Query 015714
Match_columns 402
No_of_seqs 134 out of 1468
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 17:24:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015714.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015714hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zo4_A Metallo-beta-lactamase 41.6 37 0.0013 31.4 5.8 69 310-381 210-283 (317)
2 3b9w_A Ammonium transporter fa 41.2 25 0.00085 35.3 4.7 41 296-336 260-301 (407)
3 2l9b_A MRNA 3'-END-processing 38.1 45 0.0015 27.3 4.9 32 366-397 37-68 (109)
4 1fqj_C Retinal ROD rhodopsin-s 36.5 12 0.00041 24.9 1.0 17 324-340 1-17 (42)
5 3hd6_A Ammonium transporter RH 31.5 29 0.00099 35.7 3.4 45 296-340 309-356 (490)
6 2b2h_A AMT-1, ammonium transpo 29.6 34 0.0012 34.2 3.5 36 296-335 270-305 (399)
7 3hnn_A Putative diflavin flavo 28.1 30 0.001 31.4 2.7 35 305-340 202-236 (262)
8 4dik_A Flavoprotein; TM0755, e 23.9 32 0.0011 34.2 2.2 38 302-340 208-245 (410)
9 4ad9_A Lactb2, beta-lactamase- 22.7 78 0.0027 28.8 4.5 71 311-383 178-255 (289)
10 1zav_U 50S ribosomal protein L 21.4 1.5E+02 0.0053 18.4 4.2 27 366-393 2-28 (30)
11 2ju4_A GMP-PDE gamma, retinal 21.3 38 0.0013 26.0 1.6 18 323-340 45-62 (87)
12 3mg1_A OCP, orange carotenoid 20.9 1.3E+02 0.0045 29.0 5.6 24 368-392 65-88 (323)
13 1u7g_A Probable ammonium trans 20.9 58 0.002 32.3 3.3 37 296-335 282-318 (385)
No 1
>2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus thermophilus}
Probab=41.58 E-value=37 Score=31.44 Aligned_cols=69 Identities=12% Similarity=0.029 Sum_probs=34.5
Q ss_pred hhhhHHHHHhhhcCCCCccCCCCCCCcchhhh----hhhhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHh-cCCHH
Q 015714 310 PFGGFFASGFKRAFKIKDFGDSIPGHGGITDR----MDCQMVMAVFAYIYHQSFIVPQSFRVEMILEQILT-ALTYE 381 (402)
Q Consensus 310 ~fGDL~eS~~KR~~gVKDsG~lIPGHGGiLDR----~Dsll~~~~~~y~y~~~fi~~~~~~~~~~~~~~~~-~l~~~ 381 (402)
...+..+|. +|-.+. |...++||||+..+. ++..+----=.+=.+.-.+ ....|++++.+.+.. .+++.
T Consensus 210 ~~~~~~~sl-~~l~~l-~~~~v~pgHg~~~~~~~~~i~~~~~~~~~~~~~i~~~l-~~~~t~~ei~~~~~~~~~~~~ 283 (317)
T 2zo4_A 210 PLKDFLRSL-DRLADL-GARVAYAGHFGPIADVRQRAEELKAHHQARLEALLALL-DGPKTAWELSLHLFPQELDPA 283 (317)
T ss_dssp HHHHHHHHH-HHHHTS-CCSEEEESSSSCBSCHHHHHHHHHHHHHHHHHHHHHHC-SSCBCHHHHHHHHCC------
T ss_pred hHHHHHHHH-HHHhcC-CCCEEECCCCCccCCHHHHHHHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHhhcccChh
Confidence 455666664 555555 457899999988753 3333211100001111122 455778888887754 45443
No 2
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=41.22 E-value=25 Score=35.26 Aligned_cols=41 Identities=24% Similarity=0.253 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhhhhhh-HHHHHhhhcCCCCccCCCCCCCc
Q 015714 296 WHALCLGLFASIIAPFGG-FFASGFKRAFKIKDFGDSIPGHG 336 (402)
Q Consensus 296 ~~~l~lgl~~sl~a~fGD-L~eS~~KR~~gVKDsG~lIPGHG 336 (402)
+.++++|++++++..+|- ++...+||..|+-|.=+.+|=||
T Consensus 260 ~~A~iIG~iaG~i~~~~~~~l~~~l~~~l~iDD~l~a~~vHg 301 (407)
T 3b9w_A 260 VGAFVIGLLGGAISVVGFVFIQPMLESKAKTIDTCGVHNLHG 301 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHSCCCCTTCHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCeecch
Confidence 679999999999999986 45667889999999999999994
No 3
>2l9b_A MRNA 3'-END-processing protein RNA15; 3' END mRNA maturation, transcription; NMR {Saccharomyces cerevisiae}
Probab=38.15 E-value=45 Score=27.30 Aligned_cols=32 Identities=19% Similarity=0.159 Sum_probs=26.0
Q ss_pred CHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhc
Q 015714 366 RVEMILEQILTALTYEEQKALYMKLGEILQER 397 (402)
Q Consensus 366 ~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ 397 (402)
++++.+...+..|+++|..+++.+++++..+.
T Consensus 37 ap~~~IS~~Laslpp~Ql~eiL~qmK~~~~~n 68 (109)
T 2l9b_A 37 TPAMMISSELAKKPKEVQLKFLQKFQEWTRAH 68 (109)
T ss_dssp CHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC
Confidence 47745555666799999999999999998764
No 4
>1fqj_C Retinal ROD rhodopsin-sensitive CGMP 3',5'- cyclic phosphodiesterase gamma-subunit...; RGS9, transducin, effector, pdegamma, G protein; HET: GDP; 2.02A {Bos taurus} SCOP: j.51.1.1
Probab=36.47 E-value=12 Score=24.93 Aligned_cols=17 Identities=41% Similarity=0.917 Sum_probs=11.1
Q ss_pred CCCccCCCCCCCcchhh
Q 015714 324 KIKDFGDSIPGHGGITD 340 (402)
Q Consensus 324 gVKDsG~lIPGHGGiLD 340 (402)
|+|-+|+-||||=|.--
T Consensus 1 gv~gf~~~ipGmeglgt 17 (42)
T 1fqj_C 1 GVQGFGDDIPGMEGLGT 17 (42)
T ss_dssp ----CTTCCSCCTTCCH
T ss_pred CCcccccccccccccCC
Confidence 68999999999988654
No 5
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=31.47 E-value=29 Score=35.65 Aligned_cols=45 Identities=24% Similarity=0.383 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHhhhhhh-HHHHHhhhcCCCCccCCCCCCC--cchhh
Q 015714 296 WHALCLGLFASIIAPFGG-FFASGFKRAFKIKDFGDSIPGH--GGITD 340 (402)
Q Consensus 296 ~~~l~lgl~~sl~a~fGD-L~eS~~KR~~gVKDsG~lIPGH--GGiLD 340 (402)
+.++++|+++++++.+|- ++...+|+..|+-|.=+.+|=| ||++-
T Consensus 309 ~~AliIG~iaG~i~~~~~~~l~~~l~~kl~iDD~lgv~~vHGv~Gi~G 356 (490)
T 3hd6_A 309 YGALIIGFVCGIISTLGFVYLTPFLESRLHIQDTCGINNLHGIPGIIG 356 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCTTCHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHCCCCccccchHHhhHHHHHH
Confidence 779999999999999984 4456789999999999999988 45554
No 6
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=29.59 E-value=34 Score=34.20 Aligned_cols=36 Identities=28% Similarity=0.305 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHhhhcCCCCccCCCCCCC
Q 015714 296 WHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGH 335 (402)
Q Consensus 296 ~~~l~lgl~~sl~a~fGDL~eS~~KR~~gVKDsG~lIPGH 335 (402)
+.++++|++++++..++- .+|+..|+-|.=+.+|=|
T Consensus 270 ~~A~iiG~iag~i~~~~~----~l~~kl~iDD~l~a~~vH 305 (399)
T 2b2h_A 270 KGAIVIGLVAGIVCYLAM----DFRIKKKIDESLDAWAIH 305 (399)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHTTCCCTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHcCCCCCCCceecc
Confidence 679999999999999886 688999999998888888
No 7
>3hnn_A Putative diflavin flavoprotein A 5; PSI-2, protein structure initiative, northeast structural GE consortium, NESG, NSR435A, DFA5, electron transport; 1.80A {Nostoc SP} PDB: 4fek_A
Probab=28.06 E-value=30 Score=31.45 Aligned_cols=35 Identities=14% Similarity=0.285 Sum_probs=26.2
Q ss_pred HHHhhhhhhHHHHHhhhcCCCCccCCCCCCCcchhh
Q 015714 305 ASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITD 340 (402)
Q Consensus 305 ~sl~a~fGDL~eS~~KR~~gVKDsG~lIPGHGGiLD 340 (402)
..+.++...-....++|-... |.-.++||||.+.+
T Consensus 202 ~~~~~~~~~~~~~sl~~l~~L-~~~~i~PgHG~~~~ 236 (262)
T 3hnn_A 202 NCLMAPHAIHVEAALEKISDL-QVRLYAVGHGPLVR 236 (262)
T ss_dssp HHHTGGGHHHHHHHHHHHTTS-CCSEEEESSSSEES
T ss_pred HHHhhhhHHHHHHHHHHHhCC-CCCEEECCCCcccc
Confidence 345566666667778888777 45889999999986
No 8
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=23.93 E-value=32 Score=34.18 Aligned_cols=38 Identities=18% Similarity=0.429 Sum_probs=32.5
Q ss_pred HHHHHHhhhhhhHHHHHhhhcCCCCccCCCCCCCcchhh
Q 015714 302 GLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITD 340 (402)
Q Consensus 302 gl~~sl~a~fGDL~eS~~KR~~gVKDsG~lIPGHGGiLD 340 (402)
--...+.++++..+..++||-.+. |-.-+.||||-+..
T Consensus 208 ~yy~~i~~p~~~~v~~~L~kl~~L-di~~I~P~HGpi~r 245 (410)
T 4dik_A 208 KYIVTVIGHYKNYILEGAEKLSSL-KIKALLPGHGLIWK 245 (410)
T ss_dssp HHHHHHHGGGHHHHHHHHHHHHTS-CCSEEEESSSCBBS
T ss_pred HHHHhhccchHHHHHHHHHHHhCC-CCCEEecCCcchhh
Confidence 456788899999999999998777 56789999999983
No 9
>4ad9_A Lactb2, beta-lactamase-like protein 2; hydrolase, metallo-beta lactamase, mitochondria; 2.60A {Homo sapiens}
Probab=22.68 E-value=78 Score=28.84 Aligned_cols=71 Identities=18% Similarity=0.206 Sum_probs=35.8
Q ss_pred hhhHHHHHhhhcCCCCccCCCCCCCcchhh----hhhhhhHHHHHHHHHHHHhhc---CCCCCHHHHHHHHHhcCCHHHH
Q 015714 311 FGGFFASGFKRAFKIKDFGDSIPGHGGITD----RMDCQMVMAVFAYIYHQSFIV---PQSFRVEMILEQILTALTYEEQ 383 (402)
Q Consensus 311 fGDL~eS~~KR~~gVKDsG~lIPGHGGiLD----R~Dsll~~~~~~y~y~~~fi~---~~~~~~~~~~~~~~~~l~~~~~ 383 (402)
..+..+|. +|-...++ ..++||||+..+ |++.++=-----+-.+...+. ....|+.++.+.+...++++..
T Consensus 178 ~~~~~~sl-~~l~~l~~-~~v~pgHg~~~~~~~~~i~~~~~~~~~r~~~i~~~l~~~~~~~~t~~ei~~~~~~~~p~~l~ 255 (289)
T 4ad9_A 178 LYDYMNSL-KELLKIKA-DIIYPGHGPVIHNAEAKIQQYISHRNIREQQILTLFRENFEKSFTVMELVKIIYKNTPENLH 255 (289)
T ss_dssp HHHHHHHH-HHHHHHTC-SEEEESSSSCBSCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCBCHHHHHHHHTTTSCGGGH
T ss_pred HHHHHHHH-HHHHcCCC-CEEEeCCCChhcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCHHHH
Confidence 34444443 44333333 389999998864 344333211111111111221 2457788888877665665443
No 10
>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C
Probab=21.40 E-value=1.5e+02 Score=18.39 Aligned_cols=27 Identities=33% Similarity=0.381 Sum_probs=22.4
Q ss_pred CHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 015714 366 RVEMILEQILTALTYEEQKALYMKLGEI 393 (402)
Q Consensus 366 ~~~~~~~~~~~~l~~~~~~~~~~~l~~~ 393 (402)
+.++++..+.. ||.-|-.++++.|++-
T Consensus 2 ~~~~iie~i~~-lTvlEl~eLvk~lEe~ 28 (30)
T 1zav_U 2 TIDEIIEAIEK-LTVSELAELVKKLEDK 28 (30)
T ss_dssp CHHHHHHHHHH-SBHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence 46789999985 9999999999888763
No 11
>2ju4_A GMP-PDE gamma, retinal ROD rhodopsin-sensitive CGMP 3',5'-cyclic phosphodiesterase subunit gamma...; intrinsic disordered protein; HET: RCY; NMR {Bos taurus}
Probab=21.34 E-value=38 Score=25.99 Aligned_cols=18 Identities=33% Similarity=0.589 Sum_probs=13.6
Q ss_pred CCCCccCCCCCCCcchhh
Q 015714 323 FKIKDFGDSIPGHGGITD 340 (402)
Q Consensus 323 ~gVKDsG~lIPGHGGiLD 340 (402)
-|||-+|+-||||-|+--
T Consensus 45 kGvkGfgddipgmeglgt 62 (87)
T 2ju4_A 45 KGVQGCGDDIPGMEGCGT 62 (87)
T ss_dssp SSSSCCCCSSCSSSSCSH
T ss_pred CCcccccccccccccccC
Confidence 368888888888877643
No 12
>3mg1_A OCP, orange carotenoid protein; carotenoid binding protein, echinone, phycobilisome; HET: ECH; 1.65A {Synechocystis SP} PDB: 3mg2_A* 3mg3_A* 1m98_A*
Probab=20.93 E-value=1.3e+02 Score=28.95 Aligned_cols=24 Identities=21% Similarity=0.199 Sum_probs=19.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 015714 368 EMILEQILTALTYEEQKALYMKLGE 392 (402)
Q Consensus 368 ~~~~~~~~~~l~~~~~~~~~~~l~~ 392 (402)
+.++++|.+ ||.|||.++++-|-+
T Consensus 65 e~ll~qik~-ms~eeQlqvMrDL~~ 88 (323)
T 3mg1_A 65 ENALKEIQA-MGPLQQTQAMCDLAN 88 (323)
T ss_dssp HHHHHHHHH-SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-CCHHHHHHHHHHHHh
Confidence 568999985 999999999887643
No 13
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A
Probab=20.85 E-value=58 Score=32.32 Aligned_cols=37 Identities=27% Similarity=0.336 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHhhhcCCCCccCCCCCCC
Q 015714 296 WHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGH 335 (402)
Q Consensus 296 ~~~l~lgl~~sl~a~fGDL~eS~~KR~~gVKDsG~lIPGH 335 (402)
+.++++|++++++..++-- .+|+..++-|.=+.+|=|
T Consensus 282 ~~A~iiG~iag~i~~~~~~---~l~~~l~iDD~l~a~~vH 318 (385)
T 1u7g_A 282 GGALIIGVVAGLAGLWGVT---MLKRLLRVDDPCDVFGVH 318 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHCSCCGGGHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHH---HHHHhCCCCCCCCCEeec
Confidence 6799999999999887743 378889999988888877
Done!