Query 015714
Match_columns 402
No_of_seqs 134 out of 1468
Neff 6.4
Searched_HMMs 13730
Date Mon Mar 25 17:24:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015714.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/015714hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1zavu1 a.108.1.1 (U:1-30) Rib 62.7 6 0.00044 23.0 4.1 27 366-393 2-28 (30)
2 d2p97a1 d.157.1.12 (A:1-200) H 46.6 2.8 0.00021 35.0 1.1 32 315-346 160-196 (200)
3 d1u7ga_ f.44.1.1 (A:) Ammonium 29.7 11 0.00077 35.2 2.2 38 296-336 280-317 (383)
4 d1vmea2 d.157.1.3 (A:1-250) RO 27.5 12 0.00091 31.2 2.2 34 305-339 199-232 (250)
5 d1ycga2 d.157.1.3 (A:2-250) Ni 24.7 12 0.00086 31.4 1.4 36 304-339 195-231 (249)
6 d1uptb_ a.193.1.1 (B:) Golgi a 23.3 32 0.0023 23.2 3.1 36 356-392 13-48 (58)
7 d2q0ia1 d.157.1.14 (A:1-298) Q 22.9 8.3 0.0006 33.6 -0.0 24 317-340 203-226 (298)
8 d2fbha1 a.4.5.28 (A:8-144) Tra 22.1 39 0.0029 25.4 4.1 29 368-396 105-133 (137)
9 d1t6sa1 a.4.5.60 (A:1-85) Segr 21.6 46 0.0033 23.6 4.1 38 359-396 17-54 (85)
10 d1bk8a_ g.3.7.5 (A:) Antimicro 21.1 6 0.00044 26.0 -1.0 11 238-248 6-16 (50)
11 d1lnwa_ a.4.5.28 (A:) MexR rep 20.5 53 0.0038 24.9 4.6 29 368-396 112-140 (141)
12 d3deua1 a.4.5.28 (A:2-141) Tra 20.5 54 0.0039 24.6 4.6 29 368-396 108-136 (140)
13 d1tlha_ a.150.1.1 (A:) Anti-si 20.2 31 0.0023 25.1 2.7 28 364-392 47-74 (89)
No 1
>d1zavu1 a.108.1.1 (U:1-30) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Thermotoga maritima [TaxId: 2336]}
Probab=62.72 E-value=6 Score=22.97 Aligned_cols=27 Identities=33% Similarity=0.381 Sum_probs=23.6
Q ss_pred CHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 015714 366 RVEMILEQILTALTYEEQKALYMKLGEI 393 (402)
Q Consensus 366 ~~~~~~~~~~~~l~~~~~~~~~~~l~~~ 393 (402)
++++|++.|.+ ||..|-.+++++|.+.
T Consensus 2 ~~eeiv~aiek-ltvaelaelvk~ledk 28 (30)
T d1zavu1 2 TIDEIIEAIEK-LTVSELAELVKKLEDK 28 (30)
T ss_dssp CHHHHHHHHHH-SBHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-hhHHHHHHHHHHHHhh
Confidence 58899999986 9999999999998764
No 2
>d2p97a1 d.157.1.12 (A:1-200) Hypothetical protein Ava3068 {Anabaena variabilis [TaxId: 1172]}
Probab=46.63 E-value=2.8 Score=34.96 Aligned_cols=32 Identities=16% Similarity=0.274 Sum_probs=24.1
Q ss_pred HHHHhhhcCCCCccCCCCCCCcch-----hhhhhhhh
Q 015714 315 FASGFKRAFKIKDFGDSIPGHGGI-----TDRMDCQM 346 (402)
Q Consensus 315 ~eS~~KR~~gVKDsG~lIPGHGGi-----LDR~Dsll 346 (402)
....+||-...+|.-.++||||.. -+|++.++
T Consensus 160 ~~~sl~rl~~l~~~~~i~pgHG~~~~~~~~~rl~~l~ 196 (200)
T d2p97a1 160 VVASVRRLAALEKVEAVLVGDGWSVFRDGRDRLKELV 196 (200)
T ss_dssp HHHHHHHHHTCTTCCEEEESBBCCBCSCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcEEECCCCchHhcCHHHHHHHHH
Confidence 345688888999999999999954 45666543
No 3
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=29.67 E-value=11 Score=35.20 Aligned_cols=38 Identities=29% Similarity=0.417 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHhhhcCCCCccCCCCCCCc
Q 015714 296 WHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHG 336 (402)
Q Consensus 296 ~~~l~lgl~~sl~a~fGDL~eS~~KR~~gVKDsG~lIPGHG 336 (402)
+.++++|++++++..++- ..+||..++-|--+.+|-||
T Consensus 280 ~~A~~iG~i~g~i~~~~~---~~l~~~~~iDD~~~~~~vHg 317 (383)
T d1u7ga_ 280 GGALIIGVVAGLAGLWGV---TMLKRLLRVDDPCDVFGVHG 317 (383)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHCSCCGGGHHHHHH
T ss_pred hhHHHHHhhccHHHHHHH---HHHHhhcccccccceEeehh
Confidence 678999999999998773 45788889999988888884
No 4
>d1vmea2 d.157.1.3 (A:1-250) ROO-like flavoprotein TM0755, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=27.48 E-value=12 Score=31.24 Aligned_cols=34 Identities=21% Similarity=0.475 Sum_probs=23.9
Q ss_pred HHHhhhhhhHHHHHhhhcCCCCccCCCCCCCcchh
Q 015714 305 ASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGIT 339 (402)
Q Consensus 305 ~sl~a~fGDL~eS~~KR~~gVKDsG~lIPGHGGiL 339 (402)
....++.-+-....+||-.+. |...++||||=++
T Consensus 199 ~~~~~~~~~~~~~sl~~l~~l-~~~~I~PGHGpi~ 232 (250)
T d1vmea2 199 VTVIGHYKNYILEGAEKLSSL-KIKALLPGHGLIW 232 (250)
T ss_dssp HHHHGGGHHHHHHHHHHHHTS-CCSEEEESSSCBB
T ss_pred cccccccHHHHHHHHHHHHCC-CCCEEECCCChhH
Confidence 344555556666778886555 5667999999776
No 5
>d1ycga2 d.157.1.3 (A:2-250) Nitric oxide reductase N-terminal domain {Moorella thermoacetica [TaxId: 1525]}
Probab=24.68 E-value=12 Score=31.44 Aligned_cols=36 Identities=28% Similarity=0.470 Sum_probs=25.3
Q ss_pred HHHHhhhhhhHHHHHhhhcCCC-CccCCCCCCCcchh
Q 015714 304 FASIIAPFGGFFASGFKRAFKI-KDFGDSIPGHGGIT 339 (402)
Q Consensus 304 ~~sl~a~fGDL~eS~~KR~~gV-KDsG~lIPGHGGiL 339 (402)
+..+.++..+-+.+.+||-..+ -|-..++||||.++
T Consensus 195 ~~~~~~~~~~~~~~~l~~l~~l~l~~~~i~PgHGpv~ 231 (249)
T d1ycga2 195 YANILMPFSNLITKKLDEIQKINLAIKTIAPSHGIIW 231 (249)
T ss_dssp HHHHTGGGHHHHHHHHHHHHHTTCCCSEEEESSSCBB
T ss_pred chhccccCHHHHHHHHHHHHccCCCCCEEEeCCCchH
Confidence 4455677778888888886443 12345889999987
No 6
>d1uptb_ a.193.1.1 (B:) Golgi autoantigen, golgin-245 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.34 E-value=32 Score=23.17 Aligned_cols=36 Identities=3% Similarity=0.170 Sum_probs=28.5
Q ss_pred HHHhhcCCCCCHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015714 356 HQSFIVPQSFRVEMILEQILTALTYEEQKALYMKLGE 392 (402)
Q Consensus 356 ~~~fi~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 392 (402)
+.++..+++.++.+|+..+++ +++||-..++++=.+
T Consensus 13 feYMmG~E~~tlaKVi~av~k-F~~~Q~q~iL~kE~~ 48 (58)
T d1uptb_ 13 FEYMMGRETKTMAKVITTVLK-FPDDQTQKILEREDA 48 (58)
T ss_dssp HHHHTTSSHHHHHHHHHHHTT-CCHHHHHHHHHHHHH
T ss_pred HHHHcCcchhHHHHHHHHHHh-CCHHHHHHHHHHHhc
Confidence 345556788889999999987 999999998876443
No 7
>d2q0ia1 d.157.1.14 (A:1-298) Quinolone signal response protein PqsE {Pseudomonas aeruginosa [TaxId: 287]}
Probab=22.94 E-value=8.3 Score=33.59 Aligned_cols=24 Identities=29% Similarity=0.620 Sum_probs=17.1
Q ss_pred HHhhhcCCCCccCCCCCCCcchhh
Q 015714 317 SGFKRAFKIKDFGDSIPGHGGITD 340 (402)
Q Consensus 317 S~~KR~~gVKDsG~lIPGHGGiLD 340 (402)
..++|-...+|--.++||||++.+
T Consensus 203 ~sl~~l~~l~~~~~i~PgHG~~~~ 226 (298)
T d2q0ia1 203 ESLERLQRLPTLLQLIPGHGGLLR 226 (298)
T ss_dssp HHHHHHHTSSCCSEEEESSSCEEE
T ss_pred HHHHHHHCCCCCCEEECCCCCccC
Confidence 345776666665568999999874
No 8
>d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=22.13 E-value=39 Score=25.39 Aligned_cols=29 Identities=24% Similarity=0.222 Sum_probs=23.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhh
Q 015714 368 EMILEQILTALTYEEQKALYMKLGEILQE 396 (402)
Q Consensus 368 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~ 396 (402)
..+.+.+...+++||+..+.+.|.+++.+
T Consensus 105 ~~~~~~~~~~l~~~e~~~l~~~l~~l~~~ 133 (137)
T d2fbha1 105 ASVRNDVLTGIDESEQALCQQVLLRILAN 133 (137)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 45666777789999999999988887654
No 9
>d1t6sa1 a.4.5.60 (A:1-85) Segregation and condensation protein B, ScpB {Chlorobium tepidum [TaxId: 1097]}
Probab=21.58 E-value=46 Score=23.56 Aligned_cols=38 Identities=11% Similarity=0.097 Sum_probs=30.9
Q ss_pred hhcCCCCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHhh
Q 015714 359 FIVPQSFRVEMILEQILTALTYEEQKALYMKLGEILQE 396 (402)
Q Consensus 359 fi~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~ 396 (402)
|....++|++++.+.+-...+.++..+.++.|++..++
T Consensus 17 Fas~~Pls~~~L~~~l~~~~~~~~i~~~l~~L~~~y~~ 54 (85)
T d1t6sa1 17 FSSEEPVNLQTLSQITAHKFTPSELQEAVDELNRDYEA 54 (85)
T ss_dssp HHCSSCBCHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHhc
Confidence 45678899999888664458899999999999998865
No 10
>d1bk8a_ g.3.7.5 (A:) Antimicrobial protein 1 (AH-AMP1) {Horse chestnut (Aesculus hippocastanum) [TaxId: 43364]}
Probab=21.11 E-value=6 Score=26.01 Aligned_cols=11 Identities=45% Similarity=1.054 Sum_probs=8.8
Q ss_pred CCCCchHHHHH
Q 015714 238 PKKTWEGFIGA 248 (402)
Q Consensus 238 PkKTwEGfIGG 248 (402)
|.|||.|+-|-
T Consensus 6 ~S~TWsG~Cgn 16 (50)
T d1bk8a_ 6 PSQTWSGNCGN 16 (50)
T ss_dssp CCSSSCSCCCC
T ss_pred CCCceeeccCC
Confidence 78999998763
No 11
>d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]}
Probab=20.47 E-value=53 Score=24.92 Aligned_cols=29 Identities=24% Similarity=0.298 Sum_probs=24.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhh
Q 015714 368 EMILEQILTALTYEEQKALYMKLGEILQE 396 (402)
Q Consensus 368 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~ 396 (402)
....+.+...++++|+..+.+.|++++..
T Consensus 112 ~~~~~~~~~~ls~~e~~~l~~~L~kl~a~ 140 (141)
T d1lnwa_ 112 SRVHDELFAPLTPVEQATLVHLLDQCLAA 140 (141)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Confidence 45666777889999999999999998754
No 12
>d3deua1 a.4.5.28 (A:2-141) Transcriptional regulator SlyA {Salmonella typhimurium [TaxId: 90371]}
Probab=20.45 E-value=54 Score=24.63 Aligned_cols=29 Identities=17% Similarity=0.235 Sum_probs=23.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhh
Q 015714 368 EMILEQILTALTYEEQKALYMKLGEILQE 396 (402)
Q Consensus 368 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~ 396 (402)
....+.+...+++||+..+.+.|+++.+|
T Consensus 108 ~~~~~~~~~~l~~ee~~~~~~~L~~i~~n 136 (140)
T d3deua1 108 HKTRGEILAGISSEEIELLIKLIAKLEHN 136 (140)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 45666777789999999999988887665
No 13
>d1tlha_ a.150.1.1 (A:) Anti-sigma factor AsiA {Bacteriophage T4 [TaxId: 10665]}
Probab=20.17 E-value=31 Score=25.08 Aligned_cols=28 Identities=21% Similarity=0.323 Sum_probs=21.1
Q ss_pred CCCHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015714 364 SFRVEMILEQILTALTYEEQKALYMKLGE 392 (402)
Q Consensus 364 ~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 392 (402)
.++=...-+.+ +.||.||+.+++++.++
T Consensus 47 eft~~sFrqm~-~~Lt~~er~elie~Fne 74 (89)
T d1tlha_ 47 KLNQNSFRKIV-SELTQEDKKTLIDEFNE 74 (89)
T ss_dssp ECCHHHHHHHH-HSSCHHHHHHHHHHCHH
T ss_pred HHHHhHHHHHH-HHCCHHHHHHHHHHHHh
Confidence 45555555544 56999999999999887
Done!