Query 015713
Match_columns 402
No_of_seqs 224 out of 1815
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 08:52:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015713.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015713hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1322 GDP-mannose pyrophosph 100.0 3.9E-58 8.5E-63 438.4 24.0 266 86-399 4-270 (371)
2 COG0448 GlgC ADP-glucose pyrop 100.0 4.7E-56 1E-60 437.5 22.1 280 90-395 3-293 (393)
3 PLN02241 glucose-1-phosphate a 100.0 1.1E-47 2.3E-52 394.9 30.9 306 90-397 1-315 (436)
4 PRK02862 glgC glucose-1-phosph 100.0 5.4E-44 1.2E-48 366.7 30.2 299 90-397 1-308 (429)
5 PRK00844 glgC glucose-1-phosph 100.0 7.1E-43 1.5E-47 356.2 28.9 281 89-392 2-305 (407)
6 PRK05293 glgC glucose-1-phosph 100.0 7.1E-42 1.5E-46 345.3 29.1 278 90-395 1-291 (380)
7 PRK00725 glgC glucose-1-phosph 100.0 1.5E-41 3.3E-46 348.2 29.7 281 90-391 13-315 (425)
8 TIGR01105 galF UTP-glucose-1-p 100.0 3.6E-40 7.8E-45 322.7 27.9 244 90-371 1-277 (297)
9 PRK10122 GalU regulator GalF; 100.0 6.6E-40 1.4E-44 321.1 27.7 246 90-373 1-280 (297)
10 PF00483 NTP_transferase: Nucl 100.0 2E-40 4.4E-45 314.3 22.9 241 94-372 1-247 (248)
11 COG1208 GCD1 Nucleoside-diphos 100.0 5.5E-39 1.2E-43 322.1 27.3 258 92-396 1-271 (358)
12 cd06425 M1P_guanylylT_B_like_N 100.0 9.4E-39 2E-43 301.5 26.3 232 93-371 1-233 (233)
13 cd06428 M1P_guanylylT_A_like_N 100.0 1E-38 2.2E-43 305.9 25.6 235 95-370 1-257 (257)
14 TIGR02091 glgC glucose-1-phosp 100.0 1.3E-38 2.7E-43 319.4 26.9 276 95-392 1-287 (361)
15 COG1209 RfbA dTDP-glucose pyro 100.0 2.2E-38 4.7E-43 298.0 24.4 238 93-376 1-241 (286)
16 TIGR02092 glgD glucose-1-phosp 100.0 1.1E-38 2.4E-43 320.9 23.6 273 92-395 2-287 (369)
17 PRK15480 glucose-1-phosphate t 100.0 2.9E-37 6.3E-42 301.6 27.5 237 90-373 1-243 (292)
18 cd02538 G1P_TT_short G1P_TT_sh 100.0 2.8E-37 6E-42 292.7 26.6 232 93-371 1-238 (240)
19 cd02541 UGPase_prokaryotic Pro 100.0 1.9E-37 4.1E-42 298.3 25.4 245 93-371 1-265 (267)
20 TIGR01099 galU UTP-glucose-1-p 100.0 2.5E-37 5.4E-42 296.2 23.1 240 93-366 1-260 (260)
21 TIGR02623 G1P_cyt_trans glucos 100.0 7.8E-37 1.7E-41 293.0 26.3 234 94-374 1-248 (254)
22 TIGR01207 rmlA glucose-1-phosp 100.0 9.4E-37 2E-41 297.3 26.1 232 94-372 1-238 (286)
23 TIGR01208 rmlA_long glucose-1- 100.0 3.5E-36 7.5E-41 301.1 27.6 255 94-395 1-263 (353)
24 PRK13389 UTP--glucose-1-phosph 100.0 4.8E-36 1E-40 294.5 27.1 244 91-371 7-280 (302)
25 cd06422 NTP_transferase_like_1 100.0 2.5E-36 5.4E-41 282.4 23.0 219 94-366 1-221 (221)
26 cd02524 G1P_cytidylyltransfera 100.0 5.7E-36 1.2E-40 286.3 25.6 244 95-374 1-249 (253)
27 cd04189 G1P_TT_long G1P_TT_lon 100.0 2E-35 4.2E-40 278.6 27.2 232 93-372 1-235 (236)
28 cd06915 NTP_transferase_WcbM_l 100.0 5.1E-35 1.1E-39 271.9 24.7 223 95-367 1-223 (223)
29 cd04181 NTP_transferase NTP_tr 100.0 2.6E-34 5.6E-39 266.3 24.3 217 95-358 1-217 (217)
30 COG1210 GalU UDP-glucose pyrop 100.0 1.3E-34 2.9E-39 272.5 19.3 251 90-375 2-274 (291)
31 cd06426 NTP_transferase_like_2 100.0 2E-33 4.3E-38 261.9 24.9 219 95-367 1-220 (220)
32 cd04183 GT2_BcE_like GT2_BcbE_ 100.0 3.4E-31 7.5E-36 249.1 22.5 222 95-363 1-230 (231)
33 cd02523 PC_cytidylyltransferas 100.0 2.8E-31 6.2E-36 249.5 21.1 222 95-367 1-229 (229)
34 cd02508 ADP_Glucose_PP ADP-glu 100.0 2.2E-30 4.8E-35 239.2 20.3 199 95-357 1-200 (200)
35 PRK14355 glmU bifunctional N-a 100.0 5.3E-30 1.2E-34 265.1 25.2 237 90-373 1-245 (459)
36 KOG1460 GDP-mannose pyrophosph 100.0 1.9E-30 4.2E-35 245.1 13.9 242 92-373 2-266 (407)
37 cd04197 eIF-2B_epsilon_N The N 100.0 1.3E-29 2.9E-34 237.0 19.0 207 93-317 1-217 (217)
38 PRK14352 glmU bifunctional N-a 100.0 2.1E-28 4.6E-33 254.8 24.0 239 90-373 2-252 (482)
39 PRK14358 glmU bifunctional N-a 100.0 1.5E-28 3.2E-33 256.0 21.1 234 91-373 6-246 (481)
40 cd02509 GDP-M1P_Guanylyltransf 100.0 3E-28 6.4E-33 236.3 19.4 234 93-362 1-273 (274)
41 cd02540 GT2_GlmU_N_bac N-termi 100.0 1.5E-27 3.3E-32 223.4 23.4 221 95-363 1-229 (229)
42 PRK14356 glmU bifunctional N-a 100.0 9.6E-27 2.1E-31 240.3 25.4 234 92-373 5-246 (456)
43 TIGR01173 glmU UDP-N-acetylglu 100.0 7.4E-27 1.6E-31 240.3 24.4 229 93-372 1-237 (451)
44 PRK09451 glmU bifunctional N-a 100.0 3.2E-27 7E-32 244.1 21.5 227 90-368 3-243 (456)
45 PRK14359 glmU bifunctional N-a 100.0 1.8E-26 3.9E-31 236.4 25.1 231 91-373 1-236 (430)
46 PRK14354 glmU bifunctional N-a 99.9 6.1E-26 1.3E-30 234.4 25.5 232 91-371 1-240 (458)
47 PRK14353 glmU bifunctional N-a 99.9 7.7E-26 1.7E-30 233.0 25.5 234 90-371 3-243 (446)
48 PRK14357 glmU bifunctional N-a 99.9 1.7E-25 3.6E-30 230.6 23.7 223 93-371 1-230 (448)
49 COG1207 GlmU N-acetylglucosami 99.9 1.9E-25 4.2E-30 221.1 22.3 238 92-375 2-247 (460)
50 PRK05450 3-deoxy-manno-octulos 99.9 7.5E-25 1.6E-29 207.9 24.8 234 92-370 2-244 (245)
51 PRK14360 glmU bifunctional N-a 99.9 5.4E-25 1.2E-29 226.9 24.1 231 93-373 2-239 (450)
52 TIGR01479 GMP_PMI mannose-1-ph 99.9 3.2E-25 6.9E-30 229.9 21.7 241 93-368 1-282 (468)
53 cd02507 eIF-2B_gamma_N_like Th 99.9 1.7E-25 3.6E-30 209.5 16.4 204 93-317 1-216 (216)
54 cd02517 CMP-KDO-Synthetase CMP 99.9 1.9E-24 4.2E-29 204.4 23.6 226 93-368 2-238 (239)
55 COG1213 Predicted sugar nucleo 99.9 1.3E-24 2.8E-29 201.6 16.6 223 90-373 1-231 (239)
56 PRK13368 3-deoxy-manno-octulos 99.9 1.5E-22 3.3E-27 191.2 23.7 225 92-369 2-237 (238)
57 cd04198 eIF-2B_gamma_N The N-t 99.9 1.6E-23 3.6E-28 195.6 15.2 201 93-317 1-214 (214)
58 PRK15460 cpsB mannose-1-phosph 99.9 8.3E-21 1.8E-25 196.3 19.1 241 92-367 5-290 (478)
59 COG4750 LicC CTP:phosphocholin 99.8 3.4E-19 7.4E-24 159.7 15.6 220 93-372 1-227 (231)
60 COG0836 {ManC} Mannose-1-phosp 99.8 6.3E-19 1.4E-23 170.0 18.3 245 93-371 2-286 (333)
61 PLN02917 CMP-KDO synthetase 99.8 7.6E-18 1.7E-22 164.9 23.5 235 91-373 46-290 (293)
62 KOG1462 Translation initiation 99.8 1.5E-18 3.2E-23 169.9 13.0 253 90-367 7-306 (433)
63 KOG1461 Translation initiation 99.8 9.6E-17 2.1E-21 165.3 21.9 261 90-374 22-293 (673)
64 PRK00155 ispD 2-C-methyl-D-ery 99.7 3.2E-16 6.8E-21 147.4 18.5 219 90-372 1-224 (227)
65 TIGR00453 ispD 2-C-methyl-D-er 99.7 4.3E-16 9.3E-21 145.3 18.1 210 95-369 2-216 (217)
66 cd02516 CDP-ME_synthetase CDP- 99.7 9.9E-16 2.1E-20 142.6 17.2 213 94-366 2-218 (218)
67 cd02513 CMP-NeuAc_Synthase CMP 99.7 4.7E-15 1E-19 138.2 20.8 218 92-369 1-222 (223)
68 PRK09382 ispDF bifunctional 2- 99.7 5.7E-15 1.2E-19 149.2 20.4 209 90-373 3-215 (378)
69 TIGR00466 kdsB 3-deoxy-D-manno 99.7 2.2E-14 4.7E-19 136.5 22.6 228 95-363 2-237 (238)
70 TIGR03310 matur_ygfJ molybdenu 99.6 6.1E-15 1.3E-19 133.9 16.1 120 95-244 2-123 (188)
71 PRK13385 2-C-methyl-D-erythrit 99.6 1.1E-14 2.4E-19 137.4 18.5 219 92-372 2-225 (230)
72 TIGR00454 conserved hypothetic 99.6 6.1E-15 1.3E-19 134.9 13.2 125 93-249 1-127 (183)
73 PF12804 NTP_transf_3: MobA-li 99.6 1.1E-14 2.4E-19 129.0 11.9 121 95-248 1-123 (160)
74 PRK00317 mobA molybdopterin-gu 99.6 3E-13 6.6E-18 124.0 19.0 115 90-239 1-117 (193)
75 cd02503 MobA MobA catalyzes th 99.5 2.2E-13 4.8E-18 123.3 17.0 113 93-243 1-115 (181)
76 TIGR03584 PseF pseudaminic aci 99.5 9.9E-13 2.1E-17 123.9 21.6 215 95-370 2-220 (222)
77 cd04182 GT_2_like_f GT_2_like_ 99.5 1E-13 2.2E-18 125.0 12.7 121 93-243 1-123 (186)
78 PLN02728 2-C-methyl-D-erythrit 99.5 2.8E-12 6E-17 123.1 21.8 218 90-371 22-245 (252)
79 COG2266 GTP:adenosylcobinamide 99.5 9.1E-13 2E-17 117.5 16.5 110 93-237 1-112 (177)
80 TIGR02665 molyb_mobA molybdopt 99.5 2.4E-12 5.3E-17 116.9 16.7 118 93-243 1-120 (186)
81 COG2068 Uncharacterized MobA-r 99.5 6E-12 1.3E-16 115.1 18.4 191 90-371 3-198 (199)
82 PRK02726 molybdopterin-guanine 99.4 9.7E-12 2.1E-16 115.2 18.0 112 91-237 6-119 (200)
83 COG1212 KdsB CMP-2-keto-3-deox 99.4 1.8E-11 4E-16 113.1 19.2 235 92-372 3-244 (247)
84 PRK00560 molybdopterin-guanine 99.4 1.9E-11 4.2E-16 112.9 18.4 183 89-371 5-192 (196)
85 PRK14489 putative bifunctional 99.4 1.7E-11 3.8E-16 123.8 18.0 121 90-243 3-125 (366)
86 PF01128 IspD: 2-C-methyl-D-er 99.4 9.6E-11 2.1E-15 110.3 21.2 215 93-371 1-220 (221)
87 cd02518 GT2_SpsF SpsF is a gly 99.3 1.2E-10 2.5E-15 110.0 18.2 115 95-244 2-121 (233)
88 PRK14490 putative bifunctional 99.3 2E-10 4.4E-15 116.2 19.4 113 87-235 169-283 (369)
89 TIGR03202 pucB xanthine dehydr 99.3 5.9E-11 1.3E-15 108.6 13.8 124 94-242 2-127 (190)
90 COG0746 MobA Molybdopterin-gua 99.3 2.1E-10 4.5E-15 105.8 16.2 113 90-240 2-116 (192)
91 COG1211 IspD 4-diphosphocytidy 99.2 8.9E-10 1.9E-14 103.8 19.5 222 91-372 3-228 (230)
92 cd04193 UDPGlcNAc_PPase UDPGlc 99.1 2.5E-09 5.4E-14 106.2 18.6 217 91-323 14-257 (323)
93 COG1083 NeuA CMP-N-acetylneura 99.1 2.4E-09 5.2E-14 98.5 15.4 222 90-374 1-226 (228)
94 cd04180 UGPase_euk_like Eukary 99.1 1.3E-08 2.7E-13 98.6 21.0 215 93-322 1-241 (266)
95 PRK14500 putative bifunctional 99.1 4.3E-09 9.4E-14 105.4 17.7 109 92-236 160-270 (346)
96 PTZ00339 UDP-N-acetylglucosami 98.9 6.1E-08 1.3E-12 100.7 19.2 215 92-322 106-351 (482)
97 cd00897 UGPase_euk Eukaryotic 98.4 3.3E-05 7.2E-10 76.0 19.4 215 91-323 2-234 (300)
98 PF01704 UDPGP: UTP--glucose-1 98.3 2.6E-05 5.5E-10 80.2 15.9 262 90-371 54-356 (420)
99 PLN02435 probable UDP-N-acetyl 98.2 5.3E-05 1.2E-09 79.0 17.8 212 91-321 115-363 (493)
100 PLN02474 UTP--glucose-1-phosph 98.2 9.6E-05 2.1E-09 76.6 18.2 267 90-374 77-376 (469)
101 PF02348 CTP_transf_3: Cytidyl 98.2 1.7E-05 3.8E-10 73.6 11.7 177 94-315 1-185 (217)
102 COG1861 SpsF Spore coat polysa 98.2 0.00025 5.4E-09 66.0 18.8 115 93-243 3-124 (241)
103 PRK00576 molybdopterin-guanine 98.1 0.00015 3.2E-09 65.6 15.7 97 113-239 3-103 (178)
104 cd06424 UGGPase UGGPase cataly 98.1 0.00014 3.1E-09 71.9 16.1 216 94-323 2-253 (315)
105 COG4284 UDP-glucose pyrophosph 98.0 0.00028 6E-09 72.5 17.5 213 90-320 103-337 (472)
106 PLN02830 UDP-sugar pyrophospho 97.6 0.0025 5.4E-08 68.5 16.3 219 91-323 127-384 (615)
107 cd00761 Glyco_tranf_GTA_type G 96.0 0.23 5.1E-06 41.1 12.9 99 117-237 2-103 (156)
108 TIGR03552 F420_cofC 2-phospho- 95.5 0.094 2E-06 47.8 9.3 85 124-236 30-116 (195)
109 KOG2388 UDP-N-acetylglucosamin 95.4 0.055 1.2E-06 55.9 8.1 215 91-323 96-339 (477)
110 PRK13412 fkp bifunctional fuco 92.4 0.33 7.2E-06 54.9 7.4 140 215-371 154-312 (974)
111 PF00535 Glycos_transf_2: Glyc 91.3 3.7 8E-05 34.6 11.3 110 118-249 4-116 (169)
112 KOG2638 UDP-glucose pyrophosph 87.6 37 0.00081 35.1 17.3 262 90-371 101-399 (498)
113 cd06434 GT2_HAS Hyaluronan syn 86.9 14 0.00029 33.8 12.5 96 118-237 6-103 (235)
114 cd04179 DPM_DPG-synthase_like 86.5 17 0.00037 31.6 12.5 108 118-247 3-115 (185)
115 TIGR03532 DapD_Ac 2,3,4,5-tetr 86.5 0.2 4.3E-06 47.6 -0.2 36 333-374 31-66 (231)
116 cd02525 Succinoglycan_BP_ExoA 85.7 21 0.00045 32.7 13.1 108 118-248 6-118 (249)
117 PF07959 Fucokinase: L-fucokin 85.0 0.93 2E-05 46.8 3.9 96 213-322 53-158 (414)
118 cd04188 DPG_synthase DPG_synth 83.8 26 0.00057 31.6 12.7 51 192-248 68-119 (211)
119 cd04186 GT_2_like_c Subfamily 81.9 30 0.00065 29.1 12.2 98 118-240 3-103 (166)
120 cd06423 CESA_like CESA_like is 79.3 35 0.00077 28.4 12.2 101 118-239 3-106 (180)
121 PRK10073 putative glycosyl tra 79.1 29 0.00063 34.4 12.0 106 118-246 12-120 (328)
122 PLN02726 dolichyl-phosphate be 78.5 55 0.0012 30.4 13.1 49 192-246 79-128 (243)
123 COG1920 Predicted nucleotidylt 76.9 46 0.00099 30.9 11.3 110 93-243 1-116 (210)
124 cd06427 CESA_like_2 CESA_like_ 75.7 67 0.0015 29.7 13.3 108 118-246 7-119 (241)
125 KOG2978 Dolichol-phosphate man 73.3 57 0.0012 30.3 10.9 103 125-250 19-127 (238)
126 cd02510 pp-GalNAc-T pp-GalNAc- 73.0 67 0.0014 30.9 12.5 104 118-241 4-113 (299)
127 cd06442 DPM1_like DPM1_like re 73.0 71 0.0015 28.7 13.2 107 118-246 3-113 (224)
128 cd04187 DPM1_like_bac Bacteria 68.3 81 0.0017 27.4 11.7 49 192-247 66-115 (181)
129 PRK14583 hmsR N-glycosyltransf 67.9 79 0.0017 32.7 12.4 99 118-238 81-182 (444)
130 cd06438 EpsO_like EpsO protein 66.7 90 0.0019 27.4 12.9 107 117-244 2-113 (183)
131 cd04192 GT_2_like_e Subfamily 66.5 97 0.0021 27.7 12.7 107 117-242 2-113 (229)
132 cd06439 CESA_like_1 CESA_like_ 66.2 1.1E+02 0.0024 28.1 14.7 100 117-240 34-138 (251)
133 cd04195 GT2_AmsE_like GT2_AmsE 66.1 94 0.002 27.4 12.5 99 117-238 3-107 (201)
134 cd04184 GT2_RfbC_Mx_like Myxoc 64.2 1E+02 0.0022 27.1 12.6 104 118-243 7-116 (202)
135 cd06433 GT_2_WfgS_like WfgS an 63.4 99 0.0022 26.7 12.8 101 118-243 4-108 (202)
136 TIGR03469 HonB hopene-associat 60.2 1.9E+02 0.0042 29.1 13.3 106 125-243 53-165 (384)
137 PRK11204 N-glycosyltransferase 58.9 1.8E+02 0.0039 29.5 12.9 92 125-238 67-161 (420)
138 PF13641 Glyco_tranf_2_3: Glyc 58.9 49 0.0011 29.9 8.1 107 117-243 6-118 (228)
139 cd06435 CESA_NdvC_like NdvC_li 58.3 1.3E+02 0.0028 27.4 10.8 99 117-237 3-110 (236)
140 TIGR03472 HpnI hopanoid biosyn 54.5 1.9E+02 0.0041 29.0 12.1 104 117-240 46-155 (373)
141 PF01983 CofC: Guanylyl transf 54.1 21 0.00046 33.6 4.7 104 93-236 1-113 (217)
142 cd02522 GT_2_like_a GT_2_like_ 54.1 1.6E+02 0.0035 26.2 12.3 95 117-240 4-101 (221)
143 TIGR01556 rhamnosyltran L-rham 54.0 2E+02 0.0043 27.2 12.4 90 126-239 9-101 (281)
144 TIGR03111 glyc2_xrt_Gpos1 puta 52.0 2.9E+02 0.0062 28.5 13.5 42 192-239 117-159 (439)
145 PRK10018 putative glycosyl tra 51.8 2.3E+02 0.0051 27.4 13.3 96 119-238 12-112 (279)
146 cd06421 CESA_CelA_like CESA_Ce 51.7 1.8E+02 0.0039 26.1 13.4 99 118-238 7-111 (234)
147 COG1215 Glycosyltransferases, 47.7 2.2E+02 0.0047 28.7 11.4 105 117-241 59-167 (439)
148 cd02520 Glucosylceramide_synth 46.7 2.1E+02 0.0045 25.3 12.1 25 212-236 86-111 (196)
149 PTZ00260 dolichyl-phosphate be 46.5 3.1E+02 0.0067 27.2 12.6 51 192-248 148-202 (333)
150 cd04185 GT_2_like_b Subfamily 45.7 2.1E+02 0.0046 25.1 13.0 100 118-237 3-105 (202)
151 cd04196 GT_2_like_d Subfamily 44.5 2.2E+02 0.0048 25.0 12.2 98 117-235 3-103 (214)
152 PRK11498 bcsA cellulose syntha 44.1 3E+02 0.0065 31.4 12.5 96 118-239 266-367 (852)
153 PRK13915 putative glucosyl-3-p 43.4 3.2E+02 0.0069 26.8 11.4 50 192-247 101-153 (306)
154 cd02511 Beta4Glucosyltransfera 42.4 2.7E+02 0.0059 25.5 12.0 91 118-237 6-97 (229)
155 PRK10714 undecaprenyl phosphat 40.4 3.7E+02 0.0081 26.5 13.2 47 192-245 76-123 (325)
156 COG0381 WecB UDP-N-acetylgluco 39.4 93 0.002 31.9 6.9 83 130-227 22-106 (383)
157 PRK10063 putative glycosyl tra 35.8 3.8E+02 0.0082 25.2 13.3 42 192-239 68-109 (248)
158 TIGR02990 ectoine_eutA ectoine 34.0 3E+02 0.0066 26.2 9.2 96 127-235 108-203 (239)
159 PRK14716 bacteriophage N4 adso 31.8 6.6E+02 0.014 26.8 12.8 46 192-237 135-183 (504)
160 TIGR03030 CelA cellulose synth 29.5 6.9E+02 0.015 27.7 12.4 40 193-238 215-255 (713)
161 cd06913 beta3GnTL1_like Beta 1 27.0 4.6E+02 0.0099 23.4 12.9 105 118-241 3-114 (219)
162 cd06167 LabA_like LabA_like pr 26.8 1.8E+02 0.0038 24.7 5.9 45 201-249 88-132 (149)
163 cd02526 GT2_RfbF_like RfbF is 26.8 4.7E+02 0.01 23.5 12.8 86 125-233 11-97 (237)
164 PRK00923 sirohydrochlorin coba 22.6 99 0.0021 25.9 3.4 24 122-146 44-67 (126)
165 cd06420 GT2_Chondriotin_Pol_N 22.4 4.9E+02 0.011 22.1 12.0 99 118-236 3-104 (182)
166 cd07039 TPP_PYR_POX Pyrimidine 21.6 2.4E+02 0.0053 24.9 5.8 31 128-158 4-34 (164)
167 COG1216 Predicted glycosyltran 20.7 7.6E+02 0.017 23.8 11.4 100 125-246 16-119 (305)
168 PRK05782 bifunctional sirohydr 20.2 1.5E+02 0.0032 29.9 4.5 68 89-158 2-89 (335)
No 1
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=3.9e-58 Score=438.38 Aligned_cols=266 Identities=41% Similarity=0.635 Sum_probs=240.3
Q ss_pred CCCCCCCeeEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCCCCeEEEEccCCchhHHHHHHhhccCCC
Q 015713 86 PQADPKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGN 165 (402)
Q Consensus 86 ~~~~~~~m~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~GI~~IiVv~~~~~~~i~~~l~~~y~~~~ 165 (402)
.+.+ +.|+||||.||.||||+|||.++||||+|+|++ |||+|+|++|+++||++|+++++|+++++++|+.+.|
T Consensus 4 ~~~~-~~vkaiILvGG~GTRLrPLT~t~pKPlVpfgn~-pmI~hqieal~nsGi~~I~la~~y~s~sl~~~~~k~y---- 77 (371)
T KOG1322|consen 4 RPAD-QSVKAIILVGGYGTRLRPLTLTRPKPLVPFGNK-PMILHQIEALINSGITKIVLATQYNSESLNRHLSKAY---- 77 (371)
T ss_pred cccc-cceeEEEEecCCCceeeceeccCCCcccccCcc-hhhHHHHHHHHhCCCcEEEEEEecCcHHHHHHHHHHh----
Confidence 3445 789999999999999999999999999999976 9999999999999999999999999999999999998
Q ss_pred CcccCCCcEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCccCCccHHHHHHHHHhCCCcEEE
Q 015713 166 GVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITV 245 (402)
Q Consensus 166 g~~~~~~~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~di~~~l~~h~~~~aditi 245 (402)
+.++| |++++.+|++ +.|++||++++|+++|.+++ .+|+||+||++|+++|++|+++|+++++++|+
T Consensus 78 ~~~lg---Vei~~s~ete----plgtaGpl~laR~~L~~~~~------~~ffVLnsDvi~~~p~~~~vqfH~~~gae~TI 144 (371)
T KOG1322|consen 78 GKELG---VEILASTETE----PLGTAGPLALARDFLWVFED------APFFVLNSDVICRMPYKEMVQFHRAHGAEITI 144 (371)
T ss_pred hhccc---eEEEEEeccC----CCcccchHHHHHHHhhhcCC------CcEEEecCCeeecCCHHHHHHHHHhcCCceEE
Confidence 34555 8999998876 57999999999999999863 49999999999999999999999999999999
Q ss_pred EEEEcCCCCCCcceEEEECC-CCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEehHHHHHHHHhh
Q 015713 246 SCVPMDDCRASDYGLMKIDR-SGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSS 324 (402)
Q Consensus 246 ~~~~~~~~~~~~~g~v~iD~-~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~~~~l~~ll~~~ 324 (402)
+|.++++ +++||+|++|+ .|+|.+|.|||+ +..+| -.+||+|+|+|++|++++ .
T Consensus 145 ~~t~vde--pSkyGvv~~d~~~grV~~F~EKPk--d~vsn-------------------kinaGiYi~~~~vL~ri~--~ 199 (371)
T KOG1322|consen 145 VVTKVDE--PSKYGVVVIDEDTGRVIRFVEKPK--DLVSN-------------------KINAGIYILNPEVLDRIL--L 199 (371)
T ss_pred EEEeccC--ccccceEEEecCCCceeEehhCch--hhhhc-------------------cccceEEEECHHHHhHhh--h
Confidence 9999987 99999999998 899999999999 44444 345999999999999887 3
Q ss_pred CCCCCchhhccHHhhhcCCcEEEEEEcCeEEecCCHHHHHHHHhHhhcccCCccccccccCCCcccccccccccc
Q 015713 325 YPLSNDFGSEIIPASVKDHNVQAFLFNDYWEDIGTIKSFFMPIWPSQNSLRSLNFMIPRHLSIRLLDSCHPLKLI 399 (402)
Q Consensus 325 ~~~~~d~~~~ii~~li~~~~v~a~~~~g~w~DIgtp~d~~~A~~~ll~~~~~~~~t~~~~~pp~~~~~~~~~~~~ 399 (402)
+|+. +++|++|.+++++++++|.++|||+|||+|+||+.+...+++..+ + .|++|++||+++.+|+++|-+
T Consensus 200 ~ptS--iekEifP~~a~~~~l~a~~l~gfWmDIGqpkdf~~g~~~Yl~s~~-~-~t~~r~~p~~~i~~nvlvd~~ 270 (371)
T KOG1322|consen 200 RPTS--IEKEIFPAMAEEHQLYAFDLPGFWMDIGQPKDFLTGFSFYLRSLP-K-YTSPRLLPGSKIVGNVLVDSI 270 (371)
T ss_pred cccc--hhhhhhhhhhhcCceEEEecCchhhhcCCHHHHHHHHHHHHhhCc-c-cCCccccCCccccccEeeccc
Confidence 4543 889999999999999999999999999999999999888876554 2 299999999999999998754
No 2
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.7e-56 Score=437.54 Aligned_cols=280 Identities=43% Similarity=0.731 Sum_probs=251.6
Q ss_pred CCCeeEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCCCCeEEEEccCCchhHHHHHHhhccCCCCccc
Q 015713 90 PKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNF 169 (402)
Q Consensus 90 ~~~m~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~GI~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~ 169 (402)
++++-|+|||||.|+||.|||+.|+||.||+||+|+|||++++||.++||++|.|+|+|++.+|.+||.+.|+++.+.
T Consensus 3 ~~~~laiILaGg~G~rL~~LT~~RakpAVpFgGkYRiIDF~LSN~vNSGi~~I~VltQy~~~SL~~Hi~~G~~w~l~~-- 80 (393)
T COG0448 3 KKNVLAIILAGGRGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQYKSHSLNDHIGRGWPWDLDR-- 80 (393)
T ss_pred ccceEEEEEcCCCCCccchhhhCccccccccCceeEEEeEEcccccccCCCeEEEEeccchhHHHHHhhCCCcccccc--
Confidence 456889999999999999999999999999999999999999999999999999999999999999999877664332
Q ss_pred CCCcEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCccCCccHHHHHHHHHhCCCcEEEEEEE
Q 015713 170 GDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVP 249 (402)
Q Consensus 170 ~~~~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~di~~~l~~h~~~~aditi~~~~ 249 (402)
..+++.++.+.+. +.+..|++|||+|++|-++++++ ...++++|++|||+|++||.++++.|++++|++|++|.+
T Consensus 81 ~~~~v~ilp~~~~--~~~~~wy~Gtadai~Qnl~~i~~---~~~eyvlIlsgDhIYkmDy~~ml~~H~~~gadiTv~~~~ 155 (393)
T COG0448 81 KNGGVFILPAQQR--EGGERWYEGTADAIYQNLLIIRR---SDPEYVLILSGDHIYKMDYSDMLDFHIESGADVTVAVKE 155 (393)
T ss_pred ccCcEEEeCchhc--cCCCcceeccHHHHHHhHHHHHh---cCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEEE
Confidence 3456899987765 34567999999999999999974 578999999999999999999999999999999999999
Q ss_pred cCCCCCCcceEEEECCCCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEehHHHHHHHHhhCC---
Q 015713 250 MDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYP--- 326 (402)
Q Consensus 250 ~~~~~~~~~g~v~iD~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~~~~l~~ll~~~~~--- 326 (402)
++.+.+++||++.+|++|+|++|.|||..... ...++|||+|+|++++|.++|++...
T Consensus 156 Vp~~eas~fGim~~D~~~~i~~F~eKp~~~~~-------------------~~~laSMgiYIf~~~~L~~~L~~~~~~~~ 216 (393)
T COG0448 156 VPREEASRFGVMNVDENGRIIEFVEKPADGPP-------------------SNSLASMGIYIFNTDLLKELLEEDAKDPN 216 (393)
T ss_pred CChHhhhhcCceEECCCCCEEeeeeccCcCCc-------------------ccceeeeeeEEEcHHHHHHHHHHHhcccC
Confidence 99999999999999999999999999987210 12379999999999999999986543
Q ss_pred CCCchhhccHHhhhcCCcEEEEEEcCeEEecCCHHHHHHHHhHhhcccCCccc--------cccccCCCcccccccc
Q 015713 327 LSNDFGSEIIPASVKDHNVQAFLFNDYWEDIGTIKSFFMPIWPSQNSLRSLNF--------MIPRHLSIRLLDSCHP 395 (402)
Q Consensus 327 ~~~d~~~~ii~~li~~~~v~a~~~~g~w~DIgtp~d~~~A~~~ll~~~~~~~~--------t~~~~~pp~~~~~~~~ 395 (402)
+..||+.++||.++.+++++||+|+|||.||||+++|++||++|++..+.+++ |+.+++||+++.++..
T Consensus 217 ~~~DfgkdiIp~~~~~~~v~AY~f~gYw~dVgTi~syy~aNmdLl~~~~~~~lyd~~w~IyT~~~~~pPak~~~~s~ 293 (393)
T COG0448 217 SSHDFGKDIIPKLLERGKVYAYEFSGYWRDVGTIDSYYEANMDLLSPQPELNLYDRNWPIYTKNKNLPPAKFVNDSE 293 (393)
T ss_pred ccccchHHHHHHHHhcCCEEEEeccchhhhcccHHHHHHhhHHhcCCCCcccccCCCCceeecCCCCCCceEecCce
Confidence 46899999999999999999999999999999999999999999996676664 9999999999998544
No 3
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=100.00 E-value=1.1e-47 Score=394.90 Aligned_cols=306 Identities=69% Similarity=1.156 Sum_probs=258.8
Q ss_pred CCCeeEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCCCCeEEEEccCCchhHHHHHHhhccCCCCccc
Q 015713 90 PKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNF 169 (402)
Q Consensus 90 ~~~m~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~GI~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~ 169 (402)
|++|+|||||||.||||+|||..+||||+||+|+||||+|+|++|.++||++|+|+++++.+++.+|+.+.|.++.+..+
T Consensus 1 ~~~~~aIIlA~G~gtRl~PlT~~~PK~llpv~g~~plId~~L~~l~~~Gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~~~ 80 (436)
T PLN02241 1 PKSVAAIILGGGAGTRLFPLTKRRAKPAVPIGGNYRLIDIPMSNCINSGINKIYVLTQFNSASLNRHLSRAYNFGNGGNF 80 (436)
T ss_pred CCceEEEEEeCCCCCcchhhhcCCcccceEeCCcceEehHHHHHHHhCCCCEEEEEeccCHHHHHHHHhccCCCCCCccc
Confidence 67899999999999999999999999999999988999999999999999999999999999999999876645444444
Q ss_pred CCCcEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCccCCccHHHHHHHHHhCCCcEEEEEEE
Q 015713 170 GDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVP 249 (402)
Q Consensus 170 ~~~~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~di~~~l~~h~~~~aditi~~~~ 249 (402)
+.+.+.++...|.. .+..|++||++|++++++++++..+...++|||++||++++.|+.++++.|.++++++|+++.+
T Consensus 81 ~~~~~~i~~~~q~~--~~~~~~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~v~~~dl~~ll~~h~~~~a~~ti~~~~ 158 (436)
T PLN02241 81 GDGFVEVLAATQTP--GEKGWFQGTADAVRQFLWLFEDAKNKNVEEVLILSGDHLYRMDYMDFVQKHRESGADITIACLP 158 (436)
T ss_pred CCCCEEEcCCcccC--CCCccccCcHHHHHHHHHHHHhcccCCCCEEEEecCCeEEccCHHHHHHHHHHcCCCEEEEEEe
Confidence 44446666655532 1234788999999999988864211125899999999999999999999999999999999998
Q ss_pred cCCCCCCcceEEEECCCCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEehHHHHHHHHhhCCCCC
Q 015713 250 MDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSN 329 (402)
Q Consensus 250 ~~~~~~~~~g~v~iD~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~~~~l~~ll~~~~~~~~ 329 (402)
++.+++++||++.+|++|+|.+|.|||..+.....+++++++++++.+.+..++++++|+|+|++++|..++++..+...
T Consensus 159 v~~~~~~~ygvv~~d~~~~v~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ll~~~~~~~~ 238 (436)
T PLN02241 159 VDESRASDFGLMKIDDTGRIIEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPTAN 238 (436)
T ss_pred cchhhcCcceEEEECCCCCEEEEEECCCCcccccccccccccccccccccccceEEEeEEEEEEHHHHHHHHHhhccccc
Confidence 87666789999999989999999999977666667889999998886555556899999999999999878776655555
Q ss_pred chhhccHHhhhcC-CcEEEEEEcCeEEecCCHHHHHHHHhHhhcccCCccc--------cccccCCCcccccccccc
Q 015713 330 DFGSEIIPASVKD-HNVQAFLFNDYWEDIGTIKSFFMPIWPSQNSLRSLNF--------MIPRHLSIRLLDSCHPLK 397 (402)
Q Consensus 330 d~~~~ii~~li~~-~~v~a~~~~g~w~DIgtp~d~~~A~~~ll~~~~~~~~--------t~~~~~pp~~~~~~~~~~ 397 (402)
+|..++++.++.+ .+|++|.++|||.|||+|++|++|++.++..++...+ |.+++.||+.+..++|.+
T Consensus 239 ~~~~dil~~l~~~g~~v~~~~~~gyw~dIg~~~~y~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~ 315 (436)
T PLN02241 239 DFGSEIIPGAIKEGYNVQAYLFDGYWEDIGTIKSFYEANLALTKQPPKFSFYDPDAPIYTSPRFLPPSKIEDCRITD 315 (436)
T ss_pred chhHHHHHHHhhcCCeEEEEeeCCEEEECCCHHHHHHHHHHHhcCCchhhccCCCCcccccCCCCCCcEecCCeEEE
Confidence 7889999999988 5899999999999999999999999999987653321 667888999998776654
No 4
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=5.4e-44 Score=366.71 Aligned_cols=299 Identities=55% Similarity=0.942 Sum_probs=245.8
Q ss_pred CCCeeEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCCCCeEEEEccCCchhHHHHHHhhccCCCCccc
Q 015713 90 PKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNF 169 (402)
Q Consensus 90 ~~~m~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~GI~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~ 169 (402)
|.+++|||||||.||||+|||..+||||+||+|+||||+|++++|.++|+++|+|+++|+.+++.+|+.+.|.++ .+
T Consensus 1 m~~~~AVILAaG~GtRL~PLT~~~PK~Llpi~gk~plI~~~L~~l~~~Gi~~vivv~~~~~~~i~~~l~~~~~~~---~~ 77 (429)
T PRK02862 1 MKRVLAIILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPISNCINSGINKIYVLTQFNSASLNRHISQTYNFD---GF 77 (429)
T ss_pred CCcEEEEEECCCCCCcchhhhcCCcceeeEECCeeEEeHHHHHHHHHCCCCEEEEEecCCHHHHHHHHhcCcCcc---cc
Confidence 567899999999999999999999999999999989999999999999999999999999999999997654221 11
Q ss_pred CCCcEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCccCCccHHHHHHHHHhCCCcEEEEEEE
Q 015713 170 GDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVP 249 (402)
Q Consensus 170 ~~~~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~di~~~l~~h~~~~aditi~~~~ 249 (402)
..+.+.++...|.. ....|++||++||+++.++++. ...++|+|++||++++.|+.++++.|.+.++++|+++.+
T Consensus 78 ~~g~~~i~~~~~~~--~~~~~~lGTa~al~~a~~~l~~---~~~~~~lVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~ 152 (429)
T PRK02862 78 SGGFVEVLAAQQTP--ENPSWFQGTADAVRKYLWHFQE---WDVDEYLILSGDQLYRMDYRLFVQHHRETGADITLAVLP 152 (429)
T ss_pred CCCEEEEeCCcccC--CCCccccCcHHHHHHHHHHHHh---cCCCEEEEecCCEEEeCCHHHHHHHHHHcCCCEEEEEEe
Confidence 22335555544432 1224568999999999999852 234789999999999999999999999999999999987
Q ss_pred cCCCCCCcceEEEECCCCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEehHHHHHHHHhhCCCCC
Q 015713 250 MDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSN 329 (402)
Q Consensus 250 ~~~~~~~~~g~v~iD~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~~~~l~~ll~~~~~~~~ 329 (402)
.+...+..||++.+|++|+|..|.|||.....+.+.+++++|...+.+.....+++++|+|+|++++|..+++.. +...
T Consensus 153 ~~~~~~~~yG~i~~d~~g~V~~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~l~~~-~~~~ 231 (429)
T PRK02862 153 VDEKDASGFGLMKTDDDGRITEFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLNKN-PEYT 231 (429)
T ss_pred cChhhcccceEEEECCCCcEEEEEECCCccccchhcccccccccccccCCCCceEEEEEEEEEcHHHHHHHHHHC-CChh
Confidence 765557889999999899999999999865555666777777777766666678999999999999998777653 2334
Q ss_pred chhhccHHhhhcCCcEEEEEEcCeEEecCCHHHHHHHHhHhh-cccCCcc--------ccccccCCCcccccccccc
Q 015713 330 DFGSEIIPASVKDHNVQAFLFNDYWEDIGTIKSFFMPIWPSQ-NSLRSLN--------FMIPRHLSIRLLDSCHPLK 397 (402)
Q Consensus 330 d~~~~ii~~li~~~~v~a~~~~g~w~DIgtp~d~~~A~~~ll-~~~~~~~--------~t~~~~~pp~~~~~~~~~~ 397 (402)
++..++++.+++++++++|.++|||.|||||++|++||+.++ ...+..+ .|+.+..||+.+..++|++
T Consensus 232 ~~~~dil~~l~~~~~v~~~~~~g~w~digt~~~y~~an~~l~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~ 308 (429)
T PRK02862 232 DFGKEIIPEAIRDYKVQSYLFDGYWEDIGTIEAFYEANLALTQQPNPPFSFYDEKAPIYTRARYLPPSKLLDATITE 308 (429)
T ss_pred hhHHHHHHHHhccCcEEEEEeCCEEEeCCCHHHHHHHHHHHHcCCCCcccccCCCCceeccCCCCCCccccccEEEe
Confidence 677899999998899999999999999999999999999998 4334322 1778899999887766654
No 5
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=7.1e-43 Score=356.17 Aligned_cols=281 Identities=37% Similarity=0.656 Sum_probs=224.0
Q ss_pred CCCCeeEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCCCCeEEEEccCCchhHHHHHHhhccCCCCcc
Q 015713 89 DPKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVN 168 (402)
Q Consensus 89 ~~~~m~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~GI~~IiVv~~~~~~~i~~~l~~~y~~~~g~~ 168 (402)
.|++|+|||||||.||||+|||..+||||+||+|+||||+|+|++|.++||++|+|+++|+.+++.+|+.+.|++. +.
T Consensus 2 ~~~~~~avILAaG~GtRl~PLT~~~PK~llPv~gk~plI~~~L~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~~~-~~- 79 (407)
T PRK00844 2 AMPKVLAIVLAGGEGKRLMPLTADRAKPAVPFGGSYRLIDFVLSNLVNSGYLRIYVLTQYKSHSLDRHISQTWRLS-GL- 79 (407)
T ss_pred CCCceEEEEECCCCCCccchhhcCCcccceeeCCcceEhHHHHHHHHHCCCCEEEEEeccCHHHHHHHHHhCcCcc-cc-
Confidence 3778999999999999999999999999999999989999999999999999999999999999999997555321 11
Q ss_pred cCCCcEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCccCCccHHHHHHHHHhCCCcEEEEEE
Q 015713 169 FGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCV 248 (402)
Q Consensus 169 ~~~~~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~di~~~l~~h~~~~aditi~~~ 248 (402)
...++......+. .+..|++||++||+++.+++++ ...++|+|++||++++.++.++++.|.++++++|+++.
T Consensus 80 -~~~~~~~~~~~~~---~~~~~~lGta~al~~a~~~i~~---~~~~~~lv~~gD~v~~~dl~~l~~~h~~~~~~~ti~~~ 152 (407)
T PRK00844 80 -LGNYITPVPAQQR---LGKRWYLGSADAIYQSLNLIED---EDPDYVVVFGADHVYRMDPRQMVDFHIESGAGVTVAAI 152 (407)
T ss_pred -CCCeEEECCcccC---CCCCcccCCHHHHHHHHHHHHh---cCCCEEEEecCCEEEcCCHHHHHHHHHhcCCcEEEEEE
Confidence 1111221111111 2345778999999999999863 12356999999999999999999999999999999987
Q ss_pred EcCCCCCCcceEEEECCCCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEehHHHHHHHHhhCC--
Q 015713 249 PMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYP-- 326 (402)
Q Consensus 249 ~~~~~~~~~~g~v~iD~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~~~~l~~ll~~~~~-- 326 (402)
..+.+.+..||++.+|++|+|+.|.|||...... .. ....+++++|+|+|++++|.+++++...
T Consensus 153 ~~~~~~~~~~Gvv~~d~~g~v~~~~eKp~~~~~~--~~------------~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~ 218 (407)
T PRK00844 153 RVPREEASAFGVIEVDPDGRIRGFLEKPADPPGL--PD------------DPDEALASMGNYVFTTDALVDALRRDAADE 218 (407)
T ss_pred ecchHHcccCCEEEECCCCCEEEEEECCCCcccc--cC------------CCCCcEEEeEEEEEeHHHHHHHHHHhhcCC
Confidence 7654457889999999889999999998753210 00 0113689999999999998776664221
Q ss_pred -CCCchhhccHHhhhcCCcEEEEEE------------cCeEEecCCHHHHHHHHhHhhcccCCccc--------cccccC
Q 015713 327 -LSNDFGSEIIPASVKDHNVQAFLF------------NDYWEDIGTIKSFFMPIWPSQNSLRSLNF--------MIPRHL 385 (402)
Q Consensus 327 -~~~d~~~~ii~~li~~~~v~a~~~------------~g~w~DIgtp~d~~~A~~~ll~~~~~~~~--------t~~~~~ 385 (402)
...++..++++.+++++++++|.+ +|||.|||||++|++|++.++++.+.+++ |+.+..
T Consensus 219 ~~~~~~~~dii~~l~~~~~v~~~~~~~~~~~g~n~~~~g~w~Digt~~~y~~a~~~lL~~~~~~~~~~~~~~~~~~~~~~ 298 (407)
T PRK00844 219 DSSHDMGGDIIPRLVERGRAYVYDFSTNEVPGATERDRGYWRDVGTIDAYYDAHMDLLSVHPVFNLYNREWPIYTSSPNL 298 (407)
T ss_pred cccccchhhHHHHHhccCeEEEEEcccccccccccCCCCEEEECCCHHHHHHHHHHHhCCCCccccCCCCCcccccCCCC
Confidence 234667899999999999999976 59999999999999999999987655432 677788
Q ss_pred CCccccc
Q 015713 386 SIRLLDS 392 (402)
Q Consensus 386 pp~~~~~ 392 (402)
||+.+..
T Consensus 299 ~~~~~~~ 305 (407)
T PRK00844 299 PPAKFVD 305 (407)
T ss_pred CCceEec
Confidence 9998854
No 6
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=7.1e-42 Score=345.29 Aligned_cols=278 Identities=37% Similarity=0.645 Sum_probs=221.1
Q ss_pred CCCeeEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCCCCeEEEEccCCchhHHHHHHhhccCCCCccc
Q 015713 90 PKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNF 169 (402)
Q Consensus 90 ~~~m~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~GI~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~ 169 (402)
|++|+|||||||.||||+|||..+||||+||+|+||||+|++++|.++||++|+|+++|+.+++.+|+.+...++-...
T Consensus 1 ~~~m~avILAaG~GtRl~plT~~~PK~llpv~gk~pli~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~- 79 (380)
T PRK05293 1 KKEMLAMILAGGQGTRLGKLTKNIAKPAVPFGGKYRIIDFTLSNCANSGIDTVGVLTQYQPLELNNHIGIGSPWDLDRI- 79 (380)
T ss_pred CCcEEEEEECCCCCcccchhhcCCccceeeeCCceeehhHHHHHHHhCCCCEEEEEecCCHHHHHHHHhCCCcccccCC-
Confidence 6789999999999999999999999999999999889999999999999999999999999999999853211111111
Q ss_pred CCCcEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCccCCccHHHHHHHHHhCCCcEEEEEEE
Q 015713 170 GDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVP 249 (402)
Q Consensus 170 ~~~~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~di~~~l~~h~~~~aditi~~~~ 249 (402)
...+.++...+.. ..++|+.||++||+++.+++.. ...++|||++||++++.++.++++.|.+.++++|+++..
T Consensus 80 -~~~~~i~~~~~~~--~~~~~~~Gta~al~~a~~~l~~---~~~~~~lV~~gD~l~~~d~~~ll~~h~~~~~~~tl~~~~ 153 (380)
T PRK05293 80 -NGGVTILPPYSES--EGGKWYKGTAHAIYQNIDYIDQ---YDPEYVLILSGDHIYKMDYDKMLDYHKEKEADVTIAVIE 153 (380)
T ss_pred -CCCEEEeCCcccC--CCCcccCCcHHHHHHHHHHHHh---CCCCEEEEecCCEEEcCCHHHHHHHHHhcCCCEEEEEEE
Confidence 1125554222211 2235788999999999999852 124789999999999999999999999999999988877
Q ss_pred cCCCCCCcceEEEECCCCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEehHHHHHHHHhhCC---
Q 015713 250 MDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYP--- 326 (402)
Q Consensus 250 ~~~~~~~~~g~v~iD~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~~~~l~~ll~~~~~--- 326 (402)
.+.+.+..||++.+|++|+|.+|.|||..+. ..++++|+|+|++++|..+++....
T Consensus 154 ~~~~~~~~yG~v~~d~~g~V~~~~eKp~~~~---------------------~~~~~~Giyi~~~~~l~~~l~~~~~~~~ 212 (380)
T PRK05293 154 VPWEEASRFGIMNTDENMRIVEFEEKPKNPK---------------------SNLASMGIYIFNWKRLKEYLIEDEKNPN 212 (380)
T ss_pred cchhhccccCEEEECCCCcEEEEEeCCCCCC---------------------cceeeeEEEEEcHHHHHHHHHHHhhcCC
Confidence 6544578899999998899999999986432 3578999999999998777664321
Q ss_pred CCCchhhccHHhhhcC-CcEEEEEEcCeEEecCCHHHHHHHHhHhhcccCCccc--------cccccCCCccccc-ccc
Q 015713 327 LSNDFGSEIIPASVKD-HNVQAFLFNDYWEDIGTIKSFFMPIWPSQNSLRSLNF--------MIPRHLSIRLLDS-CHP 395 (402)
Q Consensus 327 ~~~d~~~~ii~~li~~-~~v~a~~~~g~w~DIgtp~d~~~A~~~ll~~~~~~~~--------t~~~~~pp~~~~~-~~~ 395 (402)
...+|..++++.++++ .++++|.++|||.||||+++|++|++.++...+...+ +.+...+|+++.. ++|
T Consensus 213 ~~~~~~~d~i~~l~~~~~~v~~~~~~g~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i 291 (380)
T PRK05293 213 SSHDFGKNVIPLYLEEGEKLYAYPFKGYWKDVGTIESLWEANMELLRPENPLNLFDRNWRIYSVNPNLPPQYIAENAKV 291 (380)
T ss_pred chhhhHHHHHHHHhhcCCeEEEEEeCCEEEeCCCHHHHHHHHHHHcCCCchhhhcCCCCceecCCcCCCCCEECCCCEE
Confidence 2346778999999976 5799999999999999999999999999976654321 5666677777744 444
No 7
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=1.5e-41 Score=348.21 Aligned_cols=281 Identities=38% Similarity=0.675 Sum_probs=227.2
Q ss_pred CCCeeEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCCCCeEEEEccCCchhHHHHHHhhccCCCCccc
Q 015713 90 PKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNF 169 (402)
Q Consensus 90 ~~~m~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~GI~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~ 169 (402)
+++++|||||||.||||+|||..+||||+||+|+||||+|++++|.++|+++|+|+++|+.+++.+|+.+.|++.. .+
T Consensus 13 ~~~~~aVILAaG~GtRl~pLT~~~PK~llpv~gkp~lI~~~l~~l~~~Gi~~i~vv~~~~~~~i~~~~~~~~~~~~-~~- 90 (425)
T PRK00725 13 TRDTLALILAGGRGSRLKELTDKRAKPAVYFGGKFRIIDFALSNCINSGIRRIGVLTQYKAHSLIRHIQRGWSFFR-EE- 90 (425)
T ss_pred hcceEEEEECCCCCCcchhhhCCCcceeEEECCEEEEhHHHHHHHHHCCCCeEEEEecCCHHHHHHHHHhhhcccc-cC-
Confidence 4679999999999999999999999999999999559999999999999999999999999999999976553211 01
Q ss_pred CCCcEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCccCCccHHHHHHHHHhCCCcEEEEEEE
Q 015713 170 GDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVP 249 (402)
Q Consensus 170 ~~~~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~di~~~l~~h~~~~aditi~~~~ 249 (402)
...++.++...|.. ..++|++||++|+++++++++. ...++|+|++||++++.++.++++.|.++++++|+++.+
T Consensus 91 ~~~~i~i~~~~~~~--~~e~~~lGTa~al~~a~~~l~~---~~~d~~lVl~gD~l~~~dl~~ll~~h~~~~~~~tl~~~~ 165 (425)
T PRK00725 91 LGEFVDLLPAQQRV--DEENWYRGTADAVYQNLDIIRR---YDPKYVVILAGDHIYKMDYSRMLADHVESGADCTVACLE 165 (425)
T ss_pred CCCeEEEeCCcccC--CCCccccCcHHHHHHHHHHHHh---cCCCEEEEecCCeEeccCHHHHHHHHHHcCCCEEEEEEe
Confidence 12235555544432 1235678999999999999862 234789999999999999999999999999999999887
Q ss_pred cCCCCCCcceEEEECCCCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEehHHHHHHHHhhC---C
Q 015713 250 MDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSY---P 326 (402)
Q Consensus 250 ~~~~~~~~~g~v~iD~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~~~~l~~ll~~~~---~ 326 (402)
++...+..||++.+|++|+|+.|.|||..+.. ++ .....+++++|+|+|++++|..+|++.. .
T Consensus 166 ~~~~~~~~yG~v~~d~~~~V~~~~EKp~~~~~--~~------------~~~~~~l~n~GIYi~~~~~L~~~L~~~~~~~~ 231 (425)
T PRK00725 166 VPREEASAFGVMAVDENDRITAFVEKPANPPA--MP------------GDPDKSLASMGIYVFNADYLYELLEEDAEDPN 231 (425)
T ss_pred cchhhcccceEEEECCCCCEEEEEECCCCccc--cc------------cCccceEEEeeEEEEeHHHHHHHHHHhhcCCC
Confidence 75445789999999988999999999864320 00 0012468999999999999877766532 1
Q ss_pred CCCchhhccHHhhhcCCcEEEEEEc-----------CeEEecCCHHHHHHHHhHhhcccCCccc--------cccccCCC
Q 015713 327 LSNDFGSEIIPASVKDHNVQAFLFN-----------DYWEDIGTIKSFFMPIWPSQNSLRSLNF--------MIPRHLSI 387 (402)
Q Consensus 327 ~~~d~~~~ii~~li~~~~v~a~~~~-----------g~w~DIgtp~d~~~A~~~ll~~~~~~~~--------t~~~~~pp 387 (402)
...+|..++++.+++++++++|.++ +||.|||||++|++|++.++...+..++ |+.++.||
T Consensus 232 ~~~~~~~dii~~l~~~~~v~~~~~~g~~~~~~~~~~gyw~digt~~~y~~an~~ll~~~~~~~~~~~~~~i~t~~~~~~~ 311 (425)
T PRK00725 232 SSHDFGKDIIPKIVEEGKVYAHPFSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLASVTPELDLYDRNWPIWTYQEQLPP 311 (425)
T ss_pred ccchhhHHHHHHHhccCcEEEEEecCCccccccccCCeEEECCCHHHHHHHHHHHcCCCchhhccCCCCccccCCCCCCC
Confidence 2456778999999999999999986 5999999999999999999976654332 67888999
Q ss_pred cccc
Q 015713 388 RLLD 391 (402)
Q Consensus 388 ~~~~ 391 (402)
+.|.
T Consensus 312 ~~~~ 315 (425)
T PRK00725 312 AKFV 315 (425)
T ss_pred CeEe
Confidence 9884
No 8
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=100.00 E-value=3.6e-40 Score=322.74 Aligned_cols=244 Identities=20% Similarity=0.308 Sum_probs=193.4
Q ss_pred CCCeeEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCCCCeEEEEccCCchhHHHHHHhhccC------
Q 015713 90 PKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNL------ 163 (402)
Q Consensus 90 ~~~m~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~GI~~IiVv~~~~~~~i~~~l~~~y~~------ 163 (402)
|.+|+|||||||.||||+|+|..+||||+||+|+ |||+|+++++.++||++|+|+++|..+++.+|+...|.+
T Consensus 1 ~~~mkavILAaG~GTRL~PlT~~~PKpLvpV~gk-PiI~~vl~~l~~~Gi~~ivivv~~~~~~i~~~~~~~~~~~~~~~~ 79 (297)
T TIGR01105 1 MTNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDK-PMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQ 79 (297)
T ss_pred CCceEEEEECCCCCcccCcccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEecCChHHHHHHHhchHHHHHHHHH
Confidence 5579999999999999999999999999999999 999999999999999999999999999999999643311
Q ss_pred ----------CCCcccCCCcEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCccCC-------
Q 015713 164 ----------GNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYR------- 226 (402)
Q Consensus 164 ----------~~g~~~~~~~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~------- 226 (402)
.++..++ +.+....|. +++||++||+++..+++ .++|+|++||++++
T Consensus 80 ~~~~~~~~~~~~~~~~~---~~i~~~~q~-------~~lGtg~Av~~a~~~l~------~~~flvv~gD~l~~~~~~~~~ 143 (297)
T TIGR01105 80 RVKRQLLAEVQSICPPG---VTIMNVRQA-------QPLGLGHSILCARPVVG------DNPFVVVLPDIIIDDATADPL 143 (297)
T ss_pred hcchhhhhhhhhcCCCC---ceEEEeeCC-------CcCchHHHHHHHHHHhC------CCCEEEEECCeeccccccccc
Confidence 1111122 233333332 35799999999999884 37899999999987
Q ss_pred -ccHHHHHHHHHhCCCcEEEEEEEcCCCCCCcceEEEE----CCCCc---EEEEEecCCCCCCCCcccccccccCCCCCC
Q 015713 227 -MDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKI----DRSGQ---IIQFAEKPKGPDLKGMQCDTTLLGLSMPDA 298 (402)
Q Consensus 227 -~di~~~l~~h~~~~aditi~~~~~~~~~~~~~g~v~i----D~~g~---V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a 298 (402)
.++.++++.|.++++.+ +++.++.+ .++.||++.+ |++|+ |.+|.|||..+..
T Consensus 144 ~~~l~~li~~~~~~~~~~-~~~~~~~~-~~~~yGvv~~~~~~d~~g~v~~I~~~~EKP~~~~~----------------- 204 (297)
T TIGR01105 144 RYNLAAMIARFNETGRSQ-VLAKRMPG-DLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQT----------------- 204 (297)
T ss_pred hhHHHHHHHHHHHhCCcE-EEEEEcCC-CCccceEEEecccccCCCCeeeEeEEEECCCCccc-----------------
Confidence 48899999998777766 44455432 3789999998 44564 5899999864321
Q ss_pred CCCCceeeeeEEEEehHHHHHHHHhhCCC--CCchhhccHHhhhcCCcEEEEEEcCeEEecCCHHHHHHHHhHhh
Q 015713 299 VKFPYIASMGVYLFRTDVLLNLLRSSYPL--SNDFGSEIIPASVKDHNVQAFLFNDYWEDIGTIKSFFMPIWPSQ 371 (402)
Q Consensus 299 ~~~~~~~~~Giyvf~~~~l~~ll~~~~~~--~~d~~~~ii~~li~~~~v~a~~~~g~w~DIgtp~d~~~A~~~ll 371 (402)
..+.++++|+|+|++++|.. ++...+. ....++++++.+++++++++|.++|+|+|||||++|.+|+.++.
T Consensus 205 -~~s~~~~~GiYi~~~~i~~~-l~~~~~~~~ge~~ltd~i~~l~~~~~v~~~~~~g~w~DiG~p~~~~~a~~~~~ 277 (297)
T TIGR01105 205 -LDSDLMAVGRYVLSADIWAE-LERTEPGAWGRIQLTDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKYG 277 (297)
T ss_pred -CCcCEEEEEEEEECHHHHHH-HhcCCCCCCCeeeHHHHHHHHHhcCCEEEEEeccEEECCCCHHHHHHHHHHHH
Confidence 01468999999999999874 4443222 22346799999999999999999999999999999999999875
No 9
>PRK10122 GalU regulator GalF; Provisional
Probab=100.00 E-value=6.6e-40 Score=321.14 Aligned_cols=246 Identities=20% Similarity=0.294 Sum_probs=196.3
Q ss_pred CCCeeEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCCCCeEEEEccCCchhHHHHHHhhccCC-----
Q 015713 90 PKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLG----- 164 (402)
Q Consensus 90 ~~~m~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~GI~~IiVv~~~~~~~i~~~l~~~y~~~----- 164 (402)
|++|+|||||||.||||+|+|..+||||+||+|+ |||+|+++++.++||++|+|++++..+++.+|+...|++.
T Consensus 1 ~~~mkavIlAaG~GtRl~PlT~~~PK~llpi~gk-piI~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~l~~~~~~ 79 (297)
T PRK10122 1 MTNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDK-PMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQ 79 (297)
T ss_pred CCceEEEEECCcCCcccCcccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEcCCChHHHHHHHhcchhHHHHHhh
Confidence 5789999999999999999999999999999999 9999999999999999999999999999999996443221
Q ss_pred -----------CCcccCCCcEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCccCC-------
Q 015713 165 -----------NGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYR------- 226 (402)
Q Consensus 165 -----------~g~~~~~~~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~------- 226 (402)
....++ +.+....|.. +.||++|++++..++. .++|+|++||++++
T Consensus 80 ~~k~~~l~~~~~~~~~~---~~i~~~~q~~-------~lGtg~al~~a~~~l~------~~~fvvi~gD~l~~~~~~~~~ 143 (297)
T PRK10122 80 RVKRQLLAEVQSICPPG---VTIMNVRQGQ-------PLGLGHSILCARPAIG------DNPFVVVLPDVVIDDASADPL 143 (297)
T ss_pred cchhhhHHhhhhccCCC---ceEEEeecCC-------cCchHHHHHHHHHHcC------CCCEEEEECCeeccCcccccc
Confidence 000112 2333333422 3699999999999883 37899999999986
Q ss_pred -ccHHHHHHHHHhCCCcEEEEEEEcCCCCCCcceEEEEC----CCC---cEEEEEecCCCCCCCCcccccccccCCCCCC
Q 015713 227 -MDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKID----RSG---QIIQFAEKPKGPDLKGMQCDTTLLGLSMPDA 298 (402)
Q Consensus 227 -~di~~~l~~h~~~~aditi~~~~~~~~~~~~~g~v~iD----~~g---~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a 298 (402)
.|+.++++.|.+.+++++ ++....+ ....||+|.+| ++| +|++|.|||..+..
T Consensus 144 ~~dl~~li~~h~~~~~~~~-~~~~~~~-~~~~yGvv~~d~~~~~~g~v~~I~~~~EKp~~~~~----------------- 204 (297)
T PRK10122 144 RYNLAAMIARFNETGRSQV-LAKRMPG-DLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQT----------------- 204 (297)
T ss_pred chhHHHHHHHHHHhCCcEE-EEEECCC-CCCCceEEEecCcccCCCCeeeEEEEEECCCCccc-----------------
Confidence 479999999998887754 4444432 47899999996 356 78999999964321
Q ss_pred CCCCceeeeeEEEEehHHHHHHHHhhCCC--CCchhhccHHhhhcCCcEEEEEEcCeEEecCCHHHHHHHHhHh-hcc
Q 015713 299 VKFPYIASMGVYLFRTDVLLNLLRSSYPL--SNDFGSEIIPASVKDHNVQAFLFNDYWEDIGTIKSFFMPIWPS-QNS 373 (402)
Q Consensus 299 ~~~~~~~~~Giyvf~~~~l~~ll~~~~~~--~~d~~~~ii~~li~~~~v~a~~~~g~w~DIgtp~d~~~A~~~l-l~~ 373 (402)
..+.++++|+|+|++++|..+.+ ..+. ...++.++++.+++++++.+|.++|+|+|||+|++|.+|+.++ +.+
T Consensus 205 -~~s~~~~~GiYi~~~~i~~~l~~-~~~~~~~e~~ltd~i~~l~~~~~v~~~~~~G~w~DiG~p~~~~~a~~~~~~~~ 280 (297)
T PRK10122 205 -LDSDLMAVGRYVLSADIWPELER-TEPGAWGRIQLTDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKYGLRN 280 (297)
T ss_pred -CCccEEEEEEEEECHHHHHHHHh-CCCCCCCeeeHHHHHHHHHhCCCEEEEEeCCEEEcCCCHHHHHHHHHHHHhcC
Confidence 01367999999999999886543 2222 2345679999999999999999999999999999999999998 444
No 10
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=100.00 E-value=2e-40 Score=314.28 Aligned_cols=241 Identities=34% Similarity=0.611 Sum_probs=194.3
Q ss_pred eEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCCCCe-EEEEccCCchhHHHHHHhhccCCCCcccCCC
Q 015713 94 AAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNK-IFIMTQFNSFSLNRHLARSYNLGNGVNFGDG 172 (402)
Q Consensus 94 ~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~GI~~-IiVv~~~~~~~i~~~l~~~y~~~~g~~~~~~ 172 (402)
||||||||.||||+|+|..+||||+|++|+||||+|+|++|.++|+++ |+|+++++.+++.+|+...+ +++.
T Consensus 1 kavIla~G~GtRl~plt~~~pK~ll~i~g~~pli~~~l~~l~~~g~~~ii~V~~~~~~~~i~~~~~~~~------~~~~- 73 (248)
T PF00483_consen 1 KAVILAGGKGTRLRPLTDTIPKPLLPIGGKYPLIDYVLENLANAGIKEIIVVVNGYKEEQIEEHLGSGY------KFGV- 73 (248)
T ss_dssp EEEEEEESCCGGGTTTTTTSSGGGSEETTEEEHHHHHHHHHHHTTCSEEEEEEETTTHHHHHHHHTTSG------GGTE-
T ss_pred CEEEECCCCCccCchhhhccccccceecCCCcchhhhhhhhcccCCceEEEEEeecccccccccccccc------cccc-
Confidence 699999999999999999999999999999999999999999999999 55556688888998886433 2221
Q ss_pred cEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCccCCccHHHHHHHHHhCCCcEEEEEEEcCC
Q 015713 173 FVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDD 252 (402)
Q Consensus 173 ~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~di~~~l~~h~~~~aditi~~~~~~~ 252 (402)
.+.++. |.. ..||++||+++..++++. ...++|+|++||++++.++.++++.|.++++++++++...+.
T Consensus 74 ~i~~i~--~~~-------~~Gta~al~~a~~~i~~~--~~~~~~lv~~gD~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 142 (248)
T PF00483_consen 74 KIEYIV--QPE-------PLGTAGALLQALDFIEEE--DDDEDFLVLNGDIIFDDDLQDMLEFHRESNADGTVTLLVVPV 142 (248)
T ss_dssp EEEEEE--ESS-------SSCHHHHHHHTHHHHTTS--EE-SEEEEETTEEEESTTHHHHHHHHHHHSSCESEEEEEEES
T ss_pred cceeee--ccc-------ccchhHHHHHHHHHhhhc--cccceEEEEeccccccchhhhHHHhhhccccccccccccccc
Confidence 134433 322 249999999999998630 002459999999999999999999999998855444444334
Q ss_pred CCCCcceEEEECCCCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEehHHHHHHHH--hhCCCCCc
Q 015713 253 CRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLR--SSYPLSND 330 (402)
Q Consensus 253 ~~~~~~g~v~iD~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~~~~l~~ll~--~~~~~~~d 330 (402)
+.++.||++.+|++|+|++|.|||..+.. +.++++|+|+|++++|..+++ .......+
T Consensus 143 ~~~~~~g~v~~d~~~~V~~~~EKP~~~~~--------------------~~~~~~G~Y~~~~~~~~~~~~~~~~~~~~~~ 202 (248)
T PF00483_consen 143 EDPSRYGVVEVDEDGRVIRIVEKPDNPNA--------------------SNLINTGIYIFKPEIFDFLLEMIKENARGED 202 (248)
T ss_dssp SGGGGSEEEEEETTSEEEEEEESCSSHSH--------------------SSEEEEEEEEEETHHHHHHHHHHHTCTTSSH
T ss_pred cccccceeeeeccceeEEEEeccCccccc--------------------ceeccCceEEEcchHHHHHhhhhhccchhhh
Confidence 45899999999998999999999986531 368999999999999987755 22334567
Q ss_pred hhhccHHhhhcCCc-EEEEEEcC--eEEecCCHHHHHHHHhHhhc
Q 015713 331 FGSEIIPASVKDHN-VQAFLFND--YWEDIGTIKSFFMPIWPSQN 372 (402)
Q Consensus 331 ~~~~ii~~li~~~~-v~a~~~~g--~w~DIgtp~d~~~A~~~ll~ 372 (402)
++.++++.+++++. +.++.+++ +|.|||||++|++|++.+++
T Consensus 203 ~l~d~i~~~~~~~~~~~~~~~~~~~~w~dig~~~~~~~a~~~~~~ 247 (248)
T PF00483_consen 203 FLTDAIPKLLEQGKKVYAFIFEGNAYWIDIGTPEDYLEANMDLLN 247 (248)
T ss_dssp HHHHHHHHHHHTTCEEEEEEHSSEE-EEETSSHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCceEEEEecCCeEEEECCCHHHHHHHHHHHhc
Confidence 88999999999975 56778888 79999999999999999885
No 11
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.5e-39 Score=322.11 Aligned_cols=258 Identities=25% Similarity=0.430 Sum_probs=210.7
Q ss_pred CeeEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCCCCeEEEEccCCchhHHHHHHhhccCCCCcccCC
Q 015713 92 NVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGD 171 (402)
Q Consensus 92 ~m~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~GI~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~~ 171 (402)
.|+|||||||.||||+|||..+||||+||+|+ |||+|+|+.|..+|+++|+|+++|..+++.+|+...+ .++.
T Consensus 1 ~mkavILagG~GtRLrPlT~~~PKPllpI~gk-Pii~~~l~~L~~~Gv~eivi~~~y~~~~i~~~~~d~~------~~~~ 73 (358)
T COG1208 1 PMKAVILAGGYGTRLRPLTDDRPKPLLPIAGK-PLIEYVLEALAAAGVEEIVLVVGYLGEQIEEYFGDGE------GLGV 73 (358)
T ss_pred CceEEEEeCCccccccccccCCCcccceeCCc-cHHHHHHHHHHHCCCcEEEEEeccchHHHHHHHhccc------ccCC
Confidence 48999999999999999999999999999999 9999999999999999999999999999999886432 2222
Q ss_pred CcEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCccCCccHHHHHHHHHhCCCcEEEEEEEcC
Q 015713 172 GFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMD 251 (402)
Q Consensus 172 ~~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~di~~~l~~h~~~~aditi~~~~~~ 251 (402)
.|.++.+.. ++||+++|+++..++. .++|++++||++++.|+.+++++|+++.+..++....++
T Consensus 74 -~I~y~~e~~---------~lGTag~l~~a~~~l~------~~~f~v~~GDv~~~~dl~~l~~~~~~~~~~~~~~~~~~~ 137 (358)
T COG1208 74 -RITYVVEKE---------PLGTAGALKNALDLLG------GDDFLVLNGDVLTDLDLSELLEFHKKKGALATIALTRVL 137 (358)
T ss_pred -ceEEEecCC---------cCccHHHHHHHHHhcC------CCcEEEEECCeeeccCHHHHHHHHHhccCccEEEEEecC
Confidence 255554332 3699999999998884 389999999999999999999999999888888888887
Q ss_pred CCCCCcceEEEECCC-CcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEehHHHHHHHHhhCCCCCc
Q 015713 252 DCRASDYGLMKIDRS-GQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSND 330 (402)
Q Consensus 252 ~~~~~~~g~v~iD~~-g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~~~~l~~ll~~~~~~~~d 330 (402)
+ ++.||++..+++ ++|.+|.|||..... .+.++++|+|+|++++|. +... ....+
T Consensus 138 ~--~~~~Gvv~~~~~~~~v~~f~ekp~~~~~-------------------~~~~in~Giyi~~~~v~~-~i~~--~~~~~ 193 (358)
T COG1208 138 D--PSEFGVVETDDGDGRVVEFREKPGPEEP-------------------PSNLINAGIYIFDPEVFD-YIEK--GERFD 193 (358)
T ss_pred C--CCcCceEEecCCCceEEEEEecCCCCCC-------------------CCceEEeEEEEECHHHhh-hccc--CCccc
Confidence 6 388999998844 599999999954211 247999999999999998 3222 23456
Q ss_pred hhhccHHhhhcCCc-EEEEEEcCeEEecCCHHHHHHHHhHhhcccCCccc-cc---------cccCCCccccc-cccc
Q 015713 331 FGSEIIPASVKDHN-VQAFLFNDYWEDIGTIKSFFMPIWPSQNSLRSLNF-MI---------PRHLSIRLLDS-CHPL 396 (402)
Q Consensus 331 ~~~~ii~~li~~~~-v~a~~~~g~w~DIgtp~d~~~A~~~ll~~~~~~~~-t~---------~~~~pp~~~~~-~~~~ 396 (402)
+..+++|.+++++. +++|.++|||+|||||+||.+|++.+++....... .. ....+|.++.. |+|.
T Consensus 194 ~~~~~~~~l~~~~~~v~~~~~~g~W~dig~p~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gp~~ig~~~~i~ 271 (358)
T COG1208 194 FEEELLPALAAKGEDVYGYVFEGYWLDIGTPEDLLEANELLLRGDGKSPLGPIEEPVVIIRSAYIIGPVVIGPGAKIG 271 (358)
T ss_pred chhhHHHHHHhCCCcEEEEEeCCeEEeCCCHHHHHHHHHHHHhcccccccccccccccccccceEeCCEEECCCCEEC
Confidence 66789999999997 99999999999999999999999999975543332 11 34566666555 4443
No 12
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=100.00 E-value=9.4e-39 Score=301.51 Aligned_cols=232 Identities=26% Similarity=0.402 Sum_probs=195.4
Q ss_pred eeEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCCCCeEEEEccCCchhHHHHHHhhccCCCCcccCCC
Q 015713 93 VAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDG 172 (402)
Q Consensus 93 m~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~GI~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~~~ 172 (402)
|++||||||.||||+|+|..+||||+|++|+ |||+|+++++.++|+++|+|+++++.+++.+|+.. + . ..++
T Consensus 1 m~~iIlAaG~g~R~~~lt~~~pK~llpv~g~-pli~~~l~~l~~~g~~~v~iv~~~~~~~~~~~l~~-~--~--~~~~-- 72 (233)
T cd06425 1 MKALILVGGYGTRLRPLTLTVPKPLVEFCNK-PMIEHQIEALAKAGVKEIILAVNYRPEDMVPFLKE-Y--E--KKLG-- 72 (233)
T ss_pred CcEEEecCCCccccCccccCCCCccCeECCc-chHHHHHHHHHHCCCcEEEEEeeeCHHHHHHHHhc-c--c--ccCC--
Confidence 7899999999999999999999999999999 99999999999999999999999999999999863 2 0 0122
Q ss_pred cEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCccCCccHHHHHHHHHhCCCcEEEEEEEcCC
Q 015713 173 FVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDD 252 (402)
Q Consensus 173 ~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~di~~~l~~h~~~~aditi~~~~~~~ 252 (402)
+.++...+. ...||+++++++..+++. ..++|+|++||++++.++.++++.|.++++++++++.+.++
T Consensus 73 -~~i~~~~~~-------~~~G~~~al~~a~~~~~~----~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (233)
T cd06425 73 -IKITFSIET-------EPLGTAGPLALARDLLGD----DDEPFFVLNSDVICDFPLAELLDFHKKHGAEGTILVTKVED 140 (233)
T ss_pred -eEEEeccCC-------CCCccHHHHHHHHHHhcc----CCCCEEEEeCCEeeCCCHHHHHHHHHHcCCCEEEEEEEcCC
Confidence 344433222 136999999999988851 24789999999999999999999999999999999998764
Q ss_pred CCCCcceEEEECC-CCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEehHHHHHHHHhhCCCCCch
Q 015713 253 CRASDYGLMKIDR-SGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDF 331 (402)
Q Consensus 253 ~~~~~~g~v~iD~-~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~~~~l~~ll~~~~~~~~d~ 331 (402)
+..||++.+|+ +|+|+++.|||.... +.++++|+|+|++++|..+... ..+.
T Consensus 141 --~~~~g~v~~d~~~~~v~~~~ekp~~~~---------------------~~~~~~Giyi~~~~~l~~l~~~----~~~~ 193 (233)
T cd06425 141 --PSKYGVVVHDENTGRIERFVEKPKVFV---------------------GNKINAGIYILNPSVLDRIPLR----PTSI 193 (233)
T ss_pred --ccccCeEEEcCCCCEEEEEEECCCCCC---------------------CCEEEEEEEEECHHHHHhcccC----cccc
Confidence 57899999987 789999999987532 3578999999999999755331 2234
Q ss_pred hhccHHhhhcCCcEEEEEEcCeEEecCCHHHHHHHHhHhh
Q 015713 332 GSEIIPASVKDHNVQAFLFNDYWEDIGTIKSFFMPIWPSQ 371 (402)
Q Consensus 332 ~~~ii~~li~~~~v~a~~~~g~w~DIgtp~d~~~A~~~ll 371 (402)
..++++.++++++|.+|.++|+|.|||||++|++|++.+|
T Consensus 194 ~~~~~~~l~~~~~v~~~~~~g~w~digt~~~~~~a~~~~l 233 (233)
T cd06425 194 EKEIFPKMASEGQLYAYELPGFWMDIGQPKDFLKGMSLYL 233 (233)
T ss_pred hhhhHHHHHhcCCEEEEeeCCEEEcCCCHHHHHHHHHHhC
Confidence 4689999999999999999999999999999999998765
No 13
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=100.00 E-value=1e-38 Score=305.88 Aligned_cols=235 Identities=21% Similarity=0.360 Sum_probs=193.5
Q ss_pred EEEEcCC--CCCcCCCCCCCCCccceecCCcchHHHHHHHHhHh-CCCCeEEEEccCCchhHHHHHHhhccCCCCcccCC
Q 015713 95 AIILGGG--AGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCIN-SGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGD 171 (402)
Q Consensus 95 AIILAaG--~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~-~GI~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~~ 171 (402)
||||||| .||||+|+|..+||||+||+|+ |||+|++++|.+ +|+++|+|++++..+++.+|+.... ..++.
T Consensus 1 ~iIla~G~~~GtRl~plt~~~PK~llpv~g~-plI~~~l~~l~~~~gi~~i~iv~~~~~~~i~~~l~~~~-----~~~~~ 74 (257)
T cd06428 1 AVILVGGPQKGTRFRPLSLDVPKPLFPVAGK-PMIHHHIEACAKVPDLKEVLLIGFYPESVFSDFISDAQ-----QEFNV 74 (257)
T ss_pred CEEEccCCCCCcccCCccCCCCcccCeECCe-eHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHhcc-----cccCc
Confidence 6999999 8999999999999999999999 999999999999 6999999999999999999986321 01121
Q ss_pred CcEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCccCCccHHHHHHHHHhCCCcEEEEEEEcC
Q 015713 172 GFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMD 251 (402)
Q Consensus 172 ~~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~di~~~l~~h~~~~aditi~~~~~~ 251 (402)
.+.++. |.. ..||++|++++..+++. ...++|+|++||++++.|+.++++.|.++++++|+++.+++
T Consensus 75 -~i~~~~--~~~-------~~Gt~~al~~a~~~l~~---~~~~~~lv~~gD~~~~~dl~~~~~~h~~~~~~~tl~~~~~~ 141 (257)
T cd06428 75 -PIRYLQ--EYK-------PLGTAGGLYHFRDQILA---GNPSAFFVLNADVCCDFPLQELLEFHKKHGASGTILGTEAS 141 (257)
T ss_pred -eEEEec--CCc-------cCCcHHHHHHHHHHhhc---cCCCCEEEEcCCeecCCCHHHHHHHHHHcCCCEEEEEEEcc
Confidence 233332 221 36999999999988852 12578999999999999999999999999999999998875
Q ss_pred CCCCCcceEEEEC-CCCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEehHHHHHHHHhhCC----
Q 015713 252 DCRASDYGLMKID-RSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYP---- 326 (402)
Q Consensus 252 ~~~~~~~g~v~iD-~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~~~~l~~ll~~~~~---- 326 (402)
.+....||++.+| ++|+|++|.|||.... +.++++|+|+|++++|..+. ...+
T Consensus 142 ~~~~~~yg~v~~d~~~g~v~~~~Ekp~~~~---------------------~~~~~~Giyi~~~~~~~~i~-~~~~~~~~ 199 (257)
T cd06428 142 REQASNYGCIVEDPSTGEVLHYVEKPETFV---------------------SDLINCGVYLFSPEIFDTIK-KAFQSRQQ 199 (257)
T ss_pred ccccccccEEEEeCCCCeEEEEEeCCCCcc---------------------cceEEEEEEEECHHHHHHHh-hhcccccc
Confidence 4457889999998 6799999999986432 35799999999999986543 2211
Q ss_pred --------------CCCchhhccHHhhhcCCcEEEEEEcCeEEecCCHHHHHHHHhHh
Q 015713 327 --------------LSNDFGSEIIPASVKDHNVQAFLFNDYWEDIGTIKSFFMPIWPS 370 (402)
Q Consensus 327 --------------~~~d~~~~ii~~li~~~~v~a~~~~g~w~DIgtp~d~~~A~~~l 370 (402)
...++..++++.++.+++|++|.++|||.|||||++|++||+.+
T Consensus 200 e~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~~~~g~w~dig~~~~~~~a~~~~ 257 (257)
T cd06428 200 EAQLGDDNNREGRAEVIRLEQDVLTPLAGSGKLYVYKTDDFWSQIKTAGSAIYANRLY 257 (257)
T ss_pred ccccccccccccccceeeehhhhhhHHhccCCEEEecCCCeeecCCCHHHHHhHhhcC
Confidence 11234579999999999999999999999999999999999853
No 14
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=100.00 E-value=1.3e-38 Score=319.39 Aligned_cols=276 Identities=46% Similarity=0.834 Sum_probs=216.8
Q ss_pred EEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCCCCeEEEEccCCchhHHHHHHhhccCCCCcccCCCcE
Q 015713 95 AIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFV 174 (402)
Q Consensus 95 AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~GI~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~~~~V 174 (402)
|||||||.||||+|+|..+||||+||+|+||||+|++++|.++||++|+|++++..+++.+|+.+.|++.. . ....+
T Consensus 1 aiILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~-~--~~~~~ 77 (361)
T TIGR02091 1 AMVLAGGRGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINSGIRRIGVLTQYKSHSLNRHIQRGWDFDG-F--IDGFV 77 (361)
T ss_pred CEEeCCCCCCccchhhhCCccccceecceeeEeeehhhhhhhcCCceEEEEeccChHHHHHHHHhccCccC-c--cCCCE
Confidence 69999999999999999999999999999789999999999999999999999999999999986553211 0 01235
Q ss_pred EEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCccCCccHHHHHHHHHhCCCcEEEEEEEcCCCC
Q 015713 175 EVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCR 254 (402)
Q Consensus 175 ~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~di~~~l~~h~~~~aditi~~~~~~~~~ 254 (402)
+++...+. +....|+.||+++++++.+++++ ...++|+|++||++++.++.++++.|.+.++++++++.+.+.+.
T Consensus 78 ~~~~~~~~--~~~~~~~~Gt~~al~~a~~~~~~---~~~~~~lv~~gD~l~~~~l~~~l~~~~~~~~~~ti~~~~~~~~~ 152 (361)
T TIGR02091 78 TLLPAQQR--ESGTDWYQGTADAVYQNLDLIED---YDPEYVLILSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRKE 152 (361)
T ss_pred EEeCCccc--CCCCccccCcHHHHHHHHHHHHh---cCCCEEEEecCCEEEcCCHHHHHHHHHHcCCCEEEEEEecChHh
Confidence 55543332 12345678999999999998852 12478999999999999999999999988888898888776555
Q ss_pred CCcceEEEECCCCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEehHHHHHHHHhhC---CCCCch
Q 015713 255 ASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSY---PLSNDF 331 (402)
Q Consensus 255 ~~~~g~v~iD~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~~~~l~~ll~~~~---~~~~d~ 331 (402)
...||++.+|++|+|.+|.|||..+... .+. ...+++++|+|+|++++|..+++... ....++
T Consensus 153 ~~~~g~v~~d~~~~v~~~~ekp~~~~~~--------~~~------~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~ 218 (361)
T TIGR02091 153 ASRFGVMQVDEDGRIVDFEEKPANPPSI--------PGM------PDFALASMGIYIFDKDVLKELLEEDADDPESSHDF 218 (361)
T ss_pred cccccEEEECCCCCEEEEEECCCCcccc--------ccc------ccccEEeeeEEEEcHHHHHHHHHHHhhcCCccccc
Confidence 7889999999889999999998543210 000 01247999999999999866665432 123456
Q ss_pred hhccHHhhhcCCcEEEEEEcCeEEecCCHHHHHHHHhHhhcccCCccc--------cccccCCCccccc
Q 015713 332 GSEIIPASVKDHNVQAFLFNDYWEDIGTIKSFFMPIWPSQNSLRSLNF--------MIPRHLSIRLLDS 392 (402)
Q Consensus 332 ~~~ii~~li~~~~v~a~~~~g~w~DIgtp~d~~~A~~~ll~~~~~~~~--------t~~~~~pp~~~~~ 392 (402)
..++++.+++++++++|.++++|.||||+++|++|++.++++.+..++ +....++|+.|..
T Consensus 219 ~~d~l~~l~~~~~v~~~~~~~~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 287 (361)
T TIGR02091 219 GKDIIPRALEEGSVQAYLFSGYWRDVGTIDSFWEANMDLVSVVPPFDLYDRKWPIYTYNEFLPPAKFVD 287 (361)
T ss_pred HHHHHHHHhhcCceEEEeeCCEEEECCCHHHHHHHHHHHhCCCchhhccccCCceecCCCCCCCceEec
Confidence 679999999999999999999999999999999999999987653321 3334555555544
No 15
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.2e-38 Score=297.98 Aligned_cols=238 Identities=26% Similarity=0.442 Sum_probs=204.1
Q ss_pred eeEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCCCCeEEEEccCCchhHHHHHHhhccCCCCcccCCC
Q 015713 93 VAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDG 172 (402)
Q Consensus 93 m~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~GI~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~~~ 172 (402)
|+|||||||.||||+|+|...||+|+||.++ |||+|+|+.|..+||++|.|+++++......++ +++|..||
T Consensus 1 mKgiILAgG~GTRL~PlT~~~~KqLlpV~~K-Pmi~y~l~~L~~aGI~dI~II~~~~~~~~~~~l-----lGdgs~~g-- 72 (286)
T COG1209 1 MKGVILAGGSGTRLRPLTRVVPKQLLPVYDK-PMIYYPLETLMLAGIRDILIVVGPEDKPTFKEL-----LGDGSDFG-- 72 (286)
T ss_pred CCcEEecCcCccccccccccCCcccceecCc-chhHhHHHHHHHcCCceEEEEecCCchhhhhhh-----hcCccccC--
Confidence 7899999999999999999999999999999 999999999999999999999998554333222 57888887
Q ss_pred cEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCccCCccHHHHHHHHHhCCCcEEEEEEEcCC
Q 015713 173 FVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDD 252 (402)
Q Consensus 173 ~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~di~~~l~~h~~~~aditi~~~~~~~ 252 (402)
+.+.++.|.. +.|-|+|+..+.+++. +++|+++.||.++..++.++++.+.+.+.++++...++++
T Consensus 73 -v~itY~~Q~~-------p~GlA~Av~~a~~fv~------~~~f~l~LGDNi~~~~l~~~~~~~~~~~~ga~i~~~~V~d 138 (286)
T COG1209 73 -VDITYAVQPE-------PDGLAHAVLIAEDFVG------DDDFVLYLGDNIFQDGLSELLEHFAEEGSGATILLYEVDD 138 (286)
T ss_pred -cceEEEecCC-------CCcHHHHHHHHHhhcC------CCceEEEecCceeccChHHHHHHHhccCCCcEEEEEEcCC
Confidence 4555566654 4699999999998874 5999999999988779999999999988899999999987
Q ss_pred CCCCcceEEEECCCCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEehHHHHHHHHhhCCCC--Cc
Q 015713 253 CRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLS--ND 330 (402)
Q Consensus 253 ~~~~~~g~v~iD~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~~~~l~~ll~~~~~~~--~d 330 (402)
+++||++++|++|+|+++.|||..+. ++++-+|+|+|+++++. ..+...|+. +.
T Consensus 139 --P~rfGV~e~d~~~~v~~l~EKP~~P~---------------------SNlAvtGlY~~d~~Vf~-~~~~ikPS~RGEl 194 (286)
T COG1209 139 --PSRYGVVEFDEDGKVIGLEEKPKEPK---------------------SNLAVTGLYFYDPSVFE-AIKQIKPSARGEL 194 (286)
T ss_pred --cccceEEEEcCCCcEEEeEECCCCCC---------------------CceeEEEEEEeChHHHH-HHHcCCCCCCCce
Confidence 89999999999999999999999774 58999999999999997 555555542 23
Q ss_pred hhhccHHhhhcCCc-EEEEEEcCeEEecCCHHHHHHHHhHhhcccCC
Q 015713 331 FGSEIIPASVKDHN-VQAFLFNDYWEDIGTIKSFFMPIWPSQNSLRS 376 (402)
Q Consensus 331 ~~~~ii~~li~~~~-v~a~~~~g~w~DIgtp~d~~~A~~~ll~~~~~ 376 (402)
-++++++.+++++. +......|.|.|.||++||++|++.++..+..
T Consensus 195 EITd~i~~~i~~G~~~~~~~~~G~WlDtGt~~slleA~~~i~~~~~~ 241 (286)
T COG1209 195 EITDAIDLYIEKGYLVVAILIRGWWLDTGTPESLLEANNFVRTVSKR 241 (286)
T ss_pred EehHHHHHHHHcCcEEEEEEccceEEecCChhhHHHHHHHHHHHHhh
Confidence 36899999999985 55567788999999999999999999875543
No 16
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=100.00 E-value=1.1e-38 Score=320.89 Aligned_cols=273 Identities=23% Similarity=0.354 Sum_probs=205.0
Q ss_pred CeeEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCCCCeEEEEccCCch-hHHHHHHhhccCCCCcccC
Q 015713 92 NVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSF-SLNRHLARSYNLGNGVNFG 170 (402)
Q Consensus 92 ~m~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~GI~~IiVv~~~~~~-~i~~~l~~~y~~~~g~~~~ 170 (402)
.|+|||||||.||||+|||.++||||+||+|+||||+|++++|.++|+++|+|+++|..+ ++.+||.+...++-.....
T Consensus 2 ~~~avila~g~gtRL~PLT~~~PKpLlpV~gk~PlIe~~l~~L~~~Gi~~I~iv~~~~~~~~I~~~l~~~~~~~~~~~~~ 81 (369)
T TIGR02092 2 KMSAIINLTESSKNLSPLTKVRPLASLPFGGRYRLIDFPLSNMVNAGIRNVFIFFKNKERQSLFDHLGSGREWDLHRKRD 81 (369)
T ss_pred cEEEEEECCCCCccccccccCCcccccccCCeeeEEEEEhhhhhccCCCEEEEEeCCCcHHHHHHHHhCCCCCCcccccC
Confidence 589999999999999999999999999999998899999999999999999999999887 9999996421111111100
Q ss_pred CCcEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCccCCccHHHHHHHHHhCCCcEEEEEEEc
Q 015713 171 DGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPM 250 (402)
Q Consensus 171 ~~~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~di~~~l~~h~~~~aditi~~~~~ 250 (402)
+.+.++ .|... .+-.|+++++++++++++. ...++|||++||++++.|+.+++++|.++++++|+++.++
T Consensus 82 -~~~~~~--~~e~~----~l~tg~~~a~~~a~~~l~~---~~~~~~lvlnGD~l~~~dl~~ll~~h~~~~a~~tl~~~~v 151 (369)
T TIGR02092 82 -GLFVFP--YNDRD----DLSEGGKRYFSQNLEFLKR---STSEYTVVLNSHMVCNIDLKAVLKYHEETGKDITVVYKKV 151 (369)
T ss_pred -cEEEEe--ccCCC----CcccChHHHHHHHHHHHHh---CCCCEEEEECCCEEEecCHHHHHHHHHHcCCCEEEEEEec
Confidence 111112 12211 1224778889999888852 1247899999999999999999999999999999999887
Q ss_pred CCCCCCcc-eEEEECCCCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEehHHHHHHHHhhCCC-C
Q 015713 251 DDCRASDY-GLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPL-S 328 (402)
Q Consensus 251 ~~~~~~~~-g~v~iD~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~~~~l~~ll~~~~~~-~ 328 (402)
+...+..| +++.+|++|+|..|.+++.... ...+++|+|+|++++|.++++...+. .
T Consensus 152 ~~~~~~~~g~vv~~~~~g~v~~~~~~~~~~~---------------------~~~~~~Giyi~~~~~l~~~l~~~~~~~~ 210 (369)
T TIGR02092 152 KPADASEYDTILRFDESGKVKSIGQNLNPEE---------------------EENISLDIYIVSTDLLIELLYECIQRGK 210 (369)
T ss_pred CHHHccccCcEEEEcCCCCEEeccccCCCCC---------------------cceeeeeEEEEEHHHHHHHHHHHhhcCc
Confidence 64346677 4566777788888754432211 24578999999999887676554332 3
Q ss_pred CchhhccHHhhhcCCcEEEEEEcCeEEecCCHHHHHHHHhHhhcccCCcc-c--------cccccCCCccccc-ccc
Q 015713 329 NDFGSEIIPASVKDHNVQAFLFNDYWEDIGTIKSFFMPIWPSQNSLRSLN-F--------MIPRHLSIRLLDS-CHP 395 (402)
Q Consensus 329 ~d~~~~ii~~li~~~~v~a~~~~g~w~DIgtp~d~~~A~~~ll~~~~~~~-~--------t~~~~~pp~~~~~-~~~ 395 (402)
.++..++++.++.++++++|.++|||.|||||++|.+|++.++++..... + +...+.||+++.. |+|
T Consensus 211 ~~~~~d~i~~~~~~~~v~~~~~~g~w~dIgt~~~l~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~i 287 (369)
T TIGR02092 211 LTSLEELIRENLKELNINAYEYTGYLANINSVKSYYKANMDLLDPQNFQSLFYSSQGPIYTKVKDEPPTYYAENSKV 287 (369)
T ss_pred cccHHHHHHHHhccCcEEEEecCCceeEcCCHHHHHHHHHHHhCCcchhhhcCCCCCceeeccCCCCCcEEcCCCEE
Confidence 34567899999888899999999999999999999999999997653221 1 3333557877743 444
No 17
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=100.00 E-value=2.9e-37 Score=301.58 Aligned_cols=237 Identities=24% Similarity=0.396 Sum_probs=190.9
Q ss_pred CCCeeEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCCCCeEEEEcc-CCchhHHHHHHhhccCCCCcc
Q 015713 90 PKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQ-FNSFSLNRHLARSYNLGNGVN 168 (402)
Q Consensus 90 ~~~m~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~GI~~IiVv~~-~~~~~i~~~l~~~y~~~~g~~ 168 (402)
|+.|+|||||||.||||+|+|..+||||+||+|+ |||+|++++|..+||++|+|++. +..+.+.+|+. ++..
T Consensus 1 m~~~kaIILAgG~GtRL~PlT~~~pK~Llpv~gk-PmI~~~l~~l~~aGi~~I~ii~~~~~~~~~~~~l~------~g~~ 73 (292)
T PRK15480 1 MKTRKGIILAGGSGTRLYPVTMAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLG------DGSQ 73 (292)
T ss_pred CCceEEEEECCCcccccCcccCCCCceEeEECCE-EHHHHHHHHHHHCCCCEEEEEecCCchHHHHHHHc------Cccc
Confidence 5679999999999999999999999999999999 99999999999999999997765 45566777664 3334
Q ss_pred cCCCcEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCcc-CCccHHHHHHHHHhCCCcEEEEE
Q 015713 169 FGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHL-YRMDYTEFLQKHIDTKADITVSC 247 (402)
Q Consensus 169 ~~~~~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l-~~~di~~~l~~h~~~~aditi~~ 247 (402)
|+.. +.+. .|.. +.||++|+..+..++. .+++++++||++ ++.++.++++.|.+.++++|+++
T Consensus 74 ~g~~-i~y~--~q~~-------~~Gta~Al~~a~~~i~------~~~~~lv~gD~i~~~~~l~~ll~~~~~~~~~~tv~~ 137 (292)
T PRK15480 74 WGLN-LQYK--VQPS-------PDGLAQAFIIGEEFIG------GDDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFA 137 (292)
T ss_pred cCce-eEEE--ECCC-------CCCHHHHHHHHHHHhC------CCCEEEEECCeeeeccCHHHHHHHHHhCCCCeEEEE
Confidence 5432 3333 3322 3699999999998884 356888899975 57899999999988888999988
Q ss_pred EEcCCCCCCcceEEEECCCCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEehHHHHHHHHhhCCC
Q 015713 248 VPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPL 327 (402)
Q Consensus 248 ~~~~~~~~~~~g~v~iD~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~~~~l~~ll~~~~~~ 327 (402)
.++++ ++.||++.+|++|+|++|.|||..+. +.++++|+|+|+++++.. ++...+.
T Consensus 138 ~~v~~--p~~yGvv~~d~~g~v~~i~EKP~~p~---------------------s~~a~~GiY~~~~~v~~~-~~~~~~~ 193 (292)
T PRK15480 138 YHVND--PERYGVVEFDQNGTAISLEEKPLQPK---------------------SNYAVTGLYFYDNDVVEM-AKNLKPS 193 (292)
T ss_pred EEcCC--cccCcEEEECCCCcEEEEEECCCCCC---------------------CCEEEEEEEEEChHHHHH-HhhcCCC
Confidence 88865 78999999998899999999997442 468999999999998864 4433332
Q ss_pred --CCchhhccHHhhhcCCcEEE-EEEcCe-EEecCCHHHHHHHHhHhhcc
Q 015713 328 --SNDFGSEIIPASVKDHNVQA-FLFNDY-WEDIGTIKSFFMPIWPSQNS 373 (402)
Q Consensus 328 --~~d~~~~ii~~li~~~~v~a-~~~~g~-w~DIgtp~d~~~A~~~ll~~ 373 (402)
..-.++++++.+++++.+.+ +..+|+ |+|||||++|.+|++.+..-
T Consensus 194 ~~ge~~itd~~~~~l~~g~~~~~~~~~g~~W~DiGt~~~l~~a~~~~~~~ 243 (292)
T PRK15480 194 ARGELEITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLIEASNFIATI 243 (292)
T ss_pred CCCeeEhHHHHHHHHhcCCeEEEEecCCcEEECCCCHHHHHHHHHHHHHH
Confidence 12235799999999887644 466785 99999999999999988743
No 18
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=100.00 E-value=2.8e-37 Score=292.72 Aligned_cols=232 Identities=25% Similarity=0.396 Sum_probs=188.5
Q ss_pred eeEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCCCCeEEEEccCC-chhHHHHHHhhccCCCCcccCC
Q 015713 93 VAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFN-SFSLNRHLARSYNLGNGVNFGD 171 (402)
Q Consensus 93 m~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~GI~~IiVv~~~~-~~~i~~~l~~~y~~~~g~~~~~ 171 (402)
|+|||||||.||||+|+|..+||||+||+|+ |||+|+++++.++|+++|+|++++. .+++.+|+.. +..|+
T Consensus 1 m~~iIlAaG~gtRl~plt~~~pK~llpv~~~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~l~~------~~~~~- 72 (240)
T cd02538 1 MKGIILAGGSGTRLYPLTKVVSKQLLPVYDK-PMIYYPLSTLMLAGIREILIISTPEDLPLFKELLGD------GSDLG- 72 (240)
T ss_pred CeEEEEcCcCcccCCccccCCCceeeEECCE-EhHHHHHHHHHHCCCCEEEEEeCcchHHHHHHHHhc------ccccC-
Confidence 6899999999999999999999999999998 9999999999999999999998764 4678777752 22233
Q ss_pred CcEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCccC-CccHHHHHHHHHhCCCcEEEEEEEc
Q 015713 172 GFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLY-RMDYTEFLQKHIDTKADITVSCVPM 250 (402)
Q Consensus 172 ~~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~-~~di~~~l~~h~~~~aditi~~~~~ 250 (402)
+.+....+. ...||++|++.+..+++ .++|+|++||+++ +.++.++++.|.++++++++++.+.
T Consensus 73 --~~i~~~~~~-------~~~G~~~al~~a~~~~~------~~~~lv~~gD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (240)
T cd02538 73 --IRITYAVQP-------KPGGLAQAFIIGEEFIG------DDPVCLILGDNIFYGQGLSPILQRAAAQKEGATVFGYEV 137 (240)
T ss_pred --ceEEEeeCC-------CCCCHHHHHHHHHHhcC------CCCEEEEECCEEEccHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 333333332 13699999999988874 3789999999854 6789999999998889999998887
Q ss_pred CCCCCCcceEEEECCCCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEehHHHHHHHHhhCCC--C
Q 015713 251 DDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPL--S 328 (402)
Q Consensus 251 ~~~~~~~~g~v~iD~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~~~~l~~ll~~~~~~--~ 328 (402)
++ ++.||.+.+|++|+|++|.|||.... ..++++|+|+|++++|. +++...+. .
T Consensus 138 ~~--~~~~g~v~~d~~g~v~~~~ekp~~~~---------------------~~~~~~Giyi~~~~~l~-~l~~~~~~~~~ 193 (240)
T cd02538 138 ND--PERYGVVEFDENGRVLSIEEKPKKPK---------------------SNYAVTGLYFYDNDVFE-IAKQLKPSARG 193 (240)
T ss_pred Cc--hhcCceEEecCCCcEEEEEECCCCCC---------------------CCeEEEEEEEECHHHHH-HHHhcCCCCCC
Confidence 65 67899999998899999999986432 24789999999999885 55543222 2
Q ss_pred CchhhccHHhhhcCCcEEEEEEc--CeEEecCCHHHHHHHHhHhh
Q 015713 329 NDFGSEIIPASVKDHNVQAFLFN--DYWEDIGTIKSFFMPIWPSQ 371 (402)
Q Consensus 329 ~d~~~~ii~~li~~~~v~a~~~~--g~w~DIgtp~d~~~A~~~ll 371 (402)
..+..++++.+++++++.++.+. |+|+|||||++|++|++.+.
T Consensus 194 ~~~l~d~~~~l~~~g~~~~~~~~~~g~w~digt~~~~~~a~~~~~ 238 (240)
T cd02538 194 ELEITDVNNEYLEKGKLSVELLGRGFAWLDTGTHESLLEASNFVQ 238 (240)
T ss_pred eEEhHHHHHHHHHhCCeEEEEeCCCcEEEeCCCHHHHHHHHHHHh
Confidence 23456999999999888888776 99999999999999999763
No 19
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=100.00 E-value=1.9e-37 Score=298.35 Aligned_cols=245 Identities=22% Similarity=0.281 Sum_probs=191.4
Q ss_pred eeEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCCCCeEEEEccCCchhHHHHHHhhccCCCCc-ccCC
Q 015713 93 VAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGV-NFGD 171 (402)
Q Consensus 93 m~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~GI~~IiVv~~~~~~~i~~~l~~~y~~~~g~-~~~~ 171 (402)
|+|||||||.||||+|+|..+||||+||+|+ |||+|+++++.++|+++|+|+++++.+++.+|+...+.+.... ..+.
T Consensus 1 mkaiIlAaG~gtRl~plt~~~pK~llpv~gk-pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 79 (267)
T cd02541 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PVIQYIVEEAVAAGIEDIIIVTGRGKRAIEDHFDRSYELEETLEKKGK 79 (267)
T ss_pred CeEEEEcCCCCccCCCcccCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHhCCcHHHHHHHHhccc
Confidence 6899999999999999999999999999999 9999999999999999999999999999999996433110000 0000
Q ss_pred -----------CcEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCccCCc---cHHHHHHHHH
Q 015713 172 -----------GFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRM---DYTEFLQKHI 237 (402)
Q Consensus 172 -----------~~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~---di~~~l~~h~ 237 (402)
..+.+....| .+.+||++||+++..+++ .++|+|++||+++.. ++.++++.|.
T Consensus 80 ~~~~~~~~~~~~~~~i~~~~~-------~~~~Gt~~al~~~~~~i~------~~~~lv~~gD~~~~~~~~~~~~l~~~~~ 146 (267)
T cd02541 80 TDLLEEVRIISDLANIHYVRQ-------KEPLGLGHAVLCAKPFIG------DEPFAVLLGDDLIDSKEPCLKQLIEAYE 146 (267)
T ss_pred HHHhhhhhcccCCceEEEEEc-------CCCCChHHHHHHHHHHhC------CCceEEEECCeEEeCCchHHHHHHHHHH
Confidence 0122222222 134799999999998874 378999999998764 4999999998
Q ss_pred hCCCcEEEEEEEcCCCCCCcceEEEECC----CCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEe
Q 015713 238 DTKADITVSCVPMDDCRASDYGLMKIDR----SGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFR 313 (402)
Q Consensus 238 ~~~aditi~~~~~~~~~~~~~g~v~iD~----~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~ 313 (402)
+.++++ +++.+.+.+....||++.+|+ +++|.+|.|||..... ...++++|+|+|+
T Consensus 147 ~~~~~~-~~~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~-------------------~~~~~~~Giyi~~ 206 (267)
T cd02541 147 KTGASV-IAVEEVPPEDVSKYGIVKGEKIDGDVFKVKGLVEKPKPEEA-------------------PSNLAIVGRYVLT 206 (267)
T ss_pred HhCCCE-EEEEEcChhcCccceEEEeecCCCCceEEeEEEECCCCCCC-------------------CCceEEEEEEEcC
Confidence 877764 556665544578899999985 2589999999874321 1367899999999
Q ss_pred hHHHHHHHHhhC-CCCCchhhccHHhhhcCCcEEEEEEcCeEEecCCHHHHHHHHhHhh
Q 015713 314 TDVLLNLLRSSY-PLSNDFGSEIIPASVKDHNVQAFLFNDYWEDIGTIKSFFMPIWPSQ 371 (402)
Q Consensus 314 ~~~l~~ll~~~~-~~~~d~~~~ii~~li~~~~v~a~~~~g~w~DIgtp~d~~~A~~~ll 371 (402)
+++|..+.+... .....++.++++.++++++|++|.++|||.|||||++|++|++.+.
T Consensus 207 ~~~~~~l~~~~~~~~~e~~~~d~i~~l~~~~~v~~~~~~g~w~digt~~~y~~a~~~~~ 265 (267)
T cd02541 207 PDIFDILENTKPGKGGEIQLTDAIAKLLEEEPVYAYVFEGKRYDCGNKLGYLKATVEFA 265 (267)
T ss_pred HHHHHHHHhCCCCCCCcEEHHHHHHHHHhcCCEEEEEeeeEEEeCCCHHHHHHHHHHHh
Confidence 999876543211 1123456799999999999999999999999999999999999875
No 20
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=100.00 E-value=2.5e-37 Score=296.23 Aligned_cols=240 Identities=20% Similarity=0.265 Sum_probs=187.6
Q ss_pred eeEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCCCCeEEEEccCCchhHHHHHHhhccCC-----CCc
Q 015713 93 VAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLG-----NGV 167 (402)
Q Consensus 93 m~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~GI~~IiVv~~~~~~~i~~~l~~~y~~~-----~g~ 167 (402)
|+|||||||.||||+|+|..+||||+||+|+ |||+|+++++.++|+++|+|+++++.+++.+|+...|.++ .+.
T Consensus 1 m~avIlAaG~gtRl~plt~~~pK~llpi~g~-pli~~~l~~l~~~gi~~v~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 79 (260)
T TIGR01099 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PLIQYVVEEAVEAGIEDILIVTGRGKRAIEDHFDTSYELEHQLEKRGK 79 (260)
T ss_pred CeEEEEcccCcccCCCcccCCCceeEEECCE-EHHHHHHHHHHhCCCCEEEEEeCCcHHHHHHHhcccHHHHHHHHhhhh
Confidence 6899999999999999999999999999999 9999999999999999999999999999999996433111 000
Q ss_pred ccC-------CCcEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCccCCc---cHHHHHHHHH
Q 015713 168 NFG-------DGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRM---DYTEFLQKHI 237 (402)
Q Consensus 168 ~~~-------~~~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~---di~~~l~~h~ 237 (402)
.+. ...+.+....| .+..||++|++++..++. .++|+|++||+++.. ++.++++.|.
T Consensus 80 ~~~~~~~~~~~~~~~i~~~~~-------~~~~G~~~al~~~~~~~~------~~~~lv~~gD~~~~~~~~~~~~l~~~~~ 146 (260)
T TIGR01099 80 EELLKEVRSISPLATIFYVRQ-------KEQKGLGHAVLCAEPFVG------DEPFAVILGDDIVVSEEPALKQMIDLYE 146 (260)
T ss_pred HHHHHHhhhccccceEEEEec-------CCCCCHHHHHHHHHHhhC------CCCEEEEeccceecCCcHHHHHHHHHHH
Confidence 000 00012222122 234699999999998873 478999999998753 7999999999
Q ss_pred hCCCcEEEEEEEcCCCCCCcceEEEECC----CCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEe
Q 015713 238 DTKADITVSCVPMDDCRASDYGLMKIDR----SGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFR 313 (402)
Q Consensus 238 ~~~aditi~~~~~~~~~~~~~g~v~iD~----~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~ 313 (402)
++++++ +++...+.+....||++.+|. +|+|+.|.|||..... ...++++|+|+|+
T Consensus 147 ~~~~~i-i~~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~-------------------~~~~~~~Giyi~~ 206 (260)
T TIGR01099 147 KYGCSI-IAVEEVPKEEVSKYGVIDGEGVEEGLYEIKDMVEKPKPEEA-------------------PSNLAIVGRYVLT 206 (260)
T ss_pred HhCCCE-EEEEECChhhcccCceEEeccccCCceeEEEEEECCCCCCC-------------------CCceEEEEEEECC
Confidence 888886 566666544578899999872 3799999999863321 1357899999999
Q ss_pred hHHHHHHHHhhCC-CCCchhhccHHhhhcCCcEEEEEEcCeEEecCCHHHHHHH
Q 015713 314 TDVLLNLLRSSYP-LSNDFGSEIIPASVKDHNVQAFLFNDYWEDIGTIKSFFMP 366 (402)
Q Consensus 314 ~~~l~~ll~~~~~-~~~d~~~~ii~~li~~~~v~a~~~~g~w~DIgtp~d~~~A 366 (402)
+++|..+.+.... ....++.++++.++++++|++|.++|||.|||||++|++|
T Consensus 207 ~~~~~~l~~~~~~~~~~~~l~d~i~~l~~~~~v~~~~~~g~w~digs~~~y~~a 260 (260)
T TIGR01099 207 PDIFDLLEETPPGAGGEIQLTDALRKLLEKETVYAYKFKGKRYDCGSKLGYLKA 260 (260)
T ss_pred HHHHHHHHhCCCCCCCceeHHHHHHHHHhcCCEEEEEcceEEEeCCCHHHHhhC
Confidence 9998766443221 1234567899999999999999999999999999999975
No 21
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=100.00 E-value=7.8e-37 Score=292.98 Aligned_cols=234 Identities=21% Similarity=0.318 Sum_probs=190.7
Q ss_pred eEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCCCCeEEEEccCCchhHHHHHHhhccCCCCccc--CC
Q 015713 94 AAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNF--GD 171 (402)
Q Consensus 94 ~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~GI~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~--~~ 171 (402)
+|||||||.||||+|+|..+||||+||+|+ |||+|+++++.++||++|+|+++|..+++.+|+.+....+.+.++ ..
T Consensus 1 kavilaaG~gtRl~~~t~~~pK~llpv~g~-pii~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 79 (254)
T TIGR02623 1 KAVILAGGLGTRISEETHLRPKPMVEIGGK-PILWHIMKIYSHHGINDFIICCGYKGYVIKEYFANYFLHMSDVTFHMAD 79 (254)
T ss_pred CEEEEcCccccccCccccCCCcceeEECCE-EHHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHHHhhhhcccCeeEEecc
Confidence 589999999999999999999999999999 899999999999999999999999999999998642101111110 00
Q ss_pred ------------CcEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCccCCccHHHHHHHHHhC
Q 015713 172 ------------GFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDT 239 (402)
Q Consensus 172 ------------~~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~di~~~l~~h~~~ 239 (402)
..+.+.. | ..+.||++||+++..++. .++|+|++||++++.|+.++++.|.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~--~-------~~~~gt~~al~~~~~~i~------~e~flv~~gD~i~~~dl~~~~~~h~~~ 144 (254)
T TIGR02623 80 NTMEVHHKRVEPWRVTLVD--T-------GESTQTGGRLKRVREYLD------DEAFCFTYGDGVADIDIKALIAFHRKH 144 (254)
T ss_pred cccccccccCCccceeeee--c-------CCcCCcHHHHHHHHHhcC------CCeEEEEeCCeEecCCHHHHHHHHHHc
Confidence 0011111 1 113699999999988873 478999999999999999999999999
Q ss_pred CCcEEEEEEEcCCCCCCcceEEEECCCCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEehHHHHH
Q 015713 240 KADITVSCVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLN 319 (402)
Q Consensus 240 ~aditi~~~~~~~~~~~~~g~v~iD~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~~~~l~~ 319 (402)
++++|+++.. .+..||.+.+|+ |+|++|.|||... ..++++|+|+|++++|.
T Consensus 145 ~~d~tl~~~~----~~~~yG~v~~d~-~~V~~~~Ekp~~~----------------------~~~i~~Giyi~~~~il~- 196 (254)
T TIGR02623 145 GKKATVTAVQ----PPGRFGALDLEG-EQVTSFQEKPLGD----------------------GGWINGGFFVLNPSVLD- 196 (254)
T ss_pred CCCEEEEEec----CCCcccEEEECC-CeEEEEEeCCCCC----------------------CCeEEEEEEEEcHHHHh-
Confidence 9999887653 257899999985 6999999998542 24789999999999985
Q ss_pred HHHhhCCCCCchhhccHHhhhcCCcEEEEEEcCeEEecCCHHHHHHHHhHhhccc
Q 015713 320 LLRSSYPLSNDFGSEIIPASVKDHNVQAFLFNDYWEDIGTIKSFFMPIWPSQNSL 374 (402)
Q Consensus 320 ll~~~~~~~~d~~~~ii~~li~~~~v~a~~~~g~w~DIgtp~d~~~A~~~ll~~~ 374 (402)
++++. ..++..++++.++.++++.+|.++|||.|||||++|.+|+..+..+.
T Consensus 197 ~l~~~---~~~~~~d~i~~l~~~~~v~~~~~~g~w~dIgt~~~~~~~~~~~~~~~ 248 (254)
T TIGR02623 197 LIDGD---ATVWEQEPLETLAQRGELSAYEHSGFWQPMDTLRDKNYLEELWESGR 248 (254)
T ss_pred hcccc---CchhhhhHHHHHHhCCCEEEEeCCCEEecCCchHHHHHHHHHHHcCC
Confidence 55432 23567899999999999999999999999999999999999887654
No 22
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=100.00 E-value=9.4e-37 Score=297.31 Aligned_cols=232 Identities=26% Similarity=0.428 Sum_probs=188.9
Q ss_pred eEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCCCCeEEEEcc-CCchhHHHHHHhhccCCCCcccCCC
Q 015713 94 AAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQ-FNSFSLNRHLARSYNLGNGVNFGDG 172 (402)
Q Consensus 94 ~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~GI~~IiVv~~-~~~~~i~~~l~~~y~~~~g~~~~~~ 172 (402)
+|||||||.||||+|+|..+||||+||+|+ |||+|+++++..+||++|+|+++ ++.+.+.+|+. ++..|+
T Consensus 1 kaIILAgG~GtRL~plT~~~pK~Llpv~gk-PmI~~~L~~l~~aGi~~I~iv~~~~~~~~~~~~lg------~g~~~g-- 71 (286)
T TIGR01207 1 KGIILAGGSGTRLYPITRAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLG------DGSQWG-- 71 (286)
T ss_pred CEEEECCCCCccCCcccCCCCceeeEECCE-EhHHHHHHHHHHCCCCEEEEEecCCcHHHHHHHhc------cccccC--
Confidence 589999999999999999999999999999 99999999999999999998875 55567766653 333454
Q ss_pred cEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCc-cCCccHHHHHHHHHhCCCcEEEEEEEcC
Q 015713 173 FVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-LYRMDYTEFLQKHIDTKADITVSCVPMD 251 (402)
Q Consensus 173 ~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~-l~~~di~~~l~~h~~~~aditi~~~~~~ 251 (402)
+.+....|.. +.||++|++.+..++. .+++++++||+ +++.++.++++.|.+.++++|+.+.+++
T Consensus 72 -~~i~~~~q~~-------~~Gta~al~~a~~~l~------~~~~~li~gD~i~~~~~l~~ll~~~~~~~~~~ti~~~~v~ 137 (286)
T TIGR01207 72 -VNLSYAVQPS-------PDGLAQAFIIGEDFIG------GDPSALVLGDNIFYGHDLSDLLKRAAARESGATVFAYQVS 137 (286)
T ss_pred -ceEEEEEccC-------CCCHHHHHHHHHHHhC------CCCEEEEECCEeccccCHHHHHHHHHhcCCCcEEEEEEcc
Confidence 3333334432 3699999999999884 37888889997 4678999999999888889999998887
Q ss_pred CCCCCcceEEEECCCCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEehHHHHHHHHhhCCC--CC
Q 015713 252 DCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPL--SN 329 (402)
Q Consensus 252 ~~~~~~~g~v~iD~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~~~~l~~ll~~~~~~--~~ 329 (402)
+ ++.||++.+|++|+|++|.|||..+. ++++++|+|+|+++++. +++...+. ..
T Consensus 138 ~--p~~yGvv~~d~~g~V~~i~EKp~~~~---------------------s~~~~~GiYi~~~~i~~-~l~~~~~~~~ge 193 (286)
T TIGR01207 138 D--PERYGVVEFDSNGRAISIEEKPAQPK---------------------SNYAVTGLYFYDNRVVE-IARQLKPSARGE 193 (286)
T ss_pred C--HHHCceEEECCCCeEEEEEECCCCCC---------------------CCEEEEEEEEEchHHHH-HHhhcCCCCCCc
Confidence 5 68899999998999999999996432 35799999999999875 45543332 12
Q ss_pred chhhccHHhhhcCCcEEEEEE-cCe-EEecCCHHHHHHHHhHhhc
Q 015713 330 DFGSEIIPASVKDHNVQAFLF-NDY-WEDIGTIKSFFMPIWPSQN 372 (402)
Q Consensus 330 d~~~~ii~~li~~~~v~a~~~-~g~-w~DIgtp~d~~~A~~~ll~ 372 (402)
..+.++++.+++++.+.++.+ +|+ |.|||||++|.+|+..+..
T Consensus 194 ~eitdv~~~~l~~g~l~v~~~~~g~~W~DiGt~~~l~~A~~~~~~ 238 (286)
T TIGR01207 194 LEITDLNRVYLEEGRLSVELLGRGYAWLDTGTHDSLLEASNFIQT 238 (286)
T ss_pred EeHHHHHHHHHHcCCcEEEEecCCCEEEeCCCHHHHHHHHHHHHH
Confidence 245799999999987766665 676 9999999999999987764
No 23
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=100.00 E-value=3.5e-36 Score=301.11 Aligned_cols=255 Identities=19% Similarity=0.325 Sum_probs=204.1
Q ss_pred eEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCCCCeEEEEccC-CchhHHHHHHhhccCCCCcccCCC
Q 015713 94 AAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQF-NSFSLNRHLARSYNLGNGVNFGDG 172 (402)
Q Consensus 94 ~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~GI~~IiVv~~~-~~~~i~~~l~~~y~~~~g~~~~~~ 172 (402)
+|||||||.||||+|+|..+||||+||+|+ |||+|++++|.++|+++|+|++++ +.+++.+|+.. +..|+..
T Consensus 1 kaiIlAaG~gtRl~plt~~~pK~l~pv~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~i~~~~~~------~~~~~~~ 73 (353)
T TIGR01208 1 KALILAAGKGTRLRPLTFTRPKQLIPVANK-PILQYAIEDLAEAGITDIGIVVGPVTGEEIKEIVGE------GERFGAK 73 (353)
T ss_pred CEEEECCcCcCccCccccCCCccccEECCE-eHHHHHHHHHHHCCCCEEEEEeCCCCHHHHHHHHhc------ccccCce
Confidence 589999999999999999999999999999 999999999999999999999999 88999988863 1223321
Q ss_pred cEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCccCCccHHHHHHHHHhCCCcEEEEEEEcCC
Q 015713 173 FVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDD 252 (402)
Q Consensus 173 ~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~di~~~l~~h~~~~aditi~~~~~~~ 252 (402)
+.++. +. +..||+++++.+..+++ .++|+|++||++++.++.++++.|.++++++++++.+.++
T Consensus 74 -~~~~~--~~-------~~~G~~~al~~a~~~l~------~~~~li~~gD~~~~~~l~~l~~~~~~~~~d~ti~~~~~~~ 137 (353)
T TIGR01208 74 -ITYIV--QG-------EPLGLAHAVYTARDFLG------DDDFVVYLGDNLIQDGISRFVKSFEEKDYDALILLTKVRD 137 (353)
T ss_pred -EEEEE--CC-------CCCCHHHHHHHHHHhcC------CCCEEEEECCeecCccHHHHHHHHHhcCCCcEEEEEECCC
Confidence 33332 21 24699999999998874 3689999999999999999999999999999999988765
Q ss_pred CCCCcceEEEECCCCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEehHHHHHHHHhhCCC--CCc
Q 015713 253 CRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPL--SND 330 (402)
Q Consensus 253 ~~~~~~g~v~iD~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~~~~l~~ll~~~~~~--~~d 330 (402)
+..||.+.+|++++|.+|.|||.... +..+++|+|+|++.++. .+++..+. ...
T Consensus 138 --~~~~g~~~~~~~~~v~~~~ekp~~~~---------------------~~~~~~Giy~~~~~l~~-~l~~~~~~~~~e~ 193 (353)
T TIGR01208 138 --PTAFGVAVLEDGKRILKLVEKPKEPP---------------------SNLAVVGLYMFRPLIFE-AIKNIKPSWRGEL 193 (353)
T ss_pred --hhhCeEEEEcCCCcEEEEEECCCCCC---------------------ccceEEEEEEECHHHHH-HHHhcCCCCCCcE
Confidence 57799988876789999999987542 35789999999997665 44443321 233
Q ss_pred hhhccHHhhhcCC-cEEEEEEcCeEEecCCHHHHHHHHhHhhcccCC-cc-c-cccccCCCccccc-ccc
Q 015713 331 FGSEIIPASVKDH-NVQAFLFNDYWEDIGTIKSFFMPIWPSQNSLRS-LN-F-MIPRHLSIRLLDS-CHP 395 (402)
Q Consensus 331 ~~~~ii~~li~~~-~v~a~~~~g~w~DIgtp~d~~~A~~~ll~~~~~-~~-~-t~~~~~pp~~~~~-~~~ 395 (402)
+..++++.+++++ +|++|.++|||.|||||+||++|++.++.+... .+ . +++...||+.+.+ |+|
T Consensus 194 ~l~d~l~~l~~~g~~v~~~~~~g~w~digt~~dl~~a~~~ll~~~~~~~~~i~~~~~i~~~~~i~~~~~i 263 (353)
T TIGR01208 194 EITDAIQWLIEKGYKVGGSKVTGWWKDTGKPEDLLDANRLILDEVEREVQGVDDESKIRGRVVVGEGAKI 263 (353)
T ss_pred EHHHHHHHHHHcCCeEEEEEeCcEEEeCCCHHHHHHHHHHHHhhcccccCCcCCCCEEcCCEEECCCCEE
Confidence 4678999999875 799999999999999999999999999985421 11 1 4455556666655 444
No 24
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=100.00 E-value=4.8e-36 Score=294.47 Aligned_cols=244 Identities=23% Similarity=0.323 Sum_probs=193.5
Q ss_pred CCeeEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCCCCeEEEEccCCchhHHHHHHhhccCCCC----
Q 015713 91 KNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNG---- 166 (402)
Q Consensus 91 ~~m~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~GI~~IiVv~~~~~~~i~~~l~~~y~~~~g---- 166 (402)
+.|+|||||||.||||+|+|..+||||+||+|+ |||+|+++++.++||++|+|++++..+++.+|+...++++..
T Consensus 7 ~~~~aiIlaaG~g~Rl~~~t~~~pK~l~pv~g~-pii~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~~~~~l~~~ 85 (302)
T PRK13389 7 KVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDK-PLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLEKR 85 (302)
T ss_pred cceEEEEECCcCCccCCCccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHccchhhhhhhhhh
Confidence 458999999999999999999999999999999 999999999999999999999999999999999643212100
Q ss_pred --cccCCC-------cEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCccCC--------ccH
Q 015713 167 --VNFGDG-------FVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYR--------MDY 229 (402)
Q Consensus 167 --~~~~~~-------~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~--------~di 229 (402)
..+..+ ...+....|. ...||++|++++..++. .++|+|++||++++ .++
T Consensus 86 ~~~~~~~e~~~i~~~~~~i~~~~q~-------~~~Gtg~Av~~a~~~~~------~~~~lVl~gD~~~~~~~~~~~~~dl 152 (302)
T PRK13389 86 VKRQLLDEVQSICPPHVTIMQVRQG-------LAKGLGHAVLCAHPVVG------DEPVAVILPDVILDEYESDLSQDNL 152 (302)
T ss_pred hhhHHHHhhhhccccCceEEEeecC-------CCCChHHHHHHHHHHcC------CCCEEEEeCcceecccccccccccH
Confidence 000000 0122222232 24699999999988763 47899999999874 789
Q ss_pred HHHHHHHHhCCCcEEEEEEEcCCCCCCcceEEEECC-------CCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCC
Q 015713 230 TEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDR-------SGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFP 302 (402)
Q Consensus 230 ~~~l~~h~~~~aditi~~~~~~~~~~~~~g~v~iD~-------~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~ 302 (402)
.++++.|.+.+++ ++++.++++ +..||++.+|+ +++|.+|.|||..... .+
T Consensus 153 ~~l~~~h~~~~~~-tl~~~~~~~--~~~yGvv~~~~~~~~~~~~~~V~~~~EKp~~~~~-------------------~s 210 (302)
T PRK13389 153 AEMIRRFDETGHS-QIMVEPVAD--VTAYGVVDCKGVELAPGESVPMVGVVEKPKADVA-------------------PS 210 (302)
T ss_pred HHHHHHHHhcCCC-EEEEEEccc--CCcceEEEecCcccccCCcceEEEEEECCCCCCC-------------------Cc
Confidence 9999999888876 677777744 78899998863 3589999999974321 13
Q ss_pred ceeeeeEEEEehHHHHHHHHhhCCC--CCchhhccHHhhhcCCcEEEEEEcCeEEecCCHHHHHHHHhHhh
Q 015713 303 YIASMGVYLFRTDVLLNLLRSSYPL--SNDFGSEIIPASVKDHNVQAFLFNDYWEDIGTIKSFFMPIWPSQ 371 (402)
Q Consensus 303 ~~~~~Giyvf~~~~l~~ll~~~~~~--~~d~~~~ii~~li~~~~v~a~~~~g~w~DIgtp~d~~~A~~~ll 371 (402)
.++++|+|+|++++|. +++...+. ...++.++++.++++++|.+|.++|+|+|||||++|.+|+.++.
T Consensus 211 ~~~~~GiYi~~~~il~-~l~~~~~~~~~e~~l~d~i~~l~~~~~v~~~~~~G~w~DIGtpe~~~~a~~~~~ 280 (302)
T PRK13389 211 NLAIVGRYVLSADIWP-LLAKTPPGAGDEIQLTDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEYG 280 (302)
T ss_pred cEEEEEEEEECHHHHH-HHHhCCCCCCCeeeHHHHHHHHHHcCCEEEEEeeeEEEeCCCHHHHHHHHHHHH
Confidence 5799999999999985 56543322 23567899999999999999999999999999999999999874
No 25
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=100.00 E-value=2.5e-36 Score=282.39 Aligned_cols=219 Identities=21% Similarity=0.363 Sum_probs=183.4
Q ss_pred eEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCCCCeEEEEccCCchhHHHHHHhhccCCCCcccCCCc
Q 015713 94 AAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGF 173 (402)
Q Consensus 94 ~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~GI~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~~~~ 173 (402)
+|||||||.||||+|+|..+||||+||+|+ |||+|+++++.++||++|+|+++++.+++.+|+... .++
T Consensus 1 kaiIlaaG~g~Rl~plt~~~pK~llpi~g~-~li~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~-------~~~--- 69 (221)
T cd06422 1 KAMILAAGLGTRMRPLTDTRPKPLVPVAGK-PLIDHALDRLAAAGIRRIVVNTHHLADQIEAHLGDS-------RFG--- 69 (221)
T ss_pred CEEEEcCCCCCccccccCCCCCceeeECCE-EHHHHHHHHHHHCCCCEEEEEccCCHHHHHHHHhcc-------cCC---
Confidence 589999999999999999999999999999 999999999999999999999999999999998641 122
Q ss_pred EEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCccCCccHHHHHHHHH--hCCCcEEEEEEEcC
Q 015713 174 VEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHI--DTKADITVSCVPMD 251 (402)
Q Consensus 174 V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~di~~~l~~h~--~~~aditi~~~~~~ 251 (402)
+.+....+. .+..||+++++.++.+++ .++|+|++||++++.++.++++.|. ..++++++...+.+
T Consensus 70 ~~i~~~~~~------~~~~g~~~~l~~~~~~~~------~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (221)
T cd06422 70 LRITISDEP------DELLETGGGIKKALPLLG------DEPFLVVNGDILWDGDLAPLLLLHAWRMDALLLLLPLVRNP 137 (221)
T ss_pred ceEEEecCC------CcccccHHHHHHHHHhcC------CCCEEEEeCCeeeCCCHHHHHHHHHhccCCCceEEEEEEcC
Confidence 333332221 024699999999998874 3789999999999999999999998 46666777666654
Q ss_pred CCCCCcceEEEECCCCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEehHHHHHHHHhhCCCCCch
Q 015713 252 DCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDF 331 (402)
Q Consensus 252 ~~~~~~~g~v~iD~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~~~~l~~ll~~~~~~~~d~ 331 (402)
+ ...||.+.+|++|+|.++.|||.. +++++|+|+|++++|..+.+. ...
T Consensus 138 ~--~~~~g~v~~d~~~~v~~~~~~~~~------------------------~~~~~Giyi~~~~~l~~l~~~-----~~~ 186 (221)
T cd06422 138 G--HNGVGDFSLDADGRLRRGGGGAVA------------------------PFTFTGIQILSPELFAGIPPG-----KFS 186 (221)
T ss_pred C--CCCcceEEECCCCcEeecccCCCC------------------------ceEEEEEEEEcHHHHhhCCcC-----ccc
Confidence 3 678899999988999999988742 468999999999999865432 234
Q ss_pred hhccHHhhhcCCcEEEEEEcCeEEecCCHHHHHHH
Q 015713 332 GSEIIPASVKDHNVQAFLFNDYWEDIGTIKSFFMP 366 (402)
Q Consensus 332 ~~~ii~~li~~~~v~a~~~~g~w~DIgtp~d~~~A 366 (402)
+.++++.+++++++.+|.++|||.|||||++|.+|
T Consensus 187 ~~d~~~~l~~~~~~~~~~~~g~w~di~t~~~~~~a 221 (221)
T cd06422 187 LNPLWDRAIAAGRLFGLVYDGLWFDVGTPERLLAA 221 (221)
T ss_pred HHHHHHHHHHcCCeEEEecCCEEEcCCCHHHHhhC
Confidence 57899999999999999999999999999999875
No 26
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=100.00 E-value=5.7e-36 Score=286.33 Aligned_cols=244 Identities=19% Similarity=0.302 Sum_probs=192.6
Q ss_pred EEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCCCCeEEEEccCCchhHHHHHHhhccCCCCcc--cCCC
Q 015713 95 AIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVN--FGDG 172 (402)
Q Consensus 95 AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~GI~~IiVv~~~~~~~i~~~l~~~y~~~~g~~--~~~~ 172 (402)
|||||||.||||+|+|..+||||+||+|+ |||+|+++.+..+||++|+|+++|..+++.+|+.+.+.++...+ +..+
T Consensus 1 aiilaaG~g~Rl~plt~~~pK~llpv~~~-p~i~~~~~~~~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 79 (253)
T cd02524 1 VVILAGGLGTRLSEETELKPKPMVEIGGR-PILWHIMKIYSHYGHNDFILCLGYKGHVIKEYFLNYFLHNSDVTIDLGTN 79 (253)
T ss_pred CEEEecCCccccCCccCCCCceEEEECCE-EHHHHHHHHHHhCCCceEEEECCCCHHHHHHHHHhhhhhcCceeEeeccc
Confidence 69999999999999999999999999999 89999999999999999999999999999999875321111111 1111
Q ss_pred cEEEEecccCCCc---CCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCccCCccHHHHHHHHHhCCCcEEEEEEE
Q 015713 173 FVEVLAATQTPGE---AGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVP 249 (402)
Q Consensus 173 ~V~vl~~~q~~~~---~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~di~~~l~~h~~~~aditi~~~~ 249 (402)
.+.++.+....-. .......||++|++++..++. ..++|+|++||++++.++.++++.|...++++|+++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~t~~al~~a~~~~~-----~~~~~lv~~gD~i~~~dl~~ll~~h~~~~~~~tl~~~~ 154 (253)
T cd02524 80 RIELHNSDIEDWKVTLVDTGLNTMTGGRLKRVRRYLG-----DDETFMLTYGDGVSDVNINALIEFHRSHGKLATVTAVH 154 (253)
T ss_pred ceeeecccccccceeecccCcccccHHHHHHHHHhcC-----CCCeEEEEcCCEEECCCHHHHHHHHHHcCCCEEEEEec
Confidence 1222221100000 000012579999999998873 12789999999999999999999999999999887763
Q ss_pred cCCCCCCcceEEEECCCCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEehHHHHHHHHhhCCCCC
Q 015713 250 MDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSN 329 (402)
Q Consensus 250 ~~~~~~~~~g~v~iD~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~~~~l~~ll~~~~~~~~ 329 (402)
....||.+.+|++|+|.++.|||... +.++++|+|+|+++++..+ ... ..
T Consensus 155 ----~~~~~g~v~~d~~g~V~~~~ekp~~~----------------------~~~i~~Giyi~~~~l~~~l-~~~---~~ 204 (253)
T cd02524 155 ----PPGRFGELDLDDDGQVTSFTEKPQGD----------------------GGWINGGFFVLEPEVFDYI-DGD---DT 204 (253)
T ss_pred ----CCCcccEEEECCCCCEEEEEECCCCC----------------------CceEEEEEEEECHHHHHhh-ccc---cc
Confidence 25789999999999999999998643 1468899999999998644 322 34
Q ss_pred chhhccHHhhhcCCcEEEEEEcCeEEecCCHHHHHHHHhHhhccc
Q 015713 330 DFGSEIIPASVKDHNVQAFLFNDYWEDIGTIKSFFMPIWPSQNSL 374 (402)
Q Consensus 330 d~~~~ii~~li~~~~v~a~~~~g~w~DIgtp~d~~~A~~~ll~~~ 374 (402)
++..++++.+++++++.+|.++|+|.||||+++|.+|++.+..+.
T Consensus 205 ~~~~d~l~~li~~~~v~~~~~~g~w~~I~t~~~~~~~~~~~~~~~ 249 (253)
T cd02524 205 VFEREPLERLAKDGELMAYKHTGFWQCMDTLRDKQTLEELWNSGK 249 (253)
T ss_pred hhhHHHHHHHHhcCCEEEEecCCEEEeCcCHHHHHHHHHHHHcCC
Confidence 567899999999999999999999999999999999998886554
No 27
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=100.00 E-value=2e-35 Score=278.58 Aligned_cols=232 Identities=24% Similarity=0.388 Sum_probs=191.4
Q ss_pred eeEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCCCCeEEEEccCCchhHHHHHHhhccCCCCcccCCC
Q 015713 93 VAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDG 172 (402)
Q Consensus 93 m~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~GI~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~~~ 172 (402)
|+|||||||.|+||+|+|..+||||+||+|+ |||+|++++|.++|+++|+|++++..+.+.+|+...+ .|+..
T Consensus 1 m~avIlAaG~g~Rl~plt~~~pK~l~~i~g~-~li~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~~~------~~~~~ 73 (236)
T cd04189 1 MKGLILAGGKGTRLRPLTYTRPKQLIPVAGK-PIIQYAIEDLREAGIEDIGIVVGPTGEEIKEALGDGS------RFGVR 73 (236)
T ss_pred CeEEEECCCccccccccccCCCceeeEECCc-chHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHhcchh------hcCCe
Confidence 7899999999999999999999999999999 9999999999999999999999999999988885321 22211
Q ss_pred cEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCccCCccHHHHHHHHHhCCCcEEEEEEEcCC
Q 015713 173 FVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDD 252 (402)
Q Consensus 173 ~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~di~~~l~~h~~~~aditi~~~~~~~ 252 (402)
+.++. +. +..||+++++.+..++. .++++|++||++++.++.++++.|.+.++++++++.+.++
T Consensus 74 -i~~~~--~~-------~~~g~~~sl~~a~~~i~------~~~~li~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (236)
T cd04189 74 -ITYIL--QE-------EPLGLAHAVLAARDFLG------DEPFVVYLGDNLIQEGISPLVRDFLEEDADASILLAEVED 137 (236)
T ss_pred -EEEEE--CC-------CCCChHHHHHHHHHhcC------CCCEEEEECCeecCcCHHHHHHHHHhcCCceEEEEEECCC
Confidence 33332 21 23699999999998773 3789999999999999999999999999999999988764
Q ss_pred CCCCcceEEEECCCCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEehHHHHHHHHhhCCC--CCc
Q 015713 253 CRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPL--SND 330 (402)
Q Consensus 253 ~~~~~~g~v~iD~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~~~~l~~ll~~~~~~--~~d 330 (402)
+..||++.+|+ |+|.++.|||.... ..++++|+|+|++++|..+ +...+. ...
T Consensus 138 --~~~~g~~~~d~-~~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~~~~l-~~~~~~~~~~~ 192 (236)
T cd04189 138 --PRRFGVAVVDD-GRIVRLVEKPKEPP---------------------SNLALVGVYAFTPAIFDAI-SRLKPSWRGEL 192 (236)
T ss_pred --cccceEEEEcC-CeEEEEEECCCCCC---------------------CCEEEEEEEEeCHHHHHHH-HhcCCCCCCeE
Confidence 57789888874 59999999986432 2578999999999998654 332221 223
Q ss_pred hhhccHHhhhcCC-cEEEEEEcCeEEecCCHHHHHHHHhHhhc
Q 015713 331 FGSEIIPASVKDH-NVQAFLFNDYWEDIGTIKSFFMPIWPSQN 372 (402)
Q Consensus 331 ~~~~ii~~li~~~-~v~a~~~~g~w~DIgtp~d~~~A~~~ll~ 372 (402)
+..++++.+++++ +|.+|.++++|+|||||+||.+|++.+++
T Consensus 193 ~~~d~~~~~i~~g~~v~~~~~~~~~~~i~t~~dl~~a~~~~l~ 235 (236)
T cd04189 193 EITDAIQWLIDRGRRVGYSIVTGWWKDTGTPEDLLEANRLLLD 235 (236)
T ss_pred EHHHHHHHHHHcCCcEEEEEcCceEEeCCCHHHHHHHHHHHHh
Confidence 4578999999765 69999999999999999999999999885
No 28
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=100.00 E-value=5.1e-35 Score=271.91 Aligned_cols=223 Identities=26% Similarity=0.457 Sum_probs=186.3
Q ss_pred EEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCCCCeEEEEccCCchhHHHHHHhhccCCCCcccCCCcE
Q 015713 95 AIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFV 174 (402)
Q Consensus 95 AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~GI~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~~~~V 174 (402)
|||||||.|+||+|+|..+||+|+||+|+ |||+|+++++.++|+++|+|+++++.+.+.+|+...+ .++. .+
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~i~g~-pli~~~l~~l~~~g~~~v~vv~~~~~~~i~~~~~~~~------~~~~-~~ 72 (223)
T cd06915 1 AVILAGGLGTRLRSVVKDLPKPLAPVAGR-PFLEYLLEYLARQGISRIVLSVGYLAEQIEEYFGDGY------RGGI-RI 72 (223)
T ss_pred CEEecCCcccccCcccCCCCccccEECCc-chHHHHHHHHHHCCCCEEEEEcccCHHHHHHHHcCcc------ccCc-eE
Confidence 69999999999999999999999999999 9999999999999999999999999998888886322 1221 12
Q ss_pred EEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCccCCccHHHHHHHHHhCCCcEEEEEEEcCCCC
Q 015713 175 EVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCR 254 (402)
Q Consensus 175 ~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~di~~~l~~h~~~~aditi~~~~~~~~~ 254 (402)
.+..... ..|++++++.++..++ .++|+|++||+++..++.++++.|.+.++++++++.+.++
T Consensus 73 ~~~~~~~---------~~G~~~~l~~a~~~~~------~~~~lv~~~D~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-- 135 (223)
T cd06915 73 YYVIEPE---------PLGTGGAIKNALPKLP------EDQFLVLNGDTYFDVDLLALLAALRASGADATMALRRVPD-- 135 (223)
T ss_pred EEEECCC---------CCcchHHHHHHHhhcC------CCCEEEEECCcccCCCHHHHHHHHHhCCCcEEEEEEECCC--
Confidence 2322211 3699999999987763 4899999999999999999999998888889988888754
Q ss_pred CCcceEEEECCCCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEehHHHHHHHHhhCCCCCchhhc
Q 015713 255 ASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSE 334 (402)
Q Consensus 255 ~~~~g~v~iD~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~~~~l~~ll~~~~~~~~d~~~~ 334 (402)
...|+.+.+|++|+|..|.|||.... .+++++|+|+|++++|..+... ...++.+
T Consensus 136 ~~~~~~v~~d~~~~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~l~~~~~~----~~~~~~~ 190 (223)
T cd06915 136 ASRYGNVTVDGDGRVIAFVEKGPGAA---------------------PGLINGGVYLLRKEILAEIPAD----AFSLEAD 190 (223)
T ss_pred CCcceeEEECCCCeEEEEEeCCCCCC---------------------CCcEEEEEEEECHHHHhhCCcc----CCChHHH
Confidence 57899999998899999999876431 3678999999999998754322 2345678
Q ss_pred cHHhhhcCCcEEEEEEcCeEEecCCHHHHHHHH
Q 015713 335 IIPASVKDHNVQAFLFNDYWEDIGTIKSFFMPI 367 (402)
Q Consensus 335 ii~~li~~~~v~a~~~~g~w~DIgtp~d~~~A~ 367 (402)
+++.++.+++|.+|.++++|.||||++||++|+
T Consensus 191 ~~~~l~~~~~v~~~~~~~~~~dI~t~~dl~~a~ 223 (223)
T cd06915 191 VLPALVKRGRLYGFEVDGYFIDIGIPEDYARAQ 223 (223)
T ss_pred HHHHHHhcCcEEEEecCCeEEecCCHHHHHhhC
Confidence 999999888999999999999999999999984
No 29
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=100.00 E-value=2.6e-34 Score=266.35 Aligned_cols=217 Identities=30% Similarity=0.566 Sum_probs=182.9
Q ss_pred EEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCCCCeEEEEccCCchhHHHHHHhhccCCCCcccCCCcE
Q 015713 95 AIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFV 174 (402)
Q Consensus 95 AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~GI~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~~~~V 174 (402)
|||||||.|+||+|+|..+||+|+||+|+ |||+|+++++.++|+++|+|+++++.+++.+|+...+ .++. .+
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~v~g~-pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~------~~~~-~i 72 (217)
T cd04181 1 AVILAAGKGTRLRPLTDTRPKPLLPIAGK-PILEYIIERLARAGIDEIILVVGYLGEQIEEYFGDGS------KFGV-NI 72 (217)
T ss_pred CEEecCCccccccccccCCCccccEECCe-eHHHHHHHHHHHCCCCEEEEEeccCHHHHHHHHcChh------hcCc-eE
Confidence 69999999999999999999999999999 9999999999999999999999998888888885321 1221 13
Q ss_pred EEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCccCCccHHHHHHHHHhCCCcEEEEEEEcCCCC
Q 015713 175 EVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCR 254 (402)
Q Consensus 175 ~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~di~~~l~~h~~~~aditi~~~~~~~~~ 254 (402)
.++. +. ...|++++++.++.++ ..++|+|++||++++.++.++++.|.++++++++++.+.+ .
T Consensus 73 ~~~~--~~-------~~~g~~~al~~~~~~~------~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 135 (217)
T cd04181 73 EYVV--QE-------EPLGTAGAVRNAEDFL------GDDDFLVVNGDVLTDLDLSELLRFHREKGADATIAVKEVE--D 135 (217)
T ss_pred EEEe--CC-------CCCccHHHHHHhhhhc------CCCCEEEEECCeecCcCHHHHHHHHHhcCCCEEEEEEEcC--C
Confidence 3333 21 1259999999998776 2489999999999999999999999999999999998876 4
Q ss_pred CCcceEEEECCCCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEehHHHHHHHHhhCCCCCchhhc
Q 015713 255 ASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSE 334 (402)
Q Consensus 255 ~~~~g~v~iD~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~~~~l~~ll~~~~~~~~d~~~~ 334 (402)
+..||.+.+|++|+|.+|.|||.... ..++++|+|+|++++|. +++.......++..+
T Consensus 136 ~~~~~~v~~d~~~~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~~~-~l~~~~~~~~~~~~~ 193 (217)
T cd04181 136 PSRYGVVELDDDGRVTRFVEKPTLPE---------------------SNLANAGIYIFEPEILD-YIPEILPRGEDELTD 193 (217)
T ss_pred CCcceEEEEcCCCcEEEEEECCCCCC---------------------CCEEEEEEEEECHHHHH-hhhhcCCcccccHHH
Confidence 78899999998899999999987542 25789999999999885 555433234567889
Q ss_pred cHHhhhcCCcEEEEEEcCeEEecC
Q 015713 335 IIPASVKDHNVQAFLFNDYWEDIG 358 (402)
Q Consensus 335 ii~~li~~~~v~a~~~~g~w~DIg 358 (402)
+++.++++++|++|.++|+|+|||
T Consensus 194 ~~~~l~~~~~v~~~~~~g~w~dig 217 (217)
T cd04181 194 AIPLLIEEGKVYGYPVDGYWLDIG 217 (217)
T ss_pred HHHHHHhcCCEEEEEcCCEEecCC
Confidence 999999999999999999999997
No 30
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.3e-34 Score=272.49 Aligned_cols=251 Identities=21% Similarity=0.272 Sum_probs=208.3
Q ss_pred CCCeeEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCCCCeEEEEccCCchhHHHHHHhhccCCCCccc
Q 015713 90 PKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNF 169 (402)
Q Consensus 90 ~~~m~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~GI~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~ 169 (402)
++..+|||+|||.||||.|.|+..||.|+||-++ |+|+|+++.+.++||++|++||+.++..|.+|+...|.+.+.+.-
T Consensus 2 ~~irKAViPaAGlGTRfLPATKaiPKEMLPIvdK-P~IqYiVeEa~~aGIe~i~iVTgr~K~~IeDhFD~s~ELE~~L~~ 80 (291)
T COG1210 2 MKIRKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PLIQYIVEEAVAAGIEEILIVTGRGKRAIEDHFDTSYELENTLEK 80 (291)
T ss_pred CcccEEEEEccCcccccccccccCchhhccccCc-hhHHHHHHHHHHcCCCEEEEEecCCcchHHHhCcCcHHHHHHHHH
Confidence 4567999999999999999999999999999999 999999999999999999999999999999999765443211100
Q ss_pred ----------C--CCcEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCccCCc---cHHHHHH
Q 015713 170 ----------G--DGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRM---DYTEFLQ 234 (402)
Q Consensus 170 ----------~--~~~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~---di~~~l~ 234 (402)
. ...+.+.+..|.. +.|.+|||++|..++ ++|||.|+.||.++.. .+.++++
T Consensus 81 ~~K~~~L~~v~~i~~~~~i~~vRQ~e-------~~GLGhAVl~A~~~v------g~EpFaVlL~Ddl~~~~~~~l~qmi~ 147 (291)
T COG1210 81 RGKRELLEEVRSIPPLVTISFVRQKE-------PLGLGHAVLCAKPFV------GDEPFAVLLPDDLVDSEKPCLKQMIE 147 (291)
T ss_pred hCHHHHHHHHHhcccCceEEEEecCC-------CCcchhHHHhhhhhc------CCCceEEEeCCeeecCCchHHHHHHH
Confidence 0 1124455555643 579999999999988 4699999999998864 3688999
Q ss_pred HHHhCCCcEEEEEEEcCCCCCCcceEEE----ECCC-CcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeE
Q 015713 235 KHIDTKADITVSCVPMDDCRASDYGLMK----IDRS-GQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGV 309 (402)
Q Consensus 235 ~h~~~~aditi~~~~~~~~~~~~~g~v~----iD~~-g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Gi 309 (402)
.+.+.+..+ +++.+++.+..+.||++. ++.+ .+|.++.|||...+.+ ++++.+|.
T Consensus 148 ~ye~~g~sv-i~v~ev~~e~v~kYGvi~~g~~~~~~~~~v~~~VEKP~~~~AP-------------------Snlai~GR 207 (291)
T COG1210 148 LYEETGGSV-IGVEEVPPEDVSKYGVIDPGEPVEKGVYKVKGMVEKPKPEEAP-------------------SNLAIVGR 207 (291)
T ss_pred HHHHhCCcE-EEEEECCHHHCcccceEecCccccCCeEEEEEEEECCCCCCCC-------------------cceeeeee
Confidence 998888754 788888877799999997 4443 5899999999877654 58999999
Q ss_pred EEEehHHHHHHHHhhCCCC--CchhhccHHhhhcCCcEEEEEEcCeEEecCCHHHHHHHHhHhhcccC
Q 015713 310 YLFRTDVLLNLLRSSYPLS--NDFGSEIIPASVKDHNVQAFLFNDYWEDIGTIKSFFMPIWPSQNSLR 375 (402)
Q Consensus 310 yvf~~~~l~~ll~~~~~~~--~d~~~~ii~~li~~~~v~a~~~~g~w~DIgtp~d~~~A~~~ll~~~~ 375 (402)
|+|+|++|+ +|++..++. .-.++|.+..+++...|++|.+.|..+|+|++..|.+|+..+..+.+
T Consensus 208 Yil~p~IFd-~L~~~~~G~ggEiQLTDai~~L~~~~~v~a~~~~GkryD~G~k~Gyi~a~v~~~l~~~ 274 (291)
T COG1210 208 YVLTPEIFD-ILEETKPGAGGEIQLTDAIKKLLKKEPVLAYVFEGKRYDCGSKLGYIKANVEFALRRP 274 (291)
T ss_pred eecCHHHHH-HHhhCCCCCCCEeeHHHHHHHHHhhCcEEEEEecccEEccCCcccHHHHHHHHHhhCh
Confidence 999999997 556654443 33578999999999999999999999999999999999999987654
No 31
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=100.00 E-value=2e-33 Score=261.93 Aligned_cols=219 Identities=25% Similarity=0.471 Sum_probs=178.4
Q ss_pred EEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCCCCeEEEEccCCchhHHHHHHhhccCCCCcccCCCcE
Q 015713 95 AIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFV 174 (402)
Q Consensus 95 AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~GI~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~~~~V 174 (402)
|||||||.|+||+|+|..+||+|+|++|+ |||+|++++|.++|+++|+|++++..+++.+|+.+. ..++.. +
T Consensus 1 ~vIlaaG~g~R~~plt~~~pK~ll~~~g~-pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~------~~~~~~-i 72 (220)
T cd06426 1 VVIMAGGKGTRLRPLTENTPKPMLKVGGK-PILETIIDRFIAQGFRNFYISVNYLAEMIEDYFGDG------SKFGVN-I 72 (220)
T ss_pred CEEecCCCccccCcccCCCCCccCeECCc-chHHHHHHHHHHCCCcEEEEECccCHHHHHHHHCCc------cccCcc-E
Confidence 69999999999999999999999999999 999999999999999999999999988888887531 122321 3
Q ss_pred EEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCccCCccHHHHHHHHHhCCCcEEEEEEEcCCCC
Q 015713 175 EVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCR 254 (402)
Q Consensus 175 ~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~di~~~l~~h~~~~aditi~~~~~~~~~ 254 (402)
.++. +. ...||++++..+... ..++|+|++||++++.++.++++.|...++++++++.+...
T Consensus 73 ~~~~--~~-------~~~g~~~~l~~~~~~-------~~~~~lv~~~D~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~-- 134 (220)
T cd06426 73 SYVR--ED-------KPLGTAGALSLLPEK-------PTDPFLVMNGDILTNLNYEHLLDFHKENNADATVCVREYEV-- 134 (220)
T ss_pred EEEE--CC-------CCCcchHHHHHHHhh-------CCCCEEEEcCCEeeccCHHHHHHHHHhcCCCEEEEEEEcCC--
Confidence 3332 21 135899999766533 25899999999999999999999999988999988877543
Q ss_pred CCcceEEEECCCCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEehHHHHHHHHhhCCCCCchhhc
Q 015713 255 ASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSE 334 (402)
Q Consensus 255 ~~~~g~v~iD~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~~~~l~~ll~~~~~~~~d~~~~ 334 (402)
...||++.+|+ |+|.+|.|||... .++++|+|+|+++++..+ +. .....+.+
T Consensus 135 ~~~~g~~~~d~-~~v~~~~ek~~~~-----------------------~~~~~Giy~~~~~~~~~i-~~---~~~~~l~~ 186 (220)
T cd06426 135 QVPYGVVETEG-GRITSIEEKPTHS-----------------------FLVNAGIYVLEPEVLDLI-PK---NEFFDMPD 186 (220)
T ss_pred CCcceEEEECC-CEEEEEEECCCCC-----------------------CeEEEEEEEEcHHHHhhc-CC---CCCcCHHH
Confidence 46799999985 8999999987642 468899999999998754 21 22223578
Q ss_pred cHHhhhcCC-cEEEEEEcCeEEecCCHHHHHHHH
Q 015713 335 IIPASVKDH-NVQAFLFNDYWEDIGTIKSFFMPI 367 (402)
Q Consensus 335 ii~~li~~~-~v~a~~~~g~w~DIgtp~d~~~A~ 367 (402)
+++.+++++ ++.+|.++|+|.|||||+||.+||
T Consensus 187 ~~~~~i~~~~~i~~~~~~~~w~~igt~~dl~~a~ 220 (220)
T cd06426 187 LIEKLIKEGKKVGVFPIHEYWLDIGRPEDYEKAN 220 (220)
T ss_pred HHHHHHHCCCcEEEEEeCCeEEeCCCHHHHHhhC
Confidence 899998875 699999999999999999999986
No 32
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.98 E-value=3.4e-31 Score=249.07 Aligned_cols=222 Identities=20% Similarity=0.267 Sum_probs=169.7
Q ss_pred EEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCCCCeEEEEccCCchhHHHHHHhhccCCCCcccCCCcE
Q 015713 95 AIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFV 174 (402)
Q Consensus 95 AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~GI~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~~~~V 174 (402)
.||||||.||||+|+|..+||||+||+|+ |||+|+++++.++|+++|+|++++.. ....++.+.+.. .. . .+
T Consensus 1 ~iIlAaG~g~Rl~plt~~~pK~ll~i~g~-pli~~~l~~l~~~g~~~ivvv~~~~~-~~~~~~~~~~~~-~~---~--~~ 72 (231)
T cd04183 1 IIIPMAGLGSRFKKAGYTYPKPLIEVDGK-PMIEWVIESLAKIFDSRFIFICRDEH-NTKFHLDESLKL-LA---P--NA 72 (231)
T ss_pred CEEECCcCCccccccCCCCCceeeEECCE-EHHHHHHHhhhccCCceEEEEEChHH-hhhhhHHHHHHH-hC---C--CC
Confidence 48999999999999999999999999999 99999999999999999999997432 222333322210 00 1 12
Q ss_pred EEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCccCCccHHHHHHHHHhCCCcEEEEEEEcCCCC
Q 015713 175 EVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCR 254 (402)
Q Consensus 175 ~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~di~~~l~~h~~~~aditi~~~~~~~~~ 254 (402)
.++...+. ..||+++++++...+. ..++|+|++||++++.++.++++.|.+.+.++++++...+
T Consensus 73 ~i~~~~~~--------~~g~~~~l~~a~~~l~-----~~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~i~~~~~~--- 136 (231)
T cd04183 73 TVVELDGE--------TLGAACTVLLAADLID-----NDDPLLIFNCDQIVESDLLAFLAAFRERDLDGGVLTFFSS--- 136 (231)
T ss_pred EEEEeCCC--------CCcHHHHHHHHHhhcC-----CCCCEEEEecceeeccCHHHHHHHhhccCCceEEEEEeCC---
Confidence 33222111 2699999999988773 2478999999999999999999988887777777766652
Q ss_pred CCcceEEEECCCCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEehH-HHHHHHHhhC-----CCC
Q 015713 255 ASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTD-VLLNLLRSSY-----PLS 328 (402)
Q Consensus 255 ~~~~g~v~iD~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~~~-~l~~ll~~~~-----~~~ 328 (402)
...||.+.+|++|+|++|.||+.. +..+++|+|+|+++ .|.++++... +..
T Consensus 137 ~~~~~~v~~d~~~~v~~~~ek~~~-----------------------~~~~~~Giy~~~~~~~~~~~l~~~~~~~~~~~~ 193 (231)
T cd04183 137 HPRWSYVKLDENGRVIETAEKEPI-----------------------SDLATAGLYYFKSGSLFVEAAKKMIRKDDSVNG 193 (231)
T ss_pred CCCeEEEEECCCCCEEEeEEcCCC-----------------------CCccEeEEEEECcHHHHHHHHHHHHhhcccccC
Confidence 467999999999999999988532 23678999999998 5555554321 112
Q ss_pred CchhhccHHhhhcCC-cEEEEEE-cCeEEecCCHHHH
Q 015713 329 NDFGSEIIPASVKDH-NVQAFLF-NDYWEDIGTIKSF 363 (402)
Q Consensus 329 ~d~~~~ii~~li~~~-~v~a~~~-~g~w~DIgtp~d~ 363 (402)
..+..++++.+++++ +|.+|.+ +++|.|||||+||
T Consensus 194 ~~~~~d~i~~~~~~g~~v~~~~~~~~~w~di~t~~dl 230 (231)
T cd04183 194 EFYISPLYNELILDGKKVGIYLIDKDDYHSFGTPEDL 230 (231)
T ss_pred cEEEhHHHHHHHHcCCEEEEEEeccccEEEcCChHhc
Confidence 234579999999876 6999999 6899999999997
No 33
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=99.98 E-value=2.8e-31 Score=249.50 Aligned_cols=222 Identities=18% Similarity=0.255 Sum_probs=172.7
Q ss_pred EEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCCCCeEEEEccCCchhHHHHHHhhccCCCCcccCCCcE
Q 015713 95 AIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFV 174 (402)
Q Consensus 95 AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~GI~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~~~~V 174 (402)
|||||||.|+||+|+|..+||||+|++|+ |||+|+++++.++|+++|+|+++++.+++.+|+... .+ +
T Consensus 1 aiIlAaG~g~Rl~~lt~~~pK~l~~~~g~-~li~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~--------~~---~ 68 (229)
T cd02523 1 AIILAAGRGSRLRPLTEDRPKCLLEINGK-PLLERQIETLKEAGIDDIVIVTGYKKEQIEELLKKY--------PN---I 68 (229)
T ss_pred CEEEeccCccccchhhCCCCceeeeECCE-EHHHHHHHHHHHCCCceEEEEeccCHHHHHHHHhcc--------CC---e
Confidence 69999999999999999999999999999 999999999999999999999999999998887521 11 4
Q ss_pred EEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCccCCccHHHHHHHHHhCCCcEEEEEEEcCCCC
Q 015713 175 EVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCR 254 (402)
Q Consensus 175 ~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~di~~~l~~h~~~~aditi~~~~~~~~~ 254 (402)
.++...+.. ..|++++++.+..++ .++|+|++||++++. ++++.|.+.++++++++.+..+..
T Consensus 69 ~~~~~~~~~-------~~g~~~s~~~~~~~~-------~~~~lv~~~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 131 (229)
T cd02523 69 KFVYNPDYA-------ETNNIYSLYLARDFL-------DEDFLLLEGDVVFDP---SILERLLSSPADNAILVDKKTKEW 131 (229)
T ss_pred EEEeCcchh-------hhCcHHHHHHHHHHc-------CCCEEEEeCCEecCH---HHHHHHHcCCCCCeEEEccCcccc
Confidence 555433211 259999999998776 278999999999866 466777788889998888754433
Q ss_pred CCcceEEEECCCCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEehHHHHHHHHh---hCC--CCC
Q 015713 255 ASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRS---SYP--LSN 329 (402)
Q Consensus 255 ~~~~g~v~iD~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~~~~l~~ll~~---~~~--~~~ 329 (402)
...++.+..| ++++..+.+||.... ....+++|+|+|+++++..+.+. ..+ ...
T Consensus 132 ~~~~~~~~~~-~~~v~~~~~k~~~~~--------------------~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~ 190 (229)
T cd02523 132 EDEYVKDLDD-AGVLLGIISKAKNLE--------------------EIQGEYVGISKFSPEDADRLAEALEELIEAGRVN 190 (229)
T ss_pred cccceeeecC-ccceEeecccCCCcc--------------------hhceEEEeEEEECHHHHHHHHHHHHHHHhccccc
Confidence 4556654443 378999999886542 12578999999999998765432 111 245
Q ss_pred chhhccHHhhhcCCc--EEEEEEcCeEEecCCHHHHHHHH
Q 015713 330 DFGSEIIPASVKDHN--VQAFLFNDYWEDIGTIKSFFMPI 367 (402)
Q Consensus 330 d~~~~ii~~li~~~~--v~a~~~~g~w~DIgtp~d~~~A~ 367 (402)
++++++++.++++.+ ++++.. ++|.|||||+||.+|+
T Consensus 191 ~~~~d~i~~l~~~~~~~v~~~~~-~~w~dI~~~ed~~~a~ 229 (229)
T cd02523 191 LYYEDALQRLISEEGVKVKDISD-GFWYEIDDLEDLERAE 229 (229)
T ss_pred ccHHHHHHHHHhhcCeeEEEcCC-CCEEEeCCHHHHHhhC
Confidence 677899999998444 555555 8999999999999884
No 34
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=99.97 E-value=2.2e-30 Score=239.20 Aligned_cols=199 Identities=51% Similarity=0.838 Sum_probs=160.9
Q ss_pred EEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCCCCeEEEEccCCchhHHHHHHhhccCCCCcccCCCcE
Q 015713 95 AIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFV 174 (402)
Q Consensus 95 AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~GI~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~~~~V 174 (402)
|||||||.||||+|+|..+||||+||+|+||||+|+++++..+|+++|+|++++..+++.+|+.+...++ .+.....+
T Consensus 1 avILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~iivv~~~~~~~i~~~~~~~~~~~--~~~~~~~~ 78 (200)
T cd02508 1 AIILAGGEGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVNSGIRNVGVLTQYKSRSLNDHLGSGKEWD--LDRKNGGL 78 (200)
T ss_pred CEEeCCCCCcccchhhcCCcceeeEECCeeeeHHHHHHHHHHCCCCEEEEEeCCChHHHHHHHhCCCccc--CCCCCCCE
Confidence 6999999999999999999999999999879999999999999999999999999999999986432111 11111125
Q ss_pred EEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCccCCccHHHHHHHHHhCCCcEEEEEEEcCCCC
Q 015713 175 EVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCR 254 (402)
Q Consensus 175 ~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~di~~~l~~h~~~~aditi~~~~~~~~~ 254 (402)
.++...+.. ..++..||++||+.+..++++ ...++|+|++||++++.++.++++.|.++++++|+++.
T Consensus 79 ~~~~~~~~~---~~~~~~Gta~al~~a~~~i~~---~~~~~~lv~~gD~v~~~~~~~~l~~~~~~~~~~t~~~~------ 146 (200)
T cd02508 79 FILPPQQRK---GGDWYRGTADAIYQNLDYIER---SDPEYVLILSGDHIYNMDYREMLDFHIESGADITVVYK------ 146 (200)
T ss_pred EEeCcccCC---CCCcccCcHHHHHHHHHHHHh---CCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEh------
Confidence 555433311 124568999999999998852 13478999999999999999999999998888887665
Q ss_pred CCcceEEEECCCCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEehHHHHHHHHhhC-CCCCchhh
Q 015713 255 ASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSY-PLSNDFGS 333 (402)
Q Consensus 255 ~~~~g~v~iD~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~~~~l~~ll~~~~-~~~~d~~~ 333 (402)
+++|+|+|++++|..+++... .+..++.+
T Consensus 147 --------------------------------------------------~~~g~yi~~~~~~~~~l~~~~~~~~~~~~~ 176 (200)
T cd02508 147 --------------------------------------------------ASMGIYIFSKDLLIELLEEDAADGSHDFGK 176 (200)
T ss_pred --------------------------------------------------hcCEEEEEEHHHHHHHHHHHhccCcchhHH
Confidence 137999999999977776532 22456788
Q ss_pred ccHHhhhcCCcEEEEEEcCeEEec
Q 015713 334 EIIPASVKDHNVQAFLFNDYWEDI 357 (402)
Q Consensus 334 ~ii~~li~~~~v~a~~~~g~w~DI 357 (402)
|+++.++++++|.+|.++|||.||
T Consensus 177 d~i~~l~~~~~v~~~~~~g~w~di 200 (200)
T cd02508 177 DIIPAMLKKLKIYAYEFNGYWADI 200 (200)
T ss_pred HHHHHHhccCcEEEEEeCCeEecC
Confidence 999999999999999999999997
No 35
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.97 E-value=5.3e-30 Score=265.14 Aligned_cols=237 Identities=20% Similarity=0.268 Sum_probs=189.8
Q ss_pred CCCeeEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCCCCeEEEEccCCchhHHHHHHhhccCCCCccc
Q 015713 90 PKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNF 169 (402)
Q Consensus 90 ~~~m~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~GI~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~ 169 (402)
|++++|||||||.|+||++ .+||||+|++|+ |||+|+++++.++|+++|+|++++..+++.+|+.+..
T Consensus 1 m~~~~avIlAaG~g~Rl~~---~~pK~l~pi~g~-pli~~~l~~l~~~gi~~iiiv~~~~~~~i~~~~~~~~-------- 68 (459)
T PRK14355 1 MNNLAAIILAAGKGTRMKS---DLVKVMHPLAGR-PMVSWPVAAAREAGAGRIVLVVGHQAEKVREHFAGDG-------- 68 (459)
T ss_pred CCcceEEEEcCCCCcccCC---CCCceeceeCCc-cHHHHHHHHHHhcCCCeEEEEECCCHHHHHHHhccCC--------
Confidence 5678999999999999974 689999999999 9999999999999999999999999888888874210
Q ss_pred CCCcEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCc--cCCccHHHHHHHHHhCCCcEEEEE
Q 015713 170 GDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH--LYRMDYTEFLQKHIDTKADITVSC 247 (402)
Q Consensus 170 ~~~~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~--l~~~di~~~l~~h~~~~aditi~~ 247 (402)
.+.++...+ .+||++++++++.++++ ..++|+|++||+ +...++.++++.|.+.++++++..
T Consensus 69 ---~i~~~~~~~---------~~Gt~~al~~a~~~l~~----~~~~vlv~~gD~p~~~~~~i~~l~~~~~~~~~~~~v~~ 132 (459)
T PRK14355 69 ---DVSFALQEE---------QLGTGHAVACAAPALDG----FSGTVLILCGDVPLLRAETLQGMLAAHRATGAAVTVLT 132 (459)
T ss_pred ---ceEEEecCC---------CCCHHHHHHHHHHHhhc----cCCcEEEEECCccCcCHHHHHHHHHHHHhcCCcEEEEE
Confidence 144433221 36999999999998852 247899999998 446788999999988888888888
Q ss_pred EEcCCCCCCcceEEEECCCCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEehHHHHHHHHhhCCC
Q 015713 248 VPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPL 327 (402)
Q Consensus 248 ~~~~~~~~~~~g~v~iD~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~~~~l~~ll~~~~~~ 327 (402)
.+.++ +..||.+.+|++|+|.+|.|||..... + ...+++++|+|+|++++|.++++...+.
T Consensus 133 ~~~~~--~~~~g~v~~d~~g~v~~~~ek~~~~~~---------------~--~~~~~~~~Giy~~~~~~l~~~l~~~~~~ 193 (459)
T PRK14355 133 ARLEN--PFGYGRIVRDADGRVLRIVEEKDATPE---------------E--RSIREVNSGIYCVEAAFLFDAIGRLGND 193 (459)
T ss_pred EEcCC--CCcCCEEEEcCCCCEEEEEEcCCCChh---------------H--hhccEEEEEEEEEeHHHHHHHHHHcCcc
Confidence 77654 567999999988999999998743211 0 0136789999999999876666543321
Q ss_pred ---CCchhhccHHhhhcCC-cEEEEEEcCe--EEecCCHHHHHHHHhHhhcc
Q 015713 328 ---SNDFGSEIIPASVKDH-NVQAFLFNDY--WEDIGTIKSFFMPIWPSQNS 373 (402)
Q Consensus 328 ---~~d~~~~ii~~li~~~-~v~a~~~~g~--w~DIgtp~d~~~A~~~ll~~ 373 (402)
...+++++++.+++++ ++.+|.+++| |.|||||++|++|++.++..
T Consensus 194 ~~~~e~~~~d~i~~l~~~g~~v~~~~~~~~~~~~~i~~~~~~~~a~~~l~~~ 245 (459)
T PRK14355 194 NAQGEYYLTDIVAMAAAEGLRCLAFPVADPDEIMGVNDRAQLAEAARVLRRR 245 (459)
T ss_pred ccCCceeHHHHHHHHHHCCCeEEEEEcCCHHHhcCCCCHHHHHHHHHHHHHH
Confidence 2345789999999886 6999999987 99999999999998766643
No 36
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.9e-30 Score=245.07 Aligned_cols=242 Identities=24% Similarity=0.378 Sum_probs=205.2
Q ss_pred CeeEEEEcCC--CCCcCCCCCCCCCccceecCCcchHHHHHHHHhHh-CCCCeEEEEccCCchhHHHHHHhhccCCCCcc
Q 015713 92 NVAAIILGGG--AGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCIN-SGFNKIFIMTQFNSFSLNRHLARSYNLGNGVN 168 (402)
Q Consensus 92 ~m~AIILAaG--~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~-~GI~~IiVv~~~~~~~i~~~l~~~y~~~~g~~ 168 (402)
+++||||.|| +||||+||+-+.||||+||+|. |||+|.|+.|.+ .|..+|+++.-|.++.+.+++.+.. + .
T Consensus 2 ~~~AVIlVGGP~kGTRFRPLSf~vPKPLfpiaG~-pmI~Hhi~ac~qi~~l~eI~LvGFy~e~~f~~fis~~~---~--e 75 (407)
T KOG1460|consen 2 KVKAVILVGGPQKGTRFRPLSFNVPKPLFPIAGV-PMIHHHISACKQISGLAEILLVGFYEERVFTDFISAIQ---Q--E 75 (407)
T ss_pred ceEEEEEecCCCCCccccccccCCCCCccccCCc-chhhhhHHHHhcccchhheeEEecccchHHHHHHHHHH---h--h
Confidence 5789999999 6999999999999999999999 999999999998 7999999999999888888887532 1 2
Q ss_pred cCCCcEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCccCCccHHHHHHHHHhCCCcEEEEEE
Q 015713 169 FGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCV 248 (402)
Q Consensus 169 ~~~~~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~di~~~l~~h~~~~aditi~~~ 248 (402)
|.. .|+++.+.. +.||+++|+.+++.+-. ...+.|+++++|.-+...+.++++.|+..+...|+++.
T Consensus 76 ~~~-pvrYL~E~~---------plGtaGgLyhFrdqIl~---g~ps~vFvlnaDVCcsfPl~~ml~ahr~~g~~~tll~t 142 (407)
T KOG1460|consen 76 FKV-PVRYLREDN---------PLGTAGGLYHFRDQILA---GSPSAVFVLNADVCCSFPLQDMLEAHRRYGGIGTLLVT 142 (407)
T ss_pred ccc-chhhhccCC---------CCCcccceeehhhHHhc---CCCceEEEEecceecCCcHHHHHHHHhhcCCceEEEEE
Confidence 222 266666554 46999999999988742 36789999999999999999999999999999999999
Q ss_pred EcCCCCCCcceEEEEC-CCCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEehHHHHHHHH---hh
Q 015713 249 PMDDCRASDYGLMKID-RSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLR---SS 324 (402)
Q Consensus 249 ~~~~~~~~~~g~v~iD-~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~~~~l~~ll~---~~ 324 (402)
.+..+.+++||-+.-| ..|+|+++.|||..-. +.++++|+|+|++++|+.+-+ +.
T Consensus 143 kvs~e~asnfG~lV~dP~t~evlHYveKPsTfv---------------------Sd~InCGvYlF~~eif~~i~~v~~q~ 201 (407)
T KOG1460|consen 143 KVSREQASNFGCLVEDPSTGEVLHYVEKPSTFV---------------------SDIINCGVYLFTPEIFNAIAEVYRQR 201 (407)
T ss_pred EecHhHhhccCeeeecCCcCceEEeecCcchhh---------------------hcccceeEEEecHHHHHHHHHHHHHH
Confidence 9988889999999888 4699999999998643 478999999999999875421 11
Q ss_pred -------------CCCCCch---hhccHHhhhcCCcEEEEEEcCeEEecCCHHHHHHHHhHhhcc
Q 015713 325 -------------YPLSNDF---GSEIIPASVKDHNVQAFLFNDYWEDIGTIKSFFMPIWPSQNS 373 (402)
Q Consensus 325 -------------~~~~~d~---~~~ii~~li~~~~v~a~~~~g~w~DIgtp~d~~~A~~~ll~~ 373 (402)
.+...|| ..|++..++..+++|+|...++|..|.|+.+-+.|+..++++
T Consensus 202 ~~~~~~~~~~~~l~~g~~d~irLeqDvlspLag~k~lY~y~t~~fW~QiKtagsal~as~lYLs~ 266 (407)
T KOG1460|consen 202 QDLLEVEKDLPLLQPGPADFIRLEQDVLSPLAGSKQLYAYETTDFWSQIKTAGSALYASRLYLSQ 266 (407)
T ss_pred HhhhhhhhcccccCCCccceEEeechhhhhhcCCCceEEEecccHHHHhccccceeehhhhHHHH
Confidence 1112333 479999999999999999999999999999999999999873
No 37
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.97 E-value=1.3e-29 Score=237.01 Aligned_cols=207 Identities=17% Similarity=0.228 Sum_probs=154.0
Q ss_pred eeEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCCCCeEEEEccCCchhHHHHHHhhccCCCCcccCCC
Q 015713 93 VAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDG 172 (402)
Q Consensus 93 m~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~GI~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~~~ 172 (402)
++|||||||.|+||+|+|..+||||+||+|+ |||+|++++|.++||++|+|+++++.+++.+|+.+.+..+ ..+...
T Consensus 1 ~~aiIla~G~g~Rl~plt~~~pK~llpi~g~-piI~~~l~~l~~~Gi~~I~iv~~~~~~~i~~~l~~~~~~~--~~~~~~ 77 (217)
T cd04197 1 LQAVVLADSFNRRFRPLTKEKPRCLLPLANV-PLIDYTLEFLALNGVEEVFVFCCSHSDQIKEYIEKSKWSK--PKSSLM 77 (217)
T ss_pred CeEEEEcCCCcccccccccCCCceeeEECCE-ehHHHHHHHHHHCCCCeEEEEeCCCHHHHHHHHhhccccc--cccCcc
Confidence 4799999999999999999999999999999 9999999999999999999999999999999997543111 111011
Q ss_pred cEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCccCCccHHHHHHHHHh-----CCCcEEEEE
Q 015713 173 FVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHID-----TKADITVSC 247 (402)
Q Consensus 173 ~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~di~~~l~~h~~-----~~aditi~~ 247 (402)
.+.++. +. ...|++++++..... ....++|++++||++++.++.++++.|++ +++++|+++
T Consensus 78 ~i~~~~--~~-------~~~~~~~al~~~~~~-----~~~~~~flv~~gD~i~~~dl~~~l~~h~~~~~~~~~a~~t~~~ 143 (217)
T cd04197 78 IVIIIM--SE-------DCRSLGDALRDLDAK-----GLIRGDFILVSGDVVSNIDLKEILEEHKERRKKDKNAIMTMVL 143 (217)
T ss_pred eEEEEe--CC-------CcCccchHHHHHhhc-----cccCCCEEEEeCCeeeccCHHHHHHHHHHhhccccCceEEEEE
Confidence 234332 21 135788888754221 01247899999999999999999999987 488999998
Q ss_pred EEcCCCC----CCcceEEEECCC-CcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEehHHH
Q 015713 248 VPMDDCR----ASDYGLMKIDRS-GQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVL 317 (402)
Q Consensus 248 ~~~~~~~----~~~~g~v~iD~~-g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~~~~l 317 (402)
.++++.. ..+++++.+|++ ++|+.|.|||..+.....+++.+++.-.+ ......++.++|+|+|++++|
T Consensus 144 ~~~~~~~~~~~~~~~~vv~~d~~~~~v~~~~ekp~~~~~~~~~~~~~~~~~~~-~~~i~~~l~d~~iYi~~~~vl 217 (217)
T cd04197 144 KEASPPHRTRRTGEEFVIAVDPKTSRLLHYEELPGSKYRSITDLPSELLGSNS-EVEIRHDLLDCHIDICSPDVL 217 (217)
T ss_pred EeCCCccccccCCCceEEEEcCCCCcEEEEecccCCCCccccccCHHHhcCCC-cEEEECCceecCEEEeCCCCC
Confidence 8876543 224678888866 89999999998765333233333332111 112236889999999999864
No 38
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.96 E-value=2.1e-28 Score=254.81 Aligned_cols=239 Identities=18% Similarity=0.226 Sum_probs=187.3
Q ss_pred CCCeeEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCCCCeEEEEccCCchhHHHHHHhhccCCCCccc
Q 015713 90 PKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNF 169 (402)
Q Consensus 90 ~~~m~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~GI~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~ 169 (402)
++.+.|||||||.||||+| .+||+|+|++|+ |||+|+++++..+|+++++|++++..+.+.+++....
T Consensus 2 ~~~~~avILAaG~gtRm~~---~~pK~llpi~gk-pli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~~-------- 69 (482)
T PRK14352 2 PRPTAVIVLAAGAGTRMRS---DTPKVLHTLAGR-SMLGHVLHAAAGLAPQHLVVVVGHDRERVAPAVAELA-------- 69 (482)
T ss_pred CCCceEEEEcCCCCCcCCC---CCCceeceeCCc-cHHHHHHHHHHhcCCCcEEEEECCCHHHHHHHhhccC--------
Confidence 4567899999999999986 589999999999 9999999999999999999999998888877774211
Q ss_pred CCCcEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCc-cC-CccHHHHHHHHHhCCCcEEEEE
Q 015713 170 GDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-LY-RMDYTEFLQKHIDTKADITVSC 247 (402)
Q Consensus 170 ~~~~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~-l~-~~di~~~l~~h~~~~aditi~~ 247 (402)
. .+.++... +..||+++++.++.++.+ ...++|+|++||+ ++ ..++.++++.|.+.++++++++
T Consensus 70 -~-~~~~~~~~---------~~~Gt~~si~~al~~l~~---~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~~~~~v~~ 135 (482)
T PRK14352 70 -P-EVDIAVQD---------EQPGTGHAVQCALEALPA---DFDGTVVVTAGDVPLLDGETLADLVATHTAEGNAVTVLT 135 (482)
T ss_pred -C-ccEEEeCC---------CCCCcHHHHHHHHHHhcc---CCCCeEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEE
Confidence 1 13333221 236999999999988742 1347799999998 44 4678999999988888888887
Q ss_pred EEcCCCCCCcceEEEECCCCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEehHHHHHHHHhhCCC
Q 015713 248 VPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPL 327 (402)
Q Consensus 248 ~~~~~~~~~~~g~v~iD~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~~~~l~~ll~~~~~~ 327 (402)
.+.++ +..||.+..|++|+|.+|.|||.....+ .....+++|+|+|++++|..+++...+.
T Consensus 136 ~~~~~--p~~yg~~~~~~~g~V~~~~EKp~~~~~~-----------------~~~~~~~~Giy~f~~~~l~~~~~~~~~~ 196 (482)
T PRK14352 136 TTLDD--PTGYGRILRDQDGEVTAIVEQKDATPSQ-----------------RAIREVNSGVYAFDAAVLRSALARLSSD 196 (482)
T ss_pred eecCC--CCCCCEEEECCCCCEEEEEECCCCCHHH-----------------hhcceEEEEEEEEEHHHHHHHHHhhCcc
Confidence 77664 6789998888889999999998753210 0124689999999999997776654332
Q ss_pred ---CCchhhccHHhhhcCC-cEEEEEEcCeEEecCCHHHH------HHHHhHhhcc
Q 015713 328 ---SNDFGSEIIPASVKDH-NVQAFLFNDYWEDIGTIKSF------FMPIWPSQNS 373 (402)
Q Consensus 328 ---~~d~~~~ii~~li~~~-~v~a~~~~g~w~DIgtp~d~------~~A~~~ll~~ 373 (402)
...++.++++.+++++ +|++|.+++||.|+|+++++ ..+++.++.+
T Consensus 197 ~~~~e~~l~d~i~~l~~~g~~V~~~~~~g~w~~~g~~~~~~~~~a~~~~~~~~~~~ 252 (482)
T PRK14352 197 NAQGELYLTDVLAIAREAGHRVGAHHADDSAEVAGVNDRVQLAALGAELNRRIVEA 252 (482)
T ss_pred ccCCcEeHHHHHHHHHHCCCeEEEEecCCcceEEcCCCHHHHHHHHHHHHHHHHHH
Confidence 2345789999999985 79999999999999999888 5555544433
No 39
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.96 E-value=1.5e-28 Score=255.96 Aligned_cols=234 Identities=20% Similarity=0.251 Sum_probs=183.0
Q ss_pred CCeeEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCCCCeEEEEccCCchhHHHHHHhhccCCCCcccC
Q 015713 91 KNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFG 170 (402)
Q Consensus 91 ~~m~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~GI~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~ 170 (402)
++|+|||||||.||||++ .+||+|+||+|+ |||+|++++|..+|+++|+|+++++.+.+.+|+.. .+
T Consensus 6 ~~~~avILAaG~gtRl~~---~~pK~llpi~gk-pli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~---------~~ 72 (481)
T PRK14358 6 RPLDVVILAAGQGTRMKS---ALPKVLHPVAGR-PMVAWAVKAARDLGARKIVVVTGHGAEQVEAALQG---------SG 72 (481)
T ss_pred CCceEEEECCCCCCcCCC---CCCceecEECCe-eHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhcc---------CC
Confidence 469999999999999986 489999999999 99999999999999999999999988888777631 11
Q ss_pred CCcEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCc--cCCccHHHHHHHHHhCCCcEEEEEE
Q 015713 171 DGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH--LYRMDYTEFLQKHIDTKADITVSCV 248 (402)
Q Consensus 171 ~~~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~--l~~~di~~~l~~h~~~~aditi~~~ 248 (402)
+.++... ++.||+++++.++.+++. ..++|+|++||+ +...++.++++.|.++++++|+++.
T Consensus 73 ---i~~v~~~---------~~~Gt~~al~~~~~~l~~----~~~~~lV~~gD~P~i~~~~l~~ll~~~~~~~~~~ti~~~ 136 (481)
T PRK14358 73 ---VAFARQE---------QQLGTGDAFLSGASALTE----GDADILVLYGDTPLLRPDTLRALVADHRAQGSAMTILTG 136 (481)
T ss_pred ---cEEecCC---------CcCCcHHHHHHHHHHhhC----CCCcEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEE
Confidence 4444321 246999999999888741 246799999998 4456789999999999999999888
Q ss_pred EcCCCCCCcceEEEECCCCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEehHHHHHHHHhhC---
Q 015713 249 PMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSY--- 325 (402)
Q Consensus 249 ~~~~~~~~~~g~v~iD~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~~~~l~~ll~~~~--- 325 (402)
+.++ +..||.+.+|++|+|.+|.|||.....+ .....+++|+|+|+++++. +++...
T Consensus 137 ~~~~--~~~yG~v~~d~~g~v~~~~Ek~~~~~~~-----------------~~~~~~n~Giyi~~~~~~~-~~~~i~~~~ 196 (481)
T PRK14358 137 ELPD--ATGYGRIVRGADGAVERIVEQKDATDAE-----------------KAIGEFNSGVYVFDARAPE-LARRIGNDN 196 (481)
T ss_pred EcCC--CCCceEEEECCCCCEEEEEECCCCChhH-----------------hhCCeEEEEEEEEchHHHH-HHHhcCCCc
Confidence 8775 5679999999889999999998743210 0124689999999976532 333221
Q ss_pred CCCCchhhccHHhhhcCC-cEEEEEEcCeEEecCCHHHHHHHHhH-hhcc
Q 015713 326 PLSNDFGSEIIPASVKDH-NVQAFLFNDYWEDIGTIKSFFMPIWP-SQNS 373 (402)
Q Consensus 326 ~~~~d~~~~ii~~li~~~-~v~a~~~~g~w~DIgtp~d~~~A~~~-ll~~ 373 (402)
.....++.++++.+++++ ++++|.++++|..++.-.+++.++++ ++.+
T Consensus 197 ~~ge~~l~d~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~l~~~~~~l~~ 246 (481)
T PRK14358 197 KAGEYYLTDLLGLYRAGGAQVRAFKLSDPDEVLGANDRAGLAQLEATLRR 246 (481)
T ss_pred cCCeEEHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHH
Confidence 112345679999999886 69999999999999988888777764 5543
No 40
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=99.96 E-value=3e-28 Score=236.26 Aligned_cols=234 Identities=21% Similarity=0.307 Sum_probs=168.4
Q ss_pred eeEEEEcCCCCCcCCCCCC-CCCccceecCCcchHHHHHHHHhHhC-CCCeEEEEccCCchh-HHHHHHhhccCCCCccc
Q 015713 93 VAAIILGGGAGTRLFPLTN-RRAKPAVPIGGNYRLIDIPMSNCINS-GFNKIFIMTQFNSFS-LNRHLARSYNLGNGVNF 169 (402)
Q Consensus 93 m~AIILAaG~GtRL~PlT~-~~PKpLvpIgG~~pLId~~i~~l~~~-GI~~IiVv~~~~~~~-i~~~l~~~y~~~~g~~~ 169 (402)
|++||||||.||||+|+|. .+||+|+|++|.+|||+++++++... |+++|+|+++++... +.+++.. .
T Consensus 1 m~~vILAgG~GtRl~PlS~~~~PK~ll~l~g~~~li~~~l~~l~~~~~~~~i~vvt~~~~~~~v~~~l~~-~-------- 71 (274)
T cd02509 1 IYPVILAGGSGTRLWPLSRESYPKQFLKLFGDKSLLQQTLDRLKGLVPPDRILVVTNEEYRFLVREQLPE-G-------- 71 (274)
T ss_pred CEEEEEcccccccCCcCCCCCCCceEeEcCCCCcHHHHHHHHHhcCCCCCcEEEEechHHHHHHHHHHhh-c--------
Confidence 6899999999999999996 79999999999449999999999998 599999999975533 3334422 1
Q ss_pred CCCcEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCccCC--ccHHHHHHHHHh---CCCcEE
Q 015713 170 GDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYR--MDYTEFLQKHID---TKADIT 244 (402)
Q Consensus 170 ~~~~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~--~di~~~l~~h~~---~~adit 244 (402)
. ..+.++.+.. ..||++|+..+..++.. ....+.++|++||+++. .++.++++.|.+ .++.+|
T Consensus 72 ~-~~~~ii~ep~---------~~gTa~ai~~a~~~~~~--~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~~~~~~~vt 139 (274)
T cd02509 72 L-PEENIILEPE---------GRNTAPAIALAALYLAK--RDPDAVLLVLPSDHLIEDVEAFLKAVKKAVEAAEEGYLVT 139 (274)
T ss_pred C-CCceEEECCC---------CCCcHHHHHHHHHHHHh--cCCCCeEEEecchhcccCHHHHHHHHHHHHHHHHcCCEEE
Confidence 0 1144544222 25999999999988852 12357899999999886 567777765543 677888
Q ss_pred EEEEEcCCCCCCcceEEEECCCC-----cEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEehHHHHH
Q 015713 245 VSCVPMDDCRASDYGLMKIDRSG-----QIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLN 319 (402)
Q Consensus 245 i~~~~~~~~~~~~~g~v~iD~~g-----~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~~~~l~~ 319 (402)
+.+.+... ...||+++.|+++ +|.+|.|||.....+.+ .....+++++|+|+|+++.|.+
T Consensus 140 ~gi~p~~~--~t~yGyI~~~~~~~~~~~~V~~f~EKP~~~~a~~~-------------~~~g~~~wNsGiyi~~~~~l~~ 204 (274)
T cd02509 140 FGIKPTRP--ETGYGYIEAGEKLGGGVYRVKRFVEKPDLETAKEY-------------LESGNYLWNSGIFLFRAKTFLE 204 (274)
T ss_pred EEeeecCC--CCCeEEEEeCCcCCCCceEEeEEEECcChHHHHHH-------------hhcCCeEEECceeeeeHHHHHH
Confidence 88888643 5789999998653 89999999985432111 0112478999999999998877
Q ss_pred HHHhhCCCCC----------------chhhccHHh--------hhc--CCcEEEEEEcCeEEecCCHHH
Q 015713 320 LLRSSYPLSN----------------DFGSEIIPA--------SVK--DHNVQAFLFNDYWEDIGTIKS 362 (402)
Q Consensus 320 ll~~~~~~~~----------------d~~~~ii~~--------li~--~~~v~a~~~~g~w~DIgtp~d 362 (402)
.+++..|... .+..+.++. .+- ..++.+++.+..|-|+|++.+
T Consensus 205 ~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sidyavme~~~~~~v~~~~~~W~D~G~w~~ 273 (274)
T cd02509 205 ELKKHAPDIYEALEKALAAAGTDDFLRLLEEAFAKIPSISIDYAVMEKTKKVAVVPADFGWSDLGSWDA 273 (274)
T ss_pred HHHHHCHHHHHHHHHHHHhcCCchhhhhhHHHHhhCCCcccchHhheeCCCcEEEecCCCcCcccCccc
Confidence 7665443211 111233332 222 257888888889999999875
No 41
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=99.96 E-value=1.5e-27 Score=223.44 Aligned_cols=221 Identities=24% Similarity=0.376 Sum_probs=173.7
Q ss_pred EEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCCCCeEEEEccCCchhHHHHHHhhccCCCCcccCCCcE
Q 015713 95 AIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFV 174 (402)
Q Consensus 95 AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~GI~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~~~~V 174 (402)
|||||||.||||++ .+||+|+||+|+ |||+|+++++.++|+++|+|+++++.+.+.+++.+ + + +
T Consensus 1 aiIlaaG~g~R~~~---~~pK~l~~v~gk-pli~~~i~~l~~~~i~~i~iv~~~~~~~i~~~~~~-~--------~---~ 64 (229)
T cd02540 1 AVILAAGKGTRMKS---DLPKVLHPLAGK-PMLEHVLDAARALGPDRIVVVVGHGAEQVKKALAN-P--------N---V 64 (229)
T ss_pred CEEEeCCCCccCCC---CCChhcceeCCc-cHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhCC-C--------C---c
Confidence 69999999999985 689999999999 99999999999999999999999988888777642 1 2 3
Q ss_pred EEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCc-cC-CccHHHHHHHHHhCCCcEEEEEEEcCC
Q 015713 175 EVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-LY-RMDYTEFLQKHIDTKADITVSCVPMDD 252 (402)
Q Consensus 175 ~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~-l~-~~di~~~l~~h~~~~aditi~~~~~~~ 252 (402)
.++.... ..|+++++++++..++. ..++|+++.||+ ++ ..++.++++.|.+.++++++.+.+..+
T Consensus 65 ~~~~~~~---------~~g~~~ai~~a~~~~~~----~~~~vli~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~ 131 (229)
T cd02540 65 EFVLQEE---------QLGTGHAVKQALPALKD----FEGDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTAELED 131 (229)
T ss_pred EEEECCC---------CCCCHHHHHHHHHhhcc----CCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEEcCC
Confidence 4443221 25899999999988841 257899999999 33 567899999998878888888777654
Q ss_pred CCCCcceEEEECCCCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEehHHHHHHHHhhCC---CCC
Q 015713 253 CRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYP---LSN 329 (402)
Q Consensus 253 ~~~~~~g~v~iD~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~~~~l~~ll~~~~~---~~~ 329 (402)
+..|+.+..|++|+|..+.||+..... + ...+.+++|+|+|+++.|..+++.... ...
T Consensus 132 --p~~~~~~~~~~~~~v~~~~ek~~~~~~---------------~--~~~~~~~~giy~~~~~~~~~~l~~~~~~~~~~~ 192 (229)
T cd02540 132 --PTGYGRIIRDGNGKVLRIVEEKDATEE---------------E--KAIREVNAGIYAFDAEFLFEALPKLTNNNAQGE 192 (229)
T ss_pred --CCCccEEEEcCCCCEEEEEECCCCChH---------------H--HhhceEEeEEEEEEHHHHHHHHHHcccccCCCc
Confidence 678998888888999999998753210 0 012578999999999887777665432 234
Q ss_pred chhhccHHhhhcCC-cEEEEEEcCe--EEecCCHHHH
Q 015713 330 DFGSEIIPASVKDH-NVQAFLFNDY--WEDIGTIKSF 363 (402)
Q Consensus 330 d~~~~ii~~li~~~-~v~a~~~~g~--w~DIgtp~d~ 363 (402)
.++.++++.+++.+ +|++|.++|| |+.|+||.++
T Consensus 193 ~~~~d~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~ 229 (229)
T cd02540 193 YYLTDIIALAVADGLKVAAVLADDEEEVLGVNDRVQL 229 (229)
T ss_pred EEHHHHHHHHHHCCCEEEEEEcCCcceEecCCChHhC
Confidence 56789999999875 6999999875 8888898764
No 42
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.95 E-value=9.6e-27 Score=240.33 Aligned_cols=234 Identities=16% Similarity=0.204 Sum_probs=180.3
Q ss_pred CeeEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCCCCeEEEEccCCchhHHHHHHhhccCCCCcccCC
Q 015713 92 NVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGD 171 (402)
Q Consensus 92 ~m~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~GI~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~~ 171 (402)
.+.|||||||.||||+ ..+||+|+|++|+ |||+|++++|...|+++|+|++++..+.+.+++.+.
T Consensus 5 ~~~aiILAaG~gtR~~---~~~pK~l~~i~gk-pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~----------- 69 (456)
T PRK14356 5 TTGALILAAGKGTRMH---SDKPKVLQTLLGE-PMLRFVYRALRPLFGDNVWTVVGHRADMVRAAFPDE----------- 69 (456)
T ss_pred ceeEEEEcCCCCccCC---CCCCceecccCCC-cHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhcccc-----------
Confidence 4789999999999996 5799999999999 999999999999999999999999887776655310
Q ss_pred CcEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCc-cCC-ccHHHHHHHHHhCCCcEEEEEEE
Q 015713 172 GFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-LYR-MDYTEFLQKHIDTKADITVSCVP 249 (402)
Q Consensus 172 ~~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~-l~~-~di~~~l~~h~~~~aditi~~~~ 249 (402)
.++++.... ..||+++|+.+++++++ ...++|++++||+ ++. .++.++++.|. ++++++.+.+
T Consensus 70 -~~~~v~~~~---------~~Gt~~al~~a~~~l~~---~~~d~vlv~~gD~P~i~~~~i~~li~~~~--~~~~~l~~~~ 134 (456)
T PRK14356 70 -DARFVLQEQ---------QLGTGHALQCAWPSLTA---AGLDRVLVVNGDTPLVTTDTIDDFLKEAA--GADLAFMTLT 134 (456)
T ss_pred -CceEEEcCC---------CCCcHHHHHHHHHHHhh---cCCCcEEEEeCCcccCCHHHHHHHHHHHh--cCCEEEEEEE
Confidence 134443221 35899999999988863 1357899999999 444 56888888775 5678888887
Q ss_pred cCCCCCCcceEEEECCCCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEehHHHHHHHHhhCC---
Q 015713 250 MDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYP--- 326 (402)
Q Consensus 250 ~~~~~~~~~g~v~iD~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~~~~l~~ll~~~~~--- 326 (402)
.++ +..||.+.. ++|+|.+|.|||...... ....+.++++|+|+|++++|..+++....
T Consensus 135 ~~~--~~~~g~v~~-~~g~V~~~~ek~~~~~~~---------------~~~~~~~~~~GiY~f~~~~l~~ll~~l~~~~~ 196 (456)
T PRK14356 135 LPD--PGAYGRVVR-RNGHVAAIVEAKDYDEAL---------------HGPETGEVNAGIYYLRLDAVESLLPRLTNANK 196 (456)
T ss_pred cCC--CCCceEEEE-cCCeEEEEEECCCCChHH---------------hhhhcCeEEEEEEEEEHHHHHHHHHhccCccc
Confidence 765 678998877 578999999988643100 00013578999999999998777654321
Q ss_pred CCCchhhccHHhhhcCC-cEEEEEEcC--eEEecCCHHHHHHHHhHhhcc
Q 015713 327 LSNDFGSEIIPASVKDH-NVQAFLFND--YWEDIGTIKSFFMPIWPSQNS 373 (402)
Q Consensus 327 ~~~d~~~~ii~~li~~~-~v~a~~~~g--~w~DIgtp~d~~~A~~~ll~~ 373 (402)
....+++++++.++..+ ++.+|.+.+ +|+||+||+||.+|+..+..+
T Consensus 197 ~~e~~ltd~i~~~~~~g~~v~~~~~~~~~~~~~I~tp~dl~~a~~~l~~~ 246 (456)
T PRK14356 197 SGEYYITDLVGLAVAEGMNVLGVNCGEDPNLLGVNTPAELVRSEELLRAR 246 (456)
T ss_pred CCcEEHHHHHHHHHHCCCeEEEEEcCCcCeEecCcCHHHHHHHHHHHHHH
Confidence 22345689999988764 799999866 579999999999999877754
No 43
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=99.95 E-value=7.4e-27 Score=240.32 Aligned_cols=229 Identities=21% Similarity=0.276 Sum_probs=179.8
Q ss_pred eeEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCCCCeEEEEccCCchhHHHHHHhhccCCCCcccCCC
Q 015713 93 VAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDG 172 (402)
Q Consensus 93 m~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~GI~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~~~ 172 (402)
|+|||||||.||||+| .+||||+||+|+ |||+|+++++.++|+++|+|++++..+.+.+++.+ + +
T Consensus 1 m~aiIlAaG~g~R~~~---~~pK~l~~i~gk-pli~~~l~~l~~~g~~~iiiv~~~~~~~i~~~~~~-~--------~-- 65 (451)
T TIGR01173 1 LSVVILAAGKGTRMKS---DLPKVLHPLAGK-PMLEHVIDAARALGPQKIHVVYGHGAEQVRKALAN-R--------D-- 65 (451)
T ss_pred CeEEEEcCCCCcccCC---CCchhhceeCCc-cHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcC-C--------C--
Confidence 7899999999999987 689999999999 99999999999999999999999998888877742 2 1
Q ss_pred cEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCc-cC-CccHHHHHHHHHhCCCcEEEEEEEc
Q 015713 173 FVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-LY-RMDYTEFLQKHIDTKADITVSCVPM 250 (402)
Q Consensus 173 ~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~-l~-~~di~~~l~~h~~~~aditi~~~~~ 250 (402)
+.++...+ ..|+++++++++.+++ ..++|++++||+ ++ ..++.++++.|.+. .+++++.+.
T Consensus 66 -i~~~~~~~---------~~G~~~ai~~a~~~l~-----~~~~~lv~~~D~p~i~~~~~~~l~~~~~~~--~~~~~~~~~ 128 (451)
T TIGR01173 66 -VNWVLQAE---------QLGTGHAVLQALPFLP-----DDGDVLVLYGDVPLISAETLERLLEAHRQN--GITLLTAKL 128 (451)
T ss_pred -cEEEEcCC---------CCchHHHHHHHHHhcC-----CCCcEEEEECCcCCcCHHHHHHHHHHHhhC--CEEEEEEec
Confidence 33433221 2589999999998874 237899999998 34 46688999888664 366677766
Q ss_pred CCCCCCcceEEEECCCCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEehHHHHHHHHhhCCC---
Q 015713 251 DDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPL--- 327 (402)
Q Consensus 251 ~~~~~~~~g~v~iD~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~~~~l~~ll~~~~~~--- 327 (402)
++ +..|+.+.+|++|+|..|.|||...... ...+.+++|+|+|++++|..+++.....
T Consensus 129 ~~--~~~~g~v~~d~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~G~y~~~~~~l~~~l~~~~~~~~~ 189 (451)
T TIGR01173 129 PD--PTGYGRIIRENDGKVTAIVEDKDANAEQ-----------------KAIKEINTGVYVFDGAALKRWLPKLSNNNAQ 189 (451)
T ss_pred CC--CCCCCEEEEcCCCCEEEEEEcCCCChHH-----------------hcCcEEEEEEEEEeHHHHHHHHHhccccccc
Confidence 43 5669999998889999999997643110 0135789999999999976666553321
Q ss_pred CCchhhccHHhhhcCC-cEEEEEEcCe--EEecCCHHHHHHHHhHhhc
Q 015713 328 SNDFGSEIIPASVKDH-NVQAFLFNDY--WEDIGTIKSFFMPIWPSQN 372 (402)
Q Consensus 328 ~~d~~~~ii~~li~~~-~v~a~~~~g~--w~DIgtp~d~~~A~~~ll~ 372 (402)
...++.++++.++.++ ++++|.++++ |++++||+++.+++..+..
T Consensus 190 ~e~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~i~t~~dl~~~~~~l~~ 237 (451)
T TIGR01173 190 GEYYLTDVIALAVADGETVRAVQVDDSDEVLGVNDRLQLAQLERILQR 237 (451)
T ss_pred CcEeHHHHHHHHHHCCCeEEEEEcCChhheecCCCHHHHHHHHHHHHH
Confidence 2245679999999885 7999999988 9999999999998776654
No 44
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.95 E-value=3.2e-27 Score=244.14 Aligned_cols=227 Identities=16% Similarity=0.246 Sum_probs=176.8
Q ss_pred CCCeeEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCCCCeEEEEccCCchhHHHHHHhhccCCCCccc
Q 015713 90 PKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNF 169 (402)
Q Consensus 90 ~~~m~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~GI~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~ 169 (402)
|+.|++||||||.||||+ ..+||||+|++|+ |||+|+++.+..+|+++|+|+++++.+++.+++.. +
T Consensus 3 ~~~~~aiIlAaG~gtRl~---~~~pK~l~~i~gk-pli~~~i~~l~~~gi~~i~vv~~~~~~~i~~~~~~------~--- 69 (456)
T PRK09451 3 NSAMSVVILAAGKGTRMY---SDLPKVLHTLAGK-PMVQHVIDAANELGAQHVHLVYGHGGDLLKQTLAD------E--- 69 (456)
T ss_pred CCCceEEEEcCCCCCcCC---CCCChhcceeCCh-hHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhhcc------C---
Confidence 457999999999999997 3689999999999 99999999999999999999999988888777631 0
Q ss_pred CCCcEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCc--cCCccHHHHHHHHHhCCCcEEEEE
Q 015713 170 GDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH--LYRMDYTEFLQKHIDTKADITVSC 247 (402)
Q Consensus 170 ~~~~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~--l~~~di~~~l~~h~~~~aditi~~ 247 (402)
.+.++.... ..||+++++.++.+++ ..++|+|++||+ +.+.++.++++.|.+.+ +++.+
T Consensus 70 ---~~~~i~~~~---------~~Gt~~al~~a~~~l~-----~~~~vlV~~gD~P~i~~~~i~~l~~~~~~~~--~~i~~ 130 (456)
T PRK09451 70 ---PLNWVLQAE---------QLGTGHAMQQAAPFFA-----DDEDILMLYGDVPLISVETLQRLRDAKPQGG--IGLLT 130 (456)
T ss_pred ---CcEEEECCC---------CCCcHHHHHHHHHhhc-----cCCcEEEEeCCcccCCHHHHHHHHHHhhcCC--EEEEE
Confidence 134443211 3599999999988874 247899999998 55678899998886554 45566
Q ss_pred EEcCCCCCCcceEEEECCCCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEehHHHHHHHHhhCC-
Q 015713 248 VPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYP- 326 (402)
Q Consensus 248 ~~~~~~~~~~~g~v~iD~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~~~~l~~ll~~~~~- 326 (402)
.+.++ +..||++.. ++|+|.+|.|||.....+ ....++++|+|+|+++.|.++++...+
T Consensus 131 ~~~~~--~~~yG~v~~-~~g~V~~~~EKp~~~~~~-----------------~~~~~~~~GiYi~~~~~l~~~l~~~~~~ 190 (456)
T PRK09451 131 VKLDN--PTGYGRITR-ENGKVVGIVEQKDATDEQ-----------------RQIQEINTGILVANGADLKRWLAKLTNN 190 (456)
T ss_pred EEcCC--CCCceEEEe-cCCeEEEEEECCCCChHH-----------------hhccEEEEEEEEEEHHHHHHHHHhcCCc
Confidence 66654 577998754 578999999998643210 012478999999999998877765432
Q ss_pred --CCCchhhccHHhhhcCC-cEEEEE------EcCe--EEecCCHHHHHHHHh
Q 015713 327 --LSNDFGSEIIPASVKDH-NVQAFL------FNDY--WEDIGTIKSFFMPIW 368 (402)
Q Consensus 327 --~~~d~~~~ii~~li~~~-~v~a~~------~~g~--w~DIgtp~d~~~A~~ 368 (402)
....++.++++.+++++ ++.+|. +.|| |.|++++++|++++.
T Consensus 191 ~~~~e~~l~d~i~~~i~~g~~v~~~~~~~~~~~~G~~~~~di~~~~~y~~~~~ 243 (456)
T PRK09451 191 NAQGEYYITDIIALAHQEGREIVAVHPQRLSEVEGVNNRLQLARLERVYQAEQ 243 (456)
T ss_pred cccCceeHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 13456789999999985 899986 4666 788999999999974
No 45
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.95 E-value=1.8e-26 Score=236.35 Aligned_cols=231 Identities=19% Similarity=0.271 Sum_probs=174.8
Q ss_pred CCeeEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCCCCeEEEEccCCchhHHHHHHhhccCCCCcccC
Q 015713 91 KNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFG 170 (402)
Q Consensus 91 ~~m~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~GI~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~ 170 (402)
+.++|||||||.||||++ .+||||+||+|+ |||+|+++.|..+ +++|+|+++++.+++.+|+.+.+ +
T Consensus 1 m~~~aiIlAaG~GtRl~~---~~pK~Llpi~gk-Pli~~~i~~l~~~-~~~i~Ivv~~~~~~i~~~~~~~~--------~ 67 (430)
T PRK14359 1 MKLSIIILAAGKGTRMKS---SLPKVLHTICGK-PMLFYILKEAFAI-SDDVHVVLHHQKERIKEAVLEYF--------P 67 (430)
T ss_pred CCccEEEEcCCCCccCCC---CCCceeCEECCc-cHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHhcC--------C
Confidence 357899999999999986 799999999999 9999999999987 79999999999999999886432 1
Q ss_pred CCcEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCccCCccHHHHHHHHHhCCCcEEEEEEEc
Q 015713 171 DGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPM 250 (402)
Q Consensus 171 ~~~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~di~~~l~~h~~~~aditi~~~~~ 250 (402)
.++++..... .+.||+++++.+. ...++|++++||..+.. .+.++.+.+.++++++++.+.
T Consensus 68 --~v~~~~~~~~-------~~~gt~~al~~~~--------~~~d~vlv~~gD~p~~~--~~~l~~l~~~~~~~~v~~~~~ 128 (430)
T PRK14359 68 --GVIFHTQDLE-------NYPGTGGALMGIE--------PKHERVLILNGDMPLVE--KDELEKLLENDADIVMSVFHL 128 (430)
T ss_pred --ceEEEEecCc-------cCCCcHHHHhhcc--------cCCCeEEEEECCccCCC--HHHHHHHHhCCCCEEEEEEEc
Confidence 1555543221 2368999997732 13589999999994321 234455556678888888887
Q ss_pred CCCCCCcceEEEECCCCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEehHHHHHHHHhhCC---C
Q 015713 251 DDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYP---L 327 (402)
Q Consensus 251 ~~~~~~~~g~v~iD~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~~~~l~~ll~~~~~---~ 327 (402)
++ +..||.+..| +|+|..+.|++..... + ...+.+++|+|+|++++|.++++.... .
T Consensus 129 ~~--~~~~g~v~~d-~g~v~~i~e~~~~~~~---------------~--~~~~~~~~Giyif~~~~l~~~~~~~~~~~~~ 188 (430)
T PRK14359 129 AD--PKGYGRVVIE-NGQVKKIVEQKDANEE---------------E--LKIKSVNAGVYLFDRKLLEEYLPLLKNQNAQ 188 (430)
T ss_pred CC--CccCcEEEEc-CCeEEEEEECCCCCcc---------------c--ccceEEEeEEEEEEHHHHHHHHHhcCccccc
Confidence 65 5679988775 6899999998754210 0 013678999999999999877654321 1
Q ss_pred CCchhhccHHhhhcC-CcEEEEEEc-CeEEecCCHHHHHHHHhHhhcc
Q 015713 328 SNDFGSEIIPASVKD-HNVQAFLFN-DYWEDIGTIKSFFMPIWPSQNS 373 (402)
Q Consensus 328 ~~d~~~~ii~~li~~-~~v~a~~~~-g~w~DIgtp~d~~~A~~~ll~~ 373 (402)
...+++++++.+++. .++.+|.++ ++|.||+||+||+.|+..+..+
T Consensus 189 ~e~~l~d~i~~l~~~g~~v~~~~~~~~~w~dI~t~~dl~~a~~~l~~~ 236 (430)
T PRK14359 189 KEYYLTDIIALAIEKGETIKAVFVDEENFMGVNSKFELAKAEEIMQER 236 (430)
T ss_pred CceehhhHHHHHHHcCCeEEEEEcCCCEEeCCCCHHHHHHHHHHHHHH
Confidence 234567899999887 579999987 5899999999999998766643
No 46
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.95 E-value=6.1e-26 Score=234.40 Aligned_cols=232 Identities=19% Similarity=0.243 Sum_probs=179.6
Q ss_pred CCeeEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCCCCeEEEEccCCchhHHHHHHhhccCCCCcccC
Q 015713 91 KNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFG 170 (402)
Q Consensus 91 ~~m~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~GI~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~ 170 (402)
+.++|||||||.|+||++ .+||||+||+|+ |||+|+++++.++|+++++|+++++.+++.+|+.. +
T Consensus 1 m~~~avIlAaG~g~Rl~~---~~pK~ll~i~Gk-pli~~~l~~l~~~gi~~iivvv~~~~~~i~~~~~~------~---- 66 (458)
T PRK14354 1 MNRYAIILAAGKGTRMKS---KLPKVLHKVCGK-PMVEHVVDSVKKAGIDKIVTVVGHGAEEVKEVLGD------R---- 66 (458)
T ss_pred CCceEEEEeCCCCcccCC---CCChhhCEeCCc-cHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhcC------C----
Confidence 357899999999999974 689999999999 99999999999999999999999998888776531 1
Q ss_pred CCcEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCc-cC-CccHHHHHHHHHhCCCcEEEEEE
Q 015713 171 DGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-LY-RMDYTEFLQKHIDTKADITVSCV 248 (402)
Q Consensus 171 ~~~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~-l~-~~di~~~l~~h~~~~aditi~~~ 248 (402)
+.++.+. +..|+++++++++.++++ ..++|++++||. ++ ..++.++++.|.+.++++++++.
T Consensus 67 ---~~~~~~~---------~~~g~~~al~~a~~~l~~----~~d~vlv~~~D~p~i~~~~l~~li~~~~~~~~~~t~~~~ 130 (458)
T PRK14354 67 ---SEFALQE---------EQLGTGHAVMQAEEFLAD----KEGTTLVICGDTPLITAETLKNLIDFHEEHKAAATILTA 130 (458)
T ss_pred ---cEEEEcC---------CCCCHHHHHHHHHHHhcc----cCCeEEEEECCccccCHHHHHHHHHHHHhcCCceEEEEE
Confidence 2233221 135899999999988852 236899999997 34 56789999999888888888877
Q ss_pred EcCCCCCCcceEEEECCCCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEehHHHHHHHHhhCCC-
Q 015713 249 PMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPL- 327 (402)
Q Consensus 249 ~~~~~~~~~~g~v~iD~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~~~~l~~ll~~~~~~- 327 (402)
+.++ +..|+.+..|++|+|..|.|||..... ....+.+++|+|+|+++.|.+.++.....
T Consensus 131 ~~~~--~~~~g~v~~d~~~~V~~~~ek~~~~~~-----------------~~~~~~~~~Giy~f~~~~l~~~l~~~~~~~ 191 (458)
T PRK14354 131 IAEN--PTGYGRIIRNENGEVEKIVEQKDATEE-----------------EKQIKEINTGTYCFDNKALFEALKKISNDN 191 (458)
T ss_pred EcCC--CCCceEEEEcCCCCEEEEEECCCCChH-----------------HhcCcEEEEEEEEEEHHHHHHHHHHhCccc
Confidence 7654 567898888888999999998753110 01136789999999998766666543321
Q ss_pred --CCchhhccHHhhhcCC-cEEEEEEcCe--EEecCCHHHHHHHHhHhh
Q 015713 328 --SNDFGSEIIPASVKDH-NVQAFLFNDY--WEDIGTIKSFFMPIWPSQ 371 (402)
Q Consensus 328 --~~d~~~~ii~~li~~~-~v~a~~~~g~--w~DIgtp~d~~~A~~~ll 371 (402)
...++.++++.+++.+ ++++|.++|+ |++|++++||..|+..+.
T Consensus 192 ~~~~~~~~d~~~~l~~~g~~v~~~~~~g~~~~i~i~~~~Dl~~a~~ll~ 240 (458)
T PRK14354 192 AQGEYYLTDVIEILKNEGEKVGAYQTEDFEESLGVNDRVALAEAEKVMR 240 (458)
T ss_pred cCCcEeHHHHHHHHHHCCCeEEEEecCCcceEEccCCHHHHHHHHHHHH
Confidence 2234678899888764 7999999876 567779999999987554
No 47
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.95 E-value=7.7e-26 Score=232.98 Aligned_cols=234 Identities=19% Similarity=0.229 Sum_probs=178.8
Q ss_pred CCCeeEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCCCCeEEEEccCCchhHHHHHHhhccCCCCccc
Q 015713 90 PKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNF 169 (402)
Q Consensus 90 ~~~m~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~GI~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~ 169 (402)
|+++.|||||||.|+||++ .+||+|+|++|+ |||+|+++++..+|+++|+|++++..+.+.+++...
T Consensus 3 ~~~~~aiILAaG~gsR~~~---~~pK~ll~v~gk-pli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~~--------- 69 (446)
T PRK14353 3 DRTCLAIILAAGEGTRMKS---SLPKVLHPVAGR-PMLAHVLAAAASLGPSRVAVVVGPGAEAVAAAAAKI--------- 69 (446)
T ss_pred cccceEEEEcCCCCCccCC---CCCcccCEECCc-hHHHHHHHHHHhCCCCcEEEEECCCHHHHHHHhhcc---------
Confidence 6678999999999999974 589999999999 999999999999999999999999988888776421
Q ss_pred CCCcEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCc-cCC-ccHHHHHHHHHhCCCcEEEEE
Q 015713 170 GDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-LYR-MDYTEFLQKHIDTKADITVSC 247 (402)
Q Consensus 170 ~~~~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~-l~~-~di~~~l~~h~~~~aditi~~ 247 (402)
+.. +.++... +..|++++++.++.+++. ..++|++++||+ ++. .++..+++ |.+.++++++.+
T Consensus 70 ~~~-~~~~~~~---------~~~G~~~sl~~a~~~l~~----~~~~~lv~~~D~P~i~~~~l~~l~~-~~~~~~~~~i~~ 134 (446)
T PRK14353 70 APD-AEIFVQK---------ERLGTAHAVLAAREALAG----GYGDVLVLYGDTPLITAETLARLRE-RLADGADVVVLG 134 (446)
T ss_pred CCC-ceEEEcC---------CCCCcHHHHHHHHHHHhc----cCCCEEEEeCCcccCCHHHHHHHHH-hHhcCCcEEEEE
Confidence 111 2222211 136999999999888752 247899999999 555 45677777 445667888887
Q ss_pred EEcCCCCCCcceEEEECCCCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEehHHHHHHHHhhCC-
Q 015713 248 VPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYP- 326 (402)
Q Consensus 248 ~~~~~~~~~~~g~v~iD~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~~~~l~~ll~~~~~- 326 (402)
.+..+ +..||.+.. ++|+|.++.|||...... ....++++|+|+|+++.|..+++....
T Consensus 135 ~~~~~--~~~~g~~~~-~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~~~~~~l~~~l~~~~~~ 194 (446)
T PRK14353 135 FRAAD--PTGYGRLIV-KGGRLVAIVEEKDASDEE-----------------RAITLCNSGVMAADGADALALLDRVGND 194 (446)
T ss_pred EEeCC--CCcceEEEE-CCCeEEEEEECCCCChHH-----------------hhceEEEEEEEEEEHHHHHHHHHhhccc
Confidence 77654 678998877 578999999998643210 012578999999999887666665432
Q ss_pred --CCCchhhccHHhhhcCC-cEEEEEEc-CeEEecCCHHHHHHHHhHhh
Q 015713 327 --LSNDFGSEIIPASVKDH-NVQAFLFN-DYWEDIGTIKSFFMPIWPSQ 371 (402)
Q Consensus 327 --~~~d~~~~ii~~li~~~-~v~a~~~~-g~w~DIgtp~d~~~A~~~ll 371 (402)
....+++++++.+++.+ +++++.++ ++|+|||||+||..|+..+.
T Consensus 195 ~~~~~~~~~d~~~~l~~~g~~v~~~~~~~~~~~~I~t~~dl~~a~~~~~ 243 (446)
T PRK14353 195 NAKGEYYLTDIVAIARAEGLRVAVVEAPEDEVRGINSRAELAEAEAVWQ 243 (446)
T ss_pred CCCCcEeHHHHHHHHHHCCCeEEEEecChhhcccCCCHHHHHHHHHHHH
Confidence 12345678899998775 69999986 57999999999999996553
No 48
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.94 E-value=1.7e-25 Score=230.61 Aligned_cols=223 Identities=21% Similarity=0.281 Sum_probs=172.7
Q ss_pred eeEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCCCCeEEEEccCCchhHHHHHHhhccCCCCcccCCC
Q 015713 93 VAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDG 172 (402)
Q Consensus 93 m~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~GI~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~~~ 172 (402)
|+|||||||.||||++ .+||||+|++|+ |||+|+++++.+.+ ++|+|++++..+.+.+|+.. +
T Consensus 1 m~avIlA~G~gtRl~~---~~pK~l~~v~gk-pli~~~l~~l~~~~-~~i~vv~~~~~~~i~~~~~~------~------ 63 (448)
T PRK14357 1 MRALVLAAGKGTRMKS---KIPKVLHKISGK-PMINWVIDTAKKVA-QKVGVVLGHEAELVKKLLPE------W------ 63 (448)
T ss_pred CeEEEECCCCCccCCC---CCCceeeEECCe-eHHHHHHHHHHhcC-CcEEEEeCCCHHHHHHhccc------c------
Confidence 7899999999999974 689999999999 99999999999975 99999999988777766531 1
Q ss_pred cEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCc--cCCccHHHHHHHHHhCCCcEEEEEEEc
Q 015713 173 FVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH--LYRMDYTEFLQKHIDTKADITVSCVPM 250 (402)
Q Consensus 173 ~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~--l~~~di~~~l~~h~~~~aditi~~~~~ 250 (402)
+.++... ..+||++++++++.+++ ..++|++++||+ +...++.++++.|.++++++++++.+.
T Consensus 64 -~~~~~~~---------~~~g~~~ai~~a~~~l~-----~~~~vlv~~gD~p~i~~~~i~~l~~~~~~~~~d~ti~~~~~ 128 (448)
T PRK14357 64 -VKIFLQE---------EQLGTAHAVMCARDFIE-----PGDDLLILYGDVPLISENTLKRLIEEHNRKGADVTILVADL 128 (448)
T ss_pred -cEEEecC---------CCCChHHHHHHHHHhcC-----cCCeEEEEeCCcccCCHHHHHHHHHHHHhcCCeEEEEEEEc
Confidence 2333211 13699999999998874 247899999998 556788999999998899999999887
Q ss_pred CCCCCCcceEEEECCCCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEehHHHHHHHHhhCCC---
Q 015713 251 DDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPL--- 327 (402)
Q Consensus 251 ~~~~~~~~g~v~iD~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~~~~l~~ll~~~~~~--- 327 (402)
++ +..||.+.+| +|+| .+.||+..+... ...+.+++|+|+|++++|.++++...+.
T Consensus 129 ~~--~~~~g~v~~d-~g~v-~~~e~~~~~~~~-----------------~~~~~~~~GiYv~~~~~l~~~~~~~~~~~~~ 187 (448)
T PRK14357 129 ED--PTGYGRIIRD-GGKY-RIVEDKDAPEEE-----------------KKIKEINTGIYVFSGDFLLEVLPKIKNENAK 187 (448)
T ss_pred CC--CCCcEEEEEc-CCeE-EEEECCCCChHH-----------------hcCcEEEeEEEEEEHHHHHHHHHhhCcCCCC
Confidence 64 6789999887 6888 888876533100 0125789999999999987776543221
Q ss_pred CCchhhccHHhhhcCCcEEEEEEcCe--EEecCCHHHHHHHHhHhh
Q 015713 328 SNDFGSEIIPASVKDHNVQAFLFNDY--WEDIGTIKSFFMPIWPSQ 371 (402)
Q Consensus 328 ~~d~~~~ii~~li~~~~v~a~~~~g~--w~DIgtp~d~~~A~~~ll 371 (402)
...+..++++.+ .++++|.+.|| |.+++|+++|..++..+.
T Consensus 188 ~~~~~~d~i~~~---~~v~~~~~~~~~~~~~i~~~~~l~~~~~~~~ 230 (448)
T PRK14357 188 GEYYLTDAVNFA---EKVRVVKTEDLLEITGVNTRIQLAWLEKQLR 230 (448)
T ss_pred CeEEHHHHHHhh---hheeEEecCCHHHEEccCCHHHHHHHHHHHH
Confidence 123456788777 35889999898 667779999998876653
No 49
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=99.94 E-value=1.9e-25 Score=221.12 Aligned_cols=238 Identities=23% Similarity=0.290 Sum_probs=193.6
Q ss_pred CeeEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCCCCeEEEEccCCchhHHHHHHhhccCCCCcccCC
Q 015713 92 NVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGD 171 (402)
Q Consensus 92 ~m~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~GI~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~~ 171 (402)
.+.+||||||.||||+ +..||-|.||+|+ ||++|+++.+...+.++|++|++|..+++...+.+..
T Consensus 2 ~~~~vILAAGkGTRMk---S~lPKVLH~vaGk-pMl~hVi~~a~~l~~~~i~vVvGh~ae~V~~~~~~~~---------- 67 (460)
T COG1207 2 SLSAVILAAGKGTRMK---SDLPKVLHPVAGK-PMLEHVIDAARALGPDDIVVVVGHGAEQVREALAERD---------- 67 (460)
T ss_pred CceEEEEecCCCcccc---CCCcccchhccCc-cHHHHHHHHHhhcCcceEEEEEcCCHHHHHHHhcccc----------
Confidence 5789999999999994 6799999999999 9999999999999999999999999999998886321
Q ss_pred CcEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCc-cCCcc-HHHHHHHHHhCCCcEEEEEEE
Q 015713 172 GFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-LYRMD-YTEFLQKHIDTKADITVSCVP 249 (402)
Q Consensus 172 ~~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~-l~~~d-i~~~l~~h~~~~aditi~~~~ 249 (402)
.+.++. |.. ++||++|+.++.++|.+ ....++||++||+ |+..+ +.++++.|...++.++++...
T Consensus 68 -~v~~v~--Q~e-------qlGTgHAV~~a~~~l~~---~~~g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~~ 134 (460)
T COG1207 68 -DVEFVL--QEE-------QLGTGHAVLQALPALAD---DYDGDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTAE 134 (460)
T ss_pred -CceEEE--ecc-------cCChHHHHHhhhhhhhc---CCCCcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEEE
Confidence 133332 321 36999999999999932 1345799999999 66654 677999999999999999999
Q ss_pred cCCCCCCcceEEEECCCCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEehHHHHHHHHhhCCC--
Q 015713 250 MDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPL-- 327 (402)
Q Consensus 250 ~~~~~~~~~g~v~iD~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~~~~l~~ll~~~~~~-- 327 (402)
.++ +..||.+..+++|+|..|.|.....+ .++.-..+++|+|+|+...|.++|.+...+
T Consensus 135 ~~d--P~GYGRIvr~~~g~V~~IVE~KDA~~-----------------eek~I~eiNtGiy~f~~~~L~~~L~~l~nnNa 195 (460)
T COG1207 135 LDD--PTGYGRIVRDGNGEVTAIVEEKDASE-----------------EEKQIKEINTGIYAFDGAALLRALPKLSNNNA 195 (460)
T ss_pred cCC--CCCcceEEEcCCCcEEEEEEcCCCCH-----------------HHhcCcEEeeeEEEEcHHHHHHHHHHhccccc
Confidence 887 89999999999999999999766442 223456899999999999888887764322
Q ss_pred -CCchhhccHHhhhcCC-cEEEEEEcCe--EEecCCHHHHHHHHhHhhcccC
Q 015713 328 -SNDFGSEIIPASVKDH-NVQAFLFNDY--WEDIGTIKSFFMPIWPSQNSLR 375 (402)
Q Consensus 328 -~~d~~~~ii~~li~~~-~v~a~~~~g~--w~DIgtp~d~~~A~~~ll~~~~ 375 (402)
...|+.|++..+..++ +|.++..+++ ..-|++-..+.++++.+.++..
T Consensus 196 qgEYYLTDvI~i~~~~g~~V~a~~~~d~~E~~GVN~R~qLa~~e~~~q~r~~ 247 (460)
T COG1207 196 QGEYYLTDVIAIARNEGEKVRAVHVDDEEEVLGVNDRVQLAEAERIMQRRIA 247 (460)
T ss_pred cCcEeHHHHHHHHHhCCCeEEEEecCchHHhcCcCcHHHHHHHHHHHHHHHH
Confidence 3457788888887764 7888888765 6778899999999998876554
No 50
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.94 E-value=7.5e-25 Score=207.91 Aligned_cols=234 Identities=18% Similarity=0.200 Sum_probs=161.8
Q ss_pred CeeEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCCCCeEEEEccCCchhHHHHHHhhccCCCCcccCC
Q 015713 92 NVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGD 171 (402)
Q Consensus 92 ~m~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~GI~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~~ 171 (402)
++.+||||+|.|+||. +|+|+|++|+ |||+|+++.+..+|+++|+|++++ +.+.+++.+ + +
T Consensus 2 ~~~~iIlA~g~S~R~~------~K~Ll~i~Gk-pll~~~l~~l~~~~i~~ivvv~~~--~~i~~~~~~-~--------~- 62 (245)
T PRK05450 2 KFLIIIPARYASTRLP------GKPLADIGGK-PMIVRVYERASKAGADRVVVATDD--ERIADAVEA-F--------G- 62 (245)
T ss_pred ceEEEEecCCCCCCCC------CCcccccCCc-CHHHHHHHHHHhcCCCeEEEECCc--HHHHHHHHH-c--------C-
Confidence 5789999999999992 6999999999 999999999999999999999864 556666532 2 2
Q ss_pred CcEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCc-cCC-ccHHHHHHHHHhCCCcEEEEEEE
Q 015713 172 GFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-LYR-MDYTEFLQKHIDTKADITVSCVP 249 (402)
Q Consensus 172 ~~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~-l~~-~di~~~l~~h~~~~aditi~~~~ 249 (402)
+.++...+. ++.|+++... +...++ ....+.|++++||+ ++. ..+.++++.|...++++++++.+
T Consensus 63 --~~v~~~~~~-------~~~gt~~~~~-~~~~~~---~~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~~~~~~~~~~ 129 (245)
T PRK05450 63 --GEVVMTSPD-------HPSGTDRIAE-AAAKLG---LADDDIVVNVQGDEPLIPPEIIDQVAEPLANPEADMATLAVP 129 (245)
T ss_pred --CEEEECCCc-------CCCchHHHHH-HHHhcC---CCCCCEEEEecCCCCCCCHHHHHHHHHHHhcCCCCeEeeeee
Confidence 233332222 1346765443 333331 11246799999999 555 55789999888777777777776
Q ss_pred cCC----CCCCcceEEEECCCCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEehHHHHHHHHhhC
Q 015713 250 MDD----CRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSY 325 (402)
Q Consensus 250 ~~~----~~~~~~g~v~iD~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~~~~l~~ll~~~~ 325 (402)
..+ ..++.++++ +|++|+|++|.|||..+.... ++++ ...++++++|+|+|+++++..+++. .
T Consensus 130 ~~~~~~~~~~~~~~v~-~d~~g~v~~~~e~~~~~~~~~----------~~~~-~~~~~~~~~Giy~~~~~~l~~~~~~-~ 196 (245)
T PRK05450 130 IHDAEEAFNPNVVKVV-LDADGRALYFSRAPIPYGRDA----------FADS-APTPVYRHIGIYAYRRGFLRRFVSL-P 196 (245)
T ss_pred cCCHHHhcCcCCCEEE-eCCCCcEEEecCCCCCCCCCc----------cccc-cCccccEEEEEEecCHHHHHHHHhC-C
Confidence 632 235667765 888999999999986432100 0000 0124789999999999999876542 2
Q ss_pred CCCCchh--hccHHhhhcCCcEEEEEEcC-eEEecCCHHHHHHHHhHh
Q 015713 326 PLSNDFG--SEIIPASVKDHNVQAFLFND-YWEDIGTIKSFFMPIWPS 370 (402)
Q Consensus 326 ~~~~d~~--~~ii~~li~~~~v~a~~~~g-~w~DIgtp~d~~~A~~~l 370 (402)
+...+.. .++++.+.+..+|+++.++| +|.|||||+||.+|++.+
T Consensus 197 ~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~w~~i~~~~dl~~a~~~~ 244 (245)
T PRK05450 197 PSPLEKIESLEQLRALENGYRIHVVVVEEAPSIGVDTPEDLERVRALL 244 (245)
T ss_pred CCccccchhHHHHHHHHCCCceEEEEeCCCCCCCcCCHHHHHHHHHHh
Confidence 2211111 12233333456899999996 999999999999999765
No 51
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.94 E-value=5.4e-25 Score=226.86 Aligned_cols=231 Identities=22% Similarity=0.272 Sum_probs=180.5
Q ss_pred eeEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCCCCeEEEEccCCchhHHHHHHhhccCCCCcccCCC
Q 015713 93 VAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDG 172 (402)
Q Consensus 93 m~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~GI~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~~~ 172 (402)
|.+||||||.|+||++ .+||+|+|++|+ |||+|++++|.++|+.+++|++++..+.+.+|+.+. +
T Consensus 2 ~~~iIlAaG~gsR~~~---~~pK~ll~v~gk-pli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~---------~-- 66 (450)
T PRK14360 2 LAVAILAAGKGTRMKS---SLPKVLHPLGGK-SLVERVLDSCEELKPDRRLVIVGHQAEEVEQSLAHL---------P-- 66 (450)
T ss_pred ceEEEEeCCCCccCCC---CCChhcCEECCh-hHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhccc---------C--
Confidence 6799999999999975 689999999999 999999999999999999999999888888777421 1
Q ss_pred cEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCc--cCCccHHHHHHHHHhCCCcEEEEEEEc
Q 015713 173 FVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH--LYRMDYTEFLQKHIDTKADITVSCVPM 250 (402)
Q Consensus 173 ~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~--l~~~di~~~l~~h~~~~aditi~~~~~ 250 (402)
.+.++... ++.|++++++.++.++++ ..++|+|++||+ +...++.++++.|.+.++++++.+.+.
T Consensus 67 ~i~~v~~~---------~~~G~~~sv~~~~~~l~~----~~~~vlV~~~D~P~i~~~~l~~ll~~~~~~~~~~~~~~~~~ 133 (450)
T PRK14360 67 GLEFVEQQ---------PQLGTGHAVQQLLPVLKG----FEGDLLVLNGDVPLLRPETLEALLNTHRSSNADVTLLTARL 133 (450)
T ss_pred CeEEEEeC---------CcCCcHHHHHHHHHHhhc----cCCcEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEec
Confidence 14554322 135899999999988852 246799999999 455778999999999888888877776
Q ss_pred CCCCCCcceEEEECCCCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEehHHHHHHHHhhCCC---
Q 015713 251 DDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPL--- 327 (402)
Q Consensus 251 ~~~~~~~~g~v~iD~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~~~~l~~ll~~~~~~--- 327 (402)
++ +..||.+.+|++|+|.+|.|||..... +...+++++|+|+|+++.|.++++...+.
T Consensus 134 ~~--~~~~g~~~~d~~g~v~~~~ek~~~~~~-----------------~~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~ 194 (450)
T PRK14360 134 PN--PKGYGRVFCDGNNLVEQIVEDRDCTPA-----------------QRQNNRINAGIYCFNWPALAEVLPKLSSNNDQ 194 (450)
T ss_pred CC--CCCccEEEECCCCCEEEEEECCCCChh-----------------HhcCcEEEEEEEEEEHHHHHHHHhhccccccC
Confidence 54 567999999989999999999864211 01246899999999999888877654332
Q ss_pred CCchhhccHHhhhcCCcEEEEEEcCe--EEecCCHHHHHHHHhHhhcc
Q 015713 328 SNDFGSEIIPASVKDHNVQAFLFNDY--WEDIGTIKSFFMPIWPSQNS 373 (402)
Q Consensus 328 ~~d~~~~ii~~li~~~~v~a~~~~g~--w~DIgtp~d~~~A~~~ll~~ 373 (402)
...+++++++.+. ++.++.+.++ |..|++|+++..++..+..+
T Consensus 195 ~e~~~td~i~~~~---~~~~~~v~~~~~~~~i~~~~dl~~~~~~l~~~ 239 (450)
T PRK14360 195 KEYYLTDTVSLLD---PVMAVEVEDYQEINGINDRKQLAQCEEILQNR 239 (450)
T ss_pred CceeHHHHHHHHh---hceEEecCCHHHhhcCCCHHHHHHHHHHHHHH
Confidence 2345667777764 3566777775 56699999999998876543
No 52
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.94 E-value=3.2e-25 Score=229.94 Aligned_cols=241 Identities=19% Similarity=0.282 Sum_probs=166.7
Q ss_pred eeEEEEcCCCCCcCCCCCCC-CCccceecCC-cchHHHHHHHHhHhCCCCeEEEEccCCch-hHHHHHHhhccCCCCccc
Q 015713 93 VAAIILGGGAGTRLFPLTNR-RAKPAVPIGG-NYRLIDIPMSNCINSGFNKIFIMTQFNSF-SLNRHLARSYNLGNGVNF 169 (402)
Q Consensus 93 m~AIILAaG~GtRL~PlT~~-~PKpLvpIgG-~~pLId~~i~~l~~~GI~~IiVv~~~~~~-~i~~~l~~~y~~~~g~~~ 169 (402)
|.+||||||.||||+|+|.. +||+|+|++| + |||+++++.+...|+++++|+++.... .+.+.+. .+
T Consensus 1 ~~~vILAgG~GtRl~PlS~~~~PK~~l~l~g~~-~ll~~tl~~l~~~~~~~iviv~~~~~~~~~~~~l~-~~-------- 70 (468)
T TIGR01479 1 IIPVILAGGSGTRLWPLSRELYPKQFLALVGDL-TMLQQTLKRLAGLPCSSPLVICNEEHRFIVAEQLR-EI-------- 70 (468)
T ss_pred CEEEEecCcccccCCccccCCCCCceeEcCCCC-cHHHHHHHHHhcCCCcCcEEecCHHHHHHHHHHHH-Hc--------
Confidence 57999999999999999996 8999999977 6 999999999999999999999985443 2333332 22
Q ss_pred CCCcEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCccCCc--cHHHHHHHH---HhCCCcEE
Q 015713 170 GDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRM--DYTEFLQKH---IDTKADIT 244 (402)
Q Consensus 170 ~~~~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~--di~~~l~~h---~~~~adit 244 (402)
+.....++.+.. .+|||+|+..+..++... ....+.++|++||+++.. ++.++++.+ .+.++.+|
T Consensus 71 ~~~~~~~i~Ep~---------~~gTa~ai~~aa~~~~~~-~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~a~~~~lvt 140 (468)
T TIGR01479 71 GKLASNIILEPV---------GRNTAPAIALAALLAARR-NGEDPLLLVLAADHVITDEDAFQAAVKLAMPAAAEGKLVT 140 (468)
T ss_pred CCCcceEEeccc---------ccCchHHHHHHHHHHHHH-HCCCcEEEEecCceeecCHHHHHHHHHHHHHHHhcCCEEE
Confidence 111123433222 259999999877666320 012345999999987643 477787764 34566677
Q ss_pred EEEEEcCCCCCCcceEEEECC------CCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEehHHHH
Q 015713 245 VSCVPMDDCRASDYGLMKIDR------SGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLL 318 (402)
Q Consensus 245 i~~~~~~~~~~~~~g~v~iD~------~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~~~~l~ 318 (402)
+.+.+... ...||+++.|+ .++|.+|.|||.....+.+. ....|++++|||+|+++.|.
T Consensus 141 lgi~p~~p--~t~YGyI~~~~~~~~~~~~~V~~f~EKP~~~~a~~~l-------------~~g~~~wNsGif~~~~~~ll 205 (468)
T TIGR01479 141 FGIVPTHP--ETGYGYIRRGEPLAGEDVYQVQRFVEKPDLATAQAYL-------------ESGDYYWNSGMFLFRASRYL 205 (468)
T ss_pred EEecCCCC--CCCceEEEeCCccCCCCceEEeEEEECCChHHHHHHH-------------hcCCeEEEeeEEEEEHHHHH
Confidence 77766543 57899999873 26899999999864321110 11247899999999988776
Q ss_pred HHHHhhCCCC-----------------CchhhccHH---------hhhcC-CcEEEEEEcCeEEecCCHHHHHHHHh
Q 015713 319 NLLRSSYPLS-----------------NDFGSEIIP---------ASVKD-HNVQAFLFNDYWEDIGTIKSFFMPIW 368 (402)
Q Consensus 319 ~ll~~~~~~~-----------------~d~~~~ii~---------~li~~-~~v~a~~~~g~w~DIgtp~d~~~A~~ 368 (402)
+.+++..|.- ..+..++++ .++++ .++.+++.+.+|-|+|+++++.++..
T Consensus 206 ~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iSiDyavmEk~~~v~vv~~~~~W~DvGsw~~l~~~~~ 282 (468)
T TIGR01479 206 AELKKHAPDIYEACEAAVEASEPDLDFIRLDKEAFEQCPSESIDYAVMEKTADAVVVPMDAGWSDVGSWSALWEISD 282 (468)
T ss_pred HHHHHHCHHHHHHHHHHHHhccCCcccceeCHHHHhhCcCCCeeeeeeEcCCcEEEEeCCCCccccCCHHHHHHhhc
Confidence 6655433210 111134445 33333 46888898889999999999998753
No 53
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.93 E-value=1.7e-25 Score=209.48 Aligned_cols=204 Identities=20% Similarity=0.286 Sum_probs=152.3
Q ss_pred eeEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCCCCeEEEEccCCchhHHHHHHhhccCCCCcccCCC
Q 015713 93 VAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDG 172 (402)
Q Consensus 93 m~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~GI~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~~~ 172 (402)
++|||||||.|+||+|+|...||+|+||+|+ |||+|++++|.++|+++|+|++++..+++.+|+...+... ...+ .
T Consensus 1 ~~avIlagg~g~rl~plt~~~pK~llpv~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~~~~~--~~~~-~ 76 (216)
T cd02507 1 FQAVVLADGFGSRFLPLTSDIPKALLPVANV-PLIDYTLEWLEKAGVEEVFVVCCEHSQAIIEHLLKSKWSS--LSSK-M 76 (216)
T ss_pred CeEEEEeCCCccccCccccCCCcccceECCE-EHHHHHHHHHHHCCCCeEEEEeCCcHHHHHHHHHhccccc--ccCC-c
Confidence 5899999999999999999999999999999 9999999999999999999999999999999987543110 0111 1
Q ss_pred cEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCccCCccHHHHHHH--HHhCCCcEEEEEEEc
Q 015713 173 FVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQK--HIDTKADITVSCVPM 250 (402)
Q Consensus 173 ~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~di~~~l~~--h~~~~aditi~~~~~ 250 (402)
.+.+....+. ...||+++++.+.+.+. ++|+|++||++++.++.++++. +...++++++++...
T Consensus 77 ~v~~~~~~~~-------~~~Gta~~l~~~~~~i~-------~dflv~~gD~i~~~~l~~~l~~~r~~~~~~~~~~~~~~~ 142 (216)
T cd02507 77 IVDVITSDLC-------ESAGDALRLRDIRGLIR-------SDFLLLSCDLVSNIPLSELLEERRKKDKNAIATLTVLLA 142 (216)
T ss_pred eEEEEEccCC-------CCCccHHHHHHHhhcCC-------CCEEEEeCCEeecCCHHHHHHHHHhhCcccceEEEEEec
Confidence 2444433332 24699999999987663 7899999999999999999975 556667777776665
Q ss_pred CCCC-------CCcceEEEECCC---CcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEehHHH
Q 015713 251 DDCR-------ASDYGLMKIDRS---GQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVL 317 (402)
Q Consensus 251 ~~~~-------~~~~g~v~iD~~---g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~~~~l 317 (402)
.... ..+++++.+|++ .++..+.|++..... ..+...++.-.+ ...-...+.++|||+|++++|
T Consensus 143 ~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~--~~i~~~~l~~~~-~~~i~~dl~D~~iyi~s~~Vl 216 (216)
T cd02507 143 SPPVSTEQSKKTEEEDVIAVDSKTQRLLLLHYEEDLDEDLE--LIIRKSLLSKHP-NVTIRTDLLDCHIYICSPDVL 216 (216)
T ss_pred cCCCCccccccCCCCcEEEEcCCCCceEEEechhhcCcCcc--cccCHHHHhcCC-CEEEEcCcccccEEEecCcCC
Confidence 4322 556899999988 588888888765322 112333332222 222335788999999998764
No 54
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=99.93 E-value=1.9e-24 Score=204.36 Aligned_cols=226 Identities=18% Similarity=0.268 Sum_probs=158.3
Q ss_pred eeEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhC-CCCeEEEEccCCchhHHHHHHhhccCCCCcccCC
Q 015713 93 VAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINS-GFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGD 171 (402)
Q Consensus 93 m~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~-GI~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~~ 171 (402)
+.+||||+|.|+||. ||+|+||+|+ |||+|+++.+..+ |+++|+|++++ +.+.+++.+ + +
T Consensus 2 ~~~iIlA~g~s~R~~------~K~l~~i~gk-pll~~~l~~l~~~~~i~~ivvv~~~--~~i~~~~~~-~--------~- 62 (239)
T cd02517 2 VIVVIPARYASSRLP------GKPLADIAGK-PMIQHVYERAKKAKGLDEVVVATDD--ERIADAVES-F--------G- 62 (239)
T ss_pred EEEEEecCCCCCCCC------CCCCcccCCc-CHHHHHHHHHHhCCCCCEEEEECCc--HHHHHHHHH-c--------C-
Confidence 679999999999993 7999999999 9999999999998 99999999874 566666642 2 1
Q ss_pred CcEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCc-cCC-ccHHHHHHHHHhC-CCcEEEEEE
Q 015713 172 GFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-LYR-MDYTEFLQKHIDT-KADITVSCV 248 (402)
Q Consensus 172 ~~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~-l~~-~di~~~l~~h~~~-~aditi~~~ 248 (402)
+.++...+. +..||++ +..+...+. ...+.|++++||+ ++. .++..+++.|... ++++++++.
T Consensus 63 --~~~~~~~~~-------~~~gt~~-~~~~~~~~~----~~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~~~~~~~~~~~ 128 (239)
T cd02517 63 --GKVVMTSPD-------HPSGTDR-IAEVAEKLD----ADDDIVVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLAT 128 (239)
T ss_pred --CEEEEcCcc-------cCchhHH-HHHHHHhcC----CCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 333332221 1247875 555554442 1237799999998 554 5688999888766 778888888
Q ss_pred EcCCC----CCCcceEEEECCCCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEehHHHHHHHHhh
Q 015713 249 PMDDC----RASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSS 324 (402)
Q Consensus 249 ~~~~~----~~~~~g~v~iD~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~~~~l~~ll~~~ 324 (402)
+.++. ....|+ |.+|++|+|+.|.+++.....+. .+ ....++++|+|+|++++|..+...
T Consensus 129 ~~~~~~~~~~~~~~~-v~~~~~~~v~~~~~~~~~~~~~~------------~~--~~~~~~~~Giy~~~~~~~~~~~~~- 192 (239)
T cd02517 129 PISDEEELFNPNVVK-VVLDKDGYALYFSRSPIPYPRDS------------SE--DFPYYKHIGIYAYRRDFLLRFAAL- 192 (239)
T ss_pred EcCCHHHccCCCCCE-EEECCCCCEEEecCCCCCCCCCC------------CC--CCceeEEEEEEEECHHHHHHHHhC-
Confidence 77531 233344 56777899999998764321100 00 013579999999999999876543
Q ss_pred CCCCCchhhccHH--hhhcCC-cEEEEEEcCeEEecCCHHHHHHHHh
Q 015713 325 YPLSNDFGSEIIP--ASVKDH-NVQAFLFNDYWEDIGTIKSFFMPIW 368 (402)
Q Consensus 325 ~~~~~d~~~~ii~--~li~~~-~v~a~~~~g~w~DIgtp~d~~~A~~ 368 (402)
..... ...+.++ .++.++ +|.++..+++|.|||||+||.+|++
T Consensus 193 ~~~~~-~~~~~~~~~~~~~~g~~v~~~~~~~~w~~i~t~~dl~~a~~ 238 (239)
T cd02517 193 PPSPL-EQIESLEQLRALENGYKIKVVETDHESIGVDTPEDLERVEA 238 (239)
T ss_pred CCchh-hhhhhHHHHHHHHCCCceEEEEeCCCCCCCCCHHHHHHHHh
Confidence 11111 1223333 345554 5999999999999999999999985
No 55
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.92 E-value=1.3e-24 Score=201.58 Aligned_cols=223 Identities=14% Similarity=0.217 Sum_probs=151.4
Q ss_pred CCCeeEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCCCCeEEEEc-cCCchhHHHHHHhhccCCCCcc
Q 015713 90 PKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMT-QFNSFSLNRHLARSYNLGNGVN 168 (402)
Q Consensus 90 ~~~m~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~GI~~IiVv~-~~~~~~i~~~l~~~y~~~~g~~ 168 (402)
|..|+|||||||.|+||+| .+||||+.|+|+ +||+|+|++|.+.||++++||+ +|..+.+..++. .|+|
T Consensus 1 ~~~~kavILAAG~GsRlg~---~~PK~Lvev~gr-~ii~~~i~~L~~~gi~e~vvV~~g~~~~lve~~l~-~~~~----- 70 (239)
T COG1213 1 MHPMKAVILAAGFGSRLGP---DIPKALVEVGGR-EIIYRTIENLAKAGITEFVVVTNGYRADLVEEFLK-KYPF----- 70 (239)
T ss_pred CCceeEEEEecccccccCC---CCCchhhhcCCe-EeHHHHHHHHHHcCCceEEEEeccchHHHHHHHHh-cCCc-----
Confidence 4568999999999999998 899999999999 9999999999999999999999 898888777764 3322
Q ss_pred cCCCcEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCccCCccHH-HHHHHHHhCCCcEEEEE
Q 015713 169 FGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYT-EFLQKHIDTKADITVSC 247 (402)
Q Consensus 169 ~~~~~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~di~-~~l~~h~~~~aditi~~ 247 (402)
...++...... . .+|+.+|..+.+++. +.|++++|||+|...+. .++ +.++..+++
T Consensus 71 ----~~~iv~N~~y~--k-----tN~~~Sl~~akd~~~-------~~fii~~sD~vye~~~~e~l~----~a~~~~li~- 127 (239)
T COG1213 71 ----NAKIVINSDYE--K-----TNTGYSLLLAKDYMD-------GRFILVMSDHVYEPSILERLL----EAPGEGLIV- 127 (239)
T ss_pred ----ceEEEeCCCcc--c-----CCceeEEeeehhhhc-------CcEEEEeCCEeecHHHHHHHH----hCcCCcEEE-
Confidence 13444432221 1 367999999988875 67999999999988753 333 332222222
Q ss_pred EEcCCCC-CCcceEEEECCCCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEehHHHHHHHHhhCC
Q 015713 248 VPMDDCR-ASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYP 326 (402)
Q Consensus 248 ~~~~~~~-~~~~g~v~iD~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~~~~l~~ll~~~~~ 326 (402)
...+... ..+-..++ +++|++..+.++-+.. ...++|++.|+++++..+.+....
T Consensus 128 d~~~~~~~~~ea~kv~-~e~G~i~~igK~l~e~-----------------------~~e~iGi~~l~~~i~~~~~~~~~e 183 (239)
T COG1213 128 DRRPRYVGVEEATKVK-DEGGRIVEIGKDLTEY-----------------------DGEDIGIFILSDSIFEDTYELLVE 183 (239)
T ss_pred eccccccccCceeEEE-ecCCEEehhcCCcccc-----------------------cceeeeeEEechHHHHHHHHHHhh
Confidence 2221110 11222334 4689999998776532 246799999999987655433211
Q ss_pred CCCchhhccHHhhhcCCcEEEEEE-----cCeEEecCCHHHHHHHHhHhhcc
Q 015713 327 LSNDFGSEIIPASVKDHNVQAFLF-----NDYWEDIGTIKSFFMPIWPSQNS 373 (402)
Q Consensus 327 ~~~d~~~~ii~~li~~~~v~a~~~-----~g~w~DIgtp~d~~~A~~~ll~~ 373 (402)
... .-+..+..+..+.+-.. ..+|.||+||+|+.+|++.+...
T Consensus 184 ~~~----~~~~~~~~~~~~~~~~~di~~~g~~w~EVDtpeDl~~ar~~~~~~ 231 (239)
T COG1213 184 RSE----YDYREVEKEAGLPFTEVDIHVDGLFWMEVDTPEDLERARKYLVPN 231 (239)
T ss_pred hhh----HHHHHHHHHhCCceEEeeccccCceeEecCCHHHHHHHHHHHHHH
Confidence 111 11222333222222222 24799999999999999988754
No 56
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.91 E-value=1.5e-22 Score=191.24 Aligned_cols=225 Identities=16% Similarity=0.301 Sum_probs=153.3
Q ss_pred CeeEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhC-CCCeEEEEccCCchhHHHHHHhhccCCCCcccC
Q 015713 92 NVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINS-GFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFG 170 (402)
Q Consensus 92 ~m~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~-GI~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~ 170 (402)
++.|||||+|.++||. +|+|+|++|+ |||+|+++.+.++ ++++|+|++++ +.+.+++. .+ +
T Consensus 2 ~~~aiIlA~g~s~R~~------~K~l~~i~Gk-Pli~~~i~~l~~~~~~~~ivv~t~~--~~i~~~~~-~~--------~ 63 (238)
T PRK13368 2 KVVVVIPARYGSSRLP------GKPLLDILGK-PMIQHVYERAAQAAGVEEVYVATDD--QRIEDAVE-AF--------G 63 (238)
T ss_pred cEEEEEecCCCCCCCC------CCccCccCCc-CHHHHHHHHHHhcCCCCeEEEECCh--HHHHHHHH-Hc--------C
Confidence 4789999999999993 5999999999 9999999999998 89999999964 56666664 22 2
Q ss_pred CCcEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCc--cCCccHHHHHHHHHhCCC-cEEEEE
Q 015713 171 DGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH--LYRMDYTEFLQKHIDTKA-DITVSC 247 (402)
Q Consensus 171 ~~~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~--l~~~di~~~l~~h~~~~a-diti~~ 247 (402)
++++...+. +..|++ .+..+...+ ..+.|++++||+ +...++.++++.|.+.+. ++++++
T Consensus 64 ---~~v~~~~~~-------~~~g~~-~~~~a~~~~------~~d~~lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~ 126 (238)
T PRK13368 64 ---GKVVMTSDD-------HLSGTD-RLAEVMLKI------EADIYINVQGDEPMIRPRDIDTLIQPMLDDPSINVATLC 126 (238)
T ss_pred ---CeEEecCcc-------CCCccH-HHHHHHHhC------CCCEEEEEcCCcCcCCHHHHHHHHHHHHHCCCccceeEE
Confidence 223222221 123666 455554443 247899999997 445678999998876543 555666
Q ss_pred EEcCCC-C---CCcceEEEECCCCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEehHHHHHHHHh
Q 015713 248 VPMDDC-R---ASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRS 323 (402)
Q Consensus 248 ~~~~~~-~---~~~~g~v~iD~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~~~~l~~ll~~ 323 (402)
.+.++. + +..+++ .++++|+|+.|.|+|...... +. ...++.++|+|+|++++|..+ +.
T Consensus 127 ~~~~~~~~~~~p~~~~~-~~~~~g~v~~~~~~~~~~~~~--------------~~-~~~~~~n~giy~~~~~~l~~~-~~ 189 (238)
T PRK13368 127 APISTEEEFESPNVVKV-VVDKNGDALYFSRSPIPSRRD--------------GE-SARYLKHVGIYAFRRDVLQQF-SQ 189 (238)
T ss_pred EEcCCHHHhcCcCCCEE-EECCCCCEEEeeCCCCCCCCC--------------CC-CCceeEEEEEEEeCHHHHHHH-Hc
Confidence 655431 1 344554 556679999999765321100 00 013588999999999999864 22
Q ss_pred hCCCCC-chhh-ccHHhhhc-CCcEEEEEEcCeEEecCCHHHHHHHHhH
Q 015713 324 SYPLSN-DFGS-EIIPASVK-DHNVQAFLFNDYWEDIGTIKSFFMPIWP 369 (402)
Q Consensus 324 ~~~~~~-d~~~-~ii~~li~-~~~v~a~~~~g~w~DIgtp~d~~~A~~~ 369 (402)
...... .+.. +++ .++. ..++.++..+++|.|||||+||..|+..
T Consensus 190 ~~~~~~~~~~~~~~~-~~~~~g~~v~~~~~~~~~~DI~t~~Dl~~a~~~ 237 (238)
T PRK13368 190 LPETPLEQIESLEQL-RALEHGEKIRMVEVAATSIGVDTPEDLERVRAI 237 (238)
T ss_pred CCCChhhhhhhHHHH-HHHHCCCceEEEEeCCCCCCCCCHHHHHHHHHh
Confidence 111111 1222 455 4554 4569999999999999999999999864
No 57
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.91 E-value=1.6e-23 Score=195.62 Aligned_cols=201 Identities=22% Similarity=0.328 Sum_probs=142.7
Q ss_pred eeEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCCCCeEEEEccCCc-hhHHHHHHhhccCCCCcccCC
Q 015713 93 VAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNS-FSLNRHLARSYNLGNGVNFGD 171 (402)
Q Consensus 93 m~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~GI~~IiVv~~~~~-~~i~~~l~~~y~~~~g~~~~~ 171 (402)
|+|||||||.|+||+|+|..+||+|+||+|+ |||+|++++|..+|+++|+|++++.. +.+..++.... ... +.
T Consensus 1 ~~aVILAgG~g~R~~plt~~~pK~Llpv~g~-pli~~~l~~l~~~g~~~iivv~~~~~~~~i~~~l~~~~-~~~----~~ 74 (214)
T cd04198 1 FQAVILAGGGGSRLYPLTDNIPKALLPVANK-PMIWYPLDWLEKAGFEDVIVVVPEEEQAEISTYLRSFP-LNL----KQ 74 (214)
T ss_pred CEEEEEeCCCCCcCCccccCCCcccCEECCe-eHHHHHHHHHHHCCCCeEEEEECHHHHHHHHHHHHhcc-ccc----Cc
Confidence 6899999999999999999999999999999 99999999999999999999999765 45666664321 111 11
Q ss_pred CcEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCccCCccHHHHHHHHHhCCCcEEEEEEEcC
Q 015713 172 GFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMD 251 (402)
Q Consensus 172 ~~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~di~~~l~~h~~~~aditi~~~~~~ 251 (402)
....+.. .+ ....||+++++.+...+ .++|+|++||.+++.++.++++.|+..++.+|+++.+..
T Consensus 75 ~~~~~~~-~~-------~~~~gt~~al~~~~~~i-------~~d~lv~~~D~i~~~~l~~~l~~h~~~~~~~t~~~~~~~ 139 (214)
T cd04198 75 KLDEVTI-VL-------DEDMGTADSLRHIRKKI-------KKDFLVLSCDLITDLPLIELVDLHRSHDASLTVLLYPPP 139 (214)
T ss_pred ceeEEEe-cC-------CCCcChHHHHHHHHhhc-------CCCEEEEeCccccccCHHHHHHHHhccCCcEEEEEeccC
Confidence 1112221 11 12369999999998765 378999999999999999999999999999999988764
Q ss_pred CCC-----------CCcceEEEECCC-CcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEehHHH
Q 015713 252 DCR-----------ASDYGLMKIDRS-GQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVL 317 (402)
Q Consensus 252 ~~~-----------~~~~g~v~iD~~-g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~~~~l 317 (402)
... ...+.++.+|++ +++..+........ ...++..++.-.| +..-...+.++++|+|++++|
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ll~~~~~~~~~~--~~~~~~~~l~~~~-~~~i~~~l~D~hiyi~~~~v~ 214 (214)
T cd04198 140 VSSEQKGGKGKSKKADERDVIGLDEKTQRLLFITSEEDLDE--DLELRKSLLKRHP-RVTITTKLLDAHVYIFKRWVL 214 (214)
T ss_pred CcccccCCcccccCCCCCceEEEcCCCCEEEEECCHHHhhh--hhhHHHHHHHhCC-CEEEEcCcccceEEEEEeeeC
Confidence 221 234677777754 78887765322111 1112222221111 122235778899999998753
No 58
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=99.86 E-value=8.3e-21 Score=196.29 Aligned_cols=241 Identities=18% Similarity=0.299 Sum_probs=162.3
Q ss_pred CeeEEEEcCCCCCcCCCCCCC-CCccceecCCcchHHHHHHHHhHhCCCCeEEEEccCCchh-HHHHHHhhccCCCCccc
Q 015713 92 NVAAIILGGGAGTRLFPLTNR-RAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFS-LNRHLARSYNLGNGVNF 169 (402)
Q Consensus 92 ~m~AIILAaG~GtRL~PlT~~-~PKpLvpIgG~~pLId~~i~~l~~~GI~~IiVv~~~~~~~-i~~~l~~~y~~~~g~~~ 169 (402)
+|.+||||||.||||+|+|.. +||+|+|++|..|||+++++.+...++.+.+|+|+..... +.+.+. .. . .
T Consensus 5 ~~~~vIlaGG~GtRlwPlS~~~~PKq~l~l~~~~sllq~t~~r~~~~~~~~~iivt~~~~~~~v~~ql~-~~--~----~ 77 (478)
T PRK15460 5 KLYPVVMAGGSGSRLWPLSRVLYPKQFLCLKGDLTMLQTTICRLNGVECESPVVICNEQHRFIVAEQLR-QL--N----K 77 (478)
T ss_pred ceEEEEECCCCccccccCCCCCCCcceeECCCCCCHHHHHHHHHHhCCCCCcEEEeCHHHHHHHHHHHH-hc--C----C
Confidence 389999999999999999997 7999999966449999999999998888888888764432 222332 11 1 0
Q ss_pred CCCcEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCC--CceEEEEcCCccCCcc--HHHHHHHHH---hCCCc
Q 015713 170 GDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKN--VENVLILSGDHLYRMD--YTEFLQKHI---DTKAD 242 (402)
Q Consensus 170 ~~~~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~--~e~~Lvl~gD~l~~~d--i~~~l~~h~---~~~ad 242 (402)
.. ..++.+.. .++||.|+..+..++.. ... .+-++|+++||++... |.+.++... +.+.-
T Consensus 78 ~~--~~ii~EP~---------~rnTApaialaa~~~~~--~~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A~~~A~~~~l 144 (478)
T PRK15460 78 LT--ENIILEPA---------GRNTAPAIALAALAAKR--HSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAEAGKL 144 (478)
T ss_pred cc--ccEEecCC---------CCChHHHHHHHHHHHHH--hcCCCCCeEEEeccccccCCHHHHHHHHHHHHHHHhcCCE
Confidence 01 12333221 15899998877776642 111 3568899999987542 554444332 23666
Q ss_pred EEEEEEEcCCCCCCcceEEEECCC---------CcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEe
Q 015713 243 ITVSCVPMDDCRASDYGLMKIDRS---------GQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFR 313 (402)
Q Consensus 243 iti~~~~~~~~~~~~~g~v~iD~~---------g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~ 313 (402)
+|+.+.|... ...||+++.++. ..|.+|.|||....++.+. +...|+|++|||+|+
T Consensus 145 vt~GI~Pt~P--eTgyGYI~~g~~~~~~~~~~~~~V~~F~EKPd~~tA~~yl-------------~~G~y~WNsGiF~~~ 209 (478)
T PRK15460 145 VTFGIVPDLP--ETGYGYIRRGEVSAGEQDTVAFEVAQFVEKPNLETAQAYV-------------ASGEYYWNSGMFLFR 209 (478)
T ss_pred EEEecCCCCC--CCCCCeEEeCCccccccccCceEeeEEEeCCCHHHHHHHH-------------HcCCEEEecceehee
Confidence 7777776543 578999997642 2699999999976543321 124689999999999
Q ss_pred hHHHHHHHHhhCCC-------------CC-ch--h-hcc--------HHhhhcC--CcEEEEEEcCeEEecCCHHHHHHH
Q 015713 314 TDVLLNLLRSSYPL-------------SN-DF--G-SEI--------IPASVKD--HNVQAFLFNDYWEDIGTIKSFFMP 366 (402)
Q Consensus 314 ~~~l~~ll~~~~~~-------------~~-d~--~-~~i--------i~~li~~--~~v~a~~~~g~w~DIgtp~d~~~A 366 (402)
.+.+...+++..|. .. .+ + .+. |...+.+ .++.+.+.+-.|-|+|++.++.+.
T Consensus 210 a~~~l~~~~~~~P~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iSiDyavmEk~~~v~vvp~~f~WsDvGsW~sl~~~ 289 (478)
T PRK15460 210 AGRYLEELKKYRPDILDACEKAMSAVDPDLDFIRVDEEAFLACPEESVDYAVMERTADAVVVPMDAGWSDVGSWSSLWEI 289 (478)
T ss_pred HHHHHHHHHHHCHHHHHHHHHHHHhccCcccceeeCHHHHhhCcCcchhhhhhcccCceEEEecCCCccccCCHHHHHHh
Confidence 99776665543331 00 00 0 112 2233322 468888888789999999999886
Q ss_pred H
Q 015713 367 I 367 (402)
Q Consensus 367 ~ 367 (402)
.
T Consensus 290 ~ 290 (478)
T PRK15460 290 S 290 (478)
T ss_pred h
Confidence 4
No 59
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=99.82 E-value=3.4e-19 Score=159.67 Aligned_cols=220 Identities=15% Similarity=0.199 Sum_probs=159.2
Q ss_pred eeEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCCCCeEEEEccCCchhHHHHHHhhccCCCCcccCCC
Q 015713 93 VAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDG 172 (402)
Q Consensus 93 m~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~GI~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~~~ 172 (402)
|.|||||||.|||+.|+|...||+|+.|.|+ |||++.|+.|.++||++|+||+||.+++. ++|.+.| +
T Consensus 1 ~nAIIlAAG~gsR~~plT~~tpK~LlkV~g~-plIErqI~~L~e~gI~dI~IVvGYlkE~F-eYLkdKy--------~-- 68 (231)
T COG4750 1 MNAIILAAGLGSRFVPLTQSTPKSLLKVNGE-PLIERQIEQLREAGIDDITIVVGYLKEQF-EYLKDKY--------D-- 68 (231)
T ss_pred CceEEEecccccccccccccCChHHHHhcCc-ccHHHHHHHHHHCCCceEEEEeeehHHHH-HHHHHhc--------C--
Confidence 5799999999999999999999999999999 99999999999999999999999999886 7887776 1
Q ss_pred cEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCccCCccHHHHHHHHHhCCCcEEEEEEEcCC
Q 015713 173 FVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDD 252 (402)
Q Consensus 173 ~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~di~~~l~~h~~~~aditi~~~~~~~ 252 (402)
|.++...... --....++..+.+++ .+..|+.+|.....++- ..+.. .+ --.++....
T Consensus 69 -vtLvyN~kY~-------~yNn~ySlyla~d~l--------~ntYiidsDnyl~kNif---~~~~~-~S-~Yfav~~~~- 126 (231)
T COG4750 69 -VTLVYNPKYR-------EYNNIYSLYLARDFL--------NNTYIIDSDNYLTKNIF---LTKES-HS-KYFAVYRSG- 126 (231)
T ss_pred -eEEEeCchHH-------hhhhHHHHHHHHHHh--------cccEEeccchHhhhhhh---hcCcc-cc-eEEEEEecC-
Confidence 6666543321 136789999999888 57789999997766531 11111 11 112333332
Q ss_pred CCCCcceEEEECCCCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEehHH---HHHHHHhhCCC--
Q 015713 253 CRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDV---LLNLLRSSYPL-- 327 (402)
Q Consensus 253 ~~~~~~g~v~iD~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~~~~---l~~ll~~~~~~-- 327 (402)
....|- +..+.+|+|+++.-.-. ..+.-+|+..|+... +..+++..+-.
T Consensus 127 -~tnEw~-l~~~~~~ki~~v~Igg~------------------------~~~imsG~sff~~~~~~ki~~ll~~~yv~~e 180 (231)
T COG4750 127 -KTNEWL-LIYNSDGKITRVDIGGL------------------------NGYIMSGISFFDAQFSNKIKKLLKEYYVRLE 180 (231)
T ss_pred -CCceeE-EEEcCCCcEEEEEecCc------------------------ccceEeeeeeecchhHHHHHHHHHHHHhCch
Confidence 244553 56778899998864322 134668999998764 34455554321
Q ss_pred -CCchhhccHHhhhcCCcEEEEEEcC-eEEecCCHHHHHHHHhHhhc
Q 015713 328 -SNDFGSEIIPASVKDHNVQAFLFND-YWEDIGTIKSFFMPIWPSQN 372 (402)
Q Consensus 328 -~~d~~~~ii~~li~~~~v~a~~~~g-~w~DIgtp~d~~~A~~~ll~ 372 (402)
..-+..++.-..+++..+++-..++ --+++++.++|.+....++.
T Consensus 181 ~~k~yWd~v~~~ni~~l~m~iek~~~n~IyE~DsLdelrk~~~~~l~ 227 (231)
T COG4750 181 NRKLYWDTVPMENIKELDMYIEKLNDNDIYEFDSLDELRKFEQKFLS 227 (231)
T ss_pred hhhHHHHHHHHHHHHHHhHhHHhhcCCceEEeccHHHHHhhhhhhcC
Confidence 2234567777778777887776654 58999999999988877554
No 60
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.82 E-value=6.3e-19 Score=170.04 Aligned_cols=245 Identities=19% Similarity=0.306 Sum_probs=167.2
Q ss_pred eeEEEEcCCCCCcCCCCCC-CCCccceecCCcchHHHHHHHHhHh-CCCCeEEEEccCCch-hHHHHHHhhccCCCCccc
Q 015713 93 VAAIILGGGAGTRLFPLTN-RRAKPAVPIGGNYRLIDIPMSNCIN-SGFNKIFIMTQFNSF-SLNRHLARSYNLGNGVNF 169 (402)
Q Consensus 93 m~AIILAaG~GtRL~PlT~-~~PKpLvpIgG~~pLId~~i~~l~~-~GI~~IiVv~~~~~~-~i~~~l~~~y~~~~g~~~ 169 (402)
|.+||||||.||||+||+. ..||+++++.|...|++.++..+.. .++++++|||+.... .+.+.+.+ ++.+ .
T Consensus 2 ~~pvIlaGG~GsRLWPLSR~~~PKQFl~L~~~~Sllq~T~~R~~~l~~~~~~~vVtne~~~f~v~eql~e---~~~~--~ 76 (333)
T COG0836 2 MIPVILAGGSGSRLWPLSRKDYPKQFLKLFGDLSLLQQTVKRLAFLGDIEEPLVVTNEKYRFIVKEQLPE---IDIE--N 76 (333)
T ss_pred ceeEEEeCCCccccCCcCcccCCccceeeCCCCcHHHHHHHHHhhcCCccCeEEEeCHHHHHHHHHHHhh---hhhc--c
Confidence 6899999999999999985 7999999996644999999999998 679999999986542 22222221 1100 0
Q ss_pred CCCcEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCccCCcc--HHHHHHHHH---hCCCcEE
Q 015713 170 GDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMD--YTEFLQKHI---DTKADIT 244 (402)
Q Consensus 170 ~~~~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~d--i~~~l~~h~---~~~adit 244 (402)
.. . -++.+. | +.||-|+..+.-.+.. ...+.-++|+..||++... |.+.++... +.+.-+|
T Consensus 77 ~~-~-illEP~------g----RnTApAIA~aa~~~~~--~~~d~~~lVlpsDH~I~d~~af~~av~~A~~~A~~g~lVT 142 (333)
T COG0836 77 AA-G-IILEPE------G----RNTAPAIALAALSATA--EGGDALVLVLPSDHVIADEEAFLNAVKKAEKAAEEGGIVT 142 (333)
T ss_pred cc-c-eEeccC------C----CCcHHHHHHHHHHHHH--hCCCcEEEEecCcceeccHHHHHHHHHHHHHHHHcCCEEE
Confidence 01 1 233322 2 4799999877666542 2334569999999988643 666665543 4566677
Q ss_pred EEEEEcCCCCCCcceEEEECC------CCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEehHHHH
Q 015713 245 VSCVPMDDCRASDYGLMKIDR------SGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLL 318 (402)
Q Consensus 245 i~~~~~~~~~~~~~g~v~iD~------~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~~~~l~ 318 (402)
+...|... ...||+++..+ -.+|.+|.|||.....+.+. ....|++++|+|+|+.+.+.
T Consensus 143 fGI~Pt~P--eTGYGYIe~G~~~~~~~~~~V~~FvEKPd~etA~~yv-------------~sG~y~WNSGmF~Fra~~~l 207 (333)
T COG0836 143 FGIPPTRP--ETGYGYIETGESIAENGVYKVDRFVEKPDLETAKKYV-------------ESGEYLWNSGMFLFRASVFL 207 (333)
T ss_pred EecCCCCC--ccCcceeecCcccccCCceEeeeeeeCCCHHHHHHHH-------------HcCceEeeccceEEEHHHHH
Confidence 77766543 57899998754 23799999999976554332 23469999999999999776
Q ss_pred HHHHhhCCCC-------------Cc--------h---hhccHHhhhcC--CcEEEEEEcCeEEecCCHHHHHHHHhHhh
Q 015713 319 NLLRSSYPLS-------------ND--------F---GSEIIPASVKD--HNVQAFLFNDYWEDIGTIKSFFMPIWPSQ 371 (402)
Q Consensus 319 ~ll~~~~~~~-------------~d--------~---~~~ii~~li~~--~~v~a~~~~g~w~DIgtp~d~~~A~~~ll 371 (402)
+.++...|.- .+ | -..-+...+.+ .++.+.+.+-.|-|+|++.++.+....--
T Consensus 208 ~e~~~~~P~i~~~~~~~~~~~~d~~~~~l~~e~f~~~p~iSIDYAiMEkt~~~aVVp~~f~WsDlGsW~Al~~~~~~d~ 286 (333)
T COG0836 208 EELKKHQPDIYCAAEKAFEAAVDENSVRLDNEAYEEIPAISIDYAIMEKTSKAAVVPADFGWSDLGSWHALWEVLDKDE 286 (333)
T ss_pred HHHHhhCcHHHHHHHHHHhcccccchhcccHHHHhhCcccchhHHHHhhhcceEEEecCCCcccccCHHHHHHHhhcCC
Confidence 6655443320 00 0 01113333433 67888888888999999999988765444
No 61
>PLN02917 CMP-KDO synthetase
Probab=99.80 E-value=7.6e-18 Score=164.92 Aligned_cols=235 Identities=16% Similarity=0.190 Sum_probs=155.9
Q ss_pred CCeeEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCCCCeEEEEccCCchhHHHHHHhhccCCCCcccC
Q 015713 91 KNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFG 170 (402)
Q Consensus 91 ~~m~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~GI~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~ 170 (402)
+++.+||||+|.++||. +|+|+|++|+ |||+|+++.+..++..+.+|| .++.+.+.+++. .+ +
T Consensus 46 ~~i~aIIpA~G~SsR~~------~K~L~~i~Gk-PLL~~vi~~a~~~~~~~~VVV-~~~~e~I~~~~~-~~--------~ 108 (293)
T PLN02917 46 SRVVGIIPARFASSRFE------GKPLVHILGK-PMIQRTWERAKLATTLDHIVV-ATDDERIAECCR-GF--------G 108 (293)
T ss_pred CcEEEEEecCCCCCCCC------CCCeeeECCE-EHHHHHHHHHHcCCCCCEEEE-ECChHHHHHHHH-Hc--------C
Confidence 46789999999999992 5999999999 999999999998765444333 356677766664 22 1
Q ss_pred CCcEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCc-cCC-ccHHHHHHHHHhCCCcEEE--E
Q 015713 171 DGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-LYR-MDYTEFLQKHIDTKADITV--S 246 (402)
Q Consensus 171 ~~~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~-l~~-~di~~~l~~h~~~~aditi--~ 246 (402)
++++...+.. ..||+++ ..+...++ ...+.+++++||. +.. ..+.++++.+.+. .++++ +
T Consensus 109 ---v~vi~~~~~~-------~~GT~~~-~~a~~~l~----~~~d~Vlil~gD~PlI~~~tI~~li~~~~~~-~~~iv~t~ 172 (293)
T PLN02917 109 ---ADVIMTSESC-------RNGTERC-NEALKKLE----KKYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTA 172 (293)
T ss_pred ---CEEEeCCccc-------CCchHHH-HHHHHhcc----CCCCEEEEecCCcCCCCHHHHHHHHHHHHhc-CCceEEEE
Confidence 3333222211 2377776 46766663 1347899999999 444 5578888877554 33333 3
Q ss_pred EEEcCCCCCCcceEEE--ECCCCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEehHHHHHHHHhh
Q 015713 247 CVPMDDCRASDYGLMK--IDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSS 324 (402)
Q Consensus 247 ~~~~~~~~~~~~g~v~--iD~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~~~~l~~ll~~~ 324 (402)
+.+...+.+.+||.++ .|++|++..|...+-+...+. .+.++..+..++|||+|+.+.|. .+...
T Consensus 173 ~~~~~~~~~~~ygrv~vv~~~~g~alyfsr~~Ipe~kd~------------~~~~~~i~~~n~Giy~f~~~~L~-~l~~l 239 (293)
T PLN02917 173 VTSLKPEDASDPNRVKCVVDNQGYAIYFSRGLIPYNKSG------------KVNPQFPYLLHLGIQSYDAKFLK-IYPEL 239 (293)
T ss_pred eeecCHHHhcCCCceEEEECCCCeEEEeecCcCCcCCCc------------ccccccceEEEEEEEEeCHHHHH-HHHcC
Confidence 3333334478899886 687899887775533221100 00112347889999999999988 44332
Q ss_pred CC---CCCchhhccHHhhhcC-CcEEEEEEcCeEEecCCHHHHHHHHhHhhcc
Q 015713 325 YP---LSNDFGSEIIPASVKD-HNVQAFLFNDYWEDIGTIKSFFMPIWPSQNS 373 (402)
Q Consensus 325 ~~---~~~d~~~~ii~~li~~-~~v~a~~~~g~w~DIgtp~d~~~A~~~ll~~ 373 (402)
.+ ....++++++ ++++ .+|.++..+.....|+|++|+..|++.+.++
T Consensus 240 ~~~n~e~e~yLtdl~--~le~G~~i~~~~~~~~~~GVnt~~dL~~ae~~~~~~ 290 (293)
T PLN02917 240 PPTPLQLEEDLEQLK--VLENGYKMKVIKVDHEAHGVDTPEDVEKIEALMRER 290 (293)
T ss_pred CCCcccchhccHHHH--HHhCCCceEEEEeCCCCCCCCCHHHHHHHHHHHHHc
Confidence 22 1334566776 4444 4788888766777999999999999987543
No 62
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=1.5e-18 Score=169.90 Aligned_cols=253 Identities=19% Similarity=0.301 Sum_probs=163.1
Q ss_pred CCCeeEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCCCCeEEEEccC-CchhHHHHHHhhccCCCCcc
Q 015713 90 PKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQF-NSFSLNRHLARSYNLGNGVN 168 (402)
Q Consensus 90 ~~~m~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~GI~~IiVv~~~-~~~~i~~~l~~~y~~~~g~~ 168 (402)
|..++|||+|||.||||-.++...||||+||||+ |||+|+|+.|..+|+++|+|++.. ....|+..|...+ .
T Consensus 7 ~~efqavV~a~~ggt~~p~~~~~~pKaLLPIgn~-PMi~YpL~~L~~~gfteiiVv~~e~e~~~i~~al~~~~------~ 79 (433)
T KOG1462|consen 7 MSEFQAVVLAGGGGTRMPEVTSRLPKALLPIGNK-PMILYPLNSLEQAGFTEIIVVVNEDEKLDIESALGSNI------D 79 (433)
T ss_pred hHHhhhheeecCCceechhhhhhcchhhcccCCc-ceeeeehhHHHhcCCeEEEEEecHHHHHHHHHHHhcCC------c
Confidence 5668999999999999999999999999999999 999999999999999999999986 3345555554333 1
Q ss_pred cCCC--cEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCccCCccHHHHHHHHHhCCCcEEEE
Q 015713 169 FGDG--FVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVS 246 (402)
Q Consensus 169 ~~~~--~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~di~~~l~~h~~~~aditi~ 246 (402)
.... .|++-...+. -.||+++|+.....+. .++|||++||.+.+.++..++++++..++...++
T Consensus 80 l~~~~~~v~ip~~~~~--------d~gtadsLr~Iy~kik------S~DflvlsCD~Vtdv~l~~lvd~FR~~d~slaml 145 (433)
T KOG1462|consen 80 LKKRPDYVEIPTDDNS--------DFGTADSLRYIYSKIK------SEDFLVLSCDFVTDVPLQPLVDKFRATDASLAML 145 (433)
T ss_pred ccccccEEEeeccccc--------ccCCHHHHhhhhhhhc------cCCEEEEecccccCCCcHHHHHHHhccChhHhHH
Confidence 1111 2333332222 2599999999988884 4899999999999999999999999877765544
Q ss_pred EEEcCCC---------CCCcceEEEECCCCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEehHHH
Q 015713 247 CVPMDDC---------RASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVL 317 (402)
Q Consensus 247 ~~~~~~~---------~~~~~g~v~iD~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~~~~l 317 (402)
......+ ....+.++-++++..=.-|....... .....+-..+|--.|.- .-.+.+.++.+|+|+..++
T Consensus 146 i~~~~s~~~~pgqk~k~k~~~d~igi~e~t~rl~y~~~~~d~-~~~l~i~~slL~~~prl-tl~t~L~dahiY~~k~~v~ 223 (433)
T KOG1462|consen 146 IGNALSEVPIPGQKGKKKQARDVIGINEDTERLAYSSDSADE-EEPLVIRKSLLWNHPRL-TLTTKLVDAHIYVFKHWVI 223 (433)
T ss_pred hccccccccccCcccccccccceeeeccccceeEEeecCCcC-CCceehhhhhhhcCCce-EEeccccceeeeeeHHHHH
Confidence 4432211 11223344444443222232221111 01111212212111111 0124678899999999999
Q ss_pred HHHHHhhCCCCCchhhccHHhhhcC---------------------------------CcEEEEEE--cCeEEecCCHHH
Q 015713 318 LNLLRSSYPLSNDFGSEIIPASVKD---------------------------------HNVQAFLF--NDYWEDIGTIKS 362 (402)
Q Consensus 318 ~~ll~~~~~~~~d~~~~ii~~li~~---------------------------------~~v~a~~~--~g~w~DIgtp~d 362 (402)
+. |++. +....|-.+++|.++++ -++++|.. ..-+..++|.-.
T Consensus 224 d~-l~~~-~sisSfk~~f~P~lvkkQ~q~~~~~~~~~~~~l~t~~~~~~d~~~~~~d~ik~y~~~~p~e~~~~raNtL~~ 301 (433)
T KOG1462|consen 224 DL-LSEK-ESISSFKADFLPYLVKKQFQKNPPLKKNETSILPTPNLNNPDGIHSPDDRIKCYAYILPTESLFVRANTLLS 301 (433)
T ss_pred HH-HhcC-CcceeecccccchhhhhhhhcCCCcccccccccCCccccCcccccCcccceeeeEEEccCccceEEecchHH
Confidence 74 4422 12223334444444432 34566654 345889999999
Q ss_pred HHHHH
Q 015713 363 FFMPI 367 (402)
Q Consensus 363 ~~~A~ 367 (402)
|+++|
T Consensus 302 y~eiN 306 (433)
T KOG1462|consen 302 YMEIN 306 (433)
T ss_pred HHhhh
Confidence 99999
No 63
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=9.6e-17 Score=165.29 Aligned_cols=261 Identities=15% Similarity=0.281 Sum_probs=193.2
Q ss_pred CCCeeEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCCCCeEEEEccCCchhHHHHHHh-hccCCCCcc
Q 015713 90 PKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLAR-SYNLGNGVN 168 (402)
Q Consensus 90 ~~~m~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~GI~~IiVv~~~~~~~i~~~l~~-~y~~~~g~~ 168 (402)
...++||+||-..-|||+|+|..+|++|+|+.+. |||+|+++.|..+|+.+|+|.++-+..++.+||.+ .|+....
T Consensus 22 ~~rLqAIllaDsf~trF~Plt~~~p~~LLPlaNV-pmIdYtL~~L~~agV~eVfvfc~~~~~qi~e~i~~sew~~~~~-- 98 (673)
T KOG1461|consen 22 EHRLQAILLADSFETRFRPLTLEKPRVLLPLANV-PMIDYTLEWLERAGVEEVFVFCSAHAAQIIEYIEKSEWYLPMS-- 98 (673)
T ss_pred ccceEEEEEeccchhcccccccCCCceEeeecCc-hHHHHHHHHHHhcCceEEEEEecccHHHHHHHHhhcccccccc--
Confidence 3468999999999999999999999999999999 99999999999999999999999999999999986 4532211
Q ss_pred cCCCcEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCccCCccHHHHHHHHHh-----CCCcE
Q 015713 169 FGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHID-----TKADI 243 (402)
Q Consensus 169 ~~~~~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~di~~~l~~h~~-----~~adi 243 (402)
+ .|..+.... .+..+|++|.... +.....+|++++||++.++++.++++.|++ .++.+
T Consensus 99 ~---~v~ti~s~~---------~~S~GDamR~id~-----k~litgDFiLVsgd~vsN~pl~~~l~eHr~r~k~Dk~~iM 161 (673)
T KOG1461|consen 99 F---IVVTICSGE---------SRSVGDAMRDIDE-----KQLITGDFILVSGDTVSNMPLRNVLEEHRKRRKEDKDAIM 161 (673)
T ss_pred c---eEEEEcCCC---------cCcHHHHHHHHHh-----cceeecceEEEeCCeeecCchHHHHHHHHHHhhhCccceE
Confidence 1 122222111 2468888886532 234569999999999999999999999954 34567
Q ss_pred EEEEEEcCCCCCCcceEEEECC-CCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEehHHHHHHHH
Q 015713 244 TVSCVPMDDCRASDYGLMKIDR-SGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLR 322 (402)
Q Consensus 244 ti~~~~~~~~~~~~~g~v~iD~-~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~~~~l~~ll~ 322 (402)
||+..+...-...+--++.+|. +.++..+.+--. .....+.+.+++.-. .+..-...+.+++|-+++++++. ++.
T Consensus 162 Tmv~k~~st~~~~~~~~~avd~~T~~ll~yq~~~~--~~~~~~l~~sl~d~~-~~v~vr~DL~dc~IdIcS~~V~s-LF~ 237 (673)
T KOG1461|consen 162 TMVFKESSTRETTEQVVIAVDSRTSRLLHYQKCVR--EKHDIQLDLSLFDSN-DEVEVRNDLLDCQIDICSPEVLS-LFT 237 (673)
T ss_pred EEEEeccccccCCcceEEEEcCCcceEEeehhhcc--cccccccCHHHhcCC-CcEEEEccCCCceeeEecHhHHH-Hhh
Confidence 7777765311123344556664 478888876111 111234455555333 22333467889999999999997 555
Q ss_pred hhC--CCCCchhhccHHhhhcCCcEEEEEEcC--eEEecCCHHHHHHHHhHhhccc
Q 015713 323 SSY--PLSNDFGSEIIPASVKDHNVQAFLFND--YWEDIGTIKSFFMPIWPSQNSL 374 (402)
Q Consensus 323 ~~~--~~~~d~~~~ii~~li~~~~v~a~~~~g--~w~DIgtp~d~~~A~~~ll~~~ 374 (402)
..+ +...||...+|-.-+-..+|+++.... |-..|.+...|-...++++++=
T Consensus 238 dNFDyq~r~DfV~GvL~~dilg~kI~~~~~~~~~yA~rv~n~~syd~vSkDiI~RW 293 (673)
T KOG1461|consen 238 DNFDYQTRDDFVRGVLVDDILGYKIHVHVLSSIDYAARVENLRSYDLVSKDIIQRW 293 (673)
T ss_pred hcccceehhhhhhhhhhhhhcCCeEEEEEcChhhhhhhhcccHHHHHHHHHHHHhh
Confidence 544 346778888887777778999999865 9999999999999999998653
No 64
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=99.72 E-value=3.2e-16 Score=147.40 Aligned_cols=219 Identities=17% Similarity=0.201 Sum_probs=143.6
Q ss_pred CCCeeEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCC-CCeEEEEccCCc-hhHHHHHHhhccCCCCc
Q 015713 90 PKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSG-FNKIFIMTQFNS-FSLNRHLARSYNLGNGV 167 (402)
Q Consensus 90 ~~~m~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~G-I~~IiVv~~~~~-~~i~~~l~~~y~~~~g~ 167 (402)
|+.+.+||||||.|+||+ ...||+|+|++|+ |||+|+++++..++ +++|+|++++.. +.+..++. ..
T Consensus 1 ~~~~~~iILAaG~s~R~g---~~~~K~l~~~~g~-pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~-----~~-- 69 (227)
T PRK00155 1 MMMVYAIIPAAGKGSRMG---ADRPKQYLPLGGK-PILEHTLEAFLAHPRIDEIIVVVPPDDRPDFAELLL-----AK-- 69 (227)
T ss_pred CCceEEEEEcCccccccC---CCCCceeeEECCE-EHHHHHHHHHHcCCCCCEEEEEeChHHHHHHHHHhh-----cc--
Confidence 456889999999999993 4589999999999 99999999999865 899999998655 33322211 00
Q ss_pred ccCCCcEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCc-cCC-ccHHHHHHHHHhCCCcEEE
Q 015713 168 NFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-LYR-MDYTEFLQKHIDTKADITV 245 (402)
Q Consensus 168 ~~~~~~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~-l~~-~di~~~l~~h~~~~aditi 245 (402)
. ..+.++... .+.+++++.++..++ ..+.++++.||. +.. ..+.++++.+.+.+ ..+
T Consensus 70 --~-~~~~~~~~~-----------~~~~~sv~~~l~~~~-----~~d~vlv~~~D~P~i~~~~i~~li~~~~~~~--~~~ 128 (227)
T PRK00155 70 --D-PKVTVVAGG-----------AERQDSVLNGLQALP-----DDDWVLVHDAARPFLTPDDIDRLIEAAEETG--AAI 128 (227)
T ss_pred --C-CceEEeCCc-----------chHHHHHHHHHHhCC-----CCCEEEEccCccCCCCHHHHHHHHHHHhhCC--CEE
Confidence 0 113333210 247899999987763 246899999999 444 45788888876653 334
Q ss_pred EEEEcCCCCCCcceEEEECCCCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEehHHHHHHHHhhC
Q 015713 246 SCVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSY 325 (402)
Q Consensus 246 ~~~~~~~~~~~~~g~v~iD~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~~~~l~~ll~~~~ 325 (402)
.+.+..+ .+. .++++|.+.++.+. .. ....-+.|+|+.+.|.+++....
T Consensus 129 ~~~~~~~----~~~--~v~~~g~~~~~~~r---~~----------------------~~~~~~p~~f~~~~l~~~~~~~~ 177 (227)
T PRK00155 129 LAVPVKD----TIK--RSDDGGGIVDTPDR---SG----------------------LWAAQTPQGFRIELLREALARAL 177 (227)
T ss_pred EEEeccc----cEE--EEcCCCceeecCCh---HH----------------------heeeeCCccchHHHHHHHHHHHH
Confidence 4455432 122 23556766655321 10 12223478999999988876533
Q ss_pred CCCCchhhccHHhhhc-CCcEEEEEEcCeEEecCCHHHHHHHHhHhhc
Q 015713 326 PLSNDFGSEIIPASVK-DHNVQAFLFNDYWEDIGTIKSFFMPIWPSQN 372 (402)
Q Consensus 326 ~~~~d~~~~ii~~li~-~~~v~a~~~~g~w~DIgtp~d~~~A~~~ll~ 372 (402)
.. ..+..+....+.. ..++..+..+..++||+|++||..|+..+.+
T Consensus 178 ~~-~~~~~d~~~~~~~~~~~i~~~~~~~~~~~Idt~~Dl~~ae~~~~~ 224 (227)
T PRK00155 178 AE-GKTITDDASAVERLGKPVRLVEGRYDNIKITTPEDLALAEAILKR 224 (227)
T ss_pred hc-CCCcCcHHHHHHHcCCCeEEEecCcccccCCCHHHHHHHHHHHHh
Confidence 21 2223333333333 2467777766678899999999999887653
No 65
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=99.71 E-value=4.3e-16 Score=145.29 Aligned_cols=210 Identities=17% Similarity=0.215 Sum_probs=141.3
Q ss_pred EEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhC-CCCeEEEEccCCc-hhHHHHHHhhccCCCCcccCCC
Q 015713 95 AIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINS-GFNKIFIMTQFNS-FSLNRHLARSYNLGNGVNFGDG 172 (402)
Q Consensus 95 AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~-GI~~IiVv~~~~~-~~i~~~l~~~y~~~~g~~~~~~ 172 (402)
+||||||.|+||+. ..||+|++++|+ |||+|+++++..+ ++++|+|++++.. +.+..++.. . .
T Consensus 2 aiIlAaG~s~R~~~---~~~K~l~~l~gk-pll~~~l~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~------~-----~ 66 (217)
T TIGR00453 2 AVIPAAGRGTRFGS---GVPKQYLELGGR-PLLEHTLDAFLAHPAIDEVVVVVSPEDQEFFQKYLVA------R-----A 66 (217)
T ss_pred EEEEcCcccccCCC---CCCccEeEECCe-EHHHHHHHHHhcCCCCCEEEEEEChHHHHHHHHHhhc------C-----C
Confidence 89999999999952 479999999999 9999999999998 8999999998754 333322210 0 0
Q ss_pred cEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCc-cCC-ccHHHHHHHHHhCCCcEEEEEEEc
Q 015713 173 FVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-LYR-MDYTEFLQKHIDTKADITVSCVPM 250 (402)
Q Consensus 173 ~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~-l~~-~di~~~l~~h~~~~aditi~~~~~ 250 (402)
.+.++.. + .+..++++.++..++ ..+.++++.||. +.. ..+..+++.+.+. ++++.+.+.
T Consensus 67 ~~~~~~~----~-------~~~~~sl~~~l~~~~-----~~d~vlv~~~D~P~i~~~~i~~li~~~~~~--~~~~~~~~~ 128 (217)
T TIGR00453 67 VPKIVAG----G-------DTRQDSVRNGLKALK-----DAEWVLVHDAARPFVPKELLDRLLEALRKA--GAAILALPV 128 (217)
T ss_pred cEEEeCC----C-------chHHHHHHHHHHhCC-----CCCEEEEccCccCCCCHHHHHHHHHHHhhC--CcEEEeEec
Confidence 1333321 0 135688888877651 247899999999 555 4578888877654 344455554
Q ss_pred CCCCCCcceEEEECCCCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEehHHHHHHHHhhCCCCCc
Q 015713 251 DDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSND 330 (402)
Q Consensus 251 ~~~~~~~~g~v~iD~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~~~~l~~ll~~~~~~~~d 330 (402)
.+ ++..+|++|.+..+.|+.. -+...+ .|+|+.+.|.+++...... ..
T Consensus 129 ~~------~v~~~~~~g~~~~~~~r~~------------------------~~~~~~-p~~f~~~~l~~~~~~~~~~-~~ 176 (217)
T TIGR00453 129 AD------TLKRVEADGFIVETVDREG------------------------LWAAQT-PQAFRTELLKKALARAKEE-GF 176 (217)
T ss_pred cc------eEEEEcCCCceeecCChHH------------------------eEEEeC-CCcccHHHHHHHHHHHHhc-CC
Confidence 32 4555676787887776321 123333 6999999998877543222 22
Q ss_pred hhhccHHhhhc-CCcEEEEEEcCeEEecCCHHHHHHHHhH
Q 015713 331 FGSEIIPASVK-DHNVQAFLFNDYWEDIGTIKSFFMPIWP 369 (402)
Q Consensus 331 ~~~~ii~~li~-~~~v~a~~~~g~w~DIgtp~d~~~A~~~ 369 (402)
+..|....+.. ..++..+..+..+++|+||+||..|+..
T Consensus 177 ~~~d~~~~~~~~g~~i~~~~~~~~~~~I~~~~Dl~~ae~~ 216 (217)
T TIGR00453 177 EITDDASAVEKLGGKVALVEGDALNFKITTPEDLALAEAL 216 (217)
T ss_pred CCCcHHHHHHHcCCCeEEEecCccccccCCHHHHHHHHHh
Confidence 23444444443 3467777777677899999999998864
No 66
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=99.69 E-value=9.9e-16 Score=142.59 Aligned_cols=213 Identities=19% Similarity=0.276 Sum_probs=143.3
Q ss_pred eEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCC-CCeEEEEccCCchhHHHHHHhhccCCCCcccCCC
Q 015713 94 AAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSG-FNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDG 172 (402)
Q Consensus 94 ~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~G-I~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~~~ 172 (402)
.+||||||.|+||++ ..||+|+|++|+ |||+|+++++..++ +++|+|++++........+. .+.. ..
T Consensus 2 ~~vILAaG~s~R~~~---~~~K~l~~i~Gk-pll~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~-~~~~------~~- 69 (218)
T cd02516 2 AAIILAAGSGSRMGA---DIPKQFLELGGK-PVLEHTLEAFLAHPAIDEIVVVVPPDDIDLAKELA-KYGL------SK- 69 (218)
T ss_pred EEEEECCcccccCCC---CCCcceeEECCe-EHHHHHHHHHhcCCCCCEEEEEeChhHHHHHHHHH-hccc------CC-
Confidence 589999999999964 279999999999 99999999999976 99999999877654444331 1101 11
Q ss_pred cEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCc-cCC-ccHHHHHHHHHhCCCcEEEEEEEc
Q 015713 173 FVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-LYR-MDYTEFLQKHIDTKADITVSCVPM 250 (402)
Q Consensus 173 ~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~-l~~-~di~~~l~~h~~~~aditi~~~~~ 250 (402)
.+.++... .|..++++.++..+++ ...+.++++.||+ +.. ..+.++++.+...+ ..+.+.+.
T Consensus 70 ~~~~~~~~-----------~~~~~si~~al~~~~~---~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~--~~~~~~~~ 133 (218)
T cd02516 70 VVKIVEGG-----------ATRQDSVLNGLKALPD---ADPDIVLIHDAARPFVSPELIDRLIDALKEYG--AAIPAVPV 133 (218)
T ss_pred CeEEECCc-----------hHHHHHHHHHHHhccc---CCCCEEEEccCcCCCCCHHHHHHHHHHHhhCC--cEEEEEec
Confidence 13333211 2467889999877631 1357899999999 455 45788888876554 33444444
Q ss_pred CCCCCCcceEEEECCCCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEehHHHHHHHHhhCCCCCc
Q 015713 251 DDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSND 330 (402)
Q Consensus 251 ~~~~~~~~g~v~iD~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~~~~l~~ll~~~~~~~~d 330 (402)
.+ ++...|++|.|.++.+..+. ....++ ++|+.+.|.+++...... .-
T Consensus 134 ~~------~~~~~~~~g~~~~~~~r~~~------------------------~~~~~P-~~f~~~~~~~~~~~~~~~-~~ 181 (218)
T cd02516 134 TD------TIKRVDDDGVVVETLDREKL------------------------WAAQTP-QAFRLDLLLKAHRQASEE-GE 181 (218)
T ss_pred cc------cEEEecCCCceeecCChHHh------------------------hhhcCC-CcccHHHHHHHHHHHHhc-CC
Confidence 32 23346778999888764221 244566 899999999887654332 22
Q ss_pred hhhccHHhhhcC-CcEEEEEEcCeEEecCCHHHHHHH
Q 015713 331 FGSEIIPASVKD-HNVQAFLFNDYWEDIGTIKSFFMP 366 (402)
Q Consensus 331 ~~~~ii~~li~~-~~v~a~~~~g~w~DIgtp~d~~~A 366 (402)
++.|....+.+. .++..+..+..-+||+||+||..|
T Consensus 182 ~~td~~~~~~~~~~~v~~v~~~~~~~~i~t~~dl~~~ 218 (218)
T cd02516 182 EFTDDASLVEAAGGKVALVEGSEDNIKITTPEDLALA 218 (218)
T ss_pred CcCcHHHHHHHcCCCeEEEecCcccccCCCHHHHhhC
Confidence 344544444433 367776666666799999999643
No 67
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=99.68 E-value=4.7e-15 Score=138.24 Aligned_cols=218 Identities=17% Similarity=0.227 Sum_probs=140.8
Q ss_pred CeeEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCC-CCeEEEEccCCchhHHHHHHhhccCCCCcccC
Q 015713 92 NVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSG-FNKIFIMTQFNSFSLNRHLARSYNLGNGVNFG 170 (402)
Q Consensus 92 ~m~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~G-I~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~ 170 (402)
++.+||||+|.|+||. .|+|+|++|+ |||+|+++.+..++ +++|+|++ +.+.+.+++. .+ +
T Consensus 1 ~~~~iIlA~G~s~R~~------~K~l~~l~Gk-pll~~~l~~l~~~~~~~~IvV~~--~~~~i~~~~~-~~--------~ 62 (223)
T cd02513 1 KILAIIPARGGSKGIP------GKNIRPLGGK-PLIAWTIEAALESKLFDRVVVST--DDEEIAEVAR-KY--------G 62 (223)
T ss_pred CeEEEEecCCCCCCCC------CcccchhCCc-cHHHHHHHHHHhCCCCCEEEEEC--CcHHHHHHHH-Hh--------C
Confidence 3679999999999993 5999999999 99999999999987 88888877 3455555543 22 1
Q ss_pred CCcEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCc--cCCccHHHHHHHHHhCCCcEEEEEE
Q 015713 171 DGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH--LYRMDYTEFLQKHIDTKADITVSCV 248 (402)
Q Consensus 171 ~~~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~--l~~~di~~~l~~h~~~~aditi~~~ 248 (402)
. .+.++....... | ..|+.++++.++..++.. ....+.|+++.||+ +....+.++++.+...+++.++.+.
T Consensus 63 ~-~~~~~~~~~~~~--~---~~~~~~~i~~~l~~l~~~-~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~ 135 (223)
T cd02513 63 A-EVPFLRPAELAT--D---TASSIDVILHALDQLEEL-GRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVT 135 (223)
T ss_pred C-CceeeCChHHCC--C---CCCcHHHHHHHHHHHHHh-CCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEE
Confidence 1 011221111100 0 137899999998887521 01237899999999 4446789999998887788888777
Q ss_pred EcCCCCCCcceEEEECCCCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEehHHHHHHHHhhCCCC
Q 015713 249 PMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLS 328 (402)
Q Consensus 249 ~~~~~~~~~~g~v~iD~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~~~~l~~ll~~~~~~~ 328 (402)
+..+ ..-++.. .+++| ...+...+.... ..+....-+..++|+|+++.+.+.+..
T Consensus 136 ~~~~--~~~~~~~-~~~~~-~~~~~~~~~~~~--------------~~q~~~~~~~~n~~~y~~~~~~~~~~~------- 190 (223)
T cd02513 136 EFHR--FPWRALG-LDDNG-LEPVNYPEDKRT--------------RRQDLPPAYHENGAIYIAKREALLESN------- 190 (223)
T ss_pred ecCc--CcHHhee-eccCC-ceeccCcccccC--------------CcCCChhHeeECCEEEEEEHHHHHhcC-------
Confidence 7653 2333332 22233 222221111000 000011236678899999999875321
Q ss_pred CchhhccHHhhhcCCcEEEEEEcC-eEEecCCHHHHHHHHhH
Q 015713 329 NDFGSEIIPASVKDHNVQAFLFND-YWEDIGTIKSFFMPIWP 369 (402)
Q Consensus 329 ~d~~~~ii~~li~~~~v~a~~~~g-~w~DIgtp~d~~~A~~~ 369 (402)
. + -.+++..|..+. .-.||+|++||..|+..
T Consensus 191 ~-~---------~g~~~~~~~~~~~~~~dI~~~~D~~~ae~~ 222 (223)
T cd02513 191 S-F---------FGGKTGPYEMPRERSIDIDTEEDFELAEAL 222 (223)
T ss_pred C-c---------cCCCeEEEEeCccceeCCCCHHHHHHHHHh
Confidence 0 1 156788887766 58999999999998764
No 68
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=99.66 E-value=5.7e-15 Score=149.22 Aligned_cols=209 Identities=17% Similarity=0.213 Sum_probs=143.2
Q ss_pred CCCeeEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCC-CCeEEEEccCCchhHHHHHHhhccCCCCcc
Q 015713 90 PKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSG-FNKIFIMTQFNSFSLNRHLARSYNLGNGVN 168 (402)
Q Consensus 90 ~~~m~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~G-I~~IiVv~~~~~~~i~~~l~~~y~~~~g~~ 168 (402)
|+++.+||||||.|+|| +...||++++++|+ |||+|+++.+..++ +++|+|++++....+.+.+...
T Consensus 3 mm~v~aIILAAG~GsRm---g~~~pKqll~l~Gk-Pll~~tl~~l~~~~~i~~IvVVv~~~~~~~~~~~~~~-------- 70 (378)
T PRK09382 3 MSDISLVIVAAGRSTRF---SAEVKKQWLRIGGK-PLWLHVLENLSSAPAFKEIVVVIHPDDIAYMKKALPE-------- 70 (378)
T ss_pred CCcceEEEECCCCCccC---CCCCCeeEEEECCe-eHHHHHHHHHhcCCCCCeEEEEeChHHHHHHHHhccc--------
Confidence 67789999999999999 44689999999999 99999999999987 7999999987655443332111
Q ss_pred cCCCcEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCc-cCCcc-HHHHHHHHHhCCCcEEEE
Q 015713 169 FGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-LYRMD-YTEFLQKHIDTKADITVS 246 (402)
Q Consensus 169 ~~~~~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~-l~~~d-i~~~l~~h~~~~aditi~ 246 (402)
+. .+.++.. | .+..++|+.++..++ .+.++|+.||. +...+ +..+++...+. ++++.
T Consensus 71 ~~--~v~~v~g-------G----~~r~~SV~~gL~~l~------~d~VLVhdadrPfv~~e~I~~li~~~~~~--~a~i~ 129 (378)
T PRK09382 71 IK--FVTLVTG-------G----ATRQESVRNALEALD------SEYVLIHDAARPFVPKELIDRLIEALDKA--DCVLP 129 (378)
T ss_pred CC--eEEEeCC-------C----chHHHHHHHHHHhcC------CCeEEEeeccccCCCHHHHHHHHHHhhcC--CeEEE
Confidence 11 1333321 1 247899999988774 37899999998 55544 57777765543 56777
Q ss_pred EEEcCCCCCCcceEEEECCCCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEehHHHHHHHHhhCC
Q 015713 247 CVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYP 326 (402)
Q Consensus 247 ~~~~~~~~~~~~g~v~iD~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~~~~l~~ll~~~~~ 326 (402)
+.++.+ +..|+...+|. ..+..+ ++|+.. +.+.+.+..+
T Consensus 130 ~~pv~D--tik~~~~tldR-~~l~~~-QTPQ~f---------------------------------~~~~l~~a~~---- 168 (378)
T PRK09382 130 ALPVAD--TLKRANETVDR-EGLKLI-QTPQLS---------------------------------RTKTLKAAAD---- 168 (378)
T ss_pred EEEecc--CcEEeeeEcCc-ccEEEE-ECCCCC---------------------------------CHHHHHHHHh----
Confidence 888765 56676555553 355544 666542 1222222221
Q ss_pred CCCchhhccHHhhhcC-CcEEEEEEcCeEEecCCHHHHHHHHhHhhcc
Q 015713 327 LSNDFGSEIIPASVKD-HNVQAFLFNDYWEDIGTIKSFFMPIWPSQNS 373 (402)
Q Consensus 327 ~~~d~~~~ii~~li~~-~~v~a~~~~g~w~DIgtp~d~~~A~~~ll~~ 373 (402)
...+ .+|....+... .+|..+..++.|.+|+||+||..|+..+...
T Consensus 169 ~~~~-~TDd~sl~~~~G~~V~~v~g~~~n~KITtpeDL~~A~~~l~~~ 215 (378)
T PRK09382 169 GRGD-FTDDSSAAEAAGGKVALVEGSEDLHKLTYKEDLKMADLLLSPS 215 (378)
T ss_pred CCCC-cccHHHHHHHcCCcEEEEECCCcccCCCCHHHHHHHHHHhccC
Confidence 1122 34555555544 5788888888999999999999999977543
No 69
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=99.66 E-value=2.2e-14 Score=136.53 Aligned_cols=228 Identities=17% Similarity=0.188 Sum_probs=144.1
Q ss_pred EEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCCCCeEEEEccCCchhHHHHHHhhccCCCCcccCCCcE
Q 015713 95 AIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFV 174 (402)
Q Consensus 95 AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~GI~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~~~~V 174 (402)
+||+|+|.|||| .+|+|++++|+ |||.|+++++..+++++|+|++.. +.+.+++. .+ + +
T Consensus 2 ~iIpA~g~s~R~------~~K~L~~l~Gk-Pli~~~le~~~~~~~d~VvVvt~~--~~i~~~~~-~~--------g---~ 60 (238)
T TIGR00466 2 VIIPARLASSRL------PGKPLEDIFGK-PMIVHVAENANESGADRCIVATDD--ESVAQTCQ-KF--------G---I 60 (238)
T ss_pred EEEecCCCCCCC------CCCeecccCCc-CHHHHHHHHHHhCCCCeEEEEeCH--HHHHHHHH-Hc--------C---C
Confidence 799999999999 37999999999 999999999999899999999863 44555443 22 2 2
Q ss_pred EEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCc-cCC-ccHHHHHHHHHhCCCcEEEEEEEcCC
Q 015713 175 EVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-LYR-MDYTEFLQKHIDTKADITVSCVPMDD 252 (402)
Q Consensus 175 ~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~-l~~-~di~~~l~~h~~~~aditi~~~~~~~ 252 (402)
.++...+.. ..|+ +.+..+...+. ....+.++++.||. +.. ..+.++++.+.+.+.++++++.+..+
T Consensus 61 ~~v~~~~~~-------~~Gt-~r~~~~~~~l~---~~~~d~Vli~~gD~Pli~~~~I~~li~~~~~~~~~~a~~~~~~~d 129 (238)
T TIGR00466 61 EVCMTSKHH-------NSGT-ERLAEVVEKLA---LKDDERIVNLQGDEPFIPKEIIRQVADNLATKNVPMAALAVKIHD 129 (238)
T ss_pred EEEEeCCCC-------CChh-HHHHHHHHHhC---CCCCCEEEEEcCCcCcCCHHHHHHHHHHHhcCCCCEEEEeeecCC
Confidence 222211111 1243 33333333331 01246789999999 555 45788888876656777778887654
Q ss_pred CC---CCcceEEEECCCCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEehHHHHHHHHhhCCCCC
Q 015713 253 CR---ASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSN 329 (402)
Q Consensus 253 ~~---~~~~g~v~iD~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~~~~l~~ll~~~~~~~~ 329 (402)
.. ..+...+..|.+|++..|...+.+..-.. ....-.| +...++...|+|.|+.++|.++.... ++.-
T Consensus 130 ~~~~~~p~~vk~v~~~~g~alyfsr~~ip~~R~~-----~~~~~tp---q~~~~~~h~Giy~~~~~~L~~~~~~~-~~~l 200 (238)
T TIGR00466 130 AEEAFNPNAVKVVLDSQGYALYFSRSLIPFDRDF-----FAKRQTP---VGDNLLRHIGIYGYRAGFIEEYVAWK-PCVL 200 (238)
T ss_pred HHHccCCCceEEEeCCCCeEEEecCCCCCCCCCc-----ccccccc---cccceeEEEEEEeCCHHHHHHHHhCC-CCcc
Confidence 11 12233344577888888876533211000 0001111 11247789999999999999876542 2111
Q ss_pred c-h-hhccHHhhhcCCcEEEEEEcCe-EEecCCHHHH
Q 015713 330 D-F-GSEIIPASVKDHNVQAFLFNDY-WEDIGTIKSF 363 (402)
Q Consensus 330 d-~-~~~ii~~li~~~~v~a~~~~g~-w~DIgtp~d~ 363 (402)
. . .-|-+..+-...+|.+...++. -..||||+|+
T Consensus 201 e~~e~leqlr~le~g~~i~~~~~~~~~~~~vdt~~d~ 237 (238)
T TIGR00466 201 EEIEKLEQLRVLYYGEKIHVKIAQEVPSVGVDTQEDL 237 (238)
T ss_pred cccchhHHHhhhhcCCceEEEEeCCCCCCCCCChHHc
Confidence 1 1 1245666666678988887665 4599999997
No 70
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=99.64 E-value=6.1e-15 Score=133.86 Aligned_cols=120 Identities=18% Similarity=0.291 Sum_probs=89.4
Q ss_pred EEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCCCCeEEEEccCCchhHHHHHHhhccCCCCcccCCCcE
Q 015713 95 AIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFV 174 (402)
Q Consensus 95 AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~GI~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~~~~V 174 (402)
+||||||.|+||+ .||+|+|++|+ |||+|+++.+.++++++|+|++++..+.+..++.+. ++ +
T Consensus 2 ~iIla~G~s~R~g-----~~K~ll~~~g~-pll~~~i~~l~~~~~~~iivv~~~~~~~~~~~~~~~--------~~---v 64 (188)
T TIGR03310 2 AIILAAGLSSRMG-----QNKLLLPYKGK-TILEHVVDNALRLFFDEVILVLGHEADELVALLANH--------SN---I 64 (188)
T ss_pred eEEECCCCcccCC-----CCceecccCCe-eHHHHHHHHHHHcCCCcEEEEeCCcHHHHHHHhccC--------CC---e
Confidence 7999999999995 59999999999 999999999999999999999998776554443221 12 4
Q ss_pred EEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCc-cCC-ccHHHHHHHHHhCCCcEE
Q 015713 175 EVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-LYR-MDYTEFLQKHIDTKADIT 244 (402)
Q Consensus 175 ~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~-l~~-~di~~~l~~h~~~~adit 244 (402)
.++.... +..|++++++.++.+ . ...+.|+|+.||+ ++. ..+..+++.+...+.+++
T Consensus 65 ~~v~~~~--------~~~g~~~si~~~l~~-~----~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~ 123 (188)
T TIGR03310 65 TLVHNPQ--------YAEGQSSSIKLGLEL-P----VQSDGYLFLLGDQPFVTPDIIQLLLEAFALKNDEIV 123 (188)
T ss_pred EEEECcC--------hhcCHHHHHHHHhcC-C----CCCCEEEEEeCCcCCCCHHHHHHHHHHHHhCCCcEE
Confidence 4443221 124899999988762 1 1357899999999 444 457788887766555443
No 71
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=99.64 E-value=1.1e-14 Score=137.39 Aligned_cols=219 Identities=17% Similarity=0.176 Sum_probs=139.2
Q ss_pred CeeEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhC-CCCeEEEEccCCchh-HHHHHHhhccCCCCccc
Q 015713 92 NVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINS-GFNKIFIMTQFNSFS-LNRHLARSYNLGNGVNF 169 (402)
Q Consensus 92 ~m~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~-GI~~IiVv~~~~~~~-i~~~l~~~y~~~~g~~~ 169 (402)
.+.+||||||.|+||. ...||+|++++|+ |||.|+++++..+ ++++|+|+++..... +.+.+ +.|.+
T Consensus 2 ~~~~iIlAaG~g~R~g---~~~~K~l~~l~gk-pll~~~i~~~~~~~~~~~ivVv~~~~~~~~~~~~~-~~~~~------ 70 (230)
T PRK13385 2 NYELIFLAAGQGKRMN---APLNKMWLDLVGE-PIFIHALRPFLADNRCSKIIIVTQAQERKHVQDLM-KQLNV------ 70 (230)
T ss_pred ceEEEEECCeeccccC---CCCCcceeEECCe-EHHHHHHHHHHcCCCCCEEEEEeChhhHHHHHHHH-HhcCc------
Confidence 3679999999999994 4579999999999 9999999999886 599999999764322 22222 22311
Q ss_pred CCCcEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCc-cCCc-cHHHHHHHHHhCCCcEEEEE
Q 015713 170 GDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-LYRM-DYTEFLQKHIDTKADITVSC 247 (402)
Q Consensus 170 ~~~~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~-l~~~-di~~~l~~h~~~~aditi~~ 247 (402)
....++++... .+..++++.++..++ ..+.++++.||. +... .+.++++.+.+.++. +.+
T Consensus 71 ~~~~~~~v~~g-----------~~r~~sv~~gl~~~~-----~~d~vli~~~d~P~i~~~~i~~li~~~~~~~~~--~~~ 132 (230)
T PRK13385 71 ADQRVEVVKGG-----------TERQESVAAGLDRIG-----NEDVILVHDGARPFLTQDIIDRLLEGVAKYGAA--ICA 132 (230)
T ss_pred CCCceEEcCCC-----------chHHHHHHHHHHhcc-----CCCeEEEccCCCCCCCHHHHHHHHHHHhhCCcE--EEE
Confidence 01113443211 135689999987764 236689999999 5554 467888877665543 334
Q ss_pred EEcCCCCCCcceEEEECCCCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEehHHHHHHHHhhCCC
Q 015713 248 VPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPL 327 (402)
Q Consensus 248 ~~~~~~~~~~~g~v~iD~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~~~~l~~ll~~~~~~ 327 (402)
.+..+ .++...+|.+....++ . ..+..-+.+.|+.+.|.+..+.....
T Consensus 133 ~~~~d-------ti~~~~~~~~~~~i~r---~----------------------~~~~~qtpq~f~~~~l~~~~~~~~~~ 180 (230)
T PRK13385 133 VEVKD-------TVKRVKDKQVIETVDR---N----------------------ELWQGQTPQAFELKILQKAHRLASEQ 180 (230)
T ss_pred Eeccc-------eEEEEcCCeeEeccCH---H----------------------HHhhhcCCceeeHHHHHHHHHHHHhc
Confidence 44332 2322234555433321 1 12233357899998887776532211
Q ss_pred CCchhhccHHhhhc-CCcEEEEEEcCeEEecCCHHHHHHHHhHhhc
Q 015713 328 SNDFGSEIIPASVK-DHNVQAFLFNDYWEDIGTIKSFFMPIWPSQN 372 (402)
Q Consensus 328 ~~d~~~~ii~~li~-~~~v~a~~~~g~w~DIgtp~d~~~A~~~ll~ 372 (402)
..+.++....+.. ..+|..+.-+.....|+||+|+..|+..+..
T Consensus 181 -~~~~td~~~~~~~~g~~v~~v~~~~~n~kItt~eDl~~a~~~l~~ 225 (230)
T PRK13385 181 -QFLGTDEASLVERSPHPVKLVQGSYYNIKLTTPEDMPLAKAILQG 225 (230)
T ss_pred -CCCcCcHHHHHHHcCCCEEEEECCcccCcCCCHHHHHHHHHHHhh
Confidence 1223443333332 3567777777788999999999999987754
No 72
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=99.61 E-value=6.1e-15 Score=134.95 Aligned_cols=125 Identities=24% Similarity=0.284 Sum_probs=95.4
Q ss_pred eeEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCCCCeEEEEccCCchhHHHHHHhhccCCCCcccCCC
Q 015713 93 VAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDG 172 (402)
Q Consensus 93 m~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~GI~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~~~ 172 (402)
|.|||||||.||||++ .||+|+|++|+ |||+|+++++..+++++|+|+++++.+.+..++...+
T Consensus 1 m~aIILAgG~gsRmg~----~~K~Ll~i~Gk-plI~~vi~~l~~~~i~~I~Vv~~~~~~~~~~~l~~~~----------- 64 (183)
T TIGR00454 1 MDALIMAGGKGTRLGG----VEKPLIEVCGR-CLIDHVLSPLLKSKVNNIIIATSPHTPKTEEYINSAY----------- 64 (183)
T ss_pred CeEEEECCccCccCCC----CCceEeEECCE-EHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHhhcC-----------
Confidence 6899999999999965 79999999999 9999999999999999999999988777777775321
Q ss_pred cEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCccC--CccHHHHHHHHHhCCCcEEEEEEE
Q 015713 173 FVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLY--RMDYTEFLQKHIDTKADITVSCVP 249 (402)
Q Consensus 173 ~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~--~~di~~~l~~h~~~~aditi~~~~ 249 (402)
+.+.. + . -.|.+.++..++..+. ..++|++++||+.+ ...+..+++.+...+...+.++.+
T Consensus 65 -~~~~~-~--~-------g~G~~~~l~~al~~~~-----~~~~~lv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~~ 127 (183)
T TIGR00454 65 -KDYKN-A--S-------GKGYIEDLNECIGELY-----FSEPFLVVSSDLINLRSKIIDSIVDYYYCIKAPALAVMIP 127 (183)
T ss_pred -cEEEe-c--C-------CCCHHHHHHHHhhccc-----CCCCEEEEeCCcCcCCHHHHHHHHHHHHhcCCCceEEEec
Confidence 12222 1 1 1478888888776432 35799999999943 456788888887766655444443
No 73
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=99.59 E-value=1.1e-14 Score=129.03 Aligned_cols=121 Identities=26% Similarity=0.390 Sum_probs=93.2
Q ss_pred EEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCCCCeEEEEccCCchhHHHHHHhhccCCCCcccCCCcE
Q 015713 95 AIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFV 174 (402)
Q Consensus 95 AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~GI~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~~~~V 174 (402)
+||||||.|+||. .||+|+||+|+ |||+|+++.+.++|+++|+|++++ +.+..++.+ ++ +
T Consensus 1 ~vILa~G~s~Rmg-----~~K~l~~i~g~-~li~~~l~~l~~~~~~~Ivvv~~~--~~~~~~~~~---------~~---~ 60 (160)
T PF12804_consen 1 AVILAAGKSSRMG-----GPKALLPIGGK-PLIERVLEALREAGVDDIVVVTGE--EEIYEYLER---------YG---I 60 (160)
T ss_dssp EEEEESSSCGGGT-----SCGGGSEETTE-EHHHHHHHHHHHHTESEEEEEEST--HHHHHHHTT---------TT---S
T ss_pred CEEECCcCcccCC-----CCccceeECCc-cHHHHHHHHhhccCCceEEEecCh--HHHHHHHhc---------cC---c
Confidence 6999999999995 49999999999 999999999999999999999988 344444421 11 4
Q ss_pred EEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCccC-C-ccHHHHHHHHHhCCCcEEEEEE
Q 015713 175 EVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLY-R-MDYTEFLQKHIDTKADITVSCV 248 (402)
Q Consensus 175 ~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~-~-~di~~~l~~h~~~~aditi~~~ 248 (402)
+++..... ..|++++++.++..+. ..++|++++||+.+ . ..+..+++.+.+.+.++++...
T Consensus 61 ~~v~~~~~--------~~G~~~sl~~a~~~~~-----~~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~~~i~~~~~ 123 (160)
T PF12804_consen 61 KVVVDPEP--------GQGPLASLLAALSQLP-----SSEPVLVLPCDQPFLSPELLRRLLEALEKSPADIVVPVF 123 (160)
T ss_dssp EEEE-STS--------SCSHHHHHHHHHHTST-----TSSEEEEEETTETTS-HHHHHHHHHHHHHTTTSEEEEEE
T ss_pred eEEEeccc--------cCChHHHHHHHHHhcc-----cCCCcEEEeCCccccCHHHHHHHHHHHhccCCcEEEEEE
Confidence 55543321 2599999999987762 46999999999944 5 4578889888877777765444
No 74
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=99.56 E-value=3e-13 Score=124.01 Aligned_cols=115 Identities=20% Similarity=0.237 Sum_probs=83.2
Q ss_pred CCCeeEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCCCCeEEEEccCCchhHHHHHHhhccCCCCccc
Q 015713 90 PKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNF 169 (402)
Q Consensus 90 ~~~m~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~GI~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~ 169 (402)
|.+|.+||||||.|+||. ..||+++|++|+ |||+|+++.+. .++++|+|+++...+.+ . .+
T Consensus 1 ~~~~~~vILA~G~s~Rm~----~~~K~ll~~~g~-~ll~~~i~~l~-~~~~~i~vv~~~~~~~~----~-~~-------- 61 (193)
T PRK00317 1 MPPITGVILAGGRSRRMG----GVDKGLQELNGK-PLIQHVIERLA-PQVDEIVINANRNLARY----A-AF-------- 61 (193)
T ss_pred CCCceEEEEcCCCcccCC----CCCCceeEECCE-EHHHHHHHHHh-hhCCEEEEECCCChHHH----H-hc--------
Confidence 567899999999999994 379999999999 99999999998 78999999987543221 1 11
Q ss_pred CCCcEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCc-cCCcc-HHHHHHHHHhC
Q 015713 170 GDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-LYRMD-YTEFLQKHIDT 239 (402)
Q Consensus 170 ~~~~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~-l~~~d-i~~~l~~h~~~ 239 (402)
+ +.++..... ...|+.++|+.++... ..+.++++.||+ +...+ +..+++.+.+.
T Consensus 62 ~---~~~v~~~~~-------~~~g~~~~i~~~l~~~------~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~ 117 (193)
T PRK00317 62 G---LPVIPDSLA-------DFPGPLAGILAGLKQA------RTEWVLVVPCDTPFIPPDLVARLAQAAGKD 117 (193)
T ss_pred C---CcEEeCCCC-------CCCCCHHHHHHHHHhc------CCCeEEEEcCCcCCCCHHHHHHHHHhhhcC
Confidence 1 233322111 1258889999887654 357899999999 55544 66777655433
No 75
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=99.55 E-value=2.2e-13 Score=123.25 Aligned_cols=113 Identities=19% Similarity=0.258 Sum_probs=84.1
Q ss_pred eeEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCCCCeEEEEccCCchhHHHHHHhhccCCCCcccCCC
Q 015713 93 VAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDG 172 (402)
Q Consensus 93 m~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~GI~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~~~ 172 (402)
|.+||||||.|+||++ ||+++|++|+ |||+|+++.+... +++|+|++++..+. . ..+ +
T Consensus 1 ~~~iILAgG~s~Rmg~-----~K~ll~~~g~-~ll~~~i~~l~~~-~~~iivv~~~~~~~----~-~~~--------~-- 58 (181)
T cd02503 1 ITGVILAGGKSRRMGG-----DKALLELGGK-PLLEHVLERLKPL-VDEVVISANRDQER----Y-ALL--------G-- 58 (181)
T ss_pred CcEEEECCCccccCCC-----CceeeEECCE-EHHHHHHHHHHhh-cCEEEEECCCChHH----H-hhc--------C--
Confidence 4689999999999963 9999999999 9999999999988 99999999986543 1 111 1
Q ss_pred cEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCc-cCCc-cHHHHHHHHHhCCCcE
Q 015713 173 FVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-LYRM-DYTEFLQKHIDTKADI 243 (402)
Q Consensus 173 ~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~-l~~~-di~~~l~~h~~~~adi 243 (402)
+.++.... +..|+.++|+.++..++ .+.++++.||+ +... .+..+++.+ ..+.++
T Consensus 59 -~~~v~~~~--------~~~G~~~si~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~-~~~~~~ 115 (181)
T cd02503 59 -VPVIPDEP--------PGKGPLAGILAALRAAP------ADWVLVLACDMPFLPPELLERLLAAA-EEGADA 115 (181)
T ss_pred -CcEeeCCC--------CCCCCHHHHHHHHHhcC------CCeEEEEeCCcCCCCHHHHHHHHHhh-ccCCCE
Confidence 33443221 23589999999987653 58899999999 4454 466777665 444444
No 76
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=99.54 E-value=9.9e-13 Score=123.92 Aligned_cols=215 Identities=19% Similarity=0.258 Sum_probs=144.2
Q ss_pred EEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCC-CCeEEEEccCCchhHHHHHHhhccCCCCcccCCCc
Q 015713 95 AIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSG-FNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGF 173 (402)
Q Consensus 95 AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~G-I~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~~~~ 173 (402)
|||||+|.++|| ..|.+.|++|+ |||.|+++.+.+++ +++|+|.+. ++.+.+.. +.| |..
T Consensus 2 aiIpArG~Skr~------~~Knl~~l~Gk-pLi~~ti~~a~~s~~~d~IvVstd--~~~i~~~a-~~~--------g~~- 62 (222)
T TIGR03584 2 AIIPARGGSKRI------PRKNIKPFCGK-PMIAYSIEAALNSGLFDKVVVSTD--DEEIAEVA-KSY--------GAS- 62 (222)
T ss_pred EEEccCCCCCCC------CCccchhcCCc-CHHHHHHHHHHhCCCCCEEEEeCC--CHHHHHHH-HHc--------CCE-
Confidence 799999999999 26999999999 99999999999986 788888774 34554433 333 211
Q ss_pred EEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCccC-C-ccHHHHHHHHHhCCCcEEEEEEEcC
Q 015713 174 VEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLY-R-MDYTEFLQKHIDTKADITVSCVPMD 251 (402)
Q Consensus 174 V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~-~-~di~~~l~~h~~~~aditi~~~~~~ 251 (402)
+.+....... .+..|+.++++.++..++.. ...+.|+++.||.-+ . .++.++++.+.+.+++..+++.+..
T Consensus 63 v~~~r~~~l~-----~d~~~~~~si~~~l~~l~~~--~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv~~~~ 135 (222)
T TIGR03584 63 VPFLRPKELA-----DDFTGTAPVVKHAIEELKLQ--KQYDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFSVTSFA 135 (222)
T ss_pred eEEeChHHHc-----CCCCCchHHHHHHHHHHhhc--CCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEeeccC
Confidence 2222111110 11248999999999887521 135779999999933 3 5789999998887789888888764
Q ss_pred CCCCCcceEEEECCCCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEehHHHHHHHHhhCCCCCch
Q 015713 252 DCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDF 331 (402)
Q Consensus 252 ~~~~~~~g~v~iD~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~~~~l~~ll~~~~~~~~d~ 331 (402)
. +..+. ...+++|++..+........ .|+ ...-|..+.++|+++++.|.+ . ..+
T Consensus 136 ~--~~~~~-~~~~~~g~~~~~~~~~~~~~--------------rQd-~~~~y~~nga~y~~~~~~~~~---~-----~~~ 189 (222)
T TIGR03584 136 F--PIQRA-FKLKENGGVEMFFPEHFNTR--------------SQD-LEEAYHDAGQFYWGKSQAWLE---S-----GPI 189 (222)
T ss_pred C--ChHHh-eEECCCCcEEecCCCcccCC--------------CCC-CchheeeCCeEEEEEHHHHHh---c-----CCc
Confidence 3 22232 24556777765552211100 011 112367799999999998752 1 011
Q ss_pred hhccHHhhhcCCcEEEEEEcC-eEEecCCHHHHHHHHhHh
Q 015713 332 GSEIIPASVKDHNVQAFLFND-YWEDIGTIKSFFMPIWPS 370 (402)
Q Consensus 332 ~~~ii~~li~~~~v~a~~~~g-~w~DIgtp~d~~~A~~~l 370 (402)
+ .+++.+|.++. .-.||+|++||..|+..+
T Consensus 190 --------~-~~~~~~~~m~~~~~iDID~~~D~~~ae~l~ 220 (222)
T TIGR03584 190 --------F-SPHSIPIVLPRHLVQDIDTLEDWERAELLY 220 (222)
T ss_pred --------c-CCCcEEEEeCccceeCCCCHHHHHHHHHHH
Confidence 1 45678888765 589999999999998754
No 77
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.53 E-value=1e-13 Score=125.01 Aligned_cols=121 Identities=21% Similarity=0.390 Sum_probs=90.0
Q ss_pred eeEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCCCCeEEEEccCCchhHHHHHHhhccCCCCcccCCC
Q 015713 93 VAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDG 172 (402)
Q Consensus 93 m~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~GI~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~~~ 172 (402)
|.+||||||.|+||++ ||+|+|++|+ |||+|+++.+...|+++|+|+++++...+..++. . ++
T Consensus 1 ~~~vIlAgG~s~R~g~-----~K~l~~~~g~-~li~~~i~~l~~~~~~~i~vv~~~~~~~~~~~~~-~--------~~-- 63 (186)
T cd04182 1 IAAIILAAGRSSRMGG-----NKLLLPLDGK-PLLRHALDAALAAGLSRVIVVLGAEADAVRAALA-G--------LP-- 63 (186)
T ss_pred CeEEEECCCCCCCCCC-----CceeCeeCCe-eHHHHHHHHHHhCCCCcEEEECCCcHHHHHHHhc-C--------CC--
Confidence 4689999999999965 9999999999 9999999999999999999999987655443331 1 11
Q ss_pred cEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCc-cCC-ccHHHHHHHHHhCCCcE
Q 015713 173 FVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-LYR-MDYTEFLQKHIDTKADI 243 (402)
Q Consensus 173 ~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~-l~~-~di~~~l~~h~~~~adi 243 (402)
+.++.... +..|++++++.++..+.. ..+.++++.||+ +.. ..+..+++.+...++++
T Consensus 64 -~~~~~~~~--------~~~G~~~~i~~al~~~~~----~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~ 123 (186)
T cd04182 64 -VVVVINPD--------WEEGMSSSLAAGLEALPA----DADAVLILLADQPLVTAETLRALIDAFREDGAGI 123 (186)
T ss_pred -eEEEeCCC--------hhhCHHHHHHHHHHhccc----cCCEEEEEeCCCCCCCHHHHHHHHHHHHhCCCeE
Confidence 33333221 125899999999877641 358899999999 444 45778888776555443
No 78
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=99.51 E-value=2.8e-12 Score=123.12 Aligned_cols=218 Identities=13% Similarity=0.102 Sum_probs=130.9
Q ss_pred CCCeeEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHh-CCCCeEEEEccCCchhHHHHHHhhccCCCCcc
Q 015713 90 PKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCIN-SGFNKIFIMTQFNSFSLNRHLARSYNLGNGVN 168 (402)
Q Consensus 90 ~~~m~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~-~GI~~IiVv~~~~~~~i~~~l~~~y~~~~g~~ 168 (402)
++.+.+||||||.|+||+ ...||++++++|+ |||.|+++.+.. .++++|+|++++......+.+...+
T Consensus 22 ~~~i~aIILAAG~gsRmg---~~~pKqll~l~Gk-pll~~tl~~~~~~~~i~~IvVV~~~~~~~~~~~~~~~~------- 90 (252)
T PLN02728 22 EKSVSVILLAGGVGKRMG---ANMPKQYLPLLGQ-PIALYSLYTFARMPEVKEIVVVCDPSYRDVFEEAVENI------- 90 (252)
T ss_pred cCceEEEEEcccccccCC---CCCCcceeEECCe-EHHHHHHHHHHhCCCCCeEEEEeCHHHHHHHHHHHHhc-------
Confidence 455789999999999994 4579999999999 999999999998 4899999999876433333222222
Q ss_pred cCCCcEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCC--c-cCCc-cHHHHHHHHHhCCCcEE
Q 015713 169 FGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGD--H-LYRM-DYTEFLQKHIDTKADIT 244 (402)
Q Consensus 169 ~~~~~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD--~-l~~~-di~~~l~~h~~~~adit 244 (402)
+. .+.++. . | .+..++|++++..++ .+..+|+.+| . +... .+.++++...+.++ .
T Consensus 91 -~~-~i~~v~--g--g-------~~r~~SV~~gl~~l~------~~~~~VlihDaarP~vs~~~i~~li~~~~~~ga--~ 149 (252)
T PLN02728 91 -DV-PLKFAL--P--G-------KERQDSVFNGLQEVD------ANSELVCIHDSARPLVTSADIEKVLKDAAVHGA--A 149 (252)
T ss_pred -CC-ceEEcC--C--C-------CchHHHHHHHHHhcc------CCCCEEEEecCcCCCCCHHHHHHHHHHHhhCCe--E
Confidence 11 132221 1 1 145788999987764 1233455555 5 4444 46788887766654 4
Q ss_pred EEEEEcCCCCCCcceEEEECCCCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEehHHHHHHHHhh
Q 015713 245 VSCVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSS 324 (402)
Q Consensus 245 i~~~~~~~~~~~~~g~v~iD~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~~~~l~~ll~~~ 324 (402)
+.+.+..+ .+..+++++.|.+ .+....+ +..=-=-.|+.+.|.+..+..
T Consensus 150 i~~~~~~d------tik~v~~~~~v~~---t~~R~~l----------------------~~~QTPQ~F~~~~l~~a~~~~ 198 (252)
T PLN02728 150 VLGVPVKA------TIKEANSDSFVVK---TLDRKRL----------------------WEMQTPQVIKPELLRRGFELV 198 (252)
T ss_pred EEeecchh------hEEEecCCCceee---ccChHHe----------------------EEEeCCccchHHHHHHHHHHH
Confidence 55565543 2333455565543 2222111 000011356666666655443
Q ss_pred CCCCCchhhccHHhhhc-CCcEEEEEEcCeEEecCCHHHHHHHHhHhh
Q 015713 325 YPLSNDFGSEIIPASVK-DHNVQAFLFNDYWEDIGTIKSFFMPIWPSQ 371 (402)
Q Consensus 325 ~~~~~d~~~~ii~~li~-~~~v~a~~~~g~w~DIgtp~d~~~A~~~ll 371 (402)
..... +..|-...+.. ..+|..+.-+..-+=|.||+|+..|+..+.
T Consensus 199 ~~~~~-~~TDd~~~~~~~g~~V~~v~g~~~N~KITtpeDl~~a~~~l~ 245 (252)
T PLN02728 199 EREGL-EVTDDVSIVEALKHPVFITEGSYTNIKVTTPDDMLVAERILN 245 (252)
T ss_pred HhcCC-CcCcHHHHHHHcCCceEEEecCcccccCCCHHHHHHHHHHHh
Confidence 22211 12332232222 346666655556888999999999998665
No 79
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=99.50 E-value=9.1e-13 Score=117.51 Aligned_cols=110 Identities=24% Similarity=0.359 Sum_probs=86.9
Q ss_pred eeEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCCCCeEEEEccCCchhHHHHHHhhccCCCCcccCCC
Q 015713 93 VAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDG 172 (402)
Q Consensus 93 m~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~GI~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~~~ 172 (402)
|.+||+|||+||||. ..-|||++++|+ |||+|+++.+.+ .+++|+|++..+......|+...+
T Consensus 1 m~~iiMAGGrGtRmg----~~EKPlleV~Gk-pLI~~v~~al~~-~~d~i~v~isp~tp~t~~~~~~~g----------- 63 (177)
T COG2266 1 MMAIIMAGGRGTRMG----RPEKPLLEVCGK-PLIDRVLEALRK-IVDEIIVAISPHTPKTKEYLESVG----------- 63 (177)
T ss_pred CceEEecCCcccccC----CCcCcchhhCCc-cHHHHHHHHHHh-hcCcEEEEeCCCCHhHHHHHHhcC-----------
Confidence 569999999999995 256999999999 999999999988 799999999999999988886432
Q ss_pred cEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCccC-Ccc-HHHHHHHHH
Q 015713 173 FVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLY-RMD-YTEFLQKHI 237 (402)
Q Consensus 173 ~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~-~~d-i~~~l~~h~ 237 (402)
|+++.. +| .|...-++.++..+ ..|+|++++|..+ +.. +..+++.+.
T Consensus 64 -v~vi~t---pG-------~GYv~Dl~~al~~l-------~~P~lvvsaDLp~l~~~~i~~vi~~~~ 112 (177)
T COG2266 64 -VKVIET---PG-------EGYVEDLRFALESL-------GTPILVVSADLPFLNPSIIDSVIDAAA 112 (177)
T ss_pred -ceEEEc---CC-------CChHHHHHHHHHhc-------CCceEEEecccccCCHHHHHHHHHHHh
Confidence 566643 22 26777788777665 3599999999944 544 456666554
No 80
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=99.46 E-value=2.4e-12 Score=116.89 Aligned_cols=118 Identities=22% Similarity=0.281 Sum_probs=83.7
Q ss_pred eeEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCCCCeEEEEccCCchhHHHHHHhhccCCCCcccCCC
Q 015713 93 VAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDG 172 (402)
Q Consensus 93 m~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~GI~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~~~ 172 (402)
+.+||||||.||||. .+||+|++++|+ |||+|+++.+.. ++++|+|++++..+. +.... ++
T Consensus 1 ~~~iILAgG~s~Rmg----~~~K~l~~i~g~-pll~~~l~~l~~-~~~~ivv~~~~~~~~---~~~~~--------~~-- 61 (186)
T TIGR02665 1 ISGVILAGGRARRMG----GRDKGLVELGGK-PLIEHVLARLRP-QVSDLAISANRNPER---YAQAG--------FG-- 61 (186)
T ss_pred CeEEEEcCCccccCC----CCCCceeEECCE-EHHHHHHHHHHh-hCCEEEEEcCCCHHH---Hhhcc--------CC--
Confidence 468999999999995 259999999999 999999999976 599999999764321 11111 11
Q ss_pred cEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCc-cCCcc-HHHHHHHHHhCCCcE
Q 015713 173 FVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-LYRMD-YTEFLQKHIDTKADI 243 (402)
Q Consensus 173 ~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~-l~~~d-i~~~l~~h~~~~adi 243 (402)
+.++..... +..|+.++|+.++..++ .+.++|+.||+ +...+ +.++++.....++.+
T Consensus 62 -~~~i~~~~~-------~~~g~~~si~~al~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~ 120 (186)
T TIGR02665 62 -LPVVPDALA-------DFPGPLAGILAGLRWAG------TDWVLTVPCDTPFLPEDLVARLAAALEASDADI 120 (186)
T ss_pred -CcEEecCCC-------CCCCCHHHHHHHHHhcC------CCeEEEEecCCCcCCHHHHHHHHHHhhccCCcE
Confidence 233332211 23689999999987763 47899999999 55655 567776654444443
No 81
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=99.45 E-value=6e-12 Score=115.11 Aligned_cols=191 Identities=17% Similarity=0.241 Sum_probs=130.8
Q ss_pred CCCeeEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCCCCeEEEEccCCchhHHHHHHhhccCCCCccc
Q 015713 90 PKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNF 169 (402)
Q Consensus 90 ~~~m~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~GI~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~ 169 (402)
+..+.+||||||.|+||. .+|-|.|+.|+ ||+.++++.+..++.++++|+++|.......... .
T Consensus 3 ~~~v~~VvLAAGrssRmG-----~~KlLap~~g~-plv~~~~~~a~~a~~~~vivV~g~~~~~~~~a~~----~------ 66 (199)
T COG2068 3 PSTVAAVVLAAGRSSRMG-----QPKLLAPLDGK-PLVRASAETALSAGLDRVIVVTGHRVAEAVEALL----A------ 66 (199)
T ss_pred CcceEEEEEcccccccCC-----CcceecccCCC-cHHHHHHHHHHhcCCCeEEEEeCcchhhHHHhhh----c------
Confidence 346889999999999996 89999999999 9999999999999999999999997322222111 1
Q ss_pred CCCcEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCc--cCCccHHHHHHHHHhCCCcEEEEE
Q 015713 170 GDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH--LYRMDYTEFLQKHIDTKADITVSC 247 (402)
Q Consensus 170 ~~~~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~--l~~~di~~~l~~h~~~~aditi~~ 247 (402)
+ ..+.++... +|-+|.+.+++.+...+.. ..+.++++.||+ +...++..+++.+...+ .+ +
T Consensus 67 ~-~~~~~v~np--------d~~~Gls~Sl~ag~~a~~~----~~~~v~~~lgDmP~V~~~t~~rl~~~~~~~~-~~---v 129 (199)
T COG2068 67 Q-LGVTVVVNP--------DYAQGLSTSLKAGLRAADA----EGDGVVLMLGDMPQVTPATVRRLIAAFRARG-AA---V 129 (199)
T ss_pred c-CCeEEEeCc--------chhhhHhHHHHHHHHhccc----CCCeEEEEeCCCCCCCHHHHHHHHHhccccC-ce---e
Confidence 1 124555433 3457999999999888752 225899999999 55667888888776663 21 2
Q ss_pred EEcCCCCCCcceEEEECCCCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEehHHHHHHHHhhCCC
Q 015713 248 VPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPL 327 (402)
Q Consensus 248 ~~~~~~~~~~~g~v~iD~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~~~~l~~ll~~~~~~ 327 (402)
.+.. +| +...+ .+|+++.|..+.+-
T Consensus 130 ~p~~--------------~g-------~rG~P------------------------------v~~~~~~~~~l~~l---- 154 (199)
T COG2068 130 RPVY--------------GG-------ARGHP------------------------------VLLSKDLFPALARL---- 154 (199)
T ss_pred eeec--------------cC-------CcCCc------------------------------eeechhHHHHHhhc----
Confidence 2211 11 11111 35667777554332
Q ss_pred CCchhhccHHhhhcCCcEEEE--EE-cCeEEecCCHHHHHHHHhHhh
Q 015713 328 SNDFGSEIIPASVKDHNVQAF--LF-NDYWEDIGTIKSFFMPIWPSQ 371 (402)
Q Consensus 328 ~~d~~~~ii~~li~~~~v~a~--~~-~g~w~DIgtp~d~~~A~~~ll 371 (402)
..| .-...+++++.+..+ .. .+.-.|||||+||..++..+.
T Consensus 155 ~GD---~G~r~ll~~~~~~~~~V~~~~g~llDVDTped~~~a~~~~~ 198 (199)
T COG2068 155 SGD---VGARQLLEEGGLPLVEVEVDAGVLLDVDTPEDLARAQDLLR 198 (199)
T ss_pred CCc---hhHHHHHHhcCcceEeeccCCceEecCCCHHHHHHHHHhhc
Confidence 122 124566666544444 33 568999999999999998764
No 82
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.42 E-value=9.7e-12 Score=115.20 Aligned_cols=112 Identities=25% Similarity=0.271 Sum_probs=81.0
Q ss_pred CCeeEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCCCCeEEEEccCCchhHHHHHHhhccCCCCcccC
Q 015713 91 KNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFG 170 (402)
Q Consensus 91 ~~m~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~GI~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~ 170 (402)
+.+.+||||||.|+||+ .+|++++++|+ |||+|+++.+... +++|+|++++. +.. ..+. ..
T Consensus 6 ~~~~~vILAgG~s~Rmg-----~~K~ll~~~g~-~ll~~~i~~l~~~-~~~ivvv~~~~-~~~-~~~~-----~~----- 66 (200)
T PRK02726 6 NNLVALILAGGKSSRMG-----QDKALLPWQGV-PLLQRVARIAAAC-ADEVYIITPWP-ERY-QSLL-----PP----- 66 (200)
T ss_pred CCceEEEEcCCCcccCC-----CCceeeEECCE-eHHHHHHHHHHhh-CCEEEEECCCH-HHH-Hhhc-----cC-----
Confidence 45789999999999994 48999999999 9999999999764 79999988642 211 1110 10
Q ss_pred CCcEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCc-cCCcc-HHHHHHHHH
Q 015713 171 DGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-LYRMD-YTEFLQKHI 237 (402)
Q Consensus 171 ~~~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~-l~~~d-i~~~l~~h~ 237 (402)
.+.++...+ +.+|..++++.++..++ .+.++|+.||+ +...+ +..+++.+.
T Consensus 67 --~~~~i~~~~--------~~~G~~~si~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~~ 119 (200)
T PRK02726 67 --GCHWLREPP--------PSQGPLVAFAQGLPQIK------TEWVLLLACDLPRLTVDVLQEWLQQLE 119 (200)
T ss_pred --CCeEecCCC--------CCCChHHHHHHHHHhCC------CCcEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 144443322 23689999999988763 37899999999 45544 567776653
No 83
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=99.42 E-value=1.8e-11 Score=113.09 Aligned_cols=235 Identities=17% Similarity=0.254 Sum_probs=161.6
Q ss_pred CeeEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCCCCeEEEEccCCchhHHHHHHhhccCCCCcccCC
Q 015713 92 NVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGD 171 (402)
Q Consensus 92 ~m~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~GI~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~~ 171 (402)
+...||+|-=..||| --|||-.|+|+ |||.|+.+++.++|+++++|.| +++.+.+++.. ||.
T Consensus 3 ~~~viIPAR~~STRL------pgKPLadI~Gk-pmI~rV~e~a~~s~~~rvvVAT--Dde~I~~av~~---------~G~ 64 (247)
T COG1212 3 KFVVIIPARLASTRL------PGKPLADIGGK-PMIVRVAERALKSGADRVVVAT--DDERIAEAVQA---------FGG 64 (247)
T ss_pred ceEEEEecchhcccC------CCCchhhhCCc-hHHHHHHHHHHHcCCCeEEEEc--CCHHHHHHHHH---------hCC
Confidence 456899998889999 67999999999 9999999999999999999999 56788888753 232
Q ss_pred CcEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCc-cCC-ccHHHHHHHHHhCCCcEEEEEEE
Q 015713 172 GFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-LYR-MDYTEFLQKHIDTKADITVSCVP 249 (402)
Q Consensus 172 ~~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~-l~~-~di~~~l~~h~~~~aditi~~~~ 249 (402)
+++-...+ ...|| +-+..+...+. ....+-++=+.||. +.. ..+.++++.....++++.-++.+
T Consensus 65 ---~avmT~~~-------h~SGT-dR~~Ev~~~l~---~~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~~~~~aTl~~~ 130 (247)
T COG1212 65 ---EAVMTSKD-------HQSGT-DRLAEVVEKLG---LPDDEIIVNVQGDEPFIEPEVIRAVAENLENSNADMATLAVK 130 (247)
T ss_pred ---EEEecCCC-------CCCcc-HHHHHHHHhcC---CCcceEEEEccCCCCCCCHHHHHHHHHHHHhCCcceeeeeee
Confidence 22211111 12366 44555554442 23456788899999 444 45778888877777887666666
Q ss_pred cCCCC---CCcceEEEECCCCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEehHHHHHHHHhhCC
Q 015713 250 MDDCR---ASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYP 326 (402)
Q Consensus 250 ~~~~~---~~~~g~v~iD~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~~~~l~~ll~~~~~ 326 (402)
..++. ..+--.+.+|.+|+.+.|..-|-+-.-+. . | ..+++.-.|||.|+.++|.++..+...
T Consensus 131 i~~~ee~~nPN~VKvV~d~~g~ALYFSRs~iP~~rd~-~------~-------~~p~l~HIGIYayr~~~L~~f~~~~ps 196 (247)
T COG1212 131 ITDEEEAFNPNVVKVVLDKEGYALYFSRAPIPYGRDN-F------G-------GTPFLRHIGIYAYRAGFLERFVALKPS 196 (247)
T ss_pred cCCHHHhcCCCcEEEEEcCCCcEEEEEcCCCCCcccc-c------C-------CcchhheeehHHhHHHHHHHHHhcCCc
Confidence 65421 33444566899999999998776432110 0 0 025778899999999999988765321
Q ss_pred CCCch-hhccHHhhhcCCcEEEEEEcCeE-EecCCHHHHHHHHhHhhc
Q 015713 327 LSNDF-GSEIIPASVKDHNVQAFLFNDYW-EDIGTIKSFFMPIWPSQN 372 (402)
Q Consensus 327 ~~~d~-~~~ii~~li~~~~v~a~~~~g~w-~DIgtp~d~~~A~~~ll~ 372 (402)
.-... .-+-|..+-...++.+......- ..|||++||.+|.+.+.+
T Consensus 197 ~LE~~E~LEQLR~Le~G~kI~v~i~~~~p~~gVDT~EDLe~v~~~~~~ 244 (247)
T COG1212 197 PLEKIESLEQLRVLENGEKIHVEIVKEVPSIGVDTPEDLERVRKILSN 244 (247)
T ss_pred hhHHHHHHHHHHHHHcCCeeEEEEeccCCCCCCCCHHHHHHHHHHHHh
Confidence 11110 01234444445688888887654 999999999999987754
No 84
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.40 E-value=1.9e-11 Score=112.88 Aligned_cols=183 Identities=16% Similarity=0.283 Sum_probs=112.8
Q ss_pred CCCCeeEEEEcCCCCCcCCCCCCCCCccceecCC-cchHHHHHHHHhHhCCCCeEEEEccCCchhHHHHHHhhccCCCCc
Q 015713 89 DPKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGG-NYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGV 167 (402)
Q Consensus 89 ~~~~m~AIILAaG~GtRL~PlT~~~PKpLvpIgG-~~pLId~~i~~l~~~GI~~IiVv~~~~~~~i~~~l~~~y~~~~g~ 167 (402)
.++++.+||||||.|+||+ .+|+++|++| + |||+|+++.+... +++|+|++++ ... . +
T Consensus 5 ~~~~i~~vILAgG~s~RmG-----~~K~ll~~~g~~-~ll~~~i~~l~~~-~~~vvvv~~~--~~~----~----~---- 63 (196)
T PRK00560 5 MIDNIPCVILAGGKSSRMG-----ENKALLPFGSYS-SLLEYQYTRLLKL-FKKVYISTKD--KKF----E----F---- 63 (196)
T ss_pred cccCceEEEECCcccccCC-----CCceEEEeCCCC-cHHHHHHHHHHHh-CCEEEEEECc--hhc----c----c----
Confidence 3456889999999999993 6999999999 9 9999999999877 8999999875 111 0 1
Q ss_pred ccCCCcEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCc-cCCccH-HHHHHHHHhCCCcEEE
Q 015713 168 NFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-LYRMDY-TEFLQKHIDTKADITV 245 (402)
Q Consensus 168 ~~~~~~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~-l~~~di-~~~l~~h~~~~aditi 245 (402)
+ ++++...+.. ..|...++..++... ..+.++|+.||+ +...++ .+++. ..+..++
T Consensus 64 --~---~~~v~d~~~~-------~~gpl~gi~~~l~~~------~~~~vlv~~~D~P~i~~~~i~~l~~---~~~~~~~- 121 (196)
T PRK00560 64 --N---APFLLEKESD-------LFSPLFGIINAFLTL------QTPEIFFISVDTPFVSFESIKKLCG---KENFSVT- 121 (196)
T ss_pred --C---CcEEecCCCC-------CCCcHHHHHHHHHhc------CCCeEEEEecCcCcCCHHHHHHHHh---cCCCCEE-
Confidence 1 2333321111 236676776655433 358999999999 446554 44421 1222211
Q ss_pred EEEEcCCCCCCcceEEEECCCCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEehHHHHHHHHhhC
Q 015713 246 SCVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSY 325 (402)
Q Consensus 246 ~~~~~~~~~~~~~g~v~iD~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~~~~l~~ll~~~~ 325 (402)
....+++ .. . -+.+|+++.+..+.....
T Consensus 122 ----------------~~~~~~~--------~~------------------------P----l~al~~~~~~~~l~~~l~ 149 (196)
T PRK00560 122 ----------------YAKSPTK--------EH------------------------Y----LISLWHQSLLNALIYALK 149 (196)
T ss_pred ----------------EEccCCc--------ee------------------------e----eEEEEcHHHHHHHHHHHH
Confidence 1111111 00 0 125788888876643221
Q ss_pred CCCCchhhccHHhhhcCCcEEEEEEc--CeEEecCCHHHHHHHHhHhh
Q 015713 326 PLSNDFGSEIIPASVKDHNVQAFLFN--DYWEDIGTIKSFFMPIWPSQ 371 (402)
Q Consensus 326 ~~~~d~~~~ii~~li~~~~v~a~~~~--g~w~DIgtp~d~~~A~~~ll 371 (402)
.+. .-+..+++..++..+.+. +.|.||+||+||.++.+.+.
T Consensus 150 ~~~-----~~~~~ll~~~~~~~v~~~~~~~~~dinT~eDl~~~~~~~~ 192 (196)
T PRK00560 150 TQN-----YRLSDLVKNTSSQAVHFEDEEEFLNLNTLKDYELALQILK 192 (196)
T ss_pred hCC-----ccHHHHHHHCCcEEecCCCCccccCCCCHHHHHHHHHHHH
Confidence 111 123444444555555554 36889999999999877654
No 85
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=99.38 E-value=1.7e-11 Score=123.76 Aligned_cols=121 Identities=21% Similarity=0.306 Sum_probs=85.8
Q ss_pred CCCeeEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCCCCeEEEEccCCchhHHHHHHhhccCCCCccc
Q 015713 90 PKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNF 169 (402)
Q Consensus 90 ~~~m~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~GI~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~ 169 (402)
|+.+.+||||||.|+||+ ..||+|+|++|+ |||+|+++.+.. ++++|+|++....+.+.+++ . +
T Consensus 3 ~~~i~~VILAgG~s~Rmg----g~~K~ll~i~Gk-pll~~~i~~l~~-~~~~iivvv~~~~~~~~~~~------~-~--- 66 (366)
T PRK14489 3 ISQIAGVILAGGLSRRMN----GRDKALILLGGK-PLIERVVDRLRP-QFARIHLNINRDPARYQDLF------P-G--- 66 (366)
T ss_pred CCCceEEEEcCCcccCCC----CCCCceeEECCe-eHHHHHHHHHHh-hCCEEEEEcCCCHHHHHhhc------c-C---
Confidence 456889999999999995 379999999999 999999999975 49999997765544332221 1 0
Q ss_pred CCCcEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCc-cCCcc-HHHHHHHHHhCCCcE
Q 015713 170 GDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-LYRMD-YTEFLQKHIDTKADI 243 (402)
Q Consensus 170 ~~~~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~-l~~~d-i~~~l~~h~~~~adi 243 (402)
+.++...+. + ..|..++|+.++..++ .+.++|+.||+ ++..+ +..+++.+...++++
T Consensus 67 ----~~~i~d~~~-g------~~G~~~si~~gl~~~~------~~~vlv~~~D~P~i~~~~i~~L~~~~~~~~~~~ 125 (366)
T PRK14489 67 ----LPVYPDILP-G------FQGPLSGILAGLEHAD------SEYLFVVACDTPFLPENLVKRLSKALAIEGADI 125 (366)
T ss_pred ----CcEEecCCC-C------CCChHHHHHHHHHhcC------CCcEEEeeCCcCCCCHHHHHHHHHHhhccCCeE
Confidence 122222221 1 2488999999887653 47799999998 55555 567777655555554
No 86
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=99.37 E-value=9.6e-11 Score=110.26 Aligned_cols=215 Identities=16% Similarity=0.249 Sum_probs=131.0
Q ss_pred eeEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHh-CCCCeEEEEccCCchhHHHHHHhhccCCCCcccCC
Q 015713 93 VAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCIN-SGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGD 171 (402)
Q Consensus 93 m~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~-~GI~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~~ 171 (402)
+.+||||||.|+||. ...||.+++++|+ |+|.|+++.+.+ ..|++|+|++........+.+...
T Consensus 1 V~aIilAaG~G~R~g---~~~pKQf~~l~Gk-pvl~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~----------- 65 (221)
T PF01128_consen 1 VAAIILAAGSGSRMG---SGIPKQFLELGGK-PVLEYTLEAFLASPEIDEIVVVVPPEDIDYVEELLSK----------- 65 (221)
T ss_dssp EEEEEEESS-STCCT---SSS-GGGSEETTE-EHHHHHHHHHHTTTTESEEEEEESGGGHHHHHHHHHH-----------
T ss_pred CEEEEeCCccchhcC---cCCCCeeeEECCe-EeHHHHHHHHhcCCCCCeEEEEecchhHHHHHHhhcC-----------
Confidence 469999999999995 5789999999999 999999999988 469999999987653333333221
Q ss_pred CcEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCc-cCCcc-HHHHHHHHHhCCCcEEEEEEE
Q 015713 172 GFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-LYRMD-YTEFLQKHIDTKADITVSCVP 249 (402)
Q Consensus 172 ~~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~-l~~~d-i~~~l~~h~~~~aditi~~~~ 249 (402)
..+.++.-. ....+++++++..+.+ ..+.|+|..|=- +...+ +.++++...+ +.++.+.+.+
T Consensus 66 ~~v~iv~GG-----------~tR~~SV~ngL~~l~~----~~d~VlIHDaaRPfv~~~~i~~~i~~~~~-~~~aai~~~p 129 (221)
T PF01128_consen 66 KKVKIVEGG-----------ATRQESVYNGLKALAE----DCDIVLIHDAARPFVSPELIDRVIEAARE-GHGAAIPALP 129 (221)
T ss_dssp TTEEEEE-------------SSHHHHHHHHHHCHHC----TSSEEEEEETTSTT--HHHHHHHHHHHHH-TCSEEEEEEE
T ss_pred CCEEEecCC-----------hhHHHHHHHHHHHHHc----CCCEEEEEccccCCCCHHHHHHHHHHHHh-hcCcEEEEEe
Confidence 125555421 1367899999988863 236788877766 44443 6778877655 2344566777
Q ss_pred cCCCCCCcceEEEECCCCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEehHHHHHHHHhhCCCCC
Q 015713 250 MDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSN 329 (402)
Q Consensus 250 ~~~~~~~~~g~v~iD~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~~~~l~~ll~~~~~~~~ 329 (402)
+.+ .+..++++|.|.+...... .+.-=-=-.|+.+.|.+..+.......
T Consensus 130 ~~D------Tik~v~~~~~v~~tldR~~-------------------------l~~~QTPQ~F~~~~l~~a~~~a~~~~~ 178 (221)
T PF01128_consen 130 VTD------TIKRVDDDGFVTETLDRSK-------------------------LWAVQTPQAFRFELLLEAYEKADEEGF 178 (221)
T ss_dssp -SS------EEEEESTTSBEEEEETGGG-------------------------EEEEEEEEEEEHHHHHHHHHTHHHHTH
T ss_pred ccc------cEEEEecCCcccccCCHHH-------------------------eeeecCCCeecHHHHHHHHHHHHhcCC
Confidence 654 3556777787776553211 111112247778877776654321111
Q ss_pred chhhc--cHHhhhcCCcEEEEEEcCeEEecCCHHHHHHHHhHhh
Q 015713 330 DFGSE--IIPASVKDHNVQAFLFNDYWEDIGTIKSFFMPIWPSQ 371 (402)
Q Consensus 330 d~~~~--ii~~li~~~~v~a~~~~g~w~DIgtp~d~~~A~~~ll 371 (402)
.+-.| ++..+ ..+|....-+..-+=|.||+|+.-|+..|.
T Consensus 179 ~~tDdasl~~~~--g~~v~~V~G~~~N~KIT~peDl~~ae~ll~ 220 (221)
T PF01128_consen 179 EFTDDASLVEAA--GKKVAIVEGSPRNIKITTPEDLELAEALLK 220 (221)
T ss_dssp HHSSHHHHHHHT--TS-EEEEE--TTG----SHHHHHHHHHHHH
T ss_pred CccCHHHHHHHc--CCCEEEEeCCCCceeECCHHHHHHHHHHhc
Confidence 12111 22222 456766665556788899999999998653
No 87
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=99.31 E-value=1.2e-10 Score=110.00 Aligned_cols=115 Identities=26% Similarity=0.345 Sum_probs=79.6
Q ss_pred EEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCC-CCeEEEEccCCc--hhHHHHHHhhccCCCCcccCC
Q 015713 95 AIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSG-FNKIFIMTQFNS--FSLNRHLARSYNLGNGVNFGD 171 (402)
Q Consensus 95 AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~G-I~~IiVv~~~~~--~~i~~~l~~~y~~~~g~~~~~ 171 (402)
|||||||.++||. +|.|++++|+ |||+|+++.+..++ +++|+|+++... +.+.+++. .+ +
T Consensus 2 aiIlA~G~S~R~~------~K~ll~l~Gk-pli~~~i~~l~~~~~~~~ivVv~~~~~~~~~i~~~~~-~~--------~- 64 (233)
T cd02518 2 AIIQARMGSTRLP------GKVLKPLGGK-PLLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALAK-KL--------G- 64 (233)
T ss_pred EEEeeCCCCCCCC------CCcccccCCc-cHHHHHHHHHHhCCCCCeEEEECCCCcccHHHHHHHH-Hc--------C-
Confidence 7999999999992 5999999999 99999999999987 899999998765 45555443 11 1
Q ss_pred CcEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCc-cCC-ccHHHHHHHHHhCCCcEE
Q 015713 172 GFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-LYR-MDYTEFLQKHIDTKADIT 244 (402)
Q Consensus 172 ~~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~-l~~-~di~~~l~~h~~~~adit 244 (402)
+.++.... .+.+..+...++. ...+.++++.||+ +.. ..+.++++.+...+.+++
T Consensus 65 --v~~v~~~~-------------~~~l~~~~~~~~~---~~~d~vli~~~D~P~i~~~~i~~li~~~~~~~~~~~ 121 (233)
T cd02518 65 --VKVFRGSE-------------EDVLGRYYQAAEE---YNADVVVRITGDCPLIDPEIIDAVIRLFLKSGADYT 121 (233)
T ss_pred --CeEEECCc-------------hhHHHHHHHHHHH---cCCCEEEEeCCCCCCCCHHHHHHHHHHHHhCCCCEE
Confidence 33432211 0122222222221 2357899999999 444 457889988877666654
No 88
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=99.29 E-value=2e-10 Score=116.17 Aligned_cols=113 Identities=12% Similarity=0.170 Sum_probs=78.5
Q ss_pred CCCCCCeeEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCCCCeEEEEccCCchhHHHHHHhhccCCCC
Q 015713 87 QADPKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNG 166 (402)
Q Consensus 87 ~~~~~~m~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~GI~~IiVv~~~~~~~i~~~l~~~y~~~~g 166 (402)
+.++..+.+||||||.|+||+ .+|+|++++|+ |||+|+++.+.. .+++|+|+++..... .+. .+
T Consensus 169 ~~~~~~i~~iILAGG~SsRmG-----~~K~ll~~~Gk-~ll~~~l~~l~~-~~~~vvV~~~~~~~~---~~~-~~----- 232 (369)
T PRK14490 169 RAEEVPLSGLVLAGGRSSRMG-----SDKALLSYHES-NQLVHTAALLRP-HCQEVFISCRAEQAE---QYR-SF----- 232 (369)
T ss_pred ccccCCceEEEEcCCccccCC-----CCcEEEEECCc-cHHHHHHHHHHh-hCCEEEEEeCCchhh---HHh-hc-----
Confidence 344566889999999999994 59999999999 999999999976 478898887654211 111 11
Q ss_pred cccCCCcEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCc-cCCcc-HHHHHHH
Q 015713 167 VNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-LYRMD-YTEFLQK 235 (402)
Q Consensus 167 ~~~~~~~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~-l~~~d-i~~~l~~ 235 (402)
+ +.++..... .+|...++..++... ..+.++|+.||+ +...+ +..+++.
T Consensus 233 ---~---v~~i~d~~~--------~~Gpl~gi~~al~~~------~~~~~lv~~~DmP~i~~~~i~~L~~~ 283 (369)
T PRK14490 233 ---G---IPLITDSYL--------DIGPLGGLLSAQRHH------PDAAWLVVACDLPFLDEATLQQLVEG 283 (369)
T ss_pred ---C---CcEEeCCCC--------CCCcHHHHHHHHHhC------CCCcEEEEeCCcCCCCHHHHHHHHHh
Confidence 1 344433221 147788888776543 346899999999 55555 4555543
No 89
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=99.28 E-value=5.9e-11 Score=108.56 Aligned_cols=124 Identities=20% Similarity=0.268 Sum_probs=86.3
Q ss_pred eEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCCCCeEEEEccCCchhHHHHHHhhccCCCCcccCCCc
Q 015713 94 AAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGF 173 (402)
Q Consensus 94 ~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~GI~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~~~~ 173 (402)
.+||||||.|+||+ .+|.+++++|+ |||+|+++.+...++.+|+|++++..+.+ ..+.+.. ... . .
T Consensus 2 ~~vILAgG~s~Rmg-----~~K~ll~~~g~-~ll~~~i~~~~~~~~~~i~vv~~~~~~~~-~~~~~~~-~~~---~---~ 67 (190)
T TIGR03202 2 VAIYLAAGQSRRMG-----ENKLALPLGET-TLGSASLKTALSSRLSKVIVVIGEKYAHL-SWLDPYL-LAD---E---R 67 (190)
T ss_pred eEEEEcCCccccCC-----CCceeceeCCc-cHHHHHHHHHHhCCCCcEEEEeCCccchh-hhhhHhh-hcC---C---C
Confidence 58999999999995 37999999999 99999999988889999999998765432 1121111 100 0 1
Q ss_pred EEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCc-cCCcc-HHHHHHHHHhCCCc
Q 015713 174 VEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-LYRMD-YTEFLQKHIDTKAD 242 (402)
Q Consensus 174 V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~-l~~~d-i~~~l~~h~~~~ad 242 (402)
+.++... +|..|.+++|+.++..+.+ ...+.++|+.||+ +...+ +..+++.......+
T Consensus 68 ~~~~~~~--------~~~~G~~~si~~gl~~~~~---~~~d~vlv~~~D~P~v~~~~i~~L~~~~~~~~~~ 127 (190)
T TIGR03202 68 IMLVCCR--------DACEGQAHSLKCGLRKAEA---MGADAVVILLADQPFLTADVINALLALAKRRPDD 127 (190)
T ss_pred eEEEECC--------ChhhhHHHHHHHHHHHhcc---CCCCeEEEEeCCCCCCCHHHHHHHHHHHhhCCCC
Confidence 3443222 2335889999999887631 2457899999999 45544 56777665444433
No 90
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=99.26 E-value=2.1e-10 Score=105.78 Aligned_cols=113 Identities=23% Similarity=0.319 Sum_probs=81.2
Q ss_pred CCCeeEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCCCCeEEEEccCCchhHHHHHHhhccCCCCccc
Q 015713 90 PKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNF 169 (402)
Q Consensus 90 ~~~m~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~GI~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~ 169 (402)
+..|.+||||||.|+|| .+|+|++++|+ |||+|+++.|....- .++|+...+.+. +. . +
T Consensus 2 ~~~~~~vILAGG~srRm------~dK~l~~~~g~-~lie~v~~~L~~~~~-~vvi~~~~~~~~---~~--~--------~ 60 (192)
T COG0746 2 MTPMTGVILAGGKSRRM------RDKALLPLNGR-PLIEHVIDRLRPQVD-VVVISANRNQGR---YA--E--------F 60 (192)
T ss_pred CCCceEEEecCCccccc------cccccceeCCe-EHHHHHHHHhcccCC-EEEEeCCCchhh---hh--c--------c
Confidence 45789999999999999 68999999999 999999999988744 555555443321 11 1 1
Q ss_pred CCCcEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCc-cCCccH-HHHHHHHHhCC
Q 015713 170 GDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-LYRMDY-TEFLQKHIDTK 240 (402)
Q Consensus 170 ~~~~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~-l~~~di-~~~l~~h~~~~ 240 (402)
+ ++++.+... ++ |...+++.++..+ ..+.++++.||+ +...++ ..+.+.....+
T Consensus 61 g---~~vv~D~~~-------~~-GPL~Gi~~al~~~------~~~~~~v~~~D~P~i~~~lv~~l~~~~~~~~ 116 (192)
T COG0746 61 G---LPVVPDELP-------GF-GPLAGILAALRHF------GTEWVLVLPCDMPFIPPELVERLLSAFKQTG 116 (192)
T ss_pred C---CceeecCCC-------CC-CCHHHHHHHHHhC------CCCeEEEEecCCCCCCHHHHHHHHHhhcccC
Confidence 2 455554332 12 8999999998776 368999999999 555665 55555544444
No 91
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=99.24 E-value=8.9e-10 Score=103.80 Aligned_cols=222 Identities=15% Similarity=0.193 Sum_probs=138.4
Q ss_pred CCeeEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhC-CCCeEEEEccCCc-hhHHHHHHhhccCCCCcc
Q 015713 91 KNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINS-GFNKIFIMTQFNS-FSLNRHLARSYNLGNGVN 168 (402)
Q Consensus 91 ~~m~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~-GI~~IiVv~~~~~-~~i~~~l~~~y~~~~g~~ 168 (402)
+.+.+||||||.|+||.. ..||.+++++|+ |||+|+++.+..+ .|++|+|+++... ..+.++.. +
T Consensus 3 ~~~~~vilAaG~G~R~~~---~~pKq~l~l~g~-pll~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~--~------- 69 (230)
T COG1211 3 MMVSAVILAAGFGSRMGN---PVPKQYLELGGR-PLLEHTLEAFLESPAIDEIVVVVSPEDDPYFEKLPK--L------- 69 (230)
T ss_pred ceEEEEEEcCccccccCC---CCCceEEEECCE-EehHHHHHHHHhCcCCCeEEEEEChhhhHHHHHhhh--h-------
Confidence 457899999999999954 899999999999 9999999999986 4899999998733 33333221 1
Q ss_pred cCCCcEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCc-cCC-ccHHHHHHHHHhCCCcEEEE
Q 015713 169 FGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-LYR-MDYTEFLQKHIDTKADITVS 246 (402)
Q Consensus 169 ~~~~~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~-l~~-~di~~~l~~h~~~~aditi~ 246 (402)
.....|.++..- ....++++.++..+.. ...+.|||+.+== +.. ..+.++++...+. .+.+.
T Consensus 70 ~~~~~v~~v~GG-----------~~R~~SV~~gL~~~~~---~~~~~VlvHDaaRPf~~~~~i~~li~~~~~~--~aai~ 133 (230)
T COG1211 70 SADKRVEVVKGG-----------ATRQESVYNGLQALSK---YDSDWVLVHDAARPFLTPKLIKRLIELADKY--GAAIL 133 (230)
T ss_pred ccCCeEEEecCC-----------ccHHHHHHHHHHHhhc---cCCCEEEEeccccCCCCHHHHHHHHHhhccC--CcEEE
Confidence 011225554321 2468999999988862 2356777776665 333 4567788444333 44566
Q ss_pred EEEcCCCCCCcceEEEECCCCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEehHHHHHHHHhhCC
Q 015713 247 CVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYP 326 (402)
Q Consensus 247 ~~~~~~~~~~~~g~v~iD~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~~~~l~~ll~~~~~ 326 (402)
+.|+.+ .+...+++|.|.+......--. +.. | -.|+.+.|.+.+.....
T Consensus 134 alpv~D------Tik~~~~~~~i~~t~~R~~l~~-----------~QT-------P-------Q~F~~~~L~~a~~~a~~ 182 (230)
T COG1211 134 ALPVTD------TLKRVDADGNIVETVDRSGLWA-----------AQT-------P-------QAFRLELLKQALARAFA 182 (230)
T ss_pred EeeccC------cEEEecCCCCeeeccChhhhhh-----------hhC-------C-------ccccHHHHHHHHHHHHh
Confidence 777654 3444555666665443221100 000 1 25666777766654432
Q ss_pred CCCchhhccHHhhhcCCcEEEEEEcCeEEecCCHHHHHHHHhHhhc
Q 015713 327 LSNDFGSEIIPASVKDHNVQAFLFNDYWEDIGTIKSFFMPIWPSQN 372 (402)
Q Consensus 327 ~~~d~~~~ii~~li~~~~v~a~~~~g~w~DIgtp~d~~~A~~~ll~ 372 (402)
...++..|.--.....+++..+.-+-+-+=|-||+||.-|+..+.+
T Consensus 183 ~~~~~tDdas~~e~~G~~v~lV~G~~~n~KiTtpeDL~~a~~il~~ 228 (230)
T COG1211 183 EGREITDDASAIEKAGGPVSLVEGSADNFKITTPEDLEIAEAILRR 228 (230)
T ss_pred cCCCcCCHHHHHHHcCCCeEEEecCcceeEecCHHHHHHHHHHhcC
Confidence 2222222222112224577666656678889999999999987654
No 92
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=99.15 E-value=2.5e-09 Score=106.22 Aligned_cols=217 Identities=18% Similarity=0.254 Sum_probs=131.0
Q ss_pred CCeeEEEEcCCCCCcCCCCCCCCCccceecC---CcchHHHHHHHHhHhCC-----------CCeEEEEcc-CCchhHHH
Q 015713 91 KNVAAIILGGGAGTRLFPLTNRRAKPAVPIG---GNYRLIDIPMSNCINSG-----------FNKIFIMTQ-FNSFSLNR 155 (402)
Q Consensus 91 ~~m~AIILAaG~GtRL~PlT~~~PKpLvpIg---G~~pLId~~i~~l~~~G-----------I~~IiVv~~-~~~~~i~~ 155 (402)
.+|.+||||||.|||| +...||+|+||+ |+ |++++.++.+...+ .-.++|+|+ +..+.+.+
T Consensus 14 ~~va~viLaGG~GTRL---g~~~PK~l~pv~~~~~k-~ll~~~~e~l~~l~~~~~~~~~~~~~ip~~imtS~~t~~~t~~ 89 (323)
T cd04193 14 GKVAVLLLAGGQGTRL---GFDGPKGMFPVGLPSKK-SLFQLQAERILKLQELAGEASGKKVPIPWYIMTSEATHEETRK 89 (323)
T ss_pred CCEEEEEECCCccccc---CCCCCeEEEEecCCCCC-cHHHHHHHHHHHHHHHHhhccCCCCCceEEEEcChhHhHHHHH
Confidence 3688999999999999 788999999998 67 99999999998842 124557777 78899999
Q ss_pred HHHhhccCCCC---cc-cCCCcEEEEecccCC--C-cCCcc-ccCChHHHHHHHHH--HHHhhhcCCCceEEEEcCCcc-
Q 015713 156 HLARSYNLGNG---VN-FGDGFVEVLAATQTP--G-EAGKK-WFQGTADAVRQFIW--VFEDAKNKNVENVLILSGDHL- 224 (402)
Q Consensus 156 ~l~~~y~~~~g---~~-~~~~~V~vl~~~q~~--~-~~g~~-~~~Gta~Al~~~~~--~l~~~~~~~~e~~Lvl~gD~l- 224 (402)
++.+...|+-. +. |..+.+..+..+... . ..... .+-|.++-...... .++++...+.+++.|.+.|.+
T Consensus 90 ~~~~~~~fGl~~~~i~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~L 169 (323)
T cd04193 90 FFKENNYFGLDPEQVHFFQQGMLPCVDFDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKKRGIKYIHVYSVDNIL 169 (323)
T ss_pred HHHhCCcCCCCCceEEEEecCceeeEcCCCccccCCCCccccCCCCchHHHHHHHHCChHHHHHhCCCEEEEEEecCccc
Confidence 98753213311 00 111112222111100 0 00111 23477666554332 455555568899999999994
Q ss_pred CCccHHHHHHHHHhCCCcEEEEEEEcCCCCCCcceE-EEECCCCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCc
Q 015713 225 YRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGL-MKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPY 303 (402)
Q Consensus 225 ~~~di~~~l~~h~~~~aditi~~~~~~~~~~~~~g~-v~iD~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~ 303 (402)
...--..++-.+.++++++++-+.+.... ...-|. +..|..-.|+++.|-|....... . +.+.+ ..+
T Consensus 170 ~~~~Dp~~lG~~~~~~~~~~~kvv~k~~~-~ekvG~l~~~~g~~~vvEysel~~~~~~~~-~-~~g~l---------~f~ 237 (323)
T cd04193 170 VKVADPVFIGFCISKGADVGAKVVRKRYP-TEKVGVVVLVDGKPQVVEYSEISDELAEKR-D-ADGEL---------QYN 237 (323)
T ss_pred ccccCHHHhHHHHHcCCceEEEEEECCCC-CCceeEEEEECCeEEEEEeecCCHHHHhcc-C-cCCcE---------ecc
Confidence 44333557888889999998877665432 223343 44444345667776554321100 0 00111 013
Q ss_pred eeeeeEEEEehHHHHHHHHh
Q 015713 304 IASMGVYLFRTDVLLNLLRS 323 (402)
Q Consensus 304 ~~~~Giyvf~~~~l~~ll~~ 323 (402)
..++.+.+|+-+.|.++++.
T Consensus 238 ~~ni~~~~fsl~fl~~~~~~ 257 (323)
T cd04193 238 AGNIANHFFSLDFLEKAAEM 257 (323)
T ss_pred cchHhhheeCHHHHHHHHhh
Confidence 44567888999998887653
No 93
>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=99.11 E-value=2.4e-09 Score=98.47 Aligned_cols=222 Identities=19% Similarity=0.231 Sum_probs=144.9
Q ss_pred CCCeeEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCC-CCeEEEEccCCchhHHHHHHhhccCCCCcc
Q 015713 90 PKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSG-FNKIFIMTQFNSFSLNRHLARSYNLGNGVN 168 (402)
Q Consensus 90 ~~~m~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~G-I~~IiVv~~~~~~~i~~~l~~~y~~~~g~~ 168 (402)
|++..|||+|.|..+|. ..|-+.+++|+ |||.|+|+.+.+++ +++|+|-+ +++.|.+.- ..|
T Consensus 1 ~~~~iAiIpAR~gSKgI------~~KNi~~~~gk-pLi~~~I~aA~ns~~fd~VviSs--Ds~~Il~~A-~~y------- 63 (228)
T COG1083 1 MMKNIAIIPARGGSKGI------KNKNIRKFGGK-PLIGYTIEAALNSKLFDKVVISS--DSEEILEEA-KKY------- 63 (228)
T ss_pred CcceEEEEeccCCCCcC------CccchHHhCCc-chHHHHHHHHhcCCccceEEEcC--CcHHHHHHH-HHh-------
Confidence 45678999999999999 67999999999 99999999999998 68887776 455554432 233
Q ss_pred cCCCcEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCc--cCCccHHHHHHHHHhCCCcEEEE
Q 015713 169 FGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH--LYRMDYTEFLQKHIDTKADITVS 246 (402)
Q Consensus 169 ~~~~~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~--l~~~di~~~l~~h~~~~aditi~ 246 (402)
|.. +.++.+.....+ ...|.+++..++..+.. ..+.++.+.+-. +...++.+.++.+..++.+..++
T Consensus 64 -gak-~~~~Rp~~LA~D-----~ast~~~~lh~le~~~~----~~~~~~lLq~TsPLl~~~~ik~A~e~f~~~~~~sl~s 132 (228)
T COG1083 64 -GAK-VFLKRPKELASD-----RASTIDAALHALESFNI----DEDTLILLQPTSPLLTSLHIKEAFEKFLNNQYDSLFS 132 (228)
T ss_pred -Ccc-ccccCChhhccC-----chhHHHHHHHHHHHhcc----ccCeeEEeccCccccchhHHHHHHHHHhcCCCcceEE
Confidence 322 223332221110 11344566666666642 334477888777 44567999999999988888888
Q ss_pred EEEcCCCCCCcceEEEECCCCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEehHHHHHHHHhhCC
Q 015713 247 CVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYP 326 (402)
Q Consensus 247 ~~~~~~~~~~~~g~v~iD~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~~~~l~~ll~~~~~ 326 (402)
+.+... .-|-... +.+|.|..+.|.+.... +.|-....|..+..+|+++.+.|.+-
T Consensus 133 a~e~e~---~p~k~f~-~~~~~~~~~~~~~~~~~--------------rrQ~Lpk~Y~~NgaiYi~~~~~l~e~------ 188 (228)
T COG1083 133 AVECEH---HPYKAFS-LNNGEVKPVNEDPDFET--------------RRQDLPKAYRENGAIYINKKDALLEN------ 188 (228)
T ss_pred Eeeccc---chHHHHH-hcCCceeecccCCcccc--------------ccccchhhhhhcCcEEEehHHHHhhc------
Confidence 887753 2221111 23477877777663221 11111124777889999999987531
Q ss_pred CCCchhhccHHhhhcCCcEEEEEEcC-eEEecCCHHHHHHHHhHhhccc
Q 015713 327 LSNDFGSEIIPASVKDHNVQAFLFND-YWEDIGTIKSFFMPIWPSQNSL 374 (402)
Q Consensus 327 ~~~d~~~~ii~~li~~~~v~a~~~~g-~w~DIgtp~d~~~A~~~ll~~~ 374 (402)
..-| ..+...|.++. ..+||++..||..|+..+..++
T Consensus 189 -~~~f----------~~~~~~y~m~~~~~~DID~~~Dl~iae~l~~~~~ 226 (228)
T COG1083 189 -DCFF----------IPNTILYEMPEDESIDIDTELDLEIAENLIFLKE 226 (228)
T ss_pred -Ccee----------cCCceEEEcCcccccccccHHhHHHHHHHhhhhh
Confidence 1111 12444565544 4899999999999999876543
No 94
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=99.10 E-value=1.3e-08 Score=98.64 Aligned_cols=215 Identities=15% Similarity=0.196 Sum_probs=131.4
Q ss_pred eeEEEEcCCCCCcCCCCCCCCCccceecC---CcchHHHHHHHHhHh--------CCCCeEEEEccCCchhHHHHHHhhc
Q 015713 93 VAAIILGGGAGTRLFPLTNRRAKPAVPIG---GNYRLIDIPMSNCIN--------SGFNKIFIMTQFNSFSLNRHLARSY 161 (402)
Q Consensus 93 m~AIILAaG~GtRL~PlT~~~PKpLvpIg---G~~pLId~~i~~l~~--------~GI~~IiVv~~~~~~~i~~~l~~~y 161 (402)
+.+||||||.|||| +...||+|+||+ |+ |+|++.++.+.. .+|..+++...+..+.+.+++.+..
T Consensus 1 va~viLaGG~GtRL---g~~~PK~~~~i~~~~gk-~~l~~~~~~i~~~~~~~~~~~~Ip~~imts~~t~~~t~~~l~~~~ 76 (266)
T cd04180 1 VAVVLLAGGLGTRL---GKDGPKSSTDVGLPSGQ-CFLQLIGEKILTLQEIDLYSCKIPEQLMNSKYTHEKTQCYFEKIN 76 (266)
T ss_pred CEEEEECCCCcccc---CCCCCceeeeecCCCCC-cHHHHHHHHHHHHHHHhhcCCCCCEEEEcCchhHHHHHHHHHHcC
Confidence 36899999999999 578999999999 98 999999999976 3578888888889999999997532
Q ss_pred cCCCCc--ccCCCcEEEEecccC--CCcCC-ccc-cCChHHHHHHHH--HHHHhhhcCCCceEEEEcCCcc-CCccHHHH
Q 015713 162 NLGNGV--NFGDGFVEVLAATQT--PGEAG-KKW-FQGTADAVRQFI--WVFEDAKNKNVENVLILSGDHL-YRMDYTEF 232 (402)
Q Consensus 162 ~~~~g~--~~~~~~V~vl~~~q~--~~~~g-~~~-~~Gta~Al~~~~--~~l~~~~~~~~e~~Lvl~gD~l-~~~di~~~ 232 (402)
+..+. .|..+.+..+..... ..+.+ ..| +-|.++-+.... ..++.++..+.+.+.|.+.|.+ ....=..+
T Consensus 77 -~~~~~v~~f~Q~~~P~~~~~~~~~~~~~~~~~~~P~GnGdi~~~L~~sglLd~l~~~G~~yi~v~~vDN~la~v~DP~~ 155 (266)
T cd04180 77 -QKNSYVITFMQGKLPLKNDDDARDPHNKTKCHLFPCGHGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNLLVKVADPLF 155 (266)
T ss_pred -CCCCceEEEEeCCceEEeCCCCcccCCCCceeeccCCcHHHHHHHHHCChHHHHHHcCCEEEEEEccCccCccccCHHH
Confidence 21110 011111112211100 00011 122 357777665332 2455555568899999999994 44522346
Q ss_pred HHHHHhCCCcEEEEEEEcCCCCCCcceEEEECCCCc--EEEEEecCCCCCCC---Cccc-ccccccCCCCCCCCCCceee
Q 015713 233 LQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQ--IIQFAEKPKGPDLK---GMQC-DTTLLGLSMPDAVKFPYIAS 306 (402)
Q Consensus 233 l~~h~~~~aditi~~~~~~~~~~~~~g~v~iD~~g~--V~~~~EKp~~~~~~---~~~v-~~~~~~~~~~~a~~~~~~~~ 306 (402)
+-.+...++++.+-+.+-... ...-|++...++|+ ++++.|-|...... ...+ +++.+ .....+
T Consensus 156 lG~~~~~~~~~~~kvv~K~~~-d~k~G~~~~~~~g~~~~vEyse~~~~~~~~~~~~~~~~~~~~~---------~~~~~n 225 (266)
T cd04180 156 IGIAIQNRKAINQKVVPKTRN-EESGGYRIANINGRVQLLEYDQIKKLLKQKMVNNQIPKDIDDA---------PFFLFN 225 (266)
T ss_pred HHHHHHcCCCEEEEEEECCCC-CCeEEEEEEecCCCEEEEEeccCCHHHHhccccccCcCCCCce---------eeccce
Confidence 777778888887766654431 23346554422354 66676654321100 0000 01111 235678
Q ss_pred eeEEEEehHHHHHHHH
Q 015713 307 MGVYLFRTDVLLNLLR 322 (402)
Q Consensus 307 ~Giyvf~~~~l~~ll~ 322 (402)
+..++|+-+.+.++++
T Consensus 226 ~~~~~~~l~~l~~~~~ 241 (266)
T cd04180 226 TNNLINFLVEFKDRVD 241 (266)
T ss_pred EEEEEEEHHHHHHHHH
Confidence 9999999999987764
No 95
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=99.09 E-value=4.3e-09 Score=105.41 Aligned_cols=109 Identities=12% Similarity=0.135 Sum_probs=77.5
Q ss_pred CeeEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCCCCeEEEEccCCchhHHHHHHhhccCCCCcccCC
Q 015713 92 NVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGD 171 (402)
Q Consensus 92 ~m~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~GI~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~~ 171 (402)
.+.+||||||.|+||+ .+|.|+|++|+ ||++|+++.+... +++|+|+++... .. .+ . .
T Consensus 160 ~i~~IILAGGkSsRMG-----~dKaLL~~~Gk-pLl~~~ie~l~~~-~~~ViVv~~~~~---~~----~~--~------~ 217 (346)
T PRK14500 160 PLYGLVLTGGKSRRMG-----KDKALLNYQGQ-PHAQYLYDLLAKY-CEQVFLSARPSQ---WQ----GT--P------L 217 (346)
T ss_pred CceEEEEeccccccCC-----CCcccceeCCc-cHHHHHHHHHHhh-CCEEEEEeCchH---hh----hc--c------c
Confidence 6789999999999994 59999999999 9999999888664 899988886421 10 11 0 0
Q ss_pred CcEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCc-cCCcc-HHHHHHHH
Q 015713 172 GFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-LYRMD-YTEFLQKH 236 (402)
Q Consensus 172 ~~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~-l~~~d-i~~~l~~h 236 (402)
..+.++..... ..|...+|+.++...+ .+.++|+.||+ +...+ +..+++.+
T Consensus 218 ~~v~~I~D~~~--------~~GPlagI~aaL~~~~------~~~~lVl~cDmP~l~~~~l~~L~~~~ 270 (346)
T PRK14500 218 ENLPTLPDRGE--------SVGPISGILTALQSYP------GVNWLVVACDLAYLNSETVEKLLAHY 270 (346)
T ss_pred cCCeEEeCCCC--------CCChHHHHHHHHHhCC------CCCEEEEECCcCCCCHHHHHHHHHhh
Confidence 01334332221 2599999999987642 35789999999 45555 55666654
No 96
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=98.93 E-value=6.1e-08 Score=100.70 Aligned_cols=215 Identities=20% Similarity=0.219 Sum_probs=128.0
Q ss_pred CeeEEEEcCCCCCcCCCCCCCCCccceecC---CcchHHHHHHHHhHhC--------------CCCeEEEEccCCchhHH
Q 015713 92 NVAAIILGGGAGTRLFPLTNRRAKPAVPIG---GNYRLIDIPMSNCINS--------------GFNKIFIMTQFNSFSLN 154 (402)
Q Consensus 92 ~m~AIILAaG~GtRL~PlT~~~PKpLvpIg---G~~pLId~~i~~l~~~--------------GI~~IiVv~~~~~~~i~ 154 (402)
+|.+||||||.||||+ ...||+|+||+ |+ +|+++.++.+... .|.-+++...++.+.+.
T Consensus 106 kvavViLAGG~GTRLg---~~~PK~ll~I~~~~gk-sL~q~~~erI~~l~~~~~~~~~~~~~~~Ip~~IMTS~~t~~~t~ 181 (482)
T PTZ00339 106 EVAVLILAGGLGTRLG---SDKPKGLLECTPVKKK-TLFQFHCEKVRRLEEMAVAVSGGGDDPTIYILVLTSSFNHDQTR 181 (482)
T ss_pred CeEEEEECCCCcCcCC---CCCCCeEeeecCCCCc-cHHHHHHHHHHHHhhhhhcccccccCCCCCEEEEeCcchHHHHH
Confidence 5899999999999994 68999999995 77 9999999999874 24555555668889999
Q ss_pred HHHHhhccCCCC---cc-cCCCcEEEEecc-cCC--CcCC-ccc-cCChHHHHHHHHH--HHHhhhcCCCceEEEEcCCc
Q 015713 155 RHLARSYNLGNG---VN-FGDGFVEVLAAT-QTP--GEAG-KKW-FQGTADAVRQFIW--VFEDAKNKNVENVLILSGDH 223 (402)
Q Consensus 155 ~~l~~~y~~~~g---~~-~~~~~V~vl~~~-q~~--~~~g-~~~-~~Gta~Al~~~~~--~l~~~~~~~~e~~Lvl~gD~ 223 (402)
+++.+...|+-. +. |..+.+..+... ... .+.+ ..| +-|.++-...... .++++...+.+++.|.+.|.
T Consensus 182 ~~f~~~~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vDN 261 (482)
T PTZ00339 182 QFLEENNFFGLDKEQVIFFKQSSLPCYDENTGRFIMSSQGSLCTAPGGNGDVFKALAKCSELMDIVRKGIKYVQVISIDN 261 (482)
T ss_pred HHHHhccccCCCcccEEEEecCCcceEecCCCCcccCCCCceeeCCCCCcHHHHHHHHCCcHHHHHHcCCEEEEEEecCc
Confidence 998743213211 00 111112222110 000 0001 112 3477665543321 35555567889999999999
Q ss_pred c-CCccHHHHHHHHHhCCC-cEEEEEEEcCCCCCCcceEEE-ECCCCcEEEEEecCCCCCCCCcccccccccCCCCCCCC
Q 015713 224 L-YRMDYTEFLQKHIDTKA-DITVSCVPMDDCRASDYGLMK-IDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVK 300 (402)
Q Consensus 224 l-~~~di~~~l~~h~~~~a-diti~~~~~~~~~~~~~g~v~-iD~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~ 300 (402)
+ ...--..++-.+.+.++ ++.-.+.+... ...-|++. .|..-.|+++.|-+....... .-+++.+-
T Consensus 262 ~L~k~~DP~flG~~~~~~~~~~~~kvvk~~~--~EkvG~~~~~~g~~~vvEYsEi~~~~~~~~-~~~~g~l~-------- 330 (482)
T PTZ00339 262 ILAKVLDPEFIGLASSFPAHDVLNKCVKRED--DESVGVFCLKDYEWQVVEYTEINERILNND-ELLTGELA-------- 330 (482)
T ss_pred ccccccCHHHhHHHHHCCchhheeeeecCCC--CCceeEEEEeCCcccEEEEeccChhhhhcc-cccCCeec--------
Confidence 6 44433557777778777 66544444322 23446553 343336788887654321100 00111221
Q ss_pred CCceeeeeEEEEehHHHHHHHH
Q 015713 301 FPYIASMGVYLFRTDVLLNLLR 322 (402)
Q Consensus 301 ~~~~~~~Giyvf~~~~l~~ll~ 322 (402)
-...+++.++|+-++|.++.+
T Consensus 331 -f~~gnI~~h~fsl~fl~~~~~ 351 (482)
T PTZ00339 331 -FNYGNICSHIFSLDFLKKVAA 351 (482)
T ss_pred -ccccceEEEEEEHHHHHHHhh
Confidence 145688999999999987653
No 97
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=98.39 E-value=3.3e-05 Score=75.95 Aligned_cols=215 Identities=15% Similarity=0.237 Sum_probs=125.9
Q ss_pred CCeeEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHh----CCCC-eEEEEccC-CchhHHHHHHhhccCC
Q 015713 91 KNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCIN----SGFN-KIFIMTQF-NSFSLNRHLARSYNLG 164 (402)
Q Consensus 91 ~~m~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~----~GI~-~IiVv~~~-~~~~i~~~l~~~y~~~ 164 (402)
+++.+|+||||.|||| ....||.|+||....+++++.++++.. .|.+ .++|.|.+ .++...+++.+ |+..
T Consensus 2 ~kvavl~LaGG~GTRL---G~~~pKg~~~v~~~~s~l~l~~~~i~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~~-~~~~ 77 (300)
T cd00897 2 NKLVVLKLNGGLGTSM---GCTGPKSLIEVRDGKTFLDLTVQQIEHLNKTYGVDVPLVLMNSFNTDEDTKKILKK-YAGV 77 (300)
T ss_pred CcEEEEEecCCccccc---CCCCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCcchHHHHHHHHH-cCCC
Confidence 4678999999999999 567899999996555999999998865 2322 45666665 56778888864 3221
Q ss_pred CC-cc-cCCCcEEEEec-ccCC----CcCC-ccc-cCChHHHHHHHH--HHHHhhhcCCCceEEEEcCCccCCccHHHHH
Q 015713 165 NG-VN-FGDGFVEVLAA-TQTP----GEAG-KKW-FQGTADAVRQFI--WVFEDAKNKNVENVLILSGDHLYRMDYTEFL 233 (402)
Q Consensus 165 ~g-~~-~~~~~V~vl~~-~q~~----~~~g-~~~-~~Gta~Al~~~~--~~l~~~~~~~~e~~Lvl~gD~l~~~di~~~l 233 (402)
.. +. |..+.+.-+.. ...+ .+.+ ..| +-|.++-..... -.+++....+.+++.+.+.|.+...-=..++
T Consensus 78 ~~~v~~F~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nvDNL~a~~Dp~~l 157 (300)
T cd00897 78 NVDIHTFNQSRYPRISKETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNIDNLGATVDLRIL 157 (300)
T ss_pred ccCeEEEecCCcccCccccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEecccccccCCHHHH
Confidence 10 00 11111110100 0000 0011 122 235555433221 1344444567899999999997653224588
Q ss_pred HHHHhCCCcEEEEEEEcCCCCCCcceEE-EECCCCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEE
Q 015713 234 QKHIDTKADITVSCVPMDDCRASDYGLM-KIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLF 312 (402)
Q Consensus 234 ~~h~~~~aditi~~~~~~~~~~~~~g~v-~iD~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf 312 (402)
..|.++++++++=+.+-..+ ...-|.+ ..|..-+|+++.|-|........ + ...-...+++.+.|
T Consensus 158 g~~~~~~~~~~~evv~Kt~~-dek~G~l~~~~g~~~vvEyse~p~e~~~~~~--~-----------~~~~~~~nt~n~~~ 223 (300)
T cd00897 158 NHMVDNKAEYIMEVTDKTRA-DVKGGTLIQYEGKLRLLEIAQVPKEHVDEFK--S-----------IKKFKIFNTNNLWV 223 (300)
T ss_pred HHHHhcCCceEEEEeecCCC-CCcccEEEEECCEEEEEEeccCCHHHHHhhc--C-----------cccceEEEEeEEEE
Confidence 88899999998766654332 2233443 34433457777776653211000 0 00124678999999
Q ss_pred ehHHHHHHHHh
Q 015713 313 RTDVLLNLLRS 323 (402)
Q Consensus 313 ~~~~l~~ll~~ 323 (402)
+-+.|.++++.
T Consensus 224 ~l~~L~~~~~~ 234 (300)
T cd00897 224 NLKAVKRVVEE 234 (300)
T ss_pred EHHHHHHHHHh
Confidence 99998887643
No 98
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=98.27 E-value=2.6e-05 Score=80.23 Aligned_cols=262 Identities=21% Similarity=0.313 Sum_probs=142.2
Q ss_pred CCCeeEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHh----CCCC-eEEEEcc-CCchhHHHHHHhhccC
Q 015713 90 PKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCIN----SGFN-KIFIMTQ-FNSFSLNRHLARSYNL 163 (402)
Q Consensus 90 ~~~m~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~----~GI~-~IiVv~~-~~~~~i~~~l~~~y~~ 163 (402)
-.++..|+||||.|||| ....||.++||.....+++..++++.. .|.+ -++|.+. ...+...+++.+ | +
T Consensus 54 ~~kvavl~LaGGlGTrl---G~~~pK~~~~v~~~~t~ldl~~~qi~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~k-y-f 128 (420)
T PF01704_consen 54 LGKVAVLKLAGGLGTRL---GCSGPKGLIPVREGKTFLDLIVEQIEALNKKYGVDIPLYIMTSFNTHEDTRKFLEK-Y-F 128 (420)
T ss_dssp TTCEEEEEEEESBSGCC---TESSBGGGSEEETTEEHHHHHHHHHHHHHHHHTTT-EEEEEEETTTHHHHHHHHHH-G-C
T ss_pred hCCEEEEEEcCcccCcc---CCCCCCcceecCCcccHHHHHHHHHHHHhccccccceEEEecCcccHHHHHHHHHH-h-c
Confidence 45788999999999999 467899999996655889988888765 2332 4566665 467888888877 5 3
Q ss_pred CCCcc---cCCCcEEEEecccC-CCcC-C------ccc-cCChHHHHHHHH--HHHHhhhcCCCceEEEEcCCccCCccH
Q 015713 164 GNGVN---FGDGFVEVLAATQT-PGEA-G------KKW-FQGTADAVRQFI--WVFEDAKNKNVENVLILSGDHLYRMDY 229 (402)
Q Consensus 164 ~~g~~---~~~~~V~vl~~~q~-~~~~-g------~~~-~~Gta~Al~~~~--~~l~~~~~~~~e~~Lvl~gD~l~~~di 229 (402)
+-... |..+.+..+..+.. +-+. + ..| +-|.++-..... ..+++....+.+++.|.+.|.|...-=
T Consensus 129 g~~~~v~~F~Q~~~P~i~~d~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDNL~a~~D 208 (420)
T PF01704_consen 129 GLDVDVFFFKQSKLPAIDADGKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDNLGAVVD 208 (420)
T ss_dssp GSSCCEEEEEE-EEEEEETTTTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTBTT-TT-
T ss_pred CCCcceEEEeecCcceEeCCCccccccccccccchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCCcccccC
Confidence 32211 11122222221110 0000 0 123 346666443222 245555556789999999999776433
Q ss_pred HHHHHHHHhCCCcEEEEEEEcCCCCCCcceEE-EECCCCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeee
Q 015713 230 TEFLQKHIDTKADITVSCVPMDDCRASDYGLM-KIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMG 308 (402)
Q Consensus 230 ~~~l~~h~~~~aditi~~~~~~~~~~~~~g~v-~iD~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~G 308 (402)
..++..+.+.++++.+-|.+-... ...-|.+ ..|..-+|+++.+-|...... .. .+ ......++|
T Consensus 209 p~~lG~~~~~~~~~~~evv~Kt~~-dek~Gvl~~~~G~~~vvEysqip~~~~~~-~~-----------~~-~~~~~Fntn 274 (420)
T PF01704_consen 209 PVFLGYMIEKNADFGMEVVPKTSP-DEKGGVLCRYDGKLQVVEYSQIPKEHMAE-FK-----------DI-KGFLLFNTN 274 (420)
T ss_dssp HHHHHHHHHTT-SEEEEEEE-CST-TTSSEEEEEETTEEEEEEGGGS-HHGHHH-HT-----------ST-TTSBEEEEE
T ss_pred HHHHHHHHhccchhheeeeecCCC-CCceeEEEEeCCccEEEEeccCCHHHHHh-hh-----------cc-ccceEEEec
Confidence 458888889999998888775332 2333444 343223455555544321000 00 00 112456788
Q ss_pred EEEEehHHHHHHHHhhCCC--------C-----C-----chhhccHHhhhcC-CcEEEEEE-cCeEEecCCHHHHHHHHh
Q 015713 309 VYLFRTDVLLNLLRSSYPL--------S-----N-----DFGSEIIPASVKD-HNVQAFLF-NDYWEDIGTIKSFFMPIW 368 (402)
Q Consensus 309 iyvf~~~~l~~ll~~~~~~--------~-----~-----d~~~~ii~~li~~-~~v~a~~~-~g~w~DIgtp~d~~~A~~ 368 (402)
-..|+-+.|.++++..... . + .+ +..+-..+.. .+..++.. ...|..|.+..|++..+-
T Consensus 275 Ni~~~l~~l~~~~~~~~~~Lp~h~a~Kki~~~d~~~~~~q~-Et~i~~~i~~f~~~~~v~V~R~rF~PvKn~~dLl~~~S 353 (420)
T PF01704_consen 275 NIWFSLDFLKRLLERDELQLPIHVAKKKIPYVDNGIKVIQF-ETAIGFAIFQFDNSFAVEVPRDRFAPVKNTSDLLLVRS 353 (420)
T ss_dssp EEEEEHHHHHHHHHTTTCCS-EEEEEEESSEECTEEEEEEE-ECGGGGGGGGCTSEEEEEE-GGG--B-SSHHHHHHHHS
T ss_pred eeeEEHHHHHHHHHhccccCccEEcchhcccccCCccEEee-hhhhhchHhhccCcEEEEEcHHHcCCccccCcceeecc
Confidence 8899999998887642210 0 0 01 1111112221 23333333 467999999999888776
Q ss_pred Hhh
Q 015713 369 PSQ 371 (402)
Q Consensus 369 ~ll 371 (402)
.+-
T Consensus 354 d~y 356 (420)
T PF01704_consen 354 DLY 356 (420)
T ss_dssp TTE
T ss_pred cee
Confidence 443
No 99
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase
Probab=98.25 E-value=5.3e-05 Score=78.95 Aligned_cols=212 Identities=19% Similarity=0.256 Sum_probs=125.4
Q ss_pred CCeeEEEEcCCCCCcCCCCCCCCCccceecC---CcchHHHHHHHHhHhC--------------CCC-eEEEEcc-CCch
Q 015713 91 KNVAAIILGGGAGTRLFPLTNRRAKPAVPIG---GNYRLIDIPMSNCINS--------------GFN-KIFIMTQ-FNSF 151 (402)
Q Consensus 91 ~~m~AIILAaG~GtRL~PlT~~~PKpLvpIg---G~~pLId~~i~~l~~~--------------GI~-~IiVv~~-~~~~ 151 (402)
.++.+|+||||.|||| ....||.|++|+ |+ .+++..++.+... ++. .++|.|. .+.+
T Consensus 115 gkvavvlLAGGqGTRL---G~~~PKg~~~Iglps~k-slfql~~e~I~~lq~la~~~~~~~~~~~~~IPl~IMTS~~T~~ 190 (493)
T PLN02435 115 GKLAVVLLSGGQGTRL---GSSDPKGCFNIGLPSGK-SLFQLQAERILCVQRLAAQASSEGPGRPVTIHWYIMTSPFTDE 190 (493)
T ss_pred CCEEEEEeCCCccccc---CCCCCccceecCCCCCC-cHHHHHHHHHHHHHHHHHhhcccccCCCCceeEEEeCCcchhH
Confidence 5688999999999999 567899999886 66 8999988876431 111 3466776 4567
Q ss_pred hHHHHHHhhccCCCCcccCCCcEEEEecccCC-----C-----cCC-cc-ccCChHHHHHHHHH--HHHhhhcCCCceEE
Q 015713 152 SLNRHLARSYNLGNGVNFGDGFVEVLAATQTP-----G-----EAG-KK-WFQGTADAVRQFIW--VFEDAKNKNVENVL 217 (402)
Q Consensus 152 ~i~~~l~~~y~~~~g~~~~~~~V~vl~~~q~~-----~-----~~g-~~-~~~Gta~Al~~~~~--~l~~~~~~~~e~~L 217 (402)
...++|.+.-.||- ....|.+.....-+ + +.+ .. .+-|.++-...... .+++....+.+.+.
T Consensus 191 ~T~~ff~~~~~FGl----~~~~V~fF~Q~~~P~~~~dg~i~l~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~ 266 (493)
T PLN02435 191 ATRKFFESHKYFGL----EADQVTFFQQGTLPCVSKDGKFIMETPFKVAKAPDGNGGVYAALKSSRLLEDMASRGIKYVD 266 (493)
T ss_pred HHHHHHHhCCCCCC----CccceEEEecCCcceECCCCCcccCCCcccccCCCCCcHHHHHHHHCCcHHHHHhcCCEEEE
Confidence 78888864211331 11123322211100 0 000 11 23466665543322 45555567889999
Q ss_pred EEcCCcc-CCccHHHHHHHHHhCCCcEEEEEEEcCCCCCCcceEEEE-CCCCc--EEEEEecCCCCCCCCcccccccccC
Q 015713 218 ILSGDHL-YRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKI-DRSGQ--IIQFAEKPKGPDLKGMQCDTTLLGL 293 (402)
Q Consensus 218 vl~gD~l-~~~di~~~l~~h~~~~aditi~~~~~~~~~~~~~g~v~i-D~~g~--V~~~~EKp~~~~~~~~~v~~~~~~~ 293 (402)
+.+.|.+ ...--..++-.+...++++.+-+.+-... ...-|++.. +.+|+ |+++.|-+....... .-+++.|.
T Consensus 267 v~~vDN~L~~~~DP~flG~~~~~~~d~~~kVv~K~~~-~EkvG~i~~~~~~g~~~vvEYsEl~~~~~~~~-~~~~g~L~- 343 (493)
T PLN02435 267 CYGVDNALVRVADPTFLGYFIDKGVASAAKVVRKAYP-QEKVGVFVRRGKGGPLTVVEYSELDQAMASAI-NQQTGRLR- 343 (493)
T ss_pred EEecccccccccCHHHHHHHHhcCCceEEEeeecCCC-CCceeEEEEecCCCCEEEEEeccCCHHHHhcc-Cccccccc-
Confidence 9999994 44444567888888999987766543221 233465533 34554 666666543211000 00122222
Q ss_pred CCCCCCCCCceeeeeEEEEehHHHHHHH
Q 015713 294 SMPDAVKFPYIASMGVYLFRTDVLLNLL 321 (402)
Q Consensus 294 ~~~~a~~~~~~~~~Giyvf~~~~l~~ll 321 (402)
-+..+++.++|+-++|.++.
T Consensus 344 --------~~~gnI~~h~fs~~fL~~~~ 363 (493)
T PLN02435 344 --------YCWSNVCLHMFTLDFLNQVA 363 (493)
T ss_pred --------cchhhHHHhhccHHHHHHHH
Confidence 24678899999999998874
No 100
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=98.19 E-value=9.6e-05 Score=76.63 Aligned_cols=267 Identities=14% Similarity=0.200 Sum_probs=150.2
Q ss_pred CCCeeEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHh----CCCC-eEEEEccC-CchhHHHHHHhhccC
Q 015713 90 PKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCIN----SGFN-KIFIMTQF-NSFSLNRHLARSYNL 163 (402)
Q Consensus 90 ~~~m~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~----~GI~-~IiVv~~~-~~~~i~~~l~~~y~~ 163 (402)
..++.+|.||||.|||| ....||.++|+.....++|..++++.. .|.+ -.+|.+.+ .++...++|.+ |+.
T Consensus 77 L~k~avlkLnGGlGTrm---G~~~PKs~i~v~~~~sfldl~~~qi~~l~~~~g~~vPl~iMtS~~T~~~T~~~l~k-~~~ 152 (469)
T PLN02474 77 LDKLVVLKLNGGLGTTM---GCTGPKSVIEVRNGLTFLDLIVIQIENLNKKYGCNVPLLLMNSFNTHDDTQKIVEK-YTN 152 (469)
T ss_pred HhcEEEEEecCCccccc---CCCCCceeEEcCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCchhHHHHHHHHH-cCC
Confidence 46789999999999999 457899999995444899998888755 3433 34677775 45667777764 422
Q ss_pred -CCCcc-cCCCcEEEEe-cccCCCc-C----Ccccc-CChHHHHHHHHH--HHHhhhcCCCceEEEEcCCccCCccHHHH
Q 015713 164 -GNGVN-FGDGFVEVLA-ATQTPGE-A----GKKWF-QGTADAVRQFIW--VFEDAKNKNVENVLILSGDHLYRMDYTEF 232 (402)
Q Consensus 164 -~~g~~-~~~~~V~vl~-~~q~~~~-~----g~~~~-~Gta~Al~~~~~--~l~~~~~~~~e~~Lvl~gD~l~~~di~~~ 232 (402)
...+. |..+.+.-+. ....+-+ . ...|+ -|.++-...... .+++....+.+++.|.+.|.+...-=..+
T Consensus 153 ~~~~i~~F~Q~~~P~l~~~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDNLga~vDp~~ 232 (469)
T PLN02474 153 SNIEIHTFNQSQYPRVVADDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDNLGAIVDLKI 232 (469)
T ss_pred CccceEEEecCceeeEecCCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCccccccCHHH
Confidence 11110 1111111111 1100000 0 11243 466555443221 24444446789999999999764322457
Q ss_pred HHHHHhCCCcEEEEEEEcCCCCCCcceEE-EECCCCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEE
Q 015713 233 LQKHIDTKADITVSCVPMDDCRASDYGLM-KIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYL 311 (402)
Q Consensus 233 l~~h~~~~aditi~~~~~~~~~~~~~g~v-~iD~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyv 311 (402)
+.+|..+++++++=+.+-... ...-|.+ ..|..-+|+++.+-|....... + +.+ .-...+++.+.
T Consensus 233 lg~~~~~~~e~~~ev~~Kt~~-d~kgG~l~~~dgk~~lvEysqvp~e~~~~f---~-~~~---------kf~~fNtnn~w 298 (469)
T PLN02474 233 LNHLIQNKNEYCMEVTPKTLA-DVKGGTLISYEGKVQLLEIAQVPDEHVNEF---K-SIE---------KFKIFNTNNLW 298 (469)
T ss_pred HHHHHhcCCceEEEEeecCCC-CCCccEEEEECCEEEEEEEecCCHHHHHhh---c-ccc---------cceeeeeeeEE
Confidence 888899999998877654321 1223443 3443345778887665321100 0 011 12568899999
Q ss_pred EehHHHHHHHHhhC--------CCCCc---h--hhccHHhhhcC-CcEEEEEE-cCeEEecCCHHHHHHHHhHhhccc
Q 015713 312 FRTDVLLNLLRSSY--------PLSND---F--GSEIIPASVKD-HNVQAFLF-NDYWEDIGTIKSFFMPIWPSQNSL 374 (402)
Q Consensus 312 f~~~~l~~ll~~~~--------~~~~d---~--~~~ii~~li~~-~~v~a~~~-~g~w~DIgtp~d~~~A~~~ll~~~ 374 (402)
|+-+.+.++++... +...+ . .+.++-.++.- .+..++.. ...|..|.+..|++-++..+..-.
T Consensus 299 ~~L~~l~~~~~~~~l~~~~I~n~k~~~g~kv~q~Et~ig~ai~~f~~~~~v~VpR~rF~PVK~~~dll~~rsdly~l~ 376 (469)
T PLN02474 299 VNLKAIKRLVEADALKMEIIPNPKEVDGVKVLQLETAAGAAIRFFDNAIGINVPRSRFLPVKATSDLLLVQSDLYTLV 376 (469)
T ss_pred EEHHHHHHHhhcCCCCceeecCCCCCCCeeEEEeHHHHHHHHHhCCCceEEEEchhhccCCCCCCCHHHHHHHHHHhc
Confidence 99999988764321 00101 0 01111122221 23334433 235888999888888887665443
No 101
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=98.19 E-value=1.7e-05 Score=73.57 Aligned_cols=177 Identities=23% Similarity=0.318 Sum_probs=102.4
Q ss_pred eEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCC-CCeEEEEccCCchhHHHHHHhhccCCCCcccCCC
Q 015713 94 AAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSG-FNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDG 172 (402)
Q Consensus 94 ~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~G-I~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~~~ 172 (402)
.|||+|-|..+|| .-|.|.+++|+ |||+|+++.+.+++ +++|+|.|. ++.+.+.+ +.| |.
T Consensus 1 iaiIpAR~gS~rl------p~Knl~~l~gk-pLi~~~i~~a~~s~~~d~IvVaTd--~~~i~~~~-~~~--------g~- 61 (217)
T PF02348_consen 1 IAIIPARGGSKRL------PGKNLKPLGGK-PLIEYVIERAKQSKLIDEIVVATD--DEEIDDIA-EEY--------GA- 61 (217)
T ss_dssp EEEEEE-SSSSSS------TTGGGSEETTE-EHHHHHHHHHHHTTTTSEEEEEES--SHHHHHHH-HHT--------TS-
T ss_pred CEEEecCCCCCCC------CcchhhHhCCc-cHHHHHHHHHHhCCCCCeEEEeCC--CHHHHHHH-HHc--------CC-
Confidence 3899999999999 67999999999 99999999999975 799999994 55565554 343 21
Q ss_pred cEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCc-cCCc-cHHHHHHHHHhCCCc-EEEEEEE
Q 015713 173 FVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-LYRM-DYTEFLQKHIDTKAD-ITVSCVP 249 (402)
Q Consensus 173 ~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~-l~~~-di~~~l~~h~~~~ad-iti~~~~ 249 (402)
.|.+...... .++... ..+...+. ....+.++.+.||. +.+. .+.++++.+.+...+ +.-.+.+
T Consensus 62 ~v~~~~~~~~---------~~~~r~-~~~~~~~~---~~~~~~vv~~~~d~Pll~~~~i~~~i~~~~~~~~~~~~~~~~~ 128 (217)
T PF02348_consen 62 KVIFRRGSLA---------DDTDRF-IEAIKHFL---ADDEDIVVRLQGDSPLLDPTSIDRAIEDIREANEDYISNLVDP 128 (217)
T ss_dssp EEEE--TTSS---------SHHHHH-HHHHHHHT---CSTTSEEEEESTTETT--HHHHHHHHHHHHHSTTSSEEEEEEE
T ss_pred eeEEcChhhc---------CCcccH-HHHHHHhh---hhHHhhccccCCeeeECCHHHHHHHHHHHhcCchhhhcccccc
Confidence 2333322211 233322 23333332 11234789999999 4454 578899998888775 3222333
Q ss_pred cCC----CCCCcceEEEECCCCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeeeEEEEehH
Q 015713 250 MDD----CRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTD 315 (402)
Q Consensus 250 ~~~----~~~~~~g~v~iD~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~~~ 315 (402)
... ...... ....+.++....+.+.+.....+. .. + ....++...|+|.+...
T Consensus 129 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-------~~----~-~~~~~~~~~~~~~~~~~ 185 (217)
T PF02348_consen 129 VGSSVEIFNFNPL-KVLFDDDGLELYFSEHVIPYIRRN-------PE----E-FKYFYIRQVGIYAFRKE 185 (217)
T ss_dssp ECSHHHHTSTTST-EEEECTTSBEEEEESSESSECHHH-------HC----S-SSSTEEEEEEEEEEEHH
T ss_pred ccchhhcccccce-EEEeccccchhhcccCCCcccccc-------cc----c-ccccccccccccccccc
Confidence 221 112222 223445556666665544321100 00 0 00125677888888886
No 102
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=98.18 E-value=0.00025 Score=66.04 Aligned_cols=115 Identities=24% Similarity=0.440 Sum_probs=78.2
Q ss_pred eeEEEEcCCC-CCcCCCCCCCCCccceecCCcchHHHHHHHHhHhCC-CCeEEEEccCCch--hHHHHHHhhccCCCCcc
Q 015713 93 VAAIILGGGA-GTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSG-FNKIFIMTQFNSF--SLNRHLARSYNLGNGVN 168 (402)
Q Consensus 93 m~AIILAaG~-GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~G-I~~IiVv~~~~~~--~i~~~l~~~y~~~~g~~ 168 (402)
|.++|+.|-. .||| .-|.|+|+||. |||+++++++..+- +++|+|.|.-..+ .|..+. +.+
T Consensus 3 ~I~~IiQARmgStRL------pgKvLlpL~~~-pmI~~~lervrks~~~d~ivvATS~~~~d~~l~~~~-~~~------- 67 (241)
T COG1861 3 MILVIIQARMGSTRL------PGKVLLPLGGE-PMIEYQLERVRKSKDLDKIVVATSDKEEDDALEEVC-RSH------- 67 (241)
T ss_pred cEEEEeeecccCccC------CcchhhhcCCC-chHHHHHHHHhccccccceEEEecCCcchhHHHHHH-HHc-------
Confidence 3455555555 5788 57999999999 99999999999974 7999999986543 232222 221
Q ss_pred cCCCcEEEEecccCCCcCCccccCChHHHH-HHHHHHHHhhhcCCCceEEEEcCCc-cCCccH-HHHHHHHHhCCCcE
Q 015713 169 FGDGFVEVLAATQTPGEAGKKWFQGTADAV-RQFIWVFEDAKNKNVENVLILSGDH-LYRMDY-TEFLQKHIDTKADI 243 (402)
Q Consensus 169 ~~~~~V~vl~~~q~~~~~g~~~~~Gta~Al-~~~~~~l~~~~~~~~e~~Lvl~gD~-l~~~di-~~~l~~h~~~~adi 243 (402)
| +.|. +|..+-| ..+...++. ...+.++=+.||. +.+.++ ..+++.|.++|+|-
T Consensus 68 -G---~~vf--------------rGs~~dVL~Rf~~a~~a---~~~~~VVRvTGD~P~~dp~l~d~~v~~~l~~gaDY 124 (241)
T COG1861 68 -G---FYVF--------------RGSEEDVLQRFIIAIKA---YSADVVVRVTGDNPFLDPELVDAAVDRHLEKGADY 124 (241)
T ss_pred -C---eeEe--------------cCCHHHHHHHHHHHHHh---cCCCeEEEeeCCCCCCCHHHHHHHHHHHHhcCCcc
Confidence 2 3332 3554444 445444442 3456888899999 666665 67889999988764
No 103
>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=98.10 E-value=0.00015 Score=65.61 Aligned_cols=97 Identities=14% Similarity=0.205 Sum_probs=62.9
Q ss_pred CCccceecCC--cchHHHHHHHHhHhCCCCeEEEEccCCchhHHHHHHhhccCCCCcccCCCcEEEEecccCCCcCCccc
Q 015713 113 RAKPAVPIGG--NYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKW 190 (402)
Q Consensus 113 ~PKpLvpIgG--~~pLId~~i~~l~~~GI~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~~~~V~vl~~~q~~~~~g~~~ 190 (402)
.+|+|++++| + |||+|+++.+. ..+.+|+|+++.+. .+ . . ++ +.++.. ...
T Consensus 3 ~dK~ll~~~g~~~-~ll~~~~~~l~-~~~~~iivv~~~~~-~~----~-~--------~~---~~~i~d-~~~------- 55 (178)
T PRK00576 3 RDKATLPLPGGTT-TLVEHVVGIVG-QRCAPVFVMAAPGQ-PL----P-E--------LP---APVLRD-ELR------- 55 (178)
T ss_pred CCCEeeEeCCCCc-CHHHHHHHHHh-hcCCEEEEECCCCc-cc----c-c--------CC---CCEecc-CCC-------
Confidence 5899999999 9 99999999765 56899999997642 11 0 0 11 234432 211
Q ss_pred cCChHHHHHHHHHHHHhhhcCCCceEEEEcCCc-cCCcc-HHHHHHHHHhC
Q 015713 191 FQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-LYRMD-YTEFLQKHIDT 239 (402)
Q Consensus 191 ~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~-l~~~d-i~~~l~~h~~~ 239 (402)
.+|...++..++..... ...+.++|+.||+ +...+ +..+++.+...
T Consensus 56 g~gpl~~~~~gl~~~~~---~~~~~~lv~~~DmP~i~~~~i~~L~~~~~~~ 103 (178)
T PRK00576 56 GLGPLPATGRGLRAAAE---AGARLAFVCAVDMPYLTVELIDDLARPAAQT 103 (178)
T ss_pred CCCcHHHHHHHHHHHHh---cCCCEEEEEeCCCCCCCHHHHHHHHHHhhcC
Confidence 14677777666544321 1358999999999 55555 56666654433
No 104
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=98.08 E-value=0.00014 Score=71.88 Aligned_cols=216 Identities=14% Similarity=0.156 Sum_probs=124.8
Q ss_pred eEEEEcCCCCCcCCCCCCCCCccceecC---CcchHHHHHHHHhHhCC---------CCeEEEEccC-CchhHHHHHHhh
Q 015713 94 AAIILGGGAGTRLFPLTNRRAKPAVPIG---GNYRLIDIPMSNCINSG---------FNKIFIMTQF-NSFSLNRHLARS 160 (402)
Q Consensus 94 ~AIILAaG~GtRL~PlT~~~PKpLvpIg---G~~pLId~~i~~l~~~G---------I~~IiVv~~~-~~~~i~~~l~~~ 160 (402)
.+|+||||.|||| ...-||-++||+ |+ +++++.++++.... .-.++|.|.. +.+...+++.+.
T Consensus 2 a~vllaGG~GTRL---G~~~pKg~~~v~~~~~~-s~f~l~~~~i~~l~~~~~~~~~~~IPl~IMTS~~Th~~T~~~fe~n 77 (315)
T cd06424 2 VFVLVAGGLGERL---GYSGIKIGLPVELTTNT-TYLQYYLNYIRAFQEASKKGEKMEIPFVIMTSDDTHSKTLKLLEEN 77 (315)
T ss_pred EEEEecCCCcccc---CCCCCceeeeccCCCCC-cHHHHHHHHHHHHHHHhhccCCCceeEEEECCCchhHHHHHHHHHC
Confidence 5899999999999 567899999994 77 89999999886631 1245777774 567788888642
Q ss_pred ccCCCC---cc-cCCCcEEEEe-cccCC---Cc-CC-ccc-cCChHHHHHHHH--HHHHhhhcCCCceEEEEcCCc-cCC
Q 015713 161 YNLGNG---VN-FGDGFVEVLA-ATQTP---GE-AG-KKW-FQGTADAVRQFI--WVFEDAKNKNVENVLILSGDH-LYR 226 (402)
Q Consensus 161 y~~~~g---~~-~~~~~V~vl~-~~q~~---~~-~g-~~~-~~Gta~Al~~~~--~~l~~~~~~~~e~~Lvl~gD~-l~~ 226 (402)
-.||-. +. |..+.+..+. .+... .+ .. ..| +-|.++-..... ..+++....+.+.+.+..-|. |..
T Consensus 78 ~yFGl~~~~V~fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~GhGdiy~aL~~sGlLd~l~~~Gikyi~v~~vdN~L~~ 157 (315)
T cd06424 78 NYFGLEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDTNALAF 157 (315)
T ss_pred CccCCCcccEEEEecCceEEEecCCCCcccccCCCCccccCCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecchhhhh
Confidence 114311 00 1122222332 10000 00 00 111 346655543322 234444456789999999998 445
Q ss_pred ccHHHHHHHHHhCCCcEEEEEEEcCCCCCCcceEEE-EC-CCCc--E--EEEEecCCC---CCCCCcccccccccCCCCC
Q 015713 227 MDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMK-ID-RSGQ--I--IQFAEKPKG---PDLKGMQCDTTLLGLSMPD 297 (402)
Q Consensus 227 ~di~~~l~~h~~~~aditi~~~~~~~~~~~~~g~v~-iD-~~g~--V--~~~~EKp~~---~~~~~~~v~~~~~~~~~~~ 297 (402)
.-..-++-.+...++++...+.+... ...-|++. ++ .+|+ | +++.|-+.. ...++..++. ..|+|
T Consensus 158 ~adP~fiG~~~~~~~d~~~k~v~~~~--~E~vG~~~~~~~~~g~~~v~nvEYsel~~~~~~~~~~~g~~~~-~~~~s--- 231 (315)
T cd06424 158 KAIPAVLGVSATKSLDMNSLTVPRKP--KEAIGALCKLTKNNGKSMTINVEYNQLDPLLRASGKDDGDVDD-KTGFS--- 231 (315)
T ss_pred ccChhhEEEEecCCCceEeEEEeCCC--CCceeeEEEEecCCCceEEEEEEeecCCHHHHhcCCCCCCccc-ccccc---
Confidence 54556777778888888776665332 34456543 22 3343 3 666665421 1001111110 12232
Q ss_pred CCCCCceeeeeEEEEehHHHHHHHHh
Q 015713 298 AVKFPYIASMGVYLFRTDVLLNLLRS 323 (402)
Q Consensus 298 a~~~~~~~~~Giyvf~~~~l~~ll~~ 323 (402)
.+..++++++|+-+.+.+.++.
T Consensus 232 ----~f~gNi~~~~f~l~~~~~~l~~ 253 (315)
T cd06424 232 ----PFPGNINQLVFSLGPYMDELEK 253 (315)
T ss_pred ----cCCCeeeeEEEeHHHHHHHHhh
Confidence 3678999999999988887764
No 105
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=98.03 E-value=0.00028 Score=72.46 Aligned_cols=213 Identities=19% Similarity=0.312 Sum_probs=126.5
Q ss_pred CCCeeEEEEcCCCCCcCCCCCCCCCccceecC-CcchHHHHHHHHhHhC----CCC-eEEEEccCCchhHHHHHH-hhcc
Q 015713 90 PKNVAAIILGGGAGTRLFPLTNRRAKPAVPIG-GNYRLIDIPMSNCINS----GFN-KIFIMTQFNSFSLNRHLA-RSYN 162 (402)
Q Consensus 90 ~~~m~AIILAaG~GtRL~PlT~~~PKpLvpIg-G~~pLId~~i~~l~~~----GI~-~IiVv~~~~~~~i~~~l~-~~y~ 162 (402)
-.++.+|+||||.||||+ ..-||.+++|+ |+ ++++.+++....+ +++ ..+|.+..+.++-..++. ..|
T Consensus 103 ~~klAvl~LaGGqGtrlG---~~gPKgl~~V~~gk-s~~dl~~~qIk~ln~~~~~~vP~~iMtS~nt~~t~s~f~~~~Y- 177 (472)
T COG4284 103 LGKLAVLKLAGGQGTRLG---CDGPKGLFEVKDGK-SLFDLQAEQIKYLNRQYNVDVPLYIMTSLNTEETDSYFKSNDY- 177 (472)
T ss_pred cCceEEEEecCCcccccc---cCCCceeEEecCCC-cHHHHHHHHHHHHHHHhCCCCCEEEEecCCcHHHHHHHhhhhh-
Confidence 357899999999999994 56799999999 66 9999999887653 432 467777788855555554 455
Q ss_pred CCC-C--cc-cCCCcEE-EEecccCCC--cCC--cccc-CChHHHHHHHHH--HHHhhhcCCCceEEEEcCCccCC-ccH
Q 015713 163 LGN-G--VN-FGDGFVE-VLAATQTPG--EAG--KKWF-QGTADAVRQFIW--VFEDAKNKNVENVLILSGDHLYR-MDY 229 (402)
Q Consensus 163 ~~~-g--~~-~~~~~V~-vl~~~q~~~--~~g--~~~~-~Gta~Al~~~~~--~l~~~~~~~~e~~Lvl~gD~l~~-~di 229 (402)
++. . +. |....+. ++..+..+- ..+ ..|+ .|.++--..... .+++....+.+.+.|.+.|.+.- .|+
T Consensus 178 ~~~~k~~I~fF~Q~~~P~~~~~sg~~~~~~~~~~~~~~P~GnG~lf~aL~~SG~le~l~~~G~e~lfV~nIDNL~~~vD~ 257 (472)
T COG4284 178 FGLDKEDIFFFVQSLFPRLLSDSGLPFLESDDSNLAWYPPGNGDLFKALKSSGILEKLIAQGIEYLFVSNIDNLGATVDL 257 (472)
T ss_pred cCCCHHHeEEEecCCcceeecccCccccccCCcccccCCCCCccHHHHHHhcchHHHHHhcCceEEEEecccccccccCH
Confidence 331 1 11 1111111 222221110 011 1333 455443322211 44444456789999999999653 454
Q ss_pred HHHHHHHHhCCCcEEEEEEEcCCCCCCcceEEE-ECCCCcEEEEEecCCCCCCCCcccccccccCCCCCCCCCCceee-e
Q 015713 230 TEFLQKHIDTKADITVSCVPMDDCRASDYGLMK-IDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIAS-M 307 (402)
Q Consensus 230 ~~~l~~h~~~~aditi~~~~~~~~~~~~~g~v~-iD~~g~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~-~ 307 (402)
.++.++...+.+.++=++.-... ..+-|++. .|+.-+|+++.+-|.......+. + +.+ .....+ .
T Consensus 258 -~~lg~~~~~~~e~~~e~t~Kt~a-~ekvG~Lv~~~g~~rllEysev~~~~~~~~~s-~-~~~---------~~~n~Nni 324 (472)
T COG4284 258 -KFLGFMAETNYEYLMETTDKTKA-DEKVGILVTYDGKLRLLEYSEVPNEHREEFTS-D-GKL---------KYFNTNNI 324 (472)
T ss_pred -HHHHHHHhcCcceeEEEeecccc-cccceEEEEeCCceEEEEEecCChhHhhhhcc-c-cce---------eeeccccc
Confidence 47788888898887766553221 34456655 77778899999887742110000 0 000 012234 7
Q ss_pred eEEEEehHHHHHH
Q 015713 308 GVYLFRTDVLLNL 320 (402)
Q Consensus 308 Giyvf~~~~l~~l 320 (402)
++|+++-+.+.+.
T Consensus 325 ~l~~~~~~~l~~~ 337 (472)
T COG4284 325 WLHLFSVKFLKEA 337 (472)
T ss_pred eeehhHHHHHHhh
Confidence 8899998877654
No 106
>PLN02830 UDP-sugar pyrophosphorylase
Probab=97.56 E-value=0.0025 Score=68.46 Aligned_cols=219 Identities=15% Similarity=0.183 Sum_probs=124.1
Q ss_pred CCeeEEEEcCCCCCcCCCCCCCCCccceecC---CcchHHHHHHHHhHhC-----------C-CCeEEEEccC-CchhHH
Q 015713 91 KNVAAIILGGGAGTRLFPLTNRRAKPAVPIG---GNYRLIDIPMSNCINS-----------G-FNKIFIMTQF-NSFSLN 154 (402)
Q Consensus 91 ~~m~AIILAaG~GtRL~PlT~~~PKpLvpIg---G~~pLId~~i~~l~~~-----------G-I~~IiVv~~~-~~~~i~ 154 (402)
.++..|+||||.|||| ...-||.++|++ |+ ++++..++.+... + .--++|.|.+ +.+...
T Consensus 127 ~kvavllLaGGlGTRL---G~~~pK~~lpv~~~~gk-t~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T~~~T~ 202 (615)
T PLN02830 127 GNAAFVLVAGGLGERL---GYSGIKVALPTETATGT-CYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSDDTHARTL 202 (615)
T ss_pred CcEEEEEecCCccccc---CCCCCCcceecccCCCC-cHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECCcchhHHHH
Confidence 5789999999999999 567899999984 67 8999999987553 1 1246777775 467777
Q ss_pred HHHHhhccCCCCc---c-cCCCcEEEEecc-cCCC-c---C-Ccc-ccCChHHHHHHH--HHHHHhhhcCCCceEEEEcC
Q 015713 155 RHLARSYNLGNGV---N-FGDGFVEVLAAT-QTPG-E---A-GKK-WFQGTADAVRQF--IWVFEDAKNKNVENVLILSG 221 (402)
Q Consensus 155 ~~l~~~y~~~~g~---~-~~~~~V~vl~~~-q~~~-~---~-g~~-~~~Gta~Al~~~--~~~l~~~~~~~~e~~Lvl~g 221 (402)
++|.+.-.||-.. . |..+.+..+... .... + . ... .+-|.++-.... .-.+++....+.+++.+.+.
T Consensus 203 ~~~~~n~~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~~yi~v~~v 282 (615)
T PLN02830 203 KLLERNDYFGMDPDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHGHGDVHALLYSSGLLDKWLSAGKKWVVFFQD 282 (615)
T ss_pred HHHHHCCccCCCccceEEEEcCcceeEecCCCcccccCCCCCccccCCCCccHHHHHHHHCCCHHHHHHcCCEEEEEEec
Confidence 7776421143211 0 111112222111 0000 0 0 111 223555443322 22345555567899999999
Q ss_pred Cc-cCCccHHHHHHHHHhCCCcEEEEEEEcCCCCCCcceEEEE--CCCCc----EEEEEecCCCC---CCCCcccccccc
Q 015713 222 DH-LYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKI--DRSGQ----IIQFAEKPKGP---DLKGMQCDTTLL 291 (402)
Q Consensus 222 D~-l~~~di~~~l~~h~~~~aditi~~~~~~~~~~~~~g~v~i--D~~g~----V~~~~EKp~~~---~~~~~~v~~~~~ 291 (402)
|. |...-...++-.+...++++.+-+.+-.. ...-|++.. ..+|+ |+++.|.+... ..++..++ ..-
T Consensus 283 DN~L~~~Adp~flG~~~~~~~d~~~kvv~K~~--~E~vGvi~~~~~~dG~~l~~vVEYse~~~ll~~a~~p~g~l~-~~~ 359 (615)
T PLN02830 283 TNGLVFKAIPAALGVSATKGFDMNSLAVPRKA--KEAIGAIAKLTHKDGREMVINVEYNQLDPLLRATGHPDGDVN-DET 359 (615)
T ss_pred cchhhhcccHHHhHHHHhcCCceEEEEEECCC--CcccceEEEEecCCCCeeeEEEeecccCHHHHhccCCCcccc-ccc
Confidence 99 44444478899999999999887776532 233444432 23344 33555553220 00001111 001
Q ss_pred cCCCCCCCCCCceeeeeEEEEehHHHHHHHHh
Q 015713 292 GLSMPDAVKFPYIASMGVYLFRTDVLLNLLRS 323 (402)
Q Consensus 292 ~~~~~~a~~~~~~~~~Giyvf~~~~l~~ll~~ 323 (402)
|+ ..+-.++...+++-..+.++++.
T Consensus 360 ~~-------s~FPgNtN~L~v~L~a~~~~l~~ 384 (615)
T PLN02830 360 GY-------SPFPGNINQLILKLGPYVKELAK 384 (615)
T ss_pred cc-------ccCCCCceeeEeeHHHHHHHHHh
Confidence 11 12335788889998888877764
No 107
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=95.95 E-value=0.23 Score=41.06 Aligned_cols=99 Identities=13% Similarity=0.096 Sum_probs=66.9
Q ss_pred ceecCCcchHHHHHHHHhHhCC--CCeEEEEccCCchhHHHHHHhhccCCCCcccCCCcEEEEecccCCCcCCccccCCh
Q 015713 117 AVPIGGNYRLIDIPMSNCINSG--FNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGT 194 (402)
Q Consensus 117 LvpIgG~~pLId~~i~~l~~~G--I~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~~~~V~vl~~~q~~~~~g~~~~~Gt 194 (402)
++|..|..+++.+.++.+...+ ..+|+|+.+...+...+.+.+.... ... +..+.... ..|.
T Consensus 2 ii~~~~~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~------~~~-~~~~~~~~---------~~g~ 65 (156)
T cd00761 2 IIPAYNEEPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYAKK------DPR-VIRVINEE---------NQGL 65 (156)
T ss_pred EEeecCcHHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHHhc------CCC-eEEEEecC---------CCCh
Confidence 3566666699999999999987 7899999988777777766543210 001 22222111 2488
Q ss_pred HHHHHHHHHHHHhhhcCCCceEEEEcCCccCCccH-HHHHHHHH
Q 015713 195 ADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDY-TEFLQKHI 237 (402)
Q Consensus 195 a~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~di-~~~l~~h~ 237 (402)
+.++..++... ..+.++++.+|.++..++ ..++..+.
T Consensus 66 ~~~~~~~~~~~------~~d~v~~~d~D~~~~~~~~~~~~~~~~ 103 (156)
T cd00761 66 AAARNAGLKAA------RGEYILFLDADDLLLPDWLERLVAELL 103 (156)
T ss_pred HHHHHHHHHHh------cCCEEEEECCCCccCccHHHHHHHHHh
Confidence 89988887665 358899999999998875 44434433
No 108
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=95.49 E-value=0.094 Score=47.79 Aligned_cols=85 Identities=16% Similarity=0.194 Sum_probs=58.1
Q ss_pred chHHHHHHHHhHhCCCCeEEEEccCCchhHHHHHHhhccCCCCcccCCCcEEEEecccCCCcCCccccCChHHHHHHHHH
Q 015713 124 YRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIW 203 (402)
Q Consensus 124 ~pLId~~i~~l~~~GI~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~~~~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~ 203 (402)
.|||.|+++.+..+++.+++|+++. +.+.+++. .+ + +.++...+ .|...+++.++.
T Consensus 30 ~~ll~~~l~~l~~~~~~~vvvv~~~--~~~~~~~~-~~--------~---v~~i~~~~----------~G~~~si~~al~ 85 (195)
T TIGR03552 30 LAMLRDVITALRGAGAGAVLVVSPD--PALLEAAR-NL--------G---APVLRDPG----------PGLNNALNAALA 85 (195)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCC--HHHHHHHH-hc--------C---CEEEecCC----------CCHHHHHHHHHH
Confidence 4899999999999988889988874 33433332 11 2 34443221 289999999987
Q ss_pred HHHhhhcCCCceEEEEcCCc-cCC-ccHHHHHHHH
Q 015713 204 VFEDAKNKNVENVLILSGDH-LYR-MDYTEFLQKH 236 (402)
Q Consensus 204 ~l~~~~~~~~e~~Lvl~gD~-l~~-~di~~~l~~h 236 (402)
.+.. ..+.++++.||+ +.. ..+.++++..
T Consensus 86 ~~~~----~~~~vlv~~~D~P~l~~~~i~~l~~~~ 116 (195)
T TIGR03552 86 EARE----PGGAVLILMADLPLLTPRELKRLLAAA 116 (195)
T ss_pred Hhhc----cCCeEEEEeCCCCCCCHHHHHHHHHhc
Confidence 7642 235899999999 344 5577777755
No 109
>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis]
Probab=95.41 E-value=0.055 Score=55.89 Aligned_cols=215 Identities=20% Similarity=0.254 Sum_probs=106.8
Q ss_pred CCeeEEEEcCCCCCcCCCCCCCCCccceecCCcc--hHHHHHHHHhHhC----------C--CCeEEEEccCCchhHHHH
Q 015713 91 KNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNY--RLIDIPMSNCINS----------G--FNKIFIMTQFNSFSLNRH 156 (402)
Q Consensus 91 ~~m~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~--pLId~~i~~l~~~----------G--I~~IiVv~~~~~~~i~~~ 156 (402)
.++.++++|||.|||| ....||.+.|+|..+ .|+++..+.+... | |.=++.+...-++.-.++
T Consensus 96 ~~~a~~llaGgqgtRL---g~~~pkg~~~~G~~~~~slf~~qae~il~lq~~a~~~~~~~~~I~w~ImtS~~T~e~T~~~ 172 (477)
T KOG2388|consen 96 GKVAVVLLAGGQGTRL---GSSGPKGCYPIGLPSGKSLFQIQAERILKLQELASMAVSDGVDIPWYIMTSAFTHEATLEY 172 (477)
T ss_pred CcceEEEeccCceeee---ccCCCcceeecCCccccchhhhhHHHHHHHHHHHhhhhccCCceEEEEecCCCccHHhHhH
Confidence 4688999999999999 567899999998541 4777776655431 2 222333334556666777
Q ss_pred HHhhccCCCCcccCCCcEEEEecccCC--CcCCc----------cccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCcc
Q 015713 157 LARSYNLGNGVNFGDGFVEVLAATQTP--GEAGK----------KWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHL 224 (402)
Q Consensus 157 l~~~y~~~~g~~~~~~~V~vl~~~q~~--~~~g~----------~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l 224 (402)
+..+-.||-. ...|.+.....-+ ...|+ .-+.|.++..+.....++++...+...+-+.+.|.+
T Consensus 173 f~~~~~FGl~----~~qv~~f~Q~~l~c~~~~gk~~le~k~~~a~ap~gngg~y~ai~~~l~dm~~rgi~~~hiy~Vdnv 248 (477)
T KOG2388|consen 173 FESHKYFGLK----PEQVTFFQQGKLPCLDLDGKFILEQKNSLAAAPDGNGGLYRAIKDQLEDMAARGIFYDHIYCVDNV 248 (477)
T ss_pred HhhcCCCCCC----hhHeeeeecccccccccCCceeccCccchhcCCCCCcHHHHHHHhhhhHHHhhcccEEEEEEecce
Confidence 7642214321 1112222111100 00111 123577776666666677765566777777777774
Q ss_pred C-CccHHHHHHHHHhCCCcEEEEEEEcCCCCCCcceEEEECCCC--cEEEEEecCCCCCCCCcccccccccCCCCCCCCC
Q 015713 225 Y-RMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSG--QIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKF 301 (402)
Q Consensus 225 ~-~~di~~~l~~h~~~~aditi~~~~~~~~~~~~~g~v~iD~~g--~V~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~ 301 (402)
. ..--.-++-.....++++.-.+++-.+ ...--|++..+++| .|.++.|--... .+.--.|++.+-
T Consensus 249 L~k~aDP~fiG~~it~~~d~~~k~V~k~~-p~E~vG~~~~~~~G~~~vvEYsEi~~~~-a~~~~~d~g~l~--------- 317 (477)
T KOG2388|consen 249 LLKVADPVFIGFSITKEADVAAKVVPKIN-PGEVVGIVALKGQGTPLVVEYSELDAEL-AKAKAPDGGRLL--------- 317 (477)
T ss_pred eeEecccceeeEEeechhhHhhhhccccC-CCCceEEEEecCCCceeEEEecccCHHH-HhhcccccCccc---------
Confidence 3 221122333333344443222222111 12345777766544 344444432111 011111211121
Q ss_pred CceeeeeEEEEehHHHHHHHHh
Q 015713 302 PYIASMGVYLFRTDVLLNLLRS 323 (402)
Q Consensus 302 ~~~~~~Giyvf~~~~l~~ll~~ 323 (402)
...-+..-++|+.++|.+..+.
T Consensus 318 ~~agnI~nh~ft~dFLkk~~~~ 339 (477)
T KOG2388|consen 318 FNAGNICNHFFTLDFLKKVTRA 339 (477)
T ss_pred cCCccHHHHHHhhHHHHHhhhc
Confidence 1223445577777877766443
No 110
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=92.39 E-value=0.33 Score=54.90 Aligned_cols=140 Identities=21% Similarity=0.257 Sum_probs=93.9
Q ss_pred eEEEEcCCccCCccHHHHHHHHHhCCCcEEEEEEEcCCCCCCcceEEEECCC--CcEEEEEecCCCCCCCCccccccccc
Q 015713 215 NVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRS--GQIIQFAEKPKGPDLKGMQCDTTLLG 292 (402)
Q Consensus 215 ~~Lvl~gD~l~~~di~~~l~~h~~~~aditi~~~~~~~~~~~~~g~v~iD~~--g~V~~~~EKp~~~~~~~~~v~~~~~~ 292 (402)
.++|.+||.+..++=. +.. -..++++....+.+.+...+.|++..|.+ +++..+..||..++..+..
T Consensus 154 g~li~~gDv~~~f~~~--~~~--~~~~~~~~~~~~~~~~~~~~HGVfv~~~~~~~~~~~~LqKps~eel~a~~------- 222 (974)
T PRK13412 154 HTLIASGDVYIRSEQP--LQD--IPEADVVCYGLWVDPSLATNHGVFVSSRKSPERLDFMLQKPSLEELGGLS------- 222 (974)
T ss_pred ceEEEecchhhhcccc--ccC--CCccCeEEEEeccChhhccCceEEEeCCCChHHHHHHhcCCCHHHHHhhh-------
Confidence 7999999987655411 111 23466666666666566788999999887 6888999999876542211
Q ss_pred CCCCCCCCCCceeeeeEEEEehHHHHHHHHhhCC------CCCchhhccHHhhhcC----------CcEEEEEE-cCeEE
Q 015713 293 LSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYP------LSNDFGSEIIPASVKD----------HNVQAFLF-NDYWE 355 (402)
Q Consensus 293 ~~~~~a~~~~~~~~~Giyvf~~~~l~~ll~~~~~------~~~d~~~~ii~~li~~----------~~v~a~~~-~g~w~ 355 (402)
+....+.++|+|+|+......|++..+. ...|..+|++..+-.+ .++..... ++.|+
T Consensus 223 ------~~~~~l~D~g~~~~~~~a~~~L~~~~~~~~~~~~~~~dlY~Df~~aLg~~~~~~~~el~~l~~~i~~L~~~~F~ 296 (974)
T PRK13412 223 ------KTHLFLMDIGIWLLSDRAVELLMKRSGKEDGGKLKYYDLYSDFGLALGTHPRIGDDELNALSVAILPLPGGEFY 296 (974)
T ss_pred ------cCCeEEEeeeEEEEChHHHHHHHHhhhcccCCcceeeehHHHHHHhcCCCCCcchhhhcccceEEEEcCCceeE
Confidence 1234678999999999988777655432 1345666777664432 45555555 45799
Q ss_pred ecCCHHHHHHHHhHhh
Q 015713 356 DIGTIKSFFMPIWPSQ 371 (402)
Q Consensus 356 DIgtp~d~~~A~~~ll 371 (402)
-+||-..|......+.
T Consensus 297 H~GTs~E~l~~~~~~q 312 (974)
T PRK13412 297 HYGTSRELISSTLAVQ 312 (974)
T ss_pred EecCcHHHhcCchhHH
Confidence 9999998887544433
No 111
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=91.25 E-value=3.7 Score=34.60 Aligned_cols=110 Identities=14% Similarity=0.155 Sum_probs=69.2
Q ss_pred eecCCcchHHHHHHHHhHhC--CCCeEEEEccCCchhHHHHHHhhccCCCCcccCCCcEEEEecccCCCcCCccccCChH
Q 015713 118 VPIGGNYRLIDIPMSNCINS--GFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTA 195 (402)
Q Consensus 118 vpIgG~~pLId~~i~~l~~~--GI~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~~~~V~vl~~~q~~~~~g~~~~~Gta 195 (402)
+|.-+....|..+++.+.+. ...+|+|+-........+.+.+.. . ....++++...+. .|-+
T Consensus 4 ip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~--~-----~~~~i~~i~~~~n---------~g~~ 67 (169)
T PF00535_consen 4 IPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYA--E-----SDPNIRYIRNPEN---------LGFS 67 (169)
T ss_dssp EEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHH--C-----CSTTEEEEEHCCC---------SHHH
T ss_pred EEeeCCHHHHHHHHHHHhhccCCCEEEEEecccccccccccccccc--c-----ccccccccccccc---------cccc
Confidence 55656556788888888775 456777776655444444444322 1 1113667654432 3788
Q ss_pred HHHHHHHHHHHhhhcCCCceEEEEcCCccCCcc-HHHHHHHHHhCCCcEEEEEEE
Q 015713 196 DAVRQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHIDTKADITVSCVP 249 (402)
Q Consensus 196 ~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~d-i~~~l~~h~~~~aditi~~~~ 249 (402)
.++..++.... .+.++++..|.++..+ +..+++.+.+.+.++.+....
T Consensus 68 ~~~n~~~~~a~------~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 116 (169)
T PF00535_consen 68 AARNRGIKHAK------GEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGSVI 116 (169)
T ss_dssp HHHHHHHHH--------SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEEEE
T ss_pred ccccccccccc------eeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 88888876653 5799999999988777 678888888877766554443
No 112
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=87.59 E-value=37 Score=35.05 Aligned_cols=262 Identities=15% Similarity=0.240 Sum_probs=133.2
Q ss_pred CCCeeEEEEcCCCCCcCCCCCCCCCccceecCCcchHHHHHHHHhHhC----CCC-eEEEEccCCchhHHHHHHhhccCC
Q 015713 90 PKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINS----GFN-KIFIMTQFNSFSLNRHLARSYNLG 164 (402)
Q Consensus 90 ~~~m~AIILAaG~GtRL~PlT~~~PKpLvpIgG~~pLId~~i~~l~~~----GI~-~IiVv~~~~~~~i~~~l~~~y~~~ 164 (402)
-+++..+=|-||.||-|+ -.-||.+++|-+.+..+|-++.+.... +++ -.++...++-++--+.+.+.|. +
T Consensus 101 L~KLavlKLNGGlGttmG---c~gPKS~ieVR~g~tFLDL~V~QIe~LN~~Y~~dVPlvLMNSfnTdedT~kil~ky~-~ 176 (498)
T KOG2638|consen 101 LNKLAVLKLNGGLGTTMG---CKGPKSVIEVRDGLTFLDLTVRQIENLNKTYNVDVPLVLMNSFNTDEDTQKILKKYA-G 176 (498)
T ss_pred hhheEEEEecCCcCCccc---cCCCceeEEEcCCCchhHHHHHHHHHHHhhcCCCCCEEEecccccchHHHHHHHHhc-C
Confidence 456778889999999994 567999999987778888776665443 333 3556666766544444444551 2
Q ss_pred CCcccC---C-CcEEEEecccC-----CCcCC-cccc-CChHHHHHHH--HHHHHhhhcCCCceEEEEcCCccCC-ccHH
Q 015713 165 NGVNFG---D-GFVEVLAATQT-----PGEAG-KKWF-QGTADAVRQF--IWVFEDAKNKNVENVLILSGDHLYR-MDYT 230 (402)
Q Consensus 165 ~g~~~~---~-~~V~vl~~~q~-----~~~~g-~~~~-~Gta~Al~~~--~~~l~~~~~~~~e~~Lvl~gD~l~~-~di~ 230 (402)
..+.+. . .+.+|..++.- .++.+ ..|+ -|.++-.... .-.++.....+.|.++|.+.|.+-- .|+.
T Consensus 177 ~kv~i~TF~QS~~PRi~~etlLPv~~~~~d~~~d~WYPPGHGd~f~sl~nSG~Ld~llaqGkEylFVSNiDNLGAtvDL~ 256 (498)
T KOG2638|consen 177 SKVDIKTFNQSKYPRIDKETLLPVPKLEADSDNEAWYPPGHGDLFDSLHNSGLLDKLLAQGKEYLFVSNIDNLGATVDLN 256 (498)
T ss_pred CceeEEEeccccCCccccccccCCCcccCCCCcccccCCCCccHHHHHhccchHHHHHhCCceEEEEeccccccceeeHH
Confidence 221111 0 01112111111 12222 3576 3555432211 1122222234679999999999874 5543
Q ss_pred HHHHHHHhCCCcEEEEEEEcCCCCCCcceEEEECCCCcE--EEEEecCCCCCCCCcccccccccCCCCCCCCCCceeeee
Q 015713 231 EFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQI--IQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMG 308 (402)
Q Consensus 231 ~~l~~h~~~~aditi~~~~~~~~~~~~~g~v~iD~~g~V--~~~~EKp~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~G 308 (402)
++++..+.+.+..|=+++-... ...-|. -++-+|++ .++..-|.....+.+.+ +++ .+.++.
T Consensus 257 -ILn~~i~~~~ey~MEvTdKT~a-DvKgGt-Li~y~G~lrlLEiaQVP~ehv~eFkS~------------kkF-kifNTN 320 (498)
T KOG2638|consen 257 -ILNHVINNNIEYLMEVTDKTRA-DVKGGT-LIQYEGKLRLLEIAQVPKEHVDEFKSI------------KKF-KIFNTN 320 (498)
T ss_pred -HHHHHhcCCCceEEEecccchh-hcccce-EEeecCEEEEEEeccCChhHhhhhccc------------eeE-EEeccC
Confidence 5666677777777766654321 112232 23334544 45554454321111000 011 234444
Q ss_pred EEEEehHHHHHHHHhhC------CC--CCchh------hccHHhhhcC--CcEEEEEEcCeEEecCCHHHHHHHHhHhh
Q 015713 309 VYLFRTDVLLNLLRSSY------PL--SNDFG------SEIIPASVKD--HNVQAFLFNDYWEDIGTIKSFFMPIWPSQ 371 (402)
Q Consensus 309 iyvf~~~~l~~ll~~~~------~~--~~d~~------~~ii~~li~~--~~v~a~~~~g~w~DIgtp~d~~~A~~~ll 371 (402)
-..+.-..+.++++... ++ .-+.. +-.+-.+++. +.+....-...|..+.|-.|++-..-.|-
T Consensus 321 NlWinLkavKrlve~~~l~meIi~N~kti~~~~~viQleTa~GaaIk~F~na~gv~VpRsRFlPVKt~sDLlLv~S~Ly 399 (498)
T KOG2638|consen 321 NLWINLKAVKKLVEENALNMEIIVNPKTIDRGIEVIQLETAAGAAIKFFDNAIGVNVPRSRFLPVKTCSDLLLVMSNLY 399 (498)
T ss_pred CeEEehHHHHHHhhcCcccceeecChhhccCCceEEEEhhhhhHHHHhCCCceeeeccccccccccccccceeeeccee
Confidence 45555566666665422 11 11111 2223344443 22333333456788888887776555444
No 113
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=86.93 E-value=14 Score=33.82 Aligned_cols=96 Identities=15% Similarity=0.186 Sum_probs=61.4
Q ss_pred eecCCcc-hHHHHHHHHhHhCCCCeEEEEccCCchhHHHHHHhhccCCCCcccCCCcEEEEecccCCCcCCccccCChHH
Q 015713 118 VPIGGNY-RLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTAD 196 (402)
Q Consensus 118 vpIgG~~-pLId~~i~~l~~~GI~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~~~~V~vl~~~q~~~~~g~~~~~Gta~ 196 (402)
+|.-+.. ..|...++.+.+...-+|+||...........+.... ....+.++...+ .|-+.
T Consensus 6 Ip~~ne~~~~l~~~l~sl~~q~~~eiivvdd~s~d~~~~~l~~~~--------~~~~~~v~~~~~----------~g~~~ 67 (235)
T cd06434 6 IPVYDEDPDVFRECLRSILRQKPLEIIVVTDGDDEPYLSILSQTV--------KYGGIFVITVPH----------PGKRR 67 (235)
T ss_pred EeecCCChHHHHHHHHHHHhCCCCEEEEEeCCCChHHHHHHHhhc--------cCCcEEEEecCC----------CChHH
Confidence 4555554 6788888888876566888887766655555442221 111244544221 36777
Q ss_pred HHHHHHHHHHhhhcCCCceEEEEcCCccCCcc-HHHHHHHHH
Q 015713 197 AVRQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHI 237 (402)
Q Consensus 197 Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~d-i~~~l~~h~ 237 (402)
++..++... ..+.++++.+|.....+ +.++++...
T Consensus 68 a~n~g~~~a------~~d~v~~lD~D~~~~~~~l~~l~~~~~ 103 (235)
T cd06434 68 ALAEGIRHV------TTDIVVLLDSDTVWPPNALPEMLKPFE 103 (235)
T ss_pred HHHHHHHHh------CCCEEEEECCCceeChhHHHHHHHhcc
Confidence 887766543 46999999999999887 466666654
No 114
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=86.53 E-value=17 Score=31.63 Aligned_cols=108 Identities=14% Similarity=0.112 Sum_probs=63.8
Q ss_pred eecCCcchHHHHHHHHhHhC----CCCeEEEEccCCchhHHHHHHhhccCCCCcccCCCcEEEEecccCCCcCCccccCC
Q 015713 118 VPIGGNYRLIDIPMSNCINS----GFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQG 193 (402)
Q Consensus 118 vpIgG~~pLId~~i~~l~~~----GI~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~~~~V~vl~~~q~~~~~g~~~~~G 193 (402)
+|.-+....|..+++.+.+. ..-+|+|+-+.......+.+.+ + . .++. .+.++...+. .|
T Consensus 3 i~~~n~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~-~--~--~~~~--~~~~~~~~~n---------~G 66 (185)
T cd04179 3 IPAYNEEENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIARE-L--A--ARVP--RVRVIRLSRN---------FG 66 (185)
T ss_pred ecccChHhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHHH-H--H--HhCC--CeEEEEccCC---------CC
Confidence 44445434566677777665 3567777765544333333332 2 0 0111 1344443332 47
Q ss_pred hHHHHHHHHHHHHhhhcCCCceEEEEcCCccCCcc-HHHHHHHHHhCCCcEEEEE
Q 015713 194 TADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHIDTKADITVSC 247 (402)
Q Consensus 194 ta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~d-i~~~l~~h~~~~aditi~~ 247 (402)
-+.++..++... ..+.++++.+|.....+ +.+++......+.++.+..
T Consensus 67 ~~~a~n~g~~~a------~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~ 115 (185)
T cd04179 67 KGAAVRAGFKAA------RGDIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIGS 115 (185)
T ss_pred ccHHHHHHHHHh------cCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEE
Confidence 888888777654 34899999999987766 5777776566666665443
No 115
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=86.51 E-value=0.2 Score=47.63 Aligned_cols=36 Identities=22% Similarity=0.244 Sum_probs=32.2
Q ss_pred hccHHhhhcCCcEEEEEEcCeEEecCCHHHHHHHHhHhhccc
Q 015713 333 SEIIPASVKDHNVQAFLFNDYWEDIGTIKSFFMPIWPSQNSL 374 (402)
Q Consensus 333 ~~ii~~li~~~~v~a~~~~g~w~DIgtp~d~~~A~~~ll~~~ 374 (402)
.|.++.+++++ ++..+|||.|| ++|++|++.++.+.
T Consensus 31 ~~~~~~~~~~~---~~~~~gyW~Di---~~yl~an~diL~~~ 66 (231)
T TIGR03532 31 PESIKKFGSGH---SGVLFGEWEDI---EPFIEANKDKIKDY 66 (231)
T ss_pred chheEEEecCC---cEEEEEeHHHH---HHHHHHhHhhhcce
Confidence 68888888776 88999999999 99999999999874
No 116
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=85.66 E-value=21 Score=32.67 Aligned_cols=108 Identities=12% Similarity=0.178 Sum_probs=64.7
Q ss_pred eecCCcchHHHHHHHHhHhCCC----CeEEEEccCCchhHHHHHHhhccCCCCcccCCCcEEEEecccCCCcCCccccCC
Q 015713 118 VPIGGNYRLIDIPMSNCINSGF----NKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQG 193 (402)
Q Consensus 118 vpIgG~~pLId~~i~~l~~~GI----~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~~~~V~vl~~~q~~~~~g~~~~~G 193 (402)
+|.-+..+.|...++.+.+... -+|+|+-+.......+.+.. + .. + ...+.++.... .|
T Consensus 6 ip~~n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~-~--~~--~--~~~v~~i~~~~----------~~ 68 (249)
T cd02525 6 IPVRNEEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQE-Y--AA--K--DPRIRLIDNPK----------RI 68 (249)
T ss_pred EEcCCchhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHH-H--Hh--c--CCeEEEEeCCC----------CC
Confidence 4555555677888888876543 37777766555444444432 1 11 0 11255554221 25
Q ss_pred hHHHHHHHHHHHHhhhcCCCceEEEEcCCccCCcc-HHHHHHHHHhCCCcEEEEEE
Q 015713 194 TADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHIDTKADITVSCV 248 (402)
Q Consensus 194 ta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~d-i~~~l~~h~~~~aditi~~~ 248 (402)
-+.++..++... ..+.++++.+|.+...+ +.++++.+.+.+.++.....
T Consensus 69 ~~~a~N~g~~~a------~~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~~ 118 (249)
T cd02525 69 QSAGLNIGIRNS------RGDIIIRVDAHAVYPKDYILELVEALKRTGADNVGGPM 118 (249)
T ss_pred chHHHHHHHHHh------CCCEEEEECCCccCCHHHHHHHHHHHhcCCCCEEecce
Confidence 566777776554 46899999999988776 57777766666655544333
No 117
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=85.04 E-value=0.93 Score=46.84 Aligned_cols=96 Identities=22% Similarity=0.370 Sum_probs=63.6
Q ss_pred CceEEEEcCCccC-CccHHHHHHHHHhCCCcEEEEEEEcCCCCCCcceEEEECCCC---------cEEEEEecCCCCCCC
Q 015713 213 VENVLILSGDHLY-RMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSG---------QIIQFAEKPKGPDLK 282 (402)
Q Consensus 213 ~e~~Lvl~gD~l~-~~di~~~l~~h~~~~aditi~~~~~~~~~~~~~g~v~iD~~g---------~V~~~~EKp~~~~~~ 282 (402)
..-++|.+||+++ ..+- ..+.. .++++++...|.+-+.+.+-|+.++|+++ .+..|..||..++..
T Consensus 53 ppGv~V~s~D~vl~~~~~-~~~~~---~~~g~~~la~p~~~~~at~HGVfv~~~~~~~~~~~~~~~v~~~L~KpS~eem~ 128 (414)
T PF07959_consen 53 PPGVLVCSGDMVLSVPDD-PLIDW---DEPGVTALAHPSSLEYATNHGVFVLDRQGPDEEDLEYREVKDFLQKPSEEEMR 128 (414)
T ss_pred hcceEEEecccccccCcc-ccCCC---CCCCEEEEEeeCCHHHhcCCeEEEeCCCCCccccchhhhHHHhhcCCCHHHHH
Confidence 3468999999544 3331 12211 23678888888876667888999999998 899999999876531
Q ss_pred CcccccccccCCCCCCCCCCceeeeeEEEEehHHHHHHHH
Q 015713 283 GMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLR 322 (402)
Q Consensus 283 ~~~v~~~~~~~~~~~a~~~~~~~~~Giyvf~~~~l~~ll~ 322 (402)
. ...+. ........+|++.|+.+..+.++.
T Consensus 129 ~---~~av~-------~~~~~~ldsG~~~~s~~~~e~L~~ 158 (414)
T PF07959_consen 129 A---SGAVL-------PDGNVLLDSGIVFFSSKAVESLLY 158 (414)
T ss_pred h---CCccc-------CCCcccccccceeccHHHHHHHHH
Confidence 1 00000 112345688999999887776643
No 118
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=83.85 E-value=26 Score=31.58 Aligned_cols=51 Identities=16% Similarity=0.195 Sum_probs=38.3
Q ss_pred CChHHHHHHHHHHHHhhhcCCCceEEEEcCCccCCcc-HHHHHHHHHhCCCcEEEEEE
Q 015713 192 QGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHIDTKADITVSCV 248 (402)
Q Consensus 192 ~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~d-i~~~l~~h~~~~aditi~~~ 248 (402)
.|-+.|+..++... ..+.++++.+|..+..+ +.++++...+.+.++.+...
T Consensus 68 ~G~~~a~~~g~~~a------~gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~g~r 119 (211)
T cd04188 68 RGKGGAVRAGMLAA------RGDYILFADADLATPFEELEKLEEALKTSGYDIAIGSR 119 (211)
T ss_pred CCcHHHHHHHHHHh------cCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEEe
Confidence 48889998887665 35899999999988765 67777775666667655543
No 119
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=81.86 E-value=30 Score=29.10 Aligned_cols=98 Identities=11% Similarity=0.064 Sum_probs=62.6
Q ss_pred eecCCcchHHHHHHHHhHhC--CCCeEEEEccCCchhHHHHHHhhccCCCCcccCCCcEEEEecccCCCcCCccccCChH
Q 015713 118 VPIGGNYRLIDIPMSNCINS--GFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTA 195 (402)
Q Consensus 118 vpIgG~~pLId~~i~~l~~~--GI~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~~~~V~vl~~~q~~~~~g~~~~~Gta 195 (402)
+|.-+...++...++.+.+. ...+|+|+-........+.+.+.+ . .+.++.... ..|.+
T Consensus 3 i~~~~~~~~l~~~l~sl~~~~~~~~~iiivdd~s~~~~~~~~~~~~---~-------~~~~~~~~~---------~~g~~ 63 (166)
T cd04186 3 IVNYNSLEYLKACLDSLLAQTYPDFEVIVVDNASTDGSVELLRELF---P-------EVRLIRNGE---------NLGFG 63 (166)
T ss_pred EEecCCHHHHHHHHHHHHhccCCCeEEEEEECCCCchHHHHHHHhC---C-------CeEEEecCC---------CcChH
Confidence 55656657888899998875 345777777655544444444322 0 245544222 24788
Q ss_pred HHHHHHHHHHHhhhcCCCceEEEEcCCccCCcc-HHHHHHHHHhCC
Q 015713 196 DAVRQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHIDTK 240 (402)
Q Consensus 196 ~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~d-i~~~l~~h~~~~ 240 (402)
.++..++... ..+.++++..|..+..+ +..+++...+..
T Consensus 64 ~a~n~~~~~~------~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~ 103 (166)
T cd04186 64 AGNNQGIREA------KGDYVLLLNPDTVVEPGALLELLDAAEQDP 103 (166)
T ss_pred HHhhHHHhhC------CCCEEEEECCCcEECccHHHHHHHHHHhCC
Confidence 8888877655 46889999999988766 566666554443
No 120
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=79.32 E-value=35 Score=28.36 Aligned_cols=101 Identities=13% Similarity=0.105 Sum_probs=59.5
Q ss_pred eecCCcchHHHHHHHHhHhCC--CCeEEEEccCCchhHHHHHHhhccCCCCcccCCCcEEEEecccCCCcCCccccCChH
Q 015713 118 VPIGGNYRLIDIPMSNCINSG--FNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTA 195 (402)
Q Consensus 118 vpIgG~~pLId~~i~~l~~~G--I~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~~~~V~vl~~~q~~~~~g~~~~~Gta 195 (402)
+|.-+....|..+++.+.+.. .-+|+|+-........+.+.+.. .. .. ..+.++..... .|.+
T Consensus 3 ip~~n~~~~l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~~~~~~--~~---~~-~~~~~~~~~~~---------~g~~ 67 (180)
T cd06423 3 VPAYNEEAVIERTIESLLALDYPKLEVIVVDDGSTDDTLEILEELA--AL---YI-RRVLVVRDKEN---------GGKA 67 (180)
T ss_pred ecccChHHHHHHHHHHHHhCCCCceEEEEEeCCCccchHHHHHHHh--cc---cc-ceEEEEEeccc---------CCch
Confidence 455565567888888888864 45777776654443334443221 00 00 11333332221 4788
Q ss_pred HHHHHHHHHHHhhhcCCCceEEEEcCCccCCccH-HHHHHHHHhC
Q 015713 196 DAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDY-TEFLQKHIDT 239 (402)
Q Consensus 196 ~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~di-~~~l~~h~~~ 239 (402)
.++..++... ..+.++++.+|.+...++ ..++..+.+.
T Consensus 68 ~~~n~~~~~~------~~~~i~~~D~D~~~~~~~l~~~~~~~~~~ 106 (180)
T cd06423 68 GALNAGLRHA------KGDIVVVLDADTILEPDALKRLVVPFFAD 106 (180)
T ss_pred HHHHHHHHhc------CCCEEEEECCCCCcChHHHHHHHHHhccC
Confidence 8888776654 468899999999887774 5554554443
No 121
>PRK10073 putative glycosyl transferase; Provisional
Probab=79.06 E-value=29 Score=34.44 Aligned_cols=106 Identities=15% Similarity=0.182 Sum_probs=62.6
Q ss_pred eecCCcchHHHHHHHHhHhCCCC--eEEEEccCCchhHHHHHHhhccCCCCcccCCCcEEEEecccCCCcCCccccCChH
Q 015713 118 VPIGGNYRLIDIPMSNCINSGFN--KIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTA 195 (402)
Q Consensus 118 vpIgG~~pLId~~i~~l~~~GI~--~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~~~~V~vl~~~q~~~~~g~~~~~Gta 195 (402)
+|+-+....|..+++.+.+.... +|+||-......-.+ +.+.|. . ....|.++...+ .|.+
T Consensus 12 IP~yN~~~~L~~~l~Sl~~Qt~~~~EIIiVdDgStD~t~~-i~~~~~-~-----~~~~i~vi~~~n----------~G~~ 74 (328)
T PRK10073 12 IPLYNAGKDFRAFMESLIAQTWTALEIIIVNDGSTDNSVE-IAKHYA-E-----NYPHVRLLHQAN----------AGVS 74 (328)
T ss_pred EeccCCHHHHHHHHHHHHhCCCCCeEEEEEeCCCCccHHH-HHHHHH-h-----hCCCEEEEECCC----------CChH
Confidence 45555546788888888875433 566664432221111 222220 0 011366664221 3788
Q ss_pred HHHHHHHHHHHhhhcCCCceEEEEcCCccCCcc-HHHHHHHHHhCCCcEEEE
Q 015713 196 DAVRQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHIDTKADITVS 246 (402)
Q Consensus 196 ~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~d-i~~~l~~h~~~~aditi~ 246 (402)
.|...++... ..+.++++.+|.+...+ +..+++...+.+.++.++
T Consensus 75 ~arN~gl~~a------~g~yi~flD~DD~~~p~~l~~l~~~~~~~~~dvv~~ 120 (328)
T PRK10073 75 VARNTGLAVA------TGKYVAFPDADDVVYPTMYETLMTMALEDDLDVAQC 120 (328)
T ss_pred HHHHHHHHhC------CCCEEEEECCCCccChhHHHHHHHHHHhCCCCEEEE
Confidence 8877776554 46899999999988776 567777766667776543
No 122
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=78.49 E-value=55 Score=30.44 Aligned_cols=49 Identities=22% Similarity=0.211 Sum_probs=36.4
Q ss_pred CChHHHHHHHHHHHHhhhcCCCceEEEEcCCccCCcc-HHHHHHHHHhCCCcEEEE
Q 015713 192 QGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHIDTKADITVS 246 (402)
Q Consensus 192 ~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~d-i~~~l~~h~~~~aditi~ 246 (402)
.|-+.|+..++... ..+.++++.+|..++.+ +.++++...+.++++++.
T Consensus 79 ~G~~~a~n~g~~~a------~g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g 128 (243)
T PLN02726 79 LGLGTAYIHGLKHA------SGDFVVIMDADLSHHPKYLPSFIKKQRETGADIVTG 128 (243)
T ss_pred CCHHHHHHHHHHHc------CCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEE
Confidence 47788888776543 46899999999988765 577887766667777544
No 123
>COG1920 Predicted nucleotidyltransferase, CobY/MobA/RfbA family [General function prediction only]
Probab=76.90 E-value=46 Score=30.91 Aligned_cols=110 Identities=20% Similarity=0.155 Sum_probs=64.4
Q ss_pred eeEEEEc---CCCCCcCCCCCCC-CCccceecCCcchHHHHHHHHhHhCCCCeEEEEccCCchhHHHHHHhhccCCCCcc
Q 015713 93 VAAIILG---GGAGTRLFPLTNR-RAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVN 168 (402)
Q Consensus 93 m~AIILA---aG~GtRL~PlT~~-~PKpLvpIgG~~pLId~~i~~l~~~GI~~IiVv~~~~~~~i~~~l~~~y~~~~g~~ 168 (402)
|.+||+- ++.-|||.|.-+. .-+.++ +-|+-.++..+... +.+|-|++.. +.+..
T Consensus 1 mr~iIPvk~~~~aKTRLs~~lS~eeRe~~~-----laML~dvi~Al~~~-~~~i~Vvtpd--e~~~~------------- 59 (210)
T COG1920 1 MRAIIPVKRLADAKTRLSPVLSAEERENFA-----LAMLVDVLGALAGV-LGEITVVTPD--EEVLV------------- 59 (210)
T ss_pred CceEEeccccCcchhccccccCHHHHHHHH-----HHHHHHHHHHhhhh-cCCceEEcCC--hHhhh-------------
Confidence 4566764 4677898765321 111111 35888888888776 8999999863 21111
Q ss_pred cCCCcEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCc--cCCccHHHHHHHHHhCCCcE
Q 015713 169 FGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH--LYRMDYTEFLQKHIDTKADI 243 (402)
Q Consensus 169 ~~~~~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~--l~~~di~~~l~~h~~~~adi 243 (402)
++.+ .+|+.+. +--.|+.++++.+. ....|+|+.+|. +...++.+++...++ +++
T Consensus 60 ~a~~-~~vl~d~------------dLN~Ai~aa~~~~~-----~p~~v~vvmaDLPLl~~~~i~~~~~~~~d--~dv 116 (210)
T COG1920 60 PATK-LEVLADP------------DLNTAINAALDEIP-----LPSEVIVVMADLPLLSPEHIERALSAAKD--ADV 116 (210)
T ss_pred hccc-ceeeecc------------chHHHHHHHHhhCC-----CCcceEEEecccccCCHHHHHHHHHhcCC--CcE
Confidence 1111 2455431 23346666665553 125699999999 556778888876443 444
No 124
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=75.66 E-value=67 Score=29.67 Aligned_cols=108 Identities=9% Similarity=0.070 Sum_probs=60.0
Q ss_pred eecCCcchHHHHHHHHhHhCCC----CeEEEEccCCchhHHHHHHhhccCCCCcccCCCcEEEEecccCCCcCCccccCC
Q 015713 118 VPIGGNYRLIDIPMSNCINSGF----NKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQG 193 (402)
Q Consensus 118 vpIgG~~pLId~~i~~l~~~GI----~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~~~~V~vl~~~q~~~~~g~~~~~G 193 (402)
+|.-+..-.|...++.+.+..- =+|+||.......-.+.+ +.+... . .+.++..... ...|
T Consensus 7 Ip~~Ne~~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~-~~~~~~-----~--~~~i~~~~~~-------~~~G 71 (241)
T cd06427 7 VPLYKEAEVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAA-RALRLP-----S--IFRVVVVPPS-------QPRT 71 (241)
T ss_pred EecCCcHHHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHH-HHhccC-----C--CeeEEEecCC-------CCCc
Confidence 4555544566777777766432 156666554333322333 333110 0 1233322221 1247
Q ss_pred hHHHHHHHHHHHHhhhcCCCceEEEEcCCccCCcc-HHHHHHHHHhCCCcEEEE
Q 015713 194 TADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHIDTKADITVS 246 (402)
Q Consensus 194 ta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~d-i~~~l~~h~~~~aditi~ 246 (402)
-+.|+..++... ..+.++++.+|.....+ +.+++....+.+.++.++
T Consensus 72 ~~~a~n~g~~~a------~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~ 119 (241)
T cd06427 72 KPKACNYALAFA------RGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACV 119 (241)
T ss_pred hHHHHHHHHHhc------CCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEE
Confidence 888888887653 45899999999998877 467777765544555433
No 125
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=73.28 E-value=57 Score=30.31 Aligned_cols=103 Identities=16% Similarity=0.207 Sum_probs=62.4
Q ss_pred hHHHHHHHHhH-hCCCC-eEEEEcc---CCchhHHHHHHhhccCCCCcccCCCcEEEEecccCCCcCCccccCChHHHHH
Q 015713 125 RLIDIPMSNCI-NSGFN-KIFIMTQ---FNSFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVR 199 (402)
Q Consensus 125 pLId~~i~~l~-~~GI~-~IiVv~~---~~~~~i~~~l~~~y~~~~g~~~~~~~V~vl~~~q~~~~~g~~~~~Gta~Al~ 199 (402)
|++-|.+.... +.|.+ +|+||-. .....+.+.|++.| |...|.+..-+.. +|-+.|..
T Consensus 19 pi~~~li~~~~~e~~~~~eiIivDD~SpDGt~~~a~~L~k~y--------g~d~i~l~pR~~k---------lGLgtAy~ 81 (238)
T KOG2978|consen 19 PIITRLIAKYMSEEGKKYEIIIVDDASPDGTQEVAKALQKIY--------GEDNILLKPRTKK---------LGLGTAYI 81 (238)
T ss_pred eeeHHHHHhhhhhhcCceEEEEEeCCCCCccHHHHHHHHHHh--------CCCcEEEEeccCc---------ccchHHHH
Confidence 34444444443 35665 5555532 12245666666665 3334665543332 46777777
Q ss_pred HHHHHHHhhhcCCCceEEEEcCCccCCcc-HHHHHHHHHhCCCcEEEEEEEc
Q 015713 200 QFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHIDTKADITVSCVPM 250 (402)
Q Consensus 200 ~~~~~l~~~~~~~~e~~Lvl~gD~l~~~d-i~~~l~~h~~~~aditi~~~~~ 250 (402)
.++.+. ..+.++++.+|.-.++. +.+|++..++.+-|++....-.
T Consensus 82 hgl~~a------~g~fiviMDaDlsHhPk~ipe~i~lq~~~~~div~GTRYa 127 (238)
T KOG2978|consen 82 HGLKHA------TGDFIVIMDADLSHHPKFIPEFIRLQKEGNYDIVLGTRYA 127 (238)
T ss_pred hhhhhc------cCCeEEEEeCccCCCchhHHHHHHHhhccCcceeeeeeEc
Confidence 776544 35778889999877655 6899988888877887655433
No 126
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=73.05 E-value=67 Score=30.93 Aligned_cols=104 Identities=13% Similarity=0.118 Sum_probs=61.3
Q ss_pred eecCCcc-hHHHHHHHHhHhCC----CCeEEEEccCCchhHHHHHHhhccCCCCcccCCCcEEEEecccCCCcCCccccC
Q 015713 118 VPIGGNY-RLIDIPMSNCINSG----FNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQ 192 (402)
Q Consensus 118 vpIgG~~-pLId~~i~~l~~~G----I~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~~~~V~vl~~~q~~~~~g~~~~~ 192 (402)
+|.-+.. ..|...++.+.+.- ..+|+||-+.....-...+.+.+ ... ....|.++...+. .
T Consensus 4 Ip~~N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~-~~~----~~~~v~vi~~~~n---------~ 69 (299)
T cd02510 4 IIFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEY-YKK----YLPKVKVLRLKKR---------E 69 (299)
T ss_pred EEEecCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHHH-Hhh----cCCcEEEEEcCCC---------C
Confidence 4555664 57788888887642 13787776543332222221110 000 0112666654332 4
Q ss_pred ChHHHHHHHHHHHHhhhcCCCceEEEEcCCccCCcc-HHHHHHHHHhCCC
Q 015713 193 GTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHIDTKA 241 (402)
Q Consensus 193 Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~d-i~~~l~~h~~~~a 241 (402)
|-+.|.-.++... ..+.++++++|.....+ +..+++...+.+.
T Consensus 70 G~~~a~N~g~~~A------~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~ 113 (299)
T cd02510 70 GLIRARIAGARAA------TGDVLVFLDSHCEVNVGWLEPLLARIAENRK 113 (299)
T ss_pred CHHHHHHHHHHHc------cCCEEEEEeCCcccCccHHHHHHHHHHhCCC
Confidence 7888887776553 46999999999988776 5777777665544
No 127
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=72.96 E-value=71 Score=28.67 Aligned_cols=107 Identities=10% Similarity=0.098 Sum_probs=61.4
Q ss_pred eecCCcchHHHHHHHHhHhCC---CCeEEEEccCCchhHHHHHHhhccCCCCcccCCCcEEEEecccCCCcCCccccCCh
Q 015713 118 VPIGGNYRLIDIPMSNCINSG---FNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGT 194 (402)
Q Consensus 118 vpIgG~~pLId~~i~~l~~~G---I~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~~~~V~vl~~~q~~~~~g~~~~~Gt 194 (402)
+|.-+....|...++.+.+.- --+|+||-........+.+. .|. .. .. .+.++.... ..|-
T Consensus 3 Ip~yn~~~~l~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~~~~~-~~~-~~---~~--~i~~~~~~~---------n~G~ 66 (224)
T cd06442 3 IPTYNERENIPELIERLDAALKGIDYEIIVVDDNSPDGTAEIVR-ELA-KE---YP--RVRLIVRPG---------KRGL 66 (224)
T ss_pred EeccchhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCCChHHHHH-HHH-Hh---CC--ceEEEecCC---------CCCh
Confidence 455555456777777776632 34666665433232222222 220 00 01 244544322 2488
Q ss_pred HHHHHHHHHHHHhhhcCCCceEEEEcCCccCCcc-HHHHHHHHHhCCCcEEEE
Q 015713 195 ADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHIDTKADITVS 246 (402)
Q Consensus 195 a~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~d-i~~~l~~h~~~~aditi~ 246 (402)
+.|+..++... ..+.++++.+|.....+ +..+++.....+.++...
T Consensus 67 ~~a~n~g~~~a------~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g 113 (224)
T cd06442 67 GSAYIEGFKAA------RGDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIG 113 (224)
T ss_pred HHHHHHHHHHc------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 88888887654 35889999999988766 577777655666665444
No 128
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=68.26 E-value=81 Score=27.42 Aligned_cols=49 Identities=16% Similarity=0.112 Sum_probs=34.6
Q ss_pred CChHHHHHHHHHHHHhhhcCCCceEEEEcCCccCCcc-HHHHHHHHHhCCCcEEEEE
Q 015713 192 QGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHIDTKADITVSC 247 (402)
Q Consensus 192 ~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~d-i~~~l~~h~~~~aditi~~ 247 (402)
.|.+.|+..++... ..+.++++.+|..+..+ +..+++. .+.+.++.+..
T Consensus 66 ~G~~~a~n~g~~~a------~~d~i~~~D~D~~~~~~~l~~l~~~-~~~~~~~v~g~ 115 (181)
T cd04187 66 FGQQAALLAGLDHA------RGDAVITMDADLQDPPELIPEMLAK-WEEGYDVVYGV 115 (181)
T ss_pred CCcHHHHHHHHHhc------CCCEEEEEeCCCCCCHHHHHHHHHH-HhCCCcEEEEE
Confidence 47888888876554 35899999999988776 5666665 45556654433
No 129
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=67.89 E-value=79 Score=32.67 Aligned_cols=99 Identities=15% Similarity=0.100 Sum_probs=55.7
Q ss_pred eecCCcchHHHHHHHHhHhCCC--CeEEEEccCCchhHHHHHHhhccCCCCcccCCCcEEEEecccCCCcCCccccCChH
Q 015713 118 VPIGGNYRLIDIPMSNCINSGF--NKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTA 195 (402)
Q Consensus 118 vpIgG~~pLId~~i~~l~~~GI--~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~~~~V~vl~~~q~~~~~g~~~~~Gta 195 (402)
+|.-|...-|...++.+.+..- -+|+|+.....+...+.+.+.. . +.. .+.++...+. +|-+
T Consensus 81 IP~yNE~~~i~~~l~sll~q~yp~~eIivVdDgs~D~t~~~~~~~~--~---~~~--~v~vv~~~~n---------~Gka 144 (444)
T PRK14583 81 VPCFNEGLNARETIHAALAQTYTNIEVIAINDGSSDDTAQVLDALL--A---EDP--RLRVIHLAHN---------QGKA 144 (444)
T ss_pred EEeCCCHHHHHHHHHHHHcCCCCCeEEEEEECCCCccHHHHHHHHH--H---hCC--CEEEEEeCCC---------CCHH
Confidence 3444443456666777666422 3677776543332222222110 0 011 2555543222 4788
Q ss_pred HHHHHHHHHHHhhhcCCCceEEEEcCCccCCcc-HHHHHHHHHh
Q 015713 196 DAVRQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHID 238 (402)
Q Consensus 196 ~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~d-i~~~l~~h~~ 238 (402)
+|+..+...- ..|.++++.+|.+.+.| +..+++.+.+
T Consensus 145 ~AlN~gl~~a------~~d~iv~lDAD~~~~~d~L~~lv~~~~~ 182 (444)
T PRK14583 145 IALRMGAAAA------RSEYLVCIDGDALLDKNAVPYLVAPLIA 182 (444)
T ss_pred HHHHHHHHhC------CCCEEEEECCCCCcCHHHHHHHHHHHHh
Confidence 8888876442 46999999999999887 4666665544
No 130
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=66.65 E-value=90 Score=27.37 Aligned_cols=107 Identities=13% Similarity=0.155 Sum_probs=60.3
Q ss_pred ceecCCcchHHHHHHHHhHhCCC----CeEEEEccCCchhHHHHHHhhccCCCCcccCCCcEEEEecccCCCcCCccccC
Q 015713 117 AVPIGGNYRLIDIPMSNCINSGF----NKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQ 192 (402)
Q Consensus 117 LvpIgG~~pLId~~i~~l~~~GI----~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~~~~V~vl~~~q~~~~~g~~~~~ 192 (402)
++|.-+....|...++.+..... -+|+|+.......-.+.+ +.+ +.. +.+.. ... ..
T Consensus 2 vIp~~ne~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~D~t~~~~-~~~--------~~~-~~~~~-~~~--------~~ 62 (183)
T cd06438 2 LIPAHNEEAVIGNTVRSLKAQDYPRELYRIFVVADNCTDDTAQVA-RAA--------GAT-VLERH-DPE--------RR 62 (183)
T ss_pred EEeccchHHHHHHHHHHHHhcCCCCcccEEEEEeCCCCchHHHHH-HHc--------CCe-EEEeC-CCC--------CC
Confidence 45666655677778888876432 356666554433332322 222 111 22211 111 14
Q ss_pred ChHHHHHHHHHHHHhhhcCCCceEEEEcCCccCCccH-HHHHHHHHhCCCcEE
Q 015713 193 GTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDY-TEFLQKHIDTKADIT 244 (402)
Q Consensus 193 Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~di-~~~l~~h~~~~adit 244 (402)
|-+.++..++..... .....+.++++.+|.....+. ..+++.+. .+.++.
T Consensus 63 gk~~aln~g~~~a~~-~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~-~~~~~v 113 (183)
T cd06438 63 GKGYALDFGFRHLLN-LADDPDAVVVFDADNLVDPNALEELNARFA-AGARVV 113 (183)
T ss_pred CHHHHHHHHHHHHHh-cCCCCCEEEEEcCCCCCChhHHHHHHHHHh-hCCCee
Confidence 788888888766530 012468899999999998875 56666554 445543
No 131
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=66.51 E-value=97 Score=27.69 Aligned_cols=107 Identities=7% Similarity=0.028 Sum_probs=60.2
Q ss_pred ceecCCcchHHHHHHHHhHhCC--C--CeEEEEccCCchhHHHHHHhhccCCCCcccCCCcEEEEecccCCCcCCccccC
Q 015713 117 AVPIGGNYRLIDIPMSNCINSG--F--NKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQ 192 (402)
Q Consensus 117 LvpIgG~~pLId~~i~~l~~~G--I--~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~~~~V~vl~~~q~~~~~g~~~~~ 192 (402)
++|.-|....|..+++.+...- . -+|+||-........+.+.... . .....+.++.... .+ ..
T Consensus 2 iip~~n~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~--~----~~~~~v~~~~~~~-~~------~~ 68 (229)
T cd04192 2 VIAARNEAENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILEFAA--A----KPNFQLKILNNSR-VS------IS 68 (229)
T ss_pred EEEecCcHHHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHHHHH--h----CCCcceEEeeccC-cc------cc
Confidence 3566666567888888876642 2 3677776543333333332010 0 0111255554332 10 13
Q ss_pred ChHHHHHHHHHHHHhhhcCCCceEEEEcCCccCCcc-HHHHHHHHHhCCCc
Q 015713 193 GTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHIDTKAD 242 (402)
Q Consensus 193 Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~d-i~~~l~~h~~~~ad 242 (402)
|-+.++..++... ..+.++++.+|.+...+ +.++++.+.+.+..
T Consensus 69 g~~~a~n~g~~~~------~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~ 113 (229)
T cd04192 69 GKKNALTTAIKAA------KGDWIVTTDADCVVPSNWLLTFVAFIQKEQIG 113 (229)
T ss_pred hhHHHHHHHHHHh------cCCEEEEECCCcccCHHHHHHHHHHhhcCCCc
Confidence 6667776665433 46899999999988877 46777766555443
No 132
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=66.21 E-value=1.1e+02 Score=28.15 Aligned_cols=100 Identities=16% Similarity=0.232 Sum_probs=57.6
Q ss_pred ceecCCcchHHHHHHHHhHhCCC----CeEEEEccCCchhHHHHHHhhccCCCCcccCCCcEEEEecccCCCcCCccccC
Q 015713 117 AVPIGGNYRLIDIPMSNCINSGF----NKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQ 192 (402)
Q Consensus 117 LvpIgG~~pLId~~i~~l~~~GI----~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~~~~V~vl~~~q~~~~~g~~~~~ 192 (402)
++|.-|....|...++.+..... -+|+|+.........+.+ +.+ ... .+.++..... .
T Consensus 34 vip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~-~~~--~~~------~v~~i~~~~~---------~ 95 (251)
T cd06439 34 IIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIA-REY--ADK------GVKLLRFPER---------R 95 (251)
T ss_pred EEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHH-HHH--hhC------cEEEEEcCCC---------C
Confidence 44555543456666666655322 257777654443333333 333 110 2555543221 4
Q ss_pred ChHHHHHHHHHHHHhhhcCCCceEEEEcCCccCCcc-HHHHHHHHHhCC
Q 015713 193 GTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHIDTK 240 (402)
Q Consensus 193 Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~d-i~~~l~~h~~~~ 240 (402)
|-+.++..++... ..+.++++.+|.+...+ +.++++...+.+
T Consensus 96 g~~~a~n~gi~~a------~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~ 138 (251)
T cd06439 96 GKAAALNRALALA------TGEIVVFTDANALLDPDALRLLVRHFADPS 138 (251)
T ss_pred ChHHHHHHHHHHc------CCCEEEEEccccCcCHHHHHHHHHHhcCCC
Confidence 7888888887665 35899999999988877 566776654333
No 133
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=66.05 E-value=94 Score=27.36 Aligned_cols=99 Identities=11% Similarity=0.139 Sum_probs=57.4
Q ss_pred ceecCCcc--hHHHHHHHHhHhCC--CCeEEEEccCC-chhHHHHHHhhccCCCCcccCCCcEEEEecccCCCcCCcccc
Q 015713 117 AVPIGGNY--RLIDIPMSNCINSG--FNKIFIMTQFN-SFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWF 191 (402)
Q Consensus 117 LvpIgG~~--pLId~~i~~l~~~G--I~~IiVv~~~~-~~~i~~~l~~~y~~~~g~~~~~~~V~vl~~~q~~~~~g~~~~ 191 (402)
++|+-+.. ..|..+++.+.+.. -.+|+||-... .....+.+ +.| .. +++ +.++...+.
T Consensus 3 iip~~n~~~~~~l~~~l~Sl~~q~~~~~eiiivdd~ss~d~t~~~~-~~~-~~---~~~---i~~i~~~~n--------- 65 (201)
T cd04195 3 LMSVYIKEKPEFLREALESILKQTLPPDEVVLVKDGPVTQSLNEVL-EEF-KR---KLP---LKVVPLEKN--------- 65 (201)
T ss_pred EEEccccchHHHHHHHHHHHHhcCCCCcEEEEEECCCCchhHHHHH-HHH-Hh---cCC---eEEEEcCcc---------
Confidence 35665542 27888888888753 35666665433 22333222 222 11 111 455433221
Q ss_pred CChHHHHHHHHHHHHhhhcCCCceEEEEcCCccCCcc-HHHHHHHHHh
Q 015713 192 QGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHID 238 (402)
Q Consensus 192 ~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~d-i~~~l~~h~~ 238 (402)
.|.+.+...++..- ..+.++++.+|.+...+ +..+++...+
T Consensus 66 ~G~~~a~N~g~~~a------~gd~i~~lD~Dd~~~~~~l~~~~~~~~~ 107 (201)
T cd04195 66 RGLGKALNEGLKHC------TYDWVARMDTDDISLPDRFEKQLDFIEK 107 (201)
T ss_pred ccHHHHHHHHHHhc------CCCEEEEeCCccccCcHHHHHHHHHHHh
Confidence 47888887776543 46889999999988776 4666666543
No 134
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=64.20 E-value=1e+02 Score=27.10 Aligned_cols=104 Identities=15% Similarity=0.202 Sum_probs=57.4
Q ss_pred eecCCcc-hHHHHHHHHhHhCCCC--eEEEEccCC-chhHHHHHHhhccCCCCcccCCCcEEEEecccCCCcCCccccCC
Q 015713 118 VPIGGNY-RLIDIPMSNCINSGFN--KIFIMTQFN-SFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQG 193 (402)
Q Consensus 118 vpIgG~~-pLId~~i~~l~~~GI~--~IiVv~~~~-~~~i~~~l~~~y~~~~g~~~~~~~V~vl~~~q~~~~~g~~~~~G 193 (402)
+|.-+.. ..|..+++.+.+.-.. +|+|+-... .......+. .| ..+ ...+.++..... .|
T Consensus 7 i~~~n~~~~~l~~~l~sl~~q~~~~~eiivvd~gs~d~~~~~~~~-~~-~~~-----~~~~~~~~~~~~---------~g 70 (202)
T cd04184 7 MPVYNTPEKYLREAIESVRAQTYPNWELCIADDASTDPEVKRVLK-KY-AAQ-----DPRIKVVFREEN---------GG 70 (202)
T ss_pred EecccCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCChHHHHHHH-HH-Hhc-----CCCEEEEEcccC---------CC
Confidence 4555554 5567777777664332 666664432 223333332 22 010 012455432221 47
Q ss_pred hHHHHHHHHHHHHhhhcCCCceEEEEcCCccCCcc-HHHHHHHH-HhCCCcE
Q 015713 194 TADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKH-IDTKADI 243 (402)
Q Consensus 194 ta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~d-i~~~l~~h-~~~~adi 243 (402)
-+.++..++... ..+.++++..|.....+ +..+++.+ ...+.++
T Consensus 71 ~~~a~n~g~~~a------~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~ 116 (202)
T cd04184 71 ISAATNSALELA------TGEFVALLDHDDELAPHALYEVVKALNEHPDADL 116 (202)
T ss_pred HHHHHHHHHHhh------cCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCE
Confidence 788887776554 35889999999988877 56777766 3344443
No 135
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=63.35 E-value=99 Score=26.72 Aligned_cols=101 Identities=9% Similarity=0.137 Sum_probs=58.2
Q ss_pred eecCCcchHHHHHHHHhHhCCCC--eEEEEccCCchhHHHHHHhhccCCCCcccCCCcEEEEecccCCCcCCccccCChH
Q 015713 118 VPIGGNYRLIDIPMSNCINSGFN--KIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTA 195 (402)
Q Consensus 118 vpIgG~~pLId~~i~~l~~~GI~--~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~~~~V~vl~~~q~~~~~g~~~~~Gta 195 (402)
+|.-+....|...++.+.+.... +|+|+-+.......+.+. .+ .. ..+.+... +. .|-+
T Consensus 4 i~~~n~~~~l~~~l~sl~~q~~~~~evivvDd~s~d~~~~~~~-~~--~~------~~~~~~~~-~~---------~g~~ 64 (202)
T cd06433 4 TPTYNQAETLEETIDSVLSQTYPNIEYIVIDGGSTDGTVDIIK-KY--ED------KITYWISE-PD---------KGIY 64 (202)
T ss_pred EeccchHHHHHHHHHHHHhCCCCCceEEEEeCCCCccHHHHHH-Hh--Hh------hcEEEEec-CC---------cCHH
Confidence 45555546788888888775544 676664433333334443 22 11 11333322 11 3788
Q ss_pred HHHHHHHHHHHhhhcCCCceEEEEcCCccCCcc-HHHHHHHHHh-CCCcE
Q 015713 196 DAVRQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHID-TKADI 243 (402)
Q Consensus 196 ~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~d-i~~~l~~h~~-~~adi 243 (402)
.++..++... ..+.++++.+|..+..+ +..++..... .+.++
T Consensus 65 ~a~n~~~~~a------~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~ 108 (202)
T cd06433 65 DAMNKGIALA------TGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDV 108 (202)
T ss_pred HHHHHHHHHc------CCCEEEEeCCCcccCchHHHHHHHHHHhCCCccE
Confidence 8888877554 35899999999977655 6677644433 34444
No 136
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=60.23 E-value=1.9e+02 Score=29.14 Aligned_cols=106 Identities=17% Similarity=0.265 Sum_probs=58.0
Q ss_pred hHHHHHHHHhHhCCC---CeEEEEccCCch---hHHHHHHhhccCCCCcccCCCcEEEEecccCCCcCCccccCChHHHH
Q 015713 125 RLIDIPMSNCINSGF---NKIFIMTQFNSF---SLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAV 198 (402)
Q Consensus 125 pLId~~i~~l~~~GI---~~IiVv~~~~~~---~i~~~l~~~y~~~~g~~~~~~~V~vl~~~q~~~~~g~~~~~Gta~Al 198 (402)
..|...++.+.+... -+|+||-+...+ ++.+.+...+ . ....+.++.....+ .| ..|-+.|+
T Consensus 53 ~~L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~--~-----~~~~i~vi~~~~~~--~g---~~Gk~~A~ 120 (384)
T TIGR03469 53 DVIGECVTSLLEQDYPGKLHVILVDDHSTDGTADIARAAARAY--G-----RGDRLTVVSGQPLP--PG---WSGKLWAV 120 (384)
T ss_pred hHHHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHHHHHHHHhc--C-----CCCcEEEecCCCCC--CC---CcchHHHH
Confidence 455666666665422 367777654332 2333332222 0 01125665432211 11 23667788
Q ss_pred HHHHHHHHhhhcCCCceEEEEcCCccCCcc-HHHHHHHHHhCCCcE
Q 015713 199 RQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHIDTKADI 243 (402)
Q Consensus 199 ~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~d-i~~~l~~h~~~~adi 243 (402)
.++.....+. ....|.++++.+|.....+ +.++++...+.+.++
T Consensus 121 n~g~~~A~~~-~~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~ 165 (384)
T TIGR03469 121 SQGIAAARTL-APPADYLLLTDADIAHGPDNLARLVARARAEGLDL 165 (384)
T ss_pred HHHHHHHhcc-CCCCCEEEEECCCCCCChhHHHHHHHHHHhCCCCE
Confidence 7776554310 0116889999999988776 578887776666554
No 137
>PRK11204 N-glycosyltransferase; Provisional
Probab=58.92 E-value=1.8e+02 Score=29.47 Aligned_cols=92 Identities=14% Similarity=0.164 Sum_probs=52.6
Q ss_pred hHHHHHHHHhHhCC--CCeEEEEccCCchhHHHHHHhhccCCCCcccCCCcEEEEecccCCCcCCccccCChHHHHHHHH
Q 015713 125 RLIDIPMSNCINSG--FNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFI 202 (402)
Q Consensus 125 pLId~~i~~l~~~G--I~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~~~~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~ 202 (402)
..|...++.+.+.. --+|+|+-....+...+.+. .+. . ++. .+.++...+. .|-++++..++
T Consensus 67 ~~i~~~l~sl~~q~yp~~eiiVvdD~s~d~t~~~l~-~~~-~---~~~--~v~~i~~~~n---------~Gka~aln~g~ 130 (420)
T PRK11204 67 ENVEETISHLLALRYPNYEVIAINDGSSDNTGEILD-RLA-A---QIP--RLRVIHLAEN---------QGKANALNTGA 130 (420)
T ss_pred HHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHH-HHH-H---hCC--cEEEEEcCCC---------CCHHHHHHHHH
Confidence 44566666666543 23677776543333222222 110 0 011 2555542221 37888888887
Q ss_pred HHHHhhhcCCCceEEEEcCCccCCcc-HHHHHHHHHh
Q 015713 203 WVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHID 238 (402)
Q Consensus 203 ~~l~~~~~~~~e~~Lvl~gD~l~~~d-i~~~l~~h~~ 238 (402)
... ..|.++++.+|.+...| +.++++...+
T Consensus 131 ~~a------~~d~i~~lDaD~~~~~d~L~~l~~~~~~ 161 (420)
T PRK11204 131 AAA------RSEYLVCIDGDALLDPDAAAYMVEHFLH 161 (420)
T ss_pred HHc------CCCEEEEECCCCCCChhHHHHHHHHHHh
Confidence 553 46899999999988877 4667766644
No 138
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=58.89 E-value=49 Score=29.92 Aligned_cols=107 Identities=17% Similarity=0.214 Sum_probs=53.7
Q ss_pred ceecCCcchHHHHHHHHhHhC--CCCeEEEEccCCchhH---HHHHHhhccCCCCcccCCCcEEEEecccCCCcCCcccc
Q 015713 117 AVPIGGNYRLIDIPMSNCINS--GFNKIFIMTQFNSFSL---NRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWF 191 (402)
Q Consensus 117 LvpIgG~~pLId~~i~~l~~~--GI~~IiVv~~~~~~~i---~~~l~~~y~~~~g~~~~~~~V~vl~~~q~~~~~g~~~~ 191 (402)
++|.-+..+.|...++.+... .--+|+|+.....+.. .+.+...+ +...+.++......+ .
T Consensus 6 vip~~~~~~~l~~~l~sl~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~--------~~~~v~vi~~~~~~g------~ 71 (228)
T PF13641_consen 6 VIPAYNEDDVLRRCLESLLAQDYPRLEVVVVDDGSDDETAEILRALAARY--------PRVRVRVIRRPRNPG------P 71 (228)
T ss_dssp E--BSS-HHHHHHHHHHHTTSHHHTEEEEEEEE-SSS-GCTTHHHHHHTT--------GG-GEEEEE----HH------H
T ss_pred EEEecCCHHHHHHHHHHHHcCCCCCeEEEEEECCCChHHHHHHHHHHHHc--------CCCceEEeecCCCCC------c
Confidence 456666656777788888763 2246666665433332 33333333 222366665433211 1
Q ss_pred CChHHHHHHHHHHHHhhhcCCCceEEEEcCCccCCccH-HHHHHHHHhCCCcE
Q 015713 192 QGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDY-TEFLQKHIDTKADI 243 (402)
Q Consensus 192 ~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~di-~~~l~~h~~~~adi 243 (402)
.|.+.++..++...+ .+.++++..|.+...+. ..+++.+.+.+..+
T Consensus 72 ~~k~~a~n~~~~~~~------~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~ 118 (228)
T PF13641_consen 72 GGKARALNEALAAAR------GDYILFLDDDTVLDPDWLERLLAAFADPGVGA 118 (228)
T ss_dssp HHHHHHHHHHHHH---------SEEEEE-SSEEE-CHHHHHHHHHHHBSS--E
T ss_pred chHHHHHHHHHHhcC------CCEEEEECCCcEECHHHHHHHHHHHHhCCCCe
Confidence 145677777766543 68999999999888774 66777664444443
No 139
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=58.31 E-value=1.3e+02 Score=27.35 Aligned_cols=99 Identities=10% Similarity=0.126 Sum_probs=56.9
Q ss_pred ceecCCcc-hHHHHHHHHhHhCCC--CeEEEEccCCc-hhHHH---HHHhhccCCCCcccCCCcEEEEecccCCCcCCcc
Q 015713 117 AVPIGGNY-RLIDIPMSNCINSGF--NKIFIMTQFNS-FSLNR---HLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKK 189 (402)
Q Consensus 117 LvpIgG~~-pLId~~i~~l~~~GI--~~IiVv~~~~~-~~i~~---~l~~~y~~~~g~~~~~~~V~vl~~~q~~~~~g~~ 189 (402)
++|.-+.. .+|...++.+..... -+|+||-+... ..... .+.+.+ +. .+.++...+.
T Consensus 3 iip~~ne~~~~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~~--------~~-~i~~i~~~~~------- 66 (236)
T cd06435 3 HVPCYEEPPEMVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPVEAHCAQL--------GE-RFRFFHVEPL------- 66 (236)
T ss_pred eEeeCCCcHHHHHHHHHHHHhCCCCCcEEEEEeCCCCchhHHHHHHHHHHHh--------CC-cEEEEEcCCC-------
Confidence 35666664 378888888887643 36766665332 22211 222221 11 1444443322
Q ss_pred ccCC-hHHHHHHHHHHHHhhhcCCCceEEEEcCCccCCcc-HHHHHHHHH
Q 015713 190 WFQG-TADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHI 237 (402)
Q Consensus 190 ~~~G-ta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~d-i~~~l~~h~ 237 (402)
.| .++++..++.... ...+.++++..|.+...+ +.+++....
T Consensus 67 --~G~~~~a~n~g~~~a~----~~~d~i~~lD~D~~~~~~~l~~l~~~~~ 110 (236)
T cd06435 67 --PGAKAGALNYALERTA----PDAEIIAVIDADYQVEPDWLKRLVPIFD 110 (236)
T ss_pred --CCCchHHHHHHHHhcC----CCCCEEEEEcCCCCcCHHHHHHHHHHhc
Confidence 14 4777877765542 125889999999988877 567776654
No 140
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=54.48 E-value=1.9e+02 Score=29.03 Aligned_cols=104 Identities=12% Similarity=0.189 Sum_probs=53.5
Q ss_pred ceecCCcchHHHHHHHHhHhCCC--CeEEEEccCCch---hHHHHHHhhccCCCCcccCCCcEEEEecccCCCcCCcccc
Q 015713 117 AVPIGGNYRLIDIPMSNCINSGF--NKIFIMTQFNSF---SLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWF 191 (402)
Q Consensus 117 LvpIgG~~pLId~~i~~l~~~GI--~~IiVv~~~~~~---~i~~~l~~~y~~~~g~~~~~~~V~vl~~~q~~~~~g~~~~ 191 (402)
++|+-|..+-|...++.+.+..- -+|+|+...... .+-+.+...| +.-.|+++...+..|.
T Consensus 46 iiP~~nee~~l~~~L~Sl~~q~Yp~~EIivvdd~s~D~t~~iv~~~~~~~--------p~~~i~~v~~~~~~G~------ 111 (373)
T TIGR03472 46 LKPLHGDEPELYENLASFCRQDYPGFQMLFGVQDPDDPALAVVRRLRADF--------PDADIDLVIDARRHGP------ 111 (373)
T ss_pred EEECCCCChhHHHHHHHHHhcCCCCeEEEEEeCCCCCcHHHHHHHHHHhC--------CCCceEEEECCCCCCC------
Confidence 34455544566677777766432 467666543322 2222233332 2212555543332211
Q ss_pred CChHHHHHHHHHHHHhhhcCCCceEEEEcCCccCCccH-HHHHHHHHhCC
Q 015713 192 QGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDY-TEFLQKHIDTK 240 (402)
Q Consensus 192 ~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~di-~~~l~~h~~~~ 240 (402)
.+-..++.++ ++. ...|.++++.+|.....++ ..+++...+.+
T Consensus 112 ~~K~~~l~~~---~~~---a~ge~i~~~DaD~~~~p~~L~~lv~~~~~~~ 155 (373)
T TIGR03472 112 NRKVSNLINM---LPH---ARHDILVIADSDISVGPDYLRQVVAPLADPD 155 (373)
T ss_pred ChHHHHHHHH---HHh---ccCCEEEEECCCCCcChhHHHHHHHHhcCCC
Confidence 1233444443 232 2468999999999888885 56665554333
No 141
>PF01983 CofC: Guanylyl transferase CofC like; InterPro: IPR002835 Coenzyme F 420 is a hydride carrier cofactor functioning in methanogenesis. One step in the biosynthesis of coenzyme F 420 involves the coupling of 2-phospho- l-lactate (LP) to 7,8-didemethyl-8-hydroxy-5-deazaflavin, the F 420 chromophore. This condensation requires an initial activation of 2-phospho- l-lactate through a pyrophosphate linkage to GMP. MJ0887 from Methanocaldococcus jannaschii has domain similarity with other known nucleotidyl transferases and was demonstrated to catalyse the formation of lactyl-2-diphospho-5'-guanosine from LP and GTP, which is the third step in the biosynthesis of coenzyme F 420 []. ; GO: 0016779 nucleotidyltransferase activity; PDB: 2I5E_B.
Probab=54.10 E-value=21 Score=33.63 Aligned_cols=104 Identities=19% Similarity=0.251 Sum_probs=49.3
Q ss_pred eeEEEEcCCCC---CcCCCCCCCCCccceecCCc----chHHHHHHHHhHhCCCCeEEEEccCCchhHHHHHHhhccCCC
Q 015713 93 VAAIILGGGAG---TRLFPLTNRRAKPAVPIGGN----YRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGN 165 (402)
Q Consensus 93 m~AIILAaG~G---tRL~PlT~~~PKpLvpIgG~----~pLId~~i~~l~~~GI~~IiVv~~~~~~~i~~~l~~~y~~~~ 165 (402)
|++||+--..+ |||.|. ++-..+ .-|+..++..+.. ++ |+||+.. +.+.+. ...
T Consensus 1 m~~VIPvK~~~~aKSRLs~~--------L~~~eR~~La~aMl~Dvl~al~~--v~-v~vVs~d--~~v~~~-a~~----- 61 (217)
T PF01983_consen 1 MRAVIPVKPLARAKSRLSPV--------LSPEEREALALAMLRDVLAALRA--VD-VVVVSRD--PEVAAL-ARA----- 61 (217)
T ss_dssp -EEEEE---TT-TTGGGTTT--------S-HHHHHHHHHHHHHHHHHHHHH---S-EEEEES----S-TTT-TT------
T ss_pred CeEEEEcCCCCccccccCcc--------CCHHHHHHHHHHHHHHHHHHHHh--cC-eEEeccc--hhhhhh-hhh-----
Confidence 67788765543 788543 111111 2588899998877 66 7777742 222111 110
Q ss_pred CcccCCCcEEEEecccCCCcCCccccCChHHHHHHHHHHHHhhhcCCCceEEEEcCCc--cCCccHHHHHHHH
Q 015713 166 GVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH--LYRMDYTEFLQKH 236 (402)
Q Consensus 166 g~~~~~~~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~--l~~~di~~~l~~h 236 (402)
.+| ++++.+.. .|--.||.++.... ..++++|+.+|. +...++..++...
T Consensus 62 --~~g---~~vl~d~~----------~gLN~Al~~a~~~~------~~~~vlvl~aDLPll~~~dl~~~l~~~ 113 (217)
T PF01983_consen 62 --RLG---AEVLPDPG----------RGLNAALNAALAAA------GDDPVLVLPADLPLLTPEDLDALLAAA 113 (217)
T ss_dssp ----S---SEEEE-------------S-HHHHHHHHHH-H--------S-EEEE-S--TT--HHHHHHHCT-S
T ss_pred --ccC---CeEecCCC----------CCHHHHHHHHHhcc------CCCceEEeecCCccCCHHHHHHHHhcc
Confidence 122 56665431 26778888873222 458999999999 4456788887654
No 142
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=54.05 E-value=1.6e+02 Score=26.20 Aligned_cols=95 Identities=11% Similarity=0.016 Sum_probs=53.8
Q ss_pred ceecCCcchHHHHHHHHhHhCC--CCeEEEEccCCchhHHHHHHhhccCCCCcccCCCcEEEEecccCCCcCCccccCCh
Q 015713 117 AVPIGGNYRLIDIPMSNCINSG--FNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGT 194 (402)
Q Consensus 117 LvpIgG~~pLId~~i~~l~~~G--I~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~~~~V~vl~~~q~~~~~g~~~~~Gt 194 (402)
++|+-+....|...++.+.+.- .-+|+|+-+.......+.+.+ . .+.++... .|-
T Consensus 4 ii~~~n~~~~l~~~l~sl~~q~~~~~evivvdd~s~d~~~~~~~~-~-----------~~~~~~~~-----------~g~ 60 (221)
T cd02522 4 IIPTLNEAENLPRLLASLRRLNPLPLEIIVVDGGSTDGTVAIARS-A-----------GVVVISSP-----------KGR 60 (221)
T ss_pred EEEccCcHHHHHHHHHHHHhccCCCcEEEEEeCCCCccHHHHHhc-C-----------CeEEEeCC-----------cCH
Confidence 3566665467778888877642 346766654333333333321 1 13343321 256
Q ss_pred HHHHHHHHHHHHhhhcCCCceEEEEcCCccCCccH-HHHHHHHHhCC
Q 015713 195 ADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDY-TEFLQKHIDTK 240 (402)
Q Consensus 195 a~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~di-~~~l~~h~~~~ 240 (402)
+.+...++... ..+.++++..|.....+. .+++......+
T Consensus 61 ~~a~n~g~~~a------~~~~i~~~D~D~~~~~~~l~~l~~~~~~~~ 101 (221)
T cd02522 61 ARQMNAGAAAA------RGDWLLFLHADTRLPPDWDAAIIETLRADG 101 (221)
T ss_pred HHHHHHHHHhc------cCCEEEEEcCCCCCChhHHHHHHHHhhcCC
Confidence 66666665443 368999999999887764 55555444443
No 143
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=54.01 E-value=2e+02 Score=27.22 Aligned_cols=90 Identities=13% Similarity=0.052 Sum_probs=54.2
Q ss_pred HHHHHHHHhHhCCCCeEEEEccCC--chhHHHHHHhhccCCCCcccCCCcEEEEecccCCCcCCccccCChHHHHHHHHH
Q 015713 126 LIDIPMSNCINSGFNKIFIMTQFN--SFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIW 203 (402)
Q Consensus 126 LId~~i~~l~~~GI~~IiVv~~~~--~~~i~~~l~~~y~~~~g~~~~~~~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~ 203 (402)
.|...++.+.+. ..+|+||=+.. .+.+.+.+. .+ ..|.++..... .|-|.|...++.
T Consensus 9 ~l~~~l~sl~~q-~~~iiVVDN~S~~~~~~~~~~~-~~----------~~i~~i~~~~N---------~G~a~a~N~Gi~ 67 (281)
T TIGR01556 9 HLGELITSLPKQ-VDRIIAVDNSPHSDQPLKNARL-RG----------QKIALIHLGDN---------QGIAGAQNQGLD 67 (281)
T ss_pred HHHHHHHHHHhc-CCEEEEEECcCCCcHhHHHHhc-cC----------CCeEEEECCCC---------cchHHHHHHHHH
Confidence 556666666654 46776665542 223332221 11 12666653322 588999988876
Q ss_pred HHHhhhcCCCceEEEEcCCccCCcc-HHHHHHHHHhC
Q 015713 204 VFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHIDT 239 (402)
Q Consensus 204 ~l~~~~~~~~e~~Lvl~gD~l~~~d-i~~~l~~h~~~ 239 (402)
...+ ...+.++++..|.....+ +..+++.....
T Consensus 68 ~a~~---~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~ 101 (281)
T TIGR01556 68 ASFR---RGVQGVLLLDQDSRPGNAFLAAQWKLLSAE 101 (281)
T ss_pred HHHH---CCCCEEEEECCCCCCCHHHHHHHHHHHHhc
Confidence 6532 356899999999988776 45666655444
No 144
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=52.04 E-value=2.9e+02 Score=28.52 Aligned_cols=42 Identities=17% Similarity=0.239 Sum_probs=31.6
Q ss_pred CChHHHHHHHHHHHHhhhcCCCceEEEEcCCccCCcc-HHHHHHHHHhC
Q 015713 192 QGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHIDT 239 (402)
Q Consensus 192 ~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~d-i~~~l~~h~~~ 239 (402)
.|-++|+..++... ..+.++++.+|.+.+.| +.++++...+.
T Consensus 117 ~Gka~AlN~gl~~s------~g~~v~~~DaD~~~~~d~L~~l~~~f~~~ 159 (439)
T TIGR03111 117 QGKAKALNAAIYNS------IGKYIIHIDSDGKLHKDAIKNMVTRFENN 159 (439)
T ss_pred CCHHHHHHHHHHHc------cCCEEEEECCCCCcChHHHHHHHHHHHhC
Confidence 37888988887553 46889999999998877 46777666543
No 145
>PRK10018 putative glycosyl transferase; Provisional
Probab=51.81 E-value=2.3e+02 Score=27.40 Aligned_cols=96 Identities=13% Similarity=0.202 Sum_probs=56.4
Q ss_pred ecCCcchHHHHHHHHhHhCCCC--eEEEEccCCc--hhHHHHHHhhccCCCCcccCCCcEEEEecccCCCcCCccccCCh
Q 015713 119 PIGGNYRLIDIPMSNCINSGFN--KIFIMTQFNS--FSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGT 194 (402)
Q Consensus 119 pIgG~~pLId~~i~~l~~~GI~--~IiVv~~~~~--~~i~~~l~~~y~~~~g~~~~~~~V~vl~~~q~~~~~g~~~~~Gt 194 (402)
|.-+....|..+|+.+.+.-.. +|+||-.... +.+.+++ +.+ +...|.++...+. .|.
T Consensus 12 p~yN~~~~l~~~l~Svl~Qt~~~~EiIVVDDgS~~~~~~~~~~-~~~--------~~~ri~~i~~~~n---------~G~ 73 (279)
T PRK10018 12 PTWNRQQLAIRAIKSVLRQDYSNWEMIIVDDCSTSWEQLQQYV-TAL--------NDPRITYIHNDIN---------SGA 73 (279)
T ss_pred EeCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCCHHHHHHHH-HHc--------CCCCEEEEECCCC---------CCH
Confidence 4445446677788877765433 6666644222 2222322 222 1123666653322 488
Q ss_pred HHHHHHHHHHHHhhhcCCCceEEEEcCCccCCcc-HHHHHHHHHh
Q 015713 195 ADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHID 238 (402)
Q Consensus 195 a~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~d-i~~~l~~h~~ 238 (402)
+.|...++... ..+.++++.+|.+...+ +..+++...+
T Consensus 74 ~~a~N~gi~~a------~g~~I~~lDaDD~~~p~~l~~~~~~~~~ 112 (279)
T PRK10018 74 CAVRNQAIMLA------QGEYITGIDDDDEWTPNRLSVFLAHKQQ 112 (279)
T ss_pred HHHHHHHHHHc------CCCEEEEECCCCCCCccHHHHHHHHHHh
Confidence 88887776553 46899999999988776 5667765443
No 146
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=51.74 E-value=1.8e+02 Score=26.09 Aligned_cols=99 Identities=14% Similarity=0.226 Sum_probs=55.7
Q ss_pred eecCCcc-hHHHHHHHHhHhCCCC----eEEEEccCCchhHHHHHHhhccCCCCcccCCCcEEEEecccCCCcCCccccC
Q 015713 118 VPIGGNY-RLIDIPMSNCINSGFN----KIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQ 192 (402)
Q Consensus 118 vpIgG~~-pLId~~i~~l~~~GI~----~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~~~~V~vl~~~q~~~~~g~~~~~ 192 (402)
+|.-+.. .++...++.+...... +|+|+-........+.+. .+ .. .+ .+.++...... .
T Consensus 7 ip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~-~~--~~--~~---~~~~~~~~~~~--------~ 70 (234)
T cd06421 7 IPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALAA-EL--GV--EY---GYRYLTRPDNR--------H 70 (234)
T ss_pred EecCCCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHHH-Hh--hc--cc---CceEEEeCCCC--------C
Confidence 4555542 3677788888775432 677776655554444443 32 11 11 13333322111 1
Q ss_pred ChHHHHHHHHHHHHhhhcCCCceEEEEcCCccCCccH-HHHHHHHHh
Q 015713 193 GTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDY-TEFLQKHID 238 (402)
Q Consensus 193 Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~di-~~~l~~h~~ 238 (402)
+-++++..++... ..+.++++..|.+.+.+. ..+++...+
T Consensus 71 ~~~~~~n~~~~~a------~~d~i~~lD~D~~~~~~~l~~l~~~~~~ 111 (234)
T cd06421 71 AKAGNLNNALAHT------TGDFVAILDADHVPTPDFLRRTLGYFLD 111 (234)
T ss_pred CcHHHHHHHHHhC------CCCEEEEEccccCcCccHHHHHHHHHhc
Confidence 3456666665433 468999999999888774 566665544
No 147
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=47.72 E-value=2.2e+02 Score=28.69 Aligned_cols=105 Identities=13% Similarity=0.181 Sum_probs=66.6
Q ss_pred ceecCCcch-HHHHHHHHhHhCCCC--eEEEEccCCchhHHHHHHhhccCCCCcccCCCcEEEEecccCCCcCCccccCC
Q 015713 117 AVPIGGNYR-LIDIPMSNCINSGFN--KIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQG 193 (402)
Q Consensus 117 LvpIgG~~p-LId~~i~~l~~~GI~--~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~~~~V~vl~~~q~~~~~g~~~~~G 193 (402)
++|.-|..+ .++..++.+.+.... +|+|+.....+...+.+.+.. .+++ ..+.+....+. ..|
T Consensus 59 iiP~ynE~~~~~~~~l~s~~~~dyp~~evivv~d~~~d~~~~~~~~~~-----~~~~-~~~~~~~~~~~--------~~g 124 (439)
T COG1215 59 IIPAYNEEPEVLEETLESLLSQDYPRYEVIVVDDGSTDETYEILEELG-----AEYG-PNFRVIYPEKK--------NGG 124 (439)
T ss_pred EEecCCCchhhHHHHHHHHHhCCCCCceEEEECCCCChhHHHHHHHHH-----hhcC-cceEEEecccc--------Ccc
Confidence 345555556 889999999887543 788888756665566665432 1111 11333321011 247
Q ss_pred hHHHHHHHHHHHHhhhcCCCceEEEEcCCccCCcc-HHHHHHHHHhCCC
Q 015713 194 TADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHIDTKA 241 (402)
Q Consensus 194 ta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~d-i~~~l~~h~~~~a 241 (402)
-+.++..++... ..|-++++.+|++...| +.+++....+.+.
T Consensus 125 K~~al~~~l~~~------~~d~V~~~DaD~~~~~d~l~~~~~~f~~~~~ 167 (439)
T COG1215 125 KAGALNNGLKRA------KGDVVVILDADTVPEPDALRELVSPFEDPPV 167 (439)
T ss_pred chHHHHHHHhhc------CCCEEEEEcCCCCCChhHHHHHHhhhcCCCe
Confidence 788988887554 36889999999998877 5777777665543
No 148
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=46.68 E-value=2.1e+02 Score=25.35 Aligned_cols=25 Identities=16% Similarity=0.200 Sum_probs=18.9
Q ss_pred CCceEEEEcCCccCCccH-HHHHHHH
Q 015713 212 NVENVLILSGDHLYRMDY-TEFLQKH 236 (402)
Q Consensus 212 ~~e~~Lvl~gD~l~~~di-~~~l~~h 236 (402)
..+.++++.+|...+.+. ..+++..
T Consensus 86 ~~d~i~~~D~D~~~~~~~l~~l~~~~ 111 (196)
T cd02520 86 RYDILVISDSDISVPPDYLRRMVAPL 111 (196)
T ss_pred CCCEEEEECCCceEChhHHHHHHHHh
Confidence 468899999999887764 6666553
No 149
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=46.47 E-value=3.1e+02 Score=27.24 Aligned_cols=51 Identities=16% Similarity=0.232 Sum_probs=35.5
Q ss_pred CChHHHHHHHHHHHHhhhcCCCceEEEEcCCccCCcc-HHHHHHHHH---hCCCcEEEEEE
Q 015713 192 QGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHI---DTKADITVSCV 248 (402)
Q Consensus 192 ~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~d-i~~~l~~h~---~~~aditi~~~ 248 (402)
.|-+.|+..++..- ..+.++++.+|..++.+ +..+++... +.+.++++...
T Consensus 148 ~G~~~A~~~Gi~~a------~gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~GsR 202 (333)
T PTZ00260 148 KGKGGAVRIGMLAS------RGKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVFGSR 202 (333)
T ss_pred CChHHHHHHHHHHc------cCCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEEeec
Confidence 58899998887543 45889999999988754 566665544 35566655543
No 150
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=45.69 E-value=2.1e+02 Score=25.14 Aligned_cols=100 Identities=11% Similarity=0.078 Sum_probs=57.0
Q ss_pred eecCCcchHHHHHHHHhHhCC--CCeEEEEccCCchhHHHHHHhhccCCCCcccCCCcEEEEecccCCCcCCccccCChH
Q 015713 118 VPIGGNYRLIDIPMSNCINSG--FNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTA 195 (402)
Q Consensus 118 vpIgG~~pLId~~i~~l~~~G--I~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~~~~V~vl~~~q~~~~~g~~~~~Gta 195 (402)
+|.-+....|...++.+.+.- -.+|+|+-+.......+.+.+ + .. ..+ +.++..... .|.+
T Consensus 3 I~~~n~~~~l~~~l~sl~~q~~~~~eiiivD~~s~d~t~~~~~~-~--~~--~~~---i~~~~~~~n---------~g~~ 65 (202)
T cd04185 3 VVTYNRLDLLKECLDALLAQTRPPDHIIVIDNASTDGTAEWLTS-L--GD--LDN---IVYLRLPEN---------LGGA 65 (202)
T ss_pred EEeeCCHHHHHHHHHHHHhccCCCceEEEEECCCCcchHHHHHH-h--cC--CCc---eEEEECccc---------cchh
Confidence 344444367888888887743 246777755444444444432 2 11 111 444443222 3667
Q ss_pred HHHHHHHHHHHhhhcCCCceEEEEcCCccCCccH-HHHHHHHH
Q 015713 196 DAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDY-TEFLQKHI 237 (402)
Q Consensus 196 ~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~di-~~~l~~h~ 237 (402)
.++..++.... ....+.++++..|.+...++ ..+++...
T Consensus 66 ~~~n~~~~~a~---~~~~d~v~~ld~D~~~~~~~l~~l~~~~~ 105 (202)
T cd04185 66 GGFYEGVRRAY---ELGYDWIWLMDDDAIPDPDALEKLLAYAD 105 (202)
T ss_pred hHHHHHHHHHh---ccCCCEEEEeCCCCCcChHHHHHHHHHHh
Confidence 77766655442 12468899999999998775 55565554
No 151
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=44.48 E-value=2.2e+02 Score=24.98 Aligned_cols=98 Identities=8% Similarity=0.164 Sum_probs=54.3
Q ss_pred ceecCCcchHHHHHHHHhHhCCC--CeEEEEccCCchhHHHHHHhhccCCCCcccCCCcEEEEecccCCCcCCccccCCh
Q 015713 117 AVPIGGNYRLIDIPMSNCINSGF--NKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGT 194 (402)
Q Consensus 117 LvpIgG~~pLId~~i~~l~~~GI--~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~~~~V~vl~~~q~~~~~g~~~~~Gt 194 (402)
.+|.-+....|...++.+.+... -+|+|+-......-.+.+. .+ .. +++. .+.++...+. .|.
T Consensus 3 vIp~yn~~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~~-~~-~~---~~~~-~~~~~~~~~~---------~G~ 67 (214)
T cd04196 3 LMATYNGEKYLREQLDSILAQTYKNDELIISDDGSTDGTVEIIK-EY-ID---KDPF-IIILIRNGKN---------LGV 67 (214)
T ss_pred EEEecCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHHH-HH-Hh---cCCc-eEEEEeCCCC---------ccH
Confidence 35555654677888888877532 2566665433222222222 22 00 1111 1333332222 377
Q ss_pred HHHHHHHHHHHHhhhcCCCceEEEEcCCccCCcc-HHHHHHH
Q 015713 195 ADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQK 235 (402)
Q Consensus 195 a~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~d-i~~~l~~ 235 (402)
+.++..++.. ...+.++++..|.++..+ +..+++.
T Consensus 68 ~~~~n~g~~~------~~g~~v~~ld~Dd~~~~~~l~~~~~~ 103 (214)
T cd04196 68 ARNFESLLQA------ADGDYVFFCDQDDIWLPDKLERLLKA 103 (214)
T ss_pred HHHHHHHHHh------CCCCEEEEECCCcccChhHHHHHHHH
Confidence 7777766433 246899999999988776 6777766
No 152
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=44.11 E-value=3e+02 Score=31.40 Aligned_cols=96 Identities=15% Similarity=0.188 Sum_probs=54.9
Q ss_pred eecCCcc-hHHHHHHHHhHhCC--CC--eEEEEccCCchhHHHHHHhhccCCCCcccCCCcEEEEecccCCCcCCccccC
Q 015713 118 VPIGGNY-RLIDIPMSNCINSG--FN--KIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQ 192 (402)
Q Consensus 118 vpIgG~~-pLId~~i~~l~~~G--I~--~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~~~~V~vl~~~q~~~~~g~~~~~ 192 (402)
+|.-|.. -++...+..+.+.. -+ +|+|+-.-..+...+. .+.+ + +.++...+.. .
T Consensus 266 IPtYNE~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~t~~l-a~~~--------~---v~yI~R~~n~--------~ 325 (852)
T PRK11498 266 VPTYNEDLNVVKNTIYASLGIDWPKDKLNIWILDDGGREEFRQF-AQEV--------G---VKYIARPTHE--------H 325 (852)
T ss_pred EecCCCcHHHHHHHHHHHHhccCCCCceEEEEEeCCCChHHHHH-HHHC--------C---cEEEEeCCCC--------c
Confidence 3445552 25666676665532 12 5777755444444333 3332 2 4454322111 2
Q ss_pred ChHHHHHHHHHHHHhhhcCCCceEEEEcCCccCCccH-HHHHHHHHhC
Q 015713 193 GTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDY-TEFLQKHIDT 239 (402)
Q Consensus 193 Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~di-~~~l~~h~~~ 239 (402)
|-++++..++... ..|.++++.+|++...|+ ..++..+.+.
T Consensus 326 gKAGnLN~aL~~a------~GEyIavlDAD~ip~pdfL~~~V~~f~~d 367 (852)
T PRK11498 326 AKAGNINNALKYA------KGEFVAIFDCDHVPTRSFLQMTMGWFLKD 367 (852)
T ss_pred chHHHHHHHHHhC------CCCEEEEECCCCCCChHHHHHHHHHHHhC
Confidence 5688888887654 469999999999988775 5566555443
No 153
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=43.37 E-value=3.2e+02 Score=26.81 Aligned_cols=50 Identities=12% Similarity=0.191 Sum_probs=35.1
Q ss_pred CChHHHHHHHHHHHHhhhcCCCceEEEEcCCcc-CCcc-HHHHHHHHH-hCCCcEEEEE
Q 015713 192 QGTADAVRQFIWVFEDAKNKNVENVLILSGDHL-YRMD-YTEFLQKHI-DTKADITVSC 247 (402)
Q Consensus 192 ~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l-~~~d-i~~~l~~h~-~~~aditi~~ 247 (402)
.|-+.|+..++... ..+.++++.+|.. ++.+ +.++++... +.+.+++..+
T Consensus 101 ~Gkg~A~~~g~~~a------~gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~~~~~V~g~ 153 (306)
T PRK13915 101 PGKGEALWRSLAAT------TGDIVVFVDADLINFDPMFVPGLLGPLLTDPGVHLVKAF 153 (306)
T ss_pred CCHHHHHHHHHHhc------CCCEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEEEE
Confidence 47888888776443 4588999999996 6665 677887665 4455665554
No 154
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=42.43 E-value=2.7e+02 Score=25.47 Aligned_cols=91 Identities=15% Similarity=0.154 Sum_probs=53.9
Q ss_pred eecCCcchHHHHHHHHhHhCCCCeEEEEccCCchhHHHHHHhhccCCCCcccCCCcEEEEecccCCCcCCccccCChHHH
Q 015713 118 VPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADA 197 (402)
Q Consensus 118 vpIgG~~pLId~~i~~l~~~GI~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~~~~V~vl~~~q~~~~~g~~~~~Gta~A 197 (402)
+|.-+....|...|+.+... ..+|+|+-........ .+.+.+ + +.++.. . ..|-+.+
T Consensus 6 i~~~Ne~~~l~~~l~sl~~~-~~eiivvD~gStD~t~-~i~~~~--------~---~~v~~~-~---------~~g~~~~ 62 (229)
T cd02511 6 IITKNEERNIERCLESVKWA-VDEIIVVDSGSTDRTV-EIAKEY--------G---AKVYQR-W---------WDGFGAQ 62 (229)
T ss_pred EEeCCcHHHHHHHHHHHhcc-cCEEEEEeCCCCccHH-HHHHHc--------C---CEEEEC-C---------CCChHHH
Confidence 45555546677777777654 3688887664333322 233333 2 344432 1 2477777
Q ss_pred HHHHHHHHHhhhcCCCceEEEEcCCccCCccHH-HHHHHHH
Q 015713 198 VRQFIWVFEDAKNKNVENVLILSGDHLYRMDYT-EFLQKHI 237 (402)
Q Consensus 198 l~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~di~-~~l~~h~ 237 (402)
...++... ..+.++++.+|.+...+.. .+++...
T Consensus 63 ~n~~~~~a------~~d~vl~lDaD~~~~~~~~~~l~~~~~ 97 (229)
T cd02511 63 RNFALELA------TNDWVLSLDADERLTPELADEILALLA 97 (229)
T ss_pred HHHHHHhC------CCCEEEEEeCCcCcCHHHHHHHHHHHh
Confidence 77666543 3579999999999887754 4444433
No 155
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=40.44 E-value=3.7e+02 Score=26.50 Aligned_cols=47 Identities=13% Similarity=0.061 Sum_probs=35.1
Q ss_pred CChHHHHHHHHHHHHhhhcCCCceEEEEcCCccCCcc-HHHHHHHHHhCCCcEEE
Q 015713 192 QGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHIDTKADITV 245 (402)
Q Consensus 192 ~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~d-i~~~l~~h~~~~aditi 245 (402)
.|-+.|+..++... ..+.++++.+|..++.+ +.++++... .+.|++.
T Consensus 76 ~G~~~A~~~G~~~A------~gd~vv~~DaD~q~~p~~i~~l~~~~~-~~~DvV~ 123 (325)
T PRK10714 76 YGQHSAIMAGFSHV------TGDLIITLDADLQNPPEEIPRLVAKAD-EGYDVVG 123 (325)
T ss_pred CCHHHHHHHHHHhC------CCCEEEEECCCCCCCHHHHHHHHHHHH-hhCCEEE
Confidence 48889998886543 46889999999988864 678887764 4567643
No 156
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=39.36 E-value=93 Score=31.89 Aligned_cols=83 Identities=16% Similarity=0.238 Sum_probs=45.6
Q ss_pred HHHHhHhCC-CCeEEEEccCCc-hhHHHHHHhhccCCCCcccCCCcEEEEecccCCCcCCccccCChHHHHHHHHHHHHh
Q 015713 130 PMSNCINSG-FNKIFIMTQFNS-FSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFED 207 (402)
Q Consensus 130 ~i~~l~~~G-I~~IiVv~~~~~-~~i~~~l~~~y~~~~g~~~~~~~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~~ 207 (402)
++..|.+.+ ++-++|+||-+. ....+.+.+.+.+ ...+-...+....|+.+ .-|+..+......+++
T Consensus 22 li~~~~~~~~~~~~vi~TGQH~d~em~~~~le~~~i----~~pdy~L~i~~~~~tl~-------~~t~~~i~~~~~vl~~ 90 (383)
T COG0381 22 LVKALEKDPDFELIVIHTGQHRDYEMLDQVLELFGI----RKPDYDLNIMKPGQTLG-------EITGNIIEGLSKVLEE 90 (383)
T ss_pred HHHHHHhCCCCceEEEEecccccHHHHHHHHHHhCC----CCCCcchhccccCCCHH-------HHHHHHHHHHHHHHHh
Confidence 455666665 999999998544 2344444444422 21221233333333322 1355556555556654
Q ss_pred hhcCCCceEEEEcCCccCCc
Q 015713 208 AKNKNVENVLILSGDHLYRM 227 (402)
Q Consensus 208 ~~~~~~e~~Lvl~gD~l~~~ 227 (402)
...+.+++.||+-.-.
T Consensus 91 ----~kPD~VlVhGDT~t~l 106 (383)
T COG0381 91 ----EKPDLVLVHGDTNTTL 106 (383)
T ss_pred ----hCCCEEEEeCCcchHH
Confidence 4577999999996643
No 157
>PRK10063 putative glycosyl transferase; Provisional
Probab=35.75 E-value=3.8e+02 Score=25.21 Aligned_cols=42 Identities=19% Similarity=0.251 Sum_probs=29.8
Q ss_pred CChHHHHHHHHHHHHhhhcCCCceEEEEcCCccCCccHHHHHHHHHhC
Q 015713 192 QGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDT 239 (402)
Q Consensus 192 ~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~di~~~l~~h~~~ 239 (402)
.|-++|+..++... ..+.++++++|.++..+..+++......
T Consensus 68 ~G~~~A~N~Gi~~a------~g~~v~~ld~DD~~~~~~~~~~~~~~~~ 109 (248)
T PRK10063 68 NGIYDAMNKGIAMA------QGRFALFLNSGDIFHQDAANFVRQLKMQ 109 (248)
T ss_pred CCHHHHHHHHHHHc------CCCEEEEEeCCcccCcCHHHHHHHHHhC
Confidence 38889998887654 3588999998888777755555444333
No 158
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=34.03 E-value=3e+02 Score=26.16 Aligned_cols=96 Identities=14% Similarity=0.163 Sum_probs=50.4
Q ss_pred HHHHHHHhHhCCCCeEEEEccCCchhHHHHHHhhccCCCCcccCCCcEEEEecccCCCcCCccccCChHHHHHHHHHHHH
Q 015713 127 IDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFE 206 (402)
Q Consensus 127 Id~~i~~l~~~GI~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~~~~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~l~ 206 (402)
..=+++.|...|+++|.|++.|.. .+++.+.+.|. ..| ++|+....-.-+.+..--.=+.+++..+...+.
T Consensus 108 ~~A~~~AL~alg~~RIalvTPY~~-~v~~~~~~~l~-~~G-------~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~ 178 (239)
T TIGR02990 108 SSAAVDGLAALGVRRISLLTPYTP-ETSRPMAQYFA-VRG-------FEIVNFTCLGLTDDREMARISPDCIVEAALAAF 178 (239)
T ss_pred HHHHHHHHHHcCCCEEEEECCCcH-HHHHHHHHHHH-hCC-------cEEeeeeccCCCCCceeeecCHHHHHHHHHHhc
Confidence 455677888889999999999965 35555544431 112 344332110000000111123455555443332
Q ss_pred hhhcCCCceEEEEcCCccCCccHHHHHHH
Q 015713 207 DAKNKNVENVLILSGDHLYRMDYTEFLQK 235 (402)
Q Consensus 207 ~~~~~~~e~~Lvl~gD~l~~~di~~~l~~ 235 (402)
...-+.++++|-.+--.++.+-++.
T Consensus 179 ----~~~aDAifisCTnLrt~~vi~~lE~ 203 (239)
T TIGR02990 179 ----DPDADALFLSCTALRAATCAQRIEQ 203 (239)
T ss_pred ----CCCCCEEEEeCCCchhHHHHHHHHH
Confidence 1345667777877776666555554
No 159
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=31.79 E-value=6.6e+02 Score=26.77 Aligned_cols=46 Identities=4% Similarity=0.013 Sum_probs=30.8
Q ss_pred CChHHHHHHHHHHHHhh---hcCCCceEEEEcCCccCCccHHHHHHHHH
Q 015713 192 QGTADAVRQFIWVFEDA---KNKNVENVLILSGDHLYRMDYTEFLQKHI 237 (402)
Q Consensus 192 ~Gta~Al~~~~~~l~~~---~~~~~e~~Lvl~gD~l~~~di~~~l~~h~ 237 (402)
.|=+++|..+...+... .+...|-++++.+|.+...+..+.+..+.
T Consensus 135 ~~Ka~aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~~v~Pd~Lr~~~~~~ 183 (504)
T PRK14716 135 TSKADCLNWIYQAIFAFERERGIRFAIIVLHDAEDVIHPLELRLYNYLL 183 (504)
T ss_pred CCHHHHHHHHHHHHHHhhhhcCCCcCEEEEEcCCCCcCccHHHHHHhhc
Confidence 36788888777665211 11123889999999999988766555443
No 160
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=29.45 E-value=6.9e+02 Score=27.72 Aligned_cols=40 Identities=18% Similarity=0.267 Sum_probs=29.6
Q ss_pred ChHHHHHHHHHHHHhhhcCCCceEEEEcCCccCCccH-HHHHHHHHh
Q 015713 193 GTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDY-TEFLQKHID 238 (402)
Q Consensus 193 Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~di-~~~l~~h~~ 238 (402)
+-++++..++... ..|.++++.+|++...|. .+++..+.+
T Consensus 215 ~KAgnLN~al~~a------~gd~Il~lDAD~v~~pd~L~~~v~~f~~ 255 (713)
T TIGR03030 215 AKAGNINNALKHT------DGELILIFDADHVPTRDFLQRTVGWFVE 255 (713)
T ss_pred CChHHHHHHHHhc------CCCEEEEECCCCCcChhHHHHHHHHHHh
Confidence 4577887776543 468999999999998885 666666544
No 161
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=26.95 E-value=4.6e+02 Score=23.41 Aligned_cols=105 Identities=12% Similarity=0.126 Sum_probs=56.5
Q ss_pred eecCCcchHHHHHHHHhHhCCC---CeEEEEccCCch---hHHHHHHhhccCCCCcccCCCcEEEEecccCCCcCCcccc
Q 015713 118 VPIGGNYRLIDIPMSNCINSGF---NKIFIMTQFNSF---SLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWF 191 (402)
Q Consensus 118 vpIgG~~pLId~~i~~l~~~GI---~~IiVv~~~~~~---~i~~~l~~~y~~~~g~~~~~~~V~vl~~~q~~~~~g~~~~ 191 (402)
+|.-+....|...++.+...-. -+|+|+-..... .+.+.+...+ ....+.++...... .+.
T Consensus 3 Ip~yn~~~~l~~~l~sl~~q~~~~~~eiiVvDd~S~d~t~~i~~~~~~~~--------~~~~~~~~~~~~~~-----~~~ 69 (219)
T cd06913 3 LPVHNGEQWLDECLESVLQQDFEGTLELSVFNDASTDKSAEIIEKWRKKL--------EDSGVIVLVGSHNS-----PSP 69 (219)
T ss_pred EeecCcHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCccHHHHHHHHHHhC--------cccCeEEEEecccC-----CCC
Confidence 4555554677888888876432 267777554322 2222222221 11114443211110 112
Q ss_pred CChHHHHHHHHHHHHhhhcCCCceEEEEcCCccCCcc-HHHHHHHHHhCCC
Q 015713 192 QGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHIDTKA 241 (402)
Q Consensus 192 ~Gta~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~d-i~~~l~~h~~~~a 241 (402)
.|-+.|...++..- ..+.++++.+|.++..+ +..++....+.+.
T Consensus 70 ~G~~~a~N~g~~~a------~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~ 114 (219)
T cd06913 70 KGVGYAKNQAIAQS------SGRYLCFLDSDDVMMPQRIRLQYEAALQHPN 114 (219)
T ss_pred ccHHHHHHHHHHhc------CCCEEEEECCCccCChhHHHHHHHHHHhCCC
Confidence 47777776665432 46899999999988765 5666666655443
No 162
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=26.80 E-value=1.8e+02 Score=24.74 Aligned_cols=45 Identities=18% Similarity=0.347 Sum_probs=31.6
Q ss_pred HHHHHHhhhcCCCceEEEEcCCccCCccHHHHHHHHHhCCCcEEEEEEE
Q 015713 201 FIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVP 249 (402)
Q Consensus 201 ~~~~l~~~~~~~~e~~Lvl~gD~l~~~di~~~l~~h~~~~aditi~~~~ 249 (402)
+.+.++.+.....+.+++++||. |+..+++..++.|..+.+++.+
T Consensus 88 ~~d~~~~~~~~~~d~ivLvSgD~----Df~~~i~~lr~~G~~V~v~~~~ 132 (149)
T cd06167 88 AIDALELAYKRRIDTIVLVSGDS----DFVPLVERLRELGKRVIVVGFE 132 (149)
T ss_pred HHHHHHHhhhcCCCEEEEEECCc----cHHHHHHHHHHcCCEEEEEccC
Confidence 33444433333578999999997 8888888888888777666554
No 163
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=26.78 E-value=4.7e+02 Score=23.45 Aligned_cols=86 Identities=13% Similarity=0.158 Sum_probs=50.4
Q ss_pred hHHHHHHHHhHhCCCCeEEEEccCCchhHHHHHHhhccCCCCcccCCCcEEEEecccCCCcCCccccCChHHHHHHHHHH
Q 015713 125 RLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWV 204 (402)
Q Consensus 125 pLId~~i~~l~~~GI~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~~~~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~~~ 204 (402)
..|...++.+.+. ..+|+|+=+...... .... .+ ....+.++..... +|-+.|...++..
T Consensus 11 ~~l~~~l~sl~~q-~~~iivvDn~s~~~~-~~~~-~~--------~~~~i~~i~~~~n---------~G~~~a~N~g~~~ 70 (237)
T cd02526 11 SKLKELLAALAEQ-VDKVVVVDNSSGNDI-ELRL-RL--------NSEKIELIHLGEN---------LGIAKALNIGIKA 70 (237)
T ss_pred HHHHHHHHHHhcc-CCEEEEEeCCCCccH-HHHh-hc--------cCCcEEEEECCCc---------eehHHhhhHHHHH
Confidence 5677778887776 567766654322221 1111 11 1112556553332 4778888877665
Q ss_pred HHhhhcCCCceEEEEcCCccCCccH-HHHH
Q 015713 205 FEDAKNKNVENVLILSGDHLYRMDY-TEFL 233 (402)
Q Consensus 205 l~~~~~~~~e~~Lvl~gD~l~~~di-~~~l 233 (402)
.. +.+.+.++++.+|.....+. ..++
T Consensus 71 a~---~~~~d~v~~lD~D~~~~~~~l~~l~ 97 (237)
T cd02526 71 AL---ENGADYVLLFDQDSVPPPDMVEKLL 97 (237)
T ss_pred HH---hCCCCEEEEECCCCCcCHhHHHHHH
Confidence 43 22458999999999988774 5553
No 164
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=22.62 E-value=99 Score=25.89 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=20.4
Q ss_pred CcchHHHHHHHHhHhCCCCeEEEEc
Q 015713 122 GNYRLIDIPMSNCINSGFNKIFIMT 146 (402)
Q Consensus 122 G~~pLId~~i~~l~~~GI~~IiVv~ 146 (402)
+. |-|+..++.|...|+++|+|+=
T Consensus 44 ~~-P~l~~~l~~l~~~g~~~v~vvP 67 (126)
T PRK00923 44 NE-PTIPEALKKLIGTGADKIIVVP 67 (126)
T ss_pred CC-CCHHHHHHHHHHcCCCEEEEEc
Confidence 45 8899999999999999988863
No 165
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=22.42 E-value=4.9e+02 Score=22.13 Aligned_cols=99 Identities=9% Similarity=0.092 Sum_probs=53.6
Q ss_pred eecCCcchHHHHHHHHhHhC--CCCeEEEEccCCchhHHHHHHhhccCCCCcccCCCcEEEEecccCCCcCCccccCChH
Q 015713 118 VPIGGNYRLIDIPMSNCINS--GFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTA 195 (402)
Q Consensus 118 vpIgG~~pLId~~i~~l~~~--GI~~IiVv~~~~~~~i~~~l~~~y~~~~g~~~~~~~V~vl~~~q~~~~~g~~~~~Gta 195 (402)
+|.-+....|..+++.+.+. ..-+|+|+-........+.+. .+ .. ......+.+....+ -.|.+
T Consensus 3 ip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~t~~~~~-~~-~~---~~~~~~~~~~~~~~---------~~~~~ 68 (182)
T cd06420 3 ITTYNRPEALELVLKSVLNQSILPFEVIIADDGSTEETKELIE-EF-KS---QFPIPIKHVWQEDE---------GFRKA 68 (182)
T ss_pred EeecCChHHHHHHHHHHHhccCCCCEEEEEeCCCchhHHHHHH-HH-Hh---hcCCceEEEEcCCc---------chhHH
Confidence 45655546778888888764 234777765544433333332 21 00 01111122322111 02456
Q ss_pred HHHHHHHHHHHhhhcCCCceEEEEcCCccCCcc-HHHHHHHH
Q 015713 196 DAVRQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKH 236 (402)
Q Consensus 196 ~Al~~~~~~l~~~~~~~~e~~Lvl~gD~l~~~d-i~~~l~~h 236 (402)
.+...+.... ..+.++++.+|.+...+ +..+++.+
T Consensus 69 ~~~n~g~~~a------~g~~i~~lD~D~~~~~~~l~~~~~~~ 104 (182)
T cd06420 69 KIRNKAIAAA------KGDYLIFIDGDCIPHPDFIADHIELA 104 (182)
T ss_pred HHHHHHHHHh------cCCEEEEEcCCcccCHHHHHHHHHHh
Confidence 6666665443 46899999999988777 46666655
No 166
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=21.55 E-value=2.4e+02 Score=24.88 Aligned_cols=31 Identities=16% Similarity=0.166 Sum_probs=26.4
Q ss_pred HHHHHHhHhCCCCeEEEEccCCchhHHHHHH
Q 015713 128 DIPMSNCINSGFNKIFIMTQFNSFSLNRHLA 158 (402)
Q Consensus 128 d~~i~~l~~~GI~~IiVv~~~~~~~i~~~l~ 158 (402)
+++++.|.+.|++.||-+.|.....+.+.+.
T Consensus 4 ~~l~~~L~~~Gv~~vFgipG~~~~~l~~al~ 34 (164)
T cd07039 4 DVIVETLENWGVKRVYGIPGDSINGLMDALR 34 (164)
T ss_pred HHHHHHHHHCCCCEEEEcCCCchHHHHHHHh
Confidence 6788899999999999999987777777664
No 167
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=20.73 E-value=7.6e+02 Score=23.76 Aligned_cols=100 Identities=15% Similarity=0.136 Sum_probs=56.0
Q ss_pred hHHHHHHHHhHhCCCCe-EEE-EccCCchhHHHHHHhhccCCCCcccCCCcEEEEecccCCCcCCccccCChHHHHHHHH
Q 015713 125 RLIDIPMSNCINSGFNK-IFI-MTQFNSFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFI 202 (402)
Q Consensus 125 pLId~~i~~l~~~GI~~-IiV-v~~~~~~~i~~~l~~~y~~~~g~~~~~~~V~vl~~~q~~~~~g~~~~~Gta~Al~~~~ 202 (402)
..+...+..+.+..... .+| +-+.......+.+.... ++ .|.++..... .|=|++.-.+.
T Consensus 16 ~~l~~~l~~l~~~~~~~~~iv~vDn~s~d~~~~~~~~~~-------~~--~v~~i~~~~N---------lG~agg~n~g~ 77 (305)
T COG1216 16 EDLVECLASLAAQTYPDDVIVVVDNGSTDGSLEALKARF-------FP--NVRLIENGEN---------LGFAGGFNRGI 77 (305)
T ss_pred HHHHHHHHHHhcCCCCCcEEEEccCCCCCCCHHHHHhhc-------CC--cEEEEEcCCC---------ccchhhhhHHH
Confidence 55666777777765433 333 33333333334443321 11 2666654433 35666665554
Q ss_pred HHHHhhhcCCCc-eEEEEcCCccCCcc-HHHHHHHHHhCCCcEEEE
Q 015713 203 WVFEDAKNKNVE-NVLILSGDHLYRMD-YTEFLQKHIDTKADITVS 246 (402)
Q Consensus 203 ~~l~~~~~~~~e-~~Lvl~gD~l~~~d-i~~~l~~h~~~~aditi~ 246 (402)
..... ... .+++++-|++...+ +.++++.+.+.+..+.+.
T Consensus 78 ~~a~~----~~~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~ 119 (305)
T COG1216 78 KYALA----KGDDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVG 119 (305)
T ss_pred HHHhc----CCCcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEee
Confidence 44321 223 69999999888766 688998888776554333
No 168
>PRK05782 bifunctional sirohydrochlorin cobalt chelatase/precorrin-8X methylmutase; Validated
Probab=20.18 E-value=1.5e+02 Score=29.90 Aligned_cols=68 Identities=19% Similarity=0.274 Sum_probs=41.0
Q ss_pred CCCCeeEEEEcCCCCCcCCCCC----------CCCCccceecC----CcchHHHHHHHHhHhCCCCeEEEEccC------
Q 015713 89 DPKNVAAIILGGGAGTRLFPLT----------NRRAKPAVPIG----GNYRLIDIPMSNCINSGFNKIFIMTQF------ 148 (402)
Q Consensus 89 ~~~~m~AIILAaG~GtRL~PlT----------~~~PKpLvpIg----G~~pLId~~i~~l~~~GI~~IiVv~~~------ 148 (402)
|++.|.+|||.| .|||.-.-. ..++..-+..+ .. |-|...++.|...|.++|+|+--+
T Consensus 2 ~~~~~~aiLLvg-HGSRdp~~~~~~~~La~~l~~~~~~~V~~aFLE~~e-Psl~eal~~l~~~G~~~IvVvPlFL~~G~H 79 (335)
T PRK05782 2 DRQSNTAIILIG-HGSRRETFNSDMEGMANYLKEKLGVPIYLTYNEFAE-PNWRSLLNEIIKEGYRRVIIALAFLGRGNH 79 (335)
T ss_pred CCCCCceEEEEe-cCCCChHHHHHHHHHHHHHHhccCCceEEEEeccCC-CCHHHHHHHHHHCCCCEEEEecccccCCcc
Confidence 466778888865 777752110 01111112222 34 889999999999999998887533
Q ss_pred CchhHHHHHH
Q 015713 149 NSFSLNRHLA 158 (402)
Q Consensus 149 ~~~~i~~~l~ 158 (402)
-.+.|-..|.
T Consensus 80 v~~DIP~~L~ 89 (335)
T PRK05782 80 VFRDIMGELG 89 (335)
T ss_pred hhhhHHHHHH
Confidence 2345555554
Done!