 13.2 45 177-231 116-160 (266)
213 PRK12422 chromosomal replicati 96.5 0.021 4.7E-07 58.3 11.3 56 289-351 201-257 (445)
214 PRK06835 DNA replication prote 96.5 0.025 5.5E-07 55.5 11.2 45 177-232 182-226 (329)
215 COG1444 Predicted P-loop ATPas 96.5 0.022 4.9E-07 60.9 11.4 150 156-341 207-358 (758)
216 PRK08116 hypothetical protein; 96.5 0.068 1.5E-06 50.9 13.8 43 179-232 115-157 (268)
217 PHA03368 DNA packaging termina 96.5 0.037 7.9E-07 58.4 12.4 134 179-341 255-392 (738)
218 PRK14712 conjugal transfer nic 96.5 0.028 6.1E-07 65.0 12.6 63 163-233 835-901 (1623)
219 TIGR01547 phage_term_2 phage t 96.4 0.025 5.4E-07 56.9 11.0 149 180-352 3-153 (396)
220 cd01124 KaiC KaiC is a circadi 96.4 0.018 4E-07 51.1 8.7 48 181-239 2-49 (187)
221 KOG0989 Replication factor C, 96.4 0.011 2.5E-07 56.3 7.4 55 285-348 124-178 (346)
222 PRK00149 dnaA chromosomal repl 96.4 0.034 7.3E-07 57.1 11.5 44 179-231 149-192 (450)
223 PRK08084 DNA replication initi 96.4 0.018 3.8E-07 53.8 8.7 18 178-195 45-62 (235)
224 PRK05703 flhF flagellar biosyn 96.4 0.062 1.3E-06 54.7 13.2 19 178-196 221-239 (424)
225 TIGR02760 TraI_TIGR conjugativ 96.4 0.035 7.7E-07 66.3 13.0 136 163-338 429-566 (1960)
226 PRK06995 flhF flagellar biosyn 96.3 0.076 1.7E-06 54.6 13.9 90 178-277 256-346 (484)
227 COG3421 Uncharacterized protei 96.3 0.0054 1.2E-07 63.1 5.3 145 183-341 2-167 (812)
228 PF05621 TniB: Bacterial TniB 96.3 0.038 8.2E-07 53.1 10.7 120 179-335 62-186 (302)
229 TIGR03420 DnaA_homol_Hda DnaA 96.3 0.054 1.2E-06 49.7 11.6 19 177-195 37-55 (226)
230 COG0556 UvrB Helicase subunit 96.3 0.0098 2.1E-07 60.6 6.9 67 163-242 12-83 (663)
231 PRK13709 conjugal transfer nic 96.3 0.046 1E-06 64.0 13.3 64 163-232 967-1032(1747)
232 PRK05642 DNA replication initi 96.2 0.03 6.5E-07 52.2 9.6 35 179-223 46-80 (234)
233 COG0553 HepA Superfamily II DN 96.2 0.028 6E-07 62.1 10.8 135 161-304 336-486 (866)
234 TIGR02881 spore_V_K stage V sp 96.2 0.037 7.9E-07 52.5 10.1 17 179-195 43-59 (261)
235 PRK14088 dnaA chromosomal repl 96.2 0.05 1.1E-06 55.6 11.7 54 290-350 194-248 (440)
236 KOG0386 Chromatin remodeling c 96.2 0.0074 1.6E-07 65.3 5.8 156 163-341 394-556 (1157)
237 TIGR02760 TraI_TIGR conjugativ 96.2 0.042 9E-07 65.7 12.3 62 163-233 1019-1085(1960)
238 COG1419 FlhF Flagellar GTP-bin 96.2 0.02 4.3E-07 57.0 8.2 66 178-252 203-268 (407)
239 PRK12377 putative replication 96.1 0.11 2.3E-06 49.0 12.5 46 178-234 101-146 (248)
240 TIGR00362 DnaA chromosomal rep 96.1 0.049 1.1E-06 55.0 10.9 37 179-223 137-173 (405)
241 TIGR01425 SRP54_euk signal rec 96.0 0.075 1.6E-06 53.8 11.9 16 180-195 102-117 (429)
242 TIGR00631 uvrb excinuclease AB 96.0 0.042 9.1E-07 58.9 10.3 66 163-241 9-79 (655)
243 PF13173 AAA_14: AAA domain 95.9 0.035 7.6E-07 46.4 7.7 40 290-340 61-100 (128)
244 COG4626 Phage terminase-like p 95.9 0.098 2.1E-06 54.0 11.9 164 163-353 61-238 (546)
245 PRK14086 dnaA chromosomal repl 95.8 0.073 1.6E-06 56.2 11.0 49 289-344 376-425 (617)
246 PRK06731 flhF flagellar biosyn 95.8 0.17 3.7E-06 48.2 12.4 132 177-352 74-210 (270)
247 cd00984 DnaB_C DnaB helicase C 95.7 0.13 2.8E-06 47.8 11.3 142 176-337 11-171 (242)
248 TIGR00064 ftsY signal recognit 95.7 0.2 4.4E-06 47.8 12.7 20 179-198 73-92 (272)
249 COG1474 CDC6 Cdc6-related prot 95.7 0.15 3.2E-06 50.8 12.1 30 288-318 121-150 (366)
250 PRK08903 DnaA regulatory inact 95.6 0.089 1.9E-06 48.5 9.7 44 290-341 90-133 (227)
251 KOG1015 Transcription regulato 95.6 0.08 1.7E-06 57.4 10.1 151 160-319 676-848 (1567)
252 PRK11054 helD DNA helicase IV; 95.6 0.059 1.3E-06 58.1 9.3 70 162-239 195-264 (684)
253 TIGR00596 rad1 DNA repair prot 95.5 0.037 8E-07 60.5 7.8 81 267-355 8-90 (814)
254 PRK00771 signal recognition pa 95.5 0.11 2.3E-06 53.0 10.5 18 179-196 96-113 (437)
255 PRK00411 cdc6 cell division co 95.5 0.064 1.4E-06 53.8 9.0 25 179-204 56-80 (394)
256 PRK10919 ATP-dependent DNA hel 95.5 0.033 7.2E-07 60.0 7.2 69 163-239 2-70 (672)
257 PRK11823 DNA repair protein Ra 95.5 0.13 2.8E-06 52.7 11.2 52 177-239 79-130 (446)
258 PRK13894 conjugal transfer ATP 95.4 0.06 1.3E-06 52.6 8.1 67 153-229 124-191 (319)
259 PRK06904 replicative DNA helic 95.4 0.34 7.3E-06 50.0 13.8 151 177-343 220-387 (472)
260 PRK09183 transposase/IS protei 95.3 0.24 5.2E-06 47.0 11.8 21 175-195 99-119 (259)
261 TIGR03877 thermo_KaiC_1 KaiC d 95.3 0.082 1.8E-06 49.3 8.5 53 177-240 20-72 (237)
262 PRK14956 DNA polymerase III su 95.3 0.054 1.2E-06 55.6 7.7 18 180-197 42-59 (484)
263 TIGR03499 FlhF flagellar biosy 95.3 0.053 1.2E-06 52.0 7.4 19 178-196 194-212 (282)
264 TIGR03600 phage_DnaB phage rep 95.3 0.19 4E-06 51.1 11.8 146 176-338 192-353 (421)
265 PRK12726 flagellar biosynthesi 95.3 0.16 3.5E-06 50.6 10.8 22 178-199 206-227 (407)
266 PTZ00112 origin recognition co 95.3 0.23 5E-06 54.3 12.6 23 181-204 784-806 (1164)
267 PRK14723 flhF flagellar biosyn 95.3 0.1 2.2E-06 56.4 10.1 23 178-200 185-207 (767)
268 COG1435 Tdk Thymidine kinase [ 95.3 0.13 2.8E-06 46.2 9.1 104 178-317 4-108 (201)
269 PF03796 DnaB_C: DnaB-like hel 95.3 0.33 7.3E-06 45.7 12.7 144 178-339 19-180 (259)
270 CHL00181 cbbX CbbX; Provisiona 95.2 0.22 4.7E-06 48.0 11.2 18 178-195 59-76 (287)
271 PRK05973 replicative DNA helic 95.2 0.15 3.3E-06 47.6 9.8 83 145-239 22-114 (237)
272 PHA02544 44 clamp loader, smal 95.2 0.1 2.2E-06 50.7 9.1 40 140-194 17-59 (316)
273 PRK04195 replication factor C 95.2 0.18 3.9E-06 52.2 11.3 44 140-195 10-56 (482)
274 PRK05298 excinuclease ABC subu 95.2 0.12 2.6E-06 55.5 10.3 65 163-240 12-81 (652)
275 PF00004 AAA: ATPase family as 95.1 0.34 7.4E-06 39.9 10.9 14 181-194 1-14 (132)
276 PF05876 Terminase_GpA: Phage 95.1 0.06 1.3E-06 56.7 7.6 157 163-341 16-181 (557)
277 PRK12727 flagellar biosynthesi 95.1 0.18 3.8E-06 52.4 10.6 20 177-196 349-368 (559)
278 PRK08506 replicative DNA helic 95.1 0.32 6.8E-06 50.3 12.6 149 177-343 191-355 (472)
279 PRK10416 signal recognition pa 95.0 0.55 1.2E-05 45.9 13.6 62 289-352 195-257 (318)
280 PRK13833 conjugal transfer pro 95.0 0.094 2E-06 51.3 8.1 65 155-229 122-187 (323)
281 PRK12402 replication factor C 95.0 0.15 3.3E-06 49.7 9.7 16 180-195 38-53 (337)
282 PRK13342 recombination factor 94.9 0.2 4.3E-06 50.8 10.5 16 180-195 38-53 (413)
283 TIGR00959 ffh signal recogniti 94.9 0.41 8.9E-06 48.7 12.7 86 180-277 101-194 (428)
284 PRK08533 flagellar accessory p 94.9 0.4 8.7E-06 44.5 11.7 53 176-239 22-74 (230)
285 TIGR02880 cbbX_cfxQ probable R 94.9 0.32 7E-06 46.7 11.4 18 178-195 58-75 (284)
286 TIGR01074 rep ATP-dependent DN 94.9 0.07 1.5E-06 57.5 7.5 68 164-239 2-69 (664)
287 PHA03372 DNA packaging termina 94.8 0.39 8.3E-06 50.3 12.2 132 179-341 203-339 (668)
288 PRK08769 DNA polymerase III su 94.8 0.27 5.8E-06 48.1 10.6 44 161-205 2-52 (319)
289 PRK14964 DNA polymerase III su 94.8 0.73 1.6E-05 47.7 14.2 18 179-196 36-53 (491)
290 TIGR01075 uvrD DNA helicase II 94.7 0.068 1.5E-06 58.1 7.0 71 162-240 3-73 (715)
291 PRK12724 flagellar biosynthesi 94.7 0.41 8.8E-06 48.4 11.8 23 179-201 224-246 (432)
292 PHA00729 NTP-binding motif con 94.7 0.29 6.3E-06 45.3 10.0 15 180-194 19-33 (226)
293 TIGR02782 TrbB_P P-type conjug 94.7 0.15 3.3E-06 49.3 8.6 68 152-229 107-175 (299)
294 PRK10689 transcription-repair 94.7 0.33 7.2E-06 55.4 12.4 93 215-319 808-904 (1147)
295 TIGR03015 pepcterm_ATPase puta 94.7 0.5 1.1E-05 44.5 12.0 33 163-195 23-60 (269)
296 PRK05707 DNA polymerase III su 94.7 0.38 8.2E-06 47.3 11.3 41 163-204 3-47 (328)
297 cd01121 Sms Sms (bacterial rad 94.6 0.31 6.7E-06 48.7 10.8 104 177-319 81-193 (372)
298 TIGR02785 addA_Gpos recombinat 94.6 0.15 3.2E-06 58.8 9.7 122 164-301 2-126 (1232)
299 KOG1133 Helicase of the DEAD s 94.6 0.058 1.3E-06 56.6 5.6 44 163-206 15-62 (821)
300 PRK14721 flhF flagellar biosyn 94.5 0.17 3.7E-06 51.2 8.8 62 177-247 190-251 (420)
301 COG3973 Superfamily I DNA and 94.5 0.19 4.2E-06 52.3 9.0 95 144-242 185-286 (747)
302 KOG0738 AAA+-type ATPase [Post 94.5 0.6 1.3E-05 46.3 11.9 56 139-194 181-261 (491)
303 PRK05748 replicative DNA helic 94.5 0.62 1.3E-05 47.8 12.9 146 177-338 202-364 (448)
304 PRK14949 DNA polymerase III su 94.4 0.29 6.3E-06 53.7 10.7 16 181-196 41-56 (944)
305 KOG0344 ATP-dependent RNA heli 94.4 0.49 1.1E-05 49.0 11.6 97 187-300 366-466 (593)
306 KOG0991 Replication factor C, 94.4 0.14 2.9E-06 47.4 6.9 45 288-341 111-155 (333)
307 PRK07994 DNA polymerase III su 94.4 0.69 1.5E-05 49.5 13.2 16 181-196 41-56 (647)
308 TIGR03881 KaiC_arch_4 KaiC dom 94.4 0.59 1.3E-05 43.0 11.5 52 177-239 19-70 (229)
309 PRK06067 flagellar accessory p 94.3 0.95 2.1E-05 41.9 12.9 51 178-239 25-75 (234)
310 TIGR00580 mfd transcription-re 94.3 0.39 8.4E-06 53.6 11.7 80 215-302 659-742 (926)
311 PRK11773 uvrD DNA-dependent he 94.3 0.087 1.9E-06 57.4 6.6 71 162-240 8-78 (721)
312 PRK08840 replicative DNA helic 94.3 0.8 1.7E-05 47.2 13.3 152 176-343 215-382 (464)
313 TIGR02928 orc1/cdc6 family rep 94.3 0.1 2.3E-06 51.6 6.7 25 179-204 41-65 (365)
314 PF06745 KaiC: KaiC; InterPro 94.3 0.07 1.5E-06 49.2 5.0 53 177-239 18-70 (226)
315 PRK06645 DNA polymerase III su 94.2 0.47 1E-05 49.3 11.5 17 180-196 45-61 (507)
316 PRK07003 DNA polymerase III su 94.2 0.11 2.4E-06 55.9 6.9 16 180-195 40-55 (830)
317 TIGR00665 DnaB replicative DNA 94.2 0.57 1.2E-05 47.8 12.0 144 177-337 194-353 (434)
318 PLN03025 replication factor C 94.2 0.69 1.5E-05 45.1 12.1 17 179-195 35-51 (319)
319 COG4962 CpaF Flp pilus assembl 94.2 0.08 1.7E-06 51.6 5.3 63 160-233 154-217 (355)
320 PRK07004 replicative DNA helic 94.2 0.38 8.2E-06 49.5 10.6 149 177-342 212-376 (460)
321 KOG1001 Helicase-like transcri 94.2 0.22 4.7E-06 53.4 9.0 116 180-305 154-269 (674)
322 TIGR00631 uvrb excinuclease AB 94.1 0.68 1.5E-05 49.8 12.7 119 215-349 441-563 (655)
323 PF07728 AAA_5: AAA domain (dy 94.0 0.029 6.2E-07 47.4 1.8 15 180-194 1-15 (139)
324 PRK13341 recombination factor 94.0 0.43 9.3E-06 51.8 11.0 42 290-344 109-150 (725)
325 TIGR00643 recG ATP-dependent D 94.0 2.5 5.5E-05 45.3 16.9 93 215-319 447-551 (630)
326 PRK08006 replicative DNA helic 94.0 1.1 2.3E-05 46.4 13.4 151 177-343 223-389 (471)
327 PRK07764 DNA polymerase III su 93.9 0.13 2.9E-06 56.4 7.0 20 180-199 39-58 (824)
328 PRK12323 DNA polymerase III su 93.9 0.58 1.3E-05 49.8 11.3 40 289-337 123-162 (700)
329 PRK09111 DNA polymerase III su 93.8 0.86 1.9E-05 48.4 12.7 42 141-197 21-65 (598)
330 PF13177 DNA_pol3_delta2: DNA 93.8 1.8 3.9E-05 37.8 12.8 44 289-341 101-144 (162)
331 PRK06321 replicative DNA helic 93.8 0.85 1.8E-05 47.1 12.2 144 178-338 226-388 (472)
332 KOG1513 Nuclear helicase MOP-3 93.7 0.11 2.3E-06 55.5 5.5 158 163-346 264-461 (1300)
333 PRK14961 DNA polymerase III su 93.6 0.88 1.9E-05 45.3 11.7 16 180-195 40-55 (363)
334 PF03237 Terminase_6: Terminas 93.5 0.36 7.8E-06 47.2 8.9 102 182-303 1-110 (384)
335 PRK10436 hypothetical protein; 93.5 0.32 7E-06 50.0 8.6 39 165-204 203-243 (462)
336 PRK08691 DNA polymerase III su 93.5 0.8 1.7E-05 49.1 11.7 19 179-197 39-57 (709)
337 PRK08699 DNA polymerase III su 93.5 1 2.2E-05 44.2 11.7 31 165-195 3-38 (325)
338 PF13481 AAA_25: AAA domain; P 93.4 0.77 1.7E-05 40.8 10.1 63 177-240 31-93 (193)
339 PF14516 AAA_35: AAA-like doma 93.4 0.93 2E-05 44.5 11.4 130 166-319 18-157 (331)
340 PTZ00293 thymidine kinase; Pro 93.4 0.8 1.7E-05 41.9 10.0 39 178-226 4-42 (211)
341 PRK13851 type IV secretion sys 93.4 0.12 2.6E-06 51.1 5.0 46 173-229 157-202 (344)
342 TIGR01073 pcrA ATP-dependent D 93.3 0.2 4.3E-06 54.6 7.2 71 162-240 3-73 (726)
343 PRK14951 DNA polymerase III su 93.3 1.4 2.9E-05 47.1 13.1 18 180-197 40-57 (618)
344 PRK04328 hypothetical protein; 93.3 0.66 1.4E-05 43.6 9.8 53 177-240 22-74 (249)
345 PRK14955 DNA polymerase III su 93.3 2 4.3E-05 43.3 13.9 28 288-319 125-152 (397)
346 PRK00440 rfc replication facto 93.3 2.1 4.6E-05 41.2 13.8 16 180-195 40-55 (319)
347 PF05729 NACHT: NACHT domain 93.3 0.6 1.3E-05 40.0 8.9 24 181-205 3-26 (166)
348 KOG2228 Origin recognition com 93.2 1 2.3E-05 43.9 10.9 60 276-340 123-182 (408)
349 cd03115 SRP The signal recogni 93.2 3.4 7.3E-05 36.1 13.8 15 181-195 3-17 (173)
350 PRK08939 primosomal protein Dn 93.2 0.76 1.6E-05 44.7 10.3 26 178-204 156-181 (306)
351 PRK05636 replicative DNA helic 93.2 0.67 1.5E-05 48.2 10.5 149 178-344 265-429 (505)
352 COG2256 MGS1 ATPase related to 93.2 0.53 1.1E-05 46.9 9.1 16 180-195 50-65 (436)
353 cd01129 PulE-GspE PulE/GspE Th 93.2 0.34 7.4E-06 46.0 7.7 45 155-203 58-104 (264)
354 PRK05896 DNA polymerase III su 93.2 0.85 1.9E-05 48.2 11.2 17 179-195 39-55 (605)
355 PRK06964 DNA polymerase III su 93.2 2 4.4E-05 42.4 13.3 41 164-205 2-47 (342)
356 PRK13900 type IV secretion sys 93.2 0.28 6.1E-06 48.2 7.3 46 174-230 156-201 (332)
357 PRK14958 DNA polymerase III su 93.1 0.86 1.9E-05 47.5 11.2 17 180-196 40-56 (509)
358 PF01695 IstB_IS21: IstB-like 93.1 0.24 5.2E-06 44.1 6.2 46 176-232 45-90 (178)
359 PF01637 Arch_ATPase: Archaeal 93.1 0.029 6.2E-07 51.2 0.2 25 178-203 20-44 (234)
360 PRK14960 DNA polymerase III su 93.1 0.38 8.2E-06 51.3 8.5 17 180-196 39-55 (702)
361 KOG0331 ATP-dependent RNA heli 93.1 0.44 9.5E-06 49.2 8.7 72 215-296 340-415 (519)
362 COG2909 MalT ATP-dependent tra 93.0 0.29 6.3E-06 52.9 7.5 45 289-341 128-172 (894)
363 cd00561 CobA_CobO_BtuR ATP:cor 93.0 2.3 5.1E-05 37.1 12.0 52 288-347 93-146 (159)
364 COG5008 PilU Tfp pilus assembl 92.9 0.092 2E-06 49.4 3.3 38 140-196 107-145 (375)
365 PRK14962 DNA polymerase III su 92.9 0.81 1.8E-05 47.2 10.5 28 288-319 115-142 (472)
366 PRK08760 replicative DNA helic 92.9 1.2 2.6E-05 46.1 11.8 148 178-343 229-392 (476)
367 PRK14950 DNA polymerase III su 92.8 1.7 3.6E-05 46.3 13.1 28 288-319 118-145 (585)
368 PRK14963 DNA polymerase III su 92.8 0.47 1E-05 49.4 8.8 29 288-320 114-142 (504)
369 PRK09112 DNA polymerase III su 92.8 0.87 1.9E-05 45.2 10.3 31 174-205 38-71 (351)
370 COG0470 HolB ATPase involved i 92.8 0.64 1.4E-05 44.9 9.3 26 178-204 23-49 (325)
371 PRK05563 DNA polymerase III su 92.8 0.72 1.6E-05 48.7 10.1 19 179-197 39-57 (559)
372 KOG0732 AAA+-type ATPase conta 92.8 0.17 3.6E-06 56.1 5.5 54 139-195 260-316 (1080)
373 KOG0733 Nuclear AAA ATPase (VC 92.7 1 2.3E-05 47.1 10.7 52 140-194 186-239 (802)
374 KOG0058 Peptide exporter, ABC 92.7 0.29 6.4E-06 52.0 7.0 142 175-338 491-661 (716)
375 TIGR03878 thermo_KaiC_2 KaiC d 92.7 1.2 2.7E-05 42.1 10.7 38 177-224 35-72 (259)
376 COG0556 UvrB Helicase subunit 92.7 1.3 2.9E-05 45.6 11.2 123 215-353 445-571 (663)
377 KOG0742 AAA+-type ATPase [Post 92.7 0.32 7E-06 48.5 6.7 107 179-341 385-495 (630)
378 TIGR00678 holB DNA polymerase 92.6 2.1 4.5E-05 38.1 11.7 28 288-319 94-121 (188)
379 PF03969 AFG1_ATPase: AFG1-lik 92.6 1.7 3.8E-05 43.2 12.1 47 289-343 126-172 (362)
380 PRK14954 DNA polymerase III su 92.6 2.2 4.8E-05 45.6 13.4 28 288-319 125-152 (620)
381 PRK04537 ATP-dependent RNA hel 92.6 0.66 1.4E-05 49.2 9.6 75 215-299 256-334 (572)
382 TIGR02524 dot_icm_DotB Dot/Icm 92.5 0.26 5.7E-06 49.0 6.2 27 177-204 133-159 (358)
383 cd01393 recA_like RecA is a b 92.5 1.2 2.6E-05 40.8 10.2 45 178-226 19-63 (226)
384 PRK13764 ATPase; Provisional 92.5 0.29 6.2E-06 51.8 6.7 27 177-204 256-282 (602)
385 PTZ00454 26S protease regulato 92.5 0.54 1.2E-05 47.5 8.4 54 139-195 140-196 (398)
386 TIGR02538 type_IV_pilB type IV 92.5 0.45 9.7E-06 50.3 8.2 44 156-203 295-340 (564)
387 KOG0298 DEAD box-containing he 92.5 0.36 7.9E-06 54.0 7.5 157 177-346 373-557 (1394)
388 COG2804 PulE Type II secretory 92.5 0.23 5.1E-06 50.8 5.7 40 165-205 243-284 (500)
389 PRK05986 cob(I)alamin adenolsy 92.4 0.4 8.6E-06 43.2 6.6 52 288-347 113-166 (191)
390 PF05496 RuvB_N: Holliday junc 92.4 0.65 1.4E-05 42.9 8.0 15 180-194 52-66 (233)
391 TIGR02237 recomb_radB DNA repa 92.3 1.2 2.5E-05 40.4 9.8 39 177-225 11-49 (209)
392 PRK05595 replicative DNA helic 92.3 0.71 1.5E-05 47.3 9.2 149 178-344 201-365 (444)
393 COG1484 DnaC DNA replication p 92.3 0.33 7.1E-06 45.9 6.2 49 177-236 104-152 (254)
394 PRK10917 ATP-dependent DNA hel 92.3 5.7 0.00012 43.1 16.4 93 215-319 470-574 (681)
395 PRK14965 DNA polymerase III su 92.2 1.2 2.7E-05 47.2 11.1 18 180-197 40-57 (576)
396 PRK11192 ATP-dependent RNA hel 92.2 0.81 1.8E-05 46.6 9.4 72 215-296 244-319 (434)
397 PRK14959 DNA polymerase III su 92.1 1 2.2E-05 47.8 10.3 27 289-319 118-144 (624)
398 PRK07471 DNA polymerase III su 92.1 2.2 4.8E-05 42.5 12.2 25 180-205 43-67 (365)
399 KOG0333 U5 snRNP-like RNA heli 92.1 0.58 1.3E-05 47.9 7.9 71 215-295 516-590 (673)
400 COG2874 FlaH Predicted ATPases 92.1 2.4 5.2E-05 38.9 11.1 64 288-356 121-187 (235)
401 cd01125 repA Hexameric Replica 92.0 1.5 3.3E-05 40.7 10.4 44 180-223 3-48 (239)
402 cd01126 TraG_VirD4 The TraG/Tr 92.0 0.15 3.2E-06 51.2 3.7 48 180-239 1-48 (384)
403 KOG0744 AAA+-type ATPase [Post 92.0 0.63 1.4E-05 45.1 7.6 139 178-337 177-353 (423)
404 COG1197 Mfd Transcription-repa 92.0 1.4 3E-05 49.5 11.3 142 167-320 731-899 (1139)
405 PRK14952 DNA polymerase III su 92.0 0.96 2.1E-05 47.9 9.8 17 181-197 38-54 (584)
406 PRK04837 ATP-dependent RNA hel 91.9 0.76 1.7E-05 46.6 8.9 73 216-298 255-331 (423)
407 PRK14957 DNA polymerase III su 91.9 2.3 4.9E-05 44.7 12.3 17 180-196 40-56 (546)
408 TIGR02533 type_II_gspE general 91.8 0.47 1E-05 49.2 7.2 45 155-203 220-266 (486)
409 TIGR00708 cobA cob(I)alamin ad 91.8 2.2 4.8E-05 37.8 10.5 52 288-347 95-148 (173)
410 PRK07993 DNA polymerase III su 91.8 1.5 3.2E-05 43.2 10.4 41 164-205 3-50 (334)
411 cd03239 ABC_SMC_head The struc 91.7 0.21 4.5E-06 44.5 4.0 42 289-337 115-156 (178)
412 PRK10867 signal recognition pa 91.7 4.8 0.0001 41.1 14.2 86 180-277 102-195 (433)
413 TIGR02525 plasmid_TraJ plasmid 91.7 0.54 1.2E-05 47.0 7.2 27 178-205 149-175 (372)
414 PHA02535 P terminase ATPase su 91.7 2.1 4.6E-05 45.0 11.8 85 148-241 123-207 (581)
415 KOG2170 ATPase of the AAA+ sup 91.6 0.64 1.4E-05 44.6 7.2 63 290-354 178-240 (344)
416 KOG0741 AAA+-type ATPase [Post 91.6 2.5 5.4E-05 43.7 11.7 146 145-345 493-655 (744)
417 PF12846 AAA_10: AAA-like doma 91.6 0.3 6.4E-06 46.4 5.2 26 178-204 1-26 (304)
418 PRK14948 DNA polymerase III su 91.5 1.1 2.5E-05 47.8 9.8 27 289-319 120-146 (620)
419 TIGR02868 CydC thiol reductant 91.4 0.33 7.2E-06 50.7 5.8 31 288-318 486-516 (529)
420 PF02534 T4SS-DNA_transf: Type 91.4 0.26 5.6E-06 50.7 4.9 49 179-239 45-93 (469)
421 KOG2036 Predicted P-loop ATPas 91.2 1.2 2.6E-05 47.1 9.2 62 165-235 255-323 (1011)
422 PF05894 Podovirus_Gp16: Podov 91.2 3.3 7.2E-05 40.0 11.5 130 182-337 21-159 (333)
423 PRK14969 DNA polymerase III su 91.1 2 4.4E-05 45.0 11.2 17 180-196 40-56 (527)
424 PF00265 TK: Thymidine kinase; 91.0 0.88 1.9E-05 40.5 7.2 37 181-227 4-40 (176)
425 TIGR00416 sms DNA repair prote 91.0 1.7 3.6E-05 44.8 10.2 52 177-239 93-144 (454)
426 PRK09165 replicative DNA helic 91.0 1.6 3.5E-05 45.4 10.2 157 178-344 217-397 (497)
427 PHA02542 41 41 helicase; Provi 90.9 1.3 2.8E-05 45.8 9.3 46 290-338 301-353 (473)
428 PF00437 T2SE: Type II/IV secr 90.8 0.36 7.9E-06 45.7 4.9 45 175-229 124-168 (270)
429 PRK06871 DNA polymerase III su 90.8 3.2 7E-05 40.6 11.6 41 164-205 3-50 (325)
430 PTZ00110 helicase; Provisional 90.7 1.2 2.7E-05 46.8 9.2 73 215-297 376-452 (545)
431 COG0513 SrmB Superfamily II DN 90.7 1.2 2.6E-05 46.6 9.0 137 142-296 185-347 (513)
432 TIGR01420 pilT_fam pilus retra 90.7 0.67 1.4E-05 45.8 6.8 43 177-228 121-163 (343)
433 cd01394 radB RadB. The archaea 90.6 1.9 4.1E-05 39.3 9.4 36 178-223 19-54 (218)
434 PF05707 Zot: Zonular occluden 90.6 0.64 1.4E-05 41.8 6.0 55 290-349 79-135 (193)
435 PF01443 Viral_helicase1: Vira 90.5 0.36 7.8E-06 44.4 4.5 14 181-194 1-14 (234)
436 COG1132 MdlB ABC-type multidru 90.5 0.74 1.6E-05 48.6 7.4 32 288-319 481-512 (567)
437 PRK06090 DNA polymerase III su 90.5 3 6.4E-05 40.8 10.9 42 163-205 3-51 (319)
438 PRK13897 type IV secretion sys 90.4 0.34 7.5E-06 51.4 4.7 49 179-239 159-207 (606)
439 TIGR02012 tigrfam_recA protein 90.4 0.83 1.8E-05 44.6 7.0 91 177-303 54-146 (321)
440 KOG0060 Long-chain acyl-CoA tr 90.4 0.28 6.2E-06 50.8 3.8 45 273-318 572-616 (659)
441 KOG0734 AAA+-type ATPase conta 90.3 1.2 2.6E-05 46.1 8.1 69 269-344 376-453 (752)
442 COG0552 FtsY Signal recognitio 90.3 6.6 0.00014 38.4 12.9 137 181-353 142-283 (340)
443 PRK04841 transcriptional regul 90.3 2.4 5.3E-05 47.1 11.6 44 290-341 121-164 (903)
444 PRK08451 DNA polymerase III su 90.2 1.4 3.1E-05 46.1 8.9 40 288-336 115-154 (535)
445 PRK14953 DNA polymerase III su 90.1 3.7 7.9E-05 42.6 11.9 28 288-319 117-144 (486)
446 PRK07940 DNA polymerase III su 90.1 2.2 4.8E-05 43.0 10.0 17 179-195 37-53 (394)
447 TIGR00635 ruvB Holliday juncti 90.1 0.68 1.5E-05 44.6 6.2 17 179-195 31-47 (305)
448 KOG0733 Nuclear AAA ATPase (VC 90.0 0.72 1.6E-05 48.3 6.4 68 270-343 585-659 (802)
449 TIGR00763 lon ATP-dependent pr 90.0 0.88 1.9E-05 50.0 7.6 19 177-195 346-364 (775)
450 CHL00176 ftsH cell division pr 90.0 0.79 1.7E-05 49.1 7.0 17 179-195 217-233 (638)
451 PRK05298 excinuclease ABC subu 90.0 4.6 0.0001 43.5 12.9 113 215-343 445-561 (652)
452 PRK09435 membrane ATPase/prote 89.9 10 0.00022 37.3 14.1 87 269-355 174-260 (332)
453 PRK09354 recA recombinase A; P 89.9 1.4 2.9E-05 43.6 8.0 44 177-230 59-102 (349)
454 PRK09087 hypothetical protein; 89.8 1.3 2.9E-05 40.9 7.7 40 293-341 90-129 (226)
455 PRK10590 ATP-dependent RNA hel 89.8 1.7 3.6E-05 44.7 9.1 72 215-296 244-319 (456)
456 COG1219 ClpX ATP-dependent pro 89.8 1.2 2.5E-05 43.3 7.2 141 179-340 98-259 (408)
457 PRK06749 replicative DNA helic 89.6 4.1 8.8E-05 41.6 11.6 50 291-344 300-354 (428)
458 cd01130 VirB11-like_ATPase Typ 89.5 0.54 1.2E-05 42.0 4.6 32 164-195 10-42 (186)
459 TIGR01243 CDC48 AAA family ATP 89.5 2.1 4.6E-05 46.8 10.1 52 140-194 174-228 (733)
460 PRK09376 rho transcription ter 89.4 1.2 2.7E-05 44.6 7.4 62 140-205 130-195 (416)
461 TIGR02397 dnaX_nterm DNA polym 89.4 3.7 8E-05 40.3 10.9 25 179-204 37-61 (355)
462 PRK14971 DNA polymerase III su 89.4 3.1 6.8E-05 44.4 11.0 28 288-319 119-146 (614)
463 PRK13695 putative NTPase; Prov 89.3 7.3 0.00016 34.1 11.8 17 180-196 2-18 (174)
464 TIGR01243 CDC48 AAA family ATP 89.3 0.81 1.8E-05 50.0 6.6 53 140-195 449-504 (733)
465 cd00983 recA RecA is a bacter 89.2 1.3 2.8E-05 43.4 7.3 44 177-230 54-97 (325)
466 PRK11034 clpA ATP-dependent Cl 89.1 1.5 3.2E-05 48.0 8.4 18 178-195 207-224 (758)
467 TIGR00767 rho transcription te 89.1 1.2 2.5E-05 44.9 6.9 29 175-204 165-193 (415)
468 PLN03187 meiotic recombination 89.0 19 0.0004 35.7 15.3 28 137-164 28-55 (344)
469 PHA00012 I assembly protein 88.9 4.9 0.00011 39.3 10.8 56 287-350 78-138 (361)
470 PRK06647 DNA polymerase III su 88.9 4.9 0.00011 42.5 11.8 28 288-319 117-144 (563)
471 COG3267 ExeA Type II secretory 88.9 3.6 7.8E-05 38.7 9.5 30 173-203 45-75 (269)
472 TIGR00614 recQ_fam ATP-depende 88.8 1.4 3.1E-05 45.4 7.8 75 215-299 225-303 (470)
473 PRK11776 ATP-dependent RNA hel 88.8 2.1 4.6E-05 43.9 9.0 74 216-299 242-319 (460)
474 cd01127 TrwB Bacterial conjuga 88.7 0.42 9.1E-06 48.4 3.7 33 172-205 36-68 (410)
475 COG0630 VirB11 Type IV secreto 88.6 0.66 1.4E-05 45.2 4.9 75 138-228 107-182 (312)
476 PRK03992 proteasome-activating 88.6 3.5 7.7E-05 41.4 10.2 52 140-194 127-181 (389)
477 PF10412 TrwB_AAD_bind: Type I 88.5 0.48 1E-05 47.6 3.9 29 176-205 13-41 (386)
478 PRK07133 DNA polymerase III su 88.3 2 4.3E-05 46.5 8.5 27 289-319 117-143 (725)
479 KOG0739 AAA+-type ATPase [Post 88.3 7.9 0.00017 37.4 11.5 57 290-346 225-284 (439)
480 TIGR01241 FtsH_fam ATP-depende 88.3 1.2 2.7E-05 46.2 7.0 54 139-195 50-105 (495)
481 PRK11057 ATP-dependent DNA hel 88.2 2 4.3E-05 45.9 8.6 73 215-297 235-311 (607)
482 TIGR02203 MsbA_lipidA lipid A 88.2 1.1 2.3E-05 47.3 6.6 32 288-319 485-516 (571)
483 TIGR02204 MsbA_rel ABC transpo 88.2 0.97 2.1E-05 47.7 6.3 31 288-318 492-522 (576)
484 KOG0745 Putative ATP-dependent 88.2 1.4 3.1E-05 44.4 6.8 128 179-318 227-375 (564)
485 PRK07773 replicative DNA helic 88.1 4.1 8.9E-05 45.6 11.2 143 178-337 217-375 (886)
486 TIGR03819 heli_sec_ATPase heli 88.0 1.2 2.6E-05 44.0 6.3 64 153-229 154-218 (340)
487 PHA00149 DNA encapsidation pro 87.9 6.9 0.00015 37.4 10.8 136 182-340 21-161 (331)
488 cd00079 HELICc Helicase superf 87.8 3.2 6.9E-05 33.7 7.9 76 215-300 27-106 (131)
489 KOG3089 Predicted DEAD-box-con 87.7 0.56 1.2E-05 42.7 3.3 34 265-298 195-228 (271)
490 PRK13850 type IV secretion sys 87.6 0.58 1.3E-05 50.3 4.0 49 179-239 140-188 (670)
491 PF03266 NTPase_1: NTPase; In 87.6 0.42 9.1E-06 42.2 2.5 25 180-205 1-25 (168)
492 KOG0330 ATP-dependent RNA heli 87.5 2.3 4.9E-05 42.3 7.6 71 215-295 299-373 (476)
493 PRK01297 ATP-dependent RNA hel 87.5 2.8 6.1E-05 43.2 9.0 73 216-298 335-411 (475)
494 COG0714 MoxR-like ATPases [Gen 87.3 1.4 2.9E-05 43.3 6.2 24 171-194 36-59 (329)
495 KOG0737 AAA+-type ATPase [Post 87.3 4.5 9.7E-05 40.0 9.5 54 139-195 87-144 (386)
496 TIGR03743 SXT_TraD conjugative 87.2 1.4 3E-05 47.2 6.6 54 178-241 176-231 (634)
497 KOG2373 Predicted mitochondria 87.2 1.1 2.4E-05 43.8 5.3 47 178-231 273-319 (514)
498 TIGR03375 type_I_sec_LssB type 87.2 1 2.3E-05 48.8 5.8 32 288-319 617-648 (694)
499 PRK13767 ATP-dependent helicas 87.1 3.2 7E-05 46.3 9.7 77 216-298 284-366 (876)
500 PF04665 Pox_A32: Poxvirus A32 87.1 0.89 1.9E-05 42.5 4.5 35 180-224 15-49 (241)
No 1
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-46 Score=376.20 Aligned_cols=244 Identities=29% Similarity=0.418 Sum_probs=217.2
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEE
Q 015712 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIV 221 (402)
Q Consensus 142 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lv 221 (402)
.|++++|++.++.+|...||..|||||+++||.++.|+|+++.|.|||||||+|++|++.++..... ....+.+|++||
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~-~~~~~~~P~vLV 170 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQG-KLSRGDGPIVLV 170 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccc-cccCCCCCeEEE
Confidence 8999999999999999999999999999999999999999999999999999999999999986311 112557999999
Q ss_pred EcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCc
Q 015712 222 LCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 301 (402)
Q Consensus 222 l~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~ 301 (402)
|+||||||.|+...+..++..++++++|++||.+...|.+.+.++++|+|||||||+++++.+.+++++|.|+||||||+
T Consensus 171 L~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADr 250 (519)
T KOG0331|consen 171 LAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADR 250 (519)
T ss_pred EcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhccccccCCcee--eeeeecccceEEeecc
Q 015712 302 LFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAGKVT--AMLLEMDQAEVFDLTE 379 (402)
Q Consensus 302 ~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~~~~~~~~~--~~~~~v~q~~~~~~~e 379 (402)
|+|+||.++|+.|+..++. +..|++++|||||.++..++..|+.+|..+.++... ...-++.|...++-
T Consensus 251 MldmGFe~qI~~Il~~i~~-------~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~-- 321 (519)
T KOG0331|consen 251 MLDMGFEPQIRKILSQIPR-------PDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCD-- 321 (519)
T ss_pred hhccccHHHHHHHHHhcCC-------CcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcC--
Confidence 9999999999999999953 456999999999999999999999999988777553 44555666544433
Q ss_pred cHHHHHHHHHHHHhhcc
Q 015712 380 SQDALKKKVVEAMDSLH 396 (402)
Q Consensus 380 ~~~~~~~~l~~~l~~l~ 396 (402)
..++..+|..+|....
T Consensus 322 -~~~K~~~l~~lL~~~~ 337 (519)
T KOG0331|consen 322 -ETAKLRKLGKLLEDIS 337 (519)
T ss_pred -HHHHHHHHHHHHHHHh
Confidence 3556666666666553
No 2
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.4e-46 Score=352.89 Aligned_cols=242 Identities=26% Similarity=0.374 Sum_probs=224.2
Q ss_pred CcccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCC
Q 015712 136 NAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPM 215 (402)
Q Consensus 136 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~ 215 (402)
..+...+|.+||+.+.+++++.+.||..||+||+++||.++.|+|+|+.|.||||||.+|++||++.++..+ .
T Consensus 56 ~~e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p-------~ 128 (476)
T KOG0330|consen 56 TDESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEP-------K 128 (476)
T ss_pred hhhhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCC-------C
Confidence 345578899999999999999999999999999999999999999999999999999999999999999843 5
Q ss_pred CCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhh-cCCCCCCCeeEE
Q 015712 216 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIE-DRNVSCDDIRYV 294 (402)
Q Consensus 216 ~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~-~~~~~l~~l~~l 294 (402)
.+++|||+||||||.||...++.++...|++++++.||.+...|...+.+.++|||||||+|++|+. .+.+++..++|+
T Consensus 129 ~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~L 208 (476)
T KOG0330|consen 129 LFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFL 208 (476)
T ss_pred CceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHH
Confidence 6999999999999999999999999999999999999999999999999999999999999999999 488999999999
Q ss_pred EEcCCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhccccccCCceeeeeeecccceE
Q 015712 295 VLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAGKVTAMLLEMDQAEV 374 (402)
Q Consensus 295 VlDEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~~~~~~~~~~~~~~v~q~~~ 374 (402)
|+||||+++|+.|.+.+..|+..++ ..+|+++||||||..+.++.+.-+.+|..+.++....++..+.|.+.
T Consensus 209 VlDEADrlLd~dF~~~ld~ILk~ip--------~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~yl 280 (476)
T KOG0330|consen 209 VLDEADRLLDMDFEEELDYILKVIP--------RERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYL 280 (476)
T ss_pred hhchHHhhhhhhhHHHHHHHHHhcC--------ccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheE
Confidence 9999999999999999999999998 48899999999999999999999999999999999999999999999
Q ss_pred EeecccHHHHHHHHHHHHhhc
Q 015712 375 FDLTESQDALKKKVVEAMDSL 395 (402)
Q Consensus 375 ~~~~e~~~~~~~~l~~~l~~l 395 (402)
|.... .+...|+.+|+.+
T Consensus 281 fv~~k---~K~~yLV~ll~e~ 298 (476)
T KOG0330|consen 281 FVPGK---DKDTYLVYLLNEL 298 (476)
T ss_pred ecccc---ccchhHHHHHHhh
Confidence 86554 3344555555543
No 3
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.1e-46 Score=360.74 Aligned_cols=223 Identities=28% Similarity=0.415 Sum_probs=208.0
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeE
Q 015712 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRA 219 (402)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 219 (402)
..+|.+|+|+..|++++..+||..|||||..+||..+-|+|++.||.||||||.||++|+|++++-.+. .....++
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk----~~~~TRV 255 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPK----KVAATRV 255 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcc----cCcceeE
Confidence 568999999999999999999999999999999999999999999999999999999999999986543 2345699
Q ss_pred EEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhc-CCCCCCCeeEEEEcC
Q 015712 220 IVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIED-RNVSCDDIRYVVLDE 298 (402)
Q Consensus 220 Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~-~~~~l~~l~~lVlDE 298 (402)
||||||||||.|++.+.+.++.++.+.+++++||.+...|...++.++||||+|||||.+|+.+ -.++++++..+|+||
T Consensus 256 LVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDE 335 (691)
T KOG0338|consen 256 LVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDE 335 (691)
T ss_pred EEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEech
Confidence 9999999999999999999999999999999999999999999999999999999999999988 478999999999999
Q ss_pred CCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhccccccCCceeeeeeecccceE
Q 015712 299 ADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAGKVTAMLLEMDQAEV 374 (402)
Q Consensus 299 ad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~~~~~~~~~~~~~~v~q~~~ 374 (402)
||+||+.||.+++..|++.++. ++|+++|||||+..|.++++--|+.|+++.+++-........|..+
T Consensus 336 ADRMLeegFademnEii~lcpk--------~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFi 403 (691)
T KOG0338|consen 336 ADRMLEEGFADEMNEIIRLCPK--------NRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFI 403 (691)
T ss_pred HHHHHHHHHHHHHHHHHHhccc--------cccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHh
Confidence 9999999999999999999984 7899999999999999999999999999988777777777777644
No 4
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.7e-43 Score=362.71 Aligned_cols=239 Identities=26% Similarity=0.381 Sum_probs=212.7
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEE
Q 015712 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAI 220 (402)
Q Consensus 141 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~L 220 (402)
..|++|+|++.+++++.++||..|||||..+||.++.|+|++++|+||||||++|++|+++.+.... ......+|
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~-----~~~~~~aL 103 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSV-----ERKYVSAL 103 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhccc-----ccCCCceE
Confidence 6799999999999999999999999999999999999999999999999999999999999977421 01111299
Q ss_pred EEcCchHHHHHHHHHHHHhhccC-CcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCC
Q 015712 221 VLCTTEESADQGFHMAKFISHCA-RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 299 (402)
Q Consensus 221 vl~PtreLa~Qi~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEa 299 (402)
||+||||||.|+++.+..++.+. ++++++++||.+...+...++.+++|||||||||++|+.++.+++.+++++|+|||
T Consensus 104 il~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEA 183 (513)
T COG0513 104 ILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEA 183 (513)
T ss_pred EECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccH
Confidence 99999999999999999999998 79999999999999999999989999999999999999999999999999999999
Q ss_pred CccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhccccccCCceee--eeeecccceEEee
Q 015712 300 DTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAGKVTA--MLLEMDQAEVFDL 377 (402)
Q Consensus 300 d~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~~~~~~~~~~--~~~~v~q~~~~~~ 377 (402)
|+|+|+||.+++..|+..++. +.|+++||||+|..+..+++.++++|..+.+..... ....+.|.++.+.
T Consensus 184 DrmLd~Gf~~~i~~I~~~~p~--------~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~ 255 (513)
T COG0513 184 DRMLDMGFIDDIEKILKALPP--------DRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVE 255 (513)
T ss_pred hhhhcCCCHHHHHHHHHhCCc--------ccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeC
Confidence 999999999999999999983 789999999999999999999999998877663333 7788888877654
Q ss_pred cccHHHHHHHHHHHHhh
Q 015712 378 TESQDALKKKVVEAMDS 394 (402)
Q Consensus 378 ~e~~~~~~~~l~~~l~~ 394 (402)
.. +++...|..+|+.
T Consensus 256 ~~--~~k~~~L~~ll~~ 270 (513)
T COG0513 256 SE--EEKLELLLKLLKD 270 (513)
T ss_pred CH--HHHHHHHHHHHhc
Confidence 44 3466666666654
No 5
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-43 Score=344.51 Aligned_cols=251 Identities=24% Similarity=0.378 Sum_probs=234.1
Q ss_pred cCCCcccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCC
Q 015712 133 SGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPM 212 (402)
Q Consensus 133 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~ 212 (402)
..+.+.++++|..+|+++.|+.++...-|++|||+|++++|..+.|+|++..|.||||||.||+.|++..+...+...
T Consensus 215 g~s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~-- 292 (731)
T KOG0339|consen 215 GSSPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELK-- 292 (731)
T ss_pred cCCCCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhc--
Confidence 456678899999999999999999999999999999999999999999999999999999999999999998765543
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCee
Q 015712 213 KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIR 292 (402)
Q Consensus 213 ~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~ 292 (402)
.+.+|.+|||||||+||.||+..++.|++..+++++++|||.+..+|...|..++.|||||||||++++..+..++.++.
T Consensus 293 ~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS 372 (731)
T KOG0339|consen 293 PGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVS 372 (731)
T ss_pred CCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeee
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhccccccCCceeeeeeecccc
Q 015712 293 YVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAGKVTAMLLEMDQA 372 (402)
Q Consensus 293 ~lVlDEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~~~~~~~~~~~~~~v~q~ 372 (402)
||||||||+|+++||.+++..|...+. +++|+|+|||||+..+..+++.+|.+|+++..+.+.....++.|.
T Consensus 373 ~LV~DEadrmfdmGfe~qVrSI~~hir--------pdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~ 444 (731)
T KOG0339|consen 373 YLVLDEADRMFDMGFEPQVRSIKQHIR--------PDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQT 444 (731)
T ss_pred EEEEechhhhhccccHHHHHHHHhhcC--------CcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhhe
Confidence 999999999999999999999999986 699999999999999999999999999999999999999999999
Q ss_pred eEEeecccHHHHHHHHHHHHhhc
Q 015712 373 EVFDLTESQDALKKKVVEAMDSL 395 (402)
Q Consensus 373 ~~~~~~e~~~~~~~~l~~~l~~l 395 (402)
+.++..+ +.+...|++.|.++
T Consensus 445 V~V~~s~--~~Kl~wl~~~L~~f 465 (731)
T KOG0339|consen 445 VSVCPSE--EKKLNWLLRHLVEF 465 (731)
T ss_pred eeeccCc--HHHHHHHHHHhhhh
Confidence 8877666 66666666666654
No 6
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=1.2e-42 Score=338.89 Aligned_cols=262 Identities=26% Similarity=0.358 Sum_probs=237.3
Q ss_pred CCcccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCC--C
Q 015712 135 SNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLP--M 212 (402)
Q Consensus 135 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~--~ 212 (402)
.-+.++.+|++.++|..+++.+.+.||..|+|||+.+||..++.+|+|++|.||||||++|++|++..+..-+.... .
T Consensus 239 ~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en 318 (673)
T KOG0333|consen 239 RLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLEN 318 (673)
T ss_pred CCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhh
Confidence 34678999999999999999999999999999999999999999999999999999999999999999987653322 2
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCee
Q 015712 213 KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIR 292 (402)
Q Consensus 213 ~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~ 292 (402)
...||+++||+|||+||+||...-..+++..+++++.++||.+..++.-.+..||+|+|+|||+|++.|.++.+.++++.
T Consensus 319 ~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qct 398 (673)
T KOG0333|consen 319 NIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCT 398 (673)
T ss_pred cccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCc
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCccccCCCHHHHHHHHHHhhhhhcccC-----C------------CCceEEEEeeccCchhHHHHHHHhhccc
Q 015712 293 YVVLDEADTLFDRGFGPEISKILNPLKDSALKSN-----G------------QGFQTILVTAAIAEMLGEQLSSLMECLE 355 (402)
Q Consensus 293 ~lVlDEad~~l~~gf~~~i~~il~~l~~~~~~~~-----~------------~~~q~i~~SATl~~~v~~~~~~~l~~~~ 355 (402)
|||+||||+|+|+||.+++..||..++....++. + .-.|+++||||||+.+..+++.||++|.
T Consensus 399 yvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv 478 (673)
T KOG0333|consen 399 YVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPV 478 (673)
T ss_pred eEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCe
Confidence 9999999999999999999999999987654321 1 1289999999999999999999999999
Q ss_pred cccCCceeeeeeecccceEEeecccHHHHHHHHHHHHhhccccCCC
Q 015712 356 RDNAGKVTAMLLEMDQAEVFDLTESQDALKKKVVEAMDSLHLSAPG 401 (402)
Q Consensus 356 ~~~~~~~~~~~~~v~q~~~~~~~e~~~~~~~~l~~~l~~l~~~~p~ 401 (402)
.++++........+.|.+.. ..+ +++.++|.++|.+. |.|+
T Consensus 479 ~vtig~~gk~~~rveQ~v~m-~~e--d~k~kkL~eil~~~--~~pp 519 (673)
T KOG0333|consen 479 VVTIGSAGKPTPRVEQKVEM-VSE--DEKRKKLIEILESN--FDPP 519 (673)
T ss_pred EEEeccCCCCccchheEEEE-ecc--hHHHHHHHHHHHhC--CCCC
Confidence 99999999999999998654 444 67799999999988 4443
No 7
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=1e-43 Score=335.42 Aligned_cols=255 Identities=26% Similarity=0.454 Sum_probs=234.1
Q ss_pred cCCCcccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCC
Q 015712 133 SGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPM 212 (402)
Q Consensus 133 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~ 212 (402)
.+..+.++.+|.++.+|..+++.|++.|+..|||||.+.+|.+++|+|+|..|-||||||+.|.+|++...+......+.
T Consensus 162 Gd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf 241 (610)
T KOG0341|consen 162 GDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPF 241 (610)
T ss_pred CCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCcc
Confidence 34567789999999999999999999999999999999999999999999999999999999999999998887776666
Q ss_pred -CCCCCeEEEEcCchHHHHHHHHHHHHhhcc------CCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCC
Q 015712 213 -KPMHPRAIVLCTTEESADQGFHMAKFISHC------ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRN 285 (402)
Q Consensus 213 -~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~------~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~ 285 (402)
.+.||..||+||+||||.|.+..+..+... ..+++++++||.+..+|...++.|++|+|+|||||.++|....
T Consensus 242 ~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~ 321 (610)
T KOG0341|consen 242 ARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKI 321 (610)
T ss_pred ccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhh
Confidence 678999999999999999999988766443 3478999999999999999999999999999999999999999
Q ss_pred CCCCCeeEEEEcCCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhccccccCCceeee
Q 015712 286 VSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAGKVTAM 365 (402)
Q Consensus 286 ~~l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~~~~~~~~~~~ 365 (402)
++++-++||++||||+|+|+||.++++.|+..++. .+|+++||||||..++.+++.-+..|..+++++..+.
T Consensus 322 ~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~--------QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAA 393 (610)
T KOG0341|consen 322 MSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKG--------QRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAA 393 (610)
T ss_pred ccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhh--------hhheeeeeccccHHHHHHHHhhcccceEEeccccccc
Confidence 99999999999999999999999999999999984 6799999999999999999999999999999999999
Q ss_pred eeecccceEEeecccHHHHHHHHHHHHhhccccCCC
Q 015712 366 LLEMDQAEVFDLTESQDALKKKVVEAMDSLHLSAPG 401 (402)
Q Consensus 366 ~~~v~q~~~~~~~e~~~~~~~~l~~~l~~l~~~~p~ 401 (402)
.++|.|.+.|+.. ..+++.+|++|+-+.||
T Consensus 394 sldViQevEyVkq------EaKiVylLeCLQKT~Pp 423 (610)
T KOG0341|consen 394 SLDVIQEVEYVKQ------EAKIVYLLECLQKTSPP 423 (610)
T ss_pred chhHHHHHHHHHh------hhhhhhHHHHhccCCCc
Confidence 9999998666322 35788999999888876
No 8
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=2.7e-42 Score=338.05 Aligned_cols=238 Identities=25% Similarity=0.362 Sum_probs=212.5
Q ss_pred hcccCCCcccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhccc
Q 015712 130 EKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEAL 209 (402)
Q Consensus 130 ~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~ 209 (402)
..+.......+..|.+|+|+..+.++|++.+|..+|.||+.+||..+.|+|+|+.|.||||||+||++|+++.|.+..+.
T Consensus 58 ~ky~ei~~~~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs 137 (758)
T KOG0343|consen 58 QKYAEIDSTTIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWS 137 (758)
T ss_pred HHHHHhhhhhhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCC
Confidence 34444445667899999999999999999999999999999999999999999999999999999999999999987654
Q ss_pred CCCCCCCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhc-CCCCC
Q 015712 210 LPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIED-RNVSC 288 (402)
Q Consensus 210 ~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~-~~~~l 288 (402)
...|.-||||+||||||.|++.++..++++.++.+++++||.........++ +++|||||||||++|+.. -.++.
T Consensus 138 ---~~DGlGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~-~mNILVCTPGRLLQHmde~~~f~t 213 (758)
T KOG0343|consen 138 ---PTDGLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERIS-QMNILVCTPGRLLQHMDENPNFST 213 (758)
T ss_pred ---CCCCceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhh-cCCeEEechHHHHHHhhhcCCCCC
Confidence 4478899999999999999999999999999999999999999777666554 489999999999999986 46788
Q ss_pred CCeeEEEEcCCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhccccccCC--ceeeee
Q 015712 289 DDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAG--KVTAML 366 (402)
Q Consensus 289 ~~l~~lVlDEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~~~~~~--~~~~~~ 366 (402)
.++.+||+||||+|+|+||...+..|+..|+ +.+|+++||||-+..|.++++.-+++|..+.+. .+.++.
T Consensus 214 ~~lQmLvLDEADR~LDMGFk~tL~~Ii~~lP--------~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP 285 (758)
T KOG0343|consen 214 SNLQMLVLDEADRMLDMGFKKTLNAIIENLP--------KKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATP 285 (758)
T ss_pred CcceEEEeccHHHHHHHhHHHHHHHHHHhCC--------hhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccCh
Confidence 9999999999999999999999999999998 478999999999999999999999999987554 445667
Q ss_pred eecccceEEeecc
Q 015712 367 LEMDQAEVFDLTE 379 (402)
Q Consensus 367 ~~v~q~~~~~~~e 379 (402)
....|.|+.+..+
T Consensus 286 ~~L~Q~y~~v~l~ 298 (758)
T KOG0343|consen 286 SNLQQSYVIVPLE 298 (758)
T ss_pred hhhhheEEEEehh
Confidence 7778887776554
No 9
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5e-42 Score=312.55 Aligned_cols=246 Identities=24% Similarity=0.355 Sum_probs=225.6
Q ss_pred CCcccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCC
Q 015712 135 SNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKP 214 (402)
Q Consensus 135 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~ 214 (402)
....++.+|+++||.+++++++...||.+|+.||+.||+++++|+|+|++|..|+|||.+|.+.+++.+.-. .
T Consensus 21 ~~~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~-------~ 93 (400)
T KOG0328|consen 21 EKVKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDIS-------V 93 (400)
T ss_pred cCcccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccc-------c
Confidence 445678899999999999999999999999999999999999999999999999999999999999877542 3
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEE
Q 015712 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYV 294 (402)
Q Consensus 215 ~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~l 294 (402)
+..++|||+||||||.|+.+.+..++.+.++.+..+.||.+..+..+.+..|++++.|||||++++++++.+....+++|
T Consensus 94 r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkml 173 (400)
T KOG0328|consen 94 RETQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKML 173 (400)
T ss_pred ceeeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEE
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhccccccCCceeeeeeecccceE
Q 015712 295 VLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAGKVTAMLLEMDQAEV 374 (402)
Q Consensus 295 VlDEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~~~~~~~~~~~~~~v~q~~~ 374 (402)
|+||||.|++.||..++-.|++.++ ++.|++++|||+|.++.++...|+.+|..+.+.+-+-..-.+.|.++
T Consensus 174 VLDEaDemL~kgfk~Qiydiyr~lp--------~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v 245 (400)
T KOG0328|consen 174 VLDEADEMLNKGFKEQIYDIYRYLP--------PGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFV 245 (400)
T ss_pred EeccHHHHHHhhHHHHHHHHHHhCC--------CCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhhee
Confidence 9999999999999999999999998 68999999999999999999999999999988777766666777754
Q ss_pred EeecccHHHHHHHHHHHHhhccc
Q 015712 375 FDLTESQDALKKKVVEAMDSLHL 397 (402)
Q Consensus 375 ~~~~e~~~~~~~~l~~~l~~l~~ 397 (402)
..+..+++.+.|..+.+.|-+
T Consensus 246 --~ve~EewKfdtLcdLYd~LtI 266 (400)
T KOG0328|consen 246 --AVEKEEWKFDTLCDLYDTLTI 266 (400)
T ss_pred --eechhhhhHhHHHHHhhhheh
Confidence 344557888888888887744
No 10
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1.9e-40 Score=344.33 Aligned_cols=249 Identities=24% Similarity=0.383 Sum_probs=210.5
Q ss_pred CCCcccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCC
Q 015712 134 GSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMK 213 (402)
Q Consensus 134 ~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~ 213 (402)
...+.++.+|++++|++.++++|.++||..||++|.++||.+++|+|+|++||||||||++|++|++..+...... ..
T Consensus 123 ~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~--~~ 200 (545)
T PTZ00110 123 ENVPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLL--RY 200 (545)
T ss_pred CCCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccc--cC
Confidence 4456788999999999999999999999999999999999999999999999999999999999999988753211 12
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeE
Q 015712 214 PMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRY 293 (402)
Q Consensus 214 ~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~ 293 (402)
..++.+|||+|||+||.|++..+..++...++++.+++||.....+...+..+++|||+||++|++++..+...+.++++
T Consensus 201 ~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~ 280 (545)
T PTZ00110 201 GDGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTY 280 (545)
T ss_pred CCCcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcE
Confidence 35789999999999999999999999988899999999999998888889999999999999999999998889999999
Q ss_pred EEEcCCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhh-ccccccCCcee-eeeeeccc
Q 015712 294 VVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLME-CLERDNAGKVT-AMLLEMDQ 371 (402)
Q Consensus 294 lVlDEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~-~~~~~~~~~~~-~~~~~v~q 371 (402)
|||||||+|++++|..++..|+..++ +++|+++||||++..++.+++.++. ++..+.++.+. .....+.|
T Consensus 281 lViDEAd~mld~gf~~~i~~il~~~~--------~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q 352 (545)
T PTZ00110 281 LVLDEADRMLDMGFEPQIRKIVSQIR--------PDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQ 352 (545)
T ss_pred EEeehHHhhhhcchHHHHHHHHHhCC--------CCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeE
Confidence 99999999999999999999999875 4789999999999999999999886 46665555443 22233444
Q ss_pred ceEEeecccHHHHHHHHHHHHhhc
Q 015712 372 AEVFDLTESQDALKKKVVEAMDSL 395 (402)
Q Consensus 372 ~~~~~~~e~~~~~~~~l~~~l~~l 395 (402)
...+ ..+ .++...|.++|..+
T Consensus 353 ~~~~-~~~--~~k~~~L~~ll~~~ 373 (545)
T PTZ00110 353 EVFV-VEE--HEKRGKLKMLLQRI 373 (545)
T ss_pred EEEE-Eec--hhHHHHHHHHHHHh
Confidence 4332 222 34455565555543
No 11
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=3.3e-40 Score=341.16 Aligned_cols=250 Identities=23% Similarity=0.361 Sum_probs=213.7
Q ss_pred CCCcccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCC
Q 015712 134 GSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMK 213 (402)
Q Consensus 134 ~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~ 213 (402)
...+.++.+|++++|++.+++.|...||..|||+|.++||.++.|+|+|++||||||||++|++|++..+..........
T Consensus 114 ~~~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~ 193 (518)
T PLN00206 114 EAVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSE 193 (518)
T ss_pred CCCCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccc
Confidence 34567899999999999999999999999999999999999999999999999999999999999999886532211123
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeE
Q 015712 214 PMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRY 293 (402)
Q Consensus 214 ~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~ 293 (402)
..++++|||+|||+||.|++..++.+....++++.+++||.....+...+..+++|+|+||++|.+++.++.+.++++++
T Consensus 194 ~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~ 273 (518)
T PLN00206 194 QRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSV 273 (518)
T ss_pred cCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeE
Confidence 36789999999999999999999999888889999999999988888888889999999999999999988889999999
Q ss_pred EEEcCCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhccccccCCceeeeeeecccce
Q 015712 294 VVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAGKVTAMLLEMDQAE 373 (402)
Q Consensus 294 lVlDEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~~~~~~~~~~~~~~v~q~~ 373 (402)
|||||||+|+++||..++..|+..++ ++|+++||||+++.+..++..++.++..+.++........+.|..
T Consensus 274 lViDEad~ml~~gf~~~i~~i~~~l~---------~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~ 344 (518)
T PLN00206 274 LVLDEVDCMLERGFRDQVMQIFQALS---------QPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLA 344 (518)
T ss_pred EEeecHHHHhhcchHHHHHHHHHhCC---------CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEE
Confidence 99999999999999999999998875 679999999999999999999999988776655544444444544
Q ss_pred EEeecccHHHHHHHHHHHHhhc
Q 015712 374 VFDLTESQDALKKKVVEAMDSL 395 (402)
Q Consensus 374 ~~~~~e~~~~~~~~l~~~l~~l 395 (402)
.+.. ...+..+|.++|.+.
T Consensus 345 ~~~~---~~~k~~~l~~~l~~~ 363 (518)
T PLN00206 345 IWVE---TKQKKQKLFDILKSK 363 (518)
T ss_pred Eecc---chhHHHHHHHHHHhh
Confidence 3321 234556677777654
No 12
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.3e-39 Score=329.58 Aligned_cols=245 Identities=22% Similarity=0.318 Sum_probs=206.3
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeE
Q 015712 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRA 219 (402)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 219 (402)
..+|++++|++.++++|.++||..||++|.++||.++.|+|++++||||||||++|++|+++.+............++++
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~ 86 (423)
T PRK04837 7 EQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRA 86 (423)
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 46799999999999999999999999999999999999999999999999999999999999997654322222357899
Q ss_pred EEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCC
Q 015712 220 IVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 299 (402)
Q Consensus 220 Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEa 299 (402)
|||+||++||.|+++.+..+....++++..++||.+...+...+..+++||||||++|++++..+.+.+.++++||||||
T Consensus 87 lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEa 166 (423)
T PRK04837 87 LIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEA 166 (423)
T ss_pred EEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecH
Confidence 99999999999999999999999999999999999988888888889999999999999999988899999999999999
Q ss_pred CccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhccccccCCceeeeeeecccceEEeecc
Q 015712 300 DTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAGKVTAMLLEMDQAEVFDLTE 379 (402)
Q Consensus 300 d~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~~~~~~~~~~~~~~v~q~~~~~~~e 379 (402)
|+|++++|..++..++..++.. ...|+++||||++..+..++..++.+|..+.+.........+.+.+.+.
T Consensus 167 d~l~~~~f~~~i~~i~~~~~~~------~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~--- 237 (423)
T PRK04837 167 DRMFDLGFIKDIRWLFRRMPPA------NQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYP--- 237 (423)
T ss_pred HHHhhcccHHHHHHHHHhCCCc------cceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeC---
Confidence 9999999999999999988632 3578999999999999999999999987765544333333333333321
Q ss_pred cHHHHHHHHHHHHh
Q 015712 380 SQDALKKKVVEAMD 393 (402)
Q Consensus 380 ~~~~~~~~l~~~l~ 393 (402)
....+...|..++.
T Consensus 238 ~~~~k~~~l~~ll~ 251 (423)
T PRK04837 238 SNEEKMRLLQTLIE 251 (423)
T ss_pred CHHHHHHHHHHHHH
Confidence 22344444555443
No 13
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6e-40 Score=316.81 Aligned_cols=241 Identities=25% Similarity=0.349 Sum_probs=204.6
Q ss_pred cccccCCCC--HHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCe
Q 015712 141 SSFQELGLK--AEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPR 218 (402)
Q Consensus 141 ~~f~~l~l~--~~l~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 218 (402)
.+|++++.+ ++++.++..+||...||+|..+||.++.++||++.|+||||||+||++|+++.+.+.....+ +....
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~--~~~vg 81 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTP--PGQVG 81 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCC--cccee
Confidence 468887755 99999999999999999999999999999999999999999999999999999976543221 12357
Q ss_pred EEEEcCchHHHHHHHHHHHHhhcc-CCcceeeccCCCChHHHHHHh-cCCccEEEeCchhhHHHhhcC--CCCCCCeeEE
Q 015712 219 AIVLCTTEESADQGFHMAKFISHC-ARLDSSMENGGVSSKALEDVS-NAPIGMLIATPSEVLQHIEDR--NVSCDDIRYV 294 (402)
Q Consensus 219 ~Lvl~PtreLa~Qi~~~~~~l~~~-~~~~v~~~~gg~~~~~~~~~l-~~~~~IlV~TP~~l~~~l~~~--~~~l~~l~~l 294 (402)
+|||+||||||.||..++..+... .++++.+++||.+.......+ .++++|+|||||||.+++++. .+++.++.+|
T Consensus 82 alIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~L 161 (567)
T KOG0345|consen 82 ALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEIL 161 (567)
T ss_pred EEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceE
Confidence 999999999999999999887766 688999999999887776655 468999999999999999874 4567799999
Q ss_pred EEcCCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhccccccCCceee--eeeecccc
Q 015712 295 VLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAGKVTA--MLLEMDQA 372 (402)
Q Consensus 295 VlDEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~~~~~~~~~~--~~~~v~q~ 372 (402)
|+||||+++|+||...++.|++.||+ .+++=+||||.+.++.++.+..++||..+.+..... +...+.-.
T Consensus 162 VLDEADrLldmgFe~~~n~ILs~LPK--------QRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~ 233 (567)
T KOG0345|consen 162 VLDEADRLLDMGFEASVNTILSFLPK--------QRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALE 233 (567)
T ss_pred EecchHhHhcccHHHHHHHHHHhccc--------ccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcce
Confidence 99999999999999999999999995 679999999999999999999999999987765554 44444445
Q ss_pred eEEeecccHHHHHHHHHHHHhh
Q 015712 373 EVFDLTESQDALKKKVVEAMDS 394 (402)
Q Consensus 373 ~~~~~~e~~~~~~~~l~~~l~~ 394 (402)
|.++ ..+.+...|+..|..
T Consensus 234 Y~v~---~a~eK~~~lv~~L~~ 252 (567)
T KOG0345|consen 234 YLVC---EADEKLSQLVHLLNN 252 (567)
T ss_pred eeEe---cHHHHHHHHHHHHhc
Confidence 5543 446666677777665
No 14
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=2.6e-40 Score=321.14 Aligned_cols=235 Identities=27% Similarity=0.386 Sum_probs=210.2
Q ss_pred CCcccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCC
Q 015712 135 SNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKP 214 (402)
Q Consensus 135 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~ 214 (402)
++......|+++.|++.+++++.++||..+|++|+.+|+.++.|+|+++.|.||||||+||+||+++.+.+.... ..
T Consensus 76 ~s~~~~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~---~r 152 (543)
T KOG0342|consen 76 DSITTTFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFK---PR 152 (543)
T ss_pred cchhhhhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccC---CC
Confidence 334456679999999999999999999999999999999999999999999999999999999999999986543 23
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHHhhccC-CcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhc-CCCCCCCee
Q 015712 215 MHPRAIVLCTTEESADQGFHMAKFISHCA-RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIED-RNVSCDDIR 292 (402)
Q Consensus 215 ~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~-~~~~l~~l~ 292 (402)
.+..+||||||||||.|++.+++.+..+. ++.+.+++||.+.....+.+..+++|+|+|||||++|+++ ..+.+.+++
T Consensus 153 ~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k 232 (543)
T KOG0342|consen 153 NGTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLK 232 (543)
T ss_pred CCeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccc
Confidence 67799999999999999999999999988 8999999999999888888888999999999999999998 566778899
Q ss_pred EEEEcCCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhc-ccccc--CCceeeeeeec
Q 015712 293 YVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMEC-LERDN--AGKVTAMLLEM 369 (402)
Q Consensus 293 ~lVlDEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~-~~~~~--~~~~~~~~~~v 369 (402)
++|+||||+++|+||..++..|+..++. .+|+++||||.++.|+++++-.+.. +..+. -+....++-.+
T Consensus 233 ~lvlDEADrlLd~GF~~di~~Ii~~lpk--------~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l 304 (543)
T KOG0342|consen 233 CLVLDEADRLLDIGFEEDVEQIIKILPK--------QRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERL 304 (543)
T ss_pred eeEeecchhhhhcccHHHHHHHHHhccc--------cceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcc
Confidence 9999999999999999999999999984 7899999999999999999888877 54443 35666788888
Q ss_pred ccceEEeeccc
Q 015712 370 DQAEVFDLTES 380 (402)
Q Consensus 370 ~q~~~~~~~e~ 380 (402)
+|.++++..++
T Consensus 305 ~Qgyvv~~~~~ 315 (543)
T KOG0342|consen 305 EQGYVVAPSDS 315 (543)
T ss_pred cceEEeccccc
Confidence 99888776653
No 15
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-40 Score=328.39 Aligned_cols=254 Identities=25% Similarity=0.377 Sum_probs=227.6
Q ss_pred CCcccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCC-C
Q 015712 135 SNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPM-K 213 (402)
Q Consensus 135 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~-~ 213 (402)
+-+..+..|.+-.+.+.++..+...||..|||+|+.+||.+..|+|+++||+||||||.+|++|++..++.+...... .
T Consensus 68 ~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~ 147 (482)
T KOG0335|consen 68 DVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGES 147 (482)
T ss_pred ccCCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCccc
Confidence 345566789999999999999999999999999999999999999999999999999999999999999987553332 2
Q ss_pred C--CCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCe
Q 015712 214 P--MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDI 291 (402)
Q Consensus 214 ~--~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l 291 (402)
. ..|++|||+||||||.|++..++++.-..+++++.+|||.+...+.+.+..+|+|+|||||+|.+++..+.+.++++
T Consensus 148 ~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~ 227 (482)
T KOG0335|consen 148 GGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNC 227 (482)
T ss_pred CCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhC
Confidence 2 35999999999999999999999999889999999999999999999999999999999999999999999999999
Q ss_pred eEEEEcCCCcccc-CCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhc-cccccCCceeeeeeec
Q 015712 292 RYVVLDEADTLFD-RGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMEC-LERDNAGKVTAMLLEM 369 (402)
Q Consensus 292 ~~lVlDEad~~l~-~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~-~~~~~~~~~~~~~~~v 369 (402)
+||||||||+|+| ++|.++|+.|+..+... .....|+++||||+|.+++.++..|+.+ +...-++.+.....++
T Consensus 228 k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~----~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni 303 (482)
T KOG0335|consen 228 KFLVLDEADRMLDEMGFEPQIRKIVEQLGMP----PKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENI 303 (482)
T ss_pred cEEEecchHHhhhhccccccHHHHhcccCCC----CccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccc
Confidence 9999999999999 99999999999887532 1247899999999999999999999997 8888899999999999
Q ss_pred ccceEEeecccHHHHHHHHHHHHhhc
Q 015712 370 DQAEVFDLTESQDALKKKVVEAMDSL 395 (402)
Q Consensus 370 ~q~~~~~~~e~~~~~~~~l~~~l~~l 395 (402)
.|...|+ .+ .+++.+|+++|...
T Consensus 304 ~q~i~~V-~~--~~kr~~Lldll~~~ 326 (482)
T KOG0335|consen 304 TQKILFV-NE--MEKRSKLLDLLNKD 326 (482)
T ss_pred eeEeeee-cc--hhhHHHHHHHhhcc
Confidence 9998774 23 57778888887754
No 16
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.3e-40 Score=322.41 Aligned_cols=223 Identities=26% Similarity=0.434 Sum_probs=195.7
Q ss_pred CCcccccccccCCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCC
Q 015712 135 SNAEVVSSFQELGLKAEMIKAVEK-MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMK 213 (402)
Q Consensus 135 ~~~~~~~~f~~l~l~~~l~~~l~~-~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~ 213 (402)
+.+..-..|..+||++.++..|.. +++..||.+|.++||.++.|+|++|.|+||||||++|++|+++.|..-..... +
T Consensus 130 e~~fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~-R 208 (708)
T KOG0348|consen 130 EAPFTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQ-R 208 (708)
T ss_pred ccccccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCcccc-c
Confidence 334455689999999999999987 69999999999999999999999999999999999999999999987544333 5
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHHhhccC-CcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhc-CCCCCCCe
Q 015712 214 PMHPRAIVLCTTEESADQGFHMAKFISHCA-RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIED-RNVSCDDI 291 (402)
Q Consensus 214 ~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~-~~~~l~~l 291 (402)
..|+.||||+||||||.|+|+.++.+.+.. .+-.+.+.||.........+++|++|||||||||++||.+ ..+.+..+
T Consensus 209 s~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~L 288 (708)
T KOG0348|consen 209 SDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRL 288 (708)
T ss_pred cCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeee
Confidence 579999999999999999999999987654 4667889999998888899999999999999999999987 67889999
Q ss_pred eEEEEcCCCccccCCCHHHHHHHHHHhhh----hhcc-cCCCCceEEEEeeccCchhHHHHHHHhhcccccc
Q 015712 292 RYVVLDEADTLFDRGFGPEISKILNPLKD----SALK-SNGQGFQTILVTAAIAEMLGEQLSSLMECLERDN 358 (402)
Q Consensus 292 ~~lVlDEad~~l~~gf~~~i~~il~~l~~----~~~~-~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~~~~ 358 (402)
+||||||+|++++.||..+|..|+..+.. .+.+ ..+...|.+++||||++.|.+++..-+.+|..+.
T Consensus 289 RwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ 360 (708)
T KOG0348|consen 289 RWLVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYIS 360 (708)
T ss_pred eEEEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeee
Confidence 99999999999999999999999999843 1211 2233589999999999999999999999987664
No 17
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-39 Score=319.24 Aligned_cols=209 Identities=27% Similarity=0.423 Sum_probs=182.2
Q ss_pred cCCCcccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC-CcEEEEcCCCCChhhHhHHHHHHHHHhhcccCC
Q 015712 133 SGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNG-KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLP 211 (402)
Q Consensus 133 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g-~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~ 211 (402)
.++....+..|.+|+||..++++|..+||..||+||..+||++..| .|+++.|.||||||+||.||+++.+........
T Consensus 173 ~~~~~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~ 252 (731)
T KOG0347|consen 173 DDSSKVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQ 252 (731)
T ss_pred ccccccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHh
Confidence 3445566888999999999999999999999999999999999999 699999999999999999999996554221110
Q ss_pred ----CCCCCC--eEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCC
Q 015712 212 ----MKPMHP--RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRN 285 (402)
Q Consensus 212 ----~~~~~~--~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~ 285 (402)
....++ .+||++||||||.||.+++..++..+++++..++||.+...|.+.++..++|||+|||||+.++....
T Consensus 253 e~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n 332 (731)
T KOG0347|consen 253 ELSNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDN 332 (731)
T ss_pred hhhhHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhh
Confidence 122344 49999999999999999999999999999999999999999999999999999999999999998754
Q ss_pred C---CCCCeeEEEEcCCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhH
Q 015712 286 V---SCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLG 344 (402)
Q Consensus 286 ~---~l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~ 344 (402)
. ++.++++|||||+|+|++.|++.++..|+..|.. .+.....|+++||||++-..+
T Consensus 333 ~~l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e---~~~~~qrQTlVFSATlt~~~~ 391 (731)
T KOG0347|consen 333 THLGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNE---EQKNRQRQTLVFSATLTLVLQ 391 (731)
T ss_pred hhhhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhh---hhcccccceEEEEEEeehhhc
Confidence 3 5788999999999999999999999999999973 234567899999999986444
No 18
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.5e-40 Score=311.52 Aligned_cols=227 Identities=26% Similarity=0.338 Sum_probs=202.6
Q ss_pred ccccccccc-CCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCC
Q 015712 137 AEVVSSFQE-LGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPM 215 (402)
Q Consensus 137 ~~~~~~f~~-l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~ 215 (402)
|.+..+|++ |.-.+++++.+.+.||.+|||||.+|||.+++|.|++++|.||+|||++|++|-+..+........ ...
T Consensus 215 PnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~-qr~ 293 (629)
T KOG0336|consen 215 PNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRRE-QRN 293 (629)
T ss_pred CCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhh-ccC
Confidence 556778877 567799999999999999999999999999999999999999999999999999887765443322 446
Q ss_pred CCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEE
Q 015712 216 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 295 (402)
Q Consensus 216 ~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lV 295 (402)
++.+|+++|||+||.|+.-.+..+. +.+++.+|++||.+..++...++.+++|+++||++|.++...+.+++..+.|||
T Consensus 294 ~p~~lvl~ptreLalqie~e~~kys-yng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlV 372 (629)
T KOG0336|consen 294 GPGVLVLTPTRELALQIEGEVKKYS-YNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLV 372 (629)
T ss_pred CCceEEEeccHHHHHHHHhHHhHhh-hcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEE
Confidence 8999999999999999988877764 558999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhccccccCCceeeee-eecccce
Q 015712 296 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAGKVTAML-LEMDQAE 373 (402)
Q Consensus 296 lDEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~~~~~~~~~~~~-~~v~q~~ 373 (402)
|||||+|+|+||.++|..|+-.+. +++|+++.|||||+.|..++..|+++|..+++++..-.. -.|.|..
T Consensus 373 lDEADrMLDMgFEpqIrkilldiR--------PDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i 443 (629)
T KOG0336|consen 373 LDEADRMLDMGFEPQIRKILLDIR--------PDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNI 443 (629)
T ss_pred ecchhhhhcccccHHHHHHhhhcC--------CcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeE
Confidence 999999999999999999988775 699999999999999999999999999999888776543 4556654
No 19
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-39 Score=311.09 Aligned_cols=210 Identities=27% Similarity=0.407 Sum_probs=190.6
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEE
Q 015712 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAI 220 (402)
Q Consensus 141 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~L 220 (402)
.+|++|||++.+++++.++||.+||-||..+||.++.|+|+++.|.||||||++|+||+++.++...... ....++.++
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~-~~e~~~sa~ 97 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTN-DGEQGPSAV 97 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcc-cccccceeE
Confidence 6899999999999999999999999999999999999999999999999999999999999998765433 355799999
Q ss_pred EEcCchHHHHHHHHHHHHhhccCC--cceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCC-CCCCCeeEEEEc
Q 015712 221 VLCTTEESADQGFHMAKFISHCAR--LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRN-VSCDDIRYVVLD 297 (402)
Q Consensus 221 vl~PtreLa~Qi~~~~~~l~~~~~--~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~-~~l~~l~~lVlD 297 (402)
||+||+|||+|++.++..+..+++ +++.-+....+.......+...++|||+||++++.++..+. ..+..+.++|+|
T Consensus 98 iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvD 177 (569)
T KOG0346|consen 98 ILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVD 177 (569)
T ss_pred EEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEec
Confidence 999999999999999999877764 56666666667666667888889999999999999999876 678999999999
Q ss_pred CCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhccccccC
Q 015712 298 EADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNA 359 (402)
Q Consensus 298 Ead~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~~~~~ 359 (402)
|||.++..||.+++..|.+.||. ..|.++||||+++++..+-+.+|++|.+...
T Consensus 178 EADLllsfGYeedlk~l~~~LPr--------~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl 231 (569)
T KOG0346|consen 178 EADLLLSFGYEEDLKKLRSHLPR--------IYQCFLMSATLSDDVQALKKLFLHNPVILKL 231 (569)
T ss_pred hhhhhhhcccHHHHHHHHHhCCc--------hhhheeehhhhhhHHHHHHHHhccCCeEEEe
Confidence 99999999999999999999995 6799999999999999999999999988633
No 20
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1.8e-38 Score=333.09 Aligned_cols=220 Identities=26% Similarity=0.385 Sum_probs=197.4
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeE
Q 015712 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRA 219 (402)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 219 (402)
..+|.+|+|++.++++|.++||..|||+|.++||.++.|+|+|++||||||||++|++|+++.+... ..++++
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~-------~~~~~~ 77 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE-------LKAPQI 77 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc-------cCCCeE
Confidence 4579999999999999999999999999999999999999999999999999999999999988642 246899
Q ss_pred EEEcCchHHHHHHHHHHHHhhccC-CcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcC
Q 015712 220 IVLCTTEESADQGFHMAKFISHCA-RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 298 (402)
Q Consensus 220 Lvl~PtreLa~Qi~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDE 298 (402)
|||+||++||.|++..+..+.... ++.++.++||.+...+...+..+++||||||++|++++.++.+.++++++|||||
T Consensus 78 LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDE 157 (629)
T PRK11634 78 LVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDE 157 (629)
T ss_pred EEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEecc
Confidence 999999999999999999887665 7899999999999999888999999999999999999999889999999999999
Q ss_pred CCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhccccccCCceeeeeeecccceE
Q 015712 299 ADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAGKVTAMLLEMDQAEV 374 (402)
Q Consensus 299 ad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~~~~~~~~~~~~~~v~q~~~ 374 (402)
||.|++++|...+..|+..++ ...|+++||||+|..+..++..|+.+|..+.+.........+.|.++
T Consensus 158 Ad~ml~~gf~~di~~Il~~lp--------~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~ 225 (629)
T PRK11634 158 ADEMLRMGFIEDVETIMAQIP--------EGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYW 225 (629)
T ss_pred HHHHhhcccHHHHHHHHHhCC--------CCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEE
Confidence 999999999999999999987 47899999999999999999999999887755444444444555443
No 21
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.1e-38 Score=330.36 Aligned_cols=214 Identities=28% Similarity=0.377 Sum_probs=191.8
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEE
Q 015712 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAI 220 (402)
Q Consensus 141 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~L 220 (402)
.+|++|+|++.++++|.++||..||++|.++||.++.|+|+|++||||||||++|++|+++.+.............+++|
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raL 88 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRAL 88 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 46999999999999999999999999999999999999999999999999999999999999876432211122368999
Q ss_pred EEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcC-CCCCCCeeEEEEcCC
Q 015712 221 VLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR-NVSCDDIRYVVLDEA 299 (402)
Q Consensus 221 vl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~-~~~l~~l~~lVlDEa 299 (402)
||+||++||.|++..+..+....++++..++|+.....+...+..+++|||+||++|++++.++ .+.+..+++||||||
T Consensus 89 Il~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEA 168 (572)
T PRK04537 89 ILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEA 168 (572)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCH
Confidence 9999999999999999999998999999999999999888888888999999999999999875 577899999999999
Q ss_pred CccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhccccccCC
Q 015712 300 DTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAG 360 (402)
Q Consensus 300 d~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~~~~~~ 360 (402)
|+|++++|...+..|+..++.. ...|+++||||++..+..++..++.+|..+.+.
T Consensus 169 h~lld~gf~~~i~~il~~lp~~------~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~ 223 (572)
T PRK04537 169 DRMFDLGFIKDIRFLLRRMPER------GTRQTLLFSATLSHRVLELAYEHMNEPEKLVVE 223 (572)
T ss_pred HHHhhcchHHHHHHHHHhcccc------cCceEEEEeCCccHHHHHHHHHHhcCCcEEEec
Confidence 9999999999999999988742 267999999999999999999999988665443
No 22
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=3.1e-38 Score=322.22 Aligned_cols=210 Identities=30% Similarity=0.407 Sum_probs=190.8
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEE
Q 015712 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIV 221 (402)
Q Consensus 142 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lv 221 (402)
+|++|+|+++++++|.++||..||++|.++||.++.|+|+|++||||||||++|++|+++.+...... ......+++||
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~-~~~~~~~~aLi 80 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPH-AKGRRPVRALI 80 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccc-cccCCCceEEE
Confidence 69999999999999999999999999999999999999999999999999999999999998754321 01123568999
Q ss_pred EcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCc
Q 015712 222 LCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 301 (402)
Q Consensus 222 l~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~ 301 (402)
|+||++||.|++..+..+..+.++++..++|+.+...+...+..+++|+|+||++|++++....+.++++++|||||||+
T Consensus 81 l~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ 160 (456)
T PRK10590 81 LTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADR 160 (456)
T ss_pred EeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHH
Confidence 99999999999999999999889999999999999888888888999999999999999988888999999999999999
Q ss_pred cccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhccccccCC
Q 015712 302 LFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAG 360 (402)
Q Consensus 302 ~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~~~~~~ 360 (402)
|++++|...+..++..++ ...|+++||||++..+..++..++.+|..+.+.
T Consensus 161 ll~~~~~~~i~~il~~l~--------~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~ 211 (456)
T PRK10590 161 MLDMGFIHDIRRVLAKLP--------AKRQNLLFSATFSDDIKALAEKLLHNPLEIEVA 211 (456)
T ss_pred HhccccHHHHHHHHHhCC--------ccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEe
Confidence 999999999999998886 367999999999999999999999998766443
No 23
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=3.6e-38 Score=322.33 Aligned_cols=206 Identities=27% Similarity=0.397 Sum_probs=190.5
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeE
Q 015712 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRA 219 (402)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 219 (402)
+.+|++|+|++.++++|.++||..|||+|.++||.++.|+|++++||||||||++|++|+++.+... ...+++
T Consensus 3 ~~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~-------~~~~~~ 75 (460)
T PRK11776 3 MTAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVK-------RFRVQA 75 (460)
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhc-------cCCceE
Confidence 4679999999999999999999999999999999999999999999999999999999999988642 246789
Q ss_pred EEEcCchHHHHHHHHHHHHhhccC-CcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcC
Q 015712 220 IVLCTTEESADQGFHMAKFISHCA-RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 298 (402)
Q Consensus 220 Lvl~PtreLa~Qi~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDE 298 (402)
|||+||++||.|+.+.++.+.... ++++..++||.+...+...+..+++|+||||++|.+++.++.+.+.++++|||||
T Consensus 76 lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDE 155 (460)
T PRK11776 76 LVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDE 155 (460)
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEEC
Confidence 999999999999999999887654 7899999999999999888999999999999999999999888999999999999
Q ss_pred CCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhccccccCC
Q 015712 299 ADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAG 360 (402)
Q Consensus 299 ad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~~~~~~ 360 (402)
||+|++++|...+..++..++ ...|+++||||+++.+..++..++++|..+.+.
T Consensus 156 ad~~l~~g~~~~l~~i~~~~~--------~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~ 209 (460)
T PRK11776 156 ADRMLDMGFQDAIDAIIRQAP--------ARRQTLLFSATYPEGIAAISQRFQRDPVEVKVE 209 (460)
T ss_pred HHHHhCcCcHHHHHHHHHhCC--------cccEEEEEEecCcHHHHHHHHHhcCCCEEEEEC
Confidence 999999999999999999887 478999999999999999999999998876543
No 24
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.5e-39 Score=300.33 Aligned_cols=239 Identities=22% Similarity=0.295 Sum_probs=204.8
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCe
Q 015712 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPR 218 (402)
Q Consensus 139 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 218 (402)
....|+.|||++|+.+-|+.+|+..|||+|..|||.++.|+|+|.+|.||||||++|.+|+++.+..++ .|..
T Consensus 5 t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP-------~giF 77 (442)
T KOG0340|consen 5 TAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDP-------YGIF 77 (442)
T ss_pred ccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCC-------Ccce
Confidence 356799999999999999999999999999999999999999999999999999999999999998854 7999
Q ss_pred EEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcC----CCCCCCeeEE
Q 015712 219 AIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR----NVSCDDIRYV 294 (402)
Q Consensus 219 ~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~----~~~l~~l~~l 294 (402)
++|++||||||.|+.+.+..+++..++++++++||.+.-.+...+..++||||+||||+.+++..+ ...+++++|+
T Consensus 78 alvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkfl 157 (442)
T KOG0340|consen 78 ALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFL 157 (442)
T ss_pred EEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeE
Confidence 999999999999999999999999999999999999999999999999999999999999999875 2357899999
Q ss_pred EEcCCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhc--cccccCCceeeeeeecccc
Q 015712 295 VLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMEC--LERDNAGKVTAMLLEMDQA 372 (402)
Q Consensus 295 VlDEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~--~~~~~~~~~~~~~~~v~q~ 372 (402)
|+||||+|++.+|.+.++.+++.++. .+|+++||||+++.+..+...-.+. ...+.+..-.+++....|.
T Consensus 158 VlDEADrvL~~~f~d~L~~i~e~lP~--------~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~ 229 (442)
T KOG0340|consen 158 VLDEADRVLAGCFPDILEGIEECLPK--------PRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQG 229 (442)
T ss_pred EecchhhhhccchhhHHhhhhccCCC--------ccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhh
Confidence 99999999999999999999999983 6799999999999877774443333 2222333445566677788
Q ss_pred eEEeecccHHHHHHHHHHHHhhc
Q 015712 373 EVFDLTESQDALKKKVVEAMDSL 395 (402)
Q Consensus 373 ~~~~~~e~~~~~~~~l~~~l~~l 395 (402)
|+++.. +.+.-.|+.+|..+
T Consensus 230 yI~~~~---~vkdaYLv~~Lr~~ 249 (442)
T KOG0340|consen 230 YILVSI---DVKDAYLVHLLRDF 249 (442)
T ss_pred eeecch---hhhHHHHHHHHhhh
Confidence 877533 44444555555443
No 25
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.9e-39 Score=335.69 Aligned_cols=252 Identities=24% Similarity=0.369 Sum_probs=227.4
Q ss_pred CCCcccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCC
Q 015712 134 GSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMK 213 (402)
Q Consensus 134 ~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~ 213 (402)
...+.++++|...|++..++..++++||..|++||.+|||+|++|+|||++|.||||||++|++|++.++...+... .
T Consensus 358 ~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~--~ 435 (997)
T KOG0334|consen 358 KECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLE--E 435 (997)
T ss_pred CCCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChh--h
Confidence 35577899999999999999999999999999999999999999999999999999999999999997666543322 4
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCC---CCCCC
Q 015712 214 PMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRN---VSCDD 290 (402)
Q Consensus 214 ~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~---~~l~~ 290 (402)
+.||.+||++|||+||.||++.++.|...++++++++|||.....+...+++++.|+|||||++++++-.+. .++.+
T Consensus 436 gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR 515 (997)
T KOG0334|consen 436 GDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRR 515 (997)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccc
Confidence 569999999999999999999999999999999999999999999999999999999999999999986533 45677
Q ss_pred eeEEEEcCCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhccccccCCceeeeeeecc
Q 015712 291 IRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAGKVTAMLLEMD 370 (402)
Q Consensus 291 l~~lVlDEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~~~~~~~~~~~~~~v~ 370 (402)
+.|+|+||||+|+|+||.+++..|+..++ +..|+++||||+|..+..++...+.-|..+.++.-....-.|.
T Consensus 516 ~t~lv~deaDrmfdmgfePq~~~Ii~nlr--------pdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~ 587 (997)
T KOG0334|consen 516 VTYLVLDEADRMFDMGFEPQITRILQNLR--------PDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVT 587 (997)
T ss_pred cceeeechhhhhheeccCcccchHHhhcc--------hhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccce
Confidence 77999999999999999999999999986 6899999999999999999999999999988887777888888
Q ss_pred cceEEeecccHHHHHHHHHHHHhhccc
Q 015712 371 QAEVFDLTESQDALKKKVVEAMDSLHL 397 (402)
Q Consensus 371 q~~~~~~~e~~~~~~~~l~~~l~~l~~ 397 (402)
|...++..+ +++..+|+++|.....
T Consensus 588 q~v~V~~~e--~eKf~kL~eLl~e~~e 612 (997)
T KOG0334|consen 588 QVVRVCAIE--NEKFLKLLELLGERYE 612 (997)
T ss_pred EEEEEecCc--hHHHHHHHHHHHHHhh
Confidence 888887767 7888888888876544
No 26
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=4.2e-37 Score=312.35 Aligned_cols=239 Identities=27% Similarity=0.384 Sum_probs=200.6
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEE
Q 015712 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIV 221 (402)
Q Consensus 142 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lv 221 (402)
+|++|+|++.++++|.++||..||++|.++|++++.|+|++++||||+|||++|++|+++.+...... ...++++||
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~---~~~~~~~li 78 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRR---KSGPPRILI 78 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhcccc---CCCCceEEE
Confidence 69999999999999999999999999999999999999999999999999999999999998753211 224579999
Q ss_pred EcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCc
Q 015712 222 LCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 301 (402)
Q Consensus 222 l~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~ 301 (402)
|+||++||.|+++.+..+....++++..++||.....+...+..+++||||||++|++++..+.+.+.++++|||||||+
T Consensus 79 l~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~ 158 (434)
T PRK11192 79 LTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADR 158 (434)
T ss_pred ECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHH
Confidence 99999999999999999999999999999999999988888888999999999999999999889999999999999999
Q ss_pred cccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCc-hhHHHHHHHhhccccccCCceeeeeeecccceEEeeccc
Q 015712 302 LFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE-MLGEQLSSLMECLERDNAGKVTAMLLEMDQAEVFDLTES 380 (402)
Q Consensus 302 ~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~-~v~~~~~~~l~~~~~~~~~~~~~~~~~v~q~~~~~~~e~ 380 (402)
|++++|...+..|...++ ...|+++||||++. .+..+...++.+|..+.+.........+.|.+.. ...
T Consensus 159 ~l~~~~~~~~~~i~~~~~--------~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~--~~~ 228 (434)
T PRK11192 159 MLDMGFAQDIETIAAETR--------WRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYR--ADD 228 (434)
T ss_pred HhCCCcHHHHHHHHHhCc--------cccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEE--eCC
Confidence 999999999999988776 36799999999985 5888888888888766554433333333333222 222
Q ss_pred HHHHHHHHHHHHh
Q 015712 381 QDALKKKVVEAMD 393 (402)
Q Consensus 381 ~~~~~~~l~~~l~ 393 (402)
.+.+.+-|..++.
T Consensus 229 ~~~k~~~l~~l~~ 241 (434)
T PRK11192 229 LEHKTALLCHLLK 241 (434)
T ss_pred HHHHHHHHHHHHh
Confidence 3344444444443
No 27
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3e-38 Score=292.11 Aligned_cols=219 Identities=24% Similarity=0.331 Sum_probs=200.7
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEE
Q 015712 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAI 220 (402)
Q Consensus 141 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~L 220 (402)
..|++++|..+++..+.+.||.+|+|+|.++||.++.|+|+++.|..|+|||.+|++|+++.+.... ...+++
T Consensus 85 ~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~-------~~IQ~~ 157 (459)
T KOG0326|consen 85 NEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKK-------NVIQAI 157 (459)
T ss_pred ccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCccc-------cceeEE
Confidence 4599999999999999999999999999999999999999999999999999999999999887633 578999
Q ss_pred EEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCC
Q 015712 221 VLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 300 (402)
Q Consensus 221 vl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad 300 (402)
|++||||||.|+.+.+..+++..++.+...+||.+.....-.+...++++||||||++++...+.-.++++.++|+||||
T Consensus 158 ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEAD 237 (459)
T KOG0326|consen 158 ILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEAD 237 (459)
T ss_pred EEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhh
Confidence 99999999999999999999999999999999999999888899999999999999999999988899999999999999
Q ss_pred ccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhccccccCCceeeeeeecccceEE
Q 015712 301 TLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAGKVTAMLLEMDQAEVF 375 (402)
Q Consensus 301 ~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~~~~~~~~~~~~~~v~q~~~~ 375 (402)
.+++..|.+.++.++..|+. .+|++++|||+|-.|..+..++|++|..++. ..+-+...+.|.|-|
T Consensus 238 KlLs~~F~~~~e~li~~lP~--------~rQillySATFP~tVk~Fm~~~l~kPy~INL-M~eLtl~GvtQyYaf 303 (459)
T KOG0326|consen 238 KLLSVDFQPIVEKLISFLPK--------ERQILLYSATFPLTVKGFMDRHLKKPYEINL-MEELTLKGVTQYYAF 303 (459)
T ss_pred hhhchhhhhHHHHHHHhCCc--------cceeeEEecccchhHHHHHHHhccCcceeeh-hhhhhhcchhhheee
Confidence 99999999999999999984 7899999999999999999999999987743 233344445555444
No 28
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.4e-36 Score=309.94 Aligned_cols=216 Identities=22% Similarity=0.298 Sum_probs=190.6
Q ss_pred ccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCC
Q 015712 138 EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHP 217 (402)
Q Consensus 138 ~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~ 217 (402)
+....|.+++|++.++++|.++||..||++|.++|++++.|+|+|++||||||||++|++|+++.+.............+
T Consensus 84 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~ 163 (475)
T PRK01297 84 EGKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEP 163 (475)
T ss_pred cCCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCc
Confidence 44568999999999999999999999999999999999999999999999999999999999999886532211112367
Q ss_pred eEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhc-CCccEEEeCchhhHHHhhcCCCCCCCeeEEEE
Q 015712 218 RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSN-APIGMLIATPSEVLQHIEDRNVSCDDIRYVVL 296 (402)
Q Consensus 218 ~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~-~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVl 296 (402)
++|||+||++||.|+++.++.+....++++..++||.+...+...+. ..++|||+||++|++++..+...++++++|||
T Consensus 164 ~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lVi 243 (475)
T PRK01297 164 RALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVL 243 (475)
T ss_pred eEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEe
Confidence 99999999999999999999999888999999999988777666654 56899999999999999988889999999999
Q ss_pred cCCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhccccccC
Q 015712 297 DEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNA 359 (402)
Q Consensus 297 DEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~~~~~ 359 (402)
||||++++++|...+..|++.++.. ...|+++||||++.++..++..|+.++..+.+
T Consensus 244 DEah~l~~~~~~~~l~~i~~~~~~~------~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~ 300 (475)
T PRK01297 244 DEADRMLDMGFIPQVRQIIRQTPRK------EERQTLLFSATFTDDVMNLAKQWTTDPAIVEI 300 (475)
T ss_pred chHHHHHhcccHHHHHHHHHhCCCC------CCceEEEEEeecCHHHHHHHHHhccCCEEEEe
Confidence 9999999999999999999887532 35799999999999999999999998876543
No 29
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.8e-37 Score=275.56 Aligned_cols=240 Identities=22% Similarity=0.322 Sum_probs=222.1
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEE
Q 015712 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAI 220 (402)
Q Consensus 141 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~L 220 (402)
+.|.+|-|.+++++++-++||..|+.+|..+||...-|.|++.+|.+|.|||..|.+..++++... .....+|
T Consensus 42 sgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv-------~g~vsvl 114 (387)
T KOG0329|consen 42 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPV-------DGQVSVL 114 (387)
T ss_pred cchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCC-------CCeEEEE
Confidence 459999999999999999999999999999999999999999999999999999999999987652 2467899
Q ss_pred EEcCchHHHHHHHHHHHHhhccC-CcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCC
Q 015712 221 VLCTTEESADQGFHMAKFISHCA-RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 299 (402)
Q Consensus 221 vl~PtreLa~Qi~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEa 299 (402)
++|.|||||.||......++++. ++++.+++||.+.......+.+.++|+||||||++.+.+++.+++.+++++|+|||
T Consensus 115 vmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEc 194 (387)
T KOG0329|consen 115 VMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDEC 194 (387)
T ss_pred EEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhH
Confidence 99999999999999999998887 58999999999999999999999999999999999999999999999999999999
Q ss_pred CccccC-CCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhccccccCCceeeeeeecccceEEeec
Q 015712 300 DTLFDR-GFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAGKVTAMLLEMDQAEVFDLT 378 (402)
Q Consensus 300 d~~l~~-gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~~~~~~~~~~~~~~v~q~~~~~~~ 378 (402)
|.|+++ ..+.+++.|++..+ ..-|+++||||+++++...+++||.+|..++++......+...|++.+.+.
T Consensus 195 dkmle~lDMrRDvQEifr~tp--------~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLk 266 (387)
T KOG0329|consen 195 DKMLEQLDMRRDVQEIFRMTP--------HEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLK 266 (387)
T ss_pred HHHHHHHHHHHHHHHHhhcCc--------ccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhh
Confidence 999886 48889999999887 477999999999999999999999999999999999999999998887777
Q ss_pred ccHHHHHHHHHHHHhhccc
Q 015712 379 ESQDALKKKVVEAMDSLHL 397 (402)
Q Consensus 379 e~~~~~~~~l~~~l~~l~~ 397 (402)
+ .++..++.++|+.|.+
T Consensus 267 e--~eKNrkl~dLLd~LeF 283 (387)
T KOG0329|consen 267 E--NEKNRKLNDLLDVLEF 283 (387)
T ss_pred h--hhhhhhhhhhhhhhhh
Confidence 7 8889999999998865
No 30
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.2e-36 Score=286.73 Aligned_cols=240 Identities=27% Similarity=0.400 Sum_probs=210.4
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeE
Q 015712 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRA 219 (402)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 219 (402)
...|..+||+..+.+++++.||..|||||+..||.++.|+|++..|.||||||.||+||+++.+.... ..|.++
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s------~~g~Ra 93 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS------QTGLRA 93 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc------ccccce
Confidence 45699999999999999999999999999999999999999999999999999999999999998743 268899
Q ss_pred EEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCC
Q 015712 220 IVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 299 (402)
Q Consensus 220 Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEa 299 (402)
+++.|||+||.|..++.+.+++.+++++.+++||.+..++...+..++|||++|||+++++.-.-.+.|+.+.|+|+|||
T Consensus 94 lilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEa 173 (529)
T KOG0337|consen 94 LILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEA 173 (529)
T ss_pred eeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhh
Confidence 99999999999999999999999999999999999999999999999999999999999988776788999999999999
Q ss_pred CccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhccccccCCceeeeeeecccceEEeecc
Q 015712 300 DTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAGKVTAMLLEMDQAEVFDLTE 379 (402)
Q Consensus 300 d~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~~~~~~~~~~~~~~v~q~~~~~~~e 379 (402)
|+++++||.+++..++..++. +.|+++||||+|..+..+++.=+.+|..+-.+ ++.-+.+..+...+ ..
T Consensus 174 drlfemgfqeql~e~l~rl~~--------~~QTllfSatlp~~lv~fakaGl~~p~lVRld-vetkise~lk~~f~--~~ 242 (529)
T KOG0337|consen 174 DRLFEMGFQEQLHEILSRLPE--------SRQTLLFSATLPRDLVDFAKAGLVPPVLVRLD-VETKISELLKVRFF--RV 242 (529)
T ss_pred hHHHhhhhHHHHHHHHHhCCC--------cceEEEEeccCchhhHHHHHccCCCCceEEee-hhhhcchhhhhhee--ee
Confidence 999999999999999999984 67999999999999999999999999877533 22223333333232 23
Q ss_pred cHHHHHHHHHHHHhhcc
Q 015712 380 SQDALKKKVVEAMDSLH 396 (402)
Q Consensus 380 ~~~~~~~~l~~~l~~l~ 396 (402)
..+++.-.|+.+|+...
T Consensus 243 ~~a~K~aaLl~il~~~~ 259 (529)
T KOG0337|consen 243 RKAEKEAALLSILGGRI 259 (529)
T ss_pred ccHHHHHHHHHHHhccc
Confidence 34666667777776543
No 31
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=1.8e-34 Score=289.98 Aligned_cols=206 Identities=26% Similarity=0.417 Sum_probs=187.1
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCe
Q 015712 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPR 218 (402)
Q Consensus 139 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 218 (402)
...+|+++++++.+.++|..+||..|+++|..+|+.++.|+|++++||||||||++|++|++..+... ..+++
T Consensus 26 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~-------~~~~~ 98 (401)
T PTZ00424 26 IVDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD-------LNACQ 98 (401)
T ss_pred ccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC-------CCCce
Confidence 46889999999999999999999999999999999999999999999999999999999999887532 24678
Q ss_pred EEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcC
Q 015712 219 AIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 298 (402)
Q Consensus 219 ~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDE 298 (402)
+|||+||++|+.|+.+.+..++...++.+..++|+.....+...+..+++|+|+||++|.+++..+.+.++++++|||||
T Consensus 99 ~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDE 178 (401)
T PTZ00424 99 ALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDE 178 (401)
T ss_pred EEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEec
Confidence 99999999999999999999988888888888999888877778888899999999999999988888899999999999
Q ss_pred CCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhccccccC
Q 015712 299 ADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNA 359 (402)
Q Consensus 299 ad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~~~~~ 359 (402)
||++++++|...+..++..++ .+.|++++|||+++.+..+...++.++..+.+
T Consensus 179 ah~~~~~~~~~~~~~i~~~~~--------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 231 (401)
T PTZ00424 179 ADEMLSRGFKGQIYDVFKKLP--------PDVQVALFSATMPNEILELTTKFMRDPKRILV 231 (401)
T ss_pred HHHHHhcchHHHHHHHHhhCC--------CCcEEEEEEecCCHHHHHHHHHHcCCCEEEEe
Confidence 999999999999988888775 47899999999999999999999988866543
No 32
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6e-36 Score=283.85 Aligned_cols=227 Identities=25% Similarity=0.377 Sum_probs=202.2
Q ss_pred cCCCcccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCC
Q 015712 133 SGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPM 212 (402)
Q Consensus 133 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~ 212 (402)
++++.+...+|++++|++.|++++...||.+|+.||++||.++..|.|+++++++|+|||.+|.+++++.+..
T Consensus 18 esn~~evvdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~------- 90 (397)
T KOG0327|consen 18 ESNWNEVVDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDM------- 90 (397)
T ss_pred cccHHHHhhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCc-------
Confidence 3455567789999999999999999999999999999999999999999999999999999999999998854
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHh-cCCccEEEeCchhhHHHhhcCCCCCCCe
Q 015712 213 KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS-NAPIGMLIATPSEVLQHIEDRNVSCDDI 291 (402)
Q Consensus 213 ~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l-~~~~~IlV~TP~~l~~~l~~~~~~l~~l 291 (402)
.....+||+++|||+||.|+..+...++...++++..+.||.+...+...+ ..+++|+|||||++.+++..+.+..+.+
T Consensus 91 ~~ke~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~i 170 (397)
T KOG0327|consen 91 SVKETQALILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGI 170 (397)
T ss_pred chHHHHHHHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccce
Confidence 235779999999999999999999999999999999999999887555444 4568999999999999999988888999
Q ss_pred eEEEEcCCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhccccccCCceeeeeeeccc
Q 015712 292 RYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAGKVTAMLLEMDQ 371 (402)
Q Consensus 292 ~~lVlDEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~~~~~~~~~~~~~~v~q 371 (402)
+++|+||||.|+..||.++|..|++.++ .+.|++++|||+|.++....+.|+++|..+.+...+.+.--+.|
T Consensus 171 KmfvlDEaDEmLs~gfkdqI~~if~~lp--------~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq 242 (397)
T KOG0327|consen 171 KMFVLDEADEMLSRGFKDQIYDIFQELP--------SDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQ 242 (397)
T ss_pred eEEeecchHhhhccchHHHHHHHHHHcC--------cchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheee
Confidence 9999999999999999999999999998 47899999999999999999999999999877665544444444
Q ss_pred ceE
Q 015712 372 AEV 374 (402)
Q Consensus 372 ~~~ 374 (402)
.++
T Consensus 243 ~~i 245 (397)
T KOG0327|consen 243 FYI 245 (397)
T ss_pred eee
Confidence 433
No 33
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=100.00 E-value=1.3e-33 Score=257.52 Aligned_cols=202 Identities=30% Similarity=0.484 Sum_probs=184.6
Q ss_pred cccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEE
Q 015712 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVL 222 (402)
Q Consensus 143 f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl 222 (402)
|+++++++.+.+.|.+.||..|+++|.++++.+.+|+|+++++|||+|||++|++|+++.+.... ...++++||+
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~-----~~~~~~viii 75 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP-----KKDGPQALIL 75 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc-----ccCCceEEEE
Confidence 78999999999999999999999999999999999999999999999999999999999988742 1257899999
Q ss_pred cCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCcc
Q 015712 223 CTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 302 (402)
Q Consensus 223 ~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~ 302 (402)
+||++|+.|+...++.+....++.+..++|+.........+..+++|+|+||+++.+++.++...+.+++++|+||+|.+
T Consensus 76 ~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~ 155 (203)
T cd00268 76 APTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRM 155 (203)
T ss_pred cCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHh
Confidence 99999999999999999887889999999999887777777778999999999999999888888899999999999999
Q ss_pred ccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhccccc
Q 015712 303 FDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERD 357 (402)
Q Consensus 303 l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~~~ 357 (402)
.+.++...+..++..++ .++|++++|||+++.+..++..++++|..+
T Consensus 156 ~~~~~~~~~~~~~~~l~--------~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 156 LDMGFEDQIREILKLLP--------KDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred hccChHHHHHHHHHhCC--------cccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 98889999999998876 378999999999999999999999887654
No 34
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=4e-34 Score=284.61 Aligned_cols=227 Identities=24% Similarity=0.311 Sum_probs=202.2
Q ss_pred CcccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCC
Q 015712 136 NAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPM 215 (402)
Q Consensus 136 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~ 215 (402)
.+.....|+++-|...++.+|++.||..||+||..|||+++.+.|+||+|..|+|||++|.+.+++.+..+ ..
T Consensus 20 ~~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~-------~~ 92 (980)
T KOG4284|consen 20 QSNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSR-------SS 92 (980)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcc-------cC
Confidence 34456789999999999999999999999999999999999999999999999999999999999887653 36
Q ss_pred CCeEEEEcCchHHHHHHHHHHHHhhc-cCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEE
Q 015712 216 HPRAIVLCTTEESADQGFHMAKFISH-CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYV 294 (402)
Q Consensus 216 ~~~~Lvl~PtreLa~Qi~~~~~~l~~-~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~l 294 (402)
.++++||+||||+|.||...+..++. +.|++|.+++||+........++. ++|+||||||+.+++..+.++.++++++
T Consensus 93 ~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~-~rIvIGtPGRi~qL~el~~~n~s~vrlf 171 (980)
T KOG4284|consen 93 HIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQ-TRIVIGTPGRIAQLVELGAMNMSHVRLF 171 (980)
T ss_pred cceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhh-ceEEecCchHHHHHHHhcCCCccceeEE
Confidence 88999999999999999999999876 458999999999998776666654 7899999999999999999999999999
Q ss_pred EEcCCCccccCC-CHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhccccccCCceeeeeeecccce
Q 015712 295 VLDEADTLFDRG-FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAGKVTAMLLEMDQAE 373 (402)
Q Consensus 295 VlDEad~~l~~g-f~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~~~~~~~~~~~~~~v~q~~ 373 (402)
||||||.+++.+ |.++|..|+..|+. ..|+++||||.|..+.+.+..||++|..+....-....+.+.|.+
T Consensus 172 VLDEADkL~~t~sfq~~In~ii~slP~--------~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv 243 (980)
T KOG4284|consen 172 VLDEADKLMDTESFQDDINIIINSLPQ--------IRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYV 243 (980)
T ss_pred EeccHHhhhchhhHHHHHHHHHHhcch--------hheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhhee
Confidence 999999999955 99999999999995 679999999999999999999999998876655556667777776
Q ss_pred EEeec
Q 015712 374 VFDLT 378 (402)
Q Consensus 374 ~~~~~ 378 (402)
+....
T Consensus 244 ~~~~s 248 (980)
T KOG4284|consen 244 VAKCS 248 (980)
T ss_pred eeccC
Confidence 65443
No 35
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.9e-33 Score=260.26 Aligned_cols=243 Identities=26% Similarity=0.340 Sum_probs=212.9
Q ss_pred cCCCcccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC--CcEEEEcCCCCChhhHhHHHHHHHHHhhcccC
Q 015712 133 SGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNG--KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALL 210 (402)
Q Consensus 133 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g--~dvli~a~TGsGKTla~~lpil~~l~~~~~~~ 210 (402)
.+++.....+|++|+|.++++++|..+||.+|+.||..|+|.++.. +|+|.++..|+|||.||.+.+|.++...
T Consensus 82 pnsPlyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~---- 157 (477)
T KOG0332|consen 82 PNSPLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPD---- 157 (477)
T ss_pred CCCCccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCcc----
Confidence 4455566889999999999999999999999999999999999974 7999999999999999999999988763
Q ss_pred CCCCCCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhc-CCCCCC
Q 015712 211 PMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIED-RNVSCD 289 (402)
Q Consensus 211 ~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~-~~~~l~ 289 (402)
...|+++-|+||||||.|+.+++...+++.++...+.+.|.... +...+ ..+|+|||||.+++++.. ..+.+.
T Consensus 158 ---~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~-rG~~i--~eqIviGTPGtv~Dlm~klk~id~~ 231 (477)
T KOG0332|consen 158 ---VVVPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAK-RGNKL--TEQIVIGTPGTVLDLMLKLKCIDLE 231 (477)
T ss_pred ---ccCCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccc-cCCcc--hhheeeCCCccHHHHHHHHHhhChh
Confidence 36899999999999999999999999999988888877665211 11111 247999999999999988 788999
Q ss_pred CeeEEEEcCCCccccC-CCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhccccccCCceeeeeee
Q 015712 290 DIRYVVLDEADTLFDR-GFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAGKVTAMLLE 368 (402)
Q Consensus 290 ~l~~lVlDEad~~l~~-gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~~~~~~~~~~~~~~ 368 (402)
.++.+|+||||.|++. ||+++-..|.+.++ .+.|+++||||+...+..++..+++++..+...+.+..+..
T Consensus 232 kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP--------~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~ 303 (477)
T KOG0332|consen 232 KIKVFVLDEADVMIDTQGFQDQSIRIMRSLP--------RNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDN 303 (477)
T ss_pred hceEEEecchhhhhhcccccccchhhhhhcC--------CcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccc
Confidence 9999999999999985 79999999999998 47899999999999999999999999999988889999999
Q ss_pred cccceEEeecccHHHHHHHHHHHHhhc
Q 015712 369 MDQAEVFDLTESQDALKKKVVEAMDSL 395 (402)
Q Consensus 369 v~q~~~~~~~e~~~~~~~~l~~~l~~l 395 (402)
+.|-++.|..+ +++-..|.++++.+
T Consensus 304 IkQlyv~C~~~--~~K~~~l~~lyg~~ 328 (477)
T KOG0332|consen 304 IKQLYVLCACR--DDKYQALVNLYGLL 328 (477)
T ss_pred hhhheeeccch--hhHHHHHHHHHhhh
Confidence 99999998777 77777777766654
No 36
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=2.6e-31 Score=258.62 Aligned_cols=225 Identities=22% Similarity=0.314 Sum_probs=182.7
Q ss_pred hhhhcccCCCcccccccccCCCCHHHHHH----------HHHCCCCCCcHHHHHHHHHHH---------cCCcEEEEcCC
Q 015712 127 SEREKSSGSNAEVVSSFQELGLKAEMIKA----------VEKMGLFVPSEIQCVGIPAVL---------NGKSVVLSSGS 187 (402)
Q Consensus 127 ~~~~~~~~~~~~~~~~f~~l~l~~~l~~~----------l~~~g~~~pt~iQ~~~i~~il---------~g~dvli~a~T 187 (402)
.|.....+..+....-|+.+++++.+... +..+++.+.+|+|..++|.++ .++|+.|.|||
T Consensus 113 ~wva~p~t~~~nslq~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApT 192 (620)
T KOG0350|consen 113 GWVAIPETAQNNSLQIFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPT 192 (620)
T ss_pred ccccCceecCCCceeeeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCC
Confidence 34444444455556678888877665544 999999999999999999885 26899999999
Q ss_pred CCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcC-C
Q 015712 188 GSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNA-P 266 (402)
Q Consensus 188 GsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~-~ 266 (402)
|||||+||.|||++.+..+.- ...+||||+||++|+.|+++.+..++..+|+.|+.+.|..+.......+.+ .
T Consensus 193 GSGKTLaY~iPIVQ~L~~R~v------~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~ 266 (620)
T KOG0350|consen 193 GSGKTLAYVIPIVQLLSSRPV------KRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDP 266 (620)
T ss_pred CCCceeeehhHHHHHHccCCc------cceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCC
Confidence 999999999999999887532 457999999999999999999999999999999999999998877776654 2
Q ss_pred ----ccEEEeCchhhHHHhhc-CCCCCCCeeEEEEcCCCccccCCCHHHHHHHHHHhhhhh----cc-------------
Q 015712 267 ----IGMLIATPSEVLQHIED-RNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSA----LK------------- 324 (402)
Q Consensus 267 ----~~IlV~TP~~l~~~l~~-~~~~l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~~~~----~~------------- 324 (402)
+||||+|||||.+||.+ ..++|.+++|+||||||+|++..|..++..++..+.... .+
T Consensus 267 ~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~ 346 (620)
T KOG0350|consen 267 PECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTV 346 (620)
T ss_pred CccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchh
Confidence 38999999999999995 789999999999999999999999888888776654330 00
Q ss_pred ---------cCCCCceEEEEeeccCchhHHHHHHHhhccccc
Q 015712 325 ---------SNGQGFQTILVTAAIAEMLGEQLSSLMECLERD 357 (402)
Q Consensus 325 ---------~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~~~ 357 (402)
...++.+.+++|||++..-..+..--+..|...
T Consensus 347 ~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~ 388 (620)
T KOG0350|consen 347 LSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLHIPRLF 388 (620)
T ss_pred hHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcCCCceE
Confidence 013456789999999887777766666666443
No 37
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.97 E-value=1.6e-30 Score=277.88 Aligned_cols=198 Identities=21% Similarity=0.308 Sum_probs=164.1
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCch
Q 015712 147 GLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTE 226 (402)
Q Consensus 147 ~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~Ptr 226 (402)
.+++.+.++|.+.||..||++|.++|+.++.|+|+++++|||||||+||++|+++.+... .++++|||+|||
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~--------~~~~aL~l~Ptr 91 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD--------PRATALYLAPTK 91 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC--------CCcEEEEEcChH
Confidence 388999999999999999999999999999999999999999999999999999998753 367999999999
Q ss_pred HHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhc----CCCCCCCeeEEEEcCCCcc
Q 015712 227 ESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIED----RNVSCDDIRYVVLDEADTL 302 (402)
Q Consensus 227 eLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~----~~~~l~~l~~lVlDEad~~ 302 (402)
+||.|+...++.+. ..++++..+.|+.+.. +...+..+++|||+||++|...+.. +...++++++|||||||.|
T Consensus 92 aLa~q~~~~l~~l~-~~~i~v~~~~Gdt~~~-~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~ 169 (742)
T TIGR03817 92 ALAADQLRAVRELT-LRGVRPATYDGDTPTE-ERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSY 169 (742)
T ss_pred HHHHHHHHHHHHhc-cCCeEEEEEeCCCCHH-HHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhc
Confidence 99999999999987 4578888888887754 4455667799999999998754321 1223789999999999999
Q ss_pred ccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhccccc
Q 015712 303 FDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERD 357 (402)
Q Consensus 303 l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~~~ 357 (402)
.+ .|+.++..+++.+..... ..+.++|+|+||||+++... ++..++..+..+
T Consensus 170 ~g-~fg~~~~~il~rL~ri~~-~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~ 221 (742)
T TIGR03817 170 RG-VFGSHVALVLRRLRRLCA-RYGASPVFVLASATTADPAA-AASRLIGAPVVA 221 (742)
T ss_pred cC-ccHHHHHHHHHHHHHHHH-hcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEE
Confidence 75 489999999888865432 23457899999999998755 567777776443
No 38
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=5.3e-30 Score=254.54 Aligned_cols=252 Identities=23% Similarity=0.304 Sum_probs=211.1
Q ss_pred ccccccccc----CCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCC
Q 015712 137 AEVVSSFQE----LGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPM 212 (402)
Q Consensus 137 ~~~~~~f~~----l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~ 212 (402)
+.++.+|.+ +.++..+++.+...||..|+|+|.+|+|.++.++|++.|||||||||++|.+|+++.+..... ..
T Consensus 128 ~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~--~~ 205 (593)
T KOG0344|consen 128 PPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQ--EK 205 (593)
T ss_pred CCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhc--cc
Confidence 677888887 568899999999999999999999999999999999999999999999999999999987542 11
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHHHHhh--ccCCcceeeccCCCChH-HHHHHhcCCccEEEeCchhhHHHhhcCC--CC
Q 015712 213 KPMHPRAIVLCTTEESADQGFHMAKFIS--HCARLDSSMENGGVSSK-ALEDVSNAPIGMLIATPSEVLQHIEDRN--VS 287 (402)
Q Consensus 213 ~~~~~~~Lvl~PtreLa~Qi~~~~~~l~--~~~~~~v~~~~gg~~~~-~~~~~l~~~~~IlV~TP~~l~~~l~~~~--~~ 287 (402)
...|.+++|+.|||+||.|+++.+..+. ...++++..+....... .........++|+|+||.++..++..+. ++
T Consensus 206 ~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~id 285 (593)
T KOG0344|consen 206 HKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNID 285 (593)
T ss_pred CccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccch
Confidence 2467899999999999999999999998 55566665554432222 2222334457999999999999998865 78
Q ss_pred CCCeeEEEEcCCCccccC-CCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhccccccCCceeeee
Q 015712 288 CDDIRYVVLDEADTLFDR-GFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAGKVTAML 366 (402)
Q Consensus 288 l~~l~~lVlDEad~~l~~-gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~~~~~~~~~~~~ 366 (402)
+..|.++|+||+|.+++. +|..++..|+..+.. ++..+-+||||++..+++.+...+.++..+.+|.-....
T Consensus 286 l~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s-------~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~ 358 (593)
T KOG0344|consen 286 LSKVEWLVVDEADLLFEPEFFVEQLADIYSACQS-------PDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSAN 358 (593)
T ss_pred hheeeeEeechHHhhhChhhHHHHHHHHHHHhcC-------cchhhhhhhccccHHHHHHHHHhhccceeEEEecchhHh
Confidence 999999999999999999 899999999998864 688999999999999999999999999999999988899
Q ss_pred eecccceEEeecccHHHHHHHHHHHHhhccccCCC
Q 015712 367 LEMDQAEVFDLTESQDALKKKVVEAMDSLHLSAPG 401 (402)
Q Consensus 367 ~~v~q~~~~~~~e~~~~~~~~l~~~l~~l~~~~p~ 401 (402)
..|.|..+|+..+ ..+.-.+.+.++++ +.||
T Consensus 359 ~~V~QelvF~gse--~~K~lA~rq~v~~g--~~PP 389 (593)
T KOG0344|consen 359 ETVDQELVFCGSE--KGKLLALRQLVASG--FKPP 389 (593)
T ss_pred hhhhhhheeeecc--hhHHHHHHHHHhcc--CCCC
Confidence 9999999999888 44444444444444 5554
No 39
>PRK02362 ski2-like helicase; Provisional
Probab=99.96 E-value=3.8e-29 Score=268.97 Aligned_cols=181 Identities=22% Similarity=0.283 Sum_probs=159.2
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEE
Q 015712 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPA-VLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAI 220 (402)
Q Consensus 142 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~-il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~L 220 (402)
.|++++|++.+++++.+.||..|+|+|.+|++. +..|+|++++||||||||++|.+|++..+.. +.++|
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~----------~~kal 71 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR----------GGKAL 71 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc----------CCcEE
Confidence 589999999999999999999999999999998 7789999999999999999999999998853 66899
Q ss_pred EEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCC
Q 015712 221 VLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 300 (402)
Q Consensus 221 vl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad 300 (402)
||+||++||.|++..++.+.. .+++++.++|+...... . ...++|+|+||+++..+++++...++++++|||||+|
T Consensus 72 ~i~P~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~--~-l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H 147 (737)
T PRK02362 72 YIVPLRALASEKFEEFERFEE-LGVRVGISTGDYDSRDE--W-LGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVH 147 (737)
T ss_pred EEeChHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc--c-cCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECcc
Confidence 999999999999999987754 38889999998764432 2 2357999999999999998766678999999999999
Q ss_pred ccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCc
Q 015712 301 TLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 341 (402)
Q Consensus 301 ~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~ 341 (402)
.+.+.+++..++.++..+.... .+.|+|++|||+++
T Consensus 148 ~l~d~~rg~~le~il~rl~~~~-----~~~qii~lSATl~n 183 (737)
T PRK02362 148 LIDSANRGPTLEVTLAKLRRLN-----PDLQVVALSATIGN 183 (737)
T ss_pred ccCCCcchHHHHHHHHHHHhcC-----CCCcEEEEcccCCC
Confidence 9998889999999988876432 57899999999986
No 40
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.96 E-value=1.1e-28 Score=217.71 Aligned_cols=167 Identities=28% Similarity=0.469 Sum_probs=146.3
Q ss_pred cHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhccCC
Q 015712 165 SEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 244 (402)
Q Consensus 165 t~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~ 244 (402)
||+|.++|+.+.+|+|+++.||||+|||++|++|++..+... ...++||++|+++|+.|++..+..+....+
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~--------~~~~~lii~P~~~l~~q~~~~~~~~~~~~~ 72 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG--------KDARVLIIVPTRALAEQQFERLRKFFSNTN 72 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT--------SSSEEEEEESSHHHHHHHHHHHHHHTTTTT
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC--------CCceEEEEeecccccccccccccccccccc
Confidence 799999999999999999999999999999999999988763 245999999999999999999999988888
Q ss_pred cceeeccCCCChH-HHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCCCHHHHHHHHHHhhhhhc
Q 015712 245 LDSSMENGGVSSK-ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSAL 323 (402)
Q Consensus 245 ~~v~~~~gg~~~~-~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~~~~~ 323 (402)
+++..++|+.... .....+..+++|+|+||++|.+++..+..++.++++||+||+|.+.+.++...+..|+..+...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~-- 150 (169)
T PF00270_consen 73 VRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRF-- 150 (169)
T ss_dssp SSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTT--
T ss_pred cccccccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCC--
Confidence 8999999998865 4555566779999999999999999866677789999999999999888889999999888642
Q ss_pred ccCCCCceEEEEeeccCchhHH
Q 015712 324 KSNGQGFQTILVTAAIAEMLGE 345 (402)
Q Consensus 324 ~~~~~~~q~i~~SATl~~~v~~ 345 (402)
.+.|++++|||+++.+++
T Consensus 151 ----~~~~~i~~SAT~~~~~~~ 168 (169)
T PF00270_consen 151 ----KNIQIILLSATLPSNVEK 168 (169)
T ss_dssp ----TTSEEEEEESSSTHHHHH
T ss_pred ----CCCcEEEEeeCCChhHhh
Confidence 268999999999976654
No 41
>PRK00254 ski2-like helicase; Provisional
Probab=99.96 E-value=3.7e-28 Score=260.68 Aligned_cols=189 Identities=21% Similarity=0.247 Sum_probs=163.8
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEE
Q 015712 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPA-VLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAI 220 (402)
Q Consensus 142 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~-il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~L 220 (402)
.|+++++++.+.+.+.+.||..|+|+|.++++. +..|+|++++||||||||++|.+|++..+.. .+.++|
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~---------~~~~~l 72 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR---------EGGKAV 72 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh---------cCCeEE
Confidence 688999999999999999999999999999996 7899999999999999999999999998765 367999
Q ss_pred EEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCC
Q 015712 221 VLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 300 (402)
Q Consensus 221 vl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad 300 (402)
||+|+++||.|++..+..+.. .++++..++|+...... . ...++|+|+||+++..++.++...++++++|||||+|
T Consensus 73 ~l~P~~aLa~q~~~~~~~~~~-~g~~v~~~~Gd~~~~~~--~-~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H 148 (720)
T PRK00254 73 YLVPLKALAEEKYREFKDWEK-LGLRVAMTTGDYDSTDE--W-LGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIH 148 (720)
T ss_pred EEeChHHHHHHHHHHHHHHhh-cCCEEEEEeCCCCCchh--h-hccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcC
Confidence 999999999999998887643 58899999998765432 2 2458999999999999888766678999999999999
Q ss_pred ccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhc
Q 015712 301 TLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMEC 353 (402)
Q Consensus 301 ~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~ 353 (402)
.+.+.+++..++.++..+. .++|+|++|||+++. .++ ..|+..
T Consensus 149 ~l~~~~rg~~le~il~~l~--------~~~qiI~lSATl~n~-~~l-a~wl~~ 191 (720)
T PRK00254 149 LIGSYDRGATLEMILTHML--------GRAQILGLSATVGNA-EEL-AEWLNA 191 (720)
T ss_pred ccCCccchHHHHHHHHhcC--------cCCcEEEEEccCCCH-HHH-HHHhCC
Confidence 9998889999999998875 368999999999873 444 456654
No 42
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.95 E-value=3.5e-27 Score=256.77 Aligned_cols=188 Identities=22% Similarity=0.270 Sum_probs=155.3
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchH
Q 015712 148 LKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEE 227 (402)
Q Consensus 148 l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~Ptre 227 (402)
+++.+.+++.+ ||..|||+|.++|+.+++|+|++++||||||||++|++|+++.+...... +....++++|||+||++
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~-~~~~~~~~~LyIsPtra 95 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGRE-GELEDKVYCLYVSPLRA 95 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccc-cCCCCCeEEEEEcCHHH
Confidence 66777777766 79999999999999999999999999999999999999999988753211 11134789999999999
Q ss_pred HHHHHHHHHHH-------hh----ccC-CcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCC--CCCCeeE
Q 015712 228 SADQGFHMAKF-------IS----HCA-RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNV--SCDDIRY 293 (402)
Q Consensus 228 La~Qi~~~~~~-------l~----~~~-~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~--~l~~l~~ 293 (402)
|+.|+++.+.. +. ... ++++.+.+|+.+...+...+.++++|+|+||++|..++....+ .+.++++
T Consensus 96 La~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~ 175 (876)
T PRK13767 96 LNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKW 175 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCE
Confidence 99999875542 21 222 6788999999998888888888899999999999888865443 4789999
Q ss_pred EEEcCCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCc
Q 015712 294 VVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 341 (402)
Q Consensus 294 lVlDEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~ 341 (402)
|||||||.|++..++..+..++..+.... +...|+|++|||+++
T Consensus 176 VVIDE~H~l~~~~RG~~l~~~L~rL~~l~----~~~~q~IglSATl~~ 219 (876)
T PRK13767 176 VIVDEIHSLAENKRGVHLSLSLERLEELA----GGEFVRIGLSATIEP 219 (876)
T ss_pred EEEechhhhccCccHHHHHHHHHHHHHhc----CCCCeEEEEecccCC
Confidence 99999999998888888888888776532 247899999999987
No 43
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.95 E-value=8.6e-27 Score=246.51 Aligned_cols=183 Identities=17% Similarity=0.125 Sum_probs=146.9
Q ss_pred CCCCCCcHHHHHHHHHHHcCC-cEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEE-EcCchHHHHHHHHHH
Q 015712 159 MGLFVPSEIQCVGIPAVLNGK-SVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIV-LCTTEESADQGFHMA 236 (402)
Q Consensus 159 ~g~~~pt~iQ~~~i~~il~g~-dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lv-l~PtreLa~Qi~~~~ 236 (402)
.||. |||||.++|+.++.|+ ++++++|||||||.+|+++++.. .. ....+++|| ++|||+||.|+++.+
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~-------~~~~~~rLv~~vPtReLa~Qi~~~~ 82 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EI-------GAKVPRRLVYVVNRRTVVDQVTEEA 82 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-cc-------cccccceEEEeCchHHHHHHHHHHH
Confidence 4997 9999999999999998 57888999999999776555532 11 123555655 779999999999999
Q ss_pred HHhhccC-----------------------CcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCC------
Q 015712 237 KFISHCA-----------------------RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVS------ 287 (402)
Q Consensus 237 ~~l~~~~-----------------------~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~------ 287 (402)
..+++.. ++++.+++||.+...+...+..+++|||||+ +++.++.++
T Consensus 83 ~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~----D~i~sr~L~~gYg~~ 158 (844)
T TIGR02621 83 EKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTV----DMIGSRLLFSGYGCG 158 (844)
T ss_pred HHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECH----HHHcCCccccccccc
Confidence 9988754 4788999999999999999999999999994 566555542
Q ss_pred ----------CCCeeEEEEcCCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhccccc
Q 015712 288 ----------CDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERD 357 (402)
Q Consensus 288 ----------l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~~~ 357 (402)
++++++||||||| ++++|...+..|++.+... ....++|+++||||++.++..+...++.++..+
T Consensus 159 ~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp---~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i 233 (844)
T TIGR02621 159 FKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRP---PDFLPLRVVELTATSRTDGPDRTTLLSAEDYKH 233 (844)
T ss_pred cccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccC---cccccceEEEEecCCCccHHHHHHHHccCCcee
Confidence 6889999999999 6899999999999975210 001237999999999999998888888777654
Q ss_pred cC
Q 015712 358 NA 359 (402)
Q Consensus 358 ~~ 359 (402)
.+
T Consensus 234 ~V 235 (844)
T TIGR02621 234 PV 235 (844)
T ss_pred ec
Confidence 43
No 44
>PRK09401 reverse gyrase; Reviewed
Probab=99.95 E-value=1.1e-26 Score=256.71 Aligned_cols=208 Identities=14% Similarity=0.161 Sum_probs=155.1
Q ss_pred HHHHHHH-CCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHH
Q 015712 152 MIKAVEK-MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESAD 230 (402)
Q Consensus 152 l~~~l~~-~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~ 230 (402)
+.+.+.+ .|+ .||++|..++|.++.|+|++++||||+|||+ |+++++..+.. .++++|||+||++||.
T Consensus 69 ~~~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~---------~g~~alIL~PTreLa~ 137 (1176)
T PRK09401 69 FEKFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK---------KGKKSYIIFPTRLLVE 137 (1176)
T ss_pred HHHHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh---------cCCeEEEEeccHHHHH
Confidence 3445545 488 8999999999999999999999999999996 55666555533 4789999999999999
Q ss_pred HHHHHHHHhhccCCcceeeccCCCCh-----HHHHHHhc-CCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCcccc
Q 015712 231 QGFHMAKFISHCARLDSSMENGGVSS-----KALEDVSN-APIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 304 (402)
Q Consensus 231 Qi~~~~~~l~~~~~~~v~~~~gg~~~-----~~~~~~l~-~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~ 304 (402)
|++..++.++...++.+..++|+.+. ..+...+. .+++|+|+||++|.+++. .+....+++|||||||+|++
T Consensus 138 Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~ 215 (1176)
T PRK09401 138 QVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLK 215 (1176)
T ss_pred HHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhh
Confidence 99999999998888888777776542 22333344 468999999999999887 45566799999999999996
Q ss_pred -----------CCCH-HHHHHHHHHhhhhh----------------cccCCCCceEEEEeeccCch-hHHHHHHHhhccc
Q 015712 305 -----------RGFG-PEISKILNPLKDSA----------------LKSNGQGFQTILVTAAIAEM-LGEQLSSLMECLE 355 (402)
Q Consensus 305 -----------~gf~-~~i~~il~~l~~~~----------------~~~~~~~~q~i~~SATl~~~-v~~~~~~~l~~~~ 355 (402)
.||. +++..++..++... ........|+++||||+++. +.. .+++++.
T Consensus 216 ~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll 292 (1176)
T PRK09401 216 SSKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELL 292 (1176)
T ss_pred cccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccc
Confidence 6785 67888887775300 00011268999999999874 432 3455565
Q ss_pred cccCCceeeeeeecccceEE
Q 015712 356 RDNAGKVTAMLLEMDQAEVF 375 (402)
Q Consensus 356 ~~~~~~~~~~~~~v~q~~~~ 375 (402)
.+.++.......++.|.++.
T Consensus 293 ~~~v~~~~~~~rnI~~~yi~ 312 (1176)
T PRK09401 293 GFEVGSPVFYLRNIVDSYIV 312 (1176)
T ss_pred eEEecCcccccCCceEEEEE
Confidence 56555555555556665543
No 45
>PRK01172 ski2-like helicase; Provisional
Probab=99.95 E-value=7.8e-27 Score=249.12 Aligned_cols=189 Identities=14% Similarity=0.215 Sum_probs=160.2
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEE
Q 015712 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIV 221 (402)
Q Consensus 142 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lv 221 (402)
.|++++|++.+++.+...||. ++++|.++++.+.+|+|++++||||||||+++.++++..+.. +.++||
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~----------~~k~v~ 70 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA----------GLKSIY 70 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh----------CCcEEE
Confidence 588999999999999999996 999999999999999999999999999999999999987753 568999
Q ss_pred EcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCc
Q 015712 222 LCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 301 (402)
Q Consensus 222 l~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~ 301 (402)
++|+++||.|+++.+..+. ..++++...+|+...... . ...++|+|+||+++..++.++...++++++|||||||.
T Consensus 71 i~P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~--~-~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~ 146 (674)
T PRK01172 71 IVPLRSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPD--F-IKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHI 146 (674)
T ss_pred EechHHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChh--h-hccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchh
Confidence 9999999999999998764 357888888887664332 2 23579999999999999887777789999999999999
Q ss_pred cccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhh
Q 015712 302 LFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLME 352 (402)
Q Consensus 302 ~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~ 352 (402)
+.+.+++..++.++..+.... .+.|+|++|||+++. .++ ..|+.
T Consensus 147 l~d~~rg~~le~ll~~~~~~~-----~~~riI~lSATl~n~-~~l-a~wl~ 190 (674)
T PRK01172 147 IGDEDRGPTLETVLSSARYVN-----PDARILALSATVSNA-NEL-AQWLN 190 (674)
T ss_pred ccCCCccHHHHHHHHHHHhcC-----cCCcEEEEeCccCCH-HHH-HHHhC
Confidence 988889999998887765422 478999999999863 333 44554
No 46
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.94 E-value=1.4e-26 Score=243.60 Aligned_cols=197 Identities=19% Similarity=0.256 Sum_probs=173.1
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchH
Q 015712 148 LKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEE 227 (402)
Q Consensus 148 l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~Ptre 227 (402)
|++.+.+++.+. |..||+.|.+|||.+.+|+|+|+.||||||||++.++|++..+.... .+....+..||||+|.|+
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~--~~~~~~~i~~lYIsPLkA 84 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLG--KGKLEDGIYALYISPLKA 84 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhcc--CCCCCCceEEEEeCcHHH
Confidence 789999999999 99999999999999999999999999999999999999999999863 111235789999999999
Q ss_pred HHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCC--CCCCCeeEEEEcCCCccccC
Q 015712 228 SADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRN--VSCDDIRYVVLDEADTLFDR 305 (402)
Q Consensus 228 La~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~--~~l~~l~~lVlDEad~~l~~ 305 (402)
|.+.+.+.+...+...|+.+...+|+++..+..+...+++||||+||+.|.-++.... -.|.+++++||||+|.+.+.
T Consensus 85 Ln~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~s 164 (814)
T COG1201 85 LNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAES 164 (814)
T ss_pred HHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhcc
Confidence 9999999999999999999999999999999999999999999999999988887643 25899999999999999988
Q ss_pred CCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhcc
Q 015712 306 GFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECL 354 (402)
Q Consensus 306 gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~ 354 (402)
..+.++.--+.+|.+.. .+.|.|++|||..+. ..+.+|+..-
T Consensus 165 KRG~~Lsl~LeRL~~l~-----~~~qRIGLSATV~~~--~~varfL~g~ 206 (814)
T COG1201 165 KRGVQLALSLERLRELA-----GDFQRIGLSATVGPP--EEVAKFLVGF 206 (814)
T ss_pred ccchhhhhhHHHHHhhC-----cccEEEeehhccCCH--HHHHHHhcCC
Confidence 89999998888887654 379999999999853 3345555543
No 47
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.93 E-value=8.4e-25 Score=242.18 Aligned_cols=209 Identities=18% Similarity=0.171 Sum_probs=151.7
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHH
Q 015712 150 AEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESA 229 (402)
Q Consensus 150 ~~l~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa 229 (402)
.++.+.+.+.....||++|+.+++.++.|+|++++||||+|||+ |++|++..+.. .++++|||+||++||
T Consensus 65 ~~f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~---------~g~~vLIL~PTreLa 134 (1171)
T TIGR01054 65 KEFEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK---------KGKRCYIILPTTLLV 134 (1171)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh---------cCCeEEEEeCHHHHH
Confidence 34556666544458999999999999999999999999999997 77777766643 378999999999999
Q ss_pred HHHHHHHHHhhccCCccee---eccCCCChHHHHH---Hhc-CCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCcc
Q 015712 230 DQGFHMAKFISHCARLDSS---MENGGVSSKALED---VSN-APIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 302 (402)
Q Consensus 230 ~Qi~~~~~~l~~~~~~~v~---~~~gg~~~~~~~~---~l~-~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~ 302 (402)
.|+++.+..+....++.+. +++|+.+...+.. .+. .+++|||+||++|.+++... .. +++++||||||+|
T Consensus 135 ~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l--~~-~~~~iVvDEaD~~ 211 (1171)
T TIGR01054 135 IQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDEL--GP-KFDFIFVDDVDAL 211 (1171)
T ss_pred HHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHh--cC-CCCEEEEeChHhh
Confidence 9999999999887776543 4678888766533 233 45999999999999887652 22 8999999999999
Q ss_pred cc-----------CCCHHH-HHHHHHHhhhh------------h--cccCCCCc--eEEEEeec-cCchhHHHHHHHhhc
Q 015712 303 FD-----------RGFGPE-ISKILNPLKDS------------A--LKSNGQGF--QTILVTAA-IAEMLGEQLSSLMEC 353 (402)
Q Consensus 303 l~-----------~gf~~~-i~~il~~l~~~------------~--~~~~~~~~--q~i~~SAT-l~~~v~~~~~~~l~~ 353 (402)
++ +||.++ +..|+..++.. . .+..+... ++++|||| +|..+.. .++++
T Consensus 212 L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r~ 288 (1171)
T TIGR01054 212 LKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFRE 288 (1171)
T ss_pred hhccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHccc
Confidence 98 688764 66665432100 0 00001233 46789999 5665543 35666
Q ss_pred cccccCCceeeeeeecccceE
Q 015712 354 LERDNAGKVTAMLLEMDQAEV 374 (402)
Q Consensus 354 ~~~~~~~~~~~~~~~v~q~~~ 374 (402)
+..+.++.......++.|.+.
T Consensus 289 ll~~~v~~~~~~~r~I~~~~~ 309 (1171)
T TIGR01054 289 LLGFEVGGGSDTLRNVVDVYV 309 (1171)
T ss_pred ccceEecCccccccceEEEEE
Confidence 666666665555556666544
No 48
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.93 E-value=1.4e-24 Score=233.29 Aligned_cols=185 Identities=18% Similarity=0.217 Sum_probs=143.0
Q ss_pred cCCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEc
Q 015712 145 ELGLKAEMIKAVEK-MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLC 223 (402)
Q Consensus 145 ~l~l~~~l~~~l~~-~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~ 223 (402)
.|+....+...+.. +||..++|+|.++|++++.|+|+|+++|||+|||+||++|++. .++.+|||+
T Consensus 441 ~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~-------------~~GiTLVIS 507 (1195)
T PLN03137 441 NFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALI-------------CPGITLVIS 507 (1195)
T ss_pred CCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHH-------------cCCcEEEEe
Confidence 45666777777766 7999999999999999999999999999999999999999985 245799999
Q ss_pred CchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhc------CCccEEEeCchhhHH--HhhcC--CC-CCCCee
Q 015712 224 TTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSN------APIGMLIATPSEVLQ--HIEDR--NV-SCDDIR 292 (402)
Q Consensus 224 PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~------~~~~IlV~TP~~l~~--~l~~~--~~-~l~~l~ 292 (402)
|+++|+.++...+.. .++.+..+.|+....++...+. ..++|||+||++|.. .+.+. .+ ....+.
T Consensus 508 PLiSLmqDQV~~L~~----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~Ls 583 (1195)
T PLN03137 508 PLVSLIQDQIMNLLQ----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLA 583 (1195)
T ss_pred CHHHHHHHHHHHHHh----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccc
Confidence 999999854443333 3788889999988777655443 468999999999863 12211 11 235589
Q ss_pred EEEEcCCCccccCC--CHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhh
Q 015712 293 YVVLDEADTLFDRG--FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLME 352 (402)
Q Consensus 293 ~lVlDEad~~l~~g--f~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~ 352 (402)
+|||||||++++|| |++.+..+-. +... .+++|+++||||++..+...+...+.
T Consensus 584 lIVIDEAHcVSqWGhDFRpdYr~L~~-Lr~~-----fp~vPilALTATAT~~V~eDI~~~L~ 639 (1195)
T PLN03137 584 RFVIDEAHCVSQWGHDFRPDYQGLGI-LKQK-----FPNIPVLALTATATASVKEDVVQALG 639 (1195)
T ss_pred eeccCcchhhhhcccchHHHHHHHHH-HHHh-----CCCCCeEEEEecCCHHHHHHHHHHcC
Confidence 99999999999998 8887765421 1111 14789999999999998887666654
No 49
>PRK14701 reverse gyrase; Provisional
Probab=99.93 E-value=6.1e-25 Score=247.94 Aligned_cols=226 Identities=17% Similarity=0.173 Sum_probs=160.9
Q ss_pred HHHHHHHHH-CCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHH
Q 015712 150 AEMIKAVEK-MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEES 228 (402)
Q Consensus 150 ~~l~~~l~~-~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreL 228 (402)
.++.+.+++ .|| .||++|+.+|+.++.|+|++++||||+|||++++++++.... .+.++|||+||++|
T Consensus 66 ~~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~----------~g~~aLVl~PTreL 134 (1638)
T PRK14701 66 EEFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL----------KGKKCYIILPTTLL 134 (1638)
T ss_pred HHHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh----------cCCeEEEEECHHHH
Confidence 455667776 899 699999999999999999999999999999976666554322 36799999999999
Q ss_pred HHHHHHHHHHhhccCC--cceeeccCCCChHHHHH---HhcC-CccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCcc
Q 015712 229 ADQGFHMAKFISHCAR--LDSSMENGGVSSKALED---VSNA-PIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 302 (402)
Q Consensus 229 a~Qi~~~~~~l~~~~~--~~v~~~~gg~~~~~~~~---~l~~-~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~ 302 (402)
+.|++..++.++...+ +++..++|+.+...+.. .+.. .++|||+||++|.+++... . ..++++|||||||+|
T Consensus 135 a~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l-~-~~~i~~iVVDEAD~m 212 (1638)
T PRK14701 135 VKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM-K-HLKFDFIFVDDVDAF 212 (1638)
T ss_pred HHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH-h-hCCCCEEEEECceec
Confidence 9999999999887654 56778889988776643 3333 5899999999998877642 2 267999999999999
Q ss_pred cc-----------CCCHHHHHH----HHHH---------------hhhhhcccCCCCce-EEEEeeccCchhHHHHHHHh
Q 015712 303 FD-----------RGFGPEISK----ILNP---------------LKDSALKSNGQGFQ-TILVTAAIAEMLGEQLSSLM 351 (402)
Q Consensus 303 l~-----------~gf~~~i~~----il~~---------------l~~~~~~~~~~~~q-~i~~SATl~~~v~~~~~~~l 351 (402)
++ .||.+++.. |+.. +..... ..+...| ++++|||++.. .....++
T Consensus 213 l~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~ll~~SAT~~~r--~~~~~l~ 289 (1638)
T PRK14701 213 LKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIE-KIGNKIGCLIVASATGKAK--GDRVKLY 289 (1638)
T ss_pred cccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhh-hcCCCccEEEEEecCCCch--hHHHHHh
Confidence 87 588888864 4321 000000 0122345 67899999963 1223456
Q ss_pred hccccccCCceeeeeeecccceEEeecccHHHHHHHHHHHHhhc
Q 015712 352 ECLERDNAGKVTAMLLEMDQAEVFDLTESQDALKKKVVEAMDSL 395 (402)
Q Consensus 352 ~~~~~~~~~~~~~~~~~v~q~~~~~~~e~~~~~~~~l~~~l~~l 395 (402)
+++..+.++........+.|.++.. + ...+..|.+++..+
T Consensus 290 ~~~l~f~v~~~~~~lr~i~~~yi~~--~--~~~k~~L~~ll~~~ 329 (1638)
T PRK14701 290 RELLGFEVGSGRSALRNIVDVYLNP--E--KIIKEHVRELLKKL 329 (1638)
T ss_pred hcCeEEEecCCCCCCCCcEEEEEEC--C--HHHHHHHHHHHHhC
Confidence 7777777766665556666665432 2 11124566666543
No 50
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.93 E-value=4.1e-25 Score=226.47 Aligned_cols=171 Identities=19% Similarity=0.256 Sum_probs=133.6
Q ss_pred HCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHH
Q 015712 158 KMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK 237 (402)
Q Consensus 158 ~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~ 237 (402)
.+||..|+|+|.++|++++.|+|+++++|||+|||++|++|++. .+..+|||+||++|+.|+...+.
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~-------------~~~~~lVi~P~~~L~~dq~~~l~ 72 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALC-------------SDGITLVISPLISLMEDQVLQLK 72 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHH-------------cCCcEEEEecHHHHHHHHHHHHH
Confidence 46999999999999999999999999999999999999999875 24579999999999999888776
Q ss_pred HhhccCCcceeeccCCCChHHHHHH----hcCCccEEEeCchhhHHHhh-cCCC-CCCCeeEEEEcCCCccccCC--CHH
Q 015712 238 FISHCARLDSSMENGGVSSKALEDV----SNAPIGMLIATPSEVLQHIE-DRNV-SCDDIRYVVLDEADTLFDRG--FGP 309 (402)
Q Consensus 238 ~l~~~~~~~v~~~~gg~~~~~~~~~----l~~~~~IlV~TP~~l~~~l~-~~~~-~l~~l~~lVlDEad~~l~~g--f~~ 309 (402)
.+ ++.+..+.|+....++... ....++|+++||+++..... ...+ ...++++|||||||++++|| |..
T Consensus 73 ~~----gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~ 148 (470)
T TIGR00614 73 AS----GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRP 148 (470)
T ss_pred Hc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHH
Confidence 53 6777888887776544332 23458999999999754321 1112 56789999999999999987 677
Q ss_pred HHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHh
Q 015712 310 EISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLM 351 (402)
Q Consensus 310 ~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l 351 (402)
.+..+..... . .++.|++++|||+++.+...+...+
T Consensus 149 ~~~~l~~l~~-~-----~~~~~~l~lTAT~~~~~~~di~~~l 184 (470)
T TIGR00614 149 DYKALGSLKQ-K-----FPNVPIMALTATASPSVREDILRQL 184 (470)
T ss_pred HHHHHHHHHH-H-----cCCCceEEEecCCCHHHHHHHHHHc
Confidence 7665432221 1 1478999999999998877666654
No 51
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.91 E-value=1.1e-23 Score=226.62 Aligned_cols=198 Identities=23% Similarity=0.324 Sum_probs=166.8
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchH
Q 015712 148 LKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEE 227 (402)
Q Consensus 148 l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~Ptre 227 (402)
....+..++.+.|+..++.+|.+|+..+.+|+|+||+++||||||++|++||++.++++. ..+||||.||++
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~--------~a~AL~lYPtnA 126 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDP--------SARALLLYPTNA 126 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCc--------CccEEEEechhh
Confidence 344567888899999999999999999999999999999999999999999999999853 348999999999
Q ss_pred HHHHHHHHHHHhhccCC--cceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcC----CCCCCCeeEEEEcCCCc
Q 015712 228 SADQGFHMAKFISHCAR--LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR----NVSCDDIRYVVLDEADT 301 (402)
Q Consensus 228 La~Qi~~~~~~l~~~~~--~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~----~~~l~~l~~lVlDEad~ 301 (402)
||+.+...+..+....+ +.+..+.|+.........+.++++||++||..|..++-++ ...+.+++||||||+|.
T Consensus 127 La~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHt 206 (851)
T COG1205 127 LANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHT 206 (851)
T ss_pred hHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEeccee
Confidence 99999999998887777 7888889999888887888999999999999998855432 34567899999999998
Q ss_pred cccCC-CHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhccccc
Q 015712 302 LFDRG-FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERD 357 (402)
Q Consensus 302 ~l~~g-f~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~~~ 357 (402)
+ .| |+.++..++++|.... +..+.++|+|..|||+.+. .+++..+.......
T Consensus 207 Y--rGv~GS~vA~llRRL~~~~-~~~~~~~q~i~~SAT~~np-~e~~~~l~~~~f~~ 259 (851)
T COG1205 207 Y--RGVQGSEVALLLRRLLRRL-RRYGSPLQIICTSATLANP-GEFAEELFGRDFEV 259 (851)
T ss_pred c--cccchhHHHHHHHHHHHHH-hccCCCceEEEEeccccCh-HHHHHHhcCCccee
Confidence 7 44 9999999999997654 3334689999999999874 55556666665444
No 52
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.91 E-value=9.7e-24 Score=222.19 Aligned_cols=176 Identities=19% Similarity=0.261 Sum_probs=141.0
Q ss_pred HHHHH-CCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHH
Q 015712 154 KAVEK-MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQG 232 (402)
Q Consensus 154 ~~l~~-~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi 232 (402)
+.|++ +||..++++|.++|++++.|+|+++++|||+|||++|++|++. .+..+|||+|+++|+.|.
T Consensus 3 ~~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~-------------~~g~~lVisPl~sL~~dq 69 (591)
T TIGR01389 3 QVLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALL-------------LKGLTVVISPLISLMKDQ 69 (591)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHH-------------cCCcEEEEcCCHHHHHHH
Confidence 34555 7999999999999999999999999999999999999999874 245789999999999998
Q ss_pred HHHHHHhhccCCcceeeccCCCChHHHHHH----hcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCC--
Q 015712 233 FHMAKFISHCARLDSSMENGGVSSKALEDV----SNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRG-- 306 (402)
Q Consensus 233 ~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~----l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~g-- 306 (402)
...++.+ ++.+..+.++.+....... ....++|+++||+++........+...++++|||||||++.+||
T Consensus 70 ~~~l~~~----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~ 145 (591)
T TIGR01389 70 VDQLRAA----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHD 145 (591)
T ss_pred HHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCc
Confidence 8877764 6788888888876654432 34568999999999865433334556789999999999999887
Q ss_pred CHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhh
Q 015712 307 FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLME 352 (402)
Q Consensus 307 f~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~ 352 (402)
|.+.+..+....... ++.+++++|||.+..+...+..++.
T Consensus 146 frp~y~~l~~l~~~~------~~~~vi~lTAT~~~~~~~~i~~~l~ 185 (591)
T TIGR01389 146 FRPEYQRLGSLAERF------PQVPRIALTATADAETRQDIRELLR 185 (591)
T ss_pred cHHHHHHHHHHHHhC------CCCCEEEEEeCCCHHHHHHHHHHcC
Confidence 777776665433221 3566999999999998887777765
No 53
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.91 E-value=1.8e-23 Score=220.24 Aligned_cols=182 Identities=16% Similarity=0.222 Sum_probs=137.9
Q ss_pred CCCHHHHHHHHH-CCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCc
Q 015712 147 GLKAEMIKAVEK-MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTT 225 (402)
Q Consensus 147 ~l~~~l~~~l~~-~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~Pt 225 (402)
++.......|++ +||..|+|+|.++|++++.|+|+++++|||+|||++|++|++. ....+|||+|+
T Consensus 8 ~~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~-------------~~g~tlVisPl 74 (607)
T PRK11057 8 NLESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALV-------------LDGLTLVVSPL 74 (607)
T ss_pred CchhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHH-------------cCCCEEEEecH
Confidence 344444555655 6999999999999999999999999999999999999999984 24479999999
Q ss_pred hHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHH----hcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCc
Q 015712 226 EESADQGFHMAKFISHCARLDSSMENGGVSSKALEDV----SNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 301 (402)
Q Consensus 226 reLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~----l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~ 301 (402)
++|+.|+...+..+ ++.+.++.++.....+... .....+|+++||+++........+...++++|||||||+
T Consensus 75 ~sL~~dqv~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~ 150 (607)
T PRK11057 75 ISLMKDQVDQLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHC 150 (607)
T ss_pred HHHHHHHHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccc
Confidence 99999988877764 6777777777766554332 234578999999998743222233445789999999999
Q ss_pred cccCC--CHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHh
Q 015712 302 LFDRG--FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLM 351 (402)
Q Consensus 302 ~l~~g--f~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l 351 (402)
+.+|| |.+.+..+-. +... .++.|++++|||++..+...+...+
T Consensus 151 i~~~G~~fr~~y~~L~~-l~~~-----~p~~~~v~lTAT~~~~~~~di~~~l 196 (607)
T PRK11057 151 ISQWGHDFRPEYAALGQ-LRQR-----FPTLPFMALTATADDTTRQDIVRLL 196 (607)
T ss_pred cccccCcccHHHHHHHH-HHHh-----CCCCcEEEEecCCChhHHHHHHHHh
Confidence 99987 7776655432 2211 1478999999999998776554443
No 54
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.90 E-value=8.3e-23 Score=225.74 Aligned_cols=181 Identities=17% Similarity=0.138 Sum_probs=145.9
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHHHHcC------CcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEc
Q 015712 150 AEMIKAVEKMGLFVPSEIQCVGIPAVLNG------KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLC 223 (402)
Q Consensus 150 ~~l~~~l~~~g~~~pt~iQ~~~i~~il~g------~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~ 223 (402)
.+..+....++| .||++|..||+.++.+ +|++++|+||+|||.+|+.+++..+. .+.+++||+
T Consensus 588 ~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~----------~g~qvlvLv 656 (1147)
T PRK10689 588 EQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE----------NHKQVAVLV 656 (1147)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH----------cCCeEEEEe
Confidence 445566778899 7999999999999987 89999999999999999988877653 478999999
Q ss_pred CchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhc----CCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCC
Q 015712 224 TTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSN----APIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 299 (402)
Q Consensus 224 PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~----~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEa 299 (402)
||++||.|++..+.......++++.+++|+.+..++...+. ..++||||||+.+ . ..+.+.++++|||||+
T Consensus 657 PT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~-~~v~~~~L~lLVIDEa 731 (1147)
T PRK10689 657 PTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----Q-SDVKWKDLGLLIVDEE 731 (1147)
T ss_pred CcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----h-CCCCHhhCCEEEEech
Confidence 99999999999998866666788888898888777665442 4689999999643 2 3456789999999999
Q ss_pred CccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhccccccC
Q 015712 300 DTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNA 359 (402)
Q Consensus 300 d~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~~~~~ 359 (402)
|++ |+. ....+..++ .++|+++||||+.+.+..++...++++..+..
T Consensus 732 hrf---G~~--~~e~lk~l~--------~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~ 778 (1147)
T PRK10689 732 HRF---GVR--HKERIKAMR--------ADVDILTLTATPIPRTLNMAMSGMRDLSIIAT 778 (1147)
T ss_pred hhc---chh--HHHHHHhcC--------CCCcEEEEcCCCCHHHHHHHHhhCCCcEEEec
Confidence 986 332 234444444 47899999999988888888888888766643
No 55
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.90 E-value=1.5e-22 Score=219.51 Aligned_cols=181 Identities=17% Similarity=0.137 Sum_probs=141.5
Q ss_pred CCHHHHHHHHH-CCCCCCcHHHHHHHHHHHcC------CcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEE
Q 015712 148 LKAEMIKAVEK-MGLFVPSEIQCVGIPAVLNG------KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAI 220 (402)
Q Consensus 148 l~~~l~~~l~~-~g~~~pt~iQ~~~i~~il~g------~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~L 220 (402)
.+..+++.+.+ +|| .||++|..||+.++.+ +|++++|+||+|||++|++|++..+.. +.+++
T Consensus 436 ~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~----------g~qvl 504 (926)
T TIGR00580 436 PDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD----------GKQVA 504 (926)
T ss_pred CCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh----------CCeEE
Confidence 44555555544 689 5999999999999875 799999999999999999999988753 67999
Q ss_pred EEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHH---hc-CCccEEEeCchhhHHHhhcCCCCCCCeeEEEE
Q 015712 221 VLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDV---SN-APIGMLIATPSEVLQHIEDRNVSCDDIRYVVL 296 (402)
Q Consensus 221 vl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~---l~-~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVl 296 (402)
||+||++||.|++..+..+....++++..++|+.+..++... +. ..++||||||.. + ...+.+.++++|||
T Consensus 505 vLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~l----l-~~~v~f~~L~llVI 579 (926)
T TIGR00580 505 VLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKL----L-QKDVKFKDLGLLII 579 (926)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHH----h-hCCCCcccCCEEEe
Confidence 999999999999999998877778899899888775554433 33 358999999942 2 34567899999999
Q ss_pred cCCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhccccc
Q 015712 297 DEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERD 357 (402)
Q Consensus 297 DEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~~~ 357 (402)
||+|++ +......+..++ .++|+++||||+.+.+..+....+.++..+
T Consensus 580 DEahrf-----gv~~~~~L~~~~--------~~~~vL~~SATpiprtl~~~l~g~~d~s~I 627 (926)
T TIGR00580 580 DEEQRF-----GVKQKEKLKELR--------TSVDVLTLSATPIPRTLHMSMSGIRDLSII 627 (926)
T ss_pred eccccc-----chhHHHHHHhcC--------CCCCEEEEecCCCHHHHHHHHhcCCCcEEE
Confidence 999984 334445555443 478999999998877766655555555444
No 56
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.90 E-value=7.5e-23 Score=217.62 Aligned_cols=187 Identities=17% Similarity=0.254 Sum_probs=157.9
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHHH-cCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCc
Q 015712 147 GLKAEMIKAVEKMGLFVPSEIQCVGIPAVL-NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTT 225 (402)
Q Consensus 147 ~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il-~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~Pt 225 (402)
.+++.+...+...|+..+++-|+.++.... .|+|+|+++|||||||+..++.++..+.+ .+.++|||||+
T Consensus 15 ~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~---------~~~k~vYivPl 85 (766)
T COG1204 15 KLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLE---------GGGKVVYIVPL 85 (766)
T ss_pred cccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHh---------cCCcEEEEeCh
Confidence 377888899999999999999998888754 56999999999999999999999999987 36799999999
Q ss_pred hHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccC
Q 015712 226 EESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDR 305 (402)
Q Consensus 226 reLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~ 305 (402)
++||.+++..++.+ ...|++|...+|+...... . -.+++|||+||+++-.++++....+..+++|||||+|.+.|.
T Consensus 86 kALa~Ek~~~~~~~-~~~GirV~~~TgD~~~~~~--~-l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~ 161 (766)
T COG1204 86 KALAEEKYEEFSRL-EELGIRVGISTGDYDLDDE--R-LARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDR 161 (766)
T ss_pred HHHHHHHHHHhhhH-HhcCCEEEEecCCcccchh--h-hccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCc
Confidence 99999999999944 4559999999999886542 1 235899999999999999888778899999999999988777
Q ss_pred CCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhc
Q 015712 306 GFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMEC 353 (402)
Q Consensus 306 gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~ 353 (402)
..++.++.|+..+...+ ..+|++++|||+|+- .+ +..|++-
T Consensus 162 ~RG~~lE~iv~r~~~~~-----~~~rivgLSATlpN~-~e-vA~wL~a 202 (766)
T COG1204 162 TRGPVLESIVARMRRLN-----ELIRIVGLSATLPNA-EE-VADWLNA 202 (766)
T ss_pred ccCceehhHHHHHHhhC-----cceEEEEEeeecCCH-HH-HHHHhCC
Confidence 78999999999887644 458999999999983 22 4455544
No 57
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.90 E-value=4.4e-23 Score=217.81 Aligned_cols=149 Identities=13% Similarity=0.221 Sum_probs=133.6
Q ss_pred cccCCCCHHHHHHHH-----HCCCCCC---cHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCC
Q 015712 143 FQELGLKAEMIKAVE-----KMGLFVP---SEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKP 214 (402)
Q Consensus 143 f~~l~l~~~l~~~l~-----~~g~~~p---t~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~ 214 (402)
-+.|++..++.+.+. .+||..| +|+|.++++.+..|+++|++++||+|||++|++|++..++.
T Consensus 64 ~eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~--------- 134 (970)
T PRK12899 64 PEAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT--------- 134 (970)
T ss_pred HHHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh---------
Confidence 357788888888776 7899999 99999999999999999999999999999999999988764
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhh-HHHhhcCCCCCC----
Q 015712 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV-LQHIEDRNVSCD---- 289 (402)
Q Consensus 215 ~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l-~~~l~~~~~~l~---- 289 (402)
+..++||+||++||.|++.++..+..++++++++++||.+...+...+ +++|+||||++| +++++.+.+.++
T Consensus 135 -g~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~ 211 (970)
T PRK12899 135 -GKPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATRKEEQ 211 (970)
T ss_pred -cCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcCHHHh
Confidence 224899999999999999999999999999999999999998887666 489999999999 999998766665
Q ss_pred ---CeeEEEEcCCCccc
Q 015712 290 ---DIRYVVLDEADTLF 303 (402)
Q Consensus 290 ---~l~~lVlDEad~~l 303 (402)
.+.++||||||.|+
T Consensus 212 vqr~~~~~IIDEADsmL 228 (970)
T PRK12899 212 VGRGFYFAIIDEVDSIL 228 (970)
T ss_pred hcccccEEEEechhhhh
Confidence 55899999999986
No 58
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.89 E-value=2.9e-22 Score=213.40 Aligned_cols=165 Identities=18% Similarity=0.226 Sum_probs=131.6
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHHcC------CcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCc
Q 015712 152 MIKAVEKMGLFVPSEIQCVGIPAVLNG------KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTT 225 (402)
Q Consensus 152 l~~~l~~~g~~~pt~iQ~~~i~~il~g------~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~Pt 225 (402)
+......++| .||++|..+++.+..+ +++|++|+||||||++|++|++..+. .+.+++|++||
T Consensus 251 ~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~----------~g~q~lilaPT 319 (681)
T PRK10917 251 LKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE----------AGYQAALMAPT 319 (681)
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH----------cCCeEEEEecc
Confidence 3445566788 7999999999999886 48999999999999999999998775 37899999999
Q ss_pred hHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHH---HhcC-CccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCc
Q 015712 226 EESADQGFHMAKFISHCARLDSSMENGGVSSKALED---VSNA-PIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 301 (402)
Q Consensus 226 reLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~---~l~~-~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~ 301 (402)
++||.|++..++.+....++++.+++|+.+...+.. .+.. .++|+||||+.+.+ .+.+.+++++||||+|+
T Consensus 320 ~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~Hr 394 (681)
T PRK10917 320 EILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQHR 394 (681)
T ss_pred HHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechhh
Confidence 999999999999998888999999999998654433 3333 59999999987743 34578999999999998
Q ss_pred cccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHH
Q 015712 302 LFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 345 (402)
Q Consensus 302 ~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~ 345 (402)
+ +......+... +..+++++||||..+....
T Consensus 395 f-----g~~qr~~l~~~--------~~~~~iL~~SATp~prtl~ 425 (681)
T PRK10917 395 F-----GVEQRLALREK--------GENPHVLVMTATPIPRTLA 425 (681)
T ss_pred h-----hHHHHHHHHhc--------CCCCCEEEEeCCCCHHHHH
Confidence 6 22223333322 1368999999998765443
No 59
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.88 E-value=3.9e-23 Score=198.55 Aligned_cols=218 Identities=23% Similarity=0.381 Sum_probs=187.9
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhccc-----CC---
Q 015712 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEAL-----LP--- 211 (402)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~-----~~--- 211 (402)
++.|++||+-+++-.+..++.+.-||.+|.++||.|+.|.|++..|.||||||=+|.+|+++.+...... .+
T Consensus 1 m~af~e~gv~pel~~a~~e~dw~lptdvqaeaiplilgggdvlmaaetgsgktgaf~lpilqiv~etlrd~~egk~gk~~ 80 (725)
T KOG0349|consen 1 MTAFEEFGVLPELGMATDELDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQIVWETLRDLEEGKAGKGG 80 (725)
T ss_pred CcchHhhCcchHhhhhhhhhccccccccccccccEEecCCcEEEEeccCCCCccceehhhHHHHHHHHHhHhhcccCCCc
Confidence 4579999999999999999999999999999999999999999999999999999999999876531100 00
Q ss_pred --------------------------------------------------------------------------------
Q 015712 212 -------------------------------------------------------------------------------- 211 (402)
Q Consensus 212 -------------------------------------------------------------------------------- 211 (402)
T Consensus 81 ~~~ga~~~w~mn~~Drg~alaI~~dGL~CqSre~KeWhGcRaT~Gl~gkGK~YyEvtitd~GLCRVGWsT~qasLdlGt~ 160 (725)
T KOG0349|consen 81 MADGAPREWKMNKQDRGLALAIDEDGLACQSREKKEWHGCRATAGLYGKGKYYYEVTITDKGLCRVGWSTLQASLDLGTG 160 (725)
T ss_pred ccCCCccccccCccccCceeeEcCCccccchhHHhhhhccccccccccCceEEEEEEeccCceeeechhhcccccccCcc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 015712 212 -------------------------------------------------------------------------------- 211 (402)
Q Consensus 212 -------------------------------------------------------------------------------- 211 (402)
T Consensus 161 ~~gFGfGGTGkKS~nkqFDdYGe~Ft~~DvIGCyLDld~~~v~fsKNG~~lg~AF~ip~~~kn~~lfPAvvlkNael~fN 240 (725)
T KOG0349|consen 161 LDGFGFGGTGKKSTNKQFDDYGEPFTLNDVIGCYLDLDSRTVWFSKNGEQLGAAFSIPVKYKNSNLFPAVVLKNAELSFN 240 (725)
T ss_pred ccccccCccCccccccccccccCcccccceeeEEEeccCceEEEecCccccceeEEcChhhcccccchheeeccceEEEe
Confidence
Q ss_pred -----------------------------------------CCCCCCeEEEEcCchHHHHHHHHHHHHhhccC---Ccce
Q 015712 212 -----------------------------------------MKPMHPRAIVLCTTEESADQGFHMAKFISHCA---RLDS 247 (402)
Q Consensus 212 -----------------------------------------~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~---~~~v 247 (402)
..++.|.+||+-|+||||.|.++.++.+..++ .++.
T Consensus 241 FG~~~FKfpPgngFva~s~Ap~e~~~~n~~~g~~a~~~~~k~~pNap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~ 320 (725)
T KOG0349|consen 241 FGSQPFKFPPGNGFVAVSDAPNEHSKANVNWGSYAEAPSAKPAPNAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRS 320 (725)
T ss_pred cCCCccccCCCCceEEeecCCccccccCccccccccCcccccCCCCcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhh
Confidence 01234559999999999999999777765444 4677
Q ss_pred eeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCCCHHHHHHHHHHhhhhhcccCC
Q 015712 248 SMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNG 327 (402)
Q Consensus 248 ~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~~~~~~~~~ 327 (402)
.++.||.....|...+..+.+|+||||+|+.+.+..+.+.+.+++++|+||||.++..|+.+.|.++...++... +++
T Consensus 321 lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~crFlvlDead~lL~qgy~d~I~r~h~qip~~t--sdg 398 (725)
T KOG0349|consen 321 LLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCRFLVLDEADLLLGQGYDDKIYRFHGQIPHMT--SDG 398 (725)
T ss_pred hhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeEEEEecchhhhhhcccHHHHHHHhccchhhh--cCC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999988765 345
Q ss_pred CCceEEEEeeccCc-hhHHHHHHHhhccccccC
Q 015712 328 QGFQTILVTAAIAE-MLGEQLSSLMECLERDNA 359 (402)
Q Consensus 328 ~~~q~i~~SATl~~-~v~~~~~~~l~~~~~~~~ 359 (402)
...|.+++|||+.. +|..+..++|..|.-+..
T Consensus 399 ~rlq~~vCsatlh~feVkk~~ervmhfptwVdL 431 (725)
T KOG0349|consen 399 FRLQSPVCSATLHIFEVKKVGERVMHFPTWVDL 431 (725)
T ss_pred cccccceeeeEEeEEEeeehhhhhccCceeEec
Confidence 67899999999976 788888889988876643
No 60
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.88 E-value=8.7e-22 Score=208.29 Aligned_cols=169 Identities=15% Similarity=0.198 Sum_probs=132.1
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHHHHcC------CcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEc
Q 015712 150 AEMIKAVEKMGLFVPSEIQCVGIPAVLNG------KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLC 223 (402)
Q Consensus 150 ~~l~~~l~~~g~~~pt~iQ~~~i~~il~g------~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~ 223 (402)
..+.+.+..++| .||++|..+|+.++.+ .+.+++|+||||||++|++|++..+. .+.+++|++
T Consensus 223 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~----------~g~qvlila 291 (630)
T TIGR00643 223 ELLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE----------AGYQVALMA 291 (630)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH----------cCCcEEEEC
Confidence 345567788999 7999999999999876 36899999999999999999998775 377999999
Q ss_pred CchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHH---Hh-cCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCC
Q 015712 224 TTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED---VS-NAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 299 (402)
Q Consensus 224 PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~---~l-~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEa 299 (402)
||++||.|+++.++.+....++++++++|+.....+.. .+ ...++||||||+.+.+ .+.+.++++|||||+
T Consensus 292 PT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEa 366 (630)
T TIGR00643 292 PTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQ 366 (630)
T ss_pred CHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEech
Confidence 99999999999999988888999999999988665333 23 3458999999997743 355789999999999
Q ss_pred CccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhH
Q 015712 300 DTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLG 344 (402)
Q Consensus 300 d~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~ 344 (402)
|++. ..+...+...... ...+++++||||+.+...
T Consensus 367 H~fg----~~qr~~l~~~~~~------~~~~~~l~~SATp~prtl 401 (630)
T TIGR00643 367 HRFG----VEQRKKLREKGQG------GFTPHVLVMSATPIPRTL 401 (630)
T ss_pred hhcc----HHHHHHHHHhccc------CCCCCEEEEeCCCCcHHH
Confidence 9852 1122222222210 025799999999766433
No 61
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.88 E-value=2.1e-22 Score=199.42 Aligned_cols=199 Identities=21% Similarity=0.237 Sum_probs=168.3
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCe
Q 015712 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPA-VLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPR 218 (402)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~-il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 218 (402)
....+++.+++.+.+.|...|++.+.|+|..++.+ ++.|.|.+++++|+||||++.-++-+..++. .+.+
T Consensus 193 r~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~---------~g~K 263 (830)
T COG1202 193 RVPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS---------GGKK 263 (830)
T ss_pred cccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh---------CCCe
Confidence 45678999999999999999999999999999998 7899999999999999999999999988886 5789
Q ss_pred EEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHH----HhcCCccEEEeCchhhHHHhhcCCCCCCCeeEE
Q 015712 219 AIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED----VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYV 294 (402)
Q Consensus 219 ~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~----~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~l 294 (402)
.|||+|..+||+|-+..|+.-...+++++.+-+|-........ .....+||||||-+-+-.+++.+ -.+.++..+
T Consensus 264 mlfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtV 342 (830)
T COG1202 264 MLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTV 342 (830)
T ss_pred EEEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceE
Confidence 9999999999999999998877778888887777655443321 22346899999999998888876 678999999
Q ss_pred EEcCCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhcc
Q 015712 295 VLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECL 354 (402)
Q Consensus 295 VlDEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~ 354 (402)
||||+|.+-|...++-+.-++.+|+..+ ++.|+|.+|||+.+. .++++.+--.+
T Consensus 343 VIDEiHtL~deERG~RLdGLI~RLr~l~-----~~AQ~i~LSATVgNp-~elA~~l~a~l 396 (830)
T COG1202 343 VIDEIHTLEDEERGPRLDGLIGRLRYLF-----PGAQFIYLSATVGNP-EELAKKLGAKL 396 (830)
T ss_pred EeeeeeeccchhcccchhhHHHHHHHhC-----CCCeEEEEEeecCCh-HHHHHHhCCee
Confidence 9999998877778888999999988765 589999999999875 44555554444
No 62
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.87 E-value=8.6e-22 Score=219.40 Aligned_cols=164 Identities=18% Similarity=0.257 Sum_probs=130.2
Q ss_pred EEcCCCCChhhHhHHHHHHHHHhhcccC---CCCCCCCeEEEEcCchHHHHHHHHHHHH----hh--------ccCCcce
Q 015712 183 LSSGSGSGRTLAYLLPLVQMLRRDEALL---PMKPMHPRAIVLCTTEESADQGFHMAKF----IS--------HCARLDS 247 (402)
Q Consensus 183 i~a~TGsGKTla~~lpil~~l~~~~~~~---~~~~~~~~~Lvl~PtreLa~Qi~~~~~~----l~--------~~~~~~v 247 (402)
|+||||||||++|.+|+++.+....... .....+.++|||+|+++|+.|+++.++. +. ...++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5799999999999999999998643110 0112468999999999999999998764 21 1247889
Q ss_pred eeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcC-CCCCCCeeEEEEcCCCccccCCCHHHHHHHHHHhhhhhcccC
Q 015712 248 SMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR-NVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSN 326 (402)
Q Consensus 248 ~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~-~~~l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~~~~~~~~ 326 (402)
...+|+.+..++...+.++++|||+||++|..++.++ ...+++|++|||||+|.|++..++.++..++.+|....
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~---- 156 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALL---- 156 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhC----
Confidence 9999999999888888888999999999999988654 34689999999999999998777788777777776432
Q ss_pred CCCceEEEEeeccCchhHHHHHHHhh
Q 015712 327 GQGFQTILVTAAIAEMLGEQLSSLME 352 (402)
Q Consensus 327 ~~~~q~i~~SATl~~~v~~~~~~~l~ 352 (402)
+.+.|+|+||||+++ ..++ ..|+.
T Consensus 157 ~~~~QrIgLSATI~n-~eev-A~~L~ 180 (1490)
T PRK09751 157 HTSAQRIGLSATVRS-ASDV-AAFLG 180 (1490)
T ss_pred CCCCeEEEEEeeCCC-HHHH-HHHhc
Confidence 246899999999987 3444 45664
No 63
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.87 E-value=8.6e-21 Score=169.70 Aligned_cols=187 Identities=30% Similarity=0.410 Sum_probs=152.0
Q ss_pred HCCCCCCcHHHHHHHHHHHcC-CcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHH
Q 015712 158 KMGLFVPSEIQCVGIPAVLNG-KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMA 236 (402)
Q Consensus 158 ~~g~~~pt~iQ~~~i~~il~g-~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~ 236 (402)
..++..++++|.+++..+..+ +.++++++||+|||.+++.+++..+... ....+||++||+.++.|....+
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~--------~~~~~l~~~p~~~~~~~~~~~~ 74 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRG--------KGKRVLVLVPTRELAEQWAEEL 74 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhccc--------CCCcEEEEeCCHHHHHHHHHHH
Confidence 457789999999999999998 9999999999999999999999887652 2468999999999999999888
Q ss_pred HHhhccCCcceeeccCCCChHHHHHHhcCCc-cEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCCCHHHHHHHH
Q 015712 237 KFISHCARLDSSMENGGVSSKALEDVSNAPI-GMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315 (402)
Q Consensus 237 ~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~-~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~gf~~~i~~il 315 (402)
..+............++.........+..+. +|+++|++.+.+.+.........++++||||+|.+....+...+..++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~ 154 (201)
T smart00487 75 KKLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLL 154 (201)
T ss_pred HHHhccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHH
Confidence 8876554433444445555444444455555 999999999999998877777889999999999987657888888888
Q ss_pred HHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhccccccCC
Q 015712 316 NPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAG 360 (402)
Q Consensus 316 ~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~~~~~~ 360 (402)
..+. ...+++++|||+++.+......++.....+..+
T Consensus 155 ~~~~--------~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~ 191 (201)
T smart00487 155 KLLP--------KNVQLLLLSATPPEEIENLLELFLNDPVFIDVG 191 (201)
T ss_pred HhCC--------ccceEEEEecCCchhHHHHHHHhcCCCEEEeCC
Confidence 8773 378999999999999999988888866555443
No 64
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.87 E-value=3.6e-21 Score=202.36 Aligned_cols=173 Identities=17% Similarity=0.119 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHcCCcEEEEcCCCCChhhH---------hHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHH
Q 015712 166 EIQCVGIPAVLNGKSVVLSSGSGSGRTLA---------YLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMA 236 (402)
Q Consensus 166 ~iQ~~~i~~il~g~dvli~a~TGsGKTla---------~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~ 236 (402)
.+|.++++.++.|+|+|++|+||||||.+ |++|.+..+..-. ....+.+++|++|||+||.|+...+
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~----~~~~~~~ilvt~PrreLa~qi~~~i 242 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID----PNFIERPIVLSLPRVALVRLHSITL 242 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc----cccCCcEEEEECcHHHHHHHHHHHH
Confidence 58999999999999999999999999997 4455555443211 0124678999999999999998888
Q ss_pred HHhhcc---CCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCCCHHHHHH
Q 015712 237 KFISHC---ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISK 313 (402)
Q Consensus 237 ~~l~~~---~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~gf~~~i~~ 313 (402)
.....+ .+..+.+.+||... .+......+.+|+|+|++.. ...+.++++|||||||.+...+ +.+..
T Consensus 243 ~~~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~-------l~~L~~v~~VVIDEaHEr~~~~--DllL~ 312 (675)
T PHA02653 243 LKSLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLT-------LNKLFDYGTVIIDEVHEHDQIG--DIIIA 312 (675)
T ss_pred HHHhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCccc-------ccccccCCEEEccccccCccch--hHHHH
Confidence 665443 35667888999873 22223334679999997631 1247889999999999997665 44555
Q ss_pred HHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhccccccCC
Q 015712 314 ILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAG 360 (402)
Q Consensus 314 il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~~~~~~ 360 (402)
++..+.. ..+|+++||||++.++..+ ..|+.++..+.+.
T Consensus 313 llk~~~~-------~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~ 351 (675)
T PHA02653 313 VARKHID-------KIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIP 351 (675)
T ss_pred HHHHhhh-------hcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeC
Confidence 5544331 2359999999999888776 6899888766543
No 65
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.85 E-value=8.4e-21 Score=198.73 Aligned_cols=189 Identities=13% Similarity=0.179 Sum_probs=147.0
Q ss_pred HHCCCCCCcHHHHHHHHHHHc-CCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHH
Q 015712 157 EKMGLFVPSEIQCVGIPAVLN-GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHM 235 (402)
Q Consensus 157 ~~~g~~~pt~iQ~~~i~~il~-g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~ 235 (402)
..++|..+..+|..++|.+.. +.|+|||||||+|||..|++.|+..+.+............++|||+|+++||..+.+.
T Consensus 104 ~~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~ 183 (1230)
T KOG0952|consen 104 GFFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDK 183 (1230)
T ss_pred hcccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHH
Confidence 446788999999999999885 5699999999999999999999999987433222345688999999999999999887
Q ss_pred HHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCC----CCCCeeEEEEcCCCccccCCCHHHH
Q 015712 236 AKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNV----SCDDIRYVVLDEADTLFDRGFGPEI 311 (402)
Q Consensus 236 ~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~----~l~~l~~lVlDEad~~l~~gf~~~i 311 (402)
+..-....|+.|..++|+....... . ..++|||+||+.. +.+.++.. .++.+++|||||+|. +....++.+
T Consensus 184 ~~kkl~~~gi~v~ELTGD~ql~~te-i--~~tqiiVTTPEKw-DvvTRk~~~d~~l~~~V~LviIDEVHl-Lhd~RGpvl 258 (1230)
T KOG0952|consen 184 FSKKLAPLGISVRELTGDTQLTKTE-I--ADTQIIVTTPEKW-DVVTRKSVGDSALFSLVRLVIIDEVHL-LHDDRGPVL 258 (1230)
T ss_pred HhhhcccccceEEEecCcchhhHHH-H--HhcCEEEecccce-eeeeeeeccchhhhhheeeEEeeeehh-hcCcccchH
Confidence 7665556699999999998765443 2 2489999999985 55544321 357899999999995 456689999
Q ss_pred HHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhc
Q 015712 312 SKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMEC 353 (402)
Q Consensus 312 ~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~ 353 (402)
+.|+.++.+..+ ..-..+++|++|||+|+-.. +..||+-
T Consensus 259 EtiVaRtlr~ve-ssqs~IRivgLSATlPN~eD--vA~fL~v 297 (1230)
T KOG0952|consen 259 ETIVARTLRLVE-SSQSMIRIVGLSATLPNYED--VARFLRV 297 (1230)
T ss_pred HHHHHHHHHHHH-hhhhheEEEEeeccCCCHHH--HHHHhcC
Confidence 999988764332 22357999999999998322 4555554
No 66
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.83 E-value=3.2e-19 Score=175.66 Aligned_cols=213 Identities=16% Similarity=0.179 Sum_probs=158.5
Q ss_pred CCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhh
Q 015712 161 LFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 240 (402)
Q Consensus 161 ~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~ 240 (402)
.-.++.+|......++.+ |+|++.|||-|||++.++-+..++... +.++|+|+||+.|+.|.+..|..+.
T Consensus 13 ~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~---------~~kvlfLAPTKPLV~Qh~~~~~~v~ 82 (542)
T COG1111 13 TIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWF---------GGKVLFLAPTKPLVLQHAEFCRKVT 82 (542)
T ss_pred cccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhc---------CCeEEEecCCchHHHHHHHHHHHHh
Confidence 346788888888777775 999999999999999999888888763 3389999999999999999998887
Q ss_pred ccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCCCHHHHHH-HHHHhh
Q 015712 241 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISK-ILNPLK 319 (402)
Q Consensus 241 ~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~gf~~~i~~-il~~l~ 319 (402)
....-.++.++|..+..++...+.. .+|+|+||+.+.+-+..+.+++.++.+||+||||+.....-...+.. .++.-
T Consensus 83 ~ip~~~i~~ltGev~p~~R~~~w~~-~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~- 160 (542)
T COG1111 83 GIPEDEIAALTGEVRPEEREELWAK-KKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSA- 160 (542)
T ss_pred CCChhheeeecCCCChHHHHHHHhh-CCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhc-
Confidence 6666788999999998887776655 58999999999999999999999999999999999865543333333 33222
Q ss_pred hhhcccCCCCceEEEEeeccCchhHHHHHHHhhccccccC-------CceeeeeeecccceE-EeecccHHHHHHHHHHH
Q 015712 320 DSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNA-------GKVTAMLLEMDQAEV-FDLTESQDALKKKVVEA 391 (402)
Q Consensus 320 ~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~~~~~-------~~~~~~~~~v~q~~~-~~~~e~~~~~~~~l~~~ 391 (402)
.++.++++|||...+.... ...+.|+-+..+ ..+..++-.+.-.++ +...+...+.++.|.++
T Consensus 161 --------k~~~ilgLTASPGs~~ekI-~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~ 231 (542)
T COG1111 161 --------KNPLILGLTASPGSDLEKI-QEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDA 231 (542)
T ss_pred --------cCceEEEEecCCCCCHHHH-HHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHH
Confidence 4789999999998876654 677777644311 223333333332322 33344555666665555
Q ss_pred Hhh
Q 015712 392 MDS 394 (402)
Q Consensus 392 l~~ 394 (402)
|..
T Consensus 232 l~~ 234 (542)
T COG1111 232 LKP 234 (542)
T ss_pred HHH
Confidence 543
No 67
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.83 E-value=2.4e-19 Score=192.71 Aligned_cols=161 Identities=17% Similarity=0.181 Sum_probs=121.9
Q ss_pred HHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHH-HhhccCCcce
Q 015712 169 CVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK-FISHCARLDS 247 (402)
Q Consensus 169 ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~-~l~~~~~~~v 247 (402)
...+.++..+.++|++|+||||||++|.+++++... .++++||+.|||++|.|++..+. .++...+..|
T Consensus 8 ~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~----------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~V 77 (819)
T TIGR01970 8 PALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG----------IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTV 77 (819)
T ss_pred HHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc----------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEE
Confidence 445566777899999999999999999999998652 25689999999999999999874 5555556666
Q ss_pred eeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCC-ccccCCCHHH-HHHHHHHhhhhhccc
Q 015712 248 SMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD-TLFDRGFGPE-ISKILNPLKDSALKS 325 (402)
Q Consensus 248 ~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad-~~l~~gf~~~-i~~il~~l~~~~~~~ 325 (402)
++.+++.. ......+|+|+|||+|++++.+. ..+.++++|||||+| ++++.++.-. +..+...++
T Consensus 78 Gy~vr~~~------~~s~~t~I~v~T~G~Llr~l~~d-~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr------ 144 (819)
T TIGR01970 78 GYRVRGEN------KVSRRTRLEVVTEGILTRMIQDD-PELDGVGALIFDEFHERSLDADLGLALALDVQSSLR------ 144 (819)
T ss_pred EEEEcccc------ccCCCCcEEEECCcHHHHHHhhC-cccccCCEEEEeccchhhhccchHHHHHHHHHHhcC------
Confidence 66555433 23445789999999999999863 578999999999999 5777666443 334444443
Q ss_pred CCCCceEEEEeeccCchhHHHHHHHhhccccc
Q 015712 326 NGQGFQTILVTAAIAEMLGEQLSSLMECLERD 357 (402)
Q Consensus 326 ~~~~~q~i~~SATl~~~v~~~~~~~l~~~~~~ 357 (402)
.+.|+|+||||++... +..|+.++..+
T Consensus 145 --~dlqlIlmSATl~~~~---l~~~l~~~~vI 171 (819)
T TIGR01970 145 --EDLKILAMSATLDGER---LSSLLPDAPVV 171 (819)
T ss_pred --CCceEEEEeCCCCHHH---HHHHcCCCcEE
Confidence 4789999999999653 46677654333
No 68
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.82 E-value=2.4e-19 Score=193.00 Aligned_cols=161 Identities=14% Similarity=0.132 Sum_probs=119.8
Q ss_pred HHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHH-HhhccCCcce
Q 015712 169 CVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK-FISHCARLDS 247 (402)
Q Consensus 169 ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~-~l~~~~~~~v 247 (402)
.+.+.++.+++++|++|+||||||++|.+++++... ...++||++|||++|.|+++.+. .++...+..+
T Consensus 11 ~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~----------~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~V 80 (812)
T PRK11664 11 PELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG----------INGKIIMLEPRRLAARNVAQRLAEQLGEKPGETV 80 (812)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC----------cCCeEEEECChHHHHHHHHHHHHHHhCcccCceE
Confidence 345566778899999999999999999999987532 23489999999999999999874 5566667777
Q ss_pred eeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCc-cccCCC-HHHHHHHHHHhhhhhccc
Q 015712 248 SMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT-LFDRGF-GPEISKILNPLKDSALKS 325 (402)
Q Consensus 248 ~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~-~l~~gf-~~~i~~il~~l~~~~~~~ 325 (402)
++.+++.+. .....+|+|+|||+|++++... ..+.++++|||||+|. +++.++ ...+..++..++
T Consensus 81 Gy~vr~~~~------~~~~t~I~v~T~G~Llr~l~~d-~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr------ 147 (812)
T PRK11664 81 GYRMRAESK------VGPNTRLEVVTEGILTRMIQRD-PELSGVGLVILDEFHERSLQADLALALLLDVQQGLR------ 147 (812)
T ss_pred EEEecCccc------cCCCCcEEEEChhHHHHHHhhC-CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCC------
Confidence 777766542 2334689999999999998863 5689999999999996 455443 222334444443
Q ss_pred CCCCceEEEEeeccCchhHHHHHHHhhccccc
Q 015712 326 NGQGFQTILVTAAIAEMLGEQLSSLMECLERD 357 (402)
Q Consensus 326 ~~~~~q~i~~SATl~~~v~~~~~~~l~~~~~~ 357 (402)
.+.|+|+||||++.. .+..|+.++..+
T Consensus 148 --~~lqlilmSATl~~~---~l~~~~~~~~~I 174 (812)
T PRK11664 148 --DDLKLLIMSATLDND---RLQQLLPDAPVI 174 (812)
T ss_pred --ccceEEEEecCCCHH---HHHHhcCCCCEE
Confidence 478999999999864 245677654333
No 69
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.82 E-value=1.3e-19 Score=187.06 Aligned_cols=151 Identities=13% Similarity=0.126 Sum_probs=115.5
Q ss_pred CCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhh
Q 015712 161 LFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 240 (402)
Q Consensus 161 ~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~ 240 (402)
...|+++|..+++.++.+++.++++|||+|||+++... ...+... ...++|||+||++|+.|+...+..+.
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l-~~~~~~~--------~~~~vLilvpt~eL~~Q~~~~l~~~~ 182 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLL-SRYYLEN--------YEGKVLIIVPTTSLVTQMIDDFVDYR 182 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHH-HHHHHhc--------CCCeEEEEECcHHHHHHHHHHHHHhc
Confidence 35899999999999999999999999999999976442 2222221 24489999999999999999998876
Q ss_pred ccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCCCHHHHHHHHHHhhh
Q 015712 241 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 320 (402)
Q Consensus 241 ~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~~ 320 (402)
......+..+.||.... .+.+|+|+||+++.+... ..+.++++||+||||++.. ..+..++..+++
T Consensus 183 ~~~~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~----~~~~~il~~~~~ 248 (501)
T PHA02558 183 LFPREAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFTG----KSLTSIITKLDN 248 (501)
T ss_pred cccccceeEEecCcccC-------CCCCEEEeeHHHHhhchh---hhccccCEEEEEchhcccc----hhHHHHHHhhhc
Confidence 55445555566665432 346899999999876542 2467899999999999864 346677776642
Q ss_pred hhcccCCCCceEEEEeeccCch
Q 015712 321 SALKSNGQGFQTILVTAAIAEM 342 (402)
Q Consensus 321 ~~~~~~~~~~q~i~~SATl~~~ 342 (402)
..|+++||||+...
T Consensus 249 --------~~~~lGLTATp~~~ 262 (501)
T PHA02558 249 --------CKFKFGLTGSLRDG 262 (501)
T ss_pred --------cceEEEEeccCCCc
Confidence 56899999999764
No 70
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.81 E-value=2.5e-18 Score=170.23 Aligned_cols=163 Identities=13% Similarity=0.135 Sum_probs=115.1
Q ss_pred HHHHHHHHHHcCCc--EEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhccC-
Q 015712 167 IQCVGIPAVLNGKS--VVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA- 243 (402)
Q Consensus 167 iQ~~~i~~il~g~d--vli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~- 243 (402)
+|.++++++..+.+ ++++||||||||++|++|++. .+.+++|++|+++|+.|+++.++.+....
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~-------------~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~ 67 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLH-------------GENDTIALYPTNALIEDQTEAIKEFVDVFK 67 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHH-------------cCCCEEEEeChHHHHHHHHHHHHHHHHhcC
Confidence 59999999999874 789999999999999999884 23468999999999999998887765322
Q ss_pred ---CcceeeccCCCChHH--------------------HHHHhcCCccEEEeCchhhHHHhhcCCC--------CCCCee
Q 015712 244 ---RLDSSMENGGVSSKA--------------------LEDVSNAPIGMLIATPSEVLQHIEDRNV--------SCDDIR 292 (402)
Q Consensus 244 ---~~~v~~~~gg~~~~~--------------------~~~~l~~~~~IlV~TP~~l~~~l~~~~~--------~l~~l~ 292 (402)
+..+..+.|....+. +.......++|+++||+.|..++..... .+.+++
T Consensus 68 ~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~ 147 (357)
T TIGR03158 68 PERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFS 147 (357)
T ss_pred CCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCC
Confidence 455555555422210 0111134678999999988766653211 257899
Q ss_pred EEEEcCCCccccCCC-----HHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHH
Q 015712 293 YVVLDEADTLFDRGF-----GPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSL 350 (402)
Q Consensus 293 ~lVlDEad~~l~~gf-----~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~ 350 (402)
+|||||+|.+-.++. .-....+++... ...+++++|||+++.+...+...
T Consensus 148 ~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~--------~~~~~i~lSAT~~~~~~~~l~~~ 202 (357)
T TIGR03158 148 TVIFDEFHLYDAKQLVGMLFLLAYMQLIRFFE--------CRRKFVFLSATPDPALILRLQNA 202 (357)
T ss_pred EEEEecccccCcccchhhhhhhHHHHHHHhhh--------cCCcEEEEecCCCHHHHHHHHhc
Confidence 999999998754331 112333333332 25799999999999877777664
No 71
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.79 E-value=6e-19 Score=174.80 Aligned_cols=154 Identities=19% Similarity=0.205 Sum_probs=107.8
Q ss_pred cEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChH--
Q 015712 180 SVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK-- 257 (402)
Q Consensus 180 dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~-- 257 (402)
|++++||||||||++|++|++..+... .+.+++|++|+++|+.|+++.+..+... .++.++|+....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~--------~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~ 69 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQ--------KADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKRI 69 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhC--------CCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHHH
Confidence 689999999999999999999876532 4679999999999999999988886321 233333322210
Q ss_pred ----------HHHHHh-c-----CCccEEEeCchhhHHHhhcCC----CCCC--CeeEEEEcCCCccccCCCHHHHHHHH
Q 015712 258 ----------ALEDVS-N-----APIGMLIATPSEVLQHIEDRN----VSCD--DIRYVVLDEADTLFDRGFGPEISKIL 315 (402)
Q Consensus 258 ----------~~~~~l-~-----~~~~IlV~TP~~l~~~l~~~~----~~l~--~l~~lVlDEad~~l~~gf~~~i~~il 315 (402)
...... . ...+|+|+||++++..+..+. +.+. ..++|||||+|.+.+.++.. +..++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l 148 (358)
T TIGR01587 70 KEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVL 148 (358)
T ss_pred hccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHH
Confidence 000001 1 235799999999988876521 1111 23799999999998765433 66666
Q ss_pred HHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhh
Q 015712 316 NPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLME 352 (402)
Q Consensus 316 ~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~ 352 (402)
..+.. .+.|+++||||+|+.+.+++..+..
T Consensus 149 ~~l~~-------~~~~~i~~SATlp~~l~~~~~~~~~ 178 (358)
T TIGR01587 149 EVLKD-------NDVPILLMSATLPKFLKEYAEKIGY 178 (358)
T ss_pred HHHHH-------cCCCEEEEecCchHHHHHHHhcCCC
Confidence 66652 3789999999999777776665543
No 72
>PRK13766 Hef nuclease; Provisional
Probab=99.79 E-value=5.2e-18 Score=184.22 Aligned_cols=175 Identities=16% Similarity=0.164 Sum_probs=133.8
Q ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHh
Q 015712 160 GLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 239 (402)
Q Consensus 160 g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l 239 (402)
+.-.|+++|..++..++.+ |+|+++|||+|||+++++++...+.. .+.++|||+||++|+.|....++.+
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~---------~~~~vLvl~Pt~~L~~Q~~~~~~~~ 81 (773)
T PRK13766 12 NTIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHK---------KGGKVLILAPTKPLVEQHAEFFRKF 81 (773)
T ss_pred CcCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHh---------CCCeEEEEeCcHHHHHHHHHHHHHH
Confidence 3457899999999988887 99999999999999999998887742 4679999999999999999988887
Q ss_pred hccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCCCHHHHHHHHHHhh
Q 015712 240 SHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (402)
Q Consensus 240 ~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~ 319 (402)
....+..+..++|+.+...+...+ .+++|+|+||+.+...+..+.+.+.++++|||||||++........+...+...
T Consensus 82 ~~~~~~~v~~~~g~~~~~~r~~~~-~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~- 159 (773)
T PRK13766 82 LNIPEEKIVVFTGEVSPEKRAELW-EKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHED- 159 (773)
T ss_pred hCCCCceEEEEeCCCCHHHHHHHH-hCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhc-
Confidence 554455788888888766544433 457899999999988888788889999999999999986544333333322221
Q ss_pred hhhcccCCCCceEEEEeeccCchhHHHHHHHhhcc
Q 015712 320 DSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECL 354 (402)
Q Consensus 320 ~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~ 354 (402)
...+++++||||..... ..+..++.++
T Consensus 160 -------~~~~~il~lTaTP~~~~-~~i~~~~~~L 186 (773)
T PRK13766 160 -------AKNPLVLGLTASPGSDE-EKIKEVCENL 186 (773)
T ss_pred -------CCCCEEEEEEcCCCCCH-HHHHHHHHhC
Confidence 13678999999976543 3345555554
No 73
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.79 E-value=1e-18 Score=178.57 Aligned_cols=179 Identities=16% Similarity=0.212 Sum_probs=144.8
Q ss_pred HHHHHHH-CCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHH
Q 015712 152 MIKAVEK-MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESAD 230 (402)
Q Consensus 152 l~~~l~~-~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~ 230 (402)
+...|++ +||..+.+-|.++|..+++|+|+++..|||+||++||.+|.+-. ..-+|||+|..+|..
T Consensus 5 ~~~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~-------------~G~TLVVSPLiSLM~ 71 (590)
T COG0514 5 AQQVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL-------------EGLTLVVSPLISLMK 71 (590)
T ss_pred HHHHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc-------------CCCEEEECchHHHHH
Confidence 3355666 69999999999999999999999999999999999999999862 347999999999998
Q ss_pred HHHHHHHHhhccCCcceeeccCCCChHHHHHHh----cCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCC
Q 015712 231 QGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRG 306 (402)
Q Consensus 231 Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~g 306 (402)
...+.++.. |+.+.++.+..+..++...+ ....++|+-+|++|..--....+.-..+.++||||||++.+||
T Consensus 72 DQV~~l~~~----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWG 147 (590)
T COG0514 72 DQVDQLEAA----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWG 147 (590)
T ss_pred HHHHHHHHc----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcC
Confidence 877766664 68888888887776665433 2348999999999865433333335678999999999999998
Q ss_pred --CHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhc
Q 015712 307 --FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMEC 353 (402)
Q Consensus 307 --f~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~ 353 (402)
|++++..+-...... +++.++++|||.++.+...+...|.-
T Consensus 148 hdFRP~Y~~lg~l~~~~------~~~p~~AlTATA~~~v~~DI~~~L~l 190 (590)
T COG0514 148 HDFRPDYRRLGRLRAGL------PNPPVLALTATATPRVRDDIREQLGL 190 (590)
T ss_pred CccCHhHHHHHHHHhhC------CCCCEEEEeCCCChHHHHHHHHHhcC
Confidence 999988876655432 47899999999999998887766554
No 74
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.78 E-value=1.4e-18 Score=181.69 Aligned_cols=131 Identities=18% Similarity=0.275 Sum_probs=114.5
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHH
Q 015712 159 MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 238 (402)
Q Consensus 159 ~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~ 238 (402)
+|. .|+++|..+.+.+..|+ |+.++||+|||++|++|++-..+. |..|+|++||++||.|.+.++..
T Consensus 53 lg~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~----------G~~V~VvTpt~~LA~qdae~~~~ 119 (745)
T TIGR00963 53 LGM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT----------GKGVHVVTVNDYLAQRDAEWMGQ 119 (745)
T ss_pred hCC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh----------CCCEEEEcCCHHHHHHHHHHHHH
Confidence 577 89999999999998887 999999999999999999654443 55799999999999999999999
Q ss_pred hhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhh-HHHhhcC------CCCCCCeeEEEEcCCCcccc
Q 015712 239 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV-LQHIEDR------NVSCDDIRYVVLDEADTLFD 304 (402)
Q Consensus 239 l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l-~~~l~~~------~~~l~~l~~lVlDEad~~l~ 304 (402)
+...+|+++++++|+.+...+...+ .++|+||||++| .++++.+ .+.++.+.++||||+|.|+-
T Consensus 120 l~~~LGLsv~~i~g~~~~~~r~~~y--~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LI 190 (745)
T TIGR00963 120 VYRFLGLSVGLILSGMSPEERREAY--ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILI 190 (745)
T ss_pred HhccCCCeEEEEeCCCCHHHHHHhc--CCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhH
Confidence 9999999999999998876655544 479999999999 9998876 34678999999999999863
No 75
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.77 E-value=1.8e-17 Score=176.28 Aligned_cols=158 Identities=15% Similarity=0.140 Sum_probs=118.2
Q ss_pred CCcHHHHHHHHHHHcC---CcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHh
Q 015712 163 VPSEIQCVGIPAVLNG---KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 239 (402)
Q Consensus 163 ~pt~iQ~~~i~~il~g---~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l 239 (402)
.+|+.|.+++..+..+ +++++.|+||||||.+|+.++...+. .+.++|||+||++|+.|+++.++..
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~----------~g~~vLvLvPt~~L~~Q~~~~l~~~ 213 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLA----------QGKQALVLVPEIALTPQMLARFRAR 213 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHH----------cCCeEEEEeCcHHHHHHHHHHHHHH
Confidence 4899999999999874 78999999999999999888777664 3678999999999999999888763
Q ss_pred hccCCcceeeccCCCChHHHHH----HhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCC---CHHHHH
Q 015712 240 SHCARLDSSMENGGVSSKALED----VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRG---FGPEIS 312 (402)
Q Consensus 240 ~~~~~~~v~~~~gg~~~~~~~~----~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~g---f~~~i~ 312 (402)
.+..+..++|+.+..++.. .....++|||||++.+. ..+.++++|||||+|...-.. ..-+..
T Consensus 214 ---fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r 283 (679)
T PRK05580 214 ---FGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHAR 283 (679)
T ss_pred ---hCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHH
Confidence 3678889999988765443 23456899999998763 457889999999999764322 111122
Q ss_pred HHHHHhhhhhcccCCCCceEEEEeeccCchhHHH
Q 015712 313 KILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQ 346 (402)
Q Consensus 313 ~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~ 346 (402)
.+...... ..+.|+|++|||.+.+....
T Consensus 284 ~va~~ra~------~~~~~~il~SATps~~s~~~ 311 (679)
T PRK05580 284 DLAVVRAK------LENIPVVLGSATPSLESLAN 311 (679)
T ss_pred HHHHHHhh------ccCCCEEEEcCCCCHHHHHH
Confidence 22211111 14789999999987554433
No 76
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.76 E-value=4.3e-18 Score=180.52 Aligned_cols=131 Identities=16% Similarity=0.273 Sum_probs=111.8
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHH
Q 015712 159 MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 238 (402)
Q Consensus 159 ~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~ 238 (402)
+|. .|+++|..+++++..|+ |+.+.||+|||++|++|++...+ .|..|+|++||++||.|.+..+..
T Consensus 75 ~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al----------~G~~v~VvTpt~~LA~qd~e~~~~ 141 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNAL----------EGKGVHLITVNDYLAKRDAEEMGQ 141 (790)
T ss_pred hCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHH----------cCCCeEEEeCCHHHHHHHHHHHHH
Confidence 587 99999999999999887 99999999999999999986665 378999999999999999999999
Q ss_pred hhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhh-HHHhhcCC------CCCCCeeEEEEcCCCccc
Q 015712 239 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV-LQHIEDRN------VSCDDIRYVVLDEADTLF 303 (402)
Q Consensus 239 l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l-~~~l~~~~------~~l~~l~~lVlDEad~~l 303 (402)
+...+|++++++.|+.+...+.+. ..+++|+||||++| .++|.... ..++.+.++||||||.|+
T Consensus 142 l~~~lGl~v~~i~g~~~~~~~r~~-~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiL 212 (790)
T PRK09200 142 VYEFLGLTVGLNFSDIDDASEKKA-IYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSIL 212 (790)
T ss_pred HHhhcCCeEEEEeCCCCcHHHHHH-hcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccce
Confidence 999999999999999983333332 34589999999999 56555432 356889999999999886
No 77
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.76 E-value=1.1e-17 Score=173.15 Aligned_cols=167 Identities=17% Similarity=0.138 Sum_probs=126.5
Q ss_pred CCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhh
Q 015712 161 LFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 240 (402)
Q Consensus 161 ~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~ 240 (402)
.-.++.+|.+....++ |+|+|+++|||+|||++.+..++.++... ...++||++||+-|+.|....+..++
T Consensus 60 ~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~--------p~~KiVF~aP~~pLv~QQ~a~~~~~~ 130 (746)
T KOG0354|consen 60 NLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWR--------PKGKVVFLAPTRPLVNQQIACFSIYL 130 (746)
T ss_pred cccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcC--------CcceEEEeeCCchHHHHHHHHHhhcc
Confidence 4478999999999988 99999999999999999999999998874 34799999999999999775555544
Q ss_pred ccCCcceeeccCCC-ChHHHHHHhcCCccEEEeCchhhHHHhhcCCCC-CCCeeEEEEcCCCccccCCCHHHHHHHHHHh
Q 015712 241 HCARLDSSMENGGV-SSKALEDVSNAPIGMLIATPSEVLQHIEDRNVS-CDDIRYVVLDEADTLFDRGFGPEISKILNPL 318 (402)
Q Consensus 241 ~~~~~~v~~~~gg~-~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~-l~~l~~lVlDEad~~l~~gf~~~i~~il~~l 318 (402)
.. ..+....||. +..... .+-...+|+|+||..|.+.|..+... ++.+.++||||||+-....-+..|.+-+-.+
T Consensus 131 ~~--~~~T~~l~~~~~~~~r~-~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~ 207 (746)
T KOG0354|consen 131 IP--YSVTGQLGDTVPRSNRG-EIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDL 207 (746)
T ss_pred Cc--ccceeeccCccCCCchh-hhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHh
Confidence 32 4555555553 333333 33345799999999999999876544 5899999999999987666555555333333
Q ss_pred hhhhcccCCCCceEEEEeeccCchhHHH
Q 015712 319 KDSALKSNGQGFQTILVTAAIAEMLGEQ 346 (402)
Q Consensus 319 ~~~~~~~~~~~~q~i~~SATl~~~v~~~ 346 (402)
+. ...|+|++|||++......
T Consensus 208 k~-------~~~qILgLTASpG~~~~~v 228 (746)
T KOG0354|consen 208 KN-------QGNQILGLTASPGSKLEQV 228 (746)
T ss_pred hh-------ccccEEEEecCCCccHHHH
Confidence 32 3459999999999754443
No 78
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.76 E-value=6.4e-18 Score=175.73 Aligned_cols=130 Identities=19% Similarity=0.260 Sum_probs=110.8
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHH
Q 015712 159 MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 238 (402)
Q Consensus 159 ~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~ 238 (402)
+|. .||++|..+++.++.|+ |+.+.||+|||++|++|++.... .|+.++||+||++||.|.+..+..
T Consensus 100 lg~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al----------~G~~v~VvTptreLA~qdae~~~~ 166 (656)
T PRK12898 100 LGQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAAL----------AGLPVHVITVNDYLAERDAELMRP 166 (656)
T ss_pred hCC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhh----------cCCeEEEEcCcHHHHHHHHHHHHH
Confidence 576 89999999999999999 99999999999999999998765 378999999999999999999999
Q ss_pred hhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhh-HHHhhcCC-------------------------CCCCCee
Q 015712 239 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV-LQHIEDRN-------------------------VSCDDIR 292 (402)
Q Consensus 239 l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l-~~~l~~~~-------------------------~~l~~l~ 292 (402)
+....++++++++|+.+.. .+....+++|+|||...| .++|+.+. .....+.
T Consensus 167 l~~~lGlsv~~i~gg~~~~--~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~ 244 (656)
T PRK12898 167 LYEALGLTVGCVVEDQSPD--ERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLH 244 (656)
T ss_pred HHhhcCCEEEEEeCCCCHH--HHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccc
Confidence 9999999999999998754 334456799999999888 55554331 1135688
Q ss_pred EEEEcCCCccc
Q 015712 293 YVVLDEADTLF 303 (402)
Q Consensus 293 ~lVlDEad~~l 303 (402)
+.||||+|.++
T Consensus 245 ~aIvDEvDSiL 255 (656)
T PRK12898 245 FAIVDEADSVL 255 (656)
T ss_pred eeEeeccccee
Confidence 99999999865
No 79
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.75 E-value=1e-17 Score=179.50 Aligned_cols=173 Identities=18% Similarity=0.195 Sum_probs=142.5
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHH
Q 015712 152 MIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQ 231 (402)
Q Consensus 152 l~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Q 231 (402)
+.......|| .+.++|++++-++..|.+|+++||||+|||++.-.++...+.. +.+++|++|.++|.+|
T Consensus 109 ~~~~~~~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~----------~qrviYTsPIKALsNQ 177 (1041)
T COG4581 109 LAPPAREYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD----------GQRVIYTSPIKALSNQ 177 (1041)
T ss_pred cCcHHHhCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc----------CCceEeccchhhhhhh
Confidence 3445567788 8999999999999999999999999999999977776665553 5679999999999999
Q ss_pred HHHHHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCCCHHHH
Q 015712 232 GFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEI 311 (402)
Q Consensus 232 i~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~gf~~~i 311 (402)
.++.+........-.+++++|+.. ++.++.++|.|.+.|..++.++...+..+.+||+||+|.|-|...+...
T Consensus 178 Kyrdl~~~fgdv~~~vGL~TGDv~-------IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VW 250 (1041)
T COG4581 178 KYRDLLAKFGDVADMVGLMTGDVS-------INPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVW 250 (1041)
T ss_pred HHHHHHHHhhhhhhhccceeccee-------eCCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhH
Confidence 998776543211123467777765 3566889999999999999998889999999999999999999999999
Q ss_pred HHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhh
Q 015712 312 SKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLME 352 (402)
Q Consensus 312 ~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~ 352 (402)
+.++-.++ .++|+|+||||+|+..+ +..|+.
T Consensus 251 EE~Ii~lP--------~~v~~v~LSATv~N~~E--F~~Wi~ 281 (1041)
T COG4581 251 EEVIILLP--------DHVRFVFLSATVPNAEE--FAEWIQ 281 (1041)
T ss_pred HHHHHhcC--------CCCcEEEEeCCCCCHHH--HHHHHH
Confidence 99999998 47899999999998543 344544
No 80
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.74 E-value=1.6e-17 Score=176.28 Aligned_cols=130 Identities=18% Similarity=0.269 Sum_probs=113.3
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHH
Q 015712 159 MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 238 (402)
Q Consensus 159 ~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~ 238 (402)
+|. .|+++|...--++..|+ |+.++||+|||++|++|++..++. |..++||+||++||.|.+.++..
T Consensus 79 lg~-~~ydvQliGg~~Lh~G~--Iaem~TGeGKTL~a~Lpa~~~al~----------G~~V~VvTpn~yLA~qd~e~m~~ 145 (896)
T PRK13104 79 LGL-RHFDVQLIGGMVLHEGN--IAEMRTGEGKTLVATLPAYLNAIS----------GRGVHIVTVNDYLAKRDSQWMKP 145 (896)
T ss_pred cCC-CcchHHHhhhhhhccCc--cccccCCCCchHHHHHHHHHHHhc----------CCCEEEEcCCHHHHHHHHHHHHH
Confidence 465 89999998877776665 999999999999999999987763 45699999999999999999999
Q ss_pred hhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhh-HHHhhcC-CCCC-----CCeeEEEEcCCCccc
Q 015712 239 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV-LQHIEDR-NVSC-----DDIRYVVLDEADTLF 303 (402)
Q Consensus 239 l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l-~~~l~~~-~~~l-----~~l~~lVlDEad~~l 303 (402)
+...+|+++++++||.+...+...+ .++|+||||++| .++|+.+ .+++ ..+.++||||||.|+
T Consensus 146 l~~~lGLtv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiL 215 (896)
T PRK13104 146 IYEFLGLTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSIL 215 (896)
T ss_pred HhcccCceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhh
Confidence 9999999999999999887776555 589999999999 9999876 3444 589999999999885
No 81
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.73 E-value=2.4e-17 Score=173.48 Aligned_cols=133 Identities=20% Similarity=0.241 Sum_probs=106.2
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHH
Q 015712 159 MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 238 (402)
Q Consensus 159 ~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~ 238 (402)
+|. .|+++|..+...+..| .|++++||+|||++|++|++...+. +..++||+||++||.|.+.++..
T Consensus 67 lgl-rpydVQlig~l~l~~G--~Iaem~TGeGKTLta~Lpa~l~aL~----------g~~V~VVTpn~yLA~Rdae~m~~ 133 (762)
T TIGR03714 67 LGM-FPYDVQVLGAIVLHQG--NIAEMKTGEGKTLTATMPLYLNALT----------GKGAMLVTTNDYLAKRDAEEMGP 133 (762)
T ss_pred cCC-CccHHHHHHHHHhcCC--ceeEecCCcchHHHHHHHHHHHhhc----------CCceEEeCCCHHHHHHHHHHHHH
Confidence 476 7888888877777666 6999999999999999998776653 55799999999999999999999
Q ss_pred hhccCCcceeeccCCCC---hHHHHHHhcCCccEEEeCchhh-HHHhhc------CCCCCCCeeEEEEcCCCcccc
Q 015712 239 ISHCARLDSSMENGGVS---SKALEDVSNAPIGMLIATPSEV-LQHIED------RNVSCDDIRYVVLDEADTLFD 304 (402)
Q Consensus 239 l~~~~~~~v~~~~gg~~---~~~~~~~l~~~~~IlV~TP~~l-~~~l~~------~~~~l~~l~~lVlDEad~~l~ 304 (402)
+...+|+++.+++++.. .....+....+++|++|||++| .+++.. ....++.+.++||||||.|+-
T Consensus 134 l~~~LGLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILi 209 (762)
T TIGR03714 134 VYEWLGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLL 209 (762)
T ss_pred HHhhcCCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhh
Confidence 99999999988776522 2222334445799999999999 565533 234578899999999999853
No 82
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.72 E-value=1.7e-16 Score=133.67 Aligned_cols=144 Identities=31% Similarity=0.421 Sum_probs=110.8
Q ss_pred CcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHH
Q 015712 179 KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258 (402)
Q Consensus 179 ~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~ 258 (402)
+++++.++||+|||..++..+....... ...+++|++|++.++.|....+...... +..+..+.++.....
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~--------~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 71 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSL--------KGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQ 71 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcc--------cCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhH
Confidence 4689999999999999988887766541 3579999999999999999888877654 677777777777666
Q ss_pred HHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeec
Q 015712 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAA 338 (402)
Q Consensus 259 ~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SAT 338 (402)
.......+.+|+++|++.+...+..........+++||||+|.+....+........... ....+++++|||
T Consensus 72 ~~~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~--------~~~~~~i~~saT 143 (144)
T cd00046 72 QEKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKL--------PKDRQVLLLSAT 143 (144)
T ss_pred HHHHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhC--------CccceEEEEecc
Confidence 655566789999999999998887765566788999999999987655433321111111 147899999999
Q ss_pred c
Q 015712 339 I 339 (402)
Q Consensus 339 l 339 (402)
+
T Consensus 144 p 144 (144)
T cd00046 144 P 144 (144)
T ss_pred C
Confidence 5
No 83
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.69 E-value=3.7e-16 Score=148.64 Aligned_cols=190 Identities=20% Similarity=0.316 Sum_probs=147.2
Q ss_pred ccccccCCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCe
Q 015712 140 VSSFQELGLKAEMIKAVEK-MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPR 218 (402)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~-~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 218 (402)
...=++|+++......|++ +...+++|.|..+|.+.+.|.|+++..|||.||++||.+|++. ....
T Consensus 70 awdkd~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~-------------adg~ 136 (695)
T KOG0353|consen 70 AWDKDDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALC-------------ADGF 136 (695)
T ss_pred ccccCCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHh-------------cCCc
Confidence 3444678888888888877 4778899999999999999999999999999999999999986 4668
Q ss_pred EEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHH----hc--CCccEEEeCchhhHHH---hh--cCCCC
Q 015712 219 AIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDV----SN--APIGMLIATPSEVLQH---IE--DRNVS 287 (402)
Q Consensus 219 ~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~----l~--~~~~IlV~TP~~l~~~---l~--~~~~~ 287 (402)
+||+||...|+....-.++.+ |+...++....+..+-.+. .+ ....++..||+.+... +. ...+.
T Consensus 137 alvi~plislmedqil~lkql----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~ 212 (695)
T KOG0353|consen 137 ALVICPLISLMEDQILQLKQL----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALE 212 (695)
T ss_pred eEeechhHHHHHHHHHHHHHh----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhh
Confidence 999999999998766666665 6677777766665543322 12 2457899999988543 21 13456
Q ss_pred CCCeeEEEEcCCCccccCC--CHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhh
Q 015712 288 CDDIRYVVLDEADTLFDRG--FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLME 352 (402)
Q Consensus 288 l~~l~~lVlDEad~~l~~g--f~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~ 352 (402)
...+.+|.+||+|+...|| |+++... +..|++.. ++..+|+++||.++.|...++.++-
T Consensus 213 ~~~~~~iaidevhccsqwghdfr~dy~~-l~ilkrqf-----~~~~iigltatatn~vl~d~k~il~ 273 (695)
T KOG0353|consen 213 AGFFKLIAIDEVHCCSQWGHDFRPDYKA-LGILKRQF-----KGAPIIGLTATATNHVLDDAKDILC 273 (695)
T ss_pred cceeEEEeecceeehhhhCcccCcchHH-HHHHHHhC-----CCCceeeeehhhhcchhhHHHHHHh
Confidence 7889999999999999998 7777643 34444433 5889999999999998888777653
No 84
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.68 E-value=5.3e-16 Score=170.87 Aligned_cols=157 Identities=13% Similarity=0.121 Sum_probs=101.9
Q ss_pred HHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcC----chHHHHHHHHHHHH-hhccC
Q 015712 169 CVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCT----TEESADQGFHMAKF-ISHCA 243 (402)
Q Consensus 169 ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~P----treLa~Qi~~~~~~-l~~~~ 243 (402)
...+.++..++.+|++|+||||||+ .+|.+..-... +....+++.-| +++||.|+...+.. ++...
T Consensus 80 ~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g~-------g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~V 150 (1294)
T PRK11131 80 QDILEAIRDHQVVIVAGETGSGKTT--QLPKICLELGR-------GVKGLIGHTQPRRLAARTVANRIAEELETELGGCV 150 (1294)
T ss_pred HHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcCC-------CCCCceeeCCCcHHHHHHHHHHHHHHHhhhhccee
Confidence 3445556667778999999999999 47744322210 11123333345 56888888887764 44433
Q ss_pred CcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCC-ccccCCCHHHHHHHHHHhhhhh
Q 015712 244 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD-TLFDRGFGPEISKILNPLKDSA 322 (402)
Q Consensus 244 ~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad-~~l~~gf~~~i~~il~~l~~~~ 322 (402)
|+.+-. .. ....+++|+|+|||+|++.+....+ +.++++||||||| ++++.+|... .+...++.
T Consensus 151 GY~vrf-------~~---~~s~~t~I~v~TpG~LL~~l~~d~~-Ls~~~~IIIDEAHERsLn~DfLLg--~Lk~lL~~-- 215 (1294)
T PRK11131 151 GYKVRF-------ND---QVSDNTMVKLMTDGILLAEIQQDRL-LMQYDTIIIDEAHERSLNIDFILG--YLKELLPR-- 215 (1294)
T ss_pred ceeecC-------cc---ccCCCCCEEEEChHHHHHHHhcCCc-cccCcEEEecCccccccccchHHH--HHHHhhhc--
Confidence 433211 11 2235689999999999999986544 8999999999999 6888887542 12222221
Q ss_pred cccCCCCceEEEEeeccCchhHHHHHHHhhccc
Q 015712 323 LKSNGQGFQTILVTAAIAEMLGEQLSSLMECLE 355 (402)
Q Consensus 323 ~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~ 355 (402)
.++.|+|+||||++. ..+.+.|...|.
T Consensus 216 ----rpdlKvILmSATid~--e~fs~~F~~apv 242 (1294)
T PRK11131 216 ----RPDLKVIITSATIDP--ERFSRHFNNAPI 242 (1294)
T ss_pred ----CCCceEEEeeCCCCH--HHHHHHcCCCCE
Confidence 146899999999974 456655655554
No 85
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.68 E-value=3.7e-16 Score=166.19 Aligned_cols=188 Identities=15% Similarity=0.140 Sum_probs=144.2
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCC-cEEEEcCCCCChhhHhHHHHHHHHHhhcccCCC-CCCCCeEEEEcC
Q 015712 147 GLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGK-SVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPM-KPMHPRAIVLCT 224 (402)
Q Consensus 147 ~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g~-dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~-~~~~~~~Lvl~P 224 (402)
.+|.+-..++ .|...+.++|....++++.+. ++++|||||+|||...++.+++.+..+....+. .....+++|++|
T Consensus 295 elP~Wnq~aF--~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAP 372 (1674)
T KOG0951|consen 295 ELPKWNQPAF--FGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAP 372 (1674)
T ss_pred CCcchhhhhc--ccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEee
Confidence 4566666554 366779999999999998765 899999999999999999999999876543322 334568999999
Q ss_pred chHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCC---CCCeeEEEEcCCCc
Q 015712 225 TEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVS---CDDIRYVVLDEADT 301 (402)
Q Consensus 225 treLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~---l~~l~~lVlDEad~ 301 (402)
..+|++.+...+.......|++|.-++|+.....+.- .+.+|+||||+.. +.+.+..-+ .+-++++|+||+|
T Consensus 373 mKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~qi---eeTqVIV~TPEK~-DiITRk~gdraY~qlvrLlIIDEIH- 447 (1674)
T KOG0951|consen 373 MKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQI---EETQVIVTTPEKW-DIITRKSGDRAYEQLVRLLIIDEIH- 447 (1674)
T ss_pred HHHHHHHHHHHHHhhccccCcEEEEecccccchhhhh---hcceeEEeccchh-hhhhcccCchhHHHHHHHHhhhhhh-
Confidence 9999999888887777778999999999877443221 2468999999985 555544322 3467999999999
Q ss_pred cccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCch
Q 015712 302 LFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEM 342 (402)
Q Consensus 302 ~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~ 342 (402)
|+....++.++.|..+.... ......+++++++|||+|+-
T Consensus 448 LLhDdRGpvLESIVaRt~r~-ses~~e~~RlVGLSATLPNy 487 (1674)
T KOG0951|consen 448 LLHDDRGPVLESIVARTFRR-SESTEEGSRLVGLSATLPNY 487 (1674)
T ss_pred hcccccchHHHHHHHHHHHH-hhhcccCceeeeecccCCch
Confidence 55566788888887766432 23344689999999999983
No 86
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.68 E-value=5.6e-16 Score=149.43 Aligned_cols=184 Identities=21% Similarity=0.261 Sum_probs=137.7
Q ss_pred HHHHHHHH-CCCCCC-cHHHHHHHHHHHcC-CcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchH
Q 015712 151 EMIKAVEK-MGLFVP-SEIQCVGIPAVLNG-KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEE 227 (402)
Q Consensus 151 ~l~~~l~~-~g~~~p-t~iQ~~~i~~il~g-~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~Ptre 227 (402)
.+..+|++ +|+..+ ++.|..|+..+..+ +||.++.|||+||++||.+|.|- .+...||+.|..+
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~-------------~~gITIV~SPLiA 72 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALV-------------HGGITIVISPLIA 72 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHH-------------hCCeEEEehHHHH
Confidence 45667776 588765 89999999998765 59999999999999999999986 3558999999999
Q ss_pred HHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHh------cCCccEEEeCchhhHHHh----hcCCCCCCCeeEEEEc
Q 015712 228 SADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS------NAPIGMLIATPSEVLQHI----EDRNVSCDDIRYVVLD 297 (402)
Q Consensus 228 La~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l------~~~~~IlV~TP~~l~~~l----~~~~~~l~~l~~lVlD 297 (402)
|+....+++..+ .+.+..+.+..+..++.+.+ +....||..||+....-. -+...+-+.+.|+|+|
T Consensus 73 LIkDQiDHL~~L----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVD 148 (641)
T KOG0352|consen 73 LIKDQIDHLKRL----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVD 148 (641)
T ss_pred HHHHHHHHHHhc----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEec
Confidence 998877777765 45666677777766655433 345689999998653221 1223345678999999
Q ss_pred CCCccccCC--CHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHH--HHhhccccc
Q 015712 298 EADTLFDRG--FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLS--SLMECLERD 357 (402)
Q Consensus 298 Ead~~l~~g--f~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~--~~l~~~~~~ 357 (402)
|||+...|| |+++...+=. |... .++...++++||.+..|++.+- .-+++|+-+
T Consensus 149 EAHCVSQWGHDFRPDYL~LG~-LRS~-----~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAi 206 (641)
T KOG0352|consen 149 EAHCVSQWGHDFRPDYLTLGS-LRSV-----CPGVPWVALTATANAKVQEDIAFQLKLRNPVAI 206 (641)
T ss_pred hhhhHhhhccccCcchhhhhh-HHhh-----CCCCceEEeecccChhHHHHHHHHHhhcCcHHh
Confidence 999999998 8888766532 3222 2589999999999999988753 345566544
No 87
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.64 E-value=1e-15 Score=162.24 Aligned_cols=130 Identities=18% Similarity=0.246 Sum_probs=112.6
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHH
Q 015712 159 MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 238 (402)
Q Consensus 159 ~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~ 238 (402)
+|. .|+++|.-+.-++..|+ |+.+.||+|||+++.+|++-..+. |..+-|++||++||.|.+..+..
T Consensus 78 lg~-~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~----------G~~V~IvTpn~yLA~rd~e~~~~ 144 (830)
T PRK12904 78 LGM-RHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALT----------GKGVHVVTVNDYLAKRDAEWMGP 144 (830)
T ss_pred hCC-CCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHc----------CCCEEEEecCHHHHHHHHHHHHH
Confidence 576 89999999988887775 999999999999999999644432 44577999999999999999999
Q ss_pred hhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhh-HHHhhcCC------CCCCCeeEEEEcCCCccc
Q 015712 239 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV-LQHIEDRN------VSCDDIRYVVLDEADTLF 303 (402)
Q Consensus 239 l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l-~~~l~~~~------~~l~~l~~lVlDEad~~l 303 (402)
+...+|+++++++|+.+...+...+. ++|++|||++| .++|+.+. ..++.+.++||||||.|+
T Consensus 145 l~~~LGlsv~~i~~~~~~~er~~~y~--~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiL 214 (830)
T PRK12904 145 LYEFLGLSVGVILSGMSPEERREAYA--ADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSIL 214 (830)
T ss_pred HHhhcCCeEEEEcCCCCHHHHHHhcC--CCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhhe
Confidence 99999999999999999888777654 89999999999 99998654 246789999999999886
No 88
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.63 E-value=1.2e-15 Score=159.03 Aligned_cols=165 Identities=18% Similarity=0.175 Sum_probs=136.1
Q ss_pred HHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHH
Q 015712 157 EKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMA 236 (402)
Q Consensus 157 ~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~ 236 (402)
...+| .+-.+|++||-++..|.+|++.|+|.+|||++.-.++...-. .+.++||.+|-++|.+|-++.+
T Consensus 292 ~~~pF-elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~----------h~TR~iYTSPIKALSNQKfRDF 360 (1248)
T KOG0947|consen 292 LIYPF-ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQK----------HMTRTIYTSPIKALSNQKFRDF 360 (1248)
T ss_pred hhCCC-CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHh----------hccceEecchhhhhccchHHHH
Confidence 34566 788999999999999999999999999999985444432221 4789999999999999999988
Q ss_pred HHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCCCHHHHHHHHH
Q 015712 237 KFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316 (402)
Q Consensus 237 ~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~gf~~~i~~il~ 316 (402)
+..... +++++|+.. ++..+.+||+|.+.|..+|.++.--++++.+||+||+|.+-|...+...+.++-
T Consensus 361 k~tF~D----vgLlTGDvq-------inPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViI 429 (1248)
T KOG0947|consen 361 KETFGD----VGLLTGDVQ-------INPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVII 429 (1248)
T ss_pred HHhccc----cceeeccee-------eCCCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeee
Confidence 775432 347788764 345578999999999999999887789999999999999988888999999999
Q ss_pred HhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhc
Q 015712 317 PLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMEC 353 (402)
Q Consensus 317 ~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~ 353 (402)
+|| .++++|++|||+|+..+ +..|..+
T Consensus 430 MlP--------~HV~~IlLSATVPN~~E--FA~WIGR 456 (1248)
T KOG0947|consen 430 MLP--------RHVNFILLSATVPNTLE--FADWIGR 456 (1248)
T ss_pred ecc--------ccceEEEEeccCCChHH--HHHHhhh
Confidence 998 48999999999998655 3445544
No 89
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.62 E-value=2.2e-15 Score=162.42 Aligned_cols=177 Identities=19% Similarity=0.182 Sum_probs=138.0
Q ss_pred HHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHH
Q 015712 154 KAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGF 233 (402)
Q Consensus 154 ~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~ 233 (402)
.....+|+..+++-|.++|.+++.|+|+++..|||.||++||.+|++- .++..|||.|...|++.+.
T Consensus 255 ~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l-------------~~gitvVISPL~SLm~DQv 321 (941)
T KOG0351|consen 255 LLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALL-------------LGGVTVVISPLISLMQDQV 321 (941)
T ss_pred HHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeeccccc-------------cCCceEEeccHHHHHHHHH
Confidence 344557999999999999999999999999999999999999999874 4568999999999997755
Q ss_pred HHHHHhhccCCcceeeccCCCChHHHHHH---hc-C--CccEEEeCchhhHHHh--hcCCCCCCC---eeEEEEcCCCcc
Q 015712 234 HMAKFISHCARLDSSMENGGVSSKALEDV---SN-A--PIGMLIATPSEVLQHI--EDRNVSCDD---IRYVVLDEADTL 302 (402)
Q Consensus 234 ~~~~~l~~~~~~~v~~~~gg~~~~~~~~~---l~-~--~~~IlV~TP~~l~~~l--~~~~~~l~~---l~~lVlDEad~~ 302 (402)
..+. ..++....+.++....++... +. . .++|+..||+.+...- ......+.. +.++||||||+.
T Consensus 322 ~~L~----~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCV 397 (941)
T KOG0351|consen 322 THLS----KKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCV 397 (941)
T ss_pred Hhhh----hcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHh
Confidence 4442 237888888888887654432 22 2 5899999999885542 122233444 899999999999
Q ss_pred ccCC--CHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhc
Q 015712 303 FDRG--FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMEC 353 (402)
Q Consensus 303 l~~g--f~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~ 353 (402)
..|| |++....+-....+. +.+.+|++|||.+..|+..+-..|+-
T Consensus 398 SqWgHdFRp~Yk~l~~l~~~~------~~vP~iALTATAT~~v~~DIi~~L~l 444 (941)
T KOG0351|consen 398 SQWGHDFRPSYKRLGLLRIRF------PGVPFIALTATATERVREDVIRSLGL 444 (941)
T ss_pred hhhcccccHHHHHHHHHHhhC------CCCCeEEeehhccHHHHHHHHHHhCC
Confidence 9998 888888776544432 46899999999999988876665544
No 90
>PRK09694 helicase Cas3; Provisional
Probab=99.58 E-value=1.8e-14 Score=155.42 Aligned_cols=171 Identities=16% Similarity=0.174 Sum_probs=114.8
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhc
Q 015712 162 FVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 241 (402)
Q Consensus 162 ~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~ 241 (402)
..|+|+|..+......+..+|+.||||+|||.+.++.+...+.. +...+++|.+||+++++|++..+..+..
T Consensus 285 ~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~--------~~~~gi~~aLPT~Atan~m~~Rl~~~~~ 356 (878)
T PRK09694 285 YQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQ--------GLADSIIFALPTQATANAMLSRLEALAS 356 (878)
T ss_pred CCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHh--------CCCCeEEEECcHHHHHHHHHHHHHHHHH
Confidence 48999999886544456679999999999999987765543322 1356899999999999999998875433
Q ss_pred cC--CcceeeccCCCChHHHH---------------------HHhc---C---CccEEEeCchhhHHHhhc-CCCCCCCe
Q 015712 242 CA--RLDSSMENGGVSSKALE---------------------DVSN---A---PIGMLIATPSEVLQHIED-RNVSCDDI 291 (402)
Q Consensus 242 ~~--~~~v~~~~gg~~~~~~~---------------------~~l~---~---~~~IlV~TP~~l~~~l~~-~~~~l~~l 291 (402)
.. ...+.+.+|........ ..+. + -..|+|||...++..+-. +...++.+
T Consensus 357 ~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~ 436 (878)
T PRK09694 357 KLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGF 436 (878)
T ss_pred HhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHH
Confidence 21 34567777765422110 0111 1 158999999988755432 22222222
Q ss_pred ----eEEEEcCCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHH
Q 015712 292 ----RYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLS 348 (402)
Q Consensus 292 ----~~lVlDEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~ 348 (402)
++|||||+|.+ |......+..+++.+.. .+..+|+||||+|....+.+.
T Consensus 437 ~La~svvIiDEVHAy-D~ym~~lL~~~L~~l~~-------~g~~vIllSATLP~~~r~~L~ 489 (878)
T PRK09694 437 GLGRSVLIVDEVHAY-DAYMYGLLEAVLKAQAQ-------AGGSVILLSATLPATLKQKLL 489 (878)
T ss_pred hhccCeEEEechhhC-CHHHHHHHHHHHHHHHh-------cCCcEEEEeCCCCHHHHHHHH
Confidence 58999999976 44344456666665543 367899999999987765433
No 91
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.58 E-value=1.1e-14 Score=148.72 Aligned_cols=178 Identities=16% Similarity=0.205 Sum_probs=141.0
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhcc
Q 015712 163 VPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHC 242 (402)
Q Consensus 163 ~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~ 242 (402)
.+-|+|..+|..+-++.+|++.|.|.+|||.+.-.+|...+.. ..|+||.+|-++|.+|-|+.+..=..
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~----------kQRVIYTSPIKALSNQKYREl~~EF~- 197 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE----------KQRVIYTSPIKALSNQKYRELLEEFK- 197 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh----------cCeEEeeChhhhhcchhHHHHHHHhc-
Confidence 5679999999999999999999999999999988888777764 55899999999999999887754222
Q ss_pred CCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCCCHHHHHHHHHHhhhhh
Q 015712 243 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSA 322 (402)
Q Consensus 243 ~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~~~~ 322 (402)
.|++.+|+... +..+..||.|.+.|..++.++.--++.+.|||+||+|.|-|...+..++.-+-.|+
T Consensus 198 ---DVGLMTGDVTI-------nP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP--- 264 (1041)
T KOG0948|consen 198 ---DVGLMTGDVTI-------NPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLP--- 264 (1041)
T ss_pred ---ccceeecceee-------CCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEecc---
Confidence 46778887654 44577999999999999999888899999999999999999887777777666677
Q ss_pred cccCCCCceEEEEeeccCchhH--HHHHHHhhccccc-----cCCceeeeeeec
Q 015712 323 LKSNGQGFQTILVTAAIAEMLG--EQLSSLMECLERD-----NAGKVTAMLLEM 369 (402)
Q Consensus 323 ~~~~~~~~q~i~~SATl~~~v~--~~~~~~l~~~~~~-----~~~~~~~~~~~v 369 (402)
.+.+.+++|||+|+..+ +-+..+-+-|.++ -..+..|++++.
T Consensus 265 -----~~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ 313 (1041)
T KOG0948|consen 265 -----DNVRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPA 313 (1041)
T ss_pred -----ccceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecC
Confidence 48899999999998644 1122233335544 224556665553
No 92
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.57 E-value=2.9e-14 Score=126.75 Aligned_cols=151 Identities=14% Similarity=0.164 Sum_probs=100.9
Q ss_pred CCcHHHHHHHHHHHc-------CCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHH
Q 015712 163 VPSEIQCVGIPAVLN-------GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHM 235 (402)
Q Consensus 163 ~pt~iQ~~~i~~il~-------g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~ 235 (402)
.++++|.+++..+.. ++.+++.++||||||.+++..+.... . ++||+||+..|+.|....
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~-----------~--~~l~~~p~~~l~~Q~~~~ 69 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELA-----------R--KVLIVAPNISLLEQWYDE 69 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH-----------C--EEEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc-----------c--ceeEecCHHHHHHHHHHH
Confidence 578999999998873 58999999999999998875444432 1 899999999999999988
Q ss_pred HHHhhccCCcc-----------eeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCC-----------CCCCCeeE
Q 015712 236 AKFISHCARLD-----------SSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRN-----------VSCDDIRY 293 (402)
Q Consensus 236 ~~~l~~~~~~~-----------v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~-----------~~l~~l~~ 293 (402)
+..+....... .....................+|+++|...+........ ......++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (184)
T PF04851_consen 70 FDDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDL 149 (184)
T ss_dssp HHHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESE
T ss_pred HHHhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCE
Confidence 86554321100 000111111122223335567899999999988765421 22356789
Q ss_pred EEEcCCCccccCCCHHH-HHHHHHHhhhhhcccCCCCceEEEEeeccC
Q 015712 294 VVLDEADTLFDRGFGPE-ISKILNPLKDSALKSNGQGFQTILVTAAIA 340 (402)
Q Consensus 294 lVlDEad~~l~~gf~~~-i~~il~~l~~~~~~~~~~~~q~i~~SATl~ 340 (402)
||+||||++. ... ...++. . ....+|+||||+.
T Consensus 150 vI~DEaH~~~----~~~~~~~i~~-~---------~~~~~l~lTATp~ 183 (184)
T PF04851_consen 150 VIIDEAHHYP----SDSSYREIIE-F---------KAAFILGLTATPF 183 (184)
T ss_dssp EEEETGGCTH----HHHHHHHHHH-S---------SCCEEEEEESS-S
T ss_pred EEEehhhhcC----CHHHHHHHHc-C---------CCCeEEEEEeCcc
Confidence 9999999874 233 455555 2 3678999999985
No 93
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.57 E-value=2.2e-14 Score=147.77 Aligned_cols=134 Identities=17% Similarity=0.181 Sum_probs=96.3
Q ss_pred EEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHH
Q 015712 182 VLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261 (402)
Q Consensus 182 li~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~ 261 (402)
|+.|+||||||.+|+..+...+. .+.++|||+|+++|+.|+++.++.. .+..+..++|+.+..++..
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~----------~g~~vLvlvP~i~L~~Q~~~~l~~~---f~~~v~vlhs~~~~~er~~ 67 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLA----------LGKSVLVLVPEIALTPQMIQRFKYR---FGSQVAVLHSGLSDSEKLQ 67 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHH----------cCCeEEEEeCcHHHHHHHHHHHHHH---hCCcEEEEECCCCHHHHHH
Confidence 47899999999999766554443 3678999999999999999888764 2567888888887655433
Q ss_pred H----hcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCC---CH---HHHHHHHHHhhhhhcccCCCCce
Q 015712 262 V----SNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRG---FG---PEISKILNPLKDSALKSNGQGFQ 331 (402)
Q Consensus 262 ~----l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~g---f~---~~i~~il~~l~~~~~~~~~~~~q 331 (402)
. ....++|||||+..+. ..+.++++|||||+|...-.+ .. .++..+.... .+.+
T Consensus 68 ~~~~~~~g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~---------~~~~ 131 (505)
T TIGR00595 68 AWRKVKNGEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKK---------FNCP 131 (505)
T ss_pred HHHHHHcCCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHh---------cCCC
Confidence 2 3346799999998763 357889999999999765322 11 2232222222 3789
Q ss_pred EEEEeeccCchhH
Q 015712 332 TILVTAAIAEMLG 344 (402)
Q Consensus 332 ~i~~SATl~~~v~ 344 (402)
+|++|||.+.+..
T Consensus 132 vil~SATPsles~ 144 (505)
T TIGR00595 132 VVLGSATPSLESY 144 (505)
T ss_pred EEEEeCCCCHHHH
Confidence 9999999664433
No 94
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.56 E-value=1.3e-14 Score=153.76 Aligned_cols=131 Identities=15% Similarity=0.209 Sum_probs=110.4
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHH
Q 015712 159 MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 238 (402)
Q Consensus 159 ~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~ 238 (402)
.|. .|+++|...--++..|+ |+.++||.|||++|.+|++...+. |..|.||+|+++||.|...++..
T Consensus 79 lgm-~~ydVQliGgl~L~~G~--IaEm~TGEGKTL~a~lp~~l~al~----------g~~VhIvT~ndyLA~RD~e~m~~ 145 (908)
T PRK13107 79 FEM-RHFDVQLLGGMVLDSNR--IAEMRTGEGKTLTATLPAYLNALT----------GKGVHVITVNDYLARRDAENNRP 145 (908)
T ss_pred hCC-CcCchHHhcchHhcCCc--cccccCCCCchHHHHHHHHHHHhc----------CCCEEEEeCCHHHHHHHHHHHHH
Confidence 466 89999987766666665 999999999999999999887764 55699999999999999999999
Q ss_pred hhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhh-HHHhhcC-CCCC-----CCeeEEEEcCCCcccc
Q 015712 239 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV-LQHIEDR-NVSC-----DDIRYVVLDEADTLFD 304 (402)
Q Consensus 239 l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l-~~~l~~~-~~~l-----~~l~~lVlDEad~~l~ 304 (402)
+..++|++|.++.++.+...... .-.++|++|||++| .++|+.+ .+.. ..+.++||||||.|+-
T Consensus 146 l~~~lGlsv~~i~~~~~~~~r~~--~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLi 216 (908)
T PRK13107 146 LFEFLGLTVGINVAGLGQQEKKA--AYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILI 216 (908)
T ss_pred HHHhcCCeEEEecCCCCHHHHHh--cCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhcc
Confidence 99999999999999988754333 23689999999999 8988876 3333 7789999999998864
No 95
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.56 E-value=1.4e-13 Score=145.15 Aligned_cols=230 Identities=18% Similarity=0.171 Sum_probs=156.5
Q ss_pred HHHHHHHC-CCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHH
Q 015712 152 MIKAVEKM-GLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESAD 230 (402)
Q Consensus 152 l~~~l~~~-g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~ 230 (402)
+-+.+.+. || .|+..|+.+...+..|++.-+.||||.|||..-++..+-... .|.+++||+||..|+.
T Consensus 71 ~~~fF~k~~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~----------kgkr~yii~PT~~Lv~ 139 (1187)
T COG1110 71 FEEFFKKATGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAK----------KGKRVYIIVPTTTLVR 139 (1187)
T ss_pred HHHHHHHhhCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHh----------cCCeEEEEecCHHHHH
Confidence 34445554 66 999999999999999999999999999999755444443322 4789999999999999
Q ss_pred HHHHHHHHhhccCC-cceee-ccCCCChHHHHH----HhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCcccc
Q 015712 231 QGFHMAKFISHCAR-LDSSM-ENGGVSSKALED----VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 304 (402)
Q Consensus 231 Qi~~~~~~l~~~~~-~~v~~-~~gg~~~~~~~~----~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~ 304 (402)
|+++.+..++...+ ..+-+ +++..+..+... ..+.+.||+|+|..-|...+.. +.--+++++++|++|.++-
T Consensus 140 Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~--L~~~kFdfifVDDVDA~Lk 217 (1187)
T COG1110 140 QVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEE--LSKLKFDFIFVDDVDAILK 217 (1187)
T ss_pred HHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHH--hcccCCCEEEEccHHHHHh
Confidence 99999999987665 44333 556655544333 2345799999999887766553 1113688999999999875
Q ss_pred CCCHHHHHHHHHHhh------------------------------------hhhcccCCCCceEEEEeeccCchhHHHHH
Q 015712 305 RGFGPEISKILNPLK------------------------------------DSALKSNGQGFQTILVTAAIAEMLGEQLS 348 (402)
Q Consensus 305 ~gf~~~i~~il~~l~------------------------------------~~~~~~~~~~~q~i~~SATl~~~v~~~~~ 348 (402)
.+ ..++.++..+. ...........++|+.|||..+.-. --
T Consensus 218 as--kNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~--R~ 293 (1187)
T COG1110 218 AS--KNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGS--RL 293 (1187)
T ss_pred cc--ccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCc--hH
Confidence 44 12222221111 0000123456899999999976432 23
Q ss_pred HHhhccccccCCceeeeeeecccceEEeecccHHHHHHHHHHHHhhccc-cCCC
Q 015712 349 SLMECLERDNAGKVTAMLLEMDQAEVFDLTESQDALKKKVVEAMDSLHL-SAPG 401 (402)
Q Consensus 349 ~~l~~~~~~~~~~~~~~~~~v~q~~~~~~~e~~~~~~~~l~~~l~~l~~-~~p~ 401 (402)
.+++.+..+.++.......++...+... ...+....++..|+.+++ |+|.
T Consensus 294 ~LfReLlgFevG~~~~~LRNIvD~y~~~---~~~e~~~elvk~lG~GgLIfV~~ 344 (1187)
T COG1110 294 KLFRELLGFEVGSGGEGLRNIVDIYVES---ESLEKVVELVKKLGDGGLIFVPI 344 (1187)
T ss_pred HHHHHHhCCccCccchhhhheeeeeccC---ccHHHHHHHHHHhCCCeEEEEEc
Confidence 4667777788887777777777766654 334445567777777766 7663
No 96
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.53 E-value=2.9e-13 Score=149.95 Aligned_cols=170 Identities=12% Similarity=0.055 Sum_probs=106.6
Q ss_pred CCCCCCcHHHH---HHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHH
Q 015712 159 MGLFVPSEIQC---VGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHM 235 (402)
Q Consensus 159 ~g~~~pt~iQ~---~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~ 235 (402)
..|....|+.. ..+.++..+..+|++|+||||||.. +|.+..-.. .+....+++.-|.|--|..++..
T Consensus 60 ~~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTTq--lPq~lle~~-------~~~~~~I~~tQPRRlAA~svA~R 130 (1283)
T TIGR01967 60 IRYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTTQ--LPKICLELG-------RGSHGLIGHTQPRRLAARTVAQR 130 (1283)
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHHH--HHHHHHHcC-------CCCCceEecCCccHHHHHHHHHH
Confidence 34555455544 3445555667889999999999984 565432211 11223555566777666665544
Q ss_pred HHHhhccCCcceeeccCCC-ChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCC-ccccCCCHHH-HH
Q 015712 236 AKFISHCARLDSSMENGGV-SSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD-TLFDRGFGPE-IS 312 (402)
Q Consensus 236 ~~~l~~~~~~~v~~~~gg~-~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad-~~l~~gf~~~-i~ 312 (402)
+.. ..+..++..+|.. .... .......|+|+|+|+|+..+.... .+.++++||||||| ++++.+|.-. +.
T Consensus 131 vA~---elg~~lG~~VGY~vR~~~---~~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk 203 (1283)
T TIGR01967 131 IAE---ELGTPLGEKVGYKVRFHD---QVSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLK 203 (1283)
T ss_pred HHH---HhCCCcceEEeeEEcCCc---ccCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHH
Confidence 432 2233333333321 1111 123467899999999999987654 37899999999999 5888876544 44
Q ss_pred HHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhccc
Q 015712 313 KILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLE 355 (402)
Q Consensus 313 ~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~ 355 (402)
.++... ++.|+|+||||++. ..+.+.|...|.
T Consensus 204 ~il~~r---------pdLKlIlmSATld~--~~fa~~F~~apv 235 (1283)
T TIGR01967 204 QLLPRR---------PDLKIIITSATIDP--ERFSRHFNNAPI 235 (1283)
T ss_pred HHHhhC---------CCCeEEEEeCCcCH--HHHHHHhcCCCE
Confidence 454332 37899999999974 555555554554
No 97
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.51 E-value=9e-13 Score=135.32 Aligned_cols=169 Identities=18% Similarity=0.236 Sum_probs=134.4
Q ss_pred CCCHHHH-HHHHHCCCCCCcHHHHHHHHHHHcC------CcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeE
Q 015712 147 GLKAEMI-KAVEKMGLFVPSEIQCVGIPAVLNG------KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRA 219 (402)
Q Consensus 147 ~l~~~l~-~~l~~~g~~~pt~iQ~~~i~~il~g------~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 219 (402)
+....++ +.+..+.| .+|..|+.++.-|... .+-+++|.-|||||++.+++++..+.. |.++
T Consensus 246 ~~~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~----------G~Q~ 314 (677)
T COG1200 246 PANGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA----------GYQA 314 (677)
T ss_pred CccHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc----------CCee
Confidence 3444544 55677899 9999999999998854 367999999999999999999988764 8899
Q ss_pred EEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHH---HhcC-CccEEEeCchhhHHHhhcCCCCCCCeeEEE
Q 015712 220 IVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED---VSNA-PIGMLIATPSEVLQHIEDRNVSCDDIRYVV 295 (402)
Q Consensus 220 Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~---~l~~-~~~IlV~TP~~l~~~l~~~~~~l~~l~~lV 295 (402)
..++||.-||.|.+..+..+....+++|..++|......... .+.+ ..+|||||..-+ +..+.++++.++|
T Consensus 315 ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALi-----Qd~V~F~~LgLVI 389 (677)
T COG1200 315 ALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALI-----QDKVEFHNLGLVI 389 (677)
T ss_pred EEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhh-----hcceeecceeEEE
Confidence 999999999999999999998888999999999877555443 3334 489999997543 4466789999999
Q ss_pred EcCCCccccCCCHHHHHHHHHHhhhhhcccCCC-CceEEEEeeccCchhH
Q 015712 296 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQ-GFQTILVTAAIAEMLG 344 (402)
Q Consensus 296 lDEad~~l~~gf~~~i~~il~~l~~~~~~~~~~-~~q~i~~SATl~~~v~ 344 (402)
+||=|++ +.+=+..++.-. . .+-+++||||.-+...
T Consensus 390 iDEQHRF-----GV~QR~~L~~KG--------~~~Ph~LvMTATPIPRTL 426 (677)
T COG1200 390 IDEQHRF-----GVHQRLALREKG--------EQNPHVLVMTATPIPRTL 426 (677)
T ss_pred Eeccccc-----cHHHHHHHHHhC--------CCCCcEEEEeCCCchHHH
Confidence 9999984 555555554332 3 5789999999866443
No 98
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.49 E-value=1.9e-13 Score=138.95 Aligned_cols=148 Identities=18% Similarity=0.170 Sum_probs=100.9
Q ss_pred CCCcHHHHHHHHHHHc----CCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHH
Q 015712 162 FVPSEIQCVGIPAVLN----GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK 237 (402)
Q Consensus 162 ~~pt~iQ~~~i~~il~----g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~ 237 (402)
..++++|.+++.++.. ++..++++|||+|||+.++-.+.. .+..+||||||++|+.|..+.+.
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~-------------~~~~~Lvlv~~~~L~~Qw~~~~~ 101 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAE-------------LKRSTLVLVPTKELLDQWAEALK 101 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHH-------------hcCCEEEEECcHHHHHHHHHHHH
Confidence 3799999999999988 889999999999999987655543 23349999999999999875554
Q ss_pred HhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCCCHHHHHHHHHH
Q 015712 238 FISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNP 317 (402)
Q Consensus 238 ~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~gf~~~i~~il~~ 317 (402)
...... ..++.+.|+.. .. .. ..|.|+|-..+........+..+...+||+||||++.... ...+...
T Consensus 102 ~~~~~~-~~~g~~~~~~~-~~-----~~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~----~~~~~~~ 169 (442)
T COG1061 102 KFLLLN-DEIGIYGGGEK-EL-----EP-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPS----YRRILEL 169 (442)
T ss_pred HhcCCc-cccceecCcee-cc-----CC-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHH----HHHHHHh
Confidence 432211 12333333322 11 11 3699999988876421122333478999999999985443 3445554
Q ss_pred hhhhhcccCCCCce-EEEEeeccCchh
Q 015712 318 LKDSALKSNGQGFQ-TILVTAAIAEML 343 (402)
Q Consensus 318 l~~~~~~~~~~~~q-~i~~SATl~~~v 343 (402)
+. ... ++++|||++...
T Consensus 170 ~~---------~~~~~LGLTATp~R~D 187 (442)
T COG1061 170 LS---------AAYPRLGLTATPERED 187 (442)
T ss_pred hh---------cccceeeeccCceeec
Confidence 43 223 999999987544
No 99
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.48 E-value=2.3e-13 Score=142.77 Aligned_cols=192 Identities=17% Similarity=0.154 Sum_probs=149.5
Q ss_pred cccCCCCHHHHHHHHHCCCCCCcHHHHHHH--HHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEE
Q 015712 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGI--PAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAI 220 (402)
Q Consensus 143 f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i--~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~L 220 (402)
|...+++....-..+..|+..++.||.+++ +.++.++|+|..+||+.|||++.-+-++..++. .+..++
T Consensus 203 ~a~~~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~---------~rr~~l 273 (1008)
T KOG0950|consen 203 FAKRLPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLC---------RRRNVL 273 (1008)
T ss_pred hhhcCchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHH---------Hhhcee
Confidence 444444444445567789999999999996 678899999999999999999998888887776 355789
Q ss_pred EEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhc--CCCCCCCeeEEEEcC
Q 015712 221 VLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIED--RNVSCDDIRYVVLDE 298 (402)
Q Consensus 221 vl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~--~~~~l~~l~~lVlDE 298 (402)
.+.|-...+..-...+..+....|+.+-.++|....... .+.-+|.|||-++-..++.. ..-.+..+++|||||
T Consensus 274 lilp~vsiv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~----~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdE 349 (1008)
T KOG0950|consen 274 LILPYVSIVQEKISALSPFSIDLGFPVEEYAGRFPPEKR----RKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDE 349 (1008)
T ss_pred EecceeehhHHHHhhhhhhccccCCcchhhcccCCCCCc----ccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEee
Confidence 999999888888888888888889999888877665432 33457999999987666543 122456789999999
Q ss_pred CCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhh
Q 015712 299 ADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLME 352 (402)
Q Consensus 299 ad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~ 352 (402)
.|.+.|.+.+..++.++..+-.... ....|+|+||||+++ ..+++.|+.
T Consensus 350 lhmi~d~~rg~~lE~~l~k~~y~~~---~~~~~iIGMSATi~N--~~lL~~~L~ 398 (1008)
T KOG0950|consen 350 LHMIGDKGRGAILELLLAKILYENL---ETSVQIIGMSATIPN--NSLLQDWLD 398 (1008)
T ss_pred eeeeeccccchHHHHHHHHHHHhcc---ccceeEeeeecccCC--hHHHHHHhh
Confidence 9999999999999999987765432 223789999999998 334555555
No 100
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.48 E-value=2.9e-13 Score=142.72 Aligned_cols=149 Identities=17% Similarity=0.211 Sum_probs=105.8
Q ss_pred CCcHHHHHHHHHHH-cC--CcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHh
Q 015712 163 VPSEIQCVGIPAVL-NG--KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 239 (402)
Q Consensus 163 ~pt~iQ~~~i~~il-~g--~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l 239 (402)
.++|+|.+++..+. .| +..++++|||+|||+..+..+.. + +.++|||||+..|+.|..+.+..+
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~-l------------~k~tLILvps~~Lv~QW~~ef~~~ 321 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACT-V------------KKSCLVLCTSAVSVEQWKQQFKMW 321 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHH-h------------CCCEEEEeCcHHHHHHHHHHHHHh
Confidence 68999999999877 34 37899999999999987654432 2 346999999999999999988887
Q ss_pred hccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcC--------CCCCCCeeEEEEcCCCccccCCCHHHH
Q 015712 240 SHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR--------NVSCDDIRYVVLDEADTLFDRGFGPEI 311 (402)
Q Consensus 240 ~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~--------~~~l~~l~~lVlDEad~~l~~gf~~~i 311 (402)
.......+..++|+.... ......|+|+|...+.....+. .+.-..+.+||+||||++- ....
T Consensus 322 ~~l~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lp----A~~f 392 (732)
T TIGR00603 322 STIDDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVP----AAMF 392 (732)
T ss_pred cCCCCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEcccccc----HHHH
Confidence 544445566666653221 1123679999998765332211 1223467899999999883 3556
Q ss_pred HHHHHHhhhhhcccCCCCceEEEEeeccCch
Q 015712 312 SKILNPLKDSALKSNGQGFQTILVTAAIAEM 342 (402)
Q Consensus 312 ~~il~~l~~~~~~~~~~~~q~i~~SATl~~~ 342 (402)
..++..+. ....+++|||+-.+
T Consensus 393 r~il~~l~---------a~~RLGLTATP~Re 414 (732)
T TIGR00603 393 RRVLTIVQ---------AHCKLGLTATLVRE 414 (732)
T ss_pred HHHHHhcC---------cCcEEEEeecCccc
Confidence 66666664 34689999999753
No 101
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.46 E-value=1.5e-12 Score=144.38 Aligned_cols=162 Identities=17% Similarity=0.140 Sum_probs=107.8
Q ss_pred CCcHHHHHHHHHHH----cC-CcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHH
Q 015712 163 VPSEIQCVGIPAVL----NG-KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK 237 (402)
Q Consensus 163 ~pt~iQ~~~i~~il----~g-~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~ 237 (402)
.++++|..||..+. .| +.+|++++||||||+++ +.++..+.+.. ...++|||+|+++|+.|....+.
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~ta-i~li~~L~~~~-------~~~rVLfLvDR~~L~~Qa~~~F~ 484 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTA-IALMYRLLKAK-------RFRRILFLVDRSALGEQAEDAFK 484 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHH-HHHHHHHHhcC-------ccCeEEEEecHHHHHHHHHHHHH
Confidence 58999999998775 33 57999999999999884 44555555421 35699999999999999999888
Q ss_pred HhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhc-----CCCCCCCeeEEEEcCCCcccc------C-
Q 015712 238 FISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIED-----RNVSCDDIRYVVLDEADTLFD------R- 305 (402)
Q Consensus 238 ~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~-----~~~~l~~l~~lVlDEad~~l~------~- 305 (402)
.+.......+..+++...... ........|+|+|...|...+.. ..+.+..+++||+||||+-.. .
T Consensus 485 ~~~~~~~~~~~~i~~i~~L~~--~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~ 562 (1123)
T PRK11448 485 DTKIEGDQTFASIYDIKGLED--KFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEG 562 (1123)
T ss_pred hcccccccchhhhhchhhhhh--hcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccc
Confidence 764322212212222111111 11233468999999998776532 124567899999999998531 0
Q ss_pred --C------CHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhH
Q 015712 306 --G------FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLG 344 (402)
Q Consensus 306 --g------f~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~ 344 (402)
+ +...+..++..+ +.-.|+||||......
T Consensus 563 ~~~~~~~~~~~~~yr~iL~yF----------dA~~IGLTATP~r~t~ 599 (1123)
T PRK11448 563 ELQFRDQLDYVSKYRRVLDYF----------DAVKIGLTATPALHTT 599 (1123)
T ss_pred hhccchhhhHHHHHHHHHhhc----------CccEEEEecCCccchh
Confidence 1 134455566543 3468999999975443
No 102
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.46 E-value=6.3e-13 Score=145.51 Aligned_cols=146 Identities=17% Similarity=0.251 Sum_probs=103.3
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHH----HHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEc
Q 015712 148 LKAEMIKAVEKMGLFVPSEIQCVGIP----AVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLC 223 (402)
Q Consensus 148 l~~~l~~~l~~~g~~~pt~iQ~~~i~----~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~ 223 (402)
+++.+.+.+...||. +++.|.+.+. ++..|+++++.||||+|||++|++|++..+. .+.++||.+
T Consensus 231 ~~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~----------~~~~vvi~t 299 (850)
T TIGR01407 231 LSSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI----------TEKPVVIST 299 (850)
T ss_pred ccHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc----------CCCeEEEEe
Confidence 344677788889995 8999998666 4557899999999999999999999988664 145899999
Q ss_pred CchHHHHHHHH-HHHHhhccCC--cceeeccCCCCh--------------------------------------------
Q 015712 224 TTEESADQGFH-MAKFISHCAR--LDSSMENGGVSS-------------------------------------------- 256 (402)
Q Consensus 224 PtreLa~Qi~~-~~~~l~~~~~--~~v~~~~gg~~~-------------------------------------------- 256 (402)
||++|+.|+.. .+..+.+..+ ++++++.|+.++
T Consensus 300 ~t~~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~ 379 (850)
T TIGR01407 300 NTKVLQSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLK 379 (850)
T ss_pred CcHHHHHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCC
Confidence 99999999754 5555554433 444444443321
Q ss_pred ---------------------------HHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCcccc
Q 015712 257 ---------------------------KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 304 (402)
Q Consensus 257 ---------------------------~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~ 304 (402)
-...+.....++|||+...-|+..+......+..-+++||||||++.+
T Consensus 380 ~~~~~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d 454 (850)
T TIGR01407 380 GGNKMFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPD 454 (850)
T ss_pred CcchhhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHH
Confidence 000011112458999999888887754433345568999999999864
No 103
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.39 E-value=1.9e-11 Score=132.10 Aligned_cols=187 Identities=16% Similarity=0.121 Sum_probs=147.0
Q ss_pred CCHHHHHHHHH-CCCCCCcHHHHHHHHHHHc----C--CcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEE
Q 015712 148 LKAEMIKAVEK-MGLFVPSEIQCVGIPAVLN----G--KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAI 220 (402)
Q Consensus 148 l~~~l~~~l~~-~g~~~pt~iQ~~~i~~il~----g--~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~L 220 (402)
.+......+.+ ++| .-|+-|..||..+.+ + .|-|+||--|-|||.+.+=+++-.+. .|.+|.
T Consensus 579 ~d~~~q~~F~~~FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~----------~GKQVA 647 (1139)
T COG1197 579 PDTEWQEEFEASFPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVM----------DGKQVA 647 (1139)
T ss_pred CChHHHHHHHhcCCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhc----------CCCeEE
Confidence 33444444444 455 679999999999874 3 48999999999999998888877766 488999
Q ss_pred EEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhc----CCccEEEeCchhhHHHhhcCCCCCCCeeEEEE
Q 015712 221 VLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSN----APIGMLIATPSEVLQHIEDRNVSCDDIRYVVL 296 (402)
Q Consensus 221 vl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~----~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVl 296 (402)
|||||--||+|.++.++......++++..+..-.+..++...+. ...||||||.--| +..+.+.++.+|||
T Consensus 648 vLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL-----~kdv~FkdLGLlII 722 (1139)
T COG1197 648 VLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLL-----SKDVKFKDLGLLII 722 (1139)
T ss_pred EEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhh-----CCCcEEecCCeEEE
Confidence 99999999999999999888888999999888888777765543 4689999996433 34677899999999
Q ss_pred cCCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhccccccCCcee
Q 015712 297 DEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAGKVT 363 (402)
Q Consensus 297 DEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~~~~~~~~~ 363 (402)
||=|++ +..-..-+..|+ .++-++-+|||.-+.+.++.-.=+++...+...+..
T Consensus 723 DEEqRF-----GVk~KEkLK~Lr--------~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~ 776 (1139)
T COG1197 723 DEEQRF-----GVKHKEKLKELR--------ANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPED 776 (1139)
T ss_pred echhhc-----CccHHHHHHHHh--------ccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCC
Confidence 999874 555666666665 478899999999998888877777776666544333
No 104
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.38 E-value=3.3e-12 Score=138.54 Aligned_cols=136 Identities=24% Similarity=0.263 Sum_probs=98.8
Q ss_pred HHHCCCCCCcHHHHHHHHH----HHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHH
Q 015712 156 VEKMGLFVPSEIQCVGIPA----VLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQ 231 (402)
Q Consensus 156 l~~~g~~~pt~iQ~~~i~~----il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Q 231 (402)
+.-.|| .+++-|.+.... +..|..+++.|+||+|||++|++|++... .+.++||++||++|+.|
T Consensus 239 ~~~~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~-----------~~~~vvI~t~T~~Lq~Q 306 (820)
T PRK07246 239 IALLGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS-----------DQRQIIVSVPTKILQDQ 306 (820)
T ss_pred hccCCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc-----------CCCcEEEEeCcHHHHHH
Confidence 334477 789999985544 34578899999999999999999988743 25689999999999999
Q ss_pred H-HHHHHHhhccCCcceeeccCCCChHHH-----------------------------------------------HHH-
Q 015712 232 G-FHMAKFISHCARLDSSMENGGVSSKAL-----------------------------------------------EDV- 262 (402)
Q Consensus 232 i-~~~~~~l~~~~~~~v~~~~gg~~~~~~-----------------------------------------------~~~- 262 (402)
+ .+.+..+.+..++++.++.|+.++--. +..
T Consensus 307 l~~~~i~~l~~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i 386 (820)
T PRK07246 307 IMAEEVKAIQEVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQL 386 (820)
T ss_pred HHHHHHHHHHHhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHh
Confidence 9 467887877777777666655431100 000
Q ss_pred -----------------------hcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCcccc
Q 015712 263 -----------------------SNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 304 (402)
Q Consensus 263 -----------------------l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~ 304 (402)
-...++|||+...-|+..+.... .+...+++||||||++-+
T Consensus 387 ~~~~~~~~~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~-~~p~~~~lIiDEAH~l~~ 450 (820)
T PRK07246 387 KHDGNLSQSSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK-DFARNKVLVFDEAQKLML 450 (820)
T ss_pred hccCCCCCCCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc-CCCCCCEEEEECcchhHH
Confidence 01134799998887777765443 257789999999999753
No 105
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.38 E-value=4.1e-12 Score=132.76 Aligned_cols=61 Identities=16% Similarity=0.272 Sum_probs=52.3
Q ss_pred HHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhh
Q 015712 172 IPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 240 (402)
Q Consensus 172 i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~ 240 (402)
..++..++.+++.|+||+|||++|++|++..+... .+.++||++||++|+.|+.+.+..+.
T Consensus 10 ~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~--------~~~rvlIstpT~~Lq~Ql~~~l~~l~ 70 (636)
T TIGR03117 10 LTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKER--------PDQKIAIAVPTLALMGQLWSELERLT 70 (636)
T ss_pred HHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhc--------cCceEEEECCcHHHHHHHHHHHHHHH
Confidence 34455788999999999999999999999887632 36799999999999999999888776
No 106
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.33 E-value=1e-11 Score=130.22 Aligned_cols=168 Identities=16% Similarity=0.174 Sum_probs=119.1
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhcc
Q 015712 163 VPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHC 242 (402)
Q Consensus 163 ~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~ 242 (402)
.|-.||++.+..+-.+..++|+|||.+|||++- ..+++.+++.. ...-+|+++||.+|+.|+...+......
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfis-fY~iEKVLRes-------D~~VVIyvaPtKaLVnQvsa~VyaRF~~ 582 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFIS-FYAIEKVLRES-------DSDVVIYVAPTKALVNQVSANVYARFDT 582 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceecc-HHHHHHHHhhc-------CCCEEEEecchHHHhhhhhHHHHHhhcc
Confidence 678899999999999999999999999999864 44455555532 4668999999999999977655443322
Q ss_pred C-CcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhc---CCCCCCCeeEEEEcCCCccccCCCHHHHHHHHHHh
Q 015712 243 A-RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIED---RNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318 (402)
Q Consensus 243 ~-~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~---~~~~l~~l~~lVlDEad~~l~~gf~~~i~~il~~l 318 (402)
. -.+...+.|....+-+.. ...|+|+|+-|+.+-.+|-. ......+++|+|+||+|.+-...-+--.+.++...
T Consensus 583 ~t~~rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li 660 (1330)
T KOG0949|consen 583 KTFLRGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI 660 (1330)
T ss_pred CccccchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhc
Confidence 1 122333444433332221 23699999999999888876 34457899999999999875543333333444333
Q ss_pred hhhhcccCCCCceEEEEeeccCchhHHHHHHHhh
Q 015712 319 KDSALKSNGQGFQTILVTAAIAEMLGEQLSSLME 352 (402)
Q Consensus 319 ~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~ 352 (402)
.|.+|++|||+.+. +....|++
T Consensus 661 ----------~CP~L~LSATigN~--~l~qkWln 682 (1330)
T KOG0949|consen 661 ----------PCPFLVLSATIGNP--NLFQKWLN 682 (1330)
T ss_pred ----------CCCeeEEecccCCH--HHHHHHHH
Confidence 68999999999873 44566776
No 107
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.30 E-value=4.1e-11 Score=127.76 Aligned_cols=152 Identities=16% Similarity=0.173 Sum_probs=98.8
Q ss_pred CcHHHHHHHHHHH----c------CCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHH
Q 015712 164 PSEIQCVGIPAVL----N------GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGF 233 (402)
Q Consensus 164 pt~iQ~~~i~~il----~------g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~ 233 (402)
+...|..|+..+. . .+..++..+||||||++.+..+...+ .. ...+++|||+|+.+|..|..
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~-~~-------~~~~~vl~lvdR~~L~~Q~~ 310 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKAL-EL-------LKNPKVFFVVDRRELDYQLM 310 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHH-hh-------cCCCeEEEEECcHHHHHHHH
Confidence 6788999987753 2 24699999999999998755544333 21 24689999999999999999
Q ss_pred HHHHHhhccCCcceeeccCCCChHHHHHHhc-CCccEEEeCchhhHHHhhcC--CCCCCCe-eEEEEcCCCccccCCCHH
Q 015712 234 HMAKFISHCARLDSSMENGGVSSKALEDVSN-APIGMLIATPSEVLQHIEDR--NVSCDDI-RYVVLDEADTLFDRGFGP 309 (402)
Q Consensus 234 ~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~-~~~~IlV~TP~~l~~~l~~~--~~~l~~l-~~lVlDEad~~l~~gf~~ 309 (402)
+.+..+... ...+..+.......+. ....|+|+|.+.|...+... .+....- -+||+||||+.. ++.
T Consensus 311 ~~f~~~~~~------~~~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~---~~~ 381 (667)
T TIGR00348 311 KEFQSLQKD------CAERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQ---YGE 381 (667)
T ss_pred HHHHhhCCC------CCcccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCcccc---chH
Confidence 988887531 1111122333333333 34689999999998654331 1111111 289999999863 222
Q ss_pred HHHHHHHHhhhhhcccCCCCceEEEEeeccCc
Q 015712 310 EISKILNPLKDSALKSNGQGFQTILVTAAIAE 341 (402)
Q Consensus 310 ~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~ 341 (402)
....+...++ +...++||||.-.
T Consensus 382 ~~~~l~~~~p---------~a~~lGfTaTP~~ 404 (667)
T TIGR00348 382 LAKNLKKALK---------NASFFGFTGTPIF 404 (667)
T ss_pred HHHHHHhhCC---------CCcEEEEeCCCcc
Confidence 2222334454 5789999999853
No 108
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.24 E-value=5.2e-11 Score=126.88 Aligned_cols=130 Identities=15% Similarity=0.190 Sum_probs=107.9
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHH
Q 015712 159 MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 238 (402)
Q Consensus 159 ~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~ 238 (402)
+|. .|+++|...--++..| -|+...||+|||++..+|++-..+. |..|.|++||..||.|-+.++..
T Consensus 79 lGm-~~ydVQliGg~~Lh~G--~iaEM~TGEGKTLvA~l~a~l~al~----------G~~VhvvT~ndyLA~RD~e~m~~ 145 (913)
T PRK13103 79 MGM-RHFDVQLIGGMTLHEG--KIAEMRTGEGKTLVGTLAVYLNALS----------GKGVHVVTVNDYLARRDANWMRP 145 (913)
T ss_pred hCC-CcchhHHHhhhHhccC--ccccccCCCCChHHHHHHHHHHHHc----------CCCEEEEeCCHHHHHHHHHHHHH
Confidence 475 8999999876666666 4999999999999999999877664 77899999999999999999999
Q ss_pred hhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhh-HHHhhcCC------CCCCCeeEEEEcCCCccc
Q 015712 239 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV-LQHIEDRN------VSCDDIRYVVLDEADTLF 303 (402)
Q Consensus 239 l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l-~~~l~~~~------~~l~~l~~lVlDEad~~l 303 (402)
+...+|++|+++.++.+.......+. ++|++||..-| .++|+.+. .....+.++||||+|.+|
T Consensus 146 l~~~lGl~v~~i~~~~~~~err~~Y~--~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiL 215 (913)
T PRK13103 146 LYEFLGLSVGIVTPFQPPEEKRAAYA--ADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSIL 215 (913)
T ss_pred HhcccCCEEEEECCCCCHHHHHHHhc--CCEEEEcccccccchhhccceechhhhcccccceeEechhhhee
Confidence 99999999999999888777666665 89999999886 34444321 123789999999999875
No 109
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.18 E-value=1.8e-10 Score=97.65 Aligned_cols=138 Identities=16% Similarity=0.141 Sum_probs=83.1
Q ss_pred cCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCCh
Q 015712 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSS 256 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~ 256 (402)
.|+-.++-..+|+|||--.+.-++..... ++.++|||.|||.++..+.+.++.. ++++..-.-+.
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~---------~~~rvLvL~PTRvva~em~~aL~~~----~~~~~t~~~~~-- 67 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIK---------RRLRVLVLAPTRVVAEEMYEALKGL----PVRFHTNARMR-- 67 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHH---------TT--EEEEESSHHHHHHHHHHTTTS----SEEEESTTSS---
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHH---------ccCeEEEecccHHHHHHHHHHHhcC----CcccCceeeec--
Confidence 35557889999999999877766665555 5789999999999999988877543 23322111110
Q ss_pred HHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEe
Q 015712 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVT 336 (402)
Q Consensus 257 ~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~S 336 (402)
....+.-|=|.|-+.+.+.+.+ ...+.+.++||+||||.+ |.. .-...-.+..+.. .....+|++|
T Consensus 68 -----~~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~-Dp~-sIA~rg~l~~~~~------~g~~~~i~mT 133 (148)
T PF07652_consen 68 -----THFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFT-DPT-SIAARGYLRELAE------SGEAKVIFMT 133 (148)
T ss_dssp --------SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT---SHH-HHHHHHHHHHHHH------TTS-EEEEEE
T ss_pred -----cccCCCcccccccHHHHHHhcC-cccccCccEEEEeccccC-CHH-HHhhheeHHHhhh------ccCeeEEEEe
Confidence 1123345778898888887766 555789999999999965 322 1122223333322 1246899999
Q ss_pred eccCchh
Q 015712 337 AAIAEML 343 (402)
Q Consensus 337 ATl~~~v 343 (402)
||.|-..
T Consensus 134 ATPPG~~ 140 (148)
T PF07652_consen 134 ATPPGSE 140 (148)
T ss_dssp SS-TT--
T ss_pred CCCCCCC
Confidence 9998754
No 110
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.17 E-value=1.9e-10 Score=119.95 Aligned_cols=130 Identities=18% Similarity=0.280 Sum_probs=108.8
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHH
Q 015712 159 MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 238 (402)
Q Consensus 159 ~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~ 238 (402)
+|. .|+++|..+.-.++.|+ |+...||.|||++..+|++...+. |..+.|++||..||.|-+.++..
T Consensus 75 lg~-r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~----------G~~VhvvT~NdyLA~RDae~m~~ 141 (764)
T PRK12326 75 LGL-RPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQ----------GRRVHVITVNDYLARRDAEWMGP 141 (764)
T ss_pred cCC-CcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHc----------CCCeEEEcCCHHHHHHHHHHHHH
Confidence 476 89999999999999885 889999999999999999887764 77899999999999999999999
Q ss_pred hhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhh-HHHhhcC------CCCCCCeeEEEEcCCCccc
Q 015712 239 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV-LQHIEDR------NVSCDDIRYVVLDEADTLF 303 (402)
Q Consensus 239 l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l-~~~l~~~------~~~l~~l~~lVlDEad~~l 303 (402)
+...+|++|+++.++.+.......+ .|||+.||...| .++|+.+ ....+.+.+.||||+|.||
T Consensus 142 ly~~LGLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiL 211 (764)
T PRK12326 142 LYEALGLTVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVL 211 (764)
T ss_pred HHHhcCCEEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhhe
Confidence 9999999999999998877666666 379999999865 2334332 1234668899999999875
No 111
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.16 E-value=3.8e-10 Score=108.61 Aligned_cols=73 Identities=23% Similarity=0.229 Sum_probs=56.7
Q ss_pred CCcHHHHHHH----HHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHH
Q 015712 163 VPSEIQCVGI----PAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 238 (402)
Q Consensus 163 ~pt~iQ~~~i----~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~ 238 (402)
.|+|.|...+ ..+..|.++++.||||+|||++|++|++.++...... ..+.+++|+++|..+..|....++.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~----~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER----IQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc----ccccceeEEeccHHHHHHHHHHHHh
Confidence 4699999954 4556789999999999999999999999887653210 0234899999999998887666655
Q ss_pred h
Q 015712 239 I 239 (402)
Q Consensus 239 l 239 (402)
+
T Consensus 84 ~ 84 (289)
T smart00489 84 L 84 (289)
T ss_pred c
Confidence 4
No 112
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.16 E-value=3.8e-10 Score=108.61 Aligned_cols=73 Identities=23% Similarity=0.229 Sum_probs=56.7
Q ss_pred CCcHHHHHHH----HHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHH
Q 015712 163 VPSEIQCVGI----PAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 238 (402)
Q Consensus 163 ~pt~iQ~~~i----~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~ 238 (402)
.|+|.|...+ ..+..|.++++.||||+|||++|++|++.++...... ..+.+++|+++|..+..|....++.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~----~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER----IQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc----ccccceeEEeccHHHHHHHHHHHHh
Confidence 4699999954 4556789999999999999999999999887653210 0234899999999998887666655
Q ss_pred h
Q 015712 239 I 239 (402)
Q Consensus 239 l 239 (402)
+
T Consensus 84 ~ 84 (289)
T smart00488 84 L 84 (289)
T ss_pred c
Confidence 4
No 113
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.16 E-value=2.2e-10 Score=121.66 Aligned_cols=130 Identities=18% Similarity=0.252 Sum_probs=108.3
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHH
Q 015712 159 MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 238 (402)
Q Consensus 159 ~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~ 238 (402)
.|. .|+++|..+.-++..|+ |....||+|||++..+|++...+. |..|-|++||..||.|-+..+..
T Consensus 77 ~g~-~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~----------G~~v~vvT~neyLA~Rd~e~~~~ 143 (796)
T PRK12906 77 LGL-RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALT----------GKGVHVVTVNEYLSSRDATEMGE 143 (796)
T ss_pred hCC-CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHc----------CCCeEEEeccHHHHHhhHHHHHH
Confidence 476 89999999987887777 999999999999999999887774 77899999999999999999999
Q ss_pred hhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhH-HHhhcCC------CCCCCeeEEEEcCCCccc
Q 015712 239 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVL-QHIEDRN------VSCDDIRYVVLDEADTLF 303 (402)
Q Consensus 239 l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~-~~l~~~~------~~l~~l~~lVlDEad~~l 303 (402)
+...+|++|+++.|+.+.......+ .+||+.||...|- ++|+.+. ...+.+.+.||||+|.|+
T Consensus 144 ~~~~LGl~vg~i~~~~~~~~r~~~y--~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiL 213 (796)
T PRK12906 144 LYRWLGLTVGLNLNSMSPDEKRAAY--NCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSIL 213 (796)
T ss_pred HHHhcCCeEEEeCCCCCHHHHHHHh--cCCCeecCCccccccchhhccccchhhhhccCcceeeeccchhee
Confidence 9999999999999988877665555 4799999998763 4444321 123568899999999875
No 114
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.15 E-value=3.3e-10 Score=125.01 Aligned_cols=65 Identities=22% Similarity=0.324 Sum_probs=55.0
Q ss_pred CCCCCcHHHHHHHHHH----HcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHH
Q 015712 160 GLFVPSEIQCVGIPAV----LNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFH 234 (402)
Q Consensus 160 g~~~pt~iQ~~~i~~i----l~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~ 234 (402)
|| .+++-|.+....+ ..++.+++.|+||+|||++|++|++..... .+.++||-++|+.|..|+..
T Consensus 255 ~~-e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~---------~~~~vvIsT~T~~LQ~Ql~~ 323 (928)
T PRK08074 255 KY-EKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAKK---------KEEPVVISTYTIQLQQQLLE 323 (928)
T ss_pred CC-cCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhhc---------cCCeEEEEcCCHHHHHHHHH
Confidence 66 8999999966554 467889999999999999999999876654 46789999999999999755
No 115
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.14 E-value=6.7e-10 Score=117.38 Aligned_cols=155 Identities=16% Similarity=0.188 Sum_probs=114.9
Q ss_pred CCcHHHHHHHHHHHcC----CcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHH
Q 015712 163 VPSEIQCVGIPAVLNG----KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 238 (402)
Q Consensus 163 ~pt~iQ~~~i~~il~g----~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~ 238 (402)
.+.+-|..++..+... .-.++.+.||||||.+|+-.+-..+. .|.++|||+|-..|-.|+...++.
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~----------~GkqvLvLVPEI~Ltpq~~~rf~~ 267 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLA----------QGKQVLVLVPEIALTPQLLARFKA 267 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHH----------cCCEEEEEeccccchHHHHHHHHH
Confidence 4577899999988765 56899999999999999666655554 478999999999999998887766
Q ss_pred hhccCCcceeeccCCCChHHHHH----HhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccc---cCC---CH
Q 015712 239 ISHCARLDSSMENGGVSSKALED----VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF---DRG---FG 308 (402)
Q Consensus 239 l~~~~~~~v~~~~gg~~~~~~~~----~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l---~~g---f~ 308 (402)
. .+.++..++++.+..+... ..+....|||||-..+ ...+.++.+|||||=|.-. +.+ ..
T Consensus 268 r---Fg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl-------F~Pf~~LGLIIvDEEHD~sYKq~~~prYhA 337 (730)
T COG1198 268 R---FGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL-------FLPFKNLGLIIVDEEHDSSYKQEDGPRYHA 337 (730)
T ss_pred H---hCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh-------cCchhhccEEEEeccccccccCCcCCCcCH
Confidence 4 3578888998888666543 3446789999996555 4567899999999999532 122 23
Q ss_pred HHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHH
Q 015712 309 PEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQ 346 (402)
Q Consensus 309 ~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~ 346 (402)
.++....... .++++|+-|||.+-+....
T Consensus 338 RdvA~~Ra~~---------~~~pvvLgSATPSLES~~~ 366 (730)
T COG1198 338 RDVAVLRAKK---------ENAPVVLGSATPSLESYAN 366 (730)
T ss_pred HHHHHHHHHH---------hCCCEEEecCCCCHHHHHh
Confidence 3333333333 3899999999988544333
No 116
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.14 E-value=3.5e-10 Score=121.88 Aligned_cols=181 Identities=19% Similarity=0.207 Sum_probs=120.5
Q ss_pred CcHHHHHHHHHHHcC---C-cEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHh
Q 015712 164 PSEIQCVGIPAVLNG---K-SVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 239 (402)
Q Consensus 164 pt~iQ~~~i~~il~g---~-dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l 239 (402)
.++.|..++..+..+ . .+++.||||.|||++.+++++..+.... ....+++++.|++.++.++++.+..+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~------~~~~r~i~vlP~~t~ie~~~~r~~~~ 269 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKI------KLKSRVIYVLPFRTIIEDMYRRAKEI 269 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccc------cccceEEEEccHHHHHHHHHHHHHhh
Confidence 488999999887753 3 7899999999999999999988776521 14789999999999999999999876
Q ss_pred hccCCcceeeccCCCChHHHHHH--------------hcCCccEEEeCchhhHHHhhc-CCCC-C--CCeeEEEEcCCCc
Q 015712 240 SHCARLDSSMENGGVSSKALEDV--------------SNAPIGMLIATPSEVLQHIED-RNVS-C--DDIRYVVLDEADT 301 (402)
Q Consensus 240 ~~~~~~~v~~~~gg~~~~~~~~~--------------l~~~~~IlV~TP~~l~~~l~~-~~~~-l--~~l~~lVlDEad~ 301 (402)
....++.....+|.....-.... ......+.++||-.+...... ..+. + -....+||||+|.
T Consensus 270 ~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~ 349 (733)
T COG1203 270 FGLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHL 349 (733)
T ss_pred hcccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHh
Confidence 55444333212333221111000 001234555666554442211 1111 1 1246899999998
Q ss_pred cccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhccccc
Q 015712 302 LFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERD 357 (402)
Q Consensus 302 ~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~~~ 357 (402)
+.+......+..++..+.. .+..+|++|||+|+...+.+...+..-..+
T Consensus 350 ~~~~~~~~~l~~~i~~l~~-------~g~~ill~SATlP~~~~~~l~~~~~~~~~~ 398 (733)
T COG1203 350 YADETMLAALLALLEALAE-------AGVPVLLMSATLPPFLKEKLKKALGKGREV 398 (733)
T ss_pred hcccchHHHHHHHHHHHHh-------CCCCEEEEecCCCHHHHHHHHHHHhcccce
Confidence 8666445555566665553 478999999999999999888877765444
No 117
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.13 E-value=1.3e-09 Score=103.48 Aligned_cols=151 Identities=14% Similarity=0.126 Sum_probs=113.1
Q ss_pred CCcHHHHHHHHHHH----cCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHH
Q 015712 163 VPSEIQCVGIPAVL----NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 238 (402)
Q Consensus 163 ~pt~iQ~~~i~~il----~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~ 238 (402)
.+|+.|+.+-..++ +..++|+.|-||+|||... .+.++..++ .|.++.+.+|....+..++..++.
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMi-f~~i~~al~---------~G~~vciASPRvDVclEl~~Rlk~ 166 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMI-FQGIEQALN---------QGGRVCIASPRVDVCLELYPRLKQ 166 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhh-HHHHHHHHh---------cCCeEEEecCcccchHHHHHHHHH
Confidence 68999998866654 5679999999999999864 566666665 588999999999999999988876
Q ss_pred hhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCCCHHHHHHHHHHh
Q 015712 239 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318 (402)
Q Consensus 239 l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~gf~~~i~~il~~l 318 (402)
- +.+..+.+++|+.....+ ..++|+|...|+.+-+ .++++||||+|.+- ..-...+...++.-
T Consensus 167 a--F~~~~I~~Lyg~S~~~fr-------~plvVaTtHQLlrFk~-------aFD~liIDEVDAFP-~~~d~~L~~Av~~a 229 (441)
T COG4098 167 A--FSNCDIDLLYGDSDSYFR-------APLVVATTHQLLRFKQ-------AFDLLIIDEVDAFP-FSDDQSLQYAVKKA 229 (441)
T ss_pred h--hccCCeeeEecCCchhcc-------ccEEEEehHHHHHHHh-------hccEEEEecccccc-ccCCHHHHHHHHHh
Confidence 4 335778899998875432 5799999998887653 57899999999752 22223333333332
Q ss_pred hhhhcccCCCCceEEEEeeccCchhHHHH
Q 015712 319 KDSALKSNGQGFQTILVTAAIAEMLGEQL 347 (402)
Q Consensus 319 ~~~~~~~~~~~~q~i~~SATl~~~v~~~~ 347 (402)
. ....-+|.+|||.++.++.-+
T Consensus 230 r-------k~~g~~IylTATp~k~l~r~~ 251 (441)
T COG4098 230 R-------KKEGATIYLTATPTKKLERKI 251 (441)
T ss_pred h-------cccCceEEEecCChHHHHHHh
Confidence 2 246789999999998766554
No 118
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.13 E-value=9.6e-10 Score=117.84 Aligned_cols=177 Identities=13% Similarity=0.076 Sum_probs=106.2
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHH-HHhhccCCcc
Q 015712 168 QCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMA-KFISHCARLD 246 (402)
Q Consensus 168 Q~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~-~~l~~~~~~~ 246 (402)
..+.+.++.+..-+|++|+||||||...-.-+++.... .+..+.++-|.|--|..++..+ +.++...|-.
T Consensus 55 ~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~---------~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~ 125 (845)
T COG1643 55 RDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLG---------IAGKIGCTQPRRLAARSVAERVAEELGEKLGET 125 (845)
T ss_pred HHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcc---------cCCeEEecCchHHHHHHHHHHHHHHhCCCcCce
Confidence 33444556666779999999999998755555554331 3456677778775555555544 3343333333
Q ss_pred eeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCCCHHHHHHHHHHhhhhhcccC
Q 015712 247 SSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSN 326 (402)
Q Consensus 247 v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~~~~~~~~ 326 (402)
|++-+-..+ .......|-|+|.|.|+..+++..+ |+.+++|||||||.- .-+...++..++... ...
T Consensus 126 VGY~iRfe~------~~s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHER-----Sl~tDilLgllk~~~-~~r 192 (845)
T COG1643 126 VGYSIRFES------KVSPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHER-----SLNTDILLGLLKDLL-ARR 192 (845)
T ss_pred eeEEEEeec------cCCCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhh-----hHHHHHHHHHHHHHH-hhc
Confidence 433221111 2334567999999999999987655 789999999999963 222333333333211 111
Q ss_pred CCCceEEEEeeccCchhHHHHHHHhhc-cccccCCceeeeeeecccce
Q 015712 327 GQGFQTILVTAAIAEMLGEQLSSLMEC-LERDNAGKVTAMLLEMDQAE 373 (402)
Q Consensus 327 ~~~~q~i~~SATl~~~v~~~~~~~l~~-~~~~~~~~~~~~~~~v~q~~ 373 (402)
..+..+|+||||+.. +. ++.|+.+ |.... ....++|+-.|
T Consensus 193 r~DLKiIimSATld~--~r-fs~~f~~apvi~i----~GR~fPVei~Y 233 (845)
T COG1643 193 RDDLKLIIMSATLDA--ER-FSAYFGNAPVIEI----EGRTYPVEIRY 233 (845)
T ss_pred CCCceEEEEecccCH--HH-HHHHcCCCCEEEe----cCCccceEEEe
Confidence 246899999999984 33 4556654 44332 33344555544
No 119
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.09 E-value=3e-10 Score=118.57 Aligned_cols=162 Identities=19% Similarity=0.230 Sum_probs=116.5
Q ss_pred CCcHHHHHHHHHHH----cCC-cEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHH
Q 015712 163 VPSEIQCVGIPAVL----NGK-SVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK 237 (402)
Q Consensus 163 ~pt~iQ~~~i~~il----~g~-dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~ 237 (402)
.++.+|..||..+. +|+ -+|+++.||+|||... +.++..|.+.. .-.++|+|+-++.|+.|.+..+.
T Consensus 165 ~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTA-iaii~rL~r~~-------~~KRVLFLaDR~~Lv~QA~~af~ 236 (875)
T COG4096 165 GPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTA-IAIIDRLIKSG-------WVKRVLFLADRNALVDQAYGAFE 236 (875)
T ss_pred cchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeH-HHHHHHHHhcc-------hhheeeEEechHHHHHHHHHHHH
Confidence 57889999987754 454 4999999999999874 77888888743 56799999999999999888777
Q ss_pred HhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcC-----CCCCCCeeEEEEcCCCccccCCCHHHHH
Q 015712 238 FISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR-----NVSCDDIRYVVLDEADTLFDRGFGPEIS 312 (402)
Q Consensus 238 ~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~-----~~~l~~l~~lVlDEad~~l~~gf~~~i~ 312 (402)
.+.... -.+..+.+... ...++|.|+|-.++...+... .+....+++|||||||+ |......
T Consensus 237 ~~~P~~-~~~n~i~~~~~--------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHR----gi~~~~~ 303 (875)
T COG4096 237 DFLPFG-TKMNKIEDKKG--------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHR----GIYSEWS 303 (875)
T ss_pred HhCCCc-cceeeeecccC--------CcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhh----hHHhhhH
Confidence 654332 12222222111 113789999999998887643 45677899999999995 4566666
Q ss_pred HHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHh-hccc
Q 015712 313 KILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLM-ECLE 355 (402)
Q Consensus 313 ~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l-~~~~ 355 (402)
.|+.++.. -+++++||+...+...--.|+ ..|.
T Consensus 304 ~I~dYFdA----------~~~gLTATP~~~~d~~T~~~F~g~Pt 337 (875)
T COG4096 304 SILDYFDA----------ATQGLTATPKETIDRSTYGFFNGEPT 337 (875)
T ss_pred HHHHHHHH----------HHHhhccCcccccccccccccCCCcc
Confidence 88888853 344449999886666555566 4443
No 120
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.07 E-value=7.9e-10 Score=117.51 Aligned_cols=130 Identities=19% Similarity=0.218 Sum_probs=104.7
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHH
Q 015712 159 MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 238 (402)
Q Consensus 159 ~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~ 238 (402)
.|+ +|+++|..+.-++.. ..|+...||.|||+++.+|++-..+ .|..|-|++++..||.+-+.++..
T Consensus 73 lG~-r~ydvQlig~l~L~~--G~IaEm~TGEGKTL~a~l~ayl~aL----------~G~~VhVvT~NdyLA~RD~e~m~p 139 (870)
T CHL00122 73 LGL-RHFDVQLIGGLVLND--GKIAEMKTGEGKTLVATLPAYLNAL----------TGKGVHIVTVNDYLAKRDQEWMGQ 139 (870)
T ss_pred hCC-CCCchHhhhhHhhcC--CccccccCCCCchHHHHHHHHHHHh----------cCCceEEEeCCHHHHHHHHHHHHH
Confidence 577 799999987655554 4699999999999999999965444 377899999999999999999999
Q ss_pred hhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhH-HHhhcCC------CCCCCeeEEEEcCCCccc
Q 015712 239 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVL-QHIEDRN------VSCDDIRYVVLDEADTLF 303 (402)
Q Consensus 239 l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~-~~l~~~~------~~l~~l~~lVlDEad~~l 303 (402)
+...+|+.|+++.++.+.......+. ++|+.||...|- ++|+.+. ...+.+.+.||||+|.|+
T Consensus 140 vy~~LGLsvg~i~~~~~~~err~aY~--~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 140 IYRFLGLTVGLIQEGMSSEERKKNYL--KDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred HHHHcCCceeeeCCCCChHHHHHhcC--CCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 99999999999999888877666554 799999997552 3343321 234678999999999875
No 121
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.05 E-value=1.3e-09 Score=115.69 Aligned_cols=130 Identities=18% Similarity=0.235 Sum_probs=106.8
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHH
Q 015712 159 MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 238 (402)
Q Consensus 159 ~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~ 238 (402)
.|. .|+++|..+--++..| -|+.+.||-|||+++.+|++-..+. |..|-||+++..||..-+.++..
T Consensus 82 lG~-r~ydVQliGgl~Lh~G--~IAEM~TGEGKTL~atlpaylnAL~----------GkgVhVVTvNdYLA~RDae~m~~ 148 (939)
T PRK12902 82 LGM-RHFDVQLIGGMVLHEG--QIAEMKTGEGKTLVATLPSYLNALT----------GKGVHVVTVNDYLARRDAEWMGQ 148 (939)
T ss_pred hCC-CcchhHHHhhhhhcCC--ceeeecCCCChhHHHHHHHHHHhhc----------CCCeEEEeCCHHHHHhHHHHHHH
Confidence 476 8999999887777666 4999999999999999999876663 77899999999999999999999
Q ss_pred hhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhh-----HHHhhc--CCCCCCCeeEEEEcCCCccc
Q 015712 239 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV-----LQHIED--RNVSCDDIRYVVLDEADTLF 303 (402)
Q Consensus 239 l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l-----~~~l~~--~~~~l~~l~~lVlDEad~~l 303 (402)
+...+|+.|+++.++.+.......+ .|||++||+..| .+.+.. .....+.+.|.||||+|.+|
T Consensus 149 vy~~LGLtvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 149 VHRFLGLSVGLIQQDMSPEERKKNY--ACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred HHHHhCCeEEEECCCCChHHHHHhc--CCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 9999999999998887776655444 589999999887 444432 12345778999999999875
No 122
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=99.05 E-value=2.2e-09 Score=101.35 Aligned_cols=131 Identities=19% Similarity=0.271 Sum_probs=101.0
Q ss_pred HCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHH
Q 015712 158 KMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK 237 (402)
Q Consensus 158 ~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~ 237 (402)
..|+ .|+++|..++-++..|+ |+...||-|||++..+|++-..+. |..|-|++.+..||..=+..+.
T Consensus 73 ~~g~-~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~----------G~~V~vvT~NdyLA~RD~~~~~ 139 (266)
T PF07517_consen 73 TLGL-RPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQ----------GKGVHVVTSNDYLAKRDAEEMR 139 (266)
T ss_dssp HTS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT----------SS-EEEEESSHHHHHHHHHHHH
T ss_pred HcCC-cccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh----------cCCcEEEeccHHHhhccHHHHH
Confidence 3576 89999999998888777 999999999999998888776663 7789999999999999999999
Q ss_pred HhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhH-HHhhcCC------CCCCCeeEEEEcCCCccc
Q 015712 238 FISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVL-QHIEDRN------VSCDDIRYVVLDEADTLF 303 (402)
Q Consensus 238 ~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~-~~l~~~~------~~l~~l~~lVlDEad~~l 303 (402)
.+...+|+.+++.+++.+.......+. ++|+.||...+. +.|+.+. .....+.++||||||.|+
T Consensus 140 ~~y~~LGlsv~~~~~~~~~~~r~~~Y~--~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 140 PFYEFLGLSVGIITSDMSSEERREAYA--ADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HHHHHTT--EEEEETTTEHHHHHHHHH--SSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HHHHHhhhccccCccccCHHHHHHHHh--CcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 999999999999999888766555554 579999998874 3444321 124688999999999875
No 123
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.03 E-value=4.9e-09 Score=112.36 Aligned_cols=165 Identities=15% Similarity=0.147 Sum_probs=113.7
Q ss_pred CcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHH-Hhhcc
Q 015712 164 PSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK-FISHC 242 (402)
Q Consensus 164 pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~-~l~~~ 242 (402)
.+..+...+.++.+...++|+|.||+|||.-.---+++...... ....+|+.-|.|--|..+++.+. ..+..
T Consensus 174 a~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~-------~~~~IicTQPRRIsAIsvAeRVa~ER~~~ 246 (924)
T KOG0920|consen 174 AYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG-------AACNIICTQPRRISAISVAERVAKERGES 246 (924)
T ss_pred cHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC-------CCCeEEecCCchHHHHHHHHHHHHHhccc
Confidence 46677788888889999999999999999987666777665532 45677888899888888777553 34444
Q ss_pred CCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccc-cCCCHHHHHHHHHHhhhh
Q 015712 243 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF-DRGFGPEISKILNPLKDS 321 (402)
Q Consensus 243 ~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l-~~gf~~~i~~il~~l~~~ 321 (402)
.|-.|++-.+..+. ......+++||.|.|++.+.. .-.+.++.+||+||+|.-- +.+| +..++..+-..
T Consensus 247 ~g~~VGYqvrl~~~------~s~~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i~~Df---lLi~lk~lL~~ 316 (924)
T KOG0920|consen 247 LGEEVGYQVRLESK------RSRETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDF---LLILLKDLLPR 316 (924)
T ss_pred cCCeeeEEEeeecc------cCCceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccCCccc---HHHHHHHHhhh
Confidence 45444444433321 122367999999999999987 4457899999999999642 2223 22333332221
Q ss_pred hcccCCCCceEEEEeeccCchhHHHHHHHhhc
Q 015712 322 ALKSNGQGFQTILVTAAIAEMLGEQLSSLMEC 353 (402)
Q Consensus 322 ~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~ 353 (402)
.++.++|+||||+. .+.++.|+..
T Consensus 317 -----~p~LkvILMSAT~d---ae~fs~YF~~ 340 (924)
T KOG0920|consen 317 -----NPDLKVILMSATLD---AELFSDYFGG 340 (924)
T ss_pred -----CCCceEEEeeeecc---hHHHHHHhCC
Confidence 16899999999998 3445666654
No 124
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.01 E-value=3.4e-09 Score=101.78 Aligned_cols=145 Identities=15% Similarity=0.171 Sum_probs=84.7
Q ss_pred CCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChH
Q 015712 178 GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~ 257 (402)
.+.+|++-.+|+|||+..+. ++..+..... ......+|||||. .+..|....+..+.....+++..+.|+....
T Consensus 25 ~~g~lL~de~GlGKT~~~i~-~~~~l~~~~~----~~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~~~~v~~~~~~~~~~ 98 (299)
T PF00176_consen 25 PRGGLLADEMGLGKTITAIA-LISYLKNEFP----QRGEKKTLIVVPS-SLLSQWKEEIEKWFDPDSLRVIIYDGDSERR 98 (299)
T ss_dssp T-EEEE---TTSSHHHHHHH-HHHHHHHCCT----TSS-S-EEEEE-T-TTHHHHHHHHHHHSGT-TS-EEEESSSCHHH
T ss_pred CCCEEEEECCCCCchhhhhh-hhhhhhhccc----cccccceeEeecc-chhhhhhhhhccccccccccccccccccccc
Confidence 35789999999999987644 4444443211 0112259999999 7888888888887654456777776665122
Q ss_pred HHHHHhcCCccEEEeCchhhH-----HHhhcCCCCCCCeeEEEEcCCCccccCCCHHHHHHHHHHhhhhhcccCCCCceE
Q 015712 258 ALEDVSNAPIGMLIATPSEVL-----QHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQT 332 (402)
Q Consensus 258 ~~~~~l~~~~~IlV~TP~~l~-----~~l~~~~~~l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~ 332 (402)
..........+|+|+|.+.+. .... .+.--+.++||+||+|.+ .+........+..+. ....
T Consensus 99 ~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~--~l~~~~~~~vIvDEaH~~--k~~~s~~~~~l~~l~---------~~~~ 165 (299)
T PF00176_consen 99 RLSKNQLPKYDVVITTYETLRKARKKKDKE--DLKQIKWDRVIVDEAHRL--KNKDSKRYKALRKLR---------ARYR 165 (299)
T ss_dssp HTTSSSCCCSSEEEEEHHHHH--TSTHTTH--HHHTSEEEEEEETTGGGG--TTTTSHHHHHHHCCC---------ECEE
T ss_pred cccccccccceeeecccccccccccccccc--ccccccceeEEEeccccc--ccccccccccccccc---------cceE
Confidence 222222345789999999988 1111 111134899999999998 333344444444453 4678
Q ss_pred EEEeeccCc
Q 015712 333 ILVTAAIAE 341 (402)
Q Consensus 333 i~~SATl~~ 341 (402)
+++|||.-.
T Consensus 166 ~lLSgTP~~ 174 (299)
T PF00176_consen 166 WLLSGTPIQ 174 (299)
T ss_dssp EEE-SS-SS
T ss_pred Eeecccccc
Confidence 999999643
No 125
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.94 E-value=1.5e-08 Score=108.63 Aligned_cols=64 Identities=28% Similarity=0.453 Sum_probs=53.6
Q ss_pred CCCCCcHHHHHHHHHHH---cC------CcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHH
Q 015712 160 GLFVPSEIQCVGIPAVL---NG------KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESAD 230 (402)
Q Consensus 160 g~~~pt~iQ~~~i~~il---~g------~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~ 230 (402)
|| .+++-|.+....+. .+ +.+++.|+||+|||++|++|++..... .+.++||-+.|..|-.
T Consensus 23 ~~-e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~---------~~k~vVIST~T~~LQe 92 (697)
T PRK11747 23 GF-IPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARA---------EKKKLVISTATVALQE 92 (697)
T ss_pred CC-CcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHH---------cCCeEEEEcCCHHHHH
Confidence 67 89999999766554 33 679999999999999999999887665 4678999999999999
Q ss_pred HHH
Q 015712 231 QGF 233 (402)
Q Consensus 231 Qi~ 233 (402)
|+.
T Consensus 93 QL~ 95 (697)
T PRK11747 93 QLV 95 (697)
T ss_pred HHH
Confidence 974
No 126
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=98.93 E-value=2.9e-08 Score=109.06 Aligned_cols=161 Identities=16% Similarity=0.228 Sum_probs=106.2
Q ss_pred CCcHHHHHHHHHHH----cCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHH
Q 015712 163 VPSEIQCVGIPAVL----NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 238 (402)
Q Consensus 163 ~pt~iQ~~~i~~il----~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~ 238 (402)
.+.++|..++..++ .|.+.|++-.+|.|||+.. +.++..+.... +....+|||||. .+..+..+.+..
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQa-IalL~~L~~~~------~~~gp~LIVvP~-SlL~nW~~Ei~k 240 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQT-ISLLGYLHEYR------GITGPHMVVAPK-STLGNWMNEIRR 240 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHH-HHHHHHHHHhc------CCCCCEEEEeCh-HHHHHHHHHHHH
Confidence 68899999988765 5788999999999999864 44455444321 123468999996 555666666666
Q ss_pred hhccCCcceeeccCCCChHHHHH---HhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCCCHHHHHHHH
Q 015712 239 ISHCARLDSSMENGGVSSKALED---VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315 (402)
Q Consensus 239 l~~~~~~~v~~~~gg~~~~~~~~---~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~gf~~~i~~il 315 (402)
++ ..+++..++|......... ......+|+|+|.+.+..... .+.--..++|||||||++ .+....+..++
T Consensus 241 w~--p~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~--~L~k~~W~~VIvDEAHrI--KN~~Sklskal 314 (1033)
T PLN03142 241 FC--PVLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKT--ALKRFSWRYIIIDEAHRI--KNENSLLSKTM 314 (1033)
T ss_pred HC--CCCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHH--HhccCCCCEEEEcCcccc--CCHHHHHHHHH
Confidence 54 2466777777544322211 122457899999988765432 222235789999999998 33344566666
Q ss_pred HHhhhhhcccCCCCceEEEEeeccCc-hhHHH
Q 015712 316 NPLKDSALKSNGQGFQTILVTAAIAE-MLGEQ 346 (402)
Q Consensus 316 ~~l~~~~~~~~~~~~q~i~~SATl~~-~v~~~ 346 (402)
..+. ....+++|+|.-. .+.++
T Consensus 315 r~L~---------a~~RLLLTGTPlqNnl~EL 337 (1033)
T PLN03142 315 RLFS---------TNYRLLITGTPLQNNLHEL 337 (1033)
T ss_pred HHhh---------cCcEEEEecCCCCCCHHHH
Confidence 6664 3456889999754 34443
No 127
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=98.84 E-value=1.1e-07 Score=97.57 Aligned_cols=160 Identities=13% Similarity=0.073 Sum_probs=98.3
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHH-HHhhccCCcc
Q 015712 168 QCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMA-KFISHCARLD 246 (402)
Q Consensus 168 Q~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~-~~l~~~~~~~ 246 (402)
-.+.+..+.+++-+|+.|.||||||.-.- +++..... . ....+-+.-|.|--|..++... ...+...|-.
T Consensus 56 r~~il~~ve~nqvlIviGeTGsGKSTQip----QyL~eaG~----~-~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~ 126 (674)
T KOG0922|consen 56 RDQILYAVEDNQVLIVIGETGSGKSTQIP----QYLAEAGF----A-SSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEE 126 (674)
T ss_pred HHHHHHHHHHCCEEEEEcCCCCCccccHh----HHHHhccc----c-cCCcEEeecCchHHHHHHHHHHHHHhCCCcCce
Confidence 34456667778889999999999998532 22322211 1 2233667778887766665533 4444444444
Q ss_pred eeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCCCHHHHHHHHHHhhhhhcccC
Q 015712 247 SSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSN 326 (402)
Q Consensus 247 v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~~~~~~~~ 326 (402)
|++.+.-.+ .......|.+.|-|.|++.+.... .|....+|||||||.-. -.-+-+--+++.+-..
T Consensus 127 VGY~IRFed------~ts~~TrikymTDG~LLRE~l~Dp-~LskYsvIIlDEAHERs--l~TDiLlGlLKki~~~----- 192 (674)
T KOG0922|consen 127 VGYTIRFED------STSKDTRIKYMTDGMLLREILKDP-LLSKYSVIILDEAHERS--LHTDILLGLLKKILKK----- 192 (674)
T ss_pred eeeEEEecc------cCCCceeEEEecchHHHHHHhcCC-ccccccEEEEechhhhh--hHHHHHHHHHHHHHhc-----
Confidence 443321111 122346799999999998876543 37889999999999531 0222233333333322
Q ss_pred CCCceEEEEeeccCchhHHHHHHHhhc
Q 015712 327 GQGFQTILVTAAIAEMLGEQLSSLMEC 353 (402)
Q Consensus 327 ~~~~q~i~~SATl~~~v~~~~~~~l~~ 353 (402)
..+.++|++|||+. .+.++.|+.+
T Consensus 193 R~~LklIimSATld---a~kfS~yF~~ 216 (674)
T KOG0922|consen 193 RPDLKLIIMSATLD---AEKFSEYFNN 216 (674)
T ss_pred CCCceEEEEeeeec---HHHHHHHhcC
Confidence 24689999999998 3455677766
No 128
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.80 E-value=7.8e-08 Score=95.98 Aligned_cols=210 Identities=13% Similarity=0.156 Sum_probs=141.8
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEEcCC-CCCh--hhHhHHHHHHHHHhhccc---------CC------------CCCCCC
Q 015712 162 FVPSEIQCVGIPAVLNGKSVVLSSGS-GSGR--TLAYLLPLVQMLRRDEAL---------LP------------MKPMHP 217 (402)
Q Consensus 162 ~~pt~iQ~~~i~~il~g~dvli~a~T-GsGK--Tla~~lpil~~l~~~~~~---------~~------------~~~~~~ 217 (402)
..+|+.|.+.+..+.+-+|++..-.| +.|+ +-.|++.+++++++.+.. .. ..-..|
T Consensus 215 ~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tRp 294 (698)
T KOG2340|consen 215 EPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTRP 294 (698)
T ss_pred CcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCCc
Confidence 45799999999999999998765443 3454 557899999988753221 00 122478
Q ss_pred eEEEEcCchHHHHHHHHHHHHhhccCCc-cee------------------------------eccCCCChHHH-------
Q 015712 218 RAIVLCTTEESADQGFHMAKFISHCARL-DSS------------------------------MENGGVSSKAL------- 259 (402)
Q Consensus 218 ~~Lvl~PtreLa~Qi~~~~~~l~~~~~~-~v~------------------------------~~~gg~~~~~~------- 259 (402)
+||||||+|+-|..+.+.+..+....+- +.. ++.|..+..-.
T Consensus 295 kVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ftk 374 (698)
T KOG2340|consen 295 KVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFTK 374 (698)
T ss_pred eEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHHH
Confidence 9999999999999999988777433221 000 11121111000
Q ss_pred --HHHhc--CCccEEEeCchhhHHHhhcCC-----C-CCCCeeEEEEcCCCccccCCCHHHHHHHHHHhhhhhcccCCC-
Q 015712 260 --EDVSN--APIGMLIATPSEVLQHIEDRN-----V-SCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQ- 328 (402)
Q Consensus 260 --~~~l~--~~~~IlV~TP~~l~~~l~~~~-----~-~l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~~~~~~~~~~- 328 (402)
..... ...|||||+|-.|..++.+.+ + .++.+.++|||.||.|+-. ..+.+..|+..|...-.+.++.
T Consensus 375 KtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~Q-NwEhl~~ifdHLn~~P~k~h~~D 453 (698)
T KOG2340|consen 375 KTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQ-NWEHLLHIFDHLNLQPSKQHDVD 453 (698)
T ss_pred HHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHh-hHHHHHHHHHHhhcCcccccCCC
Confidence 00111 246999999999988887321 2 3688999999999988744 4778888888886544333222
Q ss_pred ---------------CceEEEEeeccCchhHHHHHHHhhccccc-------cCCceeeeeeecccc
Q 015712 329 ---------------GFQTILVTAAIAEMLGEQLSSLMECLERD-------NAGKVTAMLLEMDQA 372 (402)
Q Consensus 329 ---------------~~q~i~~SATl~~~v~~~~~~~l~~~~~~-------~~~~~~~~~~~v~q~ 372 (402)
-+|+++||+-..+....++..+++|.... ..+.+.+..+.+.|.
T Consensus 454 fSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qv 519 (698)
T KOG2340|consen 454 FSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQV 519 (698)
T ss_pred hhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhh
Confidence 26999999999999898989999886542 334677777777774
No 129
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=98.76 E-value=5.5e-08 Score=106.45 Aligned_cols=160 Identities=16% Similarity=0.070 Sum_probs=96.6
Q ss_pred CCcHHHHHHHHHHHcC--CcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhh
Q 015712 163 VPSEIQCVGIPAVLNG--KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 240 (402)
Q Consensus 163 ~pt~iQ~~~i~~il~g--~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~ 240 (402)
.|.|+|..+...++.. ..+|+.-.+|.|||.-..+.+...+.. +...++|||||+ .|..|....+..
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~--------g~~~rvLIVvP~-sL~~QW~~El~~-- 220 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLT--------GRAERVLILVPE-TLQHQWLVEMLR-- 220 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHc--------CCCCcEEEEcCH-HHHHHHHHHHHH--
Confidence 4899999998776643 368999999999998876555544443 134589999997 788886666533
Q ss_pred ccCCcceeeccCCCChHHHHH--HhcCCccEEEeCchhhHHHhhc-CCCCCCCeeEEEEcCCCccccC-CCHHHHHHHHH
Q 015712 241 HCARLDSSMENGGVSSKALED--VSNAPIGMLIATPSEVLQHIED-RNVSCDDIRYVVLDEADTLFDR-GFGPEISKILN 316 (402)
Q Consensus 241 ~~~~~~v~~~~gg~~~~~~~~--~l~~~~~IlV~TP~~l~~~l~~-~~~~l~~l~~lVlDEad~~l~~-gf~~~i~~il~ 316 (402)
..++.+.++.++........ ..-...+++|+|.+.+...-.. ..+.-...++|||||||++-.. +........+.
T Consensus 221 -kF~l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~ 299 (956)
T PRK04914 221 -RFNLRFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVE 299 (956)
T ss_pred -HhCCCeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHH
Confidence 22445544443322111000 0001357999998877542111 1122246889999999998521 11111223334
Q ss_pred HhhhhhcccCCCCceEEEEeeccCc
Q 015712 317 PLKDSALKSNGQGFQTILVTAAIAE 341 (402)
Q Consensus 317 ~l~~~~~~~~~~~~q~i~~SATl~~ 341 (402)
.+.. ....++++|||.-.
T Consensus 300 ~La~-------~~~~~LLLTATP~q 317 (956)
T PRK04914 300 QLAE-------VIPGVLLLTATPEQ 317 (956)
T ss_pred HHhh-------ccCCEEEEEcCccc
Confidence 3432 13468999999864
No 130
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.75 E-value=8.6e-08 Score=101.89 Aligned_cols=130 Identities=16% Similarity=0.243 Sum_probs=105.7
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHH
Q 015712 159 MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 238 (402)
Q Consensus 159 ~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~ 238 (402)
+|. +|+++|.-+--++..|+ |....||-|||++..+|++-..+ .|..|-|++....||..=..++..
T Consensus 75 lG~-r~ydVQliGglvLh~G~--IAEMkTGEGKTLvAtLpayLnAL----------~GkgVhVVTvNdYLA~RDae~mg~ 141 (925)
T PRK12903 75 LGK-RPYDVQIIGGIILDLGS--VAEMKTGEGKTITSIAPVYLNAL----------TGKGVIVSTVNEYLAERDAEEMGK 141 (925)
T ss_pred hCC-CcCchHHHHHHHHhcCC--eeeecCCCCccHHHHHHHHHHHh----------cCCceEEEecchhhhhhhHHHHHH
Confidence 476 89999999887777775 89999999999999999876555 366788999999999998999999
Q ss_pred hhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhh-HHHhhcCC------CCCCCeeEEEEcCCCccc
Q 015712 239 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV-LQHIEDRN------VSCDDIRYVVLDEADTLF 303 (402)
Q Consensus 239 l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l-~~~l~~~~------~~l~~l~~lVlDEad~~l 303 (402)
+..++|+.|++...+.........+ .|||..||...| .++|+.+. ...+.+.|.||||+|.+|
T Consensus 142 vy~fLGLsvG~i~~~~~~~~rr~aY--~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSIL 211 (925)
T PRK12903 142 VFNFLGLSVGINKANMDPNLKREAY--ACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSIL 211 (925)
T ss_pred HHHHhCCceeeeCCCCChHHHHHhc--cCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchhee
Confidence 9999999999998887777665555 489999999876 34454321 224678899999999875
No 131
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=98.71 E-value=2.6e-08 Score=107.53 Aligned_cols=152 Identities=20% Similarity=0.251 Sum_probs=115.5
Q ss_pred CCCcHHHHHHHHHHHc-CCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHH-HHh
Q 015712 162 FVPSEIQCVGIPAVLN-GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMA-KFI 239 (402)
Q Consensus 162 ~~pt~iQ~~~i~~il~-g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~-~~l 239 (402)
....++|.++++.+.+ +.++++.||+|||||.+.-++++. .....++++++|..+.+..+++.+ +.+
T Consensus 1142 ~~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~-----------~~~~~~~vyi~p~~~i~~~~~~~w~~~f 1210 (1674)
T KOG0951|consen 1142 QDFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR-----------PDTIGRAVYIAPLEEIADEQYRDWEKKF 1210 (1674)
T ss_pred cccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC-----------CccceEEEEecchHHHHHHHHHHHHHhh
Confidence 3447899999998875 567999999999999998888776 124679999999999997776644 667
Q ss_pred hccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCCCHHH------HHH
Q 015712 240 SHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPE------ISK 313 (402)
Q Consensus 240 ~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~gf~~~------i~~ 313 (402)
....|..++.+.|..+.+-. +....+|+|+||++. ++++ +.+.+++.|.||+|.+-+. ++.- ++.
T Consensus 1211 ~~~~G~~~~~l~ge~s~~lk---l~~~~~vii~tpe~~-d~lq----~iQ~v~l~i~d~lh~igg~-~g~v~evi~S~r~ 1281 (1674)
T KOG0951|consen 1211 SKLLGLRIVKLTGETSLDLK---LLQKGQVIISTPEQW-DLLQ----SIQQVDLFIVDELHLIGGV-YGAVYEVICSMRY 1281 (1674)
T ss_pred ccccCceEEecCCccccchH---HhhhcceEEechhHH-HHHh----hhhhcceEeeehhhhhccc-CCceEEEEeeHHH
Confidence 77788888888888776543 333468999999986 4443 5788999999999966422 2322 444
Q ss_pred HHHHhhhhhcccCCCCceEEEEeeccCc
Q 015712 314 ILNPLKDSALKSNGQGFQTILVTAAIAE 341 (402)
Q Consensus 314 il~~l~~~~~~~~~~~~q~i~~SATl~~ 341 (402)
|...+- .+++++.+|..+.+
T Consensus 1282 ia~q~~--------k~ir~v~ls~~lan 1301 (1674)
T KOG0951|consen 1282 IASQLE--------KKIRVVALSSSLAN 1301 (1674)
T ss_pred HHHHHH--------hheeEEEeehhhcc
Confidence 445444 47899999998876
No 132
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.66 E-value=1.5e-07 Score=100.84 Aligned_cols=71 Identities=27% Similarity=0.361 Sum_probs=58.2
Q ss_pred HHCCCCCCcHHHHHHHHHHH----cCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHH
Q 015712 157 EKMGLFVPSEIQCVGIPAVL----NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQG 232 (402)
Q Consensus 157 ~~~g~~~pt~iQ~~~i~~il----~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi 232 (402)
..+....|++.|.+.+..+. .|+.+++.||||+|||++|++|++..... .+..++|.++|+.|-.|+
T Consensus 9 ~~~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~---------~~~~viist~t~~lq~q~ 79 (654)
T COG1199 9 VAFPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYARE---------EGKKVIISTRTKALQEQL 79 (654)
T ss_pred hhCCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHH---------cCCcEEEECCCHHHHHHH
Confidence 34445599999999986543 45669999999999999999999998876 457899999999999997
Q ss_pred HHHH
Q 015712 233 FHMA 236 (402)
Q Consensus 233 ~~~~ 236 (402)
.+..
T Consensus 80 ~~~~ 83 (654)
T COG1199 80 LEED 83 (654)
T ss_pred HHhh
Confidence 6544
No 133
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=98.62 E-value=2.6e-07 Score=100.12 Aligned_cols=171 Identities=18% Similarity=0.117 Sum_probs=98.7
Q ss_pred CCcHHHHHHHHHHHc--------CCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHH
Q 015712 163 VPSEIQCVGIPAVLN--------GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFH 234 (402)
Q Consensus 163 ~pt~iQ~~~i~~il~--------g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~ 234 (402)
.-+.||-.|+..+.. |-=+|-.|.||+|||++=+=- +..+.. ...|.|..|-.-.|.|-.|.-.
T Consensus 408 ~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARI-myaLsd-------~~~g~RfsiALGLRTLTLQTGd 479 (1110)
T TIGR02562 408 PRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARA-MYALRD-------DKQGARFAIALGLRSLTLQTGH 479 (1110)
T ss_pred CCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHH-HHHhCC-------CCCCceEEEEccccceeccchH
Confidence 346799999988653 233788899999999984322 222222 1245666666666666666554
Q ss_pred HHHHhhccCCcceeeccCCCCh-------------------------------------------HHHHHHhcC------
Q 015712 235 MAKFISHCARLDSSMENGGVSS-------------------------------------------KALEDVSNA------ 265 (402)
Q Consensus 235 ~~~~l~~~~~~~v~~~~gg~~~-------------------------------------------~~~~~~l~~------ 265 (402)
.++.-....+-..++++|+... ......+..
T Consensus 480 a~r~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~r 559 (1110)
T TIGR02562 480 ALKTRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKT 559 (1110)
T ss_pred HHHHhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhh
Confidence 4443322212222222222211 111111111
Q ss_pred --CccEEEeCchhhHHHhhc---CCCCCC----CeeEEEEcCCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEe
Q 015712 266 --PIGMLIATPSEVLQHIED---RNVSCD----DIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVT 336 (402)
Q Consensus 266 --~~~IlV~TP~~l~~~l~~---~~~~l~----~l~~lVlDEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~S 336 (402)
...|+|||+..++..... +...+. .=+.|||||+|.+ |......+..++..+.. -+..++++|
T Consensus 560 ll~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaY-D~~~~~~L~rlL~w~~~-------lG~~VlLmS 631 (1110)
T TIGR02562 560 LLAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDY-EPEDLPALLRLVQLAGL-------LGSRVLLSS 631 (1110)
T ss_pred hhcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccC-CHHHHHHHHHHHHHHHH-------cCCCEEEEe
Confidence 246999999999888632 111111 1267999999976 33334445555554332 378999999
Q ss_pred eccCchhHHHHHH
Q 015712 337 AAIAEMLGEQLSS 349 (402)
Q Consensus 337 ATl~~~v~~~~~~ 349 (402)
||||+.+...+..
T Consensus 632 ATLP~~l~~~L~~ 644 (1110)
T TIGR02562 632 ATLPPALVKTLFR 644 (1110)
T ss_pred CCCCHHHHHHHHH
Confidence 9999987665443
No 134
>PRK14873 primosome assembly protein PriA; Provisional
Probab=98.60 E-value=3.3e-07 Score=97.29 Aligned_cols=137 Identities=13% Similarity=0.087 Sum_probs=94.8
Q ss_pred cCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHH---
Q 015712 185 SGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED--- 261 (402)
Q Consensus 185 a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~--- 261 (402)
+-+|||||.+|+-.+-..+. .|.++|||+|...|+.|+...++.... +..+..++++.+..++.+
T Consensus 167 ~~~GSGKTevyl~~i~~~l~----------~Gk~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w~ 234 (665)
T PRK14873 167 ALPGEDWARRLAAAAAATLR----------AGRGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRWL 234 (665)
T ss_pred cCCCCcHHHHHHHHHHHHHH----------cCCeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHHH
Confidence 33699999999766655554 377899999999999999888876432 256888888888665443
Q ss_pred -HhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccc---cCCCHHHHHHHHHHhhhhhcccCCCCceEEEEee
Q 015712 262 -VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF---DRGFGPEISKILNPLKDSALKSNGQGFQTILVTA 337 (402)
Q Consensus 262 -~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l---~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SA 337 (402)
.....+.|||||-..+ ...+.++.+|||||=|.-. +.+..-+...+.-..... .++.+|+.||
T Consensus 235 ~~~~G~~~IViGtRSAv-------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~------~~~~lvLgSa 301 (665)
T PRK14873 235 AVLRGQARVVVGTRSAV-------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQ------HGCALLIGGH 301 (665)
T ss_pred HHhCCCCcEEEEcceeE-------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHH------cCCcEEEECC
Confidence 3344589999997665 4567899999999988432 112222333333222221 4889999999
Q ss_pred ccCchhHHH
Q 015712 338 AIAEMLGEQ 346 (402)
Q Consensus 338 Tl~~~v~~~ 346 (402)
|.+-+....
T Consensus 302 TPSles~~~ 310 (665)
T PRK14873 302 ARTAEAQAL 310 (665)
T ss_pred CCCHHHHHH
Confidence 998655433
No 135
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=9.9e-07 Score=91.94 Aligned_cols=155 Identities=15% Similarity=0.120 Sum_probs=89.1
Q ss_pred HHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHH-HHhhccCCcceeec
Q 015712 172 IPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMA-KFISHCARLDSSME 250 (402)
Q Consensus 172 i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~-~~l~~~~~~~v~~~ 250 (402)
..+|..+--+||||.||||||.-. | ++|....-.......+.-+=|.-|.|--|..++... ..++. .+-.|.+.
T Consensus 265 MEaIn~n~vvIIcGeTGsGKTTQv--P--QFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~-~~~eVsYq 339 (1172)
T KOG0926|consen 265 MEAINENPVVIICGETGSGKTTQV--P--QFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGV-LGSEVSYQ 339 (1172)
T ss_pred HHHhhcCCeEEEecCCCCCccccc--h--HHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhcc-CccceeEE
Confidence 344455556899999999999853 3 333332221111223334556678877666655533 34443 34344332
Q ss_pred --cCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccC-C-CHHHHHHHHHHhhhhhc-cc
Q 015712 251 --NGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDR-G-FGPEISKILNPLKDSAL-KS 325 (402)
Q Consensus 251 --~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~-g-f~~~i~~il~~l~~~~~-~~ 325 (402)
+.| .......|.++|-|.|+.-+.+. +.|.....|||||||.-.-. + ....+.+|+..-..... .-
T Consensus 340 IRfd~--------ti~e~T~IkFMTDGVLLrEi~~D-flL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~~ 410 (1172)
T KOG0926|consen 340 IRFDG--------TIGEDTSIKFMTDGVLLREIEND-FLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQC 410 (1172)
T ss_pred EEecc--------ccCCCceeEEecchHHHHHHHHh-HhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhhhc
Confidence 222 22344679999999999988764 44788999999999963100 0 12223333332222111 11
Q ss_pred CCCCceEEEEeeccC
Q 015712 326 NGQGFQTILVTAAIA 340 (402)
Q Consensus 326 ~~~~~q~i~~SATl~ 340 (402)
.-....+|+||||+-
T Consensus 411 ~~kpLKLIIMSATLR 425 (1172)
T KOG0926|consen 411 QIKPLKLIIMSATLR 425 (1172)
T ss_pred ccCceeEEEEeeeEE
Confidence 223678999999985
No 136
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.49 E-value=7.7e-06 Score=81.31 Aligned_cols=195 Identities=12% Similarity=0.060 Sum_probs=111.2
Q ss_pred ccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCC
Q 015712 138 EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHP 217 (402)
Q Consensus 138 ~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~ 217 (402)
..+..|...+.+..-.+.|+..----.+..+...+..+.+++-++++|.||||||.-.--.++...... ..
T Consensus 22 k~~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~---------~~ 92 (699)
T KOG0925|consen 22 KAINPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSH---------LT 92 (699)
T ss_pred hhcCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhh---------cc
Confidence 337779999999998888887644344555666677777888999999999999987544455544432 23
Q ss_pred eEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEc
Q 015712 218 RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLD 297 (402)
Q Consensus 218 ~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlD 297 (402)
.+.-.-|.|--|.+++.... ...++..+--.|-.-..+ .-.....=+-.||-|.|++-.-... .+...++||+|
T Consensus 93 ~v~CTQprrvaamsva~RVa---dEMDv~lG~EVGysIrfE--dC~~~~T~Lky~tDgmLlrEams~p-~l~~y~viiLD 166 (699)
T KOG0925|consen 93 GVACTQPRRVAAMSVAQRVA---DEMDVTLGEEVGYSIRFE--DCTSPNTLLKYCTDGMLLREAMSDP-LLGRYGVIILD 166 (699)
T ss_pred ceeecCchHHHHHHHHHHHH---HHhccccchhcccccccc--ccCChhHHHHHhcchHHHHHHhhCc-ccccccEEEec
Confidence 44555577777777655332 222333332222211110 0000000011345554443322222 36788999999
Q ss_pred CCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhccccc
Q 015712 298 EADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERD 357 (402)
Q Consensus 298 Ead~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~~~ 357 (402)
|||.-. ---+-+..++..+...+ ++..+|++|||+.. .-++.|+.++-.+
T Consensus 167 eahERt--lATDiLmGllk~v~~~r-----pdLk~vvmSatl~a---~Kfq~yf~n~Pll 216 (699)
T KOG0925|consen 167 EAHERT--LATDILMGLLKEVVRNR-----PDLKLVVMSATLDA---EKFQRYFGNAPLL 216 (699)
T ss_pred hhhhhh--HHHHHHHHHHHHHHhhC-----CCceEEEeecccch---HHHHHHhCCCCee
Confidence 999531 01222333333332221 58999999999973 3346666664333
No 137
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.48 E-value=1.5e-06 Score=94.26 Aligned_cols=143 Identities=14% Similarity=0.130 Sum_probs=84.1
Q ss_pred CcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHH---------HhhccCCcceee
Q 015712 179 KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK---------FISHCARLDSSM 249 (402)
Q Consensus 179 ~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~---------~l~~~~~~~v~~ 249 (402)
.++.+.++||||||.+|+-.++...... +..+.||+||+.+.-..+...++ .......+....
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~--------~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~ 131 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKY--------GLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYV 131 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHc--------CCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEE
Confidence 4799999999999999988877655442 35689999999888777666554 111111233333
Q ss_pred ccCCC-------ChHHHHHH--h-----cCCccEEEeCchhhHHHhh-cC---------C-CC---CCCe-eEEEEcCCC
Q 015712 250 ENGGV-------SSKALEDV--S-----NAPIGMLIATPSEVLQHIE-DR---------N-VS---CDDI-RYVVLDEAD 300 (402)
Q Consensus 250 ~~gg~-------~~~~~~~~--l-----~~~~~IlV~TP~~l~~~l~-~~---------~-~~---l~~l-~~lVlDEad 300 (402)
+.++. +.....+. . .+..+|+|.|-+.|..-.. +. . .. +... -.||+||.|
T Consensus 132 ~~S~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh 211 (986)
T PRK15483 132 INAGDKKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPH 211 (986)
T ss_pred EecCcccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCC
Confidence 43322 11111111 1 1257999999998855321 10 0 11 1112 368899999
Q ss_pred ccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCc
Q 015712 301 TLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 341 (402)
Q Consensus 301 ~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~ 341 (402)
+|-..+ .....| ..+. +.-++.+|||++.
T Consensus 212 ~~~~~~--k~~~~i-~~ln---------pl~~lrysAT~~~ 240 (986)
T PRK15483 212 RFPRDN--KFYQAI-EALK---------PQMIIRFGATFPD 240 (986)
T ss_pred CCCcch--HHHHHH-HhcC---------cccEEEEeeecCC
Confidence 984322 223333 3332 2246789999987
No 138
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=98.48 E-value=4.1e-07 Score=98.06 Aligned_cols=127 Identities=17% Similarity=0.231 Sum_probs=101.1
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhcc
Q 015712 163 VPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHC 242 (402)
Q Consensus 163 ~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~ 242 (402)
.|+++|.-.--++..|+ |....||-||||+..+|++-..+. |..|-||+....||..=..++..+..+
T Consensus 138 ~~ydVQLiGgivLh~G~--IAEM~TGEGKTLvatlp~yLnAL~----------G~gVHvVTvNDYLA~RDaewm~p~y~f 205 (1025)
T PRK12900 138 VPYDVQLIGGIVLHSGK--ISEMATGEGKTLVSTLPTFLNALT----------GRGVHVVTVNDYLAQRDKEWMNPVFEF 205 (1025)
T ss_pred cccchHHhhhHHhhcCC--ccccCCCCCcchHhHHHHHHHHHc----------CCCcEEEeechHhhhhhHHHHHHHHHH
Confidence 68889988777777765 899999999999999999877664 666788888999999989999999999
Q ss_pred CCcceeeccCCCChHHHHHHhcCCccEEEeCchhh-HHHhhcCC------CCCCCeeEEEEcCCCccc
Q 015712 243 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV-LQHIEDRN------VSCDDIRYVVLDEADTLF 303 (402)
Q Consensus 243 ~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l-~~~l~~~~------~~l~~l~~lVlDEad~~l 303 (402)
+|+.|+++..+.+...+...+ .|||..||..-| .++|+.+. ...+.+.|.||||+|.+|
T Consensus 206 lGLtVg~i~~~~~~~~Rr~aY--~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvDSvL 271 (1025)
T PRK12900 206 HGLSVGVILNTMRPEERREQY--LCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVDSVL 271 (1025)
T ss_pred hCCeeeeeCCCCCHHHHHHhC--CCcceecCCCccccccchhccccchhhhhccCCceEEEechhhhh
Confidence 999999998777766654444 589999999765 34443321 224678899999999864
No 139
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=98.47 E-value=2.2e-07 Score=92.33 Aligned_cols=153 Identities=16% Similarity=0.147 Sum_probs=105.1
Q ss_pred CCcHHHHHHHHHHHc-C--CcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHh
Q 015712 163 VPSEIQCVGIPAVLN-G--KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 239 (402)
Q Consensus 163 ~pt~iQ~~~i~~il~-g--~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l 239 (402)
.++|+|..++..+.. | ++-||+.|.|+|||++-+-+++. -..++||||.+---+.|....+..+
T Consensus 302 ~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~t-------------ikK~clvLcts~VSVeQWkqQfk~w 368 (776)
T KOG1123|consen 302 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACT-------------IKKSCLVLCTSAVSVEQWKQQFKQW 368 (776)
T ss_pred ccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeee-------------ecccEEEEecCccCHHHHHHHHHhh
Confidence 467999999998873 3 58899999999999987555442 2558999999999999988888877
Q ss_pred hccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcC--------CCCCCCeeEEEEcCCCccccCCCHHHH
Q 015712 240 SHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR--------NVSCDDIRYVVLDEADTLFDRGFGPEI 311 (402)
Q Consensus 240 ~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~--------~~~l~~l~~lVlDEad~~l~~gf~~~i 311 (402)
+...+-.++.++.+... ....++.|+|+|-..+..--++. .+.-+...++|+||+|.+-. ...
T Consensus 369 sti~d~~i~rFTsd~Ke-----~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA----~MF 439 (776)
T KOG1123|consen 369 STIQDDQICRFTSDAKE-----RFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPA----KMF 439 (776)
T ss_pred cccCccceEEeeccccc-----cCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchH----HHH
Confidence 65555566666655432 33467899999986553221110 12235688999999998732 233
Q ss_pred HHHHHHhhhhhcccCCCCceEEEEeeccCchhHHH
Q 015712 312 SKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQ 346 (402)
Q Consensus 312 ~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~ 346 (402)
++++..+. .+-.++++||+-.+...+
T Consensus 440 RRVlsiv~---------aHcKLGLTATLvREDdKI 465 (776)
T KOG1123|consen 440 RRVLSIVQ---------AHCKLGLTATLVREDDKI 465 (776)
T ss_pred HHHHHHHH---------HHhhccceeEEeeccccc
Confidence 33444333 335789999997654433
No 140
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.46 E-value=3.3e-06 Score=86.81 Aligned_cols=170 Identities=14% Similarity=0.068 Sum_probs=102.0
Q ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHH-HH
Q 015712 160 GLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMA-KF 238 (402)
Q Consensus 160 g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~-~~ 238 (402)
.|--.+..+.+.+..+..++-+|+.+.||||||.-..-. |+.+.- .....+-+.-|.|.-|..+++.. +.
T Consensus 353 q~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~Qy----L~edGY-----~~~GmIGcTQPRRvAAiSVAkrVa~E 423 (1042)
T KOG0924|consen 353 QYLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQY----LYEDGY-----ADNGMIGCTQPRRVAAISVAKRVAEE 423 (1042)
T ss_pred hhcchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHH----HHhccc-----ccCCeeeecCchHHHHHHHHHHHHHH
Confidence 344556778888888888888999999999999865433 333211 12223444558888888776644 44
Q ss_pred hhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCCCHHHHHHHHHHh
Q 015712 239 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318 (402)
Q Consensus 239 l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~gf~~~i~~il~~l 318 (402)
++-.+|-.|++.+.- .........|=+.|-|.|+.-.-. .-.|.+..+||+||||.-. -..+-+.-|++.+
T Consensus 424 M~~~lG~~VGYsIRF------EdvT~~~T~IkymTDGiLLrEsL~-d~~L~kYSviImDEAHERs--lNtDilfGllk~~ 494 (1042)
T KOG0924|consen 424 MGVTLGDTVGYSIRF------EDVTSEDTKIKYMTDGILLRESLK-DRDLDKYSVIIMDEAHERS--LNTDILFGLLKKV 494 (1042)
T ss_pred hCCccccccceEEEe------eecCCCceeEEEeccchHHHHHhh-hhhhhheeEEEechhhhcc--cchHHHHHHHHHH
Confidence 444444444332211 112223356779999988765322 2246788999999999642 1223333344433
Q ss_pred hhhhcccCCCCceEEEEeeccCchhHHHHHHHhh-ccc
Q 015712 319 KDSALKSNGQGFQTILVTAAIAEMLGEQLSSLME-CLE 355 (402)
Q Consensus 319 ~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~-~~~ 355 (402)
...+ .+..+|+.||||.. +.+ ..|+. .|.
T Consensus 495 larR-----rdlKliVtSATm~a--~kf-~nfFgn~p~ 524 (1042)
T KOG0924|consen 495 LARR-----RDLKLIVTSATMDA--QKF-SNFFGNCPQ 524 (1042)
T ss_pred HHhh-----ccceEEEeeccccH--HHH-HHHhCCCce
Confidence 3222 48999999999973 444 55555 443
No 141
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.42 E-value=1.6e-06 Score=78.74 Aligned_cols=125 Identities=22% Similarity=0.264 Sum_probs=74.8
Q ss_pred CCcHHHHHHHHHHHcCC--cEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhh
Q 015712 163 VPSEIQCVGIPAVLNGK--SVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 240 (402)
Q Consensus 163 ~pt~iQ~~~i~~il~g~--dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~ 240 (402)
++++-|..++..++.+. -++++|+.|+|||.+. -.+...+.. .+.++++++||...+..+.+..
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l-~~~~~~~~~---------~g~~v~~~apT~~Aa~~L~~~~---- 66 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLL-KALAEALEA---------AGKRVIGLAPTNKAAKELREKT---- 66 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHH-HHHHHHHHH---------TT--EEEEESSHHHHHHHHHHH----
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHH-HHHHHHHHh---------CCCeEEEECCcHHHHHHHHHhh----
Confidence 36788999999997544 4788899999999753 345554444 4679999999999888755541
Q ss_pred ccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCC----CCCCCeeEEEEcCCCccccCCCHHHHHHHHH
Q 015712 241 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRN----VSCDDIRYVVLDEADTLFDRGFGPEISKILN 316 (402)
Q Consensus 241 ~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~----~~l~~l~~lVlDEad~~l~~gf~~~i~~il~ 316 (402)
++. ..|-.+++....... ..+...++||||||-++ -...+..++.
T Consensus 67 ---~~~------------------------a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv----~~~~~~~ll~ 115 (196)
T PF13604_consen 67 ---GIE------------------------AQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMV----DSRQLARLLR 115 (196)
T ss_dssp ---TS-------------------------EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-----BHHHHHHHHH
T ss_pred ---Ccc------------------------hhhHHHHHhcCCcccccccccCCcccEEEEeccccc----CHHHHHHHHH
Confidence 111 122222222111111 11455679999999966 2567778888
Q ss_pred HhhhhhcccCCCCceEEEEeecc
Q 015712 317 PLKDSALKSNGQGFQTILVTAAI 339 (402)
Q Consensus 317 ~l~~~~~~~~~~~~q~i~~SATl 339 (402)
.+.. .+.++|++--+.
T Consensus 116 ~~~~-------~~~klilvGD~~ 131 (196)
T PF13604_consen 116 LAKK-------SGAKLILVGDPN 131 (196)
T ss_dssp HS-T--------T-EEEEEE-TT
T ss_pred HHHh-------cCCEEEEECCcc
Confidence 7763 356788876543
No 142
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=98.42 E-value=3.5e-06 Score=87.70 Aligned_cols=166 Identities=20% Similarity=0.264 Sum_probs=107.5
Q ss_pred CCcHHHHHHHHHHH----cCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHH
Q 015712 163 VPSEIQCVGIPAVL----NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 238 (402)
Q Consensus 163 ~pt~iQ~~~i~~il----~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~ 238 (402)
.+.++|.+.+..+. .|-+.|+.-..|-|||+-- |.++.++..... ....-||+||---|.+ ++..
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQt-Is~l~yl~~~~~------~~GPfLVi~P~StL~N----W~~E 235 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQT-ISLLGYLKGRKG------IPGPFLVIAPKSTLDN----WMNE 235 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHH-HHHHHHHHHhcC------CCCCeEEEeeHhhHHH----HHHH
Confidence 67888988877654 5778999999999999863 566666654321 2334688999777654 3333
Q ss_pred hhccC-CcceeeccCCCChHHHH--HHh-cCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCCCHHHHHHH
Q 015712 239 ISHCA-RLDSSMENGGVSSKALE--DVS-NAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314 (402)
Q Consensus 239 l~~~~-~~~v~~~~gg~~~~~~~--~~l-~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~gf~~~i~~i 314 (402)
+.+.+ ++++++++|+....... ..+ ..+.+|+|+|-+..+.- ...+.--..+||||||||++= +-...+..+
T Consensus 236 f~rf~P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d--k~~lk~~~W~ylvIDEaHRiK--N~~s~L~~~ 311 (971)
T KOG0385|consen 236 FKRFTPSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD--KSFLKKFNWRYLVIDEAHRIK--NEKSKLSKI 311 (971)
T ss_pred HHHhCCCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh--HHHHhcCCceEEEechhhhhc--chhhHHHHH
Confidence 43333 68899999886433221 222 33689999998877543 122333457999999999983 334556677
Q ss_pred HHHhhhhhcccCCCCceEEEEeecc-CchhHHHHHHHhhc
Q 015712 315 LNPLKDSALKSNGQGFQTILVTAAI-AEMLGEQLSSLMEC 353 (402)
Q Consensus 315 l~~l~~~~~~~~~~~~q~i~~SATl-~~~v~~~~~~~l~~ 353 (402)
++.+. -.-.++++.|. -+++.++ ..+|+.
T Consensus 312 lr~f~---------~~nrLLlTGTPLQNNL~EL-WaLLnF 341 (971)
T KOG0385|consen 312 LREFK---------TDNRLLLTGTPLQNNLHEL-WALLNF 341 (971)
T ss_pred HHHhc---------ccceeEeeCCcccccHHHH-HHHHHh
Confidence 77775 23456666665 4444444 555554
No 143
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.38 E-value=3.9e-06 Score=92.91 Aligned_cols=138 Identities=18% Similarity=0.182 Sum_probs=95.3
Q ss_pred CcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHH
Q 015712 179 KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258 (402)
Q Consensus 179 ~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~ 258 (402)
+.-+|.--||||||++.+..+ ..+... ...+.++||+-.++|-.|+...+..+........ ...+...
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A-~~l~~~-------~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~ 341 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLA-RLLLEL-------PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTSE 341 (962)
T ss_pred CceEEEeecCCchHHHHHHHH-HHHHhc-------cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCHHH
Confidence 458999999999999864443 333332 3688999999999999999999999876543322 3445555
Q ss_pred HHHHhcCC-ccEEEeCchhhHHHhhcC-CCCCC-CeeEEEEcCCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEE
Q 015712 259 LEDVSNAP-IGMLIATPSEVLQHIEDR-NVSCD-DIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILV 335 (402)
Q Consensus 259 ~~~~l~~~-~~IlV~TP~~l~~~l~~~-~~~l~-~l~~lVlDEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~ 335 (402)
-.+.+..+ -.|+|+|-+.|-..+... ...+. +=-.||+||||+- .++.....+-..++ +...++|
T Consensus 342 Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRS---Q~G~~~~~~~~~~~---------~a~~~gF 409 (962)
T COG0610 342 LKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRS---QYGELAKLLKKALK---------KAIFIGF 409 (962)
T ss_pred HHHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhc---cccHHHHHHHHHhc---------cceEEEe
Confidence 55566544 489999999998887654 11122 2236778999974 24444444445554 5789999
Q ss_pred eeccC
Q 015712 336 TAAIA 340 (402)
Q Consensus 336 SATl~ 340 (402)
|.|.-
T Consensus 410 TGTPi 414 (962)
T COG0610 410 TGTPI 414 (962)
T ss_pred eCCcc
Confidence 99974
No 144
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.35 E-value=1.2e-06 Score=94.71 Aligned_cols=127 Identities=18% Similarity=0.218 Sum_probs=97.6
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhcc
Q 015712 163 VPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHC 242 (402)
Q Consensus 163 ~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~ 242 (402)
.|+++|.-.--++..|+ |....||-||||+..+|++-..+. |..|-||+.+..||..=..++..+..+
T Consensus 169 ~~yDVQliGgivLh~G~--IAEM~TGEGKTLvAtlp~yLnAL~----------GkgVHvVTVNDYLA~RDaewmgply~f 236 (1112)
T PRK12901 169 VHYDVQLIGGVVLHQGK--IAEMATGEGKTLVATLPVYLNALT----------GNGVHVVTVNDYLAKRDSEWMGPLYEF 236 (1112)
T ss_pred cccchHHhhhhhhcCCc--eeeecCCCCchhHHHHHHHHHHHc----------CCCcEEEEechhhhhccHHHHHHHHHH
Confidence 67888877766666664 999999999999999999877764 666888899999999988999999999
Q ss_pred CCcceeeccC-CCChHHHHHHhcCCccEEEeCchhh-HHHhhcCC------CCCCCeeEEEEcCCCccc
Q 015712 243 ARLDSSMENG-GVSSKALEDVSNAPIGMLIATPSEV-LQHIEDRN------VSCDDIRYVVLDEADTLF 303 (402)
Q Consensus 243 ~~~~v~~~~g-g~~~~~~~~~l~~~~~IlV~TP~~l-~~~l~~~~------~~l~~l~~lVlDEad~~l 303 (402)
+|+.|+++.. +.+....... -.|||..||..-| .++|+.+. ...+.+.|.||||+|.+|
T Consensus 237 LGLsvg~i~~~~~~~~~rr~a--Y~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSIL 303 (1112)
T PRK12901 237 HGLSVDCIDKHQPNSEARRKA--YNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVL 303 (1112)
T ss_pred hCCceeecCCCCCCHHHHHHh--CCCcceecCCCccccccchhccccchHhhhCcCCceeEeechhhhh
Confidence 9999998876 4454444333 3589999999766 34444321 224568899999999865
No 145
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=98.32 E-value=8e-06 Score=82.15 Aligned_cols=159 Identities=14% Similarity=0.149 Sum_probs=108.0
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHHhhccC-Cc----ceeeccC---------------CCChHHHHHHhc----------
Q 015712 215 MHPRAIVLCTTEESADQGFHMAKFISHCA-RL----DSSMENG---------------GVSSKALEDVSN---------- 264 (402)
Q Consensus 215 ~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~-~~----~v~~~~g---------------g~~~~~~~~~l~---------- 264 (402)
..|++|||+|+|..|.++.+.+-.+.... .+ +..--+| +....+......
T Consensus 36 tRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlG 115 (442)
T PF06862_consen 36 TRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLG 115 (442)
T ss_pred CCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEe
Confidence 57999999999999999888776665431 00 0000111 000111111100
Q ss_pred --------------CCccEEEeCchhhHHHhhc------CCCCCCCeeEEEEcCCCccccCCCHHHHHHHHHHhhhhhcc
Q 015712 265 --------------APIGMLIATPSEVLQHIED------RNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALK 324 (402)
Q Consensus 265 --------------~~~~IlV~TP~~l~~~l~~------~~~~l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~~~~~~ 324 (402)
...|||||+|-.|...+.. ..-.|+.+.++|||.||.|+ |.-.+++..++..|...-.+
T Consensus 116 ik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~-MQNW~Hv~~v~~~lN~~P~~ 194 (442)
T PF06862_consen 116 IKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLL-MQNWEHVLHVFEHLNLQPKK 194 (442)
T ss_pred EEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHH-HhhHHHHHHHHHHhccCCCC
Confidence 1468999999999888874 12347899999999999876 55688888888888654433
Q ss_pred cCC----------------CCceEEEEeeccCchhHHHHHHHhhccccc------cC--CceeeeeeecccceE
Q 015712 325 SNG----------------QGFQTILVTAAIAEMLGEQLSSLMECLERD------NA--GKVTAMLLEMDQAEV 374 (402)
Q Consensus 325 ~~~----------------~~~q~i~~SATl~~~v~~~~~~~l~~~~~~------~~--~~~~~~~~~v~q~~~ 374 (402)
.++ .-+|+|++|+..++++..+....+.|.... .. +.+....+.+.|...
T Consensus 195 ~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~ 268 (442)
T PF06862_consen 195 SHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQ 268 (442)
T ss_pred CCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEE
Confidence 322 238999999999999999999988886542 22 556677777777644
No 146
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.32 E-value=2.1e-06 Score=79.01 Aligned_cols=73 Identities=15% Similarity=0.192 Sum_probs=49.7
Q ss_pred CcHHHHHHHHHHHcCCc-EEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHH
Q 015712 164 PSEIQCVGIPAVLNGKS-VVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 238 (402)
Q Consensus 164 pt~iQ~~~i~~il~g~d-vli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~ 238 (402)
+.+-|..|+..++.... .+|.||.|||||... ..++..+..... ......+.++||++||..-+..+...+..
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l-~~~i~~~~~~~~-~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTTL-ASIIAQLLQRFK-SRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHHH-HHHHHHH--------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHHH-HHHHHHhccchh-hhhhhccccceeecCCchhHHHHHHHHHh
Confidence 56789999999999888 999999999999543 334444421000 00022578999999999999988887766
No 147
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=98.25 E-value=2.7e-05 Score=82.81 Aligned_cols=161 Identities=17% Similarity=0.142 Sum_probs=101.9
Q ss_pred CCcHHHHHHHHHHHc---CC-------cEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHH
Q 015712 163 VPSEIQCVGIPAVLN---GK-------SVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQG 232 (402)
Q Consensus 163 ~pt~iQ~~~i~~il~---g~-------dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi 232 (402)
.++|+|++.+..+.. |. .+|+.-..|+|||+.. |++++.+++..+.- .+.-.++|||+|. .|+.-.
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~-IsflwtlLrq~P~~--~~~~~k~lVV~P~-sLv~nW 313 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQC-ISFIWTLLRQFPQA--KPLINKPLVVAPS-SLVNNW 313 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHH-HHHHHHHHHhCcCc--cccccccEEEccH-HHHHHH
Confidence 568999999988653 32 3677777999999975 55555555432100 0112578999995 566666
Q ss_pred HHHHHHhhccCCcceeeccCCCCh--HHHHHHhc-----CCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccC
Q 015712 233 FHMAKFISHCARLDSSMENGGVSS--KALEDVSN-----APIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDR 305 (402)
Q Consensus 233 ~~~~~~l~~~~~~~v~~~~gg~~~--~~~~~~l~-----~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~ 305 (402)
++.+.++.....+....++|.... ......+. -..-|++.+-+.+.+.++ .+....+++||+||.|++ .
T Consensus 314 kkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~--~il~~~~glLVcDEGHrl--k 389 (776)
T KOG0390|consen 314 KKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCR--KILLIRPGLLVCDEGHRL--K 389 (776)
T ss_pred HHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHH--HHhcCCCCeEEECCCCCc--c
Confidence 777776655446666677777663 11111111 113466777777766554 344577899999999998 3
Q ss_pred CCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccC
Q 015712 306 GFGPEISKILNPLKDSALKSNGQGFQTILVTAAIA 340 (402)
Q Consensus 306 gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~ 340 (402)
+-...+...+..+. -.+.|++|.|+-
T Consensus 390 N~~s~~~kaL~~l~---------t~rRVLLSGTp~ 415 (776)
T KOG0390|consen 390 NSDSLTLKALSSLK---------TPRRVLLTGTPI 415 (776)
T ss_pred chhhHHHHHHHhcC---------CCceEEeeCCcc
Confidence 33344555555554 467888999974
No 148
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.23 E-value=1.6e-05 Score=81.74 Aligned_cols=162 Identities=14% Similarity=0.090 Sum_probs=97.8
Q ss_pred cHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHH-HHHhhccC
Q 015712 165 SEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHM-AKFISHCA 243 (402)
Q Consensus 165 t~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~-~~~l~~~~ 243 (402)
+++-.+.+.++...+-+||.|.||||||.-. | ++|....- ...+.++-+.-|.|--|..++.. .+.++-.+
T Consensus 267 y~ykdell~av~e~QVLiI~GeTGSGKTTQi--P--QyL~EaGy----tk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkL 338 (902)
T KOG0923|consen 267 YPYKDELLKAVKEHQVLIIVGETGSGKTTQI--P--QYLYEAGY----TKGGKKIGCTQPRRVAAMSVAARVAEEMGVKL 338 (902)
T ss_pred hhhHHHHHHHHHhCcEEEEEcCCCCCccccc--c--HHHHhccc----ccCCceEeecCcchHHHHHHHHHHHHHhCccc
Confidence 4555666777888888999999999999853 3 23333211 22345566777888888776553 34444333
Q ss_pred CcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccC-C-CHHHHHHHHHHhhhh
Q 015712 244 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDR-G-FGPEISKILNPLKDS 321 (402)
Q Consensus 244 ~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~-g-f~~~i~~il~~l~~~ 321 (402)
|-.|++-+. .........-|=+.|-|.|+.-+.. -.+|....+|||||||.-.-. + ...-+..|.+.-
T Consensus 339 G~eVGYsIR------FEdcTSekTvlKYMTDGmLlREfL~-epdLasYSViiiDEAHERTL~TDILfgLvKDIar~R--- 408 (902)
T KOG0923|consen 339 GHEVGYSIR------FEDCTSEKTVLKYMTDGMLLREFLS-EPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFR--- 408 (902)
T ss_pred ccccceEEE------eccccCcceeeeeecchhHHHHHhc-cccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhC---
Confidence 333322110 0111122344669999999876654 345788999999999953111 1 122233333322
Q ss_pred hcccCCCCceEEEEeeccCchhHHHHHHHhhc
Q 015712 322 ALKSNGQGFQTILVTAAIAEMLGEQLSSLMEC 353 (402)
Q Consensus 322 ~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~ 353 (402)
++..+++.|||+.. +-++.|+.+
T Consensus 409 ------pdLKllIsSAT~DA---ekFS~fFDd 431 (902)
T KOG0923|consen 409 ------PDLKLLISSATMDA---EKFSAFFDD 431 (902)
T ss_pred ------CcceEEeeccccCH---HHHHHhccC
Confidence 58899999999984 334556655
No 149
>COG4889 Predicted helicase [General function prediction only]
Probab=98.22 E-value=5e-06 Score=87.57 Aligned_cols=147 Identities=14% Similarity=0.143 Sum_probs=92.9
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCC-----cEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCC
Q 015712 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGK-----SVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMH 216 (402)
Q Consensus 142 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g~-----dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~ 216 (402)
.|+.+.. .++...|.-..=.+|+|+|+.||.++.+|- .-||-| .|+|||+.. +-|.+.+. .
T Consensus 141 DW~~f~p-~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMA-cGTGKTfTs-LkisEala-----------~ 206 (1518)
T COG4889 141 DWDIFDP-TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMA-CGTGKTFTS-LKISEALA-----------A 206 (1518)
T ss_pred ChhhcCc-cccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEe-cCCCccchH-HHHHHHHh-----------h
Confidence 4554433 344444444455689999999999988652 233333 689999875 44455443 3
Q ss_pred CeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHH--------------------HH-----HHhcCCccEEE
Q 015712 217 PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA--------------------LE-----DVSNAPIGMLI 271 (402)
Q Consensus 217 ~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~--------------------~~-----~~l~~~~~IlV 271 (402)
.++|+|+|+..|..|..+....- ...+++...++++..... .. +....+.-||+
T Consensus 207 ~~iL~LvPSIsLLsQTlrew~~~-~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvF 285 (1518)
T COG4889 207 ARILFLVPSISLLSQTLREWTAQ-KELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVF 285 (1518)
T ss_pred hheEeecchHHHHHHHHHHHhhc-cCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEE
Confidence 68999999999999976655432 122344333333221110 00 11123556899
Q ss_pred eCchhhHHHhhcCCCCCCCeeEEEEcCCCccc
Q 015712 272 ATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 303 (402)
Q Consensus 272 ~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l 303 (402)
+|-+.+...-.....-+..+++||.||||+-.
T Consensus 286 sTYQSl~~i~eAQe~G~~~fDliicDEAHRTt 317 (1518)
T COG4889 286 STYQSLPRIKEAQEAGLDEFDLIICDEAHRTT 317 (1518)
T ss_pred EcccchHHHHHHHHcCCCCccEEEecchhccc
Confidence 99998877655444557889999999999864
No 150
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.18 E-value=1.3e-05 Score=72.94 Aligned_cols=146 Identities=17% Similarity=0.236 Sum_probs=75.3
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHH----HHHH
Q 015712 162 FVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGF----HMAK 237 (402)
Q Consensus 162 ~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~----~~~~ 237 (402)
.-.+.-|..++.++....-+++.||.|||||+..+...++.+... ...+.+|+-|+.+....+- ..-+
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g--------~~~kiii~Rp~v~~~~~lGflpG~~~e 74 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEG--------EYDKIIITRPPVEAGEDLGFLPGDLEE 74 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTT--------S-SEEEEEE-S--TT----SS------
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhC--------CCcEEEEEecCCCCccccccCCCCHHH
Confidence 445789999999999888899999999999999888888887752 3557888888765311110 0000
Q ss_pred HhhccCC-c--ceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCCCHHHHHHH
Q 015712 238 FISHCAR-L--DSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 314 (402)
Q Consensus 238 ~l~~~~~-~--~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~gf~~~i~~i 314 (402)
++..+.. + ....+.+...... .+. ...|-+..+..+ + +..+++ .+||||||..+ -..++..+
T Consensus 75 K~~p~~~p~~d~l~~~~~~~~~~~---~~~-~~~Ie~~~~~~i----R--Grt~~~-~~iIvDEaQN~----t~~~~k~i 139 (205)
T PF02562_consen 75 KMEPYLRPIYDALEELFGKEKLEE---LIQ-NGKIEIEPLAFI----R--GRTFDN-AFIIVDEAQNL----TPEELKMI 139 (205)
T ss_dssp ---TTTHHHHHHHTTTS-TTCHHH---HHH-TTSEEEEEGGGG----T--T--B-S-EEEEE-SGGG------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhChHhHHH---Hhh-cCeEEEEehhhh----c--Cccccc-eEEEEecccCC----CHHHHHHH
Confidence 0000000 0 0001112222221 111 234555554332 2 223333 89999999987 47889999
Q ss_pred HHHhhhhhcccCCCCceEEEEeec
Q 015712 315 LNPLKDSALKSNGQGFQTILVTAA 338 (402)
Q Consensus 315 l~~l~~~~~~~~~~~~q~i~~SAT 338 (402)
+.++. .++++|++.-.
T Consensus 140 lTR~g--------~~skii~~GD~ 155 (205)
T PF02562_consen 140 LTRIG--------EGSKIIITGDP 155 (205)
T ss_dssp HTTB---------TT-EEEEEE--
T ss_pred HcccC--------CCcEEEEecCc
Confidence 99886 46788887654
No 151
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.15 E-value=1.3e-05 Score=84.97 Aligned_cols=151 Identities=17% Similarity=0.177 Sum_probs=94.9
Q ss_pred cEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHH
Q 015712 180 SVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259 (402)
Q Consensus 180 dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~ 259 (402)
=.++.||.|||||.+..-++-+.+.. ...++|+|+..+.|+.+....++...- .++....-.++....
T Consensus 51 V~vVRSpMGTGKTtaLi~wLk~~l~~---------~~~~VLvVShRrSL~~sL~~rf~~~~l-~gFv~Y~d~~~~~i~-- 118 (824)
T PF02399_consen 51 VLVVRSPMGTGKTTALIRWLKDALKN---------PDKSVLVVSHRRSLTKSLAERFKKAGL-SGFVNYLDSDDYIID-- 118 (824)
T ss_pred eEEEECCCCCCcHHHHHHHHHHhccC---------CCCeEEEEEhHHHHHHHHHHHHhhcCC-Ccceeeecccccccc--
Confidence 47999999999998875554443322 467999999999999999888775421 122221111111110
Q ss_pred HHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCCCHHHHH---HHHHHhhhhhcccCCCCceEEEEe
Q 015712 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEIS---KILNPLKDSALKSNGQGFQTILVT 336 (402)
Q Consensus 260 ~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~gf~~~i~---~il~~l~~~~~~~~~~~~q~i~~S 336 (402)
....+-|++..+.|..+.. -.+.+.++|||||+...+..-|.+.+. ..+..+.... .....+|++-
T Consensus 119 ----~~~~~rLivqIdSL~R~~~---~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI----~~ak~VI~~D 187 (824)
T PF02399_consen 119 ----GRPYDRLIVQIDSLHRLDG---SLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELI----RNAKTVIVMD 187 (824)
T ss_pred ----ccccCeEEEEehhhhhccc---ccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHH----HhCCeEEEec
Confidence 1124567777777755432 235678999999998776553332222 2222221111 0256899999
Q ss_pred eccCchhHHHHHHHhhc
Q 015712 337 AAIAEMLGEQLSSLMEC 353 (402)
Q Consensus 337 ATl~~~v~~~~~~~l~~ 353 (402)
|++.+.+-+++..+..+
T Consensus 188 A~ln~~tvdFl~~~Rp~ 204 (824)
T PF02399_consen 188 ADLNDQTVDFLASCRPD 204 (824)
T ss_pred CCCCHHHHHHHHHhCCC
Confidence 99999999998886544
No 152
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.14 E-value=4.7e-05 Score=72.58 Aligned_cols=179 Identities=17% Similarity=0.134 Sum_probs=113.8
Q ss_pred ccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHc----------CCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCC
Q 015712 144 QELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLN----------GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMK 213 (402)
Q Consensus 144 ~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~----------g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~ 213 (402)
-.+.|++.++. .| .++..|.+++-.+.+ +.-.++--.||.||--...--|++..++
T Consensus 24 y~~~lp~~~~~----~g--~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~-------- 89 (303)
T PF13872_consen 24 YRLHLPEEVID----SG--LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLR-------- 89 (303)
T ss_pred cccCCCHHHHh----cc--cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHc--------
Confidence 34567776553 23 468889988766542 3357777789999987776667776665
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcC---CCCC--
Q 015712 214 PMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR---NVSC-- 288 (402)
Q Consensus 214 ~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~---~~~l-- 288 (402)
...++|+++.+..|-....+.++.++.. .+.+..+..- ... ....-.-.||++|-..|...-..+ ...+
T Consensus 90 -Gr~r~vwvS~s~dL~~Da~RDl~DIG~~-~i~v~~l~~~-~~~---~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~q 163 (303)
T PF13872_consen 90 -GRKRAVWVSVSNDLKYDAERDLRDIGAD-NIPVHPLNKF-KYG---DIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQ 163 (303)
T ss_pred -CCCceEEEECChhhhhHHHHHHHHhCCC-cccceechhh-ccC---cCCCCCCCccchhHHHHHhHHhccCCccchHHH
Confidence 3457999999999999999999988654 3333332211 000 011123468999988776654321 1010
Q ss_pred -------CCeeEEEEcCCCccccCCC--------HHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhc
Q 015712 289 -------DDIRYVVLDEADTLFDRGF--------GPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMEC 353 (402)
Q Consensus 289 -------~~l~~lVlDEad~~l~~gf--------~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~ 353 (402)
+.=.+|||||||.+-+..- +..+..+-+.|+ +.+++.+|||-..+..++. |+.+
T Consensus 164 l~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP---------~ARvvY~SATgasep~Nma--Ym~R 232 (303)
T PF13872_consen 164 LVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLP---------NARVVYASATGASEPRNMA--YMSR 232 (303)
T ss_pred HHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCC---------CCcEEEecccccCCCceee--eeee
Confidence 1124899999999855432 123444444554 6789999999988877773 5544
No 153
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.09 E-value=8.1e-07 Score=95.01 Aligned_cols=165 Identities=15% Similarity=0.159 Sum_probs=117.4
Q ss_pred CCcHHHHHHHHHHHc-CCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhc
Q 015712 163 VPSEIQCVGIPAVLN-GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 241 (402)
Q Consensus 163 ~pt~iQ~~~i~~il~-g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~ 241 (402)
...|+|...+..+.. ..+.++.+|||+|||++|.+.+...+... .+.+++|++|-..|+..-.+.......
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~--------p~~kvvyIap~kalvker~~Dw~~r~~ 998 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYY--------PGSKVVYIAPDKALVKERSDDWSKRDE 998 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccC--------CCccEEEEcCCchhhcccccchhhhcc
Confidence 445566665544432 45789999999999999999988877653 467999999999999886666655544
Q ss_pred cCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcC--CCCCCCeeEEEEcCCCccccCCCHHHHHHHHHHhh
Q 015712 242 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR--NVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (402)
Q Consensus 242 ~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~--~~~l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~ 319 (402)
..|++++-+.|+...+.. .+ ..++|+|+||++...+.+.+ .-.++++..+|+||.|++ ..++++-++.|.....
T Consensus 999 ~~g~k~ie~tgd~~pd~~--~v-~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hll-g~~rgPVle~ivsr~n 1074 (1230)
T KOG0952|consen 999 LPGIKVIELTGDVTPDVK--AV-READIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLL-GEDRGPVLEVIVSRMN 1074 (1230)
T ss_pred cCCceeEeccCccCCChh--he-ecCceEEcccccccCccccccchhhhccccceeecccccc-cCCCcceEEEEeeccc
Confidence 458899999988776622 22 34789999999988877753 345789999999999965 5666777666655544
Q ss_pred hhhcccCCCCceEEEEeeccC
Q 015712 320 DSALKSNGQGFQTILVTAAIA 340 (402)
Q Consensus 320 ~~~~~~~~~~~q~i~~SATl~ 340 (402)
. .....+..+|.+++|--+.
T Consensus 1075 ~-~s~~t~~~vr~~glsta~~ 1094 (1230)
T KOG0952|consen 1075 Y-ISSQTEEPVRYLGLSTALA 1094 (1230)
T ss_pred c-CccccCcchhhhhHhhhhh
Confidence 3 1222344566776665443
No 154
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.09 E-value=1.1e-05 Score=83.36 Aligned_cols=163 Identities=15% Similarity=0.113 Sum_probs=97.1
Q ss_pred CcHHHHHHHHHHHc-----CCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHH
Q 015712 164 PSEIQCVGIPAVLN-----GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 238 (402)
Q Consensus 164 pt~iQ~~~i~~il~-----g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~ 238 (402)
+-|+|..++..+.- +..-|+....|-|||++.+--|+..=.......+........|||||- .|..|.+..+..
T Consensus 326 LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~Pa-Sli~qW~~Ev~~ 404 (901)
T KOG4439|consen 326 LMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPA-SLIHQWEAEVAR 404 (901)
T ss_pred cchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcH-HHHHHHHHHHHH
Confidence 35799999888763 335788888999999987555555433222221111112259999995 577777776655
Q ss_pred hhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHH----HhhcC--CCCCC--CeeEEEEcCCCccccCCCHHH
Q 015712 239 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQ----HIEDR--NVSCD--DIRYVVLDEADTLFDRGFGPE 310 (402)
Q Consensus 239 l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~----~l~~~--~~~l~--~l~~lVlDEad~~l~~gf~~~ 310 (402)
-....-++|.+++|.....-..+.+ ..+||||+|..-+.. -+..+ ...+. ....||+||||.+-+. ..+
T Consensus 405 rl~~n~LsV~~~HG~n~r~i~~~~L-~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN~--~tq 481 (901)
T KOG4439|consen 405 RLEQNALSVYLYHGPNKREISAKEL-RKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIRNS--NTQ 481 (901)
T ss_pred HHhhcceEEEEecCCccccCCHHHH-hhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhccc--chh
Confidence 4445568888888876432222333 348999999865544 11111 11122 2467999999988443 334
Q ss_pred HHHHHHHhhhhhcccCCCCceEEEEeecc
Q 015712 311 ISKILNPLKDSALKSNGQGFQTILVTAAI 339 (402)
Q Consensus 311 i~~il~~l~~~~~~~~~~~~q~i~~SATl 339 (402)
-...+..|. ..-...+|+|.
T Consensus 482 ~S~AVC~L~---------a~~RWclTGTP 501 (901)
T KOG4439|consen 482 CSKAVCKLS---------AKSRWCLTGTP 501 (901)
T ss_pred HHHHHHHHh---------hcceeecccCc
Confidence 444444443 23345566664
No 155
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=98.04 E-value=5.6e-05 Score=79.23 Aligned_cols=161 Identities=17% Similarity=0.192 Sum_probs=99.5
Q ss_pred CCcHHHHHHHHHHH----cCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHH
Q 015712 163 VPSEIQCVGIPAVL----NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 238 (402)
Q Consensus 163 ~pt~iQ~~~i~~il----~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~ 238 (402)
.++++|+.++..+. ++.--|+.-..|-|||.-. +..|..+.... .-...||||||.- +..|....+..
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQi-isFLaaL~~S~------k~~~paLIVCP~T-ii~qW~~E~~~ 276 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQI-ISFLAALHHSG------KLTKPALIVCPAT-IIHQWMKEFQT 276 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhH-HHHHHHHhhcc------cccCceEEEccHH-HHHHHHHHHHH
Confidence 45889999977664 4666888899999999743 33344443321 1235799999964 55666666666
Q ss_pred hhccCCcceeeccCCCChHH--------HHHH-----hcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccC
Q 015712 239 ISHCARLDSSMENGGVSSKA--------LEDV-----SNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDR 305 (402)
Q Consensus 239 l~~~~~~~v~~~~gg~~~~~--------~~~~-----l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~ 305 (402)
+. ..++|.+++|..+... .... ...+.+|+|+|-..+.-. ...+.-...+|+|+||.|++-+.
T Consensus 277 w~--p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~--~d~l~~~~W~y~ILDEGH~IrNp 352 (923)
T KOG0387|consen 277 WW--PPFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ--GDDLLGILWDYVILDEGHRIRNP 352 (923)
T ss_pred hC--cceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc--CcccccccccEEEecCcccccCC
Confidence 54 3567777777655211 1111 123457899887654221 12233346789999999998443
Q ss_pred CCHHHHHHHHHHhhhhhcccCCCCceEEEEeecc-CchhHHH
Q 015712 306 GFGPEISKILNPLKDSALKSNGQGFQTILVTAAI-AEMLGEQ 346 (402)
Q Consensus 306 gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl-~~~v~~~ 346 (402)
-.++...+..++ -.+.|++|.|. -+.+.++
T Consensus 353 --ns~islackki~---------T~~RiILSGTPiQNnL~EL 383 (923)
T KOG0387|consen 353 --NSKISLACKKIR---------TVHRIILSGTPIQNNLTEL 383 (923)
T ss_pred --ccHHHHHHHhcc---------ccceEEeeCccccchHHHH
Confidence 445555566564 45667777775 4445544
No 156
>PRK10536 hypothetical protein; Provisional
Probab=98.01 E-value=0.00014 Score=68.33 Aligned_cols=145 Identities=15% Similarity=0.119 Sum_probs=84.9
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHH---------
Q 015712 159 MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESA--------- 229 (402)
Q Consensus 159 ~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa--------- 229 (402)
.++.--+..|...+.++.++..+++.|++|||||+..+...++.+... .-.+++|.-|+.+..
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~--------~~~kIiI~RP~v~~ge~LGfLPG~ 126 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHK--------DVDRIIVTRPVLQADEDLGFLPGD 126 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcC--------CeeEEEEeCCCCCchhhhCcCCCC
Confidence 355567889999999999888899999999999998777767666431 233566665664422
Q ss_pred --HHHHHHHHHhhccCCcceeeccCCCChHHHHHHhc-CCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCC
Q 015712 230 --DQGFHMAKFISHCARLDSSMENGGVSSKALEDVSN-APIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRG 306 (402)
Q Consensus 230 --~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~-~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~g 306 (402)
.-+..++..+...+.. +.|... ....+. ..-.|-|... .+++.+.+ . -.+||||||+.+
T Consensus 127 ~~eK~~p~~~pi~D~L~~----~~~~~~---~~~~~~~~~~~Iei~~l----~ymRGrtl--~-~~~vIvDEaqn~---- 188 (262)
T PRK10536 127 IAEKFAPYFRPVYDVLVR----RLGASF---MQYCLRPEIGKVEIAPF----AYMRGRTF--E-NAVVILDEAQNV---- 188 (262)
T ss_pred HHHHHHHHHHHHHHHHHH----HhChHH---HHHHHHhccCcEEEecH----HHhcCCcc--c-CCEEEEechhcC----
Confidence 2222223322221110 112111 111111 1122444432 33443333 2 379999999977
Q ss_pred CHHHHHHHHHHhhhhhcccCCCCceEEEEee
Q 015712 307 FGPEISKILNPLKDSALKSNGQGFQTILVTA 337 (402)
Q Consensus 307 f~~~i~~il~~l~~~~~~~~~~~~q~i~~SA 337 (402)
-..++..++.++. .+.++|++.-
T Consensus 189 ~~~~~k~~ltR~g--------~~sk~v~~GD 211 (262)
T PRK10536 189 TAAQMKMFLTRLG--------ENVTVIVNGD 211 (262)
T ss_pred CHHHHHHHHhhcC--------CCCEEEEeCC
Confidence 3578899998886 4667777654
No 157
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.94 E-value=3.8e-05 Score=76.14 Aligned_cols=108 Identities=15% Similarity=0.267 Sum_probs=68.0
Q ss_pred cEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHH
Q 015712 180 SVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259 (402)
Q Consensus 180 dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~ 259 (402)
-++|.|..|||||+.. +-++..+.. ...+..+++++++..|...+...+.....
T Consensus 3 v~~I~G~aGTGKTvla-~~l~~~l~~-------~~~~~~~~~l~~n~~l~~~l~~~l~~~~~------------------ 56 (352)
T PF09848_consen 3 VILITGGAGTGKTVLA-LNLAKELQN-------SEEGKKVLYLCGNHPLRNKLREQLAKKYN------------------ 56 (352)
T ss_pred EEEEEecCCcCHHHHH-HHHHHHhhc-------cccCCceEEEEecchHHHHHHHHHhhhcc------------------
Confidence 3789999999999864 444444411 12577899999999999887776655320
Q ss_pred HHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCC-------CHHHHHHHHHH
Q 015712 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRG-------FGPEISKILNP 317 (402)
Q Consensus 260 ~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~g-------f~~~i~~il~~ 317 (402)
.......+..+..+...+..........++|||||||++.+.+ ...++..++..
T Consensus 57 ----~~~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 57 ----PKLKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred ----cchhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 0001123334444443333223345778999999999998732 24566666664
No 158
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=97.93 E-value=5.9e-05 Score=79.04 Aligned_cols=163 Identities=16% Similarity=0.229 Sum_probs=100.0
Q ss_pred CcHHHHHHHHHHH----cCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHh
Q 015712 164 PSEIQCVGIPAVL----NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 239 (402)
Q Consensus 164 pt~iQ~~~i~~il----~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l 239 (402)
+-++|.-.+..+. .+-+.|+.-..|-|||.- +|+.+..|.+.. ....-|||||.--|- ++++.+
T Consensus 400 LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQ-vIaFlayLkq~g-------~~gpHLVVvPsSTle----NWlrEf 467 (941)
T KOG0389|consen 400 LKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQ-VIAFLAYLKQIG-------NPGPHLVVVPSSTLE----NWLREF 467 (941)
T ss_pred ccchhhhhHHHHHHHHHccccceehhhccCcchhH-HHHHHHHHHHcC-------CCCCcEEEecchhHH----HHHHHH
Confidence 5678888877643 456789999999999954 566666666532 233457888976654 455555
Q ss_pred hccC-CcceeeccCCCChHHHHHHh--c--CCccEEEeCchhhHHHhhc-CCCCCCCeeEEEEcCCCccccCCCHHHHHH
Q 015712 240 SHCA-RLDSSMENGGVSSKALEDVS--N--APIGMLIATPSEVLQHIED-RNVSCDDIRYVVLDEADTLFDRGFGPEISK 313 (402)
Q Consensus 240 ~~~~-~~~v~~~~gg~~~~~~~~~l--~--~~~~IlV~TP~~l~~~l~~-~~~~l~~l~~lVlDEad~~l~~gf~~~i~~ 313 (402)
.+.+ .++|-.+||......+.+.. . .+.+|||+|-.....--.. ..+.-.++.|+|+||+|.+=++. ..-...
T Consensus 468 ~kwCPsl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~-SeRy~~ 546 (941)
T KOG0389|consen 468 AKWCPSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRT-SERYKH 546 (941)
T ss_pred HHhCCceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccc-hHHHHH
Confidence 5444 57888888887655544322 1 2689999997654321111 12233568899999999764443 223333
Q ss_pred HHHHhhhhhcccCCCCceEEEEeec-cCchhHHHHHH
Q 015712 314 ILNPLKDSALKSNGQGFQTILVTAA-IAEMLGEQLSS 349 (402)
Q Consensus 314 il~~l~~~~~~~~~~~~q~i~~SAT-l~~~v~~~~~~ 349 (402)
++. ++ ..+.|+++.| +-+.+.++++.
T Consensus 547 LM~-I~---------An~RlLLTGTPLQNNL~ELiSL 573 (941)
T KOG0389|consen 547 LMS-IN---------ANFRLLLTGTPLQNNLKELISL 573 (941)
T ss_pred hcc-cc---------ccceEEeeCCcccccHHHHHHH
Confidence 332 11 2345566666 46666666544
No 159
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=97.90 E-value=3.7e-05 Score=71.97 Aligned_cols=87 Identities=11% Similarity=0.145 Sum_probs=68.8
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCC-ChHHHHHHhcC-CccEEEeCchhhHHHhhcCCCCCCC
Q 015712 213 KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGV-SSKALEDVSNA-PIGMLIATPSEVLQHIEDRNVSCDD 290 (402)
Q Consensus 213 ~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~-~~~~~~~~l~~-~~~IlV~TP~~l~~~l~~~~~~l~~ 290 (402)
....|.+||||.+---|..+.+.++.+.. -+..|+-++... ...++...+.. .++|.||||+||..++..+.+.+++
T Consensus 123 ~~gsP~~lvvs~SalRa~dl~R~l~~~~~-k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~ 201 (252)
T PF14617_consen 123 EKGSPHVLVVSSSALRAADLIRALRSFKG-KDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSN 201 (252)
T ss_pred CCCCCEEEEEcchHHHHHHHHHHHHhhcc-CCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCccc
Confidence 34679999999988888888887777631 134555555544 67778777774 7899999999999999999999999
Q ss_pred eeEEEEcCCC
Q 015712 291 IRYVVLDEAD 300 (402)
Q Consensus 291 l~~lVlDEad 300 (402)
+.+||||--|
T Consensus 202 l~~ivlD~s~ 211 (252)
T PF14617_consen 202 LKRIVLDWSY 211 (252)
T ss_pred CeEEEEcCCc
Confidence 9999999754
No 160
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.87 E-value=5.4e-05 Score=81.83 Aligned_cols=74 Identities=15% Similarity=0.111 Sum_probs=61.7
Q ss_pred CCCCCcHHHHHHHHHH----HcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHH
Q 015712 160 GLFVPSEIQCVGIPAV----LNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHM 235 (402)
Q Consensus 160 g~~~pt~iQ~~~i~~i----l~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~ 235 (402)
-|..++|.|.+.+..+ ..|.++++.||||+|||++.+.|++.++.... ..++++|++.|..-..|+.+.
T Consensus 7 Py~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~-------~~~kIiy~sRThsQl~q~i~E 79 (705)
T TIGR00604 7 PYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP-------EVRKIIYASRTHSQLEQATEE 79 (705)
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc-------ccccEEEEcccchHHHHHHHH
Confidence 3666799999887664 46889999999999999999999999876521 347999999999999999998
Q ss_pred HHHhh
Q 015712 236 AKFIS 240 (402)
Q Consensus 236 ~~~l~ 240 (402)
++.+.
T Consensus 80 lk~~~ 84 (705)
T TIGR00604 80 LRKLM 84 (705)
T ss_pred HHhhh
Confidence 88853
No 161
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.87 E-value=0.00015 Score=76.61 Aligned_cols=141 Identities=18% Similarity=0.167 Sum_probs=84.5
Q ss_pred cHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhccCC
Q 015712 165 SEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 244 (402)
Q Consensus 165 t~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~ 244 (402)
.++|+.|+...+.++-+++.|+.|||||.+. .-++..+.... .....++++++||..-|..+.+.+.......+
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v-~~ll~~l~~~~-----~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~ 227 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTV-AKLLAALIQLA-----DGERCRIRLAAPTGKAAARLTESLGKALRQLP 227 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHH-HHHHHHHHHhc-----CCCCcEEEEECCcHHHHHHHHHHHHhhhhccc
Confidence 5899999999999999999999999999764 22233332210 11245788999999988887776554322221
Q ss_pred cceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhc------CCCCCCCeeEEEEcCCCccccCCCHHHHHHHHHHh
Q 015712 245 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIED------RNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318 (402)
Q Consensus 245 ~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~------~~~~l~~l~~lVlDEad~~l~~gf~~~i~~il~~l 318 (402)
+. ... ......-..|-.+|+..... ...+.-.+++|||||+-++ | ...+..+++.+
T Consensus 228 ~~----------~~~----~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMv-d---~~lm~~ll~al 289 (615)
T PRK10875 228 LT----------DEQ----KKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMV-D---LPMMARLIDAL 289 (615)
T ss_pred cc----------hhh----hhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcc-c---HHHHHHHHHhc
Confidence 10 000 00001112344444332211 1112334689999999854 3 55677778877
Q ss_pred hhhhcccCCCCceEEEEee
Q 015712 319 KDSALKSNGQGFQTILVTA 337 (402)
Q Consensus 319 ~~~~~~~~~~~~q~i~~SA 337 (402)
+ ++.++|++.-
T Consensus 290 ~--------~~~rlIlvGD 300 (615)
T PRK10875 290 P--------PHARVIFLGD 300 (615)
T ss_pred c--------cCCEEEEecc
Confidence 6 4678888754
No 162
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.82 E-value=0.00028 Score=76.27 Aligned_cols=67 Identities=19% Similarity=0.153 Sum_probs=49.6
Q ss_pred HCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHH
Q 015712 158 KMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGF 233 (402)
Q Consensus 158 ~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~ 233 (402)
..|+ .+++-|+.|+..+..++-+++.|+.|||||.+. -.++..+... +....+++++||-.-|..+.
T Consensus 319 ~~~~-~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~-------~~~~~v~l~ApTg~AA~~L~ 385 (720)
T TIGR01448 319 KLRK-GLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEEL-------GGLLPVGLAAPTGRAAKRLG 385 (720)
T ss_pred hcCC-CCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHc-------CCCceEEEEeCchHHHHHHH
Confidence 3565 789999999999998889999999999999753 3444444331 01157888999988776543
No 163
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.80 E-value=0.00011 Score=75.68 Aligned_cols=75 Identities=15% Similarity=0.111 Sum_probs=60.7
Q ss_pred HHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHH
Q 015712 156 VEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHM 235 (402)
Q Consensus 156 l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~ 235 (402)
+...|+.++..-|..|+.+++...=.||+||.|+|||..-.--+++.+.. ....+||++|+.--+.|++..
T Consensus 403 ~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~---------~~~~VLvcApSNiAVDqLaeK 473 (935)
T KOG1802|consen 403 FSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ---------HAGPVLVCAPSNIAVDQLAEK 473 (935)
T ss_pred hcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHh---------cCCceEEEcccchhHHHHHHH
Confidence 34457777888999999999999999999999999999876656655554 466899999999888887776
Q ss_pred HHHh
Q 015712 236 AKFI 239 (402)
Q Consensus 236 ~~~l 239 (402)
+...
T Consensus 474 Ih~t 477 (935)
T KOG1802|consen 474 IHKT 477 (935)
T ss_pred HHhc
Confidence 6553
No 164
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.79 E-value=0.0005 Score=76.06 Aligned_cols=128 Identities=18% Similarity=0.155 Sum_probs=80.0
Q ss_pred HCCCCCCcHHHHHHHHHHHcCCc-EEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHH
Q 015712 158 KMGLFVPSEIQCVGIPAVLNGKS-VVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMA 236 (402)
Q Consensus 158 ~~g~~~pt~iQ~~~i~~il~g~d-vli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~ 236 (402)
..|+ .+++-|..++..++.+++ +++.|..|+|||.+ +-.+...+.. .|.+++.++||---|..+..
T Consensus 342 ~~g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~---------~G~~V~~~ApTGkAA~~L~e-- 408 (988)
T PRK13889 342 ARGL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEA---------AGYEVRGAALSGIAAENLEG-- 408 (988)
T ss_pred hcCC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHH---------cCCeEEEecCcHHHHHHHhh--
Confidence 3565 799999999999998765 78999999999986 3344444333 47789999999876655432
Q ss_pred HHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCCCHHHHHHHHH
Q 015712 237 KFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 316 (402)
Q Consensus 237 ~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~gf~~~i~~il~ 316 (402)
..++.. .|-.+++.-...+...+...++|||||+-++ + ...+..++.
T Consensus 409 -----~tGi~a------------------------~TI~sll~~~~~~~~~l~~~~vlIVDEASMv-~---~~~m~~LL~ 455 (988)
T PRK13889 409 -----GSGIAS------------------------RTIASLEHGWGQGRDLLTSRDVLVIDEAGMV-G---TRQLERVLS 455 (988)
T ss_pred -----ccCcch------------------------hhHHHHHhhhcccccccccCcEEEEECcccC-C---HHHHHHHHH
Confidence 122211 1222222111222334567789999999954 2 345566665
Q ss_pred HhhhhhcccCCCCceEEEEeec
Q 015712 317 PLKDSALKSNGQGFQTILVTAA 338 (402)
Q Consensus 317 ~l~~~~~~~~~~~~q~i~~SAT 338 (402)
.... .+.++|++.=+
T Consensus 456 ~a~~-------~garvVLVGD~ 470 (988)
T PRK13889 456 HAAD-------AGAKVVLVGDP 470 (988)
T ss_pred hhhh-------CCCEEEEECCH
Confidence 4432 35677776543
No 165
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.78 E-value=0.0004 Score=73.23 Aligned_cols=142 Identities=21% Similarity=0.219 Sum_probs=84.5
Q ss_pred cHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhccCC
Q 015712 165 SEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 244 (402)
Q Consensus 165 t~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~ 244 (402)
.++|+.|+..++.++-+++.|+.|||||... ..++..+..... ...+.++++++||..-|..+.+.+.......+
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v-~~ll~~l~~~~~----~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~ 221 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTV-ARLLLALVKQSP----KQGKLRIALAAPTGKAAARLAESLRKAVKNLA 221 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHH-HHHHHHHHHhcc----ccCCCcEEEECCcHHHHHHHHHHHHhhhcccc
Confidence 3799999999999999999999999999863 233333332110 00135799999999888876665544222111
Q ss_pred cceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhc------CCCCCCCeeEEEEcCCCccccCCCHHHHHHHHHHh
Q 015712 245 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIED------RNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318 (402)
Q Consensus 245 ~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~------~~~~l~~l~~lVlDEad~~l~~gf~~~i~~il~~l 318 (402)
.. ... .....+-..|-.+++..... ..-+.-.+++||||||-++ + ...+..+++.+
T Consensus 222 ~~----------~~~----~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMv-d---~~l~~~ll~al 283 (586)
T TIGR01447 222 AA----------EAL----IAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMV-D---LPLMAKLLKAL 283 (586)
T ss_pred cc----------hhh----hhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccC-C---HHHHHHHHHhc
Confidence 10 000 00011123444444433211 0112335789999999854 3 45677778877
Q ss_pred hhhhcccCCCCceEEEEee
Q 015712 319 KDSALKSNGQGFQTILVTA 337 (402)
Q Consensus 319 ~~~~~~~~~~~~q~i~~SA 337 (402)
+ .+.++|++.-
T Consensus 284 ~--------~~~rlIlvGD 294 (586)
T TIGR01447 284 P--------PNTKLILLGD 294 (586)
T ss_pred C--------CCCEEEEECC
Confidence 6 3678887754
No 166
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.78 E-value=8.8e-05 Score=79.29 Aligned_cols=130 Identities=15% Similarity=0.196 Sum_probs=100.0
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHH
Q 015712 159 MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 238 (402)
Q Consensus 159 ~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~ 238 (402)
.|. .|+.+|.-.--.+.. .-|+-..||-|||++..+|+.-..+. |..+.+++-...||..-..++..
T Consensus 77 lg~-~~~dVQliG~i~lh~--g~iaEM~TGEGKTL~atlp~ylnaL~----------gkgVhvVTvNdYLA~RDae~m~~ 143 (822)
T COG0653 77 LGM-RHFDVQLLGGIVLHL--GDIAEMRTGEGKTLVATLPAYLNALA----------GKGVHVVTVNDYLARRDAEWMGP 143 (822)
T ss_pred cCC-ChhhHHHhhhhhhcC--CceeeeecCCchHHHHHHHHHHHhcC----------CCCcEEeeehHHhhhhCHHHHHH
Confidence 365 677777665444444 46889999999999999998765553 66788899999999999999999
Q ss_pred hhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhh-HHHhhcC------CCCCCCeeEEEEcCCCccc
Q 015712 239 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV-LQHIEDR------NVSCDDIRYVVLDEADTLF 303 (402)
Q Consensus 239 l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l-~~~l~~~------~~~l~~l~~lVlDEad~~l 303 (402)
+..+.|+.+++...+.+..++...+. |||..+|...| .+.++.+ ......+.|.|+||+|.++
T Consensus 144 l~~~LGlsvG~~~~~m~~~ek~~aY~--~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSIL 213 (822)
T COG0653 144 LYEFLGLSVGVILAGMSPEEKRAAYA--CDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSIL 213 (822)
T ss_pred HHHHcCCceeeccCCCChHHHHHHHh--cCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhhee
Confidence 99999999999999998877766665 79999999876 2223221 1224468899999999764
No 167
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.75 E-value=5.2e-05 Score=76.81 Aligned_cols=185 Identities=8% Similarity=-0.069 Sum_probs=126.0
Q ss_pred HHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHH
Q 015712 153 IKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQG 232 (402)
Q Consensus 153 ~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi 232 (402)
...+..+--.....+|..+|..+.+|+++++.-.|.+||.++|.+.....+... .....+++.||.++++..
T Consensus 276 ~~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~--------~~s~~~~~~~~~~~~~~~ 347 (1034)
T KOG4150|consen 276 RSLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLC--------HATNSLLPSEMVEHLRNG 347 (1034)
T ss_pred HHHHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcC--------cccceecchhHHHHhhcc
Confidence 344555556677899999999999999999999999999999999988877654 345678899999998764
Q ss_pred HHHHHHhhc---cCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcC----CCCCCCeeEEEEcCCCccccC
Q 015712 233 FHMAKFISH---CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR----NVSCDDIRYVVLDEADTLFDR 305 (402)
Q Consensus 233 ~~~~~~l~~---~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~----~~~l~~l~~lVlDEad~~l~~ 305 (402)
.+.+..... ...-.++-.+.+.+........+.+.+++++.|......+--+ ...+-++.++++||+|.++.
T Consensus 348 ~~~~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~- 426 (1034)
T KOG4150|consen 348 SKGQVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLF- 426 (1034)
T ss_pred CCceEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeec-
Confidence 332211110 0111234455566655556666778999999998776554332 23344578899999997743
Q ss_pred CCHHHHHHHHHHhhhhhcc-cCCCCceEEEEeeccCchhHHH
Q 015712 306 GFGPEISKILNPLKDSALK-SNGQGFQTILVTAAIAEMLGEQ 346 (402)
Q Consensus 306 gf~~~i~~il~~l~~~~~~-~~~~~~q~i~~SATl~~~v~~~ 346 (402)
-|+..+...++.|.+.... -.+.+.|++-+|||+-+.++.+
T Consensus 427 ~~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~ 468 (1034)
T KOG4150|consen 427 PTKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLR 468 (1034)
T ss_pred chhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHH
Confidence 2555555555444332211 1235789999999999887755
No 168
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.71 E-value=0.00036 Score=74.38 Aligned_cols=66 Identities=17% Similarity=0.230 Sum_probs=51.5
Q ss_pred CCcHHHHHHHHHHHcC-CcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHH
Q 015712 163 VPSEIQCVGIPAVLNG-KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 238 (402)
Q Consensus 163 ~pt~iQ~~~i~~il~g-~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~ 238 (402)
.+.+.|..|+..++.. ..++|.||+|||||.... .++..+.. .+.++|+++||..-+.++...+..
T Consensus 157 ~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~-~ii~~~~~---------~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 157 NLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLV-ELIRQLVK---------RGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHH-HHHHHHHH---------cCCCEEEEcCcHHHHHHHHHHHHh
Confidence 4688999999998876 578999999999997643 34444433 366999999999988887776654
No 169
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.70 E-value=0.0012 Score=71.83 Aligned_cols=136 Identities=16% Similarity=0.181 Sum_probs=81.6
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC-CcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCch
Q 015712 148 LKAEMIKAVEKMGLFVPSEIQCVGIPAVLNG-KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTE 226 (402)
Q Consensus 148 l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g-~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~Ptr 226 (402)
+++..+...-..++ .+++-|..|+..++.+ +-+++.|+.|+|||... -.++..+.. .+..+++++||-
T Consensus 338 ~~~~~~~~~l~~~~-~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll-~~i~~~~~~---------~g~~V~~~ApTg 406 (744)
T TIGR02768 338 VSPPIVDAAIDQHY-RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTML-KAAREAWEA---------AGYRVIGAALSG 406 (744)
T ss_pred CCHHHHHHHHhccC-CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHH-HHHHHHHHh---------CCCeEEEEeCcH
Confidence 44444333333444 6899999999998874 56899999999999653 334443333 367899999998
Q ss_pred HHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCC
Q 015712 227 ESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRG 306 (402)
Q Consensus 227 eLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~g 306 (402)
--|..+.. .+++... |-.+++..+..+...+...++||||||-++ +
T Consensus 407 ~Aa~~L~~-------~~g~~a~------------------------Ti~~~~~~~~~~~~~~~~~~llIvDEasMv-~-- 452 (744)
T TIGR02768 407 KAAEGLQA-------ESGIESR------------------------TLASLEYAWANGRDLLSDKDVLVIDEAGMV-G-- 452 (744)
T ss_pred HHHHHHHh-------ccCCcee------------------------eHHHHHhhhccCcccCCCCcEEEEECcccC-C--
Confidence 76665432 1222211 212221111222233567899999999855 2
Q ss_pred CHHHHHHHHHHhhhhhcccCCCCceEEEEe
Q 015712 307 FGPEISKILNPLKDSALKSNGQGFQTILVT 336 (402)
Q Consensus 307 f~~~i~~il~~l~~~~~~~~~~~~q~i~~S 336 (402)
...+..++..... .+.++|++.
T Consensus 453 -~~~~~~Ll~~~~~-------~~~kliLVG 474 (744)
T TIGR02768 453 -SRQMARVLKEAEE-------AGAKVVLVG 474 (744)
T ss_pred -HHHHHHHHHHHHh-------cCCEEEEEC
Confidence 3445566654432 356777766
No 170
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=97.66 E-value=0.0003 Score=74.73 Aligned_cols=150 Identities=15% Similarity=0.160 Sum_probs=91.9
Q ss_pred HHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHH-HHhhccCCcceeec
Q 015712 172 IPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMA-KFISHCARLDSSME 250 (402)
Q Consensus 172 i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~-~~l~~~~~~~v~~~ 250 (402)
+.++..+.-+++.+.||+|||.-+.--+|+.+..+. .+....+.+--|+|-.+.-+.+.+ +.-+...+-.|
T Consensus 387 ~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns-----~g~~~na~v~qprrisaisiaerva~er~e~~g~tv--- 458 (1282)
T KOG0921|consen 387 LQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENS-----NGASFNAVVSQPRRISAISLAERVANERGEEVGETC--- 458 (1282)
T ss_pred HHHHhcCceeeEeecccccchhHHHHHHHHHHhhcc-----ccccccceeccccccchHHHHHHHHHhhHHhhcccc---
Confidence 444556667899999999999999999999888753 223445677778888777765543 22222111111
Q ss_pred cCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCCCHHHHHHHHHHhhhhhcccCCCCc
Q 015712 251 NGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGF 330 (402)
Q Consensus 251 ~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~ 330 (402)
| .+.......-+.--.|+.||-+-++.++.++ +..+.++|+||.|.. +-. .+-+..+++-+...+ .+.
T Consensus 459 -g-y~vRf~Sa~prpyg~i~fctvgvllr~~e~g---lrg~sh~i~deiher-dv~-~dfll~~lr~m~~ty-----~dl 526 (1282)
T KOG0921|consen 459 -G-YNVRFDSATPRPYGSIMFCTVGVLLRMMENG---LRGISHVIIDEIHER-DVD-TDFVLIVLREMISTY-----RDL 526 (1282)
T ss_pred -c-ccccccccccccccceeeeccchhhhhhhhc---ccccccccchhhhhh-ccc-hHHHHHHHHhhhccc-----hhh
Confidence 1 1111110011112358999999999998876 456789999999954 322 333444444443222 466
Q ss_pred eEEEEeeccCc
Q 015712 331 QTILVTAAIAE 341 (402)
Q Consensus 331 q~i~~SATl~~ 341 (402)
.++++|||+..
T Consensus 527 ~v~lmsatIdT 537 (1282)
T KOG0921|consen 527 RVVLMSATIDT 537 (1282)
T ss_pred hhhhhhcccch
Confidence 77777777753
No 171
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.61 E-value=0.00033 Score=71.84 Aligned_cols=63 Identities=16% Similarity=0.285 Sum_probs=50.6
Q ss_pred CCcHHHHHHHHHHHcCCc-EEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHH
Q 015712 163 VPSEIQCVGIPAVLNGKS-VVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHM 235 (402)
Q Consensus 163 ~pt~iQ~~~i~~il~g~d-vli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~ 235 (402)
.+.+-|..|+......++ .++.||+|+|||.....-|.+.+.+ +.++||.+||..-+.-+...
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~----------~k~VLVcaPSn~AVdNiver 248 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ----------KKRVLVCAPSNVAVDNIVER 248 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc----------CCeEEEEcCchHHHHHHHHH
Confidence 456789999999888765 6899999999999876666665553 67999999999877776664
No 172
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=97.60 E-value=0.00072 Score=74.09 Aligned_cols=166 Identities=14% Similarity=0.156 Sum_probs=98.9
Q ss_pred cHHHHHHHHHH--Hc--CCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhh
Q 015712 165 SEIQCVGIPAV--LN--GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 240 (402)
Q Consensus 165 t~iQ~~~i~~i--l~--g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~ 240 (402)
+.+|++.+..+ ++ +-+-|+|--.|-|||+--+--+......++.. ...-...-.|||||. .|+-.....+..+.
T Consensus 977 RkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~-~~e~~~~PSLIVCPs-TLtGHW~~E~~kf~ 1054 (1549)
T KOG0392|consen 977 RKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSE-SSEFNRLPSLIVCPS-TLTGHWKSEVKKFF 1054 (1549)
T ss_pred HHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhccc-chhhccCCeEEECCc-hhhhHHHHHHHHhc
Confidence 45788876543 33 44789999999999996533333333332110 001233448999995 56665555555554
Q ss_pred ccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCCCHHHHHHHHHHhhh
Q 015712 241 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 320 (402)
Q Consensus 241 ~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~~ 320 (402)
.+ +++..+.|.-..+...+.--++.+|+|++.+.+..-+.. +.-.+..|.|+||-|-| .+-...+......+.
T Consensus 1055 pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~--l~~~~wNYcVLDEGHVi--kN~ktkl~kavkqL~- 1127 (1549)
T KOG0392|consen 1055 PF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY--LIKIDWNYCVLDEGHVI--KNSKTKLTKAVKQLR- 1127 (1549)
T ss_pred ch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH--HHhcccceEEecCccee--cchHHHHHHHHHHHh-
Confidence 44 566666666554444443344579999998877533321 11134679999999977 333555666666665
Q ss_pred hhcccCCCCceEEEEeecc-CchhHHHH
Q 015712 321 SALKSNGQGFQTILVTAAI-AEMLGEQL 347 (402)
Q Consensus 321 ~~~~~~~~~~q~i~~SATl-~~~v~~~~ 347 (402)
.+++ +++|.|. -+++.++-
T Consensus 1128 -------a~hR-LILSGTPIQNnvleLW 1147 (1549)
T KOG0392|consen 1128 -------ANHR-LILSGTPIQNNVLELW 1147 (1549)
T ss_pred -------hcce-EEeeCCCcccCHHHHH
Confidence 2344 5556664 56666663
No 173
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=97.60 E-value=0.00021 Score=78.09 Aligned_cols=163 Identities=18% Similarity=0.236 Sum_probs=100.8
Q ss_pred CCCcHHHHHHHHHHH----cCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHH
Q 015712 162 FVPSEIQCVGIPAVL----NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK 237 (402)
Q Consensus 162 ~~pt~iQ~~~i~~il----~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~ 237 (402)
..++.+|...+..++ .+.++|+.-..|-|||+-- +..|..+..... ..|| .|||+|.-.+. .+-+
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqt-i~fl~~l~~~~~-----~~gp-flvvvplst~~----~W~~ 437 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQT-ITFLSYLFHSLQ-----IHGP-FLVVVPLSTIT----AWER 437 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHH-HHHHHHHHHhhh-----ccCC-eEEEeehhhhH----HHHH
Confidence 678899999988765 5789999999999999742 333444433221 1455 46667754433 2223
Q ss_pred HhhccCCcceeeccCCCChHHHHHHhc----C-----CccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCCCH
Q 015712 238 FISHCARLDSSMENGGVSSKALEDVSN----A-----PIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFG 308 (402)
Q Consensus 238 ~l~~~~~~~v~~~~gg~~~~~~~~~l~----~-----~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~gf~ 308 (402)
.+..-+++++++++|.......++.+. . ..++|++|-+.++.--. .+.--...+++|||||++=+. .
T Consensus 438 ef~~w~~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~--~L~~i~w~~~~vDeahrLkN~--~ 513 (1373)
T KOG0384|consen 438 EFETWTDMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKA--ELSKIPWRYLLVDEAHRLKND--E 513 (1373)
T ss_pred HHHHHhhhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHh--hhccCCcceeeecHHhhcCch--H
Confidence 333334788999999887766554432 2 36899999887755432 122234679999999998422 3
Q ss_pred HHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHH
Q 015712 309 PEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQL 347 (402)
Q Consensus 309 ~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~ 347 (402)
..+-..+..+.. +.++++..-.+-+.+.++.
T Consensus 514 ~~l~~~l~~f~~--------~~rllitgTPlQNsikEL~ 544 (1373)
T KOG0384|consen 514 SKLYESLNQFKM--------NHRLLITGTPLQNSLKELW 544 (1373)
T ss_pred HHHHHHHHHhcc--------cceeeecCCCccccHHHHH
Confidence 334444554442 3455544444566677664
No 174
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=97.60 E-value=0.00072 Score=67.80 Aligned_cols=151 Identities=15% Similarity=0.127 Sum_probs=87.0
Q ss_pred CCCCcHHHHHHHHHHH-cCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHh
Q 015712 161 LFVPSEIQCVGIPAVL-NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 239 (402)
Q Consensus 161 ~~~pt~iQ~~~i~~il-~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l 239 (402)
+..+.|+|.+.+...+ +|.-+++.-..|-|||+-. |.|..+... ..-.||+||.--+ ....+.+..+
T Consensus 196 vs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQA-laIA~yyra----------EwplliVcPAsvr-ftWa~al~r~ 263 (689)
T KOG1000|consen 196 VSRLLPFQREGVIFALERGGRILLADEMGLGKTIQA-LAIARYYRA----------EWPLLIVCPASVR-FTWAKALNRF 263 (689)
T ss_pred HHhhCchhhhhHHHHHhcCCeEEEecccccchHHHH-HHHHHHHhh----------cCcEEEEecHHHh-HHHHHHHHHh
Confidence 4567899999988655 6778999999999999864 444443332 2347889995432 1222222222
Q ss_pred -hccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCCCHHHHHHHHHHh
Q 015712 240 -SHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318 (402)
Q Consensus 240 -~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~gf~~~i~~il~~l 318 (402)
..... +.++.++.+... -+-....|.|.+-+.+..+-. .+.-...+.||+||.|++-+. --.-...++..+
T Consensus 264 lps~~p--i~vv~~~~D~~~---~~~t~~~v~ivSye~ls~l~~--~l~~~~~~vvI~DEsH~Lk~s-ktkr~Ka~~dll 335 (689)
T KOG1000|consen 264 LPSIHP--IFVVDKSSDPLP---DVCTSNTVAIVSYEQLSLLHD--ILKKEKYRVVIFDESHMLKDS-KTKRTKAATDLL 335 (689)
T ss_pred cccccc--eEEEecccCCcc---ccccCCeEEEEEHHHHHHHHH--HHhcccceEEEEechhhhhcc-chhhhhhhhhHH
Confidence 22222 334444433221 111223577777765543322 223345889999999976433 233355555555
Q ss_pred hhhhcccCCCCceEEEEeecc
Q 015712 319 KDSALKSNGQGFQTILVTAAI 339 (402)
Q Consensus 319 ~~~~~~~~~~~~q~i~~SATl 339 (402)
.. -..+|++|.|.
T Consensus 336 k~--------akhvILLSGTP 348 (689)
T KOG1000|consen 336 KV--------AKHVILLSGTP 348 (689)
T ss_pred HH--------hhheEEecCCc
Confidence 43 34789999985
No 175
>PF13245 AAA_19: Part of AAA domain
Probab=97.60 E-value=0.00036 Score=53.24 Aligned_cols=60 Identities=22% Similarity=0.323 Sum_probs=40.1
Q ss_pred HHHHHHcCCc-EEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHH
Q 015712 171 GIPAVLNGKS-VVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMA 236 (402)
Q Consensus 171 ~i~~il~g~d-vli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~ 236 (402)
++...+.+.. +++.||.|||||...+--+...+.... . .+.+++|++||+..+..+.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~-----~-~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARA-----D-PGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhc-----C-CCCeEEEECCCHHHHHHHHHHH
Confidence 3443333444 566999999999765444444442111 1 2678999999999999988776
No 176
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.56 E-value=0.00045 Score=73.26 Aligned_cols=146 Identities=12% Similarity=0.149 Sum_probs=78.3
Q ss_pred cEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhcc------CCcceeeccCC
Q 015712 180 SVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHC------ARLDSSMENGG 253 (402)
Q Consensus 180 dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~------~~~~v~~~~gg 253 (402)
++=|.+.||||||.+|+-.+++.=.. ..-.+-||+|||.+.-.-++...+....+ -+.+.-.+.-.
T Consensus 76 NiDI~METGTGKTy~YlrtmfeLhk~--------YG~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~ 147 (985)
T COG3587 76 NIDILMETGTGKTYTYLRTMFELHKK--------YGLFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYD 147 (985)
T ss_pred eeeEEEecCCCceeeHHHHHHHHHHH--------hCceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeec
Confidence 67888999999999997766553222 13457899999987654433333222111 12222222211
Q ss_pred CChHHHHHHhcCCccEEEeCchhhHHH------hhcCCCCCC--------------Ce-eEEEEcCCCccccCCCHHHHH
Q 015712 254 VSSKALEDVSNAPIGMLIATPSEVLQH------IEDRNVSCD--------------DI-RYVVLDEADTLFDRGFGPEIS 312 (402)
Q Consensus 254 ~~~~~~~~~l~~~~~IlV~TP~~l~~~------l~~~~~~l~--------------~l-~~lVlDEad~~l~~gf~~~i~ 312 (402)
.......-...+.+.|++.|-..+..- +........ .+ -.+||||-|+|.... ....
T Consensus 148 ~~~~~~~~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~rPIvIvDEPh~f~~~~--k~~~ 225 (985)
T COG3587 148 EDIEKFKFKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMRPIVIVDEPHRFLGDD--KTYG 225 (985)
T ss_pred hHHHHHhhccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcCCEEEecChhhcccch--HHHH
Confidence 222222223345677888876655322 111111111 11 378999999996431 1121
Q ss_pred HHHHHhhhhhcccCCCCceEEEEeeccCchhHH
Q 015712 313 KILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 345 (402)
Q Consensus 313 ~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~ 345 (402)
. +..+. +.-++=|+||+++....
T Consensus 226 ~-i~~l~---------pl~ilRfgATfkd~y~~ 248 (985)
T COG3587 226 A-IKQLN---------PLLILRFGATFKDEYNN 248 (985)
T ss_pred H-HHhhC---------ceEEEEecccchhhhcC
Confidence 2 22221 34566699999987663
No 177
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.56 E-value=0.0012 Score=60.87 Aligned_cols=152 Identities=16% Similarity=0.198 Sum_probs=94.3
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHc---CCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCC
Q 015712 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLN---GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHP 217 (402)
Q Consensus 141 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~---g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~ 217 (402)
.+|+-+..|.+++=-+. .++ -.++.|......+.+ |.|.+.+..+|.|||.+ ++|++..++.+ ...
T Consensus 3 ~~w~p~~~P~wLl~E~e-~~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAd--------g~~ 71 (229)
T PF12340_consen 3 RNWDPMEYPDWLLFEIE-SNI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALAD--------GSR 71 (229)
T ss_pred CCCCchhChHHHHHHHH-cCc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcC--------CCc
Confidence 34666666777664432 334 678999999888875 68999999999999976 58888888764 234
Q ss_pred eEEEEcCchHHHHHHHHHHHH-hhccCCcceee--ccCCCChHH----HH----HHhcCCccEEEeCchhhHHHhhc---
Q 015712 218 RAIVLCTTEESADQGFHMAKF-ISHCARLDSSM--ENGGVSSKA----LE----DVSNAPIGMLIATPSEVLQHIED--- 283 (402)
Q Consensus 218 ~~Lvl~PtreLa~Qi~~~~~~-l~~~~~~~v~~--~~gg~~~~~----~~----~~l~~~~~IlV~TP~~l~~~l~~--- 283 (402)
-+.+++| +.|..|.++.++. ++.-.+-++.. +........ .. ......-.|+|+||+.++.+.-.
T Consensus 72 LvrviVp-k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le 150 (229)
T PF12340_consen 72 LVRVIVP-KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLE 150 (229)
T ss_pred EEEEEcC-HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHH
Confidence 5666666 5699998888764 43333333322 222222111 11 11122346999999988765311
Q ss_pred ----CCC-----------CCCCeeEEEEcCCCcccc
Q 015712 284 ----RNV-----------SCDDIRYVVLDEADTLFD 304 (402)
Q Consensus 284 ----~~~-----------~l~~l~~lVlDEad~~l~ 304 (402)
+.. .+++...=|+||+|..+.
T Consensus 151 ~l~~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 151 RLQDGKPEEARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 110 123445568999998754
No 178
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.55 E-value=0.00071 Score=67.80 Aligned_cols=158 Identities=16% Similarity=0.162 Sum_probs=94.9
Q ss_pred CCcHHHHHHHHHHHcCC-----cEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHH
Q 015712 163 VPSEIQCVGIPAVLNGK-----SVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK 237 (402)
Q Consensus 163 ~pt~iQ~~~i~~il~g~-----dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~ 237 (402)
.+-|+|.+.+..+.... .-|+.-..|.|||.-.+.-++..+ .+...|||+|+.+|. |..+.+.
T Consensus 184 ~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~-----------~ra~tLVvaP~VAlm-QW~nEI~ 251 (791)
T KOG1002|consen 184 PLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEV-----------DRAPTLVVAPTVALM-QWKNEIE 251 (791)
T ss_pred cchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhcc-----------ccCCeeEEccHHHHH-HHHHHHH
Confidence 45689999887765433 256777899999976543333311 345599999998874 4444454
Q ss_pred HhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcC--C------C-----CCCC--eeEEEEcCCCcc
Q 015712 238 FISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR--N------V-----SCDD--IRYVVLDEADTL 302 (402)
Q Consensus 238 ~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~--~------~-----~l~~--l~~lVlDEad~~ 302 (402)
.... ..+++..++|........ .+ .++|++.+|...+-.-++.. + + .|.+ +-.||+||||.+
T Consensus 252 ~~T~-gslkv~~YhG~~R~~nik-el-~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~I 328 (791)
T KOG1002|consen 252 RHTS-GSLKVYIYHGAKRDKNIK-EL-MNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNI 328 (791)
T ss_pred Hhcc-CceEEEEEecccccCCHH-Hh-hcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhccc
Confidence 4443 245666666654433222 22 24899999998877666531 1 1 1333 346999999988
Q ss_pred ccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeecc-CchhHHH
Q 015712 303 FDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI-AEMLGEQ 346 (402)
Q Consensus 303 l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl-~~~v~~~ 346 (402)
=+.. ....+..-.|. -...+.+|.|. -+.+.++
T Consensus 329 K~R~--snTArAV~~L~---------tt~rw~LSGTPLQNrigEl 362 (791)
T KOG1002|consen 329 KDRQ--SNTARAVFALE---------TTYRWCLSGTPLQNRIGEL 362 (791)
T ss_pred cccc--ccHHHHHHhhH---------hhhhhhccCCcchhhHHHH
Confidence 5543 22222223332 23456778875 4456555
No 179
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=97.48 E-value=0.0022 Score=70.12 Aligned_cols=158 Identities=19% Similarity=0.246 Sum_probs=95.6
Q ss_pred cHHHHHHHHHHH----cCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhh
Q 015712 165 SEIQCVGIPAVL----NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 240 (402)
Q Consensus 165 t~iQ~~~i~~il----~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~ 240 (402)
+.+|...+..+. ++-|-|+.-..|-|||.- .|.++.++-..+. +-.--||||||--+.+=-. .++.+
T Consensus 617 ReYQkiGLdWLatLYeknlNGILADEmGLGKTIQ-tISllAhLACeeg------nWGPHLIVVpTsviLnWEM-ElKRw- 687 (1958)
T KOG0391|consen 617 REYQKIGLDWLATLYEKNLNGILADEMGLGKTIQ-TISLLAHLACEEG------NWGPHLIVVPTSVILNWEM-ELKRW- 687 (1958)
T ss_pred HHHHHhhHHHHHHHHHhcccceehhhhcccchhH-HHHHHHHHHhccc------CCCCceEEeechhhhhhhH-HHhhh-
Confidence 456777765532 345789999999999975 4666666655432 3334578889876654322 33444
Q ss_pred ccCCcceeeccCCCChHHHHH---HhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCCCHHHHHHHHHH
Q 015712 241 HCARLDSSMENGGVSSKALED---VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNP 317 (402)
Q Consensus 241 ~~~~~~v~~~~gg~~~~~~~~---~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~gf~~~i~~il~~ 317 (402)
+.++++..+||........+ .-.+..||.|++...+..-+. .+.-.+.+|+||||||.+ .+|..+--..+-.
T Consensus 688 -cPglKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~--AFkrkrWqyLvLDEaqnI--KnfksqrWQAlln 762 (1958)
T KOG0391|consen 688 -CPGLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLT--AFKRKRWQYLVLDEAQNI--KNFKSQRWQALLN 762 (1958)
T ss_pred -CCcceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHH--HHHhhccceeehhhhhhh--cchhHHHHHHHhc
Confidence 34789988998754332221 112235788888776665554 334467899999999998 5555443333333
Q ss_pred hhhhhcccCCCCceEEEEeecc-CchhHH
Q 015712 318 LKDSALKSNGQGFQTILVTAAI-AEMLGE 345 (402)
Q Consensus 318 l~~~~~~~~~~~~q~i~~SATl-~~~v~~ 345 (402)
++ ..|.++++.|. -+.+.+
T Consensus 763 fn---------sqrRLLLtgTPLqNslmE 782 (1958)
T KOG0391|consen 763 FN---------SQRRLLLTGTPLQNSLME 782 (1958)
T ss_pred cc---------hhheeeecCCchhhHHHH
Confidence 33 23566666663 444433
No 180
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.39 E-value=0.00054 Score=68.25 Aligned_cols=138 Identities=14% Similarity=0.087 Sum_probs=76.5
Q ss_pred CcHHHHHHHHHH------HcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHH-H-HH
Q 015712 164 PSEIQCVGIPAV------LNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQG-F-HM 235 (402)
Q Consensus 164 pt~iQ~~~i~~i------l~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi-~-~~ 235 (402)
+++=|+.++..+ ..+..+.+.|+-|+|||+. +-.+...... .+..+++++||---|..+ - ..
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l--~~~i~~~~~~--------~~~~~~~~a~tg~AA~~i~~G~T 71 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFL--IKAIIDYLRS--------RGKKVLVTAPTGIAAFNIPGGRT 71 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHH--HHHHHHHhcc--------ccceEEEecchHHHHHhccCCcc
Confidence 566788888777 6788999999999999865 3333333321 467899999997766554 1 11
Q ss_pred HHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCCCHHHHHHHH
Q 015712 236 AKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315 (402)
Q Consensus 236 ~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~gf~~~i~~il 315 (402)
+..+ .++.+. ... ... +.+.+. ......+..+++||+||+-+ +.......+...+
T Consensus 72 ~hs~---f~i~~~----~~~-----------~~~--~~~~~~----~~~~~~l~~~~~lIiDEism-~~~~~l~~i~~~l 126 (364)
T PF05970_consen 72 IHSF---FGIPIN----NNE-----------KSQ--CKISKN----SRLRERLRKADVLIIDEISM-VSADMLDAIDRRL 126 (364)
T ss_pred hHHh---cCcccc----ccc-----------ccc--cccccc----chhhhhhhhheeeecccccc-hhHHHHHHHHHhh
Confidence 1111 111110 000 000 011111 11122467899999999984 4455666777777
Q ss_pred HHhhhhhc-ccCCCCceEEEEe
Q 015712 316 NPLKDSAL-KSNGQGFQTILVT 336 (402)
Q Consensus 316 ~~l~~~~~-~~~~~~~q~i~~S 336 (402)
+.+..... ..-..+.++|++.
T Consensus 127 r~i~~~~~~~~pFGG~~vil~G 148 (364)
T PF05970_consen 127 RDIRKSKDSDKPFGGKQVILFG 148 (364)
T ss_pred hhhhcccchhhhcCcceEEeeh
Confidence 76654310 1112356666543
No 181
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.31 E-value=0.0059 Score=68.27 Aligned_cols=139 Identities=17% Similarity=0.139 Sum_probs=86.1
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHHHc-CCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCc
Q 015712 147 GLKAEMIKAVEKMGLFVPSEIQCVGIPAVLN-GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTT 225 (402)
Q Consensus 147 ~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~-g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~Pt 225 (402)
++++..+......++ .+++-|..++..+.. ++-++++|+-|+|||.+. -++...+.. .|.+++.++||
T Consensus 366 ~v~~~~l~a~~~~~~-~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l-~~~~~~~e~---------~G~~V~g~ApT 434 (1102)
T PRK13826 366 GVREAVLAATFARHA-RLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMM-KAAREAWEA---------AGYRVVGGALA 434 (1102)
T ss_pred CCCHHHHHHHHhcCC-CCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHH-HHHHHHHHH---------cCCeEEEEcCc
Confidence 455555555545555 799999999998864 456899999999999764 334444333 47789999999
Q ss_pred hHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccC
Q 015712 226 EESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDR 305 (402)
Q Consensus 226 reLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~ 305 (402)
-.-|..+.. ..|+....+ .+++.....+...+..-.+||||||-++ +
T Consensus 435 gkAA~~L~e-------~~Gi~a~TI------------------------as~ll~~~~~~~~l~~~~vlVIDEAsMv-~- 481 (1102)
T PRK13826 435 GKAAEGLEK-------EAGIQSRTL------------------------SSWELRWNQGRDQLDNKTVFVLDEAGMV-A- 481 (1102)
T ss_pred HHHHHHHHH-------hhCCCeeeH------------------------HHHHhhhccCccCCCCCcEEEEECcccC-C-
Confidence 776655432 223322111 1111111112233566779999999954 2
Q ss_pred CCHHHHHHHHHHhhhhhcccCCCCceEEEEeec
Q 015712 306 GFGPEISKILNPLKDSALKSNGQGFQTILVTAA 338 (402)
Q Consensus 306 gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SAT 338 (402)
..++..++..... .+.++|++.=+
T Consensus 482 --~~~m~~Ll~~~~~-------~garvVLVGD~ 505 (1102)
T PRK13826 482 --SRQMALFVEAVTR-------AGAKLVLVGDP 505 (1102)
T ss_pred --HHHHHHHHHHHHh-------cCCEEEEECCH
Confidence 4556667766643 35677776544
No 182
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.30 E-value=0.0015 Score=69.73 Aligned_cols=77 Identities=18% Similarity=0.183 Sum_probs=52.3
Q ss_pred CCcHHHHHHHHHHH----cCCcEEEEcCCCCChhhHhHHHHHHHHHhhccc---------C-------CC----------
Q 015712 163 VPSEIQCVGIPAVL----NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEAL---------L-------PM---------- 212 (402)
Q Consensus 163 ~pt~iQ~~~i~~il----~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~---------~-------~~---------- 212 (402)
.|++.|...+..++ ...+.++.+|||+|||++.+=..|.+....... . +.
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 68999998876655 457899999999999999876666554432200 0 00
Q ss_pred -C-----CCCCeEEEEcCchHHHHHHHHHHHHh
Q 015712 213 -K-----PMHPRAIVLCTTEESADQGFHMAKFI 239 (402)
Q Consensus 213 -~-----~~~~~~Lvl~PtreLa~Qi~~~~~~l 239 (402)
. -.-|+++|-+-|.....|+.+.++..
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT 133 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRT 133 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhc
Confidence 0 12456777777777777877777654
No 183
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.30 E-value=0.0039 Score=52.05 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=18.2
Q ss_pred CCcEEEEcCCCCChhhHhHHHHHHHH
Q 015712 178 GKSVVLSSGSGSGRTLAYLLPLVQML 203 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~~lpil~~l 203 (402)
++.+++.|++|+|||.. +--++..+
T Consensus 19 ~~~v~i~G~~G~GKT~l-~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTL-ARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHHh
Confidence 67899999999999964 33344333
No 184
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.29 E-value=0.0008 Score=64.76 Aligned_cols=70 Identities=20% Similarity=0.210 Sum_probs=52.2
Q ss_pred CcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhc
Q 015712 164 PSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 241 (402)
Q Consensus 164 pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~ 241 (402)
+++-|..++.. ....++|.|+.|||||.+.+-=++..+.... ....++|+|+.|+..|..+...+.....
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~------~~~~~Il~lTft~~aa~e~~~ri~~~l~ 70 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG------VPPERILVLTFTNAAAQEMRERIRELLE 70 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS------STGGGEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc------CChHHheecccCHHHHHHHHHHHHHhcC
Confidence 46778888887 6678999999999999987665555554421 2356899999999999999888877543
No 185
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.23 E-value=0.00085 Score=56.03 Aligned_cols=19 Identities=32% Similarity=0.485 Sum_probs=12.8
Q ss_pred cCCcEEEEcCCCCChhhHh
Q 015712 177 NGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~ 195 (402)
+++.+++.|++|+|||...
T Consensus 3 ~~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ----EEEEE-TTSSHHHHH
T ss_pred CCcccEEEcCCCCCHHHHH
Confidence 3567999999999999864
No 186
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.21 E-value=0.0052 Score=61.52 Aligned_cols=134 Identities=10% Similarity=0.090 Sum_probs=68.5
Q ss_pred CCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEE-cCc-hHHHHHHHHHHHHhhccCCcceeeccCCCC
Q 015712 178 GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVL-CTT-EESADQGFHMAKFISHCARLDSSMENGGVS 255 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl-~Pt-reLa~Qi~~~~~~l~~~~~~~v~~~~gg~~ 255 (402)
++.++++||||+|||.+..--+........ ..+..+.++ +-| |.-+.. .++.++...++.+..
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~------~~g~~V~lit~Dt~R~aa~e---QL~~~a~~lgvpv~~------ 238 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSD------DKSLNIKIITIDNYRIGAKK---QIQTYGDIMGIPVKA------ 238 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhc------cCCCeEEEEeccCccHHHHH---HHHHHhhcCCcceEe------
Confidence 356899999999999875433322221100 023344433 333 222222 244444444443321
Q ss_pred hHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEE
Q 015712 256 SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILV 335 (402)
Q Consensus 256 ~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~ 335 (402)
+.++..+...+.. +.+.++|+||++.++.. . ..++..+...+.... ...--++.+
T Consensus 239 ---------------~~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~-~-~~~l~el~~~l~~~~----~~~e~~LVl 293 (388)
T PRK12723 239 ---------------IESFKDLKEEITQ----SKDFDLVLVDTIGKSPK-D-FMKLAEMKELLNACG----RDAEFHLAV 293 (388)
T ss_pred ---------------eCcHHHHHHHHHH----hCCCCEEEEcCCCCCcc-C-HHHHHHHHHHHHhcC----CCCeEEEEE
Confidence 2244445444432 35688999999997642 1 223334433332211 112367889
Q ss_pred eeccCc-hhHHHHHHHh
Q 015712 336 TAAIAE-MLGEQLSSLM 351 (402)
Q Consensus 336 SATl~~-~v~~~~~~~l 351 (402)
|||... .+.+.+..|-
T Consensus 294 sat~~~~~~~~~~~~~~ 310 (388)
T PRK12723 294 SSTTKTSDVKEIFHQFS 310 (388)
T ss_pred cCCCCHHHHHHHHHHhc
Confidence 999874 4555555553
No 187
>PRK04296 thymidine kinase; Provisional
Probab=97.14 E-value=0.0029 Score=57.05 Aligned_cols=99 Identities=16% Similarity=0.275 Sum_probs=54.7
Q ss_pred CCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCc---hHHHHHHHHHHHHhhccCCcceeeccCCC
Q 015712 178 GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTT---EESADQGFHMAKFISHCARLDSSMENGGV 254 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~Pt---reLa~Qi~~~~~~l~~~~~~~v~~~~gg~ 254 (402)
|.=.++.|++|+|||...+ -++..+.. .+.+++|+-|. +....+ +....++...
T Consensus 2 g~i~litG~~GsGKTT~~l-~~~~~~~~---------~g~~v~i~k~~~d~~~~~~~-------i~~~lg~~~~------ 58 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELL-QRAYNYEE---------RGMKVLVFKPAIDDRYGEGK-------VVSRIGLSRE------ 58 (190)
T ss_pred cEEEEEECCCCCHHHHHHH-HHHHHHHH---------cCCeEEEEeccccccccCCc-------EecCCCCccc------
Confidence 3447889999999997543 33444433 36678888663 222111 1111121110
Q ss_pred ChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCCCHHHHHHHHHHhh
Q 015712 255 SSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (402)
Q Consensus 255 ~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~ 319 (402)
.+.+..+..+++.+.. .-.+.++|||||++.+ + .+++..+++.+.
T Consensus 59 -------------~~~~~~~~~~~~~~~~---~~~~~dvviIDEaq~l-~---~~~v~~l~~~l~ 103 (190)
T PRK04296 59 -------------AIPVSSDTDIFELIEE---EGEKIDCVLIDEAQFL-D---KEQVVQLAEVLD 103 (190)
T ss_pred -------------ceEeCChHHHHHHHHh---hCCCCCEEEEEccccC-C---HHHHHHHHHHHH
Confidence 0123445555555544 2356789999999754 1 345666777654
No 188
>PRK14974 cell division protein FtsY; Provisional
Probab=97.06 E-value=0.0092 Score=58.63 Aligned_cols=133 Identities=17% Similarity=0.155 Sum_probs=73.1
Q ss_pred CcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCc--h-HHHHHHHHHHHHhhccCCcceeeccCCCC
Q 015712 179 KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTT--E-ESADQGFHMAKFISHCARLDSSMENGGVS 255 (402)
Q Consensus 179 ~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~Pt--r-eLa~Qi~~~~~~l~~~~~~~v~~~~gg~~ 255 (402)
.-+++.|++|+|||....--+ ..+.. .+.+++++... | .-..|...... ..++.+.....+..
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA-~~l~~---------~g~~V~li~~Dt~R~~a~eqL~~~a~----~lgv~v~~~~~g~d 206 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLA-YYLKK---------NGFSVVIAAGDTFRAGAIEQLEEHAE----RLGVKVIKHKYGAD 206 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHH-HHHHH---------cCCeEEEecCCcCcHHHHHHHHHHHH----HcCCceecccCCCC
Confidence 358899999999998643332 33332 34566555432 2 23344433333 33444332221111
Q ss_pred hHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCcccc-CCCHHHHHHHHHHhhhhhcccCCCCceEEE
Q 015712 256 SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD-RGFGPEISKILNPLKDSALKSNGQGFQTIL 334 (402)
Q Consensus 256 ~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~-~gf~~~i~~il~~l~~~~~~~~~~~~q~i~ 334 (402)
... .+.+.+... ...+.++|+||.+.++-. ..+..++..+.+.+. ++.-+++
T Consensus 207 p~~-----------------v~~~ai~~~--~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~--------pd~~iLV 259 (336)
T PRK14974 207 PAA-----------------VAYDAIEHA--KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTK--------PDLVIFV 259 (336)
T ss_pred HHH-----------------HHHHHHHHH--HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhC--------CceEEEe
Confidence 110 011222211 113457999999997742 235666666665543 4567888
Q ss_pred EeeccCchhHHHHHHHhh
Q 015712 335 VTAAIAEMLGEQLSSLME 352 (402)
Q Consensus 335 ~SATl~~~v~~~~~~~l~ 352 (402)
++||...+....++.|..
T Consensus 260 l~a~~g~d~~~~a~~f~~ 277 (336)
T PRK14974 260 GDALAGNDAVEQAREFNE 277 (336)
T ss_pred eccccchhHHHHHHHHHh
Confidence 999988887777777765
No 189
>PRK08181 transposase; Validated
Probab=97.01 E-value=0.014 Score=55.69 Aligned_cols=47 Identities=15% Similarity=0.158 Sum_probs=29.6
Q ss_pred HHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHH
Q 015712 175 VLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQG 232 (402)
Q Consensus 175 il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi 232 (402)
+..++++++.||+|+|||... ..+...+.. .|..++|+ +..+|+.++
T Consensus 103 ~~~~~nlll~Gp~GtGKTHLa-~Aia~~a~~---------~g~~v~f~-~~~~L~~~l 149 (269)
T PRK08181 103 LAKGANLLLFGPPGGGKSHLA-AAIGLALIE---------NGWRVLFT-RTTDLVQKL 149 (269)
T ss_pred HhcCceEEEEecCCCcHHHHH-HHHHHHHHH---------cCCceeee-eHHHHHHHH
Confidence 346789999999999999643 233333333 34455555 445565554
No 190
>PRK08727 hypothetical protein; Validated
Probab=97.00 E-value=0.0074 Score=56.26 Aligned_cols=35 Identities=23% Similarity=0.226 Sum_probs=22.9
Q ss_pred CcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEc
Q 015712 179 KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLC 223 (402)
Q Consensus 179 ~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~ 223 (402)
..+++.|++|+|||... -.+...+.. .+.+++|+.
T Consensus 42 ~~l~l~G~~G~GKThL~-~a~~~~~~~---------~~~~~~y~~ 76 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLA-LALCAAAEQ---------AGRSSAYLP 76 (233)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHH---------cCCcEEEEe
Confidence 35999999999999643 233344433 355677764
No 191
>PHA02533 17 large terminase protein; Provisional
Probab=97.00 E-value=0.0099 Score=62.07 Aligned_cols=150 Identities=11% Similarity=0.012 Sum_probs=88.2
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhcc
Q 015712 163 VPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHC 242 (402)
Q Consensus 163 ~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~ 242 (402)
.+.|+|...+..+..++-.++..+-..|||.+.+..++..+... .+..+++++|++..|..+++.++.+...
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~--------~~~~v~i~A~~~~QA~~vF~~ik~~ie~ 130 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFN--------KDKNVGILAHKASMAAEVLDRTKQAIEL 130 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhC--------CCCEEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 57899999998876667677888889999998765554443321 3569999999999999998888765443
Q ss_pred CC--cceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCCCHHHHHHHHHHhhh
Q 015712 243 AR--LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 320 (402)
Q Consensus 243 ~~--~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~~ 320 (402)
.+ +........ ...-.+.+|..|.+.|... +...=.+..++|+||+|.+- .+...+..+...+..
T Consensus 131 ~P~l~~~~i~~~~----~~~I~l~NGS~I~~lss~~-------~t~rG~~~~~liiDE~a~~~--~~~e~~~ai~p~las 197 (534)
T PHA02533 131 LPDFLQPGIVEWN----KGSIELENGSKIGAYASSP-------DAVRGNSFAMIYIDECAFIP--NFIDFWLAIQPVISS 197 (534)
T ss_pred CHHHhhcceeecC----ccEEEeCCCCEEEEEeCCC-------CccCCCCCceEEEeccccCC--CHHHHHHHHHHHHHc
Confidence 22 111110000 0001124555565544321 11111246789999999763 233344444444432
Q ss_pred hhcccCCCCceEEEEeecc
Q 015712 321 SALKSNGQGFQTILVTAAI 339 (402)
Q Consensus 321 ~~~~~~~~~~q~i~~SATl 339 (402)
+...+++++|..-
T Consensus 198 ------g~~~r~iiiSTp~ 210 (534)
T PHA02533 198 ------GRSSKIIITSTPN 210 (534)
T ss_pred ------CCCceEEEEECCC
Confidence 1234666666654
No 192
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=96.96 E-value=0.0014 Score=66.61 Aligned_cols=105 Identities=17% Similarity=0.179 Sum_probs=71.6
Q ss_pred CCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChH
Q 015712 178 GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~ 257 (402)
.+=++-+|||.||||.-. ++++.. ....+|-.|.|-||..+++.+... |+.|-+++|.....
T Consensus 191 RkIi~H~GPTNSGKTy~A----Lqrl~~----------aksGvycGPLrLLA~EV~~r~na~----gipCdL~TGeE~~~ 252 (700)
T KOG0953|consen 191 RKIIMHVGPTNSGKTYRA----LQRLKS----------AKSGVYCGPLRLLAHEVYDRLNAL----GIPCDLLTGEERRF 252 (700)
T ss_pred heEEEEeCCCCCchhHHH----HHHHhh----------hccceecchHHHHHHHHHHHhhhc----CCCccccccceeee
Confidence 345788999999999654 555553 456899999999999999988876 56666777764322
Q ss_pred HHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCCCHHH
Q 015712 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPE 310 (402)
Q Consensus 258 ~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~gf~~~ 310 (402)
.... .+.++.+=||-+.+ .+ -...++.||||+.+|-|...+-.
T Consensus 253 ~~~~--~~~a~hvScTVEM~-------sv-~~~yeVAViDEIQmm~Dp~RGwA 295 (700)
T KOG0953|consen 253 VLDN--GNPAQHVSCTVEMV-------SV-NTPYEVAVIDEIQMMRDPSRGWA 295 (700)
T ss_pred cCCC--CCcccceEEEEEEe-------ec-CCceEEEEehhHHhhcCcccchH
Confidence 2111 12356677776643 11 13468899999999887654433
No 193
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=96.93 E-value=0.0034 Score=64.85 Aligned_cols=149 Identities=11% Similarity=0.083 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHc-----C----CcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHH
Q 015712 166 EIQCVGIPAVLN-----G----KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMA 236 (402)
Q Consensus 166 ~iQ~~~i~~il~-----g----~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~ 236 (402)
|+|...+..++. | +.+++.-+-|.|||.....-++-.+.-. ...+..+++++++++.|..++..+
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~------g~~~~~i~~~A~~~~QA~~~f~~~ 74 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLD------GEPGAEIYCAANTRDQAKIVFDEA 74 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcC------CccCceEEEEeCCHHHHHHHHHHH
Confidence 678877777662 2 2478888999999987654444444332 124789999999999999999988
Q ss_pred HHhhccCCcceeeccCCCChHHHHHHhc-CCccEEEeCchhhHHHhhc--CCCCCCCeeEEEEcCCCccccCCCHHHHHH
Q 015712 237 KFISHCARLDSSMENGGVSSKALEDVSN-APIGMLIATPSEVLQHIED--RNVSCDDIRYVVLDEADTLFDRGFGPEISK 313 (402)
Q Consensus 237 ~~l~~~~~~~v~~~~gg~~~~~~~~~l~-~~~~IlV~TP~~l~~~l~~--~~~~l~~l~~lVlDEad~~l~~gf~~~i~~ 313 (402)
..+........... +. .... ..-.|..-..+.++..+.. ...+=.+..++|+||+|.+-+.. .+..
T Consensus 75 ~~~i~~~~~l~~~~-~~-------~~~~~~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~~---~~~~ 143 (477)
T PF03354_consen 75 KKMIEASPELRKRK-KP-------KIIKSNKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDDE---LYDA 143 (477)
T ss_pred HHHHHhChhhccch-hh-------hhhhhhceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCHH---HHHH
Confidence 88765432111000 00 0000 0122333332333333322 22233357899999999875432 2333
Q ss_pred HHHHhhhhhcccCCCCceEEEEee
Q 015712 314 ILNPLKDSALKSNGQGFQTILVTA 337 (402)
Q Consensus 314 il~~l~~~~~~~~~~~~q~i~~SA 337 (402)
+..-+.. ..+++++.+|-
T Consensus 144 l~~g~~~------r~~pl~~~IST 161 (477)
T PF03354_consen 144 LESGMGA------RPNPLIIIIST 161 (477)
T ss_pred HHhhhcc------CCCceEEEEeC
Confidence 3332221 13667776654
No 194
>PRK06526 transposase; Provisional
Probab=96.82 E-value=0.012 Score=55.74 Aligned_cols=21 Identities=29% Similarity=0.382 Sum_probs=17.7
Q ss_pred HHcCCcEEEEcCCCCChhhHh
Q 015712 175 VLNGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 175 il~g~dvli~a~TGsGKTla~ 195 (402)
+..+.++++.||+|+|||...
T Consensus 95 i~~~~nlll~Gp~GtGKThLa 115 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLA 115 (254)
T ss_pred hhcCceEEEEeCCCCchHHHH
Confidence 346789999999999999754
No 195
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.79 E-value=0.0077 Score=58.79 Aligned_cols=64 Identities=22% Similarity=0.226 Sum_probs=47.9
Q ss_pred CCCCCCcHHHHHHHHHHHcCC--cEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHH
Q 015712 159 MGLFVPSEIQCVGIPAVLNGK--SVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESA 229 (402)
Q Consensus 159 ~g~~~pt~iQ~~~i~~il~g~--dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa 229 (402)
.|+.--...|..|+.+++... =|.+.+.-|||||+-.+-+.+.+....+ ...++||.=|+..+-
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~-------~y~KiiVtRp~vpvG 289 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERK-------RYRKIIVTRPTVPVG 289 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHh-------hhceEEEecCCcCcc
Confidence 477666677888899888643 3778899999999988888888777643 455777777776544
No 196
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=96.79 E-value=0.00073 Score=60.05 Aligned_cols=139 Identities=16% Similarity=0.224 Sum_probs=62.0
Q ss_pred EEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHH
Q 015712 182 VLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261 (402)
Q Consensus 182 li~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~ 261 (402)
|+.|+-|.|||.+..+.+...+.. ...+++|.+|+.+-+..+++.+..-....+++..... .......
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~---------~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~---~~~~~~~ 68 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQK---------GKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKK---RIGQIIK 68 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS--------------EEEE-SS--S-HHHHHCC-------------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHh---------cCceEEEecCCHHHHHHHHHHHHhhcccccccccccc---ccccccc
Confidence 578999999998876665543332 2358999999999998888766554443343320000 0000000
Q ss_pred HhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCc
Q 015712 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 341 (402)
Q Consensus 262 ~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~ 341 (402)
....+..|-+..|..+... ....++||||||=.+ -.+.+..++. ....++||.|+.-
T Consensus 69 ~~~~~~~i~f~~Pd~l~~~-------~~~~DlliVDEAAaI----p~p~L~~ll~------------~~~~vv~stTi~G 125 (177)
T PF05127_consen 69 LRFNKQRIEFVAPDELLAE-------KPQADLLIVDEAAAI----PLPLLKQLLR------------RFPRVVFSTTIHG 125 (177)
T ss_dssp ----CCC--B--HHHHCCT-----------SCEEECTGGGS-----HHHHHHHHC------------CSSEEEEEEEBSS
T ss_pred cccccceEEEECCHHHHhC-------cCCCCEEEEechhcC----CHHHHHHHHh------------hCCEEEEEeeccc
Confidence 1112345666666655322 124589999999866 3455555543 4457788888853
Q ss_pred ---hhHHHHHHHhhccc
Q 015712 342 ---MLGEQLSSLMECLE 355 (402)
Q Consensus 342 ---~v~~~~~~~l~~~~ 355 (402)
.-..+.-+|+..+.
T Consensus 126 YEGtGRgF~lkf~~~L~ 142 (177)
T PF05127_consen 126 YEGTGRGFSLKFLKQLK 142 (177)
T ss_dssp TTBB-HHHHHHHHCT--
T ss_pred cccCCceeeeehhhhcc
Confidence 23444445555543
No 197
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.77 E-value=0.022 Score=56.87 Aligned_cols=131 Identities=9% Similarity=0.187 Sum_probs=67.5
Q ss_pred CcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcC-c-hH-HHHHHHHHHHHhhccCCcceeeccCCCC
Q 015712 179 KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCT-T-EE-SADQGFHMAKFISHCARLDSSMENGGVS 255 (402)
Q Consensus 179 ~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~P-t-re-La~Qi~~~~~~l~~~~~~~v~~~~gg~~ 255 (402)
+.++++||||+|||.....-+.. +.. .+.++.++.- + |. -+.| ++.++...++.+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~-L~~---------~GkkVglI~aDt~RiaAvEQ----Lk~yae~lgipv-------- 299 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQ-FHG---------KKKTVGFITTDHSRIGTVQQ----LQDYVKTIGFEV-------- 299 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHH-HHH---------cCCcEEEEecCCcchHHHHH----HHHHhhhcCCcE--------
Confidence 46899999999999875443332 322 2444544432 3 21 2223 222222222221
Q ss_pred hHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEE
Q 015712 256 SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILV 335 (402)
Q Consensus 256 ~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~ 335 (402)
+++.+|..+.+.+..-.- ..+.++|+||-+-+.... ...+..+...+.... +..-++.+
T Consensus 300 -------------~v~~d~~~L~~aL~~lk~-~~~~DvVLIDTaGRs~kd--~~lm~EL~~~lk~~~-----PdevlLVL 358 (436)
T PRK11889 300 -------------IAVRDEAAMTRALTYFKE-EARVDYILIDTAGKNYRA--SETVEEMIETMGQVE-----PDYICLTL 358 (436)
T ss_pred -------------EecCCHHHHHHHHHHHHh-ccCCCEEEEeCccccCcC--HHHHHHHHHHHhhcC-----CCeEEEEE
Confidence 223467667666543111 124788999988765322 333444444433211 23345668
Q ss_pred eeccCc-hhHHHHHHHhh
Q 015712 336 TAAIAE-MLGEQLSSLME 352 (402)
Q Consensus 336 SATl~~-~v~~~~~~~l~ 352 (402)
|||... ++.+.+..|-.
T Consensus 359 sATtk~~d~~~i~~~F~~ 376 (436)
T PRK11889 359 SASMKSKDMIEIITNFKD 376 (436)
T ss_pred CCccChHHHHHHHHHhcC
Confidence 987654 55666666654
No 198
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.76 E-value=0.0063 Score=61.65 Aligned_cols=32 Identities=19% Similarity=0.282 Sum_probs=25.3
Q ss_pred CcHHHHHHHHHHHcCCcEEEEcCCCCChhhHh
Q 015712 164 PSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 164 pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~ 195 (402)
+-......+..+..++++++.|++|+|||...
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA 211 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVA 211 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHH
Confidence 44455556677778999999999999999754
No 199
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.76 E-value=0.011 Score=58.76 Aligned_cols=170 Identities=12% Similarity=0.151 Sum_probs=81.4
Q ss_pred cccccCCCCHHHHHHHHHC---C--CCCCc---HHHHHHH----HHH-------HcCCcEEEEcCCCCChhhHhHHHHHH
Q 015712 141 SSFQELGLKAEMIKAVEKM---G--LFVPS---EIQCVGI----PAV-------LNGKSVVLSSGSGSGRTLAYLLPLVQ 201 (402)
Q Consensus 141 ~~f~~l~l~~~l~~~l~~~---g--~~~pt---~iQ~~~i----~~i-------l~g~dvli~a~TGsGKTla~~lpil~ 201 (402)
..+...|+++.+.+.|-+. + ...+. .+....+ +.+ ..|..++++||||+|||....--+..
T Consensus 81 ~~L~~~g~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 81 KYLFAAGFSAQLVRMIVDNLPEGEGYDTLDAAADWAQSVLAANLPVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred HHHHHCCCCHHHHHHHHHhhhhhcccCCHHHHHHHHHHHHHhcchhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4567778888887766442 1 21221 2222222 111 23567999999999999876444433
Q ss_pred HHHhhcccCCCCCCC-CeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHH
Q 015712 202 MLRRDEALLPMKPMH-PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQH 280 (402)
Q Consensus 202 ~l~~~~~~~~~~~~~-~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~ 280 (402)
.+.. .+ .++.+++ +...-.--.+.++.++...++.+. .+.+++.+...
T Consensus 161 ~~~~---------~G~~~V~lit-~D~~R~ga~EqL~~~a~~~gv~~~---------------------~~~~~~~l~~~ 209 (374)
T PRK14722 161 CVMR---------FGASKVALLT-TDSYRIGGHEQLRIFGKILGVPVH---------------------AVKDGGDLQLA 209 (374)
T ss_pred HHHh---------cCCCeEEEEe-cccccccHHHHHHHHHHHcCCceE---------------------ecCCcccHHHH
Confidence 3322 12 2343333 222211111333444443344332 23344444443
Q ss_pred hhcCCCCCCCeeEEEEcCCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchh-HHHHHHHhh
Q 015712 281 IEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEML-GEQLSSLME 352 (402)
Q Consensus 281 l~~~~~~l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v-~~~~~~~l~ 352 (402)
+.. +.+.++|+||.+-+.- +...+...+..+... ......++++|||..... .+.+..|..
T Consensus 210 l~~----l~~~DlVLIDTaG~~~---~d~~l~e~La~L~~~----~~~~~~lLVLsAts~~~~l~evi~~f~~ 271 (374)
T PRK14722 210 LAE----LRNKHMVLIDTIGMSQ---RDRTVSDQIAMLHGA----DTPVQRLLLLNATSHGDTLNEVVQAYRS 271 (374)
T ss_pred HHH----hcCCCEEEEcCCCCCc---ccHHHHHHHHHHhcc----CCCCeEEEEecCccChHHHHHHHHHHHH
Confidence 332 3455778888876431 122233333333211 113446777888886544 445555543
No 200
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.76 E-value=0.0019 Score=61.39 Aligned_cols=50 Identities=22% Similarity=0.520 Sum_probs=37.8
Q ss_pred cccccccccCCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhh
Q 015712 137 AEVVSSFQELGLKAEMIKAVEK-MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRD 206 (402)
Q Consensus 137 ~~~~~~f~~l~l~~~l~~~l~~-~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~ 206 (402)
+..+.+|+++++|+-+.+.+.. .|. ++|.||||||||.. +..++.++.+.
T Consensus 102 p~~i~~~e~LglP~i~~~~~~~~~GL-------------------ILVTGpTGSGKSTT-lAamId~iN~~ 152 (353)
T COG2805 102 PSKIPTLEELGLPPIVRELAESPRGL-------------------ILVTGPTGSGKSTT-LAAMIDYINKH 152 (353)
T ss_pred CccCCCHHHcCCCHHHHHHHhCCCce-------------------EEEeCCCCCcHHHH-HHHHHHHHhcc
Confidence 4567789999999888874433 244 89999999999976 46777777663
No 201
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=96.75 E-value=0.053 Score=57.40 Aligned_cols=144 Identities=11% Similarity=0.091 Sum_probs=84.0
Q ss_pred cHHHHHHHHH---HHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhc
Q 015712 165 SEIQCVGIPA---VLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 241 (402)
Q Consensus 165 t~iQ~~~i~~---il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~ 241 (402)
.|.=.+-|.. ....+-.++.+|-|.|||.+..+.++..+.. .+.+++|.+|...-+.+++..+.....
T Consensus 171 ~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f---------~Gi~IlvTAH~~~ts~evF~rv~~~le 241 (752)
T PHA03333 171 SPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISF---------LEIDIVVQAQRKTMCLTLYNRVETVVH 241 (752)
T ss_pred ChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHh---------cCCeEEEECCChhhHHHHHHHHHHHHH
Confidence 4443333443 3455678999999999999876665544432 367899999999999998888777655
Q ss_pred cCCc--------ceeeccCCCChHHHHHHhcCCccEEEeCchhhH------HHh--hcCCCCCCCeeEEEEcCCCccccC
Q 015712 242 CARL--------DSSMENGGVSSKALEDVSNAPIGMLIATPSEVL------QHI--EDRNVSCDDIRYVVLDEADTLFDR 305 (402)
Q Consensus 242 ~~~~--------~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~------~~l--~~~~~~l~~l~~lVlDEad~~l~~ 305 (402)
..+. .+....||. -.|.+..|.... .+. ..+...-...++||+|||..+-
T Consensus 242 ~lg~~~~fp~~~~iv~vkgg~------------E~I~f~~p~gak~G~sti~F~Ars~~s~RG~~~DLLIVDEAAfI~-- 307 (752)
T PHA03333 242 AYQHKPWFPEEFKIVTLKGTD------------ENLEYISDPAAKEGKTTAHFLASSPNAARGQNPDLVIVDEAAFVN-- 307 (752)
T ss_pred HhccccccCCCceEEEeeCCe------------eEEEEecCcccccCcceeEEecccCCCcCCCCCCEEEEECcccCC--
Confidence 3221 111111211 112222221111 000 0112222356899999999773
Q ss_pred CCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccC
Q 015712 306 GFGPEISKILNPLKDSALKSNGQGFQTILVTAAIA 340 (402)
Q Consensus 306 gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~ 340 (402)
.+.+..|+..+.. .+..++++|.+-+
T Consensus 308 --~~~l~aIlP~l~~-------~~~k~IiISS~~~ 333 (752)
T PHA03333 308 --PGALLSVLPLMAV-------KGTKQIHISSPVD 333 (752)
T ss_pred --HHHHHHHHHHHcc-------CCCceEEEeCCCC
Confidence 3556666666642 3567888888774
No 202
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.75 E-value=0.025 Score=51.34 Aligned_cols=133 Identities=17% Similarity=0.173 Sum_probs=65.3
Q ss_pred EEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCc-hHHHHHHHHHHHHhhccCCcceeeccCCCChHHH
Q 015712 181 VVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTT-EESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259 (402)
Q Consensus 181 vli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~Pt-reLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~ 259 (402)
++++||||+|||.+..=-+.....+ ...-++|-+-| |.=|. +.++.++...++.+........
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~---------~~~v~lis~D~~R~ga~---eQL~~~a~~l~vp~~~~~~~~~---- 67 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLK---------GKKVALISADTYRIGAV---EQLKTYAEILGVPFYVARTESD---- 67 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT---------T--EEEEEESTSSTHHH---HHHHHHHHHHTEEEEESSTTSC----
T ss_pred EEEECCCCCchHhHHHHHHHHHhhc---------cccceeecCCCCCccHH---HHHHHHHHHhccccchhhcchh----
Confidence 6899999999998754333332222 12233444433 32222 3344444444555443322221
Q ss_pred HHHhcCCccEEEeCchhhH-HHhhcCCCCCCCeeEEEEcCCCcccc-CCCHHHHHHHHHHhhhhhcccCCCCceEEEEee
Q 015712 260 EDVSNAPIGMLIATPSEVL-QHIEDRNVSCDDIRYVVLDEADTLFD-RGFGPEISKILNPLKDSALKSNGQGFQTILVTA 337 (402)
Q Consensus 260 ~~~l~~~~~IlV~TP~~l~-~~l~~~~~~l~~l~~lVlDEad~~l~-~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SA 337 (402)
|..++ +.++. ...++.++|+||=+-+... .....++..++..+. +.--.+.+||
T Consensus 68 --------------~~~~~~~~l~~--~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~--------~~~~~LVlsa 123 (196)
T PF00448_consen 68 --------------PAEIAREALEK--FRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALN--------PDEVHLVLSA 123 (196)
T ss_dssp --------------HHHHHHHHHHH--HHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHS--------SSEEEEEEEG
T ss_pred --------------hHHHHHHHHHH--HhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcC--------CccceEEEec
Confidence 11111 12221 0113456777777654321 113445555555553 3456788999
Q ss_pred ccCchhHHHHHHHhhc
Q 015712 338 AIAEMLGEQLSSLMEC 353 (402)
Q Consensus 338 Tl~~~v~~~~~~~l~~ 353 (402)
|...+....+..|...
T Consensus 124 ~~~~~~~~~~~~~~~~ 139 (196)
T PF00448_consen 124 TMGQEDLEQALAFYEA 139 (196)
T ss_dssp GGGGHHHHHHHHHHHH
T ss_pred ccChHHHHHHHHHhhc
Confidence 9988766666666553
No 203
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=96.73 E-value=0.012 Score=63.51 Aligned_cols=129 Identities=15% Similarity=0.157 Sum_probs=76.7
Q ss_pred CCCCcHHHHHHHHHHHcCCc-EEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHh
Q 015712 161 LFVPSEIQCVGIPAVLNGKS-VVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 239 (402)
Q Consensus 161 ~~~pt~iQ~~~i~~il~g~d-vli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l 239 (402)
+..+..-|+.|+-.++..+| .+|.|-+|||||..... ++..|.. .|.++|+.+=|..-+.-+.-.+..+
T Consensus 667 ~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~-LIkiL~~---------~gkkVLLtsyThsAVDNILiKL~~~ 736 (1100)
T KOG1805|consen 667 LLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISL-LIKILVA---------LGKKVLLTSYTHSAVDNILIKLKGF 736 (1100)
T ss_pred HhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHH-HHHHHHH---------cCCeEEEEehhhHHHHHHHHHHhcc
Confidence 34677899999999888776 68889999999986433 2333332 4778888887776555444333332
Q ss_pred hccC---C----c----ceeeccCCCChHH--HHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccc
Q 015712 240 SHCA---R----L----DSSMENGGVSSKA--LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 303 (402)
Q Consensus 240 ~~~~---~----~----~v~~~~gg~~~~~--~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l 303 (402)
.... | + .-.+...+.+... .....-..+.||.||--.+.+.+. ..+.++|.|||||-++.
T Consensus 737 ~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf----~~R~FD~cIiDEASQI~ 809 (1100)
T KOG1805|consen 737 GIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLF----VNRQFDYCIIDEASQIL 809 (1100)
T ss_pred CcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhh----hccccCEEEEccccccc
Confidence 2110 0 0 0001111221111 111223457899999766654443 34568999999999874
No 204
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.73 E-value=0.035 Score=52.13 Aligned_cols=110 Identities=14% Similarity=0.180 Sum_probs=59.1
Q ss_pred CcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHH
Q 015712 179 KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258 (402)
Q Consensus 179 ~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~ 258 (402)
..+++.|++|+|||... ..+...+.. .+..++++ +..+|...+...+.. .+
T Consensus 100 ~~~~l~G~~GtGKThLa-~aia~~l~~---------~g~~v~~i-t~~~l~~~l~~~~~~-------------~~----- 150 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLA-AAICNELLL---------RGKSVLII-TVADIMSAMKDTFSN-------------SE----- 150 (244)
T ss_pred ceEEEECCCCCCHHHHH-HHHHHHHHh---------cCCeEEEE-EHHHHHHHHHHHHhh-------------cc-----
Confidence 47999999999999754 455555544 35566665 334444332221100 00
Q ss_pred HHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCCCHH-HHHHHHHHhhhhhcccCCCCceEEEEee
Q 015712 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGP-EISKILNPLKDSALKSNGQGFQTILVTA 337 (402)
Q Consensus 259 ~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~gf~~-~i~~il~~l~~~~~~~~~~~~q~i~~SA 337 (402)
.+...+++. +..+++|||||++......+.. .+..|+..-. .....+|+.|-
T Consensus 151 -------------~~~~~~l~~-------l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry-------~~~~~tiitSN 203 (244)
T PRK07952 151 -------------TSEEQLLND-------LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRS-------SSKRPTGMLTN 203 (244)
T ss_pred -------------ccHHHHHHH-------hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHH-------hCCCCEEEeCC
Confidence 122233332 3468899999999765333333 2334444321 12456777766
Q ss_pred ccCchhH
Q 015712 338 AIAEMLG 344 (402)
Q Consensus 338 Tl~~~v~ 344 (402)
--+.++.
T Consensus 204 l~~~~l~ 210 (244)
T PRK07952 204 SNMEEMT 210 (244)
T ss_pred CCHHHHH
Confidence 5444443
No 205
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=96.73 E-value=0.043 Score=57.66 Aligned_cols=153 Identities=19% Similarity=0.241 Sum_probs=94.2
Q ss_pred cHHHHHHHHHHH----cCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhh
Q 015712 165 SEIQCVGIPAVL----NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 240 (402)
Q Consensus 165 t~iQ~~~i~~il----~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~ 240 (402)
-.+|...+..+. +|-|-|+.-..|-|||.-. +.++.+|...... -|| -|||+|.--| ..+.+.+.
T Consensus 569 KEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQs-isvlAhLaE~~nI-----wGP-FLVVtpaStL----~NWaqEis 637 (1185)
T KOG0388|consen 569 KEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQS-ISVLAHLAETHNI-----WGP-FLVVTPASTL----HNWAQEIS 637 (1185)
T ss_pred HHHhhccHHHHHHHHHccccceehhhhccchhHHH-HHHHHHHHHhccC-----CCc-eEEeehHHHH----hHHHHHHH
Confidence 356666655443 5889999999999999764 6667777654321 244 5777886554 34445555
Q ss_pred ccC-CcceeeccCCCChHHHHHH---------hcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCCCHHH
Q 015712 241 HCA-RLDSSMENGGVSSKALEDV---------SNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPE 310 (402)
Q Consensus 241 ~~~-~~~v~~~~gg~~~~~~~~~---------l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~gf~~~ 310 (402)
+++ .++++-+.|+.......+. ...+.+|+|++-..+..--+ .+.--...|.|+|||..+=.. -..-
T Consensus 638 rFlP~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDek--y~qkvKWQYMILDEAQAIKSS-sS~R 714 (1185)
T KOG0388|consen 638 RFLPSFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEK--YLQKVKWQYMILDEAQAIKSS-SSSR 714 (1185)
T ss_pred HhCccceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechHH--HHHhhhhhheehhHHHHhhhh-hhhH
Confidence 544 5788888998876654443 23467999988765532111 111124579999999987433 3344
Q ss_pred HHHHHHHhhhhhcccCCCCceEEEEeeccCc
Q 015712 311 ISKILNPLKDSALKSNGQGFQTILVTAAIAE 341 (402)
Q Consensus 311 i~~il~~l~~~~~~~~~~~~q~i~~SATl~~ 341 (402)
...++..- .+-.++++.|.-.
T Consensus 715 WKtLLsF~----------cRNRLLLTGTPIQ 735 (1185)
T KOG0388|consen 715 WKTLLSFK----------CRNRLLLTGTPIQ 735 (1185)
T ss_pred HHHHhhhh----------ccceeeecCCccc
Confidence 45555432 2345677777543
No 206
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.68 E-value=0.0097 Score=56.49 Aligned_cols=64 Identities=16% Similarity=0.247 Sum_probs=36.0
Q ss_pred HHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEc
Q 015712 151 EMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLC 223 (402)
Q Consensus 151 ~l~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~ 223 (402)
.++++|...|.....+.-...+.=+..|.-+++.|++|+|||...+--+...+.. .+..++|++
T Consensus 3 ~~~~~~~~~~~~tg~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~---------~g~~vl~iS 66 (271)
T cd01122 3 EIREALSNEEVWWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQ---------HGVRVGTIS 66 (271)
T ss_pred hhhccccccCCCCCcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh---------cCceEEEEE
Confidence 4455555444433333222222334567789999999999997543333333322 256777776
No 207
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.67 E-value=0.014 Score=49.97 Aligned_cols=39 Identities=18% Similarity=0.181 Sum_probs=24.3
Q ss_pred EEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHH
Q 015712 181 VVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESA 229 (402)
Q Consensus 181 vli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa 229 (402)
+++.|++|+|||.....-+ ..+.. .+..++++.....+.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~-~~~~~---------~~~~v~~~~~e~~~~ 40 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLA-LNIAT---------KGGKVVYVDIEEEIE 40 (165)
T ss_pred eeEeCCCCCCHHHHHHHHH-HHHHh---------cCCEEEEEECCcchH
Confidence 6899999999997543332 22222 356677776654433
No 208
>PRK06893 DNA replication initiation factor; Validated
Probab=96.67 E-value=0.0058 Score=56.82 Aligned_cols=46 Identities=22% Similarity=0.401 Sum_probs=28.8
Q ss_pred CCeeEEEEcCCCccccCC-CHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCc
Q 015712 289 DDIRYVVLDEADTLFDRG-FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 341 (402)
Q Consensus 289 ~~l~~lVlDEad~~l~~g-f~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~ 341 (402)
.+.++|||||+|.+.... ....+..++..+.. .+.+++++|++.++
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~-------~~~~illits~~~p 136 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKE-------QGKTLLLISADCSP 136 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHH-------cCCcEEEEeCCCCh
Confidence 467899999999875332 23345555554432 24567788887654
No 209
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.66 E-value=0.01 Score=60.81 Aligned_cols=112 Identities=14% Similarity=0.163 Sum_probs=61.6
Q ss_pred CcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHH
Q 015712 179 KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258 (402)
Q Consensus 179 ~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~ 258 (402)
..+++.|++|+|||.. +-.+...+.... .+.+++++.. .++...+...+..-.
T Consensus 142 npl~i~G~~G~GKTHL-l~Ai~~~l~~~~-------~~~~v~yv~~-~~f~~~~~~~l~~~~------------------ 194 (450)
T PRK14087 142 NPLFIYGESGMGKTHL-LKAAKNYIESNF-------SDLKVSYMSG-DEFARKAVDILQKTH------------------ 194 (450)
T ss_pred CceEEECCCCCcHHHH-HHHHHHHHHHhC-------CCCeEEEEEH-HHHHHHHHHHHHHhh------------------
Confidence 3489999999999953 344455444321 3556666654 555555443332100
Q ss_pred HHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCC-CHHHHHHHHHHhhhhhcccCCCCceEEEEee
Q 015712 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRG-FGPEISKILNPLKDSALKSNGQGFQTILVTA 337 (402)
Q Consensus 259 ~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~g-f~~~i~~il~~l~~~~~~~~~~~~q~i~~SA 337 (402)
+.+..+.. .+.++++|||||+|.+.... ..+.+..++..+.. .+.|+|+.|-
T Consensus 195 ----------------~~~~~~~~----~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~-------~~k~iIltsd 247 (450)
T PRK14087 195 ----------------KEIEQFKN----EICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIE-------NDKQLFFSSD 247 (450)
T ss_pred ----------------hHHHHHHH----HhccCCEEEEeccccccCCHHHHHHHHHHHHHHHH-------cCCcEEEECC
Confidence 11111111 13467899999999774322 34455566665543 2457776666
Q ss_pred ccCchhH
Q 015712 338 AIAEMLG 344 (402)
Q Consensus 338 Tl~~~v~ 344 (402)
..|..+.
T Consensus 248 ~~P~~l~ 254 (450)
T PRK14087 248 KSPELLN 254 (450)
T ss_pred CCHHHHh
Confidence 6555543
No 210
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.64 E-value=0.0053 Score=50.64 Aligned_cols=18 Identities=28% Similarity=0.530 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCCChhhHh
Q 015712 178 GKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~ 195 (402)
+..+++.||+|+|||...
T Consensus 2 ~~~~~l~G~~G~GKTtl~ 19 (148)
T smart00382 2 GEVILIVGPPGSGKTTLA 19 (148)
T ss_pred CCEEEEECCCCCcHHHHH
Confidence 567999999999999764
No 211
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.63 E-value=0.0097 Score=54.95 Aligned_cols=110 Identities=19% Similarity=0.216 Sum_probs=62.9
Q ss_pred cEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHH
Q 015712 180 SVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259 (402)
Q Consensus 180 dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~ 259 (402)
-+++.|++|+|||- .+-.+...+.+.. .+.+++|+.. .+....+...++.
T Consensus 36 ~l~l~G~~G~GKTH-LL~Ai~~~~~~~~-------~~~~v~y~~~-~~f~~~~~~~~~~--------------------- 85 (219)
T PF00308_consen 36 PLFLYGPSGLGKTH-LLQAIANEAQKQH-------PGKRVVYLSA-EEFIREFADALRD--------------------- 85 (219)
T ss_dssp EEEEEESTTSSHHH-HHHHHHHHHHHHC-------TTS-EEEEEH-HHHHHHHHHHHHT---------------------
T ss_pred ceEEECCCCCCHHH-HHHHHHHHHHhcc-------ccccceeecH-HHHHHHHHHHHHc---------------------
Confidence 38999999999997 4455555555421 3556777643 2333332221111
Q ss_pred HHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCC-CHHHHHHHHHHhhhhhcccCCCCceEEEEeec
Q 015712 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRG-FGPEISKILNPLKDSALKSNGQGFQTILVTAA 338 (402)
Q Consensus 260 ~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~g-f~~~i~~il~~l~~~~~~~~~~~~q~i~~SAT 338 (402)
.....+.+. +...++||||++|.+.+.. ....+-.++..+.. .+.|+|+.|..
T Consensus 86 ------------~~~~~~~~~-------~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~-------~~k~li~ts~~ 139 (219)
T PF00308_consen 86 ------------GEIEEFKDR-------LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIE-------SGKQLILTSDR 139 (219)
T ss_dssp ------------TSHHHHHHH-------HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHH-------TTSEEEEEESS
T ss_pred ------------ccchhhhhh-------hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHh-------hCCeEEEEeCC
Confidence 111223222 2467899999999874331 34455556665543 36688888878
Q ss_pred cCchhHH
Q 015712 339 IAEMLGE 345 (402)
Q Consensus 339 l~~~v~~ 345 (402)
.|..+..
T Consensus 140 ~P~~l~~ 146 (219)
T PF00308_consen 140 PPSELSG 146 (219)
T ss_dssp -TTTTTT
T ss_pred CCccccc
Confidence 8776553
No 212
>PRK06921 hypothetical protein; Provisional
Probab=96.55 E-value=0.05 Score=51.79 Aligned_cols=45 Identities=20% Similarity=0.169 Sum_probs=28.5
Q ss_pred cCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHH
Q 015712 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQ 231 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Q 231 (402)
.+.++++.|++|+|||... ..+...+... .+..++++. ..++..+
T Consensus 116 ~~~~l~l~G~~G~GKThLa-~aia~~l~~~--------~g~~v~y~~-~~~l~~~ 160 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLL-TAAANELMRK--------KGVPVLYFP-FVEGFGD 160 (266)
T ss_pred CCCeEEEECCCCCcHHHHH-HHHHHHHhhh--------cCceEEEEE-HHHHHHH
Confidence 3678999999999999643 4455555431 155666665 3444444
No 213
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.54 E-value=0.021 Score=58.34 Aligned_cols=56 Identities=13% Similarity=0.276 Sum_probs=33.9
Q ss_pred CCeeEEEEcCCCccccCC-CHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHh
Q 015712 289 DDIRYVVLDEADTLFDRG-FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLM 351 (402)
Q Consensus 289 ~~l~~lVlDEad~~l~~g-f~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l 351 (402)
..+++|+|||+|.+.... ....+..++..+.. .+.|+|+.|.+.|..+..+..++.
T Consensus 201 ~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~-------~~k~IIlts~~~p~~l~~l~~rL~ 257 (445)
T PRK12422 201 RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHT-------EGKLIVISSTCAPQDLKAMEERLI 257 (445)
T ss_pred ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHH-------CCCcEEEecCCCHHHHhhhHHHHH
Confidence 357899999999875432 34455555554432 245777776666666554433333
No 214
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.53 E-value=0.025 Score=55.45 Aligned_cols=45 Identities=18% Similarity=0.213 Sum_probs=29.5
Q ss_pred cCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHH
Q 015712 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQG 232 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi 232 (402)
.+.++++.|+||+|||.. +..+...+.. .+..|+++ +..+|..++
T Consensus 182 ~~~~Lll~G~~GtGKThL-a~aIa~~l~~---------~g~~V~y~-t~~~l~~~l 226 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFL-SNCIAKELLD---------RGKSVIYR-TADELIEIL 226 (329)
T ss_pred cCCcEEEECCCCCcHHHH-HHHHHHHHHH---------CCCeEEEE-EHHHHHHHH
Confidence 457899999999999974 3455555554 35566665 445555543
No 215
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=96.51 E-value=0.022 Score=60.91 Aligned_cols=150 Identities=19% Similarity=0.236 Sum_probs=91.5
Q ss_pred HHHCCCCCCcHHHHHHHHHHHcCC--cEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHH
Q 015712 156 VEKMGLFVPSEIQCVGIPAVLNGK--SVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGF 233 (402)
Q Consensus 156 l~~~g~~~pt~iQ~~~i~~il~g~--dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~ 233 (402)
+.....+.+..-|.+.+..++.++ -+++.|.-|-|||.+.-|.+....... ...+++|.+|+.+-++.++
T Consensus 207 l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~--------~~~~iiVTAP~~~nv~~Lf 278 (758)
T COG1444 207 LYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLA--------GSVRIIVTAPTPANVQTLF 278 (758)
T ss_pred HhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhc--------CCceEEEeCCCHHHHHHHH
Confidence 555555555555555666666543 589999999999999888774333221 1468999999999999888
Q ss_pred HHHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCCCHHHHHH
Q 015712 234 HMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISK 313 (402)
Q Consensus 234 ~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~gf~~~i~~ 313 (402)
..+..-....|++-......... ..........|=+..|.... .. -++||||||=.+ -.+-+..
T Consensus 279 ~fa~~~l~~lg~~~~v~~d~~g~--~~~~~~~~~~i~y~~P~~a~---------~~-~DllvVDEAAaI----plplL~~ 342 (758)
T COG1444 279 EFAGKGLEFLGYKRKVAPDALGE--IREVSGDGFRIEYVPPDDAQ---------EE-ADLLVVDEAAAI----PLPLLHK 342 (758)
T ss_pred HHHHHhHHHhCCccccccccccc--eeeecCCceeEEeeCcchhc---------cc-CCEEEEehhhcC----ChHHHHH
Confidence 87766555555442222111000 00001112234455554431 11 679999999866 3555666
Q ss_pred HHHHhhhhhcccCCCCceEEEEeeccCc
Q 015712 314 ILNPLKDSALKSNGQGFQTILVTAAIAE 341 (402)
Q Consensus 314 il~~l~~~~~~~~~~~~q~i~~SATl~~ 341 (402)
+++. .+.++||.|+..
T Consensus 343 l~~~------------~~rv~~sTTIhG 358 (758)
T COG1444 343 LLRR------------FPRVLFSTTIHG 358 (758)
T ss_pred HHhh------------cCceEEEeeecc
Confidence 6653 368889999853
No 216
>PRK08116 hypothetical protein; Validated
Probab=96.51 E-value=0.068 Score=50.94 Aligned_cols=43 Identities=14% Similarity=0.114 Sum_probs=27.4
Q ss_pred CcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHH
Q 015712 179 KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQG 232 (402)
Q Consensus 179 ~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi 232 (402)
..+++.|++|+|||... ..+...+.. .+..++++ +..++...+
T Consensus 115 ~gl~l~G~~GtGKThLa-~aia~~l~~---------~~~~v~~~-~~~~ll~~i 157 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLA-ACIANELIE---------KGVPVIFV-NFPQLLNRI 157 (268)
T ss_pred ceEEEECCCCCCHHHHH-HHHHHHHHH---------cCCeEEEE-EHHHHHHHH
Confidence 34999999999999754 456666654 24445544 445555443
No 217
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=96.47 E-value=0.037 Score=58.38 Aligned_cols=134 Identities=12% Similarity=0.106 Sum_probs=85.8
Q ss_pred CcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhccC--CcceeeccCCCCh
Q 015712 179 KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA--RLDSSMENGGVSS 256 (402)
Q Consensus 179 ~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~--~~~v~~~~gg~~~ 256 (402)
+-.++..|--.|||+... +++..+... -.|.+++|++|.+..+..+++.+..+.... +-.+..+.| ...
T Consensus 255 k~tVflVPRR~GKTwivv-~iI~~ll~s-------~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~I 325 (738)
T PHA03368 255 RATVFLVPRRHGKTWFLV-PLIALALAT-------FRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-ETI 325 (738)
T ss_pred cceEEEecccCCchhhHH-HHHHHHHHh-------CCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-cEE
Confidence 458999999999998765 777766542 148899999999999999999887764421 111112222 110
Q ss_pred HHHHHHhcCC--ccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEE
Q 015712 257 KALEDVSNAP--IGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTIL 334 (402)
Q Consensus 257 ~~~~~~l~~~--~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~ 334 (402)
.-...+| ..|.+++. -..+.+.=..++++|||||+.+- .+.+..|+..+.. .++++|.
T Consensus 326 ---~i~f~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk----~~al~~ilp~l~~-------~n~k~I~ 385 (738)
T PHA03368 326 ---SFSFPDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIR----PDAVQTIMGFLNQ-------TNCKIIF 385 (738)
T ss_pred ---EEEecCCCccEEEEEec------cCCCCccCCcccEEEEechhhCC----HHHHHHHHHHHhc-------cCccEEE
Confidence 0011112 13444422 11223334578999999999773 4667777766653 4899999
Q ss_pred EeeccCc
Q 015712 335 VTAAIAE 341 (402)
Q Consensus 335 ~SATl~~ 341 (402)
+|.|-+.
T Consensus 386 ISS~Ns~ 392 (738)
T PHA03368 386 VSSTNTG 392 (738)
T ss_pred EecCCCC
Confidence 9999765
No 218
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.46 E-value=0.028 Score=65.04 Aligned_cols=63 Identities=21% Similarity=0.274 Sum_probs=46.8
Q ss_pred CCcHHHHHHHHHHHcC--CcEEEEcCCCCChhhHh--HHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHH
Q 015712 163 VPSEIQCVGIPAVLNG--KSVVLSSGSGSGRTLAY--LLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGF 233 (402)
Q Consensus 163 ~pt~iQ~~~i~~il~g--~dvli~a~TGsGKTla~--~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~ 233 (402)
.+++-|..|+..++.+ +-++++|..|+|||.+. ++-++..+.. ..+..++.++||-.-+..+.
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e--------~~g~~V~glAPTgkAa~~L~ 901 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPE--------SERPRVVGLGPTHRAVGEMR 901 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhh--------ccCceEEEEechHHHHHHHH
Confidence 6899999999999865 66999999999999874 2333333222 13667889999988776653
No 219
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=96.44 E-value=0.025 Score=56.92 Aligned_cols=149 Identities=16% Similarity=0.202 Sum_probs=85.5
Q ss_pred cEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchH-HHHHHHHHHHHhhccCCcceeeccCCCChHH
Q 015712 180 SVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEE-SADQGFHMAKFISHCARLDSSMENGGVSSKA 258 (402)
Q Consensus 180 dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~Ptre-La~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~ 258 (402)
-.++.|..|||||.+.++-++..+... ..+.+++++-+|.. |..-++..+.......++....-....+.
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~-------~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~-- 73 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAIN-------KKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM-- 73 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhc-------CCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc--
Confidence 368899999999999988888877763 13578999999987 55556776665555444432111111110
Q ss_pred HHHHhcCCccEEEeCc-hhhHHHhhcCCCCCCCeeEEEEcCCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEee
Q 015712 259 LEDVSNAPIGMLIATP-SEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTA 337 (402)
Q Consensus 259 ~~~~l~~~~~IlV~TP-~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SA 337 (402)
.......|..|++..- +...+ +. ....+.++.+|||..+- ...+..++..+... ...+.+++|.
T Consensus 74 ~i~~~~~g~~i~f~g~~d~~~~-ik----~~~~~~~~~idEa~~~~----~~~~~~l~~rlr~~------~~~~~i~~t~ 138 (396)
T TIGR01547 74 EIKILNTGKKFIFKGLNDKPNK-LK----SGAGIAIIWFEEASQLT----FEDIKELIPRLRET------GGKKFIIFSS 138 (396)
T ss_pred EEEecCCCeEEEeecccCChhH-hh----CcceeeeehhhhhhhcC----HHHHHHHHHHhhcc------CCccEEEEEc
Confidence 0001112445665443 22211 11 12336899999999872 34566666655321 1222577888
Q ss_pred ccCchhHHHHHHHhh
Q 015712 338 AIAEMLGEQLSSLME 352 (402)
Q Consensus 338 Tl~~~v~~~~~~~l~ 352 (402)
+......-+...|+.
T Consensus 139 NP~~~~~w~~~~f~~ 153 (396)
T TIGR01547 139 NPESPLHWVKKRFIE 153 (396)
T ss_pred CcCCCccHHHHHHHh
Confidence 876543444455554
No 220
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.39 E-value=0.018 Score=51.07 Aligned_cols=48 Identities=27% Similarity=0.286 Sum_probs=31.8
Q ss_pred EEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHh
Q 015712 181 VVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 239 (402)
Q Consensus 181 vli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l 239 (402)
+++.|++|+|||...+--+...+ + .+..++|++. .+-..++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~-~---------~g~~v~~~s~-e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL-A---------RGEPGLYVTL-EESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH-H---------CCCcEEEEEC-CCCHHHHHHHHHHc
Confidence 68999999999975443333333 2 3667887754 45666766666655
No 221
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.37 E-value=0.011 Score=56.35 Aligned_cols=55 Identities=15% Similarity=0.375 Sum_probs=34.8
Q ss_pred CCCCCCeeEEEEcCCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHH
Q 015712 285 NVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLS 348 (402)
Q Consensus 285 ~~~l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~ 348 (402)
.......+.|||||||.|... -...+.+.++... ...++++.+..++.-+..+.+
T Consensus 124 ~~~~~~fKiiIlDEcdsmtsd-aq~aLrr~mE~~s--------~~trFiLIcnylsrii~pi~S 178 (346)
T KOG0989|consen 124 GYPCPPFKIIILDECDSMTSD-AQAALRRTMEDFS--------RTTRFILICNYLSRIIRPLVS 178 (346)
T ss_pred CCCCCcceEEEEechhhhhHH-HHHHHHHHHhccc--------cceEEEEEcCChhhCChHHHh
Confidence 344566799999999998532 3455555555543 366777777766554444433
No 222
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.36 E-value=0.034 Score=57.08 Aligned_cols=44 Identities=14% Similarity=0.300 Sum_probs=26.8
Q ss_pred CcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHH
Q 015712 179 KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQ 231 (402)
Q Consensus 179 ~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Q 231 (402)
..+++.|++|+|||... -.+...+.... .+.+++++ +..++..+
T Consensus 149 ~~l~l~G~~G~GKThL~-~ai~~~~~~~~-------~~~~v~yi-~~~~~~~~ 192 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLL-HAIGNYILEKN-------PNAKVVYV-TSEKFTND 192 (450)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHhC-------CCCeEEEE-EHHHHHHH
Confidence 45899999999999653 44445444321 24566666 44455444
No 223
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.36 E-value=0.018 Score=53.77 Aligned_cols=18 Identities=28% Similarity=0.351 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCCChhhHh
Q 015712 178 GKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~ 195 (402)
+..+++.||+|+|||...
T Consensus 45 ~~~l~l~Gp~G~GKThLl 62 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLL 62 (235)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 357999999999999643
No 224
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.35 E-value=0.062 Score=54.66 Aligned_cols=19 Identities=32% Similarity=0.471 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCCChhhHhH
Q 015712 178 GKSVVLSSGSGSGRTLAYL 196 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~~ 196 (402)
|+.+++.||||+|||...+
T Consensus 221 ~~~i~~vGptGvGKTTt~~ 239 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLA 239 (424)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 5678999999999998654
No 225
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.35 E-value=0.035 Score=66.30 Aligned_cols=136 Identities=15% Similarity=0.111 Sum_probs=80.9
Q ss_pred CCcHHHHHHHHHHHcC--CcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhh
Q 015712 163 VPSEIQCVGIPAVLNG--KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 240 (402)
Q Consensus 163 ~pt~iQ~~~i~~il~g--~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~ 240 (402)
.+++-|..++..++.+ +=.++.|+.|+|||.+. -.++..+.. .|.++++++||..-+....+...
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l-~~l~~~~~~---------~G~~V~~lAPTgrAA~~L~e~~g--- 495 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIA-QLLLHLASE---------QGYEIQIITAGSLSAQELRQKIP--- 495 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHH-HHHHHHHHh---------cCCeEEEEeCCHHHHHHHHHHhc---
Confidence 5789999999998875 45899999999999753 333333332 47789999999886666544221
Q ss_pred ccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCCCHHHHHHHHHHhhh
Q 015712 241 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 320 (402)
Q Consensus 241 ~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~~ 320 (402)
+....+ ......+..+ .-..|...++ .....+..-++||||||-++- ..++..++.....
T Consensus 496 ----~~A~Ti------~~~l~~l~~~--~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl~----~~~~~~Ll~~a~~ 555 (1960)
T TIGR02760 496 ----RLASTF------ITWVKNLFND--DQDHTVQGLL----DKSSPFSNKDIFVVDEANKLS----NNELLKLIDKAEQ 555 (1960)
T ss_pred ----chhhhH------HHHHHhhccc--ccchhHHHhh----cccCCCCCCCEEEEECCCCCC----HHHHHHHHHHHhh
Confidence 111000 0000011110 1112323332 122234567899999999552 4566777765542
Q ss_pred hhcccCCCCceEEEEeec
Q 015712 321 SALKSNGQGFQTILVTAA 338 (402)
Q Consensus 321 ~~~~~~~~~~q~i~~SAT 338 (402)
.+.++|++.=+
T Consensus 556 -------~garvVlvGD~ 566 (1960)
T TIGR02760 556 -------HNSKLILLNDS 566 (1960)
T ss_pred -------cCCEEEEEcCh
Confidence 36788877654
No 226
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.35 E-value=0.076 Score=54.63 Aligned_cols=90 Identities=11% Similarity=0.065 Sum_probs=44.5
Q ss_pred CCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeE-EEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCCh
Q 015712 178 GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRA-IVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSS 256 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~-Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~ 256 (402)
|.-+.++||||+|||.+...-+....... .+.++ ||-+-+..+. ....++.++...++.+.........
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~--------G~~kV~LI~~Dt~Rig--A~EQLr~~AeilGVpv~~~~~~~Dl 325 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRH--------GASKVALLTTDSYRIG--GHEQLRIYGKILGVPVHAVKDAADL 325 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhc--------CCCeEEEEeCCccchh--HHHHHHHHHHHhCCCeeccCCchhH
Confidence 45588999999999997644433332221 11233 3333332222 1234444454445544433333222
Q ss_pred HHHHHHhcCCccEEEeCchhh
Q 015712 257 KALEDVSNAPIGMLIATPSEV 277 (402)
Q Consensus 257 ~~~~~~l~~~~~IlV~TP~~l 277 (402)
......+...-.|+|-|+|+.
T Consensus 326 ~~aL~~L~d~d~VLIDTaGr~ 346 (484)
T PRK06995 326 RLALSELRNKHIVLIDTIGMS 346 (484)
T ss_pred HHHHHhccCCCeEEeCCCCcC
Confidence 222233334445777788744
No 227
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.33 E-value=0.0054 Score=63.09 Aligned_cols=145 Identities=13% Similarity=0.181 Sum_probs=73.3
Q ss_pred EEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHH-HHHHHHhhccCCcceeeccCCCChHHH-H
Q 015712 183 LSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQG-FHMAKFISHCARLDSSMENGGVSSKAL-E 260 (402)
Q Consensus 183 i~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi-~~~~~~l~~~~~~~v~~~~gg~~~~~~-~ 260 (402)
..+.||||||++++--|+....+ ....-|+.|.......-. ......+....-+.-.+.+++....-. .
T Consensus 2 f~matgsgkt~~ma~lil~~y~k---------gyr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkv 72 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKK---------GYRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKV 72 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHh---------chhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeee
Confidence 45679999999988777776654 233455555543333221 111111100000011111222111000 0
Q ss_pred ---HHhcCCccEEEeCchhhHHHhhcC---CC---CCCCeeEEEE-cCCCccccCC---CHHH------HHHHHHHhhhh
Q 015712 261 ---DVSNAPIGMLIATPSEVLQHIEDR---NV---SCDDIRYVVL-DEADTLFDRG---FGPE------ISKILNPLKDS 321 (402)
Q Consensus 261 ---~~l~~~~~IlV~TP~~l~~~l~~~---~~---~l~~l~~lVl-DEad~~l~~g---f~~~------i~~il~~l~~~ 321 (402)
..-+.+..|+++|.+.|...+.+. .+ ++.+.++|.| ||||++-... ..++ ++..+....
T Consensus 73 n~fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~-- 150 (812)
T COG3421 73 NNFSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLAL-- 150 (812)
T ss_pred cccCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHH--
Confidence 012346789999999987777542 22 3556666655 9999985332 1111 111111111
Q ss_pred hcccCCCCceEEEEeeccCc
Q 015712 322 ALKSNGQGFQTILVTAAIAE 341 (402)
Q Consensus 322 ~~~~~~~~~q~i~~SATl~~ 341 (402)
..+++--++.+|||.+.
T Consensus 151 ---~~nkd~~~lef~at~~k 167 (812)
T COG3421 151 ---EQNKDNLLLEFSATIPK 167 (812)
T ss_pred ---hcCCCceeehhhhcCCc
Confidence 12356678889999995
No 228
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.32 E-value=0.038 Score=53.10 Aligned_cols=120 Identities=17% Similarity=0.217 Sum_probs=61.4
Q ss_pred CcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCC--CCCCCeEEEEcCchHHHHHHHHHH-HHhhccCCcceeeccCCCC
Q 015712 179 KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPM--KPMHPRAIVLCTTEESADQGFHMA-KFISHCARLDSSMENGGVS 255 (402)
Q Consensus 179 ~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~--~~~~~~~Lvl~PtreLa~Qi~~~~-~~l~~~~~~~v~~~~gg~~ 255 (402)
.+++++|+||.|||.. +..+......... ...-|-++|-+|...-....+..+ ..++.- ++. ..+
T Consensus 62 p~lLivG~snnGKT~I-----i~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP--~~~-----~~~ 129 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMI-----IERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAP--YRP-----RDR 129 (302)
T ss_pred CceEEecCCCCcHHHH-----HHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcc--cCC-----CCC
Confidence 4899999999999984 3444433221111 112356666777766554444432 232211 110 111
Q ss_pred hHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCCC--HHHHHHHHHHhhhhhcccCCCCceEE
Q 015712 256 SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGF--GPEISKILNPLKDSALKSNGQGFQTI 333 (402)
Q Consensus 256 ~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~gf--~~~i~~il~~l~~~~~~~~~~~~q~i 333 (402)
..... ..+..++. .-++++|||||+|.++.... ...+...++.|.+. -.+.+|
T Consensus 130 ~~~~~--------------~~~~~llr-----~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~Ne------L~ipiV 184 (302)
T PF05621_consen 130 VAKLE--------------QQVLRLLR-----RLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNE------LQIPIV 184 (302)
T ss_pred HHHHH--------------HHHHHHHH-----HcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhc------cCCCeE
Confidence 11100 01223333 24689999999999886542 23344445555432 256666
Q ss_pred EE
Q 015712 334 LV 335 (402)
Q Consensus 334 ~~ 335 (402)
++
T Consensus 185 ~v 186 (302)
T PF05621_consen 185 GV 186 (302)
T ss_pred Ee
Confidence 55
No 229
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.31 E-value=0.054 Score=49.68 Aligned_cols=19 Identities=26% Similarity=0.354 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCCChhhHh
Q 015712 177 NGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~ 195 (402)
.+..+++.|++|+|||...
T Consensus 37 ~~~~lll~G~~G~GKT~la 55 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLL 55 (226)
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3568999999999999754
No 230
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=96.31 E-value=0.0098 Score=60.55 Aligned_cols=67 Identities=22% Similarity=0.232 Sum_probs=51.2
Q ss_pred CCcHHHHHHHHHHHcC-----CcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHH
Q 015712 163 VPSEIQCVGIPAVLNG-----KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK 237 (402)
Q Consensus 163 ~pt~iQ~~~i~~il~g-----~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~ 237 (402)
.|+--|-.||..+..| +.-.+.|-||||||+..+- ++..+ ..-+||++|.+.||.|.+..++
T Consensus 12 ~PaGDQP~AI~~Lv~gi~~g~~~QtLLGvTGSGKTfT~An-VI~~~------------~rPtLV~AhNKTLAaQLy~Efk 78 (663)
T COG0556 12 KPAGDQPEAIAELVEGIENGLKHQTLLGVTGSGKTFTMAN-VIAKV------------QRPTLVLAHNKTLAAQLYSEFK 78 (663)
T ss_pred CCCCCcHHHHHHHHHHHhcCceeeEEeeeccCCchhHHHH-HHHHh------------CCCeEEEecchhHHHHHHHHHH
Confidence 6777788888876643 4678888999999987533 23322 3458999999999999999999
Q ss_pred Hhhcc
Q 015712 238 FISHC 242 (402)
Q Consensus 238 ~l~~~ 242 (402)
.+...
T Consensus 79 ~fFP~ 83 (663)
T COG0556 79 EFFPE 83 (663)
T ss_pred HhCcC
Confidence 88543
No 231
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.29 E-value=0.046 Score=64.04 Aligned_cols=64 Identities=16% Similarity=0.202 Sum_probs=45.9
Q ss_pred CCcHHHHHHHHHHHcC--CcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHH
Q 015712 163 VPSEIQCVGIPAVLNG--KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQG 232 (402)
Q Consensus 163 ~pt~iQ~~~i~~il~g--~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi 232 (402)
.+++.|..|+..++.+ +-++++|..|+|||... -.++..+..-. ...+..++.++||-.-|..+
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l-~~v~~~~~~l~-----~~~~~~V~glAPTgrAAk~L 1032 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQF-RAVMSAVNTLP-----ESERPRVVGLGPTHRAVGEM 1032 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHH-HHHHHHHHHhh-----cccCceEEEECCcHHHHHHH
Confidence 6899999999999975 46899999999999764 23333332100 11356788899998877654
No 232
>PRK05642 DNA replication initiation factor; Validated
Probab=96.25 E-value=0.03 Score=52.20 Aligned_cols=35 Identities=20% Similarity=0.180 Sum_probs=22.9
Q ss_pred CcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEc
Q 015712 179 KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLC 223 (402)
Q Consensus 179 ~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~ 223 (402)
..+++.|++|+|||.. +-.+...+.. .+.+++|+.
T Consensus 46 ~~l~l~G~~G~GKTHL-l~a~~~~~~~---------~~~~v~y~~ 80 (234)
T PRK05642 46 SLIYLWGKDGVGRSHL-LQAACLRFEQ---------RGEPAVYLP 80 (234)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHHHh---------CCCcEEEee
Confidence 4589999999999964 3344444432 245677664
No 233
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=96.22 E-value=0.028 Score=62.09 Aligned_cols=135 Identities=19% Similarity=0.125 Sum_probs=83.5
Q ss_pred CCCCcHHHHHHHHHHH-----cCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHH
Q 015712 161 LFVPSEIQCVGIPAVL-----NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHM 235 (402)
Q Consensus 161 ~~~pt~iQ~~~i~~il-----~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~ 235 (402)
+..+.++|...+..+. .+.+.++....|.|||+.-+.-+.. +.... ....+.++|+||+-- +.+..+.
T Consensus 336 ~~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~-~~~~~-----~~~~~~~liv~p~s~-~~nw~~e 408 (866)
T COG0553 336 SAELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLS-LLESI-----KVYLGPALIVVPASL-LSNWKRE 408 (866)
T ss_pred hhhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHh-hhhcc-----cCCCCCeEEEecHHH-HHHHHHH
Confidence 3566778888876644 3677888899999999875444433 22211 112467999999754 4444555
Q ss_pred HHHhhccCCcc-eeeccCCCC-----hHHHHHHhcCC----ccEEEeCchhhHHHhh-cCCCCCCCeeEEEEcCCCcccc
Q 015712 236 AKFISHCARLD-SSMENGGVS-----SKALEDVSNAP----IGMLIATPSEVLQHIE-DRNVSCDDIRYVVLDEADTLFD 304 (402)
Q Consensus 236 ~~~l~~~~~~~-v~~~~gg~~-----~~~~~~~l~~~----~~IlV~TP~~l~~~l~-~~~~~l~~l~~lVlDEad~~l~ 304 (402)
+..+... ++ +...+|... ........... .+|+++|-+.+...+. ...+.-....++|+||+|.+-+
T Consensus 409 ~~k~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn 486 (866)
T COG0553 409 FEKFAPD--LRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKN 486 (866)
T ss_pred HhhhCcc--ccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhh
Confidence 5555433 34 666666654 22222223322 6899999988877421 1234445688999999999643
No 234
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.21 E-value=0.037 Score=52.45 Aligned_cols=17 Identities=18% Similarity=0.436 Sum_probs=14.9
Q ss_pred CcEEEEcCCCCChhhHh
Q 015712 179 KSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 179 ~dvli~a~TGsGKTla~ 195 (402)
.++++.||+|+|||...
T Consensus 43 ~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVA 59 (261)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 47999999999999764
No 235
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.21 E-value=0.05 Score=55.65 Aligned_cols=54 Identities=20% Similarity=0.353 Sum_probs=32.1
Q ss_pred CeeEEEEcCCCccccCC-CHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHH
Q 015712 290 DIRYVVLDEADTLFDRG-FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSL 350 (402)
Q Consensus 290 ~l~~lVlDEad~~l~~g-f~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~ 350 (402)
.+++|+|||+|.+.+.. ....+..++..+.. .+.|+|+.|..-|..+..+..++
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~-------~~k~iIitsd~~p~~l~~l~~rL 248 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHD-------SGKQIVICSDREPQKLSEFQDRL 248 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHH-------cCCeEEEECCCCHHHHHHHHHHH
Confidence 46799999999876543 23445555555543 24566666655555555443333
No 236
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=96.21 E-value=0.0074 Score=65.29 Aligned_cols=156 Identities=14% Similarity=0.196 Sum_probs=88.7
Q ss_pred CCcHHHHHHHHHHH---cC-CcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHH
Q 015712 163 VPSEIQCVGIPAVL---NG-KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 238 (402)
Q Consensus 163 ~pt~iQ~~~i~~il---~g-~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~ 238 (402)
.+.++|...+..+. ++ -+-|+.-.+|-|||.. .|.++.++..... ..|| -||+||+--|.+=.. .+..
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQ-tIsLitYLmE~K~-----~~GP-~LvivPlstL~NW~~-Ef~k 465 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQ-TISLITYLMEHKQ-----MQGP-FLIIVPLSTLVNWSS-EFPK 465 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHH-HHHHHHHHHHHcc-----cCCC-eEEeccccccCCchh-hccc
Confidence 67788888877654 33 3678888999999976 4666666666543 2466 477889887765322 2222
Q ss_pred hhccCCcceeeccCCCChHH---HHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCCCHHHHHHHH
Q 015712 239 ISHCARLDSSMENGGVSSKA---LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315 (402)
Q Consensus 239 l~~~~~~~v~~~~gg~~~~~---~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~gf~~~i~~il 315 (402)
++ ..+..+. |-|..... +........+||++|-+.+.. ....+.--+..|+||||.|+|- .....+...+
T Consensus 466 Wa--PSv~~i~-YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik--dk~lLsKI~W~yMIIDEGHRmK--Na~~KLt~~L 538 (1157)
T KOG0386|consen 466 WA--PSVQKIQ-YKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK--DKALLSKISWKYMIIDEGHRMK--NAICKLTDTL 538 (1157)
T ss_pred cc--cceeeee-eeCCHHHHhhHHHHHhcccceeeeeeHHHhcC--CHHHHhccCCcceeeccccccc--chhhHHHHHh
Confidence 21 1233333 33332211 112233568999999876644 1112233456899999999993 3233343333
Q ss_pred HHhhhhhcccCCCCceEEEEeeccCc
Q 015712 316 NPLKDSALKSNGQGFQTILVTAAIAE 341 (402)
Q Consensus 316 ~~l~~~~~~~~~~~~q~i~~SATl~~ 341 (402)
... ......++++.|.-.
T Consensus 539 ~t~--------y~~q~RLLLTGTPLQ 556 (1157)
T KOG0386|consen 539 NTH--------YRAQRRLLLTGTPLQ 556 (1157)
T ss_pred hcc--------ccchhhhhhcCChhh
Confidence 321 123455666666543
No 237
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.16 E-value=0.042 Score=65.72 Aligned_cols=62 Identities=19% Similarity=0.182 Sum_probs=45.6
Q ss_pred CCcHHHHHHHHHHHcC--CcEEEEcCCCCChhhHhH---HHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHH
Q 015712 163 VPSEIQCVGIPAVLNG--KSVVLSSGSGSGRTLAYL---LPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGF 233 (402)
Q Consensus 163 ~pt~iQ~~~i~~il~g--~dvli~a~TGsGKTla~~---lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~ 233 (402)
.+++.|+.|+..++.+ +-++++|..|+|||.... -++.+.+.. .+..++.++||..-|..+.
T Consensus 1019 ~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~---------~g~~v~glApT~~Aa~~L~ 1085 (1960)
T TIGR02760 1019 RLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFES---------EQLQVIGLAPTHEAVGELK 1085 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHh---------cCCeEEEEeChHHHHHHHH
Confidence 7899999999998876 457889999999997651 223232221 4678999999977766543
No 238
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.16 E-value=0.02 Score=56.98 Aligned_cols=66 Identities=14% Similarity=0.080 Sum_probs=39.9
Q ss_pred CCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccC
Q 015712 178 GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENG 252 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~g 252 (402)
++-+.+.||||.|||...+=-+..+... .....-+||.+-|--..-. ..++.++.-.++.+..++.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~-------~~~~kVaiITtDtYRIGA~--EQLk~Ya~im~vp~~vv~~ 268 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVML-------KKKKKVAIITTDTYRIGAV--EQLKTYADIMGVPLEVVYS 268 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhh-------ccCcceEEEEeccchhhHH--HHHHHHHHHhCCceEEecC
Confidence 6789999999999999865444444422 1245567777776554432 3445555545555544443
No 239
>PRK12377 putative replication protein; Provisional
Probab=96.11 E-value=0.11 Score=49.02 Aligned_cols=46 Identities=17% Similarity=0.184 Sum_probs=28.9
Q ss_pred CCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHH
Q 015712 178 GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFH 234 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~ 234 (402)
..++++.|++|+|||.. +..+...+.. .+..++++ +..+|..++..
T Consensus 101 ~~~l~l~G~~GtGKThL-a~AIa~~l~~---------~g~~v~~i-~~~~l~~~l~~ 146 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHL-AAAIGNRLLA---------KGRSVIVV-TVPDVMSRLHE 146 (248)
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHHHHH---------cCCCeEEE-EHHHHHHHHHH
Confidence 35799999999999964 3445555543 24445444 55566665443
No 240
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.08 E-value=0.049 Score=55.03 Aligned_cols=37 Identities=11% Similarity=0.269 Sum_probs=24.3
Q ss_pred CcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEc
Q 015712 179 KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLC 223 (402)
Q Consensus 179 ~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~ 223 (402)
..+++.|++|+|||... ..+...+.... .+..++++.
T Consensus 137 n~l~l~G~~G~GKThL~-~ai~~~l~~~~-------~~~~v~yi~ 173 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLL-HAIGNEILENN-------PNAKVVYVS 173 (405)
T ss_pred CeEEEECCCCCcHHHHH-HHHHHHHHHhC-------CCCcEEEEE
Confidence 35899999999999753 45555554421 245677764
No 241
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.05 E-value=0.075 Score=53.84 Aligned_cols=16 Identities=25% Similarity=0.424 Sum_probs=13.6
Q ss_pred cEEEEcCCCCChhhHh
Q 015712 180 SVVLSSGSGSGRTLAY 195 (402)
Q Consensus 180 dvli~a~TGsGKTla~ 195 (402)
-++++|++|+|||...
T Consensus 102 vi~lvG~~GvGKTTta 117 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTC 117 (429)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999998764
No 242
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=95.99 E-value=0.042 Score=58.91 Aligned_cols=66 Identities=21% Similarity=0.252 Sum_probs=50.9
Q ss_pred CCcHHHHHHHHHHHcC-----CcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHH
Q 015712 163 VPSEIQCVGIPAVLNG-----KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK 237 (402)
Q Consensus 163 ~pt~iQ~~~i~~il~g-----~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~ 237 (402)
.|+-.|..+|..+.+| +..++.|-||||||+...- ++.. .+..+|||+|+..+|.|++..++
T Consensus 9 ~~~~~Q~~ai~~l~~~~~~~~~~~~l~Gvtgs~kt~~~a~-~~~~------------~~~p~Lvi~~n~~~A~ql~~el~ 75 (655)
T TIGR00631 9 QPAGDQPKAIAKLVEGLTDGEKHQTLLGVTGSGKTFTMAN-VIAQ------------VNRPTLVIAHNKTLAAQLYNEFK 75 (655)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcEEEECCCCcHHHHHHHH-HHHH------------hCCCEEEEECCHHHHHHHHHHHH
Confidence 6888999998887543 2667999999999987542 2222 13358999999999999999998
Q ss_pred Hhhc
Q 015712 238 FISH 241 (402)
Q Consensus 238 ~l~~ 241 (402)
.+..
T Consensus 76 ~f~p 79 (655)
T TIGR00631 76 EFFP 79 (655)
T ss_pred HhCC
Confidence 8753
No 243
>PF13173 AAA_14: AAA domain
Probab=95.93 E-value=0.035 Score=46.45 Aligned_cols=40 Identities=15% Similarity=0.317 Sum_probs=26.6
Q ss_pred CeeEEEEcCCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccC
Q 015712 290 DIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIA 340 (402)
Q Consensus 290 ~l~~lVlDEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~ 340 (402)
.-.+|+|||+|.+ .++...+..+.+.- .+.++++.+....
T Consensus 61 ~~~~i~iDEiq~~--~~~~~~lk~l~d~~---------~~~~ii~tgS~~~ 100 (128)
T PF13173_consen 61 GKKYIFIDEIQYL--PDWEDALKFLVDNG---------PNIKIILTGSSSS 100 (128)
T ss_pred CCcEEEEehhhhh--ccHHHHHHHHHHhc---------cCceEEEEccchH
Confidence 5678999999987 34566666666533 2567777665443
No 244
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=95.88 E-value=0.098 Score=53.95 Aligned_cols=164 Identities=12% Similarity=0.083 Sum_probs=96.4
Q ss_pred CCcHHHHHHHHHHHc------C----CcEEEEcCCCCChhhHhH-HHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHH
Q 015712 163 VPSEIQCVGIPAVLN------G----KSVVLSSGSGSGRTLAYL-LPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQ 231 (402)
Q Consensus 163 ~pt~iQ~~~i~~il~------g----~dvli~a~TGsGKTla~~-lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Q 231 (402)
.+-|+|.-.+-.++. | +..+|.-|-+-|||.... |.....+... ..+-...|++|+.+.+.+
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~-------~~~~~~~i~A~s~~qa~~ 133 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW-------RSGAGIYILAPSVEQAAN 133 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh-------hcCCcEEEEeccHHHHHH
Confidence 567999999988872 1 247888899999997654 4444444443 257789999999999999
Q ss_pred HHHHHHHhhccCC-cceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhc--CCCCCCCeeEEEEcCCCccccCCCH
Q 015712 232 GFHMAKFISHCAR-LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIED--RNVSCDDIRYVVLDEADTLFDRGFG 308 (402)
Q Consensus 232 i~~~~~~l~~~~~-~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~--~~~~l~~l~~lVlDEad~~l~~gf~ 308 (402)
.+..++......+ +...+ ..-.+...|...--...+..+.. +..+-.+..+.|+||.|...+.+
T Consensus 134 ~F~~ar~mv~~~~~l~~~~-----------~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~-- 200 (546)
T COG4626 134 SFNPARDMVKRDDDLRDLC-----------NVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE-- 200 (546)
T ss_pred hhHHHHHHHHhCcchhhhh-----------ccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH--
Confidence 9998887654432 11000 00001111222222222222222 23444567899999999764332
Q ss_pred HHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhc
Q 015712 309 PEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMEC 353 (402)
Q Consensus 309 ~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~ 353 (402)
..+..+..-+..+ ++.+++..|- -+......+...+..
T Consensus 201 ~~~~~~~~g~~ar------~~~l~~~ITT-~g~~~~g~~~q~~~y 238 (546)
T COG4626 201 DMYSEAKGGLGAR------PEGLVVYITT-SGDPPAGVFKQKLQY 238 (546)
T ss_pred HHHHHHHhhhccC------cCceEEEEec-CCCCCccHHHHHHHH
Confidence 5555555555432 4677777765 555555555554444
No 245
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.83 E-value=0.073 Score=56.16 Aligned_cols=49 Identities=18% Similarity=0.249 Sum_probs=31.0
Q ss_pred CCeeEEEEcCCCccccCC-CHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhH
Q 015712 289 DDIRYVVLDEADTLFDRG-FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLG 344 (402)
Q Consensus 289 ~~l~~lVlDEad~~l~~g-f~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~ 344 (402)
.++++||||++|.+.... ....+-.++..+.. .+.++|+.|-..+.++.
T Consensus 376 ~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e-------~gk~IIITSd~~P~eL~ 425 (617)
T PRK14086 376 REMDILLVDDIQFLEDKESTQEEFFHTFNTLHN-------ANKQIVLSSDRPPKQLV 425 (617)
T ss_pred hcCCEEEEehhccccCCHHHHHHHHHHHHHHHh-------cCCCEEEecCCChHhhh
Confidence 457899999999875433 23445556665543 35678876666665544
No 246
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.76 E-value=0.17 Score=48.20 Aligned_cols=132 Identities=9% Similarity=0.157 Sum_probs=67.4
Q ss_pred cCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcC-ch--HHHHHHHHHHHHhhccCCcceeeccCC
Q 015712 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCT-TE--ESADQGFHMAKFISHCARLDSSMENGG 253 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~P-tr--eLa~Qi~~~~~~l~~~~~~~v~~~~gg 253 (402)
.+..+++.+++|+|||..+.+-+.. +.. .+..+.++.- +. ..+.|.. .+....++
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~-l~~---------~~~~v~~i~~D~~ri~~~~ql~----~~~~~~~~-------- 131 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQ-FHG---------KKKTVGFITTDHSRIGTVQQLQ----DYVKTIGF-------- 131 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHH-HHH---------cCCeEEEEecCCCCHHHHHHHH----HHhhhcCc--------
Confidence 4567999999999999876544333 222 2344444432 32 2333322 22222222
Q ss_pred CChHHHHHHhcCCccEEE-eCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCCCHHHHHHHHHHhhhhhcccCCCCceE
Q 015712 254 VSSKALEDVSNAPIGMLI-ATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQT 332 (402)
Q Consensus 254 ~~~~~~~~~l~~~~~IlV-~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~ 332 (402)
.+.+ .+|..+.+.+..- -...+.++++||-+-++... ...+..+...+... .+..-+
T Consensus 132 --------------~~~~~~~~~~l~~~l~~l-~~~~~~D~ViIDt~Gr~~~~--~~~l~el~~~~~~~-----~~~~~~ 189 (270)
T PRK06731 132 --------------EVIAVRDEAAMTRALTYF-KEEARVDYILIDTAGKNYRA--SETVEEMIETMGQV-----EPDYIC 189 (270)
T ss_pred --------------eEEecCCHHHHHHHHHHH-HhcCCCCEEEEECCCCCcCC--HHHHHHHHHHHhhh-----CCCeEE
Confidence 2222 3555555544321 01245789999998765311 23333333332211 123346
Q ss_pred EEEeeccC-chhHHHHHHHhh
Q 015712 333 ILVTAAIA-EMLGEQLSSLME 352 (402)
Q Consensus 333 i~~SATl~-~~v~~~~~~~l~ 352 (402)
+.+|||.. .+..+.++.|-.
T Consensus 190 LVl~a~~~~~d~~~~~~~f~~ 210 (270)
T PRK06731 190 LTLSASMKSKDMIEIITNFKD 210 (270)
T ss_pred EEEcCccCHHHHHHHHHHhCC
Confidence 67999875 466677777654
No 247
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.72 E-value=0.13 Score=47.78 Aligned_cols=142 Identities=13% Similarity=0.149 Sum_probs=68.4
Q ss_pred HcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcC---chHHHHHHHHHHHHhhccCCcceeec-c
Q 015712 176 LNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCT---TEESADQGFHMAKFISHCARLDSSME-N 251 (402)
Q Consensus 176 l~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~P---treLa~Qi~~~~~~l~~~~~~~v~~~-~ 251 (402)
..|.-+++.|++|+|||... +-++..+... .+..++|++- ..+++..+.. . ..++....+ .
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~-~~~~~~~~~~--------~g~~vly~s~E~~~~~~~~r~~~---~---~~~~~~~~~~~ 75 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFA-LNIAENIAKK--------QGKPVLFFSLEMSKEQLLQRLLA---S---ESGISLSKLRT 75 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHH-HHHHHHHHHh--------CCCceEEEeCCCCHHHHHHHHHH---H---hcCCCHHHHhc
Confidence 34667899999999999644 4443333321 2667888873 3344433211 1 112221111 1
Q ss_pred CCCChHH------HHHHhcCCccEEEe-----CchhhHHHhhcCCCCCCCeeEEEEcCCCccccCC----CHHHHHHHHH
Q 015712 252 GGVSSKA------LEDVSNAPIGMLIA-----TPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRG----FGPEISKILN 316 (402)
Q Consensus 252 gg~~~~~------~~~~l~~~~~IlV~-----TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~g----f~~~i~~il~ 316 (402)
+...... ....+.. ..+.|. |+..|...+.... .-.++++||||=++.+.... ....+..++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~l~~~i~~~~-~~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~ 153 (242)
T cd00984 76 GSLSDEDWERLAEAIGELKE-LPIYIDDSSSLTVSDIRSRARRLK-KEHGLGLIVIDYLQLMSGSKKKGNRQQEVAEISR 153 (242)
T ss_pred CCCCHHHHHHHHHHHHHHhc-CCEEEeCCCCCCHHHHHHHHHHHH-HhcCCCEEEEcCchhcCCCCCCCCHHHHHHHHHH
Confidence 2112111 0111222 223332 3444544443211 11278999999999764332 2344566666
Q ss_pred HhhhhhcccCCCCceEEEEee
Q 015712 317 PLKDSALKSNGQGFQTILVTA 337 (402)
Q Consensus 317 ~l~~~~~~~~~~~~q~i~~SA 337 (402)
.|..... ..++-++++|-
T Consensus 154 ~L~~la~---~~~~~ii~~~q 171 (242)
T cd00984 154 SLKLLAK---ELNVPVIALSQ 171 (242)
T ss_pred HHHHHHH---HhCCeEEEecc
Confidence 6653221 12555666553
No 248
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.68 E-value=0.2 Score=47.79 Aligned_cols=20 Identities=15% Similarity=0.237 Sum_probs=15.5
Q ss_pred CcEEEEcCCCCChhhHhHHH
Q 015712 179 KSVVLSSGSGSGRTLAYLLP 198 (402)
Q Consensus 179 ~dvli~a~TGsGKTla~~lp 198 (402)
+-++++|++|+|||....--
T Consensus 73 ~vi~l~G~~G~GKTTt~akL 92 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKL 92 (272)
T ss_pred eEEEEECCCCCcHHHHHHHH
Confidence 45788899999999865433
No 249
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.67 E-value=0.15 Score=50.83 Aligned_cols=30 Identities=27% Similarity=0.321 Sum_probs=20.3
Q ss_pred CCCeeEEEEcCCCccccCCCHHHHHHHHHHh
Q 015712 288 CDDIRYVVLDEADTLFDRGFGPEISKILNPL 318 (402)
Q Consensus 288 l~~l~~lVlDEad~~l~~gf~~~i~~il~~l 318 (402)
....-+||+||+|.|++..- .-+-.|++..
T Consensus 121 ~~~~~IvvLDEid~L~~~~~-~~LY~L~r~~ 150 (366)
T COG1474 121 KGKTVIVILDEVDALVDKDG-EVLYSLLRAP 150 (366)
T ss_pred cCCeEEEEEcchhhhccccc-hHHHHHHhhc
Confidence 34566899999999987653 4455555543
No 250
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.61 E-value=0.089 Score=48.52 Aligned_cols=44 Identities=16% Similarity=0.280 Sum_probs=25.5
Q ss_pred CeeEEEEcCCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCc
Q 015712 290 DIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 341 (402)
Q Consensus 290 ~l~~lVlDEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~ 341 (402)
..++|||||+|.+- ..-...+..++..+.. .+..+++++++.++
T Consensus 90 ~~~~liiDdi~~l~-~~~~~~L~~~~~~~~~-------~~~~~vl~~~~~~~ 133 (227)
T PRK08903 90 EAELYAVDDVERLD-DAQQIALFNLFNRVRA-------HGQGALLVAGPAAP 133 (227)
T ss_pred cCCEEEEeChhhcC-chHHHHHHHHHHHHHH-------cCCcEEEEeCCCCH
Confidence 46689999999863 2233445555554432 12335677776543
No 251
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=95.59 E-value=0.08 Score=57.39 Aligned_cols=151 Identities=16% Similarity=0.180 Sum_probs=76.4
Q ss_pred CCCCCcHHHHHHHHHHH--cCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHH
Q 015712 160 GLFVPSEIQCVGIPAVL--NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK 237 (402)
Q Consensus 160 g~~~pt~iQ~~~i~~il--~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~ 237 (402)
|+...|..-.+.+.... .|-.+|+.-..|-||||-. +..++.++.... ..-.+||||||..-+. -.++.|.
T Consensus 676 GvqFMwd~~~eSlkr~~~~~GsGcILAHcMGLGKTlQV-vtflhTvL~c~k-----lg~ktaLvV~PlNt~~-NW~~EFe 748 (1567)
T KOG1015|consen 676 GVQFMWDCCCESLKRTKKSPGSGCILAHCMGLGKTLQV-VTFLHTVLLCDK-----LGFKTALVVCPLNTAL-NWMNEFE 748 (1567)
T ss_pred chhHHHHHHHHHHHhhcCCCCcchHHHHhhcccceehh-hHHHHHHHHhhc-----cCCceEEEEcchHHHH-HHHHHHH
Confidence 44334443344444332 2456888888999999864 344444433211 1456899999975543 3344555
Q ss_pred Hhhcc----CCcceeeccCCCChHHHHHHhc---CCccEEEeCchhhHHHhhcC-------------CCCCCCeeEEEEc
Q 015712 238 FISHC----ARLDSSMENGGVSSKALEDVSN---APIGMLIATPSEVLQHIEDR-------------NVSCDDIRYVVLD 297 (402)
Q Consensus 238 ~l~~~----~~~~v~~~~gg~~~~~~~~~l~---~~~~IlV~TP~~l~~~l~~~-------------~~~l~~l~~lVlD 297 (402)
.+... -.+.|..+..-.....+...|. ..-.|.|.-...+..+-..+ .+.-..-++||.|
T Consensus 749 kWm~~~e~~~~leV~eL~~vkr~e~R~~~L~~W~~~ggVmIiGYdmyRnLa~gr~vk~rk~ke~f~k~lvdpGPD~vVCD 828 (1567)
T KOG1015|consen 749 KWMEGLEDDEKLEVSELATVKRPEERSYMLQRWQEDGGVMIIGYDMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCD 828 (1567)
T ss_pred HhcccccccccceeehhhhccChHHHHHHHHHHHhcCCEEEEehHHHHHHhcccchhhhHHHHHHHHhccCCCCCeEEec
Confidence 54442 1345554443333344443332 11133333222222221111 1112356899999
Q ss_pred CCCccccCCCHHHHHHHHHHhh
Q 015712 298 EADTLFDRGFGPEISKILNPLK 319 (402)
Q Consensus 298 Ead~~l~~gf~~~i~~il~~l~ 319 (402)
|+|.+ .+-...+...+..+.
T Consensus 829 E~HiL--KNeksa~Skam~~ir 848 (1567)
T KOG1015|consen 829 EGHIL--KNEKSAVSKAMNSIR 848 (1567)
T ss_pred chhhh--ccchHHHHHHHHHHH
Confidence 99976 333455666666554
No 252
>PRK11054 helD DNA helicase IV; Provisional
Probab=95.55 E-value=0.059 Score=58.09 Aligned_cols=70 Identities=14% Similarity=0.126 Sum_probs=50.5
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHh
Q 015712 162 FVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 239 (402)
Q Consensus 162 ~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l 239 (402)
..+++-|+.|+-. ...+++|.|..|||||.+.+--+ .++.... ...+.++|+|+.|+..|..+.+.+...
T Consensus 195 ~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~-ayLl~~~-----~~~~~~IL~ltft~~AA~em~eRL~~~ 264 (684)
T PRK11054 195 SPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARA-GWLLARG-----QAQPEQILLLAFGRQAAEEMDERIRER 264 (684)
T ss_pred CCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHH-HHHHHhC-----CCCHHHeEEEeccHHHHHHHHHHHHHh
Confidence 4689999998753 33568999999999998754433 3333321 113558999999999999988877654
No 253
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=95.55 E-value=0.037 Score=60.49 Aligned_cols=81 Identities=11% Similarity=0.035 Sum_probs=60.7
Q ss_pred ccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhH--
Q 015712 267 IGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLG-- 344 (402)
Q Consensus 267 ~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~-- 344 (402)
..|+++||..|..-+-.+.+++..+..|||||||++.+..-...|-.+++.-. +..-+.+|||.....+.
T Consensus 8 ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n--------~~gfIkafSdsP~~~~~g~ 79 (814)
T TIGR00596 8 GGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKN--------KTGFIKAFSDNPEAFTMGF 79 (814)
T ss_pred CCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhC--------CCcceEEecCCCcccccch
Confidence 46999999999888888899999999999999999976665555555555432 47789999999876431
Q ss_pred HHHHHHhhccc
Q 015712 345 EQLSSLMECLE 355 (402)
Q Consensus 345 ~~~~~~l~~~~ 355 (402)
.-+...|+++.
T Consensus 80 ~~l~~vmk~L~ 90 (814)
T TIGR00596 80 SPLETKMRNLF 90 (814)
T ss_pred HHHHHHHHHhC
Confidence 22445555543
No 254
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.50 E-value=0.11 Score=53.02 Aligned_cols=18 Identities=28% Similarity=0.434 Sum_probs=15.0
Q ss_pred CcEEEEcCCCCChhhHhH
Q 015712 179 KSVVLSSGSGSGRTLAYL 196 (402)
Q Consensus 179 ~dvli~a~TGsGKTla~~ 196 (402)
..++++|++|+|||.+..
T Consensus 96 ~vI~lvG~~GsGKTTtaa 113 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAA 113 (437)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 458899999999998653
No 255
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.50 E-value=0.064 Score=53.77 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=18.3
Q ss_pred CcEEEEcCCCCChhhHhHHHHHHHHH
Q 015712 179 KSVVLSSGSGSGRTLAYLLPLVQMLR 204 (402)
Q Consensus 179 ~dvli~a~TGsGKTla~~lpil~~l~ 204 (402)
.++++.|++|+|||... --++..+.
T Consensus 56 ~~~lI~G~~GtGKT~l~-~~v~~~l~ 80 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTV-KKVFEELE 80 (394)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHH
Confidence 57999999999999763 34444443
No 256
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=95.48 E-value=0.033 Score=60.04 Aligned_cols=69 Identities=13% Similarity=0.051 Sum_probs=50.9
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHh
Q 015712 163 VPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 239 (402)
Q Consensus 163 ~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l 239 (402)
.+++-|.+++.+ .+..++|.|+.|||||.+..-=+...+.... ..+.++|+|+-|+..|..+...+..+
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~------v~p~~IL~lTFT~kAA~em~~Rl~~~ 70 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCG------YQARHIAAVTFTNKAAREMKERVAQT 70 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcC------CCHHHeeeEechHHHHHHHHHHHHHH
Confidence 468889998865 3457889999999999886555444443211 13458999999999999988877665
No 257
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.47 E-value=0.13 Score=52.72 Aligned_cols=52 Identities=23% Similarity=0.234 Sum_probs=33.5
Q ss_pred cCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHh
Q 015712 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 239 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l 239 (402)
.|.-+++.|++|+|||...+.-+. .+.. .+.+++|++- .+-..|+...+..+
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~-~~a~---------~g~~vlYvs~-Ees~~qi~~ra~rl 130 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAA-RLAA---------AGGKVLYVSG-EESASQIKLRAERL 130 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-HHHh---------cCCeEEEEEc-cccHHHHHHHHHHc
Confidence 355689999999999975433333 3322 3567888874 45556766655554
No 258
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.39 E-value=0.06 Score=52.60 Aligned_cols=67 Identities=19% Similarity=0.286 Sum_probs=45.5
Q ss_pred HHHHHHCCCCCCcHHHHHHHHH-HHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHH
Q 015712 153 IKAVEKMGLFVPSEIQCVGIPA-VLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESA 229 (402)
Q Consensus 153 ~~~l~~~g~~~pt~iQ~~~i~~-il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa 229 (402)
+..|.+.|+ +++.|...+.. +..+++++++|+||||||. ++-.++..+... ....+++++-.+.||.
T Consensus 124 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTT-ll~aL~~~~~~~-------~~~~rivtIEd~~El~ 191 (319)
T PRK13894 124 LDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTT-LVNAIINEMVIQ-------DPTERVFIIEDTGEIQ 191 (319)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHhhhhc-------CCCceEEEEcCCCccc
Confidence 455556665 45677777765 4567899999999999994 455566554321 1345788888888773
No 259
>PRK06904 replicative DNA helicase; Validated
Probab=95.35 E-value=0.34 Score=50.04 Aligned_cols=151 Identities=15% Similarity=0.197 Sum_probs=76.8
Q ss_pred cCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeec-cC-CC
Q 015712 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSME-NG-GV 254 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~-~g-g~ 254 (402)
.|.=+|+.|.+|.|||. |++-++..+... .+..++|++.- --..|+...+-. ...++...-+ .| ..
T Consensus 220 ~G~LiiIaarPg~GKTa-falnia~~~a~~--------~g~~Vl~fSlE-Ms~~ql~~Rlla--~~s~v~~~~i~~g~~l 287 (472)
T PRK06904 220 PSDLIIVAARPSMGKTT-FAMNLCENAAMA--------SEKPVLVFSLE-MPAEQIMMRMLA--SLSRVDQTKIRTGQNL 287 (472)
T ss_pred CCcEEEEEeCCCCChHH-HHHHHHHHHHHh--------cCCeEEEEecc-CCHHHHHHHHHH--hhCCCCHHHhccCCCC
Confidence 44557889999999996 555555544321 24456666432 333443333222 2223333222 23 23
Q ss_pred ChHHHH------HHhcCCccEEEe-----CchhhHHHhhcCCCCCCCeeEEEEcCCCccccCC----CHHHHHHHHHHhh
Q 015712 255 SSKALE------DVSNAPIGMLIA-----TPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRG----FGPEISKILNPLK 319 (402)
Q Consensus 255 ~~~~~~------~~l~~~~~IlV~-----TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~g----f~~~i~~il~~l~ 319 (402)
+..+.. ..+.....+.|- |+..+...+++.......+++||||=.+.|-..+ ...++..|.+.|+
T Consensus 288 ~~~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK 367 (472)
T PRK06904 288 DQQDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRAPGFEDNRTLEIAEISRSLK 367 (472)
T ss_pred CHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCCCCCCCcHHHHHHHHHHHHH
Confidence 322221 123223445553 3334433332211112358999999999775333 3445777777665
Q ss_pred hhhcccCCCCceEEEEeeccCchh
Q 015712 320 DSALKSNGQGFQTILVTAAIAEML 343 (402)
Q Consensus 320 ~~~~~~~~~~~q~i~~SATl~~~v 343 (402)
... ..-++.+|++| -++..+
T Consensus 368 ~lA---kel~ipVi~ls-QLnR~~ 387 (472)
T PRK06904 368 ALA---KELKVPVVALS-QLNRTL 387 (472)
T ss_pred HHH---HHhCCeEEEEE-ecCchh
Confidence 433 12377888887 455444
No 260
>PRK09183 transposase/IS protein; Provisional
Probab=95.35 E-value=0.24 Score=46.95 Aligned_cols=21 Identities=29% Similarity=0.392 Sum_probs=17.8
Q ss_pred HHcCCcEEEEcCCCCChhhHh
Q 015712 175 VLNGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 175 il~g~dvli~a~TGsGKTla~ 195 (402)
+..|.++++.||+|+|||...
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa 119 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLA 119 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHH
Confidence 456889999999999999654
No 261
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.34 E-value=0.082 Score=49.29 Aligned_cols=53 Identities=25% Similarity=0.226 Sum_probs=37.2
Q ss_pred cCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhh
Q 015712 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 240 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~ 240 (402)
.|..+++.|++|+|||...+--+...+. .+-.++|++ +.+-..|+.+.+..++
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~----------~ge~~lyvs-~ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQ----------MGEPGIYVA-LEEHPVQVRRNMAQFG 72 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH----------cCCcEEEEE-eeCCHHHHHHHHHHhC
Confidence 3568999999999999865444455443 366788887 5566677777666553
No 262
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.33 E-value=0.054 Score=55.56 Aligned_cols=18 Identities=17% Similarity=0.272 Sum_probs=14.9
Q ss_pred cEEEEcCCCCChhhHhHH
Q 015712 180 SVVLSSGSGSGRTLAYLL 197 (402)
Q Consensus 180 dvli~a~TGsGKTla~~l 197 (402)
.+|++||.|+|||.+..+
T Consensus 42 a~Lf~GP~GtGKTTlAri 59 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARI 59 (484)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 479999999999986533
No 263
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.33 E-value=0.053 Score=52.04 Aligned_cols=19 Identities=26% Similarity=0.466 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCCChhhHhH
Q 015712 178 GKSVVLSSGSGSGRTLAYL 196 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~~ 196 (402)
++.++++||||+|||....
T Consensus 194 ~~vi~~vGptGvGKTTt~~ 212 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLA 212 (282)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4468899999999998653
No 264
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=95.33 E-value=0.19 Score=51.13 Aligned_cols=146 Identities=15% Similarity=0.154 Sum_probs=71.3
Q ss_pred HcCCcEEEEcCCCCChhhHhHHHHHHHHH-hhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeec-cCC
Q 015712 176 LNGKSVVLSSGSGSGRTLAYLLPLVQMLR-RDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSME-NGG 253 (402)
Q Consensus 176 l~g~dvli~a~TGsGKTla~~lpil~~l~-~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~-~gg 253 (402)
..|.-+++.|++|+|||.. ++-+...+. . .+..++|++ ...-+.|+...+-. ...++....+ .|.
T Consensus 192 ~~g~liviag~pg~GKT~~-al~ia~~~a~~---------~g~~v~~fS-lEm~~~~l~~Rl~~--~~~~v~~~~~~~~~ 258 (421)
T TIGR03600 192 VKGDLIVIGARPSMGKTTL-ALNIAENVALR---------EGKPVLFFS-LEMSAEQLGERLLA--SKSGINTGNIRTGR 258 (421)
T ss_pred CCCceEEEEeCCCCCHHHH-HHHHHHHHHHh---------CCCcEEEEE-CCCCHHHHHHHHHH--HHcCCCHHHHhcCC
Confidence 3456689999999999964 444443332 2 245677775 22233333332221 2223332222 233
Q ss_pred CChHHHH------HHhcCCccEEEe-Cc----hhhHHHhhcCCCCCCCeeEEEEcCCCccccC---CCHHHHHHHHHHhh
Q 015712 254 VSSKALE------DVSNAPIGMLIA-TP----SEVLQHIEDRNVSCDDIRYVVLDEADTLFDR---GFGPEISKILNPLK 319 (402)
Q Consensus 254 ~~~~~~~------~~l~~~~~IlV~-TP----~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~---gf~~~i~~il~~l~ 319 (402)
.+..+.. ..+.. ..+.|. +| ..+...+++-......+++||||=.+.|... .....+..|.+.|+
T Consensus 259 l~~~~~~~~~~~~~~l~~-~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~~~~~~~~~~~~~~i~~~Lk 337 (421)
T TIGR03600 259 FNDSDFNRLLNAVDRLSE-KDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMAPTRGRDRNEELGGISRGLK 337 (421)
T ss_pred CCHHHHHHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCCHHHHHHHHHHHHH
Confidence 2222211 12222 234554 33 2333333221111236889999999987531 23345666666665
Q ss_pred hhhcccCCCCceEEEEeec
Q 015712 320 DSALKSNGQGFQTILVTAA 338 (402)
Q Consensus 320 ~~~~~~~~~~~q~i~~SAT 338 (402)
.... .-++.+|++|..
T Consensus 338 ~lAk---e~~i~Vi~lsQl 353 (421)
T TIGR03600 338 ALAK---ELDVPVVLLAQL 353 (421)
T ss_pred HHHH---HhCCcEEEeccc
Confidence 4321 236777777753
No 265
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.32 E-value=0.16 Score=50.56 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=17.0
Q ss_pred CCcEEEEcCCCCChhhHhHHHH
Q 015712 178 GKSVVLSSGSGSGRTLAYLLPL 199 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~~lpi 199 (402)
++-++++||+|+|||....--+
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA 227 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLG 227 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 5668999999999998654333
No 266
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=95.31 E-value=0.23 Score=54.30 Aligned_cols=23 Identities=26% Similarity=0.544 Sum_probs=16.4
Q ss_pred EEEEcCCCCChhhHhHHHHHHHHH
Q 015712 181 VVLSSGSGSGRTLAYLLPLVQMLR 204 (402)
Q Consensus 181 vli~a~TGsGKTla~~lpil~~l~ 204 (402)
++|.|+||+|||++.- .++..+.
T Consensus 784 LYIyG~PGTGKTATVK-~VLrELq 806 (1164)
T PTZ00112 784 LYISGMPGTGKTATVY-SVIQLLQ 806 (1164)
T ss_pred EEEECCCCCCHHHHHH-HHHHHHH
Confidence 3599999999998753 3444443
No 267
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.31 E-value=0.1 Score=56.39 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=17.4
Q ss_pred CCcEEEEcCCCCChhhHhHHHHH
Q 015712 178 GKSVVLSSGSGSGRTLAYLLPLV 200 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~~lpil 200 (402)
|+-+.++||||+|||.+...-+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHh
Confidence 44578999999999987644443
No 268
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=95.30 E-value=0.13 Score=46.22 Aligned_cols=104 Identities=15% Similarity=0.149 Sum_probs=60.0
Q ss_pred CCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhccCCc-ceeeccCCCCh
Q 015712 178 GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARL-DSSMENGGVSS 256 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~-~v~~~~gg~~~ 256 (402)
|+=.+++||..||||...+--+-.... .+.++++..|-..- ..+. .+....|-..
T Consensus 4 g~l~~i~gpM~SGKT~eLl~r~~~~~~----------~g~~v~vfkp~iD~-------------R~~~~~V~Sr~G~~~- 59 (201)
T COG1435 4 GWLEFIYGPMFSGKTEELLRRARRYKE----------AGMKVLVFKPAIDT-------------RYGVGKVSSRIGLSS- 59 (201)
T ss_pred EEEEEEEccCcCcchHHHHHHHHHHHH----------cCCeEEEEeccccc-------------ccccceeeeccCCcc-
Confidence 444689999999999854333322222 47788888874221 0011 1222222211
Q ss_pred HHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCCCHHHHHHHHHH
Q 015712 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNP 317 (402)
Q Consensus 257 ~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~gf~~~i~~il~~ 317 (402)
..++|-.+..+.+.+......+. +++|.||||+-+ +...-.++..+...
T Consensus 60 ----------~A~~i~~~~~i~~~i~~~~~~~~-~~~v~IDEaQF~-~~~~v~~l~~lad~ 108 (201)
T COG1435 60 ----------EAVVIPSDTDIFDEIAALHEKPP-VDCVLIDEAQFF-DEELVYVLNELADR 108 (201)
T ss_pred ----------cceecCChHHHHHHHHhcccCCC-cCEEEEehhHhC-CHHHHHHHHHHHhh
Confidence 34677788888888876443332 889999999954 34334444444444
No 269
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=95.29 E-value=0.33 Score=45.72 Aligned_cols=144 Identities=17% Similarity=0.121 Sum_probs=76.7
Q ss_pred CCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCc---hHHHHHHHHHHHHhhccCCcceeeccCCC
Q 015712 178 GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTT---EESADQGFHMAKFISHCARLDSSMENGGV 254 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~Pt---reLa~Qi~~~~~~l~~~~~~~v~~~~gg~ 254 (402)
|.=+++.|++|.|||... +-+...+... .+..++|++.- .+++..+. +...++...-+..+.
T Consensus 19 g~L~vi~a~pg~GKT~~~-l~ia~~~a~~--------~~~~vly~SlEm~~~~l~~R~l------a~~s~v~~~~i~~g~ 83 (259)
T PF03796_consen 19 GELTVIAARPGVGKTAFA-LQIALNAALN--------GGYPVLYFSLEMSEEELAARLL------ARLSGVPYNKIRSGD 83 (259)
T ss_dssp T-EEEEEESTTSSHHHHH-HHHHHHHHHT--------TSSEEEEEESSS-HHHHHHHHH------HHHHTSTHHHHHCCG
T ss_pred CcEEEEEecccCCchHHH-HHHHHHHHHh--------cCCeEEEEcCCCCHHHHHHHHH------HHhhcchhhhhhccc
Confidence 445899999999999654 4444444431 24678888752 33333222 122233333233332
Q ss_pred ChHHHHH-------HhcCCccEEEeCch----hhHHHhhcCCCCCCCeeEEEEcCCCccccC----CCHHHHHHHHHHhh
Q 015712 255 SSKALED-------VSNAPIGMLIATPS----EVLQHIEDRNVSCDDIRYVVLDEADTLFDR----GFGPEISKILNPLK 319 (402)
Q Consensus 255 ~~~~~~~-------~l~~~~~IlV~TP~----~l~~~l~~~~~~l~~l~~lVlDEad~~l~~----gf~~~i~~il~~l~ 319 (402)
....... .+....-.+..+|. .+...+.........+++||||=+|.|-.. +....+..+...|+
T Consensus 84 l~~~e~~~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk 163 (259)
T PF03796_consen 84 LSDEEFERLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELK 163 (259)
T ss_dssp CHHHHHHHHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 2222211 22232223344444 444444332222278999999999987653 35677777766665
Q ss_pred hhhcccCCCCceEEEEeecc
Q 015712 320 DSALKSNGQGFQTILVTAAI 339 (402)
Q Consensus 320 ~~~~~~~~~~~q~i~~SATl 339 (402)
..... .++.+|++|..-
T Consensus 164 ~lA~~---~~i~vi~~sQln 180 (259)
T PF03796_consen 164 ALAKE---LNIPVIALSQLN 180 (259)
T ss_dssp HHHHH---HTSEEEEEEEBS
T ss_pred HHHHH---cCCeEEEccccC
Confidence 43311 267788777643
No 270
>CHL00181 cbbX CbbX; Provisional
Probab=95.22 E-value=0.22 Score=47.99 Aligned_cols=18 Identities=22% Similarity=0.484 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCCChhhHh
Q 015712 178 GKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~ 195 (402)
|.++++.||+|+|||...
T Consensus 59 ~~~ill~G~pGtGKT~lA 76 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVA 76 (287)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 567999999999999865
No 271
>PRK05973 replicative DNA helicase; Provisional
Probab=95.22 E-value=0.15 Score=47.57 Aligned_cols=83 Identities=14% Similarity=0.180 Sum_probs=47.1
Q ss_pred cCCCCHHHHHHHHHCCCCC----------CcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCC
Q 015712 145 ELGLKAEMIKAVEKMGLFV----------PSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKP 214 (402)
Q Consensus 145 ~l~l~~~l~~~l~~~g~~~----------pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~ 214 (402)
..++++.+=+.-.+-||.. +||... ...-+..|.-++|.|++|+|||...+--+.+.+.
T Consensus 22 ~~~~~~~~~~~a~~~g~~~w~~~~~~~~~~~p~~~-l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~---------- 90 (237)
T PRK05973 22 NIPLHEALDRIAAEEGFSSWSLLAAKAAATTPAEE-LFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMK---------- 90 (237)
T ss_pred CCcHHHHHHHHHHHhccchHHHHHHhccCCCCHHH-hcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHh----------
Confidence 3344455555555556643 444222 2223445677999999999999765444444332
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHHh
Q 015712 215 MHPRAIVLCTTEESADQGFHMAKFI 239 (402)
Q Consensus 215 ~~~~~Lvl~PtreLa~Qi~~~~~~l 239 (402)
.|..++|++- .+-..|+...+..+
T Consensus 91 ~Ge~vlyfSl-Ees~~~i~~R~~s~ 114 (237)
T PRK05973 91 SGRTGVFFTL-EYTEQDVRDRLRAL 114 (237)
T ss_pred cCCeEEEEEE-eCCHHHHHHHHHHc
Confidence 3556777753 33356666666554
No 272
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.21 E-value=0.1 Score=50.68 Aligned_cols=40 Identities=25% Similarity=0.365 Sum_probs=25.4
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCC--cE-EEEcCCCCChhhH
Q 015712 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGK--SV-VLSSGSGSGRTLA 194 (402)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g~--dv-li~a~TGsGKTla 194 (402)
..+|+++-.++.+.+.+... +..|+ ++ ++.||+|+|||..
T Consensus 17 P~~~~~~~~~~~~~~~l~~~---------------~~~~~~~~~lll~G~~G~GKT~l 59 (316)
T PHA02544 17 PSTIDECILPAADKETFKSI---------------VKKGRIPNMLLHSPSPGTGKTTV 59 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHH---------------HhcCCCCeEEEeeCcCCCCHHHH
Confidence 35677777777666555432 12332 44 4489999999975
No 273
>PRK04195 replication factor C large subunit; Provisional
Probab=95.18 E-value=0.18 Score=52.22 Aligned_cols=44 Identities=16% Similarity=0.215 Sum_probs=27.4
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHc---CCcEEEEcCCCCChhhHh
Q 015712 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLN---GKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~---g~dvli~a~TGsGKTla~ 195 (402)
..+|+++-.++...+.|... +..... .+.+++.||+|+|||...
T Consensus 10 P~~l~dlvg~~~~~~~l~~~------------l~~~~~g~~~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREW------------IESWLKGKPKKALLLYGPPGVGKTSLA 56 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHH------------HHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 34567776666666555432 000012 467999999999999753
No 274
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=95.18 E-value=0.12 Score=55.52 Aligned_cols=65 Identities=23% Similarity=0.272 Sum_probs=50.8
Q ss_pred CCcHHHHHHHHHHHcC-----CcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHH
Q 015712 163 VPSEIQCVGIPAVLNG-----KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK 237 (402)
Q Consensus 163 ~pt~iQ~~~i~~il~g-----~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~ 237 (402)
.|+..|..++..+..+ +..++.|.+|+||++.+. .++.. .+..+|||+|+...|.|++..+.
T Consensus 12 ~~~~~Q~~ai~~l~~~~~~~~~~~ll~Gl~gs~ka~lia-~l~~~------------~~r~vLIVt~~~~~A~~l~~dL~ 78 (652)
T PRK05298 12 KPAGDQPQAIEELVEGIEAGEKHQTLLGVTGSGKTFTMA-NVIAR------------LQRPTLVLAHNKTLAAQLYSEFK 78 (652)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcEEEEcCCCcHHHHHHH-HHHHH------------hCCCEEEEECCHHHHHHHHHHHH
Confidence 7999999999887543 257799999999998743 22221 23469999999999999999998
Q ss_pred Hhh
Q 015712 238 FIS 240 (402)
Q Consensus 238 ~l~ 240 (402)
.+.
T Consensus 79 ~~~ 81 (652)
T PRK05298 79 EFF 81 (652)
T ss_pred Hhc
Confidence 874
No 275
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.13 E-value=0.34 Score=39.85 Aligned_cols=14 Identities=29% Similarity=0.603 Sum_probs=12.5
Q ss_pred EEEEcCCCCChhhH
Q 015712 181 VVLSSGSGSGRTLA 194 (402)
Q Consensus 181 vli~a~TGsGKTla 194 (402)
+++.||.|+|||..
T Consensus 1 ill~G~~G~GKT~l 14 (132)
T PF00004_consen 1 ILLHGPPGTGKTTL 14 (132)
T ss_dssp EEEESSTTSSHHHH
T ss_pred CEEECcCCCCeeHH
Confidence 68999999999975
No 276
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=95.12 E-value=0.06 Score=56.72 Aligned_cols=157 Identities=14% Similarity=0.051 Sum_probs=86.3
Q ss_pred CCcHHHHHHHHHHHcC--CcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHH-HHHHHh
Q 015712 163 VPSEIQCVGIPAVLNG--KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGF-HMAKFI 239 (402)
Q Consensus 163 ~pt~iQ~~~i~~il~g--~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~-~~~~~l 239 (402)
..+|+|.+.+.++... +.|+++.++.+|||.+.+..+...+.. ....+|++.||.++|.... ..+.-+
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~---------~P~~~l~v~Pt~~~a~~~~~~rl~Pm 86 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQ---------DPGPMLYVQPTDDAAKDFSKERLDPM 86 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEe---------CCCCEEEEEEcHHHHHHHHHHHHHHH
Confidence 5678888887777653 579999999999999554443333332 3567999999999998854 344444
Q ss_pred hccCCcceeeccC----CCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccC--CCHHHHHH
Q 015712 240 SHCARLDSSMENG----GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDR--GFGPEISK 313 (402)
Q Consensus 240 ~~~~~~~v~~~~g----g~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~--gf~~~i~~ 313 (402)
......--..+.. ..........+. +..|.++..+.- ..+.-..+++|++||+|.+-+. +-++-+..
T Consensus 87 i~~sp~l~~~~~~~~~~~~~~t~~~k~f~-gg~l~~~ga~S~------~~l~s~~~r~~~~DEvD~~p~~~~~eGdp~~l 159 (557)
T PF05876_consen 87 IRASPVLRRKLSPSKSRDSGNTILYKRFP-GGFLYLVGANSP------SNLRSRPARYLLLDEVDRYPDDVGGEGDPVEL 159 (557)
T ss_pred HHhCHHHHHHhCchhhcccCCchhheecC-CCEEEEEeCCCC------cccccCCcCEEEEechhhccccCccCCCHHHH
Confidence 3332211111211 000000111122 333444332211 1233456899999999998432 24555655
Q ss_pred HHHHhhhhhcccCCCCceEEEEeeccCc
Q 015712 314 ILNPLKDSALKSNGQGFQTILVTAAIAE 341 (402)
Q Consensus 314 il~~l~~~~~~~~~~~~q~i~~SATl~~ 341 (402)
...+.... .....+++.+|.+.
T Consensus 160 a~~R~~tf------~~~~K~~~~STPt~ 181 (557)
T PF05876_consen 160 AEKRTKTF------GSNRKILRISTPTI 181 (557)
T ss_pred HHHHHhhh------ccCcEEEEeCCCCC
Confidence 55555432 13345555555543
No 277
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.08 E-value=0.18 Score=52.42 Aligned_cols=20 Identities=25% Similarity=0.471 Sum_probs=16.7
Q ss_pred cCCcEEEEcCCCCChhhHhH
Q 015712 177 NGKSVVLSSGSGSGRTLAYL 196 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~~ 196 (402)
.|+.++++|+||+|||....
T Consensus 349 ~G~vIaLVGPtGvGKTTtaa 368 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIA 368 (559)
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46778999999999998753
No 278
>PRK08506 replicative DNA helicase; Provisional
Probab=95.06 E-value=0.32 Score=50.28 Aligned_cols=149 Identities=15% Similarity=0.148 Sum_probs=73.8
Q ss_pred cCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeec-cCCCC
Q 015712 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSME-NGGVS 255 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~-~gg~~ 255 (402)
.|.-+++.|++|.|||. |++-+...+.. .+..++|++. ..-+.|+...+-. ...++...-+ .|..+
T Consensus 191 ~G~LivIaarpg~GKT~-fal~ia~~~~~---------~g~~V~~fSl-EMs~~ql~~Rlla--~~s~v~~~~i~~~~l~ 257 (472)
T PRK08506 191 KGDLIIIAARPSMGKTT-LCLNMALKALN---------QDKGVAFFSL-EMPAEQLMLRMLS--AKTSIPLQNLRTGDLD 257 (472)
T ss_pred CCceEEEEcCCCCChHH-HHHHHHHHHHh---------cCCcEEEEeC-cCCHHHHHHHHHH--HhcCCCHHHHhcCCCC
Confidence 34568889999999996 44544444432 2445666643 2333444433322 1223332222 23333
Q ss_pred hHHHH------HHhcCCccEEEe-----CchhhHHHhhcCCCCCCCeeEEEEcCCCccccCC----CHHHHHHHHHHhhh
Q 015712 256 SKALE------DVSNAPIGMLIA-----TPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRG----FGPEISKILNPLKD 320 (402)
Q Consensus 256 ~~~~~------~~l~~~~~IlV~-----TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~g----f~~~i~~il~~l~~ 320 (402)
..... ..+.. ..+.|- |+..+...+++-......+++||||=.+.|-..+ ...++..|.+.|+.
T Consensus 258 ~~e~~~~~~a~~~l~~-~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~~~~~~~~r~~ev~~isr~LK~ 336 (472)
T PRK08506 258 DDEWERLSDACDELSK-KKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMSGSGNFKDRHLQISEISRGLKL 336 (472)
T ss_pred HHHHHHHHHHHHHHHc-CCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhccCCCCCCCHHHHHHHHHHHHHH
Confidence 22221 12222 234443 3334433333211112358999999999775332 23456666666553
Q ss_pred hhcccCCCCceEEEEeeccCchh
Q 015712 321 SALKSNGQGFQTILVTAAIAEML 343 (402)
Q Consensus 321 ~~~~~~~~~~q~i~~SATl~~~v 343 (402)
.. ..-++.+|++|. ++..+
T Consensus 337 lA---kel~ipVi~lsQ-LnR~~ 355 (472)
T PRK08506 337 LA---RELDIPIIALSQ-LNRSL 355 (472)
T ss_pred HH---HHhCCcEEEEee-cCcch
Confidence 32 113677887774 44433
No 279
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.05 E-value=0.55 Score=45.88 Aligned_cols=62 Identities=18% Similarity=0.242 Sum_probs=32.1
Q ss_pred CCeeEEEEcCCCcccc-CCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhh
Q 015712 289 DDIRYVVLDEADTLFD-RGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLME 352 (402)
Q Consensus 289 ~~l~~lVlDEad~~l~-~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~ 352 (402)
.+.++||||=+-++-. .....++..+.+.+... -+..+.--++.++||...+....+..|..
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~--~~~~p~~~~LVl~a~~g~~~~~~a~~f~~ 257 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKA--DPDAPHEVLLVLDATTGQNALSQAKAFHE 257 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhh--cCCCCceEEEEEECCCChHHHHHHHHHHh
Confidence 4456777776665421 12344555555443210 01123445777888876655555566654
No 280
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.02 E-value=0.094 Score=51.28 Aligned_cols=65 Identities=22% Similarity=0.242 Sum_probs=43.4
Q ss_pred HHHHCCCCCCcHHHHHHHHHH-HcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHH
Q 015712 155 AVEKMGLFVPSEIQCVGIPAV-LNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESA 229 (402)
Q Consensus 155 ~l~~~g~~~pt~iQ~~~i~~i-l~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa 229 (402)
.+.+.|. .++.|...+..+ ..+.++|++|+||||||.. +-.++..+... ...-+++++=.+.||.
T Consensus 122 ~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl-l~aL~~~i~~~-------~~~~rivtiEd~~El~ 187 (323)
T PRK13833 122 DYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTL-ANAVIAEIVAS-------APEDRLVILEDTAEIQ 187 (323)
T ss_pred HHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHHhcC-------CCCceEEEecCCcccc
Confidence 3445555 566777776654 4577999999999999974 34555555321 1244777777788864
No 281
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=94.99 E-value=0.15 Score=49.70 Aligned_cols=16 Identities=31% Similarity=0.528 Sum_probs=14.3
Q ss_pred cEEEEcCCCCChhhHh
Q 015712 180 SVVLSSGSGSGRTLAY 195 (402)
Q Consensus 180 dvli~a~TGsGKTla~ 195 (402)
.+++.||+|+|||...
T Consensus 38 ~lll~Gp~GtGKT~la 53 (337)
T PRK12402 38 HLLVQGPPGSGKTAAV 53 (337)
T ss_pred eEEEECCCCCCHHHHH
Confidence 7999999999999754
No 282
>PRK13342 recombination factor protein RarA; Reviewed
Probab=94.93 E-value=0.2 Score=50.84 Aligned_cols=16 Identities=31% Similarity=0.459 Sum_probs=14.2
Q ss_pred cEEEEcCCCCChhhHh
Q 015712 180 SVVLSSGSGSGRTLAY 195 (402)
Q Consensus 180 dvli~a~TGsGKTla~ 195 (402)
++++.||+|+|||...
T Consensus 38 ~ilL~GppGtGKTtLA 53 (413)
T PRK13342 38 SMILWGPPGTGKTTLA 53 (413)
T ss_pred eEEEECCCCCCHHHHH
Confidence 7999999999999754
No 283
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.91 E-value=0.41 Score=48.70 Aligned_cols=86 Identities=14% Similarity=0.199 Sum_probs=42.8
Q ss_pred cEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEE-cCch-HHHHHHHHHHHHhhccCCcceeeccCCCChH
Q 015712 180 SVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVL-CTTE-ESADQGFHMAKFISHCARLDSSMENGGVSSK 257 (402)
Q Consensus 180 dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl-~Ptr-eLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~ 257 (402)
-++++|++|+|||....--+.. +... .+.+++++ +-++ .-|.+ .+..++...++.+.....+.+..
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~-l~~~--------~g~kV~lV~~D~~R~~a~~---QL~~~a~~~gvp~~~~~~~~~P~ 168 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYY-LKKK--------QGKKVLLVACDLYRPAAIE---QLKVLGQQVGVPVFALGKGQSPV 168 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHH-HHHh--------CCCeEEEEeccccchHHHH---HHHHHHHhcCCceEecCCCCCHH
Confidence 4889999999999875333332 2211 24445444 3333 22222 23333344455544433323322
Q ss_pred HH-----HHHhcCCcc-EEEeCchhh
Q 015712 258 AL-----EDVSNAPIG-MLIATPSEV 277 (402)
Q Consensus 258 ~~-----~~~l~~~~~-IlV~TP~~l 277 (402)
.. ......+++ |||-|||++
T Consensus 169 ~i~~~al~~~~~~~~DvVIIDTaGr~ 194 (428)
T TIGR00959 169 EIARRALEYAKENGFDVVIVDTAGRL 194 (428)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 11 112244565 778899976
No 284
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.91 E-value=0.4 Score=44.54 Aligned_cols=53 Identities=6% Similarity=0.038 Sum_probs=33.0
Q ss_pred HcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHh
Q 015712 176 LNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 239 (402)
Q Consensus 176 l~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l 239 (402)
..|.-+++.+++|+|||...+--+.. +.. .+.++++++ +.+-..+..+.+..+
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~-~~~---------~g~~~~yi~-~e~~~~~~~~~~~~~ 74 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYG-FLQ---------NGYSVSYVS-TQLTTTEFIKQMMSL 74 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH-HHh---------CCCcEEEEe-CCCCHHHHHHHHHHh
Confidence 34778999999999999764333333 322 356778887 444445544544443
No 285
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=94.90 E-value=0.32 Score=46.70 Aligned_cols=18 Identities=17% Similarity=0.342 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCCChhhHh
Q 015712 178 GKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~ 195 (402)
+.++++.||+|||||.+.
T Consensus 58 ~~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVA 75 (284)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 558999999999999764
No 286
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=94.88 E-value=0.07 Score=57.50 Aligned_cols=68 Identities=12% Similarity=0.043 Sum_probs=50.6
Q ss_pred CcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHh
Q 015712 164 PSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 239 (402)
Q Consensus 164 pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l 239 (402)
+++-|.+++.+ .+.+++|.|+.|||||.+.+-=+...+.... ....++|+|+.|+.-|.++.+.+...
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~------~~p~~IL~vTFt~~Aa~em~~Rl~~~ 69 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCG------YKARNIAAVTFTNKAAREMKERVAKT 69 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcC------CCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 67889888754 3468999999999999886555555443211 13457999999999999988877654
No 287
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=94.84 E-value=0.39 Score=50.33 Aligned_cols=132 Identities=12% Similarity=0.165 Sum_probs=87.9
Q ss_pred CcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHH
Q 015712 179 KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258 (402)
Q Consensus 179 ~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~ 258 (402)
+-.+.--|--.|||+ |+.|++..++.. -.+.++.|++.-+.-++-++..+...... ++|.....
T Consensus 203 kaTVFLVPRRHGKTW-f~VpiIsllL~s-------~~gI~IGYvAHqKhvs~~Vf~EI~~~lrr-------wF~~~~vi- 266 (668)
T PHA03372 203 KATVFLVPRRHGKTW-FIIPIISFLLKN-------IIGISIGYVAHQKHVSQFVLKEVEFRCRR-------MFPRKHTI- 266 (668)
T ss_pred cceEEEecccCCcee-hHHHHHHHHHHh-------hcCceEEEEeeHHHHHHHHHHHHHHHHhh-------hcCcccee-
Confidence 457888899999996 678999988873 36889999999998888877766532221 11111110
Q ss_pred HHHHhcCCccEEEeCchhh-----HHHhhcCCCCCCCeeEEEEcCCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEE
Q 015712 259 LEDVSNAPIGMLIATPSEV-----LQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTI 333 (402)
Q Consensus 259 ~~~~l~~~~~IlV~TP~~l-----~~~l~~~~~~l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i 333 (402)
-.++-.|.+.-||.= ......+.+.-+...+++|||||-+ -.+.+..|+..|.. .++.+|
T Consensus 267 ----~~k~~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI----~~~a~~tilgfm~q-------~~~KiI 331 (668)
T PHA03372 267 ----ENKDNVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFI----KKDAFNTILGFLAQ-------NTTKII 331 (668)
T ss_pred ----eecCcEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhcc----CHHHHHHhhhhhcc-------cCceEE
Confidence 011223555555432 1112234455577899999999976 46678888888864 588999
Q ss_pred EEeeccCc
Q 015712 334 LVTAAIAE 341 (402)
Q Consensus 334 ~~SATl~~ 341 (402)
..|.|-+.
T Consensus 332 fISS~Nsg 339 (668)
T PHA03372 332 FISSTNTT 339 (668)
T ss_pred EEeCCCCC
Confidence 99998643
No 288
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=94.81 E-value=0.27 Score=48.08 Aligned_cols=44 Identities=16% Similarity=0.184 Sum_probs=32.0
Q ss_pred CCCCcHHHHHHHHHHH----cCC---cEEEEcCCCCChhhHhHHHHHHHHHh
Q 015712 161 LFVPSEIQCVGIPAVL----NGK---SVVLSSGSGSGRTLAYLLPLVQMLRR 205 (402)
Q Consensus 161 ~~~pt~iQ~~~i~~il----~g~---dvli~a~TGsGKTla~~lpil~~l~~ 205 (402)
+..++|||..+|..+. .|+ -+++.||.|+||+... ..+...++.
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA-~~lA~~LlC 52 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVA-LALAEHVLA 52 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHH-HHHHHHHhC
Confidence 4578999999988765 344 4899999999998643 444555543
No 289
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.80 E-value=0.73 Score=47.70 Aligned_cols=18 Identities=33% Similarity=0.499 Sum_probs=15.2
Q ss_pred CcEEEEcCCCCChhhHhH
Q 015712 179 KSVVLSSGSGSGRTLAYL 196 (402)
Q Consensus 179 ~dvli~a~TGsGKTla~~ 196 (402)
+.+|++||.|+|||.+..
T Consensus 36 ha~Lf~Gp~G~GKTT~Ar 53 (491)
T PRK14964 36 QSILLVGASGVGKTTCAR 53 (491)
T ss_pred ceEEEECCCCccHHHHHH
Confidence 369999999999998653
No 290
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=94.73 E-value=0.068 Score=58.15 Aligned_cols=71 Identities=17% Similarity=0.125 Sum_probs=52.1
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhh
Q 015712 162 FVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 240 (402)
Q Consensus 162 ~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~ 240 (402)
..+++-|++++.+ .+..++|.|..|||||.+..-=+. ++.... .....++|+|+-|+..|..+...+..+.
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria-~Li~~~-----~v~p~~IL~lTFTnkAA~em~~Rl~~~~ 73 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIA-WLLSVE-----NASPHSIMAVTFTNKAAAEMRHRIGALL 73 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHH-HHHHcC-----CCCHHHeEeeeccHHHHHHHHHHHHHHh
Confidence 4588999998864 345799999999999988544443 333321 1134589999999999999888887654
No 291
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.69 E-value=0.41 Score=48.43 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=17.1
Q ss_pred CcEEEEcCCCCChhhHhHHHHHH
Q 015712 179 KSVVLSSGSGSGRTLAYLLPLVQ 201 (402)
Q Consensus 179 ~dvli~a~TGsGKTla~~lpil~ 201 (402)
.-++++||+|+|||....--+..
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 34789999999999876444433
No 292
>PHA00729 NTP-binding motif containing protein
Probab=94.69 E-value=0.29 Score=45.29 Aligned_cols=15 Identities=40% Similarity=0.496 Sum_probs=13.7
Q ss_pred cEEEEcCCCCChhhH
Q 015712 180 SVVLSSGSGSGRTLA 194 (402)
Q Consensus 180 dvli~a~TGsGKTla 194 (402)
++++.|++|+|||..
T Consensus 19 nIlItG~pGvGKT~L 33 (226)
T PHA00729 19 SAVIFGKQGSGKTTY 33 (226)
T ss_pred EEEEECCCCCCHHHH
Confidence 799999999999964
No 293
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.67 E-value=0.15 Score=49.34 Aligned_cols=68 Identities=21% Similarity=0.315 Sum_probs=44.0
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHH-HHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHH
Q 015712 152 MIKAVEKMGLFVPSEIQCVGIPA-VLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESA 229 (402)
Q Consensus 152 l~~~l~~~g~~~pt~iQ~~~i~~-il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa 229 (402)
-+..|.+.|. +++-|...+.. +..+++++++|+||||||.. +-.++..+... ....+++++-.+.|+.
T Consensus 107 tl~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~al~~~i~~~-------~~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 107 TLDDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTL-ANALLAEIAKN-------DPTDRVVIIEDTRELQ 175 (299)
T ss_pred CHHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHhhcc-------CCCceEEEECCchhhc
Confidence 3455556664 44555555554 45577999999999999975 34455554331 1245788888888874
No 294
>PRK10689 transcription-repair coupling factor; Provisional
Probab=94.66 E-value=0.33 Score=55.37 Aligned_cols=93 Identities=13% Similarity=0.231 Sum_probs=68.5
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHh----cCCccEEEeCchhhHHHhhcCCCCCCC
Q 015712 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDD 290 (402)
Q Consensus 215 ~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~l~~~l~~~~~~l~~ 290 (402)
++.+++|+||+++-+..++..+.... .++++.+++|+.+...+...+ ....+|||||. +-..++++.+
T Consensus 808 r~gqv~vf~n~i~~ie~la~~L~~~~--p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTd------IierGIDIP~ 879 (1147)
T PRK10689 808 RGGQVYYLYNDVENIQKAAERLAELV--PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT------IIETGIDIPT 879 (1147)
T ss_pred cCCeEEEEECCHHHHHHHHHHHHHhC--CCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECc------hhhccccccc
Confidence 35689999999998888888777653 356888999999887665543 35789999995 2345889999
Q ss_pred eeEEEEcCCCccccCCCHHHHHHHHHHhh
Q 015712 291 IRYVVLDEADTLFDRGFGPEISKILNPLK 319 (402)
Q Consensus 291 l~~lVlDEad~~l~~gf~~~i~~il~~l~ 319 (402)
+++||++.+|++ + ..++.++..+..
T Consensus 880 v~~VIi~~ad~f---g-laq~~Qr~GRvG 904 (1147)
T PRK10689 880 ANTIIIERADHF---G-LAQLHQLRGRVG 904 (1147)
T ss_pred CCEEEEecCCCC---C-HHHHHHHhhccC
Confidence 999999999864 2 234444444443
No 295
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.66 E-value=0.5 Score=44.50 Aligned_cols=33 Identities=15% Similarity=0.245 Sum_probs=23.6
Q ss_pred CCcHHHHHHHHHHH----cCC-cEEEEcCCCCChhhHh
Q 015712 163 VPSEIQCVGIPAVL----NGK-SVVLSSGSGSGRTLAY 195 (402)
Q Consensus 163 ~pt~iQ~~~i~~il----~g~-dvli~a~TGsGKTla~ 195 (402)
.+++.+..++..+. .+. .+++.|++|+|||...
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH
Confidence 55666666666543 333 5899999999999764
No 296
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=94.65 E-value=0.38 Score=47.26 Aligned_cols=41 Identities=15% Similarity=0.025 Sum_probs=29.7
Q ss_pred CCcHHHHHHHHHHHcC-C---cEEEEcCCCCChhhHhHHHHHHHHH
Q 015712 163 VPSEIQCVGIPAVLNG-K---SVVLSSGSGSGRTLAYLLPLVQMLR 204 (402)
Q Consensus 163 ~pt~iQ~~~i~~il~g-~---dvli~a~TGsGKTla~~lpil~~l~ 204 (402)
..+|||...|..+... + -+++.||.|+|||... ..+...+.
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A-~~~A~~ll 47 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALA-ERLAAALL 47 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHH-HHHHHHHc
Confidence 3579999999987753 2 4899999999999653 33444444
No 297
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.64 E-value=0.31 Score=48.72 Aligned_cols=104 Identities=16% Similarity=0.283 Sum_probs=57.4
Q ss_pred cCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCCh
Q 015712 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSS 256 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~ 256 (402)
.|.-+++.|++|+|||...+. ++..+.. .+.+++|+.-. +-..|+...+..+. +..
T Consensus 81 ~GslvLI~G~pG~GKStLllq-~a~~~a~---------~g~~VlYvs~E-Es~~qi~~Ra~rlg----~~~--------- 136 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQ-VAARLAK---------RGGKVLYVSGE-ESPEQIKLRADRLG----IST--------- 136 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHH-HHHHHHh---------cCCeEEEEECC-cCHHHHHHHHHHcC----CCc---------
Confidence 356689999999999975433 3333332 34578888653 44556555554442 110
Q ss_pred HHHHHHhcCCccEEEeC---chhhHHHhhcCCCCCCCeeEEEEcCCCccccC------CCHHHHHHHHHHhh
Q 015712 257 KALEDVSNAPIGMLIAT---PSEVLQHIEDRNVSCDDIRYVVLDEADTLFDR------GFGPEISKILNPLK 319 (402)
Q Consensus 257 ~~~~~~l~~~~~IlV~T---P~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~------gf~~~i~~il~~l~ 319 (402)
.++.+.. .+.+.+.+.. .+.++||||+++.+... |...+++.++..|.
T Consensus 137 ----------~~l~l~~e~~le~I~~~i~~-----~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~ 193 (372)
T cd01121 137 ----------ENLYLLAETNLEDILASIEE-----LKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELM 193 (372)
T ss_pred ----------ccEEEEccCcHHHHHHHHHh-----cCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHH
Confidence 0122221 2334444432 35789999999987532 23455655554443
No 298
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=94.62 E-value=0.15 Score=58.83 Aligned_cols=122 Identities=16% Similarity=0.164 Sum_probs=75.3
Q ss_pred CcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhc-c
Q 015712 164 PSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH-C 242 (402)
Q Consensus 164 pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~-~ 242 (402)
.|+-|..+|. ..|++++|.|.-|||||.+.+-=++..+... ...-++|+|+=|+.-|..+...+..... .
T Consensus 2 ~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~-------~~~~~il~~tFt~~aa~e~~~ri~~~l~~~ 72 (1232)
T TIGR02785 2 WTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRG-------VDIDRLLVVTFTNAAAREMKERIEEALQKA 72 (1232)
T ss_pred CCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcC-------CCHhhEEEEeccHHHHHHHHHHHHHHHHHH
Confidence 5889999997 4688999999999999998766666666532 1224699999999999887776655322 1
Q ss_pred CCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCe--eEEEEcCCCc
Q 015712 243 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDI--RYVVLDEADT 301 (402)
Q Consensus 243 ~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l--~~lVlDEad~ 301 (402)
..-. .......+.+..-...-|+|-..++..+-+.....-++ .+=|.||...
T Consensus 73 ~~~~-------p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 73 LQQE-------PNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred HhcC-------chhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 1100 00111112222223466899988876654332211112 3456787764
No 299
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=94.59 E-value=0.058 Score=56.60 Aligned_cols=44 Identities=25% Similarity=0.382 Sum_probs=37.3
Q ss_pred CCcHHHHHHHHHHH----cCCcEEEEcCCCCChhhHhHHHHHHHHHhh
Q 015712 163 VPSEIQCVGIPAVL----NGKSVVLSSGSGSGRTLAYLLPLVQMLRRD 206 (402)
Q Consensus 163 ~pt~iQ~~~i~~il----~g~dvli~a~TGsGKTla~~lpil~~l~~~ 206 (402)
+|+.||...+..+. .|+=-|+.+|||+|||++.+=..+.+|...
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~~~ 62 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLRDF 62 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHHHh
Confidence 79999998876644 689889999999999999888888887654
No 300
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.54 E-value=0.17 Score=51.21 Aligned_cols=62 Identities=11% Similarity=0.102 Sum_probs=33.2
Q ss_pred cCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhccCCcce
Q 015712 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDS 247 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v 247 (402)
.|.-+.++||||+|||.....-+-..+... ....-.++.+.+...+. ...+..++...++.+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~-------~~~~v~~i~~d~~riga--lEQL~~~a~ilGvp~ 251 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRH-------GADKVALLTTDSYRIGG--HEQLRIYGKLLGVSV 251 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhc-------CCCeEEEEecCCcchhH--HHHHHHHHHHcCCce
Confidence 355689999999999987654333332221 01224566666644332 223444444445443
No 301
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=94.50 E-value=0.19 Score=52.26 Aligned_cols=95 Identities=18% Similarity=0.118 Sum_probs=61.8
Q ss_pred ccCCCCHHHH-HHHHHCCCCCCc----HHHHHHHHHHHc--CCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCC
Q 015712 144 QELGLKAEMI-KAVEKMGLFVPS----EIQCVGIPAVLN--GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMH 216 (402)
Q Consensus 144 ~~l~l~~~l~-~~l~~~g~~~pt----~iQ~~~i~~il~--g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~ 216 (402)
.+.++.++++ ..|.+.--..+. -||.+-=..+.. ++-+||+|..|||||.+.+-=+...+...+... .+
T Consensus 185 sd~~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l----~~ 260 (747)
T COG3973 185 SDTGGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPL----QA 260 (747)
T ss_pred cCCchHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhcccccc----cc
Confidence 3455665554 566665333443 345554444443 455999999999999887554444444443221 23
Q ss_pred CeEEEEcCchHHHHHHHHHHHHhhcc
Q 015712 217 PRAIVLCTTEESADQGFHMAKFISHC 242 (402)
Q Consensus 217 ~~~Lvl~PtreLa~Qi~~~~~~l~~~ 242 (402)
..+||+.|.+-+..-+.+++-.++..
T Consensus 261 k~vlvl~PN~vFleYis~VLPeLGe~ 286 (747)
T COG3973 261 KPVLVLGPNRVFLEYISRVLPELGEE 286 (747)
T ss_pred CceEEEcCcHHHHHHHHHhchhhccC
Confidence 34999999999999999999888654
No 302
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.48 E-value=0.6 Score=46.34 Aligned_cols=56 Identities=29% Similarity=0.504 Sum_probs=34.3
Q ss_pred cccccccCCCCHHHHHHHHHCCCC-CC----c----------HHHHHH-----HHHHHcC-----CcEEEEcCCCCChhh
Q 015712 139 VVSSFQELGLKAEMIKAVEKMGLF-VP----S----------EIQCVG-----IPAVLNG-----KSVVLSSGSGSGRTL 193 (402)
Q Consensus 139 ~~~~f~~l~l~~~l~~~l~~~g~~-~p----t----------~iQ~~~-----i~~il~g-----~dvli~a~TGsGKTl 193 (402)
....|+.++....|.++|..-=+. .| . -++..+ +|.+.+| +.+|..||.|+|||+
T Consensus 181 ~~~~f~~~~~d~~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTl 260 (491)
T KOG0738|consen 181 EDKKFDSLGYDADLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTL 260 (491)
T ss_pred ccCCCCcccchHHHHHHHHHHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHH
Confidence 345688888888888877653111 11 0 112222 2334444 579999999999997
Q ss_pred H
Q 015712 194 A 194 (402)
Q Consensus 194 a 194 (402)
.
T Consensus 261 L 261 (491)
T KOG0738|consen 261 L 261 (491)
T ss_pred H
Confidence 3
No 303
>PRK05748 replicative DNA helicase; Provisional
Probab=94.46 E-value=0.62 Score=47.76 Aligned_cols=146 Identities=14% Similarity=0.189 Sum_probs=72.0
Q ss_pred cCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeec-cCCCC
Q 015712 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSME-NGGVS 255 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~-~gg~~ 255 (402)
.|.-+++.|++|+|||. |++-++..+... .+..++|++ ...-..|+...+-. ...++....+ .|...
T Consensus 202 ~G~livIaarpg~GKT~-~al~ia~~~a~~--------~g~~v~~fS-lEms~~~l~~R~l~--~~~~v~~~~i~~~~l~ 269 (448)
T PRK05748 202 PNDLIIVAARPSVGKTA-FALNIAQNVATK--------TDKNVAIFS-LEMGAESLVMRMLC--AEGNIDAQRLRTGQLT 269 (448)
T ss_pred CCceEEEEeCCCCCchH-HHHHHHHHHHHh--------CCCeEEEEe-CCCCHHHHHHHHHH--HhcCCCHHHhhcCCCC
Confidence 34568999999999996 445555443321 244566654 23333444443321 1123322211 23333
Q ss_pred hHHHH------HHhcCCccEEEe-Cc----hhhHHHhhcCCCCCCCeeEEEEcCCCccccCC-----CHHHHHHHHHHhh
Q 015712 256 SKALE------DVSNAPIGMLIA-TP----SEVLQHIEDRNVSCDDIRYVVLDEADTLFDRG-----FGPEISKILNPLK 319 (402)
Q Consensus 256 ~~~~~------~~l~~~~~IlV~-TP----~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~g-----f~~~i~~il~~l~ 319 (402)
..+.. ..+.. ..+.|. +| ..+...+++-.....++++||||=.+.|-..+ ....+..|.+.|+
T Consensus 270 ~~e~~~~~~a~~~l~~-~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~~~~~~~~~r~~~i~~i~~~LK 348 (448)
T PRK05748 270 DDDWPKLTIAMGSLSD-APIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQGSGRSGENRQQEVSEISRSLK 348 (448)
T ss_pred HHHHHHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcCCCCCCCcCHHHHHHHHHHHHH
Confidence 22211 12222 334443 44 33433332211111368999999999874222 2345667766664
Q ss_pred hhhcccCCCCceEEEEeec
Q 015712 320 DSALKSNGQGFQTILVTAA 338 (402)
Q Consensus 320 ~~~~~~~~~~~q~i~~SAT 338 (402)
.... .-++.+|++|..
T Consensus 349 ~lAk---e~~i~vi~lsQl 364 (448)
T PRK05748 349 ALAK---ELKVPVIALSQL 364 (448)
T ss_pred HHHH---HhCCeEEEeccc
Confidence 3221 136777777764
No 304
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.42 E-value=0.29 Score=53.73 Aligned_cols=16 Identities=19% Similarity=0.272 Sum_probs=13.7
Q ss_pred EEEEcCCCCChhhHhH
Q 015712 181 VVLSSGSGSGRTLAYL 196 (402)
Q Consensus 181 vli~a~TGsGKTla~~ 196 (402)
+|++||.|+|||.+..
T Consensus 41 yLFtGPpGtGKTTLAR 56 (944)
T PRK14949 41 YLFTGTRGVGKTSLAR 56 (944)
T ss_pred EEEECCCCCCHHHHHH
Confidence 5899999999998653
No 305
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=94.40 E-value=0.49 Score=48.95 Aligned_cols=97 Identities=20% Similarity=0.281 Sum_probs=74.3
Q ss_pred CCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHh---
Q 015712 187 SGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS--- 263 (402)
Q Consensus 187 TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l--- 263 (402)
.++|++..-++++.+.+... -.|.+||.+-+.+-|.|++..+. .+.++++.+++|+.+.......+
T Consensus 366 vF~gse~~K~lA~rq~v~~g--------~~PP~lIfVQs~eRak~L~~~L~---~~~~i~v~vIh~e~~~~qrde~~~~F 434 (593)
T KOG0344|consen 366 VFCGSEKGKLLALRQLVASG--------FKPPVLIFVQSKERAKQLFEELE---IYDNINVDVIHGERSQKQRDETMERF 434 (593)
T ss_pred eeeecchhHHHHHHHHHhcc--------CCCCeEEEEecHHHHHHHHHHhh---hccCcceeeEecccchhHHHHHHHHH
Confidence 47788887777777766642 57889999999999999888776 45689999999998766654433
Q ss_pred c-CCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCC
Q 015712 264 N-APIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 300 (402)
Q Consensus 264 ~-~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad 300 (402)
+ ....|+|||- ++. +++++.++.+||.++.-
T Consensus 435 R~g~IwvLicTd-----ll~-RGiDf~gvn~VInyD~p 466 (593)
T KOG0344|consen 435 RIGKIWVLICTD-----LLA-RGIDFKGVNLVINYDFP 466 (593)
T ss_pred hccCeeEEEehh-----hhh-ccccccCcceEEecCCC
Confidence 2 3578999994 444 45899999999997764
No 306
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=94.37 E-value=0.14 Score=47.42 Aligned_cols=45 Identities=16% Similarity=0.242 Sum_probs=27.9
Q ss_pred CCCeeEEEEcCCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCc
Q 015712 288 CDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 341 (402)
Q Consensus 288 l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~ 341 (402)
..+.+.+|+||||.|. .|-...+++.++...+ .+++.+...+...
T Consensus 111 ~grhKIiILDEADSMT-~gAQQAlRRtMEiyS~--------ttRFalaCN~s~K 155 (333)
T KOG0991|consen 111 PGRHKIIILDEADSMT-AGAQQALRRTMEIYSN--------TTRFALACNQSEK 155 (333)
T ss_pred CCceeEEEeeccchhh-hHHHHHHHHHHHHHcc--------cchhhhhhcchhh
Confidence 4678999999999985 3445556555554432 3455555444443
No 307
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=94.36 E-value=0.69 Score=49.45 Aligned_cols=16 Identities=25% Similarity=0.312 Sum_probs=13.8
Q ss_pred EEEEcCCCCChhhHhH
Q 015712 181 VVLSSGSGSGRTLAYL 196 (402)
Q Consensus 181 vli~a~TGsGKTla~~ 196 (402)
+|+.|+.|+|||.+..
T Consensus 41 yLf~Gp~GvGKTTlAr 56 (647)
T PRK07994 41 YLFSGTRGVGKTTIAR 56 (647)
T ss_pred EEEECCCCCCHHHHHH
Confidence 6999999999998653
No 308
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.36 E-value=0.59 Score=43.01 Aligned_cols=52 Identities=27% Similarity=0.253 Sum_probs=31.3
Q ss_pred cCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHh
Q 015712 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 239 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l 239 (402)
.|..+++.|++|+|||...+--+...+. .+..+++++- .+.+.++.+.+..+
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~----------~g~~~~~is~-e~~~~~i~~~~~~~ 70 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLR----------DGDPVIYVTT-EESRESIIRQAAQF 70 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHh----------cCCeEEEEEc-cCCHHHHHHHHHHh
Confidence 4678999999999998754333333332 2446777763 34445554444443
No 309
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.35 E-value=0.95 Score=41.89 Aligned_cols=51 Identities=10% Similarity=0.202 Sum_probs=31.8
Q ss_pred CCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHh
Q 015712 178 GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 239 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l 239 (402)
|.-+++.|++|+|||.....-+...+. .+.+++|+.-- +-..++.+.+..+
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~----------~g~~~~y~~~e-~~~~~~~~~~~~~ 75 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALK----------QGKKVYVITTE-NTSKSYLKQMESV 75 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHh----------CCCEEEEEEcC-CCHHHHHHHHHHC
Confidence 456899999999999755433343332 35677777653 3344555555554
No 310
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=94.32 E-value=0.39 Score=53.58 Aligned_cols=80 Identities=14% Similarity=0.249 Sum_probs=64.0
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHh----cCCccEEEeCchhhHHHhhcCCCCCCC
Q 015712 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDD 290 (402)
Q Consensus 215 ~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~l~~~l~~~~~~l~~ 290 (402)
++.+++|+||+++-+..++..++.+. .++++..++|+.+...+...+ ....+|||||. +-..++++.+
T Consensus 659 ~g~qv~if~n~i~~~e~l~~~L~~~~--p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~------iie~GIDIp~ 730 (926)
T TIGR00580 659 RGGQVFYVHNRIESIEKLATQLRELV--PEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTT------IIETGIDIPN 730 (926)
T ss_pred cCCeEEEEECCcHHHHHHHHHHHHhC--CCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECC------hhhccccccc
Confidence 46789999999999888888877653 367899999999877665443 35689999995 2346889999
Q ss_pred eeEEEEcCCCcc
Q 015712 291 IRYVVLDEADTL 302 (402)
Q Consensus 291 l~~lVlDEad~~ 302 (402)
+++||++.+|++
T Consensus 731 v~~VIi~~a~~~ 742 (926)
T TIGR00580 731 ANTIIIERADKF 742 (926)
T ss_pred CCEEEEecCCCC
Confidence 999999999864
No 311
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=94.30 E-value=0.087 Score=57.36 Aligned_cols=71 Identities=17% Similarity=0.142 Sum_probs=51.9
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhh
Q 015712 162 FVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 240 (402)
Q Consensus 162 ~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~ 240 (402)
..+++-|++++.+. ...++|.|..|||||.+..-=+. ++.... ...+.++|+|+-|+..|..+...+..+.
T Consensus 8 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria-~Li~~~-----~v~p~~IL~lTFT~kAA~Em~~Rl~~~~ 78 (721)
T PRK11773 8 DSLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIA-WLMQVE-----NASPYSIMAVTFTNKAAAEMRHRIEQLL 78 (721)
T ss_pred HhcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHH-HHHHcC-----CCChhHeEeeeccHHHHHHHHHHHHHHh
Confidence 35899999988643 45799999999999987644443 333321 1134589999999999999888887654
No 312
>PRK08840 replicative DNA helicase; Provisional
Probab=94.30 E-value=0.8 Score=47.19 Aligned_cols=152 Identities=14% Similarity=0.157 Sum_probs=74.2
Q ss_pred HcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeec-cCCC
Q 015712 176 LNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSME-NGGV 254 (402)
Q Consensus 176 l~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~-~gg~ 254 (402)
..|.=+|+.|.+|.|||.. ++-+...+... .+..++|.+.- --..|+...+-. ...++...-+ .|..
T Consensus 215 ~~g~LiviaarPg~GKTaf-alnia~~~a~~--------~~~~v~~fSlE-Ms~~ql~~Rlla--~~s~v~~~~i~~~~l 282 (464)
T PRK08840 215 QGSDLIIVAARPSMGKTTF-AMNLCENAAMD--------QDKPVLIFSLE-MPAEQLMMRMLA--SLSRVDQTKIRTGQL 282 (464)
T ss_pred CCCceEEEEeCCCCchHHH-HHHHHHHHHHh--------CCCeEEEEecc-CCHHHHHHHHHH--hhCCCCHHHHhcCCC
Confidence 3455678899999999964 45444443321 24456666432 223333332221 2223322222 2333
Q ss_pred ChHHHHH------HhcCCccEEEe-Cch----hhHHHhhcCCCCCCCeeEEEEcCCCccccCC----CHHHHHHHHHHhh
Q 015712 255 SSKALED------VSNAPIGMLIA-TPS----EVLQHIEDRNVSCDDIRYVVLDEADTLFDRG----FGPEISKILNPLK 319 (402)
Q Consensus 255 ~~~~~~~------~l~~~~~IlV~-TP~----~l~~~l~~~~~~l~~l~~lVlDEad~~l~~g----f~~~i~~il~~l~ 319 (402)
+..+..+ .+.....+.|- +|+ .+...+++-......+++||||=.+.|-..+ ...++..|.+.|+
T Consensus 283 ~~~e~~~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~~~~~~~~r~~ei~~isr~LK 362 (464)
T PRK08840 283 DDEDWARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVDYLQLMRVPALSDNRTLEIAEISRSLK 362 (464)
T ss_pred CHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHhcCCCCCCCchHHHHHHHHHHHH
Confidence 3332221 22122334443 333 3332222211112358999999999874222 2345777777666
Q ss_pred hhhcccCCCCceEEEEeeccCchh
Q 015712 320 DSALKSNGQGFQTILVTAAIAEML 343 (402)
Q Consensus 320 ~~~~~~~~~~~q~i~~SATl~~~v 343 (402)
... ..-++.+|++| -++..+
T Consensus 363 ~lA---kel~ipVi~Ls-QLnR~~ 382 (464)
T PRK08840 363 ALA---KELNVPVVALS-QLNRSL 382 (464)
T ss_pred HHH---HHhCCeEEEEE-ecCccc
Confidence 433 12377888888 455444
No 313
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=94.29 E-value=0.1 Score=51.62 Aligned_cols=25 Identities=20% Similarity=0.337 Sum_probs=18.6
Q ss_pred CcEEEEcCCCCChhhHhHHHHHHHHH
Q 015712 179 KSVVLSSGSGSGRTLAYLLPLVQMLR 204 (402)
Q Consensus 179 ~dvli~a~TGsGKTla~~lpil~~l~ 204 (402)
.++++.||+|+|||... -.++..+.
T Consensus 41 ~~i~I~G~~GtGKT~l~-~~~~~~l~ 65 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT-KYVMKELE 65 (365)
T ss_pred CcEEEECCCCCCHHHHH-HHHHHHHH
Confidence 57999999999999653 44444443
No 314
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.27 E-value=0.07 Score=49.20 Aligned_cols=53 Identities=25% Similarity=0.311 Sum_probs=33.1
Q ss_pred cCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHh
Q 015712 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 239 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l 239 (402)
.|..+++.|++|+|||...+--+...+.+ .+-.++|++ +.+-..++.+.+..+
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~---------~ge~vlyvs-~ee~~~~l~~~~~s~ 70 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKN---------FGEKVLYVS-FEEPPEELIENMKSF 70 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHH---------HT--EEEEE-SSS-HHHHHHHHHTT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhh---------cCCcEEEEE-ecCCHHHHHHHHHHc
Confidence 35679999999999997655445555543 145677776 344456655555554
No 315
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=94.24 E-value=0.47 Score=49.34 Aligned_cols=17 Identities=24% Similarity=0.298 Sum_probs=14.8
Q ss_pred cEEEEcCCCCChhhHhH
Q 015712 180 SVVLSSGSGSGRTLAYL 196 (402)
Q Consensus 180 dvli~a~TGsGKTla~~ 196 (402)
.+|++||.|+|||.+..
T Consensus 45 a~Lf~Gp~G~GKTT~Ar 61 (507)
T PRK06645 45 GYLLTGIRGVGKTTSAR 61 (507)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 69999999999998653
No 316
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=94.22 E-value=0.11 Score=55.89 Aligned_cols=16 Identities=19% Similarity=0.364 Sum_probs=13.7
Q ss_pred cEEEEcCCCCChhhHh
Q 015712 180 SVVLSSGSGSGRTLAY 195 (402)
Q Consensus 180 dvli~a~TGsGKTla~ 195 (402)
-+|++|+.|+|||.+.
T Consensus 40 AyLFtGPpGvGKTTlA 55 (830)
T PRK07003 40 AYLFTGTRGVGKTTLS 55 (830)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3699999999999764
No 317
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=94.20 E-value=0.57 Score=47.76 Aligned_cols=144 Identities=19% Similarity=0.190 Sum_probs=69.9
Q ss_pred cCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeec-cCCCC
Q 015712 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSME-NGGVS 255 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~-~gg~~ 255 (402)
.|.=+++.|++|+|||. |++-++..+... .+..++|++. ..-..|+...+-.. ..++....+ .|...
T Consensus 194 ~G~l~vi~g~pg~GKT~-~~l~~a~~~a~~--------~g~~vl~~Sl-Em~~~~i~~R~~~~--~~~v~~~~~~~g~l~ 261 (434)
T TIGR00665 194 PSDLIILAARPSMGKTA-FALNIAENAAIK--------EGKPVAFFSL-EMSAEQLAMRMLSS--ESRVDSQKLRTGKLS 261 (434)
T ss_pred CCeEEEEEeCCCCChHH-HHHHHHHHHHHh--------CCCeEEEEeC-cCCHHHHHHHHHHH--hcCCCHHHhccCCCC
Confidence 34568999999999996 444444443321 2445666653 22333433333222 123332222 22222
Q ss_pred hHHH------HHHhcCCccEEE-eCc----hhhHHHhhcCCCCCCCeeEEEEcCCCccccCC----CHHHHHHHHHHhhh
Q 015712 256 SKAL------EDVSNAPIGMLI-ATP----SEVLQHIEDRNVSCDDIRYVVLDEADTLFDRG----FGPEISKILNPLKD 320 (402)
Q Consensus 256 ~~~~------~~~l~~~~~IlV-~TP----~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~g----f~~~i~~il~~l~~ 320 (402)
..+. ...+.. ..+.| .+| ..+...++.-... ..+++||||=.+.|...+ ...++..|.+.|+.
T Consensus 262 ~~~~~~~~~a~~~l~~-~~l~i~d~~~~~~~~i~~~i~~~~~~-~~~~~vvID~l~~i~~~~~~~~r~~~i~~i~~~Lk~ 339 (434)
T TIGR00665 262 DEDWEKLTSAAGKLSE-APLYIDDTPGLTITELRAKARRLKRE-HGLGLIVIDYLQLMSGSGRSENRQQEVSEISRSLKA 339 (434)
T ss_pred HHHHHHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHHh-cCCCEEEEcchHhcCCCCCCCCHHHHHHHHHHHHHH
Confidence 2221 112223 23444 333 3444333321111 348899999998774322 23456666666653
Q ss_pred hhcccCCCCceEEEEee
Q 015712 321 SALKSNGQGFQTILVTA 337 (402)
Q Consensus 321 ~~~~~~~~~~q~i~~SA 337 (402)
... .-++.+|++|-
T Consensus 340 lA~---e~~i~vi~lsq 353 (434)
T TIGR00665 340 LAK---ELNVPVIALSQ 353 (434)
T ss_pred HHH---HhCCeEEEEec
Confidence 221 13677777774
No 318
>PLN03025 replication factor C subunit; Provisional
Probab=94.18 E-value=0.69 Score=45.11 Aligned_cols=17 Identities=29% Similarity=0.581 Sum_probs=14.5
Q ss_pred CcEEEEcCCCCChhhHh
Q 015712 179 KSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 179 ~dvli~a~TGsGKTla~ 195 (402)
.++++.||.|+|||...
T Consensus 35 ~~lll~Gp~G~GKTtla 51 (319)
T PLN03025 35 PNLILSGPPGTGKTTSI 51 (319)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 36999999999999653
No 319
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=94.17 E-value=0.08 Score=51.61 Aligned_cols=63 Identities=17% Similarity=0.107 Sum_probs=45.9
Q ss_pred CCCCCcHHHHHHHHHHHcCC-cEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHH
Q 015712 160 GLFVPSEIQCVGIPAVLNGK-SVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGF 233 (402)
Q Consensus 160 g~~~pt~iQ~~~i~~il~g~-dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~ 233 (402)
.|...++-|...+..+..++ |+|++|.||||||.. +-++..... ..-++|.+--|.||..+.-
T Consensus 154 ~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl--LNal~~~i~---------~~eRvItiEDtaELql~~p 217 (355)
T COG4962 154 IFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL--LNALSGFID---------SDERVITIEDTAELQLAHP 217 (355)
T ss_pred HcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH--HHHHHhcCC---------CcccEEEEeehhhhccCCC
Confidence 46788999999988877765 999999999999974 223322221 2338898888888866533
No 320
>PRK07004 replicative DNA helicase; Provisional
Probab=94.17 E-value=0.38 Score=49.52 Aligned_cols=149 Identities=15% Similarity=0.206 Sum_probs=73.6
Q ss_pred cCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeec-cCCCC
Q 015712 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSME-NGGVS 255 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~-~gg~~ 255 (402)
.|.=+++.|.+|+|||.. ++-+...+... .+..++|.+- ..-..|+...+ ++...++...-+ .|..+
T Consensus 212 ~g~liviaarpg~GKT~~-al~ia~~~a~~--------~~~~v~~fSl-EM~~~ql~~R~--la~~~~v~~~~i~~g~l~ 279 (460)
T PRK07004 212 GGELIIVAGRPSMGKTAF-SMNIGEYVAVE--------YGLPVAVFSM-EMPGTQLAMRM--LGSVGRLDQHRMRTGRLT 279 (460)
T ss_pred CCceEEEEeCCCCCccHH-HHHHHHHHHHH--------cCCeEEEEeC-CCCHHHHHHHH--HHhhcCCCHHHHhcCCCC
Confidence 355688899999999964 45444433221 2445655542 22223333222 112223332222 23333
Q ss_pred hHHHH------HHhcCCccEEEe-Cch----hhHHHhhcCCCCCCCeeEEEEcCCCccccCC----CHHHHHHHHHHhhh
Q 015712 256 SKALE------DVSNAPIGMLIA-TPS----EVLQHIEDRNVSCDDIRYVVLDEADTLFDRG----FGPEISKILNPLKD 320 (402)
Q Consensus 256 ~~~~~------~~l~~~~~IlV~-TP~----~l~~~l~~~~~~l~~l~~lVlDEad~~l~~g----f~~~i~~il~~l~~ 320 (402)
..+.. ..+.. ..+.|. +|+ .+...+++-......+++||||=.+.|-..+ ....+..|.+.|+.
T Consensus 280 ~~e~~~~~~a~~~l~~-~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~~~~~~~~r~~ei~~Isr~LK~ 358 (460)
T PRK07004 280 DEDWPKLTHAVQKMSE-AQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMSGSSQGENRATEISEISRSLKS 358 (460)
T ss_pred HHHHHHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhccCCCCCCcHHHHHHHHHHHHHH
Confidence 33221 22322 345553 433 3333322211112358999999999875322 34457777777765
Q ss_pred hhcccCCCCceEEEEeeccCch
Q 015712 321 SALKSNGQGFQTILVTAAIAEM 342 (402)
Q Consensus 321 ~~~~~~~~~~q~i~~SATl~~~ 342 (402)
... .-++.+|++|- ++..
T Consensus 359 lAk---el~ipVi~lsQ-LnR~ 376 (460)
T PRK07004 359 LAK---ELDVPVIALSQ-LNRG 376 (460)
T ss_pred HHH---HhCCeEEEEec-cChh
Confidence 331 23678888774 4433
No 321
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=94.15 E-value=0.22 Score=53.41 Aligned_cols=116 Identities=14% Similarity=0.166 Sum_probs=67.1
Q ss_pred cEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHH
Q 015712 180 SVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259 (402)
Q Consensus 180 dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~ 259 (402)
-.|+.--.|-|||..-+.-++..=...... .........||+||+-- ..|....+........+.+.+++| ...
T Consensus 154 ggIladd~glgkt~~ti~l~l~~~~~~~~~-~~~~~~kttLivcp~s~-~~qW~~elek~~~~~~l~v~v~~g-r~k--- 227 (674)
T KOG1001|consen 154 GGILADDMGLGKTVKTIALILKQKLKSKEE-DRQKEFKTTLIVCPTSL-LTQWKTELEKVTEEDKLSIYVYHG-RTK--- 227 (674)
T ss_pred cceEeeccccchHHHHHHHHHhcccCCcch-hhccccCceeEecchHH-HHHHHHHHhccCCccceEEEEecc-ccc---
Confidence 467778899999987544333221111100 00124557899999754 455455555555555677777777 111
Q ss_pred HHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccC
Q 015712 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDR 305 (402)
Q Consensus 260 ~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~ 305 (402)
......+++||++|++.+.. ..+.--..-.+|+||||.+-..
T Consensus 228 d~~el~~~dVVltTy~il~~----~~l~~i~w~Riildea~~ikn~ 269 (674)
T KOG1001|consen 228 DKSELNSYDVVLTTYDILKN----SPLVKIKWLRIVLDEAHTIKNK 269 (674)
T ss_pred ccchhcCCceEEeeHHHhhc----ccccceeEEEEEeccccccCCc
Confidence 11223457899999988753 1111123457899999988544
No 322
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=94.08 E-value=0.68 Score=49.76 Aligned_cols=119 Identities=12% Similarity=0.178 Sum_probs=77.8
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHh----cCCccEEEeCchhhHHHhhcCCCCCCC
Q 015712 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDD 290 (402)
Q Consensus 215 ~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~l~~~l~~~~~~l~~ 290 (402)
.+.++||.|+|+..+..+...+... ++.+..++|+.....+...+ ....+|+|||- . -.+++++.+
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~----gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~-----~-L~rGfDiP~ 510 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKEL----GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGIN-----L-LREGLDLPE 510 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhh----ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcC-----h-hcCCeeeCC
Confidence 5779999999999999988877764 67888888887765543322 34678999982 2 236788999
Q ss_pred eeEEEEcCCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHH
Q 015712 291 IRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSS 349 (402)
Q Consensus 291 l~~lVlDEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~ 349 (402)
++++|+-++|.. |+.......+....+.. +. ....++++--..+..+...+..
T Consensus 511 v~lVvi~Dadif---G~p~~~~~~iqriGRag-R~--~~G~vi~~~~~~~~~~~~ai~~ 563 (655)
T TIGR00631 511 VSLVAILDADKE---GFLRSERSLIQTIGRAA-RN--VNGKVIMYADKITDSMQKAIEE 563 (655)
T ss_pred CcEEEEeCcccc---cCCCCHHHHHHHhcCCC-CC--CCCEEEEEEcCCCHHHHHHHHH
Confidence 999999888853 33323333344333211 11 2446677766776655554443
No 323
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.03 E-value=0.029 Score=47.44 Aligned_cols=15 Identities=33% Similarity=0.561 Sum_probs=13.3
Q ss_pred cEEEEcCCCCChhhH
Q 015712 180 SVVLSSGSGSGRTLA 194 (402)
Q Consensus 180 dvli~a~TGsGKTla 194 (402)
++++.|++|+|||..
T Consensus 1 ~vlL~G~~G~GKt~l 15 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTL 15 (139)
T ss_dssp EEEEEESSSSSHHHH
T ss_pred CEEEECCCCCCHHHH
Confidence 489999999999975
No 324
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=94.00 E-value=0.43 Score=51.84 Aligned_cols=42 Identities=12% Similarity=0.067 Sum_probs=25.9
Q ss_pred CeeEEEEcCCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhH
Q 015712 290 DIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLG 344 (402)
Q Consensus 290 ~l~~lVlDEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~ 344 (402)
...+|||||+|++. ..+...++..+. +.++++++||-.+...
T Consensus 109 ~~~IL~IDEIh~Ln----~~qQdaLL~~lE---------~g~IiLI~aTTenp~~ 150 (725)
T PRK13341 109 KRTILFIDEVHRFN----KAQQDALLPWVE---------NGTITLIGATTENPYF 150 (725)
T ss_pred CceEEEEeChhhCC----HHHHHHHHHHhc---------CceEEEEEecCCChHh
Confidence 45689999999873 223333444332 4578888887654433
No 325
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=93.99 E-value=2.5 Score=45.31 Aligned_cols=93 Identities=17% Similarity=0.282 Sum_probs=62.5
Q ss_pred CCCeEEEEcCchH--------HHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHh----cCCccEEEeCchhhHHHhh
Q 015712 215 MHPRAIVLCTTEE--------SADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIE 282 (402)
Q Consensus 215 ~~~~~Lvl~Ptre--------La~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~l~~~l~ 282 (402)
.+.+++|+||+.+ -+..++..+... ..++.+..++|+.+..++...+ ....+|||||. +-
T Consensus 447 ~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~--~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~------vi 518 (630)
T TIGR00643 447 KGRQAYVVYPLIEESEKLDLKAAEALYERLKKA--FPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATT------VI 518 (630)
T ss_pred hCCcEEEEEccccccccchHHHHHHHHHHHHhh--CCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECc------ee
Confidence 4678999999864 233444444432 2468899999999877665543 24689999995 23
Q ss_pred cCCCCCCCeeEEEEcCCCccccCCCHHHHHHHHHHhh
Q 015712 283 DRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (402)
Q Consensus 283 ~~~~~l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~ 319 (402)
..++++.+++++|+..+++. + ..++.....+..
T Consensus 519 e~GvDiP~v~~VIi~~~~r~---g-ls~lhQ~~GRvG 551 (630)
T TIGR00643 519 EVGVDVPNATVMVIEDAERF---G-LSQLHQLRGRVG 551 (630)
T ss_pred ecCcccCCCcEEEEeCCCcC---C-HHHHHHHhhhcc
Confidence 45889999999999888864 1 334444444443
No 326
>PRK08006 replicative DNA helicase; Provisional
Probab=93.96 E-value=1.1 Score=46.37 Aligned_cols=151 Identities=14% Similarity=0.163 Sum_probs=75.5
Q ss_pred cCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeec-cCCCC
Q 015712 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSME-NGGVS 255 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~-~gg~~ 255 (402)
.|.=+++.|.+|.|||. |++-+...+... .+..++|.+.- --..|+...+- +...++...-+ .|..+
T Consensus 223 ~G~LiiIaarPgmGKTa-falnia~~~a~~--------~g~~V~~fSlE-M~~~ql~~Rll--a~~~~v~~~~i~~~~l~ 290 (471)
T PRK08006 223 PSDLIIVAARPSMGKTT-FAMNLCENAAML--------QDKPVLIFSLE-MPGEQIMMRML--ASLSRVDQTRIRTGQLD 290 (471)
T ss_pred CCcEEEEEeCCCCCHHH-HHHHHHHHHHHh--------cCCeEEEEecc-CCHHHHHHHHH--HHhcCCCHHHhhcCCCC
Confidence 34557889999999995 555555444321 24456666432 22233333222 12223332222 23333
Q ss_pred hHHHHH------HhcCCccEEEe-----CchhhHHHhhcCCCCCCCeeEEEEcCCCccccC----CCHHHHHHHHHHhhh
Q 015712 256 SKALED------VSNAPIGMLIA-----TPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDR----GFGPEISKILNPLKD 320 (402)
Q Consensus 256 ~~~~~~------~l~~~~~IlV~-----TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~----gf~~~i~~il~~l~~ 320 (402)
..+..+ .+.....+.|- |+..+...+++-......+++||||=.+.|-.. ....++..|.+.|+.
T Consensus 291 ~~e~~~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~ 370 (471)
T PRK08006 291 DEDWARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMRVPSLSDNRTLEIAEISRSLKA 370 (471)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHccCCCCCCCcHHHHHHHHHHHHH
Confidence 333221 12122345543 333333333221111236899999999977422 234567777777765
Q ss_pred hhcccCCCCceEEEEeeccCchh
Q 015712 321 SALKSNGQGFQTILVTAAIAEML 343 (402)
Q Consensus 321 ~~~~~~~~~~q~i~~SATl~~~v 343 (402)
... .-++.+|++| -++..+
T Consensus 371 lAk---el~ipVi~Ls-QLnR~~ 389 (471)
T PRK08006 371 LAK---ELQVPVVALS-QLNRSL 389 (471)
T ss_pred HHH---HhCCeEEEEE-ecCccc
Confidence 431 2377888888 455444
No 327
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=93.93 E-value=0.13 Score=56.45 Aligned_cols=20 Identities=20% Similarity=0.285 Sum_probs=15.8
Q ss_pred cEEEEcCCCCChhhHhHHHH
Q 015712 180 SVVLSSGSGSGRTLAYLLPL 199 (402)
Q Consensus 180 dvli~a~TGsGKTla~~lpi 199 (402)
-+|+.|+.|+|||.+..+-+
T Consensus 39 a~Lf~Gp~G~GKTt~A~~lA 58 (824)
T PRK07764 39 AYLFSGPRGCGKTSSARILA 58 (824)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 37999999999998764433
No 328
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.88 E-value=0.58 Score=49.80 Aligned_cols=40 Identities=20% Similarity=0.362 Sum_probs=24.2
Q ss_pred CCeeEEEEcCCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEee
Q 015712 289 DDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTA 337 (402)
Q Consensus 289 ~~l~~lVlDEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SA 337 (402)
...+++||||+|+|.. ...+.+++.|... ..++.+|+.|-
T Consensus 123 gr~KViIIDEah~Ls~----~AaNALLKTLEEP-----P~~v~FILaTt 162 (700)
T PRK12323 123 GRFKVYMIDEVHMLTN----HAFNAMLKTLEEP-----PEHVKFILATT 162 (700)
T ss_pred CCceEEEEEChHhcCH----HHHHHHHHhhccC-----CCCceEEEEeC
Confidence 5678999999998843 3344455544321 13556666554
No 329
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=93.81 E-value=0.86 Score=48.43 Aligned_cols=42 Identities=21% Similarity=0.404 Sum_probs=27.6
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC---CcEEEEcCCCCChhhHhHH
Q 015712 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNG---KSVVLSSGSGSGRTLAYLL 197 (402)
Q Consensus 141 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g---~dvli~a~TGsGKTla~~l 197 (402)
.+|+++--.+.+++.|.. .+..| +.+|++||.|+|||....+
T Consensus 21 ~~f~dliGq~~~v~~L~~---------------~~~~gri~ha~L~~Gp~GvGKTt~Ar~ 65 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTN---------------AFETGRIAQAFMLTGVRGVGKTTTARI 65 (598)
T ss_pred CCHHHhcCcHHHHHHHHH---------------HHHcCCCCceEEEECCCCCCHHHHHHH
Confidence 467777556666655543 12233 3589999999999976533
No 330
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=93.79 E-value=1.8 Score=37.79 Aligned_cols=44 Identities=23% Similarity=0.366 Sum_probs=25.4
Q ss_pred CCeeEEEEcCCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCc
Q 015712 289 DDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 341 (402)
Q Consensus 289 ~~l~~lVlDEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~ 341 (402)
...+.+|||+||.|. ......+++.|-.. +.+..+|+++.....
T Consensus 101 ~~~KviiI~~ad~l~----~~a~NaLLK~LEep-----p~~~~fiL~t~~~~~ 144 (162)
T PF13177_consen 101 GKYKVIIIDEADKLT----EEAQNALLKTLEEP-----PENTYFILITNNPSK 144 (162)
T ss_dssp SSSEEEEEETGGGS-----HHHHHHHHHHHHST-----TTTEEEEEEES-GGG
T ss_pred CCceEEEeehHhhhh----HHHHHHHHHHhcCC-----CCCEEEEEEECChHH
Confidence 578999999999984 33444444444321 135555555554443
No 331
>PRK06321 replicative DNA helicase; Provisional
Probab=93.76 E-value=0.85 Score=47.10 Aligned_cols=144 Identities=18% Similarity=0.236 Sum_probs=71.5
Q ss_pred CCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeec-cCCCCh
Q 015712 178 GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSME-NGGVSS 256 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~-~gg~~~ 256 (402)
|.=+|+.|.+|.|||.. ++-+...+... .+..++|.+. ..-..|+...+- +...++...-+ .|..+.
T Consensus 226 G~LiiiaarPgmGKTaf-al~ia~~~a~~--------~g~~v~~fSL-EMs~~ql~~Rll--a~~s~v~~~~i~~~~l~~ 293 (472)
T PRK06321 226 SNLMILAARPAMGKTAL-ALNIAENFCFQ--------NRLPVGIFSL-EMTVDQLIHRII--CSRSEVESKKISVGDLSG 293 (472)
T ss_pred CcEEEEEeCCCCChHHH-HHHHHHHHHHh--------cCCeEEEEec-cCCHHHHHHHHH--HhhcCCCHHHhhcCCCCH
Confidence 33468899999999964 55555554321 2445655532 222333333322 22223332222 233333
Q ss_pred HHHH------HHhcCCccEEEe-Cc----hhhHHHhhcCCCCCCCeeEEEEcCCCccccCC-------CHHHHHHHHHHh
Q 015712 257 KALE------DVSNAPIGMLIA-TP----SEVLQHIEDRNVSCDDIRYVVLDEADTLFDRG-------FGPEISKILNPL 318 (402)
Q Consensus 257 ~~~~------~~l~~~~~IlV~-TP----~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~g-------f~~~i~~il~~l 318 (402)
.+.. ..+.. ..+.|- +| ..+...++.-. .-..+++||||=.+.|...+ ...++..|.+.|
T Consensus 294 ~e~~~~~~a~~~l~~-~~~~idd~~~~ti~~i~~~~r~~~-~~~~~~lvvIDyLql~~~~~~~~~~~~r~~ei~~Isr~L 371 (472)
T PRK06321 294 RDFQRIVSVVNEMQE-HTLLIDDQPGLKITDLRARARRMK-ESYDIQFLIIDYLQLLSGSGNLRNSESRQTEISEISRML 371 (472)
T ss_pred HHHHHHHHHHHHHHc-CCEEEeCCCCCCHHHHHHHHHHHH-HhcCCCEEEEcchHHcCCCCccCCcchHHHHHHHHHHHH
Confidence 2222 22333 245554 33 33433333211 12458899999999875322 234567777777
Q ss_pred hhhhcccCCCCceEEEEeec
Q 015712 319 KDSALKSNGQGFQTILVTAA 338 (402)
Q Consensus 319 ~~~~~~~~~~~~q~i~~SAT 338 (402)
+.... .-++.+|++|..
T Consensus 372 K~lAk---el~vpVi~lsQL 388 (472)
T PRK06321 372 KNLAR---ELNIPILCLSQL 388 (472)
T ss_pred HHHHH---HhCCcEEEEeec
Confidence 64321 136777777763
No 332
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=93.70 E-value=0.11 Score=55.46 Aligned_cols=158 Identities=16% Similarity=0.158 Sum_probs=95.0
Q ss_pred CCcHHHHHHHHHHHcCCc----------EEEEcCCCC--ChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHH
Q 015712 163 VPSEIQCVGIPAVLNGKS----------VVLSSGSGS--GRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESAD 230 (402)
Q Consensus 163 ~pt~iQ~~~i~~il~g~d----------vli~a~TGs--GKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~ 230 (402)
.++..|.+++-.+.+.++ .||--..|. |.|.+- -|++..++ ...++|++.-+..|-.
T Consensus 264 ~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAg--iIfeNyLk---------GRKrAlW~SVSsDLKf 332 (1300)
T KOG1513|consen 264 HLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAG--IIFENYLK---------GRKRALWFSVSSDLKF 332 (1300)
T ss_pred chhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEE--EEehhhhc---------ccceeEEEEecccccc
Confidence 467789888876654332 444444444 455543 34455544 4668999999999888
Q ss_pred HHHHHHHHhhccCCcceeecc----CCCChHHHHHHhcCCccEEEeCchhhHHHhh---------------cCCCCCCCe
Q 015712 231 QGFHMAKFISHCARLDSSMEN----GGVSSKALEDVSNAPIGMLIATPSEVLQHIE---------------DRNVSCDDI 291 (402)
Q Consensus 231 Qi~~~~~~l~~~~~~~v~~~~----gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~---------------~~~~~l~~l 291 (402)
...+.++.++.. ++.|..+. +..+..+.. +-.-.|+++|--.|.--.+ --+-++ =
T Consensus 333 DAERDL~DigA~-~I~V~alnK~KYakIss~en~---n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~f--e 406 (1300)
T KOG1513|consen 333 DAERDLRDIGAT-GIAVHALNKFKYAKISSKENT---NTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDF--E 406 (1300)
T ss_pred chhhchhhcCCC-CccceehhhcccccccccccC---CccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhcc--c
Confidence 888888887543 56655432 222211110 0123589999765543222 111112 2
Q ss_pred eEEEEcCCCcccc---C--C----CHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHH
Q 015712 292 RYVVLDEADTLFD---R--G----FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQ 346 (402)
Q Consensus 292 ~~lVlDEad~~l~---~--g----f~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~ 346 (402)
.+||+||||..=+ . + .+..+..+-..|+ +.++|..|||-..+-.++
T Consensus 407 GvIvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP---------~ARVVYASATGAsEPrNM 461 (1300)
T KOG1513|consen 407 GVIVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKLP---------NARVVYASATGASEPRNM 461 (1300)
T ss_pred eeEEehhhhhhcccccccCCCcCcccHhHHHHHHhCC---------CceEEEeeccCCCCcchh
Confidence 6799999998533 1 1 5666777777776 679999999976554444
No 333
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.57 E-value=0.88 Score=45.30 Aligned_cols=16 Identities=31% Similarity=0.391 Sum_probs=13.7
Q ss_pred cEEEEcCCCCChhhHh
Q 015712 180 SVVLSSGSGSGRTLAY 195 (402)
Q Consensus 180 dvli~a~TGsGKTla~ 195 (402)
-+++.||.|+|||...
T Consensus 40 ~~L~~Gp~G~GKTtla 55 (363)
T PRK14961 40 AWLLSGTRGVGKTTIA 55 (363)
T ss_pred EEEEecCCCCCHHHHH
Confidence 3699999999999764
No 334
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=93.53 E-value=0.36 Score=47.17 Aligned_cols=102 Identities=14% Similarity=0.088 Sum_probs=47.7
Q ss_pred EEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHH-HHH---HHHHhhccCCcceeec--cCCCC
Q 015712 182 VLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQ-GFH---MAKFISHCARLDSSME--NGGVS 255 (402)
Q Consensus 182 li~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Q-i~~---~~~~l~~~~~~~v~~~--~gg~~ 255 (402)
++.++.|+|||.+.++.++..+.... .+..++++ +|...+.. +.. .+..+... .+....- ....
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~-------~~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~- 70 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRP-------PGRRVIIA-STYRQARDIFGRFWKGIIELLPS-WFEIKFNEWNDRK- 70 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSS-------S--EEEEE-ESSHHHHHHHHHHHHHHHHTS-T-TTS--EEEE-SSE-
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCC-------CCcEEEEe-cCHHHHHHHHHHhHHHHHHHHHH-hcCcccccCCCCc-
Confidence 57789999999998888888777631 12455555 66665544 222 22232222 1111111 0000
Q ss_pred hHHHHHHhcCCccEEEeCchh--hHHHhhcCCCCCCCeeEEEEcCCCccc
Q 015712 256 SKALEDVSNAPIGMLIATPSE--VLQHIEDRNVSCDDIRYVVLDEADTLF 303 (402)
Q Consensus 256 ~~~~~~~l~~~~~IlV~TP~~--l~~~l~~~~~~l~~l~~lVlDEad~~l 303 (402)
..+.++..|.+.+-.. -..-+.. ..+.++++||+-.+-
T Consensus 71 -----~~~~nG~~i~~~~~~~~~~~~~~~G-----~~~~~i~iDE~~~~~ 110 (384)
T PF03237_consen 71 -----IILPNGSRIQFRGADSPDSGDNIRG-----FEYDLIIIDEAAKVP 110 (384)
T ss_dssp -----EEETTS-EEEEES-----SHHHHHT-----S--SEEEEESGGGST
T ss_pred -----EEecCceEEEEeccccccccccccc-----cccceeeeeecccCc
Confidence 0114556666666332 1222222 457799999988663
No 335
>PRK10436 hypothetical protein; Provisional
Probab=93.50 E-value=0.32 Score=49.98 Aligned_cols=39 Identities=21% Similarity=0.329 Sum_probs=25.1
Q ss_pred cHHHHHHHHHHH--cCCcEEEEcCCCCChhhHhHHHHHHHHH
Q 015712 165 SEIQCVGIPAVL--NGKSVVLSSGSGSGRTLAYLLPLVQMLR 204 (402)
Q Consensus 165 t~iQ~~~i~~il--~g~dvli~a~TGsGKTla~~lpil~~l~ 204 (402)
.+-|...|..++ .+.-+|++||||||||... ..++..+.
T Consensus 203 ~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~~ 243 (462)
T PRK10436 203 TPAQLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQTLN 243 (462)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHHhhC
Confidence 344445554443 3446999999999999864 45565553
No 336
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=93.48 E-value=0.8 Score=49.15 Aligned_cols=19 Identities=21% Similarity=0.364 Sum_probs=15.4
Q ss_pred CcEEEEcCCCCChhhHhHH
Q 015712 179 KSVVLSSGSGSGRTLAYLL 197 (402)
Q Consensus 179 ~dvli~a~TGsGKTla~~l 197 (402)
+.+|++|+.|+|||.+..+
T Consensus 39 Ha~Lf~GP~GvGKTTlAri 57 (709)
T PRK08691 39 HAYLLTGTRGVGKTTIARI 57 (709)
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 3589999999999976533
No 337
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=93.47 E-value=1 Score=44.20 Aligned_cols=31 Identities=10% Similarity=0.080 Sum_probs=25.0
Q ss_pred cHHHHHHHHHHHc--CC---cEEEEcCCCCChhhHh
Q 015712 165 SEIQCVGIPAVLN--GK---SVVLSSGSGSGRTLAY 195 (402)
Q Consensus 165 t~iQ~~~i~~il~--g~---dvli~a~TGsGKTla~ 195 (402)
+|||...|..+.. |+ -+++.||.|+|||...
T Consensus 3 yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la 38 (325)
T PRK08699 3 YPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFA 38 (325)
T ss_pred CCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHH
Confidence 6888888888773 33 5899999999999754
No 338
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=93.41 E-value=0.77 Score=40.84 Aligned_cols=63 Identities=16% Similarity=0.179 Sum_probs=32.2
Q ss_pred cCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhh
Q 015712 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 240 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~ 240 (402)
.|.=+++.|++|+|||...+--+...+............+.+++|+..-.. ..++.+.+..+.
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~ 93 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALL 93 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHh
Confidence 456699999999999976443333333221110001124567777765444 556666666554
No 339
>PF14516 AAA_35: AAA-like domain
Probab=93.38 E-value=0.93 Score=44.53 Aligned_cols=130 Identities=18% Similarity=0.209 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHc-CCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCch------HHHHHHH-HHHH
Q 015712 166 EIQCVGIPAVLN-GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTE------ESADQGF-HMAK 237 (402)
Q Consensus 166 ~iQ~~~i~~il~-g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~Ptr------eLa~Qi~-~~~~ 237 (402)
|+...++..+.+ |.-+.|.||-.+|||.. +.-+++.+.. .+-++++|-=.. .-..+.. ..+.
T Consensus 18 ~~e~~~~~~i~~~G~~~~I~apRq~GKTSl-l~~l~~~l~~---------~~~~~v~id~~~~~~~~~~~~~~f~~~~~~ 87 (331)
T PF14516_consen 18 PAEQECYQEIVQPGSYIRIKAPRQMGKTSL-LLRLLERLQQ---------QGYRCVYIDLQQLGSAIFSDLEQFLRWFCE 87 (331)
T ss_pred HHHHHHHHHHhcCCCEEEEECcccCCHHHH-HHHHHHHHHH---------CCCEEEEEEeecCCCcccCCHHHHHHHHHH
Confidence 488999999887 99999999999999964 5566666654 244555542211 0011111 1223
Q ss_pred HhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCC-CCCCeeEEEEcCCCccccCC-CHHHHHHHH
Q 015712 238 FISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNV-SCDDIRYVVLDEADTLFDRG-FGPEISKIL 315 (402)
Q Consensus 238 ~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~-~l~~l~~lVlDEad~~l~~g-f~~~i~~il 315 (402)
.+....++.. .....+. -.++.+.++...++...+ ....==+|+|||+|.+++.. +..++-..+
T Consensus 88 ~i~~~L~l~~-------~l~~~w~-------~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~L 153 (331)
T PF14516_consen 88 EISRQLKLDE-------KLDEYWD-------EEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLL 153 (331)
T ss_pred HHHHHcCCCh-------hHHHHHH-------HhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHH
Confidence 3444333321 1111111 113344555554443211 11222378999999998743 334444444
Q ss_pred HHhh
Q 015712 316 NPLK 319 (402)
Q Consensus 316 ~~l~ 319 (402)
+...
T Consensus 154 R~~~ 157 (331)
T PF14516_consen 154 RSWY 157 (331)
T ss_pred HHHH
Confidence 4443
No 340
>PTZ00293 thymidine kinase; Provisional
Probab=93.36 E-value=0.8 Score=41.93 Aligned_cols=39 Identities=18% Similarity=0.204 Sum_probs=26.1
Q ss_pred CCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCch
Q 015712 178 GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTE 226 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~Ptr 226 (402)
|+=.++.||.+||||.-.+-. +..... .+.+++++-|..
T Consensus 4 G~i~vi~GpMfSGKTteLLr~-i~~y~~---------ag~kv~~~kp~~ 42 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMRL-VKRFTY---------SEKKCVVIKYSK 42 (211)
T ss_pred eEEEEEECCCCChHHHHHHHH-HHHHHH---------cCCceEEEEecc
Confidence 555688999999999654433 333332 466788888753
No 341
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=93.36 E-value=0.12 Score=51.09 Aligned_cols=46 Identities=24% Similarity=0.309 Sum_probs=32.0
Q ss_pred HHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHH
Q 015712 173 PAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESA 229 (402)
Q Consensus 173 ~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa 229 (402)
-++..+++++++|+||||||.. +-.++..+- ...+++.+-.+.||.
T Consensus 157 ~~v~~~~nilI~G~tGSGKTTl-l~aLl~~i~----------~~~rivtiEd~~El~ 202 (344)
T PRK13851 157 ACVVGRLTMLLCGPTGSGKTTM-SKTLISAIP----------PQERLITIEDTLELV 202 (344)
T ss_pred HHHHcCCeEEEECCCCccHHHH-HHHHHcccC----------CCCCEEEECCCcccc
Confidence 3455788999999999999974 334444332 234677777888774
No 342
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=93.33 E-value=0.2 Score=54.64 Aligned_cols=71 Identities=11% Similarity=0.119 Sum_probs=51.6
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhh
Q 015712 162 FVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 240 (402)
Q Consensus 162 ~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~ 240 (402)
..+++-|.+++.+. ...++|.|..|||||.+..-=+...+.... ..+-++|+|+=|+.-|..+...+..+.
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~l~~ria~Li~~~~------i~P~~IL~lTFT~kAA~em~~Rl~~~~ 73 (726)
T TIGR01073 3 AHLNPEQREAVKTT--EGPLLIMAGAGSGKTRVLTHRIAHLIAEKN------VAPWNILAITFTNKAAREMKERVEKLL 73 (726)
T ss_pred cccCHHHHHHHhCC--CCCEEEEeCCCCCHHHHHHHHHHHHHHcCC------CCHHHeeeeeccHHHHHHHHHHHHHHh
Confidence 35889999988653 457999999999999876555444443211 124579999999999988887776553
No 343
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.32 E-value=1.4 Score=47.06 Aligned_cols=18 Identities=17% Similarity=0.359 Sum_probs=14.8
Q ss_pred cEEEEcCCCCChhhHhHH
Q 015712 180 SVVLSSGSGSGRTLAYLL 197 (402)
Q Consensus 180 dvli~a~TGsGKTla~~l 197 (402)
-+|++|+.|+|||.+..+
T Consensus 40 a~Lf~Gp~GvGKTtlAr~ 57 (618)
T PRK14951 40 AYLFTGTRGVGKTTVSRI 57 (618)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 369999999999987544
No 344
>PRK04328 hypothetical protein; Provisional
Probab=93.31 E-value=0.66 Score=43.63 Aligned_cols=53 Identities=23% Similarity=0.240 Sum_probs=35.0
Q ss_pred cCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhh
Q 015712 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 240 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~ 240 (402)
.|..+++.|++|+|||...+--+...+. .+-.++|++ +.+-..++.+.+..++
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~----------~ge~~lyis-~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQ----------MGEPGVYVA-LEEHPVQVRRNMRQFG 74 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh----------cCCcEEEEE-eeCCHHHHHHHHHHcC
Confidence 4567999999999998754444444443 355677776 5556666666666653
No 345
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.30 E-value=2 Score=43.34 Aligned_cols=28 Identities=21% Similarity=0.269 Sum_probs=19.8
Q ss_pred CCCeeEEEEcCCCccccCCCHHHHHHHHHHhh
Q 015712 288 CDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (402)
Q Consensus 288 l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~ 319 (402)
+..-+++||||+|.|. ......++..+.
T Consensus 125 ~~~~kvvIIdea~~l~----~~~~~~LLk~LE 152 (397)
T PRK14955 125 KGRYRVYIIDEVHMLS----IAAFNAFLKTLE 152 (397)
T ss_pred cCCeEEEEEeChhhCC----HHHHHHHHHHHh
Confidence 4567899999999884 234555666654
No 346
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=93.29 E-value=2.1 Score=41.18 Aligned_cols=16 Identities=25% Similarity=0.511 Sum_probs=14.1
Q ss_pred cEEEEcCCCCChhhHh
Q 015712 180 SVVLSSGSGSGRTLAY 195 (402)
Q Consensus 180 dvli~a~TGsGKTla~ 195 (402)
.+++.|+.|+|||.+.
T Consensus 40 ~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 40 HLLFAGPPGTGKTTAA 55 (319)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5899999999999754
No 347
>PF05729 NACHT: NACHT domain
Probab=93.29 E-value=0.6 Score=39.95 Aligned_cols=24 Identities=29% Similarity=0.391 Sum_probs=17.5
Q ss_pred EEEEcCCCCChhhHhHHHHHHHHHh
Q 015712 181 VVLSSGSGSGRTLAYLLPLVQMLRR 205 (402)
Q Consensus 181 vli~a~TGsGKTla~~lpil~~l~~ 205 (402)
+++.|+.|+|||... --++..+..
T Consensus 3 l~I~G~~G~GKStll-~~~~~~~~~ 26 (166)
T PF05729_consen 3 LWISGEPGSGKSTLL-RKLAQQLAE 26 (166)
T ss_pred EEEECCCCCChHHHH-HHHHHHHHh
Confidence 789999999999754 444555544
No 348
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=93.25 E-value=1 Score=43.90 Aligned_cols=60 Identities=13% Similarity=0.163 Sum_probs=36.0
Q ss_pred hhHHHhhcCCCCCCCeeEEEEcCCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccC
Q 015712 276 EVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIA 340 (402)
Q Consensus 276 ~l~~~l~~~~~~l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~ 340 (402)
.|+..+..+...-+.--.+|+||+|........-.+-.+++....+. .++-++++|.-++
T Consensus 123 ~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r-----~Piciig~Ttrld 182 (408)
T KOG2228|consen 123 KLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSAR-----APICIIGVTTRLD 182 (408)
T ss_pred HHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcC-----CCeEEEEeecccc
Confidence 45555655544444445789999998765555555566666554322 4566677666554
No 349
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=93.24 E-value=3.4 Score=36.11 Aligned_cols=15 Identities=27% Similarity=0.414 Sum_probs=13.1
Q ss_pred EEEEcCCCCChhhHh
Q 015712 181 VVLSSGSGSGRTLAY 195 (402)
Q Consensus 181 vli~a~TGsGKTla~ 195 (402)
+++.|++|+|||...
T Consensus 3 ~~~~G~~G~GKTt~~ 17 (173)
T cd03115 3 ILLVGLQGVGKTTTA 17 (173)
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999864
No 350
>PRK08939 primosomal protein DnaI; Reviewed
Probab=93.22 E-value=0.76 Score=44.66 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=18.9
Q ss_pred CCcEEEEcCCCCChhhHhHHHHHHHHH
Q 015712 178 GKSVVLSSGSGSGRTLAYLLPLVQMLR 204 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~~lpil~~l~ 204 (402)
++.+++.|++|+|||... .++...+.
T Consensus 156 ~~gl~L~G~~G~GKThLa-~Aia~~l~ 181 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLL-AAIANELA 181 (306)
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHHH
Confidence 568999999999999754 34444444
No 351
>PRK05636 replicative DNA helicase; Provisional
Probab=93.20 E-value=0.67 Score=48.25 Aligned_cols=149 Identities=15% Similarity=0.177 Sum_probs=71.8
Q ss_pred CCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeecc-CCCCh
Q 015712 178 GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMEN-GGVSS 256 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~-gg~~~ 256 (402)
|.=+++.|.+|+|||.. ++-++..+... .+..++|.+ ...-..|+...+ ++...++....+. |..+.
T Consensus 265 G~Liiiaarpg~GKT~~-al~~a~~~a~~--------~g~~v~~fS-lEMs~~ql~~R~--ls~~s~v~~~~i~~g~l~~ 332 (505)
T PRK05636 265 GQMIIVAARPGVGKSTL-ALDFMRSASIK--------HNKASVIFS-LEMSKSEIVMRL--LSAEAEVRLSDMRGGKMDE 332 (505)
T ss_pred CceEEEEeCCCCCHHHH-HHHHHHHHHHh--------CCCeEEEEE-eeCCHHHHHHHH--HHHhcCCCHHHHhcCCCCH
Confidence 34468899999999964 34444333221 244566653 222223332222 2222233333232 22332
Q ss_pred HHHH------HHhcCCccEEEe-Cch----hhHHHhhcCCCCCCCeeEEEEcCCCccccCC----CHHHHHHHHHHhhhh
Q 015712 257 KALE------DVSNAPIGMLIA-TPS----EVLQHIEDRNVSCDDIRYVVLDEADTLFDRG----FGPEISKILNPLKDS 321 (402)
Q Consensus 257 ~~~~------~~l~~~~~IlV~-TP~----~l~~~l~~~~~~l~~l~~lVlDEad~~l~~g----f~~~i~~il~~l~~~ 321 (402)
.+.. ..+.+ ..+.|. +|. .+...++.-.. -..+++||||=.+.|-... ....+..|.+.|+..
T Consensus 333 ~e~~~~~~a~~~l~~-~~l~I~d~~~~ti~~I~~~~r~~~~-~~~~~lvvIDYLql~~~~~~~~~r~~ei~~isr~LK~l 410 (505)
T PRK05636 333 DAWEKLVQRLGKIAQ-APIFIDDSANLTMMEIRSKARRLKQ-KHDLKLIVVDYLQLMSSGKRVESRQQEVSEFSRQLKLL 410 (505)
T ss_pred HHHHHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhcCCCCCCCcHHHHHHHHHHHHHHH
Confidence 2221 11222 335543 443 22222221111 1358999999999875321 234567777776654
Q ss_pred hcccCCCCceEEEEeeccCchhH
Q 015712 322 ALKSNGQGFQTILVTAAIAEMLG 344 (402)
Q Consensus 322 ~~~~~~~~~q~i~~SATl~~~v~ 344 (402)
.. .-++.+|++| -++..+.
T Consensus 411 Ak---el~ipVi~ls-QLnR~~e 429 (505)
T PRK05636 411 AK---ELDVPLIAIS-QLNRGPE 429 (505)
T ss_pred HH---HhCCeEEEEe-ecCcccc
Confidence 31 2367888887 4554443
No 352
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=93.19 E-value=0.53 Score=46.89 Aligned_cols=16 Identities=31% Similarity=0.459 Sum_probs=14.5
Q ss_pred cEEEEcCCCCChhhHh
Q 015712 180 SVVLSSGSGSGRTLAY 195 (402)
Q Consensus 180 dvli~a~TGsGKTla~ 195 (402)
++|+.||.|+|||...
T Consensus 50 SmIl~GPPG~GKTTlA 65 (436)
T COG2256 50 SMILWGPPGTGKTTLA 65 (436)
T ss_pred eeEEECCCCCCHHHHH
Confidence 7999999999999754
No 353
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=93.18 E-value=0.34 Score=46.02 Aligned_cols=45 Identities=22% Similarity=0.335 Sum_probs=28.8
Q ss_pred HHHHCCCCCCcHHHHHHHHHHHc--CCcEEEEcCCCCChhhHhHHHHHHHH
Q 015712 155 AVEKMGLFVPSEIQCVGIPAVLN--GKSVVLSSGSGSGRTLAYLLPLVQML 203 (402)
Q Consensus 155 ~l~~~g~~~pt~iQ~~~i~~il~--g~dvli~a~TGsGKTla~~lpil~~l 203 (402)
.|.++|| .+-|.+.|..++. +..+++.|+||||||... -.++..+
T Consensus 58 ~l~~lg~---~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l-~all~~i 104 (264)
T cd01129 58 DLEKLGL---KPENLEIFRKLLEKPHGIILVTGPTGSGKTTTL-YSALSEL 104 (264)
T ss_pred CHHHcCC---CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHH-HHHHhhh
Confidence 3555665 4456666655443 346899999999999754 4455544
No 354
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=93.17 E-value=0.85 Score=48.23 Aligned_cols=17 Identities=24% Similarity=0.354 Sum_probs=14.4
Q ss_pred CcEEEEcCCCCChhhHh
Q 015712 179 KSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 179 ~dvli~a~TGsGKTla~ 195 (402)
+.+|+.||.|+|||...
T Consensus 39 hA~Lf~GP~GvGKTTlA 55 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIA 55 (605)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35899999999999764
No 355
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=93.16 E-value=2 Score=42.40 Aligned_cols=41 Identities=17% Similarity=0.053 Sum_probs=29.3
Q ss_pred CcHHHHHHHHHHHc--CC---cEEEEcCCCCChhhHhHHHHHHHHHh
Q 015712 164 PSEIQCVGIPAVLN--GK---SVVLSSGSGSGRTLAYLLPLVQMLRR 205 (402)
Q Consensus 164 pt~iQ~~~i~~il~--g~---dvli~a~TGsGKTla~~lpil~~l~~ 205 (402)
.+|||...|..+.. |+ -+++.||.|.||+... ..+...+..
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA-~~~A~~LlC 47 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFA-QHLAQGLLC 47 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHH-HHHHHHHcC
Confidence 36888888887764 32 5889999999999754 444455544
No 356
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=93.16 E-value=0.28 Score=48.25 Aligned_cols=46 Identities=22% Similarity=0.307 Sum_probs=31.2
Q ss_pred HHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHH
Q 015712 174 AVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESAD 230 (402)
Q Consensus 174 ~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~ 230 (402)
++..+++++++|+||||||.. +-.++..+- ..-+++++=-+.||..
T Consensus 156 ~v~~~~nili~G~tgSGKTTl-l~aL~~~ip----------~~~ri~tiEd~~El~l 201 (332)
T PRK13900 156 AVISKKNIIISGGTSTGKTTF-TNAALREIP----------AIERLITVEDAREIVL 201 (332)
T ss_pred HHHcCCcEEEECCCCCCHHHH-HHHHHhhCC----------CCCeEEEecCCCcccc
Confidence 455688999999999999974 344554442 2346777666666643
No 357
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.13 E-value=0.86 Score=47.54 Aligned_cols=17 Identities=18% Similarity=0.307 Sum_probs=14.2
Q ss_pred cEEEEcCCCCChhhHhH
Q 015712 180 SVVLSSGSGSGRTLAYL 196 (402)
Q Consensus 180 dvli~a~TGsGKTla~~ 196 (402)
-+|+.||.|+|||.+..
T Consensus 40 a~Lf~Gp~G~GKTt~A~ 56 (509)
T PRK14958 40 AYLFTGTRGVGKTTISR 56 (509)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 46999999999997653
No 358
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=93.11 E-value=0.24 Score=44.12 Aligned_cols=46 Identities=20% Similarity=0.289 Sum_probs=28.4
Q ss_pred HcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHH
Q 015712 176 LNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQG 232 (402)
Q Consensus 176 l~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi 232 (402)
..++++++.|++|+|||... ..+...+.. .+..++|+ ++.+|...+
T Consensus 45 ~~~~~l~l~G~~G~GKThLa-~ai~~~~~~---------~g~~v~f~-~~~~L~~~l 90 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLA-VAIANEAIR---------KGYSVLFI-TASDLLDEL 90 (178)
T ss_dssp SC--EEEEEESTTSSHHHHH-HHHHHHHHH---------TT--EEEE-EHHHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHH-HHHHHHhcc---------CCcceeEe-ecCceeccc
Confidence 35789999999999999764 444544544 35566665 555666553
No 359
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=93.10 E-value=0.029 Score=51.21 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=17.8
Q ss_pred CCcEEEEcCCCCChhhHhHHHHHHHH
Q 015712 178 GKSVVLSSGSGSGRTLAYLLPLVQML 203 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~~lpil~~l 203 (402)
+..+++.||.|+|||.. +--++..+
T Consensus 20 ~~~~~l~G~rg~GKTsL-l~~~~~~~ 44 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSL-LKEFINEL 44 (234)
T ss_dssp SSEEEEEESTTSSHHHH-HHHHHHHC
T ss_pred CcEEEEEcCCcCCHHHH-HHHHHHHh
Confidence 46799999999999973 33444433
No 360
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.09 E-value=0.38 Score=51.27 Aligned_cols=17 Identities=18% Similarity=0.302 Sum_probs=14.4
Q ss_pred cEEEEcCCCCChhhHhH
Q 015712 180 SVVLSSGSGSGRTLAYL 196 (402)
Q Consensus 180 dvli~a~TGsGKTla~~ 196 (402)
-+|++||.|+|||.+..
T Consensus 39 AyLF~GPpGvGKTTlAr 55 (702)
T PRK14960 39 AYLFTGTRGVGKTTIAR 55 (702)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46999999999997653
No 361
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=93.09 E-value=0.44 Score=49.21 Aligned_cols=72 Identities=18% Similarity=0.240 Sum_probs=58.6
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhc----CCccEEEeCchhhHHHhhcCCCCCCC
Q 015712 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSN----APIGMLIATPSEVLQHIEDRNVSCDD 290 (402)
Q Consensus 215 ~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~----~~~~IlV~TP~~l~~~l~~~~~~l~~ 290 (402)
.+.++||.|-|+.-|.++...++.. ++++.+++|+.+..++...|+ ..+.|||||- +..+++++.+
T Consensus 340 ~~~KvIIFc~tkr~~~~l~~~l~~~----~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATd------VAaRGLDi~d 409 (519)
T KOG0331|consen 340 SEGKVIIFCETKRTCDELARNLRRK----GWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATD------VAARGLDVPD 409 (519)
T ss_pred CCCcEEEEecchhhHHHHHHHHHhc----CcceeeecccccHHHHHHHHHhcccCCcceEEEcc------cccccCCCcc
Confidence 5779999999999999988877664 478999999999888776664 3688999996 3457888888
Q ss_pred eeEEEE
Q 015712 291 IRYVVL 296 (402)
Q Consensus 291 l~~lVl 296 (402)
|++||-
T Consensus 410 V~lVIn 415 (519)
T KOG0331|consen 410 VDLVIN 415 (519)
T ss_pred ccEEEe
Confidence 988874
No 362
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=93.03 E-value=0.29 Score=52.88 Aligned_cols=45 Identities=13% Similarity=0.276 Sum_probs=36.7
Q ss_pred CCeeEEEEcCCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCc
Q 015712 289 DDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 341 (402)
Q Consensus 289 ~~l~~lVlDEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~ 341 (402)
.+--|+|||+.|.+-+......+..++++.+ ++...|+.|=+-|.
T Consensus 128 ~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P--------~~l~lvv~SR~rP~ 172 (894)
T COG2909 128 EGPLYLVLDDYHLISDPALHEALRFLLKHAP--------ENLTLVVTSRSRPQ 172 (894)
T ss_pred cCceEEEeccccccCcccHHHHHHHHHHhCC--------CCeEEEEEeccCCC
Confidence 3446999999999987778888999999887 57888888877654
No 363
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=92.99 E-value=2.3 Score=37.12 Aligned_cols=52 Identities=19% Similarity=0.291 Sum_probs=35.0
Q ss_pred CCCeeEEEEcCCCccccCCC--HHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHH
Q 015712 288 CDDIRYVVLDEADTLFDRGF--GPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQL 347 (402)
Q Consensus 288 l~~l~~lVlDEad~~l~~gf--~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~ 347 (402)
....++|||||+-..++.|+ .+++..+++..+ ...-+|+.+-..|+++.+.+
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp--------~~~evIlTGr~~p~~l~e~A 146 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKP--------EDLELVLTGRNAPKELIEAA 146 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCC--------CCCEEEEECCCCCHHHHHhC
Confidence 46789999999998888874 334444444333 35567777767777766653
No 364
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.94 E-value=0.092 Score=49.39 Aligned_cols=38 Identities=29% Similarity=0.560 Sum_probs=28.5
Q ss_pred ccccccCCCCHHHHHH-HHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhH
Q 015712 140 VSSFQELGLKAEMIKA-VEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYL 196 (402)
Q Consensus 140 ~~~f~~l~l~~~l~~~-l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~ 196 (402)
+..|++|+||+-+.+. +.+.|. +|++++|||||+.+.+
T Consensus 107 IPt~eeL~LPevlk~la~~kRGL-------------------viiVGaTGSGKSTtmA 145 (375)
T COG5008 107 IPTFEELKLPEVLKDLALAKRGL-------------------VIIVGATGSGKSTTMA 145 (375)
T ss_pred CCcHHhcCCcHHHHHhhcccCce-------------------EEEECCCCCCchhhHH
Confidence 5678888888776653 444555 8999999999998753
No 365
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.91 E-value=0.81 Score=47.24 Aligned_cols=28 Identities=18% Similarity=0.312 Sum_probs=19.2
Q ss_pred CCCeeEEEEcCCCccccCCCHHHHHHHHHHhh
Q 015712 288 CDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (402)
Q Consensus 288 l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~ 319 (402)
+...++|||||+|.|. ......++..+.
T Consensus 115 ~~~~kVvIIDE~h~Lt----~~a~~~LLk~LE 142 (472)
T PRK14962 115 EGKYKVYIIDEVHMLT----KEAFNALLKTLE 142 (472)
T ss_pred cCCeEEEEEEChHHhH----HHHHHHHHHHHH
Confidence 3567899999999873 334455555554
No 366
>PRK08760 replicative DNA helicase; Provisional
Probab=92.89 E-value=1.2 Score=46.07 Aligned_cols=148 Identities=18% Similarity=0.213 Sum_probs=73.0
Q ss_pred CCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeec-cCCCCh
Q 015712 178 GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSME-NGGVSS 256 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~-~gg~~~ 256 (402)
|.=+++.|++|+|||. |++-+...+... .+..++|.+. ..-..|+...+.... .++....+ .|..+.
T Consensus 229 G~LivIaarPg~GKTa-fal~iA~~~a~~--------~g~~V~~fSl-EMs~~ql~~Rl~a~~--s~i~~~~i~~g~l~~ 296 (476)
T PRK08760 229 TDLIILAARPAMGKTT-FALNIAEYAAIK--------SKKGVAVFSM-EMSASQLAMRLISSN--GRINAQRLRTGALED 296 (476)
T ss_pred CceEEEEeCCCCChhH-HHHHHHHHHHHh--------cCCceEEEec-cCCHHHHHHHHHHhh--CCCcHHHHhcCCCCH
Confidence 4458889999999996 445554444321 2445666643 222334444333222 22322222 233232
Q ss_pred HHHH------HHhcCCccEEEe-C----chhhHHHhhcCCCCCCCeeEEEEcCCCccccCC----CHHHHHHHHHHhhhh
Q 015712 257 KALE------DVSNAPIGMLIA-T----PSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRG----FGPEISKILNPLKDS 321 (402)
Q Consensus 257 ~~~~------~~l~~~~~IlV~-T----P~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~g----f~~~i~~il~~l~~~ 321 (402)
.+.. ..+.. ..+.|. + +..+...+++-. .-..+++||||=.+.|-..+ ...++..|.+.|+..
T Consensus 297 ~e~~~~~~a~~~l~~-~~l~I~d~~~~t~~~I~~~~r~l~-~~~~~~lVvIDyLql~~~~~~~~~r~~ei~~Isr~LK~l 374 (476)
T PRK08760 297 EDWARVTGAIKMLKE-TKIFIDDTPGVSPEVLRSKCRRLK-REHDLGLIVIDYLQLMSVPGNSENRATEISEISRSLKGL 374 (476)
T ss_pred HHHHHHHHHHHHHhc-CCEEEeCCCCCCHHHHHHHHHHHH-HhcCCCEEEEecHHhcCCCCCCcccHHHHHHHHHHHHHH
Confidence 2211 12222 345444 3 334433333211 12358999999998774222 335566776666543
Q ss_pred hcccCCCCceEEEEeeccCchh
Q 015712 322 ALKSNGQGFQTILVTAAIAEML 343 (402)
Q Consensus 322 ~~~~~~~~~q~i~~SATl~~~v 343 (402)
.. .-++.+|++| -++..+
T Consensus 375 Ak---el~ipVi~ls-QLnR~~ 392 (476)
T PRK08760 375 AK---ELNVPVIALS-QLNRSL 392 (476)
T ss_pred HH---HhCCEEEEee-ccCccc
Confidence 31 2367777777 444433
No 367
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.85 E-value=1.7 Score=46.25 Aligned_cols=28 Identities=18% Similarity=0.331 Sum_probs=19.3
Q ss_pred CCCeeEEEEcCCCccccCCCHHHHHHHHHHhh
Q 015712 288 CDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (402)
Q Consensus 288 l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~ 319 (402)
+..-++|||||+|.|.. ..+..++..+.
T Consensus 118 ~~~~kVvIIDEa~~L~~----~a~naLLk~LE 145 (585)
T PRK14950 118 LARYKVYIIDEVHMLST----AAFNALLKTLE 145 (585)
T ss_pred cCCeEEEEEeChHhCCH----HHHHHHHHHHh
Confidence 35678999999998742 34555565554
No 368
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.85 E-value=0.47 Score=49.38 Aligned_cols=29 Identities=21% Similarity=0.347 Sum_probs=20.3
Q ss_pred CCCeeEEEEcCCCccccCCCHHHHHHHHHHhhh
Q 015712 288 CDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 320 (402)
Q Consensus 288 l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~~ 320 (402)
+...++|||||+|.|. ...+..+++.+..
T Consensus 114 ~~~~kVVIIDEad~ls----~~a~naLLk~LEe 142 (504)
T PRK14963 114 RGGRKVYILDEAHMMS----KSAFNALLKTLEE 142 (504)
T ss_pred cCCCeEEEEECccccC----HHHHHHHHHHHHh
Confidence 3567899999999773 3455666666653
No 369
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=92.84 E-value=0.87 Score=45.16 Aligned_cols=31 Identities=19% Similarity=0.329 Sum_probs=20.9
Q ss_pred HHHcCC---cEEEEcCCCCChhhHhHHHHHHHHHh
Q 015712 174 AVLNGK---SVVLSSGSGSGRTLAYLLPLVQMLRR 205 (402)
Q Consensus 174 ~il~g~---dvli~a~TGsGKTla~~lpil~~l~~ 205 (402)
++.+|+ -+|+.||.|+|||... ..+...+..
T Consensus 38 a~~~grl~ha~L~~G~~G~GKttlA-~~lA~~Llc 71 (351)
T PRK09112 38 AYREGKLHHALLFEGPEGIGKATLA-FHLANHILS 71 (351)
T ss_pred HHHcCCCCeeEeeECCCCCCHHHHH-HHHHHHHcC
Confidence 344555 4899999999999653 344555554
No 370
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=92.79 E-value=0.64 Score=44.89 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=18.7
Q ss_pred CCc-EEEEcCCCCChhhHhHHHHHHHHH
Q 015712 178 GKS-VVLSSGSGSGRTLAYLLPLVQMLR 204 (402)
Q Consensus 178 g~d-vli~a~TGsGKTla~~lpil~~l~ 204 (402)
+.. +++.||.|+|||.+. ..+...+.
T Consensus 23 ~~halL~~Gp~G~Gktt~a-~~lA~~l~ 49 (325)
T COG0470 23 LPHALLFYGPPGVGKTTAA-LALAKELL 49 (325)
T ss_pred CCceeeeeCCCCCCHHHHH-HHHHHHHh
Confidence 345 999999999999764 44444444
No 371
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=92.77 E-value=0.72 Score=48.71 Aligned_cols=19 Identities=26% Similarity=0.420 Sum_probs=15.2
Q ss_pred CcEEEEcCCCCChhhHhHH
Q 015712 179 KSVVLSSGSGSGRTLAYLL 197 (402)
Q Consensus 179 ~dvli~a~TGsGKTla~~l 197 (402)
+-+|++||.|+|||.+.-+
T Consensus 39 hayLf~Gp~GtGKTt~Ak~ 57 (559)
T PRK05563 39 HAYLFSGPRGTGKTSAAKI 57 (559)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3478999999999986543
No 372
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=92.75 E-value=0.17 Score=56.10 Aligned_cols=54 Identities=20% Similarity=0.348 Sum_probs=35.2
Q ss_pred cccccccCCCCHHHHHHHHHCCCC---CCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHh
Q 015712 139 VVSSFQELGLKAEMIKAVEKMGLF---VPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 139 ~~~~f~~l~l~~~l~~~l~~~g~~---~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~ 195 (402)
....|++.|.-..++.-|+++-+. +|.-+|.. .+..-+-++.++|.|+|||+..
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~---~itpPrgvL~~GppGTGkTl~a 316 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNF---NITPPRGVLFHGPPGTGKTLMA 316 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHhHhhhhhHhhhc---ccCCCcceeecCCCCCchhHHH
Confidence 345789998888888888876431 22222211 1222456999999999999863
No 373
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.73 E-value=1 Score=47.13 Aligned_cols=52 Identities=19% Similarity=0.355 Sum_probs=34.0
Q ss_pred ccccccCCCCHHHHHHHHHC--CCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhH
Q 015712 140 VSSFQELGLKAEMIKAVEKM--GLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLA 194 (402)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~--g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla 194 (402)
..+|+++|=-...+..|.++ -+..|-.++...+. --+.+|+.||.|+|||..
T Consensus 186 nv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~---PprGvLlHGPPGCGKT~l 239 (802)
T KOG0733|consen 186 NVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVR---PPRGVLLHGPPGCGKTSL 239 (802)
T ss_pred CcchhhccChHHHHHHHHHHHHHhcCchhHhhcCCC---CCCceeeeCCCCccHHHH
Confidence 45899998655555555443 25555555544321 236799999999999963
No 374
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.72 E-value=0.29 Score=51.96 Aligned_cols=142 Identities=18% Similarity=0.209 Sum_probs=79.4
Q ss_pred HHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEE-EcCchHHHHHHHHHHHHhhccCCccee-----
Q 015712 175 VLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIV-LCTTEESADQGFHMAKFISHCARLDSS----- 248 (402)
Q Consensus 175 il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lv-l~PtreLa~Qi~~~~~~l~~~~~~~v~----- 248 (402)
+-.|+.+-++||.|+|||.+ ..++.+++. +.+.++++ =+|-+++=.. +++.-....+...+
T Consensus 491 i~pGe~vALVGPSGsGKSTi--asLL~rfY~--------PtsG~IllDG~~i~~~~~~---~lr~~Ig~V~QEPvLFs~s 557 (716)
T KOG0058|consen 491 IRPGEVVALVGPSGSGKSTI--ASLLLRFYD--------PTSGRILLDGVPISDINHK---YLRRKIGLVGQEPVLFSGS 557 (716)
T ss_pred eCCCCEEEEECCCCCCHHHH--HHHHHHhcC--------CCCCeEEECCeehhhcCHH---HHHHHeeeeeccceeeccc
Confidence 44688999999999999975 556666664 23333332 1233333222 22211111111111
Q ss_pred ----eccCCCC--------------hHHHHHHhcCCccEEEeCchhhHHHhhcCCC-----CCCCeeEEEEcCCCccccC
Q 015712 249 ----MENGGVS--------------SKALEDVSNAPIGMLIATPSEVLQHIEDRNV-----SCDDIRYVVLDEADTLFDR 305 (402)
Q Consensus 249 ----~~~gg~~--------------~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~-----~l~~l~~lVlDEad~~l~~ 305 (402)
+.||-.+ ..++...+..|++=.||.-|..+.-=+..++ -+++-+.+|+|||--.+|.
T Consensus 558 I~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDa 637 (716)
T KOG0058|consen 558 IRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDA 637 (716)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcch
Confidence 2222221 1112233445666667766654332222111 2567889999999999998
Q ss_pred CCHHHHHHHHHHhhhhhcccCCCCceEEEEeec
Q 015712 306 GFGPEISKILNPLKDSALKSNGQGFQTILVTAA 338 (402)
Q Consensus 306 gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SAT 338 (402)
.-...++..+..+.. + +++++-|.
T Consensus 638 eSE~lVq~aL~~~~~--------~-rTVlvIAH 661 (716)
T KOG0058|consen 638 ESEYLVQEALDRLMQ--------G-RTVLVIAH 661 (716)
T ss_pred hhHHHHHHHHHHhhc--------C-CeEEEEeh
Confidence 888888888877752 3 77777774
No 375
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=92.69 E-value=1.2 Score=42.06 Aligned_cols=38 Identities=11% Similarity=0.045 Sum_probs=25.8
Q ss_pred cCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcC
Q 015712 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCT 224 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~P 224 (402)
.|.-+++.|++|+|||...+--+.+.+. .+..++|++-
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~----------~Ge~vlyis~ 72 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQAS----------RGNPVLFVTV 72 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh----------CCCcEEEEEe
Confidence 4567899999999999754433343332 3557788773
No 376
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=92.66 E-value=1.3 Score=45.58 Aligned_cols=123 Identities=12% Similarity=0.179 Sum_probs=91.4
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHh---c-CCccEEEeCchhhHHHhhcCCCCCCC
Q 015712 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS---N-APIGMLIATPSEVLQHIEDRNVSCDD 290 (402)
Q Consensus 215 ~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l---~-~~~~IlV~TP~~l~~~l~~~~~~l~~ 290 (402)
.+-++||.+=|+-+|......+.. .|+++.+++++...-++...+ + ...|||||-. +| +.++++..
T Consensus 445 ~~eRvLVTtLTKkmAEdLT~Yl~e----~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGIN-----LL-REGLDiPE 514 (663)
T COG0556 445 KNERVLVTTLTKKMAEDLTEYLKE----LGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGIN-----LL-REGLDLPE 514 (663)
T ss_pred cCCeEEEEeehHHHHHHHHHHHHh----cCceEEeeeccchHHHHHHHHHHHhcCCccEEEeeh-----hh-hccCCCcc
Confidence 467999999999998887766655 489999999998876665544 3 3589999963 33 35788999
Q ss_pred eeEEEEcCCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhc
Q 015712 291 IRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMEC 353 (402)
Q Consensus 291 l~~lVlDEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~ 353 (402)
|.+|.|=+||. .||...-..++.-+.++. .+.+..+|+..-.++++++..+..--+.
T Consensus 515 VsLVAIlDADK---eGFLRse~SLIQtIGRAA---RN~~GkvIlYAD~iT~sM~~Ai~ET~RR 571 (663)
T COG0556 515 VSLVAILDADK---EGFLRSERSLIQTIGRAA---RNVNGKVILYADKITDSMQKAIDETERR 571 (663)
T ss_pred eeEEEEeecCc---cccccccchHHHHHHHHh---hccCCeEEEEchhhhHHHHHHHHHHHHH
Confidence 99999988995 677766666665554432 2357799999999998888776554443
No 377
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.66 E-value=0.32 Score=48.45 Aligned_cols=107 Identities=19% Similarity=0.254 Sum_probs=60.2
Q ss_pred CcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHH
Q 015712 179 KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA 258 (402)
Q Consensus 179 ~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~ 258 (402)
+|+++.+|.|+|||++. |+|| ...|+...+++||.-..-
T Consensus 385 RNilfyGPPGTGKTm~A------------------------------relA-----------r~SGlDYA~mTGGDVAPl 423 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFA------------------------------RELA-----------RHSGLDYAIMTGGDVAPL 423 (630)
T ss_pred hheeeeCCCCCCchHHH------------------------------HHHH-----------hhcCCceehhcCCCcccc
Confidence 68999999999999753 2232 334777777777754211
Q ss_pred HHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCC----CHHHHHHHHHHhhhhhcccCCCCceEEE
Q 015712 259 LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRG----FGPEISKILNPLKDSALKSNGQGFQTIL 334 (402)
Q Consensus 259 ~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~g----f~~~i~~il~~l~~~~~~~~~~~~q~i~ 334 (402)
-.. -|+-...|.++-.... .==+|.|||||.++-.- ..+.....+..+-- +......-+++
T Consensus 424 G~q--------aVTkiH~lFDWakkS~----rGLllFIDEADAFLceRnktymSEaqRsaLNAlLf---RTGdqSrdivL 488 (630)
T KOG0742|consen 424 GAQ--------AVTKIHKLFDWAKKSR----RGLLLFIDEADAFLCERNKTYMSEAQRSALNALLF---RTGDQSRDIVL 488 (630)
T ss_pred chH--------HHHHHHHHHHHHhhcc----cceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHH---HhcccccceEE
Confidence 000 1233345556554321 11267899999887532 33334444444432 22334566777
Q ss_pred EeeccCc
Q 015712 335 VTAAIAE 341 (402)
Q Consensus 335 ~SATl~~ 341 (402)
+=||--+
T Consensus 489 vlAtNrp 495 (630)
T KOG0742|consen 489 VLATNRP 495 (630)
T ss_pred EeccCCc
Confidence 7777644
No 378
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=92.63 E-value=2.1 Score=38.08 Aligned_cols=28 Identities=18% Similarity=0.361 Sum_probs=19.6
Q ss_pred CCCeeEEEEcCCCccccCCCHHHHHHHHHHhh
Q 015712 288 CDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (402)
Q Consensus 288 l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~ 319 (402)
...-+++||||+|.|. ......++..+.
T Consensus 94 ~~~~kviiide~~~l~----~~~~~~Ll~~le 121 (188)
T TIGR00678 94 ESGRRVVIIEDAERMN----EAAANALLKTLE 121 (188)
T ss_pred cCCeEEEEEechhhhC----HHHHHHHHHHhc
Confidence 4567899999999884 334555666554
No 379
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=92.62 E-value=1.7 Score=43.21 Aligned_cols=47 Identities=17% Similarity=0.236 Sum_probs=32.7
Q ss_pred CCeeEEEEcCCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchh
Q 015712 289 DDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEML 343 (402)
Q Consensus 289 ~~l~~lVlDEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v 343 (402)
+...+|+|||.| +-|-+-.--+..+++.+-. .++-+|+.|.+.|+++
T Consensus 126 ~~~~lLcfDEF~-V~DiaDAmil~rLf~~l~~-------~gvvlVaTSN~~P~~L 172 (362)
T PF03969_consen 126 KESRLLCFDEFQ-VTDIADAMILKRLFEALFK-------RGVVLVATSNRPPEDL 172 (362)
T ss_pred hcCCEEEEeeee-ccchhHHHHHHHHHHHHHH-------CCCEEEecCCCChHHH
Confidence 456789999998 3344444446666666643 4788899999988654
No 380
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.58 E-value=2.2 Score=45.57 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=19.8
Q ss_pred CCCeeEEEEcCCCccccCCCHHHHHHHHHHhh
Q 015712 288 CDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (402)
Q Consensus 288 l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~ 319 (402)
+..-+++||||+|.|. ......++..+.
T Consensus 125 ~~~~KVvIIdEad~Lt----~~a~naLLK~LE 152 (620)
T PRK14954 125 KGRYRVYIIDEVHMLS----TAAFNAFLKTLE 152 (620)
T ss_pred cCCCEEEEEeChhhcC----HHHHHHHHHHHh
Confidence 4567899999999884 334556666664
No 381
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=92.56 E-value=0.66 Score=49.17 Aligned_cols=75 Identities=19% Similarity=0.266 Sum_probs=58.5
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHh----cCCccEEEeCchhhHHHhhcCCCCCCC
Q 015712 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDD 290 (402)
Q Consensus 215 ~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~l~~~l~~~~~~l~~ 290 (402)
.+.++||.|+|+..|.+++..+... ++.+..++|+.+..++...+ +...+|||||. +-..++++.+
T Consensus 256 ~~~k~LVF~nt~~~ae~l~~~L~~~----g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTd------v~arGIDip~ 325 (572)
T PRK04537 256 EGARTMVFVNTKAFVERVARTLERH----GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATD------VAARGLHIDG 325 (572)
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHHc----CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEeh------hhhcCCCccC
Confidence 4668999999999999988877653 67899999998877765544 24689999994 2335788999
Q ss_pred eeEEEEcCC
Q 015712 291 IRYVVLDEA 299 (402)
Q Consensus 291 l~~lVlDEa 299 (402)
++++|.-++
T Consensus 326 V~~VInyd~ 334 (572)
T PRK04537 326 VKYVYNYDL 334 (572)
T ss_pred CCEEEEcCC
Confidence 999987543
No 382
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=92.54 E-value=0.26 Score=48.96 Aligned_cols=27 Identities=19% Similarity=0.399 Sum_probs=20.1
Q ss_pred cCCcEEEEcCCCCChhhHhHHHHHHHHH
Q 015712 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLR 204 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~~lpil~~l~ 204 (402)
.+.-++++||||||||... -.++..+.
T Consensus 133 ~~glilI~GpTGSGKTTtL-~aLl~~i~ 159 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLL-AAIIRELA 159 (358)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHHh
Confidence 4567999999999999754 44555554
No 383
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=92.51 E-value=1.2 Score=40.80 Aligned_cols=45 Identities=20% Similarity=0.222 Sum_probs=26.7
Q ss_pred CCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCch
Q 015712 178 GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTE 226 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~Ptr 226 (402)
|.-+.+.|++|+|||...+.-+...+.... ..+....++|+....
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~----~~g~~~~v~yi~~e~ 63 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGE----LGGLEGKVVYIDTEG 63 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccc----cCCCcceEEEEecCC
Confidence 566899999999999865443333332210 011235677777643
No 384
>PRK13764 ATPase; Provisional
Probab=92.50 E-value=0.29 Score=51.80 Aligned_cols=27 Identities=11% Similarity=0.393 Sum_probs=20.7
Q ss_pred cCCcEEEEcCCCCChhhHhHHHHHHHHH
Q 015712 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLR 204 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~~lpil~~l~ 204 (402)
.+++++++|+||||||.. +-.++..+.
T Consensus 256 ~~~~ILIsG~TGSGKTTl-l~AL~~~i~ 282 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTF-AQALAEFYA 282 (602)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHh
Confidence 467899999999999974 455666554
No 385
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=92.48 E-value=0.54 Score=47.47 Aligned_cols=54 Identities=19% Similarity=0.286 Sum_probs=33.4
Q ss_pred cccccccCCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHh
Q 015712 139 VVSSFQELGLKAEMIKAVEKM---GLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 139 ~~~~f~~l~l~~~l~~~l~~~---g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~ 195 (402)
+..+|++++--+...+.+.+. -+..|.-++...+ ...+.+++.||+|+|||+..
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl---~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGI---DPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCC---CCCceEEEECCCCCCHHHHH
Confidence 345788887766666655543 2233322222221 23578999999999999854
No 386
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=92.47 E-value=0.45 Score=50.31 Aligned_cols=44 Identities=20% Similarity=0.391 Sum_probs=29.5
Q ss_pred HHHCCCCCCcHHHHHHHHHHHc--CCcEEEEcCCCCChhhHhHHHHHHHH
Q 015712 156 VEKMGLFVPSEIQCVGIPAVLN--GKSVVLSSGSGSGRTLAYLLPLVQML 203 (402)
Q Consensus 156 l~~~g~~~pt~iQ~~~i~~il~--g~dvli~a~TGsGKTla~~lpil~~l 203 (402)
|.++|| .+-|...|..++. +.-++++||||||||... ..++..+
T Consensus 295 l~~lg~---~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl-~a~l~~~ 340 (564)
T TIGR02538 295 IDKLGF---EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL-YTALNIL 340 (564)
T ss_pred HHHcCC---CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHhh
Confidence 556665 4556666655443 345889999999999864 4556655
No 387
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=92.47 E-value=0.36 Score=54.04 Aligned_cols=157 Identities=13% Similarity=0.061 Sum_probs=87.1
Q ss_pred cCCcEEEEcCCCCChhhHhHHHHHHHHHhhcc--------cCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhccCCccee
Q 015712 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEA--------LLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSS 248 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~~lpil~~l~~~~~--------~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~ 248 (402)
.|++++..-..|+|||.+-+.-.+........ ........+-+|||||.- +..|.+..+..-... ++++.
T Consensus 373 ~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~a-Il~QW~~EI~kH~~~-~lKv~ 450 (1394)
T KOG0298|consen 373 HGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPNA-ILMQWFEEIHKHISS-LLKVL 450 (1394)
T ss_pred CCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcHH-HHHHHHHHHHHhccc-cceEE
Confidence 35677888889999999876655543221100 000011245689999964 445655544442221 24565
Q ss_pred eccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcC--------------CCCC----CCe--eEEEEcCCCccccCCCH
Q 015712 249 MENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR--------------NVSC----DDI--RYVVLDEADTLFDRGFG 308 (402)
Q Consensus 249 ~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~--------------~~~l----~~l--~~lVlDEad~~l~~gf~ 308 (402)
.+.|-....-.....--.+||||+|-..|..-+... .+++ -.+ =.|+||||.+ +.. -.
T Consensus 451 ~Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQM-ves-ss 528 (1394)
T KOG0298|consen 451 LYFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQM-VES-SS 528 (1394)
T ss_pred EEechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHh-hcc-hH
Confidence 555432211100011124899999998886554321 1111 111 2379999994 444 46
Q ss_pred HHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHH
Q 015712 309 PEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQ 346 (402)
Q Consensus 309 ~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~ 346 (402)
.++...+.+|+ ..-...+|.|.-..+.++
T Consensus 529 S~~a~M~~rL~---------~in~W~VTGTPiq~Iddl 557 (1394)
T KOG0298|consen 529 SAAAEMVRRLH---------AINRWCVTGTPIQKIDDL 557 (1394)
T ss_pred HHHHHHHHHhh---------hhceeeecCCchhhhhhh
Confidence 66777777776 356888999965444443
No 388
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.47 E-value=0.23 Score=50.78 Aligned_cols=40 Identities=25% Similarity=0.371 Sum_probs=29.5
Q ss_pred cHHHHHHHHHHHcCC--cEEEEcCCCCChhhHhHHHHHHHHHh
Q 015712 165 SEIQCVGIPAVLNGK--SVVLSSGSGSGRTLAYLLPLVQMLRR 205 (402)
Q Consensus 165 t~iQ~~~i~~il~g~--dvli~a~TGsGKTla~~lpil~~l~~ 205 (402)
++.|...+..++... =+|+.||||||||.. +..++..+..
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~ 284 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNT 284 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcC
Confidence 677777777776543 389999999999976 4666666654
No 389
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=92.42 E-value=0.4 Score=43.20 Aligned_cols=52 Identities=21% Similarity=0.201 Sum_probs=34.0
Q ss_pred CCCeeEEEEcCCCccccCCC--HHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHH
Q 015712 288 CDDIRYVVLDEADTLFDRGF--GPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQL 347 (402)
Q Consensus 288 l~~l~~lVlDEad~~l~~gf--~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~ 347 (402)
-...++|||||+-..++.|+ .+++..++..-+ ...-+|+..-..|+++.+.+
T Consensus 113 ~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp--------~~~evVlTGR~~p~~Lie~A 166 (191)
T PRK05986 113 DESYDLVVLDELTYALKYGYLDVEEVLEALNARP--------GMQHVVITGRGAPRELIEAA 166 (191)
T ss_pred CCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCC--------CCCEEEEECCCCCHHHHHhC
Confidence 35789999999999998885 334444444332 34455655556777666653
No 390
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=92.41 E-value=0.65 Score=42.94 Aligned_cols=15 Identities=20% Similarity=0.364 Sum_probs=13.6
Q ss_pred cEEEEcCCCCChhhH
Q 015712 180 SVVLSSGSGSGRTLA 194 (402)
Q Consensus 180 dvli~a~TGsGKTla 194 (402)
++|+.||.|+|||..
T Consensus 52 h~lf~GPPG~GKTTL 66 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTL 66 (233)
T ss_dssp EEEEESSTTSSHHHH
T ss_pred eEEEECCCccchhHH
Confidence 699999999999974
No 391
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=92.31 E-value=1.2 Score=40.35 Aligned_cols=39 Identities=21% Similarity=0.283 Sum_probs=26.3
Q ss_pred cCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCc
Q 015712 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTT 225 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~Pt 225 (402)
.|.-+.+.|++|+|||...+..+.+... .+..++|+.-.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~----------~g~~v~yi~~e 49 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAAR----------QGKKVVYIDTE 49 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh----------CCCeEEEEECC
Confidence 3556899999999999865444433332 35577777664
No 392
>PRK05595 replicative DNA helicase; Provisional
Probab=92.27 E-value=0.71 Score=47.28 Aligned_cols=149 Identities=15% Similarity=0.162 Sum_probs=72.6
Q ss_pred CCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeecc-CCCCh
Q 015712 178 GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMEN-GGVSS 256 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~-gg~~~ 256 (402)
|.-+++.|+||.|||. |++-+...+... .+..++|++.- .-..|+...+-. ...++...-+. |..+.
T Consensus 201 g~liviaarpg~GKT~-~al~ia~~~a~~--------~g~~vl~fSlE-ms~~~l~~R~~a--~~~~v~~~~~~~~~l~~ 268 (444)
T PRK05595 201 GDMILIAARPSMGKTT-FALNIAEYAALR--------EGKSVAIFSLE-MSKEQLAYKLLC--SEANVDMLRLRTGNLED 268 (444)
T ss_pred CcEEEEEecCCCChHH-HHHHHHHHHHHH--------cCCcEEEEecC-CCHHHHHHHHHH--HhcCCCHHHHhcCCCCH
Confidence 4457889999999996 445554433211 35567776532 223343333222 22233322222 22222
Q ss_pred HHHHH------HhcCCccEEEe-Cch----hhHHHhhcCCCCCCCeeEEEEcCCCccccCC----CHHHHHHHHHHhhhh
Q 015712 257 KALED------VSNAPIGMLIA-TPS----EVLQHIEDRNVSCDDIRYVVLDEADTLFDRG----FGPEISKILNPLKDS 321 (402)
Q Consensus 257 ~~~~~------~l~~~~~IlV~-TP~----~l~~~l~~~~~~l~~l~~lVlDEad~~l~~g----f~~~i~~il~~l~~~ 321 (402)
.+... .+.. ..+.|- +|+ .+...+++... -..+++||||=.+.|-..+ ...++..|.+.|+..
T Consensus 269 ~e~~~~~~~~~~l~~-~~l~i~d~~~~t~~~i~~~~r~~~~-~~~~~~vvIDylql~~~~~~~~~r~~~v~~is~~LK~l 346 (444)
T PRK05595 269 KDWENIARASGPLAA-AKIFIDDTAGVSVMEMRSKCRRLKI-EHGIDMILIDYLQLMSGGKGSESRQQEVSEISRSIKAL 346 (444)
T ss_pred HHHHHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHH-hcCCCEEEEeHHHhccCCCCCccHHHHHHHHHHHHHHH
Confidence 22111 1211 234443 333 33333322111 1358899999999885332 234567776666543
Q ss_pred hcccCCCCceEEEEeeccCchhH
Q 015712 322 ALKSNGQGFQTILVTAAIAEMLG 344 (402)
Q Consensus 322 ~~~~~~~~~q~i~~SATl~~~v~ 344 (402)
.. .-++.+|++| -++..++
T Consensus 347 Ak---e~~i~vi~ls-QLnR~~e 365 (444)
T PRK05595 347 AK---EMECPVIALS-QLSRAPE 365 (444)
T ss_pred HH---HhCCeEEEee-ccCcchh
Confidence 31 2367888886 4554443
No 393
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=92.27 E-value=0.33 Score=45.88 Aligned_cols=49 Identities=16% Similarity=0.169 Sum_probs=34.0
Q ss_pred cCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHH
Q 015712 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMA 236 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~ 236 (402)
++.++++.|++|+|||... .++...+.. .|.+++ .+++.+|+.++...+
T Consensus 104 ~~~nl~l~G~~G~GKThLa-~Ai~~~l~~---------~g~sv~-f~~~~el~~~Lk~~~ 152 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLA-IAIGNELLK---------AGISVL-FITAPDLLSKLKAAF 152 (254)
T ss_pred cCCcEEEECCCCCcHHHHH-HHHHHHHHH---------cCCeEE-EEEHHHHHHHHHHHH
Confidence 6789999999999999754 444455543 355555 457778887765533
No 394
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=92.26 E-value=5.7 Score=43.09 Aligned_cols=93 Identities=18% Similarity=0.314 Sum_probs=61.5
Q ss_pred CCCeEEEEcCchH--------HHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHh----cCCccEEEeCchhhHHHhh
Q 015712 215 MHPRAIVLCTTEE--------SADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIE 282 (402)
Q Consensus 215 ~~~~~Lvl~Ptre--------La~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~l~~~l~ 282 (402)
.+.+++|+||+.+ -+..+++.+... ..++++..++|+.+..++...+ ....+|||||. +-
T Consensus 470 ~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~--~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~------vi 541 (681)
T PRK10917 470 KGRQAYVVCPLIEESEKLDLQSAEETYEELQEA--FPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATT------VI 541 (681)
T ss_pred cCCcEEEEEcccccccchhHHHHHHHHHHHHHH--CCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECc------ce
Confidence 4678999999653 233344444332 2247899999998877765543 24579999995 22
Q ss_pred cCCCCCCCeeEEEEcCCCccccCCCHHHHHHHHHHhh
Q 015712 283 DRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (402)
Q Consensus 283 ~~~~~l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~ 319 (402)
..++++.+++++|+..+++. + ..++.+...+..
T Consensus 542 e~GiDip~v~~VIi~~~~r~---g-ls~lhQ~~GRvG 574 (681)
T PRK10917 542 EVGVDVPNATVMVIENAERF---G-LAQLHQLRGRVG 574 (681)
T ss_pred eeCcccCCCcEEEEeCCCCC---C-HHHHHHHhhccc
Confidence 45889999999999988864 1 234444444443
No 395
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.25 E-value=1.2 Score=47.16 Aligned_cols=18 Identities=17% Similarity=0.399 Sum_probs=14.6
Q ss_pred cEEEEcCCCCChhhHhHH
Q 015712 180 SVVLSSGSGSGRTLAYLL 197 (402)
Q Consensus 180 dvli~a~TGsGKTla~~l 197 (402)
-+|+.||.|+|||.+..+
T Consensus 40 ayLf~Gp~G~GKtt~A~~ 57 (576)
T PRK14965 40 AFLFTGARGVGKTSTARI 57 (576)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 369999999999986533
No 396
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=92.17 E-value=0.81 Score=46.55 Aligned_cols=72 Identities=19% Similarity=0.277 Sum_probs=56.6
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhc----CCccEEEeCchhhHHHhhcCCCCCCC
Q 015712 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSN----APIGMLIATPSEVLQHIEDRNVSCDD 290 (402)
Q Consensus 215 ~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~----~~~~IlV~TP~~l~~~l~~~~~~l~~ 290 (402)
...++||.|+|++-+..++..+.. .++.+..++|+.+..++...+. ...+|||||- +-..++++.+
T Consensus 244 ~~~~~lVF~~s~~~~~~l~~~L~~----~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd------~~~~GiDip~ 313 (434)
T PRK11192 244 EVTRSIVFVRTRERVHELAGWLRK----AGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATD------VAARGIDIDD 313 (434)
T ss_pred CCCeEEEEeCChHHHHHHHHHHHh----CCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEcc------ccccCccCCC
Confidence 356899999999999998887765 3688999999988777655442 4689999994 2346788999
Q ss_pred eeEEEE
Q 015712 291 IRYVVL 296 (402)
Q Consensus 291 l~~lVl 296 (402)
+.+||.
T Consensus 314 v~~VI~ 319 (434)
T PRK11192 314 VSHVIN 319 (434)
T ss_pred CCEEEE
Confidence 999884
No 397
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.15 E-value=1 Score=47.82 Aligned_cols=27 Identities=22% Similarity=0.395 Sum_probs=19.0
Q ss_pred CCeeEEEEcCCCccccCCCHHHHHHHHHHhh
Q 015712 289 DDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (402)
Q Consensus 289 ~~l~~lVlDEad~~l~~gf~~~i~~il~~l~ 319 (402)
...++|||||+|.|. ......++..+.
T Consensus 118 g~~kVIIIDEad~Lt----~~a~naLLk~LE 144 (624)
T PRK14959 118 GRYKVFIIDEAHMLT----REAFNALLKTLE 144 (624)
T ss_pred CCceEEEEEChHhCC----HHHHHHHHHHhh
Confidence 456899999999883 344555666554
No 398
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=92.13 E-value=2.2 Score=42.51 Aligned_cols=25 Identities=12% Similarity=0.266 Sum_probs=18.5
Q ss_pred cEEEEcCCCCChhhHhHHHHHHHHHh
Q 015712 180 SVVLSSGSGSGRTLAYLLPLVQMLRR 205 (402)
Q Consensus 180 dvli~a~TGsGKTla~~lpil~~l~~ 205 (402)
-+|+.||.|+||+.. +..+...++.
T Consensus 43 A~Lf~Gp~G~GK~~l-A~~~A~~Llc 67 (365)
T PRK07471 43 AWLIGGPQGIGKATL-AYRMARFLLA 67 (365)
T ss_pred eEEEECCCCCCHHHH-HHHHHHHHhC
Confidence 489999999999965 3455555554
No 399
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=92.13 E-value=0.58 Score=47.93 Aligned_cols=71 Identities=20% Similarity=0.300 Sum_probs=57.4
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhc----CCccEEEeCchhhHHHhhcCCCCCCC
Q 015712 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSN----APIGMLIATPSEVLQHIEDRNVSCDD 290 (402)
Q Consensus 215 ~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~----~~~~IlV~TP~~l~~~l~~~~~~l~~ 290 (402)
..|.+||.++|..-|.-++..+.++ +++++.++||.+..++...+. +..+|+|||-- ..++++..+
T Consensus 516 ~~ppiIIFvN~kk~~d~lAk~LeK~----g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDv------AgRGIDIpn 585 (673)
T KOG0333|consen 516 FDPPIIIFVNTKKGADALAKILEKA----GYKVTTLHGGKSQEQRENALADFREGTGDILVATDV------AGRGIDIPN 585 (673)
T ss_pred CCCCEEEEEechhhHHHHHHHHhhc----cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecc------cccCCCCCc
Confidence 4678999999999888888777775 689999999999888776553 36799999962 346888999
Q ss_pred eeEEE
Q 015712 291 IRYVV 295 (402)
Q Consensus 291 l~~lV 295 (402)
|.+||
T Consensus 586 VSlVi 590 (673)
T KOG0333|consen 586 VSLVI 590 (673)
T ss_pred cceee
Confidence 98886
No 400
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.11 E-value=2.4 Score=38.86 Aligned_cols=64 Identities=11% Similarity=0.107 Sum_probs=43.8
Q ss_pred CCCeeEEEEcCCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeec---cCchhHHHHHHHhhcccc
Q 015712 288 CDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAA---IAEMLGEQLSSLMECLER 356 (402)
Q Consensus 288 l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SAT---l~~~v~~~~~~~l~~~~~ 356 (402)
..+-+++|||-...+.-..-..++..++..+++.+ ..-.+|++|+. +++++.-.++..+.....
T Consensus 121 ~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~-----d~gKvIilTvhp~~l~e~~~~rirs~~d~~l~ 187 (235)
T COG2874 121 RWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLS-----DLGKVIILTVHPSALDEDVLTRIRSACDVYLR 187 (235)
T ss_pred hhcCCEEEEecccHHhhcccHHHHHHHHHHHHHHH-----hCCCEEEEEeChhhcCHHHHHHHHHhhheeEE
Confidence 34567899999987765554557777777776654 46689999985 556666556665555443
No 401
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=92.04 E-value=1.5 Score=40.71 Aligned_cols=44 Identities=16% Similarity=0.147 Sum_probs=25.1
Q ss_pred cEEEEcCCCCChhhHhHHHHHHHHHhhcccC--CCCCCCCeEEEEc
Q 015712 180 SVVLSSGSGSGRTLAYLLPLVQMLRRDEALL--PMKPMHPRAIVLC 223 (402)
Q Consensus 180 dvli~a~TGsGKTla~~lpil~~l~~~~~~~--~~~~~~~~~Lvl~ 223 (402)
-.++.|+.|+|||+..+--++.......... .....+.++||++
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~ 48 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLS 48 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEE
Confidence 3689999999999865444444332211110 0012456788887
No 402
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=92.02 E-value=0.15 Score=51.20 Aligned_cols=48 Identities=15% Similarity=0.242 Sum_probs=37.8
Q ss_pred cEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHh
Q 015712 180 SVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 239 (402)
Q Consensus 180 dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l 239 (402)
++++.|+||||||.++++|-+-. .+..+||+=|--|+........+..
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~------------~~~s~vv~D~Kge~~~~t~~~r~~~ 48 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLT------------WPGSVVVLDPKGENFELTSEHRRAL 48 (384)
T ss_pred CeeEecCCCCCCccEEEccchhc------------CCCCEEEEccchhHHHHHHHHHHHc
Confidence 47999999999999999887642 2457888999999988766665543
No 403
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.99 E-value=0.63 Score=45.13 Aligned_cols=139 Identities=17% Similarity=0.123 Sum_probs=74.6
Q ss_pred CCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCC-eEEEEcC-----------chHHHHHHHHHHHHhhccCCc
Q 015712 178 GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHP-RAIVLCT-----------TEESADQGFHMAKFISHCARL 245 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~-~~Lvl~P-----------treLa~Qi~~~~~~l~~~~~~ 245 (402)
++=+++.||+|+|||- .+-++.+.+.-+. .++.. ..||=.. +--|+.++++.++.+....+.
T Consensus 177 NRliLlhGPPGTGKTS-LCKaLaQkLSIR~-----~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~ 250 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTS-LCKALAQKLSIRT-----NDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGN 250 (423)
T ss_pred eeEEEEeCCCCCChhH-HHHHHHHhheeee-----cCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCc
Confidence 3458999999999994 4556666654321 11222 2333233 344778888888888777665
Q ss_pred ceeeccCC---------------CChH---------HHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCc
Q 015712 246 DSSMENGG---------------VSSK---------ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 301 (402)
Q Consensus 246 ~v~~~~gg---------------~~~~---------~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~ 301 (402)
-|++++.. .+.+ .|.+.++..++|+|-|...|.+-+ +.-.+|-||-
T Consensus 251 lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~si----------D~AfVDRADi 320 (423)
T KOG0744|consen 251 LVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSI----------DVAFVDRADI 320 (423)
T ss_pred EEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHH----------HHHhhhHhhh
Confidence 55544332 1111 144556666677766555554443 4445677775
Q ss_pred cccCC--CHHHHHHHHHHhhhhhcccCCCCceEEEEee
Q 015712 302 LFDRG--FGPEISKILNPLKDSALKSNGQGFQTILVTA 337 (402)
Q Consensus 302 ~l~~g--f~~~i~~il~~l~~~~~~~~~~~~q~i~~SA 337 (402)
..--| -...+..|+..+-.-. -..++|.+-+
T Consensus 321 ~~yVG~Pt~~ai~~IlkscieEL-----~~~gIi~~~~ 353 (423)
T KOG0744|consen 321 VFYVGPPTAEAIYEILKSCIEEL-----ISSGIILFHQ 353 (423)
T ss_pred eeecCCccHHHHHHHHHHHHHHH-----HhcCeeeeec
Confidence 44334 2333333433221111 1456777766
No 404
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=91.99 E-value=1.4 Score=49.51 Aligned_cols=142 Identities=13% Similarity=0.123 Sum_probs=106.0
Q ss_pred HHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHh--hcccC---------------------CCCCCCCeEEEEc
Q 015712 167 IQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRR--DEALL---------------------PMKPMHPRAIVLC 223 (402)
Q Consensus 167 iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~--~~~~~---------------------~~~~~~~~~Lvl~ 223 (402)
-|++.|..+...-|||--+.|--=.||-+.+.-+..+.- .++.. ..-.+|.++.||.
T Consensus 731 k~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d~~~ireAI~REl~RgGQvfYv~ 810 (1139)
T COG1197 731 KHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLPVKTFVSEYDDLLIREAILRELLRGGQVFYVH 810 (1139)
T ss_pred cHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcceEEEEecCChHHHHHHHHHHHhcCCEEEEEe
Confidence 488888888888899999889888888766554433221 00000 0023689999999
Q ss_pred CchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHH----hcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCC
Q 015712 224 TTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDV----SNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 299 (402)
Q Consensus 224 PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~----l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEa 299 (402)
|..+-..++...++.+-. ..++++.+|.+...+..+. +....||||||. +-..+++..+...|||+-|
T Consensus 811 NrV~~Ie~~~~~L~~LVP--EarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TT------IIEtGIDIPnANTiIIe~A 882 (1139)
T COG1197 811 NRVESIEKKAERLRELVP--EARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTT------IIETGIDIPNANTIIIERA 882 (1139)
T ss_pred cchhhHHHHHHHHHHhCC--ceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEee------eeecCcCCCCCceEEEecc
Confidence 999999999999988754 5789999999998776654 356899999996 3456889999999999999
Q ss_pred CccccCCCHHHHHHHHHHhhh
Q 015712 300 DTLFDRGFGPEISKILNPLKD 320 (402)
Q Consensus 300 d~~l~~gf~~~i~~il~~l~~ 320 (402)
|+|- ..++.++-.++.+
T Consensus 883 D~fG----LsQLyQLRGRVGR 899 (1139)
T COG1197 883 DKFG----LAQLYQLRGRVGR 899 (1139)
T ss_pred cccc----HHHHHHhccccCC
Confidence 9872 5666666666654
No 405
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.96 E-value=0.96 Score=47.90 Aligned_cols=17 Identities=24% Similarity=0.382 Sum_probs=14.5
Q ss_pred EEEEcCCCCChhhHhHH
Q 015712 181 VVLSSGSGSGRTLAYLL 197 (402)
Q Consensus 181 vli~a~TGsGKTla~~l 197 (402)
+|++||.|+|||.+..+
T Consensus 38 ~Lf~Gp~G~GKTt~A~~ 54 (584)
T PRK14952 38 YLFSGPRGCGKTSSARI 54 (584)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 69999999999987544
No 406
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=91.92 E-value=0.76 Score=46.61 Aligned_cols=73 Identities=16% Similarity=0.206 Sum_probs=56.8
Q ss_pred CCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHh----cCCccEEEeCchhhHHHhhcCCCCCCCe
Q 015712 216 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDDI 291 (402)
Q Consensus 216 ~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~l~~~l~~~~~~l~~l 291 (402)
..++||.|+|+..|..++..+... ++++..++|+.+..++...+ ...++|||||. +-.+++++.++
T Consensus 255 ~~~~lVF~~t~~~~~~l~~~L~~~----g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd------v~~rGiDip~v 324 (423)
T PRK04837 255 PDRAIIFANTKHRCEEIWGHLAAD----GHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATD------VAARGLHIPAV 324 (423)
T ss_pred CCeEEEEECCHHHHHHHHHHHHhC----CCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEec------hhhcCCCcccc
Confidence 568999999999999888877653 78899999998877665543 34689999994 23468889999
Q ss_pred eEEEEcC
Q 015712 292 RYVVLDE 298 (402)
Q Consensus 292 ~~lVlDE 298 (402)
++||.-+
T Consensus 325 ~~VI~~d 331 (423)
T PRK04837 325 THVFNYD 331 (423)
T ss_pred CEEEEeC
Confidence 9887543
No 407
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.85 E-value=2.3 Score=44.72 Aligned_cols=17 Identities=18% Similarity=0.259 Sum_probs=14.2
Q ss_pred cEEEEcCCCCChhhHhH
Q 015712 180 SVVLSSGSGSGRTLAYL 196 (402)
Q Consensus 180 dvli~a~TGsGKTla~~ 196 (402)
.+|+.||.|+|||....
T Consensus 40 a~Lf~Gp~GvGKTTlAr 56 (546)
T PRK14957 40 AYLFTGTRGVGKTTLGR 56 (546)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999998643
No 408
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=91.82 E-value=0.47 Score=49.17 Aligned_cols=45 Identities=18% Similarity=0.340 Sum_probs=28.8
Q ss_pred HHHHCCCCCCcHHHHHHHHHHHcC-C-cEEEEcCCCCChhhHhHHHHHHHH
Q 015712 155 AVEKMGLFVPSEIQCVGIPAVLNG-K-SVVLSSGSGSGRTLAYLLPLVQML 203 (402)
Q Consensus 155 ~l~~~g~~~pt~iQ~~~i~~il~g-~-dvli~a~TGsGKTla~~lpil~~l 203 (402)
.|.++|| .+-|...+..+... + -++++||||||||... ..++..+
T Consensus 220 ~l~~Lg~---~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL-~a~L~~l 266 (486)
T TIGR02533 220 DLETLGM---SPELLSRFERLIRRPHGIILVTGPTGSGKTTTL-YAALSRL 266 (486)
T ss_pred CHHHcCC---CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH-HHHHhcc
Confidence 3455565 45566666655543 3 3789999999999764 3345544
No 409
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=91.80 E-value=2.2 Score=37.78 Aligned_cols=52 Identities=19% Similarity=0.192 Sum_probs=35.1
Q ss_pred CCCeeEEEEcCCCccccCCCH--HHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHH
Q 015712 288 CDDIRYVVLDEADTLFDRGFG--PEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQL 347 (402)
Q Consensus 288 l~~l~~lVlDEad~~l~~gf~--~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~ 347 (402)
-..+++||+||+-..++.|+. +++..++...+ ...-+|+..-..|+.+.+++
T Consensus 95 ~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp--------~~~evVlTGR~~p~~l~e~A 148 (173)
T TIGR00708 95 DPELDLVLLDELTYALKYGYLDVEEVVEALQERP--------GHQHVIITGRGCPQDLLELA 148 (173)
T ss_pred cCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCC--------CCCEEEEECCCCCHHHHHhC
Confidence 357899999999998888843 34444444333 45566766667777766653
No 410
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=91.79 E-value=1.5 Score=43.23 Aligned_cols=41 Identities=12% Similarity=0.113 Sum_probs=28.6
Q ss_pred CcHHHHHHHHHHH----cCC---cEEEEcCCCCChhhHhHHHHHHHHHh
Q 015712 164 PSEIQCVGIPAVL----NGK---SVVLSSGSGSGRTLAYLLPLVQMLRR 205 (402)
Q Consensus 164 pt~iQ~~~i~~il----~g~---dvli~a~TGsGKTla~~lpil~~l~~ 205 (402)
.+|||...|..+. +|+ -.++.||.|.||+... ..+...+.-
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA-~~~A~~LlC 50 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALI-YALSRWLMC 50 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHH-HHHHHHHcC
Confidence 5788888887765 343 5889999999998653 444444443
No 411
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=91.74 E-value=0.21 Score=44.48 Aligned_cols=42 Identities=24% Similarity=0.339 Sum_probs=30.0
Q ss_pred CCeeEEEEcCCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEee
Q 015712 289 DDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTA 337 (402)
Q Consensus 289 ~~l~~lVlDEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SA 337 (402)
.+-+++++||.+..+|......+..++..+.. .+.++|+.|-
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~-------~g~tiIiiSH 156 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMAK-------HTSQFIVITL 156 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-------CCCEEEEEEC
Confidence 56689999999998887776777666665532 2456666655
No 412
>PRK10867 signal recognition particle protein; Provisional
Probab=91.71 E-value=4.8 Score=41.07 Aligned_cols=86 Identities=9% Similarity=0.154 Sum_probs=42.0
Q ss_pred cEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEc-Cc-hHHHHHHHHHHHHhhccCCcceeeccCCCChH
Q 015712 180 SVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLC-TT-EESADQGFHMAKFISHCARLDSSMENGGVSSK 257 (402)
Q Consensus 180 dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~-Pt-reLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~ 257 (402)
-++++|++|+|||.+..--+. ++... .+.++++++ -+ |.-+. ..++.++...++.+.....+.+..
T Consensus 102 vI~~vG~~GsGKTTtaakLA~-~l~~~--------~G~kV~lV~~D~~R~aa~---eQL~~~a~~~gv~v~~~~~~~dp~ 169 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAK-YLKKK--------KKKKVLLVAADVYRPAAI---EQLKTLGEQIGVPVFPSGDGQDPV 169 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHH-HHHHh--------cCCcEEEEEccccchHHH---HHHHHHHhhcCCeEEecCCCCCHH
Confidence 478999999999986533332 23321 144454443 33 33332 223333444455544332222222
Q ss_pred HHH-----HHhcCCcc-EEEeCchhh
Q 015712 258 ALE-----DVSNAPIG-MLIATPSEV 277 (402)
Q Consensus 258 ~~~-----~~l~~~~~-IlV~TP~~l 277 (402)
... .....+++ |||-|||++
T Consensus 170 ~i~~~a~~~a~~~~~DvVIIDTaGrl 195 (433)
T PRK10867 170 DIAKAALEEAKENGYDVVIVDTAGRL 195 (433)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCc
Confidence 211 11223454 667799976
No 413
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=91.71 E-value=0.54 Score=46.97 Aligned_cols=27 Identities=15% Similarity=0.186 Sum_probs=20.0
Q ss_pred CCcEEEEcCCCCChhhHhHHHHHHHHHh
Q 015712 178 GKSVVLSSGSGSGRTLAYLLPLVQMLRR 205 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~~lpil~~l~~ 205 (402)
+..++++||||||||... -.++..+..
T Consensus 149 ~GlilI~G~TGSGKTT~l-~al~~~i~~ 175 (372)
T TIGR02525 149 AGLGLICGETGSGKSTLA-ASIYQHCGE 175 (372)
T ss_pred CCEEEEECCCCCCHHHHH-HHHHHHHHh
Confidence 446899999999999753 556666543
No 414
>PHA02535 P terminase ATPase subunit; Provisional
Probab=91.70 E-value=2.1 Score=44.98 Aligned_cols=85 Identities=12% Similarity=-0.037 Sum_probs=61.7
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchH
Q 015712 148 LKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEE 227 (402)
Q Consensus 148 l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~Ptre 227 (402)
+++.....|.+.-...++++|+..+..-...+.-++.-.--.|+|..|..=++..... .|...++|.|+++
T Consensus 123 ~s~~~~~~l~~~~~~~l~~YQ~~W~~~~~~~r~r~ilKSRQiG~T~~fA~EA~~dal~---------~G~nqiflSas~~ 193 (581)
T PHA02535 123 ISDEQTEKLIEAFLDSLFDYQKHWYRAGLHHRTRNILKSRQIGATYYFAREALEDALL---------TGRNQIFLSASKA 193 (581)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCccccceeeEeeecccchHHHHHHHHHHHHHh---------cCCceEEECCCHH
Confidence 5556666666665568899999988653234555556666799999988776666554 3567899999999
Q ss_pred HHHHHHHHHHHhhc
Q 015712 228 SADQGFHMAKFISH 241 (402)
Q Consensus 228 La~Qi~~~~~~l~~ 241 (402)
.|.+....+..++.
T Consensus 194 QA~~f~~yi~~~a~ 207 (581)
T PHA02535 194 QAHVFKQYIIAFAR 207 (581)
T ss_pred HHHHHHHHHHHHHH
Confidence 99987777766644
No 415
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=91.63 E-value=0.64 Score=44.63 Aligned_cols=63 Identities=13% Similarity=0.047 Sum_probs=44.2
Q ss_pred CeeEEEEcCCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhcc
Q 015712 290 DIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECL 354 (402)
Q Consensus 290 ~l~~lVlDEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~ 354 (402)
.=.++|+||+|.| ..|..+.+.-.+...+ .....+..+.-+|++|.+-..++-+.+-.+.++-
T Consensus 178 ~rslFIFDE~DKm-p~gLld~lkpfLdyyp-~v~gv~frkaIFIfLSN~gg~eI~~~aL~~~~~g 240 (344)
T KOG2170|consen 178 QRSLFIFDEVDKL-PPGLLDVLKPFLDYYP-QVSGVDFRKAIFIFLSNAGGSEIARIALENARNG 240 (344)
T ss_pred CCceEEechhhhc-CHhHHHHHhhhhcccc-ccccccccceEEEEEcCCcchHHHHHHHHHHHcC
Confidence 3468999999988 3555666666665432 1223445577899999999999888887777763
No 416
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.63 E-value=2.5 Score=43.74 Aligned_cols=146 Identities=16% Similarity=0.128 Sum_probs=77.0
Q ss_pred cCCCCHHHHHHHHHCCCCCCcHHHHHHHH----HHHc----C----CcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCC
Q 015712 145 ELGLKAEMIKAVEKMGLFVPSEIQCVGIP----AVLN----G----KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPM 212 (402)
Q Consensus 145 ~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~----~il~----g----~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~ 212 (402)
.||.+++-+......|.-.-.+.-...+. .+.+ . ..+++.+|.|||||...+-.++
T Consensus 493 AFG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~------------ 560 (744)
T KOG0741|consen 493 AFGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIAL------------ 560 (744)
T ss_pred ccCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHh------------
Confidence 46788887777777765443332222221 1111 1 2599999999999964332222
Q ss_pred CCCCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCee
Q 015712 213 KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIR 292 (402)
Q Consensus 213 ~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~ 292 (402)
...-|.+=|+.|..-.- .+.......+. ..+.+.. -+.+.
T Consensus 561 ~S~FPFvKiiSpe~miG------------------------~sEsaKc~~i~----------k~F~DAY------kS~ls 600 (744)
T KOG0741|consen 561 SSDFPFVKIISPEDMIG------------------------LSESAKCAHIK----------KIFEDAY------KSPLS 600 (744)
T ss_pred hcCCCeEEEeChHHccC------------------------ccHHHHHHHHH----------HHHHHhh------cCcce
Confidence 12467777777732111 11111111110 0122222 14578
Q ss_pred EEEEcCCCccccCC-----CHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHH
Q 015712 293 YVVLDEADTLFDRG-----FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 345 (402)
Q Consensus 293 ~lVlDEad~~l~~g-----f~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~ 345 (402)
+||+|++.+++|+. |...+.+.+..+- .+..++++++++|.-|-..++.+
T Consensus 601 iivvDdiErLiD~vpIGPRfSN~vlQaL~Vll---K~~ppkg~kLli~~TTS~~~vL~ 655 (744)
T KOG0741|consen 601 IIVVDDIERLLDYVPIGPRFSNLVLQALLVLL---KKQPPKGRKLLIFGTTSRREVLQ 655 (744)
T ss_pred EEEEcchhhhhcccccCchhhHHHHHHHHHHh---ccCCCCCceEEEEecccHHHHHH
Confidence 99999999999985 5444444333332 23344566677776665544433
No 417
>PF12846 AAA_10: AAA-like domain
Probab=91.61 E-value=0.3 Score=46.43 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=19.7
Q ss_pred CCcEEEEcCCCCChhhHhHHHHHHHHH
Q 015712 178 GKSVVLSSGSGSGRTLAYLLPLVQMLR 204 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~~lpil~~l~ 204 (402)
+.++++.|+||+|||.... .++..+.
T Consensus 1 n~h~~i~G~tGsGKT~~~~-~l~~~~~ 26 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK-NLLEQLI 26 (304)
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHH
Confidence 3579999999999998766 4444443
No 418
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.47 E-value=1.1 Score=47.77 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=18.8
Q ss_pred CCeeEEEEcCCCccccCCCHHHHHHHHHHhh
Q 015712 289 DDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (402)
Q Consensus 289 ~~l~~lVlDEad~~l~~gf~~~i~~il~~l~ 319 (402)
...+++||||||.|- ......++..+.
T Consensus 120 ~~~KViIIDEad~Lt----~~a~naLLK~LE 146 (620)
T PRK14948 120 ARWKVYVIDECHMLS----TAAFNALLKTLE 146 (620)
T ss_pred CCceEEEEECccccC----HHHHHHHHHHHh
Confidence 456899999999883 334555565554
No 419
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=91.41 E-value=0.33 Score=50.73 Aligned_cols=31 Identities=26% Similarity=0.288 Sum_probs=21.1
Q ss_pred CCCeeEEEEcCCCccccCCCHHHHHHHHHHh
Q 015712 288 CDDIRYVVLDEADTLFDRGFGPEISKILNPL 318 (402)
Q Consensus 288 l~~l~~lVlDEad~~l~~gf~~~i~~il~~l 318 (402)
+++-+.+|+||+-.-+|......+...+..+
T Consensus 486 l~~~~iliLDE~TSaLD~~te~~I~~~l~~~ 516 (529)
T TIGR02868 486 LADAPILLLDEPTEHLDAGTESELLEDLLAA 516 (529)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHh
Confidence 4566788888888777766555665555544
No 420
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=91.40 E-value=0.26 Score=50.71 Aligned_cols=49 Identities=20% Similarity=0.236 Sum_probs=38.6
Q ss_pred CcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHh
Q 015712 179 KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 239 (402)
Q Consensus 179 ~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l 239 (402)
.++++.||||||||..|++|.+- . .+..+||.=|--||+......++..
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll---~---------~~~s~iV~D~KgEl~~~t~~~r~~~ 93 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLL---N---------YPGSMIVTDPKGELYEKTAGYRKKR 93 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHH---h---------ccCCEEEEECCCcHHHHHHHHHHHC
Confidence 47999999999999999999763 2 1237888889999988777666654
No 421
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=91.18 E-value=1.2 Score=47.14 Aligned_cols=62 Identities=16% Similarity=0.191 Sum_probs=44.5
Q ss_pred cHHHHHHHHHHHc-------CCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHH
Q 015712 165 SEIQCVGIPAVLN-------GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHM 235 (402)
Q Consensus 165 t~iQ~~~i~~il~-------g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~ 235 (402)
|--|..|+-.+.. .--+-+.|.-|-||+.|.-+.+...+.. ....+.|.+|+-+-..-++..
T Consensus 255 T~dQakav~~f~dai~eK~lr~~vsLtA~RGRGKSAALGlsiA~AVa~---------GysnIyvtSPspeNlkTlFeF 323 (1011)
T KOG2036|consen 255 TLDQAKAVLTFFDAIVEKTLRSTVSLTASRGRGKSAALGLSIAGAVAF---------GYSNIYVTSPSPENLKTLFEF 323 (1011)
T ss_pred hHHHHHHHHHHHHHHHHhhhcceEEEEecCCCCchhhhhHHHHHHHhc---------CcceEEEcCCChHHHHHHHHH
Confidence 5567777654432 1247788999999999999999887764 345677788998876665553
No 422
>PF05894 Podovirus_Gp16: Podovirus DNA encapsidation protein (Gp16); InterPro: IPR008784 This family consists of several DNA encapsidation protein (Gp16) sequences from the phi-29-like viruses. Gene product 16 catalyses the in vivo and in vitro genome-encapsidation reaction [].; GO: 0005524 ATP binding, 0019069 viral capsid assembly
Probab=91.17 E-value=3.3 Score=40.01 Aligned_cols=130 Identities=15% Similarity=0.125 Sum_probs=70.5
Q ss_pred EEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHH-HHHHhhcc-CCcceeeccCCCChHHH
Q 015712 182 VLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFH-MAKFISHC-ARLDSSMENGGVSSKAL 259 (402)
Q Consensus 182 li~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~-~~~~l~~~-~~~~v~~~~gg~~~~~~ 259 (402)
++.|.-|-|||.+..--++..+.. .|.+.|+|=-...-+..+.. .+..+.+. .+... .+.|.
T Consensus 21 ~viG~RgiGKtya~k~~~i~df~~---------~G~qfiyLRr~k~E~~~~~n~~f~dv~~~f~~~~F-~vk~~------ 84 (333)
T PF05894_consen 21 FVIGARGIGKTYALKKKLIKDFIE---------YGEQFIYLRRYKTELDKMKNKFFNDVQQEFPNNEF-EVKGN------ 84 (333)
T ss_pred EEEecccccchhHHHHHHHHHHHh---------cCCEEEEEEecchHHHHHhhHHHHHHHHhCCCCcE-EEEcc------
Confidence 455889999999988777887776 58889998554433322222 23333221 12111 11111
Q ss_pred HHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCC---CH-HHHHHHHH---HhhhhhcccCCCCceE
Q 015712 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRG---FG-PEISKILN---PLKDSALKSNGQGFQT 332 (402)
Q Consensus 260 ~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~g---f~-~~i~~il~---~l~~~~~~~~~~~~q~ 332 (402)
...-.+-.|...+|-.-+. ..++....++.+||+||+= .+.+ +. .++..+++ .+.+. ..++.+
T Consensus 85 -k~~idgk~~g~~~~Ls~~q--~~Ks~~Yp~V~~IvfDEfi--~ek~~~~y~~nEv~~Lln~i~TV~R~-----rd~i~v 154 (333)
T PF05894_consen 85 -KIYIDGKLIGYFIPLSGWQ--KLKSSSYPNVYTIVFDEFI--IEKSNWRYIPNEVKALLNFIDTVFRF-----RDRIRV 154 (333)
T ss_pred -EEEECCeEEEEEEecchhh--hcccCCCCcEEEEEEEEEE--ecCcccCCCchHHHHHHHHHHHHhhc-----ccceEE
Confidence 0111122333334433333 3346678899999999984 2433 22 33333333 33322 268899
Q ss_pred EEEee
Q 015712 333 ILVTA 337 (402)
Q Consensus 333 i~~SA 337 (402)
+++|-
T Consensus 155 icl~N 159 (333)
T PF05894_consen 155 ICLSN 159 (333)
T ss_pred EEEec
Confidence 99987
No 423
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.12 E-value=2 Score=44.97 Aligned_cols=17 Identities=18% Similarity=0.294 Sum_probs=14.2
Q ss_pred cEEEEcCCCCChhhHhH
Q 015712 180 SVVLSSGSGSGRTLAYL 196 (402)
Q Consensus 180 dvli~a~TGsGKTla~~ 196 (402)
-+|+.||.|+|||.+..
T Consensus 40 a~Lf~Gp~G~GKTt~A~ 56 (527)
T PRK14969 40 AYLFTGTRGVGKTTLAR 56 (527)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36999999999997653
No 424
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=91.00 E-value=0.88 Score=40.49 Aligned_cols=37 Identities=8% Similarity=0.118 Sum_probs=25.0
Q ss_pred EEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchH
Q 015712 181 VVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEE 227 (402)
Q Consensus 181 vli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~Ptre 227 (402)
.++.||.+||||.-. +-.+..+.. .+.+++++-|...
T Consensus 4 ~~i~GpM~sGKS~eL-i~~~~~~~~---------~~~~v~~~kp~~D 40 (176)
T PF00265_consen 4 EFITGPMFSGKSTEL-IRRIHRYEI---------AGKKVLVFKPAID 40 (176)
T ss_dssp EEEEESTTSSHHHHH-HHHHHHHHH---------TT-EEEEEEESTS
T ss_pred EEEECCcCChhHHHH-HHHHHHHHh---------CCCeEEEEEeccc
Confidence 578899999999754 444444433 4678888888543
No 425
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=90.98 E-value=1.7 Score=44.75 Aligned_cols=52 Identities=19% Similarity=0.230 Sum_probs=33.0
Q ss_pred cCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHh
Q 015712 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 239 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l 239 (402)
.|.-+++.|++|+|||...+. ++..+.. .+.+++|+.- .+-..|+...+..+
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq-~a~~~a~---------~g~kvlYvs~-EEs~~qi~~ra~rl 144 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQ-VACQLAK---------NQMKVLYVSG-EESLQQIKMRAIRL 144 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHH-HHHHHHh---------cCCcEEEEEC-cCCHHHHHHHHHHc
Confidence 456789999999999976543 3333332 2457888875 34556665555444
No 426
>PRK09165 replicative DNA helicase; Provisional
Probab=90.97 E-value=1.6 Score=45.41 Aligned_cols=157 Identities=15% Similarity=0.075 Sum_probs=74.0
Q ss_pred CCcEEEEcCCCCChhhHhHHHHHHHHH-hhcccC-----CCCCCCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeec-
Q 015712 178 GKSVVLSSGSGSGRTLAYLLPLVQMLR-RDEALL-----PMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSME- 250 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~~lpil~~l~-~~~~~~-----~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~- 250 (402)
|.=+++.|++|+|||... +-+...+. ...... .....+..++|++- ..-..|+...+-.. ..++...-+
T Consensus 217 g~livIaarpg~GKT~~a-l~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSl-EMs~~ql~~R~la~--~s~v~~~~i~ 292 (497)
T PRK09165 217 SDLIILAGRPSMGKTALA-TNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSL-EMSAEQLATRILSE--QSEISSSKIR 292 (497)
T ss_pred CceEEEEeCCCCChHHHH-HHHHHHHHHhhcccccccccccccCCCeEEEEeC-cCCHHHHHHHHHHH--hcCCCHHHHh
Confidence 445889999999999643 33333332 211000 00112556777642 33334444433222 223322222
Q ss_pred cCCCChHHHHH------HhcCCccEEEe-----CchhhHHHhhcCCCCCCCeeEEEEcCCCccccCC------CHHHHHH
Q 015712 251 NGGVSSKALED------VSNAPIGMLIA-----TPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRG------FGPEISK 313 (402)
Q Consensus 251 ~gg~~~~~~~~------~l~~~~~IlV~-----TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~g------f~~~i~~ 313 (402)
.|..+..+... .+.. ..+.|- |+..+...+++-.. -..+++||||=.+.|...+ ...++..
T Consensus 293 ~~~l~~~e~~~l~~a~~~l~~-~~l~I~d~~~~ti~~i~~~ir~l~~-~~~~~lvvIDyLqli~~~~~~~~~~r~~ev~~ 370 (497)
T PRK09165 293 RGKISEEDFEKLVDASQELQK-LPLYIDDTPALSISQLRARARRLKR-QHGLDLLVVDYLQLIRGSSKRSSDNRVQEISE 370 (497)
T ss_pred cCCCCHHHHHHHHHHHHHHhc-CCeEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhccCCCCCCCCchHHHHHH
Confidence 23333222111 1222 335543 33344333332111 1358999999999775322 2245677
Q ss_pred HHHHhhhhhcccCCCCceEEEEeeccCchhH
Q 015712 314 ILNPLKDSALKSNGQGFQTILVTAAIAEMLG 344 (402)
Q Consensus 314 il~~l~~~~~~~~~~~~q~i~~SATl~~~v~ 344 (402)
|.+.|+.... .-++.+|++|- ++..+.
T Consensus 371 is~~LK~lAk---el~ipVi~lsQ-LnR~~e 397 (497)
T PRK09165 371 ITQGLKALAK---ELNIPVIALSQ-LSRQVE 397 (497)
T ss_pred HHHHHHHHHH---HhCCeEEEeec-ccchhh
Confidence 7666654321 23677777765 555443
No 427
>PHA02542 41 41 helicase; Provisional
Probab=90.87 E-value=1.3 Score=45.77 Aligned_cols=46 Identities=9% Similarity=0.034 Sum_probs=29.8
Q ss_pred CeeEEEEcCCCccccC-------CCHHHHHHHHHHhhhhhcccCCCCceEEEEeec
Q 015712 290 DIRYVVLDEADTLFDR-------GFGPEISKILNPLKDSALKSNGQGFQTILVTAA 338 (402)
Q Consensus 290 ~l~~lVlDEad~~l~~-------gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SAT 338 (402)
.+++||||=.+.|-+. +....+..|.+.|+.... .-++.+|++|-.
T Consensus 301 ~~dlVvIDYLqL~~~~~~~~~~~nr~~ei~~Isr~LK~lAk---el~vpVi~lsQL 353 (473)
T PHA02542 301 KPDVIIVDYLGICASSRLRVSSENSYTYVKAIAEELRGLAV---EHDVVVWTAAQT 353 (473)
T ss_pred CCCEEEEechhhccCCcccCCCCChHHHHHHHHHHHHHHHH---HhCCeEEEEEee
Confidence 3789999999987522 234556677666664331 236778877764
No 428
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=90.82 E-value=0.36 Score=45.71 Aligned_cols=45 Identities=20% Similarity=0.281 Sum_probs=30.5
Q ss_pred HHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHH
Q 015712 175 VLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESA 229 (402)
Q Consensus 175 il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa 229 (402)
+..+.+++++|+||||||... -.++..+.. ...+++++-.+.|+.
T Consensus 124 v~~~~~ili~G~tGSGKTT~l-~all~~i~~---------~~~~iv~iEd~~E~~ 168 (270)
T PF00437_consen 124 VRGRGNILISGPTGSGKTTLL-NALLEEIPP---------EDERIVTIEDPPELR 168 (270)
T ss_dssp HHTTEEEEEEESTTSSHHHHH-HHHHHHCHT---------TTSEEEEEESSS-S-
T ss_pred cccceEEEEECCCccccchHH-HHHhhhccc---------cccceEEecccccee
Confidence 345789999999999999754 555555443 235777777777653
No 429
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=90.80 E-value=3.2 Score=40.65 Aligned_cols=41 Identities=17% Similarity=0.116 Sum_probs=27.8
Q ss_pred CcHHHHHHHHHHH----cCC---cEEEEcCCCCChhhHhHHHHHHHHHh
Q 015712 164 PSEIQCVGIPAVL----NGK---SVVLSSGSGSGRTLAYLLPLVQMLRR 205 (402)
Q Consensus 164 pt~iQ~~~i~~il----~g~---dvli~a~TGsGKTla~~lpil~~l~~ 205 (402)
.+|||...|..+. +|+ -.++.||.|.||+... ..+...+..
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA-~~~A~~llC 50 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLI-RALAQWLMC 50 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHH-HHHHHHHcC
Confidence 3678888877655 443 5789999999998653 344444443
No 430
>PTZ00110 helicase; Provisional
Probab=90.72 E-value=1.2 Score=46.78 Aligned_cols=73 Identities=16% Similarity=0.200 Sum_probs=55.9
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHh----cCCccEEEeCchhhHHHhhcCCCCCCC
Q 015712 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDD 290 (402)
Q Consensus 215 ~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~l~~~l~~~~~~l~~ 290 (402)
.+.++||.|+|+.-|..+...+.. .++.+..++|+....++...+ .....|||||. +-.+++++.+
T Consensus 376 ~~~k~LIF~~t~~~a~~l~~~L~~----~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTd------v~~rGIDi~~ 445 (545)
T PTZ00110 376 DGDKILIFVETKKGADFLTKELRL----DGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATD------VASRGLDVKD 445 (545)
T ss_pred cCCeEEEEecChHHHHHHHHHHHH----cCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcc------hhhcCCCccc
Confidence 467999999999999998887764 367888899998877665443 23578999995 2246788999
Q ss_pred eeEEEEc
Q 015712 291 IRYVVLD 297 (402)
Q Consensus 291 l~~lVlD 297 (402)
+++||.=
T Consensus 446 v~~VI~~ 452 (545)
T PTZ00110 446 VKYVINF 452 (545)
T ss_pred CCEEEEe
Confidence 9998863
No 431
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=90.72 E-value=1.2 Score=46.58 Aligned_cols=137 Identities=18% Similarity=0.209 Sum_probs=85.3
Q ss_pred ccccCCCCHHHHHHHHHCCC---------CCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhH-------------hHHHH
Q 015712 142 SFQELGLKAEMIKAVEKMGL---------FVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLA-------------YLLPL 199 (402)
Q Consensus 142 ~f~~l~l~~~l~~~l~~~g~---------~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla-------------~~lpi 199 (402)
..-++|+-+.+...+...-- +-|.+++..+...+.+-. .+-.++....+|.. --+.+
T Consensus 185 rmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~-~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~ 263 (513)
T COG0513 185 RMLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPV-EIEVSVEKLERTLKKIKQFYLEVESEEEKLEL 263 (513)
T ss_pred hhhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCc-EEEEccccccccccCceEEEEEeCCHHHHHHH
Confidence 34455777777777766642 123344444444443222 23333222211211 02334
Q ss_pred HHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHh----cCCccEEEeCch
Q 015712 200 VQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPS 275 (402)
Q Consensus 200 l~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~TP~ 275 (402)
+..+.... ...++||.|.|+..|..+...+... |+++..++|+.+...+.+.+ +...+|+|||--
T Consensus 264 L~~ll~~~-------~~~~~IVF~~tk~~~~~l~~~l~~~----g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDv 332 (513)
T COG0513 264 LLKLLKDE-------DEGRVIVFVRTKRLVEELAESLRKR----GFKVAALHGDLPQEERDRALEKFKDGELRVLVATDV 332 (513)
T ss_pred HHHHHhcC-------CCCeEEEEeCcHHHHHHHHHHHHHC----CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEech
Confidence 44444422 2447999999999999987766664 68999999999988776654 357899999952
Q ss_pred hhHHHhhcCCCCCCCeeEEEE
Q 015712 276 EVLQHIEDRNVSCDDIRYVVL 296 (402)
Q Consensus 276 ~l~~~l~~~~~~l~~l~~lVl 296 (402)
-.+++++.++.+||=
T Consensus 333 ------aaRGiDi~~v~~Vin 347 (513)
T COG0513 333 ------AARGLDIPDVSHVIN 347 (513)
T ss_pred ------hhccCCccccceeEE
Confidence 256888889988864
No 432
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=90.66 E-value=0.67 Score=45.80 Aligned_cols=43 Identities=12% Similarity=0.278 Sum_probs=27.7
Q ss_pred cCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHH
Q 015712 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEES 228 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreL 228 (402)
.+..++++||||||||... -.++..+... .+.+++.+--..|+
T Consensus 121 ~~g~ili~G~tGSGKTT~l-~al~~~i~~~--------~~~~i~tiEdp~E~ 163 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTL-ASMIDYINKN--------AAGHIITIEDPIEY 163 (343)
T ss_pred cCcEEEEECCCCCCHHHHH-HHHHHhhCcC--------CCCEEEEEcCChhh
Confidence 3567999999999999764 3445544321 24466666555554
No 433
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=90.64 E-value=1.9 Score=39.32 Aligned_cols=36 Identities=14% Similarity=0.144 Sum_probs=24.1
Q ss_pred CCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEc
Q 015712 178 GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLC 223 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~ 223 (402)
|.-+++.|++|+|||...+--+... .. .+..++|+.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~-~~---------~g~~v~yi~ 54 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVET-AG---------QGKKVAYID 54 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH-Hh---------cCCeEEEEE
Confidence 4568999999999997544333333 22 356788874
No 434
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=90.57 E-value=0.64 Score=41.84 Aligned_cols=55 Identities=22% Similarity=0.428 Sum_probs=26.2
Q ss_pred CeeEEEEcCCCccccCC-C-HHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHH
Q 015712 290 DIRYVVLDEADTLFDRG-F-GPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSS 349 (402)
Q Consensus 290 ~l~~lVlDEad~~l~~g-f-~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~ 349 (402)
.=.+|||||||.++... . ......++..+...+ ..+.-++++|-.+ ..+...++.
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hR----h~g~diiliTQ~~-~~id~~ir~ 135 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHR----HYGWDIILITQSP-SQIDKFIRD 135 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHHHGGGGCC----CTT-EEEEEES-G-GGB-HHHHC
T ss_pred CCcEEEEECChhhcCCCccccccchHHHHHHHHhC----cCCcEEEEEeCCH-HHHhHHHHH
Confidence 44789999999987764 3 223444444443221 1355666666655 445554444
No 435
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=90.54 E-value=0.36 Score=44.35 Aligned_cols=14 Identities=29% Similarity=0.541 Sum_probs=12.3
Q ss_pred EEEEcCCCCChhhH
Q 015712 181 VVLSSGSGSGRTLA 194 (402)
Q Consensus 181 vli~a~TGsGKTla 194 (402)
++|.|+.|+|||..
T Consensus 1 ~vv~G~pGsGKSt~ 14 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL 14 (234)
T ss_pred CEEEcCCCCCHHHH
Confidence 47899999999974
No 436
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=90.50 E-value=0.74 Score=48.61 Aligned_cols=32 Identities=25% Similarity=0.276 Sum_probs=25.0
Q ss_pred CCCeeEEEEcCCCccccCCCHHHHHHHHHHhh
Q 015712 288 CDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (402)
Q Consensus 288 l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~ 319 (402)
+.+-.++|+|||-.-+|..-...+...+..+.
T Consensus 481 l~~~~ILILDEaTSalD~~tE~~I~~~l~~l~ 512 (567)
T COG1132 481 LRNPPILILDEATSALDTETEALIQDALKKLL 512 (567)
T ss_pred hcCCCEEEEeccccccCHHhHHHHHHHHHHHh
Confidence 45568999999999888877777777776554
No 437
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=90.49 E-value=3 Score=40.82 Aligned_cols=42 Identities=14% Similarity=0.029 Sum_probs=29.1
Q ss_pred CCcHHHHHHHHHHH----cCC---cEEEEcCCCCChhhHhHHHHHHHHHh
Q 015712 163 VPSEIQCVGIPAVL----NGK---SVVLSSGSGSGRTLAYLLPLVQMLRR 205 (402)
Q Consensus 163 ~pt~iQ~~~i~~il----~g~---dvli~a~TGsGKTla~~lpil~~l~~ 205 (402)
.++|||...|..+. .|+ -+++.||.|.||+.. +..+...+..
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~l-A~~~a~~llC 51 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESL-VELFSRALLC 51 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHH-HHHHHHHHcC
Confidence 46788888887755 344 589999999999854 3444444443
No 438
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=90.40 E-value=0.34 Score=51.39 Aligned_cols=49 Identities=14% Similarity=0.208 Sum_probs=40.4
Q ss_pred CcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHh
Q 015712 179 KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 239 (402)
Q Consensus 179 ~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l 239 (402)
.++++.||||||||..|++|-+-.. +..+||+=|--|+........+..
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~------------~~S~VV~DpKGEl~~~Ta~~R~~~ 207 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFW------------EDSVVVHDIKLENYELTSGWREKQ 207 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhC------------CCCEEEEeCcHHHHHHHHHHHHHC
Confidence 4799999999999999999987642 346888889999998877766664
No 439
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=90.39 E-value=0.83 Score=44.64 Aligned_cols=91 Identities=18% Similarity=0.221 Sum_probs=50.0
Q ss_pred cCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCCh
Q 015712 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSS 256 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~ 256 (402)
.|+-+.+.+|+|+|||...+ .++..... .+..++|+..-..+..+ .++.+ ++..
T Consensus 54 ~G~iteI~G~~GsGKTtLaL-~~~~~~~~---------~g~~v~yId~E~~~~~~---~a~~l----Gvd~--------- 107 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLAL-HAIAEAQK---------AGGTAAFIDAEHALDPV---YARKL----GVDI--------- 107 (321)
T ss_pred CCeEEEEECCCCCCHHHHHH-HHHHHHHH---------cCCcEEEEcccchhHHH---HHHHc----CCCH---------
Confidence 45678999999999997654 44433333 36678887654444332 22332 2211
Q ss_pred HHHHHHhcCCccEEEeCchhhHHHhhc--CCCCCCCeeEEEEcCCCccc
Q 015712 257 KALEDVSNAPIGMLIATPSEVLQHIED--RNVSCDDIRYVVLDEADTLF 303 (402)
Q Consensus 257 ~~~~~~l~~~~~IlV~TP~~l~~~l~~--~~~~l~~l~~lVlDEad~~l 303 (402)
-++++..|...-+.+.. ..+.-..+++||||-+-.+.
T Consensus 108 ----------~~l~v~~p~~~eq~l~~~~~li~~~~~~lIVIDSv~al~ 146 (321)
T TIGR02012 108 ----------DNLLVSQPDTGEQALEIAETLVRSGAVDIIVVDSVAALV 146 (321)
T ss_pred ----------HHeEEecCCCHHHHHHHHHHHhhccCCcEEEEcchhhhc
Confidence 02445554433222211 11122468899999988765
No 440
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=90.35 E-value=0.28 Score=50.83 Aligned_cols=45 Identities=11% Similarity=0.200 Sum_probs=28.4
Q ss_pred CchhhHHHhhcCCCCCCCeeEEEEcCCCccccCCCHHHHHHHHHHh
Q 015712 273 TPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318 (402)
Q Consensus 273 TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~gf~~~i~~il~~l 318 (402)
+||-.-++--. ++...+-++.|+|||-..++.+....+-++++.+
T Consensus 572 S~GEqQRLa~A-RLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~ 616 (659)
T KOG0060|consen 572 SPGEQQRLAFA-RLFYHKPKFAILDECTSAVTEDVEGALYRKCREM 616 (659)
T ss_pred CHHHHHHHHHH-HHHhcCCceEEeechhhhccHHHHHHHHHHHHHc
Confidence 55544333222 2335677899999999887776666666666654
No 441
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=90.34 E-value=1.2 Score=46.05 Aligned_cols=69 Identities=16% Similarity=0.195 Sum_probs=36.9
Q ss_pred EEEeC-chhhHHHhhcCCCCCCCeeEEEEcCCCccccCCC-------HHHHHHHHHHhhhhhcccCCCCceEEEEeecc-
Q 015712 269 MLIAT-PSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGF-------GPEISKILNPLKDSALKSNGQGFQTILVTAAI- 339 (402)
Q Consensus 269 IlV~T-P~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~gf-------~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl- 339 (402)
++||- .-|+.+++....- +.-+.|.|||+|.+-..-. ...+.+++..+.-. .++--+|++.||-
T Consensus 376 m~VGvGArRVRdLF~aAk~--~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF-----~qNeGiIvigATNf 448 (752)
T KOG0734|consen 376 MFVGVGARRVRDLFAAAKA--RAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGF-----KQNEGIIVIGATNF 448 (752)
T ss_pred hhhcccHHHHHHHHHHHHh--cCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCc-----CcCCceEEEeccCC
Confidence 44443 3466676654322 3456788999998754321 11233444433211 1345688899984
Q ss_pred CchhH
Q 015712 340 AEMLG 344 (402)
Q Consensus 340 ~~~v~ 344 (402)
|+.+.
T Consensus 449 pe~LD 453 (752)
T KOG0734|consen 449 PEALD 453 (752)
T ss_pred hhhhh
Confidence 44433
No 442
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=90.30 E-value=6.6 Score=38.40 Aligned_cols=137 Identities=15% Similarity=0.205 Sum_probs=74.5
Q ss_pred EEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEc-Cc-hHHHHHHHHHHHHhhccCCcceee-ccCCCChH
Q 015712 181 VVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLC-TT-EESADQGFHMAKFISHCARLDSSM-ENGGVSSK 257 (402)
Q Consensus 181 vli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~-Pt-reLa~Qi~~~~~~l~~~~~~~v~~-~~gg~~~~ 257 (402)
++++|-.|+|||.+..= +.+.+.. .|.++++.+ -| |+=|.. .++.++...++.+.. -.|+.+..
T Consensus 142 il~vGVNG~GKTTTIaK--LA~~l~~--------~g~~VllaA~DTFRAaAiE---QL~~w~er~gv~vI~~~~G~DpAa 208 (340)
T COG0552 142 ILFVGVNGVGKTTTIAK--LAKYLKQ--------QGKSVLLAAGDTFRAAAIE---QLEVWGERLGVPVISGKEGADPAA 208 (340)
T ss_pred EEEEecCCCchHhHHHH--HHHHHHH--------CCCeEEEEecchHHHHHHH---HHHHHHHHhCCeEEccCCCCCcHH
Confidence 78999999999987432 2222221 355665544 33 444432 333444445666554 23443322
Q ss_pred HHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccC-CCHHHHHHHHHHhhhhhcccCCCCceEEEE-
Q 015712 258 ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDR-GFGPEISKILNPLKDSALKSNGQGFQTILV- 335 (402)
Q Consensus 258 ~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~-gf~~~i~~il~~l~~~~~~~~~~~~q~i~~- 335 (402)
- ..+.++.. ..+++++|++|=|-+|-.. +...++..|.+.+.... ...++.+++.
T Consensus 209 V------------------afDAi~~A--kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~---~~ap~e~llvl 265 (340)
T COG0552 209 V------------------AFDAIQAA--KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDD---PDAPHEILLVL 265 (340)
T ss_pred H------------------HHHHHHHH--HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhcccc---CCCCceEEEEE
Confidence 1 12222211 1234556666666665433 36677777777665321 1223445555
Q ss_pred eeccCchhHHHHHHHhhc
Q 015712 336 TAAIAEMLGEQLSSLMEC 353 (402)
Q Consensus 336 SATl~~~v~~~~~~~l~~ 353 (402)
=||...+....++.|-.-
T Consensus 266 DAttGqnal~QAk~F~ea 283 (340)
T COG0552 266 DATTGQNALSQAKIFNEA 283 (340)
T ss_pred EcccChhHHHHHHHHHHh
Confidence 999999888887777654
No 443
>PRK04841 transcriptional regulator MalT; Provisional
Probab=90.27 E-value=2.4 Score=47.13 Aligned_cols=44 Identities=9% Similarity=0.230 Sum_probs=30.9
Q ss_pred CeeEEEEcCCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCc
Q 015712 290 DIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 341 (402)
Q Consensus 290 ~l~~lVlDEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~ 341 (402)
.=-+||||++|.+-+......+..+++.++ .+..+|+.|-+.++
T Consensus 121 ~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~--------~~~~lv~~sR~~~~ 164 (903)
T PRK04841 121 QPLYLVIDDYHLITNPEIHEAMRFFLRHQP--------ENLTLVVLSRNLPP 164 (903)
T ss_pred CCEEEEEeCcCcCCChHHHHHHHHHHHhCC--------CCeEEEEEeCCCCC
Confidence 345899999998754445567777777765 46778787776543
No 444
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=90.18 E-value=1.4 Score=46.08 Aligned_cols=40 Identities=20% Similarity=0.318 Sum_probs=23.8
Q ss_pred CCCeeEEEEcCCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEe
Q 015712 288 CDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVT 336 (402)
Q Consensus 288 l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~S 336 (402)
....+++||||||.|. ......+++.+... +..+.+|+++
T Consensus 115 ~~~~KVvIIDEad~Lt----~~A~NALLK~LEEp-----p~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLT----KEAFNALLKTLEEP-----PSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCC----HHHHHHHHHHHhhc-----CCceEEEEEE
Confidence 3568999999999884 33344444444321 1345555554
No 445
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.14 E-value=3.7 Score=42.63 Aligned_cols=28 Identities=21% Similarity=0.342 Sum_probs=18.5
Q ss_pred CCCeeEEEEcCCCccccCCCHHHHHHHHHHhh
Q 015712 288 CDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (402)
Q Consensus 288 l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~ 319 (402)
...-+++||||||.|. ......++..+.
T Consensus 117 ~~~~KVvIIDEad~Lt----~~a~naLLk~LE 144 (486)
T PRK14953 117 KGKYKVYIIDEAHMLT----KEAFNALLKTLE 144 (486)
T ss_pred cCCeeEEEEEChhhcC----HHHHHHHHHHHh
Confidence 3567899999999774 233445555554
No 446
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=90.10 E-value=2.2 Score=43.01 Aligned_cols=17 Identities=29% Similarity=0.534 Sum_probs=14.4
Q ss_pred CcEEEEcCCCCChhhHh
Q 015712 179 KSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 179 ~dvli~a~TGsGKTla~ 195 (402)
+.+|+.||.|+|||...
T Consensus 37 ha~Lf~Gp~G~GKt~lA 53 (394)
T PRK07940 37 HAWLFTGPPGSGRSVAA 53 (394)
T ss_pred eEEEEECCCCCcHHHHH
Confidence 45899999999999754
No 447
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=90.05 E-value=0.68 Score=44.62 Aligned_cols=17 Identities=24% Similarity=0.331 Sum_probs=14.4
Q ss_pred CcEEEEcCCCCChhhHh
Q 015712 179 KSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 179 ~dvli~a~TGsGKTla~ 195 (402)
.++++.||.|+|||...
T Consensus 31 ~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLA 47 (305)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46999999999999643
No 448
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=90.00 E-value=0.72 Score=48.27 Aligned_cols=68 Identities=15% Similarity=0.238 Sum_probs=36.7
Q ss_pred EEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccC----C---CHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCch
Q 015712 270 LIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDR----G---FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEM 342 (402)
Q Consensus 270 lV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~----g---f~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~ 342 (402)
+||-.++-..-+..+.- -+.-+.|.|||+|.|... + -...+..++..|.-. ....++.++-||--++
T Consensus 585 YVGESErAVR~vFqRAR-~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl-----~~R~gV~viaATNRPD 658 (802)
T KOG0733|consen 585 YVGESERAVRQVFQRAR-ASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGL-----EERRGVYVIAATNRPD 658 (802)
T ss_pred HhhhHHHHHHHHHHHhh-cCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhccc-----ccccceEEEeecCCCc
Confidence 34544544444332211 234567889999998643 1 223344444444321 2456888889996554
Q ss_pred h
Q 015712 343 L 343 (402)
Q Consensus 343 v 343 (402)
+
T Consensus 659 i 659 (802)
T KOG0733|consen 659 I 659 (802)
T ss_pred c
Confidence 3
No 449
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=89.99 E-value=0.88 Score=50.03 Aligned_cols=19 Identities=26% Similarity=0.337 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCCChhhHh
Q 015712 177 NGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~ 195 (402)
.|..+++.||+|+|||...
T Consensus 346 ~~~~lll~GppG~GKT~lA 364 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSLG 364 (775)
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3557999999999999643
No 450
>CHL00176 ftsH cell division protein; Validated
Probab=89.96 E-value=0.79 Score=49.08 Aligned_cols=17 Identities=41% Similarity=0.618 Sum_probs=14.8
Q ss_pred CcEEEEcCCCCChhhHh
Q 015712 179 KSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 179 ~dvli~a~TGsGKTla~ 195 (402)
+.+++.||+|+|||+..
T Consensus 217 ~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLA 233 (638)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 56999999999999753
No 451
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=89.95 E-value=4.6 Score=43.55 Aligned_cols=113 Identities=13% Similarity=0.176 Sum_probs=71.7
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHh----cCCccEEEeCchhhHHHhhcCCCCCCC
Q 015712 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDD 290 (402)
Q Consensus 215 ~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~l~~~l~~~~~~l~~ 290 (402)
.+.++||.|+|+.-+..+...+... ++.+..++|+.....+...+ .....|+|||- . -.+++++.+
T Consensus 445 ~g~~viIf~~t~~~ae~L~~~L~~~----gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~-----~-L~rGfdlp~ 514 (652)
T PRK05298 445 KGERVLVTTLTKRMAEDLTDYLKEL----GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGIN-----L-LREGLDIPE 514 (652)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhhc----ceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeC-----H-HhCCccccC
Confidence 4779999999999999888877653 67888888887765444332 34678999883 2 235788999
Q ss_pred eeEEEEcCCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchh
Q 015712 291 IRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEML 343 (402)
Q Consensus 291 l~~lVlDEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v 343 (402)
++++|+=|++.. ||.......+..+.+.. +. .....+++....+..+
T Consensus 515 v~lVii~d~eif---G~~~~~~~yiqr~GR~g-R~--~~G~~i~~~~~~~~~~ 561 (652)
T PRK05298 515 VSLVAILDADKE---GFLRSERSLIQTIGRAA-RN--VNGKVILYADKITDSM 561 (652)
T ss_pred CcEEEEeCCccc---ccCCCHHHHHHHhcccc-CC--CCCEEEEEecCCCHHH
Confidence 999988777643 33233333444433211 11 2344555555554433
No 452
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=89.86 E-value=10 Score=37.33 Aligned_cols=87 Identities=13% Similarity=0.048 Sum_probs=44.0
Q ss_pred EEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHH
Q 015712 269 MLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLS 348 (402)
Q Consensus 269 IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~ 348 (402)
++|..|+.-.++.....-.+.-.+++||--+|..-..+....+..+-..+.....+...-.+.++.+||+=...+.++..
T Consensus 174 lvv~~p~~gd~iq~~k~gi~E~aDIiVVNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~ 253 (332)
T PRK09435 174 LLLQLPGAGDELQGIKKGIMELADLIVINKADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQ 253 (332)
T ss_pred EEEecCCchHHHHHHHhhhhhhhheEEeehhcccchhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHH
Confidence 35555554433322111112233579998888653333222233333333211000011236899999998888888877
Q ss_pred HHhhccc
Q 015712 349 SLMECLE 355 (402)
Q Consensus 349 ~~l~~~~ 355 (402)
.+..+..
T Consensus 254 ~I~~~~~ 260 (332)
T PRK09435 254 AIEDHRA 260 (332)
T ss_pred HHHHHHH
Confidence 7666543
No 453
>PRK09354 recA recombinase A; Provisional
Probab=89.86 E-value=1.4 Score=43.63 Aligned_cols=44 Identities=16% Similarity=0.165 Sum_probs=30.5
Q ss_pred cCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHH
Q 015712 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESAD 230 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~ 230 (402)
.|+-+.+.+|+|||||...+..+.+.. . .+..++|+..-..+-.
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~-~---------~G~~~~yId~E~s~~~ 102 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQ-K---------AGGTAAFIDAEHALDP 102 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-H---------cCCcEEEECCccchHH
Confidence 356789999999999986554444433 2 3678888877655543
No 454
>PRK09087 hypothetical protein; Validated
Probab=89.80 E-value=1.3 Score=40.92 Aligned_cols=40 Identities=10% Similarity=0.143 Sum_probs=25.2
Q ss_pred EEEEcCCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCc
Q 015712 293 YVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 341 (402)
Q Consensus 293 ~lVlDEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~ 341 (402)
+|+||++|.+- .-...+-.++..+.. .+.++|+.|.+-|.
T Consensus 90 ~l~iDDi~~~~--~~~~~lf~l~n~~~~-------~g~~ilits~~~p~ 129 (226)
T PRK09087 90 PVLIEDIDAGG--FDETGLFHLINSVRQ-------AGTSLLMTSRLWPS 129 (226)
T ss_pred eEEEECCCCCC--CCHHHHHHHHHHHHh-------CCCeEEEECCCChH
Confidence 79999999762 335566666766653 24566655555554
No 455
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=89.80 E-value=1.7 Score=44.71 Aligned_cols=72 Identities=21% Similarity=0.205 Sum_probs=55.1
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHh----cCCccEEEeCchhhHHHhhcCCCCCCC
Q 015712 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDD 290 (402)
Q Consensus 215 ~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~l~~~l~~~~~~l~~ 290 (402)
...++||.|+|+.-+..++..+... ++.+..++|+.+..++...+ ....+|||||- +-.+++++.+
T Consensus 244 ~~~~~lVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTd------v~~rGiDip~ 313 (456)
T PRK10590 244 NWQQVLVFTRTKHGANHLAEQLNKD----GIRSAAIHGNKSQGARTRALADFKSGDIRVLVATD------IAARGLDIEE 313 (456)
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHC----CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcc------HHhcCCCccc
Confidence 3568999999999999888777553 67889999998876665443 24678999994 1235788999
Q ss_pred eeEEEE
Q 015712 291 IRYVVL 296 (402)
Q Consensus 291 l~~lVl 296 (402)
+++||.
T Consensus 314 v~~VI~ 319 (456)
T PRK10590 314 LPHVVN 319 (456)
T ss_pred CCEEEE
Confidence 998874
No 456
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=89.80 E-value=1.2 Score=43.30 Aligned_cols=141 Identities=19% Similarity=0.195 Sum_probs=71.9
Q ss_pred CcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchH----HHHHHHHHHHHhhccCCcceeeccCCC
Q 015712 179 KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEE----SADQGFHMAKFISHCARLDSSMENGGV 254 (402)
Q Consensus 179 ~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~Ptre----La~Qi~~~~~~l~~~~~~~v~~~~gg~ 254 (402)
-|+++.+|||||||+.. -.+..++. -|.++-=+.|-. .-..+.+.+.++....++.|.-.-.|.
T Consensus 98 SNILLiGPTGsGKTlLA--qTLAk~Ln----------VPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGI 165 (408)
T COG1219 98 SNILLIGPTGSGKTLLA--QTLAKILN----------VPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGI 165 (408)
T ss_pred ccEEEECCCCCcHHHHH--HHHHHHhC----------CCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCe
Confidence 37999999999999753 23334432 445553333221 224455566666555555443222221
Q ss_pred ChHHHHHHhc---CCccEE--E---eCchhhHHHhhc--------CCCCCCCeeEEEEcCCCcccc-CCCHHHHHHHHHH
Q 015712 255 SSKALEDVSN---APIGML--I---ATPSEVLQHIED--------RNVSCDDIRYVVLDEADTLFD-RGFGPEISKILNP 317 (402)
Q Consensus 255 ~~~~~~~~l~---~~~~Il--V---~TP~~l~~~l~~--------~~~~l~~l~~lVlDEad~~l~-~gf~~~i~~il~~ 317 (402)
-+-...+.+. .++.|- | |.-+.|+.+++. ++..-.+=.+|-+|=-+-++= .|-+.-++.|+..
T Consensus 166 IyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~ 245 (408)
T COG1219 166 IYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKK 245 (408)
T ss_pred EEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCceeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHHH
Confidence 1111111111 112111 0 112344444432 111123347888888776544 3466778888765
Q ss_pred hhhhhcccCCCCceEEEEeeccC
Q 015712 318 LKDSALKSNGQGFQTILVTAAIA 340 (402)
Q Consensus 318 l~~~~~~~~~~~~q~i~~SATl~ 340 (402)
.- +...|+|+|...
T Consensus 246 R~---------~~~~iGF~a~~~ 259 (408)
T COG1219 246 RL---------GKKGIGFGAEVK 259 (408)
T ss_pred hc---------cCCccccccccc
Confidence 43 567899999875
No 457
>PRK06749 replicative DNA helicase; Provisional
Probab=89.64 E-value=4.1 Score=41.58 Aligned_cols=50 Identities=18% Similarity=0.141 Sum_probs=30.9
Q ss_pred eeEEEEcCCCccccC----C-CHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhH
Q 015712 291 IRYVVLDEADTLFDR----G-FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLG 344 (402)
Q Consensus 291 l~~lVlDEad~~l~~----g-f~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~ 344 (402)
..+||||=.+.|... + ....+..|.+.|+.... .-++.+|++| -++..++
T Consensus 300 ~~lvvIDyLqli~~~~~~~~~r~~ei~~isr~LK~lAk---el~vpVi~ls-QLnR~~e 354 (428)
T PRK06749 300 KILIIVDYLQLITGDPKHKGNRFQEISEISRKLKLLAR---ELNVCVVALS-QLSRSVE 354 (428)
T ss_pred CcEEEEeChhhcCCCCCCCCCHHHHHHHHHHHHHHHHH---HhCCeEEEEE-ecCcccc
Confidence 459999999977531 1 23557777777665331 2367777777 4555443
No 458
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=89.51 E-value=0.54 Score=42.01 Aligned_cols=32 Identities=31% Similarity=0.381 Sum_probs=24.8
Q ss_pred CcHHHHHHHHH-HHcCCcEEEEcCCCCChhhHh
Q 015712 164 PSEIQCVGIPA-VLNGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 164 pt~iQ~~~i~~-il~g~dvli~a~TGsGKTla~ 195 (402)
.++-|...+.. +..|..++++++||||||..+
T Consensus 10 ~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 10 FSPLQAAYLWLAVEARKNILISGGTGSGKTTLL 42 (186)
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 45666666665 446889999999999999754
No 459
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=89.49 E-value=2.1 Score=46.78 Aligned_cols=52 Identities=23% Similarity=0.403 Sum_probs=30.5
Q ss_pred ccccccCCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhH
Q 015712 140 VSSFQELGLKAEMIKAVEKM---GLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLA 194 (402)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~---g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla 194 (402)
..+|++++--...++.+.++ -+..|.-++... +..++.+++.||+|+|||+.
T Consensus 174 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~g---i~~~~giLL~GppGtGKT~l 228 (733)
T TIGR01243 174 KVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLG---IEPPKGVLLYGPPGTGKTLL 228 (733)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcC---CCCCceEEEECCCCCChHHH
Confidence 45788887666665555443 111111111111 13457899999999999965
No 460
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=89.42 E-value=1.2 Score=44.60 Aligned_cols=62 Identities=16% Similarity=0.213 Sum_probs=34.6
Q ss_pred ccccccCC-CCHHHHHHHHHCCCCCCcHHHHHHHHH---HHcCCcEEEEcCCCCChhhHhHHHHHHHHHh
Q 015712 140 VSSFQELG-LKAEMIKAVEKMGLFVPSEIQCVGIPA---VLNGKSVVLSSGSGSGRTLAYLLPLVQMLRR 205 (402)
Q Consensus 140 ~~~f~~l~-l~~~l~~~l~~~g~~~pt~iQ~~~i~~---il~g~dvli~a~TGsGKTla~~lpil~~l~~ 205 (402)
...|++|. +++.-...|... .+.++=.++|.. +-.|+-.+|.||.|+|||.. +--+...+..
T Consensus 130 r~~f~~l~p~~p~~R~~le~~---~~~~~~~rvID~l~PIGkGQR~lIvgppGvGKTTL-aK~Ian~I~~ 195 (416)
T PRK09376 130 RPLFENLTPLYPNERLRLETG---NPEDLSTRIIDLIAPIGKGQRGLIVAPPKAGKTVL-LQNIANSITT 195 (416)
T ss_pred CCCcccCCCCChhhcccccCC---CCcccceeeeeeecccccCceEEEeCCCCCChhHH-HHHHHHHHHh
Confidence 45677764 333222222210 134444455444 44788999999999999963 3345554443
No 461
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=89.39 E-value=3.7 Score=40.30 Aligned_cols=25 Identities=20% Similarity=0.313 Sum_probs=17.4
Q ss_pred CcEEEEcCCCCChhhHhHHHHHHHHH
Q 015712 179 KSVVLSSGSGSGRTLAYLLPLVQMLR 204 (402)
Q Consensus 179 ~dvli~a~TGsGKTla~~lpil~~l~ 204 (402)
+.+|+.||.|+|||.. +..+...+.
T Consensus 37 ~~~Ll~G~~G~GKt~~-a~~la~~l~ 61 (355)
T TIGR02397 37 HAYLFSGPRGTGKTSI-ARIFAKALN 61 (355)
T ss_pred eEEEEECCCCCCHHHH-HHHHHHHhc
Confidence 3579999999999964 344444443
No 462
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.38 E-value=3.1 Score=44.42 Aligned_cols=28 Identities=18% Similarity=0.344 Sum_probs=19.1
Q ss_pred CCCeeEEEEcCCCccccCCCHHHHHHHHHHhh
Q 015712 288 CDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (402)
Q Consensus 288 l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~ 319 (402)
+..-+++||||+|.|.. .....++..+.
T Consensus 119 ~~~~KVvIIdea~~Ls~----~a~naLLK~LE 146 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQ----AAFNAFLKTLE 146 (614)
T ss_pred cCCcEEEEEECcccCCH----HHHHHHHHHHh
Confidence 45678999999998842 34445555554
No 463
>PRK13695 putative NTPase; Provisional
Probab=89.33 E-value=7.3 Score=34.08 Aligned_cols=17 Identities=24% Similarity=0.417 Sum_probs=14.5
Q ss_pred cEEEEcCCCCChhhHhH
Q 015712 180 SVVLSSGSGSGRTLAYL 196 (402)
Q Consensus 180 dvli~a~TGsGKTla~~ 196 (402)
.+++.++.|+|||....
T Consensus 2 ~i~ltG~~G~GKTTll~ 18 (174)
T PRK13695 2 KIGITGPPGVGKTTLVL 18 (174)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998655
No 464
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=89.27 E-value=0.81 Score=50.00 Aligned_cols=53 Identities=23% Similarity=0.327 Sum_probs=31.7
Q ss_pred ccccccCCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHh
Q 015712 140 VSSFQELGLKAEMIKAVEKM---GLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~---g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~ 195 (402)
..+|++++..+.+.+.|.+. .+..+.-++... +...+.+++.||+|+|||+..
T Consensus 449 ~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g---~~~~~giLL~GppGtGKT~la 504 (733)
T TIGR01243 449 NVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMG---IRPPKGVLLFGPPGTGKTLLA 504 (733)
T ss_pred ccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCceEEEECCCCCCHHHHH
Confidence 44788888777777776653 122221111111 112356999999999999753
No 465
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=89.21 E-value=1.3 Score=43.37 Aligned_cols=44 Identities=11% Similarity=0.162 Sum_probs=29.8
Q ss_pred cCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHH
Q 015712 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESAD 230 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~ 230 (402)
.|+-+.+.+|+|+|||... +.++..... .+..++|+..-..+-.
T Consensus 54 ~G~iteI~Gp~GsGKTtLa-l~~~~~~~~---------~g~~~vyId~E~~~~~ 97 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLA-LHAIAEAQK---------LGGTVAFIDAEHALDP 97 (325)
T ss_pred CCeEEEEECCCCCCHHHHH-HHHHHHHHH---------cCCCEEEECccccHHH
Confidence 3567899999999999654 444443333 3667888887555443
No 466
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=89.14 E-value=1.5 Score=47.98 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCCChhhHh
Q 015712 178 GKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~ 195 (402)
..++|+.||+|+|||...
T Consensus 207 ~~n~LLvGppGvGKT~la 224 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIA 224 (758)
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 458999999999999764
No 467
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=89.06 E-value=1.2 Score=44.91 Aligned_cols=29 Identities=14% Similarity=0.292 Sum_probs=20.7
Q ss_pred HHcCCcEEEEcCCCCChhhHhHHHHHHHHH
Q 015712 175 VLNGKSVVLSSGSGSGRTLAYLLPLVQMLR 204 (402)
Q Consensus 175 il~g~dvli~a~TGsGKTla~~lpil~~l~ 204 (402)
+-.|+-+++.||+|+|||... -.+...+.
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL~-~~i~~~I~ 193 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVLL-QKIAQAIT 193 (415)
T ss_pred eCCCCEEEEECCCCCChhHHH-HHHHHhhc
Confidence 346888999999999999743 33444443
No 468
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=88.98 E-value=19 Score=35.68 Aligned_cols=28 Identities=18% Similarity=0.383 Sum_probs=20.9
Q ss_pred cccccccccCCCCHHHHHHHHHCCCCCC
Q 015712 137 AEVVSSFQELGLKAEMIKAVEKMGLFVP 164 (402)
Q Consensus 137 ~~~~~~f~~l~l~~~l~~~l~~~g~~~p 164 (402)
...+......||++.+++.|.+.||...
T Consensus 28 ~~~~~~l~~~g~~~~~~~kL~~~g~~tv 55 (344)
T PLN03187 28 FESIDKLISQGINAGDVKKLQDAGIYTC 55 (344)
T ss_pred ccCHHHHhhCCCCHHHHHHHHHcCCCcH
Confidence 4456667777888888888888888653
No 469
>PHA00012 I assembly protein
Probab=88.93 E-value=4.9 Score=39.34 Aligned_cols=56 Identities=18% Similarity=0.335 Sum_probs=33.3
Q ss_pred CCCCeeEEEEcCCCccccC-CCH----HHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHH
Q 015712 287 SCDDIRYVVLDEADTLFDR-GFG----PEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSL 350 (402)
Q Consensus 287 ~l~~l~~lVlDEad~~l~~-gf~----~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~ 350 (402)
+...-.++||||||..+.. +++ ..+...+....+ .+.-++++|-.+. .+...++..
T Consensus 78 dep~gsLlVlDEaq~~fp~R~~~sk~p~~vie~l~~hRh-------~G~DvilITQ~ps-~VDs~IR~l 138 (361)
T PHA00012 78 DESKNGLLVLDECGTWFNSRSWNDKERQPVIDWFLHARK-------LGWDIIFIIQDIS-IMDKQAREA 138 (361)
T ss_pred CCCCCcEEEEECcccccCCCCcCcCCcHHHHHHHHHhcc-------CCceEEEEcCCHH-HHhHHHHHh
Confidence 3456679999999998863 222 334444444332 3566777776654 455555443
No 470
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=88.86 E-value=4.9 Score=42.51 Aligned_cols=28 Identities=18% Similarity=0.375 Sum_probs=19.2
Q ss_pred CCCeeEEEEcCCCccccCCCHHHHHHHHHHhh
Q 015712 288 CDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (402)
Q Consensus 288 l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~ 319 (402)
...-+++||||+|.|. ......++..+.
T Consensus 117 ~~~~KVvIIDEa~~Ls----~~a~naLLK~LE 144 (563)
T PRK06647 117 SSRYRVYIIDEVHMLS----NSAFNALLKTIE 144 (563)
T ss_pred cCCCEEEEEEChhhcC----HHHHHHHHHhhc
Confidence 3567899999999874 234555555554
No 471
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=88.86 E-value=3.6 Score=38.69 Aligned_cols=30 Identities=27% Similarity=0.474 Sum_probs=21.4
Q ss_pred HHHHcCC-cEEEEcCCCCChhhHhHHHHHHHH
Q 015712 173 PAVLNGK-SVVLSSGSGSGRTLAYLLPLVQML 203 (402)
Q Consensus 173 ~~il~g~-dvli~a~TGsGKTla~~lpil~~l 203 (402)
+.+..|+ =+.++|+-|||||..-- .++..+
T Consensus 45 ~~i~d~qg~~~vtGevGsGKTv~~R-al~~s~ 75 (269)
T COG3267 45 AAIADGQGILAVTGEVGSGKTVLRR-ALLASL 75 (269)
T ss_pred HHHhcCCceEEEEecCCCchhHHHH-HHHHhc
Confidence 3455566 68999999999998765 444443
No 472
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=88.80 E-value=1.4 Score=45.35 Aligned_cols=75 Identities=17% Similarity=0.284 Sum_probs=58.0
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHh----cCCccEEEeCchhhHHHhhcCCCCCCC
Q 015712 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDD 290 (402)
Q Consensus 215 ~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~l~~~l~~~~~~l~~ 290 (402)
.+..+||.|+|+..+..++..+... ++.+..++|+.+..++...+ ...++|||+|-- -..++++.+
T Consensus 225 ~~~~~IIF~~s~~~~e~la~~L~~~----g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~------~~~GID~p~ 294 (470)
T TIGR00614 225 KGKSGIIYCPSRKKSEQVTASLQNL----GIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVA------FGMGINKPD 294 (470)
T ss_pred CCCceEEEECcHHHHHHHHHHHHhc----CCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEech------hhccCCccc
Confidence 3567899999999999998887654 77889999998877665433 457899999952 235788899
Q ss_pred eeEEEEcCC
Q 015712 291 IRYVVLDEA 299 (402)
Q Consensus 291 l~~lVlDEa 299 (402)
+++||.-..
T Consensus 295 V~~VI~~~~ 303 (470)
T TIGR00614 295 VRFVIHYSL 303 (470)
T ss_pred ceEEEEeCC
Confidence 999986544
No 473
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=88.79 E-value=2.1 Score=43.88 Aligned_cols=74 Identities=16% Similarity=0.264 Sum_probs=56.9
Q ss_pred CCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHh----cCCccEEEeCchhhHHHhhcCCCCCCCe
Q 015712 216 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDDI 291 (402)
Q Consensus 216 ~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~l~~~l~~~~~~l~~l 291 (402)
+.++||.|+|+.-+..++..+... ++.+..++|+.+..++...+ ....+|||||- +-.+++++.++
T Consensus 242 ~~~~lVF~~t~~~~~~l~~~L~~~----~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTd------v~~rGiDi~~v 311 (460)
T PRK11776 242 PESCVVFCNTKKECQEVADALNAQ----GFSALALHGDLEQRDRDQVLVRFANRSCSVLVATD------VAARGLDIKAL 311 (460)
T ss_pred CCceEEEECCHHHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEec------ccccccchhcC
Confidence 457999999999999988877654 67889999999877665543 24578999994 23457888899
Q ss_pred eEEEEcCC
Q 015712 292 RYVVLDEA 299 (402)
Q Consensus 292 ~~lVlDEa 299 (402)
++||.-+.
T Consensus 312 ~~VI~~d~ 319 (460)
T PRK11776 312 EAVINYEL 319 (460)
T ss_pred CeEEEecC
Confidence 98886443
No 474
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=88.71 E-value=0.42 Score=48.44 Aligned_cols=33 Identities=18% Similarity=0.371 Sum_probs=23.2
Q ss_pred HHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHh
Q 015712 172 IPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRR 205 (402)
Q Consensus 172 i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~ 205 (402)
+|.-...+++++.|+||||||.. +..++..+..
T Consensus 36 ~~~~~~~~h~~i~g~tGsGKt~~-i~~l~~~~~~ 68 (410)
T cd01127 36 FPKDAEEAHTMIIGTTGTGKTTQ-IRELLASIRA 68 (410)
T ss_pred CCcchhhccEEEEcCCCCCHHHH-HHHHHHHHHh
Confidence 34444567999999999999975 4445555543
No 475
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=88.65 E-value=0.66 Score=45.22 Aligned_cols=75 Identities=21% Similarity=0.238 Sum_probs=46.8
Q ss_pred ccccccccCCCCHHHHHHHHHCCCCCCcHHHHHH-HHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCC
Q 015712 138 EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVG-IPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMH 216 (402)
Q Consensus 138 ~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~-i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~ 216 (402)
-.+..|..-+++..-+ .+. ..+++.|..- |-++..+++++++++||||||.. +.+++..+-. .
T Consensus 107 ~~IRk~~~~~~t~~~l---~~~--gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~-lnall~~Ip~----------~ 170 (312)
T COG0630 107 FTIRKFSDEPITPEDL---IEY--GTISPEQAAYLWLAIEARKSIIICGGTASGKTTL-LNALLDFIPP----------E 170 (312)
T ss_pred EEEEcCCCCCCCHHHH---hhc--CCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHH-HHHHHHhCCc----------h
Confidence 3455666666654333 223 3456666555 45566789999999999999964 4555554432 3
Q ss_pred CeEEEEcCchHH
Q 015712 217 PRAIVLCTTEES 228 (402)
Q Consensus 217 ~~~Lvl~PtreL 228 (402)
.+.+.+--|.|+
T Consensus 171 ~rivtIEdt~E~ 182 (312)
T COG0630 171 ERIVTIEDTPEL 182 (312)
T ss_pred hcEEEEeccccc
Confidence 456666666555
No 476
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=88.57 E-value=3.5 Score=41.43 Aligned_cols=52 Identities=29% Similarity=0.431 Sum_probs=28.2
Q ss_pred ccccccCCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhH
Q 015712 140 VSSFQELGLKAEMIKAVEKM---GLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLA 194 (402)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~---g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla 194 (402)
...|++++--+..++.+.+. .+..|-.++... +..-+.+++.||+|+|||+.
T Consensus 127 ~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g---~~~p~gvLL~GppGtGKT~l 181 (389)
T PRK03992 127 NVTYEDIGGLEEQIREVREAVELPLKKPELFEEVG---IEPPKGVLLYGPPGTGKTLL 181 (389)
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcC---CCCCCceEEECCCCCChHHH
Confidence 34677777555555544432 122221111110 11235799999999999975
No 477
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=88.47 E-value=0.48 Score=47.62 Aligned_cols=29 Identities=21% Similarity=0.448 Sum_probs=21.0
Q ss_pred HcCCcEEEEcCCCCChhhHhHHHHHHHHHh
Q 015712 176 LNGKSVVLSSGSGSGRTLAYLLPLVQMLRR 205 (402)
Q Consensus 176 l~g~dvli~a~TGsGKTla~~lpil~~l~~ 205 (402)
...+++++.|.||||||. ++-.++..+..
T Consensus 13 ~e~~~~li~G~~GsGKT~-~i~~ll~~~~~ 41 (386)
T PF10412_consen 13 SENRHILIIGATGSGKTQ-AIRHLLDQIRA 41 (386)
T ss_dssp GGGG-EEEEE-TTSSHHH-HHHHHHHHHHH
T ss_pred hhhCcEEEECCCCCCHHH-HHHHHHHHHHH
Confidence 446789999999999997 44677777765
No 478
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=88.28 E-value=2 Score=46.54 Aligned_cols=27 Identities=19% Similarity=0.374 Sum_probs=18.6
Q ss_pred CCeeEEEEcCCCccccCCCHHHHHHHHHHhh
Q 015712 289 DDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (402)
Q Consensus 289 ~~l~~lVlDEad~~l~~gf~~~i~~il~~l~ 319 (402)
..-+++||||||.|. ......++..|.
T Consensus 117 g~~KV~IIDEa~~LT----~~A~NALLKtLE 143 (725)
T PRK07133 117 SKYKIYIIDEVHMLS----KSAFNALLKTLE 143 (725)
T ss_pred CCCEEEEEEChhhCC----HHHHHHHHHHhh
Confidence 567899999999874 234555555554
No 479
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=88.27 E-value=7.9 Score=37.40 Aligned_cols=57 Identities=11% Similarity=0.063 Sum_probs=34.3
Q ss_pred CeeEEEEcCCCccccCC---CHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHH
Q 015712 290 DIRYVVLDEADTLFDRG---FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQ 346 (402)
Q Consensus 290 ~l~~lVlDEad~~l~~g---f~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~ 346 (402)
.-..|.|||+|.+.... -.+..++|-..+--........+--++++.||-.+++.+.
T Consensus 225 kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDs 284 (439)
T KOG0739|consen 225 KPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDS 284 (439)
T ss_pred CCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHH
Confidence 34578899999887543 3344555544443333233334556888899977765544
No 480
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=88.26 E-value=1.2 Score=46.17 Aligned_cols=54 Identities=24% Similarity=0.292 Sum_probs=30.5
Q ss_pred cccccccCCCCHHHHHHHHHCC--CCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHh
Q 015712 139 VVSSFQELGLKAEMIKAVEKMG--LFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 139 ~~~~f~~l~l~~~l~~~l~~~g--~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~ 195 (402)
+..+|+++.-.+.+...+.+.- +..|..++... ....+.+++.||+|+|||+..
T Consensus 50 ~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g---~~~~~giLL~GppGtGKT~la 105 (495)
T TIGR01241 50 PKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLG---AKIPKGVLLVGPPGTGKTLLA 105 (495)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcC---CCCCCcEEEECCCCCCHHHHH
Confidence 3556888876666555444320 22222222211 112357999999999999753
No 481
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=88.25 E-value=2 Score=45.91 Aligned_cols=73 Identities=14% Similarity=0.246 Sum_probs=56.2
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHh----cCCccEEEeCchhhHHHhhcCCCCCCC
Q 015712 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDD 290 (402)
Q Consensus 215 ~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~l~~~l~~~~~~l~~ 290 (402)
.+..+||.|+|+.-+.+++..+... ++.+..++|+.+...+...+ ....+|||+|.- -..++++.+
T Consensus 235 ~~~~~IIFc~tr~~~e~la~~L~~~----g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a------~~~GIDip~ 304 (607)
T PRK11057 235 RGKSGIIYCNSRAKVEDTAARLQSR----GISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVA------FGMGINKPN 304 (607)
T ss_pred CCCCEEEEECcHHHHHHHHHHHHhC----CCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEech------hhccCCCCC
Confidence 4568899999999999988877663 67889999999877655443 346789999962 135788888
Q ss_pred eeEEEEc
Q 015712 291 IRYVVLD 297 (402)
Q Consensus 291 l~~lVlD 297 (402)
+++||.-
T Consensus 305 V~~VI~~ 311 (607)
T PRK11057 305 VRFVVHF 311 (607)
T ss_pred cCEEEEe
Confidence 9888753
No 482
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=88.24 E-value=1.1 Score=47.33 Aligned_cols=32 Identities=25% Similarity=0.301 Sum_probs=24.3
Q ss_pred CCCeeEEEEcCCCccccCCCHHHHHHHHHHhh
Q 015712 288 CDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (402)
Q Consensus 288 l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~ 319 (402)
+.+-+.+++||+-.-+|......+...+..+.
T Consensus 485 l~~~~illLDEpts~LD~~~~~~i~~~L~~~~ 516 (571)
T TIGR02203 485 LKDAPILILDEATSALDNESERLVQAALERLM 516 (571)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHHh
Confidence 45668999999998888877777776666553
No 483
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=88.23 E-value=0.97 Score=47.73 Aligned_cols=31 Identities=26% Similarity=0.341 Sum_probs=23.0
Q ss_pred CCCeeEEEEcCCCccccCCCHHHHHHHHHHh
Q 015712 288 CDDIRYVVLDEADTLFDRGFGPEISKILNPL 318 (402)
Q Consensus 288 l~~l~~lVlDEad~~l~~gf~~~i~~il~~l 318 (402)
+++-+.+++||+-.-+|......+...+..+
T Consensus 492 ~~~~~ililDEpts~lD~~~~~~i~~~l~~~ 522 (576)
T TIGR02204 492 LKDAPILLLDEATSALDAESEQLVQQALETL 522 (576)
T ss_pred HhCCCeEEEeCcccccCHHHHHHHHHHHHHH
Confidence 4567899999998888877666666666554
No 484
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=88.16 E-value=1.4 Score=44.37 Aligned_cols=128 Identities=22% Similarity=0.208 Sum_probs=63.6
Q ss_pred CcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHH----HHHHHHHHHhhccCCcceeeccCCC
Q 015712 179 KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESA----DQGFHMAKFISHCARLDSSMENGGV 254 (402)
Q Consensus 179 ~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa----~Qi~~~~~~l~~~~~~~v~~~~gg~ 254 (402)
-|+|+.+|||||||+.. --|..++ .-|.||-=|.|-..| ..+...+.++....+++|.-.-.|.
T Consensus 227 SNvLllGPtGsGKTlla--qTLAr~l----------dVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGI 294 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLA--QTLARVL----------DVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGI 294 (564)
T ss_pred ccEEEECCCCCchhHHH--HHHHHHh----------CCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCe
Confidence 36999999999999753 2333443 356666655554433 3455566666555554443222221
Q ss_pred ChHHHHHHhcC---CccEE--E---eCchhhHHHhhcCCCC--------CCCeeEEEEcCCCccc-cCCCHHHHHHHHHH
Q 015712 255 SSKALEDVSNA---PIGML--I---ATPSEVLQHIEDRNVS--------CDDIRYVVLDEADTLF-DRGFGPEISKILNP 317 (402)
Q Consensus 255 ~~~~~~~~l~~---~~~Il--V---~TP~~l~~~l~~~~~~--------l~~l~~lVlDEad~~l-~~gf~~~i~~il~~ 317 (402)
-.-...+.+.. +.++. | |.-..|+.+++...++ ...=+.|.||=-|-++ -.|-+..+++++..
T Consensus 295 VflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~r 374 (564)
T KOG0745|consen 295 VFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISR 374 (564)
T ss_pred EEEehhhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHH
Confidence 11111111110 01110 0 1123444554322211 2234678889888654 35666667777654
Q ss_pred h
Q 015712 318 L 318 (402)
Q Consensus 318 l 318 (402)
-
T Consensus 375 R 375 (564)
T KOG0745|consen 375 R 375 (564)
T ss_pred h
Confidence 3
No 485
>PRK07773 replicative DNA helicase; Validated
Probab=88.09 E-value=4.1 Score=45.57 Aligned_cols=143 Identities=16% Similarity=0.136 Sum_probs=69.5
Q ss_pred CCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeec-cCCCCh
Q 015712 178 GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSME-NGGVSS 256 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~-~gg~~~ 256 (402)
|.=+++.|++|+|||.. ++-++..+... .+..++|++ .-.-..|+...+... ..++....+ .|..+.
T Consensus 217 G~livIagrPg~GKT~f-al~ia~~~a~~--------~~~~V~~fS-lEms~~ql~~R~~s~--~~~i~~~~i~~g~l~~ 284 (886)
T PRK07773 217 GQLIIVAARPSMGKTTF-GLDFARNCAIR--------HRLAVAIFS-LEMSKEQLVMRLLSA--EAKIKLSDMRSGRMSD 284 (886)
T ss_pred CcEEEEEeCCCCCcHHH-HHHHHHHHHHh--------cCCeEEEEe-cCCCHHHHHHHHHHH--hcCCCHHHHhcCCCCH
Confidence 34588999999999964 45544443321 234555554 233334444433322 123322222 232332
Q ss_pred HHHH------HHhcCCccEEEe-Cc----hhhHHHhhcCCCCCCCeeEEEEcCCCccccC----CCHHHHHHHHHHhhhh
Q 015712 257 KALE------DVSNAPIGMLIA-TP----SEVLQHIEDRNVSCDDIRYVVLDEADTLFDR----GFGPEISKILNPLKDS 321 (402)
Q Consensus 257 ~~~~------~~l~~~~~IlV~-TP----~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~----gf~~~i~~il~~l~~~ 321 (402)
.+.. ..+.. ..|.|. +| ..+...+.+-. .-..+++||||=.+.|... .....+..|.+.|+..
T Consensus 285 ~~~~~~~~a~~~l~~-~~i~i~d~~~~~i~~i~~~~r~~~-~~~~~~lvvIDyLql~~~~~~~~~r~~ei~~isr~LK~l 362 (886)
T PRK07773 285 DDWTRLARAMGEISE-APIFIDDTPNLTVMEIRAKARRLR-QEANLGLIVVDYLQLMTSGKKYENRQQEVSEISRHLKLL 362 (886)
T ss_pred HHHHHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHH-HhcCCCEEEEcchhhcCCCCCCCCHHHHHHHHHHHHHHH
Confidence 2211 12222 335543 33 33333222111 1135899999999987532 1334567777666633
Q ss_pred hcccCCCCceEEEEee
Q 015712 322 ALKSNGQGFQTILVTA 337 (402)
Q Consensus 322 ~~~~~~~~~q~i~~SA 337 (402)
.. .-++.+|++|-
T Consensus 363 Ak---el~vpvi~lsQ 375 (886)
T PRK07773 363 AK---ELEVPVVALSQ 375 (886)
T ss_pred HH---HHCCcEEEecc
Confidence 21 12667777764
No 486
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=87.99 E-value=1.2 Score=43.96 Aligned_cols=64 Identities=17% Similarity=0.240 Sum_probs=41.0
Q ss_pred HHHHHHCCCCCCcHHHHHHHHHHH-cCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHH
Q 015712 153 IKAVEKMGLFVPSEIQCVGIPAVL-NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESA 229 (402)
Q Consensus 153 ~~~l~~~g~~~pt~iQ~~~i~~il-~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa 229 (402)
+..|.+.|+ +++.+...+..+. .+.+++++++||+|||..+ -.++..+. ...+.+++--+.||.
T Consensus 154 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTll-~al~~~i~----------~~~riv~iEd~~El~ 218 (340)
T TIGR03819 154 LDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTLL-SALLALVA----------PDERIVLVEDAAELR 218 (340)
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHH-HHHHccCC----------CCCcEEEECCcceec
Confidence 555666676 3456666666544 5679999999999998743 33333221 234677777777763
No 487
>PHA00149 DNA encapsidation protein
Probab=87.89 E-value=6.9 Score=37.42 Aligned_cols=136 Identities=12% Similarity=0.102 Sum_probs=72.7
Q ss_pred EEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHH
Q 015712 182 VLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 261 (402)
Q Consensus 182 li~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~ 261 (402)
++.|.-|-|||.+..--++..+.. .|-+-|+|--...=....-..+........-.-..+-|. .
T Consensus 21 fviG~RgiGKTya~k~~~~k~~i~---------kgeqfiYLRr~k~El~~k~~Ff~d~~~~~~~~~F~Vkg~-------k 84 (331)
T PHA00149 21 FVIGARGIGKTYALKKYLIKRFIK---------KGEQFIYLRRYKSELKKKSKFFADIAQEFPNTEFEVKGR-------K 84 (331)
T ss_pred EEEeccccchhhHHHHHHHHHHHh---------cCcEEEEEEecchhhhhhhhhhHHHHHhCCCCceEEEcc-------E
Confidence 455889999999987777777776 577888875443222112233333222211111112221 1
Q ss_pred HhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCc-cccCCCH----HHHHHHHHHhhhhhcccCCCCceEEEEe
Q 015712 262 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT-LFDRGFG----PEISKILNPLKDSALKSNGQGFQTILVT 336 (402)
Q Consensus 262 ~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~-~l~~gf~----~~i~~il~~l~~~~~~~~~~~~q~i~~S 336 (402)
..-.+-.|....|-..+..++ .....++.+|++||.-. --.+++. ..+..++..+.+.+ .++.++++|
T Consensus 85 i~~~~k~igy~i~LS~~q~~K--s~~Yp~V~~I~fDEfi~dk~n~~YlpNE~~allnli~tV~R~R-----e~vr~~~ls 157 (331)
T PHA00149 85 IYIKGKLIGYAIPLSTWQALK--SSAYPNVSTIFFDEFIREKDNKRYLPNEVDALLNLIDTVFRAR-----ERVRCICLS 157 (331)
T ss_pred EEEcCeEEEEEEehhhHHhhc--ccCCCceEEEEeeeeeecCcccccCCchHHHHHHHHHHHHHhh-----cCeEEEEEc
Confidence 112233455555555455444 55678999999999864 2122322 22333333333332 478999998
Q ss_pred eccC
Q 015712 337 AAIA 340 (402)
Q Consensus 337 ATl~ 340 (402)
...+
T Consensus 158 Na~~ 161 (331)
T PHA00149 158 NAVS 161 (331)
T ss_pred Cccc
Confidence 7543
No 488
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=87.76 E-value=3.2 Score=33.71 Aligned_cols=76 Identities=16% Similarity=0.246 Sum_probs=54.9
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHh----cCCccEEEeCchhhHHHhhcCCCCCCC
Q 015712 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDD 290 (402)
Q Consensus 215 ~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~l~~~l~~~~~~l~~ 290 (402)
.+.++||.++++..+.++...+.. .+..+..++|+.+........ .....|+++|.- ...++++..
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~------~~~G~d~~~ 96 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRK----PGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDV------IARGIDLPN 96 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHh----cCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcCh------hhcCcChhh
Confidence 356899999999999998888876 356788888887755444332 234579998852 234677888
Q ss_pred eeEEEEcCCC
Q 015712 291 IRYVVLDEAD 300 (402)
Q Consensus 291 l~~lVlDEad 300 (402)
++++|+...+
T Consensus 97 ~~~vi~~~~~ 106 (131)
T cd00079 97 VSVVINYDLP 106 (131)
T ss_pred CCEEEEeCCC
Confidence 8888887764
No 489
>KOG3089 consensus Predicted DEAD-box-containing helicase [General function prediction only]
Probab=87.66 E-value=0.56 Score=42.68 Aligned_cols=34 Identities=15% Similarity=0.384 Sum_probs=30.5
Q ss_pred CCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcC
Q 015712 265 APIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 298 (402)
Q Consensus 265 ~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDE 298 (402)
+..++-||||+|+..++..+.+.+..+.+||+|=
T Consensus 195 ~~v~~gIgTp~Ri~~lv~~~~f~~~~lk~iIlD~ 228 (271)
T KOG3089|consen 195 RVVHLGIGTPGRIKELVKQGGFNLSPLKFIILDW 228 (271)
T ss_pred cceeEeecCcHHHHHHHHhcCCCCCcceeEEeec
Confidence 3567889999999999999999999999999984
No 490
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=87.56 E-value=0.58 Score=50.29 Aligned_cols=49 Identities=12% Similarity=0.150 Sum_probs=36.8
Q ss_pred CcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHh
Q 015712 179 KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 239 (402)
Q Consensus 179 ~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l 239 (402)
.++++.||||||||..|++|-+-.. ...+||+=|--|+........+..
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~------------~gS~VV~DpKGE~~~~Ta~~R~~~ 188 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTF------------KGSVIALDVKGELFELTSRARKAS 188 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcC------------CCCEEEEeCCchHHHHHHHHHHhC
Confidence 4899999999999999999986532 236777778877777665555443
No 491
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=87.56 E-value=0.42 Score=42.18 Aligned_cols=25 Identities=16% Similarity=0.437 Sum_probs=17.7
Q ss_pred cEEEEcCCCCChhhHhHHHHHHHHHh
Q 015712 180 SVVLSSGSGSGRTLAYLLPLVQMLRR 205 (402)
Q Consensus 180 dvli~a~TGsGKTla~~lpil~~l~~ 205 (402)
++++.|+.|+|||... .-+++.+..
T Consensus 1 ~i~iTG~pG~GKTTll-~k~i~~l~~ 25 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLL-KKVIEELKK 25 (168)
T ss_dssp EEEEES-TTSSHHHHH-HHHHHHHHH
T ss_pred CEEEECcCCCCHHHHH-HHHHHHhhc
Confidence 4789999999999864 455566543
No 492
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=87.48 E-value=2.3 Score=42.25 Aligned_cols=71 Identities=17% Similarity=0.197 Sum_probs=54.6
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhc----CCccEEEeCchhhHHHhhcCCCCCCC
Q 015712 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSN----APIGMLIATPSEVLQHIEDRNVSCDD 290 (402)
Q Consensus 215 ~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~----~~~~IlV~TP~~l~~~l~~~~~~l~~ 290 (402)
.|..+||.|.|..-+..+.-.++. .|+...-++|..+...+...++ ..++|+|||- +..++++..+
T Consensus 299 ~g~s~iVF~~t~~tt~~la~~L~~----lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TD------VaSRGLDip~ 368 (476)
T KOG0330|consen 299 AGNSVIVFCNTCNTTRFLALLLRN----LGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTD------VASRGLDIPH 368 (476)
T ss_pred cCCcEEEEEeccchHHHHHHHHHh----cCcceecccchhhHHHHHHHHHHHhccCCcEEEecc------hhcccCCCCC
Confidence 366789999998877766655555 4788889999998777665553 4689999995 4567888999
Q ss_pred eeEEE
Q 015712 291 IRYVV 295 (402)
Q Consensus 291 l~~lV 295 (402)
++++|
T Consensus 369 Vd~VV 373 (476)
T KOG0330|consen 369 VDVVV 373 (476)
T ss_pred ceEEE
Confidence 98887
No 493
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=87.48 E-value=2.8 Score=43.21 Aligned_cols=73 Identities=16% Similarity=0.174 Sum_probs=55.4
Q ss_pred CCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHh----cCCccEEEeCchhhHHHhhcCCCCCCCe
Q 015712 216 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDDI 291 (402)
Q Consensus 216 ~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~l~~~l~~~~~~l~~l 291 (402)
..++||.|++++-+..++..+... ++.+..++|+.+..++...+ .....|||||. +-..++++.++
T Consensus 335 ~~~~IVF~~s~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~------~l~~GIDi~~v 404 (475)
T PRK01297 335 WERVMVFANRKDEVRRIEERLVKD----GINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATD------VAGRGIHIDGI 404 (475)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEcc------ccccCCcccCC
Confidence 458999999999998888777543 67888889998877665433 34678999994 22457889999
Q ss_pred eEEEEcC
Q 015712 292 RYVVLDE 298 (402)
Q Consensus 292 ~~lVlDE 298 (402)
+++|.-.
T Consensus 405 ~~VI~~~ 411 (475)
T PRK01297 405 SHVINFT 411 (475)
T ss_pred CEEEEeC
Confidence 9998643
No 494
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=87.26 E-value=1.4 Score=43.25 Aligned_cols=24 Identities=38% Similarity=0.598 Sum_probs=20.2
Q ss_pred HHHHHHcCCcEEEEcCCCCChhhH
Q 015712 171 GIPAVLNGKSVVLSSGSGSGRTLA 194 (402)
Q Consensus 171 ~i~~il~g~dvli~a~TGsGKTla 194 (402)
++-+++.|+.+++.+++|+|||+.
T Consensus 36 ~l~a~~~~~~vll~G~PG~gKT~l 59 (329)
T COG0714 36 ALLALLAGGHVLLEGPPGVGKTLL 59 (329)
T ss_pred HHHHHHcCCCEEEECCCCccHHHH
Confidence 344567899999999999999975
No 495
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=87.26 E-value=4.5 Score=39.97 Aligned_cols=54 Identities=19% Similarity=0.300 Sum_probs=35.9
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHH----HHHcCCcEEEEcCCCCChhhHh
Q 015712 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIP----AVLNGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 139 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~----~il~g~dvli~a~TGsGKTla~ 195 (402)
...+|.+.|=-+.+.+.|++.=. .|.|.--+- .+...+.+++.+|.|+|||++.
T Consensus 87 I~v~f~DIggLe~v~~~L~e~Vi---lPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlA 144 (386)
T KOG0737|consen 87 IGVSFDDIGGLEEVKDALQELVI---LPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLA 144 (386)
T ss_pred ceeehhhccchHHHHHHHHHHHh---hcccchhhhcccccccCCccceecCCCCchHHHHH
Confidence 34589999988888888877522 222222211 1223468999999999999854
No 496
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=87.19 E-value=1.4 Score=47.22 Aligned_cols=54 Identities=19% Similarity=0.086 Sum_probs=37.4
Q ss_pred CCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchH--HHHHHHHHHHHhhc
Q 015712 178 GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEE--SADQGFHMAKFISH 241 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~Ptre--La~Qi~~~~~~l~~ 241 (402)
..++++.|+||+|||..+.+-+.+.+. .+..++|+=|-.. |...+...++..+.
T Consensus 176 ~~H~lv~G~TGsGKT~l~~~l~~q~i~----------~g~~viv~DpKgD~~l~~~~~~~~~~~G~ 231 (634)
T TIGR03743 176 VGHTLVLGTTGVGKTRLAELLITQDIR----------RGDVVIVIDPKGDADLKRRMRAEAKRAGR 231 (634)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHH----------cCCeEEEEeCCCchHHHHHHHHHHHHhCC
Confidence 467999999999999877444444443 3556777777755 66666666666543
No 497
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=87.19 E-value=1.1 Score=43.81 Aligned_cols=47 Identities=17% Similarity=0.127 Sum_probs=28.1
Q ss_pred CCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHH
Q 015712 178 GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQ 231 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Q 231 (402)
|.-.++.||||||||.-..=..+....+. .+...+=+=.|..-||.-
T Consensus 273 GElTvlTGpTGsGKTTFlsEYsLDL~~QG-------VnTLwgSFEi~n~rla~~ 319 (514)
T KOG2373|consen 273 GELTVLTGPTGSGKTTFLSEYSLDLFTQG-------VNTLWGSFEIPNKRLAHW 319 (514)
T ss_pred CceEEEecCCCCCceeEehHhhHHHHhhh-------hhheeeeeecchHHHHHH
Confidence 34589999999999986544555444331 112233344566666654
No 498
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=87.15 E-value=1 Score=48.77 Aligned_cols=32 Identities=19% Similarity=0.183 Sum_probs=24.1
Q ss_pred CCCeeEEEEcCCCccccCCCHHHHHHHHHHhh
Q 015712 288 CDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (402)
Q Consensus 288 l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~ 319 (402)
+.+-+++|+||+-.-+|......+...+..+.
T Consensus 617 l~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~ 648 (694)
T TIGR03375 617 LRDPPILLLDEPTSAMDNRSEERFKDRLKRWL 648 (694)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh
Confidence 46778999999988887776667766666553
No 499
>PRK13767 ATP-dependent helicase; Provisional
Probab=87.13 E-value=3.2 Score=46.34 Aligned_cols=77 Identities=13% Similarity=0.179 Sum_probs=56.6
Q ss_pred CCeEEEEcCchHHHHHHHHHHHHhhc--cCCcceeeccCCCChHHHHHHh----cCCccEEEeCchhhHHHhhcCCCCCC
Q 015712 216 HPRAIVLCTTEESADQGFHMAKFISH--CARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCD 289 (402)
Q Consensus 216 ~~~~Lvl~PtreLa~Qi~~~~~~l~~--~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~l~~~l~~~~~~l~ 289 (402)
+..+||.|+|+..|..++..+..... +.+..+.+++|+.+...+.... +....|||||.- + ..++++.
T Consensus 284 ~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~-----L-e~GIDip 357 (876)
T PRK13767 284 HRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTS-----L-ELGIDIG 357 (876)
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECCh-----H-HhcCCCC
Confidence 55799999999999998888876432 1346788899998877665432 345789999963 1 2478888
Q ss_pred CeeEEEEcC
Q 015712 290 DIRYVVLDE 298 (402)
Q Consensus 290 ~l~~lVlDE 298 (402)
++++||.-.
T Consensus 358 ~Vd~VI~~~ 366 (876)
T PRK13767 358 YIDLVVLLG 366 (876)
T ss_pred CCcEEEEeC
Confidence 999988643
No 500
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=87.08 E-value=0.89 Score=42.54 Aligned_cols=35 Identities=26% Similarity=0.417 Sum_probs=24.0
Q ss_pred cEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcC
Q 015712 180 SVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCT 224 (402)
Q Consensus 180 dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~P 224 (402)
.+++.|++|||||. +++-++..+.. ....+++++|
T Consensus 15 r~viIG~sGSGKT~-li~~lL~~~~~---------~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTT-LIKSLLYYLRH---------KFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHH-HHHHHHHhhcc---------cCCEEEEEec
Confidence 68999999999996 55666654433 2345566666
Done!