Query 015712
Match_columns 402
No_of_seqs 337 out of 2369
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 17:22:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015712.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015712hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fe2_A Probable ATP-dependent 100.0 1.8E-41 6.3E-46 316.2 21.4 219 134-362 22-240 (242)
2 2db3_A ATP-dependent RNA helic 100.0 9.6E-40 3.3E-44 330.1 25.3 249 135-394 50-298 (434)
3 3ber_A Probable ATP-dependent 100.0 1.5E-39 5.3E-44 305.0 21.8 209 137-360 39-248 (249)
4 3iuy_A Probable ATP-dependent 100.0 7.1E-40 2.4E-44 302.3 19.1 216 133-358 11-227 (228)
5 1wrb_A DJVLGB; RNA helicase, D 100.0 5.7E-40 2E-44 307.8 17.6 230 139-372 21-252 (253)
6 3fmo_B ATP-dependent RNA helic 100.0 5.4E-40 1.8E-44 316.5 17.9 205 137-359 88-297 (300)
7 1vec_A ATP-dependent RNA helic 100.0 9E-39 3.1E-43 289.8 23.1 202 141-357 3-205 (206)
8 3bor_A Human initiation factor 100.0 2.5E-39 8.7E-44 300.9 18.9 211 135-360 24-235 (237)
9 2oxc_A Probable ATP-dependent 100.0 6.1E-39 2.1E-43 296.9 21.0 210 134-359 17-228 (230)
10 1q0u_A Bstdead; DEAD protein, 100.0 2.4E-39 8.3E-44 297.1 17.5 205 140-359 3-211 (219)
11 2pl3_A Probable ATP-dependent 100.0 2E-38 6.7E-43 294.2 22.7 215 134-360 18-233 (236)
12 1qde_A EIF4A, translation init 100.0 1.3E-38 4.5E-43 292.7 20.9 209 136-360 9-217 (224)
13 2gxq_A Heat resistant RNA depe 100.0 6.4E-38 2.2E-42 284.2 20.5 204 142-359 2-205 (207)
14 3ly5_A ATP-dependent RNA helic 100.0 7.7E-38 2.6E-42 295.6 19.8 205 140-355 51-258 (262)
15 3dkp_A Probable ATP-dependent 100.0 4.2E-38 1.4E-42 293.6 16.3 214 135-361 19-242 (245)
16 1t6n_A Probable ATP-dependent 100.0 2.8E-37 9.4E-42 283.3 19.3 204 140-358 13-219 (220)
17 2i4i_A ATP-dependent RNA helic 100.0 7.5E-36 2.6E-40 298.1 24.4 253 136-395 10-273 (417)
18 2j0s_A ATP-dependent RNA helic 100.0 8.3E-36 2.8E-40 297.6 21.0 239 138-393 34-272 (410)
19 3eiq_A Eukaryotic initiation f 100.0 2.4E-34 8.2E-39 286.7 23.3 243 135-394 34-277 (414)
20 3fmp_B ATP-dependent RNA helic 100.0 3.4E-34 1.2E-38 292.5 16.4 221 138-376 89-314 (479)
21 1xti_A Probable ATP-dependent 100.0 3.8E-33 1.3E-37 275.9 22.6 206 141-361 8-216 (391)
22 1fuu_A Yeast initiation factor 100.0 1.4E-33 4.9E-38 279.1 18.9 207 138-360 18-224 (394)
23 1s2m_A Putative ATP-dependent 100.0 7.1E-33 2.4E-37 275.3 23.1 204 139-357 19-222 (400)
24 3fht_A ATP-dependent RNA helic 100.0 6E-33 2E-37 276.2 22.3 240 134-393 18-262 (412)
25 3pey_A ATP-dependent RNA helic 100.0 2.2E-32 7.5E-37 270.1 22.1 203 139-360 3-208 (395)
26 3sqw_A ATP-dependent RNA helic 100.0 1.3E-32 4.4E-37 287.6 20.5 206 148-357 28-241 (579)
27 3i5x_A ATP-dependent RNA helic 100.0 6.8E-32 2.3E-36 280.7 21.2 206 148-357 79-292 (563)
28 1hv8_A Putative ATP-dependent 100.0 2.4E-31 8.1E-36 260.1 23.1 201 140-357 5-206 (367)
29 2z0m_A 337AA long hypothetical 100.0 1.4E-30 4.9E-35 251.9 20.7 188 148-357 1-188 (337)
30 3fho_A ATP-dependent RNA helic 100.0 3.2E-29 1.1E-33 258.0 17.8 234 139-393 117-353 (508)
31 3l9o_A ATP-dependent RNA helic 100.0 4.9E-30 1.7E-34 284.4 8.0 189 140-357 161-351 (1108)
32 3oiy_A Reverse gyrase helicase 100.0 5.6E-29 1.9E-33 249.1 14.2 180 151-344 9-209 (414)
33 2v1x_A ATP-dependent DNA helic 100.0 6.9E-28 2.4E-32 251.9 21.8 190 140-355 20-226 (591)
34 2zj8_A DNA helicase, putative 100.0 7.3E-28 2.5E-32 257.8 17.6 189 142-353 2-191 (720)
35 2va8_A SSO2462, SKI2-type heli 100.0 1.4E-27 4.8E-32 255.3 19.2 190 140-353 7-197 (715)
36 2p6r_A Afuhel308 helicase; pro 99.9 6.7E-28 2.3E-32 257.3 14.7 192 142-354 2-195 (702)
37 4ddu_A Reverse gyrase; topoiso 99.9 2.7E-27 9.3E-32 262.4 16.7 204 153-373 68-292 (1104)
38 1oyw_A RECQ helicase, ATP-depe 99.9 4.2E-27 1.4E-31 243.0 15.2 189 140-351 1-196 (523)
39 4a2p_A RIG-I, retinoic acid in 99.9 1.5E-26 5.2E-31 238.9 16.6 175 159-341 3-178 (556)
40 1tf5_A Preprotein translocase 99.9 1.1E-26 3.9E-31 245.7 15.2 169 158-341 79-288 (844)
41 2ykg_A Probable ATP-dependent 99.9 4.4E-26 1.5E-30 242.6 19.5 180 153-340 3-184 (696)
42 1gku_B Reverse gyrase, TOP-RG; 99.9 1E-26 3.5E-31 257.5 14.8 194 157-370 52-255 (1054)
43 3tbk_A RIG-I helicase domain; 99.9 6.4E-26 2.2E-30 233.8 17.9 171 163-341 4-176 (555)
44 3b6e_A Interferon-induced heli 99.9 9.1E-26 3.1E-30 204.9 13.3 175 159-338 29-216 (216)
45 4a2q_A RIG-I, retinoic acid in 99.9 2.6E-25 9E-30 240.5 19.0 176 158-341 243-419 (797)
46 3llm_A ATP-dependent RNA helic 99.9 6.1E-26 2.1E-30 210.4 10.0 183 148-354 46-231 (235)
47 2fsf_A Preprotein translocase 99.9 2.8E-25 9.5E-30 234.6 14.4 147 159-320 71-240 (853)
48 2xgj_A ATP-dependent RNA helic 99.9 1.4E-24 4.9E-29 238.7 17.8 157 156-342 80-236 (1010)
49 1nkt_A Preprotein translocase 99.9 8.6E-25 2.9E-29 231.2 15.0 170 158-342 107-317 (922)
50 4a2w_A RIG-I, retinoic acid in 99.9 2.4E-24 8.1E-29 236.3 15.8 178 155-340 240-418 (936)
51 4a4z_A Antiviral helicase SKI2 99.9 3.1E-24 1E-28 236.0 16.1 158 158-343 35-192 (997)
52 4f92_B U5 small nuclear ribonu 99.9 5.1E-24 1.7E-28 244.2 18.0 186 160-352 76-265 (1724)
53 4f92_B U5 small nuclear ribonu 99.9 1.9E-23 6.4E-28 239.5 21.1 190 148-352 911-1104(1724)
54 4gl2_A Interferon-induced heli 99.9 2.2E-23 7.6E-28 221.9 11.8 174 163-341 7-193 (699)
55 1wp9_A ATP-dependent RNA helic 99.9 3.3E-22 1.1E-26 201.2 19.1 164 163-345 9-172 (494)
56 1gm5_A RECG; helicase, replica 99.9 1.8E-22 6E-27 216.2 16.8 167 150-345 356-532 (780)
57 1rif_A DAR protein, DNA helica 99.9 7.2E-23 2.5E-27 194.7 12.2 157 163-346 113-269 (282)
58 2eyq_A TRCF, transcription-rep 99.9 1.8E-20 6E-25 209.0 26.2 184 146-358 586-780 (1151)
59 2oca_A DAR protein, ATP-depend 99.9 8.5E-22 2.9E-26 202.2 13.0 158 161-345 111-268 (510)
60 2jlq_A Serine protease subunit 99.9 2.8E-22 9.5E-27 203.3 8.9 157 160-346 1-158 (451)
61 2ipc_A Preprotein translocase 99.9 2E-21 6.8E-26 205.1 13.1 130 159-303 76-215 (997)
62 2whx_A Serine protease/ntpase/ 99.8 2.2E-22 7.6E-27 211.1 4.9 174 143-346 151-325 (618)
63 2fwr_A DNA repair protein RAD2 99.8 3.7E-20 1.3E-24 188.2 13.9 137 163-341 93-230 (472)
64 3o8b_A HCV NS3 protease/helica 99.8 4.3E-21 1.5E-25 200.9 6.2 148 163-343 217-364 (666)
65 2fz4_A DNA repair protein RAD2 99.8 2.1E-19 7.3E-24 166.7 15.8 139 162-342 92-231 (237)
66 2wv9_A Flavivirin protease NS2 99.8 4.8E-22 1.6E-26 210.1 -3.0 155 155-346 202-380 (673)
67 2xau_A PRE-mRNA-splicing facto 99.8 2.3E-19 7.8E-24 192.7 14.6 191 138-354 69-262 (773)
68 1yks_A Genome polyprotein [con 99.8 2.2E-20 7.6E-25 188.7 3.9 137 174-347 4-148 (440)
69 3h1t_A Type I site-specific re 99.8 5.7E-19 2E-23 184.6 12.5 169 163-354 178-356 (590)
70 2v6i_A RNA helicase; membrane, 99.8 2.1E-18 7.3E-23 173.7 12.6 141 177-346 1-141 (431)
71 2z83_A Helicase/nucleoside tri 99.8 1.6E-18 5.4E-23 176.0 10.7 145 173-346 16-160 (459)
72 2w00_A HSDR, R.ECOR124I; ATP-b 99.7 9.6E-18 3.3E-22 184.1 13.8 168 149-342 250-441 (1038)
73 3crv_A XPD/RAD3 related DNA he 99.7 3.8E-17 1.3E-21 169.6 13.2 131 160-304 1-187 (551)
74 3rc3_A ATP-dependent RNA helic 99.7 3.7E-17 1.3E-21 172.5 7.9 160 149-348 130-289 (677)
75 2vl7_A XPD; helicase, unknown 99.6 8.4E-16 2.9E-20 159.0 7.4 127 159-303 4-188 (540)
76 1z63_A Helicase of the SNF2/RA 99.6 8.9E-15 3E-19 149.5 12.5 150 162-341 36-189 (500)
77 3dmq_A RNA polymerase-associat 99.4 9.8E-14 3.3E-18 152.6 9.0 160 162-340 152-317 (968)
78 1z3i_X Similar to RAD54-like; 99.4 2.9E-12 1E-16 135.1 16.9 160 163-340 55-231 (644)
79 3mwy_W Chromo domain-containin 99.4 1.3E-12 4.4E-17 141.2 13.4 154 163-339 236-405 (800)
80 4a15_A XPD helicase, ATP-depen 99.4 7.3E-13 2.5E-17 138.9 11.0 81 163-252 3-87 (620)
81 3jux_A Protein translocase sub 99.3 1.2E-11 4E-16 129.0 13.3 130 159-303 72-258 (822)
82 1w36_D RECD, exodeoxyribonucle 99.1 2E-10 7E-15 120.2 11.2 157 152-337 137-297 (608)
83 3upu_A ATP-dependent DNA helic 98.2 9.2E-06 3.1E-10 81.9 12.1 71 157-236 19-94 (459)
84 3e1s_A Exodeoxyribonuclease V, 98.2 1.1E-05 3.8E-10 83.6 12.9 62 163-234 189-250 (574)
85 2gk6_A Regulator of nonsense t 98.1 2.5E-05 8.4E-10 81.9 13.0 70 161-239 178-247 (624)
86 4b3f_X DNA-binding protein smu 98.1 1.2E-05 4E-10 84.7 10.3 67 163-239 189-256 (646)
87 2xzl_A ATP-dependent helicase 98.0 4.7E-05 1.6E-09 81.9 13.0 70 161-239 358-427 (802)
88 2wjy_A Regulator of nonsense t 97.9 6.8E-05 2.3E-09 80.6 12.6 70 161-239 354-423 (800)
89 2o0j_A Terminase, DNA packagin 97.6 0.00041 1.4E-08 68.1 11.7 72 163-242 163-234 (385)
90 3cpe_A Terminase, DNA packagin 97.4 0.0017 5.9E-08 67.4 14.0 73 163-243 163-235 (592)
91 3ec2_A DNA replication protein 97.2 0.0014 4.9E-08 56.6 9.6 19 177-195 37-55 (180)
92 1c4o_A DNA nucleotide excision 97.2 0.00099 3.4E-08 70.2 9.5 68 159-240 5-77 (664)
93 2kjq_A DNAA-related protein; s 97.2 0.0011 3.9E-08 56.0 8.1 18 177-194 35-52 (149)
94 2orw_A Thymidine kinase; TMTK, 96.8 0.013 4.4E-07 51.2 11.5 40 177-226 2-41 (184)
95 3lfu_A DNA helicase II; SF1 he 96.4 0.0053 1.8E-07 64.0 8.1 71 162-240 8-78 (647)
96 2b8t_A Thymidine kinase; deoxy 96.4 0.01 3.5E-07 53.6 8.6 91 177-302 11-101 (223)
97 3vkw_A Replicase large subunit 96.4 0.0088 3E-07 59.5 8.6 87 180-306 163-249 (446)
98 3te6_A Regulatory protein SIR3 96.2 0.019 6.4E-07 54.8 9.7 28 177-205 44-71 (318)
99 1xx6_A Thymidine kinase; NESG, 96.2 0.019 6.5E-07 50.5 9.0 39 178-226 8-46 (191)
100 3bos_A Putative DNA replicatio 96.2 0.0071 2.4E-07 54.0 6.3 19 177-195 51-69 (242)
101 1l8q_A Chromosomal replication 96.1 0.018 6.3E-07 54.5 9.3 26 178-204 37-62 (324)
102 2zpa_A Uncharacterized protein 96.0 0.013 4.4E-07 61.2 8.0 113 163-340 175-289 (671)
103 3e2i_A Thymidine kinase; Zn-bi 96.0 0.026 9E-07 50.6 8.8 41 177-227 27-67 (219)
104 3kl4_A SRP54, signal recogniti 95.9 0.1 3.4E-06 51.9 13.7 133 179-352 98-236 (433)
105 1uaa_A REP helicase, protein ( 95.9 0.0097 3.3E-07 62.6 6.7 70 163-240 2-71 (673)
106 2v1u_A Cell division control p 95.8 0.03 1E-06 53.8 9.3 19 177-195 43-61 (387)
107 2j9r_A Thymidine kinase; TK1, 95.8 0.031 1.1E-06 50.1 8.5 40 178-227 28-67 (214)
108 2chg_A Replication factor C sm 95.8 0.13 4.3E-06 44.7 12.5 16 179-194 39-54 (226)
109 2z4s_A Chromosomal replication 95.7 0.034 1.2E-06 55.4 9.4 25 178-203 130-154 (440)
110 1w4r_A Thymidine kinase; type 95.6 0.053 1.8E-06 47.8 9.3 39 177-225 19-57 (195)
111 1pjr_A PCRA; DNA repair, DNA r 95.6 0.022 7.4E-07 60.5 8.1 70 162-239 10-79 (724)
112 3syl_A Protein CBBX; photosynt 95.6 0.02 6.8E-07 53.6 6.9 18 178-195 67-84 (309)
113 2d7d_A Uvrabc system protein B 95.6 0.024 8.3E-07 59.5 8.1 65 163-240 12-81 (661)
114 2r6a_A DNAB helicase, replicat 95.5 0.12 4E-06 51.6 12.7 144 177-337 202-362 (454)
115 2orv_A Thymidine kinase; TP4A 95.4 0.043 1.5E-06 49.7 7.9 40 177-226 18-57 (234)
116 1d2n_A N-ethylmaleimide-sensit 95.4 0.054 1.9E-06 49.8 8.9 17 179-195 65-81 (272)
117 1fnn_A CDC6P, cell division co 95.4 0.037 1.3E-06 53.3 8.1 16 180-195 46-61 (389)
118 3h4m_A Proteasome-activating n 95.3 0.047 1.6E-06 50.4 8.3 54 140-195 13-68 (285)
119 3u61_B DNA polymerase accessor 95.2 0.046 1.6E-06 51.6 8.1 15 289-303 104-118 (324)
120 1a5t_A Delta prime, HOLB; zinc 95.1 0.2 6.8E-06 47.7 12.3 40 164-204 3-49 (334)
121 2hjv_A ATP-dependent RNA helic 95.1 0.15 5E-06 43.1 10.2 74 216-299 35-112 (163)
122 2qby_B CDC6 homolog 3, cell di 95.1 0.038 1.3E-06 53.2 7.1 25 178-203 45-69 (384)
123 1njg_A DNA polymerase III subu 95.0 0.44 1.5E-05 41.6 13.7 16 180-195 47-62 (250)
124 2q6t_A DNAB replication FORK h 95.0 0.12 4.1E-06 51.4 10.8 144 177-337 199-361 (444)
125 4a1f_A DNAB helicase, replicat 95.0 0.057 2E-06 51.8 8.2 145 177-338 45-205 (338)
126 2w58_A DNAI, primosome compone 95.0 0.13 4.5E-06 44.7 9.8 25 179-204 55-79 (202)
127 2rb4_A ATP-dependent RNA helic 95.0 0.13 4.6E-06 43.8 9.7 74 215-298 33-110 (175)
128 1sxj_E Activator 1 40 kDa subu 94.9 0.15 5.2E-06 48.4 10.9 43 141-195 11-53 (354)
129 3vfd_A Spastin; ATPase, microt 94.9 0.37 1.2E-05 46.8 13.7 52 140-195 111-165 (389)
130 3u4q_A ATP-dependent helicase/ 94.8 0.038 1.3E-06 62.2 7.1 70 163-238 10-79 (1232)
131 1jbk_A CLPB protein; beta barr 94.7 0.068 2.3E-06 45.3 7.0 25 178-203 43-67 (195)
132 3pfi_A Holliday junction ATP-d 94.6 0.37 1.3E-05 45.4 12.8 42 142-195 27-72 (338)
133 2qz4_A Paraplegin; AAA+, SPG7, 94.6 0.17 5.7E-06 45.8 10.0 52 141-195 3-56 (262)
134 2p6n_A ATP-dependent RNA helic 94.6 0.21 7.2E-06 43.5 10.2 73 216-298 54-130 (191)
135 1fuk_A Eukaryotic initiation f 94.6 0.21 7.1E-06 42.2 9.8 74 216-299 30-107 (165)
136 2qgz_A Helicase loader, putati 94.6 0.13 4.6E-06 48.5 9.3 26 178-204 152-177 (308)
137 1sxj_A Activator 1 95 kDa subu 94.5 0.13 4.4E-06 52.2 9.7 44 289-340 147-190 (516)
138 2p65_A Hypothetical protein PF 94.5 0.23 8E-06 41.8 10.1 18 178-195 43-60 (187)
139 3eaq_A Heat resistant RNA depe 94.5 0.2 6.9E-06 44.3 9.9 71 216-296 31-105 (212)
140 1cr0_A DNA primase/helicase; R 94.5 0.096 3.3E-06 48.8 8.1 20 176-195 33-52 (296)
141 2qby_A CDC6 homolog 1, cell di 94.4 0.072 2.5E-06 50.9 7.2 18 178-195 45-62 (386)
142 2dr3_A UPF0273 protein PH0284; 94.4 0.096 3.3E-06 46.8 7.6 50 177-237 22-71 (247)
143 3dm5_A SRP54, signal recogniti 94.1 0.96 3.3E-05 44.9 14.7 59 179-250 101-161 (443)
144 2w0m_A SSO2452; RECA, SSPF, un 94.0 0.31 1.1E-05 42.8 10.3 19 177-195 22-40 (235)
145 2l8b_A Protein TRAI, DNA helic 94.0 0.34 1.2E-05 42.1 9.6 121 165-338 36-158 (189)
146 1iqp_A RFCS; clamp loader, ext 93.8 0.49 1.7E-05 44.0 11.6 16 180-195 48-63 (327)
147 1t5i_A C_terminal domain of A 93.8 0.96 3.3E-05 38.3 12.5 73 216-298 31-107 (172)
148 1sxj_D Activator 1 41 kDa subu 93.8 0.42 1.4E-05 45.1 11.2 17 179-195 59-75 (353)
149 2d7d_A Uvrabc system protein B 93.6 1.3 4.3E-05 46.4 15.3 78 215-302 444-525 (661)
150 1xwi_A SKD1 protein; VPS4B, AA 93.6 0.12 4.3E-06 48.9 7.0 50 140-195 8-62 (322)
151 3pvs_A Replication-associated 93.4 0.11 3.8E-06 51.8 6.6 17 179-195 51-67 (447)
152 3eie_A Vacuolar protein sortin 93.4 0.21 7.3E-06 47.1 8.3 50 140-195 14-68 (322)
153 2z43_A DNA repair and recombin 93.4 0.24 8.2E-06 46.9 8.7 58 177-238 106-164 (324)
154 1xp8_A RECA protein, recombina 93.4 0.39 1.3E-05 46.5 10.2 39 177-225 73-111 (366)
155 3i5x_A ATP-dependent RNA helic 93.2 0.8 2.7E-05 46.4 12.9 78 215-299 338-419 (563)
156 1hqc_A RUVB; extended AAA-ATPa 93.2 0.37 1.3E-05 45.0 9.6 18 178-195 38-55 (324)
157 3bh0_A DNAB-like replicative h 93.1 0.48 1.6E-05 44.7 10.2 143 177-337 67-229 (315)
158 1n0w_A DNA repair protein RAD5 92.7 1.7 5.7E-05 38.4 12.9 21 177-197 23-43 (243)
159 2zan_A Vacuolar protein sortin 92.6 0.31 1.1E-05 48.4 8.6 53 139-195 129-184 (444)
160 3sqw_A ATP-dependent RNA helic 92.3 1.2 4.3E-05 45.4 12.9 79 215-300 287-369 (579)
161 3bgw_A DNAB-like replicative h 92.1 0.4 1.4E-05 47.7 8.6 143 177-337 196-358 (444)
162 2i1q_A DNA repair and recombin 92.1 0.54 1.8E-05 44.3 9.1 19 178-196 98-116 (322)
163 2cvh_A DNA repair and recombin 92.1 2.3 7.8E-05 36.8 12.8 20 177-196 19-38 (220)
164 3i32_A Heat resistant RNA depe 92.1 0.54 1.8E-05 44.2 9.0 71 216-296 28-102 (300)
165 2jgn_A DBX, DDX3, ATP-dependen 92.0 0.39 1.3E-05 41.5 7.3 73 215-297 45-121 (185)
166 1g5t_A COB(I)alamin adenosyltr 91.9 0.68 2.3E-05 40.7 8.8 34 179-222 29-62 (196)
167 3fht_A ATP-dependent RNA helic 91.8 1.3 4.5E-05 42.4 11.7 73 216-298 266-342 (412)
168 2eyq_A TRCF, transcription-rep 91.8 1.6 5.4E-05 48.7 13.7 80 215-302 811-894 (1151)
169 2i4i_A ATP-dependent RNA helic 91.7 0.63 2.1E-05 44.9 9.4 72 215-296 275-350 (417)
170 3lda_A DNA repair protein RAD5 91.7 1.4 4.7E-05 43.2 11.7 27 137-163 80-106 (400)
171 1c4o_A DNA nucleotide excision 91.6 4.3 0.00015 42.3 16.1 93 215-320 438-534 (664)
172 3pey_A ATP-dependent RNA helic 91.5 5.3 0.00018 37.6 15.7 77 215-301 242-322 (395)
173 2db3_A ATP-dependent RNA helic 91.5 0.77 2.6E-05 45.1 9.9 69 218-296 302-374 (434)
174 1nlf_A Regulatory protein REPA 91.2 2 6.9E-05 39.3 11.8 23 175-197 27-49 (279)
175 4b4t_J 26S protease regulatory 91.0 1.3 4.4E-05 43.4 10.7 53 139-194 143-198 (405)
176 1jr3_A DNA polymerase III subu 91.0 2.2 7.6E-05 40.3 12.4 16 180-195 40-55 (373)
177 2ehv_A Hypothetical protein PH 90.6 0.22 7.5E-06 44.5 4.5 46 289-342 134-184 (251)
178 2j0s_A ATP-dependent RNA helic 90.5 1.6 5.6E-05 41.9 11.0 72 216-297 276-351 (410)
179 1s2m_A Putative ATP-dependent 90.5 1.4 4.9E-05 42.1 10.6 74 215-298 257-334 (400)
180 1sxj_B Activator 1 37 kDa subu 90.5 0.62 2.1E-05 43.2 7.7 16 180-195 44-59 (323)
181 1w5s_A Origin recognition comp 90.4 0.97 3.3E-05 43.5 9.3 17 179-195 51-69 (412)
182 3hjh_A Transcription-repair-co 90.4 0.92 3.1E-05 45.6 9.2 52 177-241 13-64 (483)
183 1xti_A Probable ATP-dependent 90.3 0.92 3.2E-05 43.2 9.0 76 215-300 249-328 (391)
184 1sxj_C Activator 1 40 kDa subu 90.2 1.4 4.7E-05 41.7 10.0 16 180-195 48-63 (340)
185 1vma_A Cell division protein F 90.1 9.4 0.00032 35.6 15.6 18 178-195 104-121 (306)
186 2zr9_A Protein RECA, recombina 90.0 0.6 2.1E-05 44.8 7.3 39 177-225 60-98 (349)
187 2zts_A Putative uncharacterize 89.9 0.27 9.4E-06 43.8 4.5 51 177-237 29-79 (251)
188 4b4t_H 26S protease regulatory 89.8 0.15 5.3E-06 50.8 2.9 53 139-194 204-259 (467)
189 2chq_A Replication factor C sm 89.7 1.6 5.6E-05 40.2 9.9 42 141-195 14-55 (319)
190 1oyw_A RECQ helicase, ATP-depe 89.7 1.2 4.2E-05 45.0 9.6 73 215-297 235-311 (523)
191 2v1x_A ATP-dependent DNA helic 89.5 1 3.5E-05 46.4 9.0 73 215-297 266-342 (591)
192 4a74_A DNA repair and recombin 89.5 3.9 0.00013 35.5 11.9 19 177-195 24-42 (231)
193 1yks_A Genome polyprotein [con 89.5 0.73 2.5E-05 45.6 7.6 70 216-296 177-246 (440)
194 3m6a_A ATP-dependent protease 89.0 0.53 1.8E-05 48.0 6.3 19 177-195 107-125 (543)
195 3e70_C DPA, signal recognition 89.0 4 0.00014 38.6 12.1 53 292-352 213-266 (328)
196 2fna_A Conserved hypothetical 88.9 11 0.00038 34.8 15.2 17 179-195 31-47 (357)
197 1hv8_A Putative ATP-dependent 88.7 1.2 4.2E-05 41.7 8.3 74 215-298 237-314 (367)
198 2gno_A DNA polymerase III, gam 88.6 4.8 0.00016 37.6 12.2 27 289-319 81-107 (305)
199 1q57_A DNA primase/helicase; d 88.5 1.7 5.6E-05 43.7 9.5 49 177-235 241-289 (503)
200 1pzn_A RAD51, DNA repair and r 88.3 2.9 9.8E-05 39.9 10.6 21 177-197 130-150 (349)
201 1v5w_A DMC1, meiotic recombina 88.3 1.5 5.3E-05 41.7 8.7 58 177-238 121-179 (343)
202 1e9r_A Conjugal transfer prote 87.7 0.54 1.8E-05 46.3 5.3 27 177-204 52-78 (437)
203 2yhs_A FTSY, cell division pro 87.7 5.5 0.00019 40.0 12.5 16 180-195 295-310 (503)
204 3hr8_A Protein RECA; alpha and 87.6 0.53 1.8E-05 45.4 5.0 40 177-226 60-99 (356)
205 3pxi_A Negative regulator of g 87.2 1.9 6.4E-05 45.7 9.4 16 180-195 523-538 (758)
206 2yjt_D ATP-dependent RNA helic 87.1 0.12 4E-06 44.0 0.0 73 216-298 30-106 (170)
207 3co5_A Putative two-component 87.0 0.47 1.6E-05 39.0 3.7 20 175-194 24-43 (143)
208 2vhj_A Ntpase P4, P4; non- hyd 86.0 0.42 1.4E-05 45.5 3.2 19 177-195 122-140 (331)
209 3n70_A Transport activator; si 85.9 0.54 1.8E-05 38.7 3.5 20 176-195 22-41 (145)
210 3cmu_A Protein RECA, recombina 85.9 0.57 1.9E-05 54.8 4.8 47 172-228 1415-1467(2050)
211 2v6i_A RNA helicase; membrane, 85.8 1.7 5.6E-05 42.8 7.6 68 216-294 171-238 (431)
212 1wp9_A ATP-dependent RNA helic 85.7 2.8 9.7E-05 40.5 9.3 76 215-300 360-447 (494)
213 2xau_A PRE-mRNA-splicing facto 84.7 2.3 7.8E-05 45.3 8.5 75 216-296 303-393 (773)
214 3tbk_A RIG-I helicase domain; 84.5 3 0.0001 41.5 9.0 79 215-299 388-479 (555)
215 2wv9_A Flavivirin protease NS2 84.2 1.7 5.9E-05 45.4 7.2 70 215-295 409-478 (673)
216 2oca_A DAR protein, ATP-depend 83.8 5 0.00017 39.8 10.3 76 216-300 347-426 (510)
217 1qvr_A CLPB protein; coiled co 83.5 2.2 7.4E-05 45.9 7.8 18 178-195 191-208 (854)
218 3p32_A Probable GTPase RV1496/ 83.4 19 0.00064 34.1 13.8 25 329-353 257-281 (355)
219 3cmw_A Protein RECA, recombina 83.0 2.4 8.2E-05 48.9 8.1 92 178-305 1431-1524(1706)
220 2jlq_A Serine protease subunit 82.1 2.7 9.1E-05 41.5 7.3 69 216-295 188-256 (451)
221 3eiq_A Eukaryotic initiation f 81.8 1.5 5E-05 42.1 5.2 74 215-298 279-356 (414)
222 2oap_1 GSPE-2, type II secreti 81.8 1.6 5.4E-05 44.1 5.6 40 153-194 236-276 (511)
223 3io5_A Recombination and repai 81.7 3.3 0.00011 39.2 7.3 90 180-303 30-124 (333)
224 2va8_A SSO2462, SKI2-type heli 81.6 6.2 0.00021 41.2 10.3 77 215-297 251-363 (715)
225 2z0m_A 337AA long hypothetical 81.1 2.3 7.7E-05 39.4 6.1 71 215-299 219-293 (337)
226 1ls1_A Signal recognition part 80.6 17 0.0006 33.5 12.0 19 177-195 97-115 (295)
227 1zu4_A FTSY; GTPase, signal re 80.4 8.4 0.00029 36.2 9.8 18 178-195 105-122 (320)
228 4b4t_M 26S protease regulatory 80.3 0.5 1.7E-05 46.8 1.2 54 138-194 175-231 (434)
229 2xxa_A Signal recognition part 79.9 4.8 0.00016 39.7 8.2 17 179-195 101-117 (433)
230 2p6r_A Afuhel308 helicase; pro 79.8 5.4 0.00019 41.6 9.1 76 215-296 241-346 (702)
231 2whx_A Serine protease/ntpase/ 79.6 4 0.00014 42.2 7.9 69 216-295 355-423 (618)
232 2ykg_A Probable ATP-dependent 79.6 3.3 0.00011 43.0 7.3 79 215-299 397-488 (696)
233 4gl2_A Interferon-induced heli 79.2 1.3 4.3E-05 46.2 3.9 75 216-296 400-488 (699)
234 4ag6_A VIRB4 ATPase, type IV s 79.0 1.7 5.9E-05 41.9 4.6 45 290-341 262-309 (392)
235 1tue_A Replication protein E1; 78.8 2.4 8.2E-05 37.6 5.0 49 151-202 29-81 (212)
236 3rc3_A ATP-dependent RNA helic 78.4 7.3 0.00025 40.7 9.4 74 218-302 322-401 (677)
237 2px0_A Flagellar biosynthesis 78.3 4.7 0.00016 37.5 7.2 20 177-196 104-123 (296)
238 1j8m_F SRP54, signal recogniti 77.7 7.9 0.00027 36.0 8.6 19 178-196 98-116 (297)
239 1u0j_A DNA replication protein 77.7 4.5 0.00015 37.2 6.7 43 151-196 74-122 (267)
240 3cf0_A Transitional endoplasmi 77.6 0.54 1.9E-05 43.8 0.5 55 140-195 11-66 (301)
241 3o8b_A HCV NS3 protease/helica 77.1 3.2 0.00011 43.3 6.2 67 215-295 395-461 (666)
242 3hws_A ATP-dependent CLP prote 77.0 2.9 9.9E-05 39.8 5.5 19 177-195 50-68 (363)
243 3nbx_X ATPase RAVA; AAA+ ATPas 76.4 2.9 0.0001 42.1 5.5 34 161-194 24-57 (500)
244 3b85_A Phosphate starvation-in 76.0 3.4 0.00012 36.3 5.3 33 163-195 7-39 (208)
245 2zj8_A DNA helicase, putative 75.8 6.2 0.00021 41.3 8.2 77 216-299 237-346 (720)
246 3nwn_A Kinesin-like protein KI 75.6 1.8 6.2E-05 41.6 3.6 25 171-195 96-122 (359)
247 2z83_A Helicase/nucleoside tri 75.5 3.3 0.00011 40.9 5.7 69 216-295 190-258 (459)
248 3oiy_A Reverse gyrase helicase 75.2 4.6 0.00016 38.8 6.5 72 216-299 252-329 (414)
249 2ffh_A Protein (FFH); SRP54, s 75.1 41 0.0014 32.8 13.3 18 178-195 98-115 (425)
250 1p9r_A General secretion pathw 74.6 4.1 0.00014 40.0 6.0 18 177-194 166-183 (418)
251 2gza_A Type IV secretion syste 74.6 1.9 6.6E-05 41.3 3.6 21 174-194 171-191 (361)
252 4a2p_A RIG-I, retinoic acid in 74.0 5.7 0.00019 39.6 7.0 79 215-299 389-480 (556)
253 1bg2_A Kinesin; motor protein, 73.7 2.2 7.6E-05 40.4 3.6 24 172-195 70-95 (325)
254 4f4c_A Multidrug resistance pr 73.5 2.3 8E-05 48.1 4.3 32 288-319 570-601 (1321)
255 1kgd_A CASK, peripheral plasma 73.3 1.6 5.5E-05 37.1 2.4 19 177-195 4-22 (180)
256 2bjv_A PSP operon transcriptio 73.3 2.2 7.7E-05 38.5 3.5 18 177-194 28-45 (265)
257 4etp_A Kinesin-like protein KA 72.8 2.3 7.9E-05 41.6 3.6 25 171-195 132-158 (403)
258 2j37_W Signal recognition part 72.8 16 0.00054 36.7 9.9 16 180-195 103-118 (504)
259 2r44_A Uncharacterized protein 72.5 1.6 5.4E-05 41.0 2.3 25 171-195 39-63 (331)
260 3fmp_B ATP-dependent RNA helic 72.4 0.75 2.6E-05 45.6 0.0 70 216-295 333-406 (479)
261 2h58_A Kinesin-like protein KI 72.3 2.5 8.5E-05 40.2 3.6 26 170-195 71-98 (330)
262 3dc4_A Kinesin-like protein NO 72.3 2.3 7.9E-05 40.6 3.4 24 172-195 87-112 (344)
263 1ofh_A ATP-dependent HSL prote 72.2 6.3 0.00022 35.9 6.4 19 177-195 49-67 (310)
264 3dmq_A RNA polymerase-associat 72.1 19 0.00064 39.2 11.0 77 215-300 502-584 (968)
265 1v8k_A Kinesin-like protein KI 72.1 2.6 9E-05 41.2 3.8 24 172-195 147-172 (410)
266 3gbj_A KIF13B protein; kinesin 72.1 2.5 8.5E-05 40.6 3.6 25 171-195 84-110 (354)
267 1t5c_A CENP-E protein, centrom 72.1 2.5 8.6E-05 40.5 3.6 24 172-195 70-95 (349)
268 3b6u_A Kinesin-like protein KI 71.9 2.5 8.6E-05 40.8 3.6 24 172-195 94-119 (372)
269 2zfi_A Kinesin-like protein KI 71.9 2.6 8.7E-05 40.7 3.6 24 172-195 82-107 (366)
270 3cob_A Kinesin heavy chain-lik 71.8 2.2 7.5E-05 41.2 3.1 25 171-195 71-97 (369)
271 2nr8_A Kinesin-like protein KI 71.8 2.6 8.8E-05 40.5 3.6 25 171-195 95-121 (358)
272 1x88_A Kinesin-like protein KI 71.7 2.5 8.4E-05 40.7 3.4 24 172-195 81-106 (359)
273 2vvg_A Kinesin-2; motor protei 71.7 2.6 9E-05 40.4 3.6 24 172-195 82-107 (350)
274 4akg_A Glutathione S-transfera 71.5 6.6 0.00022 47.5 7.6 46 150-196 892-941 (2695)
275 1goj_A Kinesin, kinesin heavy 71.4 2.5 8.5E-05 40.6 3.4 24 172-195 73-98 (355)
276 2y65_A Kinesin, kinesin heavy 71.4 2.8 9.6E-05 40.4 3.8 24 172-195 77-102 (365)
277 4a14_A Kinesin, kinesin-like p 71.2 2.9 9.7E-05 40.0 3.8 24 172-195 76-101 (344)
278 2pt7_A CAG-ALFA; ATPase, prote 71.0 2.2 7.5E-05 40.5 2.9 20 175-194 168-187 (330)
279 4a2q_A RIG-I, retinoic acid in 70.9 7.6 0.00026 41.2 7.4 79 215-299 630-721 (797)
280 3vaa_A Shikimate kinase, SK; s 70.9 1.9 6.7E-05 37.1 2.3 20 176-195 23-42 (199)
281 3lre_A Kinesin-like protein KI 70.8 2.6 8.8E-05 40.5 3.4 24 172-195 98-123 (355)
282 1lvg_A Guanylate kinase, GMP k 70.7 1.9 6.5E-05 37.3 2.2 19 177-195 3-21 (198)
283 3u06_A Protein claret segregat 70.4 2.7 9.2E-05 41.2 3.5 26 170-195 129-156 (412)
284 2eyu_A Twitching motility prot 70.1 2.2 7.4E-05 39.0 2.6 21 175-195 22-42 (261)
285 2wbe_C Bipolar kinesin KRP-130 70.0 2.6 9E-05 40.7 3.2 24 172-195 93-118 (373)
286 3t0q_A AGR253WP; kinesin, alph 69.6 2.4 8.4E-05 40.6 2.9 25 171-195 77-103 (349)
287 2owm_A Nckin3-434, related to 69.3 3.1 0.0001 41.2 3.6 24 172-195 129-154 (443)
288 1z5z_A Helicase of the SNF2/RA 69.3 26 0.00087 31.9 9.8 96 186-300 92-193 (271)
289 2x8a_A Nuclear valosin-contain 69.0 0.79 2.7E-05 42.3 -0.7 53 140-195 6-61 (274)
290 1f9v_A Kinesin-like protein KA 68.9 2.3 7.8E-05 40.7 2.5 25 171-195 76-102 (347)
291 3tau_A Guanylate kinase, GMP k 68.7 2.3 7.9E-05 37.1 2.3 19 177-195 7-25 (208)
292 3trf_A Shikimate kinase, SK; a 68.6 2.2 7.7E-05 36.0 2.2 18 178-195 5-22 (185)
293 2heh_A KIF2C protein; kinesin, 68.4 3.4 0.00011 40.2 3.6 25 172-196 127-153 (387)
294 3b9p_A CG5977-PA, isoform A; A 68.2 2.2 7.4E-05 39.2 2.2 52 140-195 17-71 (297)
295 3bfn_A Kinesin-like protein KI 68.1 2.7 9.3E-05 40.8 2.9 23 173-195 92-116 (388)
296 2j41_A Guanylate kinase; GMP, 67.9 2.3 7.7E-05 36.5 2.1 20 176-195 4-23 (207)
297 3uk6_A RUVB-like 2; hexameric 67.6 2.3 7.8E-05 40.3 2.2 18 178-195 70-87 (368)
298 4b4t_L 26S protease subunit RP 67.5 1.3 4.3E-05 43.9 0.4 54 139-195 176-232 (437)
299 1qhx_A CPT, protein (chloramph 67.2 2.5 8.4E-05 35.4 2.2 18 178-195 3-20 (178)
300 2qor_A Guanylate kinase; phosp 67.2 2 6.8E-05 37.2 1.6 21 175-195 9-29 (204)
301 3fho_A ATP-dependent RNA helic 67.1 1.4 4.6E-05 44.4 0.6 74 215-298 356-433 (508)
302 4a2w_A RIG-I, retinoic acid in 66.7 14 0.00049 40.0 8.6 79 215-299 630-721 (936)
303 1ixz_A ATP-dependent metallopr 65.8 1.4 4.7E-05 39.6 0.3 53 140-195 12-66 (254)
304 3tr0_A Guanylate kinase, GMP k 65.8 2.9 9.8E-05 35.8 2.3 19 177-195 6-24 (205)
305 2ius_A DNA translocase FTSK; n 65.7 6 0.00021 39.9 5.0 28 177-204 166-193 (512)
306 3u4q_B ATP-dependent helicase/ 65.6 5.6 0.00019 44.3 5.2 40 181-227 4-43 (1166)
307 1ojl_A Transcriptional regulat 65.5 3.5 0.00012 38.4 3.0 19 177-195 24-42 (304)
308 3iij_A Coilin-interacting nucl 65.5 3.1 0.0001 35.0 2.4 20 176-195 9-28 (180)
309 1z6g_A Guanylate kinase; struc 65.4 3.1 0.00011 36.6 2.5 21 175-195 20-40 (218)
310 3lw7_A Adenylate kinase relate 65.4 2.6 8.8E-05 34.7 1.9 16 180-195 3-18 (179)
311 1zp6_A Hypothetical protein AT 65.4 2.4 8.3E-05 35.9 1.8 20 176-195 7-26 (191)
312 4b4t_K 26S protease regulatory 65.3 1.6 5.4E-05 43.1 0.6 54 139-195 167-223 (428)
313 1tf5_A Preprotein translocase 65.2 26 0.00088 37.5 9.8 55 216-274 432-488 (844)
314 1y63_A LMAJ004144AAA protein; 64.7 3 0.0001 35.4 2.3 19 177-195 9-27 (184)
315 2rep_A Kinesin-like protein KI 64.7 2.9 0.0001 40.4 2.3 25 171-195 107-133 (376)
316 1kag_A SKI, shikimate kinase I 64.3 3.3 0.00011 34.4 2.4 18 178-195 4-21 (173)
317 3ney_A 55 kDa erythrocyte memb 64.3 3.2 0.00011 36.3 2.4 19 177-195 18-36 (197)
318 1lv7_A FTSH; alpha/beta domain 64.2 2.8 9.7E-05 37.5 2.1 53 140-195 8-62 (257)
319 3jvv_A Twitching mobility prot 64.1 3.3 0.00011 39.7 2.6 20 176-195 121-140 (356)
320 3a8t_A Adenylate isopentenyltr 63.6 2.9 9.8E-05 39.9 2.0 18 178-195 40-57 (339)
321 2ewv_A Twitching motility prot 63.4 3.3 0.00011 39.9 2.5 20 176-195 134-153 (372)
322 2iut_A DNA translocase FTSK; n 63.3 7.1 0.00024 39.9 5.0 27 178-204 214-240 (574)
323 1s96_A Guanylate kinase, GMP k 63.2 3.4 0.00012 36.6 2.3 22 174-195 12-33 (219)
324 3exa_A TRNA delta(2)-isopenten 63.2 3.1 0.00011 39.3 2.2 17 179-195 4-20 (322)
325 1fuu_A Yeast initiation factor 63.2 1.5 5.2E-05 41.7 0.0 71 216-296 259-333 (394)
326 3b5x_A Lipid A export ATP-bind 63.2 16 0.00054 37.2 7.7 32 288-319 496-527 (582)
327 3a00_A Guanylate kinase, GMP k 63.0 3.5 0.00012 35.1 2.4 17 179-195 2-18 (186)
328 3foz_A TRNA delta(2)-isopenten 62.8 3.2 0.00011 39.1 2.2 16 180-195 12-27 (316)
329 1ex7_A Guanylate kinase; subst 62.7 3.2 0.00011 35.9 2.0 16 179-194 2-17 (186)
330 3vkg_A Dynein heavy chain, cyt 62.5 8 0.00027 47.4 5.9 47 149-196 874-924 (3245)
331 1kht_A Adenylate kinase; phosp 62.4 3.4 0.00012 34.8 2.2 18 178-195 3-20 (192)
332 2ze6_A Isopentenyl transferase 62.3 3.2 0.00011 37.5 2.0 16 180-195 3-18 (253)
333 2qmh_A HPR kinase/phosphorylas 61.7 3.4 0.00012 36.3 2.0 18 177-194 33-50 (205)
334 4gp7_A Metallophosphoesterase; 61.7 3.2 0.00011 34.9 1.8 20 177-196 8-27 (171)
335 1znw_A Guanylate kinase, GMP k 61.6 3.9 0.00013 35.5 2.4 22 174-195 16-37 (207)
336 1ry6_A Internal kinesin; kines 61.1 5.3 0.00018 38.4 3.4 19 177-195 82-102 (360)
337 4eun_A Thermoresistant glucoki 61.0 4 0.00014 35.1 2.3 19 177-195 28-46 (200)
338 4f4c_A Multidrug resistance pr 60.9 0.89 3E-05 51.5 -2.4 25 177-203 1104-1128(1321)
339 1u94_A RECA protein, recombina 60.9 8.7 0.0003 36.7 4.9 39 177-225 62-100 (356)
340 1iy2_A ATP-dependent metallopr 60.5 1.9 6.5E-05 39.4 0.1 54 139-195 35-90 (278)
341 2qp9_X Vacuolar protein sortin 60.4 3.9 0.00013 38.9 2.4 50 140-195 47-101 (355)
342 4fcw_A Chaperone protein CLPB; 60.4 4.4 0.00015 37.2 2.7 17 179-195 48-64 (311)
343 3h1t_A Type I site-specific re 60.3 36 0.0012 34.3 9.8 79 215-299 438-526 (590)
344 1um8_A ATP-dependent CLP prote 60.2 4 0.00014 39.0 2.4 18 178-195 72-89 (376)
345 3mm4_A Histidine kinase homolo 60.1 78 0.0027 26.7 10.9 133 175-339 17-161 (206)
346 3kb2_A SPBC2 prophage-derived 60.0 3.7 0.00013 33.9 1.9 16 180-195 3-18 (173)
347 4b4t_I 26S protease regulatory 59.9 2 6.9E-05 42.3 0.3 54 139-195 177-233 (437)
348 1xjc_A MOBB protein homolog; s 59.9 10 0.00035 32.2 4.7 24 180-204 6-29 (169)
349 2c9o_A RUVB-like 1; hexameric 59.8 3.8 0.00013 40.5 2.2 18 178-195 63-80 (456)
350 1knq_A Gluconate kinase; ALFA/ 59.7 3.6 0.00012 34.3 1.8 18 178-195 8-25 (175)
351 1ly1_A Polynucleotide kinase; 59.7 3.9 0.00013 34.0 2.0 16 180-195 4-19 (181)
352 3t15_A Ribulose bisphosphate c 59.6 3.7 0.00013 37.9 2.0 16 179-194 37-52 (293)
353 1tf7_A KAIC; homohexamer, hexa 58.7 33 0.0011 34.3 9.1 43 289-339 370-417 (525)
354 3nwj_A ATSK2; P loop, shikimat 58.2 5.3 0.00018 36.2 2.8 21 175-195 45-65 (250)
355 3d8b_A Fidgetin-like protein 1 58.0 4.3 0.00015 38.6 2.2 52 140-195 80-134 (357)
356 3cm0_A Adenylate kinase; ATP-b 58.0 3.4 0.00012 34.8 1.3 19 177-195 3-21 (186)
357 2r8r_A Sensor protein; KDPD, P 57.7 11 0.00037 33.7 4.6 20 177-196 4-24 (228)
358 1g8p_A Magnesium-chelatase 38 57.5 5.7 0.00019 37.1 3.0 18 178-195 45-62 (350)
359 1gm5_A RECG; helicase, replica 57.3 2.7 9.2E-05 44.8 0.7 81 215-301 577-668 (780)
360 1m7g_A Adenylylsulfate kinase; 57.2 6.3 0.00021 34.1 3.0 30 165-195 13-42 (211)
361 2r62_A Cell division protease 56.6 2.5 8.7E-05 38.1 0.3 18 178-195 44-61 (268)
362 3lnc_A Guanylate kinase, GMP k 56.6 4.3 0.00015 35.8 1.8 20 176-195 25-44 (231)
363 1w36_B RECB, exodeoxyribonucle 56.6 13 0.00044 41.4 6.1 59 180-238 18-78 (1180)
364 1rj9_A FTSY, signal recognitio 56.3 12 0.0004 34.9 4.9 18 178-195 102-119 (304)
365 3l9o_A ATP-dependent RNA helic 56.2 25 0.00085 38.9 8.2 74 216-295 441-553 (1108)
366 3crm_A TRNA delta(2)-isopenten 55.2 5.1 0.00017 37.9 2.2 16 180-195 7-22 (323)
367 3uie_A Adenylyl-sulfate kinase 55.2 4.8 0.00016 34.6 1.9 19 177-195 24-42 (200)
368 1gku_B Reverse gyrase, TOP-RG; 55.0 15 0.00051 40.4 6.2 77 216-300 275-352 (1054)
369 2c95_A Adenylate kinase 1; tra 54.7 5.8 0.0002 33.5 2.3 20 176-195 7-26 (196)
370 2v54_A DTMP kinase, thymidylat 54.6 5.8 0.0002 33.8 2.3 19 177-195 3-21 (204)
371 2bdt_A BH3686; alpha-beta prot 54.4 4.1 0.00014 34.5 1.3 17 179-195 3-19 (189)
372 1f2t_A RAD50 ABC-ATPase; DNA d 54.4 5.5 0.00019 32.8 2.0 15 180-194 25-39 (149)
373 3d3q_A TRNA delta(2)-isopenten 54.2 5.5 0.00019 37.9 2.2 16 180-195 9-24 (340)
374 2r2a_A Uncharacterized protein 54.1 5.5 0.00019 34.7 2.1 50 291-345 88-138 (199)
375 2rhm_A Putative kinase; P-loop 54.0 5 0.00017 33.8 1.8 18 178-195 5-22 (193)
376 3kta_A Chromosome segregation 53.9 5.5 0.00019 33.4 2.0 16 180-195 28-43 (182)
377 4h1g_A Maltose binding protein 53.8 7.7 0.00026 40.8 3.5 25 171-195 454-480 (715)
378 3t61_A Gluconokinase; PSI-biol 53.7 5.5 0.00019 34.1 2.0 24 374-397 159-182 (202)
379 2w00_A HSDR, R.ECOR124I; ATP-b 53.3 81 0.0028 34.6 11.5 26 215-240 536-561 (1038)
380 3eph_A TRNA isopentenyltransfe 52.9 5.7 0.00019 38.8 2.1 22 180-202 4-25 (409)
381 4ddu_A Reverse gyrase; topoiso 52.8 15 0.00053 40.5 5.8 78 216-301 309-388 (1104)
382 3c8u_A Fructokinase; YP_612366 52.5 5.7 0.00019 34.4 1.9 18 177-194 21-38 (208)
383 1gvn_B Zeta; postsegregational 52.4 5.8 0.0002 36.6 2.0 17 179-195 34-50 (287)
384 4dzz_A Plasmid partitioning pr 52.0 27 0.00093 29.4 6.3 12 184-195 8-19 (206)
385 2r2a_A Uncharacterized protein 51.9 8.8 0.0003 33.4 3.0 16 180-195 7-22 (199)
386 3qf7_A RAD50; ABC-ATPase, ATPa 51.9 5.8 0.0002 38.0 2.0 16 180-195 25-40 (365)
387 3b9q_A Chloroplast SRP recepto 51.9 13 0.00046 34.4 4.5 19 177-195 99-117 (302)
388 2pez_A Bifunctional 3'-phospho 51.5 6 0.00021 33.1 1.9 19 177-195 4-22 (179)
389 1zd8_A GTP:AMP phosphotransfer 51.5 6.5 0.00022 34.4 2.2 19 177-195 6-24 (227)
390 1tev_A UMP-CMP kinase; ploop, 51.5 5.8 0.0002 33.3 1.8 18 178-195 3-20 (196)
391 3k1j_A LON protease, ATP-depen 51.3 9.9 0.00034 39.0 3.8 23 173-195 55-77 (604)
392 2bwj_A Adenylate kinase 5; pho 50.9 7.9 0.00027 32.7 2.6 19 177-195 11-29 (199)
393 3asz_A Uridine kinase; cytidin 50.9 6.2 0.00021 34.0 1.9 19 177-195 5-23 (211)
394 4a4z_A Antiviral helicase SKI2 50.6 68 0.0023 34.9 10.5 79 216-301 336-453 (997)
395 1aky_A Adenylate kinase; ATP:A 50.3 7.3 0.00025 33.9 2.3 18 178-195 4-21 (220)
396 1zak_A Adenylate kinase; ATP:A 50.2 7 0.00024 34.1 2.1 18 178-195 5-22 (222)
397 1np6_A Molybdopterin-guanine d 50.1 18 0.00061 30.6 4.7 15 180-194 8-22 (174)
398 1zuh_A Shikimate kinase; alpha 50.1 7 0.00024 32.3 2.0 17 179-195 8-24 (168)
399 3pxg_A Negative regulator of g 50.0 9.5 0.00032 37.8 3.3 25 178-203 201-225 (468)
400 1nks_A Adenylate kinase; therm 49.8 6.7 0.00023 32.8 1.9 16 180-195 3-18 (194)
401 3hu3_A Transitional endoplasmi 49.7 7.1 0.00024 39.1 2.3 18 178-195 238-255 (489)
402 3tif_A Uncharacterized ABC tra 49.4 7.9 0.00027 34.5 2.4 33 288-320 161-193 (235)
403 3f9v_A Minichromosome maintena 49.3 7 0.00024 40.2 2.2 15 180-194 329-343 (595)
404 2fwr_A DNA repair protein RAD2 49.2 11 0.00039 36.8 3.7 71 215-300 348-422 (472)
405 2wwf_A Thymidilate kinase, put 49.1 7.8 0.00027 33.2 2.2 19 177-195 9-27 (212)
406 2iyv_A Shikimate kinase, SK; t 48.9 8.3 0.00028 32.3 2.3 17 179-195 3-19 (184)
407 2fsf_A Preprotein translocase 48.9 47 0.0016 35.4 8.5 56 215-274 440-497 (853)
408 1ye8_A Protein THEP1, hypothet 48.9 8.7 0.0003 32.6 2.4 16 180-195 2-17 (178)
409 3auy_A DNA double-strand break 48.8 6.9 0.00024 37.4 2.0 16 180-195 27-42 (371)
410 2yvu_A Probable adenylyl-sulfa 48.7 7.1 0.00024 32.9 1.9 19 177-195 12-30 (186)
411 1in4_A RUVB, holliday junction 48.4 9.7 0.00033 35.7 2.9 17 179-195 52-68 (334)
412 1nn5_A Similar to deoxythymidy 48.4 8.2 0.00028 33.0 2.3 19 177-195 8-26 (215)
413 1via_A Shikimate kinase; struc 48.4 8.3 0.00028 32.1 2.2 16 180-195 6-21 (175)
414 1qf9_A UMP/CMP kinase, protein 48.3 7.4 0.00025 32.6 1.9 16 180-195 8-23 (194)
415 3fb4_A Adenylate kinase; psych 48.2 7.4 0.00025 33.6 2.0 16 180-195 2-17 (216)
416 2cdn_A Adenylate kinase; phosp 47.6 8.7 0.0003 32.8 2.3 18 178-195 20-37 (201)
417 1e6c_A Shikimate kinase; phosp 47.5 7.8 0.00027 31.9 1.9 17 179-195 3-19 (173)
418 2i3b_A HCR-ntpase, human cance 47.2 12 0.0004 32.2 3.0 18 178-195 1-18 (189)
419 2plr_A DTMP kinase, probable t 47.0 7.5 0.00026 33.2 1.8 19 177-195 3-21 (213)
420 4akg_A Glutathione S-transfera 46.9 8 0.00027 46.8 2.5 21 175-195 1264-1284(2695)
421 1cke_A CK, MSSA, protein (cyti 46.8 9.1 0.00031 33.2 2.3 17 179-195 6-22 (227)
422 2v9p_A Replication protein E1; 46.6 11 0.00038 35.2 2.9 19 177-195 125-143 (305)
423 2vli_A Antibiotic resistance p 46.5 7.8 0.00027 32.3 1.8 19 177-195 4-22 (183)
424 3dl0_A Adenylate kinase; phosp 46.4 8.2 0.00028 33.3 2.0 16 180-195 2-17 (216)
425 2qt1_A Nicotinamide riboside k 46.1 9.1 0.00031 32.8 2.2 19 177-195 20-38 (207)
426 2if2_A Dephospho-COA kinase; a 46.1 8.6 0.00029 32.8 2.0 16 180-195 3-18 (204)
427 1ukz_A Uridylate kinase; trans 46.0 8.5 0.00029 32.8 2.0 16 180-195 17-32 (203)
428 2jaq_A Deoxyguanosine kinase; 45.7 8.5 0.00029 32.6 1.9 16 180-195 2-17 (205)
429 1g41_A Heat shock protein HSLU 45.7 9.3 0.00032 37.7 2.4 18 178-195 50-67 (444)
430 2og2_A Putative signal recogni 45.7 18 0.00063 34.5 4.4 18 178-195 157-174 (359)
431 2cbz_A Multidrug resistance-as 45.3 9.9 0.00034 33.9 2.4 18 177-194 30-47 (237)
432 2www_A Methylmalonic aciduria 45.1 1.9E+02 0.0067 26.9 13.0 24 329-352 252-275 (349)
433 1ak2_A Adenylate kinase isoenz 45.0 9.9 0.00034 33.5 2.3 19 177-195 15-33 (233)
434 1jjv_A Dephospho-COA kinase; P 44.7 9.3 0.00032 32.7 2.0 16 180-195 4-19 (206)
435 2v3c_C SRP54, signal recogniti 44.6 19 0.00066 35.3 4.5 17 179-195 100-116 (432)
436 2pbr_A DTMP kinase, thymidylat 44.6 9.2 0.00031 32.0 1.9 16 180-195 2-17 (195)
437 3qks_A DNA double-strand break 44.5 9.4 0.00032 33.1 2.0 16 180-195 25-40 (203)
438 3be4_A Adenylate kinase; malar 44.4 10 0.00034 33.0 2.2 18 178-195 5-22 (217)
439 4e22_A Cytidylate kinase; P-lo 44.3 10 0.00035 34.0 2.3 19 177-195 26-44 (252)
440 2ce7_A Cell division protein F 44.1 9.1 0.00031 38.2 2.1 53 140-195 12-66 (476)
441 2pt5_A Shikimate kinase, SK; a 43.9 9.5 0.00033 31.3 1.9 16 180-195 2-17 (168)
442 4ag6_A VIRB4 ATPase, type IV s 43.9 16 0.00055 34.9 3.8 21 177-197 34-54 (392)
443 3bs4_A Uncharacterized protein 43.8 26 0.00088 31.8 4.9 52 177-239 20-71 (260)
444 2bbw_A Adenylate kinase 4, AK4 43.4 11 0.00037 33.5 2.3 18 178-195 27-44 (246)
445 2z0h_A DTMP kinase, thymidylat 43.2 10 0.00034 32.0 2.0 15 181-195 3-17 (197)
446 1sgw_A Putative ABC transporte 43.2 12 0.0004 32.9 2.5 32 288-319 149-180 (214)
447 1tf7_A KAIC; homohexamer, hexa 43.0 19 0.00066 36.0 4.3 30 176-205 37-66 (525)
448 3a4m_A L-seryl-tRNA(SEC) kinas 42.9 10 0.00034 34.2 2.0 18 178-195 4-21 (260)
449 2pze_A Cystic fibrosis transme 42.8 11 0.00039 33.3 2.3 18 177-194 33-50 (229)
450 1z63_A Helicase of the SNF2/RA 42.6 76 0.0026 31.0 8.7 77 215-300 340-422 (500)
451 3kta_B Chromosome segregation 42.5 15 0.0005 31.2 2.9 40 290-337 86-125 (173)
452 3cmu_A Protein RECA, recombina 42.5 20 0.00069 42.1 4.8 46 177-233 1080-1125(2050)
453 1nij_A Hypothetical protein YJ 42.3 23 0.0008 32.9 4.5 15 181-195 7-21 (318)
454 1uf9_A TT1252 protein; P-loop, 41.9 11 0.00036 32.0 1.9 16 180-195 10-25 (203)
455 2pcj_A ABC transporter, lipopr 41.7 12 0.00041 33.0 2.3 32 288-319 156-187 (224)
456 3pxi_A Negative regulator of g 41.7 11 0.00038 39.7 2.4 18 178-195 201-218 (758)
457 3gfo_A Cobalt import ATP-bindi 41.6 12 0.0004 34.3 2.3 32 288-319 159-190 (275)
458 1rz3_A Hypothetical protein rb 41.2 11 0.00039 32.2 2.0 18 178-195 22-39 (201)
459 1e4v_A Adenylate kinase; trans 41.1 11 0.00038 32.5 1.9 16 180-195 2-17 (214)
460 2ff7_A Alpha-hemolysin translo 41.0 14 0.00048 33.1 2.7 32 288-319 161-192 (247)
461 1g6h_A High-affinity branched- 41.0 13 0.00043 33.6 2.4 31 289-319 170-200 (257)
462 2ghi_A Transport protein; mult 40.9 14 0.00048 33.4 2.7 30 290-319 173-202 (260)
463 3cf2_A TER ATPase, transitiona 40.8 6.7 0.00023 41.8 0.5 53 140-195 473-528 (806)
464 2xgj_A ATP-dependent RNA helic 40.7 39 0.0013 36.9 6.6 77 216-299 343-458 (1010)
465 1ji0_A ABC transporter; ATP bi 40.6 13 0.00044 33.2 2.4 32 288-319 155-186 (240)
466 1nkt_A Preprotein translocase 40.5 83 0.0028 33.9 8.7 55 216-274 460-516 (922)
467 2p5t_B PEZT; postsegregational 40.4 8.1 0.00028 34.6 1.0 17 179-195 33-49 (253)
468 3qkt_A DNA double-strand break 40.3 11 0.00039 35.4 2.0 15 181-195 26-40 (339)
469 4g1u_C Hemin import ATP-bindin 39.9 13 0.00045 33.8 2.3 30 290-319 165-194 (266)
470 1b0u_A Histidine permease; ABC 39.8 13 0.00046 33.6 2.3 31 289-319 170-200 (262)
471 3fkq_A NTRC-like two-domain pr 39.7 72 0.0025 30.1 7.7 16 181-196 146-162 (373)
472 1vht_A Dephospho-COA kinase; s 39.4 12 0.00042 32.2 2.0 17 179-195 5-21 (218)
473 2i3b_A HCR-ntpase, human cance 39.2 20 0.00067 30.8 3.2 29 288-316 103-133 (189)
474 3cmw_A Protein RECA, recombina 39.1 26 0.0009 40.5 5.0 40 177-226 33-72 (1706)
475 2zu0_C Probable ATP-dependent 39.0 14 0.00048 33.6 2.3 30 290-319 182-211 (267)
476 1ypw_A Transitional endoplasmi 38.9 11 0.00038 40.2 1.8 19 177-195 237-255 (806)
477 3vkg_A Dynein heavy chain, cyt 38.9 12 0.00041 45.9 2.3 20 175-194 1301-1320(3245)
478 1mv5_A LMRA, multidrug resista 38.7 13 0.00046 33.1 2.1 30 290-319 157-186 (243)
479 2yz2_A Putative ABC transporte 38.7 14 0.00049 33.5 2.4 32 288-319 154-185 (266)
480 2xb4_A Adenylate kinase; ATP-b 38.6 13 0.00043 32.6 1.9 16 180-195 2-17 (223)
481 3ice_A Transcription terminati 38.6 2.8E+02 0.0097 26.8 13.5 34 163-196 156-192 (422)
482 2qi9_C Vitamin B12 import ATP- 38.6 14 0.00049 33.2 2.3 27 293-319 154-180 (249)
483 2f1r_A Molybdopterin-guanine d 38.5 8.9 0.00031 32.4 0.9 16 180-195 4-19 (171)
484 4ehx_A Tetraacyldisaccharide 4 38.4 36 0.0012 31.8 5.2 23 181-204 38-63 (315)
485 1vpl_A ABC transporter, ATP-bi 38.4 15 0.0005 33.3 2.3 32 288-319 162-193 (256)
486 1cs1_A CGS, protein (cystathio 38.4 2.4E+02 0.0083 26.0 12.4 105 175-303 64-179 (386)
487 1htw_A HI0065; nucleotide-bind 38.1 13 0.00046 30.8 1.9 19 176-194 31-49 (158)
488 2nq2_C Hypothetical ABC transp 38.0 15 0.0005 33.2 2.3 31 289-319 145-175 (253)
489 3nh6_A ATP-binding cassette SU 37.6 11 0.00039 35.1 1.5 31 289-319 207-237 (306)
490 2d2e_A SUFC protein; ABC-ATPas 37.5 17 0.00059 32.5 2.7 30 290-319 161-190 (250)
491 3jzl_A Putative cystathionine 37.5 87 0.003 30.1 8.0 10 293-302 197-206 (409)
492 3tlx_A Adenylate kinase 2; str 37.3 14 0.00047 32.9 1.9 19 177-195 28-46 (243)
493 2dhr_A FTSH; AAA+ protein, hex 37.1 13 0.00046 37.2 2.0 53 140-195 27-81 (499)
494 2olj_A Amino acid ABC transpor 37.0 16 0.00054 33.2 2.3 32 288-319 175-206 (263)
495 3mwy_W Chromo domain-containin 36.9 2.8E+02 0.0095 29.1 12.4 88 215-316 571-665 (800)
496 1r6b_X CLPA protein; AAA+, N-t 36.8 21 0.00073 37.4 3.6 16 180-195 490-505 (758)
497 1r6b_X CLPA protein; AAA+, N-t 36.8 14 0.00049 38.7 2.3 18 178-195 207-224 (758)
498 2ihy_A ABC transporter, ATP-bi 36.8 16 0.00054 33.5 2.3 31 289-319 178-208 (279)
499 2ixe_A Antigen peptide transpo 36.7 18 0.00061 32.9 2.7 32 288-319 172-203 (271)
500 2grj_A Dephospho-COA kinase; T 36.7 15 0.0005 31.7 2.0 16 180-195 14-29 (192)
No 1
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=1.8e-41 Score=316.23 Aligned_cols=219 Identities=27% Similarity=0.405 Sum_probs=199.2
Q ss_pred CCCcccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCC
Q 015712 134 GSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMK 213 (402)
Q Consensus 134 ~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~ 213 (402)
...+.++.+|+++++++.++++|.++||..|+++|.++|+.++.|+|++++||||||||++|++|++..+...... ..
T Consensus 22 ~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~--~~ 99 (242)
T 3fe2_A 22 HNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFL--ER 99 (242)
T ss_dssp SCCCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCC--CT
T ss_pred CCCCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhcccc--cc
Confidence 3456678899999999999999999999999999999999999999999999999999999999999998753211 12
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeE
Q 015712 214 PMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRY 293 (402)
Q Consensus 214 ~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~ 293 (402)
..++++|||+||++|+.|+++.++.+....++++..++||.+...+...+..+++|+|+||++|.+++.++.+.+.++++
T Consensus 100 ~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~ 179 (242)
T 3fe2_A 100 GDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTY 179 (242)
T ss_dssp TCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCE
T ss_pred CCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccE
Confidence 35789999999999999999999999998899999999999998888888888999999999999999988888999999
Q ss_pred EEEcCCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhccccccCCce
Q 015712 294 VVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAGKV 362 (402)
Q Consensus 294 lVlDEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~~~~~~~~ 362 (402)
|||||||+|++++|...+..|+..++ .++|+++||||+++.+..+++.++++|..+.++..
T Consensus 180 lViDEah~l~~~~~~~~~~~i~~~~~--------~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 240 (242)
T 3fe2_A 180 LVLDEADRMLDMGFEPQIRKIVDQIR--------PDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGAL 240 (242)
T ss_dssp EEETTHHHHHHTTCHHHHHHHHTTSC--------SSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC-
T ss_pred EEEeCHHHHhhhCcHHHHHHHHHhCC--------ccceEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 99999999999999999999998886 47899999999999999999999999988876543
No 2
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=9.6e-40 Score=330.15 Aligned_cols=249 Identities=24% Similarity=0.392 Sum_probs=214.6
Q ss_pred CCcccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCC
Q 015712 135 SNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKP 214 (402)
Q Consensus 135 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~ 214 (402)
..+.++.+|++++|++.++++|.++||..|||+|.++||.++.|+|++++|+||||||++|++|++..+...... ...
T Consensus 50 ~~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~--~~~ 127 (434)
T 2db3_A 50 DVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHE--LEL 127 (434)
T ss_dssp SCCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCC--CCT
T ss_pred CCCCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccc--ccc
Confidence 445678899999999999999999999999999999999999999999999999999999999999998864321 123
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEE
Q 015712 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYV 294 (402)
Q Consensus 215 ~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~l 294 (402)
.++++|||+|||+||.|+++.++.++...++++++++||.....+...+..+++|+|+||++|++++.++.+.+.++++|
T Consensus 128 ~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~l 207 (434)
T 2db3_A 128 GRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFV 207 (434)
T ss_dssp TCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEE
T ss_pred CCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeE
Confidence 57899999999999999999999999888999999999999998888888999999999999999999888889999999
Q ss_pred EEcCCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhccccccCCceeeeeeecccceE
Q 015712 295 VLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAGKVTAMLLEMDQAEV 374 (402)
Q Consensus 295 VlDEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~~~~~~~~~~~~~~v~q~~~ 374 (402)
||||||+|+++||..++..|+..+.. ..++|+++||||++..+..++..++.++..+.++........+.|.+.
T Consensus 208 VlDEah~~~~~gf~~~~~~i~~~~~~------~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~ 281 (434)
T 2db3_A 208 VLDEADRMLDMGFSEDMRRIMTHVTM------RPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIY 281 (434)
T ss_dssp EEETHHHHTSTTTHHHHHHHHHCTTS------CSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEE
T ss_pred EEccHhhhhccCcHHHHHHHHHhcCC------CCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEE
Confidence 99999999999999999999987632 247899999999999999999999999887766665555555555544
Q ss_pred EeecccHHHHHHHHHHHHhh
Q 015712 375 FDLTESQDALKKKVVEAMDS 394 (402)
Q Consensus 375 ~~~~e~~~~~~~~l~~~l~~ 394 (402)
... ...+...|.++|..
T Consensus 282 ~~~---~~~k~~~l~~~l~~ 298 (434)
T 2db3_A 282 EVN---KYAKRSKLIEILSE 298 (434)
T ss_dssp ECC---GGGHHHHHHHHHHH
T ss_pred EeC---cHHHHHHHHHHHHh
Confidence 322 23445556666554
No 3
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=1.5e-39 Score=304.97 Aligned_cols=209 Identities=25% Similarity=0.419 Sum_probs=191.9
Q ss_pred cccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCC
Q 015712 137 AEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMH 216 (402)
Q Consensus 137 ~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~ 216 (402)
.....+|+++++++.++++|..+||..|+++|.++|+.++.|+|++++||||+|||++|++|++..+... ..+
T Consensus 39 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~-------~~~ 111 (249)
T 3ber_A 39 EEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLET-------PQR 111 (249)
T ss_dssp HHHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHS-------CCS
T ss_pred ccccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcC-------CCC
Confidence 4457789999999999999999999999999999999999999999999999999999999999988763 246
Q ss_pred CeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhc-CCCCCCCeeEEE
Q 015712 217 PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIED-RNVSCDDIRYVV 295 (402)
Q Consensus 217 ~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~-~~~~l~~l~~lV 295 (402)
+++|||+||++|+.|+++.++.+....++++..++|+.....+...+..+++|+|+||++|.+++.+ ..+.+.++++||
T Consensus 112 ~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lV 191 (249)
T 3ber_A 112 LFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLV 191 (249)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEE
Confidence 7899999999999999999999988889999999999998888888888899999999999999886 557789999999
Q ss_pred EcCCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhccccccCC
Q 015712 296 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAG 360 (402)
Q Consensus 296 lDEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~~~~~~ 360 (402)
|||||++++++|...+..++..++ .++|+++||||++..+.++++.++++|..+.++
T Consensus 192 iDEah~l~~~~~~~~l~~i~~~~~--------~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v~ 248 (249)
T 3ber_A 192 MDEADRILNMDFETEVDKILKVIP--------RDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS 248 (249)
T ss_dssp ECSHHHHHHTTCHHHHHHHHHSSC--------SSSEEEEEESSCCHHHHHHHHHHCSSCEEEECC
T ss_pred EcChhhhhccChHHHHHHHHHhCC--------CCCeEEEEeccCCHHHHHHHHHHCCCCEEEEec
Confidence 999999999999999999998876 378999999999999999999999999877543
No 4
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=7.1e-40 Score=302.32 Aligned_cols=216 Identities=24% Similarity=0.338 Sum_probs=185.3
Q ss_pred cCCCccccccccc-CCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCC
Q 015712 133 SGSNAEVVSSFQE-LGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLP 211 (402)
Q Consensus 133 ~~~~~~~~~~f~~-l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~ 211 (402)
....+.+..+|.+ +++++.++++|.++||..|+++|.++|+.+++|+|++++||||+|||++|++|++..+...... .
T Consensus 11 ~~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~-~ 89 (228)
T 3iuy_A 11 KRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPIS-R 89 (228)
T ss_dssp CCCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC-------
T ss_pred cCcCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccch-h
Confidence 3445667888999 8999999999999999999999999999999999999999999999999999999987643211 0
Q ss_pred CCCCCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCe
Q 015712 212 MKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDI 291 (402)
Q Consensus 212 ~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l 291 (402)
....++++|||+||++||.|+++.+..+. ..++++..++|+.....+...+..+++|+|+||++|.+++..+.+.+.++
T Consensus 90 ~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 90 EQRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp ---CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred hccCCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 12357899999999999999999999986 45788999999998888878888889999999999999999888889999
Q ss_pred eEEEEcCCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhcccccc
Q 015712 292 RYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDN 358 (402)
Q Consensus 292 ~~lVlDEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~~~~ 358 (402)
++|||||||++++++|...+..++..++ .++|+++||||+++.+.+++..++++|..+.
T Consensus 169 ~~lViDEah~~~~~~~~~~~~~i~~~~~--------~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 169 TYLVIDEADKMLDMEFEPQIRKILLDVR--------PDRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp CEEEECCHHHHHHTTCHHHHHHHHHHSC--------SSCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred eEEEEECHHHHhccchHHHHHHHHHhCC--------cCCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 9999999999999999999999998886 4789999999999999999999999997764
No 5
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=5.7e-40 Score=307.84 Aligned_cols=230 Identities=26% Similarity=0.396 Sum_probs=193.4
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCC--CCCCC
Q 015712 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLP--MKPMH 216 (402)
Q Consensus 139 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~--~~~~~ 216 (402)
++.+|++++|++.++++|..+||..|+++|.++|+.++.|+|++++||||+|||++|++|++..+........ ....+
T Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~ 100 (253)
T 1wrb_A 21 VIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAY 100 (253)
T ss_dssp CCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBC
T ss_pred ccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCC
Confidence 5778999999999999999999999999999999999999999999999999999999999998875431110 02245
Q ss_pred CeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEE
Q 015712 217 PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVL 296 (402)
Q Consensus 217 ~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVl 296 (402)
+++|||+||++|+.|+++.++.+....++.++.++|+.....+...+..+++|+|+||++|.+++..+.+.+.++++|||
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lVi 180 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVL 180 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEE
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEE
Confidence 79999999999999999999999888889999999999988888888889999999999999999988888999999999
Q ss_pred cCCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhccccccCCceeeeeeecccc
Q 015712 297 DEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAGKVTAMLLEMDQA 372 (402)
Q Consensus 297 DEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~~~~~~~~~~~~~~v~q~ 372 (402)
||||+|++++|...+..|+..+... ...++|+++||||+++.+..+++.++.+|..+.++.......++.|.
T Consensus 181 DEah~~~~~~~~~~~~~i~~~~~~~----~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~q~ 252 (253)
T 1wrb_A 181 DEADRMLDMGFEPQIRKIIEESNMP----SGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTSDSIKQE 252 (253)
T ss_dssp ETHHHHHHTTCHHHHHHHHHSSCCC----CGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC------------
T ss_pred eCHHHHHhCchHHHHHHHHhhccCC----CCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCCCCcCCceec
Confidence 9999999999999999999854310 11267999999999999999999999999888777666555555553
No 6
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=5.4e-40 Score=316.46 Aligned_cols=205 Identities=24% Similarity=0.317 Sum_probs=182.2
Q ss_pred cccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC--CcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCC
Q 015712 137 AEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNG--KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKP 214 (402)
Q Consensus 137 ~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g--~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~ 214 (402)
.....+|++++|++.++++|..+||..||++|.++||.++.| +|++++||||||||++|++|+++.+... .
T Consensus 88 ~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~-------~ 160 (300)
T 3fmo_B 88 LYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-------N 160 (300)
T ss_dssp CCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTT-------S
T ss_pred cCCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhcc-------C
Confidence 345788999999999999999999999999999999999997 9999999999999999999999988653 3
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHHhhccC-CcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhc-CCCCCCCee
Q 015712 215 MHPRAIVLCTTEESADQGFHMAKFISHCA-RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIED-RNVSCDDIR 292 (402)
Q Consensus 215 ~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~-~~~~l~~l~ 292 (402)
.++++|||+|||+||.|++..++.++... ++.+.+++|+...... ...+++|+||||++|++++.+ +.+.+.+++
T Consensus 161 ~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~ 237 (300)
T 3fmo_B 161 KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIK 237 (300)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTTCCCCGGGCS
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh---hcCCCCEEEECHHHHHHHHHhcCCCChhhce
Confidence 57899999999999999999999988764 6888888888765432 245789999999999999976 567889999
Q ss_pred EEEEcCCCcccc-CCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhccccccC
Q 015712 293 YVVLDEADTLFD-RGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNA 359 (402)
Q Consensus 293 ~lVlDEad~~l~-~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~~~~~ 359 (402)
+|||||||+|++ .+|...+..|+..++ .++|+++||||+++.+..+++.++++|..+.+
T Consensus 238 ~lVlDEad~l~~~~~~~~~~~~i~~~~~--------~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~ 297 (300)
T 3fmo_B 238 VFVLDEADVMIATQGHQDQSIRIQRMLP--------RNCQMLLFSATFEDSVWKFAQKVVPDPNVIKL 297 (300)
T ss_dssp EEEETTHHHHHHSTTHHHHHHHHHTTSC--------TTCEEEEEESCCCHHHHHHHHHHSSSCEEEEE
T ss_pred EEEEeCHHHHhhccCcHHHHHHHHHhCC--------CCCEEEEEeccCCHHHHHHHHHHCCCCeEEEe
Confidence 999999999998 689999999988776 47899999999999999999999999987654
No 7
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=9e-39 Score=289.83 Aligned_cols=202 Identities=26% Similarity=0.365 Sum_probs=186.1
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEE
Q 015712 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAI 220 (402)
Q Consensus 141 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~L 220 (402)
.+|++++|++.++++|.++||..|+++|.++++.++.|+|+++++|||+|||++|++|++..+... ..++++|
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~-------~~~~~~l 75 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLK-------KDNIQAM 75 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTT-------SCSCCEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhccc-------CCCeeEE
Confidence 469999999999999999999999999999999999999999999999999999999999887542 2577999
Q ss_pred EEcCchHHHHHHHHHHHHhhccC-CcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCC
Q 015712 221 VLCTTEESADQGFHMAKFISHCA-RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 299 (402)
Q Consensus 221 vl~PtreLa~Qi~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEa 299 (402)
|++||++|+.|+++.+..+.... ++.+..++|+.....+...+..+++|+|+||+++.+++.++...+.++++||+|||
T Consensus 76 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEa 155 (206)
T 1vec_A 76 VIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEA 155 (206)
T ss_dssp EECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETH
T ss_pred EEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEECh
Confidence 99999999999999999988776 78899999999988887788888999999999999999988888999999999999
Q ss_pred CccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhccccc
Q 015712 300 DTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERD 357 (402)
Q Consensus 300 d~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~~~ 357 (402)
|++++.+|...+..++..++ .+.|+++||||+++.+.++++.++.+|..+
T Consensus 156 h~~~~~~~~~~l~~i~~~~~--------~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 156 DKLLSQDFVQIMEDIILTLP--------KNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp HHHTSTTTHHHHHHHHHHSC--------TTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred HHhHhhCcHHHHHHHHHhCC--------ccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 99999999999999998886 378999999999999999999999988654
No 8
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=2.5e-39 Score=300.93 Aligned_cols=211 Identities=25% Similarity=0.356 Sum_probs=179.3
Q ss_pred CCcccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCC
Q 015712 135 SNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKP 214 (402)
Q Consensus 135 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~ 214 (402)
..+.++.+|++++|++.++++|..+||..|+++|.++|+.++.|+|++++||||+|||++|++|++..+... .
T Consensus 24 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~-------~ 96 (237)
T 3bor_A 24 NWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE-------F 96 (237)
T ss_dssp ---CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTT-------S
T ss_pred CCCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc-------C
Confidence 344567889999999999999999999999999999999999999999999999999999999999987542 2
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcCC-ccEEEeCchhhHHHhhcCCCCCCCeeE
Q 015712 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAP-IGMLIATPSEVLQHIEDRNVSCDDIRY 293 (402)
Q Consensus 215 ~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~-~~IlV~TP~~l~~~l~~~~~~l~~l~~ 293 (402)
.++++|||+||++|+.|+++.++.++...++.+..++|+.....+...+..+ ++|+|+||++|.+++..+.+.+.++++
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~ 176 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKM 176 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCE
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcE
Confidence 4679999999999999999999999888888999999998877666666555 899999999999999988888899999
Q ss_pred EEEcCCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhccccccCC
Q 015712 294 VVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAG 360 (402)
Q Consensus 294 lVlDEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~~~~~~ 360 (402)
|||||||+|++++|...+..+++.++ .++|+++||||+++.+.++++.|+++|..+.++
T Consensus 177 lViDEah~~~~~~~~~~l~~i~~~~~--------~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~ 235 (237)
T 3bor_A 177 FVLDEADEMLSRGFKDQIYEIFQKLN--------TSIQVVLLSATMPTDVLEVTKKFMRDPIRILVK 235 (237)
T ss_dssp EEEESHHHHHHTTCHHHHHHHHHHSC--------TTCEEEEECSSCCHHHHHHHHHHCSSCEEEC--
T ss_pred EEECCchHhhccCcHHHHHHHHHhCC--------CCCeEEEEEEecCHHHHHHHHHHCCCCEEEEec
Confidence 99999999999999999999998886 478999999999999999999999999877553
No 9
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=6.1e-39 Score=296.93 Aligned_cols=210 Identities=23% Similarity=0.285 Sum_probs=184.7
Q ss_pred CCCcccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCC
Q 015712 134 GSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMK 213 (402)
Q Consensus 134 ~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~ 213 (402)
+..+....+|+++++++.++++|.++||..|+++|.++++.++.|+|+++++|||+|||++|++|++..+...
T Consensus 17 ~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~------- 89 (230)
T 2oxc_A 17 DVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLE------- 89 (230)
T ss_dssp -------CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT-------
T ss_pred CCCCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc-------
Confidence 4445567889999999999999999999999999999999999999999999999999999999999987642
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHHhhccC-CcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCee
Q 015712 214 PMHPRAIVLCTTEESADQGFHMAKFISHCA-RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIR 292 (402)
Q Consensus 214 ~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~ 292 (402)
..++++|||+||++|+.|+++.++.+.... ++++..++|+.....+...+. +++|+|+||++|.+++..+.+.+.+++
T Consensus 90 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~Iiv~Tp~~l~~~~~~~~~~~~~~~ 168 (230)
T 2oxc_A 90 NLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLK-KCHIAVGSPGRIKQLIELDYLNPGSIR 168 (230)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTT-SCSEEEECHHHHHHHHHTTSSCGGGCC
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhcc-CCCEEEECHHHHHHHHhcCCcccccCC
Confidence 246899999999999999999999987665 789999999998877666554 689999999999999988888889999
Q ss_pred EEEEcCCCccccCC-CHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhccccccC
Q 015712 293 YVVLDEADTLFDRG-FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNA 359 (402)
Q Consensus 293 ~lVlDEad~~l~~g-f~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~~~~~ 359 (402)
+|||||||+++++| |...+..|++.++ .++|+++||||+++.+.+++..|+++|..+.+
T Consensus 169 ~lViDEah~~~~~~~~~~~~~~i~~~~~--------~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 169 LFILDEADKLLEEGSFQEQINWIYSSLP--------ASKQMLAVSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp EEEESSHHHHHSTTSSHHHHHHHHHHSC--------SSCEEEEEESCCCHHHHHHHTTTCSSCEEECC
T ss_pred EEEeCCchHhhcCcchHHHHHHHHHhCC--------CCCeEEEEEeccCHHHHHHHHHHcCCCeEEEc
Confidence 99999999999998 9999999999886 37899999999999999999999999877644
No 10
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=2.4e-39 Score=297.09 Aligned_cols=205 Identities=26% Similarity=0.413 Sum_probs=185.6
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeE
Q 015712 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRA 219 (402)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 219 (402)
..+|+++++++.++++|.++||..|+++|.++++.+++|+|+++++|||+|||++|++|++..+... ..++++
T Consensus 3 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~-------~~~~~~ 75 (219)
T 1q0u_A 3 ETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPE-------RAEVQA 75 (219)
T ss_dssp -CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTT-------SCSCCE
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhC-------cCCceE
Confidence 4679999999999999999999999999999999999999999999999999999999999987642 247899
Q ss_pred EEEcCchHHHHHHHHHHHHhhccC----CcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEE
Q 015712 220 IVLCTTEESADQGFHMAKFISHCA----RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 295 (402)
Q Consensus 220 Lvl~PtreLa~Qi~~~~~~l~~~~----~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lV 295 (402)
|||+||++|+.|+++.++.+.... ++.+..++|+.....+...+..+++|+|+||+++.+++..+.+.+.++++||
T Consensus 76 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lV 155 (219)
T 1q0u_A 76 VITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILV 155 (219)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEE
T ss_pred EEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEE
Confidence 999999999999999999988766 6788889999877666556666899999999999999998888889999999
Q ss_pred EcCCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhccccccC
Q 015712 296 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNA 359 (402)
Q Consensus 296 lDEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~~~~~ 359 (402)
|||||++.+++|...+..++..++ .++|+++||||+++++.++++.++++|..+.+
T Consensus 156 iDEah~~~~~~~~~~l~~i~~~~~--------~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~ 211 (219)
T 1q0u_A 156 VDEADLMLDMGFITDVDQIAARMP--------KDLQMLVFSATIPEKLKPFLKKYMENPTFVHV 211 (219)
T ss_dssp ECSHHHHHHTTCHHHHHHHHHTSC--------TTCEEEEEESCCCGGGHHHHHHHCSSCEEEEC
T ss_pred EcCchHHhhhChHHHHHHHHHhCC--------cccEEEEEecCCCHHHHHHHHHHcCCCeEEEe
Confidence 999999999999999999998876 37899999999999999999999999987654
No 11
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=2e-38 Score=294.20 Aligned_cols=215 Identities=25% Similarity=0.378 Sum_probs=188.7
Q ss_pred CCCcccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCC
Q 015712 134 GSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMK 213 (402)
Q Consensus 134 ~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~ 213 (402)
...+....+|+++++++.++++|.++||..|+++|.++++.++.|+|+++++|||+|||++|++|++..+...... .
T Consensus 18 ~~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~---~ 94 (236)
T 2pl3_A 18 KINVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWT---S 94 (236)
T ss_dssp TCCGGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCC---G
T ss_pred cCCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhccc---c
Confidence 3445667889999999999999999999999999999999999999999999999999999999999988753211 1
Q ss_pred CCCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcC-CCCCCCee
Q 015712 214 PMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR-NVSCDDIR 292 (402)
Q Consensus 214 ~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~-~~~l~~l~ 292 (402)
..++++||++||++|+.|+++.++.+....++.+..++|+.....+...+ .+++|+|+||++|.+++... .+.+.+++
T Consensus 95 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~ 173 (236)
T 2pl3_A 95 TDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQ 173 (236)
T ss_dssp GGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCC
T ss_pred cCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCccccccc
Confidence 24789999999999999999999999888889999999998877666555 46899999999999998764 57788999
Q ss_pred EEEEcCCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhccccccCC
Q 015712 293 YVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAG 360 (402)
Q Consensus 293 ~lVlDEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~~~~~~ 360 (402)
+|||||||++++++|...+..++..++ .++|+++||||+++.+..+++.++.+|..+.++
T Consensus 174 ~lViDEah~~~~~~~~~~~~~i~~~~~--------~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 174 MLVLDEADRILDMGFADTMNAVIENLP--------KKRQTLLFSATQTKSVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp EEEETTHHHHHHTTTHHHHHHHHHTSC--------TTSEEEEEESSCCHHHHHHHHHSCSSCEEEECC
T ss_pred EEEEeChHHHhcCCcHHHHHHHHHhCC--------CCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 999999999999999999999999886 378999999999999999999999999876543
No 12
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=1.3e-38 Score=292.70 Aligned_cols=209 Identities=24% Similarity=0.350 Sum_probs=181.4
Q ss_pred CcccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCC
Q 015712 136 NAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPM 215 (402)
Q Consensus 136 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~ 215 (402)
.+..+.+|+++++++.+++.|.++||..|+++|.++++.++.|+|+++++|||+|||++|++|+++.+... ..
T Consensus 9 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~-------~~ 81 (224)
T 1qde_A 9 YDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS-------VK 81 (224)
T ss_dssp CCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT-------CC
T ss_pred cCcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhcc-------CC
Confidence 34557789999999999999999999999999999999999999999999999999999999999987642 25
Q ss_pred CCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEE
Q 015712 216 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 295 (402)
Q Consensus 216 ~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lV 295 (402)
++++||++||++|+.|+++.+..+....++++..++|+.....+...+.. ++|+|+||++|.+++.++.+.+.++++||
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~~~~~~~~~iV 160 (224)
T 1qde_A 82 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRRFRTDKIKMFI 160 (224)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT-CSEEEECHHHHHHHHHTTSSCCTTCCEEE
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhCCcchhhCcEEE
Confidence 78999999999999999999999988889999999999887766655554 89999999999999998888899999999
Q ss_pred EcCCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhccccccCC
Q 015712 296 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAG 360 (402)
Q Consensus 296 lDEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~~~~~~ 360 (402)
|||||++++++|...+..++..++ .++|+++||||+++.+.++++.|+.+|..+.+.
T Consensus 161 iDEah~~~~~~~~~~l~~i~~~~~--------~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~ 217 (224)
T 1qde_A 161 LDEADEMLSSGFKEQIYQIFTLLP--------PTTQVVLLSATMPNDVLEVTTKFMRNPVRILVK 217 (224)
T ss_dssp EETHHHHHHTTCHHHHHHHHHHSC--------TTCEEEEEESSCCHHHHHHHHHHCSSCEEEC--
T ss_pred EcChhHHhhhhhHHHHHHHHHhCC--------ccCeEEEEEeecCHHHHHHHHHHCCCCEEEEec
Confidence 999999999999999999998875 478999999999999999999999999877654
No 13
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=6.4e-38 Score=284.22 Aligned_cols=204 Identities=26% Similarity=0.394 Sum_probs=184.2
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEE
Q 015712 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIV 221 (402)
Q Consensus 142 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lv 221 (402)
+|+++++++.+++.|.++||..|+++|.++++.+++|+|+++++|||+|||++|++|++..+..... ...++++||
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~----~~~~~~~li 77 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQE----RGRKPRALV 77 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCC----TTCCCSEEE
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccc----cCCCCcEEE
Confidence 6999999999999999999999999999999999999999999999999999999999998864211 235789999
Q ss_pred EcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCc
Q 015712 222 LCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 301 (402)
Q Consensus 222 l~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~ 301 (402)
++||++|+.|+++.+..+... +++..++|+.....+...+..+++|+|+||+++.+++..+.+.+.++++||+||||+
T Consensus 78 l~P~~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~ 155 (207)
T 2gxq_A 78 LTPTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADE 155 (207)
T ss_dssp ECSSHHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHH
T ss_pred EECCHHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhH
Confidence 999999999999999988653 778889999888777777777899999999999999998888899999999999999
Q ss_pred cccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhccccccC
Q 015712 302 LFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNA 359 (402)
Q Consensus 302 ~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~~~~~ 359 (402)
+++.+|...+..++..++ .++|+++||||+++.+.++++.|+.+|..+.+
T Consensus 156 ~~~~~~~~~~~~i~~~~~--------~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 156 MLSMGFEEEVEALLSATP--------PSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp HHHTTCHHHHHHHHHTSC--------TTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred hhccchHHHHHHHHHhCC--------ccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 999999999999988775 47899999999999999999999999987654
No 14
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=7.7e-38 Score=295.58 Aligned_cols=205 Identities=26% Similarity=0.407 Sum_probs=181.7
Q ss_pred ccccccCC--CCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCC
Q 015712 140 VSSFQELG--LKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHP 217 (402)
Q Consensus 140 ~~~f~~l~--l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~ 217 (402)
..+|.+++ +++.++++|.++||..|+++|.++++.++.|+|++++||||||||++|++|+++.+...... ...++
T Consensus 51 ~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~---~~~~~ 127 (262)
T 3ly5_A 51 DTSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFM---PRNGT 127 (262)
T ss_dssp GGCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCC---GGGCC
T ss_pred cCChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhcccc---ccCCc
Confidence 45688888 99999999999999999999999999999999999999999999999999999988763211 12477
Q ss_pred eEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcC-CCCCCCeeEEEE
Q 015712 218 RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR-NVSCDDIRYVVL 296 (402)
Q Consensus 218 ~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~-~~~l~~l~~lVl 296 (402)
++|||+||++||.|+++.++.+....++.+..++|+.....+...+..+++|+||||+++.+++... .+.+.++++|||
T Consensus 128 ~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lVi 207 (262)
T 3ly5_A 128 GVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVI 207 (262)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEE
Confidence 8999999999999999999999888889999999999988888878778999999999999998765 477899999999
Q ss_pred cCCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhccc
Q 015712 297 DEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLE 355 (402)
Q Consensus 297 DEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~ 355 (402)
||||+|++++|...+..|+..++ ..+|+++||||+++.+..+++.+++++.
T Consensus 208 DEah~l~~~~~~~~l~~i~~~~~--------~~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 208 DEADRILDVGFEEELKQIIKLLP--------TRRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp CSHHHHHHTTCHHHHHHHHHHSC--------SSSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred cChHHHhhhhHHHHHHHHHHhCC--------CCCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 99999999999999999999886 3789999999999999999999887653
No 15
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.2e-38 Score=293.58 Aligned_cols=214 Identities=21% Similarity=0.374 Sum_probs=182.9
Q ss_pred CCcccccccccC----CCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccC
Q 015712 135 SNAEVVSSFQEL----GLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALL 210 (402)
Q Consensus 135 ~~~~~~~~f~~l----~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~ 210 (402)
..+.++.+|+++ ++++.++++|.++||..|+++|.++|+.++.|+|++++||||+|||++|++|++..+...
T Consensus 19 ~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~---- 94 (245)
T 3dkp_A 19 DLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQP---- 94 (245)
T ss_dssp SCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSC----
T ss_pred CCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhc----
Confidence 345567788887 899999999999999999999999999999999999999999999999999999988642
Q ss_pred CCCCCCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHH-HHhcCCccEEEeCchhhHHHhhcC--CCC
Q 015712 211 PMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE-DVSNAPIGMLIATPSEVLQHIEDR--NVS 287 (402)
Q Consensus 211 ~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~-~~l~~~~~IlV~TP~~l~~~l~~~--~~~ 287 (402)
...++++|||+||++|+.|+++.+..+....++++..++|+....... .....+++|+|+||++|.+++... .+.
T Consensus 95 --~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~ 172 (245)
T 3dkp_A 95 --ANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGID 172 (245)
T ss_dssp --CSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCC
T ss_pred --ccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcc
Confidence 225779999999999999999999999888888888887765433221 223457899999999999999876 577
Q ss_pred CCCeeEEEEcCCCcccc---CCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhccccccCCc
Q 015712 288 CDDIRYVVLDEADTLFD---RGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAGK 361 (402)
Q Consensus 288 l~~l~~lVlDEad~~l~---~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~~~~~~~ 361 (402)
+.++++|||||||+|++ .+|...+..++..+.. .+.|+++||||+++++.++++.++++|..+.++.
T Consensus 173 ~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~-------~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~ 242 (245)
T 3dkp_A 173 LASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTS-------HKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGA 242 (245)
T ss_dssp CTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCC-------TTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC
T ss_pred cccCcEEEEeChHHhcccccccHHHHHHHHHHhcCC-------CCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCC
Confidence 89999999999999998 4688888888776542 4789999999999999999999999998887654
No 16
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=2.8e-37 Score=283.26 Aligned_cols=204 Identities=23% Similarity=0.337 Sum_probs=181.4
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeE
Q 015712 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRA 219 (402)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 219 (402)
..+|++++|++.++++|.++||..|+++|.++++.+++|+|+++++|||+|||++|++|++..+... ..++++
T Consensus 13 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~-------~~~~~~ 85 (220)
T 1t6n_A 13 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV-------TGQVSV 85 (220)
T ss_dssp -CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC-------TTCCCE
T ss_pred CCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhcc-------CCCEEE
Confidence 4579999999999999999999999999999999999999999999999999999999999877542 246699
Q ss_pred EEEcCchHHHHHHHHHHHHhhccC-CcceeeccCCCChHHHHHHhc-CCccEEEeCchhhHHHhhcCCCCCCCeeEEEEc
Q 015712 220 IVLCTTEESADQGFHMAKFISHCA-RLDSSMENGGVSSKALEDVSN-APIGMLIATPSEVLQHIEDRNVSCDDIRYVVLD 297 (402)
Q Consensus 220 Lvl~PtreLa~Qi~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~l~-~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlD 297 (402)
||++||++|+.|+++.++.+.... ++++..++|+.....+...+. ..++|+|+||+++.+++..+.+.+.++++||+|
T Consensus 86 lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViD 165 (220)
T 1t6n_A 86 LVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILD 165 (220)
T ss_dssp EEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEE
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEc
Confidence 999999999999999999987766 789999999998777666554 357999999999999999888889999999999
Q ss_pred CCCccccC-CCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhcccccc
Q 015712 298 EADTLFDR-GFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDN 358 (402)
Q Consensus 298 Ead~~l~~-gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~~~~ 358 (402)
|||++++. +|...+..++..++ .++|+++||||+++.+.++++.|+++|..+.
T Consensus 166 Eah~~~~~~~~~~~~~~i~~~~~--------~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 166 ECDKMLEQLDMRRDVQEIFRMTP--------HEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp SHHHHHSSHHHHHHHHHHHHTSC--------SSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred CHHHHhcccCcHHHHHHHHHhCC--------CcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 99999874 78888888887665 4789999999999999999999999987653
No 17
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=7.5e-36 Score=298.14 Aligned_cols=253 Identities=21% Similarity=0.310 Sum_probs=206.1
Q ss_pred CcccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhccc------
Q 015712 136 NAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEAL------ 209 (402)
Q Consensus 136 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~------ 209 (402)
.+.++.+|++++|++.++++|..+||..||++|.++|+.++.|+|++++||||+|||++|++|+++.+......
T Consensus 10 ~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~ 89 (417)
T 2i4i_A 10 CPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAM 89 (417)
T ss_dssp CCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred CCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhcc
Confidence 45667889999999999999999999999999999999999999999999999999999999999988754210
Q ss_pred -----CCCCCCCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcC
Q 015712 210 -----LPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR 284 (402)
Q Consensus 210 -----~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~ 284 (402)
.+....++++|||+||++|+.|+++.+..+....+++++.++|+.....+...+..+++|+|+||++|.+++..+
T Consensus 90 ~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~ 169 (417)
T 2i4i_A 90 KENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERG 169 (417)
T ss_dssp HHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTT
T ss_pred ccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcC
Confidence 011223578999999999999999999999888899999999999998888888889999999999999999988
Q ss_pred CCCCCCeeEEEEcCCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhccccccCCceee
Q 015712 285 NVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAGKVTA 364 (402)
Q Consensus 285 ~~~l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~~~~~~~~~~ 364 (402)
.+.+.++++|||||||++++++|...+..++..... ......|+++||||++..+..++..++.++..+.++....
T Consensus 170 ~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~----~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (417)
T 2i4i_A 170 KIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTM----PPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGS 245 (417)
T ss_dssp SBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSC----CCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----
T ss_pred CcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccC----CCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 888999999999999999999999999998874321 0113689999999999999999999999887665554444
Q ss_pred eeeecccceEEeecccHHHHHHHHHHHHhhc
Q 015712 365 MLLEMDQAEVFDLTESQDALKKKVVEAMDSL 395 (402)
Q Consensus 365 ~~~~v~q~~~~~~~e~~~~~~~~l~~~l~~l 395 (402)
....+.+.+.+.. ...+...+.+++...
T Consensus 246 ~~~~i~~~~~~~~---~~~~~~~l~~~l~~~ 273 (417)
T 2i4i_A 246 TSENITQKVVWVE---ESDKRSFLLDLLNAT 273 (417)
T ss_dssp CCSSEEEEEEECC---GGGHHHHHHHHHHTC
T ss_pred CccCceEEEEEec---cHhHHHHHHHHHHhc
Confidence 4444444443322 233445555555543
No 18
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=8.3e-36 Score=297.62 Aligned_cols=239 Identities=23% Similarity=0.313 Sum_probs=202.0
Q ss_pred ccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCC
Q 015712 138 EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHP 217 (402)
Q Consensus 138 ~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~ 217 (402)
....+|++++|++.++++|..+||..|+++|.++|+.++.|+|+++++|||+|||++|++|+++.+... ..++
T Consensus 34 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-------~~~~ 106 (410)
T 2j0s_A 34 DVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ-------VRET 106 (410)
T ss_dssp CCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT-------SCSC
T ss_pred cCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhc-------cCCc
Confidence 346689999999999999999999999999999999999999999999999999999999999877532 2577
Q ss_pred eEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEc
Q 015712 218 RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLD 297 (402)
Q Consensus 218 ~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlD 297 (402)
++|||+||++|+.|+++.+..++...++.+..++|+.....+...+..+++|+|+||++|.+++..+.+.+.++++||||
T Consensus 107 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViD 186 (410)
T 2j0s_A 107 QALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLD 186 (410)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEE
T ss_pred eEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEc
Confidence 99999999999999999999999888999999999999888888888889999999999999999888889999999999
Q ss_pred CCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhccccccCCceeeeeeecccceEEee
Q 015712 298 EADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAGKVTAMLLEMDQAEVFDL 377 (402)
Q Consensus 298 Ead~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~~~~~~~~~~~~~~v~q~~~~~~ 377 (402)
|||+|++++|...+..++..++ .+.|+++||||++..+..++..++.+|..+.+.........+.+.+...
T Consensus 187 Eah~~~~~~~~~~~~~i~~~~~--------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 257 (410)
T 2j0s_A 187 EADEMLNKGFKEQIYDVYRYLP--------PATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAV- 257 (410)
T ss_dssp THHHHTSTTTHHHHHHHHTTSC--------TTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEE-
T ss_pred cHHHHHhhhhHHHHHHHHHhCc--------cCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEe-
Confidence 9999999999999999888775 4789999999999999988888998887765544443333444443332
Q ss_pred cccHHHHHHHHHHHHh
Q 015712 378 TESQDALKKKVVEAMD 393 (402)
Q Consensus 378 ~e~~~~~~~~l~~~l~ 393 (402)
...+.+...|.+++.
T Consensus 258 -~~~~~k~~~l~~~~~ 272 (410)
T 2j0s_A 258 -EREEWKFDTLCDLYD 272 (410)
T ss_dssp -SSTTHHHHHHHHHHH
T ss_pred -CcHHhHHHHHHHHHH
Confidence 222334444444444
No 19
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=2.4e-34 Score=286.72 Aligned_cols=243 Identities=23% Similarity=0.320 Sum_probs=204.3
Q ss_pred CCcccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCC
Q 015712 135 SNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKP 214 (402)
Q Consensus 135 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~ 214 (402)
.......+|+++++++.+++.|.++||..|+++|.++|+.++.|+|+++++|||+|||++|++|+++.+... .
T Consensus 34 ~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~-------~ 106 (414)
T 3eiq_A 34 NWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD-------L 106 (414)
T ss_dssp CCCCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTT-------S
T ss_pred CccchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhc-------C
Confidence 334556789999999999999999999999999999999999999999999999999999999999987652 2
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhc-CCccEEEeCchhhHHHhhcCCCCCCCeeE
Q 015712 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSN-APIGMLIATPSEVLQHIEDRNVSCDDIRY 293 (402)
Q Consensus 215 ~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~-~~~~IlV~TP~~l~~~l~~~~~~l~~l~~ 293 (402)
.+.++||++||++|+.|+++.+..+....++.+..++|+.....+...+. .+++|+|+||++|++++..+.+.+.++++
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~ 186 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKM 186 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCE
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcE
Confidence 47789999999999999999999999888999999999998877766665 67899999999999999988888899999
Q ss_pred EEEcCCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhccccccCCceeeeeeecccce
Q 015712 294 VVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAGKVTAMLLEMDQAE 373 (402)
Q Consensus 294 lVlDEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~~~~~~~~~~~~~~v~q~~ 373 (402)
|||||||++.+++|...+..++..++ .+.|+|+||||++..+..++..++.++..+...........+.+.+
T Consensus 187 vViDEah~~~~~~~~~~~~~~~~~~~--------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (414)
T 3eiq_A 187 FVLDEADEMLSRGFKDQIYDIFQKLN--------SNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFY 258 (414)
T ss_dssp EEECSHHHHHHTTTHHHHHHHHTTSC--------TTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEE
T ss_pred EEEECHHHhhccCcHHHHHHHHHhCC--------CCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEE
Confidence 99999999999999999999988775 4789999999999999999999999987766544444444444443
Q ss_pred EEeecccHHHHHHHHHHHHhh
Q 015712 374 VFDLTESQDALKKKVVEAMDS 394 (402)
Q Consensus 374 ~~~~~e~~~~~~~~l~~~l~~ 394 (402)
... ...+.+...+.+++..
T Consensus 259 ~~~--~~~~~~~~~l~~~~~~ 277 (414)
T 3eiq_A 259 INV--EREEWKLDTLCDLYET 277 (414)
T ss_dssp EEC--SSSTTHHHHHHHHHHS
T ss_pred EEe--ChHHhHHHHHHHHHHh
Confidence 322 2223344455555543
No 20
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=3.4e-34 Score=292.51 Aligned_cols=221 Identities=24% Similarity=0.299 Sum_probs=176.7
Q ss_pred ccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC--CcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCC
Q 015712 138 EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNG--KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPM 215 (402)
Q Consensus 138 ~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g--~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~ 215 (402)
....+|.+++|++.++++|.++||..|+++|.++|+.++.| +|+|++||||||||++|++|++..+... ..
T Consensus 89 ~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~-------~~ 161 (479)
T 3fmp_B 89 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-------NK 161 (479)
T ss_dssp CCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTT-------SC
T ss_pred cCcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhc-------CC
Confidence 34678999999999999999999999999999999999987 9999999999999999999999877542 24
Q ss_pred CCeEEEEcCchHHHHHHHHHHHHhhccC-CcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhc-CCCCCCCeeE
Q 015712 216 HPRAIVLCTTEESADQGFHMAKFISHCA-RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIED-RNVSCDDIRY 293 (402)
Q Consensus 216 ~~~~Lvl~PtreLa~Qi~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~-~~~~l~~l~~ 293 (402)
++++|||+||++|+.|+++.+..+.... ++.+.+..|+...... ...+++|+||||++|++++.+ +.+.+.++++
T Consensus 162 ~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~ 238 (479)
T 3fmp_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKV 238 (479)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCCCCGGGCCE
T ss_pred CCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHHhcCCcCcccCCE
Confidence 6799999999999999999999887754 5777777777654322 234678999999999999976 5667899999
Q ss_pred EEEcCCCcccc-CCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhccccccCCceeeeeeecccc
Q 015712 294 VVLDEADTLFD-RGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAGKVTAMLLEMDQA 372 (402)
Q Consensus 294 lVlDEad~~l~-~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~~~~~~~~~~~~~~v~q~ 372 (402)
|||||||+|++ .+|...+..+++.++ .++|+|+||||++..+..++..++.++..+...........+.|.
T Consensus 239 iViDEah~~~~~~~~~~~~~~i~~~~~--------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 310 (479)
T 3fmp_B 239 FVLDEADVMIATQGHQDQSIRIQRMLP--------RNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQY 310 (479)
T ss_dssp EEECCHHHHHTSTTHHHHHHHHHTTSC--------TTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC------------
T ss_pred EEEECHHHHhhcCCcHHHHHHHHhhCC--------ccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEE
Confidence 99999999987 578888887777665 478999999999999999999999998877666555555555555
Q ss_pred eEEe
Q 015712 373 EVFD 376 (402)
Q Consensus 373 ~~~~ 376 (402)
+.++
T Consensus 311 ~~~~ 314 (479)
T 3fmp_B 311 YVLC 314 (479)
T ss_dssp ----
T ss_pred EEEe
Confidence 4443
No 21
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=3.8e-33 Score=275.94 Aligned_cols=206 Identities=23% Similarity=0.337 Sum_probs=181.2
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEE
Q 015712 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAI 220 (402)
Q Consensus 141 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~L 220 (402)
.+|++++|++.++++|.++||..|+|+|.++++.++.|+|+++++|||+|||++|++|++..+... ..++++|
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-------~~~~~~l 80 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV-------TGQVSVL 80 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCC-------TTCCCEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhccc-------CCCeeEE
Confidence 569999999999999999999999999999999999999999999999999999999999877542 2467999
Q ss_pred EEcCchHHHHHHHHHHHHhhccC-CcceeeccCCCChHHHHHHhc-CCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcC
Q 015712 221 VLCTTEESADQGFHMAKFISHCA-RLDSSMENGGVSSKALEDVSN-APIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 298 (402)
Q Consensus 221 vl~PtreLa~Qi~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~l~-~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDE 298 (402)
|++||++|+.|+++.+..+.... ++++..++|+.....+...+. ..++|+|+||++|..++....+.+.++++|||||
T Consensus 81 il~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDE 160 (391)
T 1xti_A 81 VMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDE 160 (391)
T ss_dssp EECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECS
T ss_pred EECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeC
Confidence 99999999999999999987765 789999999998777666554 3479999999999999988888899999999999
Q ss_pred CCccccC-CCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhccccccCCc
Q 015712 299 ADTLFDR-GFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAGK 361 (402)
Q Consensus 299 ad~~l~~-gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~~~~~~~ 361 (402)
||++.++ ++...+..++..++ ...|++++|||++..+..++..++.+|..+....
T Consensus 161 aH~~~~~~~~~~~~~~~~~~~~--------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 216 (391)
T 1xti_A 161 CDKMLEQLDMRRDVQEIFRMTP--------HEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDD 216 (391)
T ss_dssp HHHHTSSHHHHHHHHHHHHTSC--------SSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCC
T ss_pred HHHHhhccchHHHHHHHHhhCC--------CCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecC
Confidence 9999875 67777887777664 4789999999999999999999999887665443
No 22
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=1.4e-33 Score=279.07 Aligned_cols=207 Identities=25% Similarity=0.355 Sum_probs=186.2
Q ss_pred ccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCC
Q 015712 138 EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHP 217 (402)
Q Consensus 138 ~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~ 217 (402)
....+|++++|++.+++.|..+||..|+++|.++++.++.|+|+++++|||+|||++|++|++..+... ..++
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~-------~~~~ 90 (394)
T 1fuu_A 18 KVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS-------VKAP 90 (394)
T ss_dssp CCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTT-------CCSC
T ss_pred cccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhcc-------CCCC
Confidence 345679999999999999999999999999999999999999999999999999999999999887642 2577
Q ss_pred eEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEc
Q 015712 218 RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLD 297 (402)
Q Consensus 218 ~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlD 297 (402)
++||++||++|+.|+++.+..+....++++..++|+.........+. +++|+|+||++|.+++..+.+.+.++++||+|
T Consensus 91 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiD 169 (394)
T 1fuu_A 91 QALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILD 169 (394)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCEEEEE
T ss_pred CEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcEEEEE
Confidence 99999999999999999999998888999999999998776655554 57999999999999999888888999999999
Q ss_pred CCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhccccccCC
Q 015712 298 EADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAG 360 (402)
Q Consensus 298 Ead~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~~~~~~ 360 (402)
|||++.+++|...+..++..++ ...|++++|||+++.+......++.+|..+...
T Consensus 170 Eah~~~~~~~~~~~~~~~~~~~--------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 224 (394)
T 1fuu_A 170 EADEMLSSGFKEQIYQIFTLLP--------PTTQVVLLSATMPNDVLEVTTKFMRNPVRILVK 224 (394)
T ss_dssp THHHHHHTTCHHHHHHHHHHSC--------TTCEEEEECSSCCHHHHHHHHHHCCSCEEEEEC
T ss_pred ChHHhhCCCcHHHHHHHHHhCC--------CCceEEEEEEecCHHHHHHHHHhcCCCeEEEec
Confidence 9999999999999999998876 478999999999999999999999888766443
No 23
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=7.1e-33 Score=275.26 Aligned_cols=204 Identities=22% Similarity=0.354 Sum_probs=183.3
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCe
Q 015712 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPR 218 (402)
Q Consensus 139 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 218 (402)
...+|++++|++.++++|.++||..|+++|.++++.++.|+++++++|||+|||++|++|++..+... ..+.+
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~-------~~~~~ 91 (400)
T 1s2m_A 19 KGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK-------LNKIQ 91 (400)
T ss_dssp --CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTT-------SCSCC
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhc-------cCCcc
Confidence 45679999999999999999999999999999999999999999999999999999999999887542 24678
Q ss_pred EEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcC
Q 015712 219 AIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 298 (402)
Q Consensus 219 ~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDE 298 (402)
+||++||++|+.|+++.+..+....++++..++|+.....+...+..+++|+|+||++|.+++......+.++++|||||
T Consensus 92 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE 171 (400)
T 1s2m_A 92 ALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDE 171 (400)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEES
T ss_pred EEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeC
Confidence 99999999999999999999988889999999999998887777778899999999999999988878899999999999
Q ss_pred CCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhccccc
Q 015712 299 ADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERD 357 (402)
Q Consensus 299 ad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~~~ 357 (402)
||++.+.+|...+..++..++ ...|+++||||++..+...+..++.++..+
T Consensus 172 aH~~~~~~~~~~~~~i~~~~~--------~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~ 222 (400)
T 1s2m_A 172 ADKMLSRDFKTIIEQILSFLP--------PTHQSLLFSATFPLTVKEFMVKHLHKPYEI 222 (400)
T ss_dssp HHHHSSHHHHHHHHHHHTTSC--------SSCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred chHhhhhchHHHHHHHHHhCC--------cCceEEEEEecCCHHHHHHHHHHcCCCeEE
Confidence 999988888888888877664 478999999999999999999988887654
No 24
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=6e-33 Score=276.20 Aligned_cols=240 Identities=23% Similarity=0.284 Sum_probs=194.1
Q ss_pred CCCcccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC--CcEEEEcCCCCChhhHhHHHHHHHHHhhcccCC
Q 015712 134 GSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNG--KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLP 211 (402)
Q Consensus 134 ~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g--~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~ 211 (402)
........+|+++++++.++++|.++||..|+++|.++|+.++.| ++++++||||+|||++|++|++..+...
T Consensus 18 ~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~----- 92 (412)
T 3fht_A 18 NSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA----- 92 (412)
T ss_dssp TSTTCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT-----
T ss_pred CCCccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhc-----
Confidence 334456788999999999999999999999999999999999987 9999999999999999999999987652
Q ss_pred CCCCCCeEEEEcCchHHHHHHHHHHHHhhccC-CcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhc-CCCCCC
Q 015712 212 MKPMHPRAIVLCTTEESADQGFHMAKFISHCA-RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIED-RNVSCD 289 (402)
Q Consensus 212 ~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~-~~~~l~ 289 (402)
..++++|||+||++|+.|+++.+..+.... ++.+....|+...... ...+++|+|+||++|.+++.+ +.+.+.
T Consensus 93 --~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~~~~~~~ 167 (412)
T 3fht_A 93 --NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPK 167 (412)
T ss_dssp --SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCSSCGG
T ss_pred --CCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhcCCcChh
Confidence 256799999999999999999999987764 6778777777664332 244679999999999999966 566788
Q ss_pred CeeEEEEcCCCcccc-CCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhccccccCCceeeeeee
Q 015712 290 DIRYVVLDEADTLFD-RGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAGKVTAMLLE 368 (402)
Q Consensus 290 ~l~~lVlDEad~~l~-~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~~~~~~~~~~~~~~ 368 (402)
++++|||||||++++ .++...+..++..++ .++|+++||||+++.+..++..++.++..+...........
T Consensus 168 ~~~~iViDEah~~~~~~~~~~~~~~~~~~~~--------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (412)
T 3fht_A 168 KIKVFVLDEADVMIATQGHQDQSIRIQRMLP--------RNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDT 239 (412)
T ss_dssp GCCEEEEETHHHHHSTTTTHHHHHHHHHTSC--------TTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTT
T ss_pred hCcEEEEeCHHHHhhcCCcHHHHHHHHhhCC--------CCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccC
Confidence 999999999999987 578888888887775 47899999999999999999999999887766554444444
Q ss_pred cccceEEeecccHHHHHHHHHHHHh
Q 015712 369 MDQAEVFDLTESQDALKKKVVEAMD 393 (402)
Q Consensus 369 v~q~~~~~~~e~~~~~~~~l~~~l~ 393 (402)
+.+.+... ...+.+...+.+++.
T Consensus 240 ~~~~~~~~--~~~~~~~~~l~~~~~ 262 (412)
T 3fht_A 240 IKQYYVLC--SSRDEKFQALCNLYG 262 (412)
T ss_dssp EEEEEEEC--SSHHHHHHHHHHHHH
T ss_pred ceEEEEEc--CChHHHHHHHHHHHh
Confidence 44443332 233445555555554
No 25
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=2.2e-32 Score=270.12 Aligned_cols=203 Identities=25% Similarity=0.413 Sum_probs=177.7
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC--CcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCC
Q 015712 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNG--KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMH 216 (402)
Q Consensus 139 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g--~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~ 216 (402)
...+|++++|++.++++|.++||..|+++|.++++.++.| ++++++||||+|||++|++|++..+... ..+
T Consensus 3 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~-------~~~ 75 (395)
T 3pey_A 3 MAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPE-------DAS 75 (395)
T ss_dssp -CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT-------CCS
T ss_pred cccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccC-------CCC
Confidence 3578999999999999999999999999999999999998 9999999999999999999999887642 257
Q ss_pred CeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEE
Q 015712 217 PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVL 296 (402)
Q Consensus 217 ~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVl 296 (402)
+++|||+||++|+.|+++.++.+....++.+...+|+..... ...+++|+|+||++|.+++.++.+.+.++++|||
T Consensus 76 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIi 151 (395)
T 3pey_A 76 PQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKN----KQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVL 151 (395)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTT----SCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEE
T ss_pred ccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhh----ccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEE
Confidence 799999999999999999999998888888888887765332 2336899999999999999888888999999999
Q ss_pred cCCCcccc-CCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhccccccCC
Q 015712 297 DEADTLFD-RGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAG 360 (402)
Q Consensus 297 DEad~~l~-~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~~~~~~ 360 (402)
||||++.+ .++...+..++..++ .+.|+++||||+++.+..++..++.++..+...
T Consensus 152 DEah~~~~~~~~~~~~~~~~~~~~--------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 208 (395)
T 3pey_A 152 DEADNMLDQQGLGDQCIRVKRFLP--------KDTQLVLFSATFADAVRQYAKKIVPNANTLELQ 208 (395)
T ss_dssp ETHHHHHHSTTHHHHHHHHHHTSC--------TTCEEEEEESCCCHHHHHHHHHHSCSCEEECCC
T ss_pred EChhhhcCccccHHHHHHHHHhCC--------CCcEEEEEEecCCHHHHHHHHHhCCCCeEEEcc
Confidence 99999988 578888888877765 478999999999999999999999887665443
No 26
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1.3e-32 Score=287.61 Aligned_cols=206 Identities=24% Similarity=0.330 Sum_probs=176.3
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHH--cCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCc
Q 015712 148 LKAEMIKAVEKMGLFVPSEIQCVGIPAVL--NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTT 225 (402)
Q Consensus 148 l~~~l~~~l~~~g~~~pt~iQ~~~i~~il--~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~Pt 225 (402)
|+++++++|..+||..|+|+|.++|+.++ .|+|+|++||||+|||++|++|+++.+...... ...++++|||+||
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~---~~~~~~~lvl~Pt 104 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD---SQYMVKAVIVAPT 104 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS---STTSCCEEEECSS
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhcccc---ccCCCeEEEEcch
Confidence 99999999999999999999999999999 789999999999999999999999998875321 2346799999999
Q ss_pred hHHHHHHHHHHHHhhcc----CCcceeeccCCCChHHHHHHhc-CCccEEEeCchhhHHHhhcC-CCCCCCeeEEEEcCC
Q 015712 226 EESADQGFHMAKFISHC----ARLDSSMENGGVSSKALEDVSN-APIGMLIATPSEVLQHIEDR-NVSCDDIRYVVLDEA 299 (402)
Q Consensus 226 reLa~Qi~~~~~~l~~~----~~~~v~~~~gg~~~~~~~~~l~-~~~~IlV~TP~~l~~~l~~~-~~~l~~l~~lVlDEa 299 (402)
++||.|++..+..+... ..+.+..++|+.....+...+. .+++|+|+||++|++++... ...+..+++||||||
T Consensus 105 r~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEa 184 (579)
T 3sqw_A 105 RDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEA 184 (579)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETH
T ss_pred HHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEECh
Confidence 99999999999987532 3567888899988877766653 47899999999999998764 446788999999999
Q ss_pred CccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhccccc
Q 015712 300 DTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERD 357 (402)
Q Consensus 300 d~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~~~ 357 (402)
|+|++++|...+..|+..++.... ....++|+++||||+++.+..++..++.++..+
T Consensus 185 h~l~~~gf~~~~~~i~~~l~~~~~-~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~ 241 (579)
T 3sqw_A 185 DRLLEIGFRDDLETISGILNEKNS-KSADNIKTLLFSATLDDKVQKLANNIMNKKECL 241 (579)
T ss_dssp HHHTSTTTHHHHHHHHHHHHHHCS-SCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEE
T ss_pred HHhhcCCCHHHHHHHHHHhhhhhc-ccccCceEEEEeccCChHHHHHHHHHcCCCceE
Confidence 999999999999999998875321 122378999999999999999999999887654
No 27
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.98 E-value=6.8e-32 Score=280.74 Aligned_cols=206 Identities=24% Similarity=0.326 Sum_probs=175.1
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHH--cCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCc
Q 015712 148 LKAEMIKAVEKMGLFVPSEIQCVGIPAVL--NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTT 225 (402)
Q Consensus 148 l~~~l~~~l~~~g~~~pt~iQ~~~i~~il--~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~Pt 225 (402)
|++.++++|..+||..|+|+|.++|+.++ .|+|+|++||||||||++|++|+++.+...... ...++++|||+||
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~---~~~~~~~lil~Pt 155 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD---SQYMVKAVIVAPT 155 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS---STTSCCEEEECSS
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhcccc---ccCCeeEEEEcCc
Confidence 99999999999999999999999999999 678999999999999999999999999875321 2246799999999
Q ss_pred hHHHHHHHHHHHHhhcc----CCcceeeccCCCChHHHHHHh-cCCccEEEeCchhhHHHhhcC-CCCCCCeeEEEEcCC
Q 015712 226 EESADQGFHMAKFISHC----ARLDSSMENGGVSSKALEDVS-NAPIGMLIATPSEVLQHIEDR-NVSCDDIRYVVLDEA 299 (402)
Q Consensus 226 reLa~Qi~~~~~~l~~~----~~~~v~~~~gg~~~~~~~~~l-~~~~~IlV~TP~~l~~~l~~~-~~~l~~l~~lVlDEa 299 (402)
++||.|++..++.+... ..+.+..++|+.....+...+ ..+++|+||||++|++++.+. ...+.++++||||||
T Consensus 156 r~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEa 235 (563)
T 3i5x_A 156 RDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEA 235 (563)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETH
T ss_pred HHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCH
Confidence 99999999999887442 245678889998877766655 447899999999999998764 345788999999999
Q ss_pred CccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhccccc
Q 015712 300 DTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERD 357 (402)
Q Consensus 300 d~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~~~ 357 (402)
|+|++++|...+..|+..++.... ....++|+++||||+++.+..++..++.++..+
T Consensus 236 h~l~~~~f~~~~~~i~~~l~~~~~-~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~ 292 (563)
T 3i5x_A 236 DRLLEIGFRDDLETISGILNEKNS-KSADNIKTLLFSATLDDKVQKLANNIMNKKECL 292 (563)
T ss_dssp HHHTSTTTHHHHHHHHHHHHHHCS-SCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEE
T ss_pred HHHhccchHHHHHHHHHhhhhccc-cCccCceEEEEEccCCHHHHHHHHHhcCCCceE
Confidence 999999999999999998875321 223478999999999999999999998886554
No 28
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.98 E-value=2.4e-31 Score=260.10 Aligned_cols=201 Identities=25% Similarity=0.397 Sum_probs=180.7
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC-CcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCe
Q 015712 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNG-KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPR 218 (402)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g-~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 218 (402)
..+|++++|++.++++|.++||..|+++|.++++.++.| +++++.+|||+|||++|++|++..+... .+.+
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~--------~~~~ 76 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN--------NGIE 76 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS--------SSCC
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc--------CCCc
Confidence 357999999999999999999999999999999999988 7999999999999999999999876532 4779
Q ss_pred EEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcC
Q 015712 219 AIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 298 (402)
Q Consensus 219 ~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDE 298 (402)
+||++||++|+.|+++.+..+....++.+..++|+.....+...+. +++|+|+||++|.+++..+.+.+.++++||+||
T Consensus 77 ~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDE 155 (367)
T 1hv8_A 77 AIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDE 155 (367)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEET
T ss_pred EEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEEeC
Confidence 9999999999999999999998888889999999998877666555 589999999999999998888889999999999
Q ss_pred CCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhccccc
Q 015712 299 ADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERD 357 (402)
Q Consensus 299 ad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~~~ 357 (402)
||++.+++|...+..++..++ .+.|++++|||++..+...+..++.++..+
T Consensus 156 ah~~~~~~~~~~~~~~~~~~~--------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~ 206 (367)
T 1hv8_A 156 ADEMLNMGFIKDVEKILNACN--------KDKRILLFSATMPREILNLAKKYMGDYSFI 206 (367)
T ss_dssp HHHHHTTTTHHHHHHHHHTSC--------SSCEEEEECSSCCHHHHHHHHHHCCSEEEE
T ss_pred chHhhhhchHHHHHHHHHhCC--------CCceEEEEeeccCHHHHHHHHHHcCCCeEE
Confidence 999999999999998888765 478999999999999999988888876554
No 29
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.97 E-value=1.4e-30 Score=251.86 Aligned_cols=188 Identities=26% Similarity=0.388 Sum_probs=171.1
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchH
Q 015712 148 LKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEE 227 (402)
Q Consensus 148 l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~Ptre 227 (402)
|++.+.++|.++||..|+++|.++++.+++|+++++++|||+|||++|++|++.. +.++||++||++
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~-------------~~~~liv~P~~~ 67 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL-------------GMKSLVVTPTRE 67 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH-------------TCCEEEECSSHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh-------------cCCEEEEeCCHH
Confidence 5789999999999999999999999999999999999999999999999998762 568999999999
Q ss_pred HHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCCC
Q 015712 228 SADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGF 307 (402)
Q Consensus 228 La~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~gf 307 (402)
|+.|+++.+..+....++++..++|+.....+...+.. ++|+|+||++|.+++....+.+.++++||+||||++.+++|
T Consensus 68 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~ 146 (337)
T 2z0m_A 68 LTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVRN-ADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGF 146 (337)
T ss_dssp HHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHTT-CSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTC
T ss_pred HHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcCC-CCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhcccc
Confidence 99999999999988888999999999988777666654 89999999999999988878889999999999999999999
Q ss_pred HHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhccccc
Q 015712 308 GPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERD 357 (402)
Q Consensus 308 ~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~~~ 357 (402)
...+..++..++ ...+++++|||++..+...+..++.++..+
T Consensus 147 ~~~~~~~~~~~~--------~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 188 (337)
T 2z0m_A 147 IDDIKIILAQTS--------NRKITGLFSATIPEEIRKVVKDFITNYEEI 188 (337)
T ss_dssp HHHHHHHHHHCT--------TCSEEEEEESCCCHHHHHHHHHHSCSCEEE
T ss_pred HHHHHHHHhhCC--------cccEEEEEeCcCCHHHHHHHHHhcCCceee
Confidence 999999988776 378999999999999999999998877554
No 30
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.96 E-value=3.2e-29 Score=258.03 Aligned_cols=234 Identities=19% Similarity=0.274 Sum_probs=162.5
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC--CcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCC
Q 015712 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNG--KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMH 216 (402)
Q Consensus 139 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g--~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~ 216 (402)
....|...++++.+++.+.+.||..|+++|.++|+.++.| ++++++||||||||++|++|++..+... ..+
T Consensus 117 ~l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~-------~~~ 189 (508)
T 3fho_A 117 XXXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDAS-------VPK 189 (508)
T ss_dssp ----------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTT-------CCS
T ss_pred ccccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhC-------CCC
Confidence 3455777889999999999999999999999999999998 9999999999999999999999987652 246
Q ss_pred CeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEE
Q 015712 217 PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVL 296 (402)
Q Consensus 217 ~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVl 296 (402)
+++|||+|+++|+.|+++.++.+....++.+...+++..... ...+++|+|+||++|.+++..+.+.+.++++|||
T Consensus 190 ~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIi 265 (508)
T 3fho_A 190 PQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKG----AKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVL 265 (508)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEE
T ss_pred ceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCccccc----ccCCCCEEEECHHHHHHHHHcCCccccCCCEEEE
Confidence 799999999999999999999998777777766666544322 2346899999999999999988888999999999
Q ss_pred cCCCcccc-CCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhccccccCCceeeeeeecccceEE
Q 015712 297 DEADTLFD-RGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAGKVTAMLLEMDQAEVF 375 (402)
Q Consensus 297 DEad~~l~-~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~~~~~~~~~~~~~~v~q~~~~ 375 (402)
||||++.+ .++...+..++..++ .++|+|++|||+++.+..+...++.++..+...........+.+.+..
T Consensus 266 DEaH~~~~~~~~~~~~~~i~~~~~--------~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 337 (508)
T 3fho_A 266 DEADNMLDQQGLGDQSMRIKHLLP--------RNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMD 337 (508)
T ss_dssp CCHHHHTTC--CHHHHHHHHHHSC--------TTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEE
T ss_pred echhhhcccCCcHHHHHHHHHhCC--------cCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEE
Confidence 99999988 578888988888876 478999999999999999999999988776554444444444444333
Q ss_pred eecccHHHHHHHHHHHHh
Q 015712 376 DLTESQDALKKKVVEAMD 393 (402)
Q Consensus 376 ~~~e~~~~~~~~l~~~l~ 393 (402)
. .........+..++.
T Consensus 338 ~--~~~~~k~~~l~~ll~ 353 (508)
T 3fho_A 338 C--QSEEHKYNVLVELYG 353 (508)
T ss_dssp C----CHHHHHHHHHHHC
T ss_pred C--CchHHHHHHHHHHHH
Confidence 2 222444444545443
No 31
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.9e-30 Score=284.38 Aligned_cols=189 Identities=15% Similarity=0.194 Sum_probs=162.0
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeE
Q 015712 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRA 219 (402)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 219 (402)
...|..+++++.+...+...++..|+++|.++|+++..|+|+|++|+||||||++|++|++..+. .+.++
T Consensus 161 ~~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~----------~g~rv 230 (1108)
T 3l9o_A 161 PPNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK----------NKQRV 230 (1108)
T ss_dssp SSCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHH----------TTCEE
T ss_pred CCCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHh----------cCCeE
Confidence 44688888888888777777777999999999999999999999999999999999999999875 37799
Q ss_pred EEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCC
Q 015712 220 IVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 299 (402)
Q Consensus 220 Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEa 299 (402)
||++||++|+.|+++.+..+.. .+++++|+.+. ..+++|+|+||++|.+++.++...+.++++||||||
T Consensus 231 lvl~PtraLa~Q~~~~l~~~~~----~VglltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEa 299 (1108)
T 3l9o_A 231 IYTSPIKALSNQKYRELLAEFG----DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEV 299 (1108)
T ss_dssp EEEESSHHHHHHHHHHHHHHTS----SEEEECSSCBC-------CCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETG
T ss_pred EEEcCcHHHHHHHHHHHHHHhC----CccEEeCcccc-------CCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhh
Confidence 9999999999999999988654 67778888763 456899999999999999988777889999999999
Q ss_pred CccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCch--hHHHHHHHhhccccc
Q 015712 300 DTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEM--LGEQLSSLMECLERD 357 (402)
Q Consensus 300 d~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~--v~~~~~~~l~~~~~~ 357 (402)
|+|.+++|+..+..++..++ .++|+|+||||+++. +...+..+...+..+
T Consensus 300 H~l~d~~rg~~~e~ii~~l~--------~~~qvl~lSATipn~~e~a~~l~~~~~~~~~v 351 (1108)
T 3l9o_A 300 HYMRDKERGVVWEETIILLP--------DKVRYVFLSATIPNAMEFAEWICKIHSQPCHI 351 (1108)
T ss_dssp GGTTSHHHHHHHHHHHHHSC--------TTSEEEEEECSCSSCHHHHHHHHHHTCSCEEE
T ss_pred hhccccchHHHHHHHHHhcC--------CCceEEEEcCCCCCHHHHHHHHHhhcCCCeEE
Confidence 99999999999999999886 478999999999885 335555555554433
No 32
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.96 E-value=5.6e-29 Score=249.08 Aligned_cols=180 Identities=15% Similarity=0.176 Sum_probs=147.2
Q ss_pred HHHHHHHH-CCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHH
Q 015712 151 EMIKAVEK-MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESA 229 (402)
Q Consensus 151 ~l~~~l~~-~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa 229 (402)
.+.+.+.+ +|| .|+++|.++|+.++.|+|++++||||+|||++|++|++..+. .++++|||+||++|+
T Consensus 9 ~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~----------~~~~~lil~Pt~~L~ 77 (414)
T 3oiy_A 9 DFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR----------KGKKSALVFPTVTLV 77 (414)
T ss_dssp HHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHT----------TTCCEEEEESSHHHH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhc----------CCCEEEEEECCHHHH
Confidence 44556666 477 899999999999999999999999999999999999887662 478999999999999
Q ss_pred HHHHHHHHHhhccCCcceeeccCCCCh---HHHHHHhcCC-ccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCcc---
Q 015712 230 DQGFHMAKFISHCARLDSSMENGGVSS---KALEDVSNAP-IGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL--- 302 (402)
Q Consensus 230 ~Qi~~~~~~l~~~~~~~v~~~~gg~~~---~~~~~~l~~~-~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~--- 302 (402)
.|+++.++.++. .++++..++|+.+. ..+...+..+ ++|+|+||++|.+++.. +.+.++++|||||||++
T Consensus 78 ~q~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~ 154 (414)
T 3oiy_A 78 KQTLERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKA 154 (414)
T ss_dssp HHHHHHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHC
T ss_pred HHHHHHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhc
Confidence 999999999887 78999999999998 4455555555 99999999999998874 66779999999999755
Q ss_pred -------cc-CCCHHH-HHHHHHHhhhh--hc-ccCCCCceEEEEeec-cCchhH
Q 015712 303 -------FD-RGFGPE-ISKILNPLKDS--AL-KSNGQGFQTILVTAA-IAEMLG 344 (402)
Q Consensus 303 -------l~-~gf~~~-i~~il~~l~~~--~~-~~~~~~~q~i~~SAT-l~~~v~ 344 (402)
++ +||... +..++..++.. .. -....+.|+++|||| ++..+.
T Consensus 155 ~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~ 209 (414)
T 3oiy_A 155 SRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIR 209 (414)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSST
T ss_pred cchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhH
Confidence 44 788888 88888887510 00 011147899999999 666655
No 33
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.96 E-value=6.9e-28 Score=251.90 Aligned_cols=190 Identities=17% Similarity=0.266 Sum_probs=157.0
Q ss_pred ccccccCCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCe
Q 015712 140 VSSFQELGLKAEMIKAVEK-MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPR 218 (402)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~-~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 218 (402)
...+.++++++.+.+.|+. +||..|+|+|.++|+.++.|+|+++++|||+|||++|++|++. ..++
T Consensus 20 ~w~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~-------------~~g~ 86 (591)
T 2v1x_A 20 AWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALC-------------SDGF 86 (591)
T ss_dssp GGCCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHT-------------SSSE
T ss_pred ccccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHH-------------cCCc
Confidence 3445678999999999999 6999999999999999999999999999999999999999975 2568
Q ss_pred EEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHH------hcCCccEEEeCchhhH------HHhhcCCC
Q 015712 219 AIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDV------SNAPIGMLIATPSEVL------QHIEDRNV 286 (402)
Q Consensus 219 ~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~------l~~~~~IlV~TP~~l~------~~l~~~~~ 286 (402)
+|||+|+++|+.|+...+..+ ++.+..++|+.....+... ...+++|+|+||++|. +++.. ..
T Consensus 87 ~lVisP~~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~-~~ 161 (591)
T 2v1x_A 87 TLVICPLISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK-AY 161 (591)
T ss_dssp EEEECSCHHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH-HH
T ss_pred EEEEeCHHHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh-hh
Confidence 999999999999999988886 7888999999887665433 2457899999999874 23332 34
Q ss_pred CCCCeeEEEEcCCCccccCC--CHHHHHHH--HHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhccc
Q 015712 287 SCDDIRYVVLDEADTLFDRG--FGPEISKI--LNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLE 355 (402)
Q Consensus 287 ~l~~l~~lVlDEad~~l~~g--f~~~i~~i--l~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~ 355 (402)
.+.++.+|||||||++.++| |.+.+..+ +.... ++.|+|+||||+++.+...+..++..+.
T Consensus 162 ~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~--------~~~~ii~lSAT~~~~v~~~i~~~l~~~~ 226 (591)
T 2v1x_A 162 EARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQF--------PNASLIGLTATATNHVLTDAQKILCIEK 226 (591)
T ss_dssp HTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHC--------TTSEEEEEESSCCHHHHHHHHHHTTCCS
T ss_pred hccCCcEEEEECcccccccccccHHHHHHHHHHHHhC--------CCCcEEEEecCCCHHHHHHHHHHhCCCC
Confidence 56789999999999999988 77776542 22211 3789999999999999888888887653
No 34
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.95 E-value=7.3e-28 Score=257.76 Aligned_cols=189 Identities=20% Similarity=0.248 Sum_probs=163.8
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEE
Q 015712 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPA-VLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAI 220 (402)
Q Consensus 142 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~-il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~L 220 (402)
+|++++|++.+.+.+.+.||..|+++|.++++. +..|++++++||||||||++|.+|++..+.. .+.++|
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~---------~~~~~l 72 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILT---------QGGKAV 72 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHH---------HCSEEE
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHh---------CCCEEE
Confidence 599999999999999999999999999999998 8899999999999999999999999998875 267999
Q ss_pred EEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCC
Q 015712 221 VLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 300 (402)
Q Consensus 221 vl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad 300 (402)
|++|+++||.|+++.+..+.. .+++++.++|+...... ....++|+|+||+++..++.+....++++++|||||||
T Consensus 73 ~i~P~raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H 148 (720)
T 2zj8_A 73 YIVPLKALAEEKFQEFQDWEK-IGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIH 148 (720)
T ss_dssp EECSSGGGHHHHHHHTGGGGG-GTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGG
T ss_pred EEcCcHHHHHHHHHHHHHHHh-cCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCc
Confidence 999999999999998876554 38899999998765432 12358999999999999988876668899999999999
Q ss_pred ccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhc
Q 015712 301 TLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMEC 353 (402)
Q Consensus 301 ~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~ 353 (402)
++.+++++..+..++..++. ++|+|++|||+++. . .+..|+..
T Consensus 149 ~l~~~~r~~~~~~ll~~l~~--------~~~ii~lSATl~n~-~-~~~~~l~~ 191 (720)
T 2zj8_A 149 LIGSRDRGATLEVILAHMLG--------KAQIIGLSATIGNP-E-ELAEWLNA 191 (720)
T ss_dssp GGGCTTTHHHHHHHHHHHBT--------TBEEEEEECCCSCH-H-HHHHHTTE
T ss_pred ccCCCcccHHHHHHHHHhhc--------CCeEEEEcCCcCCH-H-HHHHHhCC
Confidence 99988999999999998862 68999999999872 3 34556553
No 35
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.95 E-value=1.4e-27 Score=255.33 Aligned_cols=190 Identities=19% Similarity=0.268 Sum_probs=163.5
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCe
Q 015712 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPA-VLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPR 218 (402)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~-il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 218 (402)
..+|++++|++++.+.+...||..|+++|.++++. +..|++++++||||||||++|.+++++.+.. .+.+
T Consensus 7 ~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~---------~~~~ 77 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK---------NGGK 77 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH---------SCSE
T ss_pred cCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH---------CCCe
Confidence 35799999999999999999999999999999999 7889999999999999999999999998765 3679
Q ss_pred EEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcC
Q 015712 219 AIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 298 (402)
Q Consensus 219 ~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDE 298 (402)
+||++|+++||.|++..++.+.. .+++++.++|+...... .+ .+++|+|+||+++..++.+....++++++|||||
T Consensus 78 il~i~P~r~La~q~~~~~~~~~~-~g~~v~~~~G~~~~~~~--~~-~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE 153 (715)
T 2va8_A 78 AIYVTPLRALTNEKYLTFKDWEL-IGFKVAMTSGDYDTDDA--WL-KNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDE 153 (715)
T ss_dssp EEEECSCHHHHHHHHHHHGGGGG-GTCCEEECCSCSSSCCG--GG-GGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECS
T ss_pred EEEEeCcHHHHHHHHHHHHHhhc-CCCEEEEEeCCCCCchh--hc-CCCCEEEEcHHHHHHHHhCChhHhhccCEEEEec
Confidence 99999999999999998865543 48899999998765442 22 2689999999999999988766688999999999
Q ss_pred CCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhc
Q 015712 299 ADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMEC 353 (402)
Q Consensus 299 ad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~ 353 (402)
||.+.+.+++..+..++..++ +.|+|+||||+++ ... +..|+..
T Consensus 154 ~H~l~~~~~~~~l~~i~~~~~---------~~~ii~lSATl~n-~~~-~~~~l~~ 197 (715)
T 2va8_A 154 LHYLNDPERGPVVESVTIRAK---------RRNLLALSATISN-YKQ-IAKWLGA 197 (715)
T ss_dssp GGGGGCTTTHHHHHHHHHHHH---------TSEEEEEESCCTT-HHH-HHHHHTC
T ss_pred hhhcCCcccchHHHHHHHhcc---------cCcEEEEcCCCCC-HHH-HHHHhCC
Confidence 999988889999999998886 6899999999986 233 4455554
No 36
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.95 E-value=6.7e-28 Score=257.34 Aligned_cols=192 Identities=15% Similarity=0.230 Sum_probs=160.9
Q ss_pred ccccCC--CCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeE
Q 015712 142 SFQELG--LKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRA 219 (402)
Q Consensus 142 ~f~~l~--l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~ 219 (402)
+|++++ |++.+.+.+.+.||..|+++|.++++.+..|++++++||||||||++|.+|++..+.. +.++
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~----------~~~~ 71 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK----------GGKS 71 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT----------TCCE
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh----------CCcE
Confidence 688999 9999999999999999999999999999999999999999999999999999988763 5689
Q ss_pred EEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCC
Q 015712 220 IVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 299 (402)
Q Consensus 220 Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEa 299 (402)
||++|+++||.|+++.++.+.. .+++++.++|+...... ...+++|+|+||+++..++.+....++++++||||||
T Consensus 72 l~i~P~r~La~q~~~~~~~~~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~ 147 (702)
T 2p6r_A 72 LYVVPLRALAGEKYESFKKWEK-IGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEI 147 (702)
T ss_dssp EEEESSHHHHHHHHHHHTTTTT-TTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTG
T ss_pred EEEeCcHHHHHHHHHHHHHHHh-cCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeee
Confidence 9999999999999998865543 47889999988765432 1236899999999999999887666889999999999
Q ss_pred CccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhcc
Q 015712 300 DTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECL 354 (402)
Q Consensus 300 d~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~ 354 (402)
|.+.+++++..+..++..+.... ++.|+|+||||+++ ... +..|+..+
T Consensus 148 H~l~~~~r~~~~~~ll~~l~~~~-----~~~~ii~lSATl~n-~~~-~~~~l~~~ 195 (702)
T 2p6r_A 148 HLLDSEKRGATLEILVTKMRRMN-----KALRVIGLSATAPN-VTE-IAEWLDAD 195 (702)
T ss_dssp GGGGCTTTHHHHHHHHHHHHHHC-----TTCEEEEEECCCTT-HHH-HHHHTTCE
T ss_pred eecCCCCcccHHHHHHHHHHhcC-----cCceEEEECCCcCC-HHH-HHHHhCCC
Confidence 99998889999999998886432 47999999999996 344 44566543
No 37
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.95 E-value=2.7e-27 Score=262.35 Aligned_cols=204 Identities=15% Similarity=0.169 Sum_probs=157.0
Q ss_pred HHHHH-HCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHH
Q 015712 153 IKAVE-KMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQ 231 (402)
Q Consensus 153 ~~~l~-~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Q 231 (402)
.+.+. .+|| .||++|..+|+.++.|+|++++||||||||++|+++++..+. .++++|||+||++||.|
T Consensus 68 ~~~~~~~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~----------~~~~~Lil~PtreLa~Q 136 (1104)
T 4ddu_A 68 RSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR----------KGKKSALVFPTVTLVKQ 136 (1104)
T ss_dssp HHHHHHHSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHT----------TTCCEEEEESSHHHHHH
T ss_pred HHHHHHhcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHh----------cCCeEEEEechHHHHHH
Confidence 34443 4788 799999999999999999999999999999999888887762 47899999999999999
Q ss_pred HHHHHHHhhccCCcceeeccCCCCh---HHHHHHhcCC-ccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCc------
Q 015712 232 GFHMAKFISHCARLDSSMENGGVSS---KALEDVSNAP-IGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT------ 301 (402)
Q Consensus 232 i~~~~~~l~~~~~~~v~~~~gg~~~---~~~~~~l~~~-~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~------ 301 (402)
+++.+..++ ..+++++.++|+.+. ..+...+..+ ++|+||||++|++++.. +.+.++++|||||||+
T Consensus 137 ~~~~l~~l~-~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r 213 (1104)
T 4ddu_A 137 TLERLQKLA-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASR 213 (1104)
T ss_dssp HHHHHHTTS-CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSH
T ss_pred HHHHHHHhh-CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccc
Confidence 999999987 778999999999987 5566666665 99999999999998874 6678999999999964
Q ss_pred ----ccc-CCCHHH-HHHHHHHhhhh--h-cccCCCCceEEEEeec-cCchhHHHHHHHhhccccccCCceeeeeeeccc
Q 015712 302 ----LFD-RGFGPE-ISKILNPLKDS--A-LKSNGQGFQTILVTAA-IAEMLGEQLSSLMECLERDNAGKVTAMLLEMDQ 371 (402)
Q Consensus 302 ----~l~-~gf~~~-i~~il~~l~~~--~-~~~~~~~~q~i~~SAT-l~~~v~~~~~~~l~~~~~~~~~~~~~~~~~v~q 371 (402)
|++ +||..+ +..++..++.. . .-....+.|+++|||| ++..+... +++++..+.+.........+.+
T Consensus 214 ~~Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~---~~~~~l~i~v~~~~~~~~~i~~ 290 (1104)
T 4ddu_A 214 NIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPL---LFRDLLNFTVGRLVSVARNITH 290 (1104)
T ss_dssp HHHHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTH---HHHHHTCCCCCBCCCCCCCEEE
T ss_pred cchhhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHH---HhhcceeEEeccCCCCcCCcee
Confidence 555 888888 89999888610 0 0011147899999999 66665532 3333333433333333344444
Q ss_pred ce
Q 015712 372 AE 373 (402)
Q Consensus 372 ~~ 373 (402)
.+
T Consensus 291 ~~ 292 (1104)
T 4ddu_A 291 VR 292 (1104)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 38
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.94 E-value=4.2e-27 Score=242.97 Aligned_cols=189 Identities=15% Similarity=0.201 Sum_probs=153.1
Q ss_pred ccccccCCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCe
Q 015712 140 VSSFQELGLKAEMIKAVEK-MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPR 218 (402)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~-~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 218 (402)
+.+|++++|++.+.+.|.+ +||..|+++|.++|+.++.|+|+++++|||+|||++|++|++. ....
T Consensus 1 ~~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~-------------~~g~ 67 (523)
T 1oyw_A 1 MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALL-------------LNGL 67 (523)
T ss_dssp CCCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHH-------------SSSE
T ss_pred CCChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHH-------------hCCC
Confidence 3579999999999999999 8999999999999999999999999999999999999999984 2457
Q ss_pred EEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHH----HhcCCccEEEeCchhhHHHhhcCCCCCCCeeEE
Q 015712 219 AIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED----VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYV 294 (402)
Q Consensus 219 ~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~----~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~l 294 (402)
+|||+|+++|+.|+...+..+ ++.+..++|+........ .....++|+|+||++|........+...++.+|
T Consensus 68 ~lvi~P~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~v 143 (523)
T 1oyw_A 68 TVVVSPLISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLL 143 (523)
T ss_dssp EEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEE
T ss_pred EEEECChHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEE
Confidence 999999999999998888775 678888888887655432 234568999999999964322223445789999
Q ss_pred EEcCCCccccCC--CHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHh
Q 015712 295 VLDEADTLFDRG--FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLM 351 (402)
Q Consensus 295 VlDEad~~l~~g--f~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l 351 (402)
||||||++.++| |.+.+..+...... .++.+++++|||+++.+...+..++
T Consensus 144 ViDEaH~i~~~g~~fr~~~~~l~~l~~~------~~~~~~i~lSAT~~~~~~~~i~~~l 196 (523)
T 1oyw_A 144 AVDEAHCISQWGHDFRPEYAALGQLRQR------FPTLPFMALTATADDTTRQDIVRLL 196 (523)
T ss_dssp EESSGGGGCTTSSCCCHHHHGGGGHHHH------CTTSCEEEEESCCCHHHHHHHHHHH
T ss_pred EEeCccccCcCCCccHHHHHHHHHHHHh------CCCCCEEEEeCCCCHHHHHHHHHHh
Confidence 999999999987 77776654322221 1368999999999998776655555
No 39
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.94 E-value=1.5e-26 Score=238.92 Aligned_cols=175 Identities=16% Similarity=0.140 Sum_probs=135.9
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHH
Q 015712 159 MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 238 (402)
Q Consensus 159 ~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~ 238 (402)
++...|+|+|.++++.++.|+|+++++|||+|||++|++|+++.+.... ...++++|||+||++|+.|++..+..
T Consensus 3 ~~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~-----~~~~~~~lil~P~~~L~~q~~~~~~~ 77 (556)
T 4a2p_A 3 METKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP-----AGRKAKVVFLATKVPVYEQQKNVFKH 77 (556)
T ss_dssp -----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC-----SSCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCc-----ccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 3456899999999999999999999999999999999999999887632 12377999999999999999999999
Q ss_pred hhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCC-CCCCeeEEEEcCCCccccCCCHHHHHHHHHH
Q 015712 239 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNV-SCDDIRYVVLDEADTLFDRGFGPEISKILNP 317 (402)
Q Consensus 239 l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~-~l~~l~~lVlDEad~~l~~gf~~~i~~il~~ 317 (402)
+....++++..++|+.....+...+..+++|+|+||++|.+++..+.+ .+.++++|||||||++.++++...+ +..
T Consensus 78 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~---~~~ 154 (556)
T 4a2p_A 78 HFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVL---MTR 154 (556)
T ss_dssp HHGGGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHH---HHH
T ss_pred HhcccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHH---HHH
Confidence 988889999999999987776666666789999999999999988777 7899999999999999887743333 211
Q ss_pred hhhhhcccCCCCceEEEEeeccCc
Q 015712 318 LKDSALKSNGQGFQTILVTAAIAE 341 (402)
Q Consensus 318 l~~~~~~~~~~~~q~i~~SATl~~ 341 (402)
+.........+.+|+|+||||++.
T Consensus 155 ~~~~~~~~~~~~~~~l~lSAT~~~ 178 (556)
T 4a2p_A 155 YLEQKFNSASQLPQILGLTASVGV 178 (556)
T ss_dssp HHHHHHCC---CCEEEEEESCCCC
T ss_pred HHHhhhcccCCCCeEEEEeCCccc
Confidence 111111112346899999999964
No 40
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.94 E-value=1.1e-26 Score=245.68 Aligned_cols=169 Identities=17% Similarity=0.229 Sum_probs=140.3
Q ss_pred HCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHH
Q 015712 158 KMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK 237 (402)
Q Consensus 158 ~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~ 237 (402)
.+|| +||++|..++|.++.|+ |+.++||+|||++|++|++...+ .++.|+||+||++||.|++.++.
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL----------~g~~vlVltptreLA~qd~e~~~ 145 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNAL----------TGKGVHVVTVNEYLASRDAEQMG 145 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHT----------TSSCEEEEESSHHHHHHHHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHH----------cCCCEEEEeCCHHHHHHHHHHHH
Confidence 5799 99999999999999999 99999999999999999985443 36789999999999999999999
Q ss_pred HhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhh-HHHhhcC------CCCCCCeeEEEEcCCCccc-cCC---
Q 015712 238 FISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV-LQHIEDR------NVSCDDIRYVVLDEADTLF-DRG--- 306 (402)
Q Consensus 238 ~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l-~~~l~~~------~~~l~~l~~lVlDEad~~l-~~g--- 306 (402)
.+..++++++++++||.+...+... .+++|+||||++| .+++..+ .+.++.+.++||||||.|| |++
T Consensus 146 ~l~~~lgl~v~~i~gg~~~~~r~~~--~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tp 223 (844)
T 1tf5_A 146 KIFEFLGLTVGLNLNSMSKDEKREA--YAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTP 223 (844)
T ss_dssp HHHHHTTCCEEECCTTSCHHHHHHH--HHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCE
T ss_pred HHHhhcCCeEEEEeCCCCHHHHHHh--cCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccc
Confidence 9999999999999999987654433 4689999999999 6665533 3668899999999999998 765
Q ss_pred ------------CHHHHHHHHHHhhhh-hcccCCCCceEE-----------------EEeeccCc
Q 015712 307 ------------FGPEISKILNPLKDS-ALKSNGQGFQTI-----------------LVTAAIAE 341 (402)
Q Consensus 307 ------------f~~~i~~il~~l~~~-~~~~~~~~~q~i-----------------~~SATl~~ 341 (402)
|..++..|+..++.. .........|++ +||||++.
T Consensus 224 lIisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~ 288 (844)
T 1tf5_A 224 LIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVA 288 (844)
T ss_dssp EEEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHH
T ss_pred hhhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccch
Confidence 678899999888520 000112467888 99999874
No 41
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.94 E-value=4.4e-26 Score=242.62 Aligned_cols=180 Identities=16% Similarity=0.193 Sum_probs=142.0
Q ss_pred HHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHH
Q 015712 153 IKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQG 232 (402)
Q Consensus 153 ~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi 232 (402)
...+..+||..|+++|.++++.++.|+|+|+++|||+|||++|++|+++.+.... ...++++|||+||++|+.|+
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~-----~~~~~~~lvl~Pt~~L~~Q~ 77 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP-----QGQKGKVVFFANQIPVYEQN 77 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSC-----TTCCCCEEEECSSHHHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCc-----cCCCCeEEEEECCHHHHHHH
Confidence 4567789999999999999999999999999999999999999999999887632 12347899999999999999
Q ss_pred HHHHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCC-CCCCeeEEEEcCCCccccCCCHHHH
Q 015712 233 FHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNV-SCDDIRYVVLDEADTLFDRGFGPEI 311 (402)
Q Consensus 233 ~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~-~l~~l~~lVlDEad~~l~~gf~~~i 311 (402)
.+.+..+....++++..++|+.....+...+..+++|+|+||++|.+++..+.+ .+.++++|||||||++.+.. . .
T Consensus 78 ~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~--~-~ 154 (696)
T 2ykg_A 78 KSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQH--P-Y 154 (696)
T ss_dssp HHHHHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTC--H-H
T ss_pred HHHHHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcc--c-H
Confidence 999999988788999999999876655555556789999999999999988766 78899999999999997654 1 2
Q ss_pred HHHH-HHhhhhhcccCCCCceEEEEeeccC
Q 015712 312 SKIL-NPLKDSALKSNGQGFQTILVTAAIA 340 (402)
Q Consensus 312 ~~il-~~l~~~~~~~~~~~~q~i~~SATl~ 340 (402)
..++ ..+...........+|+|+||||+.
T Consensus 155 ~~i~~~~l~~~~~~~~~~~~~il~LTATp~ 184 (696)
T 2ykg_A 155 NMIMFNYLDQKLGGSSGPLPQVIGLTASVG 184 (696)
T ss_dssp HHHHHHHHHHHHTTCCSCCCEEEEEESCCC
T ss_pred HHHHHHHHHHhhcccCCCCCeEEEEeCccc
Confidence 2222 1222111112235789999999997
No 42
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.94 E-value=1e-26 Score=257.47 Aligned_cols=194 Identities=15% Similarity=0.155 Sum_probs=157.0
Q ss_pred HHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHH
Q 015712 157 EKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMA 236 (402)
Q Consensus 157 ~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~ 236 (402)
..+||. | ++|.++|+.++.|+|++++||||||||+ |++|++..+.. .++++|||+||++||.|+++.+
T Consensus 52 ~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~---------~~~~~lil~PtreLa~Q~~~~l 119 (1054)
T 1gku_B 52 KCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL---------KGKRCYVIFPTSLLVIQAAETI 119 (1054)
T ss_dssp TTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT---------TSCCEEEEESCHHHHHHHHHHH
T ss_pred HhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh---------cCCeEEEEeccHHHHHHHHHHH
Confidence 348999 9 9999999999999999999999999998 99999988765 4789999999999999999999
Q ss_pred HHhhccCCc----ceeeccCCCChHHH---HHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCCCHH
Q 015712 237 KFISHCARL----DSSMENGGVSSKAL---EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGP 309 (402)
Q Consensus 237 ~~l~~~~~~----~v~~~~gg~~~~~~---~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~gf~~ 309 (402)
+.++...++ ++++++|+.+...+ ...+.. ++|+||||++|++++.+ +.++++|||||||+|++ ++.
T Consensus 120 ~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~--~~~ 192 (1054)
T 1gku_B 120 RKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILK--ASK 192 (1054)
T ss_dssp HHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHT--STH
T ss_pred HHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhh--ccc
Confidence 999888888 89999999987764 344555 99999999999998875 66999999999999988 578
Q ss_pred HHHHHHHHhhhhhc---ccCCCCceEEEEeeccCchhHHHHHHHhhccccccCCceeeeeeecc
Q 015712 310 EISKILNPLKDSAL---KSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAGKVTAMLLEMD 370 (402)
Q Consensus 310 ~i~~il~~l~~~~~---~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~~~~~~~~~~~~~~v~ 370 (402)
++..++..+..... .......|+++||||++.. ..+...++.++..+.+.........+.
T Consensus 193 ~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~ 255 (1054)
T 1gku_B 193 NVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNVE 255 (1054)
T ss_dssp HHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCEE
T ss_pred cHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCce
Confidence 88888887742100 0112468999999999998 666667777776655544333333333
No 43
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.94 E-value=6.4e-26 Score=233.78 Aligned_cols=171 Identities=15% Similarity=0.136 Sum_probs=141.6
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhcc
Q 015712 163 VPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHC 242 (402)
Q Consensus 163 ~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~ 242 (402)
.|+++|.++++.++.|+|+++++|||+|||++|++|+++.+.... ...++++|||+||++|+.|+++.+..+...
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~-----~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 78 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFP-----CGQKGKVVFFANQIPVYEQQATVFSRYFER 78 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC-----SSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcc-----cCCCCEEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 799999999999999999999999999999999999999887642 123778999999999999999999999888
Q ss_pred CCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCC-CCCCeeEEEEcCCCccccCCCHHHHHHHH-HHhhh
Q 015712 243 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNV-SCDDIRYVVLDEADTLFDRGFGPEISKIL-NPLKD 320 (402)
Q Consensus 243 ~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~-~l~~l~~lVlDEad~~l~~gf~~~i~~il-~~l~~ 320 (402)
.++++..++|+.....+...+..+++|+|+||++|.+++..+.+ .+.++++|||||||++.+.+. ...++ ..+..
T Consensus 79 ~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~---~~~~~~~~~~~ 155 (555)
T 3tbk_A 79 LGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHP---YNQIMFRYLDH 155 (555)
T ss_dssp TTCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCH---HHHHHHHHHHH
T ss_pred CCcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcch---HHHHHHHHHHh
Confidence 89999999999977766666666789999999999999988777 788999999999999987762 22222 22222
Q ss_pred hhcccCCCCceEEEEeeccCc
Q 015712 321 SALKSNGQGFQTILVTAAIAE 341 (402)
Q Consensus 321 ~~~~~~~~~~q~i~~SATl~~ 341 (402)
.........+|+++||||++.
T Consensus 156 ~~~~~~~~~~~~l~lSAT~~~ 176 (555)
T 3tbk_A 156 KLGESRDPLPQVVGLTASVGV 176 (555)
T ss_dssp HTSSCCSCCCEEEEEESCCCC
T ss_pred hhccccCCCCeEEEEecCccc
Confidence 112223357899999999965
No 44
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.93 E-value=9.1e-26 Score=204.86 Aligned_cols=175 Identities=17% Similarity=0.085 Sum_probs=125.3
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHH-HHHHHH
Q 015712 159 MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQ-GFHMAK 237 (402)
Q Consensus 159 ~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Q-i~~~~~ 237 (402)
.+...|+++|.++++.++.|+++++++|||+|||++|+++++..+..... ...+.++||++||++|+.| +.+.+.
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~----~~~~~~~lil~p~~~L~~q~~~~~~~ 104 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKK----ASEPGKVIVLVNKVLLVEQLFRKEFQ 104 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHH----TTCCCCEEEEESSHHHHHHHHHHTHH
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhccc----ccCCCcEEEEECHHHHHHHHHHHHHH
Confidence 34558999999999999999999999999999999999999988765432 1246789999999999999 777787
Q ss_pred HhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCC------CCCCCeeEEEEcCCCccccCCCHHHH
Q 015712 238 FISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRN------VSCDDIRYVVLDEADTLFDRGFGPEI 311 (402)
Q Consensus 238 ~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~------~~l~~l~~lVlDEad~~l~~gf~~~i 311 (402)
.+... ++++..++|+.........+..+++|+|+||++|..++.... +.+.++++|||||||++.+.++...+
T Consensus 105 ~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~ 183 (216)
T 3b6e_A 105 PFLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNI 183 (216)
T ss_dssp HHHTT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHH
T ss_pred HHhcc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHH
Confidence 77654 778888888876554444444468999999999999987643 56788999999999999877766665
Q ss_pred HH-HHH-Hhhhhh----cccCCCCceEEEEeec
Q 015712 312 SK-ILN-PLKDSA----LKSNGQGFQTILVTAA 338 (402)
Q Consensus 312 ~~-il~-~l~~~~----~~~~~~~~q~i~~SAT 338 (402)
.. ++. .+.... .....+.+++|+||||
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 184 MRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 33 222 111110 1122357899999998
No 45
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.93 E-value=2.6e-25 Score=240.46 Aligned_cols=176 Identities=15% Similarity=0.137 Sum_probs=138.4
Q ss_pred HCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHH
Q 015712 158 KMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK 237 (402)
Q Consensus 158 ~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~ 237 (402)
-+|+..|+++|.++++.++.|+|+|+++|||+|||++|++|++..+.... ...++++|||+||++|+.|++..++
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~-----~~~~~~~Lvl~Pt~~L~~Q~~~~~~ 317 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP-----AGRKAKVVFLATKVPVYEQQKNVFK 317 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC-----SSCCCCEEEECSSHHHHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhcc-----ccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999887642 1237799999999999999999999
Q ss_pred HhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCC-CCCCeeEEEEcCCCccccCCCHHHHHHHHH
Q 015712 238 FISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNV-SCDDIRYVVLDEADTLFDRGFGPEISKILN 316 (402)
Q Consensus 238 ~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~-~l~~l~~lVlDEad~~l~~gf~~~i~~il~ 316 (402)
.+....+++++.++|+.....+...+..+++|+|+||++|.+++..+.+ .+.++++|||||||++.+.+. ...++.
T Consensus 318 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~---~~~i~~ 394 (797)
T 4a2q_A 318 HHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP---YNVLMT 394 (797)
T ss_dssp HHHGGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSH---HHHHHH
T ss_pred HhcccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCcc---HHHHHH
Confidence 9988889999999999987776666767899999999999999988777 788999999999999987653 333332
Q ss_pred HhhhhhcccCCCCceEEEEeeccCc
Q 015712 317 PLKDSALKSNGQGFQTILVTAAIAE 341 (402)
Q Consensus 317 ~l~~~~~~~~~~~~q~i~~SATl~~ 341 (402)
.+...........+|+|+||||++.
T Consensus 395 ~~~~~~~~~~~~~~~~l~lSATp~~ 419 (797)
T 4a2q_A 395 RYLEQKFNSASQLPQILGLTASVGV 419 (797)
T ss_dssp HHHHHHHTTCCCCCEEEEEESCCCC
T ss_pred HHHHHhhccCCCCCeEEEEcCCccc
Confidence 2222111122357899999999963
No 46
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.93 E-value=6.1e-26 Score=210.42 Aligned_cols=183 Identities=12% Similarity=0.160 Sum_probs=131.4
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchH
Q 015712 148 LKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEE 227 (402)
Q Consensus 148 l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~Ptre 227 (402)
.++.+.+.+...+...++++|..+++.+..|++++++|+||||||++|.++++..+..... ..+.++|+++|+++
T Consensus 46 ~~~~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~-----~~~~~~l~~~p~~~ 120 (235)
T 3llm_A 46 QDHDLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR-----AAECNIVVTQPRRI 120 (235)
T ss_dssp HCHHHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC-----GGGCEEEEEESSHH
T ss_pred cCHHHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC-----CCceEEEEeccchH
Confidence 3444444444545556899999999999999999999999999999999999887765321 13569999999999
Q ss_pred HHHHHHHHHHHhh-ccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCcc-ccC
Q 015712 228 SADQGFHMAKFIS-HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL-FDR 305 (402)
Q Consensus 228 La~Qi~~~~~~l~-~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~-l~~ 305 (402)
|+.|+.+.+.... ...+..++...... ......+++|+|||||+|++++.. .+.++++|||||||.+ ++.
T Consensus 121 la~q~~~~~~~~~~~~~~~~~g~~~~~~-----~~~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~ 192 (235)
T 3llm_A 121 SAVSVAERVAFERGEEPGKSCGYSVRFE-----SILPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINT 192 (235)
T ss_dssp HHHHHHHHHHHTTTCCTTSSEEEEETTE-----EECCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHH
T ss_pred HHHHHHHHHHHHhccccCceEEEeechh-----hccCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcch
Confidence 9999987765432 22233332211111 011124588999999999999976 4789999999999986 666
Q ss_pred CCH-HHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhcc
Q 015712 306 GFG-PEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECL 354 (402)
Q Consensus 306 gf~-~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~ 354 (402)
+|. ..+..++... ++.|+++||||++.+. +.+.|...|
T Consensus 193 ~~~~~~l~~i~~~~---------~~~~~il~SAT~~~~~--~~~~~~~~p 231 (235)
T 3llm_A 193 DFLLVVLRDVVQAY---------PEVRIVLMSATIDTSM--FCEYFFNCP 231 (235)
T ss_dssp HHHHHHHHHHHHHC---------TTSEEEEEECSSCCHH--HHHHTTSCC
T ss_pred HHHHHHHHHHHhhC---------CCCeEEEEecCCCHHH--HHHHcCCCC
Confidence 665 3555555544 3689999999999876 444444434
No 47
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.92 E-value=2.8e-25 Score=234.60 Aligned_cols=147 Identities=17% Similarity=0.211 Sum_probs=116.6
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHH
Q 015712 159 MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 238 (402)
Q Consensus 159 ~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~ 238 (402)
+|. +||++|..++|.++.|+ |+.++||+|||++|++|++.... .+++|+||+|||+||.|++.++..
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l----------~g~~vlVltPTreLA~Q~~e~~~~ 137 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNAL----------TGKGVHVVTVNDYLAQRDAENNRP 137 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHT----------TSSCCEEEESSHHHHHHHHHHHHH
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHH----------cCCcEEEEcCCHHHHHHHHHHHHH
Confidence 575 99999999999999998 99999999999999999996554 367899999999999999999999
Q ss_pred hhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhh-HHHhhcCC------CCCCCeeEEEEcCCCccc-cCC----
Q 015712 239 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV-LQHIEDRN------VSCDDIRYVVLDEADTLF-DRG---- 306 (402)
Q Consensus 239 l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l-~~~l~~~~------~~l~~l~~lVlDEad~~l-~~g---- 306 (402)
+..++++++++++||.+...+ .+..+++|+||||++| .+++..+. +.++++.++||||||.|+ |.+
T Consensus 138 l~~~lgl~v~~i~GG~~~~~r--~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpL 215 (853)
T 2fsf_A 138 LFEFLGLTVGINLPGMPAPAK--REAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPL 215 (853)
T ss_dssp HHHHTTCCEEECCTTCCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEE
T ss_pred HHHhcCCeEEEEeCCCCHHHH--HHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccc
Confidence 999999999999999886543 3344689999999999 78887542 567899999999999999 543
Q ss_pred -----------CHHHHHHHHHHhhh
Q 015712 307 -----------FGPEISKILNPLKD 320 (402)
Q Consensus 307 -----------f~~~i~~il~~l~~ 320 (402)
|...+..|+..++.
T Consensus 216 IiSg~~~~~~~~y~~i~~iv~~L~~ 240 (853)
T 2fsf_A 216 IISGPAEDSSEMYKRVNKIIPHLIR 240 (853)
T ss_dssp EEEEC--------------------
T ss_pred cccCCCccchhHHHHHHHHHHhchh
Confidence 67888999988863
No 48
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.4e-24 Score=238.72 Aligned_cols=157 Identities=17% Similarity=0.235 Sum_probs=139.0
Q ss_pred HHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHH
Q 015712 156 VEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHM 235 (402)
Q Consensus 156 l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~ 235 (402)
...++|. |+++|.++++.+..|++++++||||+|||++|.++++..+. .+.++||++||++|+.|+++.
T Consensus 80 ~~~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~----------~g~rvL~l~PtkaLa~Q~~~~ 148 (1010)
T 2xgj_A 80 ARTYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK----------NKQRVIYTSPIKALSNQKYRE 148 (1010)
T ss_dssp SCCCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHH----------TTCEEEEEESSHHHHHHHHHH
T ss_pred HHhCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhc----------cCCeEEEECChHHHHHHHHHH
Confidence 3456784 99999999999999999999999999999999999998774 367999999999999999999
Q ss_pred HHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCCCHHHHHHHH
Q 015712 236 AKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 315 (402)
Q Consensus 236 ~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~gf~~~i~~il 315 (402)
+..+.. .+++++|+.... ..++|+|+||++|.+++.++...+.++++|||||||+|.+++++..+..++
T Consensus 149 l~~~~~----~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il 217 (1010)
T 2xgj_A 149 LLAEFG----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETI 217 (1010)
T ss_dssp HHHHHS----CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHH
T ss_pred HHHHhC----CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHH
Confidence 987654 677888887543 357899999999999998887888999999999999999999999999999
Q ss_pred HHhhhhhcccCCCCceEEEEeeccCch
Q 015712 316 NPLKDSALKSNGQGFQTILVTAAIAEM 342 (402)
Q Consensus 316 ~~l~~~~~~~~~~~~q~i~~SATl~~~ 342 (402)
..++ .++|+|+||||+++.
T Consensus 218 ~~l~--------~~~~il~LSATi~n~ 236 (1010)
T 2xgj_A 218 ILLP--------DKVRYVFLSATIPNA 236 (1010)
T ss_dssp HHSC--------TTCEEEEEECCCTTH
T ss_pred HhcC--------CCCeEEEEcCCCCCH
Confidence 8886 478999999999875
No 49
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.92 E-value=8.6e-25 Score=231.25 Aligned_cols=170 Identities=15% Similarity=0.208 Sum_probs=141.8
Q ss_pred HCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHH
Q 015712 158 KMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK 237 (402)
Q Consensus 158 ~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~ 237 (402)
.+|+ +||++|..++|.++.|+ |+.++||+|||++|++|++...+. +..|+||+||++||.|++.++.
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~----------g~~v~VvTpTreLA~Qdae~m~ 173 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA----------GNGVHIVTVNDYLAKRDSEWMG 173 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT----------TSCEEEEESSHHHHHHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh----------CCCeEEEeCCHHHHHHHHHHHH
Confidence 3799 99999999999999998 999999999999999999865542 5689999999999999999999
Q ss_pred HhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhh-HHHhhcC------CCCCCCeeEEEEcCCCccc-cC----
Q 015712 238 FISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV-LQHIEDR------NVSCDDIRYVVLDEADTLF-DR---- 305 (402)
Q Consensus 238 ~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l-~~~l~~~------~~~l~~l~~lVlDEad~~l-~~---- 305 (402)
.+..++++++++++||.+...+... .+++|+||||++| .++|..+ .+.++.+.++||||||.|| |.
T Consensus 174 ~l~~~lGLsv~~i~gg~~~~~r~~~--y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartP 251 (922)
T 1nkt_A 174 RVHRFLGLQVGVILATMTPDERRVA--YNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTP 251 (922)
T ss_dssp HHHHHTTCCEEECCTTCCHHHHHHH--HHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSC
T ss_pred HHHhhcCCeEEEEeCCCCHHHHHHh--cCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccc
Confidence 9999999999999999986544433 3689999999999 7877654 3667899999999999998 43
Q ss_pred -----------CCHHHHHHHHHHhhhhh-cccCCCCceEE-----------------EEeeccCch
Q 015712 306 -----------GFGPEISKILNPLKDSA-LKSNGQGFQTI-----------------LVTAAIAEM 342 (402)
Q Consensus 306 -----------gf~~~i~~il~~l~~~~-~~~~~~~~q~i-----------------~~SATl~~~ 342 (402)
+|...+..|+..++... -.-+....|++ +||||++..
T Consensus 252 LiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l 317 (922)
T 1nkt_A 252 LIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPL 317 (922)
T ss_dssp EEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCH
T ss_pred eeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhH
Confidence 47889999999986200 00112467998 999998863
No 50
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.91 E-value=2.4e-24 Score=236.30 Aligned_cols=178 Identities=15% Similarity=0.136 Sum_probs=135.9
Q ss_pred HHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHH
Q 015712 155 AVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFH 234 (402)
Q Consensus 155 ~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~ 234 (402)
...-.|+..|+++|.++++.++.|+|+|++++||+|||++|++|++..+.... ...+.++|||+||++|+.|++.
T Consensus 240 ~~~l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~-----~~~~~~vLvl~Pt~~L~~Q~~~ 314 (936)
T 4a2w_A 240 PPPVYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP-----AGRKAKVVFLATKVPVYEQQKN 314 (936)
T ss_dssp --------CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCC-----SSCCCCEEEECSSHHHHHHHHH
T ss_pred cccccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhcc-----ccCCCeEEEEeCCHHHHHHHHH
Confidence 33345788999999999999999999999999999999999999998776532 1237789999999999999999
Q ss_pred HHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCC-CCCCeeEEEEcCCCccccCCCHHHHHH
Q 015712 235 MAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNV-SCDDIRYVVLDEADTLFDRGFGPEISK 313 (402)
Q Consensus 235 ~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~-~l~~l~~lVlDEad~~l~~gf~~~i~~ 313 (402)
.++.+....++++..++|+.....+...+..+++|+|+||++|.+++..+.+ .+.++++|||||||++...+. ...
T Consensus 315 ~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~---~~~ 391 (936)
T 4a2w_A 315 VFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP---YNV 391 (936)
T ss_dssp HHHHHHHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCH---HHH
T ss_pred HHHHHhcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCcc---HHH
Confidence 9999988789999999999877665555556789999999999999988766 788999999999999987653 333
Q ss_pred HHHHhhhhhcccCCCCceEEEEeeccC
Q 015712 314 ILNPLKDSALKSNGQGFQTILVTAAIA 340 (402)
Q Consensus 314 il~~l~~~~~~~~~~~~q~i~~SATl~ 340 (402)
++..+...........+|+++||||++
T Consensus 392 i~~~~~~~~~~~~~~~~~~l~LSATp~ 418 (936)
T 4a2w_A 392 LMTRYLEQKFNSASQLPQILGLTASVG 418 (936)
T ss_dssp HHHHHHHHHHTTCSCCCEEEEEESCCC
T ss_pred HHHHHHHHhhccCCCcCeEEEecCCcc
Confidence 333322211112235689999999995
No 51
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.91 E-value=3.1e-24 Score=236.00 Aligned_cols=158 Identities=18% Similarity=0.205 Sum_probs=138.3
Q ss_pred HCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHH
Q 015712 158 KMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK 237 (402)
Q Consensus 158 ~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~ 237 (402)
.++| .|+++|.++|+.++.|+|++++||||+|||++|++++...+. .+.++||++||++|+.|+++.+.
T Consensus 35 ~~~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~----------~g~~vlvl~PtraLa~Q~~~~l~ 103 (997)
T 4a4z_A 35 SWPF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHR----------NMTKTIYTSPIKALSNQKFRDFK 103 (997)
T ss_dssp CCSS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHH----------TTCEEEEEESCGGGHHHHHHHHH
T ss_pred hCCC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHh----------cCCeEEEEeCCHHHHHHHHHHHH
Confidence 4577 589999999999999999999999999999999999887654 37799999999999999999888
Q ss_pred HhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCCCHHHHHHHHHH
Q 015712 238 FISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNP 317 (402)
Q Consensus 238 ~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~gf~~~i~~il~~ 317 (402)
.+.. +++++.++|+... ...++|+|+||++|.+++......+.++++|||||||++.+++|+..+..++..
T Consensus 104 ~~~~--~~~v~~l~G~~~~-------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~ 174 (997)
T 4a4z_A 104 ETFD--DVNIGLITGDVQI-------NPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIM 174 (997)
T ss_dssp TTC----CCEEEECSSCEE-------CTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHH
T ss_pred HHcC--CCeEEEEeCCCcc-------CCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHh
Confidence 7542 6788899998753 345799999999999999887777899999999999999999999999999988
Q ss_pred hhhhhcccCCCCceEEEEeeccCchh
Q 015712 318 LKDSALKSNGQGFQTILVTAAIAEML 343 (402)
Q Consensus 318 l~~~~~~~~~~~~q~i~~SATl~~~v 343 (402)
++ .++|+|++|||+++..
T Consensus 175 l~--------~~v~iIlLSAT~~n~~ 192 (997)
T 4a4z_A 175 LP--------QHVKFILLSATVPNTY 192 (997)
T ss_dssp SC--------TTCEEEEEECCCTTHH
T ss_pred cc--------cCCCEEEEcCCCCChH
Confidence 86 4789999999998754
No 52
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.91 E-value=5.1e-24 Score=244.21 Aligned_cols=186 Identities=13% Similarity=0.149 Sum_probs=145.6
Q ss_pred CCCCCcHHHHHHHHHHH-cCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCC-CCCCCeEEEEcCchHHHHHHHHHHH
Q 015712 160 GLFVPSEIQCVGIPAVL-NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPM-KPMHPRAIVLCTTEESADQGFHMAK 237 (402)
Q Consensus 160 g~~~pt~iQ~~~i~~il-~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~-~~~~~~~Lvl~PtreLa~Qi~~~~~ 237 (402)
||..++++|.+++|.++ .++|++++||||||||+++.++++..+.+....... ...+.++|||+|+++||.|+++.+.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 89999999999999887 578999999999999999999999999864332211 3457899999999999999999998
Q ss_pred HhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCC--CCCCeeEEEEcCCCccccCCCHHHHHHHH
Q 015712 238 FISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNV--SCDDIRYVVLDEADTLFDRGFGPEISKIL 315 (402)
Q Consensus 238 ~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~--~l~~l~~lVlDEad~~l~~gf~~~i~~il 315 (402)
......|++|..++|+.....+. ..+++|+|+||+++..+++++.. .++++++|||||+|.+- ..++..++.++
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~~---~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~-d~RG~~lE~~l 231 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKEE---ISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLH-DDRGPVLEALV 231 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCTT---GGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGG-STTHHHHHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCccc---cCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcC-CccHHHHHHHH
Confidence 87778899999999998754321 24589999999998666654432 36899999999999664 46888888877
Q ss_pred HHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhh
Q 015712 316 NPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLME 352 (402)
Q Consensus 316 ~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~ 352 (402)
.++.... .....++|+|++|||+|+ ..+ +..|+.
T Consensus 232 ~rl~~~~-~~~~~~~riI~LSATl~N-~~d-vA~wL~ 265 (1724)
T 4f92_B 232 ARAIRNI-EMTQEDVRLIGLSATLPN-YED-VATFLR 265 (1724)
T ss_dssp HHHHHHH-HHHTCCCEEEEEECSCTT-HHH-HHHHTT
T ss_pred HHHHHHH-HhCCCCCcEEEEecccCC-HHH-HHHHhC
Confidence 7653221 112357899999999986 333 345554
No 53
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.91 E-value=1.9e-23 Score=239.52 Aligned_cols=190 Identities=15% Similarity=0.187 Sum_probs=152.4
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHHc-CCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCch
Q 015712 148 LKAEMIKAVEKMGLFVPSEIQCVGIPAVLN-GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTE 226 (402)
Q Consensus 148 l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~-g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~Ptr 226 (402)
|.....+.+...+|..++|+|.++++.++. ++|++++||||||||++|.+|++..+... .+.++||++||+
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~--------~~~kavyi~P~r 982 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQS--------SEGRCVYITPME 982 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHC--------TTCCEEEECSCH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhC--------CCCEEEEEcChH
Confidence 456778888888999999999999999985 56899999999999999999999998863 366899999999
Q ss_pred HHHHHHHHHHHH-hhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCC--CCCCeeEEEEcCCCccc
Q 015712 227 ESADQGFHMAKF-ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNV--SCDDIRYVVLDEADTLF 303 (402)
Q Consensus 227 eLa~Qi~~~~~~-l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~--~l~~l~~lVlDEad~~l 303 (402)
+||.|+++.+.. ++...+++|+.++|+...+... ..+++|+||||+++..+++++.. .++++++||+||+|.+.
T Consensus 983 aLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~~---~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~ 1059 (1724)
T 4f92_B 983 ALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKL---LGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIG 1059 (1724)
T ss_dssp HHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHHH---HHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGG
T ss_pred HHHHHHHHHHHHHhchhcCCEEEEEECCCCcchhh---cCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcC
Confidence 999999998864 6667799999999987644332 23479999999999887766432 36899999999999876
Q ss_pred cCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhh
Q 015712 304 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLME 352 (402)
Q Consensus 304 ~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~ 352 (402)
+ .++..++.++..+.... .....++|+|+||||+++. .+ +..|+.
T Consensus 1060 d-~rg~~le~il~rl~~i~-~~~~~~~riI~lSATl~N~-~d-la~WL~ 1104 (1724)
T 4f92_B 1060 G-ENGPVLEVICSRMRYIS-SQIERPIRIVALSSSLSNA-KD-VAHWLG 1104 (1724)
T ss_dssp S-TTHHHHHHHHHHHHHHH-HTTSSCCEEEEEESCBTTH-HH-HHHHHT
T ss_pred C-CCCccHHHHHHHHHHHH-hhcCCCceEEEEeCCCCCH-HH-HHHHhC
Confidence 5 57888888887775322 1223579999999999973 33 445554
No 54
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.89 E-value=2.2e-23 Score=221.86 Aligned_cols=174 Identities=17% Similarity=0.093 Sum_probs=131.5
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHH-HHHHHHhhc
Q 015712 163 VPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQG-FHMAKFISH 241 (402)
Q Consensus 163 ~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi-~~~~~~l~~ 241 (402)
.|+++|.++++.++.|+|+|+++|||+|||++|++|++..+..... .+.+.++|||+||++|+.|+ .+.+..+..
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~----~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~ 82 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKK----ASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 82 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHH----HTCCCCBCCEESCSHHHHHHHHHTHHHHHT
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccc----cCCCCeEEEEECCHHHHHHHHHHHHHHHcC
Confidence 7999999999999999999999999999999999999998876432 11347899999999999999 999988765
Q ss_pred cCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHh------hcCCCCCCCeeEEEEcCCCccccCCCH-HHHHHH
Q 015712 242 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHI------EDRNVSCDDIRYVVLDEADTLFDRGFG-PEISKI 314 (402)
Q Consensus 242 ~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l------~~~~~~l~~l~~lVlDEad~~l~~gf~-~~i~~i 314 (402)
. ++++..++|+.....+...+..+++|+|+||++|.+++ ....+.+.++++|||||||++...++. ..+..+
T Consensus 83 ~-~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~ 161 (699)
T 4gl2_A 83 K-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHY 161 (699)
T ss_dssp T-TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHH
T ss_pred c-CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHH
Confidence 4 58899999998776655566677899999999999988 445577889999999999998765533 333333
Q ss_pred HHH-hhhhh----cccCCCCceEEEEeeccCc
Q 015712 315 LNP-LKDSA----LKSNGQGFQTILVTAAIAE 341 (402)
Q Consensus 315 l~~-l~~~~----~~~~~~~~q~i~~SATl~~ 341 (402)
+.. +.... .....+.+|+|++|||++.
T Consensus 162 l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~ 193 (699)
T 4gl2_A 162 LMQKLKNNRLKKENKPVIPLPQILGLTASPGV 193 (699)
T ss_dssp HHHHHHHHHHHC----CCCCCEEEEECSCCCC
T ss_pred HHhhhcccccccccccCCCCCEEEEecccccc
Confidence 322 11100 0111246799999999997
No 55
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.89 E-value=3.3e-22 Score=201.23 Aligned_cols=164 Identities=16% Similarity=0.114 Sum_probs=134.7
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhcc
Q 015712 163 VPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHC 242 (402)
Q Consensus 163 ~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~ 242 (402)
.|+++|.++++.++.+ ++++.++||+|||++++++++..+.. .+.++|||+||++|+.|+.+.+..+...
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~---------~~~~~liv~P~~~L~~q~~~~~~~~~~~ 78 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK---------YGGKVLMLAPTKPLVLQHAESFRRLFNL 78 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH---------SCSCEEEECSSHHHHHHHHHHHHHHBCS
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc---------CCCeEEEEECCHHHHHHHHHHHHHHhCc
Confidence 7999999999999999 99999999999999999999988763 4678999999999999999999887644
Q ss_pred CCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCCCHHHHHHHHHHhhhhh
Q 015712 243 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSA 322 (402)
Q Consensus 243 ~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~~~~ 322 (402)
.+.++..++|+.......... .+++|+|+||+.|...+..+.+.+.++++|||||||++.+......+...+....
T Consensus 79 ~~~~v~~~~g~~~~~~~~~~~-~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~--- 154 (494)
T 1wp9_A 79 PPEKIVALTGEKSPEERSKAW-ARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQA--- 154 (494)
T ss_dssp CGGGEEEECSCSCHHHHHHHH-HHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHC---
T ss_pred chhheEEeeCCcchhhhhhhc-cCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcC---
Confidence 455888999988876544333 3579999999999999988888889999999999999986654444444443332
Q ss_pred cccCCCCceEEEEeeccCchhHH
Q 015712 323 LKSNGQGFQTILVTAAIAEMLGE 345 (402)
Q Consensus 323 ~~~~~~~~q~i~~SATl~~~v~~ 345 (402)
...+++++|||+......
T Consensus 155 -----~~~~~l~lTaTp~~~~~~ 172 (494)
T 1wp9_A 155 -----KNPLVIGLTASPGSTPEK 172 (494)
T ss_dssp -----SSCCEEEEESCSCSSHHH
T ss_pred -----CCCeEEEEecCCCCCcHH
Confidence 478999999999854333
No 56
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.88 E-value=1.8e-22 Score=216.16 Aligned_cols=167 Identities=14% Similarity=0.140 Sum_probs=133.5
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHHHHcC------CcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEc
Q 015712 150 AEMIKAVEKMGLFVPSEIQCVGIPAVLNG------KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLC 223 (402)
Q Consensus 150 ~~l~~~l~~~g~~~pt~iQ~~~i~~il~g------~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~ 223 (402)
..+.+.+..+|| .||++|.++|+.++.+ +|++++|+||||||++|++|++..+.. +.+++|++
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~----------g~qvlvla 424 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA----------GFQTAFMV 424 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH----------TSCEEEEC
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc----------CCeEEEEe
Confidence 455566788999 9999999999998875 599999999999999999999998764 67999999
Q ss_pred CchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHH---HhcC-CccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCC
Q 015712 224 TTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED---VSNA-PIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 299 (402)
Q Consensus 224 PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~---~l~~-~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEa 299 (402)
||++||.|+++.+..+....++++..++|+.....+.. .+.. .++|+||||+.+.+ .+.+.++++|||||+
T Consensus 425 Ptr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEa 499 (780)
T 1gm5_A 425 PTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQ 499 (780)
T ss_dssp SCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESC
T ss_pred CcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEeccc
Confidence 99999999999999988888899999999998766433 2333 58999999998754 456889999999999
Q ss_pred CccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHH
Q 015712 300 DTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 345 (402)
Q Consensus 300 d~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~ 345 (402)
|++. +.. ... +. ....++|+++||||+.+....
T Consensus 500 Hr~g---~~q--r~~---l~-----~~~~~~~vL~mSATp~p~tl~ 532 (780)
T 1gm5_A 500 HRFG---VKQ--REA---LM-----NKGKMVDTLVMSATPIPRSMA 532 (780)
T ss_dssp CCC----------CC---CC-----SSSSCCCEEEEESSCCCHHHH
T ss_pred chhh---HHH--HHH---HH-----HhCCCCCEEEEeCCCCHHHHH
Confidence 9862 111 111 11 122478999999998775544
No 57
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.88 E-value=7.2e-23 Score=194.68 Aligned_cols=157 Identities=15% Similarity=0.097 Sum_probs=125.7
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhcc
Q 015712 163 VPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHC 242 (402)
Q Consensus 163 ~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~ 242 (402)
.|+++|.++++.++.+.+.+++++||+|||+++++++...+.. ...++|||+||++|+.|+.+.+..+...
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~---------~~~~~lil~Pt~~L~~q~~~~l~~~~~~ 183 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN---------YEGKILIIVPTTALTTQMADDFVDYRLF 183 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH---------CSSEEEEECSSHHHHHHHHHHHHHHTSC
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHc---------CCCeEEEEECCHHHHHHHHHHHHHhccc
Confidence 7999999999999988899999999999999998888776653 2458999999999999999999988766
Q ss_pred CCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCCCHHHHHHHHHHhhhhh
Q 015712 243 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSA 322 (402)
Q Consensus 243 ~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~~~~ 322 (402)
.+..+..++|+..... ....+.+|+|+||+++.... ...+.++++|||||||++. ...+..++..+.
T Consensus 184 ~~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~~---~~~~~~~~~vIiDEaH~~~----~~~~~~il~~~~--- 250 (282)
T 1rif_A 184 SHAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQP---KEWFSQFGMMMNDECHLAT----GKSISSIISGLN--- 250 (282)
T ss_dssp CGGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTSC---GGGGGGEEEEEEETGGGCC----HHHHHHHTTTCT---
T ss_pred ccceEEEEeCCCcchh---hhccCCcEEEEchHHHHhhH---HHHHhhCCEEEEECCccCC----cccHHHHHHHhh---
Confidence 6677888888765432 22246899999999875442 2346789999999999985 356777776664
Q ss_pred cccCCCCceEEEEeeccCchhHHH
Q 015712 323 LKSNGQGFQTILVTAAIAEMLGEQ 346 (402)
Q Consensus 323 ~~~~~~~~q~i~~SATl~~~v~~~ 346 (402)
...++++||||+++....+
T Consensus 251 -----~~~~~l~lSATp~~~~~~~ 269 (282)
T 1rif_A 251 -----NCMFKFGLSGSLRDGKANI 269 (282)
T ss_dssp -----TCCEEEEECSSCCTTSTTH
T ss_pred -----cCCeEEEEeCCCCCcchHH
Confidence 3689999999998765433
No 58
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.87 E-value=1.8e-20 Score=208.97 Aligned_cols=184 Identities=17% Similarity=0.126 Sum_probs=144.8
Q ss_pred CCCCHHHHHHH-HHCCCCCCcHHHHHHHHHHHc----CC--cEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCe
Q 015712 146 LGLKAEMIKAV-EKMGLFVPSEIQCVGIPAVLN----GK--SVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPR 218 (402)
Q Consensus 146 l~l~~~l~~~l-~~~g~~~pt~iQ~~~i~~il~----g~--dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 218 (402)
++++....+.+ ..+|| .+|++|.++|+.++. |+ |+|++++||+|||++|+++++..+. .+.+
T Consensus 586 ~~~~~~~~~~~~~~f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~----------~g~~ 654 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD----------NHKQ 654 (1151)
T ss_dssp CCCCHHHHHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT----------TTCE
T ss_pred CCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH----------hCCe
Confidence 34555555555 44688 479999999999886 66 9999999999999999999887654 3679
Q ss_pred EEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHH---HhcC-CccEEEeCchhhHHHhhcCCCCCCCeeEE
Q 015712 219 AIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED---VSNA-PIGMLIATPSEVLQHIEDRNVSCDDIRYV 294 (402)
Q Consensus 219 ~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~---~l~~-~~~IlV~TP~~l~~~l~~~~~~l~~l~~l 294 (402)
++||+||++||.|+++.+..+....++++..++|......+.. .+.. .++|+||||+.+. ..+.+.++++|
T Consensus 655 vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~lv 729 (1151)
T 2eyq_A 655 VAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLL 729 (1151)
T ss_dssp EEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEE
T ss_pred EEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccceE
Confidence 9999999999999999998877777888988888777655433 2333 5999999997652 34668899999
Q ss_pred EEcCCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhcccccc
Q 015712 295 VLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDN 358 (402)
Q Consensus 295 VlDEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~~~~~ 358 (402)
||||+|++ +.....++..+. .++++++||||+.+....+....+.++..+.
T Consensus 730 IiDEaH~~-----g~~~~~~l~~l~--------~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~ 780 (1151)
T 2eyq_A 730 IVDEEHRF-----GVRHKERIKAMR--------ANVDILTLTATPIPRTLNMAMSGMRDLSIIA 780 (1151)
T ss_dssp EEESGGGS-----CHHHHHHHHHHH--------TTSEEEEEESSCCCHHHHHHHTTTSEEEECC
T ss_pred EEechHhc-----ChHHHHHHHHhc--------CCCCEEEEcCCCChhhHHHHHhcCCCceEEe
Confidence 99999984 445566666665 3789999999998888877777776665543
No 59
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.86 E-value=8.5e-22 Score=202.18 Aligned_cols=158 Identities=14% Similarity=0.087 Sum_probs=130.1
Q ss_pred CCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhh
Q 015712 161 LFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 240 (402)
Q Consensus 161 ~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~ 240 (402)
...|+++|..+++.++.+++++++++||+|||++|++++...+.. .+.++|||+||++|+.|+++.+..+.
T Consensus 111 ~~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~---------~~~~vlvl~P~~~L~~Q~~~~~~~~~ 181 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN---------YEGKILIIVPTTALTTQMADDFVDYR 181 (510)
T ss_dssp EECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHH---------CSSEEEEEESSHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhC---------CCCeEEEEECcHHHHHHHHHHHHHhh
Confidence 348999999999999999999999999999999999998887754 34599999999999999999999887
Q ss_pred ccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCCCHHHHHHHHHHhhh
Q 015712 241 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 320 (402)
Q Consensus 241 ~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~~ 320 (402)
...+..+..++|+.....+ +..+++|+|+||+.|... ....+.++++|||||||++.. ..+..++..+.
T Consensus 182 ~~~~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~---~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~- 250 (510)
T 2oca_A 182 LFSHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISGLN- 250 (510)
T ss_dssp SSCGGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCT-
T ss_pred cCCccceEEEecCCccccc---cccCCcEEEEeHHHHhhc---hhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcc-
Confidence 7767788888888776554 456789999999976433 334567899999999999853 55666666654
Q ss_pred hhcccCCCCceEEEEeeccCchhHH
Q 015712 321 SALKSNGQGFQTILVTAAIAEMLGE 345 (402)
Q Consensus 321 ~~~~~~~~~~q~i~~SATl~~~v~~ 345 (402)
...++++||||++.....
T Consensus 251 -------~~~~~l~lSATp~~~~~~ 268 (510)
T 2oca_A 251 -------NCMFKFGLSGSLRDGKAN 268 (510)
T ss_dssp -------TCCEEEEEESCGGGCSSC
T ss_pred -------cCcEEEEEEeCCCCCccc
Confidence 367999999999876543
No 60
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.86 E-value=2.8e-22 Score=203.28 Aligned_cols=157 Identities=15% Similarity=0.072 Sum_probs=116.8
Q ss_pred CCCCCcHHHHHHHHHHHcCCcE-EEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHH
Q 015712 160 GLFVPSEIQCVGIPAVLNGKSV-VLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 238 (402)
Q Consensus 160 g~~~pt~iQ~~~i~~il~g~dv-li~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~ 238 (402)
|+..|+|+|+ +||.++.|+++ +++||||||||++|++|++..+.. .++++||++||++||.|++..+.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~---------~~~~~lvl~Ptr~La~Q~~~~l~- 69 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL---------RRLRTLILAPTRVVAAEMEEALR- 69 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH---------TTCCEEEEESSHHHHHHHHHHTT-
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh---------cCCcEEEECCCHHHHHHHHHHhc-
Confidence 7899999986 79999999887 999999999999999999988765 46899999999999999988764
Q ss_pred hhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCCCHHHHHHHHHHh
Q 015712 239 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 318 (402)
Q Consensus 239 l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~gf~~~i~~il~~l 318 (402)
++.+....+.... ....+..|.|+|++.+.+.+... ..+.++++|||||||++ +.++...+..+....
T Consensus 70 -----g~~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~ 137 (451)
T 2jlq_A 70 -----GLPIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRV 137 (451)
T ss_dssp -----TSCEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHH
T ss_pred -----Cceeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHHHhh
Confidence 3333322222111 11234578999999998888654 55789999999999977 443333333333222
Q ss_pred hhhhcccCCCCceEEEEeeccCchhHHH
Q 015712 319 KDSALKSNGQGFQTILVTAAIAEMLGEQ 346 (402)
Q Consensus 319 ~~~~~~~~~~~~q~i~~SATl~~~v~~~ 346 (402)
. ..++|+|+||||++..+..+
T Consensus 138 ~-------~~~~~~i~~SAT~~~~~~~~ 158 (451)
T 2jlq_A 138 E-------MGEAAAIFMTATPPGSTDPF 158 (451)
T ss_dssp H-------TTSCEEEEECSSCTTCCCSS
T ss_pred c-------CCCceEEEEccCCCccchhh
Confidence 1 24789999999999865543
No 61
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.85 E-value=2e-21 Score=205.15 Aligned_cols=130 Identities=16% Similarity=0.224 Sum_probs=115.1
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHH
Q 015712 159 MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 238 (402)
Q Consensus 159 ~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~ 238 (402)
+|| +||++|..++|.++.|+ |+++.||+|||++|++|++...+. +.+|+||+||++||.|++.++..
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~----------G~qv~VvTPTreLA~Qdae~m~~ 142 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT----------GKGVHVVTVNDYLARRDAEWMGP 142 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT----------CSCCEEEESSHHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh----------CCCEEEEeCCHHHHHHHHHHHHH
Confidence 799 99999999999999998 999999999999999999755442 56899999999999999999999
Q ss_pred hhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhh-HHHhhcCC------CCCC---CeeEEEEcCCCccc
Q 015712 239 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV-LQHIEDRN------VSCD---DIRYVVLDEADTLF 303 (402)
Q Consensus 239 l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l-~~~l~~~~------~~l~---~l~~lVlDEad~~l 303 (402)
+..++++++++++||.+...+... .+++|+||||++| +++++.+. +.++ .+.++||||+|.|+
T Consensus 143 l~~~lGLsv~~i~Gg~~~~~r~~a--y~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 143 VYRGLGLSVGVIQHASTPAERRKA--YLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp HHHTTTCCEEECCTTCCHHHHHHH--HTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred HHHhcCCeEEEEeCCCCHHHHHHH--cCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 999999999999999886544333 4689999999999 89887653 4577 89999999999886
No 62
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.85 E-value=2.2e-22 Score=211.08 Aligned_cols=174 Identities=13% Similarity=0.064 Sum_probs=127.0
Q ss_pred ccc-CCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEE
Q 015712 143 FQE-LGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIV 221 (402)
Q Consensus 143 f~~-l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lv 221 (402)
|.. +++++.++++|... +..++|+|+.+++.++.|+|+|++|+||||||++|++|+++.+.. .++++||
T Consensus 151 ~~~~l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~---------~~~~vLv 220 (618)
T 2whx_A 151 GNGVVTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK---------RRLRTLI 220 (618)
T ss_dssp CC---------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH---------TTCCEEE
T ss_pred ccccccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh---------CCCeEEE
Confidence 444 66777777666654 588999999999999999999999999999999999999998876 4689999
Q ss_pred EcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCc
Q 015712 222 LCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 301 (402)
Q Consensus 222 l~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~ 301 (402)
|+|||+||.|+++.+. +..+....+... .....+..+.++|.+.+...+... ..+.++++|||||||+
T Consensus 221 l~PtreLa~Qi~~~l~------~~~v~~~~~~l~-----~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~ 288 (618)
T 2whx_A 221 LAPTRVVAAEMEEALR------GLPIRYQTPAVK-----SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHF 288 (618)
T ss_dssp EESSHHHHHHHHHHTT------TSCEEECCTTSS-----CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTC
T ss_pred EcChHHHHHHHHHHhc------CCceeEecccce-----eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCC
Confidence 9999999999988765 223332111100 011123446677777776655543 4578999999999999
Q ss_pred cccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHH
Q 015712 302 LFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQ 346 (402)
Q Consensus 302 ~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~ 346 (402)
| +.+|...+..|+..++. .++|+|+||||++..+..+
T Consensus 289 ~-~~~~~~~~~~i~~~l~~-------~~~q~il~SAT~~~~~~~~ 325 (618)
T 2whx_A 289 T-DPCSVAARGYISTRVEM-------GEAAAIFMTATPPGSTDPF 325 (618)
T ss_dssp C-SHHHHHHHHHHHHHHHH-------TSCEEEEECSSCTTCCCSS
T ss_pred C-CccHHHHHHHHHHHhcc-------cCccEEEEECCCchhhhhh
Confidence 8 67788888888887753 4789999999999876544
No 63
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.82 E-value=3.7e-20 Score=188.19 Aligned_cols=137 Identities=14% Similarity=0.106 Sum_probs=113.7
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhcc
Q 015712 163 VPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHC 242 (402)
Q Consensus 163 ~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~ 242 (402)
.|+++|.++++.++.+++++++++||+|||++|+.++... +.++||||||++|+.|++..+..+
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~-------------~~~~Lvl~P~~~L~~Q~~~~~~~~--- 156 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-------------STPTLIVVPTLALAEQWKERLGIF--- 156 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH-------------CSCEEEEESSHHHHHHHHHHGGGG---
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc-------------CCCEEEEECCHHHHHHHHHHHHhC---
Confidence 7999999999999999999999999999999999988752 468999999999999988877763
Q ss_pred CCcc-eeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCCCHHHHHHHHHHhhhh
Q 015712 243 ARLD-SSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDS 321 (402)
Q Consensus 243 ~~~~-v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~~~ 321 (402)
++. +..++|+... ..+|+|+||+.+...+... ..++++|||||||++.+.+|.. ++..++
T Consensus 157 -~~~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~~---~~~~~liIvDEaH~~~~~~~~~----~~~~~~-- 217 (472)
T 2fwr_A 157 -GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAESYVQ----IAQMSI-- 217 (472)
T ss_dssp -CGGGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHHH---TTTCSEEEEETGGGTTSTTTHH----HHHTCC--
T ss_pred -CCcceEEECCCcCC---------cCCEEEEEcHHHHHHHHHh---cCCCCEEEEECCcCCCChHHHH----HHHhcC--
Confidence 677 8888887642 4789999999998776531 2458999999999998877653 444443
Q ss_pred hcccCCCCceEEEEeeccCc
Q 015712 322 ALKSNGQGFQTILVTAAIAE 341 (402)
Q Consensus 322 ~~~~~~~~~q~i~~SATl~~ 341 (402)
..++|++|||+..
T Consensus 218 -------~~~~l~lSATp~~ 230 (472)
T 2fwr_A 218 -------APFRLGLTATFER 230 (472)
T ss_dssp -------CSEEEEEESCCCC
T ss_pred -------CCeEEEEecCccC
Confidence 6799999999973
No 64
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.82 E-value=4.3e-21 Score=200.93 Aligned_cols=148 Identities=13% Similarity=0.045 Sum_probs=117.2
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhcc
Q 015712 163 VPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHC 242 (402)
Q Consensus 163 ~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~ 242 (402)
.+++.|..+++.+..++|++++|+||||||++|.+|+++ .+.++||++|||+||.|+++.+...
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~-------------~g~~vLVl~PTReLA~Qia~~l~~~--- 280 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA-------------QGYKVLVLNPSVAATLGFGAYMSKA--- 280 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH-------------TTCCEEEEESCHHHHHHHHHHHHHH---
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH-------------CCCeEEEEcchHHHHHHHHHHHHHH---
Confidence 345556666666668889999999999999999999876 3568999999999999998866543
Q ss_pred CCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCCCHHHHHHHHHHhhhhh
Q 015712 243 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSA 322 (402)
Q Consensus 243 ~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~~~~ 322 (402)
.+..+...+|+.. +..+++|+|+||++| +.+..+.+.++++||||||| +++.+|...+..|+..++..
T Consensus 281 ~g~~vg~~vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH-~l~~~~~~~l~~Il~~l~~~- 348 (666)
T 3o8b_A 281 HGIDPNIRTGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECH-STDSTTILGIGTVLDQAETA- 348 (666)
T ss_dssp HSCCCEEECSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTT-CCSHHHHHHHHHHHHHTTTT-
T ss_pred hCCCeeEEECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccch-hcCccHHHHHHHHHHhhhhc-
Confidence 3556667777754 456789999999997 45667788999999999996 66788888899999888642
Q ss_pred cccCCCCceEEEEeeccCchh
Q 015712 323 LKSNGQGFQTILVTAAIAEML 343 (402)
Q Consensus 323 ~~~~~~~~q~i~~SATl~~~v 343 (402)
....+++||||++..+
T Consensus 349 -----~~~llil~SAT~~~~i 364 (666)
T 3o8b_A 349 -----GARLVVLATATPPGSV 364 (666)
T ss_dssp -----TCSEEEEEESSCTTCC
T ss_pred -----CCceEEEECCCCCccc
Confidence 1334788899999853
No 65
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.81 E-value=2.1e-19 Score=166.72 Aligned_cols=139 Identities=14% Similarity=0.111 Sum_probs=110.3
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhc
Q 015712 162 FVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 241 (402)
Q Consensus 162 ~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~ 241 (402)
..|+++|.+++..++.+++++++++||+|||++++.++.. .+.++||++||++|+.|+.+.+..+
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~-------------~~~~~liv~P~~~L~~q~~~~~~~~-- 156 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINE-------------LSTPTLIVVPTLALAEQWKERLGIF-- 156 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHH-------------SCSCEEEEESSHHHHHHHHHHHGGG--
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHH-------------cCCCEEEEeCCHHHHHHHHHHHHhC--
Confidence 3799999999999999999999999999999998877654 2467999999999999988877663
Q ss_pred cCCcc-eeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCCCHHHHHHHHHHhhh
Q 015712 242 CARLD-SSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 320 (402)
Q Consensus 242 ~~~~~-v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~~ 320 (402)
++. +..+.|+.. ...+|+|+|++.+...+... ...+++|||||||++.+..| ..++..++
T Consensus 157 --~~~~v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~~---~~~~~llIiDEaH~l~~~~~----~~i~~~~~- 217 (237)
T 2fz4_A 157 --GEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAESY----VQIAQMSI- 217 (237)
T ss_dssp --CGGGEEEESSSCB---------CCCSEEEEEHHHHHHTHHHH---TTTCSEEEEECSSCCCTTTH----HHHHHTCC-
T ss_pred --CCCeEEEEeCCCC---------CcCCEEEEeHHHHHhhHHHh---cccCCEEEEECCccCCChHH----HHHHHhcc-
Confidence 667 777777654 24689999999987766531 24589999999999976553 34555443
Q ss_pred hhcccCCCCceEEEEeeccCch
Q 015712 321 SALKSNGQGFQTILVTAAIAEM 342 (402)
Q Consensus 321 ~~~~~~~~~~q~i~~SATl~~~ 342 (402)
..++|++|||+...
T Consensus 218 --------~~~~l~LSATp~r~ 231 (237)
T 2fz4_A 218 --------APFRLGLTATFERE 231 (237)
T ss_dssp --------CSEEEEEEESCC--
T ss_pred --------CCEEEEEecCCCCC
Confidence 57899999999864
No 66
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.81 E-value=4.8e-22 Score=210.10 Aligned_cols=155 Identities=17% Similarity=0.124 Sum_probs=109.0
Q ss_pred HHHHCCCC-----CCcHHHH-----HHHHHHH------cCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCe
Q 015712 155 AVEKMGLF-----VPSEIQC-----VGIPAVL------NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPR 218 (402)
Q Consensus 155 ~l~~~g~~-----~pt~iQ~-----~~i~~il------~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~ 218 (402)
+|..+||. .||++|+ .+||.++ .|+|+|++|+||||||++|++|++..+.. .+++
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~---------~~~~ 272 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ---------KRLR 272 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH---------TTCC
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh---------CCCc
Confidence 45666777 8999999 9999988 89999999999999999999999998765 4689
Q ss_pred EEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcC--------CCCCCC
Q 015712 219 AIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR--------NVSCDD 290 (402)
Q Consensus 219 ~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~--------~~~l~~ 290 (402)
+|||+||++||.|+++.+..+ + +....+... .++||+++++++..+ ...+.+
T Consensus 273 ~lilaPTr~La~Q~~~~l~~~----~--i~~~~~~l~--------------~v~tp~~ll~~l~~~~l~~~l~~~~~l~~ 332 (673)
T 2wv9_A 273 TAVLAPTRVVAAEMAEALRGL----P--VRYLTPAVQ--------------REHSGNEIVDVMCHATLTHRLMSPLRVPN 332 (673)
T ss_dssp EEEEESSHHHHHHHHHHTTTS----C--CEECCC-----------------CCCCSCCCEEEEEHHHHHHHHHSSSCCCC
T ss_pred EEEEccHHHHHHHHHHHHhcC----C--eeeeccccc--------------ccCCHHHHHHHHHhhhhHHHHhccccccc
Confidence 999999999999998877643 1 211111100 155665554433322 246889
Q ss_pred eeEEEEcCCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHH
Q 015712 291 IRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQ 346 (402)
Q Consensus 291 l~~lVlDEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~ 346 (402)
+++|||||||++ +.++...+..+...+.. .++|+|+||||++..+..+
T Consensus 333 l~lvViDEaH~~-~~~~~~~~~~l~~~~~~-------~~~~vl~~SAT~~~~i~~~ 380 (673)
T 2wv9_A 333 YNLFVMDEAHFT-DPASIAARGYIATRVEA-------GEAAAIFMTATPPGTSDPF 380 (673)
T ss_dssp CSEEEEESTTCC-CHHHHHHHHHHHHHHHT-------TSCEEEEECSSCTTCCCSS
T ss_pred ceEEEEeCCccc-CccHHHHHHHHHHhccc-------cCCcEEEEcCCCChhhhhh
Confidence 999999999998 22233334344433321 3789999999999876544
No 67
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.80 E-value=2.3e-19 Score=192.72 Aligned_cols=191 Identities=10% Similarity=0.108 Sum_probs=133.0
Q ss_pred ccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHc-CCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCC
Q 015712 138 EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLN-GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMH 216 (402)
Q Consensus 138 ~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~-g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~ 216 (402)
.++..|.++++++.+.+.+...| ..|+++|+.+|+.++. |++++++||||||||+ ++|++....... .+.+
T Consensus 69 ~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~~-----~~~g 140 (773)
T 2xau_A 69 GKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEMP-----HLEN 140 (773)
T ss_dssp SSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHCG-----GGGT
T ss_pred CCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhccc-----cCCC
Confidence 34678999999999999999998 7999999999998775 5689999999999999 566662221110 1136
Q ss_pred CeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEE
Q 015712 217 PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVL 296 (402)
Q Consensus 217 ~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVl 296 (402)
.+++|++|+++||.|++..+... .+..+...+|+..... .....+.+|+|+|||++.+.+... ..+.++++|||
T Consensus 141 ~~ilvl~P~r~La~q~~~~l~~~---~~~~v~~~vG~~i~~~--~~~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~lIl 214 (773)
T 2xau_A 141 TQVACTQPRRVAAMSVAQRVAEE---MDVKLGEEVGYSIRFE--NKTSNKTILKYMTDGMLLREAMED-HDLSRYSCIIL 214 (773)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH---TTCCBTTTEEEEETTE--EECCTTCSEEEEEHHHHHHHHHHS-TTCTTEEEEEE
T ss_pred ceEEecCchHHHHHHHHHHHHHH---hCCchhheecceeccc--cccCCCCCEEEECHHHHHHHHhhC-ccccCCCEEEe
Confidence 78999999999999988755432 3444444444211000 012346789999999999887664 45889999999
Q ss_pred cCCCc-cccCCC-HHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhcc
Q 015712 297 DEADT-LFDRGF-GPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECL 354 (402)
Q Consensus 297 DEad~-~l~~gf-~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~ 354 (402)
||+|. +++..+ ...+..++... ++.|+|+||||++. .. +..|+.+.
T Consensus 215 DEah~R~ld~d~~~~~l~~l~~~~---------~~~~iIl~SAT~~~--~~-l~~~~~~~ 262 (773)
T 2xau_A 215 DEAHERTLATDILMGLLKQVVKRR---------PDLKIIIMSATLDA--EK-FQRYFNDA 262 (773)
T ss_dssp CSGGGCCHHHHHHHHHHHHHHHHC---------TTCEEEEEESCSCC--HH-HHHHTTSC
T ss_pred cCccccccchHHHHHHHHHHHHhC---------CCceEEEEeccccH--HH-HHHHhcCC
Confidence 99995 555331 22233333222 37899999999964 33 34555543
No 68
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.79 E-value=2.2e-20 Score=188.69 Aligned_cols=137 Identities=19% Similarity=0.172 Sum_probs=100.3
Q ss_pred HHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCC
Q 015712 174 AVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGG 253 (402)
Q Consensus 174 ~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg 253 (402)
++++|+|++++||||||||++|++|+++.+.. .++++||++||++||.|+++.+..+ .+....+.
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~---------~~~~~lil~Ptr~La~Q~~~~l~~~------~v~~~~~~ 68 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR---------RRLRTLVLAPTRVVLSEMKEAFHGL------DVKFHTQA 68 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH---------TTCCEEEEESSHHHHHHHHHHTTTS------CEEEESSC
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh---------cCCeEEEEcchHHHHHHHHHHHhcC------CeEEeccc
Confidence 35689999999999999999999999998775 4679999999999999999877633 22221111
Q ss_pred CChHHHHHHhcCCccEEEeCchhhHHHhhcCC--------CCCCCeeEEEEcCCCccccCCCHHHHHHHHHHhhhhhccc
Q 015712 254 VSSKALEDVSNAPIGMLIATPSEVLQHIEDRN--------VSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKS 325 (402)
Q Consensus 254 ~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~--------~~l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~~~~~~~ 325 (402)
. -.|+||+++++++..+. ..+.++++|||||||+| +.++...+..+...+..
T Consensus 69 ~--------------~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~----- 128 (440)
T 1yks_A 69 F--------------SAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARA----- 128 (440)
T ss_dssp C--------------CCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHT-----
T ss_pred c--------------eeccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhcc-----
Confidence 0 03788888766554332 34789999999999998 44444444444443331
Q ss_pred CCCCceEEEEeeccCchhHHHH
Q 015712 326 NGQGFQTILVTAAIAEMLGEQL 347 (402)
Q Consensus 326 ~~~~~q~i~~SATl~~~v~~~~ 347 (402)
.++|+++||||+++.+..+.
T Consensus 129 --~~~~~l~~SAT~~~~~~~~~ 148 (440)
T 1yks_A 129 --NESATILMTATPPGTSDEFP 148 (440)
T ss_dssp --TSCEEEEECSSCTTCCCSSC
T ss_pred --CCceEEEEeCCCCchhhhhh
Confidence 47899999999988765443
No 69
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.78 E-value=5.7e-19 Score=184.56 Aligned_cols=169 Identities=15% Similarity=0.114 Sum_probs=101.4
Q ss_pred CCcHHHHHHHHHHHc----C-CcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHH-HHH
Q 015712 163 VPSEIQCVGIPAVLN----G-KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGF-HMA 236 (402)
Q Consensus 163 ~pt~iQ~~~i~~il~----g-~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~-~~~ 236 (402)
.|+++|..+++.++. | ++++++++||+|||+++ ++++..+....+.......++++|||+||++|+.|++ +.+
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~-~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVA-FQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHH-HHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHH-HHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 799999999998875 4 56999999999999996 4555555543211111225789999999999999988 655
Q ss_pred HHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhc----CCCCCCCeeEEEEcCCCccccCCCHHHHH
Q 015712 237 KFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIED----RNVSCDDIRYVVLDEADTLFDRGFGPEIS 312 (402)
Q Consensus 237 ~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~----~~~~l~~l~~lVlDEad~~l~~gf~~~i~ 312 (402)
..+ +..+..+.++ ....+.+|+|+||++|..++.. ..+....+++|||||||++...+ ...+.
T Consensus 257 ~~~----~~~~~~~~~~--------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~ 323 (590)
T 3h1t_A 257 TPF----GDARHKIEGG--------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWR 323 (590)
T ss_dssp TTT----CSSEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CH
T ss_pred Hhc----chhhhhhhcc--------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHH
Confidence 544 2334444433 2345679999999999887642 34556789999999999986543 34566
Q ss_pred HHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhhcc
Q 015712 313 KILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECL 354 (402)
Q Consensus 313 ~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~~~ 354 (402)
.++..++ ..++|+||||...........++..+
T Consensus 324 ~il~~~~---------~~~~l~lTATP~~~~~~~~~~~f~~~ 356 (590)
T 3h1t_A 324 EILEYFE---------PAFQIGMTATPLREDNRDTYRYFGNP 356 (590)
T ss_dssp HHHHHST---------TSEEEEEESSCSCTTTHHHHHHSCSC
T ss_pred HHHHhCC---------cceEEEeccccccccchhHHHHcCCc
Confidence 7777775 57899999998865554445555443
No 70
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.76 E-value=2.1e-18 Score=173.72 Aligned_cols=141 Identities=18% Similarity=0.120 Sum_probs=100.0
Q ss_pred cCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCCh
Q 015712 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSS 256 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~ 256 (402)
.|+|++++||||||||++|++|+++.+.. .+.++||++||++||.|++..+. ++.+.+..|+...
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~---------~g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~ 65 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK---------KRLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS 65 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH---------TTCCEEEEESSHHHHHHHHHHTT------TSCEEEC------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh---------CCCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc
Confidence 47899999999999999999999977665 46799999999999999887664 4556655554221
Q ss_pred HHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEe
Q 015712 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVT 336 (402)
Q Consensus 257 ~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~S 336 (402)
....+.-+.+.|.+.+...+.. ...+.++++|||||+|++ +.++......+..... ..++|+|+||
T Consensus 66 -----~~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~-------~~~~~~l~~S 131 (431)
T 2v6i_A 66 -----ERTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVS-------MGDAGAIFMT 131 (431)
T ss_dssp --------CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHH-------TTSCEEEEEE
T ss_pred -----cCCCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhh-------CCCCcEEEEe
Confidence 1122345667788888776665 556889999999999987 4333344444433321 1478999999
Q ss_pred eccCchhHHH
Q 015712 337 AAIAEMLGEQ 346 (402)
Q Consensus 337 ATl~~~v~~~ 346 (402)
||+++.+..+
T Consensus 132 AT~~~~~~~~ 141 (431)
T 2v6i_A 132 ATPPGTTEAF 141 (431)
T ss_dssp SSCTTCCCSS
T ss_pred CCCCcchhhh
Confidence 9999865543
No 71
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.75 E-value=1.6e-18 Score=176.05 Aligned_cols=145 Identities=16% Similarity=0.105 Sum_probs=98.2
Q ss_pred HHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccC
Q 015712 173 PAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENG 252 (402)
Q Consensus 173 ~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~g 252 (402)
..+..|+++|++||||||||++|++|+++.+.. .++++||++|||+||.|++..+. ++.+....+
T Consensus 16 ~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~---------~~~~~lvl~Ptr~La~Q~~~~l~------g~~v~~~~~ 80 (459)
T 2z83_A 16 NMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ---------QRLRTAVLAPTRVVAAEMAEALR------GLPVRYQTS 80 (459)
T ss_dssp GGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH---------TTCCEEEEECSHHHHHHHHHHTT------TSCEEECC-
T ss_pred HHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh---------CCCcEEEECchHHHHHHHHHHhc------CceEeEEec
Confidence 345678999999999999999999999998875 46899999999999999988775 333333222
Q ss_pred CCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCCCHHHHHHHHHHhhhhhcccCCCCceE
Q 015712 253 GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQT 332 (402)
Q Consensus 253 g~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~ 332 (402)
..... -..+.-+.++|.+.+...+... ..+.++++|||||||++ +..+...+..+..... ..++|+
T Consensus 81 ~~~~~-----~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~-~~~~~~~~~~~~~~~~-------~~~~~~ 146 (459)
T 2z83_A 81 AVQRE-----HQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFT-DPASIAARGYIATKVE-------LGEAAA 146 (459)
T ss_dssp ------------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCC-SHHHHHHHHHHHHHHH-------TTSCEE
T ss_pred ccccC-----CCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccC-CchhhHHHHHHHHHhc-------cCCccE
Confidence 21110 1223457788888887666543 55889999999999984 1111111111211111 147899
Q ss_pred EEEeeccCchhHHH
Q 015712 333 ILVTAAIAEMLGEQ 346 (402)
Q Consensus 333 i~~SATl~~~v~~~ 346 (402)
|+||||++..+..+
T Consensus 147 il~SAT~~~~~~~~ 160 (459)
T 2z83_A 147 IFMTATPPGTTDPF 160 (459)
T ss_dssp EEECSSCTTCCCSS
T ss_pred EEEEcCCCcchhhh
Confidence 99999999876544
No 72
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.73 E-value=9.6e-18 Score=184.12 Aligned_cols=168 Identities=13% Similarity=0.120 Sum_probs=124.7
Q ss_pred CHHHHHHHHHCC-------CCCCcHHHHHHHHHHHc--------------CCcEEEEcCCCCChhhHhHHHHHHHHHhhc
Q 015712 149 KAEMIKAVEKMG-------LFVPSEIQCVGIPAVLN--------------GKSVVLSSGSGSGRTLAYLLPLVQMLRRDE 207 (402)
Q Consensus 149 ~~~l~~~l~~~g-------~~~pt~iQ~~~i~~il~--------------g~dvli~a~TGsGKTla~~lpil~~l~~~~ 207 (402)
++.++..+..+- ...|+++|..|++.++. +++.+++++||||||+++ ++++..+..
T Consensus 250 ~~~ll~~l~~f~~~~~~~~~~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~-- 326 (1038)
T 2w00_A 250 KHTLLNVLVNYSVFDSSQTLLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATE-- 326 (1038)
T ss_dssp HHHHHHHHHHSEEECTTCCEEECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTT--
T ss_pred hHHHHHHHHhheeeccccccccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHh--
Confidence 355666676642 23599999999999875 368999999999999997 666654432
Q ss_pred ccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHh-cCCccEEEeCchhhHHHhhcCC-
Q 015712 208 ALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS-NAPIGMLIATPSEVLQHIEDRN- 285 (402)
Q Consensus 208 ~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l-~~~~~IlV~TP~~l~~~l~~~~- 285 (402)
.+...++|||||+++|+.|+...+..+... .+.|+.+.......+ ..+++|+|+||++|..++....
T Consensus 327 -----~~~~~rvLvlvpr~eL~~Q~~~~f~~f~~~------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~ 395 (1038)
T 2w00_A 327 -----LDFIDKVFFVVDRKDLDYQTMKEYQRFSPD------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESD 395 (1038)
T ss_dssp -----CTTCCEEEEEECGGGCCHHHHHHHHTTSTT------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCC
T ss_pred -----cCCCceEEEEeCcHHHHHHHHHHHHHhccc------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccc
Confidence 123569999999999999999888876532 234555555555555 3568999999999999876532
Q ss_pred -CCCCCeeEEEEcCCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCch
Q 015712 286 -VSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEM 342 (402)
Q Consensus 286 -~~l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~ 342 (402)
..+....+||+||||++.. +.....|+..++ +.++++||||+...
T Consensus 396 ~~~~~~~~lvIiDEAHrs~~---~~~~~~I~~~~p---------~a~~lgfTATP~~~ 441 (1038)
T 2w00_A 396 LPVYNQQVVFIFDECHRSQF---GEAQKNLKKKFK---------RYYQFGFTGTPIFP 441 (1038)
T ss_dssp CGGGGSCEEEEEESCCTTHH---HHHHHHHHHHCS---------SEEEEEEESSCCCS
T ss_pred hhccccccEEEEEccchhcc---hHHHHHHHHhCC---------cccEEEEeCCcccc
Confidence 2356789999999999752 344556666664 57999999999753
No 73
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.71 E-value=3.8e-17 Score=169.57 Aligned_cols=131 Identities=20% Similarity=0.093 Sum_probs=103.9
Q ss_pred CCCCCcHHHHHHHHH----HHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHH
Q 015712 160 GLFVPSEIQCVGIPA----VLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHM 235 (402)
Q Consensus 160 g~~~pt~iQ~~~i~~----il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~ 235 (402)
|| .|+|.|.+++.. +..|+++++.||||+|||++|++|++. .++++||++||++|+.|+.+.
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~-------------~~~~v~i~~pt~~l~~q~~~~ 66 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE-------------VKPKVLFVVRTHNEFYPIYRD 66 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH-------------HCSEEEEEESSGGGHHHHHHH
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh-------------CCCeEEEEcCCHHHHHHHHHH
Confidence 56 799999997764 457999999999999999999999997 267999999999999999999
Q ss_pred HHHhhccCCcceeeccCCCCh---------------------------------HHHH------------------HHhc
Q 015712 236 AKFISHCARLDSSMENGGVSS---------------------------------KALE------------------DVSN 264 (402)
Q Consensus 236 ~~~l~~~~~~~v~~~~gg~~~---------------------------------~~~~------------------~~l~ 264 (402)
+..+....++++..+.|..+. ..+. +...
T Consensus 67 ~~~l~~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~ 146 (551)
T 3crv_A 67 LTKIREKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSL 146 (551)
T ss_dssp HTTCCCSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHG
T ss_pred HHHHhhhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhh
Confidence 998877777888777663221 1111 2233
Q ss_pred CCccEEEeCchhhHHHhhcCCCCC-CCeeEEEEcCCCcccc
Q 015712 265 APIGMLIATPSEVLQHIEDRNVSC-DDIRYVVLDEADTLFD 304 (402)
Q Consensus 265 ~~~~IlV~TP~~l~~~l~~~~~~l-~~l~~lVlDEad~~l~ 304 (402)
..++|||+|++.|++...+..+.+ ....++||||||.|.+
T Consensus 147 ~~adIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 147 YKADVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp GGCSEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred hcCCEEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 468999999999998865443333 4678999999999987
No 74
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.67 E-value=3.7e-17 Score=172.53 Aligned_cols=160 Identities=14% Similarity=0.107 Sum_probs=109.9
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHH
Q 015712 149 KAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEES 228 (402)
Q Consensus 149 ~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreL 228 (402)
..+.++++.++++ |. |.......+.|++++++||||||||+ +++..+.. ...++|++|||+|
T Consensus 130 ~~d~l~~i~dl~~--p~--~~~p~ar~l~rk~vlv~apTGSGKT~----~al~~l~~----------~~~gl~l~PtR~L 191 (677)
T 3rc3_A 130 CKDDLRKISDLRI--PP--NWYPDARAMQRKIIFHSGPTNSGKTY----HAIQKYFS----------AKSGVYCGPLKLL 191 (677)
T ss_dssp CHHHHHHHTBCCC--GG--GGCHHHHTSCCEEEEEECCTTSSHHH----HHHHHHHH----------SSSEEEEESSHHH
T ss_pred CHHHHHHHhhccC--hh--hhCHHHHhcCCCEEEEEcCCCCCHHH----HHHHHHHh----------cCCeEEEeCHHHH
Confidence 3344455544433 33 33334456789999999999999998 44555544 2345999999999
Q ss_pred HHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCCCH
Q 015712 229 ADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFG 308 (402)
Q Consensus 229 a~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~gf~ 308 (402)
|.|+++.+..+ ++.+..++|+..... .......+++++|++.+. ....+++|||||||+|++.+|+
T Consensus 192 A~Qi~~~l~~~----g~~v~lltG~~~~iv--~TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g 257 (677)
T 3rc3_A 192 AHEIFEKSNAA----GVPCDLVTGEERVTV--QPNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARG 257 (677)
T ss_dssp HHHHHHHHHHT----TCCEEEECSSCEECC--STTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTH
T ss_pred HHHHHHHHHhc----CCcEEEEECCeeEEe--cCCCcccceeEecHhHhh--------hcccCCEEEEecceecCCccch
Confidence 99999998775 678888888754300 000012445555554321 2467899999999999999999
Q ss_pred HHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHH
Q 015712 309 PEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLS 348 (402)
Q Consensus 309 ~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~ 348 (402)
..+..++..++. ...|++++|||.+ .+..++.
T Consensus 258 ~~~~~~l~~l~~-------~~i~il~~SAT~~-~i~~l~~ 289 (677)
T 3rc3_A 258 WAWTRALLGLCA-------EEVHLCGEPAAID-LVMELMY 289 (677)
T ss_dssp HHHHHHHHHCCE-------EEEEEEECGGGHH-HHHHHHH
T ss_pred HHHHHHHHccCc-------cceEEEeccchHH-HHHHHHH
Confidence 999999888762 3689999999953 3444433
No 75
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.59 E-value=8.4e-16 Score=159.04 Aligned_cols=127 Identities=19% Similarity=0.221 Sum_probs=87.8
Q ss_pred CCCCCCcHHHHHHHHH----HHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHH
Q 015712 159 MGLFVPSEIQCVGIPA----VLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFH 234 (402)
Q Consensus 159 ~g~~~pt~iQ~~~i~~----il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~ 234 (402)
.|| .|+++|.+++.. +..|+++++.||||+|||++|++|++. .++++||++||++|+.|+.+
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~-------------~~~~~~~~~~t~~l~~q~~~ 69 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQ-------------LKKKVLIFTRTHSQLDSIYK 69 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHH-------------HTCEEEEEESCHHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHh-------------CCCcEEEEcCCHHHHHHHHH
Confidence 578 899999998654 568999999999999999999999875 25799999999999999988
Q ss_pred HHHHhhccCCcceeeccCCCCh--------H---------------------------------------HHHHHhcCCc
Q 015712 235 MAKFISHCARLDSSMENGGVSS--------K---------------------------------------ALEDVSNAPI 267 (402)
Q Consensus 235 ~~~~l~~~~~~~v~~~~gg~~~--------~---------------------------------------~~~~~l~~~~ 267 (402)
.+..+ ++++..+.|.... . ...+.....+
T Consensus 70 ~~~~l----~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~a 145 (540)
T 2vl7_A 70 NAKLL----GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDK 145 (540)
T ss_dssp HHGGG----TCCEEEC---------------------------------------------------------CTTGGGC
T ss_pred HHHhc----CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcC
Confidence 77664 4444444432210 0 0001112357
Q ss_pred cEEEeCchhhHHHhhcCCC-------CCCCeeEEEEcCCCccc
Q 015712 268 GMLIATPSEVLQHIEDRNV-------SCDDIRYVVLDEADTLF 303 (402)
Q Consensus 268 ~IlV~TP~~l~~~l~~~~~-------~l~~l~~lVlDEad~~l 303 (402)
+|||+|+..|++....+.+ .+....++||||||.|.
T Consensus 146 diVV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 146 DVIAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp SEEEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred CEEEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 9999999999886543221 24567899999999994
No 76
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.57 E-value=8.9e-15 Score=149.48 Aligned_cols=150 Identities=17% Similarity=0.209 Sum_probs=108.7
Q ss_pred CCCcHHHHHHHHHH----HcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHH
Q 015712 162 FVPSEIQCVGIPAV----LNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK 237 (402)
Q Consensus 162 ~~pt~iQ~~~i~~i----l~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~ 237 (402)
..|+|+|.+++..+ ..|+++|++.+||+|||++++ +++..+... ....++|||||+ .|+.|..+.+.
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai-~~i~~~~~~-------~~~~~~LIv~P~-~l~~qw~~e~~ 106 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTI-AVFSDAKKE-------NELTPSLVICPL-SVLKNWEEELS 106 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHH-HHHHHHHHT-------TCCSSEEEEECS-TTHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHH-HHHHHHHhc-------CCCCCEEEEccH-HHHHHHHHHHH
Confidence 36999999999876 357899999999999999964 444444432 135689999995 68899888888
Q ss_pred HhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCCCHHHHHHHHHH
Q 015712 238 FISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNP 317 (402)
Q Consensus 238 ~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~gf~~~i~~il~~ 317 (402)
.+.. ++++.+++|+... .....++|+|+|++.+..... +....+++||+||||++-+.+ ......+..
T Consensus 107 ~~~~--~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~--~~~~~~l~~ 174 (500)
T 1z63_A 107 KFAP--HLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQ--TKIFKAVKE 174 (500)
T ss_dssp HHCT--TSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTT--SHHHHHHHT
T ss_pred HHCC--CceEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHh--HHHHHHHHh
Confidence 7753 5677777776532 112357899999999865543 334568999999999996544 234455555
Q ss_pred hhhhhcccCCCCceEEEEeeccCc
Q 015712 318 LKDSALKSNGQGFQTILVTAAIAE 341 (402)
Q Consensus 318 l~~~~~~~~~~~~q~i~~SATl~~ 341 (402)
++ ..+.+++|||...
T Consensus 175 l~---------~~~~l~LTaTP~~ 189 (500)
T 1z63_A 175 LK---------SKYRIALTGTPIE 189 (500)
T ss_dssp SC---------EEEEEEECSSCST
T ss_pred hc---------cCcEEEEecCCCC
Confidence 53 4578999999854
No 77
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.45 E-value=9.8e-14 Score=152.58 Aligned_cols=160 Identities=16% Similarity=0.062 Sum_probs=107.5
Q ss_pred CCCcHHHHHHHHHHHc--CCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHh
Q 015712 162 FVPSEIQCVGIPAVLN--GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 239 (402)
Q Consensus 162 ~~pt~iQ~~~i~~il~--g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l 239 (402)
..|+|+|..++..++. +.++|++++||+|||++++..+...+... ...++|||||+ .|+.|....+...
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g--------~~~rvLIVvP~-sLl~Qw~~E~~~~ 222 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSG--------AAERVLIIVPE-TLQHQWLVEMLRR 222 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTS--------SCCCEEEECCT-TTHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhC--------CCCeEEEEeCH-HHHHHHHHHHHHH
Confidence 3689999999998876 45899999999999999877776665432 34589999999 9999977777543
Q ss_pred hccCCcceeeccCCCChHHHHH--HhcCCccEEEeCchhhHHHhhc-CCCCCCCeeEEEEcCCCccccCCCH-HHHHHHH
Q 015712 240 SHCARLDSSMENGGVSSKALED--VSNAPIGMLIATPSEVLQHIED-RNVSCDDIRYVVLDEADTLFDRGFG-PEISKIL 315 (402)
Q Consensus 240 ~~~~~~~v~~~~gg~~~~~~~~--~l~~~~~IlV~TP~~l~~~l~~-~~~~l~~l~~lVlDEad~~l~~gf~-~~i~~il 315 (402)
. ++.+..+.|+........ ......+|+|+|++.+...... ..+...++++|||||||++-..+.. .....++
T Consensus 223 f---~l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l 299 (968)
T 3dmq_A 223 F---NLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAI 299 (968)
T ss_dssp S---CCCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHH
T ss_pred h---CCCEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHH
Confidence 2 666666655432221111 1112468999999988543221 1233457899999999999654421 1223334
Q ss_pred HHhhhhhcccCCCCceEEEEeeccC
Q 015712 316 NPLKDSALKSNGQGFQTILVTAAIA 340 (402)
Q Consensus 316 ~~l~~~~~~~~~~~~q~i~~SATl~ 340 (402)
..+.. ...+++++|||.-
T Consensus 300 ~~L~~-------~~~~~L~LTATPi 317 (968)
T 3dmq_A 300 EQLAE-------HVPGVLLLTATPE 317 (968)
T ss_dssp HHHHT-------TCSSEEESCSSCS
T ss_pred HHHhh-------cCCcEEEEEcCCc
Confidence 44421 2457999999984
No 78
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.41 E-value=2.9e-12 Score=135.15 Aligned_cols=160 Identities=18% Similarity=0.239 Sum_probs=109.5
Q ss_pred CCcHHHHHHHHHHH---------cCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHH
Q 015712 163 VPSEIQCVGIPAVL---------NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGF 233 (402)
Q Consensus 163 ~pt~iQ~~~i~~il---------~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~ 233 (402)
.++|+|.+++..+. .+...|+..+||+|||+..+..+...+...... .+...++|||||+ .|+.|..
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~---~p~~~~~LiV~P~-sll~qW~ 130 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDC---KPEIDKVIVVSPS-SLVRNWY 130 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTS---SCSCSCEEEEECH-HHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccc---cCCCCcEEEEecH-HHHHHHH
Confidence 68999999998874 456799999999999998766665544432110 1234579999997 7888888
Q ss_pred HHHHHhhccCCcceeeccCCCChHHHH---HHhc-----CCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccC
Q 015712 234 HMAKFISHCARLDSSMENGGVSSKALE---DVSN-----APIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDR 305 (402)
Q Consensus 234 ~~~~~l~~~~~~~v~~~~gg~~~~~~~---~~l~-----~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~ 305 (402)
+.+..+... .+.+..++||....... ..+. ...+|+|+|++.+..... .+....+++||+||||++-+.
T Consensus 131 ~E~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~--~l~~~~~~~vI~DEaH~ikn~ 207 (644)
T 1z3i_X 131 NEVGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE--VLHKGKVGLVICDEGHRLKNS 207 (644)
T ss_dssp HHHHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT--TTTTSCCCEEEETTGGGCCTT
T ss_pred HHHHHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH--HhhcCCccEEEEECceecCCh
Confidence 888777544 45666666665432211 1111 147899999999876543 334457889999999998543
Q ss_pred CCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccC
Q 015712 306 GFGPEISKILNPLKDSALKSNGQGFQTILVTAAIA 340 (402)
Q Consensus 306 gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~ 340 (402)
.......+..+. ....+++|||.-
T Consensus 208 --~~~~~~al~~l~---------~~~rl~LTgTPi 231 (644)
T 1z3i_X 208 --DNQTYLALNSMN---------AQRRVLISGTPI 231 (644)
T ss_dssp --CHHHHHHHHHHC---------CSEEEEECSSCS
T ss_pred --hhHHHHHHHhcc---------cCcEEEEecCcc
Confidence 334444555553 457899999974
No 79
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.40 E-value=1.3e-12 Score=141.22 Aligned_cols=154 Identities=16% Similarity=0.190 Sum_probs=110.3
Q ss_pred CCcHHHHHHHHHHH----cCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHH
Q 015712 163 VPSEIQCVGIPAVL----NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 238 (402)
Q Consensus 163 ~pt~iQ~~~i~~il----~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~ 238 (402)
.++|+|..++..++ .|++.|++.+||.|||+..+..+...+.... ....+||||| ..|+.|..+.+..
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~-------~~~~~LIV~P-~sll~qW~~E~~~ 307 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARR-------QNGPHIIVVP-LSTMPAWLDTFEK 307 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHS-------CCSCEEEECC-TTTHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcC-------CCCCEEEEEC-chHHHHHHHHHHH
Confidence 78999999998765 7889999999999999987555544443321 3456899999 6788888887777
Q ss_pred hhccCCcceeeccCCCChHHHHHH------------hcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCC
Q 015712 239 ISHCARLDSSMENGGVSSKALEDV------------SNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRG 306 (402)
Q Consensus 239 l~~~~~~~v~~~~gg~~~~~~~~~------------l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~g 306 (402)
+. .++++.+++|+......... ....++|+|+|++.+...... +....+++|||||||++-+.
T Consensus 308 ~~--p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~lkn~- 382 (800)
T 3mwy_W 308 WA--PDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRLKNA- 382 (800)
T ss_dssp HS--TTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGGCCS-
T ss_pred HC--CCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhhcCc-
Confidence 64 36778888877655443322 123578999999999765432 22236789999999998433
Q ss_pred CHHHHHHHHHHhhhhhcccCCCCceEEEEeecc
Q 015712 307 FGPEISKILNPLKDSALKSNGQGFQTILVTAAI 339 (402)
Q Consensus 307 f~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl 339 (402)
.......+..+. ....+++|||.
T Consensus 383 -~s~~~~~l~~l~---------~~~rl~LTgTP 405 (800)
T 3mwy_W 383 -ESSLYESLNSFK---------VANRMLITGTP 405 (800)
T ss_dssp -SSHHHHHHTTSE---------EEEEEEECSCC
T ss_pred -hhHHHHHHHHhh---------hccEEEeeCCc
Confidence 334555555553 35679999997
No 80
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.39 E-value=7.3e-13 Score=138.95 Aligned_cols=81 Identities=20% Similarity=0.238 Sum_probs=66.8
Q ss_pred CCcHHHHHHHH----HHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHH
Q 015712 163 VPSEIQCVGIP----AVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 238 (402)
Q Consensus 163 ~pt~iQ~~~i~----~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~ 238 (402)
.|++.|.+.+. ++..|+++++.||||+|||++|++|++..+.. .+.+++|++||++|+.|+.+.+..
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~---------~~~kvli~t~T~~l~~Qi~~el~~ 73 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSE---------RKLKVLYLVRTNSQEEQVIKELRS 73 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHH---------HTCEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhh---------cCCeEEEECCCHHHHHHHHHHHHH
Confidence 68999998875 45679999999999999999999999998865 367999999999999999999988
Q ss_pred hhccCCcceeeccC
Q 015712 239 ISHCARLDSSMENG 252 (402)
Q Consensus 239 l~~~~~~~v~~~~g 252 (402)
+....++++..+.|
T Consensus 74 l~~~~~~~~~~l~g 87 (620)
T 4a15_A 74 LSSTMKIRAIPMQG 87 (620)
T ss_dssp HHHHSCCCEEECCC
T ss_pred HhhccCeEEEEEEC
Confidence 87655665544433
No 81
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.31 E-value=1.2e-11 Score=129.03 Aligned_cols=130 Identities=19% Similarity=0.236 Sum_probs=105.0
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHH
Q 015712 159 MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 238 (402)
Q Consensus 159 ~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~ 238 (402)
+|. +|+++|..+.-++..|+ |....||+|||+++.+|++-..+. |..+.|++||++||.|-+.++..
T Consensus 72 lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~----------G~~vhVvT~ndyLA~rdae~m~~ 138 (822)
T 3jux_A 72 LGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALI----------GKGVHLVTVNDYLARRDALWMGP 138 (822)
T ss_dssp TSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTT----------SSCEEEEESSHHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhc----------CCceEEEeccHHHHHhHHHHHHH
Confidence 577 89999999999999988 999999999999999999866553 67899999999999999999999
Q ss_pred hhccCCcceeeccC--------------------------------------------------CCChHHHHHHhcCCcc
Q 015712 239 ISHCARLDSSMENG--------------------------------------------------GVSSKALEDVSNAPIG 268 (402)
Q Consensus 239 l~~~~~~~v~~~~g--------------------------------------------------g~~~~~~~~~l~~~~~ 268 (402)
+..++|++|++++. +.+...+...+ .||
T Consensus 139 l~~~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY--~~D 216 (822)
T 3jux_A 139 VYLFLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAY--LCD 216 (822)
T ss_dssp HHHHTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHH--HSS
T ss_pred HHHHhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHh--cCC
Confidence 99999999998887 22333333333 379
Q ss_pred EEEeCchhh-HHHhhcC------CCCCCCeeEEEEcCCCccc
Q 015712 269 MLIATPSEV-LQHIEDR------NVSCDDIRYVVLDEADTLF 303 (402)
Q Consensus 269 IlV~TP~~l-~~~l~~~------~~~l~~l~~lVlDEad~~l 303 (402)
|..||..-| .+.|+.+ ....+.+.|.||||+|.+|
T Consensus 217 ItYgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiL 258 (822)
T 3jux_A 217 VTYGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVL 258 (822)
T ss_dssp EEEEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHH
T ss_pred CEEccCcchhhHhHHhhccCCHHHhccCCCCeEEEeccccee
Confidence 999999876 3444432 1234678999999999864
No 82
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=99.11 E-value=2e-10 Score=120.19 Aligned_cols=157 Identities=18% Similarity=0.246 Sum_probs=96.9
Q ss_pred HHHHHHHC-CCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChh--hHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHH
Q 015712 152 MIKAVEKM-GLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRT--LAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEES 228 (402)
Q Consensus 152 l~~~l~~~-g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKT--la~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreL 228 (402)
+...|... +-..-+++|+.+++.++.++++++.|++||||| ++++++++..+.. ..+.++++++||..+
T Consensus 137 ~~~~l~~~~~~~~~~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~--------~~~~~vll~APTg~A 208 (608)
T 1w36_D 137 LAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD--------GERCRIRLAAPTGKA 208 (608)
T ss_dssp HHHHHHTTCCCTTSCCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS--------SCCCCEEEEBSSHHH
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh--------cCCCeEEEEeCChhH
Confidence 44445543 112237899999999999999999999999999 5677777765421 146789999999999
Q ss_pred HHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcCCcc-EEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCCC
Q 015712 229 ADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIG-MLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGF 307 (402)
Q Consensus 229 a~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~-IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~gf 307 (402)
|.++...+.......++...... +.... ....+ ++-.+|+.. . +.........+++||||||+ |++
T Consensus 209 A~~L~e~~~~~~~~l~l~~~~~~-~~~~~------~~Tih~ll~~~~~~~-~-~~~~~~~~l~~d~lIIDEAs-ml~--- 275 (608)
T 1w36_D 209 AARLTESLGKALRQLPLTDEQKK-RIPED------ASTLHRLLGAQPGSQ-R-LRHHAGNPLHLDVLVVDEAS-MID--- 275 (608)
T ss_dssp HHHHHHHHTHHHHHSSCCSCCCC-SCSCC------CBTTTSCC-------------CTTSCCSCSEEEECSGG-GCB---
T ss_pred HHHHHHHHHHHHhcCCCCHHHHh-ccchh------hhhhHhhhccCCCch-H-HHhccCCCCCCCEEEEechh-hCC---
Confidence 99998877766555444322110 00000 00011 222233221 1 11111222378999999999 654
Q ss_pred HHHHHHHHHHhhhhhcccCCCCceEEEEee
Q 015712 308 GPEISKILNPLKDSALKSNGQGFQTILVTA 337 (402)
Q Consensus 308 ~~~i~~il~~l~~~~~~~~~~~~q~i~~SA 337 (402)
...+..|+..++ .+.|+|++.-
T Consensus 276 ~~~~~~Ll~~l~--------~~~~liLvGD 297 (608)
T 1w36_D 276 LPMMSRLIDALP--------DHARVIFLGD 297 (608)
T ss_dssp HHHHHHHHHTCC--------TTCEEEEEEC
T ss_pred HHHHHHHHHhCC--------CCCEEEEEcc
Confidence 567778888775 4689999864
No 83
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.18 E-value=9.2e-06 Score=81.92 Aligned_cols=71 Identities=17% Similarity=0.119 Sum_probs=51.4
Q ss_pred HHCCCCCCcHHHHHHHHHHHc----CC-cEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHH
Q 015712 157 EKMGLFVPSEIQCVGIPAVLN----GK-SVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQ 231 (402)
Q Consensus 157 ~~~g~~~pt~iQ~~~i~~il~----g~-dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Q 231 (402)
.-+.|..+++-|+.++..++. +. .+++.|+.|||||... ..++..+... ....+++++||...|..
T Consensus 19 ~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~--------~~~~il~~a~T~~Aa~~ 89 (459)
T 3upu_A 19 SHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALIST--------GETGIILAAPTHAAKKI 89 (459)
T ss_dssp --CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHT--------TCCCEEEEESSHHHHHH
T ss_pred CCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhc--------CCceEEEecCcHHHHHH
Confidence 345688899999999987653 23 8999999999999643 4555555542 12479999999988876
Q ss_pred HHHHH
Q 015712 232 GFHMA 236 (402)
Q Consensus 232 i~~~~ 236 (402)
+...+
T Consensus 90 l~~~~ 94 (459)
T 3upu_A 90 LSKLS 94 (459)
T ss_dssp HHHHH
T ss_pred HHhhh
Confidence 65433
No 84
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.18 E-value=1.1e-05 Score=83.61 Aligned_cols=62 Identities=18% Similarity=0.172 Sum_probs=50.6
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHH
Q 015712 163 VPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFH 234 (402)
Q Consensus 163 ~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~ 234 (402)
.+++.|..++..++.++.+++.|+.|||||... ..++..+.. .+.++++++||...|..+..
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i-~~l~~~l~~---------~g~~Vl~~ApT~~Aa~~L~e 250 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTT-KAVADLAES---------LGLEVGLCAPTGKAARRLGE 250 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHH-HHHHHHHHH---------TTCCEEEEESSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHH-HHHHHHHHh---------cCCeEEEecCcHHHHHHhHh
Confidence 689999999999999999999999999999753 344444443 46789999999998887654
No 85
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.07 E-value=2.5e-05 Score=81.88 Aligned_cols=70 Identities=19% Similarity=0.176 Sum_probs=55.2
Q ss_pred CCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHh
Q 015712 161 LFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 239 (402)
Q Consensus 161 ~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l 239 (402)
+..+++.|..|+..++.+.-++|.||+|||||.... .++..+... .+.++++++||...+.++...+...
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~-~~i~~l~~~--------~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLARQ--------GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHH-HHHHHHHTS--------SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHH-HHHHHHHHc--------CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 456789999999999887889999999999998643 344444431 3668999999999999988776543
No 86
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.06 E-value=1.2e-05 Score=84.67 Aligned_cols=67 Identities=10% Similarity=0.129 Sum_probs=52.2
Q ss_pred CCcHHHHHHHHHHHcCCc-EEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHh
Q 015712 163 VPSEIQCVGIPAVLNGKS-VVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 239 (402)
Q Consensus 163 ~pt~iQ~~~i~~il~g~d-vli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l 239 (402)
.+.+-|.+|+..++..++ .||+||.|||||.+.+- ++..+.. .+.++|+++||..-|.++...+...
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~-~I~~l~~---------~~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVE-IILQAVK---------QGLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHH-HHHHHHH---------TTCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHH-HHHHHHh---------CCCeEEEEcCchHHHHHHHHHHHhc
Confidence 467899999999887665 69999999999987543 3444443 3678999999999998887766543
No 87
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.97 E-value=4.7e-05 Score=81.92 Aligned_cols=70 Identities=16% Similarity=0.182 Sum_probs=55.4
Q ss_pred CCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHh
Q 015712 161 LFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 239 (402)
Q Consensus 161 ~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l 239 (402)
+..+++.|..|+..++.+.-++|.||.|||||.... .++..+... .+.++|+++||...|.++...+...
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~-~~i~~l~~~--------~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSA-TIVYHLSKI--------HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHH-HHHHHHHHH--------HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH-HHHHHHHhC--------CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 456789999999999887778999999999998653 334444332 2568999999999999988877664
No 88
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.89 E-value=6.8e-05 Score=80.59 Aligned_cols=70 Identities=19% Similarity=0.176 Sum_probs=55.1
Q ss_pred CCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHh
Q 015712 161 LFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 239 (402)
Q Consensus 161 ~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l 239 (402)
...+++.|..|+..++.+.-++|.||.|||||... ..++..+... .+.++++++||..-|.++...+...
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti-~~~i~~l~~~--------~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTS-ATIVYHLARQ--------GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHH-HHHHHHHHTT--------CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHH-HHHHHHHHHc--------CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 34678999999999988888999999999999864 3444444431 3568999999999999887776543
No 89
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.59 E-value=0.00041 Score=68.14 Aligned_cols=72 Identities=10% Similarity=0.007 Sum_probs=57.3
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhcc
Q 015712 163 VPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHC 242 (402)
Q Consensus 163 ~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~ 242 (402)
.++|+|...+..+...+-+++..+-+.|||.+.+..++..+... .+..+++++||++.|..++..+..+...
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~--------~g~~v~~vA~t~~qA~~vf~~i~~mi~~ 234 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN--------KDKAVGILAHKGSMSAEVLDRTKQAIEL 234 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSS--------SSCEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhC--------CCCeEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 78999999998776557789999999999998766666544431 3668999999999999888877766544
No 90
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.38 E-value=0.0017 Score=67.37 Aligned_cols=73 Identities=10% Similarity=0.001 Sum_probs=58.4
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhcc
Q 015712 163 VPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHC 242 (402)
Q Consensus 163 ~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~ 242 (402)
.++|+|...+..+...+-+++..+-|+|||.+...-++..+... .+..+++++||++.|..++..+..+...
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~--------~~~~i~~va~t~~qA~~~~~~i~~~i~~ 234 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN--------KDKAVGILAHKGSMSAEVLDRTKQAIEL 234 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTS--------SSCEEEEEESSHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhC--------CCCeEEEEECCHHHHHHHHHHHHHHHHh
Confidence 68999999998875567899999999999998766555555432 3568999999999999988888776654
Q ss_pred C
Q 015712 243 A 243 (402)
Q Consensus 243 ~ 243 (402)
.
T Consensus 235 ~ 235 (592)
T 3cpe_A 235 L 235 (592)
T ss_dssp S
T ss_pred C
Confidence 4
No 91
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.23 E-value=0.0014 Score=56.64 Aligned_cols=19 Identities=26% Similarity=0.478 Sum_probs=16.4
Q ss_pred cCCcEEEEcCCCCChhhHh
Q 015712 177 NGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~ 195 (402)
.|+.+++.||+|+|||...
T Consensus 37 ~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp GCCEEEECCSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4788999999999999754
No 92
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=97.18 E-value=0.00099 Score=70.17 Aligned_cols=68 Identities=24% Similarity=0.259 Sum_probs=52.4
Q ss_pred CCCCCCcHHHHHHHHHHHc----CC-cEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHH
Q 015712 159 MGLFVPSEIQCVGIPAVLN----GK-SVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGF 233 (402)
Q Consensus 159 ~g~~~pt~iQ~~~i~~il~----g~-dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~ 233 (402)
.|| .|++.|..+|..+.. |. ..++.+.||||||++++- ++..+ +..+|||+|+..+|.|++
T Consensus 5 ~~~-~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a~-~~~~~------------~~~~lvv~~~~~~A~ql~ 70 (664)
T 1c4o_A 5 RGP-SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAK-VIEAL------------GRPALVLAPNKILAAQLA 70 (664)
T ss_dssp CSC-CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHH------------TCCEEEEESSHHHHHHHH
T ss_pred CCC-CCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHHH-HHHHh------------CCCEEEEecCHHHHHHHH
Confidence 367 899999999886553 43 477889999999987643 22322 224999999999999999
Q ss_pred HHHHHhh
Q 015712 234 HMAKFIS 240 (402)
Q Consensus 234 ~~~~~l~ 240 (402)
..+..+.
T Consensus 71 ~el~~~~ 77 (664)
T 1c4o_A 71 AEFRELF 77 (664)
T ss_dssp HHHHHHC
T ss_pred HHHHHHC
Confidence 9999885
No 93
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.16 E-value=0.0011 Score=55.95 Aligned_cols=18 Identities=17% Similarity=0.412 Sum_probs=16.2
Q ss_pred cCCcEEEEcCCCCChhhH
Q 015712 177 NGKSVVLSSGSGSGRTLA 194 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla 194 (402)
.|..+++.|++|+|||..
T Consensus 35 ~g~~~~l~G~~G~GKTtL 52 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHL 52 (149)
T ss_dssp CCSEEEEESSSTTTTCHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 678899999999999975
No 94
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.76 E-value=0.013 Score=51.18 Aligned_cols=40 Identities=23% Similarity=0.228 Sum_probs=27.1
Q ss_pred cCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCch
Q 015712 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTE 226 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~Ptr 226 (402)
.|+=.++.|+.|+|||...+-- +..+.. .+.+++++.|..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~-~~~~~~---------~g~~v~~~~~~~ 41 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSF-VEIYKL---------GKKKVAVFKPKI 41 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHH-HHHHHH---------TTCEEEEEEEC-
T ss_pred ccEEEEEECCCCCCHHHHHHHH-HHHHHH---------CCCeEEEEeecc
Confidence 3566789999999999875433 333332 356788888873
No 95
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=96.45 E-value=0.0053 Score=63.98 Aligned_cols=71 Identities=14% Similarity=0.145 Sum_probs=53.2
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhh
Q 015712 162 FVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 240 (402)
Q Consensus 162 ~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~ 240 (402)
..+++-|.+++.. .+..++|.|+.|||||.+.+-=+...+.... ....++|++++|+..+.++...+..+.
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~------~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVEN------CSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSC------CCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCC------CChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 4689999999973 3567999999999999876544444443211 123589999999999999988887653
No 96
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.40 E-value=0.01 Score=53.64 Aligned_cols=91 Identities=13% Similarity=0.153 Sum_probs=52.3
Q ss_pred cCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCCh
Q 015712 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSS 256 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~ 256 (402)
.|.=+++.|++|+|||.+.+-- +..+.. .+.+++|+.|...-- - ...+....++..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~-~~r~~~---------~g~kVli~~~~~d~r-~----~~~i~srlG~~~--------- 66 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRR-LHRLEY---------ADVKYLVFKPKIDTR-S----IRNIQSRTGTSL--------- 66 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHH-HHHHHH---------TTCCEEEEEECCCGG-G----CSSCCCCCCCSS---------
T ss_pred CcEEEEEECCCCCcHHHHHHHH-HHHHHh---------cCCEEEEEEeccCch-H----HHHHHHhcCCCc---------
Confidence 4566889999999999875433 333333 466888887754210 0 001111111110
Q ss_pred HHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCcc
Q 015712 257 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 302 (402)
Q Consensus 257 ~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~ 302 (402)
..+-+.+...+++.+.... .-...++|||||++.+
T Consensus 67 ----------~~~~~~~~~~i~~~i~~~~-~~~~~dvViIDEaQ~l 101 (223)
T 2b8t_A 67 ----------PSVEVESAPEILNYIMSNS-FNDETKVIGIDEVQFF 101 (223)
T ss_dssp ----------CCEEESSTHHHHHHHHSTT-SCTTCCEEEECSGGGS
T ss_pred ----------cccccCCHHHHHHHHHHHh-hCCCCCEEEEecCccC
Confidence 1234566667777766432 2245789999999864
No 97
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.37 E-value=0.0088 Score=59.54 Aligned_cols=87 Identities=15% Similarity=0.165 Sum_probs=52.0
Q ss_pred cEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHH
Q 015712 180 SVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259 (402)
Q Consensus 180 dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~ 259 (402)
=.++.|+.|+|||.... +.+ . ....+|++||++++..+.+.+... +..
T Consensus 163 v~~I~G~aGsGKTt~I~----~~~-~----------~~~~lVlTpT~~aa~~l~~kl~~~----~~~------------- 210 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEIL----SRV-N----------FEEDLILVPGRQAAEMIRRRANAS----GII------------- 210 (446)
T ss_dssp EEEEEECTTSCHHHHHH----HHC-C----------TTTCEEEESCHHHHHHHHHHHTTT----SCC-------------
T ss_pred EEEEEcCCCCCHHHHHH----HHh-c----------cCCeEEEeCCHHHHHHHHHHhhhc----Ccc-------------
Confidence 36899999999998642 211 1 135699999999998877655321 100
Q ss_pred HHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCC
Q 015712 260 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRG 306 (402)
Q Consensus 260 ~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~g 306 (402)
.....-|.|-++++.. ......-..++||||||- |++.+
T Consensus 211 -----~~~~~~V~T~dsfL~~--~~~~~~~~~d~liiDE~s-m~~~~ 249 (446)
T 3vkw_A 211 -----VATKDNVRTVDSFLMN--YGKGARCQFKRLFIDEGL-MLHTG 249 (446)
T ss_dssp -----CCCTTTEEEHHHHHHT--TTSSCCCCCSEEEEETGG-GSCHH
T ss_pred -----ccccceEEEeHHhhcC--CCCCCCCcCCEEEEeCcc-cCCHH
Confidence 0011225676655332 222222347899999997 54444
No 98
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.21 E-value=0.019 Score=54.77 Aligned_cols=28 Identities=11% Similarity=0.064 Sum_probs=20.3
Q ss_pred cCCcEEEEcCCCCChhhHhHHHHHHHHHh
Q 015712 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRR 205 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~~lpil~~l~~ 205 (402)
.+.++++.||+|+|||++. -.++..+..
T Consensus 44 ~~~~lli~GpPGTGKT~~v-~~v~~~L~~ 71 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLV-NDVMDELIT 71 (318)
T ss_dssp CCCEEEEECCCSHHHHHHH-HHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH-HHHHHHHHH
Confidence 3568999999999999764 444555543
No 99
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.20 E-value=0.019 Score=50.53 Aligned_cols=39 Identities=13% Similarity=0.090 Sum_probs=27.6
Q ss_pred CCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCch
Q 015712 178 GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTE 226 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~Ptr 226 (402)
|+=.++.|++|+|||.+.+ -++..+.. .+.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll-~~a~r~~~---------~g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELI-RRIRRAKI---------AKQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHH-HHHHHHHH---------TTCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHH-HHHHHHHH---------CCCEEEEEEecc
Confidence 5557899999999997754 33444333 477899998873
No 100
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.18 E-value=0.0071 Score=54.02 Aligned_cols=19 Identities=26% Similarity=0.200 Sum_probs=16.2
Q ss_pred cCCcEEEEcCCCCChhhHh
Q 015712 177 NGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~ 195 (402)
.+..+++.||+|+|||...
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4678999999999999753
No 101
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.13 E-value=0.018 Score=54.51 Aligned_cols=26 Identities=12% Similarity=0.160 Sum_probs=18.4
Q ss_pred CCcEEEEcCCCCChhhHhHHHHHHHHH
Q 015712 178 GKSVVLSSGSGSGRTLAYLLPLVQMLR 204 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~~lpil~~l~ 204 (402)
+..+++.||+|+|||... -.+...+.
T Consensus 37 ~~~lll~G~~GtGKT~la-~~i~~~~~ 62 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLL-QAAGNEAK 62 (324)
T ss_dssp CSSEEEECSSSSSHHHHH-HHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHH-HHHHHHHH
Confidence 468999999999999753 33344443
No 102
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=96.01 E-value=0.013 Score=61.23 Aligned_cols=113 Identities=19% Similarity=0.292 Sum_probs=74.2
Q ss_pred CCcHHHHHHHHHHHc--CCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhh
Q 015712 163 VPSEIQCVGIPAVLN--GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 240 (402)
Q Consensus 163 ~pt~iQ~~~i~~il~--g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~ 240 (402)
.+|.-|.+++..+.. ..-.++.|+-|.|||.+..+.+-. +. ..++|.+||.+-+..+++....
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~-~~------------~~~~vtAP~~~a~~~l~~~~~~-- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISR-IA------------GRAIVTAPAKASTDVLAQFAGE-- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHH-SS------------SCEEEECSSCCSCHHHHHHHGG--
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHH-HH------------hCcEEECCCHHHHHHHHHHhhC--
Confidence 679999999988876 334799999999999765555433 21 1369999999877655443211
Q ss_pred ccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCCCHHHHHHHHHHhhh
Q 015712 241 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 320 (402)
Q Consensus 241 ~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~~ 320 (402)
.|-+..|..++. .+...++||||||=.+ -.+.+..++..
T Consensus 240 ---------------------------~i~~~~Pd~~~~-------~~~~~dlliVDEAAaI----p~pll~~ll~~--- 278 (671)
T 2zpa_A 240 ---------------------------KFRFIAPDALLA-------SDEQADWLVVDEAAAI----PAPLLHQLVSR--- 278 (671)
T ss_dssp ---------------------------GCCBCCHHHHHH-------SCCCCSEEEEETGGGS----CHHHHHHHHTT---
T ss_pred ---------------------------CeEEeCchhhhh-------CcccCCEEEEEchhcC----CHHHHHHHHhh---
Confidence 022345655432 1345889999999865 35556666542
Q ss_pred hhcccCCCCceEEEEeeccC
Q 015712 321 SALKSNGQGFQTILVTAAIA 340 (402)
Q Consensus 321 ~~~~~~~~~~q~i~~SATl~ 340 (402)
...++||.|+.
T Consensus 279 ---------~~~v~~~tTv~ 289 (671)
T 2zpa_A 279 ---------FPRTLLTTTVQ 289 (671)
T ss_dssp ---------SSEEEEEEEBS
T ss_pred ---------CCeEEEEecCC
Confidence 24577777764
No 103
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=95.96 E-value=0.026 Score=50.58 Aligned_cols=41 Identities=10% Similarity=0.088 Sum_probs=27.4
Q ss_pred cCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchH
Q 015712 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEE 227 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~Ptre 227 (402)
.|.=.++.|+.|+|||...+-- +..+.. .+.+++|+.|...
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~-~~r~~~---------~g~kvli~kp~~D 67 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRR-LRRGIY---------AKQKVVVFKPAID 67 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHH-HHHHHH---------TTCCEEEEEEC--
T ss_pred CceEEEEECCCCCCHHHHHHHH-HHHHHH---------cCCceEEEEeccC
Confidence 3556799999999999765433 344333 4678899988653
No 104
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.91 E-value=0.1 Score=51.85 Aligned_cols=133 Identities=13% Similarity=0.124 Sum_probs=72.1
Q ss_pred CcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEc-Cc-hHHHHHHHHHHHHhhccCCcceeeccCCCCh
Q 015712 179 KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLC-TT-EESADQGFHMAKFISHCARLDSSMENGGVSS 256 (402)
Q Consensus 179 ~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~-Pt-reLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~ 256 (402)
.-++++|++|+|||....--+ ..+.. .+.+++++. .+ |.-+. ..+..++...++.+.....+..
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA-~~l~~---------~G~kVllv~~D~~r~~a~---eqL~~~~~~~gv~~~~~~~~~d- 163 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLA-YFYKK---------RGYKVGLVAADVYRPAAY---DQLLQLGNQIGVQVYGEPNNQN- 163 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHH-HHHHH---------TTCCEEEEEECCSCHHHH---HHHHHHHHTTTCCEECCTTCSC-
T ss_pred eEEEEECCCCCCHHHHHHHHH-HHHHH---------cCCeEEEEecCccchhHH---HHHHHHHHhcCCceeeccccCC-
Confidence 358889999999998643222 22322 345565544 33 33222 2333444444544433222221
Q ss_pred HHHHHHhcCCccEEEeCchhhH-HHhhcCCCCCCCeeEEEEcCCCccc---cCCCHHHHHHHHHHhhhhhcccCCCCceE
Q 015712 257 KALEDVSNAPIGMLIATPSEVL-QHIEDRNVSCDDIRYVVLDEADTLF---DRGFGPEISKILNPLKDSALKSNGQGFQT 332 (402)
Q Consensus 257 ~~~~~~l~~~~~IlV~TP~~l~-~~l~~~~~~l~~l~~lVlDEad~~l---~~gf~~~i~~il~~l~~~~~~~~~~~~q~ 332 (402)
|..+. ..+.. ....+.+++|||.+-++- +..+..++..++..+. ++.-+
T Consensus 164 -----------------p~~i~~~al~~--a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~--------pd~vl 216 (433)
T 3kl4_A 164 -----------------PIEIAKKGVDI--FVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLK--------PDDVI 216 (433)
T ss_dssp -----------------HHHHHHHHHHH--TTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHC--------CSEEE
T ss_pred -----------------HHHHHHHHHHH--HHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhC--------CcceE
Confidence 11111 11221 112467889999987542 3335666666666553 35567
Q ss_pred EEEeeccCchhHHHHHHHhh
Q 015712 333 ILVTAAIAEMLGEQLSSLME 352 (402)
Q Consensus 333 i~~SATl~~~v~~~~~~~l~ 352 (402)
++++|+...+....+..|..
T Consensus 217 LVlDa~~gq~a~~~a~~f~~ 236 (433)
T 3kl4_A 217 LVIDASIGQKAYDLASRFHQ 236 (433)
T ss_dssp EEEEGGGGGGGHHHHHHHHH
T ss_pred EEEeCccchHHHHHHHHHhc
Confidence 78888887777777766663
No 105
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=95.90 E-value=0.0097 Score=62.58 Aligned_cols=70 Identities=13% Similarity=0.037 Sum_probs=52.9
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhh
Q 015712 163 VPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 240 (402)
Q Consensus 163 ~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~ 240 (402)
.+++-|.+++.. .+..++|.|+.|||||.+.+-=+...+.... ....++|+|+.|+..|.++...+..+.
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~------~~~~~IL~lTfT~~Aa~em~~Rl~~~l 71 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCG------YQARHIAAVTFTNKAAREMKERVGQTL 71 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHC------CCGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcC------CCHHHeEEEeccHHHHHHHHHHHHHHc
Confidence 478999999875 3678999999999999876554544444321 134589999999999999988887653
No 106
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.82 E-value=0.03 Score=53.79 Aligned_cols=19 Identities=21% Similarity=0.323 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCCChhhHh
Q 015712 177 NGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~ 195 (402)
.+..+++.||+|+|||...
T Consensus 43 ~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCCEEECBCTTSSHHHHH
T ss_pred CCCcEEEECCCCCCHHHHH
Confidence 3568999999999999753
No 107
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.78 E-value=0.031 Score=50.06 Aligned_cols=40 Identities=18% Similarity=0.150 Sum_probs=26.8
Q ss_pred CCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchH
Q 015712 178 GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEE 227 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~Ptre 227 (402)
|+=.++.|+.|+|||.+.+--+... .. .+.+++|+.|...
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~-~~---------~g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRT-QF---------AKQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHH-HH---------TTCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHH-HH---------CCCEEEEEEeccC
Confidence 4446789999999997754444333 32 4778999998754
No 108
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.76 E-value=0.13 Score=44.73 Aligned_cols=16 Identities=25% Similarity=0.532 Sum_probs=14.1
Q ss_pred CcEEEEcCCCCChhhH
Q 015712 179 KSVVLSSGSGSGRTLA 194 (402)
Q Consensus 179 ~dvli~a~TGsGKTla 194 (402)
..+++.|++|+|||..
T Consensus 39 ~~~ll~G~~G~GKT~l 54 (226)
T 2chg_A 39 PHLLFSGPPGTGKTAT 54 (226)
T ss_dssp CCEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 3699999999999974
No 109
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.70 E-value=0.034 Score=55.38 Aligned_cols=25 Identities=16% Similarity=0.266 Sum_probs=18.0
Q ss_pred CCcEEEEcCCCCChhhHhHHHHHHHH
Q 015712 178 GKSVVLSSGSGSGRTLAYLLPLVQML 203 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~~lpil~~l 203 (402)
+..+++.||+|+|||... -.+...+
T Consensus 130 ~~~lll~Gp~G~GKTtLa-~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLL-QSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHH-HHHHHHH
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHH
Confidence 357999999999999754 3333434
No 110
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.64 E-value=0.053 Score=47.81 Aligned_cols=39 Identities=13% Similarity=0.175 Sum_probs=27.2
Q ss_pred cCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCc
Q 015712 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTT 225 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~Pt 225 (402)
.|+=.++.|+.|+|||...+-.+-.. .. .+.+++|+.|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~-~~---------~~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRF-QI---------AQYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHH-HH---------TTCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHH-HH---------cCCeEEEEccc
Confidence 36668999999999996544443333 32 35789999886
No 111
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=95.62 E-value=0.022 Score=60.51 Aligned_cols=70 Identities=11% Similarity=0.127 Sum_probs=52.7
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHh
Q 015712 162 FVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 239 (402)
Q Consensus 162 ~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l 239 (402)
..+++-|.+++.+ .+..++|.|+.|||||.+..-=+...+.... ....++|+|+.|+..|.++.+.+..+
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~------~~p~~IL~vTFTnkAA~Em~~Rl~~~ 79 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKH------VAPWNILAITFTNKAAREMRERVQSL 79 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTC------CCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcC------CCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 4689999999875 3568999999999999876544444443311 13458999999999999988877665
No 112
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.59 E-value=0.02 Score=53.60 Aligned_cols=18 Identities=17% Similarity=0.342 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCCChhhHh
Q 015712 178 GKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~ 195 (402)
+.++++.||+|+|||...
T Consensus 67 ~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 457999999999999754
No 113
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=95.56 E-value=0.024 Score=59.52 Aligned_cols=65 Identities=22% Similarity=0.272 Sum_probs=49.2
Q ss_pred CCcHHHHHHHHHHH----cCC-cEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHH
Q 015712 163 VPSEIQCVGIPAVL----NGK-SVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK 237 (402)
Q Consensus 163 ~pt~iQ~~~i~~il----~g~-dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~ 237 (402)
.|+..|..+|..+. .|. ..++.+-||||||+++.- ++..+ +..+|||+|+..+|.|.+..++
T Consensus 12 ~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~-~~~~~------------~~~~lvv~~~~~~A~~l~~el~ 78 (661)
T 2d7d_A 12 QPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSN-LIKEV------------NKPTLVIAHNKTLAGQLYSEFK 78 (661)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHH------------CCCEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHH-HHHHh------------CCCEEEEECCHHHHHHHHHHHH
Confidence 68889988887654 343 477889999999986532 22222 2248999999999999999999
Q ss_pred Hhh
Q 015712 238 FIS 240 (402)
Q Consensus 238 ~l~ 240 (402)
.+.
T Consensus 79 ~~~ 81 (661)
T 2d7d_A 79 EFF 81 (661)
T ss_dssp HHC
T ss_pred HHc
Confidence 885
No 114
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.54 E-value=0.12 Score=51.62 Aligned_cols=144 Identities=14% Similarity=0.170 Sum_probs=70.7
Q ss_pred cCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhccCCcceee-ccCCCC
Q 015712 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSM-ENGGVS 255 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~-~~gg~~ 255 (402)
.|.-+++.|++|+|||... +-++..+... .+..++|+.-.-. ..|+...+... ..++...- ..|...
T Consensus 202 ~G~liiI~G~pG~GKTtl~-l~ia~~~~~~--------~g~~Vl~~s~E~s-~~~l~~r~~~~--~~~~~~~~l~~g~l~ 269 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFA-LNIAQNVATK--------TNENVAIFSLEMS-AQQLVMRMLCA--EGNINAQNLRTGKLT 269 (454)
T ss_dssp TTCEEEEECCTTSCHHHHH-HHHHHHHHHH--------SSCCEEEEESSSC-HHHHHHHHHHH--HHTCCHHHHHTSCCC
T ss_pred CCCEEEEECCCCCCHHHHH-HHHHHHHHHh--------CCCcEEEEECCCC-HHHHHHHHHHH--HcCCCHHHHhcCCCC
Confidence 4567999999999999644 4444444321 2446777663321 23333332111 11221111 223333
Q ss_pred hHHHHH------HhcCCccEEEe-----CchhhHHHhhcCCCCCCCeeEEEEcCCCccccCC-----CHHHHHHHHHHhh
Q 015712 256 SKALED------VSNAPIGMLIA-----TPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRG-----FGPEISKILNPLK 319 (402)
Q Consensus 256 ~~~~~~------~l~~~~~IlV~-----TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~g-----f~~~i~~il~~l~ 319 (402)
...... .+.. ..+.+. |.+.+...+..- ..-..+++||||+.+.|...+ ....+..+++.|+
T Consensus 270 ~~~~~~~~~a~~~l~~-~~l~i~d~~~~s~~~i~~~~~~l-~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk 347 (454)
T 2r6a_A 270 PEDWGKLTMAMGSLSN-AGIYIDDTPSIRVSDIRAKCRRL-KQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLK 347 (454)
T ss_dssp HHHHHHHHHHHHHHHS-SCEEEECCTTCCHHHHHHHHHHH-HTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHH-HHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHH
Confidence 222111 1122 235553 334444333321 111358999999999987432 4456666666665
Q ss_pred hhhcccCCCCceEEEEee
Q 015712 320 DSALKSNGQGFQTILVTA 337 (402)
Q Consensus 320 ~~~~~~~~~~~q~i~~SA 337 (402)
..... .++.+|++|-
T Consensus 348 ~lAke---~~i~vi~~sq 362 (454)
T 2r6a_A 348 ALARE---LEVPVIALSQ 362 (454)
T ss_dssp HHHHH---HTCCEEEEEC
T ss_pred HHHHH---hCCeEEEEec
Confidence 32211 2566777665
No 115
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.37 E-value=0.043 Score=49.73 Aligned_cols=40 Identities=13% Similarity=0.181 Sum_probs=28.0
Q ss_pred cCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCch
Q 015712 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTE 226 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~Ptr 226 (402)
.|+=.++.|+.|+|||.+.+--+... .. .+.+++++-|..
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~-~~---------~g~kvli~kp~~ 57 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRF-QI---------AQYKCLVIKYAK 57 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH-HT---------TTCCEEEEEETT
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHH-HH---------CCCeEEEEeecC
Confidence 35667889999999997754444333 22 477889888764
No 116
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.37 E-value=0.054 Score=49.80 Aligned_cols=17 Identities=35% Similarity=0.337 Sum_probs=14.8
Q ss_pred CcEEEEcCCCCChhhHh
Q 015712 179 KSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 179 ~dvli~a~TGsGKTla~ 195 (402)
..+++.||+|+|||...
T Consensus 65 ~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALA 81 (272)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 47999999999999754
No 117
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.37 E-value=0.037 Score=53.29 Aligned_cols=16 Identities=25% Similarity=0.499 Sum_probs=14.4
Q ss_pred cEEEEcCCCCChhhHh
Q 015712 180 SVVLSSGSGSGRTLAY 195 (402)
Q Consensus 180 dvli~a~TGsGKTla~ 195 (402)
.+++.||+|+|||...
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 7999999999999754
No 118
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.31 E-value=0.047 Score=50.40 Aligned_cols=54 Identities=15% Similarity=0.240 Sum_probs=32.2
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHH--HHcCCcEEEEcCCCCChhhHh
Q 015712 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPA--VLNGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~--il~g~dvli~a~TGsGKTla~ 195 (402)
..+|+++.-.+..++.|.+.=. .+. .....+.. +..++.+++.||+|+|||...
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~-~~~-~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVE-LPL-KHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTH-HHH-HCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHH-HHh-hCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 4568888877777777665311 000 00111111 124578999999999999753
No 119
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.20 E-value=0.046 Score=51.59 Aligned_cols=15 Identities=27% Similarity=0.268 Sum_probs=12.7
Q ss_pred CCeeEEEEcCCCccc
Q 015712 289 DDIRYVVLDEADTLF 303 (402)
Q Consensus 289 ~~l~~lVlDEad~~l 303 (402)
...++|||||+|.+.
T Consensus 104 ~~~~vliiDEi~~l~ 118 (324)
T 3u61_B 104 GRQKVIVIDEFDRSG 118 (324)
T ss_dssp SCEEEEEEESCCCGG
T ss_pred CCCeEEEEECCcccC
Confidence 467899999999884
No 120
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.12 E-value=0.2 Score=47.68 Aligned_cols=40 Identities=13% Similarity=0.149 Sum_probs=27.5
Q ss_pred CcHHHHHHHHHHH----cCC---cEEEEcCCCCChhhHhHHHHHHHHH
Q 015712 164 PSEIQCVGIPAVL----NGK---SVVLSSGSGSGRTLAYLLPLVQMLR 204 (402)
Q Consensus 164 pt~iQ~~~i~~il----~g~---dvli~a~TGsGKTla~~lpil~~l~ 204 (402)
.+|||..++..+. .|+ .+++.||.|+|||... ..+...+.
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a-~~la~~l~ 49 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALI-YALSRYLL 49 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHH-HHHHHHHT
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHH-HHHHHHHh
Confidence 4688888876653 444 4899999999999754 34444443
No 121
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=95.10 E-value=0.15 Score=43.08 Aligned_cols=74 Identities=20% Similarity=0.281 Sum_probs=57.4
Q ss_pred CCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHh----cCCccEEEeCchhhHHHhhcCCCCCCCe
Q 015712 216 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDDI 291 (402)
Q Consensus 216 ~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~l~~~l~~~~~~l~~l 291 (402)
+.++||.|+++..+..+...+... ++.+..++|+.+...+...+ .....|||+|. +-..++++.++
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gld~~~~ 104 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD------VAARGIDIENI 104 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG------GGTTTCCCSCC
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC------hhhcCCchhcC
Confidence 568999999999999988888764 67899999998877665443 34678999993 22457888899
Q ss_pred eEEEEcCC
Q 015712 292 RYVVLDEA 299 (402)
Q Consensus 292 ~~lVlDEa 299 (402)
+++|.-+.
T Consensus 105 ~~Vi~~~~ 112 (163)
T 2hjv_A 105 SLVINYDL 112 (163)
T ss_dssp SEEEESSC
T ss_pred CEEEEeCC
Confidence 99887443
No 122
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.07 E-value=0.038 Score=53.22 Aligned_cols=25 Identities=16% Similarity=0.190 Sum_probs=18.0
Q ss_pred CCcEEEEcCCCCChhhHhHHHHHHHH
Q 015712 178 GKSVVLSSGSGSGRTLAYLLPLVQML 203 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~~lpil~~l 203 (402)
++.+++.||+|+|||... -.+...+
T Consensus 45 ~~~vll~G~~G~GKT~la-~~l~~~~ 69 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVS-KYIFNEI 69 (384)
T ss_dssp CCEEEEEECTTSSHHHHH-HHHHHHH
T ss_pred CCcEEEECCCCCCHHHHH-HHHHHHH
Confidence 357999999999999754 3334444
No 123
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.04 E-value=0.44 Score=41.61 Aligned_cols=16 Identities=25% Similarity=0.364 Sum_probs=14.0
Q ss_pred cEEEEcCCCCChhhHh
Q 015712 180 SVVLSSGSGSGRTLAY 195 (402)
Q Consensus 180 dvli~a~TGsGKTla~ 195 (402)
.+++.|++|+|||...
T Consensus 47 ~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA 62 (250)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6899999999999753
No 124
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.03 E-value=0.12 Score=51.42 Aligned_cols=144 Identities=18% Similarity=0.160 Sum_probs=69.6
Q ss_pred cCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhccCCcceee-ccCCCC
Q 015712 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSM-ENGGVS 255 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~-~~gg~~ 255 (402)
.|.-+++.|++|+|||. |++-++..+... .+..++|+.-- .-..|+...+... ..++...- ..|..+
T Consensus 199 ~G~l~ii~G~pg~GKT~-lal~ia~~~a~~--------~g~~vl~~slE-~~~~~l~~R~~~~--~~~i~~~~l~~g~l~ 266 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTA-FALTIAQNAALK--------EGVGVGIYSLE-MPAAQLTLRMMCS--EARIDMNRVRLGQLT 266 (444)
T ss_dssp TTCEEEEEECTTSCHHH-HHHHHHHHHHHT--------TCCCEEEEESS-SCHHHHHHHHHHH--HTTCCTTTCCGGGCC
T ss_pred CCcEEEEEeCCCCCHHH-HHHHHHHHHHHh--------CCCeEEEEECC-CCHHHHHHHHHHH--HcCCCHHHHhCCCCC
Confidence 34568999999999996 444444444321 24457776542 2223433332211 11222111 123233
Q ss_pred hHHHHH------HhcCCccEEEe-----CchhhHHHhhcCCCCCCCeeEEEEcCCCccccC--C-----CHHHHHHHHHH
Q 015712 256 SKALED------VSNAPIGMLIA-----TPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDR--G-----FGPEISKILNP 317 (402)
Q Consensus 256 ~~~~~~------~l~~~~~IlV~-----TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~--g-----f~~~i~~il~~ 317 (402)
...... .+.. ..+.|. |+..+...+.+-. .-..+++||||.++.|... + ....+..+++.
T Consensus 267 ~~~~~~~~~a~~~l~~-~~l~i~d~~~~s~~~l~~~~~~l~-~~~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~ 344 (444)
T 2q6t_A 267 DRDFSRLVDVASRLSE-APIYIDDTPDLTLMEVRARARRLV-SQNQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRG 344 (444)
T ss_dssp HHHHHHHHHHHHHHHT-SCEEEECCTTCBHHHHHHHHHHHH-HHSCCCEEEEECGGGCBCC-------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHH-HHcCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHH
Confidence 222111 1222 235543 3334433332210 0125889999999988754 2 23345666666
Q ss_pred hhhhhcccCCCCceEEEEee
Q 015712 318 LKDSALKSNGQGFQTILVTA 337 (402)
Q Consensus 318 l~~~~~~~~~~~~q~i~~SA 337 (402)
|+..... .++.+|++|-
T Consensus 345 Lk~lAke---~~v~vi~lsq 361 (444)
T 2q6t_A 345 LKALARE---LGIPIIALSQ 361 (444)
T ss_dssp HHHHHHH---HTSCEEEEEE
T ss_pred HHHHHHH---hCCeEEEEec
Confidence 6532211 2567777765
No 125
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.03 E-value=0.057 Score=51.84 Aligned_cols=145 Identities=14% Similarity=0.132 Sum_probs=69.8
Q ss_pred cCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhccCCccee-eccCCCC
Q 015712 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSS-MENGGVS 255 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~-~~~gg~~ 255 (402)
.|.-+++.|++|+|||.. ++-++..+.. .+..++|++-- .-..|+...+-.... ++... +..|..+
T Consensus 45 ~G~LiiIaG~pG~GKTt~-al~ia~~~a~---------~g~~Vl~fSlE-ms~~ql~~Rlls~~~--~v~~~~l~~g~Ls 111 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSL-MMNMVLSALN---------DDRGVAVFSLE-MSAEQLALRALSDLT--SINMHDLESGRLD 111 (338)
T ss_dssp TTCEEEEEECTTSCHHHH-HHHHHHHHHH---------TTCEEEEEESS-SCHHHHHHHHHHHHH--CCCHHHHHHTCCC
T ss_pred CCcEEEEEeCCCCCHHHH-HHHHHHHHHH---------cCCeEEEEeCC-CCHHHHHHHHHHHhh--CCCHHHHhcCCCC
Confidence 455689999999999964 4444444333 25567777642 223444333322111 22211 1123333
Q ss_pred hHHHHH------HhcCCccEEE-eCch----hhHHHhhcCCCCCCCeeEEEEcCCCccccCC----CHHHHHHHHHHhhh
Q 015712 256 SKALED------VSNAPIGMLI-ATPS----EVLQHIEDRNVSCDDIRYVVLDEADTLFDRG----FGPEISKILNPLKD 320 (402)
Q Consensus 256 ~~~~~~------~l~~~~~IlV-~TP~----~l~~~l~~~~~~l~~l~~lVlDEad~~l~~g----f~~~i~~il~~l~~ 320 (402)
..+..+ .+.. ..|.| .+|+ .|...+++-.-....+++||||-.+.|...+ ...++..|.+.|+.
T Consensus 112 ~~e~~~l~~a~~~l~~-~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDyLqlm~~~~~~~~r~~ei~~isr~LK~ 190 (338)
T 4a1f_A 112 DDQWENLAKCFDHLSQ-KKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDYLQLMSGSKATKERHEQIAEISRELKT 190 (338)
T ss_dssp HHHHHHHHHHHHHHHH-SCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEEEECCCTHHHHHHCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc-CCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEechHHhcCCCCCCChHHHHHHHHHHHHH
Confidence 322211 1111 23444 3443 3333332211111269999999999875321 12235555555543
Q ss_pred hhcccCCCCceEEEEeec
Q 015712 321 SALKSNGQGFQTILVTAA 338 (402)
Q Consensus 321 ~~~~~~~~~~q~i~~SAT 338 (402)
... .-++.+|++|-.
T Consensus 191 lAk---el~vpVi~lsQl 205 (338)
T 4a1f_A 191 LAR---ELEIPIIALVQL 205 (338)
T ss_dssp HHH---HHTSCEEEEEEC
T ss_pred HHH---HcCCeEEEEEec
Confidence 221 126778877763
No 126
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.97 E-value=0.13 Score=44.73 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=18.4
Q ss_pred CcEEEEcCCCCChhhHhHHHHHHHHH
Q 015712 179 KSVVLSSGSGSGRTLAYLLPLVQMLR 204 (402)
Q Consensus 179 ~dvli~a~TGsGKTla~~lpil~~l~ 204 (402)
+.+++.|++|+|||... -.+...+.
T Consensus 55 ~~~~l~G~~GtGKT~la-~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL-AAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHH-HHHHHHHH
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHH
Confidence 78999999999999753 34444443
No 127
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=94.96 E-value=0.13 Score=43.82 Aligned_cols=74 Identities=18% Similarity=0.172 Sum_probs=57.5
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHh----cCCccEEEeCchhhHHHhhcCCCCCCC
Q 015712 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDD 290 (402)
Q Consensus 215 ~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~l~~~l~~~~~~l~~ 290 (402)
.+.++||.|+++..+..++..+... ++.+..++|+.+...+...+ ....+|||+|. +-..++++..
T Consensus 33 ~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~------~~~~Gid~~~ 102 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN------VCARGIDVKQ 102 (175)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC------SCCTTTCCTT
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec------chhcCCCccc
Confidence 3568999999999999988877653 67899999999877765443 34678999994 2345788999
Q ss_pred eeEEEEcC
Q 015712 291 IRYVVLDE 298 (402)
Q Consensus 291 l~~lVlDE 298 (402)
+.+||.-+
T Consensus 103 ~~~Vi~~d 110 (175)
T 2rb4_A 103 VTIVVNFD 110 (175)
T ss_dssp EEEEEESS
T ss_pred CCEEEEeC
Confidence 99998643
No 128
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.90 E-value=0.15 Score=48.45 Aligned_cols=43 Identities=14% Similarity=0.202 Sum_probs=27.7
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHh
Q 015712 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 141 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~ 195 (402)
.+|+++--.+.+.+.|...=+.. -...++++.||.|+|||...
T Consensus 11 ~~~~~~vg~~~~~~~l~~~~~~~------------~~~~~~ll~Gp~G~GKTtl~ 53 (354)
T 1sxj_E 11 KSLNALSHNEELTNFLKSLSDQP------------RDLPHLLLYGPNGTGKKTRC 53 (354)
T ss_dssp CSGGGCCSCHHHHHHHHTTTTCT------------TCCCCEEEECSTTSSHHHHH
T ss_pred CCHHHhcCCHHHHHHHHHHHhhC------------CCCCeEEEECCCCCCHHHHH
Confidence 45777666677776665542110 12234999999999999753
No 129
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.86 E-value=0.37 Score=46.80 Aligned_cols=52 Identities=13% Similarity=0.260 Sum_probs=30.2
Q ss_pred ccccccCCCCHHHHHHHHHCCCC---CCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHh
Q 015712 140 VSSFQELGLKAEMIKAVEKMGLF---VPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g~~---~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~ 195 (402)
..+|+++.-...+++.|...-.. .+.-++ .....++.+|+.||+|+|||+..
T Consensus 111 ~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 111 AVKFDDIAGQDLAKQALQEIVILPSLRPELFT----GLRAPARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSC----GGGCCCSEEEEESSTTSCHHHHH
T ss_pred CCChHHhCCHHHHHHHHHHHHHHhccCHHHhc----ccCCCCceEEEECCCCCCHHHHH
Confidence 45688887666766666543210 000000 00013578999999999999754
No 130
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=94.80 E-value=0.038 Score=62.21 Aligned_cols=70 Identities=20% Similarity=0.245 Sum_probs=54.0
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHH
Q 015712 163 VPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 238 (402)
Q Consensus 163 ~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~ 238 (402)
.+|+-|..+|..- +.+++|.|.-|||||.+.+-=++..+..... .....++|+|++|+..|..+...+..
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~----~~~~~~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEEN----PIDVDRLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSS----CCCGGGEEEECSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCC----CCCccceEEEeccHHHHHHHHHHHHH
Confidence 6799999998754 7899999999999998876666665554210 11345899999999999998887765
No 131
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.66 E-value=0.068 Score=45.30 Aligned_cols=25 Identities=28% Similarity=0.298 Sum_probs=18.0
Q ss_pred CCcEEEEcCCCCChhhHhHHHHHHHH
Q 015712 178 GKSVVLSSGSGSGRTLAYLLPLVQML 203 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~~lpil~~l 203 (402)
+..+++.|++|+|||... -.+...+
T Consensus 43 ~~~~ll~G~~G~GKT~l~-~~~~~~~ 67 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIV-EGLAQRI 67 (195)
T ss_dssp SCEEEEECCTTSCHHHHH-HHHHHHH
T ss_pred CCceEEECCCCCCHHHHH-HHHHHHH
Confidence 467999999999999753 3333433
No 132
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.64 E-value=0.37 Score=45.45 Aligned_cols=42 Identities=19% Similarity=0.155 Sum_probs=26.7
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHH----cCCcEEEEcCCCCChhhHh
Q 015712 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVL----NGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 142 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il----~g~dvli~a~TGsGKTla~ 195 (402)
+|+++--.+.+++.+.. ++.... ....+++.||+|+|||...
T Consensus 27 ~~~~iiG~~~~~~~l~~------------~l~~~~~~~~~~~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNV------------FIAAAKKRNECLDHILFSGPAGLGKTTLA 72 (338)
T ss_dssp SGGGCCSCHHHHHHHHH------------HHHHHHHTTSCCCCEEEECSTTSSHHHHH
T ss_pred CHHHhCChHHHHHHHHH------------HHHHHHhcCCCCCeEEEECcCCCCHHHHH
Confidence 67777666666655432 111211 2257999999999999753
No 133
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.64 E-value=0.17 Score=45.79 Aligned_cols=52 Identities=25% Similarity=0.279 Sum_probs=28.6
Q ss_pred cccccCCCCHHHHHHHHHCC--CCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHh
Q 015712 141 SSFQELGLKAEMIKAVEKMG--LFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 141 ~~f~~l~l~~~l~~~l~~~g--~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~ 195 (402)
.+|+++.-.+.+.+.+.+.- +..+..+.... +...+.+++.||+|+|||...
T Consensus 3 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g---~~~~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 3 VSFKDVAGMHEAKLEVREFVDYLKSPERFLQLG---AKVPKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCCC---------CCCCCEEEEESCTTSSHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcC---CCCCceEEEECCCCCCHHHHH
Confidence 45777766666666665420 11111111110 123467999999999999753
No 134
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=94.63 E-value=0.21 Score=43.53 Aligned_cols=73 Identities=12% Similarity=0.205 Sum_probs=56.6
Q ss_pred CCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHh----cCCccEEEeCchhhHHHhhcCCCCCCCe
Q 015712 216 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDDI 291 (402)
Q Consensus 216 ~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~l~~~l~~~~~~l~~l 291 (402)
+.++||.|+++.-+..+...+... ++.+..++|+.+...+...+ .....|||+|. . ...++++.++
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----~-~~~Gldi~~v 123 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD-----V-ASKGLDFPAI 123 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH-----H-HHTTCCCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC-----c-hhcCCCcccC
Confidence 457999999999999988888764 67889999999877665444 24678999993 1 2357888999
Q ss_pred eEEEEcC
Q 015712 292 RYVVLDE 298 (402)
Q Consensus 292 ~~lVlDE 298 (402)
+++|.=+
T Consensus 124 ~~VI~~d 130 (191)
T 2p6n_A 124 QHVINYD 130 (191)
T ss_dssp SEEEESS
T ss_pred CEEEEeC
Confidence 9888733
No 135
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=94.60 E-value=0.21 Score=42.17 Aligned_cols=74 Identities=12% Similarity=0.235 Sum_probs=57.0
Q ss_pred CCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHh----cCCccEEEeCchhhHHHhhcCCCCCCCe
Q 015712 216 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDDI 291 (402)
Q Consensus 216 ~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~l~~~l~~~~~~l~~l 291 (402)
+.++||.|+++..+..+...+... ++.+..++|+.+...+...+ .....|||+|. .-..++++.++
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~G~d~~~~ 99 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD------LLARGIDVQQV 99 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG------GGTTTCCCCSC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC------hhhcCCCcccC
Confidence 568999999999999988877764 67889999998877665443 34678999994 23457888899
Q ss_pred eEEEEcCC
Q 015712 292 RYVVLDEA 299 (402)
Q Consensus 292 ~~lVlDEa 299 (402)
+++|.-+.
T Consensus 100 ~~Vi~~~~ 107 (165)
T 1fuk_A 100 SLVINYDL 107 (165)
T ss_dssp SEEEESSC
T ss_pred CEEEEeCC
Confidence 99887443
No 136
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.56 E-value=0.13 Score=48.47 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=19.1
Q ss_pred CCcEEEEcCCCCChhhHhHHHHHHHHH
Q 015712 178 GKSVVLSSGSGSGRTLAYLLPLVQMLR 204 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~~lpil~~l~ 204 (402)
+.++++.||+|+|||... ..+...+.
T Consensus 152 ~~~lll~G~~GtGKT~La-~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLL-AAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHH-HHHHHHHH
T ss_pred CceEEEECCCCCCHHHHH-HHHHHHHH
Confidence 578999999999999754 33444443
No 137
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.52 E-value=0.13 Score=52.20 Aligned_cols=44 Identities=11% Similarity=0.157 Sum_probs=26.1
Q ss_pred CCeeEEEEcCCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccC
Q 015712 289 DDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIA 340 (402)
Q Consensus 289 ~~l~~lVlDEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~ 340 (402)
..-.+|||||+|.|.... ...+..++..+.. .+..+|+++++..
T Consensus 147 ~~~~vliIDEid~l~~~~-~~~l~~L~~~l~~-------~~~~iIli~~~~~ 190 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGD-RGGVGQLAQFCRK-------TSTPLILICNERN 190 (516)
T ss_dssp TTSEEEEECSGGGCCTTS-TTHHHHHHHHHHH-------CSSCEEEEESCTT
T ss_pred CCCeEEEEECCCccchhh-HHHHHHHHHHHHh-------cCCCEEEEEcCCC
Confidence 345789999999886532 2223334443332 2456777777643
No 138
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.52 E-value=0.23 Score=41.81 Aligned_cols=18 Identities=22% Similarity=0.353 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCCChhhHh
Q 015712 178 GKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~ 195 (402)
+..+++.|++|+|||...
T Consensus 43 ~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp SCEEEEESCGGGCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 467999999999999753
No 139
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=94.49 E-value=0.2 Score=44.33 Aligned_cols=71 Identities=20% Similarity=0.231 Sum_probs=56.5
Q ss_pred CCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHh----cCCccEEEeCchhhHHHhhcCCCCCCCe
Q 015712 216 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDDI 291 (402)
Q Consensus 216 ~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~l~~~l~~~~~~l~~l 291 (402)
+.++||.|+|+.-+..+...+... ++.+..++|+.+...+...+ ....+|+|+|. +-..++++.++
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~------~~~~Gidi~~v 100 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD------VAARGLDIPQV 100 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT------TTTCSSSCCCB
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC------hhhcCCCCccC
Confidence 568999999999999988887764 67889999999887766544 34578999994 23467888999
Q ss_pred eEEEE
Q 015712 292 RYVVL 296 (402)
Q Consensus 292 ~~lVl 296 (402)
++||.
T Consensus 101 ~~Vi~ 105 (212)
T 3eaq_A 101 DLVVH 105 (212)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 98884
No 140
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.49 E-value=0.096 Score=48.78 Aligned_cols=20 Identities=30% Similarity=0.589 Sum_probs=16.6
Q ss_pred HcCCcEEEEcCCCCChhhHh
Q 015712 176 LNGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 176 l~g~dvli~a~TGsGKTla~ 195 (402)
..|.-+++.|++|+|||...
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~ 52 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFV 52 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHH
Confidence 35777999999999999754
No 141
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.41 E-value=0.072 Score=50.93 Aligned_cols=18 Identities=17% Similarity=0.361 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCCChhhHh
Q 015712 178 GKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~ 195 (402)
+..+++.|++|+|||...
T Consensus 45 ~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCEEEEECTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 568999999999999754
No 142
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.38 E-value=0.096 Score=46.84 Aligned_cols=50 Identities=22% Similarity=0.208 Sum_probs=29.9
Q ss_pred cCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHH
Q 015712 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK 237 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~ 237 (402)
.|.-+++.|++|+|||...+ -++..+.. .+..++|+.-. +-..++...+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~-~~~~~~~~---------~~~~v~~~~~e-~~~~~~~~~~~ 71 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQ-QFLWNGLK---------MGEPGIYVALE-EHPVQVRQNMA 71 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHH-HHHHHHHH---------TTCCEEEEESS-SCHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH-HHHHHHHh---------cCCeEEEEEcc-CCHHHHHHHHH
Confidence 46779999999999997543 33333322 24467776533 33445444444
No 143
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.10 E-value=0.96 Score=44.88 Aligned_cols=59 Identities=17% Similarity=0.207 Sum_probs=32.5
Q ss_pred CcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEc--CchHHHHHHHHHHHHhhccCCcceeec
Q 015712 179 KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLC--TTEESADQGFHMAKFISHCARLDSSME 250 (402)
Q Consensus 179 ~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~--PtreLa~Qi~~~~~~l~~~~~~~v~~~ 250 (402)
.-++++|++|+|||.... -+...+.. .+.++++++ |.|.-+. ..+..++...++.+...
T Consensus 101 ~vIlivG~~G~GKTTt~~-kLA~~l~~---------~G~kVllv~~D~~R~aa~---eqL~~~~~~~gvpv~~~ 161 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVA-KLARYFQK---------RGYKVGVVCSDTWRPGAY---HQLRQLLDRYHIEVFGN 161 (443)
T ss_dssp EEEEEECCTTSSHHHHHH-HHHHHHHT---------TTCCEEEEECCCSSTHHH---HHHHHHHGGGTCEEECC
T ss_pred eEEEEECcCCCCHHHHHH-HHHHHHHH---------CCCeEEEEeCCCcchhHH---HHHHHHHHhcCCcEEec
Confidence 358899999999998643 22233332 345565554 3333332 34445555556555443
No 144
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.05 E-value=0.31 Score=42.81 Aligned_cols=19 Identities=26% Similarity=0.499 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCCChhhHh
Q 015712 177 NGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~ 195 (402)
.|.-+++.|++|+|||...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~ 40 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFS 40 (235)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHH
Confidence 4677999999999999654
No 145
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=93.95 E-value=0.34 Score=42.12 Aligned_cols=121 Identities=13% Similarity=0.181 Sum_probs=77.6
Q ss_pred cHHHHHHHHHHHcCC--cEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhcc
Q 015712 165 SEIQCVGIPAVLNGK--SVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHC 242 (402)
Q Consensus 165 t~iQ~~~i~~il~g~--dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~ 242 (402)
.+-|..++..++... -.++.+.-|++|+...+--++..... .|.++.+|+|+..-... +...
T Consensus 36 ~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~---------~Gr~V~vLAp~~~s~~~-------l~~~ 99 (189)
T 2l8b_A 36 TAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMARE---------QGREVQIIAADRRSQMN-------MKQD 99 (189)
T ss_dssp HHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHH---------TTCCEEEECSTTHHHHH-------HSCT
T ss_pred CccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHh---------cCeEEEEEcCchHHHHH-------HHhh
Confidence 356888998887544 57888999999998875555554444 58899999999876554 2222
Q ss_pred CCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCccccCCCHHHHHHHHHHhhhhh
Q 015712 243 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSA 322 (402)
Q Consensus 243 ~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~~~~ 322 (402)
.++.-..+.. ..+......|..=+.+|||||..|. ..++..+++....
T Consensus 100 ~~l~~~t~t~--------------------------~~ll~~~~~~tp~s~lIVD~AekLS----~kE~~~Lld~A~~-- 147 (189)
T 2l8b_A 100 ERLSGELITG--------------------------RRQLLEGMAFTPGSTVIVDQGEKLS----LKETLTLLDGAAR-- 147 (189)
T ss_dssp TTCSSCSSST--------------------------TTTTTTSCCCCCCCEEEEEESSSHH----HHHHHHHHHHHHH--
T ss_pred cCcCcceeeh--------------------------hhhhcCCCCCCCCCEEEEechhhcC----HHHHHHHHHHHHh--
Confidence 2222211110 1111222222333489999999884 6677777776654
Q ss_pred cccCCCCceEEEEeec
Q 015712 323 LKSNGQGFQTILVTAA 338 (402)
Q Consensus 323 ~~~~~~~~q~i~~SAT 338 (402)
.+.|+|++--+
T Consensus 148 -----~naqvvll~~~ 158 (189)
T 2l8b_A 148 -----HNVQVLITDSG 158 (189)
T ss_dssp -----TTCCEEEEESS
T ss_pred -----cCCEEEEeCCc
Confidence 46899988766
No 146
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=93.83 E-value=0.49 Score=44.02 Aligned_cols=16 Identities=25% Similarity=0.459 Sum_probs=14.2
Q ss_pred cEEEEcCCCCChhhHh
Q 015712 180 SVVLSSGSGSGRTLAY 195 (402)
Q Consensus 180 dvli~a~TGsGKTla~ 195 (402)
.+++.||+|+|||...
T Consensus 48 ~~ll~G~~G~GKT~la 63 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAA 63 (327)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred eEEEECcCCCCHHHHH
Confidence 6999999999999753
No 147
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=93.81 E-value=0.96 Score=38.35 Aligned_cols=73 Identities=7% Similarity=0.033 Sum_probs=56.8
Q ss_pred CCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHh----cCCccEEEeCchhhHHHhhcCCCCCCCe
Q 015712 216 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDDI 291 (402)
Q Consensus 216 ~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~l~~~l~~~~~~l~~l 291 (402)
+.++||.|+++.-+..++..+... ++.+..++|+.+...+...+ .....|||+|.- -..++++.++
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~------~~~Gldi~~~ 100 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL------FGRGMDIERV 100 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC------CSTTCCGGGC
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCc------hhcCcchhhC
Confidence 568999999999999988888764 67889999998877665443 346789999942 2457888889
Q ss_pred eEEEEcC
Q 015712 292 RYVVLDE 298 (402)
Q Consensus 292 ~~lVlDE 298 (402)
+++|.-+
T Consensus 101 ~~Vi~~d 107 (172)
T 1t5i_A 101 NIAFNYD 107 (172)
T ss_dssp SEEEESS
T ss_pred CEEEEEC
Confidence 9988744
No 148
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.80 E-value=0.42 Score=45.12 Aligned_cols=17 Identities=18% Similarity=0.385 Sum_probs=14.5
Q ss_pred CcEEEEcCCCCChhhHh
Q 015712 179 KSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 179 ~dvli~a~TGsGKTla~ 195 (402)
.++++.||+|+|||...
T Consensus 59 ~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45999999999999753
No 149
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=93.57 E-value=1.3 Score=46.36 Aligned_cols=78 Identities=12% Similarity=0.141 Sum_probs=61.8
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHh----cCCccEEEeCchhhHHHhhcCCCCCCC
Q 015712 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDD 290 (402)
Q Consensus 215 ~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~l~~~l~~~~~~l~~ 290 (402)
.+.++||.|+|+..+..+...+... ++.+..++|+.+...+...+ ....+|+|||. +-..++++.+
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~------~l~~GlDip~ 513 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN------LLREGLDIPE 513 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC------CCSTTCCCTT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc------hhhCCcccCC
Confidence 3669999999999999988887764 67888889988876665543 24578999995 2346888999
Q ss_pred eeEEEEcCCCcc
Q 015712 291 IRYVVLDEADTL 302 (402)
Q Consensus 291 l~~lVlDEad~~ 302 (402)
++++|+-++|..
T Consensus 514 v~lVi~~d~d~~ 525 (661)
T 2d7d_A 514 VSLVAILDADKE 525 (661)
T ss_dssp EEEEEETTTTCC
T ss_pred CCEEEEeCcccc
Confidence 999999998854
No 150
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=93.57 E-value=0.12 Score=48.94 Aligned_cols=50 Identities=12% Similarity=0.240 Sum_probs=30.8
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHH-----cCCcEEEEcCCCCChhhHh
Q 015712 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVL-----NGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il-----~g~dvli~a~TGsGKTla~ 195 (402)
..+|++++-.+.+.+.|.+.=. .|.+ .|.+. ..+.+++.||+|+|||+..
T Consensus 8 ~~~~~di~G~~~~k~~l~~~v~---~p~~---~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 8 NVKWSDVAGLEGAKEALKEAVI---LPIK---FPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHH---HHHH---CGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHH---HHHh---CHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 4578898877777777654310 0000 01111 2367999999999999753
No 151
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=93.42 E-value=0.11 Score=51.81 Aligned_cols=17 Identities=29% Similarity=0.444 Sum_probs=14.7
Q ss_pred CcEEEEcCCCCChhhHh
Q 015712 179 KSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 179 ~dvli~a~TGsGKTla~ 195 (402)
.++++.||+|+|||...
T Consensus 51 ~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCcHHHHH
Confidence 36999999999999754
No 152
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=93.40 E-value=0.21 Score=47.12 Aligned_cols=50 Identities=10% Similarity=0.207 Sum_probs=31.6
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHH-----HcCCcEEEEcCCCCChhhHh
Q 015712 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAV-----LNGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i-----l~g~dvli~a~TGsGKTla~ 195 (402)
..+|+++.-.+.+++.|.+.=. .|. ..|.+ ...+.+++.||+|+|||+..
T Consensus 14 ~~~~~di~G~~~~~~~l~~~i~---~~~---~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 14 NVKWEDVAGLEGAKEALKEAVI---LPV---KFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTH---HHH---HCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCCHHHhcChHHHHHHHHHHHH---HHH---hCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 4568998877787777765411 010 01111 12357999999999999753
No 153
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=93.39 E-value=0.24 Score=46.93 Aligned_cols=58 Identities=17% Similarity=0.048 Sum_probs=31.3
Q ss_pred cCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHH-HHHHHHHHHH
Q 015712 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEES-ADQGFHMAKF 238 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreL-a~Qi~~~~~~ 238 (402)
.|.-+++.|++|+|||...+- ++..+...... .+.+..++|+.-...+ ..++...+..
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~-la~~~~~~~~~---gg~~~~vlyi~~e~~~~~~~l~~~~~~ 164 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQ-LSVNVQLPPEK---GGLSGKAVYIDTEGTFRWERIENMAKA 164 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHH-HHHHTTSCGGG---TCCSCEEEEEESSSCCCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHhHHHHH-HHHHHhccccc---CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999975433 33322211000 1124578887654332 3444444444
No 154
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=93.35 E-value=0.39 Score=46.50 Aligned_cols=39 Identities=13% Similarity=0.209 Sum_probs=26.4
Q ss_pred cCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCc
Q 015712 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTT 225 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~Pt 225 (402)
.|.-+++.|++|+|||. +++.++..+.. .+..++|+..-
T Consensus 73 ~G~li~I~G~pGsGKTt-lal~la~~~~~---------~g~~vlyi~~E 111 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTT-LALAIVAQAQK---------AGGTCAFIDAE 111 (366)
T ss_dssp TTSEEEEEESTTSSHHH-HHHHHHHHHHH---------TTCCEEEEESS
T ss_pred CCcEEEEEcCCCCChHH-HHHHHHHHHHH---------CCCeEEEEECC
Confidence 35678999999999996 44555554443 24467777654
No 155
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=93.22 E-value=0.8 Score=46.42 Aligned_cols=78 Identities=14% Similarity=0.132 Sum_probs=60.9
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHh----cCCccEEEeCchhhHHHhhcCCCCCCC
Q 015712 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDD 290 (402)
Q Consensus 215 ~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~l~~~l~~~~~~l~~ 290 (402)
.+.++||.|+|+.-+..++..+..... .++.+..++|+.+...+...+ ....+|||||. +-..++++.+
T Consensus 338 ~~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~------~~~~GiDip~ 410 (563)
T 3i5x_A 338 SNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD------VGARGMDFPN 410 (563)
T ss_dssp TCCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG------GGTSSCCCTT
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc------hhhcCCCccc
Confidence 467999999999999999988877533 267888999999877765544 35689999996 2346889999
Q ss_pred eeEEEEcCC
Q 015712 291 IRYVVLDEA 299 (402)
Q Consensus 291 l~~lVlDEa 299 (402)
+++||.-..
T Consensus 411 v~~VI~~~~ 419 (563)
T 3i5x_A 411 VHEVLQIGV 419 (563)
T ss_dssp CCEEEEESC
T ss_pred CCEEEEECC
Confidence 999986554
No 156
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=93.17 E-value=0.37 Score=45.02 Aligned_cols=18 Identities=22% Similarity=0.228 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCCChhhHh
Q 015712 178 GKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~ 195 (402)
...+++.|++|+|||...
T Consensus 38 ~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCCEEECCTTCCCHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 368999999999999753
No 157
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.08 E-value=0.48 Score=44.70 Aligned_cols=143 Identities=10% Similarity=0.030 Sum_probs=68.1
Q ss_pred cCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhccCCcceee-------
Q 015712 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSM------- 249 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~------- 249 (402)
.|.-+++.|++|+|||.. ++-++..+.. .+..++|++-- .-..|+...+..... ++...-
T Consensus 67 ~G~l~li~G~pG~GKTtl-~l~ia~~~a~---------~g~~vl~~slE-~s~~~l~~R~~~~~~--~i~~~~l~~~~~~ 133 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAF-ALKQAKNMSD---------NDDVVNLHSLE-MGKKENIKRLIVTAG--SINAQKIKAARRD 133 (315)
T ss_dssp TTCEEEEECCTTSSHHHH-HHHHHHHHHT---------TTCEEEEEESS-SCHHHHHHHHHHHHT--TCCHHHHHSCHHH
T ss_pred CCcEEEEEeCCCCCHHHH-HHHHHHHHHH---------cCCeEEEEECC-CCHHHHHHHHHHHHc--CCCHHHHhcCCCC
Confidence 456799999999999964 4444433332 23567777643 333444443333211 222111
Q ss_pred ccCCCCh--HHHHHHhcCCccEEEe-----CchhhHHHhhcCCCCCCCee--EEEEcCCCccccCC----CHHHHHHHHH
Q 015712 250 ENGGVSS--KALEDVSNAPIGMLIA-----TPSEVLQHIEDRNVSCDDIR--YVVLDEADTLFDRG----FGPEISKILN 316 (402)
Q Consensus 250 ~~gg~~~--~~~~~~l~~~~~IlV~-----TP~~l~~~l~~~~~~l~~l~--~lVlDEad~~l~~g----f~~~i~~il~ 316 (402)
+.++... ..-...+.. ..|+|. |+..+...+..-. .-..++ +||||-+..|...+ ....+..+++
T Consensus 134 l~~~~~~~l~~a~~~l~~-~~i~i~d~~~~~~~~i~~~i~~l~-~~~~~~~~lVVID~l~~l~~~~~~~~r~~~i~~~~~ 211 (315)
T 3bh0_A 134 FASEDWGKLSMAIGEISN-SNINIFDKAGQSVNYIWSKTRQTK-RKNPGKRVIVMIDYLQLLEPAKANDSRTNQISQISR 211 (315)
T ss_dssp HCSSCHHHHHHHHHHHHT-SCEEEECCSCCBHHHHHHHHHHHH-HTSSSCCEEEEEECGGGSBCSCTTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhC-CCEEEECCCCCCHHHHHHHHHHHH-HhcCCCCeEEEEeCchhcCCCCCCCCHHHHHHHHHH
Confidence 1111100 000111222 345543 3344444333211 112578 99999999876422 2245666666
Q ss_pred HhhhhhcccCCCCceEEEEee
Q 015712 317 PLKDSALKSNGQGFQTILVTA 337 (402)
Q Consensus 317 ~l~~~~~~~~~~~~q~i~~SA 337 (402)
.|...... .++.+|++|-
T Consensus 212 ~Lk~lAk~---~~i~vi~lsq 229 (315)
T 3bh0_A 212 DLKKMARE---LDVVVIALSQ 229 (315)
T ss_dssp HHHHHHHH---HTCEEEEEEC
T ss_pred HHHHHHHH---hCCeEEEEee
Confidence 66432211 2566666554
No 158
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=92.69 E-value=1.7 Score=38.42 Aligned_cols=21 Identities=14% Similarity=0.105 Sum_probs=17.0
Q ss_pred cCCcEEEEcCCCCChhhHhHH
Q 015712 177 NGKSVVLSSGSGSGRTLAYLL 197 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~~l 197 (402)
.|.-+++.|++|+|||.....
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~ 43 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHT 43 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHH
Confidence 466799999999999976543
No 159
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=92.63 E-value=0.31 Score=48.35 Aligned_cols=53 Identities=9% Similarity=0.106 Sum_probs=31.8
Q ss_pred cccccccCCCCHHHHHHHHHCCC---CCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHh
Q 015712 139 VVSSFQELGLKAEMIKAVEKMGL---FVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 139 ~~~~f~~l~l~~~l~~~l~~~g~---~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~ 195 (402)
+..+|++++-.+.+.+.|.+.-. ..|.-++ ......+.+++.||+|+|||+..
T Consensus 129 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~----~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 129 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFT----GKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTS----GGGCCCSEEEEECSTTSSHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhh----ccCCCCceEEEECCCCCCHHHHH
Confidence 34678998877777777765311 0000000 00122468999999999999753
No 160
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=92.32 E-value=1.2 Score=45.37 Aligned_cols=79 Identities=14% Similarity=0.128 Sum_probs=61.3
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHh----cCCccEEEeCchhhHHHhhcCCCCCCC
Q 015712 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDD 290 (402)
Q Consensus 215 ~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~l~~~l~~~~~~l~~ 290 (402)
.+.++||.|+|+.-|..++..+..... .++.+..++|+.+...+...+ ....+|||||. +-..++++.+
T Consensus 287 ~~~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~------~~~~GiDip~ 359 (579)
T 3sqw_A 287 SNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD------VGARGMDFPN 359 (579)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG------GGTSSCCCTT
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc------hhhcCCCccc
Confidence 467999999999999999988877533 267888999999877765544 34688999995 2345889999
Q ss_pred eeEEEEcCCC
Q 015712 291 IRYVVLDEAD 300 (402)
Q Consensus 291 l~~lVlDEad 300 (402)
+++||.-..-
T Consensus 360 v~~VI~~~~p 369 (579)
T 3sqw_A 360 VHEVLQIGVP 369 (579)
T ss_dssp CCEEEEESCC
T ss_pred CCEEEEcCCC
Confidence 9999876543
No 161
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.11 E-value=0.4 Score=47.65 Aligned_cols=143 Identities=10% Similarity=0.034 Sum_probs=68.8
Q ss_pred cCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeec-cCC--
Q 015712 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSME-NGG-- 253 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~-~gg-- 253 (402)
.|.-+++.|++|+|||.. ++-++..+.. .+..++|++-- .-..|+...+.... .++...-+ .|.
T Consensus 196 ~G~liiIaG~pG~GKTtl-al~ia~~~a~---------~g~~vl~fSlE-ms~~ql~~R~~~~~--~~i~~~~l~~g~~~ 262 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAF-ALKQAKNMSD---------NDDVVNLHSLE-MGKKENIKRLIVTA--GSINAQKIKAARRD 262 (444)
T ss_dssp SSCEEEEEECSSSSHHHH-HHHHHHHHHH---------TTCEEEEECSS-SCTTHHHHHHHHHH--SCCCHHHHHHTGGG
T ss_pred CCcEEEEEeCCCCChHHH-HHHHHHHHHH---------cCCEEEEEECC-CCHHHHHHHHHHHH--cCCCHHHHhcccCC
Confidence 355699999999999964 4444444433 24567777643 22233333322211 12221111 111
Q ss_pred ---CChHH---HHHHhcCCccEEE-eC----chhhHHHhhcCCCCCCCee--EEEEcCCCccccCC----CHHHHHHHHH
Q 015712 254 ---VSSKA---LEDVSNAPIGMLI-AT----PSEVLQHIEDRNVSCDDIR--YVVLDEADTLFDRG----FGPEISKILN 316 (402)
Q Consensus 254 ---~~~~~---~~~~l~~~~~IlV-~T----P~~l~~~l~~~~~~l~~l~--~lVlDEad~~l~~g----f~~~i~~il~ 316 (402)
..... -...+.. ..|.| .+ +..+...+++-.. -..++ +||||-...|...+ ....+..+.+
T Consensus 263 l~~~~~~~l~~a~~~l~~-~~l~i~d~~~~s~~~i~~~ir~l~~-~~~~~~~lIVID~Lq~~~~~~~~~~r~~~i~~i~~ 340 (444)
T 3bgw_A 263 FASEDWGKLSMAIGEISN-SNINIFDKAGQSVNYIWSKTRQTKR-KNPGKRVIVMIDYLQLLEPAKANDSRTNQISQISR 340 (444)
T ss_dssp TCCSCHHHHHHHHHHHHT-SCEEEECCSSCBHHHHHHHHHHHHH-HSCSSCEEEEEECSTTSBCSCSSSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHH-HhCCCCeEEEEecHHhccCCCCCCCHHHHHHHHHH
Confidence 11111 1112222 34554 33 3444433332100 12578 99999999876432 2345666666
Q ss_pred HhhhhhcccCCCCceEEEEee
Q 015712 317 PLKDSALKSNGQGFQTILVTA 337 (402)
Q Consensus 317 ~l~~~~~~~~~~~~q~i~~SA 337 (402)
.|...... -++.+|++|-
T Consensus 341 ~Lk~lAke---~~v~vi~lsq 358 (444)
T 3bgw_A 341 DLKKMARE---LDVVVIALSQ 358 (444)
T ss_dssp HHHHHHHH---HTCEEEEEEE
T ss_pred HHHHHHHH---hCCeEEEEec
Confidence 66532211 2667777765
No 162
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=92.08 E-value=0.54 Score=44.26 Aligned_cols=19 Identities=21% Similarity=0.172 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCCChhhHhH
Q 015712 178 GKSVVLSSGSGSGRTLAYL 196 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~~ 196 (402)
|.-+++.|++|+|||...+
T Consensus 98 g~i~~i~G~~gsGKT~la~ 116 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMH 116 (322)
T ss_dssp TEEEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568999999999997543
No 163
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=92.07 E-value=2.3 Score=36.84 Aligned_cols=20 Identities=25% Similarity=0.185 Sum_probs=16.2
Q ss_pred cCCcEEEEcCCCCChhhHhH
Q 015712 177 NGKSVVLSSGSGSGRTLAYL 196 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~~ 196 (402)
.|.-+++.|++|+|||....
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~ 38 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLAL 38 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 35678999999999997543
No 164
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=92.07 E-value=0.54 Score=44.15 Aligned_cols=71 Identities=20% Similarity=0.234 Sum_probs=55.7
Q ss_pred CCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHh----cCCccEEEeCchhhHHHhhcCCCCCCCe
Q 015712 216 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDDI 291 (402)
Q Consensus 216 ~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~l~~~l~~~~~~l~~l 291 (402)
+.++||.|+|+.-+..++..+... ++.+..++|+.+...+...+ ....+|+|+|. +-..++++.++
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~------va~~Gidi~~v 97 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD------VAARGLDIPQV 97 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS------TTTCSTTCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec------hhhcCccccce
Confidence 568999999999998887776553 78899999999877766544 34678999994 23457888999
Q ss_pred eEEEE
Q 015712 292 RYVVL 296 (402)
Q Consensus 292 ~~lVl 296 (402)
++||.
T Consensus 98 ~~VI~ 102 (300)
T 3i32_A 98 DLVVH 102 (300)
T ss_dssp SEEEE
T ss_pred eEEEE
Confidence 98885
No 165
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=91.96 E-value=0.39 Score=41.50 Aligned_cols=73 Identities=16% Similarity=0.170 Sum_probs=46.5
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHh----cCCccEEEeCchhhHHHhhcCCCCCCC
Q 015712 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDD 290 (402)
Q Consensus 215 ~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~l~~~l~~~~~~l~~ 290 (402)
.+.++||.|+++.-+..+...+... ++.+..++|+.+...+...+ .....|||+|. . -..++++.+
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-~-----~~~Gldi~~ 114 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-V-----AARGLDISN 114 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSSSEEEEEC------------CCCS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC-h-----hhcCCCccc
Confidence 3668999999999999988887764 67888999988765543332 34678999993 1 234678888
Q ss_pred eeEEEEc
Q 015712 291 IRYVVLD 297 (402)
Q Consensus 291 l~~lVlD 297 (402)
+.++|.=
T Consensus 115 ~~~VI~~ 121 (185)
T 2jgn_A 115 VKHVINF 121 (185)
T ss_dssp BSEEEES
T ss_pred CCEEEEe
Confidence 9988863
No 166
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=91.92 E-value=0.68 Score=40.68 Aligned_cols=34 Identities=18% Similarity=0.244 Sum_probs=26.7
Q ss_pred CcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEE
Q 015712 179 KSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVL 222 (402)
Q Consensus 179 ~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl 222 (402)
..+++..++|.|||.+.+--++..+. .|.+|+|+
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g----------~G~rV~~v 62 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVG----------HGKNVGVV 62 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHH----------TTCCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH----------CCCeEEEE
Confidence 47999999999999987666665554 47788888
No 167
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=91.79 E-value=1.3 Score=42.39 Aligned_cols=73 Identities=14% Similarity=0.174 Sum_probs=58.0
Q ss_pred CCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHh----cCCccEEEeCchhhHHHhhcCCCCCCCe
Q 015712 216 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDDI 291 (402)
Q Consensus 216 ~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~l~~~l~~~~~~l~~l 291 (402)
+.++||.|+++.-+..++..+... ++.+..++|+.+...+...+ ....+|||+|. +-..++++.++
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidip~~ 335 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN------VCARGIDVEQV 335 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG------GGTSSCCCTTE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC------ccccCCCccCC
Confidence 568999999999999998888765 67889999999877765544 34678999995 23468899999
Q ss_pred eEEEEcC
Q 015712 292 RYVVLDE 298 (402)
Q Consensus 292 ~~lVlDE 298 (402)
++||.-.
T Consensus 336 ~~Vi~~~ 342 (412)
T 3fht_A 336 SVVINFD 342 (412)
T ss_dssp EEEEESS
T ss_pred CEEEEEC
Confidence 9988543
No 168
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=91.78 E-value=1.6 Score=48.73 Aligned_cols=80 Identities=14% Similarity=0.231 Sum_probs=63.2
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHh----cCCccEEEeCchhhHHHhhcCCCCCCC
Q 015712 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDD 290 (402)
Q Consensus 215 ~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~l~~~l~~~~~~l~~ 290 (402)
.+.+++|+|++++-+..++..++... .++++..++|+.+...+...+ ....+|||||. +-..++++.+
T Consensus 811 ~g~qvlvf~~~v~~~~~l~~~L~~~~--p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~------v~e~GiDip~ 882 (1151)
T 2eyq_A 811 RGGQVYYLYNDVENIQKAAERLAELV--PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT------IIETGIDIPT 882 (1151)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHHHHC--TTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESS------TTGGGSCCTT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHHhC--CCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECC------cceeeecccC
Confidence 46789999999999999888887753 367899999999877665443 35689999995 2345889999
Q ss_pred eeEEEEcCCCcc
Q 015712 291 IRYVVLDEADTL 302 (402)
Q Consensus 291 l~~lVlDEad~~ 302 (402)
++++|+..+|.+
T Consensus 883 v~~VIi~~~~~~ 894 (1151)
T 2eyq_A 883 ANTIIIERADHF 894 (1151)
T ss_dssp EEEEEETTTTSS
T ss_pred CcEEEEeCCCCC
Confidence 999999888753
No 169
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=91.71 E-value=0.63 Score=44.90 Aligned_cols=72 Identities=17% Similarity=0.216 Sum_probs=57.0
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHh----cCCccEEEeCchhhHHHhhcCCCCCCC
Q 015712 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDD 290 (402)
Q Consensus 215 ~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~l~~~l~~~~~~l~~ 290 (402)
.+.++||.|+++..+..++..+... ++.+..++|+.+...+...+ ....+|||+|. +-..++++.+
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~------~~~~Gidip~ 344 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA------VAARGLDISN 344 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH------HHHTTSCCCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC------hhhcCCCccc
Confidence 4678999999999999988887764 67899999999877665443 34678999995 2235788999
Q ss_pred eeEEEE
Q 015712 291 IRYVVL 296 (402)
Q Consensus 291 l~~lVl 296 (402)
+++||.
T Consensus 345 v~~Vi~ 350 (417)
T 2i4i_A 345 VKHVIN 350 (417)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 999886
No 170
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=91.68 E-value=1.4 Score=43.16 Aligned_cols=27 Identities=19% Similarity=0.266 Sum_probs=21.2
Q ss_pred cccccccccCCCCHHHHHHHHHCCCCC
Q 015712 137 AEVVSSFQELGLKAEMIKAVEKMGLFV 163 (402)
Q Consensus 137 ~~~~~~f~~l~l~~~l~~~l~~~g~~~ 163 (402)
+.++......||++..++.|.+.||..
T Consensus 80 ~~~~~~l~~~gi~~~~~~~L~~ag~~t 106 (400)
T 3lda_A 80 FVPIEKLQVNGITMADVKKLRESGLHT 106 (400)
T ss_dssp SCBGGGGCCTTCCHHHHHHHHHTTCCB
T ss_pred ccCHHHHHhCCCCHHHHHHHHHcCCCc
Confidence 345667777889999999998888865
No 171
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=91.56 E-value=4.3 Score=42.31 Aligned_cols=93 Identities=11% Similarity=0.087 Sum_probs=68.0
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHh---c-CCccEEEeCchhhHHHhhcCCCCCCC
Q 015712 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS---N-APIGMLIATPSEVLQHIEDRNVSCDD 290 (402)
Q Consensus 215 ~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l---~-~~~~IlV~TP~~l~~~l~~~~~~l~~ 290 (402)
.+.++||.|+|+..+..+...+... ++.+..++|+.+...+...+ . ...+|+|||.- -..++++.+
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~------l~~GlDip~ 507 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINL------LREGLDIPE 507 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCC------CCTTCCCTT
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhc----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccCh------hhcCccCCC
Confidence 3669999999999999988887764 67888889988876665543 2 45789999942 246888999
Q ss_pred eeEEEEcCCCccccCCCHHHHHHHHHHhhh
Q 015712 291 IRYVVLDEADTLFDRGFGPEISKILNPLKD 320 (402)
Q Consensus 291 l~~lVlDEad~~l~~gf~~~i~~il~~l~~ 320 (402)
++++|+=++|.. ||......++....+
T Consensus 508 v~lVI~~d~d~~---G~p~s~~~~iQr~GR 534 (664)
T 1c4o_A 508 VSLVAILDADKE---GFLRSERSLIQTIGR 534 (664)
T ss_dssp EEEEEETTTTSC---SGGGSHHHHHHHHGG
T ss_pred CCEEEEeCCccc---CCCCCHHHHHHHHCc
Confidence 999999888753 444444455555443
No 172
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=91.51 E-value=5.3 Score=37.61 Aligned_cols=77 Identities=17% Similarity=0.206 Sum_probs=60.6
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHh----cCCccEEEeCchhhHHHhhcCCCCCCC
Q 015712 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDD 290 (402)
Q Consensus 215 ~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~l~~~l~~~~~~l~~ 290 (402)
.+.++||.|+++.-+..++..++.. ++.+..++|+.+...+...+ ....+|||+|. +-..++++.+
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidip~ 311 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN------VLARGIDIPT 311 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG------GGSSSCCCTT
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC------hhhcCCCccc
Confidence 4578999999999999988888764 67889999998877665543 34578999995 2346889999
Q ss_pred eeEEEEcCCCc
Q 015712 291 IRYVVLDEADT 301 (402)
Q Consensus 291 l~~lVlDEad~ 301 (402)
+++||.-+...
T Consensus 312 ~~~Vi~~~~p~ 322 (395)
T 3pey_A 312 VSMVVNYDLPT 322 (395)
T ss_dssp EEEEEESSCCB
T ss_pred CCEEEEcCCCC
Confidence 99999866654
No 173
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=91.51 E-value=0.77 Score=45.14 Aligned_cols=69 Identities=22% Similarity=0.252 Sum_probs=55.6
Q ss_pred eEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHh----cCCccEEEeCchhhHHHhhcCCCCCCCeeE
Q 015712 218 RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDDIRY 293 (402)
Q Consensus 218 ~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~ 293 (402)
.+||.|+|+.-|..++..+... ++.+..++|+.+..++...+ .....|||||. +-..++++.++++
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~------v~~rGlDi~~v~~ 371 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEK----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS------VASRGLDIKNIKH 371 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG------GGTSSCCCTTCCE
T ss_pred CEEEEEeCcHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch------hhhCCCCcccCCE
Confidence 4999999999999988877764 67899999999877765544 34678999996 3346889999999
Q ss_pred EEE
Q 015712 294 VVL 296 (402)
Q Consensus 294 lVl 296 (402)
||.
T Consensus 372 VI~ 374 (434)
T 2db3_A 372 VIN 374 (434)
T ss_dssp EEE
T ss_pred EEE
Confidence 886
No 174
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=91.17 E-value=2 Score=39.27 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=18.5
Q ss_pred HHcCCcEEEEcCCCCChhhHhHH
Q 015712 175 VLNGKSVVLSSGSGSGRTLAYLL 197 (402)
Q Consensus 175 il~g~dvli~a~TGsGKTla~~l 197 (402)
+..|.-+++.|++|+|||.....
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~ 49 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQ 49 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHH
Confidence 44678899999999999975433
No 175
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.05 E-value=1.3 Score=43.39 Aligned_cols=53 Identities=26% Similarity=0.405 Sum_probs=32.4
Q ss_pred cccccccCCCCHHHHHHHHHCC---CCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhH
Q 015712 139 VVSSFQELGLKAEMIKAVEKMG---LFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLA 194 (402)
Q Consensus 139 ~~~~f~~l~l~~~l~~~l~~~g---~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla 194 (402)
+..+|++.|=-+...+.|.+.= +..|--++...+ .--+.+|+.||+|+|||+.
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi---~~prGvLL~GPPGTGKTll 198 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGI---AQPKGVILYGPPGTGKTLL 198 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTC---CCCCCEEEESCSSSSHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCceEEeCCCCCCHHHH
Confidence 3467999987677777766541 111111111111 1236899999999999975
No 176
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=91.04 E-value=2.2 Score=40.33 Aligned_cols=16 Identities=25% Similarity=0.364 Sum_probs=13.8
Q ss_pred cEEEEcCCCCChhhHh
Q 015712 180 SVVLSSGSGSGRTLAY 195 (402)
Q Consensus 180 dvli~a~TGsGKTla~ 195 (402)
.+++.||.|+|||...
T Consensus 40 ~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIA 55 (373)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4799999999999754
No 177
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=90.65 E-value=0.22 Score=44.55 Aligned_cols=46 Identities=17% Similarity=0.208 Sum_probs=28.4
Q ss_pred CCeeEEEEcCCCcccc-----CCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCch
Q 015712 289 DDIRYVVLDEADTLFD-----RGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEM 342 (402)
Q Consensus 289 ~~l~~lVlDEad~~l~-----~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~ 342 (402)
.+.++||+||.-.+++ ......+..++..+... + -+++++......
T Consensus 134 ~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~-------g-~tii~vtH~~~~ 184 (251)
T 2ehv_A 134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEM-------G-VTTILTTEAPDP 184 (251)
T ss_dssp TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHH-------C-CEEEEEECCC--
T ss_pred hCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHC-------C-CeEEEEECCCCC
Confidence 4678999999988876 33444577777776531 3 355555554433
No 178
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=90.52 E-value=1.6 Score=41.89 Aligned_cols=72 Identities=17% Similarity=0.260 Sum_probs=56.7
Q ss_pred CCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHh----cCCccEEEeCchhhHHHhhcCCCCCCCe
Q 015712 216 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDDI 291 (402)
Q Consensus 216 ~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~l~~~l~~~~~~l~~l 291 (402)
..++||.|+++.-+..++..+... ++.+..++|+.+...+...+ .....|||+|. +-..++++.++
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidi~~v 345 (410)
T 2j0s_A 276 ITQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD------VWARGLDVPQV 345 (410)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG------GGSSSCCCTTE
T ss_pred CCcEEEEEcCHHHHHHHHHHHHhC----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC------hhhCcCCcccC
Confidence 458999999999999988877764 67888999999877665443 34678999995 23467899999
Q ss_pred eEEEEc
Q 015712 292 RYVVLD 297 (402)
Q Consensus 292 ~~lVlD 297 (402)
+++|.-
T Consensus 346 ~~Vi~~ 351 (410)
T 2j0s_A 346 SLIINY 351 (410)
T ss_dssp EEEEES
T ss_pred CEEEEE
Confidence 999863
No 179
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=90.50 E-value=1.4 Score=42.08 Aligned_cols=74 Identities=9% Similarity=0.176 Sum_probs=57.4
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHh----cCCccEEEeCchhhHHHhhcCCCCCCC
Q 015712 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDD 290 (402)
Q Consensus 215 ~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~l~~~l~~~~~~l~~ 290 (402)
.+.++||.|+++.-+..++..+... ++.+..++|+.+...+...+ .....|||+|. +-..++++.+
T Consensus 257 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~------~~~~Gidip~ 326 (400)
T 1s2m_A 257 QINQAIIFCNSTNRVELLAKKITDL----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD------LLTRGIDIQA 326 (400)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS------CSSSSCCCTT
T ss_pred CCCcEEEEEecHHHHHHHHHHHHhc----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC------ccccCCCccC
Confidence 3568999999999999988888765 67888999998877665443 34678999994 2345788999
Q ss_pred eeEEEEcC
Q 015712 291 IRYVVLDE 298 (402)
Q Consensus 291 l~~lVlDE 298 (402)
++++|.-+
T Consensus 327 ~~~Vi~~~ 334 (400)
T 1s2m_A 327 VNVVINFD 334 (400)
T ss_dssp EEEEEESS
T ss_pred CCEEEEeC
Confidence 99988643
No 180
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.46 E-value=0.62 Score=43.19 Aligned_cols=16 Identities=25% Similarity=0.461 Sum_probs=13.9
Q ss_pred cEEEEcCCCCChhhHh
Q 015712 180 SVVLSSGSGSGRTLAY 195 (402)
Q Consensus 180 dvli~a~TGsGKTla~ 195 (402)
++++.||.|+|||...
T Consensus 44 ~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSV 59 (323)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred eEEEECcCCCCHHHHH
Confidence 5999999999999653
No 181
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=90.43 E-value=0.97 Score=43.49 Aligned_cols=17 Identities=18% Similarity=0.245 Sum_probs=14.1
Q ss_pred CcEEE--EcCCCCChhhHh
Q 015712 179 KSVVL--SSGSGSGRTLAY 195 (402)
Q Consensus 179 ~dvli--~a~TGsGKTla~ 195 (402)
..+++ .|+.|+|||...
T Consensus 51 ~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp EEEEEECTTCCSSSHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHH
Confidence 46888 899999999754
No 182
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=90.38 E-value=0.92 Score=45.58 Aligned_cols=52 Identities=10% Similarity=0.066 Sum_probs=38.9
Q ss_pred cCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhc
Q 015712 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 241 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~ 241 (402)
.|....+.+-||||||++..-- +. . .+..+|||+|+...|.|++..+..+..
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a~l-~~---~---------~~~p~lvv~~~~~~A~~l~~~l~~~~~ 64 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVAEI-AE---R---------HAGPVVLIAPDMQNALRLHDEISQFTD 64 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHHHH-HH---H---------SSSCEEEEESSHHHHHHHHHHHHHTCS
T ss_pred CCCeEEEeCCCchHHHHHHHHH-HH---H---------hCCCEEEEeCCHHHHHHHHHHHHhhCC
Confidence 4567889999999998753221 11 1 233589999999999999999998753
No 183
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=90.33 E-value=0.92 Score=43.20 Aligned_cols=76 Identities=7% Similarity=0.038 Sum_probs=58.6
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHh----cCCccEEEeCchhhHHHhhcCCCCCCC
Q 015712 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDD 290 (402)
Q Consensus 215 ~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~l~~~l~~~~~~l~~ 290 (402)
.+.++||.|+++..+..++..+... ++.+..++|+.+...+...+ .....|||+|. .-..++++.+
T Consensus 249 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~------~~~~Gidi~~ 318 (391)
T 1xti_A 249 EFNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN------LFGRGMDIER 318 (391)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESC------CCSSCBCCTT
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECC------hhhcCCCccc
Confidence 3568999999999999988887764 67888999998876655443 34678999994 2245788999
Q ss_pred eeEEEEcCCC
Q 015712 291 IRYVVLDEAD 300 (402)
Q Consensus 291 l~~lVlDEad 300 (402)
++++|.-...
T Consensus 319 ~~~Vi~~~~p 328 (391)
T 1xti_A 319 VNIAFNYDMP 328 (391)
T ss_dssp EEEEEESSCC
T ss_pred CCEEEEeCCC
Confidence 9999975543
No 184
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.19 E-value=1.4 Score=41.67 Aligned_cols=16 Identities=19% Similarity=0.426 Sum_probs=13.8
Q ss_pred cEEEEcCCCCChhhHh
Q 015712 180 SVVLSSGSGSGRTLAY 195 (402)
Q Consensus 180 dvli~a~TGsGKTla~ 195 (402)
++++.||.|+|||...
T Consensus 48 ~~ll~Gp~G~GKTtla 63 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTI 63 (340)
T ss_dssp CEEEECSSSSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3999999999999754
No 185
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=90.13 E-value=9.4 Score=35.63 Aligned_cols=18 Identities=17% Similarity=0.313 Sum_probs=14.6
Q ss_pred CCcEEEEcCCCCChhhHh
Q 015712 178 GKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~ 195 (402)
++-+++.+++|+|||...
T Consensus 104 ~~vi~ivG~~GsGKTTl~ 121 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSC 121 (306)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CeEEEEEcCCCChHHHHH
Confidence 345789999999999754
No 186
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=90.04 E-value=0.6 Score=44.79 Aligned_cols=39 Identities=18% Similarity=0.163 Sum_probs=25.8
Q ss_pred cCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCc
Q 015712 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTT 225 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~Pt 225 (402)
.|.-+++.|+.|+|||... +.++..+.. .+..++|+.-.
T Consensus 60 ~G~iv~I~G~pGsGKTtLa-l~la~~~~~---------~g~~vlyi~~E 98 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVA-LHAVANAQA---------AGGIAAFIDAE 98 (349)
T ss_dssp TTSEEEEEESTTSSHHHHH-HHHHHHHHH---------TTCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHH-HHHHHHHHh---------CCCeEEEEECC
Confidence 4567999999999999754 333333333 24567777643
No 187
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=89.92 E-value=0.27 Score=43.82 Aligned_cols=51 Identities=18% Similarity=0.211 Sum_probs=28.8
Q ss_pred cCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHH
Q 015712 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK 237 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~ 237 (402)
.|.-+++.|++|+|||...+--+.+.+.. .+..++|++-. +-..++...+.
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~---------~~~~v~~~s~E-~~~~~~~~~~~ 79 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEE---------YGEPGVFVTLE-ERARDLRREMA 79 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHH---------HCCCEEEEESS-SCHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHh---------cCCCceeeccc-CCHHHHHHHHH
Confidence 35679999999999996443333333333 24456666532 23444444443
No 188
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.83 E-value=0.15 Score=50.78 Aligned_cols=53 Identities=21% Similarity=0.413 Sum_probs=33.1
Q ss_pred cccccccCCCCHHHHHHHHHCC---CCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhH
Q 015712 139 VVSSFQELGLKAEMIKAVEKMG---LFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLA 194 (402)
Q Consensus 139 ~~~~f~~l~l~~~l~~~l~~~g---~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla 194 (402)
+-.+|++.+--+.+.+.|.+.= +..|--++... +.--+.+|+.||.|+|||+.
T Consensus 204 P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G---i~pprGILLyGPPGTGKTlL 259 (467)
T 4b4t_H 204 PDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLG---IDPPKGILLYGPPGTGKTLC 259 (467)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCSEEEECSCTTSSHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCC---CCCCCceEeeCCCCCcHHHH
Confidence 3467999987777877776641 11111111111 11246899999999999975
No 189
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=89.72 E-value=1.6 Score=40.17 Aligned_cols=42 Identities=19% Similarity=0.250 Sum_probs=26.9
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHh
Q 015712 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 141 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~ 195 (402)
..|+++--.+.+++.|... +.. -....+++.||+|+|||...
T Consensus 14 ~~~~~~~g~~~~~~~l~~~-l~~------------~~~~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 14 RTLDEVVGQDEVIQRLKGY-VER------------KNIPHLLFSGPPGTGKTATA 55 (319)
T ss_dssp SSGGGSCSCHHHHHHHHTT-TTT------------TCCCCEEEESSSSSSHHHHH
T ss_pred CCHHHHhCCHHHHHHHHHH-HhC------------CCCCeEEEECcCCcCHHHHH
Confidence 4577766666666666543 110 01125999999999999653
No 190
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=89.71 E-value=1.2 Score=45.03 Aligned_cols=73 Identities=14% Similarity=0.247 Sum_probs=57.2
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHh----cCCccEEEeCchhhHHHhhcCCCCCCC
Q 015712 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDD 290 (402)
Q Consensus 215 ~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~l~~~l~~~~~~l~~ 290 (402)
.+..+||.|+|+.-+..++..+... ++.+..++|+.+...+...+ ....+|||+|.- -..++++.+
T Consensus 235 ~~~~~IVf~~sr~~~e~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a------~~~GiD~p~ 304 (523)
T 1oyw_A 235 RGKSGIIYCNSRAKVEDTAARLQSK----GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVA------FGMGINKPN 304 (523)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTT------SCTTTCCTT
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHC----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEech------hhCCCCccC
Confidence 3568999999999999998888764 67889999999876655433 456899999962 245788899
Q ss_pred eeEEEEc
Q 015712 291 IRYVVLD 297 (402)
Q Consensus 291 l~~lVlD 297 (402)
+++||.-
T Consensus 305 v~~VI~~ 311 (523)
T 1oyw_A 305 VRFVVHF 311 (523)
T ss_dssp CCEEEES
T ss_pred ccEEEEE
Confidence 9999863
No 191
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=89.53 E-value=1 Score=46.45 Aligned_cols=73 Identities=14% Similarity=0.244 Sum_probs=57.8
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHh----cCCccEEEeCchhhHHHhhcCCCCCCC
Q 015712 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDD 290 (402)
Q Consensus 215 ~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~l~~~l~~~~~~l~~ 290 (402)
.+..+||.|+|+.-+.+++..+... ++.+..++|+.+...+...+ ....+|||+|.- -..++++.+
T Consensus 266 ~~~~~IVf~~sr~~~e~la~~L~~~----g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a------~~~GID~p~ 335 (591)
T 2v1x_A 266 KGQSGIIYCFSQKDSEQVTVSLQNL----GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVA------FGMGIDKPD 335 (591)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTT------SCTTCCCSC
T ss_pred cCCCeEEEeCcHHHHHHHHHHHHHC----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEech------hhcCCCccc
Confidence 4678999999999999999888764 67899999999877765433 456899999952 245788999
Q ss_pred eeEEEEc
Q 015712 291 IRYVVLD 297 (402)
Q Consensus 291 l~~lVlD 297 (402)
+++||.=
T Consensus 336 V~~VI~~ 342 (591)
T 2v1x_A 336 VRFVIHH 342 (591)
T ss_dssp EEEEEES
T ss_pred ccEEEEe
Confidence 9999853
No 192
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=89.50 E-value=3.9 Score=35.53 Aligned_cols=19 Identities=21% Similarity=0.122 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCCChhhHh
Q 015712 177 NGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~ 195 (402)
.|.-+.+.||+|+|||...
T Consensus 24 ~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp SSEEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4567999999999999754
No 193
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=89.50 E-value=0.73 Score=45.56 Aligned_cols=70 Identities=9% Similarity=0.009 Sum_probs=49.0
Q ss_pred CCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEE
Q 015712 216 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 295 (402)
Q Consensus 216 ~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lV 295 (402)
+.++||.||+++-|..++..++.. ++++..++|+..............+|||||. +-..++++. +++||
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~R~~~~~~F~~g~~~vLVaT~------v~e~GiDip-v~~VI 245 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKTFEREYPTIKQKKPDFILATD------IAEMGANLC-VERVL 245 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSSCC--------CCCSEEEESS------STTCCTTCC-CSEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecchhHHHHHhhhcCCCceEEEECC------hhheeeccC-ceEEE
Confidence 568999999999999998888775 6788899985433333333345689999995 234577888 88877
Q ss_pred E
Q 015712 296 L 296 (402)
Q Consensus 296 l 296 (402)
.
T Consensus 246 ~ 246 (440)
T 1yks_A 246 D 246 (440)
T ss_dssp E
T ss_pred e
Confidence 3
No 194
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=88.99 E-value=0.53 Score=48.01 Aligned_cols=19 Identities=26% Similarity=0.405 Sum_probs=16.4
Q ss_pred cCCcEEEEcCCCCChhhHh
Q 015712 177 NGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~ 195 (402)
.|..+++.||+|+|||...
T Consensus 107 ~g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CSCEEEEESSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4778999999999999753
No 195
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=88.97 E-value=4 Score=38.63 Aligned_cols=53 Identities=23% Similarity=0.215 Sum_probs=29.3
Q ss_pred eEEEEcCCCccc-cCCCHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHHHHHHHhh
Q 015712 292 RYVVLDEADTLF-DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLME 352 (402)
Q Consensus 292 ~~lVlDEad~~l-~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~~~~~~l~ 352 (402)
+++++|.+.++- +.....++..+.+.+. ++..++++.++...++...++.|..
T Consensus 213 d~vliDtaG~~~~~~~l~~eL~~i~ral~--------~de~llvLDa~t~~~~~~~~~~~~~ 266 (328)
T 3e70_C 213 DVVLIDTAGRSETNRNLMDEMKKIARVTK--------PNLVIFVGDALAGNAIVEQARQFNE 266 (328)
T ss_dssp SEEEEEECCSCCTTTCHHHHHHHHHHHHC--------CSEEEEEEEGGGTTHHHHHHHHHHH
T ss_pred hhhHHhhccchhHHHHHHHHHHHHHHHhc--------CCCCEEEEecHHHHHHHHHHHHHHH
Confidence 456667665432 1224445555444442 3556677777777666666666553
No 196
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=88.85 E-value=11 Score=34.81 Aligned_cols=17 Identities=6% Similarity=0.053 Sum_probs=14.6
Q ss_pred CcEEEEcCCCCChhhHh
Q 015712 179 KSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 179 ~dvli~a~TGsGKTla~ 195 (402)
..++|.|+.|+|||...
T Consensus 31 ~~v~i~G~~G~GKT~L~ 47 (357)
T 2fna_A 31 PITLVLGLRRTGKSSII 47 (357)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 57999999999999743
No 197
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=88.68 E-value=1.2 Score=41.73 Aligned_cols=74 Identities=23% Similarity=0.328 Sum_probs=56.4
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHh----cCCccEEEeCchhhHHHhhcCCCCCCC
Q 015712 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDD 290 (402)
Q Consensus 215 ~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~l~~~l~~~~~~l~~ 290 (402)
.+.++||.|+++.-+..+++.+... ++.+..++|+.+...+...+ ....+|||+|. . + ..++++.+
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-~----~-~~Gid~~~ 306 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-V----M-SRGIDVND 306 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-T----H-HHHCCCSC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-h----h-hcCCCccc
Confidence 4668999999999999988888764 67888999998877665443 34678999994 1 1 23677888
Q ss_pred eeEEEEcC
Q 015712 291 IRYVVLDE 298 (402)
Q Consensus 291 l~~lVlDE 298 (402)
++++|.-.
T Consensus 307 ~~~Vi~~~ 314 (367)
T 1hv8_A 307 LNCVINYH 314 (367)
T ss_dssp CSEEEESS
T ss_pred CCEEEEec
Confidence 99888644
No 198
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=88.60 E-value=4.8 Score=37.62 Aligned_cols=27 Identities=15% Similarity=0.373 Sum_probs=18.7
Q ss_pred CCeeEEEEcCCCccccCCCHHHHHHHHHHhh
Q 015712 289 DDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (402)
Q Consensus 289 ~~l~~lVlDEad~~l~~gf~~~i~~il~~l~ 319 (402)
...+++||||||.|. ......+++.+.
T Consensus 81 ~~~kvviIdead~lt----~~a~naLLk~LE 107 (305)
T 2gno_A 81 YTRKYVIVHDCERMT----QQAANAFLKALE 107 (305)
T ss_dssp SSSEEEEETTGGGBC----HHHHHHTHHHHH
T ss_pred CCceEEEeccHHHhC----HHHHHHHHHHHh
Confidence 467899999999984 334455555554
No 199
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=88.46 E-value=1.7 Score=43.70 Aligned_cols=49 Identities=18% Similarity=0.148 Sum_probs=28.7
Q ss_pred cCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHH
Q 015712 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHM 235 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~ 235 (402)
.|.-+++.|++|+|||... +-++..+... .+..++|++- .+-..|+...
T Consensus 241 ~G~l~li~G~pG~GKT~la-l~~a~~~a~~--------~g~~vl~~s~-E~s~~~l~~r 289 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFV-RQQALQWGTA--------MGKKVGLAML-EESVEETAED 289 (503)
T ss_dssp TTCEEEEEESSCHHHHHHH-HHHHHHHTTT--------SCCCEEEEES-SSCHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHH-HHHHHHHHHh--------cCCcEEEEec-cCCHHHHHHH
Confidence 4567899999999999644 4444433321 2456777753 2223444443
No 200
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=88.25 E-value=2.9 Score=39.94 Aligned_cols=21 Identities=19% Similarity=0.060 Sum_probs=16.6
Q ss_pred cCCcEEEEcCCCCChhhHhHH
Q 015712 177 NGKSVVLSSGSGSGRTLAYLL 197 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~~l 197 (402)
.|.-+.+.|+.|+|||.....
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~ 150 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHT 150 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 356689999999999976443
No 201
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=88.25 E-value=1.5 Score=41.68 Aligned_cols=58 Identities=12% Similarity=-0.083 Sum_probs=30.9
Q ss_pred cCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHH-HHHHHHHHHH
Q 015712 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEES-ADQGFHMAKF 238 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreL-a~Qi~~~~~~ 238 (402)
.|.-+++.|++|+|||...+ -++....... ...+.+..++|+.-...+ ..++...+..
T Consensus 121 ~G~i~~I~G~~GsGKTtla~-~la~~~~~~~---~~gg~~~~vlyi~~E~~~~~~~l~~~~~~ 179 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSH-TLCVTAQLPG---AGGYPGGKIIFIDTENTFRPDRLRDIADR 179 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHH-HHHHHTTSCB---TTTBCCCEEEEEESSSCCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH-HHHHHHhccc---ccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 35568999999999997543 3333221100 001135578888654421 3344444433
No 202
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=87.72 E-value=0.54 Score=46.25 Aligned_cols=27 Identities=11% Similarity=0.279 Sum_probs=20.1
Q ss_pred cCCcEEEEcCCCCChhhHhHHHHHHHHH
Q 015712 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLR 204 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~~lpil~~l~ 204 (402)
...++++.|+||||||..+ -+++..+.
T Consensus 52 ~~~h~~i~G~tGsGKs~~~-~~li~~~~ 78 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL-RELAYTGL 78 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHHH
T ss_pred CcceEEEECCCCCCHHHHH-HHHHHHHH
Confidence 3578999999999999874 44444444
No 203
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=87.65 E-value=5.5 Score=40.02 Aligned_cols=16 Identities=19% Similarity=0.412 Sum_probs=13.7
Q ss_pred cEEEEcCCCCChhhHh
Q 015712 180 SVVLSSGSGSGRTLAY 195 (402)
Q Consensus 180 dvli~a~TGsGKTla~ 195 (402)
-+.+.|++|+|||...
T Consensus 295 VI~LVGpNGSGKTTLl 310 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTI 310 (503)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCcccHHHHH
Confidence 4789999999999864
No 204
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=87.64 E-value=0.53 Score=45.35 Aligned_cols=40 Identities=20% Similarity=0.224 Sum_probs=27.1
Q ss_pred cCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCch
Q 015712 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTE 226 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~Ptr 226 (402)
.|.-+++.+|+|+|||.. ++.++..+.. .+..++|+....
T Consensus 60 ~G~i~~I~GppGsGKSTL-al~la~~~~~---------~gg~VlyId~E~ 99 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTL-ALHAIAEAQK---------MGGVAAFIDAEH 99 (356)
T ss_dssp TTEEEEEEESTTSSHHHH-HHHHHHHHHH---------TTCCEEEEESSC
T ss_pred CCcEEEEECCCCCCHHHH-HHHHHHHHHh---------cCCeEEEEeccc
Confidence 356789999999999964 4555544443 355678876543
No 205
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=87.18 E-value=1.9 Score=45.74 Aligned_cols=16 Identities=25% Similarity=0.351 Sum_probs=14.1
Q ss_pred cEEEEcCCCCChhhHh
Q 015712 180 SVVLSSGSGSGRTLAY 195 (402)
Q Consensus 180 dvli~a~TGsGKTla~ 195 (402)
.+++.||||+|||...
T Consensus 523 ~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4999999999999754
No 206
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=87.07 E-value=0.12 Score=44.03 Aligned_cols=73 Identities=15% Similarity=0.226 Sum_probs=53.4
Q ss_pred CCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhc----CCccEEEeCchhhHHHhhcCCCCCCCe
Q 015712 216 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSN----APIGMLIATPSEVLQHIEDRNVSCDDI 291 (402)
Q Consensus 216 ~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~----~~~~IlV~TP~~l~~~l~~~~~~l~~l 291 (402)
+.++||.|+++..+..+...+... ++.+..++|+.+...+...+. ...+|||+|. +-..++++.++
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~------~~~~Gid~~~~ 99 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD------VAARGIDIPDV 99 (170)
Confidence 568999999999999888877664 677888899887666554432 3568999993 12346778888
Q ss_pred eEEEEcC
Q 015712 292 RYVVLDE 298 (402)
Q Consensus 292 ~~lVlDE 298 (402)
+++|.-+
T Consensus 100 ~~Vi~~~ 106 (170)
T 2yjt_D 100 SHVFNFD 106 (170)
Confidence 8887643
No 207
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=87.02 E-value=0.47 Score=38.99 Aligned_cols=20 Identities=20% Similarity=0.170 Sum_probs=17.0
Q ss_pred HHcCCcEEEEcCCCCChhhH
Q 015712 175 VLNGKSVVLSSGSGSGRTLA 194 (402)
Q Consensus 175 il~g~dvli~a~TGsGKTla 194 (402)
+..+.++++.|++|+|||..
T Consensus 24 ~~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHH
T ss_pred hCCCCcEEEECCCCccHHHH
Confidence 44577899999999999974
No 208
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=86.03 E-value=0.42 Score=45.49 Aligned_cols=19 Identities=21% Similarity=0.298 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCCChhhHh
Q 015712 177 NGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~ 195 (402)
.|.-+++.||+|+|||...
T Consensus 122 ~gsviLI~GpPGsGKTtLA 140 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLV 140 (331)
T ss_dssp ESEEEEEECSCSSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 4566899999999999754
No 209
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=85.92 E-value=0.54 Score=38.66 Aligned_cols=20 Identities=25% Similarity=0.282 Sum_probs=17.0
Q ss_pred HcCCcEEEEcCCCCChhhHh
Q 015712 176 LNGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 176 l~g~dvli~a~TGsGKTla~ 195 (402)
..+.++++.|++|+|||...
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 45678999999999999754
No 210
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=85.91 E-value=0.57 Score=54.76 Aligned_cols=47 Identities=17% Similarity=0.193 Sum_probs=32.0
Q ss_pred HHHHHc------CCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHH
Q 015712 172 IPAVLN------GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEES 228 (402)
Q Consensus 172 i~~il~------g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreL 228 (402)
+..++. |+.+++.+|+|+|||....--+.+ ... .+.+++|+.....+
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~e-a~~---------~G~~v~Fi~~e~~~ 1467 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA-AQR---------EGKTCAFIDAEHAL 1467 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHH-HHT---------TTCCEEEECTTSCC
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHH-HHH---------cCCcEEEEEccccc
Confidence 555555 689999999999999865433333 322 46788888765433
No 211
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=85.82 E-value=1.7 Score=42.81 Aligned_cols=68 Identities=9% Similarity=0.000 Sum_probs=48.3
Q ss_pred CCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEE
Q 015712 216 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYV 294 (402)
Q Consensus 216 ~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~l 294 (402)
+.++||.||+++-+..++..++.. ++++..++|+..............+|||||. +-..++++. +.+|
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~r~~~~~~f~~g~~~vLVaT~------v~e~GiDip-~~~V 238 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKTFESEYPKCKSEKWDFVITTD------ISEMGANFK-ADRV 238 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTTHHHHTTHHHHSCCSEEEECG------GGGTSCCCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCccHHHHHHhhcCCCCeEEEECc------hHHcCcccC-CcEE
Confidence 457999999999999988888775 6788999987432222223345689999995 233567776 6555
No 212
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=85.68 E-value=2.8 Score=40.53 Aligned_cols=76 Identities=17% Similarity=0.211 Sum_probs=54.1
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccC--------CCChHHHHHHh----cCCccEEEeCchhhHHHhh
Q 015712 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENG--------GVSSKALEDVS----NAPIGMLIATPSEVLQHIE 282 (402)
Q Consensus 215 ~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~g--------g~~~~~~~~~l----~~~~~IlV~TP~~l~~~l~ 282 (402)
.+.++||.|+++.-+..+...+... ++.+..++| +.+...+...+ ...+.|||+|. . -
T Consensus 360 ~~~k~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~-~-----~ 429 (494)
T 1wp9_A 360 QNSKIIVFTNYRETAKKIVNELVKD----GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATS-V-----G 429 (494)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHT----TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECG-G-----G
T ss_pred CCCeEEEEEccHHHHHHHHHHHHHc----CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECC-c-----c
Confidence 4678999999999999988888775 678888888 66554444333 24578999993 2 2
Q ss_pred cCCCCCCCeeEEEEcCCC
Q 015712 283 DRNVSCDDIRYVVLDEAD 300 (402)
Q Consensus 283 ~~~~~l~~l~~lVlDEad 300 (402)
..++++..+++||+-+..
T Consensus 430 ~~Gldl~~~~~Vi~~d~~ 447 (494)
T 1wp9_A 430 EEGLDVPEVDLVVFYEPV 447 (494)
T ss_dssp GGGGGSTTCCEEEESSCC
T ss_pred ccCCCchhCCEEEEeCCC
Confidence 347788889999865543
No 213
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=84.67 E-value=2.3 Score=45.30 Aligned_cols=75 Identities=16% Similarity=0.239 Sum_probs=57.1
Q ss_pred CCeEEEEcCchHHHHHHHHHHHHhh-------ccCCcceeeccCCCChHHHHHHhc---------CCccEEEeCchhhHH
Q 015712 216 HPRAIVLCTTEESADQGFHMAKFIS-------HCARLDSSMENGGVSSKALEDVSN---------APIGMLIATPSEVLQ 279 (402)
Q Consensus 216 ~~~~Lvl~PtreLa~Qi~~~~~~l~-------~~~~~~v~~~~gg~~~~~~~~~l~---------~~~~IlV~TP~~l~~ 279 (402)
+..+||.+|++.-+..++..+.... ...++.+..++|+.+..++...+. ....|||+|.-
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~i---- 378 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNI---- 378 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTH----
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcH----
Confidence 6699999999999999888877522 224778999999999887766553 24689999952
Q ss_pred HhhcCCCCCCCeeEEEE
Q 015712 280 HIEDRNVSCDDIRYVVL 296 (402)
Q Consensus 280 ~l~~~~~~l~~l~~lVl 296 (402)
-..++++.++.+||-
T Consensus 379 --ae~GidIp~v~~VId 393 (773)
T 2xau_A 379 --AETSLTIDGIVYVVD 393 (773)
T ss_dssp --HHHTCCCTTEEEEEE
T ss_pred --HHhCcCcCCeEEEEe
Confidence 234778889998774
No 214
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=84.49 E-value=3 Score=41.50 Aligned_cols=79 Identities=20% Similarity=0.216 Sum_probs=50.8
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccC--------CCChHHHHHHh---c--CCccEEEeCchhhHHHh
Q 015712 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENG--------GVSSKALEDVS---N--APIGMLIATPSEVLQHI 281 (402)
Q Consensus 215 ~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~g--------g~~~~~~~~~l---~--~~~~IlV~TP~~l~~~l 281 (402)
.+.++||.|+++..+..+...+........+.+..++| +.+..++...+ + ...+|||||. +
T Consensus 388 ~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~------~ 461 (555)
T 3tbk_A 388 PETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATS------V 461 (555)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECC------C
T ss_pred CCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcc------h
Confidence 35789999999999999999998876544566666665 44444443332 2 3478999995 2
Q ss_pred hcCCCCCCCeeEEEEcCC
Q 015712 282 EDRNVSCDDIRYVVLDEA 299 (402)
Q Consensus 282 ~~~~~~l~~l~~lVlDEa 299 (402)
-..++++.++++||.=+.
T Consensus 462 ~~~GlDlp~v~~VI~~d~ 479 (555)
T 3tbk_A 462 ADEGIDIAECNLVILYEY 479 (555)
T ss_dssp TTCCEETTSCSEEEEESC
T ss_pred hhcCCccccCCEEEEeCC
Confidence 345788999999987433
No 215
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=84.18 E-value=1.7 Score=45.45 Aligned_cols=70 Identities=9% Similarity=0.044 Sum_probs=49.1
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEE
Q 015712 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYV 294 (402)
Q Consensus 215 ~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~l 294 (402)
.+.++||.|||++-+..++..+... ++++..++|...............+|||+|. +-..++++. +++|
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~eR~~v~~~F~~g~~~VLVaTd------v~e~GIDip-v~~V 477 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRKSYDTEYPKCKNGDWDFVITTD------ISEMGANFG-ASRV 477 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSSSHHHHGGGGGTCCCSEEEECG------GGGTTCCCC-CSEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChHHHHHHHHHHHCCCceEEEECc------hhhcceeeC-CcEE
Confidence 3668999999999999888877654 7788899985222211122234679999995 234577888 8877
Q ss_pred E
Q 015712 295 V 295 (402)
Q Consensus 295 V 295 (402)
|
T Consensus 478 I 478 (673)
T 2wv9_A 478 I 478 (673)
T ss_dssp E
T ss_pred E
Confidence 6
No 216
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=83.80 E-value=5 Score=39.85 Aligned_cols=76 Identities=16% Similarity=0.128 Sum_probs=52.8
Q ss_pred CCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHh----cCCccEEEeCchhhHHHhhcCCCCCCCe
Q 015712 216 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDDI 291 (402)
Q Consensus 216 ~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~l~~~l~~~~~~l~~l 291 (402)
+...+|++....-+..+.+.+... +.++..++|+.+...+...+ ....+|||||+..+.. ++++.++
T Consensus 347 ~~~~~ivf~~~~~~~~l~~~L~~~----~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~-----GiDip~v 417 (510)
T 2oca_A 347 DENAFVMFKHVSHGKAIFDLIKNE----YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFST-----GISVKNL 417 (510)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHTT----CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHH-----SCCCCSE
T ss_pred CCCeEEEEecHHHHHHHHHHHHHc----CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhc-----ccccccC
Confidence 445555555566666666655543 34888999998876654433 3467899999765533 6789999
Q ss_pred eEEEEcCCC
Q 015712 292 RYVVLDEAD 300 (402)
Q Consensus 292 ~~lVlDEad 300 (402)
+++|+..++
T Consensus 418 ~~vi~~~~~ 426 (510)
T 2oca_A 418 HHVVLAHGV 426 (510)
T ss_dssp EEEEESSCC
T ss_pred cEEEEeCCC
Confidence 999998877
No 217
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=83.46 E-value=2.2 Score=45.95 Aligned_cols=18 Identities=28% Similarity=0.348 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCCChhhHh
Q 015712 178 GKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~ 195 (402)
..++++.|++|+|||...
T Consensus 191 ~~~vlL~G~pG~GKT~la 208 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIV 208 (854)
T ss_dssp CCCCEEEECTTSCHHHHH
T ss_pred CCceEEEcCCCCCHHHHH
Confidence 357999999999999753
No 218
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=83.45 E-value=19 Score=34.09 Aligned_cols=25 Identities=12% Similarity=0.049 Sum_probs=18.8
Q ss_pred CceEEEEeeccCchhHHHHHHHhhc
Q 015712 329 GFQTILVTAAIAEMLGEQLSSLMEC 353 (402)
Q Consensus 329 ~~q~i~~SATl~~~v~~~~~~~l~~ 353 (402)
.+.++.+||.-...+.++...+...
T Consensus 257 ~~~vi~iSA~~g~Gi~~L~~~i~~~ 281 (355)
T 3p32_A 257 RPPVLTMSAVEGRGLAELWDTVERH 281 (355)
T ss_dssp CCCEEEEBGGGTBSHHHHHHHHHHH
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHH
Confidence 4679999998888777776655544
No 219
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=83.04 E-value=2.4 Score=48.92 Aligned_cols=92 Identities=17% Similarity=0.191 Sum_probs=57.8
Q ss_pred CCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChH
Q 015712 178 GKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 257 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~ 257 (402)
|+-+.+.+|.|||||... ++++....+ .|..|+|+.+-.+|.... ++.+ |+++
T Consensus 1431 g~~iei~g~~~sGkttl~-~~~~a~~~~---------~g~~~~~i~~e~~~~~~~---~~~~----Gv~~---------- 1483 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLT-LQVIAAAQR---------EGKTCAFIDAEHALDPIY---ARKL----GVDI---------- 1483 (1706)
T ss_dssp TSEEEEECSTTSSHHHHH-HHHHHHHHH---------TTCCEEEECTTSCCCHHH---HHHT----TCCG----------
T ss_pred CCEEEEEcCCCCCHHHHH-HHHHHHHHh---------cCCeEEEEecCCCCCHHH---HHHc----CCCH----------
Confidence 466999999999999764 555554444 477899998877765553 4444 3322
Q ss_pred HHHHHhcCCccEEEeCchhhHHHhhc--CCCCCCCeeEEEEcCCCccccC
Q 015712 258 ALEDVSNAPIGMLIATPSEVLQHIED--RNVSCDDIRYVVLDEADTLFDR 305 (402)
Q Consensus 258 ~~~~~l~~~~~IlV~TP~~l~~~l~~--~~~~l~~l~~lVlDEad~~l~~ 305 (402)
-+++|.-|..--++|.- ..+.-..++.||||.+..+...
T Consensus 1484 ---------~~l~~~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv~al~~~ 1524 (1706)
T 3cmw_A 1484 ---------DNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPK 1524 (1706)
T ss_dssp ---------GGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCCT
T ss_pred ---------HHeEEeCCCcHHHHHHHHHHHHHcCCCCEEEEccHHhCCcc
Confidence 12666666543333221 1111245789999999887654
No 220
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=82.11 E-value=2.7 Score=41.52 Aligned_cols=69 Identities=4% Similarity=0.002 Sum_probs=49.5
Q ss_pred CCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEE
Q 015712 216 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 295 (402)
Q Consensus 216 ~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lV 295 (402)
+.++||.|||+.-|..++..+... ++.+..++|...............+|||||. +-..++++.. ++||
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~----g~~~~~lh~~~~~~~~~~f~~g~~~vLVaT~------v~~~GiDip~-~~VI 256 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFDTEYPKTKLTDWDFVVTTD------ISEMGANFRA-GRVI 256 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECTTTHHHHGGGGGSSCCSEEEECG------GGGSSCCCCC-SEEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHc----CCeEEECCHHHHHHHHHhhccCCceEEEECC------HHHhCcCCCC-CEEE
Confidence 458999999999999988877654 6778888887553322222345689999995 2345778887 6665
No 221
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=81.84 E-value=1.5 Score=42.12 Aligned_cols=74 Identities=15% Similarity=0.170 Sum_probs=48.7
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHh----cCCccEEEeCchhhHHHhhcCCCCCCC
Q 015712 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDD 290 (402)
Q Consensus 215 ~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~l~~~l~~~~~~l~~ 290 (402)
.+.++||.|+++.-+..++..+... ++.+..++|+.+...+...+ ....+|||+|.- -..++++.+
T Consensus 279 ~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~------~~~Gidip~ 348 (414)
T 3eiq_A 279 TITQAVIFINTRRKVDWLTEKMHAR----DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDL------LARGIDVQQ 348 (414)
T ss_dssp CCSSCEEECSCHHHHHHHHHHHHTT----TCCCEEC---CHHHHHHHHHHHHSCC---CEEECSS------CC--CCGGG
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHhc----CCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCc------cccCCCccC
Confidence 3558999999999999888777653 67888999998876655443 235789999952 235778888
Q ss_pred eeEEEEcC
Q 015712 291 IRYVVLDE 298 (402)
Q Consensus 291 l~~lVlDE 298 (402)
+++||.-.
T Consensus 349 v~~Vi~~~ 356 (414)
T 3eiq_A 349 VSLVINYD 356 (414)
T ss_dssp CSCEEESS
T ss_pred CCEEEEeC
Confidence 88887533
No 222
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=81.78 E-value=1.6 Score=44.15 Aligned_cols=40 Identities=15% Similarity=0.044 Sum_probs=26.5
Q ss_pred HHHHHHCCCCCCcHHHHHHHH-HHHcCCcEEEEcCCCCChhhH
Q 015712 153 IKAVEKMGLFVPSEIQCVGIP-AVLNGKSVVLSSGSGSGRTLA 194 (402)
Q Consensus 153 ~~~l~~~g~~~pt~iQ~~~i~-~il~g~dvli~a~TGsGKTla 194 (402)
+..|.+.|. +++.+...+. .+..|..+++.||||||||..
T Consensus 236 ~~~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 236 PIDLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred hhhHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 344556663 2333333333 456788999999999999975
No 223
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=81.71 E-value=3.3 Score=39.24 Aligned_cols=90 Identities=12% Similarity=0.078 Sum_probs=51.7
Q ss_pred cEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHH
Q 015712 180 SVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 259 (402)
Q Consensus 180 dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~ 259 (402)
-+++.++.|+|||...+ .++..+.+. ..+..++|+..-..+... .++.+ ++..
T Consensus 30 iteI~G~pGsGKTtL~L-q~~~~~~~~-------g~g~~vlyId~E~s~~~~---ra~~l----Gvd~------------ 82 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGL-TMVSSYMRQ-------YPDAVCLFYDSEFGITPA---YLRSM----GVDP------------ 82 (333)
T ss_dssp EEEEEESSSSSHHHHHH-HHHHHHHHH-------CTTCEEEEEESSCCCCHH---HHHHT----TCCG------------
T ss_pred eEEEECCCCCCHHHHHH-HHHHHHHhc-------CCCceEEEEeccchhhHH---HHHHh----CCCH------------
Confidence 58999999999997544 444444331 125688888765555322 23343 2211
Q ss_pred HHHhcCCccEEEeCchhhHHH----hhc-CCCCCCCeeEEEEcCCCccc
Q 015712 260 EDVSNAPIGMLIATPSEVLQH----IED-RNVSCDDIRYVVLDEADTLF 303 (402)
Q Consensus 260 ~~~l~~~~~IlV~TP~~l~~~----l~~-~~~~l~~l~~lVlDEad~~l 303 (402)
-++++..|..+.+. +.. ..+.-..+++||||-+..|.
T Consensus 83 -------d~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 83 -------ERVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp -------GGEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred -------HHeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccc
Confidence 13555555444333 211 11233568999999999886
No 224
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=81.57 E-value=6.2 Score=41.20 Aligned_cols=77 Identities=13% Similarity=0.149 Sum_probs=55.7
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHHhhcc--------------------------------CCcceeeccCCCChHHHHHH
Q 015712 215 MHPRAIVLCTTEESADQGFHMAKFISHC--------------------------------ARLDSSMENGGVSSKALEDV 262 (402)
Q Consensus 215 ~~~~~Lvl~PtreLa~Qi~~~~~~l~~~--------------------------------~~~~v~~~~gg~~~~~~~~~ 262 (402)
.+.++||.||++.-+..++..+...... ....+..++|+.+..++...
T Consensus 251 ~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v 330 (715)
T 2va8_A 251 KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLI 330 (715)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHH
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHH
Confidence 3678999999999999988877653211 12357889999998776654
Q ss_pred hc----CCccEEEeCchhhHHHhhcCCCCCCCeeEEEEc
Q 015712 263 SN----APIGMLIATPSEVLQHIEDRNVSCDDIRYVVLD 297 (402)
Q Consensus 263 l~----~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlD 297 (402)
.. ....|||||.- -..++++..+.+||-+
T Consensus 331 ~~~f~~g~~~vlvaT~~------l~~Gidip~~~~VI~~ 363 (715)
T 2va8_A 331 EEGFRQRKIKVIVATPT------LAAGVNLPARTVIIGD 363 (715)
T ss_dssp HHHHHTTCSCEEEECGG------GGGSSCCCBSEEEECC
T ss_pred HHHHHcCCCeEEEEChH------HhcccCCCceEEEEeC
Confidence 43 46789999952 2357888888886543
No 225
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=81.08 E-value=2.3 Score=39.35 Aligned_cols=71 Identities=15% Similarity=0.144 Sum_probs=51.8
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHh----cCCccEEEeCchhhHHHhhcCCCCCCC
Q 015712 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDD 290 (402)
Q Consensus 215 ~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~l~~~l~~~~~~l~~ 290 (402)
.+.++||.|++++.+..++..+. .+..++|+.+...+...+ ....+|||+|. . -..++++.+
T Consensus 219 ~~~~~lvf~~~~~~~~~l~~~l~--------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~-~~~Gid~~~ 284 (337)
T 2z0m_A 219 KDKGVIVFVRTRNRVAKLVRLFD--------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTD-----V-ASRGLDIPL 284 (337)
T ss_dssp CCSSEEEECSCHHHHHHHHTTCT--------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECH-----H-HHTTCCCCC
T ss_pred CCCcEEEEEcCHHHHHHHHHHhh--------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcC-----c-cccCCCccC
Confidence 46789999999998887665443 466788888876665443 34678999995 2 235788999
Q ss_pred eeEEEEcCC
Q 015712 291 IRYVVLDEA 299 (402)
Q Consensus 291 l~~lVlDEa 299 (402)
++++|.-..
T Consensus 285 ~~~Vi~~~~ 293 (337)
T 2z0m_A 285 VEKVINFDA 293 (337)
T ss_dssp BSEEEESSC
T ss_pred CCEEEEecC
Confidence 999987443
No 226
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=80.56 E-value=17 Score=33.45 Aligned_cols=19 Identities=26% Similarity=0.253 Sum_probs=15.0
Q ss_pred cCCcEEEEcCCCCChhhHh
Q 015712 177 NGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~ 195 (402)
.|+-+.+.+++|+|||...
T Consensus 97 ~~~~i~i~g~~G~GKTT~~ 115 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTA 115 (295)
T ss_dssp SSEEEEEECCTTTTHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4556778899999999753
No 227
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=80.41 E-value=8.4 Score=36.19 Aligned_cols=18 Identities=22% Similarity=0.316 Sum_probs=14.6
Q ss_pred CCcEEEEcCCCCChhhHh
Q 015712 178 GKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~ 195 (402)
++-+++.+++|+|||...
T Consensus 105 ~~vI~ivG~~G~GKTT~~ 122 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSL 122 (320)
T ss_dssp CEEEEEESSTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 445888999999999764
No 228
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.25 E-value=0.5 Score=46.80 Aligned_cols=54 Identities=17% Similarity=0.319 Sum_probs=34.8
Q ss_pred ccccccccCCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhH
Q 015712 138 EVVSSFQELGLKAEMIKAVEKM---GLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLA 194 (402)
Q Consensus 138 ~~~~~f~~l~l~~~l~~~l~~~---g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla 194 (402)
.+..+|++.+--+...+.|.+. -+..|--++...++ -.+.+|+.||+|+|||+.
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~---~prGvLLyGPPGTGKTll 231 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIR---APKGALMYGPPGTGKTLL 231 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCC---CCCEEEEESCTTSSHHHH
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCeeEEECcCCCCHHHH
Confidence 3456899999888888777653 11222222222111 236899999999999975
No 229
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=79.87 E-value=4.8 Score=39.68 Aligned_cols=17 Identities=24% Similarity=0.434 Sum_probs=13.9
Q ss_pred CcEEEEcCCCCChhhHh
Q 015712 179 KSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 179 ~dvli~a~TGsGKTla~ 195 (402)
+.+++++++|+|||...
T Consensus 101 ~vI~ivG~~GvGKTT~a 117 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSV 117 (433)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35778899999999864
No 230
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=79.82 E-value=5.4 Score=41.63 Aligned_cols=76 Identities=20% Similarity=0.267 Sum_probs=54.3
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHHhhc--------------------------cCCcceeeccCCCChHHHHHHh----c
Q 015712 215 MHPRAIVLCTTEESADQGFHMAKFISH--------------------------CARLDSSMENGGVSSKALEDVS----N 264 (402)
Q Consensus 215 ~~~~~Lvl~PtreLa~Qi~~~~~~l~~--------------------------~~~~~v~~~~gg~~~~~~~~~l----~ 264 (402)
.+.++||.||++.-+..++..+..... ..+..+..++|+.+..++.... .
T Consensus 241 ~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~ 320 (702)
T 2p6r_A 241 ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRR 320 (702)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHT
T ss_pred cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHC
Confidence 356899999999999988887765321 1123577889999987766543 2
Q ss_pred CCccEEEeCchhhHHHhhcCCCCCCCeeEEEE
Q 015712 265 APIGMLIATPSEVLQHIEDRNVSCDDIRYVVL 296 (402)
Q Consensus 265 ~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVl 296 (402)
...+|||||.- -..++++..+.+||-
T Consensus 321 g~~~vlvaT~~------l~~Gidip~~~~VI~ 346 (702)
T 2p6r_A 321 GNIKVVVATPT------LAAGVNLPARRVIVR 346 (702)
T ss_dssp TSCCEEEECST------TTSSSCCCBSEEEEC
T ss_pred CCCeEEEECcH------HhccCCCCceEEEEc
Confidence 46799999962 345788888887553
No 231
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=79.61 E-value=4 Score=42.18 Aligned_cols=69 Identities=4% Similarity=-0.001 Sum_probs=48.9
Q ss_pred CCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEE
Q 015712 216 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 295 (402)
Q Consensus 216 ~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lV 295 (402)
+.++||.|+|+.-|..++..+... ++++..++|+..............+|||||. +-..++++. +++||
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~R~~~l~~F~~g~~~VLVaTd------v~~rGiDi~-v~~VI 423 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFDTEYPKTKLTDWDFVVTTD------ISEMGANFR-AGRVI 423 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTTHHHHTTHHHHSCCSEEEECG------GGGTTCCCC-CSEEE
T ss_pred CCCEEEEECChhHHHHHHHHHHHc----CCcEEEEChHHHHHHHHhhcCCCcEEEEECc------HHHcCcccC-ceEEE
Confidence 558999999999999988888765 6788888885332222222345688999996 234567775 77763
No 232
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=79.57 E-value=3.3 Score=43.01 Aligned_cols=79 Identities=19% Similarity=0.189 Sum_probs=46.6
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccC--------CCChHHHHHHh----c-CCccEEEeCchhhHHHh
Q 015712 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENG--------GVSSKALEDVS----N-APIGMLIATPSEVLQHI 281 (402)
Q Consensus 215 ~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~g--------g~~~~~~~~~l----~-~~~~IlV~TP~~l~~~l 281 (402)
.+.++||.|+++.-+..++..+........+++..++| +.+..++...+ . ...+|||+|- +
T Consensus 397 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~------v 470 (696)
T 2ykg_A 397 PETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATS------V 470 (696)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEE------S
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEec------h
Confidence 35689999999999999999888865444477777755 66555544333 2 3578999994 2
Q ss_pred hcCCCCCCCeeEEEEcCC
Q 015712 282 EDRNVSCDDIRYVVLDEA 299 (402)
Q Consensus 282 ~~~~~~l~~l~~lVlDEa 299 (402)
-..++++.++++||.=+.
T Consensus 471 ~~~GiDip~v~~VI~~d~ 488 (696)
T 2ykg_A 471 ADEGIDIAQCNLVILYEY 488 (696)
T ss_dssp SCCC---CCCSEEEEESC
T ss_pred hhcCCcCccCCEEEEeCC
Confidence 346788999999987444
No 233
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=79.18 E-value=1.3 Score=46.24 Aligned_cols=75 Identities=17% Similarity=0.200 Sum_probs=52.1
Q ss_pred CCeEEEEcCchHHHHHHHHHHHHh--hccCCcceeeccCC--------CChHHHHHHhc----CCccEEEeCchhhHHHh
Q 015712 216 HPRAIVLCTTEESADQGFHMAKFI--SHCARLDSSMENGG--------VSSKALEDVSN----APIGMLIATPSEVLQHI 281 (402)
Q Consensus 216 ~~~~Lvl~PtreLa~Qi~~~~~~l--~~~~~~~v~~~~gg--------~~~~~~~~~l~----~~~~IlV~TP~~l~~~l 281 (402)
+.++||.|+++..+..+...+... ....++++..++|+ .+..++...+. ...+|||||- +
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~------~ 473 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATT------V 473 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEEC------S
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEcc------c
Confidence 678999999999999999888764 12236788889998 77666655432 3578999995 2
Q ss_pred hcCCCCCCCeeEEEE
Q 015712 282 EDRNVSCDDIRYVVL 296 (402)
Q Consensus 282 ~~~~~~l~~l~~lVl 296 (402)
-..++++.++++||.
T Consensus 474 ~~~GIDip~v~~VI~ 488 (699)
T 4gl2_A 474 AEEGLDIKECNIVIR 488 (699)
T ss_dssp CCTTSCCCSCCCCEE
T ss_pred cccCCccccCCEEEE
Confidence 345788999998884
No 234
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=78.96 E-value=1.7 Score=41.93 Aligned_cols=45 Identities=16% Similarity=0.158 Sum_probs=30.1
Q ss_pred CeeEEEEcCCCccccCC---CHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCc
Q 015712 290 DIRYVVLDEADTLFDRG---FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 341 (402)
Q Consensus 290 ~l~~lVlDEad~~l~~g---f~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~ 341 (402)
.-.++|+||||.++... +...+..+++..++ .+.-+++.|-.+.+
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk-------~g~~~~~~tQ~~~d 309 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRK-------YNGSLIVISQNVID 309 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGG-------GTCEEEEEESCGGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhh-------hCeEEEEEcCCHHH
Confidence 35789999999998632 45566777766654 25666666666543
No 235
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=78.80 E-value=2.4 Score=37.56 Aligned_cols=49 Identities=8% Similarity=0.238 Sum_probs=30.9
Q ss_pred HHHHHHHHCCCCCCcHHHHHHHHHHHcC----CcEEEEcCCCCChhhHhHHHHHHH
Q 015712 151 EMIKAVEKMGLFVPSEIQCVGIPAVLNG----KSVVLSSGSGSGRTLAYLLPLVQM 202 (402)
Q Consensus 151 ~l~~~l~~~g~~~pt~iQ~~~i~~il~g----~dvli~a~TGsGKTla~~lpil~~ 202 (402)
.|.+.|.-.|+ .+... ..++..++.+ +.+++.||.|+|||..+ ..++..
T Consensus 29 ~I~~~l~yq~~-~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a-~ala~~ 81 (212)
T 1tue_A 29 PIVQFLRYQQI-EFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG-MSFIHF 81 (212)
T ss_dssp HHHHHHHHTTC-CHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH-HHHHHH
T ss_pred HHHHHHHHcCc-CHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH-HHHHHH
Confidence 56777776665 33333 3444555544 35999999999999653 444443
No 236
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=78.44 E-value=7.3 Score=40.70 Aligned_cols=74 Identities=15% Similarity=0.182 Sum_probs=54.9
Q ss_pred eEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHH---HHHHhc---CCccEEEeCchhhHHHhhcCCCCCCCe
Q 015712 218 RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA---LEDVSN---APIGMLIATPSEVLQHIEDRNVSCDDI 291 (402)
Q Consensus 218 ~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~---~~~~l~---~~~~IlV~TP~~l~~~l~~~~~~l~~l 291 (402)
..+|+++|+.-+..++..+... ++.+..++|+.+... +..... ...+|||||. +-..++++ .+
T Consensus 322 g~iIf~~s~~~ie~la~~L~~~----g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATd------i~e~GlDi-~v 390 (677)
T 3rc3_A 322 GDCIVCFSKNDIYSVSRQIEIR----GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATD------AIGMGLNL-SI 390 (677)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECG------GGGSSCCC-CB
T ss_pred CCEEEEcCHHHHHHHHHHHHhc----CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCc------HHHCCcCc-Cc
Confidence 3466699998888877777663 678999999999774 333444 4479999996 23467888 89
Q ss_pred eEEEEcCCCcc
Q 015712 292 RYVVLDEADTL 302 (402)
Q Consensus 292 ~~lVlDEad~~ 302 (402)
++||.-.+..+
T Consensus 391 ~~VI~~~~~k~ 401 (677)
T 3rc3_A 391 RRIIFYSLIKP 401 (677)
T ss_dssp SEEEESCSBC-
T ss_pred cEEEECCcccc
Confidence 99999887654
No 237
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=78.26 E-value=4.7 Score=37.50 Aligned_cols=20 Identities=30% Similarity=0.509 Sum_probs=16.2
Q ss_pred cCCcEEEEcCCCCChhhHhH
Q 015712 177 NGKSVVLSSGSGSGRTLAYL 196 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~~ 196 (402)
.|+-+++.|++|+|||....
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~ 123 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLA 123 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 35678999999999998643
No 238
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=77.69 E-value=7.9 Score=35.96 Aligned_cols=19 Identities=21% Similarity=0.228 Sum_probs=14.7
Q ss_pred CCcEEEEcCCCCChhhHhH
Q 015712 178 GKSVVLSSGSGSGRTLAYL 196 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~~ 196 (402)
+.-+++.+++|+|||....
T Consensus 98 ~~vi~i~G~~G~GKTT~~~ 116 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAG 116 (297)
T ss_dssp SEEEEEECSSCSSTTHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3457788999999997543
No 239
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=77.69 E-value=4.5 Score=37.19 Aligned_cols=43 Identities=16% Similarity=0.074 Sum_probs=31.7
Q ss_pred HHHHHHHHCCCCCCcHHHHHH-HHHHHcCC-----cEEEEcCCCCChhhHhH
Q 015712 151 EMIKAVEKMGLFVPSEIQCVG-IPAVLNGK-----SVVLSSGSGSGRTLAYL 196 (402)
Q Consensus 151 ~l~~~l~~~g~~~pt~iQ~~~-i~~il~g~-----dvli~a~TGsGKTla~~ 196 (402)
.+.+.|+..||. +++... +...+.|+ .+++.||.|+|||+.+.
T Consensus 74 ~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 74 RIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp HHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 788899888884 555443 44555553 49999999999998653
No 240
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=77.64 E-value=0.54 Score=43.85 Aligned_cols=55 Identities=16% Similarity=0.250 Sum_probs=31.7
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HHcCCcEEEEcCCCCChhhHh
Q 015712 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPA-VLNGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~-il~g~dvli~a~TGsGKTla~ 195 (402)
..+|++++-.+.+++.|.+.-. .|.......... +..++.+++.||+|+|||+..
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v~-~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELVQ-YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHH-HHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHH-HHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 4568888777777776665310 000000000000 124678999999999999754
No 241
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=77.15 E-value=3.2 Score=43.32 Aligned_cols=67 Identities=12% Similarity=0.184 Sum_probs=50.4
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEE
Q 015712 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYV 294 (402)
Q Consensus 215 ~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~l 294 (402)
.+.++||.|+|+.-+..++..++.. ++.+..++|+.+...+ .+.+.+|||+|. + + ..+++++ +++|
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~----g~~v~~lHG~l~q~er---~~~~~~VLVATd--V---a-erGIDId-V~~V 460 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGL----GINAVAYYRGLDVSVI---PTIGDVVVVATD--A---L-MTGYTGD-FDSV 460 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECTTSCGGGS---CSSSCEEEEECT--T---H-HHHCCCC-BSEE
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhC----CCcEEEecCCCCHHHH---HhCCCcEEEECC--h---H-HccCCCC-CcEE
Confidence 4668999999999999988877753 6889999999886642 345569999995 1 2 2355665 8877
Q ss_pred E
Q 015712 295 V 295 (402)
Q Consensus 295 V 295 (402)
|
T Consensus 461 I 461 (666)
T 3o8b_A 461 I 461 (666)
T ss_dssp E
T ss_pred E
Confidence 7
No 242
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=76.95 E-value=2.9 Score=39.81 Aligned_cols=19 Identities=32% Similarity=0.508 Sum_probs=16.1
Q ss_pred cCCcEEEEcCCCCChhhHh
Q 015712 177 NGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~ 195 (402)
.+..+++.||+|+|||+..
T Consensus 50 ~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4568999999999999853
No 243
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=76.41 E-value=2.9 Score=42.07 Aligned_cols=34 Identities=29% Similarity=0.384 Sum_probs=25.2
Q ss_pred CCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhH
Q 015712 161 LFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLA 194 (402)
Q Consensus 161 ~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla 194 (402)
+.--..+-..++-++..|.++++.||+|+|||..
T Consensus 24 ivGq~~~i~~l~~al~~~~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 24 LYERSHAIRLCLLAALSGESVFLLGPPGIAKSLI 57 (500)
T ss_dssp CSSCHHHHHHHHHHHHHTCEEEEECCSSSSHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCeeEeecCchHHHHHH
Confidence 4333444455566677889999999999999974
No 244
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=76.05 E-value=3.4 Score=36.33 Aligned_cols=33 Identities=21% Similarity=0.032 Sum_probs=26.9
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHh
Q 015712 163 VPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 163 ~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~ 195 (402)
--+.-|..++..+..|.-+.+.||.|+|||+.+
T Consensus 7 pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 7 PKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp CCSHHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred cCCHhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 334557778888888999999999999999854
No 245
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=75.80 E-value=6.2 Score=41.29 Aligned_cols=77 Identities=13% Similarity=0.176 Sum_probs=54.3
Q ss_pred CCeEEEEcCchHHHHHHHHHHHHhhcc-----------------------------CCcceeeccCCCChHHHHHHh---
Q 015712 216 HPRAIVLCTTEESADQGFHMAKFISHC-----------------------------ARLDSSMENGGVSSKALEDVS--- 263 (402)
Q Consensus 216 ~~~~Lvl~PtreLa~Qi~~~~~~l~~~-----------------------------~~~~v~~~~gg~~~~~~~~~l--- 263 (402)
+.++||.||++.-+..++..+...... ....+..++|+.+...+....
T Consensus 237 ~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f 316 (720)
T 2zj8_A 237 KKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENF 316 (720)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 578999999999999888877653211 123478899999987766443
Q ss_pred -cCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCC
Q 015712 264 -NAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 299 (402)
Q Consensus 264 -~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEa 299 (402)
....+|||||.- -..++++..+.+ |||..
T Consensus 317 ~~g~~~vlvaT~~------l~~Gvdip~~~~-VI~~~ 346 (720)
T 2zj8_A 317 RKGIIKAVVATPT------LSAGINTPAFRV-IIRDI 346 (720)
T ss_dssp HTTSSCEEEECST------TGGGCCCCBSEE-EECCS
T ss_pred HCCCCeEEEECcH------hhccCCCCceEE-EEcCC
Confidence 345789999952 235778888876 45543
No 246
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=75.60 E-value=1.8 Score=41.62 Aligned_cols=25 Identities=20% Similarity=0.452 Sum_probs=20.0
Q ss_pred HHHHHHcCCc--EEEEcCCCCChhhHh
Q 015712 171 GIPAVLNGKS--VVLSSGSGSGRTLAY 195 (402)
Q Consensus 171 ~i~~il~g~d--vli~a~TGsGKTla~ 195 (402)
.+..+++|.| ++..|.||||||..+
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 3556778887 788899999999875
No 247
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=75.49 E-value=3.3 Score=40.95 Aligned_cols=69 Identities=7% Similarity=0.009 Sum_probs=46.6
Q ss_pred CCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCeeEEE
Q 015712 216 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 295 (402)
Q Consensus 216 ~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lV 295 (402)
+.++||.|||+.-+..++..++.. ++.+..++|...............+|||||.- -..++++.+ ++||
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~----g~~v~~lh~~~R~~~~~~f~~g~~~iLVaT~v------~~~GiDip~-~~VI 258 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRA----GKKVIQLNRKSYDTEYPKCKNGDWDFVITTDI------SEMGANFGA-SRVI 258 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEEESTTCCCCCGGGSSSCCCSEEEESSC------C---CCCSC-SEEE
T ss_pred CCCEEEEeCChHHHHHHHHHHHhc----CCcEEecCHHHHHHHHhhccCCCceEEEECCh------HHhCeecCC-CEEE
Confidence 568999999999999988888775 67888888864322222222345789999952 234677777 6665
No 248
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=75.22 E-value=4.6 Score=38.84 Aligned_cols=72 Identities=21% Similarity=0.286 Sum_probs=51.0
Q ss_pred CCeEEEEcCchHHHHHHHHHHHHhhccCCccee-eccCCCChHHHHHHhcCCccEEEe----CchhhHHHhhcCCCCCCC
Q 015712 216 HPRAIVLCTTEESADQGFHMAKFISHCARLDSS-MENGGVSSKALEDVSNAPIGMLIA----TPSEVLQHIEDRNVSCDD 290 (402)
Q Consensus 216 ~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~-~~~gg~~~~~~~~~l~~~~~IlV~----TP~~l~~~l~~~~~~l~~ 290 (402)
+.++||.|+++.-|..++..+... ++.+. .++|. ............+|||| |. +-..++++.+
T Consensus 252 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~h~~--~r~~~~f~~g~~~vLvat~s~T~------~~~~GiDip~ 319 (414)
T 3oiy_A 252 RDGILIFAQTEEEGKELYEYLKRF----KFNVGETWSEF--EKNFEDFKVGKINILIGVQAYYG------KLTRGVDLPE 319 (414)
T ss_dssp CSSEEEEESSHHHHHHHHHHHHHT----TCCEEESSSCH--HHHHHHHHTTSCSEEEEECCTTC------CCCCCCCCTT
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCceehhhcCc--chHHHHHhCCCCeEEEEecCcCc------hhhccCcccc
Confidence 468999999999999988888764 67777 77765 22222223446899999 63 2245788998
Q ss_pred -eeEEEEcCC
Q 015712 291 -IRYVVLDEA 299 (402)
Q Consensus 291 -l~~lVlDEa 299 (402)
+++||.-.+
T Consensus 320 ~v~~VI~~~~ 329 (414)
T 3oiy_A 320 RIKYVIFWGT 329 (414)
T ss_dssp TCCEEEEESC
T ss_pred ccCEEEEECC
Confidence 999885443
No 249
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=75.09 E-value=41 Score=32.84 Aligned_cols=18 Identities=28% Similarity=0.226 Sum_probs=14.4
Q ss_pred CCcEEEEcCCCCChhhHh
Q 015712 178 GKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~ 195 (402)
++-+++.+++|+|||...
T Consensus 98 ~~vi~i~G~~GsGKTT~~ 115 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTA 115 (425)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 445778899999999764
No 250
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=74.65 E-value=4.1 Score=39.96 Aligned_cols=18 Identities=17% Similarity=0.412 Sum_probs=15.1
Q ss_pred cCCcEEEEcCCCCChhhH
Q 015712 177 NGKSVVLSSGSGSGRTLA 194 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla 194 (402)
.|.-+++.||||||||..
T Consensus 166 ~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred cCCeEEEECCCCCCHHHH
Confidence 345689999999999975
No 251
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=74.65 E-value=1.9 Score=41.33 Aligned_cols=21 Identities=33% Similarity=0.488 Sum_probs=18.2
Q ss_pred HHHcCCcEEEEcCCCCChhhH
Q 015712 174 AVLNGKSVVLSSGSGSGRTLA 194 (402)
Q Consensus 174 ~il~g~dvli~a~TGsGKTla 194 (402)
.+..|..++++||||||||..
T Consensus 171 ~i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 171 AVQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHHTTCCEEEEESSSSCHHHH
T ss_pred HHhcCCEEEEECCCCCCHHHH
Confidence 355789999999999999975
No 252
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=73.96 E-value=5.7 Score=39.58 Aligned_cols=79 Identities=16% Similarity=0.135 Sum_probs=38.2
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeecc--------CCCChHHHHHHh---c--CCccEEEeCchhhHHHh
Q 015712 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMEN--------GGVSSKALEDVS---N--APIGMLIATPSEVLQHI 281 (402)
Q Consensus 215 ~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~--------gg~~~~~~~~~l---~--~~~~IlV~TP~~l~~~l 281 (402)
.+.++||.|+++..+..+...+.......++++..++ |+.+..++...+ + ...+|||||- +
T Consensus 389 ~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~------~ 462 (556)
T 4a2p_A 389 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS------V 462 (556)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-------
T ss_pred CCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcC------c
Confidence 4679999999999999999888765333344444443 445544444332 2 3468999994 2
Q ss_pred hcCCCCCCCeeEEEEcCC
Q 015712 282 EDRNVSCDDIRYVVLDEA 299 (402)
Q Consensus 282 ~~~~~~l~~l~~lVlDEa 299 (402)
-..++++.++++||.=+.
T Consensus 463 ~~~GiDip~v~~VI~~d~ 480 (556)
T 4a2p_A 463 ADEGIDIVQCNLVVLYEY 480 (556)
T ss_dssp ----------CEEEEETC
T ss_pred hhcCCCchhCCEEEEeCC
Confidence 235788999999986443
No 253
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=73.70 E-value=2.2 Score=40.43 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=19.3
Q ss_pred HHHHHcCCc--EEEEcCCCCChhhHh
Q 015712 172 IPAVLNGKS--VVLSSGSGSGRTLAY 195 (402)
Q Consensus 172 i~~il~g~d--vli~a~TGsGKTla~ 195 (402)
+..++.|.| ++..|+||||||..+
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 70 VKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCeEEEEEECCCCCCCceEe
Confidence 445678887 788899999999875
No 254
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=73.49 E-value=2.3 Score=48.06 Aligned_cols=32 Identities=19% Similarity=0.265 Sum_probs=25.4
Q ss_pred CCCeeEEEEcCCCccccCCCHHHHHHHHHHhh
Q 015712 288 CDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (402)
Q Consensus 288 l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~ 319 (402)
+++-+.+|+||+=.-+|..-...+...+..+.
T Consensus 570 ~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~ 601 (1321)
T 4f4c_A 570 VRNPKILLLDEATSALDAESEGIVQQALDKAA 601 (1321)
T ss_dssp TTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHHh
Confidence 45778999999999898877777777776654
No 255
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=73.31 E-value=1.6 Score=37.08 Aligned_cols=19 Identities=32% Similarity=0.373 Sum_probs=16.2
Q ss_pred cCCcEEEEcCCCCChhhHh
Q 015712 177 NGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~ 195 (402)
.|+-++++||+|+|||...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5677999999999999754
No 256
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=73.30 E-value=2.2 Score=38.45 Aligned_cols=18 Identities=28% Similarity=0.497 Sum_probs=15.8
Q ss_pred cCCcEEEEcCCCCChhhH
Q 015712 177 NGKSVVLSSGSGSGRTLA 194 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla 194 (402)
.+..+++.|++|+|||..
T Consensus 28 ~~~~vll~G~~GtGKt~l 45 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELI 45 (265)
T ss_dssp SCSCEEEECCTTSCHHHH
T ss_pred CCCCEEEECCCCCcHHHH
Confidence 467899999999999974
No 257
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=72.83 E-value=2.3 Score=41.59 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=20.6
Q ss_pred HHHHHHcCCc--EEEEcCCCCChhhHh
Q 015712 171 GIPAVLNGKS--VVLSSGSGSGRTLAY 195 (402)
Q Consensus 171 ~i~~il~g~d--vli~a~TGsGKTla~ 195 (402)
.+..++.|.| ++..|.||||||..+
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 5666788987 678899999999886
No 258
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=72.82 E-value=16 Score=36.71 Aligned_cols=16 Identities=25% Similarity=0.424 Sum_probs=13.8
Q ss_pred cEEEEcCCCCChhhHh
Q 015712 180 SVVLSSGSGSGRTLAY 195 (402)
Q Consensus 180 dvli~a~TGsGKTla~ 195 (402)
.+++++++|+|||...
T Consensus 103 vI~ivG~~GvGKTTl~ 118 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTC 118 (504)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5888999999999764
No 259
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=72.50 E-value=1.6 Score=40.97 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=19.6
Q ss_pred HHHHHHcCCcEEEEcCCCCChhhHh
Q 015712 171 GIPAVLNGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 171 ~i~~il~g~dvli~a~TGsGKTla~ 195 (402)
+.-.+..|.++++.||+|+|||...
T Consensus 39 l~~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 39 LLIGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHHHHcCCeEEEECCCCCcHHHHH
Confidence 3344556889999999999999743
No 260
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=72.43 E-value=0.75 Score=45.63 Aligned_cols=70 Identities=14% Similarity=0.204 Sum_probs=0.0
Q ss_pred CCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhc----CCccEEEeCchhhHHHhhcCCCCCCCe
Q 015712 216 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSN----APIGMLIATPSEVLQHIEDRNVSCDDI 291 (402)
Q Consensus 216 ~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~----~~~~IlV~TP~~l~~~l~~~~~~l~~l 291 (402)
+.++||.|+++.-+..++..+... ++.+..++|+.+...+...+. ...+|||||. +-..++++.++
T Consensus 333 ~~~~lvF~~s~~~~~~l~~~L~~~----~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~------~~~~GlDip~v 402 (479)
T 3fmp_B 333 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN------VCARGIDVEQV 402 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEeCcHHHHHHHHHHHHhC----CccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcc------ccccCCccccC
Confidence 468999999999998888877664 567888999887666554432 3578999994 22357888889
Q ss_pred eEEE
Q 015712 292 RYVV 295 (402)
Q Consensus 292 ~~lV 295 (402)
.+||
T Consensus 403 ~~VI 406 (479)
T 3fmp_B 403 SVVI 406 (479)
T ss_dssp ----
T ss_pred CEEE
Confidence 9887
No 261
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=72.35 E-value=2.5 Score=40.18 Aligned_cols=26 Identities=15% Similarity=0.387 Sum_probs=21.0
Q ss_pred HHHHHHHcCCc--EEEEcCCCCChhhHh
Q 015712 170 VGIPAVLNGKS--VVLSSGSGSGRTLAY 195 (402)
Q Consensus 170 ~~i~~il~g~d--vli~a~TGsGKTla~ 195 (402)
..+..++.|.| ++..|+||||||..+
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 35666788887 678899999999875
No 262
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=72.32 E-value=2.3 Score=40.64 Aligned_cols=24 Identities=17% Similarity=0.441 Sum_probs=19.0
Q ss_pred HHHHHcCCc--EEEEcCCCCChhhHh
Q 015712 172 IPAVLNGKS--VVLSSGSGSGRTLAY 195 (402)
Q Consensus 172 i~~il~g~d--vli~a~TGsGKTla~ 195 (402)
+..++.|.| ++..|+||||||..+
T Consensus 87 v~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 87 VDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhHhhCCCceEEEEecCCCCCCCeEE
Confidence 445667887 688899999999875
No 263
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=72.20 E-value=6.3 Score=35.93 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCCChhhHh
Q 015712 177 NGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~ 195 (402)
.+..+++.||+|+|||...
T Consensus 49 ~~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3578999999999999753
No 264
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=72.12 E-value=19 Score=39.23 Aligned_cols=77 Identities=10% Similarity=0.109 Sum_probs=58.6
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHh---cCC---ccEEEeCchhhHHHhhcCCCCC
Q 015712 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS---NAP---IGMLIATPSEVLQHIEDRNVSC 288 (402)
Q Consensus 215 ~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l---~~~---~~IlV~TP~~l~~~l~~~~~~l 288 (402)
.+.++||.|+++.-+..+...+.. ..++++..++|+.+...+...+ +.+ ++|||+|. . -..++++
T Consensus 502 ~~~k~iVF~~~~~~~~~l~~~L~~---~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~-v-----~~~GlDl 572 (968)
T 3dmq_A 502 RSQKVLVICAKAATALQLEQVLRE---REGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSE-I-----GSEGRNF 572 (968)
T ss_dssp SSSCCCEECSSTHHHHHHHHHHHT---TTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSC-C-----TTCSSCC
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHH---HcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecc-h-----hhcCCCc
Confidence 467899999999999888777664 2378899999998876655443 333 89999993 2 3457899
Q ss_pred CCeeEEEEcCCC
Q 015712 289 DDIRYVVLDEAD 300 (402)
Q Consensus 289 ~~l~~lVlDEad 300 (402)
.++.+||+-+.+
T Consensus 573 ~~~~~VI~~d~p 584 (968)
T 3dmq_A 573 QFASHMVMFDLP 584 (968)
T ss_dssp TTCCEEECSSCC
T ss_pred ccCcEEEEecCC
Confidence 999999987665
No 265
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=72.08 E-value=2.6 Score=41.24 Aligned_cols=24 Identities=21% Similarity=0.447 Sum_probs=19.2
Q ss_pred HHHHHcCCc--EEEEcCCCCChhhHh
Q 015712 172 IPAVLNGKS--VVLSSGSGSGRTLAY 195 (402)
Q Consensus 172 i~~il~g~d--vli~a~TGsGKTla~ 195 (402)
+..++.|.| ++..|.||||||..+
T Consensus 147 V~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 147 VQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHHhcCCceeEEeecCCCCCCCeEe
Confidence 445678886 678899999999875
No 266
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=72.08 E-value=2.5 Score=40.59 Aligned_cols=25 Identities=16% Similarity=0.381 Sum_probs=19.8
Q ss_pred HHHHHHcCCc--EEEEcCCCCChhhHh
Q 015712 171 GIPAVLNGKS--VVLSSGSGSGRTLAY 195 (402)
Q Consensus 171 ~i~~il~g~d--vli~a~TGsGKTla~ 195 (402)
.+..++.|.| ++..|+||||||..+
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 3455678887 678899999999886
No 267
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=72.06 E-value=2.5 Score=40.47 Aligned_cols=24 Identities=21% Similarity=0.408 Sum_probs=19.4
Q ss_pred HHHHHcCCc--EEEEcCCCCChhhHh
Q 015712 172 IPAVLNGKS--VVLSSGSGSGRTLAY 195 (402)
Q Consensus 172 i~~il~g~d--vli~a~TGsGKTla~ 195 (402)
+..++.|.| ++..|+||||||..+
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 70 IDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHcCCccceeeecCCCCCCCeEE
Confidence 455678886 678899999999876
No 268
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=71.94 E-value=2.5 Score=40.82 Aligned_cols=24 Identities=25% Similarity=0.516 Sum_probs=19.1
Q ss_pred HHHHHcCCc--EEEEcCCCCChhhHh
Q 015712 172 IPAVLNGKS--VVLSSGSGSGRTLAY 195 (402)
Q Consensus 172 i~~il~g~d--vli~a~TGsGKTla~ 195 (402)
+..++.|.| ++..|+||||||..+
T Consensus 94 v~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 94 VDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 445678886 678899999999875
No 269
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=71.86 E-value=2.6 Score=40.70 Aligned_cols=24 Identities=13% Similarity=0.419 Sum_probs=19.1
Q ss_pred HHHHHcCCc--EEEEcCCCCChhhHh
Q 015712 172 IPAVLNGKS--VVLSSGSGSGRTLAY 195 (402)
Q Consensus 172 i~~il~g~d--vli~a~TGsGKTla~ 195 (402)
+..++.|.| ++..|.||||||..+
T Consensus 82 v~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 82 LQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 445678886 688899999999875
No 270
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=71.80 E-value=2.2 Score=41.21 Aligned_cols=25 Identities=20% Similarity=0.436 Sum_probs=20.4
Q ss_pred HHHHHHcCCc--EEEEcCCCCChhhHh
Q 015712 171 GIPAVLNGKS--VVLSSGSGSGRTLAY 195 (402)
Q Consensus 171 ~i~~il~g~d--vli~a~TGsGKTla~ 195 (402)
.+..++.|.| ++..|.||||||..+
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 4566788887 677899999999875
No 271
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=71.77 E-value=2.6 Score=40.55 Aligned_cols=25 Identities=20% Similarity=0.452 Sum_probs=19.7
Q ss_pred HHHHHHcCCc--EEEEcCCCCChhhHh
Q 015712 171 GIPAVLNGKS--VVLSSGSGSGRTLAY 195 (402)
Q Consensus 171 ~i~~il~g~d--vli~a~TGsGKTla~ 195 (402)
.+..++.|.| ++..|+||||||..+
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceEe
Confidence 3555678887 677899999999875
No 272
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=71.71 E-value=2.5 Score=40.71 Aligned_cols=24 Identities=21% Similarity=0.484 Sum_probs=19.1
Q ss_pred HHHHHcCCc--EEEEcCCCCChhhHh
Q 015712 172 IPAVLNGKS--VVLSSGSGSGRTLAY 195 (402)
Q Consensus 172 i~~il~g~d--vli~a~TGsGKTla~ 195 (402)
+..++.|.| ++..|+||||||..+
T Consensus 81 v~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 81 LDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred HHHHhCCCceEEEEeCCCCCCCceEE
Confidence 445678887 688899999999875
No 273
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=71.66 E-value=2.6 Score=40.36 Aligned_cols=24 Identities=33% Similarity=0.534 Sum_probs=19.1
Q ss_pred HHHHHcCCc--EEEEcCCCCChhhHh
Q 015712 172 IPAVLNGKS--VVLSSGSGSGRTLAY 195 (402)
Q Consensus 172 i~~il~g~d--vli~a~TGsGKTla~ 195 (402)
+..++.|.| ++..|.||||||..+
T Consensus 82 v~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 82 IDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCceeEEeecCCCCCCCEEe
Confidence 345678886 688899999999875
No 274
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=71.51 E-value=6.6 Score=47.48 Aligned_cols=46 Identities=17% Similarity=0.190 Sum_probs=32.0
Q ss_pred HHHHHHHHHCCCCCCcHHHHH-HH---HHHHcCCcEEEEcCCCCChhhHhH
Q 015712 150 AEMIKAVEKMGLFVPSEIQCV-GI---PAVLNGKSVVLSSGSGSGRTLAYL 196 (402)
Q Consensus 150 ~~l~~~l~~~g~~~pt~iQ~~-~i---~~il~g~dvli~a~TGsGKTla~~ 196 (402)
..+.+.+.+.|+ .+++.+.. ++ ..+...+.++++||||||||.++-
T Consensus 892 ~~i~~~~~~~~l-~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~ 941 (2695)
T 4akg_A 892 QCLKDAGQRSGF-SMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWK 941 (2695)
T ss_dssp HHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHcCC-cccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHH
Confidence 456677778888 45555432 22 233456789999999999999864
No 275
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=71.44 E-value=2.5 Score=40.62 Aligned_cols=24 Identities=25% Similarity=0.537 Sum_probs=19.0
Q ss_pred HHHHHcCCc--EEEEcCCCCChhhHh
Q 015712 172 IPAVLNGKS--VVLSSGSGSGRTLAY 195 (402)
Q Consensus 172 i~~il~g~d--vli~a~TGsGKTla~ 195 (402)
+..++.|.| ++..|+||||||..+
T Consensus 73 v~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 73 VDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCcceEEEECCCCCCcceEe
Confidence 344667886 688899999999875
No 276
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=71.37 E-value=2.8 Score=40.39 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=19.1
Q ss_pred HHHHHcCCc--EEEEcCCCCChhhHh
Q 015712 172 IPAVLNGKS--VVLSSGSGSGRTLAY 195 (402)
Q Consensus 172 i~~il~g~d--vli~a~TGsGKTla~ 195 (402)
+..++.|.| ++..|+||||||..+
T Consensus 77 v~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 77 VTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCceEEEeecCCCCCCceEE
Confidence 345678886 688899999999875
No 277
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=71.23 E-value=2.9 Score=39.99 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=19.1
Q ss_pred HHHHHcCCc--EEEEcCCCCChhhHh
Q 015712 172 IPAVLNGKS--VVLSSGSGSGRTLAY 195 (402)
Q Consensus 172 i~~il~g~d--vli~a~TGsGKTla~ 195 (402)
+..++.|.| ++..|+||||||..+
T Consensus 76 v~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 76 LEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhhcCeeEEEecccCCCceEee
Confidence 445678887 678899999999875
No 278
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=70.97 E-value=2.2 Score=40.45 Aligned_cols=20 Identities=40% Similarity=0.730 Sum_probs=17.5
Q ss_pred HHcCCcEEEEcCCCCChhhH
Q 015712 175 VLNGKSVVLSSGSGSGRTLA 194 (402)
Q Consensus 175 il~g~dvli~a~TGsGKTla 194 (402)
+..|..+++.|+||||||..
T Consensus 168 i~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHH
T ss_pred ccCCCEEEEECCCCCCHHHH
Confidence 45789999999999999974
No 279
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=70.89 E-value=7.6 Score=41.20 Aligned_cols=79 Identities=16% Similarity=0.165 Sum_probs=41.6
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHHhhccCCcceee--------ccCCCChHHHHHHh---c--CCccEEEeCchhhHHHh
Q 015712 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSM--------ENGGVSSKALEDVS---N--APIGMLIATPSEVLQHI 281 (402)
Q Consensus 215 ~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~--------~~gg~~~~~~~~~l---~--~~~~IlV~TP~~l~~~l 281 (402)
.+.++||.|+++..+..+...+.......++++.. ++|+.+...+...+ + ..++|||+|- +
T Consensus 630 ~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~------~ 703 (797)
T 4a2q_A 630 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS------V 703 (797)
T ss_dssp SSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEEC------C
T ss_pred CCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcC------c
Confidence 46799999999999999999887643333344333 34555554444333 2 3578999994 2
Q ss_pred hcCCCCCCCeeEEEEcCC
Q 015712 282 EDRNVSCDDIRYVVLDEA 299 (402)
Q Consensus 282 ~~~~~~l~~l~~lVlDEa 299 (402)
-..++++..+++||.=+.
T Consensus 704 ~~~GIDlp~v~~VI~yd~ 721 (797)
T 4a2q_A 704 ADEGIDIVQCNLVVLYEY 721 (797)
T ss_dssp -------CCCSEEEEESC
T ss_pred hhcCCCchhCCEEEEeCC
Confidence 235788999999987443
No 280
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=70.88 E-value=1.9 Score=37.14 Aligned_cols=20 Identities=20% Similarity=0.135 Sum_probs=16.6
Q ss_pred HcCCcEEEEcCCCCChhhHh
Q 015712 176 LNGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 176 l~g~dvli~a~TGsGKTla~ 195 (402)
..++.+++.|++|||||...
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLG 42 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHH
Confidence 35778999999999999864
No 281
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=70.81 E-value=2.6 Score=40.48 Aligned_cols=24 Identities=29% Similarity=0.540 Sum_probs=19.2
Q ss_pred HHHHHcCCc--EEEEcCCCCChhhHh
Q 015712 172 IPAVLNGKS--VVLSSGSGSGRTLAY 195 (402)
Q Consensus 172 i~~il~g~d--vli~a~TGsGKTla~ 195 (402)
+..++.|.| ++..|+||||||..+
T Consensus 98 v~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 98 LRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhCCCceEEEEeCCCCCCceeee
Confidence 445678887 688899999999875
No 282
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=70.68 E-value=1.9 Score=37.35 Aligned_cols=19 Identities=37% Similarity=0.560 Sum_probs=15.2
Q ss_pred cCCcEEEEcCCCCChhhHh
Q 015712 177 NGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~ 195 (402)
.|+-++++||+|+|||...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678999999999999864
No 283
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=70.43 E-value=2.7 Score=41.21 Aligned_cols=26 Identities=27% Similarity=0.416 Sum_probs=21.1
Q ss_pred HHHHHHHcCCc--EEEEcCCCCChhhHh
Q 015712 170 VGIPAVLNGKS--VVLSSGSGSGRTLAY 195 (402)
Q Consensus 170 ~~i~~il~g~d--vli~a~TGsGKTla~ 195 (402)
..+..++.|.| ++..|.||||||..+
T Consensus 129 plv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 35677788887 688899999999875
No 284
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=70.14 E-value=2.2 Score=39.04 Aligned_cols=21 Identities=14% Similarity=0.265 Sum_probs=17.4
Q ss_pred HHcCCcEEEEcCCCCChhhHh
Q 015712 175 VLNGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 175 il~g~dvli~a~TGsGKTla~ 195 (402)
+..|.-+++.||||||||..+
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHH
Confidence 346778999999999999753
No 285
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=69.97 E-value=2.6 Score=40.71 Aligned_cols=24 Identities=38% Similarity=0.553 Sum_probs=18.8
Q ss_pred HHHHHcCCc--EEEEcCCCCChhhHh
Q 015712 172 IPAVLNGKS--VVLSSGSGSGRTLAY 195 (402)
Q Consensus 172 i~~il~g~d--vli~a~TGsGKTla~ 195 (402)
+..++.|.| ++..|.||||||..+
T Consensus 93 v~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 93 IEEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCceEEEEeecCCCCCcceec
Confidence 344667886 688899999999875
No 286
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=69.61 E-value=2.4 Score=40.55 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=20.2
Q ss_pred HHHHHHcCCc--EEEEcCCCCChhhHh
Q 015712 171 GIPAVLNGKS--VVLSSGSGSGRTLAY 195 (402)
Q Consensus 171 ~i~~il~g~d--vli~a~TGsGKTla~ 195 (402)
.+..++.|.| ++..|+||||||..+
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 4566678887 677899999999876
No 287
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=69.30 E-value=3.1 Score=41.23 Aligned_cols=24 Identities=17% Similarity=0.380 Sum_probs=19.1
Q ss_pred HHHHHcCCc--EEEEcCCCCChhhHh
Q 015712 172 IPAVLNGKS--VVLSSGSGSGRTLAY 195 (402)
Q Consensus 172 i~~il~g~d--vli~a~TGsGKTla~ 195 (402)
+..++.|.| ++..|.||||||..+
T Consensus 129 v~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 129 LDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 344578887 688899999999876
No 288
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=69.27 E-value=26 Score=31.85 Aligned_cols=96 Identities=7% Similarity=0.076 Sum_probs=63.3
Q ss_pred CCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHh--
Q 015712 186 GSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS-- 263 (402)
Q Consensus 186 ~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l-- 263 (402)
...+||... +.-++..+.. .+.++||.+.++..+..+...+... .++.+..++|+.+...+...+
T Consensus 92 ~~~s~K~~~-L~~ll~~~~~---------~~~kvlIFs~~~~~~~~l~~~L~~~---~g~~~~~l~G~~~~~~R~~~i~~ 158 (271)
T 1z5z_A 92 VRRSGKMIR-TMEIIEEALD---------EGDKIAIFTQFVDMGKIIRNIIEKE---LNTEVPFLYGELSKKERDDIISK 158 (271)
T ss_dssp STTCHHHHH-HHHHHHHHHH---------TTCCEEEEESCHHHHHHHHHHHHHH---HCSCCCEECTTSCHHHHHHHHHH
T ss_pred cccCHHHHH-HHHHHHHHHh---------CCCeEEEEeccHHHHHHHHHHHHHh---cCCcEEEEECCCCHHHHHHHHHH
Confidence 346788643 4445554433 3668999999999888888777652 267788899998876655443
Q ss_pred -cC--Ccc-EEEeCchhhHHHhhcCCCCCCCeeEEEEcCCC
Q 015712 264 -NA--PIG-MLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 300 (402)
Q Consensus 264 -~~--~~~-IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad 300 (402)
+. .+. +|++|- . ...++++..+.++|+=+.+
T Consensus 159 F~~~~~~~v~L~st~-~-----~g~Glnl~~a~~VI~~d~~ 193 (271)
T 1z5z_A 159 FQNNPSVKFIVLSVK-A-----GGFGINLTSANRVIHFDRW 193 (271)
T ss_dssp HHHCTTCCEEEEECC-T-----TCCCCCCTTCSEEEECSCC
T ss_pred hcCCCCCCEEEEehh-h-----hcCCcCcccCCEEEEECCC
Confidence 22 345 455553 2 2457888889888875544
No 289
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=69.03 E-value=0.79 Score=42.27 Aligned_cols=53 Identities=17% Similarity=0.297 Sum_probs=27.3
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHH-HHHHHH--HcCCcEEEEcCCCCChhhHh
Q 015712 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQC-VGIPAV--LNGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~-~~i~~i--l~g~dvli~a~TGsGKTla~ 195 (402)
..+|++++-.+.+.+.|.+.=. .|+.. .++..+ .-.+.+++.||.|+|||+..
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i~---~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAIL---APVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp ------CCHHHHHHHHHHHHHT---HHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 4568898877777777765311 11111 122211 11234999999999999753
No 290
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=68.88 E-value=2.3 Score=40.75 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=19.8
Q ss_pred HHHHHHcCCc--EEEEcCCCCChhhHh
Q 015712 171 GIPAVLNGKS--VVLSSGSGSGRTLAY 195 (402)
Q Consensus 171 ~i~~il~g~d--vli~a~TGsGKTla~ 195 (402)
.+..++.|.| ++..|+||||||..+
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEec
Confidence 4455678887 678899999999876
No 291
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=68.70 E-value=2.3 Score=37.07 Aligned_cols=19 Identities=37% Similarity=0.478 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCCChhhHh
Q 015712 177 NGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~ 195 (402)
.|+-+++.||+|+|||...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4667899999999999753
No 292
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=68.58 E-value=2.2 Score=35.98 Aligned_cols=18 Identities=22% Similarity=0.167 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCCChhhHh
Q 015712 178 GKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~ 195 (402)
++.+++.|++|||||...
T Consensus 5 ~~~i~l~G~~GsGKst~a 22 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVG 22 (185)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 567999999999999864
No 293
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=68.43 E-value=3.4 Score=40.16 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=19.7
Q ss_pred HHHHHcCCc--EEEEcCCCCChhhHhH
Q 015712 172 IPAVLNGKS--VVLSSGSGSGRTLAYL 196 (402)
Q Consensus 172 i~~il~g~d--vli~a~TGsGKTla~~ 196 (402)
+..++.|.| ++..|.||||||..+.
T Consensus 127 v~~~l~G~N~tifAYGQTGSGKTyTM~ 153 (387)
T 2heh_A 127 VQTIFEGGKATCFAYGQTGSGKTHTMG 153 (387)
T ss_dssp HHHHHTTCEEEEEEESCTTSSHHHHHC
T ss_pred HHHHhcCCceEEEEecCCCCCCCeEec
Confidence 445678886 6888999999998753
No 294
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=68.17 E-value=2.2 Score=39.21 Aligned_cols=52 Identities=17% Similarity=0.238 Sum_probs=30.7
Q ss_pred ccccccCCCCHHHHHHHHHCCC---CCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHh
Q 015712 140 VSSFQELGLKAEMIKAVEKMGL---FVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g~---~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~ 195 (402)
..+|+++.-.+.+++.|.+.=. ..|.-+. .....++.+++.||+|+|||+..
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~----~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVILPSVRPELFT----GLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSC----GGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHhhhhCHHHHh----cCCCCCCeEEEECcCCCCHHHHH
Confidence 4568888777777776654310 0000000 00113578999999999999754
No 295
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=68.12 E-value=2.7 Score=40.84 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=18.6
Q ss_pred HHHHcCCc--EEEEcCCCCChhhHh
Q 015712 173 PAVLNGKS--VVLSSGSGSGRTLAY 195 (402)
Q Consensus 173 ~~il~g~d--vli~a~TGsGKTla~ 195 (402)
..++.|.| ++..|+||||||..+
T Consensus 92 ~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 92 RHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HHhhcCceeeEeeecCCCCCCCeEe
Confidence 44668887 678899999999875
No 296
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=67.87 E-value=2.3 Score=36.53 Aligned_cols=20 Identities=35% Similarity=0.416 Sum_probs=16.7
Q ss_pred HcCCcEEEEcCCCCChhhHh
Q 015712 176 LNGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 176 l~g~dvli~a~TGsGKTla~ 195 (402)
..|.-+++.|++|||||...
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35778999999999999753
No 297
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=67.64 E-value=2.3 Score=40.32 Aligned_cols=18 Identities=28% Similarity=0.649 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCCChhhHh
Q 015712 178 GKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~ 195 (402)
++.+++.||+|+|||...
T Consensus 70 ~~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp TCEEEEEESTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 457999999999999753
No 298
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=67.47 E-value=1.3 Score=43.92 Aligned_cols=54 Identities=30% Similarity=0.366 Sum_probs=31.9
Q ss_pred cccccccCCCCHHHHHHHHHCC---CCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHh
Q 015712 139 VVSSFQELGLKAEMIKAVEKMG---LFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 139 ~~~~f~~l~l~~~l~~~l~~~g---~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~ 195 (402)
+..+|++.+--+...+.|.+.= +..|--++... +.--+.+|+.||+|+|||+..
T Consensus 176 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g---~~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 176 GEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVG---IKPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp CSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTSSHHHHH
T ss_pred CCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeEEEECCCCCcHHHHH
Confidence 3557999986666666665431 11111111111 112368999999999999853
No 299
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=67.24 E-value=2.5 Score=35.39 Aligned_cols=18 Identities=22% Similarity=0.492 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCCChhhHh
Q 015712 178 GKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~ 195 (402)
++-++++|++|||||...
T Consensus 3 ~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456899999999999864
No 300
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=67.22 E-value=2 Score=37.22 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=17.4
Q ss_pred HHcCCcEEEEcCCCCChhhHh
Q 015712 175 VLNGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 175 il~g~dvli~a~TGsGKTla~ 195 (402)
+..|+-++++|++|+|||...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHH
Confidence 446788999999999999753
No 301
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=67.14 E-value=1.4 Score=44.37 Aligned_cols=74 Identities=12% Similarity=0.212 Sum_probs=46.3
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHH----HhcCCccEEEeCchhhHHHhhcCCCCCCC
Q 015712 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED----VSNAPIGMLIATPSEVLQHIEDRNVSCDD 290 (402)
Q Consensus 215 ~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~----~l~~~~~IlV~TP~~l~~~l~~~~~~l~~ 290 (402)
.+.++||.|+++.-|..++..+.. .++.+.+++|+.+...+.. ......+|||||. +-..++++.+
T Consensus 356 ~~~~~LVF~~s~~~a~~l~~~L~~----~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~------~l~~GiDip~ 425 (508)
T 3fho_A 356 TIGQSIIFCKKKDTAEEIARRMTA----DGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTN------VIARGIDVSQ 425 (508)
T ss_dssp -CCCEEEBCSSTTTTTHHHHHHTT----TTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----------CCCTT
T ss_pred CCCcEEEEECCHHHHHHHHHHHHh----CCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCC------hhhcCCCccC
Confidence 356899999999999888776654 3677888888876544322 2234678999996 2335788999
Q ss_pred eeEEEEcC
Q 015712 291 IRYVVLDE 298 (402)
Q Consensus 291 l~~lVlDE 298 (402)
+++||...
T Consensus 426 v~~VI~~~ 433 (508)
T 3fho_A 426 VNLVVNYD 433 (508)
T ss_dssp CCEEEC--
T ss_pred CCEEEEEC
Confidence 99988533
No 302
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=66.68 E-value=14 Score=39.98 Aligned_cols=79 Identities=16% Similarity=0.146 Sum_probs=44.0
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeec--------cCCCChHHHHHHh---c--CCccEEEeCchhhHHHh
Q 015712 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSME--------NGGVSSKALEDVS---N--APIGMLIATPSEVLQHI 281 (402)
Q Consensus 215 ~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~--------~gg~~~~~~~~~l---~--~~~~IlV~TP~~l~~~l 281 (402)
.+.++||.|+++..+..+...+.......++++..+ +|+.+..++...+ + ...+|||+|- +
T Consensus 630 ~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~------~ 703 (936)
T 4a2w_A 630 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS------V 703 (936)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEEC------C
T ss_pred CCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeC------c
Confidence 467999999999999999999887533334444444 4555555444333 2 3478999994 2
Q ss_pred hcCCCCCCCeeEEEEcCC
Q 015712 282 EDRNVSCDDIRYVVLDEA 299 (402)
Q Consensus 282 ~~~~~~l~~l~~lVlDEa 299 (402)
-..++++..+++||.=+.
T Consensus 704 ~~eGIDlp~v~~VI~yD~ 721 (936)
T 4a2w_A 704 ADEGIDIVQCNLVVLYEY 721 (936)
T ss_dssp ------CCCCSEEEEESC
T ss_pred hhcCCcchhCCEEEEeCC
Confidence 335788999999987544
No 303
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=65.83 E-value=1.4 Score=39.64 Aligned_cols=53 Identities=17% Similarity=0.176 Sum_probs=30.0
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHH--cCCcEEEEcCCCCChhhHh
Q 015712 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVL--NGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il--~g~dvli~a~TGsGKTla~ 195 (402)
..+|+++.-.+.....+...-.. .. ...++..+- -.+.+++.||+|+|||...
T Consensus 12 ~~~~~~i~g~~~~~~~l~~l~~~--~~-~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 12 KVTFKDVAGAEEAKEELKEIVEF--LK-NPSRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp SCCGGGCCSCHHHHHHHHHHHHH--HH-CHHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHHHHH--HH-CHHHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 45788887766666665543110 00 011222111 1234999999999999753
No 304
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=65.81 E-value=2.9 Score=35.85 Aligned_cols=19 Identities=26% Similarity=0.440 Sum_probs=16.2
Q ss_pred cCCcEEEEcCCCCChhhHh
Q 015712 177 NGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~ 195 (402)
.|.-+.+.||+|+|||...
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 5777899999999999854
No 305
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=65.72 E-value=6 Score=39.86 Aligned_cols=28 Identities=18% Similarity=0.311 Sum_probs=20.2
Q ss_pred cCCcEEEEcCCCCChhhHhHHHHHHHHH
Q 015712 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLR 204 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~~lpil~~l~ 204 (402)
.+.++++.|.||||||.+.-.-++..+.
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~sLl~ 193 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMILSMLY 193 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4678999999999999865444444333
No 306
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=65.57 E-value=5.6 Score=44.27 Aligned_cols=40 Identities=30% Similarity=0.387 Sum_probs=27.9
Q ss_pred EEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchH
Q 015712 181 VVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEE 227 (402)
Q Consensus 181 vli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~Ptre 227 (402)
-+|.|+.|||||.+.+-=+...+... ..+.++|+|||..-
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~-------~~~~~il~lVP~q~ 43 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRA-------PFGKPIIFLVPDQM 43 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHC-------TTSSCEEEECCGGG
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhC-------CCCCcEEEEecCcc
Confidence 37889999999987655555444431 14568999988663
No 307
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=65.47 E-value=3.5 Score=38.41 Aligned_cols=19 Identities=26% Similarity=0.559 Sum_probs=16.1
Q ss_pred cCCcEEEEcCCCCChhhHh
Q 015712 177 NGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~ 195 (402)
.+..+++.|++|+|||+..
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 4568999999999999753
No 308
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=65.46 E-value=3.1 Score=35.01 Aligned_cols=20 Identities=20% Similarity=0.280 Sum_probs=16.8
Q ss_pred HcCCcEEEEcCCCCChhhHh
Q 015712 176 LNGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 176 l~g~dvli~a~TGsGKTla~ 195 (402)
..++.+++.|++|||||...
T Consensus 9 ~~~~~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLG 28 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHH
Confidence 35678999999999999854
No 309
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=65.44 E-value=3.1 Score=36.62 Aligned_cols=21 Identities=24% Similarity=0.254 Sum_probs=16.6
Q ss_pred HHcCCcEEEEcCCCCChhhHh
Q 015712 175 VLNGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 175 il~g~dvli~a~TGsGKTla~ 195 (402)
+..|.-+.+.||+|+|||...
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHH
Confidence 346888999999999999754
No 310
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=65.43 E-value=2.6 Score=34.73 Aligned_cols=16 Identities=19% Similarity=0.372 Sum_probs=13.6
Q ss_pred cEEEEcCCCCChhhHh
Q 015712 180 SVVLSSGSGSGRTLAY 195 (402)
Q Consensus 180 dvli~a~TGsGKTla~ 195 (402)
-++++|++|||||...
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999853
No 311
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=65.37 E-value=2.4 Score=35.90 Aligned_cols=20 Identities=35% Similarity=0.576 Sum_probs=16.5
Q ss_pred HcCCcEEEEcCCCCChhhHh
Q 015712 176 LNGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 176 l~g~dvli~a~TGsGKTla~ 195 (402)
..|.-+++.|+.|||||...
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIA 26 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 35677999999999999753
No 312
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=65.27 E-value=1.6 Score=43.14 Aligned_cols=54 Identities=15% Similarity=0.234 Sum_probs=31.6
Q ss_pred cccccccCCCCHHHHHHHHHCC---CCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHh
Q 015712 139 VVSSFQELGLKAEMIKAVEKMG---LFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 139 ~~~~f~~l~l~~~l~~~l~~~g---~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~ 195 (402)
+-.+|++.|=-+.+.+.|.+.= +..|--++... +.-.+.+|+.||+|+|||+..
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g---~~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIG---IDPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTTTHHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCceEEEECCCCCCHHHHH
Confidence 3467999986666666665430 11111111111 112357999999999999753
No 313
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=65.18 E-value=26 Score=37.45 Aligned_cols=55 Identities=15% Similarity=0.064 Sum_probs=38.9
Q ss_pred CCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcC--CccEEEeCc
Q 015712 216 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNA--PIGMLIATP 274 (402)
Q Consensus 216 ~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~--~~~IlV~TP 274 (402)
+..+||.|.|++-+..+...+.. .|+.+.+++|+....+....... ...|+|+|.
T Consensus 432 ~~pvLVft~s~~~se~Ls~~L~~----~gi~~~vLhg~~~~rEr~ii~~ag~~g~VlIATd 488 (844)
T 1tf5_A 432 GQPVLVGTVAVETSELISKLLKN----KGIPHQVLNAKNHEREAQIIEEAGQKGAVTIATN 488 (844)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHT----TTCCCEEECSSCHHHHHHHHTTTTSTTCEEEEET
T ss_pred CCcEEEEECCHHHHHHHHHHHHH----CCCCEEEeeCCccHHHHHHHHHcCCCCeEEEeCC
Confidence 45699999999999988877665 37888889988654443222221 357999995
No 314
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=64.70 E-value=3 Score=35.41 Aligned_cols=19 Identities=21% Similarity=0.527 Sum_probs=16.1
Q ss_pred cCCcEEEEcCCCCChhhHh
Q 015712 177 NGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~ 195 (402)
.+..+++.|+.|||||...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMA 27 (184)
T ss_dssp SSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678999999999999753
No 315
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=64.69 E-value=2.9 Score=40.44 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=19.6
Q ss_pred HHHHHHcCCc--EEEEcCCCCChhhHh
Q 015712 171 GIPAVLNGKS--VVLSSGSGSGRTLAY 195 (402)
Q Consensus 171 ~i~~il~g~d--vli~a~TGsGKTla~ 195 (402)
.+..++.|.| ++..|.||||||..+
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 4455678886 678899999999875
No 316
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=64.27 E-value=3.3 Score=34.41 Aligned_cols=18 Identities=17% Similarity=0.344 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCCChhhHh
Q 015712 178 GKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~ 195 (402)
+..+++.|+.|||||...
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 567999999999999753
No 317
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=64.25 E-value=3.2 Score=36.25 Aligned_cols=19 Identities=37% Similarity=0.496 Sum_probs=16.3
Q ss_pred cCCcEEEEcCCCCChhhHh
Q 015712 177 NGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~ 195 (402)
.|+-++++||+|+|||...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIK 36 (197)
T ss_dssp SCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECcCCCCHHHHH
Confidence 5778999999999999753
No 318
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=64.24 E-value=2.8 Score=37.55 Aligned_cols=53 Identities=26% Similarity=0.320 Sum_probs=29.6
Q ss_pred ccccccCCCCHHHHHHHHHCC--CCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHh
Q 015712 140 VSSFQELGLKAEMIKAVEKMG--LFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g--~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~ 195 (402)
...|+++.-.+.+.+.+.+.- +..+..++... ....+.+++.||+|+|||...
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLG---GKIPKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHHHHHHHCGGGC--------CCCCEEEEECCTTSCHHHHH
T ss_pred CCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcC---CCCCCeEEEECcCCCCHHHHH
Confidence 456888877777766655420 11111111100 112356999999999999753
No 319
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=64.08 E-value=3.3 Score=39.74 Aligned_cols=20 Identities=20% Similarity=0.408 Sum_probs=16.1
Q ss_pred HcCCcEEEEcCCCCChhhHh
Q 015712 176 LNGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 176 l~g~dvli~a~TGsGKTla~ 195 (402)
..|.-+++.||||||||...
T Consensus 121 ~~~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 34557999999999999753
No 320
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=63.61 E-value=2.9 Score=39.88 Aligned_cols=18 Identities=28% Similarity=0.447 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCCChhhHh
Q 015712 178 GKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~ 195 (402)
++-+++.||||+|||...
T Consensus 40 ~~lIvI~GPTgsGKTtLa 57 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLS 57 (339)
T ss_dssp CEEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 346899999999999753
No 321
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=63.43 E-value=3.3 Score=39.93 Aligned_cols=20 Identities=15% Similarity=0.311 Sum_probs=16.8
Q ss_pred HcCCcEEEEcCCCCChhhHh
Q 015712 176 LNGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 176 l~g~dvli~a~TGsGKTla~ 195 (402)
..|..++++||||||||...
T Consensus 134 ~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 45778999999999999753
No 322
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=63.26 E-value=7.1 Score=39.87 Aligned_cols=27 Identities=19% Similarity=0.328 Sum_probs=20.1
Q ss_pred CCcEEEEcCCCCChhhHhHHHHHHHHH
Q 015712 178 GKSVVLSSGSGSGRTLAYLLPLVQMLR 204 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~~lpil~~l~ 204 (402)
+.+++|.|.||||||.+...-++..+.
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~ 240 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILF 240 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHH
Confidence 457999999999999876544554443
No 323
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=63.24 E-value=3.4 Score=36.61 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=16.9
Q ss_pred HHHcCCcEEEEcCCCCChhhHh
Q 015712 174 AVLNGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 174 ~il~g~dvli~a~TGsGKTla~ 195 (402)
++-.|.-+++.||+|+|||..+
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLI 33 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHH
T ss_pred cCCCCcEEEEECCCCCCHHHHH
Confidence 3557888999999999999854
No 324
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=63.22 E-value=3.1 Score=39.31 Aligned_cols=17 Identities=24% Similarity=0.288 Sum_probs=13.9
Q ss_pred CcEEEEcCCCCChhhHh
Q 015712 179 KSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 179 ~dvli~a~TGsGKTla~ 195 (402)
+-+++.||||+|||...
T Consensus 4 ~~i~i~GptgsGKt~la 20 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTS 20 (322)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCcCCHHHHH
Confidence 34789999999999753
No 325
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=63.18 E-value=1.5 Score=41.65 Aligned_cols=71 Identities=13% Similarity=0.228 Sum_probs=0.0
Q ss_pred CCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhc----CCccEEEeCchhhHHHhhcCCCCCCCe
Q 015712 216 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSN----APIGMLIATPSEVLQHIEDRNVSCDDI 291 (402)
Q Consensus 216 ~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~----~~~~IlV~TP~~l~~~l~~~~~~l~~l 291 (402)
+.++||.|++++-+..++..++.. ++.+..++|+.+...+...+. ...+|||+|.- -..++++.++
T Consensus 259 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~------~~~Gldi~~~ 328 (394)
T 1fuu_A 259 VTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDL------LARGIDVQQV 328 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc----CCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECCh------hhcCCCcccC
Confidence 568999999999998888777653 567888888877665544332 35679999951 2346778888
Q ss_pred eEEEE
Q 015712 292 RYVVL 296 (402)
Q Consensus 292 ~~lVl 296 (402)
+++|.
T Consensus 329 ~~Vi~ 333 (394)
T 1fuu_A 329 SLVIN 333 (394)
T ss_dssp -----
T ss_pred CEEEE
Confidence 88875
No 326
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=63.17 E-value=16 Score=37.24 Aligned_cols=32 Identities=28% Similarity=0.370 Sum_probs=24.9
Q ss_pred CCCeeEEEEcCCCccccCCCHHHHHHHHHHhh
Q 015712 288 CDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (402)
Q Consensus 288 l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~ 319 (402)
+.+-+++++||.-.-+|......+...+..+.
T Consensus 496 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~ 527 (582)
T 3b5x_A 496 LRDAPVLILDEATSALDTESERAIQAALDELQ 527 (582)
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHc
Confidence 45678999999998888777777777776653
No 327
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=62.99 E-value=3.5 Score=35.05 Aligned_cols=17 Identities=29% Similarity=0.628 Sum_probs=14.1
Q ss_pred CcEEEEcCCCCChhhHh
Q 015712 179 KSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 179 ~dvli~a~TGsGKTla~ 195 (402)
+-+.+.||+|+|||...
T Consensus 2 ~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEESSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45789999999999753
No 328
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=62.84 E-value=3.2 Score=39.14 Aligned_cols=16 Identities=25% Similarity=0.358 Sum_probs=13.4
Q ss_pred cEEEEcCCCCChhhHh
Q 015712 180 SVVLSSGSGSGRTLAY 195 (402)
Q Consensus 180 dvli~a~TGsGKTla~ 195 (402)
-++++||||+|||...
T Consensus 12 ~i~i~GptgsGKt~la 27 (316)
T 3foz_A 12 AIFLMGPTASGKTALA 27 (316)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 3788999999999753
No 329
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=62.67 E-value=3.2 Score=35.90 Aligned_cols=16 Identities=31% Similarity=0.667 Sum_probs=13.8
Q ss_pred CcEEEEcCCCCChhhH
Q 015712 179 KSVVLSSGSGSGRTLA 194 (402)
Q Consensus 179 ~dvli~a~TGsGKTla 194 (402)
+=+|++||+|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 3489999999999975
No 330
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=62.54 E-value=8 Score=47.41 Aligned_cols=47 Identities=15% Similarity=0.202 Sum_probs=32.7
Q ss_pred CHHHHHHHHHCCCCCCcHHHHH-HHHH---HHcCCcEEEEcCCCCChhhHhH
Q 015712 149 KAEMIKAVEKMGLFVPSEIQCV-GIPA---VLNGKSVVLSSGSGSGRTLAYL 196 (402)
Q Consensus 149 ~~~l~~~l~~~g~~~pt~iQ~~-~i~~---il~g~dvli~a~TGsGKTla~~ 196 (402)
...+.+.+.++|+ .|++.+.. ++.. +...+.++++||||||||.++-
T Consensus 874 ~~ai~~~~~~~~L-~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~ 924 (3245)
T 3vkg_A 874 RKKIQEIAKQRHL-VTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE 924 (3245)
T ss_dssp HHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH
T ss_pred HHHHHHHHHHcCC-ccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH
Confidence 3556677788898 55554433 3322 3346679999999999999874
No 331
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=62.42 E-value=3.4 Score=34.76 Aligned_cols=18 Identities=33% Similarity=0.420 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCCChhhHh
Q 015712 178 GKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~ 195 (402)
|.-+++.|+.|||||...
T Consensus 3 ~~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 567899999999999753
No 332
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=62.26 E-value=3.2 Score=37.53 Aligned_cols=16 Identities=19% Similarity=0.086 Sum_probs=13.4
Q ss_pred cEEEEcCCCCChhhHh
Q 015712 180 SVVLSSGSGSGRTLAY 195 (402)
Q Consensus 180 dvli~a~TGsGKTla~ 195 (402)
-++++|++|||||...
T Consensus 3 li~I~G~~GSGKSTla 18 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 3789999999999753
No 333
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=61.71 E-value=3.4 Score=36.33 Aligned_cols=18 Identities=28% Similarity=0.554 Sum_probs=14.9
Q ss_pred cCCcEEEEcCCCCChhhH
Q 015712 177 NGKSVVLSSGSGSGRTLA 194 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla 194 (402)
.|+-+++.||||+|||..
T Consensus 33 ~g~~ilI~GpsGsGKStL 50 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSET 50 (205)
T ss_dssp TTEEEEEECCCTTTTHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 356689999999999854
No 334
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=61.66 E-value=3.2 Score=34.93 Aligned_cols=20 Identities=35% Similarity=0.305 Sum_probs=16.6
Q ss_pred cCCcEEEEcCCCCChhhHhH
Q 015712 177 NGKSVVLSSGSGSGRTLAYL 196 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~~ 196 (402)
.|.-+.++|++|||||..+-
T Consensus 8 ~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 46668999999999998654
No 335
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=61.58 E-value=3.9 Score=35.47 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=16.9
Q ss_pred HHHcCCcEEEEcCCCCChhhHh
Q 015712 174 AVLNGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 174 ~il~g~dvli~a~TGsGKTla~ 195 (402)
.+..|.-+.+.||+|+|||..+
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHH
Confidence 5667888999999999999754
No 336
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=61.13 E-value=5.3 Score=38.36 Aligned_cols=19 Identities=32% Similarity=0.448 Sum_probs=16.1
Q ss_pred cCCc--EEEEcCCCCChhhHh
Q 015712 177 NGKS--VVLSSGSGSGRTLAY 195 (402)
Q Consensus 177 ~g~d--vli~a~TGsGKTla~ 195 (402)
.|.+ ++..|+||||||..+
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEE
Confidence 4776 689999999999875
No 337
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=60.98 E-value=4 Score=35.13 Aligned_cols=19 Identities=37% Similarity=0.410 Sum_probs=16.2
Q ss_pred cCCcEEEEcCCCCChhhHh
Q 015712 177 NGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~ 195 (402)
.|.-+++.|+.|||||...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4678999999999999754
No 338
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=60.92 E-value=0.89 Score=51.48 Aligned_cols=25 Identities=24% Similarity=0.545 Sum_probs=18.8
Q ss_pred cCCcEEEEcCCCCChhhHhHHHHHHHH
Q 015712 177 NGKSVVLSSGSGSGRTLAYLLPLVQML 203 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~~lpil~~l 203 (402)
.|.-+-++|+||||||.. +-++..+
T Consensus 1104 ~Ge~vaIVG~SGsGKSTL--~~lL~rl 1128 (1321)
T 4f4c_A 1104 PGQTLALVGPSGCGKSTV--VALLERF 1128 (1321)
T ss_dssp TTCEEEEECSTTSSTTSH--HHHHTTS
T ss_pred CCCEEEEECCCCChHHHH--HHHHhcC
Confidence 578899999999999974 3344433
No 339
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=60.92 E-value=8.7 Score=36.72 Aligned_cols=39 Identities=18% Similarity=0.217 Sum_probs=26.3
Q ss_pred cCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCc
Q 015712 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTT 225 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~Pt 225 (402)
.|.-+++.|+.|+|||... +.++..+.. .+..++|+...
T Consensus 62 ~G~ii~I~G~pGsGKTtLa-l~la~~~~~---------~g~~vlyid~E 100 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLT-LQVIAAAQR---------EGKTCAFIDAE 100 (356)
T ss_dssp TTSEEEEECSTTSSHHHHH-HHHHHHHHH---------TTCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHH-HHHHHHHHH---------CCCeEEEEeCC
Confidence 4677999999999999754 444443333 24567777653
No 340
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=60.50 E-value=1.9 Score=39.40 Aligned_cols=54 Identities=17% Similarity=0.161 Sum_probs=31.1
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHH--cCCcEEEEcCCCCChhhHh
Q 015712 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVL--NGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 139 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~il--~g~dvli~a~TGsGKTla~ 195 (402)
+..+|+++.-.+.+...+...-.. .. ....+..+- -.+.+++.||+|+|||...
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~--~~-~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEF--LK-NPSRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHH--HH-CHHHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHH--HH-CHHHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 345688887777776666554210 00 011122111 1234999999999999753
No 341
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=60.41 E-value=3.9 Score=38.94 Aligned_cols=50 Identities=10% Similarity=0.207 Sum_probs=29.6
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHH-----HcCCcEEEEcCCCCChhhHh
Q 015712 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAV-----LNGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i-----l~g~dvli~a~TGsGKTla~ 195 (402)
..+|++++-.+.+.+.|.+.=. .+. ..|.+ ...+.+++.||+|+|||+..
T Consensus 47 ~~~~~di~G~~~~~~~l~~~v~---~~~---~~~~~~~~~~~~~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 47 NVKWEDVAGLEGAKEALKEAVI---LPV---KFPHLFKGNRKPTSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCCGGGSCCGGGHHHHHHHHTH---HHH---HCGGGGCSSCCCCCCEEEECSTTSCHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHH---HHH---hCHHHHhcCCCCCceEEEECCCCCcHHHHH
Confidence 4568888766666666654310 000 00111 12357999999999999754
No 342
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=60.37 E-value=4.4 Score=37.20 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=14.6
Q ss_pred CcEEEEcCCCCChhhHh
Q 015712 179 KSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 179 ~dvli~a~TGsGKTla~ 195 (402)
..+++.||+|+|||...
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 36999999999999754
No 343
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=60.34 E-value=36 Score=34.32 Aligned_cols=79 Identities=15% Similarity=0.109 Sum_probs=50.6
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHHhhcc----CCcceeeccCCCCh--HHHHHHhcC-Ccc---EEEeCchhhHHHhhcC
Q 015712 215 MHPRAIVLCTTEESADQGFHMAKFISHC----ARLDSSMENGGVSS--KALEDVSNA-PIG---MLIATPSEVLQHIEDR 284 (402)
Q Consensus 215 ~~~~~Lvl~PtreLa~Qi~~~~~~l~~~----~~~~v~~~~gg~~~--~~~~~~l~~-~~~---IlV~TP~~l~~~l~~~ 284 (402)
.+.++||.|+++.-|..++..+...... .+-.+..++|+... ......... ..+ |+|+|- . -..
T Consensus 438 ~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~~r~~~l~~F~~~~~~~~~ilvtt~-~-----l~~ 511 (590)
T 3h1t_A 438 RFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQELETSTPVILTTSQ-L-----LTT 511 (590)
T ss_dssp TTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHHHHHHHHHHHHCTTCCCCCEEEESS-T-----TTT
T ss_pred CCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChHHHHHHHHHHhCCCCCCCEEEEECC-h-----hhc
Confidence 4679999999999999999988765421 12235566776543 111122322 222 667763 1 234
Q ss_pred CCCCCCeeEEEEcCC
Q 015712 285 NVSCDDIRYVVLDEA 299 (402)
Q Consensus 285 ~~~l~~l~~lVlDEa 299 (402)
++++..+.+||++..
T Consensus 512 GiDip~v~~Vi~~~~ 526 (590)
T 3h1t_A 512 GVDAPTCKNVVLARV 526 (590)
T ss_dssp TCCCTTEEEEEEESC
T ss_pred CccchheeEEEEEec
Confidence 789999999998665
No 344
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=60.19 E-value=4 Score=39.01 Aligned_cols=18 Identities=33% Similarity=0.538 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCCChhhHh
Q 015712 178 GKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~ 195 (402)
..++++.||+|+|||...
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 468999999999999754
No 345
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=60.12 E-value=78 Score=26.71 Aligned_cols=133 Identities=14% Similarity=0.029 Sum_probs=48.7
Q ss_pred HHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhccc---CCCCCCCCeEEEEcCchHHHHHHHHHHHHhhccCCc-ceeec
Q 015712 175 VLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEAL---LPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARL-DSSME 250 (402)
Q Consensus 175 il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~---~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~-~v~~~ 250 (402)
.+.|-.+-+.+..|-|=|+.+.+|+...-...... ......+.++||+-........+...+... ++ .+.
T Consensus 17 ~~hgG~i~v~S~~g~Gs~f~~~lP~~~~~~~~~~~~~~~~~~~~~~~ILiVdDd~~~~~~l~~~L~~~----g~~~v~-- 90 (206)
T 3mm4_A 17 GSHMASTDSESETRVKSVRTGRKPIGNPEDEQETSKPSDDEFLRGKRVLVVDDNFISRKVATGKLKKM----GVSEVE-- 90 (206)
T ss_dssp --------------------------------------CTTTTTTCEEEEECSCHHHHHHHHHHHHHT----TCSEEE--
T ss_pred cccCCceeeeccCCCcceeeeccCCCCCcccccccCCCcccccCCCEEEEEeCCHHHHHHHHHHHHHc----CCCeee--
Confidence 44566788889999999999999975432211110 011224557888877766666655555543 22 121
Q ss_pred cCCCChHHHHHHhcCCccEEEeCchhhHHHhhcC--------CCCCCCeeEEEEcCCCccccCCCHHHHHHHHHHhhhhh
Q 015712 251 NGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR--------NVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSA 322 (402)
Q Consensus 251 ~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~--------~~~l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~~~~ 322 (402)
.+.+....+..+... ...-...++||+|= + |-++ -+-++-..++.....
T Consensus 91 -------------------~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~-~-lp~~-~G~el~~~lr~~~~~- 147 (206)
T 3mm4_A 91 -------------------QCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDC-Q-MPEM-DGYEATREIRKVEKS- 147 (206)
T ss_dssp -------------------EESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEES-C-CSSS-CHHHHHHHHHHHHHT-
T ss_pred -------------------eeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcC-C-CCCC-CHHHHHHHHHhhhhh-
Confidence 223444445555432 12223567899883 2 3232 233443334333110
Q ss_pred cccCCCCceEEEEeecc
Q 015712 323 LKSNGQGFQTILVTAAI 339 (402)
Q Consensus 323 ~~~~~~~~q~i~~SATl 339 (402)
......+|++|+..
T Consensus 148 ---~~~~~piI~ls~~~ 161 (206)
T 3mm4_A 148 ---YGVRTPIIAVSGHD 161 (206)
T ss_dssp ---TTCCCCEEEEESSC
T ss_pred ---cCCCCcEEEEECCC
Confidence 11468999999976
No 346
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=60.00 E-value=3.7 Score=33.87 Aligned_cols=16 Identities=6% Similarity=0.030 Sum_probs=13.7
Q ss_pred cEEEEcCCCCChhhHh
Q 015712 180 SVVLSSGSGSGRTLAY 195 (402)
Q Consensus 180 dvli~a~TGsGKTla~ 195 (402)
-+++.|+.|||||...
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999754
No 347
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.94 E-value=2 Score=42.33 Aligned_cols=54 Identities=26% Similarity=0.391 Sum_probs=32.4
Q ss_pred cccccccCCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHh
Q 015712 139 VVSSFQELGLKAEMIKAVEKM---GLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 139 ~~~~f~~l~l~~~l~~~l~~~---g~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~ 195 (402)
+..+|++.|=-+.+.+.|.+. -+..|--++...+ .-.+.+|+.||.|+|||+..
T Consensus 177 p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi---~~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI---KPPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp CCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC---CCCSEEEEESSTTTTHHHHH
T ss_pred CCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCCCceECCCCchHHHHH
Confidence 346899998666666666543 1222222222211 12367999999999999853
No 348
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=59.93 E-value=10 Score=32.16 Aligned_cols=24 Identities=17% Similarity=0.007 Sum_probs=16.1
Q ss_pred cEEEEcCCCCChhhHhHHHHHHHHH
Q 015712 180 SVVLSSGSGSGRTLAYLLPLVQMLR 204 (402)
Q Consensus 180 dvli~a~TGsGKTla~~lpil~~l~ 204 (402)
-+.+.|+.|||||.. +.-++..+.
T Consensus 6 ~i~i~G~sGsGKTTl-~~~L~~~l~ 29 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTL-MEKWVAAAV 29 (169)
T ss_dssp EEEEECCTTSSHHHH-HHHHHHHHH
T ss_pred EEEEECCCCCCHHHH-HHHHHHhhH
Confidence 367899999999974 333444443
No 349
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=59.76 E-value=3.8 Score=40.49 Aligned_cols=18 Identities=33% Similarity=0.652 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCCChhhHh
Q 015712 178 GKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~ 195 (402)
++.+++.||+|+|||+..
T Consensus 63 ~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp TCEEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCcCCHHHHH
Confidence 468999999999999754
No 350
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=59.71 E-value=3.6 Score=34.33 Aligned_cols=18 Identities=33% Similarity=0.333 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCCChhhHh
Q 015712 178 GKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~ 195 (402)
|.-+++.|+.|||||...
T Consensus 8 g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp SEEEEEECSTTSCHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 567899999999999754
No 351
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=59.66 E-value=3.9 Score=34.00 Aligned_cols=16 Identities=19% Similarity=0.237 Sum_probs=13.6
Q ss_pred cEEEEcCCCCChhhHh
Q 015712 180 SVVLSSGSGSGRTLAY 195 (402)
Q Consensus 180 dvli~a~TGsGKTla~ 195 (402)
-++++|+.|||||...
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 4789999999999753
No 352
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=59.59 E-value=3.7 Score=37.92 Aligned_cols=16 Identities=19% Similarity=0.430 Sum_probs=14.0
Q ss_pred CcEEEEcCCCCChhhH
Q 015712 179 KSVVLSSGSGSGRTLA 194 (402)
Q Consensus 179 ~dvli~a~TGsGKTla 194 (402)
+.+++.||+|+|||..
T Consensus 37 ~~lLl~GppGtGKT~l 52 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQ 52 (293)
T ss_dssp SEEEEEECTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4689999999999974
No 353
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=58.69 E-value=33 Score=34.27 Aligned_cols=43 Identities=12% Similarity=0.159 Sum_probs=28.4
Q ss_pred CCeeEEEEcCCCccccCC-----CHHHHHHHHHHhhhhhcccCCCCceEEEEeecc
Q 015712 289 DDIRYVVLDEADTLFDRG-----FGPEISKILNPLKDSALKSNGQGFQTILVTAAI 339 (402)
Q Consensus 289 ~~l~~lVlDEad~~l~~g-----f~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl 339 (402)
.+.++||+| -=.-+|.. ....+..++..+.. .+.-+|+.|-..
T Consensus 370 ~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~-------~g~tvilvsh~~ 417 (525)
T 1tf7_A 370 FKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQ-------EEITGLFTNTSD 417 (525)
T ss_dssp TCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHH-------TTCEEEEEEECS
T ss_pred hCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHh-------CCCEEEEEECcc
Confidence 567899999 55556666 56667777776653 245566666554
No 354
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=58.21 E-value=5.3 Score=36.18 Aligned_cols=21 Identities=43% Similarity=0.518 Sum_probs=17.9
Q ss_pred HHcCCcEEEEcCCCCChhhHh
Q 015712 175 VLNGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 175 il~g~dvli~a~TGsGKTla~ 195 (402)
.+.|..+++.|++|+|||...
T Consensus 45 ~l~g~~i~l~G~~GsGKSTl~ 65 (250)
T 3nwj_A 45 YLNGRSMYLVGMMGSGKTTVG 65 (250)
T ss_dssp HHTTCCEEEECSTTSCHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHH
Confidence 345899999999999999864
No 355
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=58.01 E-value=4.3 Score=38.62 Aligned_cols=52 Identities=13% Similarity=0.166 Sum_probs=30.2
Q ss_pred ccccccCCCCHHHHHHHHHCCC---CCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHh
Q 015712 140 VSSFQELGLKAEMIKAVEKMGL---FVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g~---~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~ 195 (402)
..+|+++.-.+.+++.|.+.=. ..+..+.. .....+.+++.||+|+|||+..
T Consensus 80 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~----~~~~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 80 PVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTG----LRGPPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCG----GGSCCSEEEEESSTTSSHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhhChHhHhh----ccCCCceEEEECCCCCCHHHHH
Confidence 4578887766666666654310 00000000 0123568999999999999754
No 356
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=57.96 E-value=3.4 Score=34.80 Aligned_cols=19 Identities=21% Similarity=0.436 Sum_probs=15.8
Q ss_pred cCCcEEEEcCCCCChhhHh
Q 015712 177 NGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~ 195 (402)
.|..+++.|+.|||||...
T Consensus 3 ~g~~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQA 21 (186)
T ss_dssp CEEEEEEECCTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4567899999999999754
No 357
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=57.66 E-value=11 Score=33.74 Aligned_cols=20 Identities=40% Similarity=0.720 Sum_probs=16.0
Q ss_pred cCC-cEEEEcCCCCChhhHhH
Q 015712 177 NGK-SVVLSSGSGSGRTLAYL 196 (402)
Q Consensus 177 ~g~-dvli~a~TGsGKTla~~ 196 (402)
.|+ ++++.++.|+|||...+
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~ 24 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAML 24 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHH
Confidence 344 68999999999998753
No 358
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=57.51 E-value=5.7 Score=37.07 Aligned_cols=18 Identities=22% Similarity=0.338 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCCChhhHh
Q 015712 178 GKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~ 195 (402)
+..+++.||+|+|||...
T Consensus 45 ~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GCCEEEECCGGGCTTHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 457999999999999753
No 359
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=57.28 E-value=2.7 Score=44.78 Aligned_cols=81 Identities=14% Similarity=0.293 Sum_probs=50.7
Q ss_pred CCCeEEEEcCchHHHH-----HHHHHHHHhhc-c-CCcceeeccCCCChHHHHHH---h-cCCccEEEeCchhhHHHhhc
Q 015712 215 MHPRAIVLCTTEESAD-----QGFHMAKFISH-C-ARLDSSMENGGVSSKALEDV---S-NAPIGMLIATPSEVLQHIED 283 (402)
Q Consensus 215 ~~~~~Lvl~PtreLa~-----Qi~~~~~~l~~-~-~~~~v~~~~gg~~~~~~~~~---l-~~~~~IlV~TP~~l~~~l~~ 283 (402)
.+.+++|+||+.+-.. .+......+.. . .++.+..++|+.+..++... . ....+|||||. +-.
T Consensus 577 ~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~------vie 650 (780)
T 1gm5_A 577 RGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTT------VIE 650 (780)
T ss_dssp TSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSS------CCC
T ss_pred cCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECC------CCC
Confidence 4678999999765321 12223333433 2 36789999999775544333 2 34679999995 234
Q ss_pred CCCCCCCeeEEEEcCCCc
Q 015712 284 RNVSCDDIRYVVLDEADT 301 (402)
Q Consensus 284 ~~~~l~~l~~lVlDEad~ 301 (402)
.++++.+++++|+..+++
T Consensus 651 ~GIDiP~v~~VIi~d~~r 668 (780)
T 1gm5_A 651 VGIDVPRANVMVIENPER 668 (780)
T ss_dssp SCSCCTTCCEEEBCSCSS
T ss_pred ccccCCCCCEEEEeCCCC
Confidence 688999999999988875
No 360
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=57.24 E-value=6.3 Score=34.15 Aligned_cols=30 Identities=17% Similarity=0.129 Sum_probs=21.4
Q ss_pred cHHHHHHHHHHHcCCcEEEEcCCCCChhhHh
Q 015712 165 SEIQCVGIPAVLNGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 165 t~iQ~~~i~~il~g~dvli~a~TGsGKTla~ 195 (402)
++.++.. ..+..|.-+++.|+.|+|||...
T Consensus 13 ~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 13 TRSERTE-LRNQRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp CHHHHHH-HHTSSCEEEEEECSTTSSHHHHH
T ss_pred CHHHhhc-ccCCCCCEEEEECCCCCCHHHHH
Confidence 4454444 33456778999999999999754
No 361
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=56.65 E-value=2.5 Score=38.07 Aligned_cols=18 Identities=39% Similarity=0.554 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCCChhhHh
Q 015712 178 GKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~ 195 (402)
.+.+++.||+|+|||...
T Consensus 44 ~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CSCCCCBCSSCSSHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 356999999999999754
No 362
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=56.57 E-value=4.3 Score=35.79 Aligned_cols=20 Identities=45% Similarity=0.469 Sum_probs=12.7
Q ss_pred HcCCcEEEEcCCCCChhhHh
Q 015712 176 LNGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 176 l~g~dvli~a~TGsGKTla~ 195 (402)
..|.-+.+.||+|+|||...
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp ECCCEEEEECSCC----CHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35777899999999999864
No 363
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=56.56 E-value=13 Score=41.43 Aligned_cols=59 Identities=12% Similarity=0.097 Sum_probs=40.5
Q ss_pred cEEEEcCCCCChhhHhHHHHHHHHHhhcccCC--CCCCCCeEEEEcCchHHHHHHHHHHHH
Q 015712 180 SVVLSSGSGSGRTLAYLLPLVQMLRRDEALLP--MKPMHPRAIVLCTTEESADQGFHMAKF 238 (402)
Q Consensus 180 dvli~a~TGsGKTla~~lpil~~l~~~~~~~~--~~~~~~~~Lvl~PtreLa~Qi~~~~~~ 238 (402)
..+|.|.-|||||.+..-=++..+.......+ ......++|+|+=|+.-|..+...+..
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~ 78 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRS 78 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHH
Confidence 45999999999999877777776654210000 011245899999999988887776654
No 364
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=56.31 E-value=12 Score=34.88 Aligned_cols=18 Identities=28% Similarity=0.525 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCCChhhHh
Q 015712 178 GKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~ 195 (402)
|.-+.+.||+|+|||...
T Consensus 102 g~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SSEEEEECSTTSSHHHHH
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 566889999999999753
No 365
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=56.25 E-value=25 Score=38.92 Aligned_cols=74 Identities=12% Similarity=0.087 Sum_probs=50.3
Q ss_pred CCeEEEEcCchHHHHHHHHHHHHhhccC-----------------------------------CcceeeccCCCChHHHH
Q 015712 216 HPRAIVLCTTEESADQGFHMAKFISHCA-----------------------------------RLDSSMENGGVSSKALE 260 (402)
Q Consensus 216 ~~~~Lvl~PtreLa~Qi~~~~~~l~~~~-----------------------------------~~~v~~~~gg~~~~~~~ 260 (402)
+.++||.|+++.-|..++..+..+.... ...+..++|+.....+.
T Consensus 441 ~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~ 520 (1108)
T 3l9o_A 441 YNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKE 520 (1108)
T ss_dssp CCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHH
T ss_pred CCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHH
Confidence 5689999999999988877664432111 11278889999877765
Q ss_pred HHh----cCCccEEEeCchhhHHHhhcCCCCCCCeeEEE
Q 015712 261 DVS----NAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 295 (402)
Q Consensus 261 ~~l----~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lV 295 (402)
..+ ....+|||||.- -..++++..+.+||
T Consensus 521 ~v~~~F~~G~ikVLVAT~v------la~GIDiP~v~~VI 553 (1108)
T 3l9o_A 521 VIEILFQEGFLKVLFATET------FSIGLNMPAKTVVF 553 (1108)
T ss_dssp HHHHHHHHTCCCEEEEESC------CCSCCCC--CEEEE
T ss_pred HHHHHHhCCCCeEEEECcH------HhcCCCCCCceEEE
Confidence 443 346789999962 34578888888865
No 366
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=55.25 E-value=5.1 Score=37.88 Aligned_cols=16 Identities=19% Similarity=0.277 Sum_probs=13.8
Q ss_pred cEEEEcCCCCChhhHh
Q 015712 180 SVVLSSGSGSGRTLAY 195 (402)
Q Consensus 180 dvli~a~TGsGKTla~ 195 (402)
-++++||||||||...
T Consensus 7 ~i~i~GptGsGKTtla 22 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLA 22 (323)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999753
No 367
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=55.24 E-value=4.8 Score=34.58 Aligned_cols=19 Identities=26% Similarity=0.361 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCCChhhHh
Q 015712 177 NGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~ 195 (402)
.|.-+++.|++|||||...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4677899999999999754
No 368
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=55.04 E-value=15 Score=40.45 Aligned_cols=77 Identities=17% Similarity=0.172 Sum_probs=51.2
Q ss_pred CCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCCe-eEE
Q 015712 216 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDI-RYV 294 (402)
Q Consensus 216 ~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~l-~~l 294 (402)
+.++||.|+|+.-|..++..+... +++..++|+.... .........+|||||... .+ +-..++++.++ ++|
T Consensus 275 ~~~~LVF~~t~~~a~~l~~~L~~~-----~~v~~lhg~~~~~-l~~F~~G~~~VLVaTas~-Td-v~~rGIDip~VI~~V 346 (1054)
T 1gku_B 275 GTGGIIYARTGEEAEEIYESLKNK-----FRIGIVTATKKGD-YEKFVEGEIDHLIGTAHY-YG-TLVRGLDLPERIRFA 346 (1054)
T ss_dssp CSCEEEEESSHHHHHHHHHTTTTS-----SCEEECTTSSSHH-HHHHHHTSCSEEEEECC--------CCSCCTTTCCEE
T ss_pred CCCEEEEEcCHHHHHHHHHHHhhc-----cCeeEEeccHHHH-HHHHHcCCCcEEEEecCC-CC-eeEeccccCCcccEE
Confidence 568999999999988877655443 7888999987422 222334567999994100 01 12348899995 999
Q ss_pred EEcCCC
Q 015712 295 VLDEAD 300 (402)
Q Consensus 295 VlDEad 300 (402)
|.=.+.
T Consensus 347 I~~~~P 352 (1054)
T 1gku_B 347 VFVGCP 352 (1054)
T ss_dssp EEESCC
T ss_pred EEeCCC
Confidence 876666
No 369
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=54.71 E-value=5.8 Score=33.50 Aligned_cols=20 Identities=20% Similarity=0.385 Sum_probs=16.5
Q ss_pred HcCCcEEEEcCCCCChhhHh
Q 015712 176 LNGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 176 l~g~dvli~a~TGsGKTla~ 195 (402)
..+.-+++.|+.|||||...
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQC 26 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35677999999999999853
No 370
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=54.64 E-value=5.8 Score=33.82 Aligned_cols=19 Identities=26% Similarity=0.361 Sum_probs=16.1
Q ss_pred cCCcEEEEcCCCCChhhHh
Q 015712 177 NGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~ 195 (402)
.|.-+++.|+.|||||...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQC 21 (204)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 4677999999999999854
No 371
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=54.43 E-value=4.1 Score=34.51 Aligned_cols=17 Identities=18% Similarity=0.442 Sum_probs=14.1
Q ss_pred CcEEEEcCCCCChhhHh
Q 015712 179 KSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 179 ~dvli~a~TGsGKTla~ 195 (402)
.-+++.|++|+|||...
T Consensus 3 ~ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 34789999999999854
No 372
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=54.40 E-value=5.5 Score=32.78 Aligned_cols=15 Identities=20% Similarity=0.344 Sum_probs=13.1
Q ss_pred cEEEEcCCCCChhhH
Q 015712 180 SVVLSSGSGSGRTLA 194 (402)
Q Consensus 180 dvli~a~TGsGKTla 194 (402)
-.++.||+|+|||..
T Consensus 25 ~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 368999999999986
No 373
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=54.18 E-value=5.5 Score=37.94 Aligned_cols=16 Identities=25% Similarity=0.316 Sum_probs=13.6
Q ss_pred cEEEEcCCCCChhhHh
Q 015712 180 SVVLSSGSGSGRTLAY 195 (402)
Q Consensus 180 dvli~a~TGsGKTla~ 195 (402)
-++|+||||||||...
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 4789999999999753
No 374
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=54.09 E-value=5.5 Score=34.70 Aligned_cols=50 Identities=22% Similarity=0.371 Sum_probs=28.1
Q ss_pred eeEEEEcCCCccccCC-CHHHHHHHHHHhhhhhcccCCCCceEEEEeeccCchhHH
Q 015712 291 IRYVVLDEADTLFDRG-FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 345 (402)
Q Consensus 291 l~~lVlDEad~~l~~g-f~~~i~~il~~l~~~~~~~~~~~~q~i~~SATl~~~v~~ 345 (402)
-.+|||||||.++... .......++..+.. ......++|+++.. +..+..
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e~~rll~~l~~----~r~~~~~iil~tq~-~~~l~~ 138 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSKIPENVQWLNT----HRHQGIDIFVLTQG-PKLLDQ 138 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCCCCHHHHGGGG----TTTTTCEEEEEESC-GGGBCH
T ss_pred ceEEEEEChhhhccCccccchhHHHHHHHHh----cCcCCeEEEEECCC-HHHHhH
Confidence 4589999999985432 11111234444432 12346789888887 433333
No 375
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=53.98 E-value=5 Score=33.80 Aligned_cols=18 Identities=11% Similarity=0.265 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCCChhhHh
Q 015712 178 GKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~ 195 (402)
+.-+++.|+.|||||...
T Consensus 5 ~~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLS 22 (193)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456899999999999853
No 376
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=53.87 E-value=5.5 Score=33.37 Aligned_cols=16 Identities=19% Similarity=0.266 Sum_probs=13.6
Q ss_pred cEEEEcCCCCChhhHh
Q 015712 180 SVVLSSGSGSGRTLAY 195 (402)
Q Consensus 180 dvli~a~TGsGKTla~ 195 (402)
-.++.|++|+|||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4689999999999754
No 377
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=53.78 E-value=7.7 Score=40.76 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=20.6
Q ss_pred HHHHHHcCCc--EEEEcCCCCChhhHh
Q 015712 171 GIPAVLNGKS--VVLSSGSGSGRTLAY 195 (402)
Q Consensus 171 ~i~~il~g~d--vli~a~TGsGKTla~ 195 (402)
.+..+++|.| ++..|.||||||...
T Consensus 454 ~v~~~~~G~n~~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 454 LIQCSLDGTNVCVFAYGQTGSGKTFTM 480 (715)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCceEEEEccCCCCCchhhcc
Confidence 5677889987 677799999999875
No 378
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=53.74 E-value=5.5 Score=34.11 Aligned_cols=24 Identities=8% Similarity=0.246 Sum_probs=17.5
Q ss_pred EEeecccHHHHHHHHHHHHhhccc
Q 015712 374 VFDLTESQDALKKKVVEAMDSLHL 397 (402)
Q Consensus 374 ~~~~~e~~~~~~~~l~~~l~~l~~ 397 (402)
++......++..+++.+++...++
T Consensus 159 ~Id~~~~~~e~~~~I~~~l~~~~~ 182 (202)
T 3t61_A 159 AVDVAQPLAEIVREALAGLARLAE 182 (202)
T ss_dssp EEESSSCHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHHhhh
Confidence 344445678888888888887766
No 379
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=53.26 E-value=81 Score=34.56 Aligned_cols=26 Identities=12% Similarity=0.094 Sum_probs=23.0
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHHhh
Q 015712 215 MHPRAIVLCTTEESADQGFHMAKFIS 240 (402)
Q Consensus 215 ~~~~~Lvl~PtreLa~Qi~~~~~~l~ 240 (402)
.+.++||+|++++-|...+..+..+.
T Consensus 536 ~g~kamVf~~S~~~A~~~~~~l~~~~ 561 (1038)
T 2w00_A 536 KGFNAMLAVSSVDAAKAYYATFKRLQ 561 (1038)
T ss_dssp CCCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhhh
Confidence 45689999999999999999998875
No 380
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=52.86 E-value=5.7 Score=38.80 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=15.6
Q ss_pred cEEEEcCCCCChhhHhHHHHHHH
Q 015712 180 SVVLSSGSGSGRTLAYLLPLVQM 202 (402)
Q Consensus 180 dvli~a~TGsGKTla~~lpil~~ 202 (402)
-++|.||||+|||... .-+...
T Consensus 4 ~i~i~GptgsGKttla-~~La~~ 25 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLS-IQLAQK 25 (409)
T ss_dssp EEEEEECSSSSHHHHH-HHHHHH
T ss_pred EEEEECcchhhHHHHH-HHHHHH
Confidence 3689999999999653 333333
No 381
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=52.77 E-value=15 Score=40.55 Aligned_cols=78 Identities=19% Similarity=0.271 Sum_probs=53.7
Q ss_pred CCeEEEEcCchHHHHHHHHHHHHhhccCCccee-eccCCCChHHHHHHhcCCccEEEeCchhhHHHhhcCCCCCCC-eeE
Q 015712 216 HPRAIVLCTTEESADQGFHMAKFISHCARLDSS-MENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDD-IRY 293 (402)
Q Consensus 216 ~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~-~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~-l~~ 293 (402)
+.++||.|+++.-+..++..+... ++.+. .++|. ............+|||||... .+ +-.+++++.+ +++
T Consensus 309 ~~~~LVF~~s~~~a~~l~~~L~~~----g~~~~~~lhg~--rr~l~~F~~G~~~VLVatas~-Td-vlarGIDip~~V~~ 380 (1104)
T 4ddu_A 309 RDGILIFAQTEEEGKELYEYLKRF----KFNVGETWSEF--EKNFEDFKVGKINILIGVQAY-YG-KLTRGVDLPERIKY 380 (1104)
T ss_dssp CSSEEEEESSSHHHHHHHHHHHHT----TCCEEESSSSH--HHHHHHHHHTSCSEEEEETTT-HH-HHCCSCCCTTTCCE
T ss_pred CCCEEEEECcHHHHHHHHHHHHhC----CCCeeeEecCc--HHHHHHHHCCCCCEEEEecCC-CC-eeEecCcCCCCCCE
Confidence 468999999999999988888764 67777 77773 112222234568999993110 01 2346889999 999
Q ss_pred EEEcCCCc
Q 015712 294 VVLDEADT 301 (402)
Q Consensus 294 lVlDEad~ 301 (402)
||.=++-.
T Consensus 381 VI~~d~P~ 388 (1104)
T 4ddu_A 381 VIFWGTPS 388 (1104)
T ss_dssp EEEESCCE
T ss_pred EEEECCCC
Confidence 99866665
No 382
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=52.48 E-value=5.7 Score=34.39 Aligned_cols=18 Identities=33% Similarity=0.499 Sum_probs=14.9
Q ss_pred cCCcEEEEcCCCCChhhH
Q 015712 177 NGKSVVLSSGSGSGRTLA 194 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla 194 (402)
.|.-+.+.||+|||||..
T Consensus 21 ~g~~v~I~G~sGsGKSTl 38 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTL 38 (208)
T ss_dssp SCEEEEEECCTTSCTHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 355688999999999974
No 383
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=52.39 E-value=5.8 Score=36.56 Aligned_cols=17 Identities=29% Similarity=0.448 Sum_probs=14.4
Q ss_pred CcEEEEcCCCCChhhHh
Q 015712 179 KSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 179 ~dvli~a~TGsGKTla~ 195 (402)
.-++++|++|||||...
T Consensus 34 ~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp EEEEEECCTTSCTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45899999999999754
No 384
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=52.00 E-value=27 Score=29.39 Aligned_cols=12 Identities=42% Similarity=0.590 Sum_probs=9.0
Q ss_pred EcCCCCChhhHh
Q 015712 184 SSGSGSGRTLAY 195 (402)
Q Consensus 184 ~a~TGsGKTla~ 195 (402)
.+..|+|||...
T Consensus 8 s~kgG~GKTt~a 19 (206)
T 4dzz_A 8 NPKGGSGKTTAV 19 (206)
T ss_dssp CSSTTSSHHHHH
T ss_pred eCCCCccHHHHH
Confidence 356789999864
No 385
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=51.92 E-value=8.8 Score=33.37 Aligned_cols=16 Identities=31% Similarity=0.584 Sum_probs=13.7
Q ss_pred cEEEEcCCCCChhhHh
Q 015712 180 SVVLSSGSGSGRTLAY 195 (402)
Q Consensus 180 dvli~a~TGsGKTla~ 195 (402)
-.++.|+.|||||+..
T Consensus 7 i~l~tG~pGsGKT~~a 22 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKM 22 (199)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEeCCCCCHHHHH
Confidence 4689999999999854
No 386
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=51.88 E-value=5.8 Score=37.97 Aligned_cols=16 Identities=19% Similarity=0.493 Sum_probs=13.9
Q ss_pred cEEEEcCCCCChhhHh
Q 015712 180 SVVLSSGSGSGRTLAY 195 (402)
Q Consensus 180 dvli~a~TGsGKTla~ 195 (402)
-.+++||+|+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4779999999999875
No 387
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=51.87 E-value=13 Score=34.44 Aligned_cols=19 Identities=16% Similarity=0.368 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCCChhhHh
Q 015712 177 NGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~ 195 (402)
.|.-+.+.|++|+|||...
T Consensus 99 ~g~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp SCEEEEEECCTTSCHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3556889999999999864
No 388
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=51.53 E-value=6 Score=33.12 Aligned_cols=19 Identities=37% Similarity=0.466 Sum_probs=15.7
Q ss_pred cCCcEEEEcCCCCChhhHh
Q 015712 177 NGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~ 195 (402)
.|.-+++.|+.|||||...
T Consensus 4 ~g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4667899999999999753
No 389
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=51.51 E-value=6.5 Score=34.42 Aligned_cols=19 Identities=21% Similarity=0.242 Sum_probs=15.4
Q ss_pred cCCcEEEEcCCCCChhhHh
Q 015712 177 NGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~ 195 (402)
.+.-+++.|++|||||...
T Consensus 6 ~~~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp -CCEEEEEECTTSSHHHHH
T ss_pred cCcEEEEECCCCCCHHHHH
Confidence 3467999999999999853
No 390
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=51.50 E-value=5.8 Score=33.33 Aligned_cols=18 Identities=22% Similarity=0.368 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCCChhhHh
Q 015712 178 GKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~ 195 (402)
+.-+++.|+.|||||...
T Consensus 3 ~~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 446899999999999864
No 391
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=51.30 E-value=9.9 Score=38.99 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=19.2
Q ss_pred HHHHcCCcEEEEcCCCCChhhHh
Q 015712 173 PAVLNGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 173 ~~il~g~dvli~a~TGsGKTla~ 195 (402)
..+..|..+++.||+|+|||...
T Consensus 55 ~~i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 55 TAANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHHTTCCEEEECCTTSSHHHHH
T ss_pred ccccCCCEEEEEeCCCCCHHHHH
Confidence 34567899999999999999753
No 392
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=50.92 E-value=7.9 Score=32.70 Aligned_cols=19 Identities=26% Similarity=0.471 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCCChhhHh
Q 015712 177 NGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~ 195 (402)
.+.-+++.|+.|||||...
T Consensus 11 ~~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp HSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4567999999999999753
No 393
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=50.87 E-value=6.2 Score=33.97 Aligned_cols=19 Identities=21% Similarity=0.298 Sum_probs=15.1
Q ss_pred cCCcEEEEcCCCCChhhHh
Q 015712 177 NGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~ 195 (402)
.|.-+.+.|++|||||...
T Consensus 5 ~~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CCEEEEEEESTTSSHHHHH
T ss_pred CcEEEEEECCCCCCHHHHH
Confidence 3455789999999999753
No 394
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=50.56 E-value=68 Score=34.94 Aligned_cols=79 Identities=14% Similarity=0.132 Sum_probs=52.9
Q ss_pred CCeEEEEcCchHHHHHHHHHHHHhhc-----------------------------------cCCcceeeccCCCChHHHH
Q 015712 216 HPRAIVLCTTEESADQGFHMAKFISH-----------------------------------CARLDSSMENGGVSSKALE 260 (402)
Q Consensus 216 ~~~~Lvl~PtreLa~Qi~~~~~~l~~-----------------------------------~~~~~v~~~~gg~~~~~~~ 260 (402)
...+||.|+++.-|..+...+..+.. .....+..++|+.....+.
T Consensus 336 ~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~ 415 (997)
T 4a4z_A 336 LLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKE 415 (997)
T ss_dssp CCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHH
Confidence 45799999999988887766643211 1122578889999877665
Q ss_pred HHh----cCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCCCc
Q 015712 261 DVS----NAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 301 (402)
Q Consensus 261 ~~l----~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEad~ 301 (402)
..+ ....+|||||.- -..++++.. ..+|+.....
T Consensus 416 ~v~~~F~~G~~kVLvAT~~------~a~GIDiP~-~~VVi~~~~k 453 (997)
T 4a4z_A 416 LIEILFSKGFIKVLFATET------FAMGLNLPT-RTVIFSSIRK 453 (997)
T ss_dssp HHHHHHHTTCCSEEEECTH------HHHSCCCCC-SEEEESCSEE
T ss_pred HHHHHHHCCCCcEEEEchH------hhCCCCCCC-ceEEEecccc
Confidence 443 346899999962 224778888 6666655443
No 395
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=50.30 E-value=7.3 Score=33.86 Aligned_cols=18 Identities=22% Similarity=0.311 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCCChhhHh
Q 015712 178 GKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~ 195 (402)
+..+++.|+.|||||...
T Consensus 4 ~~~I~l~G~~GsGKsT~a 21 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQA 21 (220)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 567899999999999753
No 396
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=50.15 E-value=7 Score=34.06 Aligned_cols=18 Identities=22% Similarity=0.309 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCCChhhHh
Q 015712 178 GKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~ 195 (402)
+..+++.|+.|||||...
T Consensus 5 ~~~I~l~G~~GsGKsT~~ 22 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQC 22 (222)
T ss_dssp SCCEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 457999999999999854
No 397
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=50.10 E-value=18 Score=30.60 Aligned_cols=15 Identities=27% Similarity=0.437 Sum_probs=12.8
Q ss_pred cEEEEcCCCCChhhH
Q 015712 180 SVVLSSGSGSGRTLA 194 (402)
Q Consensus 180 dvli~a~TGsGKTla 194 (402)
-+++.|++|+|||..
T Consensus 8 ~i~i~G~sGsGKTTl 22 (174)
T 1np6_A 8 LLAFAAWSGTGKTTL 22 (174)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEEeCCCCCHHHH
Confidence 478999999999864
No 398
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=50.07 E-value=7 Score=32.26 Aligned_cols=17 Identities=29% Similarity=0.327 Sum_probs=14.8
Q ss_pred CcEEEEcCCCCChhhHh
Q 015712 179 KSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 179 ~dvli~a~TGsGKTla~ 195 (402)
+++++.|+.|||||...
T Consensus 8 ~~i~l~G~~GsGKSTva 24 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLA 24 (168)
T ss_dssp CEEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 57999999999999864
No 399
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=49.99 E-value=9.5 Score=37.79 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=18.2
Q ss_pred CCcEEEEcCCCCChhhHhHHHHHHHH
Q 015712 178 GKSVVLSSGSGSGRTLAYLLPLVQML 203 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~~lpil~~l 203 (402)
..++++.||+|+|||... -.+...+
T Consensus 201 ~~~~LL~G~pG~GKT~la-~~la~~l 225 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIA-EGLAQQI 225 (468)
T ss_dssp SCEEEEESCTTTTTHHHH-HHHHHHH
T ss_pred CCCeEEECCCCCCHHHHH-HHHHHHH
Confidence 458999999999999754 3333443
No 400
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=49.78 E-value=6.7 Score=32.85 Aligned_cols=16 Identities=13% Similarity=0.268 Sum_probs=13.5
Q ss_pred cEEEEcCCCCChhhHh
Q 015712 180 SVVLSSGSGSGRTLAY 195 (402)
Q Consensus 180 dvli~a~TGsGKTla~ 195 (402)
-+++.|+.|||||...
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999753
No 401
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=49.66 E-value=7.1 Score=39.08 Aligned_cols=18 Identities=28% Similarity=0.530 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCCChhhHh
Q 015712 178 GKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~ 195 (402)
.+.+++.||+|+|||+..
T Consensus 238 ~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CCcEEEECcCCCCHHHHH
Confidence 467999999999999854
No 402
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=49.40 E-value=7.9 Score=34.53 Aligned_cols=33 Identities=18% Similarity=0.360 Sum_probs=26.4
Q ss_pred CCCeeEEEEcCCCccccCCCHHHHHHHHHHhhh
Q 015712 288 CDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 320 (402)
Q Consensus 288 l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~~ 320 (402)
+.+-+++++||--.-+|......+..++..+..
T Consensus 161 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~ 193 (235)
T 3tif_A 161 ANNPPIILADQPTWALDSKTGEKIMQLLKKLNE 193 (235)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 356789999999988888777788888877753
No 403
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=49.34 E-value=7 Score=40.15 Aligned_cols=15 Identities=7% Similarity=0.381 Sum_probs=13.9
Q ss_pred cEEEEcCCCCChhhH
Q 015712 180 SVVLSSGSGSGRTLA 194 (402)
Q Consensus 180 dvli~a~TGsGKTla 194 (402)
++++.||+|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999974
No 404
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=49.21 E-value=11 Score=36.76 Aligned_cols=71 Identities=10% Similarity=0.074 Sum_probs=50.3
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHh----cCCccEEEeCchhhHHHhhcCCCCCCC
Q 015712 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDD 290 (402)
Q Consensus 215 ~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~l~~~l~~~~~~l~~ 290 (402)
.+.++||.|++++.+..+...+ .+..++|+.+...+...+ ....+|||+|- . -..++++.+
T Consensus 348 ~~~k~lvF~~~~~~~~~l~~~l---------~~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~-~-----~~~Gldlp~ 412 (472)
T 2fwr_A 348 RKDKIIIFTRHNELVYRISKVF---------LIPAITHRTSREEREEILEGFRTGRFRAIVSSQ-V-----LDEGIDVPD 412 (472)
T ss_dssp SSSCBCCBCSCHHHHHHHHHHT---------TCCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSS-C-----CCSSSCSCC
T ss_pred CCCcEEEEECCHHHHHHHHHHh---------CcceeeCCCCHHHHHHHHHHHhCCCCCEEEEcC-c-----hhcCccccc
Confidence 4678999999999888776654 245677887765554333 24678999993 2 245789999
Q ss_pred eeEEEEcCCC
Q 015712 291 IRYVVLDEAD 300 (402)
Q Consensus 291 l~~lVlDEad 300 (402)
+.++|+-+..
T Consensus 413 ~~~Vi~~~~~ 422 (472)
T 2fwr_A 413 ANVGVIMSGS 422 (472)
T ss_dssp BSEEEEECCS
T ss_pred CcEEEEECCC
Confidence 9999885433
No 405
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=49.09 E-value=7.8 Score=33.18 Aligned_cols=19 Identities=26% Similarity=0.380 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCCChhhHh
Q 015712 177 NGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~ 195 (402)
.|.-+++.|+.|||||...
T Consensus 9 ~~~~I~l~G~~GsGKST~~ 27 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQS 27 (212)
T ss_dssp CSCEEEEEESTTSSHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHH
Confidence 4667999999999999853
No 406
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=48.91 E-value=8.3 Score=32.30 Aligned_cols=17 Identities=29% Similarity=0.313 Sum_probs=14.4
Q ss_pred CcEEEEcCCCCChhhHh
Q 015712 179 KSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 179 ~dvli~a~TGsGKTla~ 195 (402)
.-+++.|+.|||||...
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIG 19 (184)
T ss_dssp CSEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45899999999999854
No 407
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=48.87 E-value=47 Score=35.45 Aligned_cols=56 Identities=14% Similarity=0.061 Sum_probs=39.5
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhc--CCccEEEeCc
Q 015712 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSN--APIGMLIATP 274 (402)
Q Consensus 215 ~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~--~~~~IlV~TP 274 (402)
.+..+||.|.|++-+..+...+... ++.+.+++|+....+...... ....|+|+|.
T Consensus 440 ~gqpvLVft~sie~se~Ls~~L~~~----gi~~~vLnak~~~rEa~iia~agr~G~VtIATn 497 (853)
T 2fsf_A 440 KGQPVLVGTISIEKSELVSNELTKA----GIKHNVLNAKFHANEAAIVAQAGYPAAVTIATN 497 (853)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHT----TCCCEECCTTCHHHHHHHHHTTTSTTCEEEEES
T ss_pred CCCCEEEEECcHHHHHHHHHHHHHC----CCCEEEecCChhHHHHHHHHhcCCCCeEEEecc
Confidence 3557999999999999988877763 778888888854333322221 1237999996
No 408
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=48.85 E-value=8.7 Score=32.62 Aligned_cols=16 Identities=19% Similarity=0.509 Sum_probs=13.5
Q ss_pred cEEEEcCCCCChhhHh
Q 015712 180 SVVLSSGSGSGRTLAY 195 (402)
Q Consensus 180 dvli~a~TGsGKTla~ 195 (402)
.+.+.||.|+|||..+
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999853
No 409
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=48.83 E-value=6.9 Score=37.41 Aligned_cols=16 Identities=25% Similarity=0.522 Sum_probs=13.7
Q ss_pred cEEEEcCCCCChhhHh
Q 015712 180 SVVLSSGSGSGRTLAY 195 (402)
Q Consensus 180 dvli~a~TGsGKTla~ 195 (402)
=.++.|+||+|||..+
T Consensus 27 l~vi~G~NGaGKT~il 42 (371)
T 3auy_A 27 IVAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3689999999999864
No 410
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=48.74 E-value=7.1 Score=32.91 Aligned_cols=19 Identities=37% Similarity=0.410 Sum_probs=15.7
Q ss_pred cCCcEEEEcCCCCChhhHh
Q 015712 177 NGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~ 195 (402)
.|.-+++.|+.|||||...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIA 30 (186)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3567899999999999754
No 411
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=48.42 E-value=9.7 Score=35.72 Aligned_cols=17 Identities=29% Similarity=0.421 Sum_probs=14.9
Q ss_pred CcEEEEcCCCCChhhHh
Q 015712 179 KSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 179 ~dvli~a~TGsGKTla~ 195 (402)
..+++.||+|+|||...
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 57999999999999764
No 412
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=48.42 E-value=8.2 Score=33.05 Aligned_cols=19 Identities=21% Similarity=0.356 Sum_probs=16.2
Q ss_pred cCCcEEEEcCCCCChhhHh
Q 015712 177 NGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~ 195 (402)
.|.-+++.|+.|||||...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~ 26 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQS 26 (215)
T ss_dssp CCCEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4677999999999999864
No 413
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=48.38 E-value=8.3 Score=32.09 Aligned_cols=16 Identities=25% Similarity=0.341 Sum_probs=14.0
Q ss_pred cEEEEcCCCCChhhHh
Q 015712 180 SVVLSSGSGSGRTLAY 195 (402)
Q Consensus 180 dvli~a~TGsGKTla~ 195 (402)
.+++.++.|||||...
T Consensus 6 ~i~i~G~~GsGKsTla 21 (175)
T 1via_A 6 NIVFIGFMGSGKSTLA 21 (175)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 6899999999999754
No 414
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=48.28 E-value=7.4 Score=32.56 Aligned_cols=16 Identities=31% Similarity=0.513 Sum_probs=13.8
Q ss_pred cEEEEcCCCCChhhHh
Q 015712 180 SVVLSSGSGSGRTLAY 195 (402)
Q Consensus 180 dvli~a~TGsGKTla~ 195 (402)
-+++.|+.|||||...
T Consensus 8 ~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5889999999999853
No 415
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=48.16 E-value=7.4 Score=33.57 Aligned_cols=16 Identities=25% Similarity=0.389 Sum_probs=13.6
Q ss_pred cEEEEcCCCCChhhHh
Q 015712 180 SVVLSSGSGSGRTLAY 195 (402)
Q Consensus 180 dvli~a~TGsGKTla~ 195 (402)
.+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQA 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999754
No 416
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=47.60 E-value=8.7 Score=32.79 Aligned_cols=18 Identities=22% Similarity=0.289 Sum_probs=14.9
Q ss_pred CCcEEEEcCCCCChhhHh
Q 015712 178 GKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~ 195 (402)
+.-+++.|+.|||||...
T Consensus 20 ~~~I~l~G~~GsGKST~a 37 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQA 37 (201)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 346899999999999853
No 417
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=47.49 E-value=7.8 Score=31.93 Aligned_cols=17 Identities=18% Similarity=0.319 Sum_probs=14.3
Q ss_pred CcEEEEcCCCCChhhHh
Q 015712 179 KSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 179 ~dvli~a~TGsGKTla~ 195 (402)
+-+++.|+.|||||...
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVG 19 (173)
T ss_dssp CCEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35899999999999753
No 418
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=47.21 E-value=12 Score=32.21 Aligned_cols=18 Identities=28% Similarity=0.471 Sum_probs=14.9
Q ss_pred CCcEEEEcCCCCChhhHh
Q 015712 178 GKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~ 195 (402)
|.-+.+.+++|+|||..+
T Consensus 1 G~~i~i~G~nG~GKTTll 18 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLI 18 (189)
T ss_dssp CCCEEEESCCSSCHHHHH
T ss_pred CCEEEEECCCCChHHHHH
Confidence 456889999999999864
No 419
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=47.04 E-value=7.5 Score=33.17 Aligned_cols=19 Identities=21% Similarity=0.361 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCCChhhHh
Q 015712 177 NGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~ 195 (402)
.|.-+++.|+.|||||...
T Consensus 3 ~~~~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQA 21 (213)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHH
Confidence 3556899999999999753
No 420
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=46.87 E-value=8 Score=46.76 Aligned_cols=21 Identities=24% Similarity=0.534 Sum_probs=18.0
Q ss_pred HHcCCcEEEEcCCCCChhhHh
Q 015712 175 VLNGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 175 il~g~dvli~a~TGsGKTla~ 195 (402)
+..|+.++++||||+|||+..
T Consensus 1264 l~~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1264 LNSKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HHHTCEEEEECSTTSSHHHHH
T ss_pred HHCCCeEEEECCCCCCHHHHH
Confidence 456899999999999999753
No 421
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=46.85 E-value=9.1 Score=33.17 Aligned_cols=17 Identities=18% Similarity=0.368 Sum_probs=14.4
Q ss_pred CcEEEEcCCCCChhhHh
Q 015712 179 KSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 179 ~dvli~a~TGsGKTla~ 195 (402)
.-+.+.|++|||||...
T Consensus 6 ~~i~i~G~~GsGKSTl~ 22 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLC 22 (227)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46889999999999754
No 422
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=46.56 E-value=11 Score=35.21 Aligned_cols=19 Identities=5% Similarity=0.277 Sum_probs=16.4
Q ss_pred cCCcEEEEcCCCCChhhHh
Q 015712 177 NGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~ 195 (402)
.|.-+.+.||+|+|||...
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl 143 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLC 143 (305)
T ss_dssp TCSEEEEECSSSSSHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH
Confidence 5788999999999999753
No 423
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=46.49 E-value=7.8 Score=32.30 Aligned_cols=19 Identities=16% Similarity=0.219 Sum_probs=11.4
Q ss_pred cCCcEEEEcCCCCChhhHh
Q 015712 177 NGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~ 195 (402)
.+.-+++.|+.|||||...
T Consensus 4 ~~~~I~l~G~~GsGKST~a 22 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTA 22 (183)
T ss_dssp -CCEEEEECCC----CHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3567899999999999864
No 424
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=46.43 E-value=8.2 Score=33.33 Aligned_cols=16 Identities=25% Similarity=0.324 Sum_probs=13.7
Q ss_pred cEEEEcCCCCChhhHh
Q 015712 180 SVVLSSGSGSGRTLAY 195 (402)
Q Consensus 180 dvli~a~TGsGKTla~ 195 (402)
.+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQG 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999854
No 425
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=46.08 E-value=9.1 Score=32.82 Aligned_cols=19 Identities=21% Similarity=0.137 Sum_probs=15.4
Q ss_pred cCCcEEEEcCCCCChhhHh
Q 015712 177 NGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~ 195 (402)
.+.-+.+.|++|||||...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLA 38 (207)
T ss_dssp CCEEEEEEESTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4556889999999999753
No 426
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=46.06 E-value=8.6 Score=32.82 Aligned_cols=16 Identities=19% Similarity=0.380 Sum_probs=13.5
Q ss_pred cEEEEcCCCCChhhHh
Q 015712 180 SVVLSSGSGSGRTLAY 195 (402)
Q Consensus 180 dvli~a~TGsGKTla~ 195 (402)
.+.+.|+.|||||...
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4789999999999753
No 427
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=45.99 E-value=8.5 Score=32.83 Aligned_cols=16 Identities=19% Similarity=0.484 Sum_probs=13.8
Q ss_pred cEEEEcCCCCChhhHh
Q 015712 180 SVVLSSGSGSGRTLAY 195 (402)
Q Consensus 180 dvli~a~TGsGKTla~ 195 (402)
-+++.|+.|||||...
T Consensus 17 ~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5889999999999753
No 428
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=45.75 E-value=8.5 Score=32.58 Aligned_cols=16 Identities=13% Similarity=0.337 Sum_probs=13.5
Q ss_pred cEEEEcCCCCChhhHh
Q 015712 180 SVVLSSGSGSGRTLAY 195 (402)
Q Consensus 180 dvli~a~TGsGKTla~ 195 (402)
.+++.|+.|||||...
T Consensus 2 ~I~i~G~~GsGKsT~~ 17 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTIS 17 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 4789999999999753
No 429
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=45.74 E-value=9.3 Score=37.74 Aligned_cols=18 Identities=22% Similarity=0.377 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCCChhhHh
Q 015712 178 GKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~ 195 (402)
.+++++.||+|+|||+..
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 468999999999999753
No 430
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=45.71 E-value=18 Score=34.50 Aligned_cols=18 Identities=17% Similarity=0.374 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCCChhhHh
Q 015712 178 GKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~ 195 (402)
|.-+.+.|++|+|||...
T Consensus 157 g~vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSL 174 (359)
T ss_dssp SEEEEEECCTTSCHHHHH
T ss_pred CeEEEEEcCCCChHHHHH
Confidence 445889999999999864
No 431
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=45.32 E-value=9.9 Score=33.89 Aligned_cols=18 Identities=22% Similarity=0.407 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCCChhhH
Q 015712 177 NGKSVVLSSGSGSGRTLA 194 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla 194 (402)
.|.-+.+.||+|+|||..
T Consensus 30 ~Ge~~~i~G~nGsGKSTL 47 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSL 47 (237)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 577789999999999974
No 432
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=45.13 E-value=1.9e+02 Score=26.86 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=17.2
Q ss_pred CceEEEEeeccCchhHHHHHHHhh
Q 015712 329 GFQTILVTAAIAEMLGEQLSSLME 352 (402)
Q Consensus 329 ~~q~i~~SATl~~~v~~~~~~~l~ 352 (402)
.+.++.+||.=+..+..+...+..
T Consensus 252 ~~~vi~iSA~~g~Gi~~L~~~I~~ 275 (349)
T 2www_A 252 KPKVIRISARSGEGISEMWDKMKD 275 (349)
T ss_dssp CCEEEECCTTTCTTHHHHHHHHHH
T ss_pred CceEEEEecCCCCCHHHHHHHHHH
Confidence 467888999888777777555444
No 433
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=44.98 E-value=9.9 Score=33.45 Aligned_cols=19 Identities=26% Similarity=0.393 Sum_probs=15.7
Q ss_pred cCCcEEEEcCCCCChhhHh
Q 015712 177 NGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~ 195 (402)
.+..+++.|+.|||||...
T Consensus 15 ~~~~I~l~G~~GsGKsT~a 33 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQA 33 (233)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3467999999999999753
No 434
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=44.68 E-value=9.3 Score=32.68 Aligned_cols=16 Identities=44% Similarity=0.528 Sum_probs=13.4
Q ss_pred cEEEEcCCCCChhhHh
Q 015712 180 SVVLSSGSGSGRTLAY 195 (402)
Q Consensus 180 dvli~a~TGsGKTla~ 195 (402)
-+.+.|+.|||||...
T Consensus 4 ~i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999854
No 435
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=44.64 E-value=19 Score=35.26 Aligned_cols=17 Identities=29% Similarity=0.423 Sum_probs=14.5
Q ss_pred CcEEEEcCCCCChhhHh
Q 015712 179 KSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 179 ~dvli~a~TGsGKTla~ 195 (402)
..++++|++|+|||...
T Consensus 100 ~vI~ivG~~GvGKTTla 116 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTA 116 (432)
T ss_dssp CCEEEECCSSSSTTHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46889999999999764
No 436
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=44.56 E-value=9.2 Score=32.05 Aligned_cols=16 Identities=25% Similarity=0.347 Sum_probs=13.3
Q ss_pred cEEEEcCCCCChhhHh
Q 015712 180 SVVLSSGSGSGRTLAY 195 (402)
Q Consensus 180 dvli~a~TGsGKTla~ 195 (402)
-+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999753
No 437
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=44.49 E-value=9.4 Score=33.06 Aligned_cols=16 Identities=19% Similarity=0.322 Sum_probs=13.5
Q ss_pred cEEEEcCCCCChhhHh
Q 015712 180 SVVLSSGSGSGRTLAY 195 (402)
Q Consensus 180 dvli~a~TGsGKTla~ 195 (402)
-.++.|++|+|||..+
T Consensus 25 ~~~I~G~NgsGKStil 40 (203)
T 3qks_A 25 INLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEEcCCCCCHHHHH
Confidence 4688999999999764
No 438
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=44.39 E-value=10 Score=33.00 Aligned_cols=18 Identities=22% Similarity=0.442 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCCChhhHh
Q 015712 178 GKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~ 195 (402)
+..+++.|+.|||||...
T Consensus 5 ~~~I~l~G~~GsGKsT~a 22 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQC 22 (217)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456899999999999753
No 439
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=44.34 E-value=10 Score=33.98 Aligned_cols=19 Identities=16% Similarity=0.272 Sum_probs=15.8
Q ss_pred cCCcEEEEcCCCCChhhHh
Q 015712 177 NGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~ 195 (402)
.|.-+.+.|++|||||...
T Consensus 26 ~g~~I~I~G~~GsGKSTl~ 44 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLC 44 (252)
T ss_dssp TSCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4567899999999999754
No 440
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=44.10 E-value=9.1 Score=38.16 Aligned_cols=53 Identities=26% Similarity=0.424 Sum_probs=29.2
Q ss_pred ccccccCCCCHHHHHHHHHCC--CCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHh
Q 015712 140 VSSFQELGLKAEMIKAVEKMG--LFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g--~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~ 195 (402)
..+|+++.-.+..++.+.+.- +..|..++... +.-.+.+++.||+|+|||+..
T Consensus 12 ~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g---~~~p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 12 RVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIG---ARMPKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTT---CCCCSEEEEECCTTSSHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcC---CCCCCeEEEECCCCCCHHHHH
Confidence 456888876666655554420 11111111000 001256999999999999864
No 441
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=43.94 E-value=9.5 Score=31.26 Aligned_cols=16 Identities=19% Similarity=0.077 Sum_probs=13.6
Q ss_pred cEEEEcCCCCChhhHh
Q 015712 180 SVVLSSGSGSGRTLAY 195 (402)
Q Consensus 180 dvli~a~TGsGKTla~ 195 (402)
.+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4789999999999753
No 442
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=43.89 E-value=16 Score=34.90 Aligned_cols=21 Identities=10% Similarity=0.319 Sum_probs=16.5
Q ss_pred cCCcEEEEcCCCCChhhHhHH
Q 015712 177 NGKSVVLSSGSGSGRTLAYLL 197 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~~l 197 (402)
.+.++++.|+||+|||.....
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~ 54 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKM 54 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHH
Confidence 456899999999999976543
No 443
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=43.82 E-value=26 Score=31.84 Aligned_cols=52 Identities=4% Similarity=-0.040 Sum_probs=30.3
Q ss_pred cCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHh
Q 015712 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 239 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l 239 (402)
.|..+++.+.+|+||| .+.+-.+..-.. +|-+++|++= .+-..++.+.+..+
T Consensus 20 ~gs~~li~g~p~~~~~-~l~~qfl~~g~~---------~Ge~~~~~~~-~e~~~~l~~~~~~~ 71 (260)
T 3bs4_A 20 HSLILIHEEDASSRGK-DILFYILSRKLK---------SDNLVGMFSI-SYPLQLIIRILSRF 71 (260)
T ss_dssp TCEEEEEECSGGGCHH-HHHHHHHHHHHH---------TTCEEEEEEC-SSCHHHHHHHHHHT
T ss_pred CCcEEEEEeCCCccHH-HHHHHHHHHHHH---------CCCcEEEEEE-eCCHHHHHHHHHHc
Confidence 3456888878888887 554444443333 3667777764 33344555555554
No 444
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=43.41 E-value=11 Score=33.49 Aligned_cols=18 Identities=22% Similarity=0.224 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCCChhhHh
Q 015712 178 GKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~ 195 (402)
+.-+++.|+.|||||...
T Consensus 27 ~~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 467999999999999754
No 445
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=43.24 E-value=10 Score=31.99 Aligned_cols=15 Identities=20% Similarity=0.426 Sum_probs=13.1
Q ss_pred EEEEcCCCCChhhHh
Q 015712 181 VVLSSGSGSGRTLAY 195 (402)
Q Consensus 181 vli~a~TGsGKTla~ 195 (402)
+++.|+.|||||...
T Consensus 3 I~l~G~~GsGKsT~~ 17 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQI 17 (197)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 689999999999864
No 446
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=43.16 E-value=12 Score=32.92 Aligned_cols=32 Identities=16% Similarity=0.121 Sum_probs=27.6
Q ss_pred CCCeeEEEEcCCCccccCCCHHHHHHHHHHhh
Q 015712 288 CDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (402)
Q Consensus 288 l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~ 319 (402)
+.+-+++++||--.-+|......+..++..+.
T Consensus 149 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~ 180 (214)
T 1sgw_A 149 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEIL 180 (214)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHH
T ss_pred HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHH
Confidence 45678999999999999988888888888775
No 447
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=43.00 E-value=19 Score=36.04 Aligned_cols=30 Identities=30% Similarity=0.353 Sum_probs=22.0
Q ss_pred HcCCcEEEEcCCCCChhhHhHHHHHHHHHh
Q 015712 176 LNGKSVVLSSGSGSGRTLAYLLPLVQMLRR 205 (402)
Q Consensus 176 l~g~dvli~a~TGsGKTla~~lpil~~l~~ 205 (402)
..|.-+++.+++|+|||....+-++..+..
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~ 66 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIE 66 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 357789999999999998665544455543
No 448
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=42.94 E-value=10 Score=34.18 Aligned_cols=18 Identities=17% Similarity=0.205 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCCChhhHh
Q 015712 178 GKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~ 195 (402)
+.-++++|+.|||||...
T Consensus 4 ~~lIvl~G~pGSGKSTla 21 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFS 21 (260)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CEEEEEEcCCCCCHHHHH
Confidence 346899999999999753
No 449
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=42.82 E-value=11 Score=33.27 Aligned_cols=18 Identities=22% Similarity=0.549 Sum_probs=15.7
Q ss_pred cCCcEEEEcCCCCChhhH
Q 015712 177 NGKSVVLSSGSGSGRTLA 194 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla 194 (402)
.|.-+.+.||.|+|||..
T Consensus 33 ~Ge~~~i~G~nGsGKSTL 50 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSL 50 (229)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 577789999999999974
No 450
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=42.59 E-value=76 Score=30.95 Aligned_cols=77 Identities=6% Similarity=0.039 Sum_probs=53.5
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHh---cCC--cc-EEEeCchhhHHHhhcCCCCC
Q 015712 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS---NAP--IG-MLIATPSEVLQHIEDRNVSC 288 (402)
Q Consensus 215 ~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l---~~~--~~-IlV~TP~~l~~~l~~~~~~l 288 (402)
.+.++||.+.++..+..+...+... .++.+..++|+.+...+...+ +.+ +. |||+|- . ...++++
T Consensus 340 ~~~k~lvF~~~~~~~~~l~~~l~~~---~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~-~-----~~~Glnl 410 (500)
T 1z63_A 340 EGDKIAIFTQFVDMGKIIRNIIEKE---LNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVK-A-----GGFGINL 410 (500)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHH---HTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECC-C-----C-CCCCC
T ss_pred cCCcEEEEEehHHHHHHHHHHHHHh---hCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecc-c-----ccCCCch
Confidence 4668999999999988887777653 256788899998876655443 223 44 566653 1 2347888
Q ss_pred CCeeEEEEcCCC
Q 015712 289 DDIRYVVLDEAD 300 (402)
Q Consensus 289 ~~l~~lVlDEad 300 (402)
..++++|+=+.+
T Consensus 411 ~~~~~vi~~d~~ 422 (500)
T 1z63_A 411 TSANRVIHFDRW 422 (500)
T ss_dssp TTCSEEEESSCC
T ss_pred hhCCEEEEeCCC
Confidence 999999986654
No 451
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=42.55 E-value=15 Score=31.17 Aligned_cols=40 Identities=18% Similarity=0.283 Sum_probs=28.9
Q ss_pred CeeEEEEcCCCccccCCCHHHHHHHHHHhhhhhcccCCCCceEEEEee
Q 015712 290 DIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTA 337 (402)
Q Consensus 290 ~l~~lVlDEad~~l~~gf~~~i~~il~~l~~~~~~~~~~~~q~i~~SA 337 (402)
.-.++++||.+.-+|......+..++..+. ...|+|++|-
T Consensus 86 ~~~~llLDEp~a~LD~~~~~~~~~~l~~~~--------~~~~~ivith 125 (173)
T 3kta_B 86 PAPFYLFDEIDAHLDDANVKRVADLIKESS--------KESQFIVITL 125 (173)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHT--------TTSEEEEECS
T ss_pred CCCEEEECCCccCCCHHHHHHHHHHHHHhc--------cCCEEEEEEe
Confidence 347999999999888766666666666554 2568877764
No 452
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=42.54 E-value=20 Score=42.13 Aligned_cols=46 Identities=20% Similarity=0.199 Sum_probs=31.4
Q ss_pred cCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHH
Q 015712 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGF 233 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~ 233 (402)
.|.++++.+++|+|||.....-+.+.+. .|-+++|+. ..++..+++
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~k----------~Ge~~~Fit-~ee~~~~L~ 1125 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQR----------EGKTCAFID-AEHALDPIY 1125 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHT----------TTCCEEEEC-TTSCCCHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH----------cCCeEEEEE-ccccHHHHH
Confidence 5688999999999999865544444443 366788875 444445544
No 453
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=42.32 E-value=23 Score=32.86 Aligned_cols=15 Identities=27% Similarity=0.388 Sum_probs=13.0
Q ss_pred EEEEcCCCCChhhHh
Q 015712 181 VVLSSGSGSGRTLAY 195 (402)
Q Consensus 181 vli~a~TGsGKTla~ 195 (402)
+++.|+.|+|||...
T Consensus 7 ~~i~G~~GaGKTTll 21 (318)
T 1nij_A 7 TLLTGFLGAGKTTLL 21 (318)
T ss_dssp EEEEESSSSSCHHHH
T ss_pred EEEEecCCCCHHHHH
Confidence 689999999999753
No 454
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=41.89 E-value=11 Score=32.01 Aligned_cols=16 Identities=19% Similarity=0.366 Sum_probs=13.7
Q ss_pred cEEEEcCCCCChhhHh
Q 015712 180 SVVLSSGSGSGRTLAY 195 (402)
Q Consensus 180 dvli~a~TGsGKTla~ 195 (402)
-+.+.|++|||||...
T Consensus 10 ~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVA 25 (203)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999753
No 455
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=41.75 E-value=12 Score=32.99 Aligned_cols=32 Identities=13% Similarity=0.173 Sum_probs=25.6
Q ss_pred CCCeeEEEEcCCCccccCCCHHHHHHHHHHhh
Q 015712 288 CDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (402)
Q Consensus 288 l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~ 319 (402)
+.+-+++++||--.-+|......+..++..+.
T Consensus 156 ~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~ 187 (224)
T 2pcj_A 156 ANEPILLFADEPTGNLDSANTKRVMDIFLKIN 187 (224)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence 45678999999998888777777777777764
No 456
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=41.69 E-value=11 Score=39.73 Aligned_cols=18 Identities=28% Similarity=0.327 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCCChhhHh
Q 015712 178 GKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~ 195 (402)
..++|+.||+|+|||...
T Consensus 201 ~~~vLL~G~pGtGKT~la 218 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIA 218 (758)
T ss_dssp SCEEEEESCTTTTTHHHH
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 458999999999999864
No 457
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=41.56 E-value=12 Score=34.34 Aligned_cols=32 Identities=25% Similarity=0.256 Sum_probs=25.4
Q ss_pred CCCeeEEEEcCCCccccCCCHHHHHHHHHHhh
Q 015712 288 CDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (402)
Q Consensus 288 l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~ 319 (402)
+.+-++|++||--.-+|......+..++..+.
T Consensus 159 ~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~ 190 (275)
T 3gfo_A 159 VMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQ 190 (275)
T ss_dssp TTCCSEEEEECTTTTCCHHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHH
Confidence 35678999999988888777777777777775
No 458
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=41.15 E-value=11 Score=32.23 Aligned_cols=18 Identities=22% Similarity=0.080 Sum_probs=14.6
Q ss_pred CCcEEEEcCCCCChhhHh
Q 015712 178 GKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~ 195 (402)
|.-+.+.|++|||||...
T Consensus 22 ~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp SEEEEEEECTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345889999999999754
No 459
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=41.06 E-value=11 Score=32.54 Aligned_cols=16 Identities=13% Similarity=0.241 Sum_probs=13.6
Q ss_pred cEEEEcCCCCChhhHh
Q 015712 180 SVVLSSGSGSGRTLAY 195 (402)
Q Consensus 180 dvli~a~TGsGKTla~ 195 (402)
.+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQA 17 (214)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999753
No 460
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=41.03 E-value=14 Score=33.12 Aligned_cols=32 Identities=16% Similarity=0.263 Sum_probs=24.9
Q ss_pred CCCeeEEEEcCCCccccCCCHHHHHHHHHHhh
Q 015712 288 CDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (402)
Q Consensus 288 l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~ 319 (402)
+.+-+++++||.-.-+|......+..++..+.
T Consensus 161 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~ 192 (247)
T 2ff7_A 161 VNNPKILIFDEATSALDYESEHVIMRNMHKIC 192 (247)
T ss_dssp TTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc
Confidence 34668999999998888777777777777663
No 461
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=40.99 E-value=13 Score=33.62 Aligned_cols=31 Identities=23% Similarity=0.295 Sum_probs=25.3
Q ss_pred CCeeEEEEcCCCccccCCCHHHHHHHHHHhh
Q 015712 289 DDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (402)
Q Consensus 289 ~~l~~lVlDEad~~l~~gf~~~i~~il~~l~ 319 (402)
.+-+++++||--.-+|......+..++..+.
T Consensus 170 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~ 200 (257)
T 1g6h_A 170 TNPKMIVMDEPIAGVAPGLAHDIFNHVLELK 200 (257)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHH
Confidence 4678999999998888777777888887764
No 462
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=40.93 E-value=14 Score=33.40 Aligned_cols=30 Identities=27% Similarity=0.351 Sum_probs=23.1
Q ss_pred CeeEEEEcCCCccccCCCHHHHHHHHHHhh
Q 015712 290 DIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (402)
Q Consensus 290 ~l~~lVlDEad~~l~~gf~~~i~~il~~l~ 319 (402)
+-+++++||.-.-+|......+..++..+.
T Consensus 173 ~p~lllLDEPts~LD~~~~~~i~~~l~~l~ 202 (260)
T 2ghi_A 173 DPKIVIFDEATSSLDSKTEYLFQKAVEDLR 202 (260)
T ss_dssp CCSEEEEECCCCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHhc
Confidence 558999999998888766777777776663
No 463
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=40.77 E-value=6.7 Score=41.83 Aligned_cols=53 Identities=17% Similarity=0.323 Sum_probs=33.2
Q ss_pred ccccccCCCCHHHHHHHHHCCC---CCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHh
Q 015712 140 VSSFQELGLKAEMIKAVEKMGL---FVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g~---~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~ 195 (402)
..+|++++.-+.+.+.|.+.=. ..|.-++... +...+.+|+.||.|+|||+..
T Consensus 473 ~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g---~~~~~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 473 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG---MTPSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC---CCCCSCCEEESSTTSSHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCceEEEecCCCCCchHHH
Confidence 4578999888888888877521 1111111100 112356999999999999753
No 464
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=40.66 E-value=39 Score=36.95 Aligned_cols=77 Identities=12% Similarity=0.083 Sum_probs=51.4
Q ss_pred CCeEEEEcCchHHHHHHHHHHHHhhcc-----------------------------------CCcceeeccCCCChHHHH
Q 015712 216 HPRAIVLCTTEESADQGFHMAKFISHC-----------------------------------ARLDSSMENGGVSSKALE 260 (402)
Q Consensus 216 ~~~~Lvl~PtreLa~Qi~~~~~~l~~~-----------------------------------~~~~v~~~~gg~~~~~~~ 260 (402)
..++||.|+++.-|..++..+..+... ....+..++|+.....+.
T Consensus 343 ~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~ 422 (1010)
T 2xgj_A 343 YNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKE 422 (1010)
T ss_dssp CCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHH
Confidence 447999999999998887766442110 012377889999877665
Q ss_pred HHh----cCCccEEEeCchhhHHHhhcCCCCCCCeeEEEEcCC
Q 015712 261 DVS----NAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 299 (402)
Q Consensus 261 ~~l----~~~~~IlV~TP~~l~~~l~~~~~~l~~l~~lVlDEa 299 (402)
..+ ....+|||||.- -..++++..+.+ ||+..
T Consensus 423 ~ve~~F~~G~ikVLVAT~~------la~GIDiP~~~v-VI~~~ 458 (1010)
T 2xgj_A 423 VIEILFQEGFLKVLFATET------FSIGLNMPAKTV-VFTSV 458 (1010)
T ss_dssp HHHHHHHTTCCSEEEEEGG------GGGSTTCCBSEE-EESCS
T ss_pred HHHHHHhcCCCcEEEEehH------hhccCCCCCceE-EEeCC
Confidence 433 356889999952 234778888776 55543
No 465
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=40.62 E-value=13 Score=33.16 Aligned_cols=32 Identities=9% Similarity=0.201 Sum_probs=25.8
Q ss_pred CCCeeEEEEcCCCccccCCCHHHHHHHHHHhh
Q 015712 288 CDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (402)
Q Consensus 288 l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~ 319 (402)
+.+-+++++||--.-+|......+..++..+.
T Consensus 155 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~ 186 (240)
T 1ji0_A 155 MSRPKLLMMDEPSLGLAPILVSEVFEVIQKIN 186 (240)
T ss_dssp TTCCSEEEEECTTTTCCHHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 35678999999998888877777888777764
No 466
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=40.53 E-value=83 Score=33.85 Aligned_cols=55 Identities=13% Similarity=0.036 Sum_probs=38.8
Q ss_pred CCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhc--CCccEEEeCc
Q 015712 216 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSN--APIGMLIATP 274 (402)
Q Consensus 216 ~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~--~~~~IlV~TP 274 (402)
+..+||.|.|++-+..+...+... ++.+.+++|+....+...... ....|+|+|.
T Consensus 460 gqpvLVft~Sie~sE~Ls~~L~~~----Gi~~~vLnak~~~rEa~iia~agr~G~VtIATn 516 (922)
T 1nkt_A 460 GQPVLIGTTSVERSEYLSRQFTKR----RIPHNVLNAKYHEQEATIIAVAGRRGGVTVATN 516 (922)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHHT----TCCCEEECSSCHHHHHHHHHTTTSTTCEEEEET
T ss_pred CCcEEEEECCHHHHHHHHHHHHHC----CCCEEEecCChhHHHHHHHHhcCCCCeEEEecc
Confidence 556999999999999888877764 788888988864333222211 1237999995
No 467
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=40.45 E-value=8.1 Score=34.62 Aligned_cols=17 Identities=29% Similarity=0.493 Sum_probs=14.3
Q ss_pred CcEEEEcCCCCChhhHh
Q 015712 179 KSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 179 ~dvli~a~TGsGKTla~ 195 (402)
.-+++.|++|||||...
T Consensus 33 ~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIH 49 (253)
T ss_dssp EEEEEESCGGGTTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45899999999999753
No 468
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=40.28 E-value=11 Score=35.35 Aligned_cols=15 Identities=20% Similarity=0.383 Sum_probs=0.0
Q ss_pred EEEEcCCCCChhhHh
Q 015712 181 VVLSSGSGSGRTLAY 195 (402)
Q Consensus 181 vli~a~TGsGKTla~ 195 (402)
.+++||+|+|||..+
T Consensus 26 ~~i~G~NGsGKS~ll 40 (339)
T 3qkt_A 26 NLIIGQNGSGKSSLL 40 (339)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
No 469
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=39.92 E-value=13 Score=33.78 Aligned_cols=30 Identities=23% Similarity=0.352 Sum_probs=24.5
Q ss_pred CeeEEEEcCCCccccCCCHHHHHHHHHHhh
Q 015712 290 DIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (402)
Q Consensus 290 ~l~~lVlDEad~~l~~gf~~~i~~il~~l~ 319 (402)
+-++|++||--.-+|......+..++..+.
T Consensus 165 ~p~lLllDEPts~LD~~~~~~i~~~l~~l~ 194 (266)
T 4g1u_C 165 TPRWLFLDEPTSALDLYHQQHTLRLLRQLT 194 (266)
T ss_dssp CCEEEEECCCCSSCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHH
Confidence 678999999988888777777777777775
No 470
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=39.82 E-value=13 Score=33.61 Aligned_cols=31 Identities=19% Similarity=0.329 Sum_probs=25.1
Q ss_pred CCeeEEEEcCCCccccCCCHHHHHHHHHHhh
Q 015712 289 DDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (402)
Q Consensus 289 ~~l~~lVlDEad~~l~~gf~~~i~~il~~l~ 319 (402)
.+-+++++||--.-+|......+..++..+.
T Consensus 170 ~~p~lllLDEPts~LD~~~~~~~~~~l~~l~ 200 (262)
T 1b0u_A 170 MEPDVLLFDEPTSALDPELVGEVLRIMQQLA 200 (262)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 4668999999998888777777777777764
No 471
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=39.72 E-value=72 Score=30.12 Aligned_cols=16 Identities=19% Similarity=0.370 Sum_probs=10.8
Q ss_pred EEEE-cCCCCChhhHhH
Q 015712 181 VVLS-SGSGSGRTLAYL 196 (402)
Q Consensus 181 vli~-a~TGsGKTla~~ 196 (402)
+.+. +.-|.|||...+
T Consensus 146 Iav~s~KGGvGKTT~a~ 162 (373)
T 3fkq_A 146 VIFTSPCGGVGTSTVAA 162 (373)
T ss_dssp EEEECSSTTSSHHHHHH
T ss_pred EEEECCCCCChHHHHHH
Confidence 4444 468899998643
No 472
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=39.43 E-value=12 Score=32.23 Aligned_cols=17 Identities=35% Similarity=0.520 Sum_probs=14.2
Q ss_pred CcEEEEcCCCCChhhHh
Q 015712 179 KSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 179 ~dvli~a~TGsGKTla~ 195 (402)
.-+.+.|+.|||||...
T Consensus 5 ~~I~i~G~~GSGKST~~ 21 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVA 21 (218)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45889999999999853
No 473
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=39.21 E-value=20 Score=30.75 Aligned_cols=29 Identities=21% Similarity=0.237 Sum_probs=18.6
Q ss_pred CCCeeEEEEcCCCccc--cCCCHHHHHHHHH
Q 015712 288 CDDIRYVVLDEADTLF--DRGFGPEISKILN 316 (402)
Q Consensus 288 l~~l~~lVlDEad~~l--~~gf~~~i~~il~ 316 (402)
+.+.+++|+||+..|- +..|...+..++.
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~ 133 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLS 133 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHh
Confidence 4567899999998773 3335444444443
No 474
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=39.11 E-value=26 Score=40.46 Aligned_cols=40 Identities=18% Similarity=0.156 Sum_probs=27.6
Q ss_pred cCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCch
Q 015712 177 NGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTE 226 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~Ptr 226 (402)
.|..+++.+++|+|||...+--++..+. .+..++|+.-..
T Consensus 33 ~G~i~lI~G~pGsGKT~LAlqla~~~~~----------~G~~vlYI~te~ 72 (1706)
T 3cmw_A 33 MGRIVEIYGPESSGKTTLTLQVIAAAQR----------EGKTCAFIDAEH 72 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHH----------TTCCEEEECTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh----------CCCceEEEEecC
Confidence 3678999999999999765444444443 255788886543
No 475
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=39.02 E-value=14 Score=33.58 Aligned_cols=30 Identities=23% Similarity=0.300 Sum_probs=23.3
Q ss_pred CeeEEEEcCCCccccCCCHHHHHHHHHHhh
Q 015712 290 DIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (402)
Q Consensus 290 ~l~~lVlDEad~~l~~gf~~~i~~il~~l~ 319 (402)
+-++|++||--.-+|......+..++..+.
T Consensus 182 ~p~lLlLDEPts~LD~~~~~~l~~~l~~l~ 211 (267)
T 2zu0_C 182 EPELCILDESDSGLDIDALKVVADGVNSLR 211 (267)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHTTC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence 457999999998888777777777776663
No 476
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=38.93 E-value=11 Score=40.18 Aligned_cols=19 Identities=26% Similarity=0.487 Sum_probs=16.2
Q ss_pred cCCcEEEEcCCCCChhhHh
Q 015712 177 NGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~ 195 (402)
.++.+++.||+|+|||+..
T Consensus 237 ~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCCEEEECSCTTSSHHHHH
T ss_pred CCCeEEEECcCCCCHHHHH
Confidence 4678999999999999753
No 477
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=38.91 E-value=12 Score=45.91 Aligned_cols=20 Identities=25% Similarity=0.576 Sum_probs=17.3
Q ss_pred HHcCCcEEEEcCCCCChhhH
Q 015712 175 VLNGKSVVLSSGSGSGRTLA 194 (402)
Q Consensus 175 il~g~dvli~a~TGsGKTla 194 (402)
+..|+.++++||||+|||..
T Consensus 1301 l~~~~pvLL~GptGtGKT~l 1320 (3245)
T 3vkg_A 1301 LSEHRPLILCGPPGSGKTMT 1320 (3245)
T ss_dssp HHTTCCCEEESSTTSSHHHH
T ss_pred HHCCCcEEEECCCCCCHHHH
Confidence 45788999999999999953
No 478
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=38.75 E-value=13 Score=33.09 Aligned_cols=30 Identities=27% Similarity=0.375 Sum_probs=24.7
Q ss_pred CeeEEEEcCCCccccCCCHHHHHHHHHHhh
Q 015712 290 DIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (402)
Q Consensus 290 ~l~~lVlDEad~~l~~gf~~~i~~il~~l~ 319 (402)
+-+++++||.-.-+|......+..++..+.
T Consensus 157 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~ 186 (243)
T 1mv5_A 157 NPKILMLDEATASLDSESESMVQKALDSLM 186 (243)
T ss_dssp CCSEEEEECCSCSSCSSSCCHHHHHHHHHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHhc
Confidence 457999999999999887778888877664
No 479
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=38.74 E-value=14 Score=33.47 Aligned_cols=32 Identities=22% Similarity=0.290 Sum_probs=26.1
Q ss_pred CCCeeEEEEcCCCccccCCCHHHHHHHHHHhh
Q 015712 288 CDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (402)
Q Consensus 288 l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~ 319 (402)
+.+-+++++||--.-+|......+..++..+.
T Consensus 154 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~ 185 (266)
T 2yz2_A 154 VHEPDILILDEPLVGLDREGKTDLLRIVEKWK 185 (266)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEcCccccCCHHHHHHHHHHHHHHH
Confidence 45678999999999888877778888887764
No 480
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=38.62 E-value=13 Score=32.57 Aligned_cols=16 Identities=19% Similarity=0.356 Sum_probs=13.5
Q ss_pred cEEEEcCCCCChhhHh
Q 015712 180 SVVLSSGSGSGRTLAY 195 (402)
Q Consensus 180 dvli~a~TGsGKTla~ 195 (402)
.+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQG 17 (223)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999853
No 481
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=38.59 E-value=2.8e+02 Score=26.85 Aligned_cols=34 Identities=9% Similarity=0.189 Sum_probs=25.3
Q ss_pred CCcHHHHHHHHHHH---cCCcEEEEcCCCCChhhHhH
Q 015712 163 VPSEIQCVGIPAVL---NGKSVVLSSGSGSGRTLAYL 196 (402)
Q Consensus 163 ~pt~iQ~~~i~~il---~g~dvli~a~TGsGKTla~~ 196 (402)
.|...-..+|..++ .|+-+.+.|++|+|||....
T Consensus 156 ~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~ 192 (422)
T 3ice_A 156 STEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQ 192 (422)
T ss_dssp CTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHH
T ss_pred CcccccceeeeeeeeecCCcEEEEecCCCCChhHHHH
Confidence 34455556666654 68999999999999998653
No 482
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=38.59 E-value=14 Score=33.17 Aligned_cols=27 Identities=30% Similarity=0.413 Sum_probs=22.6
Q ss_pred EEEEcCCCccccCCCHHHHHHHHHHhh
Q 015712 293 YVVLDEADTLFDRGFGPEISKILNPLK 319 (402)
Q Consensus 293 ~lVlDEad~~l~~gf~~~i~~il~~l~ 319 (402)
++++||--.-+|......+..++..+.
T Consensus 154 lllLDEPts~LD~~~~~~l~~~l~~l~ 180 (249)
T 2qi9_C 154 LLLLDEPMNSLDVAQQSALDKILSALS 180 (249)
T ss_dssp EEEESSTTTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHH
Confidence 999999998888777777888877764
No 483
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=38.55 E-value=8.9 Score=32.43 Aligned_cols=16 Identities=25% Similarity=0.277 Sum_probs=13.1
Q ss_pred cEEEEcCCCCChhhHh
Q 015712 180 SVVLSSGSGSGRTLAY 195 (402)
Q Consensus 180 dvli~a~TGsGKTla~ 195 (402)
-+.+++++|||||...
T Consensus 4 ~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678899999999753
No 484
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=38.45 E-value=36 Score=31.76 Aligned_cols=23 Identities=30% Similarity=0.641 Sum_probs=15.0
Q ss_pred EEEEcC---CCCChhhHhHHHHHHHHH
Q 015712 181 VVLSSG---SGSGRTLAYLLPLVQMLR 204 (402)
Q Consensus 181 vli~a~---TGsGKTla~~lpil~~l~ 204 (402)
+|++|. -|||||= +.+.++..+.
T Consensus 38 VI~VGNitvGGTGKTP-~vi~L~~~L~ 63 (315)
T 4ehx_A 38 VISVGNLSVGGSGKTS-FVMYLADLLK 63 (315)
T ss_dssp EEEEEESBSSCCSHHH-HHHHHHHHTT
T ss_pred EEEECCEEeCCCChHH-HHHHHHHHHh
Confidence 566664 7899994 3556666553
No 485
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=38.40 E-value=15 Score=33.30 Aligned_cols=32 Identities=28% Similarity=0.287 Sum_probs=25.9
Q ss_pred CCCeeEEEEcCCCccccCCCHHHHHHHHHHhh
Q 015712 288 CDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (402)
Q Consensus 288 l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~ 319 (402)
+.+-+++++||--.-+|......+..++..+.
T Consensus 162 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~ 193 (256)
T 1vpl_A 162 MVNPRLAILDEPTSGLDVLNAREVRKILKQAS 193 (256)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEeCCccccCHHHHHHHHHHHHHHH
Confidence 45678999999998888777777888877764
No 486
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=38.40 E-value=2.4e+02 Score=26.00 Aligned_cols=105 Identities=11% Similarity=0.089 Sum_probs=51.1
Q ss_pred HHcCCcEEEEcCCCCChhhHhHHHHHHHHHhhcccCCCCCCCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCC
Q 015712 175 VLNGKSVVLSSGSGSGRTLAYLLPLVQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGV 254 (402)
Q Consensus 175 il~g~dvli~a~TGsGKTla~~lpil~~l~~~~~~~~~~~~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~ 254 (402)
.+...+.++. ++| |.+..+.+ ..+.. .+..+|+..|+..-... .+..+....+..+..+.. .
T Consensus 64 ~~~~~~~i~~---~sG-t~a~~~~~-~~~~~---------~g~~vl~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~-~ 125 (386)
T 1cs1_A 64 LEGGAGAVLT---NTG-MSAIHLVT-TVFLK---------PGDLLVAPHDCYGGSYR---LFDSLAKRGCYRVLFVDQ-G 125 (386)
T ss_dssp HHTCSEEEEE---SSH-HHHHHHHH-HHHCC---------TTCEEEEETTCCHHHHH---HHHHHHTTTSCEEEEECT-T
T ss_pred HhCCCcEEEe---CCH-HHHHHHHH-HHHhC---------CCCEEEEecCCcHhHHH---HHHHHHHhcCCEEEEeCC-C
Confidence 3333455554 567 65543333 33322 35577777777653322 222333334555544332 2
Q ss_pred ChHHHHHHhcCCccEE-EeCch----------hhHHHhhcCCCCCCCeeEEEEcCCCccc
Q 015712 255 SSKALEDVSNAPIGML-IATPS----------EVLQHIEDRNVSCDDIRYVVLDEADTLF 303 (402)
Q Consensus 255 ~~~~~~~~l~~~~~Il-V~TP~----------~l~~~l~~~~~~l~~l~~lVlDEad~~l 303 (402)
+.......+..++.+| +++|. .+.++..+.. -+||+||+|...
T Consensus 126 d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~------~~li~De~~~~~ 179 (386)
T 1cs1_A 126 DEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREVG------AVSVVDNTFLSP 179 (386)
T ss_dssp CHHHHHHHHHTCCSEEEEECSCTTTCCCCCHHHHHHHHHHTT------CEEEEECTTTCT
T ss_pred CHHHHHHhhccCCcEEEEeCCCCCCCcccCHHHHHHHHHHcC------CEEEEECCCccc
Confidence 4444444554444444 44442 2233333321 279999999654
No 487
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=38.07 E-value=13 Score=30.83 Aligned_cols=19 Identities=26% Similarity=0.310 Sum_probs=15.5
Q ss_pred HcCCcEEEEcCCCCChhhH
Q 015712 176 LNGKSVVLSSGSGSGRTLA 194 (402)
Q Consensus 176 l~g~dvli~a~TGsGKTla 194 (402)
..|.-+.+.||.|+|||..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTL 49 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTL 49 (158)
T ss_dssp SSCEEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3566688999999999974
No 488
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=38.03 E-value=15 Score=33.18 Aligned_cols=31 Identities=19% Similarity=0.304 Sum_probs=25.4
Q ss_pred CCeeEEEEcCCCccccCCCHHHHHHHHHHhh
Q 015712 289 DDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (402)
Q Consensus 289 ~~l~~lVlDEad~~l~~gf~~~i~~il~~l~ 319 (402)
.+-+++++||--.-+|......+..++..+.
T Consensus 145 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~ 175 (253)
T 2nq2_C 145 SECKLILLDEPTSALDLANQDIVLSLLIDLA 175 (253)
T ss_dssp TTCSEEEESSSSTTSCHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 4668999999998888877778888887775
No 489
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=37.60 E-value=11 Score=35.08 Aligned_cols=31 Identities=23% Similarity=0.238 Sum_probs=23.4
Q ss_pred CCeeEEEEcCCCccccCCCHHHHHHHHHHhh
Q 015712 289 DDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (402)
Q Consensus 289 ~~l~~lVlDEad~~l~~gf~~~i~~il~~l~ 319 (402)
.+-++||+||.=.-+|......+..++..+.
T Consensus 207 ~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~ 237 (306)
T 3nh6_A 207 KAPGIILLDEATSALDTSNERAIQASLAKVC 237 (306)
T ss_dssp HCCSEEEEECCSSCCCHHHHHHHHHHHHHHH
T ss_pred hCCCEEEEECCcccCCHHHHHHHHHHHHHHc
Confidence 3568999999988887766667777776654
No 490
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=37.53 E-value=17 Score=32.54 Aligned_cols=30 Identities=27% Similarity=0.389 Sum_probs=23.7
Q ss_pred CeeEEEEcCCCccccCCCHHHHHHHHHHhh
Q 015712 290 DIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (402)
Q Consensus 290 ~l~~lVlDEad~~l~~gf~~~i~~il~~l~ 319 (402)
+-++|++||.-.-+|......+..++..+.
T Consensus 161 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~ 190 (250)
T 2d2e_A 161 EPTYAVLDETDSGLDIDALKVVARGVNAMR 190 (250)
T ss_dssp CCSEEEEECGGGTTCHHHHHHHHHHHHHHC
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence 457999999998888777777777777663
No 491
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=37.47 E-value=87 Score=30.07 Aligned_cols=10 Identities=20% Similarity=0.135 Sum_probs=8.1
Q ss_pred EEEEcCCCcc
Q 015712 293 YVVLDEADTL 302 (402)
Q Consensus 293 ~lVlDEad~~ 302 (402)
++|+||+|..
T Consensus 197 ~livD~a~~~ 206 (409)
T 3jzl_A 197 IVFVDNCYGE 206 (409)
T ss_dssp EEEEECTTCT
T ss_pred EEEEeCCccc
Confidence 7889999853
No 492
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=37.26 E-value=14 Score=32.93 Aligned_cols=19 Identities=16% Similarity=0.260 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCCChhhHh
Q 015712 177 NGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 177 ~g~dvli~a~TGsGKTla~ 195 (402)
.+..+++.|+.|||||...
T Consensus 28 ~~~~I~l~G~~GsGKsT~a 46 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQS 46 (243)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3456999999999999753
No 493
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=37.09 E-value=13 Score=37.16 Aligned_cols=53 Identities=23% Similarity=0.288 Sum_probs=28.5
Q ss_pred ccccccCCCCHHHHHHHHHCC--CCCCcHHHHHHHHHHHcCCcEEEEcCCCCChhhHh
Q 015712 140 VSSFQELGLKAEMIKAVEKMG--LFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g--~~~pt~iQ~~~i~~il~g~dvli~a~TGsGKTla~ 195 (402)
..+|+++.-.+.....+.+.- +..+..++... +.-.+.+++.||+|+|||+..
T Consensus 27 ~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg---~~ip~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 27 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMG---ARIPKGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTS---CCCCSEEEEECSSSSSHHHHH
T ss_pred CCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhcc---CCCCceEEEECCCCCCHHHHH
Confidence 456888776666655554431 11110000000 001235999999999999754
No 494
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=37.04 E-value=16 Score=33.24 Aligned_cols=32 Identities=16% Similarity=0.318 Sum_probs=25.9
Q ss_pred CCCeeEEEEcCCCccccCCCHHHHHHHHHHhh
Q 015712 288 CDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (402)
Q Consensus 288 l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~ 319 (402)
+.+-++|++||--.-+|......+..++..+.
T Consensus 175 ~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~ 206 (263)
T 2olj_A 175 AMEPKIMLFDEPTSALDPEMVGEVLSVMKQLA 206 (263)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred HCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 45678999999998888877777888887774
No 495
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=36.90 E-value=2.8e+02 Score=29.09 Aligned_cols=88 Identities=11% Similarity=0.060 Sum_probs=59.6
Q ss_pred CCCeEEEEcCchHHHHHHHHHHHHhhccCCcceeeccCCCChHHHHHHhcC----Ccc---EEEeCchhhHHHhhcCCCC
Q 015712 215 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNA----PIG---MLIATPSEVLQHIEDRNVS 287 (402)
Q Consensus 215 ~~~~~Lvl~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~----~~~---IlV~TP~~l~~~l~~~~~~ 287 (402)
.+.++||.+..+..+..+...+... ++.+..+.|+.+...+...+.. ... +|++| .. ...+++
T Consensus 571 ~g~kvLIFsq~~~~ld~L~~~L~~~----g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt-~a-----gg~GlN 640 (800)
T 3mwy_W 571 DGHRVLIFSQMVRMLDILGDYLSIK----GINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLST-RA-----GGLGIN 640 (800)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHH----TCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEH-HH-----HTTTCC
T ss_pred CCCeEEEEechHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEec-cc-----ccCCCC
Confidence 4679999999999888777777653 7788899999988877665532 222 44544 22 234788
Q ss_pred CCCeeEEEEcCCCccccCCCHHHHHHHHH
Q 015712 288 CDDIRYVVLDEADTLFDRGFGPEISKILN 316 (402)
Q Consensus 288 l~~l~~lVlDEad~~l~~gf~~~i~~il~ 316 (402)
+..+.+||+=+.+ +.....++.+=+
T Consensus 641 L~~a~~VI~~D~~----wnp~~~~Qa~gR 665 (800)
T 3mwy_W 641 LMTADTVVIFDSD----WNPQADLQAMAR 665 (800)
T ss_dssp CTTCCEEEESSCC----SCSHHHHHHHTT
T ss_pred ccccceEEEecCC----CChhhHHHHHHH
Confidence 8999999885544 554554444433
No 496
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=36.84 E-value=21 Score=37.42 Aligned_cols=16 Identities=25% Similarity=0.424 Sum_probs=14.2
Q ss_pred cEEEEcCCCCChhhHh
Q 015712 180 SVVLSSGSGSGRTLAY 195 (402)
Q Consensus 180 dvli~a~TGsGKTla~ 195 (402)
++++.||+|+|||...
T Consensus 490 ~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVT 505 (758)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 6999999999999754
No 497
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=36.80 E-value=14 Score=38.73 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCCChhhHh
Q 015712 178 GKSVVLSSGSGSGRTLAY 195 (402)
Q Consensus 178 g~dvli~a~TGsGKTla~ 195 (402)
+.++++.|++|+|||...
T Consensus 207 ~~~vlL~G~~GtGKT~la 224 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIA 224 (758)
T ss_dssp SCEEEEECCTTSSHHHHH
T ss_pred CCCeEEEcCCCCCHHHHH
Confidence 568999999999999754
No 498
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=36.79 E-value=16 Score=33.51 Aligned_cols=31 Identities=23% Similarity=0.250 Sum_probs=24.2
Q ss_pred CCeeEEEEcCCCccccCCCHHHHHHHHHHhh
Q 015712 289 DDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (402)
Q Consensus 289 ~~l~~lVlDEad~~l~~gf~~~i~~il~~l~ 319 (402)
.+-++|++||--.-+|......+..++..+.
T Consensus 178 ~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~ 208 (279)
T 2ihy_A 178 GQPQVLILDEPAAGLDFIARESLLSILDSLS 208 (279)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCccccCHHHHHHHHHHHHHHH
Confidence 4668999999988888776777777777664
No 499
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=36.73 E-value=18 Score=32.94 Aligned_cols=32 Identities=22% Similarity=0.348 Sum_probs=25.4
Q ss_pred CCCeeEEEEcCCCccccCCCHHHHHHHHHHhh
Q 015712 288 CDDIRYVVLDEADTLFDRGFGPEISKILNPLK 319 (402)
Q Consensus 288 l~~l~~lVlDEad~~l~~gf~~~i~~il~~l~ 319 (402)
+.+-++|++||.-.-+|......+..++..+.
T Consensus 172 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~ 203 (271)
T 2ixe_A 172 IRKPRLLILDNATSALDAGNQLRVQRLLYESP 203 (271)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHCT
T ss_pred hcCCCEEEEECCccCCCHHHHHHHHHHHHHHH
Confidence 45678999999998888777777777777664
No 500
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=36.69 E-value=15 Score=31.68 Aligned_cols=16 Identities=13% Similarity=0.351 Sum_probs=13.4
Q ss_pred cEEEEcCCCCChhhHh
Q 015712 180 SVVLSSGSGSGRTLAY 195 (402)
Q Consensus 180 dvli~a~TGsGKTla~ 195 (402)
-+.+.|+.|||||.+.
T Consensus 14 iIgltG~~GSGKSTva 29 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVC 29 (192)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999764
Done!