BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015713
(402 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YP2|A Chain A, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase
pdb|1YP2|B Chain B, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase
pdb|1YP2|C Chain C, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase
pdb|1YP2|D Chain D, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase
pdb|1YP3|A Chain A, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase In Complex With Atp
pdb|1YP3|B Chain B, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase In Complex With Atp
pdb|1YP3|C Chain C, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase In Complex With Atp
pdb|1YP3|D Chain D, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase In Complex With Atp
pdb|1YP4|A Chain A, Crystal Structure Of Potato Tuber Adp-glucose
Pyrophosphorylase In Complex With Adp-glucose
pdb|1YP4|B Chain B, Crystal Structure Of Potato Tuber Adp-glucose
Pyrophosphorylase In Complex With Adp-glucose
pdb|1YP4|C Chain C, Crystal Structure Of Potato Tuber Adp-glucose
Pyrophosphorylase In Complex With Adp-glucose
pdb|1YP4|D Chain D, Crystal Structure Of Potato Tuber Adp-glucose
Pyrophosphorylase In Complex With Adp-glucose
Length = 451
Score = 328 bits (841), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 155/262 (59%), Positives = 202/262 (77%), Gaps = 6/262 (2%)
Query: 104 TRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNL 163
TRL+PLT +RAKPAVP+G NYRLIDIP+SNC+NS +KI+++TQFNS SLNRHL+R+Y
Sbjct: 32 TRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYAS 91
Query: 164 GNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH 223
G +GFVEVLAA Q+P WFQGTADAVRQ++W+FE+ V LIL+GDH
Sbjct: 92 NMGGYKNEGFVEVLAAQQSP--ENPDWFQGTADAVRQYLWLFEE---HTVLEYLILAGDH 146
Query: 224 LYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKG 283
LYRMDY +F+Q H +T ADITV+ +PMD+ RA+ +GLMKID G+II+FAEKP+G L+
Sbjct: 147 LYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFAEKPQGEQLQA 206
Query: 284 MQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIP-ASVKD 342
M+ DTT+LGL A + P+IASMG+Y+ DV+LNLLR +P +NDFGSE+IP A+
Sbjct: 207 MKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSLG 266
Query: 343 HNVQAFLFNDYWEDIGTIKSFF 364
VQA+L++ YWEDIGTI++F+
Sbjct: 267 MRVQAYLYDGYWEDIGTIEAFY 288
>pdb|3BRK|X Chain X, Crystal Structure Of Adp-Glucose Pyrophosphorylase From
Agrobacterium Tumefaciens
Length = 420
Score = 169 bits (429), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 104/289 (35%), Positives = 157/289 (54%), Gaps = 35/289 (12%)
Query: 91 KNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNS 150
++ A +L GG G+RL LT+RRAKPAV GG R+ID +SN +NSG +I + TQ+ +
Sbjct: 11 RDAXAYVLAGGRGSRLKELTDRRAKPAVYFGGKARIIDFALSNALNSGIRRIGVATQYKA 70
Query: 151 FSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKN 210
SL RHL R ++ + F ++L A+Q E +W++GTADAV Q I + E
Sbjct: 71 HSLIRHLQRGWDFFRP-ERNESF-DILPASQRVSET--QWYEGTADAVYQNIDIIEPYAP 126
Query: 211 KNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQII 270
E +IL+GDH+Y+ DY LQ+H+D+ AD+T+ C+ + A+ +G+ ++ +II
Sbjct: 127 ---EYXVILAGDHIYKXDYEYXLQQHVDSGADVTIGCLEVPRXEATGFGVXHVNEKDEII 183
Query: 271 QFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLR--SSYPLS 328
F EKP P +P F +AS G+Y+F T L +R ++ P S
Sbjct: 184 DFIEKPADPP-------------GIPGNEGFA-LASXGIYVFHTKFLXEAVRRDAADPTS 229
Query: 329 N-DFGSEIIPASVKDHNVQAFLFND-----------YWEDIGTIKSFFM 365
+ DFG +IIP V+ A F D YW D+GTI +++
Sbjct: 230 SRDFGKDIIPYIVEHGKAVAHRFADSCVRSDFEHEPYWRDVGTIDAYWQ 278
>pdb|1LVW|A Chain A, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
pdb|1LVW|B Chain B, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
pdb|1LVW|C Chain C, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
pdb|1LVW|D Chain D, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
Length = 295
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 86/188 (45%), Gaps = 23/188 (12%)
Query: 92 NVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSF 151
++ I+L GG+GTRL+P+T +K +PI + +I P+S + +G I I++
Sbjct: 3 HMKGIVLAGGSGTRLYPITRAVSKQLLPI-YDKPMIYYPLSVLMLAGIRDILIISTPRDL 61
Query: 152 SLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNK 211
L R L LG+G FG F + P +G ADA FI + +
Sbjct: 62 PLYRDL-----LGDGSQFGVRF--SYRVQEEP--------RGIADA---FIVGKDFIGDS 103
Query: 212 NVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQ 271
V L+L + Y ++E L++ + + + D R +G+++ D G++I
Sbjct: 104 KV--ALVLGDNVFYGHRFSEILRRAASLEDGAVIFGYYVRDPRP--FGVVEFDSEGRVIS 159
Query: 272 FAEKPKGP 279
EKP P
Sbjct: 160 IEEKPSRP 167
>pdb|3HL3|A Chain A, 2.76 Angstrom Crystal Structure Of A Putative
Glucose-1-Phosphate Thymidylyltransferase From Bacillus
Anthracis In Complex With A Sucrose.
pdb|4ECM|A Chain A, 2.3 Angstrom Crystal Structure Of A Glucose-1-Phosphate
Thymidylyltransferase From Bacillus Anthracis In Complex
With Thymidine-5-Diphospho-Alpha-D-Glucose And
Pyrophosphate
Length = 269
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 93/216 (43%), Gaps = 32/216 (14%)
Query: 93 VAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFS 152
+ IIL GG G+RL+P+T K +P+ G Y +I + I I+T
Sbjct: 25 MKGIILAGGTGSRLYPITKVTNKHLLPV-GRYPMIYHAVYKLKQCDITDIMIITG----- 78
Query: 153 LNRHLARSYN-LGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNK 211
H+ + LG+G FG F + Q A + Q + + ED
Sbjct: 79 -KEHMGDVVSFLGSGQEFGVSFTYRV--------------QDKAGGIAQALGLCEDFVGN 123
Query: 212 NVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQ 271
+ ++++ GD+++ D ++++ + K V +DD +G+ I ++ +II+
Sbjct: 124 --DRMVVILGDNIFSDDIRPYVEEFTNQKEGAKVLLQSVDD--PERFGVANI-QNRKIIE 178
Query: 272 FAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASM 307
EKPK P + + G+ + D+ F YI +
Sbjct: 179 IEEKPKEP-----KSSYAVTGIYLYDSKVFSYIKEL 209
>pdb|1H5S|D Chain D, Thymidylyltransferase Complexed With Tmp
Length = 293
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 83/185 (44%), Gaps = 23/185 (12%)
Query: 95 AIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLN 154
IIL GG+GTRL+P+T +K +PI + +I P+S + +G I I++
Sbjct: 6 GIILAGGSGTRLYPVTMAVSKQLLPI-YDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 155 RHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVE 214
+ L LG+G +G + Q + D + Q + E+ + +
Sbjct: 65 QQL-----LGDGSQWGLNL--------------QYKVQPSPDGLAQAFIIGEEFIGAD-D 104
Query: 215 NVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQFAE 274
L+L + Y D + ++ ++ ++ TV ++D YG+++ D++G I E
Sbjct: 105 CALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVND--PERYGVVEFDKNGTAISLEE 162
Query: 275 KPKGP 279
KP P
Sbjct: 163 KPLEP 167
>pdb|1H5S|A Chain A, Thymidylyltransferase Complexed With Tmp
Length = 293
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 83/185 (44%), Gaps = 23/185 (12%)
Query: 95 AIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLN 154
IIL GG+GTRL+P+T +K +PI + +I P+S + +G I I++
Sbjct: 6 GIILAGGSGTRLYPVTMAVSKQLLPI-YDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 155 RHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVE 214
+ L LG+G +G + Q + D + Q + E+ + +
Sbjct: 65 QQL-----LGDGSQWGLNL--------------QYKVQPSPDGLAQAFIIGEEFIGGD-D 104
Query: 215 NVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQFAE 274
L+L + Y D + ++ ++ ++ TV ++D YG+++ D++G I E
Sbjct: 105 CALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVND--PERYGVVEFDKNGTAISLEE 162
Query: 275 KPKGP 279
KP P
Sbjct: 163 KPLEP 167
>pdb|1H5T|A Chain A, Thymidylyltransferase Complexed With
Thymidylyldiphosphate- Glucose
pdb|1H5R|A Chain A, Thymidylyltransferase Complexed With Thimidine And
Glucose- 1-Phospate
pdb|1H5R|C Chain C, Thymidylyltransferase Complexed With Thimidine And
Glucose- 1-Phospate
pdb|1H5R|D Chain D, Thymidylyltransferase Complexed With Thimidine And
Glucose- 1-Phospate
pdb|1H5T|C Chain C, Thymidylyltransferase Complexed With
Thymidylyldiphosphate- Glucose
pdb|1H5T|D Chain D, Thymidylyltransferase Complexed With
Thymidylyldiphosphate- Glucose
pdb|1H5S|C Chain C, Thymidylyltransferase Complexed With Tmp
Length = 293
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 83/185 (44%), Gaps = 23/185 (12%)
Query: 95 AIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLN 154
IIL GG+GTRL+P+T +K +PI + +I P+S + +G I I++
Sbjct: 6 GIILAGGSGTRLYPVTMAVSKQLLPI-YDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 155 RHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVE 214
+ L LG+G +G + Q + D + Q + E+ + +
Sbjct: 65 QQL-----LGDGSQWGLNL--------------QYKVQPSPDGLAQAFIIGEEFIGGD-D 104
Query: 215 NVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQFAE 274
L+L + Y D + ++ ++ ++ TV ++D YG+++ D++G I E
Sbjct: 105 CALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVND--PERYGVVEFDKNGTAISLEE 162
Query: 275 KPKGP 279
KP P
Sbjct: 163 KPLEP 167
>pdb|1H5R|B Chain B, Thymidylyltransferase Complexed With Thimidine And
Glucose- 1-Phospate
pdb|1H5T|B Chain B, Thymidylyltransferase Complexed With
Thymidylyldiphosphate- Glucose
pdb|1H5S|B Chain B, Thymidylyltransferase Complexed With Tmp
Length = 293
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 83/185 (44%), Gaps = 23/185 (12%)
Query: 95 AIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLN 154
IIL GG+GTRL+P+T +K +PI + +I P+S + +G I I++
Sbjct: 6 GIILAGGSGTRLYPVTMAVSKQLLPI-YDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 155 RHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVE 214
+ L LG+G +G + Q + D + Q + E+ + +
Sbjct: 65 QQL-----LGDGSQWGLNL--------------QYKVQPSPDGLAQAFIIGEEFIGGD-D 104
Query: 215 NVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQFAE 274
L+L + Y D + ++ ++ ++ TV ++D YG+++ D++G I E
Sbjct: 105 CALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVND--PERYGVVEFDKNGTAISLEE 162
Query: 275 KPKGP 279
KP P
Sbjct: 163 KPLEP 167
>pdb|1MP5|A Chain A, Y177f Variant Of S. Enterica Rmla
pdb|1MP5|B Chain B, Y177f Variant Of S. Enterica Rmla
pdb|1MP5|C Chain C, Y177f Variant Of S. Enterica Rmla
pdb|1MP5|D Chain D, Y177f Variant Of S. Enterica Rmla
Length = 292
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 84/189 (44%), Gaps = 23/189 (12%)
Query: 91 KNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNS 150
K IIL GG+GTRL+P+T ++ +PI + +I P+S + +G I I++
Sbjct: 2 KTRKGIILAGGSGTRLYPVTMAVSQQLLPI-YDKPMIYYPLSTLMLAGIRDILIISTPQD 60
Query: 151 FSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKN 210
+ L LG+G +G + Q + D + Q + E+
Sbjct: 61 TPRFQQL-----LGDGSQWGLNL--------------QYKVQPSPDGLAQAFIIGEEFIG 101
Query: 211 KNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQII 270
+ + L+L + Y D + ++ ++ ++ TV ++D YG+++ D++G +
Sbjct: 102 HD-DCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVND--PERYGVVEFDQAGTAV 158
Query: 271 QFAEKPKGP 279
EKP P
Sbjct: 159 SLEEKPLQP 167
>pdb|1MP4|A Chain A, W224h Variant Of S. Enterica Rmla
pdb|1MP4|B Chain B, W224h Variant Of S. Enterica Rmla
Length = 292
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 84/189 (44%), Gaps = 23/189 (12%)
Query: 91 KNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNS 150
K IIL GG+GTRL+P+T ++ +PI + +I P+S + +G I I++
Sbjct: 2 KTRKGIILAGGSGTRLYPVTMAVSQQLLPI-YDKPMIYYPLSTLMLAGIRDILIISTPQD 60
Query: 151 FSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKN 210
+ L LG+G +G + Q + D + Q + E+
Sbjct: 61 TPRFQQL-----LGDGSQWGLNL--------------QYKVQPSPDGLAQAFIIGEEFIG 101
Query: 211 KNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQII 270
+ + L+L + Y D + ++ ++ ++ TV ++D YG+++ D++G +
Sbjct: 102 HD-DCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVND--PERYGVVEFDQAGTAV 158
Query: 271 QFAEKPKGP 279
EKP P
Sbjct: 159 SLEEKPLQP 167
>pdb|1MP3|A Chain A, L89t Variant Of S. Enterica Rmla
pdb|1MP3|B Chain B, L89t Variant Of S. Enterica Rmla
Length = 292
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 83/189 (43%), Gaps = 23/189 (12%)
Query: 91 KNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNS 150
K IIL GG+GTRL+P+T ++ +PI + +I P+S + +G I I++
Sbjct: 2 KTRKGIILAGGSGTRLYPVTMAVSQQLLPI-YDKPMIYYPLSTLMLAGIRDILIISTPQD 60
Query: 151 FSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKN 210
+ L LG+G +G + Q + D Q + E+
Sbjct: 61 TPRFQQL-----LGDGSQWGLNL--------------QYKVQPSPDGTAQAFIIGEEFIG 101
Query: 211 KNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQII 270
+ + L+L + Y D + ++ ++ ++ TV ++D YG+++ D++G +
Sbjct: 102 HD-DCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVND--PERYGVVEFDQAGTAV 158
Query: 271 QFAEKPKGP 279
EKP P
Sbjct: 159 SLEEKPLQP 167
>pdb|1IIM|A Chain A, Thymidylyltransferase Complexed With Ttp
pdb|1IIM|B Chain B, Thymidylyltransferase Complexed With Ttp
pdb|1IIN|A Chain A, Thymidylyltransferase Complexed With Udp-Glucose
pdb|1IIN|B Chain B, Thymidylyltransferase Complexed With Udp-Glucose
pdb|1IIN|C Chain C, Thymidylyltransferase Complexed With Udp-Glucose
pdb|1IIN|D Chain D, Thymidylyltransferase Complexed With Udp-Glucose
Length = 292
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 83/189 (43%), Gaps = 23/189 (12%)
Query: 91 KNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNS 150
K IIL GG+GTRL+P+T ++ +PI + +I P+S + +G I I++
Sbjct: 2 KTRKGIILAGGSGTRLYPVTMAVSQQLLPI-YDKPMIYYPLSTLMLAGIRDILIISTPQD 60
Query: 151 FSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKN 210
+ L LG+G +G + Q + D + Q + E+
Sbjct: 61 TPRFQQL-----LGDGSQWGLNL--------------QYKVQPSPDGLAQAFIIGEEFIG 101
Query: 211 KNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQII 270
+ + L+L + Y D + ++ ++ ++ TV ++D YG+++ D+ G +
Sbjct: 102 HD-DCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVND--PERYGVVEFDQKGTAV 158
Query: 271 QFAEKPKGP 279
EKP P
Sbjct: 159 SLEEKPLQP 167
>pdb|3PKP|A Chain A, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|B Chain B, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|C Chain C, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|D Chain D, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|I Chain I, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|J Chain J, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|K Chain K, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|L Chain L, Q83s Variant Of S. Enterica Rmla With Datp
Length = 292
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 84/189 (44%), Gaps = 23/189 (12%)
Query: 91 KNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNS 150
K IIL GG+GTRL+P+T +K +PI + +I P+S + +G I I++
Sbjct: 2 KTRKGIILAGGSGTRLYPVTMAVSKQLLPI-YDKPMIYYPLSTLMLAGIRDILIISTPQD 60
Query: 151 FSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKN 210
+ L LG+G +G L +P + D + Q + E+
Sbjct: 61 TPRFQQL-----LGDGSQWGLN----LQYKVSP----------SPDGLAQAFIIGEEFIG 101
Query: 211 KNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQII 270
+ + L+L + Y D + ++ ++ ++ TV ++D YG+++ D+ G +
Sbjct: 102 HD-DCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVND--PERYGVVEFDQKGTAV 158
Query: 271 QFAEKPKGP 279
EKP P
Sbjct: 159 SLEEKPLQP 167
>pdb|4ARW|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ARW|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ARW|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ARW|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
Length = 302
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 82/185 (44%), Gaps = 23/185 (12%)
Query: 95 AIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLN 154
IIL GG+GTRL P T +K +P+ + +I P+S + +G +I I++
Sbjct: 14 GIILAGGSGTRLHPATLAISKQLLPV-YDKPMIYYPLSTLMLAGIREILIISTPQDTPRF 72
Query: 155 RHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVE 214
+ L LG+G N+G +++ A Q + D + Q + E ++
Sbjct: 73 QQL-----LGDGSNWG---LDLQYAVQP-----------SPDGLAQAFLIGESFIGNDL- 112
Query: 215 NVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQFAE 274
+ L+L + Y D+ E L + +V + D YG+++ D+ G+ I E
Sbjct: 113 SALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLD--PERYGVVEFDQGGKAISLEE 170
Query: 275 KPKGP 279
KP P
Sbjct: 171 KPLEP 175
>pdb|1FXO|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FZW|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1G0R|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G1L|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G2V|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G3L|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-L-Rhamnose Complex.
pdb|1G3L|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-L-Rhamnose Complex.
pdb|1G3L|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-L-Rhamnose Complex.
pdb|1G3L|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-L-Rhamnose Complex.
pdb|4ASJ|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASJ|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASJ|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASJ|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASY|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASY|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASY|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASY|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
Length = 293
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 82/185 (44%), Gaps = 23/185 (12%)
Query: 95 AIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLN 154
IIL GG+GTRL P T +K +P+ + +I P+S + +G +I I++
Sbjct: 5 GIILAGGSGTRLHPATLAISKQLLPV-YDKPMIYYPLSTLMLAGIREILIISTPQDTPRF 63
Query: 155 RHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVE 214
+ L LG+G N+G +++ A Q + D + Q + E ++
Sbjct: 64 QQL-----LGDGSNWG---LDLQYAVQP-----------SPDGLAQAFLIGESFIGNDL- 103
Query: 215 NVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQFAE 274
+ L+L + Y D+ E L + +V + D YG+++ D+ G+ I E
Sbjct: 104 SALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLD--PERYGVVEFDQGGKAISLEE 161
Query: 275 KPKGP 279
KP P
Sbjct: 162 KPLEP 166
>pdb|4B2X|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B2X|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B2X|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B2X|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B3U|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B3U|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B3U|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B3U|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B42|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B42|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B42|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B42|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4B|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4B|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4B|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4B|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4G|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4G|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4G|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4G|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4M|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4M|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4M|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4M|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B5B|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B5B|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B5B|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B5B|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLK|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLK|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLK|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLK|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLL|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLL|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLL|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLL|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
Length = 303
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 82/185 (44%), Gaps = 23/185 (12%)
Query: 95 AIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLN 154
IIL GG+GTRL P T +K +P+ + +I P+S + +G +I I++
Sbjct: 15 GIILAGGSGTRLHPATLAISKQLLPV-YDKPMIYYPLSTLMLAGIREILIISTPQDTPRF 73
Query: 155 RHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVE 214
+ L LG+G N+G +++ A Q + D + Q + E ++
Sbjct: 74 QQL-----LGDGSNWG---LDLQYAVQP-----------SPDGLAQAFLIGESFIGNDL- 113
Query: 215 NVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQFAE 274
+ L+L + Y D+ E L + +V + D YG+++ D+ G+ I E
Sbjct: 114 SALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLD--PERYGVVEFDQGGKAISLEE 171
Query: 275 KPKGP 279
KP P
Sbjct: 172 KPLEP 176
>pdb|3PKQ|A Chain A, Q83d Variant Of S. Enterica Rmla With Dgtp
pdb|3PKQ|B Chain B, Q83d Variant Of S. Enterica Rmla With Dgtp
pdb|3PKQ|C Chain C, Q83d Variant Of S. Enterica Rmla With Dgtp
pdb|3PKQ|D Chain D, Q83d Variant Of S. Enterica Rmla With Dgtp
Length = 292
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 82/189 (43%), Gaps = 23/189 (12%)
Query: 91 KNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNS 150
K IIL GG+GTRL+P+T +K +PI + +I P+S + +G I I++
Sbjct: 2 KTRKGIILAGGSGTRLYPVTMAVSKQLLPI-YDKPMIYYPLSTLMLAGIRDILIISTPQD 60
Query: 151 FSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKN 210
+ L LG+G +G + + D + Q + E+
Sbjct: 61 TPRFQQL-----LGDGSQWGLNL--------------QYKVDPSPDGLAQAFIIGEEFIG 101
Query: 211 KNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQII 270
+ + L+L + Y D + ++ ++ ++ TV ++D YG+++ D+ G +
Sbjct: 102 HD-DCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVND--PERYGVVEFDQKGTAV 158
Query: 271 QFAEKPKGP 279
EKP P
Sbjct: 159 SLEEKPLQP 167
>pdb|1G23|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex
Length = 293
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 80/185 (43%), Gaps = 23/185 (12%)
Query: 95 AIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLN 154
IIL GG+GTRL P T +K +P+ + I P+S +G +I I++
Sbjct: 5 GIILAGGSGTRLHPATLAISKQLLPV-YDKPXIYYPLSTLXLAGIREILIISTPQDTPRF 63
Query: 155 RHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVE 214
+ L LG+G N+G +++ A Q + D + Q + E ++
Sbjct: 64 QQL-----LGDGSNWG---LDLQYAVQP-----------SPDGLAQAFLIGESFIGNDL- 103
Query: 215 NVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQFAE 274
+ L+L + Y D+ E L + +V + D YG+++ D+ G+ I E
Sbjct: 104 SALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLD--PERYGVVEFDQGGKAISLEE 161
Query: 275 KPKGP 279
KP P
Sbjct: 162 KPLEP 166
>pdb|1MC3|A Chain A, Crystal Structure Of Rffh
pdb|1MC3|B Chain B, Crystal Structure Of Rffh
Length = 296
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 82/186 (44%), Gaps = 25/186 (13%)
Query: 95 AIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLN 154
IIL GG+GTRL P+T +K +PI + I P+S +G +I I+T
Sbjct: 6 GIILAGGSGTRLHPITRGVSKQLLPI-YDKPXIYYPLSVLXLAGIREILIITTPEDKGYF 64
Query: 155 RHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVE 214
+ L LG+G FG +++ A Q + D + Q + E N
Sbjct: 65 QRL-----LGDGSEFG---IQLEYAEQP-----------SPDGLAQAFIIGETFLNGE-P 104
Query: 215 NVLILSGDHLYRMDYTEFLQKHIDTKAD-ITVSCVPMDDCRASDYGLMKIDRSGQIIQFA 273
+ L+L + + ++ L +H+ + + TV + D +G+++ D + + I
Sbjct: 105 SCLVLGDNIFFGQGFSPKL-RHVAARTEGATVFGYQVXD--PERFGVVEFDDNFRAISLE 161
Query: 274 EKPKGP 279
EKPK P
Sbjct: 162 EKPKQP 167
>pdb|1TZF|A Chain A, X-Ray Crystal Structure Of Alpha-D-Glucose-1-Phosphate
Cytidylyltransferase From Salmonella Typhi
pdb|1WVC|A Chain A, Alpha-D-Glucose-1-Phosphate Cytidylyltransferase Complexed
With Ctp
Length = 259
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 80/197 (40%), Gaps = 32/197 (16%)
Query: 95 AIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLN 154
A+IL GG GTRL T + KP V IGG L I ++ G I + + +
Sbjct: 5 AVILAGGLGTRLSEETIVKPKPMVEIGGKPILWHIMKMYSVH-GIKDFIICCGYKGYVIK 63
Query: 155 RHLARSYNLGNGVNF--GDGFVEVLAATQTP--------GEAGKKWFQGTADAVRQFIWV 204
+ A + + V F + +EV P G++ G V +++
Sbjct: 64 EYFANYFLHMSDVTFHMAENRMEVHHKRVEPWNVTLVDTGDSSMT--GGRLKRVAEYV-- 119
Query: 205 FEDAKNKNVENVLILSGDHLYRMDY---TEFLQKHIDTKADITVSCVPMDDCRASDYGLM 261
K+ E L GD + +D +F + H KA +T + P +G +
Sbjct: 120 ------KDDEAFLFTYGDGVADLDIKATIDFHKAH-GKKATLTATFPP------GRFGAL 166
Query: 262 KIDRSGQIIQFAEKPKG 278
I ++GQ+ F EKPKG
Sbjct: 167 DI-QAGQVRSFQEKPKG 182
>pdb|2E3D|A Chain A, Crystal Structure Of E. Coli Glucose-1-Phosphate
Uridylyltransferase
pdb|2E3D|B Chain B, Crystal Structure Of E. Coli Glucose-1-Phosphate
Uridylyltransferase
pdb|2E3D|C Chain C, Crystal Structure Of E. Coli Glucose-1-Phosphate
Uridylyltransferase
pdb|2E3D|D Chain D, Crystal Structure Of E. Coli Glucose-1-Phosphate
Uridylyltransferase
Length = 302
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 95 AIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLN 154
A+I G GTR+ P T K +P+ + LI ++ CI +G +I ++T + S+
Sbjct: 11 AVIPVAGLGTRMLPATKAIPKEMLPL-VDKPLIQYVVNECIAAGITEIVLVTHSSKNSIE 69
Query: 155 RHLARSYNL 163
H S+ L
Sbjct: 70 NHFDTSFEL 78
>pdb|2GGO|A Chain A, Crystal Structure Of Glucose-1-Phosphate
Thymidylyltransferase From Sulfolobus Tokodaii
pdb|2GGQ|A Chain A, Complex Of Hypothetical Glucose-1-Phosphate
Thymidylyltransferase From Sulfolobus Tokodaii
Length = 401
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 62/265 (23%), Positives = 99/265 (37%), Gaps = 58/265 (21%)
Query: 95 AIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLN 154
A IL G+G RL P+T+ R K VPI LI+ + G I ++ S N
Sbjct: 3 AFILAAGSGERLEPITHTRPKAFVPILSK-PLIEYQIEYLRKCGIRDITVIVS----SKN 57
Query: 155 RHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVE 214
+ F E+ TQ K +GT A+ F D
Sbjct: 58 KEY-----------FEKKLKEISIVTQ------KDDIKGTGAAILS--AKFND------- 91
Query: 215 NVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQFAE 274
LI+ GD L+ + E +I T + + V + + + DYG++ +D + + E
Sbjct: 92 EALIIYGD-LFFSNEKEIC--NIITLKENAIIGVKVSNPK--DYGVLVLDNQNNLSKIIE 146
Query: 275 KPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFG-S 333
KP+ P + + G+Y +D+ L + S + +
Sbjct: 147 KPEIPP---------------------SNLINAGIYKLNSDIFTYLDKISISERGELELT 185
Query: 334 EIIPASVKDHNVQAFLFNDYWEDIG 358
+ I KDH V+ + YW DIG
Sbjct: 186 DAINLMAKDHRVKVIEYEGYWMDIG 210
>pdb|1JYK|A Chain A, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae (Licc)
Length = 254
Score = 35.0 bits (79), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 93 VAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQF 148
V AIIL G GTRL PLT K V + LI+ + G N I I+ +
Sbjct: 26 VKAIILAAGLGTRLRPLTENTPKALVQVNQK-PLIEYQIEFLKEKGINDIIIIVGY 80
>pdb|1JYL|A Chain A, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae (Licc)
pdb|1JYL|B Chain B, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae (Licc)
pdb|1JYL|C Chain C, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae (Licc)
pdb|1JYL|D Chain D, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae (Licc)
Length = 254
Score = 34.7 bits (78), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 93 VAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQF 148
V AIIL G GTRL PLT K V + LI+ + G N I I+ +
Sbjct: 26 VKAIILAAGLGTRLRPLTENTPKALVQVNQK-PLIEYQIEFLKEKGINDIIIIVGY 80
>pdb|2JQN|A Chain A, Solution Nmr Structure Of Cc0527 From Caulobacter
Crescentus. Northeast Structural Genomics Target Ccr55
Length = 122
Score = 32.0 bits (71), Expect = 0.58, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 164 GNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAV 198
G+ V+ DGF+ L+A + E KWF+G A+ V
Sbjct: 24 GSAVDLADGFIH-LSAGEQAQETAAKWFRGQANLV 57
>pdb|2O0Q|A Chain A, X-Ray Crystal Structure Of Protein Cc0527 From Caulobacter
Crescentus. Northeast Structural Genomics Consortium
Target Ccr55
Length = 115
Score = 32.0 bits (71), Expect = 0.58, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 164 GNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAV 198
G+ V+ DGF+ L+A + E KWF+G A+ V
Sbjct: 24 GSAVDLADGFIH-LSAGEQAQETAAKWFRGQANLV 57
>pdb|3JUJ|A Chain A, The Crystal Structure Of Apo- Udp-Glucose
Pyrophosphorylase
pdb|3JUJ|B Chain B, The Crystal Structure Of Apo- Udp-Glucose
Pyrophosphorylase
pdb|3JUJ|C Chain C, The Crystal Structure Of Apo- Udp-Glucose
Pyrophosphorylase
pdb|3JUJ|D Chain D, The Crystal Structure Of Apo- Udp-Glucose
Pyrophosphorylase
pdb|3JUK|A Chain A, The Crystal Structure Of Udp-Glucose Pyrophosphorylase
Compl Udp-Glucose
pdb|3JUK|B Chain B, The Crystal Structure Of Udp-Glucose Pyrophosphorylase
Compl Udp-Glucose
pdb|3JUK|C Chain C, The Crystal Structure Of Udp-Glucose Pyrophosphorylase
Compl Udp-Glucose
pdb|3JUK|D Chain D, The Crystal Structure Of Udp-Glucose Pyrophosphorylase
Compl Udp-Glucose
Length = 281
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 99 GGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLA 158
G GTR P+T K +PI + LI + + +G + I+T N SL +
Sbjct: 9 AAGYGTRFLPITKTIPKEMLPI-VDKPLIQYAVEEAMEAGCEVMAIVTGRNKRSLEDYFD 67
Query: 159 RSYNLGNGVN 168
SY + + +
Sbjct: 68 TSYEIEHQIQ 77
>pdb|2CU2|A Chain A, Crystal Structure Of Mannose-1-Phosphate
Geranyltransferase From Thermus Thermophilus Hb8
Length = 337
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 53/250 (21%), Positives = 98/250 (39%), Gaps = 58/250 (23%)
Query: 95 AIILGGGAGTRLFPLTNR-RAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSL 153
A+++ GG G RL+PL+ R KP +P+ L++ + + + ++
Sbjct: 5 ALVMAGGRGERLWPLSREDRPKPFLPLFEGKTLLEATLERLAP------LVPPERTLLAV 58
Query: 154 NRH---LARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKN 210
R +AR Y +G+ +E L + TA AV + +A
Sbjct: 59 RRDQEAVARPY--ADGIRL---LLEPLG-------------RDTAGAV---LLGVAEALK 97
Query: 211 KNVENVLILSGDHLYRMD--YTEFLQKHIDTKADITVSCVPMDDCR-ASDYGLMKID-RS 266
+ E +L+L DH D Y E L ++ + V + + R ++YG +++ R
Sbjct: 98 EGAERLLVLPADHYVGDDEAYREALATMLEAAEEGFVVALGLRPTRPETEYGYIRLGPRE 157
Query: 267 GQIIQ---FAEKPKGPDLKGMQCDTTLLGLSMPDAVKF---PYIASMGVYLFRTDVLLNL 320
G + F EKP S +A+++ Y+ + GV+ F + L
Sbjct: 158 GAWYRGEGFVEKP-----------------SYAEALEYIRKGYVWNGGVFAFAPATMAEL 200
Query: 321 LRSSYPLSND 330
R P ++
Sbjct: 201 FRRHLPSHHE 210
>pdb|2O0P|A Chain A, X-Ray Crystal Structure Of Protein Cc0527 (V27m L66M
Double Mutant) From Caulobacter Crescentus. Northeast
Structural Genomics Consortium Target Ccr55
Length = 122
Score = 30.0 bits (66), Expect = 2.5, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 164 GNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAV 198
G+ + DGF+ L+A + E KWF+G A+ V
Sbjct: 24 GSAXDLADGFIH-LSAGEQAQETAAKWFRGQANLV 57
>pdb|3RSB|A Chain A, Structure Of The Archaeal Gtp:adocbi-P Guanylyltransferase
(Coby) From Methanocaldococcus Jannaschii
pdb|3RSB|B Chain B, Structure Of The Archaeal Gtp:adocbi-P Guanylyltransferase
(Coby) From Methanocaldococcus Jannaschii
pdb|3RSB|C Chain C, Structure Of The Archaeal Gtp:adocbi-P Guanylyltransferase
(Coby) From Methanocaldococcus Jannaschii
pdb|3RSB|D Chain D, Structure Of The Archaeal Gtp:adocbi-P Guanylyltransferase
(Coby) From Methanocaldococcus Jannaschii
Length = 196
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 95 AIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLN 154
A+I GG GTR KP + + G LID +S + S N IFI T N+
Sbjct: 3 ALIXAGGKGTR----XGGVEKPLIKLCGRC-LIDYVVSPLLKSKVNNIFIATSPNTPKTK 57
Query: 155 RHLARSY 161
++ +Y
Sbjct: 58 EYINSAY 64
>pdb|2UX8|A Chain A, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|B Chain B, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|C Chain C, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|D Chain D, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|E Chain E, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|F Chain F, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|G Chain G, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|H Chain H, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate
Length = 297
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 101 GAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARS 160
G GTR P T K +P+ + LI + + +G ++ +T +L H +
Sbjct: 23 GLGTRFLPATKAMPKEMLPV-VDRPLIQYAVDEAVEAGIEQMIFVTGRGKSALEDHFDIA 81
Query: 161 YNL 163
Y L
Sbjct: 82 YEL 84
>pdb|3UPU|A Chain A, Crystal Structure Of The T4 Phage Sf1b Helicase Dda
pdb|3UPU|B Chain B, Crystal Structure Of The T4 Phage Sf1b Helicase Dda
pdb|3UPU|C Chain C, Crystal Structure Of The T4 Phage Sf1b Helicase Dda
Length = 459
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 10/79 (12%)
Query: 33 LKSWDLNFGSRV--WKNLRTEKINKNVTKPGVAYSILTSDTN---KETVTFQAPMFETPQ 87
+KS D F +RV + N +K+N + K I +D + E + Q P+F+T +
Sbjct: 246 VKSLDDLFENRVXAFTNKSVDKLNSIIRK-----KIFETDKDFIVGEIIVXQEPLFKTYK 300
Query: 88 ADPKNVAAIILGGGAGTRL 106
D K V+ II G R+
Sbjct: 301 IDGKPVSEIIFNNGQLVRI 319
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 17 VSNRNTGFWGGSVKGSLKSWDLNFGSRVWKNLRTEKI 53
+SN T W G + +++SWDL G ++ ++ T +I
Sbjct: 191 ISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQI 227
>pdb|2W18|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Human
Palb2
Length = 356
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/129 (17%), Positives = 52/129 (40%), Gaps = 11/129 (8%)
Query: 17 VSNRNTGFWGGSVKGSLKSWDLNFGSRVWK-----NLRTEKINKNVTKPGVAYSILTSDT 71
V G ++ ++ W+L G + K + + +K ++ G+ + +L+
Sbjct: 189 VQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPC 248
Query: 72 NKETVTFQAPMFETPQADPKNVAAI------ILGGGAGTRLFPLTNRRAKPAVPIGGNYR 125
KE+ + ++P+F+ +PK ++ + G AG L A+ G
Sbjct: 249 AKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIA 308
Query: 126 LIDIPMSNC 134
+ D+ + C
Sbjct: 309 IWDLLLGQC 317
>pdb|3EU7|A Chain A, Crystal Structure Of A Palb2 BRCA2 COMPLEX
Length = 356
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/129 (17%), Positives = 52/129 (40%), Gaps = 11/129 (8%)
Query: 17 VSNRNTGFWGGSVKGSLKSWDLNFGSRVWK-----NLRTEKINKNVTKPGVAYSILTSDT 71
V G ++ ++ W+L G + K + + +K ++ G+ + +L+
Sbjct: 189 VQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPC 248
Query: 72 NKETVTFQAPMFETPQADPKNVAAI------ILGGGAGTRLFPLTNRRAKPAVPIGGNYR 125
KE+ + ++P+F+ +PK ++ + G AG L A+ G
Sbjct: 249 AKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHXAAAILTSGTIA 308
Query: 126 LIDIPMSNC 134
+ D+ + C
Sbjct: 309 IWDLLLGQC 317
>pdb|2X4H|A Chain A, Crystal Structure Of The Hypothetical Protein Sso2273 From
Sulfolobus Solfataricus
pdb|2X4H|B Chain B, Crystal Structure Of The Hypothetical Protein Sso2273 From
Sulfolobus Solfataricus
pdb|2X4H|C Chain C, Crystal Structure Of The Hypothetical Protein Sso2273 From
Sulfolobus Solfataricus
pdb|2X4H|D Chain D, Crystal Structure Of The Hypothetical Protein Sso2273 From
Sulfolobus Solfataricus
Length = 139
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 353 YWEDIGTIKSFFMPIWPSQNSLRSLNFMIPRHLSIRLL 390
+ E+ G +K +W + N RS+N++I H I +L
Sbjct: 54 HLEEKGLVKKKEDGVWITNNGTRSINYLIKAHRVIEIL 91
>pdb|3VOC|A Chain A, Crystal Structure Of The Catalytic Domain Of Beta-amylase
From Paenibacillus Polymyxa
Length = 419
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 27/114 (23%)
Query: 170 GDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVL------ILSGDH 223
GDGF G+ W+Q + + + V A +KN ++V +SG H
Sbjct: 228 GDGFYTNGGYNSAYGKDFLSWYQ---SVLEKHLGVIGAAAHKNFDSVFGVRIGAKISGLH 284
Query: 224 LYRM----------------DYTEFLQKHIDTKADITVSCVPMDDC-RASDYGL 260
++M DY +QK D D+T +C+ M D A +Y L
Sbjct: 285 -WQMNNPAMPHGTEQAGGYYDYNRLIQKFKDADLDLTFTCLEMSDSGTAPNYSL 337
>pdb|2XR7|A Chain A, Crystal Structure Of Nicotiana Tabacum Malonyltransferase
(Ntmat1) Complexed With Malonyl-Coa
Length = 453
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 13/91 (14%)
Query: 169 FGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMD 228
FG+ V +A T+ AGK+ F + + + I + + + ILSG D
Sbjct: 319 FGNALVGYVARTRQVDLAGKEGFTIAVELIGEAI------RKRXKDEEWILSGSWFKEYD 372
Query: 229 YTEFLQKHIDTKADITVSCVPMDDCRASDYG 259
+D K ++V+ P D A+D+G
Sbjct: 373 -------KVDAKRSLSVAGSPKLDLYAADFG 396
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,161,770
Number of Sequences: 62578
Number of extensions: 516895
Number of successful extensions: 1227
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1173
Number of HSP's gapped (non-prelim): 49
length of query: 402
length of database: 14,973,337
effective HSP length: 101
effective length of query: 301
effective length of database: 8,652,959
effective search space: 2604540659
effective search space used: 2604540659
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)