Query 015714
Match_columns 402
No_of_seqs 134 out of 1468
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 08:53:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015714.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015714hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1440 CDP-diacylglycerol syn 100.0 7.9E-89 1.7E-93 673.4 27.9 387 5-398 18-431 (432)
2 PLN02594 phosphatidate cytidyl 100.0 4.2E-82 9E-87 621.8 34.6 320 82-401 2-341 (342)
3 PRK11624 cdsA CDP-diglyceride 100.0 2.6E-53 5.6E-58 415.1 31.8 269 46-359 1-281 (285)
4 PLN02953 phosphatidate cytidyl 100.0 2.6E-51 5.7E-56 407.7 30.5 272 38-360 89-398 (403)
5 COG4589 Predicted CDP-diglycer 100.0 1.5E-49 3.3E-54 370.5 28.9 260 41-359 30-301 (303)
6 COG0575 CdsA CDP-diglyceride s 100.0 2.8E-47 6.1E-52 369.5 29.9 257 46-359 1-262 (265)
7 PF01148 CTP_transf_1: Cytidyl 100.0 1.4E-46 3.1E-51 358.8 26.9 258 48-359 1-259 (259)
8 PRK04032 hypothetical protein; 99.9 1.2E-27 2.5E-32 213.6 10.1 102 224-357 22-124 (159)
9 PF01864 DUF46: Putative integ 99.2 5.3E-11 1.1E-15 108.8 10.4 106 236-372 44-149 (175)
10 KOG4453 Predicted ER membrane 97.3 0.00041 8.9E-09 65.5 5.8 48 210-259 162-209 (269)
11 COG0170 SEC59 Dolichol kinase 97.2 0.001 2.2E-08 63.2 7.8 45 213-258 122-166 (216)
12 KOG2468 Dolichol kinase [Lipid 94.0 0.055 1.2E-06 56.1 3.9 43 214-258 419-461 (510)
13 KOG1440 CDP-diacylglycerol syn 65.9 1.8E+02 0.0039 30.5 15.1 41 209-249 272-312 (432)
14 COG1836 Predicted membrane pro 60.4 51 0.0011 32.0 8.4 47 213-259 129-184 (247)
15 TIGR00994 3a0901s05TIC20 chlor 54.0 39 0.00083 33.1 6.5 62 6-68 75-136 (267)
16 PF01940 DUF92: Integral membr 52.8 1.2E+02 0.0027 29.1 9.7 48 212-259 114-170 (226)
17 TIGR00836 amt ammonium transpo 52.4 14 0.0003 38.5 3.5 38 296-336 280-317 (403)
18 PRK10666 ammonium transporter; 50.3 12 0.00025 39.4 2.5 38 296-336 304-341 (428)
19 COG0004 AmtB Ammonia permease 45.9 48 0.0011 34.6 6.1 38 296-336 281-318 (409)
20 TIGR03644 marine_trans_1 proba 43.7 13 0.00029 38.7 1.7 37 296-336 294-330 (404)
21 TIGR00297 conserved hypothetic 38.6 2.5E+02 0.0054 27.2 9.4 47 212-258 119-174 (237)
22 PF10031 DUF2273: Small integr 35.1 1.4E+02 0.003 21.9 5.5 41 43-84 3-43 (51)
23 PRK02868 hypothetical protein; 34.5 72 0.0016 31.1 5.0 19 371-389 60-78 (245)
24 PF09150 Carot_N: Orange carot 33.2 93 0.002 28.3 5.2 24 368-392 59-82 (159)
25 PF10766 DUF2592: Protein of u 32.5 1.6E+02 0.0034 20.7 4.9 35 49-95 3-37 (41)
26 PRK10847 hypothetical protein; 29.3 38 0.00083 32.0 2.2 22 212-233 80-101 (219)
27 KOG4753 Predicted membrane pro 29.3 1.6E+02 0.0034 25.6 5.6 13 1-13 1-13 (124)
28 PF00909 Ammonium_transp: Ammo 29.2 24 0.00053 36.4 0.9 38 296-336 275-312 (399)
29 COG4240 Predicted kinase [Gene 28.8 82 0.0018 30.9 4.3 67 320-395 199-266 (300)
30 PF11460 DUF3007: Protein of u 28.6 1.7E+02 0.0037 24.8 5.7 73 311-392 16-104 (104)
31 TIGR01597 PYST-B Plasmodium yo 27.4 3E+02 0.0065 26.7 7.7 35 46-80 196-230 (255)
32 PF11283 DUF3084: Protein of u 26.7 65 0.0014 25.9 2.7 18 224-241 23-42 (79)
33 PF09335 SNARE_assoc: SNARE as 25.7 45 0.00097 27.6 1.8 23 212-234 25-47 (123)
34 PF01741 MscL: Large-conductan 25.5 2.8E+02 0.0061 24.2 6.8 81 310-397 34-128 (128)
35 PF04868 PDE6_gamma: Retinal c 23.9 48 0.0011 26.5 1.5 19 323-341 41-59 (83)
36 PF05767 Pox_A14: Poxvirus vir 22.5 4.5E+02 0.0097 21.8 6.9 37 296-334 44-81 (92)
37 KOG0682 Ammonia permease [Inor 22.0 49 0.0011 35.3 1.6 37 296-336 312-348 (500)
No 1
>KOG1440 consensus CDP-diacylglycerol synthase [Lipid transport and metabolism]
Probab=100.00 E-value=7.9e-89 Score=673.39 Aligned_cols=387 Identities=53% Similarity=0.939 Sum_probs=353.9
Q ss_pred CCCCCCCcc--chhccc----CCCCCCccccccCCCccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 015714 5 NNTSAPTTP--RLRHRR----RSNEAIPDATKANGSHLLVHDRNKYKSFLVRAYSTVWMIAGFVLIVYMGHLYITAMVVV 78 (402)
Q Consensus 5 ~~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~R~is~~vli~~~i~ii~~G~~~~~~lv~~ 78 (402)
|++.+++++ ++++|+ +++|.+++.+..+..+.+++.+++|+|+..|.+++++|+..+.+++++|+.+...++..
T Consensus 18 ~~~~~~s~~~~~l~~~~~~~~~~~~~s~~~~p~~~~~~l~~~~~~~~n~~~R~i~t~~mi~~f~~i~~~g~~~~~~lv~~ 97 (432)
T KOG1440|consen 18 NATESESTPSGELQLRDRTRKIRPPVSKDRTPVRLKPLLSALRSRWKNFFRRGILTLAMISGFFLIIYMGHKYLMALVLV 97 (432)
T ss_pred cCCCCCCCcccccchhhcccccCCCCCCCCCcccchhhhhhCCCCceeeehHHHHHHHHHhccEEEEecCcchhhhhhhh
Confidence 344445544 666666 66777777888888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 015714 79 IQIFMARELFNLLRKAHEERDLPGFRMLNWHFFFTAMLFVYGRILSQRLVNTVTSDKFLYQFVSSLIKYHMVICYFLYIS 158 (402)
Q Consensus 79 i~~~~~~E~~~l~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ly~~ 158 (402)
+++.+.+|.+++.++..+++.+|+++.++|++++++.+++|++.+..++...+..+..+ ..+..+|.++++.+|+.
T Consensus 98 iQi~~~~Eii~i~~~~~~~k~lp~f~~l~w~fl~t~~yf~yg~~~~~yf~~v~~~~~~l----~~LV~yh~fi~f~lYi~ 173 (432)
T KOG1440|consen 98 IQIKCFKEIIAIGRKVSREKDLPWFRLLNWYFLLTVNYFVYGEILVAYFAAVFIRDRFL----FFLVRYHRFICFALYLI 173 (432)
T ss_pred HHHHHHHHHHHHhhccccccCCceeehhhhHHHHHHHHHHhHHHHHHHHHHHHhhhHHH----HHHHHhcccccHHHHHH
Confidence 99999999999999999999999999999999999999999998888877766665544 34566999999999999
Q ss_pred HHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHhhhhhHhhhhhhhHHHHHHHHHHHHhhHHHHHHhhhhCCCcCccCCC
Q 015714 159 GFVWFILTLKKKMYKYQFSQYAWTHMILIVVFAQSSFTVASIFEGIFWFLLPASLIVINDIAAYIFGFFFGRTPLIKLSP 238 (402)
Q Consensus 159 ~~v~fvl~L~~~~~~~~~~~~~~~~~~l~~v~~~s~~~i~~~~~G~~w~i~~~~~V~~nDt~AY~~G~~fGk~kL~~iSP 238 (402)
++++|+++|+++.|++|+++++|+|+.+++++.|+++.+.|+++|.+|+++|+.+++|||++||++|..||||||+++||
T Consensus 174 gf~~FV~sL~k~~yk~QFg~fawtH~sll~Vv~qs~l~i~N~feG~fWFl~P~~lvicnDi~AY~~Gf~fGktPLiklSP 253 (432)
T KOG1440|consen 174 GFVSFVLSLRKGIYKLQFGLFAWTHMSLLLVVTQSHLVIQNLFEGLFWFLVPAGLVICNDIFAYLFGFFFGKTPLIKLSP 253 (432)
T ss_pred HHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhHhheeCchHHHHHhhhhcCCcccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHHHHH----------------hhhc-ccccCCCCCCCCCCCCCCCC----CCccccccchHHHH
Q 015714 239 KKTWEGFIGASVATITSAFVD----------------LATG-WLHCDPGPLFKPESFPLPGW----LPWKEITILPVQWH 297 (402)
Q Consensus 239 kKTwEGfIGG~i~t~i~~~i~----------------~~~~-~~~c~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 297 (402)
||||||||||.+++++.+++. ..++ +++|++++.|.++.|.+|++ .++.+++..|.++|
T Consensus 254 KKTwEGFiGg~~~tvv~~i~~s~vL~~~~~~~cp~~d~~t~~~~~c~p~~~F~~~~y~lp~~i~~~i~~k~is~~p~~~H 333 (432)
T KOG1440|consen 254 KKTWEGFIGGTFGTVVFGILFSYVLGHYTFFTCPVKDFSTTPLLSCEPKPLFEPQTYGLPGVISITIRLKSISLPPFQFH 333 (432)
T ss_pred CCccchhhchhHHHHHHHHHHHHHhccCeEEEecccccCCCCccccCcccccCcceecCCceeeeeccccccccchHHHH
Confidence 999999999988888877661 1122 69999999999999999977 35567888899999
Q ss_pred HHHHHHHHHHhhhhhhHHHHHhhhcCCCCccCCCCCCCcchhhhhhhhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhc
Q 015714 298 ALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFAYIYHQSFIVPQSFRVEMILEQILTA 377 (402)
Q Consensus 298 ~l~lgl~~sl~a~fGDL~eS~~KR~~gVKDsG~lIPGHGGiLDR~Dsll~~~~~~y~y~~~fi~~~~~~~~~~~~~~~~~ 377 (402)
++.+|+++|++||||||+||++||++||||||+.||||||++||+|||++|+.|+|.|+++|++.+..| +++++|++
T Consensus 334 sial~~faS~iaPFGGFfASgfKRafKiKDFG~~IPGHGGI~DR~DCQ~lma~Fay~Yi~SFI~~~~~s--~ll~qi~~- 410 (432)
T KOG1440|consen 334 SIALGLFASFIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMDCQILMATFAYVYIQSFIRLPGVS--KLLDQILT- 410 (432)
T ss_pred HHHHHHHHHhhccchhHHHHHhHHhhcCCcccccCCCCCCcchhhHHHHHHHHHHHHHHHHHhccCCHH--HHHHHHHh-
Confidence 999999999999999999999999999999999999999999999999999999999999999988866 99999998
Q ss_pred CCHHHHHHHHHHHHHHHhhcc
Q 015714 378 LTYEEQKALYMKLGEILQERL 398 (402)
Q Consensus 378 l~~~~~~~~~~~l~~~~~~~~ 398 (402)
|++|||++++++|++++++++
T Consensus 411 l~~~qq~~l~~~L~~~l~~~~ 431 (432)
T KOG1440|consen 411 LTPEQQLNLFEKLQRRLSSKG 431 (432)
T ss_pred CCHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999874
No 2
>PLN02594 phosphatidate cytidylyltransferase
Probab=100.00 E-value=4.2e-82 Score=621.81 Aligned_cols=320 Identities=84% Similarity=1.423 Sum_probs=296.0
Q ss_pred HHHHHHHHHhhhccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015714 82 FMARELFNLLRKAHEERDLPGFRMLNWHFFFTAMLFVYGRILSQRLVNTVTSDKFLYQFVSSLIKYHMVICYFLYISGFV 161 (402)
Q Consensus 82 ~~~~E~~~l~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ly~~~~v 161 (402)
.+++|++++.++.++++++|+++.++||+++++++++|++.+..++......++.+..+...++++|.++++++|+.+++
T Consensus 2 ~~f~Eii~i~~~~~~~~~lp~~~~l~Wyf~~~~~~~~yg~~~~~~~~~~~~~~~~l~~~~~~~~~~h~~isf~ly~~gfv 81 (342)
T PLN02594 2 LMARELFNLARKAREERQLPGFRLLNWHFFFTAMFFVYGRFLKQQLVNTVTSDKFLYRLVSGLIKYHMAICYSLYIAGFV 81 (342)
T ss_pred hhhHHHHHHhhhhhhhhCCCchhhHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999988888777777777777777899999999999999999
Q ss_pred HHHHHHhhhchhhhhhhHHHHHHHHHHHHHhhhhhHhhhhhhhHHHHHHHHHHHHhhHHHHHHhhhhCCCcCccCCCCCC
Q 015714 162 WFILTLKKKMYKYQFSQYAWTHMILIVVFAQSSFTVASIFEGIFWFLLPASLIVINDIAAYIFGFFFGRTPLIKLSPKKT 241 (402)
Q Consensus 162 ~fvl~L~~~~~~~~~~~~~~~~~~l~~v~~~s~~~i~~~~~G~~w~i~~~~~V~~nDt~AY~~G~~fGk~kL~~iSPkKT 241 (402)
+|+++|+|+++++|+.+++|+++.+++++.++++++.|+++|..|+++|+++||+||++||++||.||||||+++|||||
T Consensus 82 ~FvlsL~k~~~k~qf~~~a~t~~~llyV~~~~~~ii~ni~~G~~w~~l~~~lV~~nDi~AY~~G~~fGk~kL~~iSPkKT 161 (342)
T PLN02594 82 WFILTLKKGMYKYQFGQYAWTHMILIVVFTQSSFTVANIFEGIFWFLLPASLIVINDIAAYLFGFFFGRTPLIKLSPKKT 161 (342)
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCCccCCCCc
Confidence 99999999999999999999999999999999998889999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHhh----------------hcccccCCCCCCCCCCCCCCCCC----CccccccchHHHHHHHH
Q 015714 242 WEGFIGASVATITSAFVDLA----------------TGWLHCDPGPLFKPESFPLPGWL----PWKEITILPVQWHALCL 301 (402)
Q Consensus 242 wEGfIGG~i~t~i~~~i~~~----------------~~~~~c~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~l 301 (402)
|||++||+++|++++.+... .++++|+++|+|.++.|.+|.+. ++.++...|.++|++++
T Consensus 162 wEGfiGg~i~T~i~~~~~~~~~~~~~~~~cp~~~~~~~~~~C~p~~~f~~~~~~~p~~~~~~~~~~~i~~~~~~~h~l~l 241 (342)
T PLN02594 162 WEGFIGASVTTLISAFYLANIMGKFQWLTCPRKDLSTGWLECDPDPLFKPETYPLPGWIPRWFPWKEVSVLPVQWHALSL 241 (342)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhcccccccCCccccccCcccCCCccccccccccCCccccccccccccccchHHHHHHHH
Confidence 99999999999998877321 12478999999999999998552 22244556778999999
Q ss_pred HHHHHHhhhhhhHHHHHhhhcCCCCccCCCCCCCcchhhhhhhhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCHH
Q 015714 302 GLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFAYIYHQSFIVPQSFRVEMILEQILTALTYE 381 (402)
Q Consensus 302 gl~~sl~a~fGDL~eS~~KR~~gVKDsG~lIPGHGGiLDR~Dsll~~~~~~y~y~~~fi~~~~~~~~~~~~~~~~~l~~~ 381 (402)
|+++|++||+|||+||++||++||||||++||||||++||+||+++|+|++|+|+.+||+.++.+++++++++.++|++|
T Consensus 242 ~l~aSl~a~fGdlfaS~~KR~~~IKDfG~~IPGHGGilDRfDs~l~~~~f~y~y~~~fi~~~~~~~~~il~~i~~~l~~~ 321 (342)
T PLN02594 242 GLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFAYIYYQSFIVPQSVSVGKLLDQILTLLTDE 321 (342)
T ss_pred HHHHHHHHHhhhHHHHHHHHccCCCcccCccCCCccccccccHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998889999
Q ss_pred HHHHHHHHHHHHHhhcccCC
Q 015714 382 EQKALYMKLGEILQERLFGQ 401 (402)
Q Consensus 382 ~~~~~~~~l~~~~~~~~~~~ 401 (402)
||++++++|++++++++..+
T Consensus 322 ~q~~l~~~l~~~l~~~g~~~ 341 (342)
T PLN02594 322 EQKELYVKLGQMLQERGLGL 341 (342)
T ss_pred HHHHHHHHHHHHHHHcCCCC
Confidence 99999999999999998765
No 3
>PRK11624 cdsA CDP-diglyceride synthase; Provisional
Probab=100.00 E-value=2.6e-53 Score=415.13 Aligned_cols=269 Identities=22% Similarity=0.324 Sum_probs=170.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 015714 46 SFLVRAYSTVWMIAGFVLIVYM-GHLYITAMVVVIQIFMARELFNLLRKAHEERDLPGFRMLNWHFFFTAMLFVYGRILS 124 (402)
Q Consensus 46 ~l~~R~is~~vli~~~i~ii~~-G~~~~~~lv~~i~~~~~~E~~~l~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~ 124 (402)
++++|++|+++++++++.++++ |++++.+++.+++.++.+||+++.+.+....+ +..... .... .....+...
T Consensus 1 ml~~Riita~vlv~l~l~~i~~~~~~~f~~l~~~~~~l~~~E~~~l~~~~~~~~~-~~~~~~-~~~~--~~~~~~~~~-- 74 (285)
T PRK11624 1 MLKYRLITAFILIPVVIAALFLLPPVGFAIVTLVVCMLAAWEWGQLSGFASRSQR-VWLAVL-CGLL--LALMLFLLP-- 74 (285)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccchh-HHHHHH-HHHH--HHHHHHHHH--
Confidence 4789999999999999998876 56889999999999999999999865432111 110100 0000 000000000
Q ss_pred HHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchh--hhhhhHHHHHHHH-HHHHHhhhhh-Hhhh
Q 015714 125 QRLVNTVTSDKFLYQFVSSLIKYHMVICYFLYISGFVWFILTLKKKMYK--YQFSQYAWTHMIL-IVVFAQSSFT-VASI 200 (402)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ly~~~~v~fvl~L~~~~~~--~~~~~~~~~~~~l-~~v~~~s~~~-i~~~ 200 (402)
. ..... + . ........... ++......++. ++++.. +.......+.... +++.....+. ++..
T Consensus 75 ~-~~~~~--~----~---~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~ 141 (285)
T PRK11624 75 E-YHHNI--H----Q---PLVEISLWASL-GWWIVALLLVL--FYPGSAAIWRNSKTLRLIFGVLTIVPFFWGMLALRAW 141 (285)
T ss_pred H-hhhhh--h----H---HHHHHHHHHHH-HHHHHHHHHHH--HccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 0 00000 0 0 00000000000 11110111111 111111 1111112222222 2222222222 2321
Q ss_pred ------hhhhHHHHHHHHHHHHhhHHHHHHhhhhCCCcCc-cCCCCCCchHHHHHHHHHHHHHHHHhhhcccccCCCCCC
Q 015714 201 ------FEGIFWFLLPASLIVINDIAAYIFGFFFGRTPLI-KLSPKKTWEGFIGASVATITSAFVDLATGWLHCDPGPLF 273 (402)
Q Consensus 201 ------~~G~~w~i~~~~~V~~nDt~AY~~G~~fGk~kL~-~iSPkKTwEGfIGG~i~t~i~~~i~~~~~~~~c~~~~~~ 273 (402)
++|..|+++++.+||+|||+||++||.|||||++ ++||||||||++||++++++++.+... +
T Consensus 142 ~~~~~~~~G~~~vl~l~~~vw~sDt~AYf~Gr~fGk~KL~P~ISPkKTwEG~iGg~~~~~~~~~~~~~--~--------- 210 (285)
T PRK11624 142 HYDENHYSGAWWLLYVMILVWGADSGAYMFGKLFGKHKLAPKVSPGKTWEGFIGGLATAAVISWLFGM--W--------- 210 (285)
T ss_pred cccccccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCCCCchhhhHHHHHHHHHHHHHHHH--H---------
Confidence 1488899999999999999999999999999999 799999999999999999998876311 0
Q ss_pred CCCCCCCCCCCCccccccchHHHHHHHHHHHHHHhhhhhhHHHHHhhhcCCCCccCCCCCCCcchhhhhhhhhHHHHHHH
Q 015714 274 KPESFPLPGWLPWKEITILPVQWHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFAY 353 (402)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~l~lgl~~sl~a~fGDL~eS~~KR~~gVKDsG~lIPGHGGiLDR~Dsll~~~~~~y 353 (402)
++ .... .++.++++++++++||+|||+||++||++||||||+++|||||+|||+||+++++|+.|
T Consensus 211 ----------~~---~~~~--~~~~~~~~~~~~~~~~~GDL~ES~lKR~~gVKDSG~llPGHGGiLDR~DSLlfa~P~~~ 275 (285)
T PRK11624 211 ----------AP---LDVA--PVTLLICSIVAALASVLGDLTESMFKREAGIKDSGHLIPGHGGILDRIDSLTAAVPVFA 275 (285)
T ss_pred ----------Hc---cccc--HHHHHHHHHHHHHHHHHhHHHHHHHhhccCCCCCcCcCCCcCcchhhHhHHHHHHHHHH
Confidence 00 0011 15678899999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHh
Q 015714 354 IYHQSF 359 (402)
Q Consensus 354 ~y~~~f 359 (402)
+++..+
T Consensus 276 ~~~~~~ 281 (285)
T PRK11624 276 CLLLLV 281 (285)
T ss_pred HHHHHH
Confidence 776443
No 4
>PLN02953 phosphatidate cytidylyltransferase
Probab=100.00 E-value=2.6e-51 Score=407.73 Aligned_cols=272 Identities=23% Similarity=0.306 Sum_probs=186.9
Q ss_pred cCChhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhccccCcc-hhhHHHHHHHHHHHHH
Q 015714 38 VHDRNKYKSFLVRAYSTVWMIAGFVLIVYMGHLYITAMVVVIQIFMARELFNLLRKAHEERDL-PGFRMLNWHFFFTAML 116 (402)
Q Consensus 38 ~~~~~~~~~l~~R~is~~vli~~~i~ii~~G~~~~~~lv~~i~~~~~~E~~~l~~~~~~~~~~-p~~~~l~~~~~~~~~~ 116 (402)
+++.+|.+|+++|++|+++++++.+.+++.|++++.++++++..++.+|++++.+.+...... |..+...........
T Consensus 89 ~~~~~~~~~l~~RIiSglvl~~l~l~vV~~GGw~F~~~va~iv~lg~~E~frmv~~~gi~p~~~~~~~~~~~~g~v~~~- 167 (403)
T PLN02953 89 EDKQKKASQLKKRVIFGIGIGLPVGCVVLAGGWFFTVALAASVFIGSREYFELVRSRGIAKGMTPPPRYVSRVCSVICA- 167 (403)
T ss_pred cccccccccHHHHHHHHHHHHHHHHheeeeCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccchHHHHHHHHHHHHH-
Confidence 445566789999999999999999999999999999999999999999999998765431110 111111000000000
Q ss_pred HHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHH-HHhhhh
Q 015714 117 FVYGRILSQRLVNTVTSDKFLYQFVSSLIKYHMVICYFLYISGFVWFILTLKKKMYKYQFSQYAWTHMILIVV-FAQSSF 195 (402)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ly~~~~v~fvl~L~~~~~~~~~~~~~~~~~~l~~v-~~~s~~ 195 (402)
.+.. .... ... ....+.+....++ +.+..+.+. ....+.+.+.+.+.++ +.++++
T Consensus 168 -~~~v--~~~~-----------------~g~-~~~~l~l~~~~i~-~~ll~~~~~--~~~~di~~s~fgl~Yig~lpsf~ 223 (403)
T PLN02953 168 -LMPI--LTLY-----------------FGN-IDILVTSAAFLVA-IALLVQRGS--PRFAQLSSTMFGLFYCGYLPCFW 223 (403)
T ss_pred -HHHH--HHHH-----------------HhH-HHHHHHHHHHHHH-HHHHhcCCc--ccHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 0000 000 0000000111111 112222211 1234444444443333 334444
Q ss_pred hHhh------------------------------------hhhhhHHHHHHHHHHHHhhHHHHHHhhhhCCCcCccCCCC
Q 015714 196 TVAS------------------------------------IFEGIFWFLLPASLIVINDIAAYIFGFFFGRTPLIKLSPK 239 (402)
Q Consensus 196 ~i~~------------------------------------~~~G~~w~i~~~~~V~~nDt~AY~~G~~fGk~kL~~iSPk 239 (402)
+..+ ...|..++++.+++||+||++||++||.|||||+.++|||
T Consensus 224 v~Lr~~~~~~~~~~~~~~~f~~l~~~~~~~~p~~~~~~~~~~~Gl~~~l~~~~~vw~~Di~AY~~G~~fGk~kl~~ISPk 303 (403)
T PLN02953 224 VKLRCGLAAPALNTGKLSPFISLKFSIGKTWPILLGGQAHWTVGLVATLISFSGVIATDTFAFLGGKAFGRTPLTSISPK 303 (403)
T ss_pred HHHhhccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcCCCC
Confidence 2211 1358889999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCCCccccccchHHHHHHHHHHHHHHhhhhhhHHHHHh
Q 015714 240 KTWEGFIGASVATITSAFVDLATGWLHCDPGPLFKPESFPLPGWLPWKEITILPVQWHALCLGLFASIIAPFGGFFASGF 319 (402)
Q Consensus 240 KTwEGfIGG~i~t~i~~~i~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lgl~~sl~a~fGDL~eS~~ 319 (402)
|||||++||++++++++.+... + +.+ . . ..++.+++++++++.|++|||+||++
T Consensus 304 KTwEG~iGGil~~vlv~~l~~~--~-------------------l~~-~--~--~~~~~i~lg~li~~~~~~GDL~eS~i 357 (403)
T PLN02953 304 KTWEGTFVGLVGCIAITILLSK--S-------------------LSW-P--Q--SLFSSIAFGFLNFFGSVFGDLTESMI 357 (403)
T ss_pred CeeeeehhHHHHHHHHHHHHHH--H-------------------Hcc-c--h--HHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999999998876311 0 011 0 0 12567899999999999999999999
Q ss_pred hhcCCCCccCCCCCCCcchhhhhhhhhHHHHHHHHHHHHhh
Q 015714 320 KRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFAYIYHQSFI 360 (402)
Q Consensus 320 KR~~gVKDsG~lIPGHGGiLDR~Dsll~~~~~~y~y~~~fi 360 (402)
||++||||||+++|||||+|||+||+++++|++|+++++..
T Consensus 358 KR~~gVKDsG~liPGHGGiLDR~DSllfaaPv~y~~~~~~~ 398 (403)
T PLN02953 358 KRDAGVKDSGSLIPGHGGILDRVDSYIFTGALAYSFIKTSL 398 (403)
T ss_pred hHccCCCCccccCCCCCcchhhHhHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999998765
No 5
>COG4589 Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase [General function prediction only]
Probab=100.00 E-value=1.5e-49 Score=370.54 Aligned_cols=260 Identities=25% Similarity=0.414 Sum_probs=207.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhccccCc--------chh---hHHHHHH
Q 015714 41 RNKYKSFLVRAYSTVWMIAGFVLIVYMGHLYITAMVVVIQIFMARELFNLLRKAHEERD--------LPG---FRMLNWH 109 (402)
Q Consensus 41 ~~~~~~l~~R~is~~vli~~~i~ii~~G~~~~~~lv~~i~~~~~~E~~~l~~~~~~~~~--------~p~---~~~l~~~ 109 (402)
+.++.|+..|+.++|+|+.++..+...|.++...++.++++.+++|+.++.+.++.++. +|. ...++||
T Consensus 30 ~~~~~~l~~RI~aWW~mv~i~~~~~~l~~~~~l~lF~~iSflalrEfltl~ptr~~d~~~l~~~Y~~lplqy~~i~i~wy 109 (303)
T COG4589 30 ERKIDELNLRIRAWWVMVIIFSLVISLPRWMTLTLFGLISFLALREFLTLIPTRRPDHLALVWFYWVLPLQYLLIGIDWY 109 (303)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcccccCCccchhhhhhhhhHhHHHhhhHHH
Confidence 44889999999999999999999999999999999999999999999999988775542 121 1235677
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHH
Q 015714 110 FFFTAMLFVYGRILSQRLVNTVTSDKFLYQFVSSLIKYHMVICYFLYISGFVWFILTLKKKMYKYQFSQYAWTHMILIVV 189 (402)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ly~~~~v~fvl~L~~~~~~~~~~~~~~~~~~l~~v 189 (402)
.+++.+..+|+....+... ....|. +.++.+....|+..+..+|+++++..++.|...+.+
T Consensus 110 ~mf~ifipvY~fL~Lp~l~-~L~gdt--~gFl~~~s~i~wg~mltvfcish~~~lltL~~~~~~---------------- 170 (303)
T COG4589 110 EMFIIFIPVYGFLILPILM-VLVGDT--SGFLHRVSAIQWGWMLTVFCISHAAYLLTLDITNFQ---------------- 170 (303)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHhcch--hhHHHHhHHHHHHHHHHHHHHHhhHHHhhCCCCCcC----------------
Confidence 7777777777765554332 122222 344555666777777778888887777766543322
Q ss_pred HHhhhhhHhhhhhhhHHHHHHHHHHHHhhHHHHHHhhhhCCCcCc-cCCCCCCchHHHHHHHHHHHHHHHHhhhcccccC
Q 015714 190 FAQSSFTVASIFEGIFWFLLPASLIVINDIAAYIFGFFFGRTPLI-KLSPKKTWEGFIGASVATITSAFVDLATGWLHCD 268 (402)
Q Consensus 190 ~~~s~~~i~~~~~G~~w~i~~~~~V~~nDt~AY~~G~~fGk~kL~-~iSPkKTwEGfIGG~i~t~i~~~i~~~~~~~~c~ 268 (402)
.|...+++.+.++..||+.+|.+||.|||||.. ++||||||||++||++.+++++.+.. ++
T Consensus 171 ------------~~~ll~iflli~~q~nDV~QYvwGk~fGk~Ki~P~vSPnKTveGl~GGilt~~~~~~~l~---~l--- 232 (303)
T COG4589 171 ------------GGALLVIFLLILTELNDVAQYVWGKSFGKRKIVPKVSPNKTVEGLIGGILTTMIASAILG---LL--- 232 (303)
T ss_pred ------------ccchHHHHHHHHHHHHHHHHHHHhhhcCCcccCCCcCCcchHHHHhhhHHHHHHHHHHHH---Hh---
Confidence 233345566678899999999999999999998 79999999999999999999887631 22
Q ss_pred CCCCCCCCCCCCCCCCCccccccchHHHHHHHHHHHHHHhhhhhhHHHHHhhhcCCCCccCCCCCCCcchhhhhhhhhHH
Q 015714 269 PGPLFKPESFPLPGWLPWKEITILPVQWHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMDCQMVM 348 (402)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lgl~~sl~a~fGDL~eS~~KR~~gVKDsG~lIPGHGGiLDR~Dsll~~ 348 (402)
+|. .+ .|+++.|+..++.|.+||++.|++||+.||||+|+.||||||+|||+||++|+
T Consensus 233 ---------------Tp~-----~~--lqa~~~~~~I~l~GF~GdlvmSaiKRd~gvKD~G~li~GHGGiLDR~DSL~Ft 290 (303)
T COG4589 233 ---------------TPL-----NT--LQALLAGLLIGLSGFCGDLVMSAIKRDVGVKDSGKLLPGHGGILDRVDSLIFT 290 (303)
T ss_pred ---------------CCC-----cH--HHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccCCCCccHHHHHHHHHHh
Confidence 221 12 68999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 015714 349 AVFAYIYHQSF 359 (402)
Q Consensus 349 ~~~~y~y~~~f 359 (402)
||+.+.+++.+
T Consensus 291 APiffh~~ry~ 301 (303)
T COG4589 291 APIFFHFIRYC 301 (303)
T ss_pred hhHHHHHHHHh
Confidence 99988887765
No 6
>COG0575 CdsA CDP-diglyceride synthetase [Lipid metabolism]
Probab=100.00 E-value=2.8e-47 Score=369.54 Aligned_cols=257 Identities=29% Similarity=0.462 Sum_probs=168.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 015714 46 SFLVRAYSTVWMIAGFVLIVYMGHLYITAMVVVIQIFMARELFNLLRKAHEERDLPGFRMLNWHFFFTAMLFVYGRILSQ 125 (402)
Q Consensus 46 ~l~~R~is~~vli~~~i~ii~~G~~~~~~lv~~i~~~~~~E~~~l~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~ 125 (402)
++++|++++.++++.+...++.+++++.++++++++.+++|++++.+.+....+........+... +.....
T Consensus 1 ~~~~r~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~--- 72 (265)
T COG0575 1 MLKQRVITAIVLLILFLLALLVGGLYFALLVLLLAILAILEAYRANRFAVLAGPLILGLPIDLGLV-----LLDGRR--- 72 (265)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHH-----HHHHHH---
Confidence 478999999999988888888889999999999999999999999986542222111111111100 000000
Q ss_pred HHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHH-HHHHHHh-hhhhHh-hh-h
Q 015714 126 RLVNTVTSDKFLYQFVSSLIKYHMVICYFLYISGFVWFILTLKKKMYKYQFSQYAWTHMI-LIVVFAQ-SSFTVA-SI-F 201 (402)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ly~~~~v~fvl~L~~~~~~~~~~~~~~~~~~-l~~v~~~-s~~~i~-~~-~ 201 (402)
. ..+. . .. .......+..+ ...... .+......+.... .++.+.. +..... .. +
T Consensus 73 -~----~~~~---~------~~-~~~~~~~~~~~-----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (265)
T COG0575 73 -L----LGDG---K------ET-LLGFLLGFLLG-----LVLLGV--IYYLSDSLFKLFGLLYVGVGLLALLPFRLGVLY 130 (265)
T ss_pred -H----hhhH---H------HH-HHHHHHHHHHH-----HHHHHh--hhhHHhhhhhhHHHHHHHHHHHHHHHHHHhhhh
Confidence 0 0000 0 00 00000000010 000000 1111111111111 1111111 111111 12 6
Q ss_pred hhhHHHHHHHHHHHHhhHHHHHHhhhhCCCcCc-cCCCCCCchHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCCCC
Q 015714 202 EGIFWFLLPASLIVINDIAAYIFGFFFGRTPLI-KLSPKKTWEGFIGASVATITSAFVDLATGWLHCDPGPLFKPESFPL 280 (402)
Q Consensus 202 ~G~~w~i~~~~~V~~nDt~AY~~G~~fGk~kL~-~iSPkKTwEGfIGG~i~t~i~~~i~~~~~~~~c~~~~~~~~~~~~~ 280 (402)
+|.+|.++++.+||+||++||++||.|||||+. ++||||||||++||++++++++......
T Consensus 131 ~g~~~~l~l~~~vw~~Di~Ayf~Gr~fGk~kl~p~iSP~KT~eGfigG~~~~~~v~~~~~~~------------------ 192 (265)
T COG0575 131 SGLILLLLLFLGVWAGDIGAYFVGRRFGKHKLAPKISPKKTWEGFIGGALGAVLVAVLVIFL------------------ 192 (265)
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHcCCCCCCCcCCCCCchHHhHHHHHHHHHHHHHHHHH------------------
Confidence 899999999999999999999999999999998 6999999999999999999887662110
Q ss_pred CCCCCccccccchHHHHHHHHHHHHHHhhhhhhHHHHHhhhcCCCCccCCCCCCCcchhhhhhhhhHHHHHHHHHHHHh
Q 015714 281 PGWLPWKEITILPVQWHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFAYIYHQSF 359 (402)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~l~lgl~~sl~a~fGDL~eS~~KR~~gVKDsG~lIPGHGGiLDR~Dsll~~~~~~y~y~~~f 359 (402)
.+ . ..+..++.+++++++++++|+||++||.+||++||||||++||||||+|||+||++++ ++|+|...+
T Consensus 193 ---~~--~--~~~~~~~~~~l~~~~~l~~~lGDL~eS~iKR~~gvKDsg~liPGHGGilDR~Dsl~~~--~~~~~~~~~ 262 (265)
T COG0575 193 ---LS--S--LILNIWTLLILGLLLVLTSQLGDLFESYIKRLLGIKDSGWLIPGHGGILDRFDSLLFV--AVYLFLLLF 262 (265)
T ss_pred ---Hh--h--hhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCcCCCCCCcCcccccHhhHHHH--HHHHHHHHH
Confidence 00 0 0012377889999999999999999999999999999999999999999999999999 666666444
No 7
>PF01148 CTP_transf_1: Cytidylyltransferase family; InterPro: IPR000374 Phosphatidate cytidylyltransferase (2.7.7.41 from EC) [, , ] (also known as CDP- diacylglycerol synthase) (CDS) is the enzyme that catalyzes the synthesis of CDP-diacylglycerol from CTP and phosphatidate (PA): CTP + phosphatidate = diphosphate + CDP-diacylglycerol CDP-diacylglycerol is an important branch point intermediate in both prokaryotic and eukaryotic organisms. CDS is a membrane-bound enzyme.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016020 membrane
Probab=100.00 E-value=1.4e-46 Score=358.85 Aligned_cols=258 Identities=33% Similarity=0.482 Sum_probs=179.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 015714 48 LVRAYSTVWMIAGFVLIVYMGHLYITAMVVVIQIFMARELFNLLRKAHEERDLPGFRMLNWHFFFTAMLFVYGRILSQRL 127 (402)
Q Consensus 48 ~~R~is~~vli~~~i~ii~~G~~~~~~lv~~i~~~~~~E~~~l~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~ 127 (402)
|+|++++++++++++.+++.|++++..++++++..+.+|+.++.++..+++..+......++++.......+.....+..
T Consensus 1 k~Ri~t~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (259)
T PF01148_consen 1 KQRIITAIILIPIFILLLFLGPWYFLLLVAVIIFLGFWELFRLFRIKSRSKFRLIIRILSWIFFLILFLFFYLRWLIPYF 80 (259)
T ss_pred CEeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccchhhHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 57999999999999999999999999999999999999999999876655443333233333332222222211110000
Q ss_pred HhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHH-hhhhhHhhhhhhhHH
Q 015714 128 VNTVTSDKFLYQFVSSLIKYHMVICYFLYISGFVWFILTLKKKMYKYQFSQYAWTHMILIVVFA-QSSFTVASIFEGIFW 206 (402)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~i~~~ly~~~~v~fvl~L~~~~~~~~~~~~~~~~~~l~~v~~-~s~~~i~~~~~G~~w 206 (402)
. .. ........+ +...+ .+..+...+...+.+... ...........+..+
T Consensus 81 ---------------------~-~~--~~~~~~~~~-l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (259)
T PF01148_consen 81 ---------------------F-AT--ILIIALLLF-LVLGE----RRIRRIISTLFGLIYFGIFLLLLLIFFWFFGPPL 131 (259)
T ss_pred ---------------------H-HH--HHHHhhhHH-hhhcc----hHHHHHHHHHHHHHHHhHHHHHHHhhhhccchHH
Confidence 0 00 000000111 11111 111222222222222211 112233455678888
Q ss_pred HHHHHHHHHHhhHHHHHHhhhhCCCcCccCCCCCCchHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCCCc
Q 015714 207 FLLPASLIVINDIAAYIFGFFFGRTPLIKLSPKKTWEGFIGASVATITSAFVDLATGWLHCDPGPLFKPESFPLPGWLPW 286 (402)
Q Consensus 207 ~i~~~~~V~~nDt~AY~~G~~fGk~kL~~iSPkKTwEGfIGG~i~t~i~~~i~~~~~~~~c~~~~~~~~~~~~~~~~~~~ 286 (402)
.+..+.+++.+|++||++||.||||+..++||||||||++||++++.+++.+.... .+.
T Consensus 132 ~~~~i~~~~~gD~~A~l~G~~fGk~~~~~~sp~KT~EGsi~~~i~~~i~~~~~~~~---------------------~~~ 190 (259)
T PF01148_consen 132 ALIGILILGIGDSFAYLVGRRFGKHLAPKISPKKTWEGSIAGFISSFIISFLLLYY---------------------LSS 190 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCCCCCHHHHhHHHHHHHHHHHHHHHH---------------------hcc
Confidence 89999999999999999999999993337999999999999999999987763210 000
Q ss_pred cccccchHHHHHHHHHHHHHHhhhhhhHHHHHhhhcCCCCccCCCCCCCcchhhhhhhhhHHHHHHHHHHHHh
Q 015714 287 KEITILPVQWHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFAYIYHQSF 359 (402)
Q Consensus 287 ~~~~~~~~~~~~l~lgl~~sl~a~fGDL~eS~~KR~~gVKDsG~lIPGHGGiLDR~Dsll~~~~~~y~y~~~f 359 (402)
.. ...++.+++++++++++++||++||.+||++||||||++||||||++||+||+++++|+.|++++.|
T Consensus 191 ~~----~~~~~~~~~~~~~~i~~~~gdl~~S~~KR~~~iKD~g~lipghGg~lDr~d~~l~~~~~~~~~~~~f 259 (259)
T PF01148_consen 191 FF----LSWWQAILISLLASIVEAFGDLFESAIKRDAGIKDSGNLIPGHGGILDRFDSLLFAAPVFYILLKIF 259 (259)
T ss_pred hh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCcCCcccchHhHHHHHHHHHHHHHHC
Confidence 00 1237889999999999999999999999999999999999999999999999999999999999876
No 8
>PRK04032 hypothetical protein; Provisional
Probab=99.95 E-value=1.2e-27 Score=213.63 Aligned_cols=102 Identities=26% Similarity=0.405 Sum_probs=84.8
Q ss_pred Hhhhh-CCCcCccCCCCCCchHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCCCccccccchHHHHHHHHH
Q 015714 224 FGFFF-GRTPLIKLSPKKTWEGFIGASVATITSAFVDLATGWLHCDPGPLFKPESFPLPGWLPWKEITILPVQWHALCLG 302 (402)
Q Consensus 224 ~G~~f-Gk~kL~~iSPkKTwEGfIGG~i~t~i~~~i~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lg 302 (402)
.||.| ++||+ +||||||||++||++++++++.+.. ++ ++... . ..++++++|
T Consensus 22 ~g~~~~dg~~i--iSP~KTwEG~iGGv~~~~l~~~~~~---~~------------------~~~~~---~-~~~~~~~~g 74 (159)
T PRK04032 22 FGKTFVDGRRI--LGDGKTWRGLIGGILFGTLVGLIQN---LL------------------VPAYI---G-ALGVAIILA 74 (159)
T ss_pred CCCcCCCCCee--CCCCCcHHHhHHHHHHHHHHHHHHH---HH------------------Hccch---h-HHHHHHHHH
Confidence 47888 66677 9999999999999999999887731 11 01000 0 125688999
Q ss_pred HHHHHhhhhhhHHHHHhhhcCCCCccCCCCCCCcchhhhhhhhhHHHHHHHHHHH
Q 015714 303 LFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFAYIYHQ 357 (402)
Q Consensus 303 l~~sl~a~fGDL~eS~~KR~~gVKDsG~lIPGHGGiLDR~Dsll~~~~~~y~y~~ 357 (402)
++++++||+|||+||++||++|||| |+.+| +|||+||+++++|+.|++..
T Consensus 75 ~li~v~~~~GDL~eS~iKR~~gVKD-g~~iP----iLDRiDsll~a~p~~~l~~~ 124 (159)
T PRK04032 75 FLLSFGALLGDMLGSFIKRRLGLER-GAPAP----LLDQLDFVVGALLFAYLVAP 124 (159)
T ss_pred HHHHHHHHHhhHHHHHHhhccCCCC-cCccc----chhhhHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999 99999 99999999999999999884
No 9
>PF01864 DUF46: Putative integral membrane protein DUF46; InterPro: IPR002726 This archaebacterial protein has no known function. It contains several predicted transmembrane regions, suggesting it is an integral membrane protein.
Probab=99.23 E-value=5.3e-11 Score=108.75 Aligned_cols=106 Identities=24% Similarity=0.388 Sum_probs=78.6
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCCCccccccchHHHHHHHHHHHHHHhhhhhhHH
Q 015714 236 LSPKKTWEGFIGASVATITSAFVDLATGWLHCDPGPLFKPESFPLPGWLPWKEITILPVQWHALCLGLFASIIAPFGGFF 315 (402)
Q Consensus 236 iSPkKTwEGfIGG~i~t~i~~~i~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lgl~~sl~a~fGDL~ 315 (402)
+-++|||||+++|.+++++++.+.. ++. ..+.. . ........+.+.+|+..++.+..||+.
T Consensus 44 lGdgKTwrG~i~gvl~g~l~g~i~~---~l~-~~~~~---------~------~~~~~~~~~~~~~g~ll~~gamlGDl~ 104 (175)
T PF01864_consen 44 LGDGKTWRGFIGGVLAGTLVGIIQG---LLL-PLSIF---------A------LYFYGSLFFNLLLGFLLGLGAMLGDLP 104 (175)
T ss_pred cCCCCeEEeeeHHHHHHHHHHHHHH---HHh-hhccc---------c------cccccchHHHHHHHHHHHHHHHHhHHH
Confidence 7799999999999999999988742 111 00000 0 001111246778999999999999999
Q ss_pred HHHhhhcCCCCccCCCCCCCcchhhhhhhhhHHHHHHHHHHHHhhcCCCCCHHHHHH
Q 015714 316 ASGFKRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFAYIYHQSFIVPQSFRVEMILE 372 (402)
Q Consensus 316 eS~~KR~~gVKDsG~lIPGHGGiLDR~Dsll~~~~~~y~y~~~fi~~~~~~~~~~~~ 372 (402)
.|.+||..|++. |.-.| ++|++|+.+.+..+.+++. .++.+.++-
T Consensus 105 ~SFIKRRlgi~~-G~~ap----~lDQldf~lgall~~~~~~-------~~~~~~i~~ 149 (175)
T PF01864_consen 105 GSFIKRRLGIPR-GAPAP----GLDQLDFVLGALLLLYLFA-------PLSLPIIII 149 (175)
T ss_pred HHHHHHhcCCCC-CCcCc----cchhHHHHHHHHHHHHHHH-------hCCHHHHHh
Confidence 999999999996 77788 8999999999888887754 455655444
No 10
>KOG4453 consensus Predicted ER membrane protein [Function unknown]
Probab=97.30 E-value=0.00041 Score=65.48 Aligned_cols=48 Identities=29% Similarity=0.220 Sum_probs=42.1
Q ss_pred HHHHHHHhhHHHHHHhhhhCCCcCccCCCCCCchHHHHHHHHHHHHHHHH
Q 015714 210 PASLIVINDIAAYIFGFFFGRTPLIKLSPKKTWEGFIGASVATITSAFVD 259 (402)
Q Consensus 210 ~~~~V~~nDt~AY~~G~~fGk~kL~~iSPkKTwEGfIGG~i~t~i~~~i~ 259 (402)
..++.|| |+.|=.+||.||+.|. ++.|||+|.|.||.+.++++.++++
T Consensus 162 ~~Llswc-Dt~AdtvGRKfG~~tp-k~aknKSlAGSIgaft~Gvf~c~vy 209 (269)
T KOG4453|consen 162 ISLLSWC-DTIADTVGRKFGSTTP-KYAKNKSLAGSIGAFTFGVFICIVY 209 (269)
T ss_pred HHHHHHh-hhHHHHHhhhccccCC-CcCCCccccchHHHHHHHHHHHHHH
Confidence 3356687 9999999999999886 4899999999999999999988774
No 11
>COG0170 SEC59 Dolichol kinase [Lipid metabolism]
Probab=97.23 E-value=0.001 Score=63.18 Aligned_cols=45 Identities=27% Similarity=0.339 Sum_probs=39.3
Q ss_pred HHHHhhHHHHHHhhhhCCCcCccCCCCCCchHHHHHHHHHHHHHHH
Q 015714 213 LIVINDIAAYIFGFFFGRTPLIKLSPKKTWEGFIGASVATITSAFV 258 (402)
Q Consensus 213 ~V~~nDt~AY~~G~~fGk~kL~~iSPkKTwEGfIGG~i~t~i~~~i 258 (402)
+.-..|..|=++|+.+||||. +.++|||+||.+++++++.++..+
T Consensus 122 ~l~~GD~lAsiiG~~~G~~~~-~~~~~KSleGSla~fi~~~l~~~~ 166 (216)
T COG0170 122 VLALGDGLASIIGKRYGRHKR-ILGNGKSLEGSLAFFIASFLVLLV 166 (216)
T ss_pred HHHHhhHHHHHhCcccCcccc-ccCCCCchhhhHHHHHHHHHHHHH
Confidence 445779999999999999933 499999999999999999988765
No 12
>KOG2468 consensus Dolichol kinase [Lipid transport and metabolism]
Probab=93.95 E-value=0.055 Score=56.11 Aligned_cols=43 Identities=30% Similarity=0.373 Sum_probs=38.4
Q ss_pred HHHhhHHHHHHhhhhCCCcCccCCCCCCchHHHHHHHHHHHHHHH
Q 015714 214 IVINDIAAYIFGFFFGRTPLIKLSPKKTWEGFIGASVATITSAFV 258 (402)
Q Consensus 214 V~~nDt~AY~~G~~fGk~kL~~iSPkKTwEGfIGG~i~t~i~~~i 258 (402)
+=+-|+.|-++|+.+||++-.+- |||.||.+.++++..++.++
T Consensus 419 lGiGDTmASiiG~r~G~~RW~~T--kKTlEGT~Afivs~~iv~~l 461 (510)
T KOG2468|consen 419 LGIGDTMASIIGKRYGRIRWSGT--KKTLEGTLAFIVSSFIVCLL 461 (510)
T ss_pred eccchHHHHHHhhhhcceecCCC--cceeehhhHHHHHHHHHHHH
Confidence 34679999999999999998866 99999999999999988766
No 13
>KOG1440 consensus CDP-diacylglycerol synthase [Lipid transport and metabolism]
Probab=65.86 E-value=1.8e+02 Score=30.54 Aligned_cols=41 Identities=20% Similarity=0.041 Sum_probs=34.7
Q ss_pred HHHHHHHHhhHHHHHHhhhhCCCcCccCCCCCCchHHHHHH
Q 015714 209 LPASLIVINDIAAYIFGFFFGRTPLIKLSPKKTWEGFIGAS 249 (402)
Q Consensus 209 ~~~~~V~~nDt~AY~~G~~fGk~kL~~iSPkKTwEGfIGG~ 249 (402)
+.+.-|.++|+++-.-++-+++++....+|||+||+..-++
T Consensus 272 i~~s~vL~~~~~~~cp~~d~~t~~~~~c~p~~~F~~~~y~l 312 (432)
T KOG1440|consen 272 ILFSYVLGHYTFFTCPVKDFSTTPLLSCEPKPLFEPQTYGL 312 (432)
T ss_pred HHHHHHhccCeEEEecccccCCCCccccCcccccCcceecC
Confidence 34455889999999999999999977999999999976654
No 14
>COG1836 Predicted membrane protein [Function unknown]
Probab=60.38 E-value=51 Score=31.97 Aligned_cols=47 Identities=19% Similarity=0.291 Sum_probs=37.7
Q ss_pred HHHHhhHHHHHHhhhhCCCcC----c-cCCCC----CCchHHHHHHHHHHHHHHHH
Q 015714 213 LIVINDIAAYIFGFFFGRTPL----I-KLSPK----KTWEGFIGASVATITSAFVD 259 (402)
Q Consensus 213 ~V~~nDt~AY~~G~~fGk~kL----~-~iSPk----KTwEGfIGG~i~t~i~~~i~ 259 (402)
.+..+||+|-=.|+.+||+|- + ++-|+ =|++|-+.|++++.+.+.+.
T Consensus 129 Ata~aDT~ASEiG~~~~~~p~lITtfkrV~~Gt~GaVS~~GelAav~Ga~iIal~~ 184 (247)
T COG1836 129 ATANADTLASEIGKAYGKRPRLITTFKRVEPGTSGAVSLVGELAAVAGAFIIALLS 184 (247)
T ss_pred HHHhhhHHHHHHhHhhCCCeEEEEeeeEcCCCCCCccchhhhHHHHHHHHHHHHHH
Confidence 366889999999999999873 1 35444 58999999999999888763
No 15
>TIGR00994 3a0901s05TIC20 chloroplast protein import component, Tic20 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic20 protein.
Probab=53.98 E-value=39 Score=33.14 Aligned_cols=62 Identities=23% Similarity=0.185 Sum_probs=36.2
Q ss_pred CCCCCCccchhcccCCCCCCccccccCCCccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 015714 6 NTSAPTTPRLRHRRRSNEAIPDATKANGSHLLVHDRNKYKSFLVRAYSTVWMIAGFVLIVYMG 68 (402)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~R~is~~vli~~~i~ii~~G 68 (402)
|.-.++-|.+..+|++++.++.+ +.+-+.---++-.+|.+++.|+.+.+..+.-..-.+-.|
T Consensus 75 ~~~~~~~p~~~~~~~~~~~pra~-~~~~~~~~~p~~~~kp~~w~RilA~LpYLLPL~dal~fg 136 (267)
T TIGR00994 75 NGLPPTAPGLPTHRRSIEPPRAA-KDDFSKFRFPPMTEKPRWWWRTLACVPYLIPLHISWMYA 136 (267)
T ss_pred CCCcccCCcchhccCCCCCcchh-cccccccCCCccccCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 33345556666677777766655 333333333444566778899998887654444444444
No 16
>PF01940 DUF92: Integral membrane protein DUF92; InterPro: IPR002794 Many members of this family have no known function and are predicted to be integral membrane proteins.; GO: 0016021 integral to membrane
Probab=52.79 E-value=1.2e+02 Score=29.05 Aligned_cols=48 Identities=17% Similarity=0.192 Sum_probs=38.0
Q ss_pred HHHHHhhHHHHHHhhhhCCCcCc-----cCCCC----CCchHHHHHHHHHHHHHHHH
Q 015714 212 SLIVINDIAAYIFGFFFGRTPLI-----KLSPK----KTWEGFIGASVATITSAFVD 259 (402)
Q Consensus 212 ~~V~~nDt~AY~~G~~fGk~kL~-----~iSPk----KTwEGfIGG~i~t~i~~~i~ 259 (402)
...-..||.|==.|...+++|.. ++.|+ =|++|.+.|+.++.+++...
T Consensus 114 ~A~a~aDTwASEiG~ls~~~P~lItt~k~V~~Gt~GgVS~lGt~as~~Ga~~Ia~~~ 170 (226)
T PF01940_consen 114 IAAANADTWASEIGVLSKGPPRLITTFKRVPPGTSGGVSLLGTLASLAGALLIALVA 170 (226)
T ss_pred HHHHhhhHHHHhhhhhcCCCCeEeeCCcCCCCCCCCeechHHHHHHHHHHHHHHHHH
Confidence 34568899999999999988742 24443 58999999999999988763
No 17
>TIGR00836 amt ammonium transporter. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf.
Probab=52.39 E-value=14 Score=38.50 Aligned_cols=38 Identities=34% Similarity=0.587 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHhhhcCCCCccCCCCCCCc
Q 015714 296 WHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHG 336 (402)
Q Consensus 296 ~~~l~lgl~~sl~a~fGDL~eS~~KR~~gVKDsG~lIPGHG 336 (402)
+.++++|++++++..+|- ..+||..++-|.-+.+|=||
T Consensus 280 ~~A~viG~iag~~~~~~~---~~l~~~~~iDD~~~~~~vHg 317 (403)
T TIGR00836 280 WGAIIIGLVAGVLCYLAV---SKLKKKLKIDDPLDAFAVHG 317 (403)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHcCCCCCcccchhhh
Confidence 678999999999988775 34788899999999999994
No 18
>PRK10666 ammonium transporter; Provisional
Probab=50.29 E-value=12 Score=39.43 Aligned_cols=38 Identities=29% Similarity=0.396 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHhhhcCCCCccCCCCCCCc
Q 015714 296 WHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHG 336 (402)
Q Consensus 296 ~~~l~lgl~~sl~a~fGDL~eS~~KR~~gVKDsG~lIPGHG 336 (402)
+.++++|++++++..+|- ..+||.+++-|--+.+|=||
T Consensus 304 ~~A~iiG~vag~v~~~~~---~~l~~~~~iDD~~~a~~vHg 341 (428)
T PRK10666 304 GGALIIGVVAGLAGLWGV---TMLKRWLRVDDPCDVFGVHG 341 (428)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHhcCCCCCCcCccHhhh
Confidence 678999999999998764 34788899999999999994
No 19
>COG0004 AmtB Ammonia permease [Inorganic ion transport and metabolism]
Probab=45.90 E-value=48 Score=34.59 Aligned_cols=38 Identities=34% Similarity=0.551 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHhhhcCCCCccCCCCCCCc
Q 015714 296 WHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHG 336 (402)
Q Consensus 296 ~~~l~lgl~~sl~a~fGDL~eS~~KR~~gVKDsG~lIPGHG 336 (402)
+.++++|++++++..+ ..+.+|+..|+-|.=+.+|.||
T Consensus 281 ~~A~iiGii~g~i~~~---a~~~lk~~l~~DD~ld~f~vHG 318 (409)
T COG0004 281 WGALIIGLIAGVICYF---AVKLLKKKLGVDDALDVFGVHG 318 (409)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHhcCCCCcccceeccc
Confidence 5688888888877765 5788999999999999999994
No 20
>TIGR03644 marine_trans_1 probable ammonium transporter, marine subtype. Members of this protein family are well conserved subclass of putative ammonimum transporters, belonging to the much broader set of ammonium/methylammonium transporter described by TIGR00836. Species with this transporter tend to be marine bacteria. Partial phylogenetic profiling (PPP) picks a member of this protein family as the single best-scoring protein vs. a reference profile for the marine environment Genome Property for a large number of different query genomes. This finding by PPP suggests that this transporter family represents an important adaptation to the marine environment.
Probab=43.72 E-value=13 Score=38.67 Aligned_cols=37 Identities=27% Similarity=0.336 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHhhhcCCCCccCCCCCCCc
Q 015714 296 WHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHG 336 (402)
Q Consensus 296 ~~~l~lgl~~sl~a~fGDL~eS~~KR~~gVKDsG~lIPGHG 336 (402)
+.++++|++++++..++-- ++|..++-|--+.+|=||
T Consensus 294 ~~A~iiG~iag~v~~~~~~----~~~~~~iDD~~~~~~vHg 330 (404)
T TIGR03644 294 LAATLIGAVGGVIVVFSIV----LLDKLKIDDPVGAISVHG 330 (404)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHhCCCCCCcCchHhhh
Confidence 7899999999999987764 345699999999999994
No 21
>TIGR00297 conserved hypothetical protein TIGR00297.
Probab=38.56 E-value=2.5e+02 Score=27.22 Aligned_cols=47 Identities=21% Similarity=0.393 Sum_probs=36.9
Q ss_pred HHHHHhhHHHHHHhhhhCCCcC-c----cCCC----CCCchHHHHHHHHHHHHHHH
Q 015714 212 SLIVINDIAAYIFGFFFGRTPL-I----KLSP----KKTWEGFIGASVATITSAFV 258 (402)
Q Consensus 212 ~~V~~nDt~AY~~G~~fGk~kL-~----~iSP----kKTwEGfIGG~i~t~i~~~i 258 (402)
...-..||.|==.|+..+|+|. + ++.| .=|+||.+.+++++.+++..
T Consensus 119 ~A~a~aDT~ASEiG~ls~~~p~lItt~k~V~~GT~GgVS~~Gt~As~~Ga~~I~~~ 174 (237)
T TIGR00297 119 VATALSDTMASEIGKAYGKNPRLITTLQRVEPGTDGAISVEGTLAGFAGALAIALL 174 (237)
T ss_pred HHHHHcchHHHhhhhccCCCCeEeecCccCCCCCCCcccHHHHHHHHHHHHHHHHH
Confidence 3456789999999999999773 1 2544 45899999999999988765
No 22
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=35.05 E-value=1.4e+02 Score=21.92 Aligned_cols=41 Identities=12% Similarity=0.096 Sum_probs=25.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 015714 43 KYKSFLVRAYSTVWMIAGFVLIVYMGHLYITAMVVVIQIFMA 84 (402)
Q Consensus 43 ~~~~l~~R~is~~vli~~~i~ii~~G~~~~~~lv~~i~~~~~ 84 (402)
-+++.+-|++.+++...+.++.+..|-+ -+++++++..+++
T Consensus 3 ~~~~~~~~iiG~~~G~ila~l~l~~GF~-~tl~i~~~~~iG~ 43 (51)
T PF10031_consen 3 FWKNHRGKIIGGLIGLILALLILTFGFW-KTLFILLFAAIGY 43 (51)
T ss_pred HHHHCcchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 4667778888888777666666666644 3344444444443
No 23
>PRK02868 hypothetical protein; Provisional
Probab=34.52 E-value=72 Score=31.08 Aligned_cols=19 Identities=21% Similarity=0.321 Sum_probs=14.9
Q ss_pred HHHHHhcCCHHHHHHHHHH
Q 015714 371 LEQILTALTYEEQKALYMK 389 (402)
Q Consensus 371 ~~~~~~~l~~~~~~~~~~~ 389 (402)
++++.+|||+|||..+++.
T Consensus 60 l~~~v~~ms~eqq~~ll~~ 78 (245)
T PRK02868 60 LFELVQNMSPEQQQILLKA 78 (245)
T ss_pred HHHHHHhCCHHHHHHHHHH
Confidence 4445668999999999874
No 24
>PF09150 Carot_N: Orange carotenoid protein, N-terminal ; InterPro: IPR015233 Carotenoids such as beta-carotene, lycopene, lutein and beta-cryptoxanthine are produced in plants and certain bacteria, algae and fungi, where they function as accessory photosynthetic pigments and as scavengers of oxygen radicals for photoprotection. They are also essential dietary nutrients in animals. Orange carotenoid-binding proteins (OCP) were first identified in cyanobacterial species, where they occur associated with phycobilisome in the cellular thylakoid membrane. These proteins function in photoprotection, and are essential for inhibiting white and blue-green light non-photochemical quenching (NPQ) [, ]. Carotenoids improve the photoprotectant activity by broadening OCP's absorption spectrum and facilitating the dissipation of absorbed energy. OCP acts as a homodimer, and binds one molecule of carotenoid (3'-hydroxyechinenone) and one chloride ion per subunit, where the carotenoid binding site is lined with a striking number of methionine residues. The carotenoid 3'-hydroxyechinenone is not found in higher plants. OCP has two domains: an N-terminal helical domain and a C-terminal domain that resembles a NTF2 (nuclear transport factor 2) domain. OCP can be proteolytically cleaved into a red form (RCP), which lacks 15 residues from the N terminus and approximately 150 residues from the C terminus []. This entry represents the N-terminal domain found predominantly in prokaryotic orange carotenoid proteins and related carotenoid-binding proteins. It adopts an alpha-helical structure consisting of two four-helix bundles [].; GO: 0031404 chloride ion binding, 0016037 light absorption, 0030089 phycobilisome; PDB: 3MG3_B 3MG1_A 3MG2_A 1M98_A.
Probab=33.17 E-value=93 Score=28.31 Aligned_cols=24 Identities=33% Similarity=0.354 Sum_probs=18.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 015714 368 EMILEQILTALTYEEQKALYMKLGE 392 (402)
Q Consensus 368 ~~~~~~~~~~l~~~~~~~~~~~l~~ 392 (402)
+.++++|.. ||.|||.++.+-|-+
T Consensus 59 e~ll~qik~-ms~~EQlq~MrDL~~ 82 (159)
T PF09150_consen 59 EGLLNQIKQ-MSQEEQLQAMRDLAN 82 (159)
T ss_dssp HHHHHHHHC-S-HHHHHHHHHHHHH
T ss_pred HHHHHHHHh-CCHHHHHHHHHHHHh
Confidence 568899975 999999999887644
No 25
>PF10766 DUF2592: Protein of unknown function (DUF2592); InterPro: IPR019702 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae. Some members are annotated as ybhY.
Probab=32.50 E-value=1.6e+02 Score=20.67 Aligned_cols=35 Identities=26% Similarity=0.378 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 015714 49 VRAYSTVWMIAGFVLIVYMGHLYITAMVVVIQIFMARELFNLLRKAH 95 (402)
Q Consensus 49 ~R~is~~vli~~~i~ii~~G~~~~~~lv~~i~~~~~~E~~~l~~~~~ 95 (402)
+-...+++|+|++..++ +|- +-++-|.+|+..+-.
T Consensus 3 kSl~fa~iMVPVvma~i-lgl-----------IyGlGevfN~iS~~G 37 (41)
T PF10766_consen 3 KSLAFAVIMVPVVMALI-LGL-----------IYGLGEVFNLISKIG 37 (41)
T ss_pred HHHHHHHHHHHHHHHHH-HHH-----------HHHHHHHHHHHHhcC
Confidence 34567788888777554 343 346678888876543
No 26
>PRK10847 hypothetical protein; Provisional
Probab=29.27 E-value=38 Score=31.98 Aligned_cols=22 Identities=23% Similarity=0.514 Sum_probs=18.5
Q ss_pred HHHHHhhHHHHHHhhhhCCCcC
Q 015714 212 SLIVINDIAAYIFGFFFGRTPL 233 (402)
Q Consensus 212 ~~V~~nDt~AY~~G~~fGk~kL 233 (402)
.-....|+.+|..||.+|++.+
T Consensus 80 ~Ga~lG~~i~Y~lGr~~G~~~l 101 (219)
T PRK10847 80 IAAIVGDAVNYTIGRLFGEKLF 101 (219)
T ss_pred HHHHHHHHHHHHHHHHhCHHHh
Confidence 3467889999999999998765
No 27
>KOG4753 consensus Predicted membrane protein [Function unknown]
Probab=29.26 E-value=1.6e+02 Score=25.60 Aligned_cols=13 Identities=23% Similarity=0.297 Sum_probs=7.6
Q ss_pred CCCCCCCCCCCcc
Q 015714 1 MQSENNTSAPTTP 13 (402)
Q Consensus 1 ~~~~~~~~~~~~~ 13 (402)
|.+|...++.++|
T Consensus 1 m~p~rdv~~~~~d 13 (124)
T KOG4753|consen 1 MSPERDVGVGTRD 13 (124)
T ss_pred CCCcCcCceeccC
Confidence 4556555666655
No 28
>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix. It has been described as a channel that spans the membrane 11 times [].; PDB: 3B9Z_A 3B9Y_A 3B9W_A 3BHS_A 2B2H_A 2B2J_A 2B2F_A 2B2I_A 2NPG_A 2NUU_E ....
Probab=29.16 E-value=24 Score=36.43 Aligned_cols=38 Identities=34% Similarity=0.519 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHhhhcCCCCccCCCCCCCc
Q 015714 296 WHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHG 336 (402)
Q Consensus 296 ~~~l~lgl~~sl~a~fGDL~eS~~KR~~gVKDsG~lIPGHG 336 (402)
+.++++|++++.+..+|-- .++|..+|.|--+.+|=||
T Consensus 275 ~~A~~iG~iag~i~~~~~~---~l~~~~~iDD~~~~~~vHg 312 (399)
T PF00909_consen 275 WGALLIGAIAGLISYFGVS---WLLKRLKIDDPVGAFAVHG 312 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHTS-HTTGHHHHCH
T ss_pred HHHHHhhhhHhhhhhhhee---cccceeEeccccceEeeee
Confidence 6788999999888777643 6888999999988888884
No 29
>COG4240 Predicted kinase [General function prediction only]
Probab=28.78 E-value=82 Score=30.86 Aligned_cols=67 Identities=12% Similarity=0.084 Sum_probs=41.4
Q ss_pred hhcCCCCccCCCCCCCcchhhhhhhhhH-HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 015714 320 KRAFKIKDFGDSIPGHGGITDRMDCQMV-MAVFAYIYHQSFIVPQSFRVEMILEQILTALTYEEQKALYMKLGEILQ 395 (402)
Q Consensus 320 KR~~gVKDsG~lIPGHGGiLDR~Dsll~-~~~~~y~y~~~fi~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~ 395 (402)
.|+.+-|=. ..-| ++||+||+++ .++=+-..+..=. . .=.+.+..+-+-||+||+.++++..-.+++
T Consensus 199 ~~dvN~kLa-~Y~p----L~~rIdsLillta~din~vy~WRl---Q-qEhkliAr~~kgmsdeqv~efvn~ymrsl~ 266 (300)
T COG4240 199 RADVNDKLA-PYRP----LFDRIDSLILLTAPDINTVYAWRL---Q-QEHKLIARLAKGMSDEQVSEFVNAYMRSLE 266 (300)
T ss_pred HHHHHhhhh-hhHH----HHHHhhheeEecccchHHHHHHHH---H-HHHHHHHHHhccCcHHHHHHHHHHHHHHHH
Confidence 344444433 4455 9999999975 3332222222211 1 123466667788999999999998877764
No 30
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=28.63 E-value=1.7e+02 Score=24.76 Aligned_cols=73 Identities=23% Similarity=0.409 Sum_probs=40.2
Q ss_pred hhhHHHHHhhhcCCCCccCCCCCCCcchhhhhhhhhHHHHHHHHHHHHhh-cCCCCCHHH--------H-------HHHH
Q 015714 311 FGGFFASGFKRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFAYIYHQSFI-VPQSFRVEM--------I-------LEQI 374 (402)
Q Consensus 311 fGDL~eS~~KR~~gVKDsG~lIPGHGGiLDR~Dsll~~~~~~y~y~~~fi-~~~~~~~~~--------~-------~~~~ 374 (402)
+|.+.-+++. .+|+..... |+.- -++++.+.+.+...+.|= .+.+-|+.+ + ++.=
T Consensus 16 ~Gg~~Y~~l~-~~G~d~~~A------Gi~s--q~~lv~glvgW~~sYlfRV~t~~MTy~~Q~k~Ye~a~~~~~~~~lqkR 86 (104)
T PF11460_consen 16 LGGLLYGGLQ-AAGLDSLSA------GIWS--QALLVLGLVGWVSSYLFRVVTGKMTYMQQRKDYEEAVDQLTNEELQKR 86 (104)
T ss_pred HHHHHHHHHH-HcCCCchhh------hHHH--HHHHHHHHHHHHhHHHhhhccCCCcHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4555555555 666654322 2222 235555666665554442 244555532 2 3333
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 015714 375 LTALTYEEQKALYMKLGE 392 (402)
Q Consensus 375 ~~~l~~~~~~~~~~~l~~ 392 (402)
...||+||+.++.+++++
T Consensus 87 le~l~~eE~~~L~~eiee 104 (104)
T PF11460_consen 87 LEELSPEELEALQAEIEE 104 (104)
T ss_pred HHhCCHHHHHHHHHHhcC
Confidence 346999999999888753
No 31
>TIGR01597 PYST-B Plasmodium yoelii subtelomeric family PYST-B. This model represents a paralogous family of Plasmodium yoelii genes preferentially located in the subtelomeric regions of the chromosomes. There are no obvious homologs to these genes in any other organism.
Probab=27.44 E-value=3e+02 Score=26.74 Aligned_cols=35 Identities=14% Similarity=0.126 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 015714 46 SFLVRAYSTVWMIAGFVLIVYMGHLYITAMVVVIQ 80 (402)
Q Consensus 46 ~l~~R~is~~vli~~~i~ii~~G~~~~~~lv~~i~ 80 (402)
..++-+..+++++.+++.++..|..++.++++...
T Consensus 196 ~~~kli~~~l~~i~~~~~i~isG~~~l~~l~i~~~ 230 (255)
T TIGR01597 196 LVKKLIVRCLTFIVIVCSILVSGPVYLLALIIPSL 230 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 33444555666666655566667776555544433
No 32
>PF11283 DUF3084: Protein of unknown function (DUF3084); InterPro: IPR021435 This bacterial family of proteins has no known function.
Probab=26.66 E-value=65 Score=25.93 Aligned_cols=18 Identities=33% Similarity=0.477 Sum_probs=15.9
Q ss_pred HhhhhCCCcCc--cCCCCCC
Q 015714 224 FGFFFGRTPLI--KLSPKKT 241 (402)
Q Consensus 224 ~G~~fGk~kL~--~iSPkKT 241 (402)
.|+..||+++. .+-||.|
T Consensus 23 iG~kvGKkrlslFgLRPr~T 42 (79)
T PF11283_consen 23 IGSKVGKKRLSLFGLRPRYT 42 (79)
T ss_pred HHHHHhHHHhhhhcCCCccc
Confidence 68999999874 8999998
No 33
>PF09335 SNARE_assoc: SNARE associated Golgi protein; InterPro: IPR015414 This is a entry contains SNARE associated Golgi proteins. The yeast member of this family (P36164 from SWISSPROT) localises with the t-SNARE Tlg2 [].
Probab=25.68 E-value=45 Score=27.56 Aligned_cols=23 Identities=35% Similarity=0.634 Sum_probs=18.7
Q ss_pred HHHHHhhHHHHHHhhhhCCCcCc
Q 015714 212 SLIVINDIAAYIFGFFFGRTPLI 234 (402)
Q Consensus 212 ~~V~~nDt~AY~~G~~fGk~kL~ 234 (402)
+-....|..+|..||.+|++.+.
T Consensus 25 ~g~~~g~~~~y~lgr~~~~~~~~ 47 (123)
T PF09335_consen 25 LGAVLGSLLAYLLGRYFGRRRLR 47 (123)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHH
Confidence 34568899999999999976554
No 34
>PF01741 MscL: Large-conductance mechanosensitive channel, MscL; InterPro: IPR001185 Mechanosensitive ion channels (MscL) play a critical role in transducing physical stresses at the cell membrane into an electrochemical response. MscL is a protein which forms a channel organised as a homopentamer, with each subunit containing two transmembrane regions []. Prokaryotes harbor a large-conductance mechanosensitive channel (gene mscL) that opens in response to stretch forces in the membrane lipid bilayer and may participate in the regulation of osmotic pressure changes within the cell [].; GO: 0005216 ion channel activity, 0006810 transport, 0016021 integral to membrane; PDB: 3HZQ_A 2OAR_A.
Probab=25.53 E-value=2.8e+02 Score=24.23 Aligned_cols=81 Identities=14% Similarity=0.213 Sum_probs=38.4
Q ss_pred hhhhHHHHHhhhcCCCCccCC---CCCCCcc--------hhhhhhhhhHHHHHHHHHHHHhhc---CCCCCHHHHHHHHH
Q 015714 310 PFGGFFASGFKRAFKIKDFGD---SIPGHGG--------ITDRMDCQMVMAVFAYIYHQSFIV---PQSFRVEMILEQIL 375 (402)
Q Consensus 310 ~fGDL~eS~~KR~~gVKDsG~---lIPGHGG--------iLDR~Dsll~~~~~~y~y~~~fi~---~~~~~~~~~~~~~~ 375 (402)
...|++...+--..|-.|+++ .++||+| .++.+=..++++.++|+..+.+-+ +.... +. .
T Consensus 34 lV~dii~Pli~~~~g~~~~~~~~~~~~g~~~~~~i~yG~Fl~a~I~FlIiA~vvFlivk~~nk~~~~~~~~-~~-----~ 107 (128)
T PF01741_consen 34 LVNDIIMPLIGLLFGGPDFSDLFIVLSGPAGAVVIPYGAFLNALINFLIIAFVVFLIVKPINKLKKKEEKE-EA-----E 107 (128)
T ss_dssp HHHHCHHHHHHHSCS-S--EE----TTS-SS-EEE-HCHHHHHHHHHHHHHHHHHHCHHHHHHCHHTT-S----------
T ss_pred HHHHHHHHHHHHhcCCCCcccceeeeeccCCcceeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-cc-----C
Confidence 334555555555455555544 4567655 444444555555555555533221 11111 00 0
Q ss_pred hcCCHHHHHHHHHHHHHHHhhc
Q 015714 376 TALTYEEQKALYMKLGEILQER 397 (402)
Q Consensus 376 ~~l~~~~~~~~~~~l~~~~~~~ 397 (402)
.=..+++.++++++++.+.++
T Consensus 108 -~~~~~~~~~ll~eIrdlL~~q 128 (128)
T PF01741_consen 108 -APAPKTCEELLTEIRDLLKKQ 128 (128)
T ss_dssp -H--HHHHHHHHHHHHHHHHH-
T ss_pred -CCCCCchHHHHHHHHHHHhcC
Confidence 012457888999999988764
No 35
>PF04868 PDE6_gamma: Retinal cGMP phosphodiesterase, gamma subunit; InterPro: IPR006952 Retinal rod and cone cGMP phosphodiesterases function as the effector enzymes in the vertebrate visual transduction cascade. This family represents the inhibitory gamma subunit [], which is also expressed outside retinal tissues and has been shown to interact with the G-protein-coupled receptor kinase 2 signalling system to regulate the epidermal growth factor- and thrombin-dependent stimulation of p42/p44 mitogen-activated protein kinase in human embryonic kidney 293 cells [].; GO: 0004114 3',5'-cyclic-nucleotide phosphodiesterase activity, 0030553 cGMP binding, 0007601 visual perception; PDB: 2JU4_A 1FQJ_C 3JWR_D.
Probab=23.90 E-value=48 Score=26.47 Aligned_cols=19 Identities=42% Similarity=0.788 Sum_probs=13.1
Q ss_pred CCCCccCCCCCCCcchhhh
Q 015714 323 FKIKDFGDSIPGHGGITDR 341 (402)
Q Consensus 323 ~gVKDsG~lIPGHGGiLDR 341 (402)
-|||-||+-|||+-|+-+-
T Consensus 41 kGvkGf~~~ipgmeglg~d 59 (83)
T PF04868_consen 41 KGVKGFGDDIPGMEGLGTD 59 (83)
T ss_dssp SSSS--TTSSSSSTT-SHH
T ss_pred CcccCccCcCcccccccCc
Confidence 4899999999999998543
No 36
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=22.50 E-value=4.5e+02 Score=21.77 Aligned_cols=37 Identities=24% Similarity=0.346 Sum_probs=27.9
Q ss_pred HHHH-HHHHHHHHhhhhhhHHHHHhhhcCCCCccCCCCCC
Q 015714 296 WHAL-CLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPG 334 (402)
Q Consensus 296 ~~~l-~lgl~~sl~a~fGDL~eS~~KR~~gVKDsG~lIPG 334 (402)
|-++ +++++.+++..+|=++-|+--|.++. +++.+|+
T Consensus 44 wRalSii~FI~giil~lG~~i~s~ygr~C~~--s~~~~~~ 81 (92)
T PF05767_consen 44 WRALSIICFILGIILTLGIVIFSMYGRYCRP--SSKVIDN 81 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--CCCcCcc
Confidence 4444 47788899999999999999888866 4555554
No 37
>KOG0682 consensus Ammonia permease [Inorganic ion transport and metabolism]
Probab=22.05 E-value=49 Score=35.32 Aligned_cols=37 Identities=30% Similarity=0.538 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHhhhcCCCCccCCCCCCCc
Q 015714 296 WHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHG 336 (402)
Q Consensus 296 ~~~l~lgl~~sl~a~fGDL~eS~~KR~~gVKDsG~lIPGHG 336 (402)
|++++.|++++++. +...-+|-..+|-|-=+..|=||
T Consensus 312 WaAiviG~va~~~~----~~~~kL~~~lkvDDpl~~f~~Hg 348 (500)
T KOG0682|consen 312 WAAIVIGAVAGLVC----NAANKLKERLKVDDPLDAFAVHG 348 (500)
T ss_pred HHHHHHhHHHHHHH----HHHHHHHHHhcCCcHHHHHHHhc
Confidence 78888888888664 56888899999999766666664
Done!