Query 015716
Match_columns 402
No_of_seqs 287 out of 2630
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 08:54:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015716.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015716hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0144 RNA-binding protein CU 100.0 2.2E-57 4.9E-62 408.4 24.1 395 6-401 26-476 (510)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 2.2E-47 4.8E-52 365.0 30.9 170 13-186 2-173 (352)
3 KOG0145 RNA-binding protein EL 100.0 1.2E-47 2.7E-52 324.2 21.6 171 11-185 38-210 (360)
4 KOG0117 Heterogeneous nuclear 100.0 1E-41 2.3E-46 308.7 19.6 170 10-188 79-252 (506)
5 TIGR01628 PABP-1234 polyadenyl 100.0 1.2E-40 2.5E-45 336.7 27.6 244 9-401 83-336 (562)
6 TIGR01628 PABP-1234 polyadenyl 100.0 6.5E-41 1.4E-45 338.5 24.8 226 15-401 1-229 (562)
7 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.4E-37 3E-42 306.8 27.0 160 13-184 1-174 (481)
8 TIGR01648 hnRNP-R-Q heterogene 100.0 5.4E-38 1.2E-42 307.3 23.4 164 11-184 55-222 (578)
9 KOG0127 Nucleolar protein fibr 100.0 1.3E-37 2.8E-42 288.2 23.9 169 13-187 4-199 (678)
10 KOG0146 RNA-binding protein ET 100.0 1.9E-37 4.1E-42 263.4 11.7 301 87-402 3-338 (371)
11 TIGR01622 SF-CC1 splicing fact 100.0 3E-34 6.5E-39 283.6 29.2 167 11-184 86-266 (457)
12 TIGR01659 sex-lethal sex-letha 100.0 2.2E-34 4.7E-39 269.0 21.5 174 8-185 101-276 (346)
13 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.5E-33 3.3E-38 278.1 24.5 159 14-184 96-351 (481)
14 KOG0148 Apoptosis-promoting RN 100.0 1.5E-34 3.2E-39 246.5 14.7 141 10-185 2-143 (321)
15 TIGR01645 half-pint poly-U bin 100.0 3.6E-32 7.7E-37 266.7 32.3 168 11-184 104-284 (612)
16 KOG0123 Polyadenylate-binding 100.0 5.3E-33 1.2E-37 260.9 20.2 217 15-401 2-218 (369)
17 KOG0123 Polyadenylate-binding 100.0 4E-32 8.7E-37 255.0 21.3 236 14-401 76-321 (369)
18 TIGR01642 U2AF_lg U2 snRNP aux 100.0 2E-31 4.3E-36 267.1 26.9 162 9-183 170-374 (509)
19 KOG0148 Apoptosis-promoting RN 100.0 1.2E-31 2.5E-36 228.9 17.0 164 10-184 58-238 (321)
20 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 8.4E-30 1.8E-34 243.6 19.7 171 11-185 86-350 (352)
21 TIGR01659 sex-lethal sex-letha 100.0 5.7E-29 1.2E-33 232.6 16.7 140 100-401 105-245 (346)
22 KOG0117 Heterogeneous nuclear 100.0 5.5E-27 1.2E-31 213.3 25.9 170 11-191 161-338 (506)
23 KOG0127 Nucleolar protein fibr 100.0 1E-27 2.2E-32 222.8 17.7 172 13-190 116-384 (678)
24 TIGR01648 hnRNP-R-Q heterogene 99.9 2E-27 4.2E-32 233.2 15.9 161 12-184 136-307 (578)
25 KOG0144 RNA-binding protein CU 99.9 5.9E-28 1.3E-32 218.5 10.6 141 102-401 34-175 (510)
26 TIGR01645 half-pint poly-U bin 99.9 2.9E-27 6.4E-32 232.2 14.1 149 102-401 107-256 (612)
27 KOG0131 Splicing factor 3b, su 99.9 2.2E-27 4.8E-32 191.5 10.7 170 11-186 6-179 (203)
28 KOG0110 RNA-binding protein (R 99.9 6.6E-27 1.4E-31 224.2 15.1 230 10-401 381-665 (725)
29 KOG4212 RNA-binding protein hn 99.9 9.2E-25 2E-29 198.0 27.1 150 14-167 44-280 (608)
30 KOG0145 RNA-binding protein EL 99.9 3E-26 6.5E-31 194.6 15.1 174 6-183 119-357 (360)
31 KOG0146 RNA-binding protein ET 99.9 7.9E-26 1.7E-30 192.7 10.9 171 7-181 12-362 (371)
32 KOG0124 Polypyrimidine tract-b 99.9 9.8E-24 2.1E-28 187.3 22.4 166 14-185 113-291 (544)
33 TIGR01622 SF-CC1 splicing fact 99.9 3.9E-24 8.4E-29 211.5 17.9 152 99-401 86-238 (457)
34 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1E-23 2.2E-28 211.5 18.7 167 12-184 293-502 (509)
35 KOG0109 RNA-binding protein LA 99.9 9.1E-25 2E-29 188.6 9.1 147 15-183 3-149 (346)
36 KOG0131 Splicing factor 3b, su 99.9 3E-23 6.5E-28 167.7 7.4 138 102-400 9-148 (203)
37 KOG0124 Polypyrimidine tract-b 99.9 2.8E-22 6.1E-27 178.1 10.9 149 102-401 113-262 (544)
38 KOG4205 RNA-binding protein mu 99.9 8.7E-22 1.9E-26 178.7 11.0 168 13-188 5-180 (311)
39 KOG1190 Polypyrimidine tract-b 99.9 6.8E-21 1.5E-25 171.8 16.2 161 12-183 26-227 (492)
40 KOG0110 RNA-binding protein (R 99.9 2.7E-21 5.9E-26 185.9 13.5 170 13-188 514-697 (725)
41 KOG1456 Heterogeneous nuclear 99.9 2.3E-19 5E-24 160.1 22.5 167 10-187 27-202 (494)
42 KOG4211 Splicing factor hnRNP- 99.8 1.2E-17 2.7E-22 154.8 25.9 161 10-181 6-179 (510)
43 KOG0109 RNA-binding protein LA 99.8 5.9E-20 1.3E-24 159.0 7.8 72 103-184 3-74 (346)
44 KOG4205 RNA-binding protein mu 99.8 1.3E-19 2.8E-24 164.6 8.8 144 101-401 5-149 (311)
45 KOG0147 Transcriptional coacti 99.8 8.1E-20 1.8E-24 171.4 6.4 166 9-181 174-355 (549)
46 KOG0105 Alternative splicing f 99.8 1.3E-17 2.9E-22 135.2 12.5 146 11-168 3-175 (241)
47 PLN03134 glycine-rich RNA-bind 99.7 4.5E-17 9.9E-22 133.7 9.7 84 11-97 31-114 (144)
48 KOG4206 Spliceosomal protein s 99.7 6.5E-16 1.4E-20 130.5 15.9 158 13-182 8-220 (221)
49 KOG4212 RNA-binding protein hn 99.7 2.7E-15 5.7E-20 136.9 18.3 77 102-181 44-121 (608)
50 KOG1457 RNA binding protein (c 99.7 1.9E-15 4E-20 126.4 13.3 86 102-187 34-121 (284)
51 KOG0147 Transcriptional coacti 99.7 3.7E-16 8E-21 147.0 10.3 160 13-182 277-526 (549)
52 KOG0149 Predicted RNA-binding 99.7 2.6E-16 5.5E-21 133.1 7.8 72 11-84 9-80 (247)
53 PLN03134 glycine-rich RNA-bind 99.7 1.2E-15 2.6E-20 125.3 11.4 86 96-184 28-114 (144)
54 KOG0105 Alternative splicing f 99.6 2.4E-15 5.2E-20 122.2 11.9 78 101-183 5-82 (241)
55 KOG4206 Spliceosomal protein s 99.6 5.9E-15 1.3E-19 124.7 14.7 81 102-187 9-93 (221)
56 KOG1457 RNA binding protein (c 99.6 2.8E-15 6.2E-20 125.3 12.2 156 10-168 30-273 (284)
57 KOG1548 Transcription elongati 99.6 2E-14 4.4E-19 127.9 15.1 154 13-174 133-344 (382)
58 KOG1190 Polypyrimidine tract-b 99.6 1.9E-13 4.1E-18 124.1 20.7 157 14-183 150-372 (492)
59 KOG0122 Translation initiation 99.6 3.8E-15 8.3E-20 126.5 8.2 85 10-97 185-269 (270)
60 PF00076 RRM_1: RNA recognitio 99.6 5.6E-15 1.2E-19 106.3 7.2 66 17-84 1-66 (70)
61 KOG0121 Nuclear cap-binding pr 99.5 8.8E-15 1.9E-19 111.8 6.1 85 8-95 30-114 (153)
62 PF00076 RRM_1: RNA recognitio 99.5 2.6E-14 5.6E-19 102.8 7.5 67 105-172 1-67 (70)
63 KOG0106 Alternative splicing f 99.5 1.2E-14 2.7E-19 124.1 6.4 143 15-178 2-165 (216)
64 KOG0125 Ataxin 2-binding prote 99.5 4E-14 8.8E-19 125.1 7.4 86 9-99 91-176 (376)
65 KOG0122 Translation initiation 99.5 1.1E-13 2.3E-18 117.7 9.2 81 101-184 188-269 (270)
66 COG0724 RNA-binding proteins ( 99.5 4.6E-13 9.9E-18 123.4 13.7 144 14-160 115-284 (306)
67 PF14259 RRM_6: RNA recognitio 99.5 9.1E-14 2E-18 100.0 7.0 66 17-84 1-66 (70)
68 KOG0149 Predicted RNA-binding 99.5 8.9E-14 1.9E-18 117.8 7.0 77 102-182 12-89 (247)
69 KOG0125 Ataxin 2-binding prote 99.5 1.2E-13 2.7E-18 122.0 7.7 80 101-184 95-174 (376)
70 PLN03120 nucleic acid binding 99.4 3.3E-13 7.2E-18 118.5 9.2 76 13-95 3-78 (260)
71 KOG0120 Splicing factor U2AF, 99.4 4.9E-13 1.1E-17 127.7 10.5 170 10-185 285-493 (500)
72 PF14259 RRM_6: RNA recognitio 99.4 7.5E-13 1.6E-17 95.2 8.3 67 105-172 1-67 (70)
73 KOG0107 Alternative splicing f 99.4 5E-13 1.1E-17 108.0 6.9 78 12-97 8-85 (195)
74 PLN03120 nucleic acid binding 99.4 1.9E-12 4.1E-17 113.8 10.1 76 102-183 4-79 (260)
75 KOG0120 Splicing factor U2AF, 99.4 7.1E-13 1.5E-17 126.7 8.1 162 10-184 171-369 (500)
76 KOG0113 U1 small nuclear ribon 99.4 9.8E-13 2.1E-17 115.0 7.9 81 11-94 98-178 (335)
77 KOG4207 Predicted splicing fac 99.4 7.5E-13 1.6E-17 109.7 6.3 84 8-94 7-90 (256)
78 COG0724 RNA-binding proteins ( 99.4 3.5E-12 7.6E-17 117.5 11.7 79 102-183 115-194 (306)
79 KOG0126 Predicted RNA-binding 99.4 3.8E-14 8.3E-19 115.0 -1.6 79 12-93 33-111 (219)
80 KOG0114 Predicted RNA-binding 99.4 7.8E-12 1.7E-16 92.1 10.5 83 102-189 18-100 (124)
81 smart00362 RRM_2 RNA recogniti 99.4 3.3E-12 7.2E-17 91.7 8.3 66 16-84 1-66 (72)
82 KOG1365 RNA-binding protein Fu 99.4 2.1E-11 4.6E-16 110.0 15.0 150 11-164 57-227 (508)
83 KOG0121 Nuclear cap-binding pr 99.4 1.4E-12 3.1E-17 99.8 6.4 80 100-182 34-114 (153)
84 PLN03213 repressor of silencin 99.4 2.3E-12 4.9E-17 119.7 8.7 80 9-95 5-86 (759)
85 PLN03121 nucleic acid binding 99.3 3.3E-12 7.2E-17 110.4 8.8 75 12-93 3-77 (243)
86 KOG4211 Splicing factor hnRNP- 99.3 1.2E-10 2.7E-15 108.7 19.6 145 12-162 101-340 (510)
87 KOG0113 U1 small nuclear ribon 99.3 3.6E-12 7.8E-17 111.5 8.4 79 101-180 100-179 (335)
88 KOG1456 Heterogeneous nuclear 99.3 3.6E-10 7.9E-15 101.8 20.7 149 21-182 129-361 (494)
89 smart00360 RRM RNA recognition 99.3 6.8E-12 1.5E-16 89.7 8.0 65 19-84 1-65 (71)
90 KOG0107 Alternative splicing f 99.3 5.7E-12 1.2E-16 102.0 7.4 76 102-184 10-85 (195)
91 KOG0114 Predicted RNA-binding 99.3 8.2E-12 1.8E-16 92.0 7.4 83 7-95 11-93 (124)
92 KOG0108 mRNA cleavage and poly 99.3 7.1E-12 1.5E-16 119.3 7.7 81 15-98 19-99 (435)
93 smart00362 RRM_2 RNA recogniti 99.3 2E-11 4.3E-16 87.6 8.2 67 104-172 1-67 (72)
94 KOG4207 Predicted splicing fac 99.3 4.8E-12 1E-16 105.0 5.4 77 102-181 13-90 (256)
95 KOG4454 RNA binding protein (R 99.3 1.6E-12 3.5E-17 108.7 1.9 141 9-166 4-148 (267)
96 PLN03213 repressor of silencin 99.2 4.4E-11 9.5E-16 111.3 10.8 79 102-186 10-90 (759)
97 KOG0130 RNA-binding protein RB 99.2 1.2E-11 2.7E-16 95.5 5.9 84 8-94 66-149 (170)
98 KOG1365 RNA-binding protein Fu 99.2 9.4E-10 2E-14 99.5 18.7 167 12-182 159-360 (508)
99 cd00590 RRM RRM (RNA recogniti 99.2 5.1E-11 1.1E-15 85.9 8.9 72 16-91 1-72 (74)
100 KOG0126 Predicted RNA-binding 99.2 1.2E-12 2.7E-17 106.3 0.2 77 102-181 35-112 (219)
101 KOG0111 Cyclophilin-type pepti 99.2 5.5E-12 1.2E-16 105.5 3.9 83 101-186 9-92 (298)
102 PLN03121 nucleic acid binding 99.2 3.7E-11 8.1E-16 103.9 9.1 75 102-182 5-79 (243)
103 KOG0130 RNA-binding protein RB 99.2 2.2E-11 4.7E-16 94.1 6.6 81 101-184 71-152 (170)
104 KOG0129 Predicted RNA-binding 99.2 1.7E-10 3.7E-15 108.6 13.8 156 6-162 251-432 (520)
105 KOG0108 mRNA cleavage and poly 99.2 4.5E-11 9.7E-16 113.9 9.6 87 103-192 19-106 (435)
106 KOG0128 RNA-binding protein SA 99.2 1.4E-12 3.1E-17 128.7 -1.1 151 11-165 568-731 (881)
107 KOG0111 Cyclophilin-type pepti 99.2 7E-12 1.5E-16 104.9 2.6 86 12-100 8-93 (298)
108 KOG0106 Alternative splicing f 99.2 3.4E-11 7.4E-16 103.2 6.8 71 103-183 2-72 (216)
109 smart00360 RRM RNA recognition 99.2 1.2E-10 2.6E-15 83.1 8.0 66 107-173 1-67 (71)
110 KOG0226 RNA-binding proteins [ 99.2 3.1E-11 6.7E-16 103.4 5.2 156 13-173 95-261 (290)
111 cd00590 RRM RRM (RNA recogniti 99.2 2.6E-10 5.7E-15 82.1 9.3 73 104-179 1-73 (74)
112 KOG0132 RNA polymerase II C-te 99.2 5.9E-09 1.3E-13 102.4 20.8 74 13-95 420-493 (894)
113 smart00361 RRM_1 RNA recogniti 99.1 1.2E-10 2.7E-15 83.4 6.8 56 28-84 2-64 (70)
114 KOG0112 Large RNA-binding prot 99.1 4.8E-11 1E-15 118.6 5.5 170 7-187 365-534 (975)
115 KOG4454 RNA binding protein (R 99.1 1.8E-11 3.9E-16 102.5 0.8 66 102-168 9-74 (267)
116 KOG4660 Protein Mei2, essentia 99.1 2.4E-09 5.2E-14 101.8 14.9 161 5-183 66-249 (549)
117 PF13893 RRM_5: RNA recognitio 99.1 4.6E-10 1E-14 76.6 7.3 56 119-181 1-56 (56)
118 KOG4208 Nucleolar RNA-binding 99.1 3.2E-10 6.9E-15 94.6 6.9 76 8-84 43-119 (214)
119 KOG0128 RNA-binding protein SA 99.1 7.2E-12 1.6E-16 123.8 -3.7 150 12-183 665-814 (881)
120 KOG4307 RNA binding protein RB 99.1 1E-07 2.2E-12 92.7 24.1 164 11-182 308-512 (944)
121 smart00361 RRM_1 RNA recogniti 99.0 1E-09 2.2E-14 78.6 7.1 57 116-173 2-66 (70)
122 PF13893 RRM_5: RNA recognitio 99.0 6.4E-10 1.4E-14 75.9 5.3 55 31-93 1-55 (56)
123 KOG0415 Predicted peptidyl pro 98.9 1.2E-09 2.6E-14 97.8 5.6 84 9-95 234-317 (479)
124 KOG4210 Nuclear localization s 98.9 1.6E-09 3.5E-14 98.7 5.8 169 12-185 86-265 (285)
125 KOG1548 Transcription elongati 98.9 7E-08 1.5E-12 86.7 14.8 78 102-182 134-219 (382)
126 KOG0129 Predicted RNA-binding 98.9 2.9E-08 6.3E-13 93.8 12.3 54 348-401 369-423 (520)
127 KOG0153 Predicted RNA-binding 98.9 4.5E-09 9.7E-14 94.3 6.3 81 8-96 222-302 (377)
128 KOG0153 Predicted RNA-binding 98.8 1.4E-08 3E-13 91.2 8.1 78 99-183 225-302 (377)
129 KOG0415 Predicted peptidyl pro 98.8 6.7E-09 1.5E-13 93.2 5.9 91 93-186 230-321 (479)
130 KOG4661 Hsp27-ERE-TATA-binding 98.7 2.4E-08 5.3E-13 94.8 7.3 82 10-94 401-482 (940)
131 KOG0132 RNA polymerase II C-te 98.7 2.6E-08 5.6E-13 98.0 7.5 78 102-187 421-498 (894)
132 PF04059 RRM_2: RNA recognitio 98.7 1.1E-07 2.4E-12 71.5 9.0 67 15-81 2-70 (97)
133 KOG4307 RNA binding protein RB 98.7 1.7E-07 3.8E-12 91.1 12.1 54 347-401 432-486 (944)
134 KOG4208 Nucleolar RNA-binding 98.7 5.4E-08 1.2E-12 81.5 7.4 80 102-184 49-130 (214)
135 KOG0226 RNA-binding proteins [ 98.6 5.2E-08 1.1E-12 83.9 5.6 83 10-95 186-268 (290)
136 KOG4210 Nuclear localization s 98.6 1.1E-08 2.4E-13 93.3 1.0 71 101-172 87-158 (285)
137 KOG0533 RRM motif-containing p 98.6 1.6E-07 3.5E-12 82.6 8.0 80 100-182 81-160 (243)
138 KOG0533 RRM motif-containing p 98.6 1.7E-07 3.7E-12 82.4 8.1 81 10-94 79-159 (243)
139 KOG4661 Hsp27-ERE-TATA-binding 98.5 1.8E-07 3.9E-12 89.0 6.9 79 102-183 405-484 (940)
140 KOG2193 IGF-II mRNA-binding pr 98.5 1.3E-08 2.8E-13 93.4 -1.2 154 15-182 2-155 (584)
141 KOG0116 RasGAP SH3 binding pro 98.5 2.4E-07 5.2E-12 88.1 6.3 66 11-76 285-350 (419)
142 KOG4209 Splicing factor RNPS1, 98.4 3.7E-07 8.1E-12 80.6 5.0 82 8-93 95-176 (231)
143 KOG0116 RasGAP SH3 binding pro 98.4 7.6E-07 1.7E-11 84.8 7.3 54 348-401 287-340 (419)
144 KOG4849 mRNA cleavage factor I 98.3 0.00016 3.6E-09 65.3 18.9 71 102-173 80-153 (498)
145 KOG0151 Predicted splicing reg 98.2 2.1E-06 4.5E-11 84.1 6.4 82 11-95 171-255 (877)
146 PF04059 RRM_2: RNA recognitio 98.2 1.5E-05 3.2E-10 60.1 9.0 83 103-185 2-88 (97)
147 KOG4660 Protein Mei2, essentia 98.2 1.5E-06 3.2E-11 83.2 3.9 68 100-172 73-140 (549)
148 PF11608 Limkain-b1: Limkain b 98.1 1.1E-05 2.3E-10 57.9 6.9 70 103-184 3-77 (90)
149 KOG4676 Splicing factor, argin 98.1 1.2E-06 2.7E-11 79.9 1.8 146 15-167 8-212 (479)
150 KOG0151 Predicted splicing reg 98.1 5.5E-06 1.2E-10 81.2 6.2 79 102-183 174-256 (877)
151 KOG4209 Splicing factor RNPS1, 98.1 8.2E-06 1.8E-10 72.1 6.5 81 98-182 97-178 (231)
152 PF08777 RRM_3: RNA binding mo 98.0 1.8E-05 3.9E-10 61.1 5.9 58 15-78 2-59 (105)
153 PF08777 RRM_3: RNA binding mo 98.0 4.2E-05 9.2E-10 59.0 7.9 71 103-178 2-76 (105)
154 KOG0112 Large RNA-binding prot 97.9 6.2E-06 1.4E-10 83.0 3.6 69 102-170 372-440 (975)
155 PF11608 Limkain-b1: Limkain b 97.8 0.00012 2.5E-09 52.6 7.2 67 15-94 3-74 (90)
156 KOG1995 Conserved Zn-finger pr 97.8 3.6E-05 7.7E-10 70.2 5.7 83 10-95 62-152 (351)
157 KOG4676 Splicing factor, argin 97.7 2.7E-05 5.9E-10 71.4 4.1 67 103-170 8-78 (479)
158 KOG2193 IGF-II mRNA-binding pr 97.7 2.6E-05 5.7E-10 72.1 3.4 77 103-186 2-78 (584)
159 PF14605 Nup35_RRM_2: Nup53/35 97.7 0.00014 2.9E-09 48.5 5.4 52 15-73 2-53 (53)
160 KOG2314 Translation initiation 97.5 0.00024 5.1E-09 68.4 6.3 77 102-180 58-140 (698)
161 KOG2314 Translation initiation 97.4 0.00039 8.4E-09 67.0 7.4 79 5-84 49-133 (698)
162 KOG1855 Predicted RNA-binding 97.4 0.00013 2.8E-09 67.9 4.1 67 101-167 230-310 (484)
163 KOG4849 mRNA cleavage factor I 97.4 0.00019 4.1E-09 64.9 4.2 74 10-84 76-151 (498)
164 PF14605 Nup35_RRM_2: Nup53/35 97.3 0.00054 1.2E-08 45.6 4.9 52 103-160 2-53 (53)
165 PF05172 Nup35_RRM: Nup53/35/4 97.3 0.0006 1.3E-08 51.8 5.7 70 12-84 4-80 (100)
166 COG5175 MOT2 Transcriptional r 97.3 0.00028 6.2E-09 63.6 4.5 79 15-96 115-202 (480)
167 KOG0115 RNA-binding protein p5 97.2 0.00067 1.5E-08 59.2 5.5 89 68-165 6-94 (275)
168 KOG3152 TBP-binding protein, a 97.1 0.00044 9.5E-09 60.2 3.5 71 13-84 73-155 (278)
169 KOG1995 Conserved Zn-finger pr 97.1 0.0005 1.1E-08 62.9 3.6 82 100-184 64-154 (351)
170 KOG1855 Predicted RNA-binding 97.0 0.00062 1.3E-08 63.5 4.1 67 12-78 229-308 (484)
171 PF10309 DUF2414: Protein of u 97.0 0.0051 1.1E-07 42.0 7.1 54 14-76 5-62 (62)
172 PF08675 RNA_bind: RNA binding 96.9 0.0035 7.6E-08 45.1 6.1 58 11-77 6-63 (87)
173 COG5175 MOT2 Transcriptional r 96.9 0.0031 6.8E-08 57.0 6.9 80 102-184 114-203 (480)
174 KOG1996 mRNA splicing factor [ 96.8 0.0029 6.2E-08 56.2 6.1 67 116-185 300-368 (378)
175 KOG3152 TBP-binding protein, a 96.8 0.00094 2E-08 58.2 2.9 71 101-172 73-156 (278)
176 KOG2416 Acinus (induces apopto 96.6 0.0074 1.6E-07 58.8 8.0 83 100-187 442-525 (718)
177 KOG0115 RNA-binding protein p5 96.5 0.0089 1.9E-07 52.4 6.9 62 15-77 32-93 (275)
178 PF10309 DUF2414: Protein of u 96.4 0.017 3.6E-07 39.5 6.1 55 102-163 5-62 (62)
179 KOG2202 U2 snRNP splicing fact 96.4 0.0019 4.2E-08 56.5 2.0 62 117-181 83-145 (260)
180 PF08675 RNA_bind: RNA binding 96.2 0.019 4.2E-07 41.4 6.1 55 103-165 10-64 (87)
181 PF05172 Nup35_RRM: Nup53/35/4 96.2 0.021 4.6E-07 43.4 6.7 77 102-182 6-90 (100)
182 KOG2416 Acinus (induces apopto 96.2 0.0039 8.4E-08 60.7 3.1 79 10-94 440-519 (718)
183 KOG2202 U2 snRNP splicing fact 96.0 0.0037 8.1E-08 54.7 2.1 61 29-93 83-144 (260)
184 PF03467 Smg4_UPF3: Smg-4/UPF3 95.5 0.012 2.5E-07 50.1 3.1 74 11-84 4-83 (176)
185 PF07576 BRAP2: BRCA1-associat 95.4 0.18 3.8E-06 39.2 9.0 65 15-81 13-79 (110)
186 KOG2591 c-Mpl binding protein, 95.3 0.055 1.2E-06 52.6 7.0 62 9-77 170-233 (684)
187 PF15023 DUF4523: Protein of u 95.2 0.073 1.6E-06 42.5 6.3 63 9-78 81-147 (166)
188 KOG1996 mRNA splicing factor [ 95.1 0.063 1.4E-06 48.0 6.4 56 28-84 300-356 (378)
189 PF03467 Smg4_UPF3: Smg-4/UPF3 94.1 0.11 2.3E-06 44.2 5.5 83 102-184 7-98 (176)
190 PF15023 DUF4523: Protein of u 94.0 0.17 3.8E-06 40.4 5.9 70 102-181 86-159 (166)
191 KOG4285 Mitotic phosphoprotein 94.0 0.19 4E-06 45.3 6.7 62 14-84 197-258 (350)
192 PF07576 BRAP2: BRCA1-associat 93.7 0.71 1.5E-05 35.8 8.8 64 104-168 15-79 (110)
193 PF08952 DUF1866: Domain of un 93.7 0.17 3.7E-06 41.0 5.5 52 118-178 52-103 (146)
194 KOG2591 c-Mpl binding protein, 93.6 0.38 8.3E-06 47.0 8.6 58 101-164 174-233 (684)
195 PF07292 NID: Nmi/IFP 35 domai 93.0 0.058 1.2E-06 39.8 1.6 66 59-124 1-74 (88)
196 PF08952 DUF1866: Domain of un 92.4 0.33 7.1E-06 39.4 5.4 72 11-94 24-104 (146)
197 PF10567 Nab6_mRNP_bdg: RNA-re 92.1 3.8 8.3E-05 37.1 12.1 150 12-164 13-212 (309)
198 KOG0804 Cytoplasmic Zn-finger 91.7 0.7 1.5E-05 44.1 7.4 68 12-81 72-140 (493)
199 KOG2068 MOT2 transcription fac 91.3 0.098 2.1E-06 48.0 1.4 79 103-184 78-163 (327)
200 KOG2068 MOT2 transcription fac 91.0 0.15 3.4E-06 46.7 2.3 77 14-94 77-160 (327)
201 KOG4574 RNA-binding protein (c 90.2 0.19 4.1E-06 51.4 2.4 74 105-184 301-374 (1007)
202 KOG4574 RNA-binding protein (c 89.7 0.22 4.8E-06 51.0 2.4 74 15-95 299-372 (1007)
203 PF11767 SET_assoc: Histone ly 89.1 1.4 3.1E-05 30.6 5.4 48 25-81 11-58 (66)
204 KOG0804 Cytoplasmic Zn-finger 88.9 1.1 2.4E-05 42.9 6.2 66 102-168 74-140 (493)
205 KOG2253 U1 snRNP complex, subu 88.0 0.054 1.2E-06 53.8 -3.1 60 11-79 37-96 (668)
206 KOG2253 U1 snRNP complex, subu 87.0 0.64 1.4E-05 46.5 3.6 45 347-400 38-82 (668)
207 PF04847 Calcipressin: Calcipr 86.6 1.1 2.3E-05 38.4 4.3 60 115-182 8-69 (184)
208 PF11767 SET_assoc: Histone ly 85.7 2.6 5.6E-05 29.3 5.1 48 113-168 11-58 (66)
209 KOG4285 Mitotic phosphoprotein 84.7 2.4 5.2E-05 38.4 5.7 75 103-186 198-272 (350)
210 KOG2135 Proteins containing th 84.3 0.42 9.2E-06 45.8 0.9 75 13-97 371-446 (526)
211 PF03468 XS: XS domain; Inter 77.0 3.5 7.6E-05 32.4 3.7 48 351-401 10-66 (116)
212 PF07292 NID: Nmi/IFP 35 domai 75.7 1.4 3.1E-05 32.5 1.1 24 347-370 50-73 (88)
213 KOG1924 RhoA GTPase effector D 75.5 28 0.00061 36.2 10.2 17 350-366 642-658 (1102)
214 PF10567 Nab6_mRNP_bdg: RNA-re 75.2 5.1 0.00011 36.3 4.6 62 98-159 11-80 (309)
215 PRK14548 50S ribosomal protein 74.0 14 0.0003 27.1 5.9 58 16-76 22-81 (84)
216 PF14111 DUF4283: Domain of un 73.4 7.6 0.00017 31.8 5.1 114 15-137 16-140 (153)
217 KOG4483 Uncharacterized conser 71.2 11 0.00024 35.7 5.9 56 13-75 390-446 (528)
218 KOG4213 RNA-binding protein La 70.5 3.5 7.6E-05 34.5 2.3 62 11-76 108-170 (205)
219 KOG2318 Uncharacterized conser 69.7 20 0.00043 35.8 7.5 80 101-181 173-305 (650)
220 PRK14548 50S ribosomal protein 69.5 15 0.00033 26.9 5.2 57 104-162 22-80 (84)
221 PF04847 Calcipressin: Calcipr 69.1 7.8 0.00017 33.1 4.2 45 27-77 8-52 (184)
222 TIGR03636 L23_arch archaeal ri 67.2 17 0.00038 26.1 5.1 57 104-162 15-73 (77)
223 KOG4410 5-formyltetrahydrofola 65.8 21 0.00046 32.2 6.3 50 13-67 329-378 (396)
224 KOG2135 Proteins containing th 65.0 3.6 7.8E-05 39.7 1.5 69 106-183 376-445 (526)
225 KOG4410 5-formyltetrahydrofola 64.9 13 0.00028 33.6 4.8 47 102-153 330-377 (396)
226 KOG2891 Surface glycoprotein [ 63.3 7.4 0.00016 34.9 3.0 49 348-396 148-213 (445)
227 PF03468 XS: XS domain; Inter 63.2 9.9 0.00021 29.8 3.5 50 16-68 10-68 (116)
228 TIGR03636 L23_arch archaeal ri 60.0 45 0.00097 24.0 6.1 58 16-76 15-74 (77)
229 PF03880 DbpA: DbpA RNA bindin 57.5 52 0.0011 23.3 6.2 58 112-180 11-73 (74)
230 PF03880 DbpA: DbpA RNA bindin 57.4 43 0.00093 23.7 5.7 57 24-92 11-72 (74)
231 PF15513 DUF4651: Domain of un 57.0 23 0.00051 24.1 3.9 18 117-134 9-26 (62)
232 KOG4008 rRNA processing protei 54.0 7.3 0.00016 34.1 1.4 36 347-382 38-73 (261)
233 KOG2318 Uncharacterized conser 53.3 15 0.00032 36.6 3.5 42 347-389 172-218 (650)
234 KOG2891 Surface glycoprotein [ 51.6 42 0.00091 30.2 5.7 35 102-136 149-195 (445)
235 COG5193 LHP1 La protein, small 49.1 7.4 0.00016 36.9 0.8 63 12-74 172-244 (438)
236 KOG2295 C2H2 Zn-finger protein 43.2 3.9 8.5E-05 40.3 -2.0 66 13-78 230-295 (648)
237 PTZ00191 60S ribosomal protein 43.0 64 0.0014 26.3 5.1 56 104-161 83-140 (145)
238 PTZ00191 60S ribosomal protein 41.9 95 0.0021 25.3 5.9 57 16-75 83-141 (145)
239 PF11411 DNA_ligase_IV: DNA li 40.6 21 0.00046 21.4 1.5 17 359-375 19-35 (36)
240 KOG1295 Nonsense-mediated deca 40.2 36 0.00079 32.3 3.8 74 11-84 4-80 (376)
241 PF02714 DUF221: Domain of unk 39.8 53 0.0011 30.8 5.0 56 59-124 1-56 (325)
242 KOG4483 Uncharacterized conser 38.0 58 0.0013 31.1 4.7 55 102-162 391-446 (528)
243 KOG4019 Calcineurin-mediated s 36.7 38 0.00082 28.7 3.0 74 103-183 11-89 (193)
244 KOG2295 C2H2 Zn-finger protein 36.5 6.2 0.00013 39.0 -1.8 66 102-167 231-297 (648)
245 KOG4213 RNA-binding protein La 32.9 57 0.0012 27.5 3.4 58 102-163 111-170 (205)
246 KOG4008 rRNA processing protei 32.4 45 0.00097 29.4 2.8 36 9-44 35-70 (261)
247 COG0150 PurM Phosphoribosylami 31.9 15 0.00032 34.4 -0.1 49 27-79 274-322 (345)
248 COG5638 Uncharacterized conser 31.1 2.2E+02 0.0047 27.4 7.3 40 11-50 143-187 (622)
249 PF15513 DUF4651: Domain of un 30.3 1.3E+02 0.0029 20.5 4.3 18 364-381 9-26 (62)
250 PRK15464 cold shock-like prote 29.9 26 0.00057 24.7 0.9 10 389-398 14-23 (70)
251 PRK12280 rplW 50S ribosomal pr 29.4 1.9E+02 0.0042 24.0 5.9 35 16-50 23-59 (158)
252 TIGR02381 cspD cold shock doma 29.3 30 0.00066 24.1 1.2 12 388-399 10-21 (68)
253 PRK09507 cspE cold shock prote 28.3 30 0.00065 24.2 1.0 10 389-398 13-22 (69)
254 CHL00030 rpl23 ribosomal prote 28.3 2.2E+02 0.0047 21.3 5.6 35 16-50 20-56 (93)
255 PRK15463 cold shock-like prote 27.4 33 0.00071 24.1 1.1 10 389-398 14-23 (70)
256 COG0445 GidA Flavin-dependent 27.2 2.2E+02 0.0048 29.0 6.9 79 58-136 238-335 (621)
257 PRK10943 cold shock-like prote 26.8 32 0.0007 24.0 0.9 10 389-398 13-22 (69)
258 PF13046 DUF3906: Protein of u 26.5 75 0.0016 21.8 2.5 32 28-61 32-63 (64)
259 COG5353 Uncharacterized protei 26.1 3.4E+02 0.0074 22.2 6.6 57 12-68 85-154 (161)
260 PRK04204 RNA 3'-terminal-phosp 25.4 4.1E+02 0.0088 25.3 8.3 119 15-152 114-244 (343)
261 cd04904 ACT_AAAH ACT domain of 25.3 2.4E+02 0.0053 19.7 5.5 50 116-165 14-65 (74)
262 COG1278 CspC Cold shock protei 25.1 30 0.00065 24.1 0.5 12 388-399 10-21 (67)
263 PF08544 GHMP_kinases_C: GHMP 24.3 2.6E+02 0.0056 19.7 6.3 43 29-76 37-79 (85)
264 PF04026 SpoVG: SpoVG; InterP 24.2 1.3E+02 0.0028 22.1 3.6 26 375-400 2-27 (84)
265 PRK10354 RNA chaperone/anti-te 24.0 39 0.00084 23.7 0.9 10 389-398 14-23 (70)
266 PRK05738 rplW 50S ribosomal pr 23.8 1.6E+02 0.0035 21.9 4.3 35 16-50 21-57 (92)
267 PRK09890 cold shock protein Cs 23.8 39 0.00085 23.7 0.9 10 389-398 14-23 (70)
268 PF02714 DUF221: Domain of unk 23.6 82 0.0018 29.5 3.3 33 146-183 1-33 (325)
269 KOG1295 Nonsense-mediated deca 23.1 1.1E+02 0.0023 29.3 3.8 72 102-173 7-82 (376)
270 PF14026 DUF4242: Protein of u 22.9 2.9E+02 0.0063 19.7 8.0 57 17-75 3-66 (77)
271 PF01071 GARS_A: Phosphoribosy 22.1 1.6E+02 0.0036 25.4 4.5 62 115-179 25-86 (194)
272 PF10281 Ish1: Putative stress 21.8 87 0.0019 18.8 2.1 18 25-42 3-20 (38)
273 COG5193 LHP1 La protein, small 21.3 47 0.001 31.7 1.1 60 102-161 174-244 (438)
274 COG5638 Uncharacterized conser 21.3 92 0.002 29.8 3.0 45 346-391 143-192 (622)
275 PRK11901 hypothetical protein; 21.2 1.8E+02 0.0039 27.2 4.8 53 112-166 252-307 (327)
276 cd04880 ACT_AAAH-PDT-like ACT 20.6 3E+02 0.0065 19.0 5.6 50 116-165 13-66 (75)
277 PRK11230 glycolate oxidase sub 20.3 2.8E+02 0.0061 27.9 6.5 50 27-77 202-255 (499)
278 PF07530 PRE_C2HC: Associated 20.0 1.1E+02 0.0024 21.3 2.6 44 29-72 2-46 (68)
No 1
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.2e-57 Score=408.41 Aligned_cols=395 Identities=42% Similarity=0.659 Sum_probs=277.0
Q ss_pred ccccCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCC
Q 015716 6 KEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGA 85 (402)
Q Consensus 6 ~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~ 85 (402)
+.+..+.+..++||+.||+.|+|+||+++|++||.|.+|.|++||.|+.++|||||.|.+.++|.+|+.+||+.+.++|.
T Consensus 26 ~~d~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~ 105 (510)
T KOG0144|consen 26 HTDNPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGM 105 (510)
T ss_pred CCCCCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCC
Confidence 34445678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccCcccccc--cceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHH
Q 015716 86 SSPLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAI 163 (402)
Q Consensus 86 ~~~~~~~~~~~~~~~~--~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l 163 (402)
..++.|++++.+.++. +++|||+.|+..++|.+++++|++||.|++|.|++|.++.+||||||+|.+.|.|..|++.|
T Consensus 106 ~~pvqvk~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ 185 (510)
T KOG0144|consen 106 HHPVQVKYADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKAL 185 (510)
T ss_pred CcceeecccchhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhh
Confidence 9999999999999886 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccCCCceeEEEEEcCCHHHHHHHHH-HHHHhhcCCCCCC-CCCCCCccCCCCCCCCCCCCCCCcCC-CCCCCcCCC
Q 015716 164 NGKHKMEGSSVPLVVKWADTEKERQARRA-QKAQSQANNLPNA-DSQHPSLFGALPMGYAPPYNGYGYQA-SGSYGLMQY 240 (402)
Q Consensus 164 ~g~~~~~g~~~~l~v~~a~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~ 240 (402)
||...+.|+..+|.|+||++++++..++. +........+.+. .+.....++.+.+++.+++....++. .+.++ .-+
T Consensus 186 ng~~tmeGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~-g~~ 264 (510)
T KOG0144|consen 186 NGTQTMEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLG-GLP 264 (510)
T ss_pred ccceeeccCCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccc-ccc
Confidence 99999999999999999999998887765 3333343344433 33345677888888888877765543 34444 122
Q ss_pred CCCCCC----CCCCCCCCC--C-----CCCCCCCCC-------CCCC---CCCCCCCCCCC-------------CCCCCC
Q 015716 241 RLPPMQ----NQPGFHGII--P-----PVNQGNAMR-------GASP---DLSSNMGPRNY-------------AMPPSG 286 (402)
Q Consensus 241 ~~~p~~----~~~~~~~~~--~-----~~~~~~~~~-------~~~~---~~~~~~~~~~~-------------~~~~~~ 286 (402)
+++|+. +++...++. + +..++..+. ...+ ...++...... ++++..
T Consensus 265 ~L~~l~a~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~ 344 (510)
T KOG0144|consen 265 PLGPLNATQLQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPAN 344 (510)
T ss_pred CCCCcchhHHHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchh
Confidence 333332 222211111 1 111111111 0000 00000000000 000011
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCC--------CCCCC---------CCCCCCCCCCcccCCCC
Q 015716 287 FVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVAN--------SNPST---------SSSGGTGSGGQIEGPPG 349 (402)
Q Consensus 287 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~---------~~~~~~~~~~~~~~~~~ 349 (402)
++.....+..++..|+.-..+-+..+.+....+.......+ ++... .++.......+.++|+|
T Consensus 345 ~n~~~~~a~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeG 424 (510)
T KOG0144|consen 345 YNLAGGMAGAGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEG 424 (510)
T ss_pred cccccccccccccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCc
Confidence 11000000011111111000000000000000000000000 00011 12223344567789999
Q ss_pred ccEEEecCCCCCCHHHHHHHhhccCcEEEEEEEEeCCCCCcceEEEEEeecC
Q 015716 350 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGKYTVDLD 401 (402)
Q Consensus 350 ~~lfV~nLp~~~t~~~L~~~F~~fG~v~~~~i~~d~~tg~skG~gFV~f~~~ 401 (402)
.+|||+|||.++-+++|...|.+||.|++++|..|+.||.||+||||+|+|+
T Consensus 425 anlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~ 476 (510)
T KOG0144|consen 425 ANLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENA 476 (510)
T ss_pred cceeeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccch
Confidence 9999999999999999999999999999999999999999999999999986
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=2.2e-47 Score=364.98 Aligned_cols=170 Identities=27% Similarity=0.528 Sum_probs=153.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCcccc
Q 015716 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVK 92 (402)
Q Consensus 13 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~~~ 92 (402)
+.++|||+|||.+++|++|+++|++||+|.+|+|++|+.+++++|||||+|.+.++|++||+.|++.. +.| +.+.+.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~-l~g--~~i~v~ 78 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLR-LQN--KTIKVS 78 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEE-ECC--eeEEEE
Confidence 57899999999999999999999999999999999999999999999999999999999999997765 666 778888
Q ss_pred ccCccccc-ccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccC
Q 015716 93 YADGELER-LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKME 170 (402)
Q Consensus 93 ~~~~~~~~-~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~ 170 (402)
++.+.... ..++|||+|||..+++++|+++|++||.|..++++.+. ++.++|||||+|.+.++|++|++.|||.. +.
T Consensus 79 ~a~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~-~~ 157 (352)
T TIGR01661 79 YARPSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTT-PS 157 (352)
T ss_pred eecccccccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCc-cC
Confidence 77655432 46789999999999999999999999999999999876 67899999999999999999999999986 77
Q ss_pred CCceeEEEEEcCCHHH
Q 015716 171 GSSVPLVVKWADTEKE 186 (402)
Q Consensus 171 g~~~~l~v~~a~~~~~ 186 (402)
|+..+|.|.|+.....
T Consensus 158 g~~~~i~v~~a~~~~~ 173 (352)
T TIGR01661 158 GCTEPITVKFANNPSS 173 (352)
T ss_pred CCceeEEEEECCCCCc
Confidence 7778899999976643
No 3
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.2e-47 Score=324.18 Aligned_cols=171 Identities=27% Similarity=0.528 Sum_probs=158.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCcc
Q 015716 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (402)
Q Consensus 11 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~ 90 (402)
++..+.|.|.-||.++|+|||+.+|...|+|++|++++||.+|.+.|||||.|.++++|++||..||+.+ +. .+.|+
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLr-LQ--~KTIK 114 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLR-LQ--NKTIK 114 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhccee-ec--cceEE
Confidence 5567889999999999999999999999999999999999999999999999999999999999998877 43 48999
Q ss_pred ccccCccccc-ccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcc
Q 015716 91 VKYADGELER-LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHK 168 (402)
Q Consensus 91 ~~~~~~~~~~-~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 168 (402)
|+++++..+. ...+|||.+||..+|..+|+++|++||.|..-+|..|. +|.+||.+||+|+..++|++|++.|||..
T Consensus 115 VSyARPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~- 193 (360)
T KOG0145|consen 115 VSYARPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQK- 193 (360)
T ss_pred EEeccCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCC-
Confidence 9999877654 36799999999999999999999999999999998887 89999999999999999999999999987
Q ss_pred cCCCceeEEEEEcCCHH
Q 015716 169 MEGSSVPLVVKWADTEK 185 (402)
Q Consensus 169 ~~g~~~~l~v~~a~~~~ 185 (402)
-.|+.-+|.|+|+....
T Consensus 194 P~g~tepItVKFannPs 210 (360)
T KOG0145|consen 194 PSGCTEPITVKFANNPS 210 (360)
T ss_pred CCCCCCCeEEEecCCcc
Confidence 88898999999998773
No 4
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1e-41 Score=308.74 Aligned_cols=170 Identities=26% Similarity=0.499 Sum_probs=149.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCc
Q 015716 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (402)
Q Consensus 10 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~ 89 (402)
..+..|.|||+.||.++.|+||..+|++.|+|.+++|++|+.+|.+||||||+|.+.++|++||+.||+..+-.|+...+
T Consensus 79 ~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igv 158 (506)
T KOG0117|consen 79 PPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGV 158 (506)
T ss_pred CCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEE
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999888844444
Q ss_pred cccccCcccccccceEEEcCCCCCCcHHHHHHhhccCCC-eeEEEEeeCC--CCCcceEEEEEeCCHHHHHHHHHHH-cC
Q 015716 90 QVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGT-IKDLQILRGS--QQTSKGCAFLKYETKEQALAALEAI-NG 165 (402)
Q Consensus 90 ~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~-v~~~~i~~~~--~~~~~g~afV~f~~~~~A~~A~~~l-~g 165 (402)
+++.+ +++|||+|||..+++++|++.+++.++ |.+|.+...+ ..++||||||+|.++..|..|.++| +|
T Consensus 159 c~Sva-------n~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g 231 (506)
T KOG0117|consen 159 CVSVA-------NCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPG 231 (506)
T ss_pred EEeee-------cceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCC
Confidence 44433 589999999999999999999999985 8888887765 5788999999999999999997655 67
Q ss_pred CcccCCCceeEEEEEcCCHHHHH
Q 015716 166 KHKMEGSSVPLVVKWADTEKERQ 188 (402)
Q Consensus 166 ~~~~~g~~~~l~v~~a~~~~~~~ 188 (402)
+..+.|. .+.|+||+++.+..
T Consensus 232 ~~klwgn--~~tVdWAep~~e~d 252 (506)
T KOG0117|consen 232 KIKLWGN--AITVDWAEPEEEPD 252 (506)
T ss_pred ceeecCC--cceeeccCcccCCC
Confidence 7767776 48999999876543
No 5
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=1.2e-40 Score=336.72 Aligned_cols=244 Identities=25% Similarity=0.390 Sum_probs=201.5
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCC
Q 015716 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (402)
Q Consensus 9 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~ 88 (402)
.+.....+|||+|||.++++++|+++|++||.|.+|+++.+. +++++|||||+|.+.++|++|++.|++.. +.+ +.
T Consensus 83 ~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~-~~~--~~ 158 (562)
T TIGR01628 83 LRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAIQKVNGML-LND--KE 158 (562)
T ss_pred ccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHHHHhcccE-ecC--ce
Confidence 334456789999999999999999999999999999999987 58899999999999999999999997665 555 55
Q ss_pred ccccccCccc------ccccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHH
Q 015716 89 LQVKYADGEL------ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEA 162 (402)
Q Consensus 89 ~~~~~~~~~~------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~ 162 (402)
+.+....... ....++|||+||+.++++++|+++|+.||.|.++.++++.++.++|||||+|.+.++|.+|++.
T Consensus 159 i~v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~ 238 (562)
T TIGR01628 159 VYVGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEE 238 (562)
T ss_pred EEEeccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHH
Confidence 5554332222 2235689999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCcccC----CCceeEEEEEcCCHHHHHHHHHHHHHhhcCCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCCCCCCcC
Q 015716 163 INGKHKME----GSSVPLVVKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLM 238 (402)
Q Consensus 163 l~g~~~~~----g~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 238 (402)
|||.. +. |+ .|.|.++..+.++..............
T Consensus 239 l~g~~-i~~~~~g~--~l~v~~a~~k~er~~~~~~~~~~~~~~------------------------------------- 278 (562)
T TIGR01628 239 MNGKK-IGLAKEGK--KLYVGRAQKRAEREAELRRKFEELQQE------------------------------------- 278 (562)
T ss_pred hCCcE-ecccccce--eeEeecccChhhhHHHHHhhHHhhhhh-------------------------------------
Confidence 99988 55 44 588999888776644332222111000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 015716 239 QYRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSP 318 (402)
Q Consensus 239 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 318 (402)
T Consensus 279 -------------------------------------------------------------------------------- 278 (562)
T TIGR01628 279 -------------------------------------------------------------------------------- 278 (562)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCcCCCCCCCCCCCCCCCCCcccCCCCccEEEecCCCCCCHHHHHHHhhccCcEEEEEEEEeCCCCCcceEEEEEe
Q 015716 319 GSVSPAVANSNPSTSSSGGTGSGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGKYTV 398 (402)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~fG~v~~~~i~~d~~tg~skG~gFV~f 398 (402)
......+++|||+||+.++++++|+++|++||.|++|+|+.|. +|++||||||+|
T Consensus 279 ------------------------~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~-~g~~~g~gfV~f 333 (562)
T TIGR01628 279 ------------------------RKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDE-KGVSRGFGFVCF 333 (562)
T ss_pred ------------------------hhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECC-CCCcCCeEEEEe
Confidence 0001246689999999999999999999999999999999994 999999999999
Q ss_pred ecC
Q 015716 399 DLD 401 (402)
Q Consensus 399 ~~~ 401 (402)
+++
T Consensus 334 ~~~ 336 (562)
T TIGR01628 334 SNP 336 (562)
T ss_pred CCH
Confidence 874
No 6
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=6.5e-41 Score=338.54 Aligned_cols=226 Identities=26% Similarity=0.433 Sum_probs=194.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCcccccc
Q 015716 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYA 94 (402)
Q Consensus 15 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~~~~~ 94 (402)
.+|||+|||.++||++|+++|++||+|.+|+|++|+.|++++|||||+|.+.++|++|++.|++.. +.| +.|++.|.
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~-i~g--k~i~i~~s 77 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKR-LGG--KPIRIMWS 77 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCE-ECC--eeEEeecc
Confidence 379999999999999999999999999999999999999999999999999999999999997655 566 77777776
Q ss_pred Ccccc---cccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCC
Q 015716 95 DGELE---RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEG 171 (402)
Q Consensus 95 ~~~~~---~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g 171 (402)
..+.. ....+|||+|||.++++++|+++|++||.|.+|++.++.+|+++|||||+|.+.++|++|++.+||.. +++
T Consensus 78 ~~~~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~-~~~ 156 (562)
T TIGR01628 78 QRDPSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGML-LND 156 (562)
T ss_pred cccccccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccE-ecC
Confidence 43322 22568999999999999999999999999999999999999999999999999999999999999986 666
Q ss_pred CceeEEEEEcCCHHHHHHHHHHHHHhhcCCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCCCCCCcCCCCCCCCCCCCCC
Q 015716 172 SSVPLVVKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGF 251 (402)
Q Consensus 172 ~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 251 (402)
+ .|.|.....+.++...
T Consensus 157 ~--~i~v~~~~~~~~~~~~------------------------------------------------------------- 173 (562)
T TIGR01628 157 K--EVYVGRFIKKHEREAA------------------------------------------------------------- 173 (562)
T ss_pred c--eEEEeccccccccccc-------------------------------------------------------------
Confidence 5 4666554433221100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCC
Q 015716 252 HGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPS 331 (402)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (402)
T Consensus 174 -------------------------------------------------------------------------------- 173 (562)
T TIGR01628 174 -------------------------------------------------------------------------------- 173 (562)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCcccCCCCccEEEecCCCCCCHHHHHHHhhccCcEEEEEEEEeCCCCCcceEEEEEeecC
Q 015716 332 TSSSGGTGSGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGKYTVDLD 401 (402)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~fG~v~~~~i~~d~~tg~skG~gFV~f~~~ 401 (402)
.....++|||+|||.++|+++|+++|++||.|++++|+.|. +|++||||||+|.+.
T Consensus 174 -------------~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~ 229 (562)
T TIGR01628 174 -------------PLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG-SGRSRGFAFVNFEKH 229 (562)
T ss_pred -------------cccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCH
Confidence 00134579999999999999999999999999999999996 899999999999874
No 7
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=1.4e-37 Score=306.84 Aligned_cols=160 Identities=18% Similarity=0.273 Sum_probs=134.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhc-CCCCCCCCCCCccc
Q 015716 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACH-NKKTLPGASSPLQV 91 (402)
Q Consensus 13 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~-~~~~~~g~~~~~~~ 91 (402)
++++|||+|||+++++++|+++|++||.|.+|+++++ +|||||+|.+.++|++||+.++ +...+.| +++.+
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g--~~l~v 72 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRG--QPAFF 72 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcC--eEEEE
Confidence 4689999999999999999999999999999999864 4699999999999999999763 3344666 78888
Q ss_pred cccCccc-cc------------ccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHH
Q 015716 92 KYADGEL-ER------------LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALA 158 (402)
Q Consensus 92 ~~~~~~~-~~------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~ 158 (402)
.++..+. .+ ...+|||.||++.+++++|+++|+.||.|++|.|+++.. +++|||+|.+.++|.+
T Consensus 73 ~~s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~---~~~afVef~~~~~A~~ 149 (481)
T TIGR01649 73 NYSTSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN---VFQALVEFESVNSAQH 149 (481)
T ss_pred EecCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC---ceEEEEEECCHHHHHH
Confidence 7764321 10 123799999999999999999999999999999987642 4789999999999999
Q ss_pred HHHHHcCCcccCCCceeEEEEEcCCH
Q 015716 159 ALEAINGKHKMEGSSVPLVVKWADTE 184 (402)
Q Consensus 159 A~~~l~g~~~~~g~~~~l~v~~a~~~ 184 (402)
|++.|||..+.+++ +.|+|.|++..
T Consensus 150 A~~~Lng~~i~~~~-~~l~v~~sk~~ 174 (481)
T TIGR01649 150 AKAALNGADIYNGC-CTLKIEYAKPT 174 (481)
T ss_pred HHHHhcCCcccCCc-eEEEEEEecCC
Confidence 99999999965554 57999998754
No 8
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=5.4e-38 Score=307.29 Aligned_cols=164 Identities=27% Similarity=0.484 Sum_probs=136.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCcc
Q 015716 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (402)
Q Consensus 11 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~ 90 (402)
+...++|||+|||++++|++|+++|++||+|.+|+|++| .+++++|||||+|.+.|+|++||+.||+..+..+ +.+.
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~G--r~l~ 131 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPG--RLLG 131 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCC--cccc
Confidence 445799999999999999999999999999999999999 6799999999999999999999999988876555 4555
Q ss_pred ccccCcccccccceEEEcCCCCCCcHHHHHHhhccCCC-eeEEEEeeC--CCCCcceEEEEEeCCHHHHHHHHHHHcC-C
Q 015716 91 VKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGT-IKDLQILRG--SQQTSKGCAFLKYETKEQALAALEAING-K 166 (402)
Q Consensus 91 ~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~-v~~~~i~~~--~~~~~~g~afV~f~~~~~A~~A~~~l~g-~ 166 (402)
+..+. ..++|||+|||.++++++|+++|++++. ++++.+... ..++++|||||+|.++++|.+|++.|+. .
T Consensus 132 V~~S~-----~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gk 206 (578)
T TIGR01648 132 VCISV-----DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGR 206 (578)
T ss_pred ccccc-----cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccc
Confidence 54432 2578999999999999999999999974 555544432 2467899999999999999999988864 3
Q ss_pred cccCCCceeEEEEEcCCH
Q 015716 167 HKMEGSSVPLVVKWADTE 184 (402)
Q Consensus 167 ~~~~g~~~~l~v~~a~~~ 184 (402)
..+.|+ .|.|+|+.++
T Consensus 207 i~l~Gr--~I~VdwA~p~ 222 (578)
T TIGR01648 207 IQLWGH--VIAVDWAEPE 222 (578)
T ss_pred eEecCc--eEEEEeeccc
Confidence 335555 5889998754
No 9
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.3e-37 Score=288.21 Aligned_cols=169 Identities=25% Similarity=0.444 Sum_probs=147.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCcccc
Q 015716 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVK 92 (402)
Q Consensus 13 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~~~ 92 (402)
...||||++||++++.++|.++|+.+|+|..|.++.++.++.+||||||.|.-.|++++|++...+.+ +.| +.|.+.
T Consensus 4 ~g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~k-f~G--r~l~v~ 80 (678)
T KOG0127|consen 4 SGATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSK-FEG--RILNVD 80 (678)
T ss_pred CCceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCc-ccc--eecccc
Confidence 34899999999999999999999999999999999999889999999999999999999999986665 666 556555
Q ss_pred ccCccccc---------------------------ccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceE
Q 015716 93 YADGELER---------------------------LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGC 145 (402)
Q Consensus 93 ~~~~~~~~---------------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~ 145 (402)
.+...... ..-+|.|+|||+.+.+++|+.+|+.||.|.+|.|++..+|+-.||
T Consensus 81 ~A~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGF 160 (678)
T KOG0127|consen 81 PAKKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGF 160 (678)
T ss_pred cccccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccce
Confidence 54321110 145799999999999999999999999999999999888877899
Q ss_pred EEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEEcCCHHHH
Q 015716 146 AFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKER 187 (402)
Q Consensus 146 afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~a~~~~~~ 187 (402)
|||+|....+|.+|++.+|+.. ++|+ +|-|+||..+..-
T Consensus 161 aFV~fk~~~dA~~Al~~~N~~~-i~gR--~VAVDWAV~Kd~y 199 (678)
T KOG0127|consen 161 AFVQFKEKKDAEKALEFFNGNK-IDGR--PVAVDWAVDKDTY 199 (678)
T ss_pred EEEEEeeHHHHHHHHHhccCce-ecCc--eeEEeeecccccc
Confidence 9999999999999999999988 7776 6999999877543
No 10
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.9e-37 Score=263.43 Aligned_cols=301 Identities=38% Similarity=0.583 Sum_probs=182.2
Q ss_pred CCccccccCccccc-ccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcC
Q 015716 87 SPLQVKYADGELER-LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 165 (402)
Q Consensus 87 ~~~~~~~~~~~~~~-~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 165 (402)
++|.|+.++.+... .+++|||+.|...-.|||++.+|..||.|++|.+.+.++|.+|||+||.|.+..+|+.||+.|||
T Consensus 3 rpiqvkpadsesrg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHg 82 (371)
T KOG0146|consen 3 RPIQVKPADSESRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHG 82 (371)
T ss_pred CCccccccccccCCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcc
Confidence 67888888776554 58899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCceeEEEEEcCCHHHHHHHHHHHHHhhcCCCCCCCCCCCCccCCCCCCCCCCCCCCCc----CCCCCC-CcCCC
Q 015716 166 KHKMEGSSVPLVVKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGY----QASGSY-GLMQY 240 (402)
Q Consensus 166 ~~~~~g~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~----~~~~~~-~~~~~ 240 (402)
...+.|-.-.|.|++++.+++|.-++++++..+..-+.. +...+. .|..|.. ++.... .....
T Consensus 83 SqTmpGASSSLVVK~ADTdkER~lRRMQQma~qlGm~~P-----------l~l~~g-~~~ay~qalmQqQa~~~at~~~~ 150 (371)
T KOG0146|consen 83 SQTMPGASSSLVVKFADTDKERTLRRMQQMAGQLGMFNP-----------LALPFG-AYGAYAQALMQQQAALLATVAGP 150 (371)
T ss_pred cccCCCCccceEEEeccchHHHHHHHHHHHHHHhcccCc-----------cccccc-hhHHHHHHHHHHHHHHHHhhccc
Confidence 999999888999999999999999999988766432211 111000 1111100 000000 00000
Q ss_pred CCCC--------CCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCC-CCCCCC-CCCC-CCCCCCCCCCC--CCCCCC
Q 015716 241 RLPP--------MQNQPGFHGIIPPVNQGNAMRGAS-PDLSSNMGPRN-YAMPPS-GFVG-SGYPAVPGLQY--PMPYPG 306 (402)
Q Consensus 241 ~~~p--------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~-~~~~-~~~~~~~g~~~--~~~~~~ 306 (402)
++.| ++++++.+..- -.++.+.... ...+|...... ...|.+ +.+| .+.++.++.+. ...|++
T Consensus 151 ~L~p~~~~~~~~mQ~~aA~~ang---l~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~n 227 (371)
T KOG0146|consen 151 YLSPMAAFAAAQMQQMAALNANG---LAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYAN 227 (371)
T ss_pred ccChhhhhHHHHHHHHHHHhhcc---cccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhc
Confidence 0111 11111111000 0000000000 00000000000 000000 0000 01111111110 000111
Q ss_pred CCCCCC--------CCCC------CCC-CCCCCcCCCCCCCCCCCCCCCCCcccCCCCccEEEecCCCCCCHHHHHHHhh
Q 015716 307 GMLGHR--------PLNN------SPG-SVSPAVANSNPSTSSSGGTGSGGQIEGPPGANLFIYHIPQEFGDQELGNAFQ 371 (402)
Q Consensus 307 ~~~~~~--------~~~~------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~ 371 (402)
|+.... ++.. .++ .....+.......++++..-...++++|+||||||++||.++.+.||.+.|-
T Consensus 228 g~~pypaQsp~va~~lq~a~~g~~~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~ 307 (371)
T KOG0146|consen 228 GLHPYPAQSPTVADPLQQAYAGVQQYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFL 307 (371)
T ss_pred CCccCCCCCccccchhhhhhhhHHHHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhc
Confidence 111000 0000 000 0111122222233445555566789999999999999999999999999999
Q ss_pred ccCcEEEEEEEEeCCCCCcceEEEEEeecCC
Q 015716 372 AFGRVLSAKVFVDKATGVSKCFGKYTVDLDL 402 (402)
Q Consensus 372 ~fG~v~~~~i~~d~~tg~skG~gFV~f~~~~ 402 (402)
+||.|+|+||.+|+.|+.||+||||+||||+
T Consensus 308 PFGhivSaKVFvDRATNQSKCFGFVSfDNp~ 338 (371)
T KOG0146|consen 308 PFGHIVSAKVFVDRATNQSKCFGFVSFDNPA 338 (371)
T ss_pred cccceeeeeeeehhccccccceeeEecCCch
Confidence 9999999999999999999999999999984
No 11
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=3e-34 Score=283.59 Aligned_cols=167 Identities=30% Similarity=0.489 Sum_probs=144.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCcc
Q 015716 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (402)
Q Consensus 11 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~ 90 (402)
..+.++|||+|||.++++++|+++|++||+|.+|+++.|+.+++++|||||+|.+.++|++||. |++.. +.| ++|.
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~-~~g--~~i~ 161 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQM-LLG--RPII 161 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCE-ECC--eeeE
Confidence 3457899999999999999999999999999999999999999999999999999999999997 65655 556 5665
Q ss_pred ccccCcccc-------------cccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHH
Q 015716 91 VKYADGELE-------------RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQA 156 (402)
Q Consensus 91 ~~~~~~~~~-------------~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A 156 (402)
+.....+.. ...++|||+|||..+++++|+++|++||.|..|.++++. +|.++|||||+|.+.++|
T Consensus 162 v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A 241 (457)
T TIGR01622 162 VQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEA 241 (457)
T ss_pred EeecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHH
Confidence 554332111 114789999999999999999999999999999999987 568999999999999999
Q ss_pred HHHHHHHcCCcccCCCceeEEEEEcCCH
Q 015716 157 LAALEAINGKHKMEGSSVPLVVKWADTE 184 (402)
Q Consensus 157 ~~A~~~l~g~~~~~g~~~~l~v~~a~~~ 184 (402)
.+|++.|||.. +.|+ .|.|.|+...
T Consensus 242 ~~A~~~l~g~~-i~g~--~i~v~~a~~~ 266 (457)
T TIGR01622 242 KEALEVMNGFE-LAGR--PIKVGYAQDS 266 (457)
T ss_pred HHHHHhcCCcE-ECCE--EEEEEEccCC
Confidence 99999999976 6664 6899998743
No 12
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=2.2e-34 Score=269.04 Aligned_cols=174 Identities=28% Similarity=0.500 Sum_probs=156.2
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 015716 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (402)
Q Consensus 8 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~ 87 (402)
.......++|||+|||+++||++|+++|++||+|++|+|++|+.|++++|||||+|.++++|++||+.|++.. +.+ +
T Consensus 101 ~~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~-l~g--r 177 (346)
T TIGR01659 101 NDTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGIT-VRN--K 177 (346)
T ss_pred cCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCc-cCC--c
Confidence 3566688999999999999999999999999999999999999999999999999999999999999997766 555 7
Q ss_pred CccccccCcccc-cccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcC
Q 015716 88 PLQVKYADGELE-RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAING 165 (402)
Q Consensus 88 ~~~~~~~~~~~~-~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g 165 (402)
+|++.++++... ....+|||+|||.++++++|+++|++||+|+.++|+++. +++++|||||+|.+.++|++|++.||+
T Consensus 178 ~i~V~~a~p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng 257 (346)
T TIGR01659 178 RLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNN 257 (346)
T ss_pred eeeeecccccccccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 888887765432 236789999999999999999999999999999999987 899999999999999999999999999
Q ss_pred CcccCCCceeEEEEEcCCHH
Q 015716 166 KHKMEGSSVPLVVKWADTEK 185 (402)
Q Consensus 166 ~~~~~g~~~~l~v~~a~~~~ 185 (402)
.. +.+..++|.|.+++...
T Consensus 258 ~~-~~g~~~~l~V~~a~~~~ 276 (346)
T TIGR01659 258 VI-PEGGSQPLTVRLAEEHG 276 (346)
T ss_pred Cc-cCCCceeEEEEECCccc
Confidence 86 66666789999998653
No 13
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=1.5e-33 Score=278.11 Aligned_cols=159 Identities=21% Similarity=0.285 Sum_probs=129.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCccccc
Q 015716 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKY 93 (402)
Q Consensus 14 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~~~~ 93 (402)
..+|||+||++.+|+++|+++|++||.|++|.++++.. +|+|||+|.+.++|.+|++.||+..+..+ .+.+++.+
T Consensus 96 ~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~----~~~afVef~~~~~A~~A~~~Lng~~i~~~-~~~l~v~~ 170 (481)
T TIGR01649 96 VLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN----VFQALVEFESVNSAQHAKAALNGADIYNG-CCTLKIEY 170 (481)
T ss_pred eEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC----ceEEEEEECCHHHHHHHHHHhcCCcccCC-ceEEEEEE
Confidence 34799999999999999999999999999999987653 46999999999999999999988875433 12222222
Q ss_pred cCc----------cc-----------------------------------------------------------------
Q 015716 94 ADG----------EL----------------------------------------------------------------- 98 (402)
Q Consensus 94 ~~~----------~~----------------------------------------------------------------- 98 (402)
++. +.
T Consensus 171 sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (481)
T TIGR01649 171 AKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSR 250 (481)
T ss_pred ecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCC
Confidence 110 00
Q ss_pred ---------------------ccccceEEEcCCCC-CCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHH
Q 015716 99 ---------------------ERLEHKLFIGMLPK-NVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQA 156 (402)
Q Consensus 99 ---------------------~~~~~~l~v~nlp~-~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A 156 (402)
....++|||+||++ .+++++|+++|+.||.|.+|+++++ .+|||||+|.+.++|
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~----~~g~afV~f~~~~~A 326 (481)
T TIGR01649 251 YRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN----KKETALIEMADPYQA 326 (481)
T ss_pred CcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC----CCCEEEEEECCHHHH
Confidence 01246899999997 6999999999999999999999986 368999999999999
Q ss_pred HHHHHHHcCCcccCCCceeEEEEEcCCH
Q 015716 157 LAALEAINGKHKMEGSSVPLVVKWADTE 184 (402)
Q Consensus 157 ~~A~~~l~g~~~~~g~~~~l~v~~a~~~ 184 (402)
.+|++.|||.. +.|+ .|.|.++..+
T Consensus 327 ~~Ai~~lng~~-l~g~--~l~v~~s~~~ 351 (481)
T TIGR01649 327 QLALTHLNGVK-LFGK--PLRVCPSKQQ 351 (481)
T ss_pred HHHHHHhCCCE-ECCc--eEEEEEcccc
Confidence 99999999987 6665 5888876543
No 14
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-34 Score=246.54 Aligned_cols=141 Identities=25% Similarity=0.495 Sum_probs=114.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCc
Q 015716 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (402)
Q Consensus 10 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~ 89 (402)
.+.+.++|||+||+.++||+-|..||++.|.|.+|+|+.|.. +. +...-++...
T Consensus 2 ~~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e~----------------------~v--~wa~~p~nQs-- 55 (321)
T KOG0148|consen 2 GSDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDEL----------------------KV--NWATAPGNQS-- 55 (321)
T ss_pred CCCCCceEEeeccChhhHHHHHHHHHHhccccccceeehhhh----------------------cc--ccccCcccCC--
Confidence 356789999999999999999999999999999999998721 10 0010111000
Q ss_pred cccccCcccccccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcc
Q 015716 90 QVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHK 168 (402)
Q Consensus 90 ~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 168 (402)
++. .+.-.-+||+.|..+++.|+||+.|.+||+|.+++|++|. +++||||+||.|-+.++|+.||..|||.-
T Consensus 56 -----k~t-~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqW- 128 (321)
T KOG0148|consen 56 -----KPT-SNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQW- 128 (321)
T ss_pred -----CCc-cccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCee-
Confidence 000 1113459999999999999999999999999999999998 89999999999999999999999999976
Q ss_pred cCCCceeEEEEEcCCHH
Q 015716 169 MEGSSVPLVVKWADTEK 185 (402)
Q Consensus 169 ~~g~~~~l~v~~a~~~~ 185 (402)
++++ .|+-.||..|.
T Consensus 129 lG~R--~IRTNWATRKp 143 (321)
T KOG0148|consen 129 LGRR--TIRTNWATRKP 143 (321)
T ss_pred eccc--eeeccccccCc
Confidence 6654 69999998775
No 15
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=3.6e-32 Score=266.68 Aligned_cols=168 Identities=20% Similarity=0.347 Sum_probs=148.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCcc
Q 015716 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (402)
Q Consensus 11 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~ 90 (402)
....++|||+|||+++++++|+++|++||+|.+|++++|+.|++++|||||+|.+.++|++|++.||+.. +.| +.|+
T Consensus 104 ~~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~-i~G--R~Ik 180 (612)
T TIGR01645 104 LAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQM-LGG--RNIK 180 (612)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeE-Eec--ceee
Confidence 4567899999999999999999999999999999999999999999999999999999999999997655 666 6666
Q ss_pred ccccCccc------------ccccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHH
Q 015716 91 VKYADGEL------------ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQAL 157 (402)
Q Consensus 91 ~~~~~~~~------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~ 157 (402)
+.+..... ....++|||+||+.++++++|+++|+.||.|.+++|.++. +++++|||||+|.+.++|.
T Consensus 181 V~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~ 260 (612)
T TIGR01645 181 VGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQS 260 (612)
T ss_pred ecccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHH
Confidence 65543211 1224689999999999999999999999999999999987 6789999999999999999
Q ss_pred HHHHHHcCCcccCCCceeEEEEEcCCH
Q 015716 158 AALEAINGKHKMEGSSVPLVVKWADTE 184 (402)
Q Consensus 158 ~A~~~l~g~~~~~g~~~~l~v~~a~~~ 184 (402)
+|++.||+.. ++|+ .|+|.++..+
T Consensus 261 kAI~amNg~e-lgGr--~LrV~kAi~p 284 (612)
T TIGR01645 261 EAIASMNLFD-LGGQ--YLRVGKCVTP 284 (612)
T ss_pred HHHHHhCCCe-eCCe--EEEEEecCCC
Confidence 9999999987 7776 5889988764
No 16
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.3e-33 Score=260.88 Aligned_cols=217 Identities=26% Similarity=0.453 Sum_probs=190.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCcccccc
Q 015716 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYA 94 (402)
Q Consensus 15 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~~~~~ 94 (402)
..|||+ +++||.+|.++|+++|+|+++++.+|- | +.|||||.|.++++|++||+.|| ...+.| +++++.|+
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n-~~~~~~--~~~rim~s 72 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMN-FDVLKG--KPIRIMWS 72 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcC-CcccCC--cEEEeehh
Confidence 468999 999999999999999999999999998 7 99999999999999999999995 455777 88888887
Q ss_pred CcccccccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCce
Q 015716 95 DGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 174 (402)
Q Consensus 95 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~ 174 (402)
..+... +||.||+++++..+|.++|+.||+|++|++.++.+| ++|| ||+|+++++|++|++++||.. +.++
T Consensus 73 ~rd~~~----~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~l-l~~k-- 143 (369)
T KOG0123|consen 73 QRDPSL----VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGML-LNGK-- 143 (369)
T ss_pred ccCCce----eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcc-cCCC--
Confidence 655443 999999999999999999999999999999999988 8999 999999999999999999976 6665
Q ss_pred eEEEEEcCCHHHHHHHHHHHHHhhcCCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCCCCCCcCCCCCCCCCCCCCCCCC
Q 015716 175 PLVVKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGI 254 (402)
Q Consensus 175 ~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 254 (402)
+|.|.....+.++.......
T Consensus 144 ki~vg~~~~~~er~~~~~~~------------------------------------------------------------ 163 (369)
T KOG0123|consen 144 KIYVGLFERKEEREAPLGEY------------------------------------------------------------ 163 (369)
T ss_pred eeEEeeccchhhhcccccch------------------------------------------------------------
Confidence 58998888877765331110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCC
Q 015716 255 IPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSS 334 (402)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (402)
T Consensus 164 -------------------------------------------------------------------------------- 163 (369)
T KOG0123|consen 164 -------------------------------------------------------------------------------- 163 (369)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCcccCCCCccEEEecCCCCCCHHHHHHHhhccCcEEEEEEEEeCCCCCcceEEEEEeecC
Q 015716 335 SGGTGSGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGKYTVDLD 401 (402)
Q Consensus 335 ~~~~~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~fG~v~~~~i~~d~~tg~skG~gFV~f~~~ 401 (402)
...-+++||.|++.+.++++|.++|+.||.|.++.|+.+. +|+++|||||.|.++
T Consensus 164 -----------~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~-~g~~~~~gfv~f~~~ 218 (369)
T KOG0123|consen 164 -----------KKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDS-IGKSKGFGFVNFENP 218 (369)
T ss_pred -----------hhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecC-CCCCCCccceeecCh
Confidence 0023469999999999999999999999999999999997 788999999999873
No 17
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4e-32 Score=254.98 Aligned_cols=236 Identities=29% Similarity=0.470 Sum_probs=194.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCccccc
Q 015716 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKY 93 (402)
Q Consensus 14 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~~~~ 93 (402)
...|||.||++++|..+|.++|+.||.|++|++..|.. | ++|| ||+|+++++|++||+.+|+.. +.+ +.+.+..
T Consensus 76 ~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~l-l~~--kki~vg~ 149 (369)
T KOG0123|consen 76 PSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGML-LNG--KKIYVGL 149 (369)
T ss_pred CceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcc-cCC--CeeEEee
Confidence 33399999999999999999999999999999999985 5 9999 999999999999999996654 666 6666654
Q ss_pred cCccccc---------ccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHc
Q 015716 94 ADGELER---------LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAIN 164 (402)
Q Consensus 94 ~~~~~~~---------~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 164 (402)
...+.++ ...++++.+++.+.+++.|.++|+.+|.|.++.++.+..+.+++|+||.|.+.++|..|++.|+
T Consensus 150 ~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~ 229 (369)
T KOG0123|consen 150 FERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLN 229 (369)
T ss_pred ccchhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhcc
Confidence 4433332 2557999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCceeEEEEEcCCHHHHHHHHHHHHHhh-cCCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCCCCCCcCCCCCC
Q 015716 165 GKHKMEGSSVPLVVKWADTEKERQARRAQKAQSQ-ANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLP 243 (402)
Q Consensus 165 g~~~~~g~~~~l~v~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 243 (402)
+.. .++. .+.|..+..+.++.....+..... ....
T Consensus 230 ~~~-~~~~--~~~V~~aqkk~e~~~~l~~~~~~~~~~~~----------------------------------------- 265 (369)
T KOG0123|consen 230 GKI-FGDK--ELYVGRAQKKSEREAELKRKFEQEFAKRS----------------------------------------- 265 (369)
T ss_pred CCc-CCcc--ceeecccccchhhHHHHhhhhHhhhhhcc-----------------------------------------
Confidence 987 5544 588888877544433322111100 0000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 015716 244 PMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSP 323 (402)
Q Consensus 244 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (402)
T Consensus 266 -------------------------------------------------------------------------------- 265 (369)
T KOG0123|consen 266 -------------------------------------------------------------------------------- 265 (369)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcCCCCCCCCCCCCCCCCCcccCCCCccEEEecCCCCCCHHHHHHHhhccCcEEEEEEEEeCCCCCcceEEEEEeecC
Q 015716 324 AVANSNPSTSSSGGTGSGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGKYTVDLD 401 (402)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~fG~v~~~~i~~d~~tg~skG~gFV~f~~~ 401 (402)
......+|||.||+..++++.|+++|+.||+|.+++|+.+. .|+++|||||.|.++
T Consensus 266 ---------------------~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~-~g~skG~gfV~fs~~ 321 (369)
T KOG0123|consen 266 ---------------------VSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDE-NGKSKGFGFVEFSSP 321 (369)
T ss_pred ---------------------ccccccccccccCccccchhHHHHHHhcccceeeEEEEecc-CCCccceEEEEcCCH
Confidence 01135579999999999999999999999999999999997 899999999999875
No 18
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=2e-31 Score=267.09 Aligned_cols=162 Identities=23% Similarity=0.415 Sum_probs=130.3
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHHhc------------CCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 015716 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEF------------ALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76 (402)
Q Consensus 9 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~------------G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l 76 (402)
......++|||+|||+++|+++|+++|+++ +.|..+.+ ++.+|||||+|.+.++|.+||+ |
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~-l 242 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMA-L 242 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhc-C
Confidence 345577899999999999999999999986 23444443 4467899999999999999995 7
Q ss_pred cCCCCCCCCCCCccccccCcc------------------------------cccccceEEEcCCCCCCcHHHHHHhhccC
Q 015716 77 HNKKTLPGASSPLQVKYADGE------------------------------LERLEHKLFIGMLPKNVSEAEVSALFSIY 126 (402)
Q Consensus 77 ~~~~~~~g~~~~~~~~~~~~~------------------------------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~ 126 (402)
++.. +.| +.|.+...... .....++|||+|||..+++++|+++|+.|
T Consensus 243 ~g~~-~~g--~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~ 319 (509)
T TIGR01642 243 DSII-YSN--VFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESF 319 (509)
T ss_pred CCeE-eeC--ceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 6554 555 55554432110 01124689999999999999999999999
Q ss_pred CCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEEcCC
Q 015716 127 GTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADT 183 (402)
Q Consensus 127 G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~a~~ 183 (402)
|.|..+.++++. +|.++|||||+|.+.++|..|++.|||.. ++|+ .|.|.++..
T Consensus 320 G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~-~~~~--~l~v~~a~~ 374 (509)
T TIGR01642 320 GDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKD-TGDN--KLHVQRACV 374 (509)
T ss_pred CCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCE-ECCe--EEEEEECcc
Confidence 999999999886 78999999999999999999999999988 5655 488888753
No 19
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.98 E-value=1.2e-31 Score=228.85 Aligned_cols=164 Identities=23% Similarity=0.508 Sum_probs=147.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCc
Q 015716 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (402)
Q Consensus 10 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~ 89 (402)
......-|||+.|...++.++|++.|.+||+|.+++|++|..|++++|||||.|.+.++|++||..|++ ..+.+ |.|
T Consensus 58 t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnG-qWlG~--R~I 134 (321)
T KOG0148|consen 58 TSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNG-QWLGR--RTI 134 (321)
T ss_pred ccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCC-eeecc--cee
Confidence 334467899999999999999999999999999999999999999999999999999999999999955 45655 889
Q ss_pred cccccCccccc-----------------ccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCC
Q 015716 90 QVKYADGELER-----------------LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYET 152 (402)
Q Consensus 90 ~~~~~~~~~~~-----------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~ 152 (402)
+..|+..+..+ ..++|||+||+..++|++||+.|++||.|.+|++.++ +||+||+|++
T Consensus 135 RTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~-----qGYaFVrF~t 209 (321)
T KOG0148|consen 135 RTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD-----QGYAFVRFET 209 (321)
T ss_pred eccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc-----cceEEEEecc
Confidence 98888655433 2789999999999999999999999999999999998 8999999999
Q ss_pred HHHHHHHHHHHcCCcccCCCceeEEEEEcCCH
Q 015716 153 KEQALAALEAINGKHKMEGSSVPLVVKWADTE 184 (402)
Q Consensus 153 ~~~A~~A~~~l~g~~~~~g~~~~l~v~~a~~~ 184 (402)
.|.|.+||..+|+.. ++|. .+++.|.+..
T Consensus 210 kEaAahAIv~mNnte-i~G~--~VkCsWGKe~ 238 (321)
T KOG0148|consen 210 KEAAAHAIVQMNNTE-IGGQ--LVRCSWGKEG 238 (321)
T ss_pred hhhHHHHHHHhcCce-eCce--EEEEeccccC
Confidence 999999999999998 7776 4888888654
No 20
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=8.4e-30 Score=243.61 Aligned_cols=171 Identities=25% Similarity=0.455 Sum_probs=148.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCcc
Q 015716 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (402)
Q Consensus 11 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~ 90 (402)
....++|||+|||.++++++|+++|++||.|..++++.+..++.++|||||+|.+.++|++||+.||+.. +.+....+.
T Consensus 86 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~-~~g~~~~i~ 164 (352)
T TIGR01661 86 SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTT-PSGCTEPIT 164 (352)
T ss_pred ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCc-cCCCceeEE
Confidence 4467899999999999999999999999999999999998889999999999999999999999998765 566555566
Q ss_pred ccccCccc------------------------------------------------------------------------
Q 015716 91 VKYADGEL------------------------------------------------------------------------ 98 (402)
Q Consensus 91 ~~~~~~~~------------------------------------------------------------------------ 98 (402)
+.++....
T Consensus 165 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (352)
T TIGR01661 165 VKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRA 244 (352)
T ss_pred EEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccC
Confidence 65543111
Q ss_pred ---------------------ccccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHH
Q 015716 99 ---------------------ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQA 156 (402)
Q Consensus 99 ---------------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A 156 (402)
.....+|||+|||+++++++|+++|++||.|.+++|++|. ++.++|||||+|.+.++|
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A 324 (352)
T TIGR01661 245 SPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEA 324 (352)
T ss_pred CCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHH
Confidence 0002259999999999999999999999999999999998 899999999999999999
Q ss_pred HHHHHHHcCCcccCCCceeEEEEEcCCHH
Q 015716 157 LAALEAINGKHKMEGSSVPLVVKWADTEK 185 (402)
Q Consensus 157 ~~A~~~l~g~~~~~g~~~~l~v~~a~~~~ 185 (402)
.+|+..|||.. ++|+ .|+|.|...+.
T Consensus 325 ~~Ai~~lnG~~-~~gr--~i~V~~~~~~~ 350 (352)
T TIGR01661 325 AMAILSLNGYT-LGNR--VLQVSFKTNKA 350 (352)
T ss_pred HHHHHHhCCCE-ECCe--EEEEEEccCCC
Confidence 99999999987 6775 68999987664
No 21
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.96 E-value=5.7e-29 Score=232.62 Aligned_cols=140 Identities=24% Similarity=0.459 Sum_probs=123.7
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEE
Q 015716 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (402)
Q Consensus 100 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v 178 (402)
...++|||+|||+++++++|+++|+.||.|++|+|++|. +++++|||||+|.++++|++|++.||+.. +.++ +|.|
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~-l~gr--~i~V 181 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGIT-VRNK--RLKV 181 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCc-cCCc--eeee
Confidence 347899999999999999999999999999999999986 79999999999999999999999999987 5554 5888
Q ss_pred EEcCCHHHHHHHHHHHHHhhcCCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCCCCCCcCCCCCCCCCCCCCCCCCCCCC
Q 015716 179 KWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPV 258 (402)
Q Consensus 179 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 258 (402)
.++.+..+
T Consensus 182 ~~a~p~~~------------------------------------------------------------------------ 189 (346)
T TIGR01659 182 SYARPGGE------------------------------------------------------------------------ 189 (346)
T ss_pred eccccccc------------------------------------------------------------------------
Confidence 77653210
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCC
Q 015716 259 NQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGT 338 (402)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (402)
T Consensus 190 -------------------------------------------------------------------------------- 189 (346)
T TIGR01659 190 -------------------------------------------------------------------------------- 189 (346)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccCCCCccEEEecCCCCCCHHHHHHHhhccCcEEEEEEEEeCCCCCcceEEEEEeecC
Q 015716 339 GSGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGKYTVDLD 401 (402)
Q Consensus 339 ~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~fG~v~~~~i~~d~~tg~skG~gFV~f~~~ 401 (402)
....++|||+|||.++||++|+++|++||.|++|+|++|+.||++||||||+|++.
T Consensus 190 -------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~ 245 (346)
T TIGR01659 190 -------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKR 245 (346)
T ss_pred -------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCH
Confidence 00245799999999999999999999999999999999999999999999999763
No 22
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=5.5e-27 Score=213.28 Aligned_cols=170 Identities=25% Similarity=0.422 Sum_probs=147.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCC-eeEEEEeeCCC-CCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCC
Q 015716 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFAL-VDEVNIIKDKT-TRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (402)
Q Consensus 11 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~-v~~v~~~~~~~-t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~ 88 (402)
....|+|||+|||+++++++|++.|++.++ |++|.+..+.+ ..++||||||+|.+..+|..|.++|-..+ +.-+...
T Consensus 161 Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~-~klwgn~ 239 (506)
T KOG0117|consen 161 SVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGK-IKLWGNA 239 (506)
T ss_pred eeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCc-eeecCCc
Confidence 457899999999999999999999999986 78888877643 36899999999999999999998876555 3335589
Q ss_pred ccccccCcccccc------cceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHH
Q 015716 89 LQVKYADGELERL------EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEA 162 (402)
Q Consensus 89 ~~~~~~~~~~~~~------~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~ 162 (402)
+.|.|++++.+.. -..|||+||+.++|+|.|+++|++||.|++|+.++| ||||.|.++++|.+|++.
T Consensus 240 ~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD-------YaFVHf~eR~davkAm~~ 312 (506)
T KOG0117|consen 240 ITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD-------YAFVHFAEREDAVKAMKE 312 (506)
T ss_pred ceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc-------eeEEeecchHHHHHHHHH
Confidence 9999999887654 457999999999999999999999999999998876 999999999999999999
Q ss_pred HcCCcccCCCceeEEEEEcCCHHHHHHHH
Q 015716 163 INGKHKMEGSSVPLVVKWADTEKERQARR 191 (402)
Q Consensus 163 l~g~~~~~g~~~~l~v~~a~~~~~~~~~~ 191 (402)
+||+. ++|. .|.|.+|++..++...+
T Consensus 313 ~ngke-ldG~--~iEvtLAKP~~k~k~~r 338 (506)
T KOG0117|consen 313 TNGKE-LDGS--PIEVTLAKPVDKKKKER 338 (506)
T ss_pred hcCce-ecCc--eEEEEecCChhhhccch
Confidence 99998 7887 48899998876655443
No 23
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=1e-27 Score=222.79 Aligned_cols=172 Identities=28% Similarity=0.433 Sum_probs=145.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCcccc
Q 015716 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVK 92 (402)
Q Consensus 13 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~~~ 92 (402)
+.-+|+|+|||+.+.+.+|+.+|+.||.|.+|.|.+.++++. .|||||.|....+|.+|++.+|+.. +.| +++-|.
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgkl-cGFaFV~fk~~~dA~~Al~~~N~~~-i~g--R~VAVD 191 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKL-CGFAFVQFKEKKDAEKALEFFNGNK-IDG--RPVAVD 191 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCc-cceEEEEEeeHHHHHHHHHhccCce-ecC--ceeEEe
Confidence 367899999999999999999999999999999998877444 4999999999999999999997766 666 777777
Q ss_pred ccCcccccc-----------------------------------------------------------------------
Q 015716 93 YADGELERL----------------------------------------------------------------------- 101 (402)
Q Consensus 93 ~~~~~~~~~----------------------------------------------------------------------- 101 (402)
|+-.+..-.
T Consensus 192 WAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S 271 (678)
T KOG0127|consen 192 WAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESS 271 (678)
T ss_pred eecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhcccccccccccccccccc
Confidence 752110000
Q ss_pred --------------------cceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHH
Q 015716 102 --------------------EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAAL 160 (402)
Q Consensus 102 --------------------~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~ 160 (402)
..+|||+|||+++|+++|++.|++||+|.++.|+.++ ++.++|.|||.|.+..+|++||
T Consensus 272 ~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci 351 (678)
T KOG0127|consen 272 GKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCI 351 (678)
T ss_pred ccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHH
Confidence 3689999999999999999999999999999999888 8999999999999999999999
Q ss_pred HHH-----cCCcccCCCceeEEEEEcCCHHHHHHH
Q 015716 161 EAI-----NGKHKMEGSSVPLVVKWADTEKERQAR 190 (402)
Q Consensus 161 ~~l-----~g~~~~~g~~~~l~v~~a~~~~~~~~~ 190 (402)
+.. .|..+++|+ .|.|..|..+++...-
T Consensus 352 ~~Aspa~e~g~~ll~GR--~Lkv~~Av~RkeA~dm 384 (678)
T KOG0127|consen 352 EAASPASEDGSVLLDGR--LLKVTLAVTRKEAADM 384 (678)
T ss_pred HhcCccCCCceEEEecc--EEeeeeccchHHHHHH
Confidence 876 344567776 5889999888765443
No 24
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.95 E-value=2e-27 Score=233.18 Aligned_cols=161 Identities=27% Similarity=0.449 Sum_probs=133.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCC-eeEEEEee-CCCCCCcccEEEEEeCCHHHHHHHHHHhcCCC-CCCCCCCC
Q 015716 12 EERVKLFVGQVPKHMTEAQLLAMFKEFAL-VDEVNIIK-DKTTRASRGCCFVICPSRQEADKAVNACHNKK-TLPGASSP 88 (402)
Q Consensus 12 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~-v~~v~~~~-~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~-~~~g~~~~ 88 (402)
.+.++|||+|||.++++++|.+.|++++. ++++.++. ...+++++|||||+|.++++|.+|++.|++.. .+.+ +.
T Consensus 136 ~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~G--r~ 213 (578)
T TIGR01648 136 VDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--HV 213 (578)
T ss_pred ccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecC--ce
Confidence 45789999999999999999999999974 45554433 23456899999999999999999999886543 2444 77
Q ss_pred ccccccCccccc------ccceEEEcCCCCCCcHHHHHHhhccC--CCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHH
Q 015716 89 LQVKYADGELER------LEHKLFIGMLPKNVSEAEVSALFSIY--GTIKDLQILRGSQQTSKGCAFLKYETKEQALAAL 160 (402)
Q Consensus 89 ~~~~~~~~~~~~------~~~~l~v~nlp~~~t~~~l~~~f~~~--G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~ 160 (402)
|.+.|+.++.+. ..++|||+||+.++++++|+++|++| |+|++|++++ +||||+|.+.++|.+|+
T Consensus 214 I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r-------gfAFVeF~s~e~A~kAi 286 (578)
T TIGR01648 214 IAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR-------DYAFVHFEDREDAVKAM 286 (578)
T ss_pred EEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec-------CeEEEEeCCHHHHHHHH
Confidence 888887654432 25689999999999999999999999 9999998764 59999999999999999
Q ss_pred HHHcCCcccCCCceeEEEEEcCCH
Q 015716 161 EAINGKHKMEGSSVPLVVKWADTE 184 (402)
Q Consensus 161 ~~l~g~~~~~g~~~~l~v~~a~~~ 184 (402)
+.|||.. ++|+ .|.|.|+.+.
T Consensus 287 ~~lnG~~-i~Gr--~I~V~~Akp~ 307 (578)
T TIGR01648 287 DELNGKE-LEGS--EIEVTLAKPV 307 (578)
T ss_pred HHhCCCE-ECCE--EEEEEEccCC
Confidence 9999987 6765 5899999764
No 25
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=5.9e-28 Score=218.54 Aligned_cols=141 Identities=28% Similarity=0.569 Sum_probs=132.0
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEE
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~ 180 (402)
..++||+-||..|+|.|||++|++||.|.+|.|++|+ ++.++|||||.|.+.++|.+|+..||....+.|...+|.|++
T Consensus 34 ~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~ 113 (510)
T KOG0144|consen 34 AVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKY 113 (510)
T ss_pred hhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecc
Confidence 5689999999999999999999999999999999998 899999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhhcCCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCC
Q 015716 181 ADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQ 260 (402)
Q Consensus 181 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 260 (402)
|+.++++.
T Consensus 114 Ad~E~er~------------------------------------------------------------------------ 121 (510)
T KOG0144|consen 114 ADGERERI------------------------------------------------------------------------ 121 (510)
T ss_pred cchhhhcc------------------------------------------------------------------------
Confidence 99887652
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCC
Q 015716 261 GNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGS 340 (402)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (402)
T Consensus 122 -------------------------------------------------------------------------------- 121 (510)
T KOG0144|consen 122 -------------------------------------------------------------------------------- 121 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccCCCCccEEEecCCCCCCHHHHHHHhhccCcEEEEEEEEeCCCCCcceEEEEEeecC
Q 015716 341 GGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGKYTVDLD 401 (402)
Q Consensus 341 ~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~fG~v~~~~i~~d~~tg~skG~gFV~f~~~ 401 (402)
++.++|||+-|+..+||.+++++|++||.|++|.|++|+ .|.|||||||+|.+.
T Consensus 122 ------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstk 175 (510)
T KOG0144|consen 122 ------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTK 175 (510)
T ss_pred ------ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehH
Confidence 145579999999999999999999999999999999998 899999999999863
No 26
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.95 E-value=2.9e-27 Score=232.16 Aligned_cols=149 Identities=19% Similarity=0.350 Sum_probs=121.6
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEE
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~ 180 (402)
.++|||+||++++++++|+++|++||.|.+|+|++|+ +++++|||||+|.+.++|++|++.|||.. ++|+. |+|.+
T Consensus 107 ~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~-i~GR~--IkV~r 183 (612)
T TIGR01645 107 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQM-LGGRN--IKVGR 183 (612)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeE-Eecce--eeecc
Confidence 5789999999999999999999999999999999986 89999999999999999999999999987 77764 66653
Q ss_pred cCCHHHHHHHHHHHHHhhcCCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCC
Q 015716 181 ADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQ 260 (402)
Q Consensus 181 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 260 (402)
....... .+ ..
T Consensus 184 p~~~p~a------------------~~----------------~~----------------------------------- 194 (612)
T TIGR01645 184 PSNMPQA------------------QP----------------II----------------------------------- 194 (612)
T ss_pred ccccccc------------------cc----------------cc-----------------------------------
Confidence 2110000 00 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCC
Q 015716 261 GNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGS 340 (402)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (402)
.
T Consensus 195 -------------------------------------------------------------------------------~ 195 (612)
T TIGR01645 195 -------------------------------------------------------------------------------D 195 (612)
T ss_pred -------------------------------------------------------------------------------c
Confidence 0
Q ss_pred CCcccCCCCccEEEecCCCCCCHHHHHHHhhccCcEEEEEEEEeCCCCCcceEEEEEeecC
Q 015716 341 GGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGKYTVDLD 401 (402)
Q Consensus 341 ~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~fG~v~~~~i~~d~~tg~skG~gFV~f~~~ 401 (402)
.........++|||+|||+++++++|+++|+.||.|++|+|++|+.+|++||||||+|.+.
T Consensus 196 ~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~ 256 (612)
T TIGR01645 196 MVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNL 256 (612)
T ss_pred cccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCH
Confidence 0000011345899999999999999999999999999999999999999999999999873
No 27
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.95 E-value=2.2e-27 Score=191.50 Aligned_cols=170 Identities=26% Similarity=0.436 Sum_probs=148.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCcc
Q 015716 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (402)
Q Consensus 11 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~ 90 (402)
.....+|||+||+..++++-|.++|-+.|+|.++++.+|+.+...+|||||+|.++|+|+-||+.|+ ...+.| ++|+
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln-~VkLYg--rpIr 82 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILN-MVKLYG--RPIR 82 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHH-HHHhcC--ceeE
Confidence 4467899999999999999999999999999999999999999999999999999999999999997 544777 8888
Q ss_pred ccccCc--ccccccceEEEcCCCCCCcHHHHHHhhccCCCeeE-EEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCC
Q 015716 91 VKYADG--ELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKD-LQILRGS-QQTSKGCAFLKYETKEQALAALEAINGK 166 (402)
Q Consensus 91 ~~~~~~--~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~-~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~ 166 (402)
+..+.. +......+|||+||.+.+++..|.+.|+.||.+.. -++++++ +|.++|||||.|.+.|.+.+|+.++||+
T Consensus 83 v~kas~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq 162 (203)
T KOG0131|consen 83 VNKASAHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQ 162 (203)
T ss_pred EEecccccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccc
Confidence 877652 23334678999999999999999999999998766 4788887 6889999999999999999999999998
Q ss_pred cccCCCceeEEEEEcCCHHH
Q 015716 167 HKMEGSSVPLVVKWADTEKE 186 (402)
Q Consensus 167 ~~~~g~~~~l~v~~a~~~~~ 186 (402)
. +. ++++.|.++..+..
T Consensus 163 ~-l~--nr~itv~ya~k~~~ 179 (203)
T KOG0131|consen 163 Y-LC--NRPITVSYAFKKDT 179 (203)
T ss_pred h-hc--CCceEEEEEEecCC
Confidence 6 44 45688888765543
No 28
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.94 E-value=6.6e-27 Score=224.24 Aligned_cols=230 Identities=23% Similarity=0.342 Sum_probs=178.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCc
Q 015716 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (402)
Q Consensus 10 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~ 89 (402)
..+..+.|+|+|||..+..++|...|..||+|..+.+... |. -++|+|.+..+|.+|.+.|....+. ..++
T Consensus 381 ~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~---G~---~aiv~fl~p~eAr~Afrklaysr~k---~~pl 451 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPG---GT---GAIVEFLNPLEARKAFRKLAYSRFK---SAPL 451 (725)
T ss_pred hhhhcceeeeccCccccccHHHHHHhhcccccceeecCcc---cc---eeeeeecCccchHHHHHHhchhhhc---cCcc
Confidence 4566789999999999999999999999999999954422 21 4999999999999999998665532 2344
Q ss_pred cccccCccccc---------------------------------------------------ccceEEEcCCCCCCcHHH
Q 015716 90 QVKYADGELER---------------------------------------------------LEHKLFIGMLPKNVSEAE 118 (402)
Q Consensus 90 ~~~~~~~~~~~---------------------------------------------------~~~~l~v~nlp~~~t~~~ 118 (402)
++.|+....-. ..++|||.||+++.+.++
T Consensus 452 yle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~ 531 (725)
T KOG0110|consen 452 YLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLED 531 (725)
T ss_pred ccccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhH
Confidence 44433100000 023499999999999999
Q ss_pred HHHhhccCCCeeEEEEeeCCCCC----cceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEEcCCHHHHHHHHHHH
Q 015716 119 VSALFSIYGTIKDLQILRGSQQT----SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQARRAQK 194 (402)
Q Consensus 119 l~~~f~~~G~v~~~~i~~~~~~~----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~a~~~~~~~~~~~~~ 194 (402)
|..+|...|.|.++.|...++.. |.|||||+|.+.++|++|++.|+|.. ++|+. |.|+++..+......
T Consensus 532 l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtv-ldGH~--l~lk~S~~k~~~~~g---- 604 (725)
T KOG0110|consen 532 LEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTV-LDGHK--LELKISENKPASTVG---- 604 (725)
T ss_pred HHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCce-ecCce--EEEEeccCccccccc----
Confidence 99999999999999887665443 55999999999999999999999987 88875 666666522110000
Q ss_pred HHhhcCCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 015716 195 AQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSN 274 (402)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (402)
.
T Consensus 605 K------------------------------------------------------------------------------- 605 (725)
T KOG0110|consen 605 K------------------------------------------------------------------------------- 605 (725)
T ss_pred c-------------------------------------------------------------------------------
Confidence 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCcccCCCCccEEE
Q 015716 275 MGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSGGQIEGPPGANLFI 354 (402)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV 354 (402)
.......+++|.|
T Consensus 606 -------------------------------------------------------------------~~~~kk~~tKIlV 618 (725)
T KOG0110|consen 606 -------------------------------------------------------------------KKSKKKKGTKILV 618 (725)
T ss_pred -------------------------------------------------------------------ccccccccceeee
Confidence 0000123678999
Q ss_pred ecCCCCCCHHHHHHHhhccCcEEEEEEEEeCCCCCcceEEEEEeecC
Q 015716 355 YHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGKYTVDLD 401 (402)
Q Consensus 355 ~nLp~~~t~~~L~~~F~~fG~v~~~~i~~d~~tg~skG~gFV~f~~~ 401 (402)
+|||+..+-.+++++|+.||.|.+|+|++....+-+||||||+|-+|
T Consensus 619 RNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~ 665 (725)
T KOG0110|consen 619 RNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTP 665 (725)
T ss_pred eccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCc
Confidence 99999999999999999999999999998866778999999999875
No 29
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.94 E-value=9.2e-25 Score=197.97 Aligned_cols=150 Identities=19% Similarity=0.380 Sum_probs=130.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHH-hcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCcccc
Q 015716 14 RVKLFVGQVPKHMTEAQLLAMFK-EFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVK 92 (402)
Q Consensus 14 ~~~l~V~nLp~~~t~~~L~~~f~-~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~~~ 92 (402)
.+.+||.|||+++.|.+|++||. +.|+|+.|.++.|.. +++||||.|+|+++|.+++|++.|+... +.| ++|.++
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~-GK~rGcavVEFk~~E~~qKa~E~lnk~~-~~G--R~l~vK 119 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDES-GKARGCAVVEFKDPENVQKALEKLNKYE-VNG--RELVVK 119 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccC-CCcCCceEEEeeCHHHHHHHHHHhhhcc-ccC--ceEEEe
Confidence 45699999999999999999997 479999999999985 9999999999999999999999995544 666 677665
Q ss_pred ccCcccccc-----------------------------------------------------------------------
Q 015716 93 YADGELERL----------------------------------------------------------------------- 101 (402)
Q Consensus 93 ~~~~~~~~~----------------------------------------------------------------------- 101 (402)
-...++...
T Consensus 120 Ed~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl 199 (608)
T KOG4212|consen 120 EDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGL 199 (608)
T ss_pred ccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccc
Confidence 443211110
Q ss_pred ---------------cceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCC
Q 015716 102 ---------------EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 166 (402)
Q Consensus 102 ---------------~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 166 (402)
..++||.||.+.+..+.|++.|.-.|.|+++.+--|+.|.++|++.++|.++-+|..||.++++.
T Consensus 200 ~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~ 279 (608)
T KOG4212|consen 200 SASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQ 279 (608)
T ss_pred hhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccC
Confidence 34689999999999999999999999999999999999999999999999999999999999974
Q ss_pred c
Q 015716 167 H 167 (402)
Q Consensus 167 ~ 167 (402)
-
T Consensus 280 g 280 (608)
T KOG4212|consen 280 G 280 (608)
T ss_pred C
Confidence 4
No 30
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=3e-26 Score=194.57 Aligned_cols=174 Identities=25% Similarity=0.456 Sum_probs=153.7
Q ss_pred ccccCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCC
Q 015716 6 KEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGA 85 (402)
Q Consensus 6 ~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~ 85 (402)
++..+......|||.+||+.+|..||.++|++||.|..-+|+.|..||.+||.|||.|+..++|++||+.||+.+ -.|.
T Consensus 119 RPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~-P~g~ 197 (360)
T KOG0145|consen 119 RPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQK-PSGC 197 (360)
T ss_pred cCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCC-CCCC
Confidence 455667788999999999999999999999999999999999999999999999999999999999999997776 7788
Q ss_pred CCCccccccCcccccc----------------------------------------------------------------
Q 015716 86 SSPLQVKYADGELERL---------------------------------------------------------------- 101 (402)
Q Consensus 86 ~~~~~~~~~~~~~~~~---------------------------------------------------------------- 101 (402)
..+|.|+++.......
T Consensus 198 tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~ 277 (360)
T KOG0145|consen 198 TEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGG 277 (360)
T ss_pred CCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCC
Confidence 8888888875322111
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEE
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~ 180 (402)
.-+|||-||.++.+|..|.++|.+||.|..|+|++|. +.+.|||+||...+-++|..|+..|||.. ++++ .|.|.|
T Consensus 278 g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~-lg~r--vLQVsF 354 (360)
T KOG0145|consen 278 GWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYR-LGDR--VLQVSF 354 (360)
T ss_pred eeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCcc-ccce--EEEEEE
Confidence 4479999999999999999999999999999999998 58999999999999999999999999987 6766 477776
Q ss_pred cCC
Q 015716 181 ADT 183 (402)
Q Consensus 181 a~~ 183 (402)
-..
T Consensus 355 Ktn 357 (360)
T KOG0145|consen 355 KTN 357 (360)
T ss_pred ecC
Confidence 543
No 31
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=7.9e-26 Score=192.74 Aligned_cols=171 Identities=33% Similarity=0.548 Sum_probs=156.2
Q ss_pred cccCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCC
Q 015716 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (402)
Q Consensus 7 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~ 86 (402)
.+.+..++++|||+-|.+.-.|||++.+|..||.|++|.+.+..+ |.+|||+||.|.+..+|+.||..||+...+.|.+
T Consensus 12 sesrg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d-g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGAS 90 (371)
T KOG0146|consen 12 SESRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD-GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGAS 90 (371)
T ss_pred cccCCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC-CCCCCceEEEeccchHHHHHHHHhcccccCCCCc
Confidence 344455889999999999999999999999999999999999886 9999999999999999999999999999999999
Q ss_pred CCccccccCcccccc-----------------------------------------------------------------
Q 015716 87 SPLQVKYADGELERL----------------------------------------------------------------- 101 (402)
Q Consensus 87 ~~~~~~~~~~~~~~~----------------------------------------------------------------- 101 (402)
..+.|++++.++++.
T Consensus 91 SSLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~ 170 (371)
T KOG0146|consen 91 SSLVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALN 170 (371)
T ss_pred cceEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHh
Confidence 999999999888775
Q ss_pred --------------------------------------------------------------------------------
Q 015716 102 -------------------------------------------------------------------------------- 101 (402)
Q Consensus 102 -------------------------------------------------------------------------------- 101 (402)
T Consensus 171 angl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~ 250 (371)
T KOG0146|consen 171 ANGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGV 250 (371)
T ss_pred hcccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhH
Confidence
Q ss_pred ----------------------------------cceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEE
Q 015716 102 ----------------------------------EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCA 146 (402)
Q Consensus 102 ----------------------------------~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~a 146 (402)
.|+|||-.||.+..+.+|.++|-.||.|.+.++..|+ ++.||+|+
T Consensus 251 ~~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFG 330 (371)
T KOG0146|consen 251 QQYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFG 330 (371)
T ss_pred HHHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhcccccccee
Confidence 7899999999999999999999999999999999998 89999999
Q ss_pred EEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEEc
Q 015716 147 FLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181 (402)
Q Consensus 147 fV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~a 181 (402)
||.|++..+|+.||..|||.. ++-+. |+|..-
T Consensus 331 FVSfDNp~SaQaAIqAMNGFQ-IGMKR--LKVQLK 362 (371)
T KOG0146|consen 331 FVSFDNPASAQAAIQAMNGFQ-IGMKR--LKVQLK 362 (371)
T ss_pred eEecCCchhHHHHHHHhcchh-hhhhh--hhhhhc
Confidence 999999999999999999987 55443 444433
No 32
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=9.8e-24 Score=187.31 Aligned_cols=166 Identities=20% Similarity=0.371 Sum_probs=145.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCccccc
Q 015716 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKY 93 (402)
Q Consensus 14 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~~~~ 93 (402)
.|+|||+.|.+...|+.|+..|..||+|.+|.+..|..|++++|||||+|+-+|.|+.|++.||+. ++.| +.|+|.+
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~-mlGG--RNiKVgr 189 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQ-MLGG--RNIKVGR 189 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccc-cccC--ccccccC
Confidence 589999999999999999999999999999999999999999999999999999999999999655 4777 7777765
Q ss_pred cCc------------ccccccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHH
Q 015716 94 ADG------------ELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAAL 160 (402)
Q Consensus 94 ~~~------------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~ 160 (402)
... +..+.-++|||..+-.+++++||+.+|+.||+|.+|.+-+++ .+.++||+|++|.+..+...|+
T Consensus 190 PsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAi 269 (544)
T KOG0124|consen 190 PSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAI 269 (544)
T ss_pred CCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHh
Confidence 431 112236789999999999999999999999999999999998 4567999999999999999999
Q ss_pred HHHcCCcccCCCceeEEEEEcCCHH
Q 015716 161 EAINGKHKMEGSSVPLVVKWADTEK 185 (402)
Q Consensus 161 ~~l~g~~~~~g~~~~l~v~~a~~~~ 185 (402)
..||-.. ++|. -|+|..+....
T Consensus 270 asMNlFD-LGGQ--yLRVGk~vTPP 291 (544)
T KOG0124|consen 270 ASMNLFD-LGGQ--YLRVGKCVTPP 291 (544)
T ss_pred hhcchhh-cccc--eEecccccCCC
Confidence 9999876 6776 47888776553
No 33
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.92 E-value=3.9e-24 Score=211.54 Aligned_cols=152 Identities=27% Similarity=0.458 Sum_probs=123.4
Q ss_pred ccccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEE
Q 015716 99 ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLV 177 (402)
Q Consensus 99 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~ 177 (402)
++..++|||+|||..+++++|+++|++||.|.+|+|+++. ++.++|||||+|.+.++|.+|+. |+|.. +.|+ .|.
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~-~~g~--~i~ 161 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQM-LLGR--PII 161 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCE-ECCe--eeE
Confidence 4447899999999999999999999999999999999986 78999999999999999999996 89987 5554 477
Q ss_pred EEEcCCHHHHHHHHHHHHHhhcCCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCCCCCCcCCCCCCCCCCCCCCCCCCCC
Q 015716 178 VKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPP 257 (402)
Q Consensus 178 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 257 (402)
|.++..+...... .....
T Consensus 162 v~~~~~~~~~~~~-------~~~~~------------------------------------------------------- 179 (457)
T TIGR01622 162 VQSSQAEKNRAAK-------AATHQ------------------------------------------------------- 179 (457)
T ss_pred Eeecchhhhhhhh-------ccccc-------------------------------------------------------
Confidence 7665433222110 00000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCC
Q 015716 258 VNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGG 337 (402)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (402)
T Consensus 180 -------------------------------------------------------------------------------- 179 (457)
T TIGR01622 180 -------------------------------------------------------------------------------- 179 (457)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcccCCCCccEEEecCCCCCCHHHHHHHhhccCcEEEEEEEEeCCCCCcceEEEEEeecC
Q 015716 338 TGSGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGKYTVDLD 401 (402)
Q Consensus 338 ~~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~fG~v~~~~i~~d~~tg~skG~gFV~f~~~ 401 (402)
....+..++|||+|||.++++++|+++|++||.|.+|+|+.|+.+|++||||||+|.++
T Consensus 180 -----~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~ 238 (457)
T TIGR01622 180 -----PGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDA 238 (457)
T ss_pred -----CCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCH
Confidence 00011356899999999999999999999999999999999999999999999999863
No 34
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.91 E-value=1e-23 Score=211.47 Aligned_cols=167 Identities=23% Similarity=0.356 Sum_probs=137.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCccc
Q 015716 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 91 (402)
Q Consensus 12 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~~ 91 (402)
...++|||+|||..+++++|+++|+.||.|..+.++.+..+|+++|||||+|.+.++|..||+.|++.. +.| +.|.+
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~-~~~--~~l~v 369 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKD-TGD--NKLHV 369 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCE-ECC--eEEEE
Confidence 346899999999999999999999999999999999999899999999999999999999999998776 555 45555
Q ss_pred cccCccc-----------------------------ccccceEEEcCCCCCC----------cHHHHHHhhccCCCeeEE
Q 015716 92 KYADGEL-----------------------------ERLEHKLFIGMLPKNV----------SEAEVSALFSIYGTIKDL 132 (402)
Q Consensus 92 ~~~~~~~-----------------------------~~~~~~l~v~nlp~~~----------t~~~l~~~f~~~G~v~~~ 132 (402)
.++.... .....+|+|.|+.... ..++|+++|++||.|+.|
T Consensus 370 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v 449 (509)
T TIGR01642 370 QRACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINI 449 (509)
T ss_pred EECccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEE
Confidence 4432100 0124678999996421 236799999999999999
Q ss_pred EEeeCC----CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEEcCCH
Q 015716 133 QILRGS----QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 184 (402)
Q Consensus 133 ~i~~~~----~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~a~~~ 184 (402)
.|+++. .+.+.|++||+|.+.++|++|+..|||.. ++|+ .|.|.|....
T Consensus 450 ~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~-~~gr--~v~~~~~~~~ 502 (509)
T TIGR01642 450 VIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRK-FNDR--VVVAAFYGED 502 (509)
T ss_pred EeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCE-ECCe--EEEEEEeCHH
Confidence 998752 34567999999999999999999999988 6775 5888887654
No 35
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.91 E-value=9.1e-25 Score=188.61 Aligned_cols=147 Identities=26% Similarity=0.538 Sum_probs=131.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCcccccc
Q 015716 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYA 94 (402)
Q Consensus 15 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~~~~~ 94 (402)
.+|||+|||..+++.+|+.+|++||+|++|.|+++ ||||..++...|+.||..||+.+ +.| ..|.|+.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYt-Lhg--~nInVeaS 71 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYT-LHG--VNINVEAS 71 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccce-ecc--eEEEEEec
Confidence 57999999999999999999999999999999986 99999999999999999998887 777 77777766
Q ss_pred CcccccccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCce
Q 015716 95 DGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 174 (402)
Q Consensus 95 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~ 174 (402)
+.+ ++...+|+|+||.+.++.++|+..|++||.|.+|+|++| |+||.|+-.++|..|++.|++.. +.|+.
T Consensus 72 ksK-sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd-------y~fvh~d~~eda~~air~l~~~~-~~gk~- 141 (346)
T KOG0109|consen 72 KSK-SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD-------YAFVHFDRAEDAVEAIRGLDNTE-FQGKR- 141 (346)
T ss_pred ccc-CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc-------eeEEEEeeccchHHHHhcccccc-cccce-
Confidence 654 445789999999999999999999999999999999965 99999999999999999999988 77775
Q ss_pred eEEEEEcCC
Q 015716 175 PLVVKWADT 183 (402)
Q Consensus 175 ~l~v~~a~~ 183 (402)
++|..+.+
T Consensus 142 -m~vq~sts 149 (346)
T KOG0109|consen 142 -MHVQLSTS 149 (346)
T ss_pred -eeeeeecc
Confidence 55555544
No 36
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.88 E-value=3e-23 Score=167.67 Aligned_cols=138 Identities=31% Similarity=0.476 Sum_probs=119.9
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEE
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~ 180 (402)
..+|||+||+..++++.|.++|-+.|.|.++.+++|. +...+|||||+|.++|+|+-|++.||... +-|+ +|+|..
T Consensus 9 d~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~Vk-LYgr--pIrv~k 85 (203)
T KOG0131|consen 9 DATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVK-LYGR--PIRVNK 85 (203)
T ss_pred CceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHH-hcCc--eeEEEe
Confidence 6799999999999999999999999999999999998 67789999999999999999999999766 4444 688876
Q ss_pred cCCHHHHHHHHHHHHHhhcCCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCC
Q 015716 181 ADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQ 260 (402)
Q Consensus 181 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 260 (402)
+..... +
T Consensus 86 as~~~~--------------n----------------------------------------------------------- 92 (203)
T KOG0131|consen 86 ASAHQK--------------N----------------------------------------------------------- 92 (203)
T ss_pred cccccc--------------c-----------------------------------------------------------
Confidence 651100 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCC
Q 015716 261 GNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGS 340 (402)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (402)
T Consensus 93 -------------------------------------------------------------------------------- 92 (203)
T KOG0131|consen 93 -------------------------------------------------------------------------------- 92 (203)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccCCCCccEEEecCCCCCCHHHHHHHhhccCcEEEE-EEEEeCCCCCcceEEEEEeec
Q 015716 341 GGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSA-KVFVDKATGVSKCFGKYTVDL 400 (402)
Q Consensus 341 ~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~fG~v~~~-~i~~d~~tg~skG~gFV~f~~ 400 (402)
-..+.+|||+||.++++|.-|.++|+.||.+++. +|++|+.||.++|||||.|++
T Consensus 93 -----l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~s 148 (203)
T KOG0131|consen 93 -----LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYAS 148 (203)
T ss_pred -----ccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechh
Confidence 0135689999999999999999999999999764 799999999999999999964
No 37
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=2.8e-22 Score=178.09 Aligned_cols=149 Identities=20% Similarity=0.358 Sum_probs=123.2
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEE
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~ 180 (402)
-|++||+.|.+++.|+.||..|.+||.|++|.+..|+ +++++|||||+|+-+|.|+-|++.|||.. ++|++ |.|..
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~m-lGGRN--iKVgr 189 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQM-LGGRN--IKVGR 189 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhcccc-ccCcc--ccccC
Confidence 5789999999999999999999999999999999998 99999999999999999999999999976 89886 55543
Q ss_pred cCCHHHHHHHHHHHHHhhcCCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCC
Q 015716 181 ADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQ 260 (402)
Q Consensus 181 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 260 (402)
...-...+......
T Consensus 190 PsNmpQAQpiID~v------------------------------------------------------------------ 203 (544)
T KOG0124|consen 190 PSNMPQAQPIIDMV------------------------------------------------------------------ 203 (544)
T ss_pred CCCCcccchHHHHH------------------------------------------------------------------
Confidence 22221111110000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCC
Q 015716 261 GNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGS 340 (402)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (402)
T Consensus 204 -------------------------------------------------------------------------------- 203 (544)
T KOG0124|consen 204 -------------------------------------------------------------------------------- 203 (544)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccCCCCccEEEecCCCCCCHHHHHHHhhccCcEEEEEEEEeCCCCCcceEEEEEeecC
Q 015716 341 GGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGKYTVDLD 401 (402)
Q Consensus 341 ~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~fG~v~~~~i~~d~~tg~skG~gFV~f~~~ 401 (402)
+.+...-+.|||..+.++++|+||+.+|+.||+|++|++.+++.++.+|||||++|.|.
T Consensus 204 --qeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~ 262 (544)
T KOG0124|consen 204 --QEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNL 262 (544)
T ss_pred --HHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccc
Confidence 00111234699999999999999999999999999999999998889999999999873
No 38
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.86 E-value=8.7e-22 Score=178.68 Aligned_cols=168 Identities=25% Similarity=0.420 Sum_probs=140.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCcccc
Q 015716 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVK 92 (402)
Q Consensus 13 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~~~ 92 (402)
+.++|||++|+++++++.|+++|.+||+|.+|.+++|+.+++++||+||+|.+++.+.+++..- ...+.+ +.+..+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~--~h~~dg--r~ve~k 80 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNAR--THKLDG--RSVEPK 80 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeeccc--ccccCC--ccccce
Confidence 8999999999999999999999999999999999999999999999999999999999998763 223555 555555
Q ss_pred ccCccccc-------ccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHc
Q 015716 93 YADGELER-------LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAIN 164 (402)
Q Consensus 93 ~~~~~~~~-------~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~ 164 (402)
.+.+..+. ...++||+.||.+++++++++.|.+||.|..+.++.|. +.+.+||+||.|.+++.+.+++.. .
T Consensus 81 ~av~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~-~ 159 (311)
T KOG4205|consen 81 RAVSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQ-K 159 (311)
T ss_pred eccCcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceeccc-c
Confidence 54433221 14589999999999999999999999999999999987 788899999999999999998752 2
Q ss_pred CCcccCCCceeEEEEEcCCHHHHH
Q 015716 165 GKHKMEGSSVPLVVKWADTEKERQ 188 (402)
Q Consensus 165 g~~~~~g~~~~l~v~~a~~~~~~~ 188 (402)
... +.++ .+.|+.|.++....
T Consensus 160 f~~-~~gk--~vevkrA~pk~~~~ 180 (311)
T KOG4205|consen 160 FHD-FNGK--KVEVKRAIPKEVMQ 180 (311)
T ss_pred eee-ecCc--eeeEeeccchhhcc
Confidence 222 5555 58899998876554
No 39
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.86 E-value=6.8e-21 Score=171.81 Aligned_cols=161 Identities=19% Similarity=0.259 Sum_probs=122.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCccc
Q 015716 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 91 (402)
Q Consensus 12 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~~ 91 (402)
..++.|++||||++++|+||.+++.+||.|..+.+.+.+. .||++|.++++|...+....... -.-..+++.+
T Consensus 26 ~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn------QAflem~d~~sAvtmv~~y~~~~-p~lr~~~~yi 98 (492)
T KOG1190|consen 26 EPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN------QAFLEMADEESAVTMVNYYTSVT-PVLRGQPIYI 98 (492)
T ss_pred CCcceeEeccCCccccHHHHHHhcccccceeeeeeeccch------hhhhhhcchhhhhheeecccccC-ccccCcceee
Confidence 3778899999999999999999999999999999887654 79999999999988433321110 0001122222
Q ss_pred cccCccc--------------------------------------c---cccceEEEcCCCCCCcHHHHHHhhccCCCee
Q 015716 92 KYADGEL--------------------------------------E---RLEHKLFIGMLPKNVSEAEVSALFSIYGTIK 130 (402)
Q Consensus 92 ~~~~~~~--------------------------------------~---~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~ 130 (402)
.++.... + ..--+++|.|+-+.++-+.|+.+|++||.|.
T Consensus 99 q~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~Vl 178 (492)
T KOG1190|consen 99 QYSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVL 178 (492)
T ss_pred hhhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeE
Confidence 2221000 0 0022578999999999999999999999999
Q ss_pred EEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEEcCC
Q 015716 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADT 183 (402)
Q Consensus 131 ~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~a~~ 183 (402)
.|.-.....+. .|+|+|.+.+.|+.|...|+|+.+++|| +.|+|++++-
T Consensus 179 KIiTF~Knn~F---QALvQy~d~~sAq~AK~aLdGqnIyngc-CtLrId~Skl 227 (492)
T KOG1190|consen 179 KIITFTKNNGF---QALVQYTDAVSAQAAKLALDGQNIYNGC-CTLRIDFSKL 227 (492)
T ss_pred EEEEEecccch---hhhhhccchhhHHHHHHhccCCcccCce-eEEEeehhhc
Confidence 98776553322 4999999999999999999999999998 8899998765
No 40
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.86 E-value=2.7e-21 Score=185.89 Aligned_cols=170 Identities=25% Similarity=0.423 Sum_probs=141.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCC---CcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCc
Q 015716 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTR---ASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (402)
Q Consensus 13 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~---~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~ 89 (402)
..++|||+||+++++.++|..+|.+.|.|.++.|..-++.. .|.|||||+|.+.++|+.|++.|++.. +.| +.+
T Consensus 514 ~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtv-ldG--H~l 590 (725)
T KOG0110|consen 514 TETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTV-LDG--HKL 590 (725)
T ss_pred cchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCce-ecC--ceE
Confidence 44559999999999999999999999999999887765421 356999999999999999999996554 788 666
Q ss_pred cccccC--------cccc--cccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeC-CCCCcceEEEEEeCCHHHHHH
Q 015716 90 QVKYAD--------GELE--RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALA 158 (402)
Q Consensus 90 ~~~~~~--------~~~~--~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~-~~~~~~g~afV~f~~~~~A~~ 158 (402)
.++++. .+.. ....+|+|+|||+..+..+++++|..||.+.+|+|+.. ..+.++|||||+|-+..+|.+
T Consensus 591 ~lk~S~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~n 670 (725)
T KOG0110|consen 591 ELKISENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKN 670 (725)
T ss_pred EEEeccCccccccccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHH
Confidence 666554 1111 22458999999999999999999999999999999987 356779999999999999999
Q ss_pred HHHHHcCCcccCCCceeEEEEEcCCHHHHH
Q 015716 159 ALEAINGKHKMEGSSVPLVVKWADTEKERQ 188 (402)
Q Consensus 159 A~~~l~g~~~~~g~~~~l~v~~a~~~~~~~ 188 (402)
|++.|.+.++ -|+ .|.+.|++....-+
T Consensus 671 A~~al~STHl-yGR--rLVLEwA~~d~~~e 697 (725)
T KOG0110|consen 671 AFDALGSTHL-YGR--RLVLEWAKSDNTME 697 (725)
T ss_pred HHHhhcccce-ech--hhheehhccchHHH
Confidence 9999998885 444 48999998876543
No 41
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.85 E-value=2.3e-19 Score=160.14 Aligned_cols=167 Identities=17% Similarity=0.245 Sum_probs=128.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCC-CCC----
Q 015716 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKT-LPG---- 84 (402)
Q Consensus 10 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~-~~g---- 84 (402)
+...+-.|.|++|-..++|.||.+-++.||+|..+..+..+. .|.|+|++.+.|+.++.......+ +.|
T Consensus 27 k~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r------~alvefedi~~akn~Vnfaa~n~i~i~gq~Al 100 (494)
T KOG1456|consen 27 KPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKR------QALVEFEDIEGAKNCVNFAADNQIYIAGQQAL 100 (494)
T ss_pred CCCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccccc------eeeeeeccccchhhheehhccCcccccCchhh
Confidence 445677899999999999999999999999999888766542 799999999999999875322222 222
Q ss_pred --CCCCccccccCcccccccceEEEcCC--CCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHH
Q 015716 85 --ASSPLQVKYADGELERLEHKLFIGML--PKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAAL 160 (402)
Q Consensus 85 --~~~~~~~~~~~~~~~~~~~~l~v~nl--p~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~ 160 (402)
.+..-++++...+.......|.+.-| -+.+|-+.|+.++...|+|.+|.|++. +| -.|.|+|++.+.|++|.
T Consensus 101 ~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk-ng---VQAmVEFdsv~~AqrAk 176 (494)
T KOG1456|consen 101 FNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK-NG---VQAMVEFDSVEVAQRAK 176 (494)
T ss_pred cccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec-cc---eeeEEeechhHHHHHHH
Confidence 11111222222333333455555544 467999999999999999999999876 33 36999999999999999
Q ss_pred HHHcCCcccCCCceeEEEEEcCCHHHH
Q 015716 161 EAINGKHKMEGSSVPLVVKWADTEKER 187 (402)
Q Consensus 161 ~~l~g~~~~~g~~~~l~v~~a~~~~~~ 187 (402)
..|||..++.|+ +.|+|++|++.+-.
T Consensus 177 ~alNGADIYsGC-CTLKIeyAkP~rln 202 (494)
T KOG1456|consen 177 AALNGADIYSGC-CTLKIEYAKPTRLN 202 (494)
T ss_pred hhcccccccccc-eeEEEEecCcceee
Confidence 999999999998 79999999987544
No 42
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.82 E-value=1.2e-17 Score=154.77 Aligned_cols=161 Identities=17% Similarity=0.286 Sum_probs=120.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCc
Q 015716 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (402)
Q Consensus 10 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~ 89 (402)
+.....-|-+++|||++|++||.++|+.|+ |+++.+.++ +|+..|-|||+|.++|++++|+++ +...+.. +-|
T Consensus 6 e~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~Alkk--dR~~mg~--RYI 78 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR--NGRPSGEAYVEFTSEEDVEKALKK--DRESMGH--RYI 78 (510)
T ss_pred CCCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc--CCCcCcceEEEeechHHHHHHHHh--hHHHhCC--ceE
Confidence 455677888999999999999999999986 577655554 589999999999999999999986 3332222 334
Q ss_pred cccccCcc------------cccccceEEEcCCCCCCcHHHHHHhhccCCCeeE-EEEeeCCCCCcceEEEEEeCCHHHH
Q 015716 90 QVKYADGE------------LERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKD-LQILRGSQQTSKGCAFLKYETKEQA 156 (402)
Q Consensus 90 ~~~~~~~~------------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~-~~i~~~~~~~~~g~afV~f~~~~~A 156 (402)
.|-.+..+ .......|-+++||+.||++||.++|+..--|.. |.++.+..+++.|-|||+|++.+.|
T Consensus 79 EVf~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~a 158 (510)
T KOG4211|consen 79 EVFTAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESA 158 (510)
T ss_pred EEEccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHH
Confidence 33332111 1123567999999999999999999998765544 5567777888999999999999999
Q ss_pred HHHHHHHcCCcccCCCceeEEEEEc
Q 015716 157 LAALEAINGKHKMEGSSVPLVVKWA 181 (402)
Q Consensus 157 ~~A~~~l~g~~~~~g~~~~l~v~~a 181 (402)
++|+..... . ++.+ -|.|-.+
T Consensus 159 e~Al~rhre-~-iGhR--YIEvF~S 179 (510)
T KOG4211|consen 159 EIALGRHRE-N-IGHR--YIEVFRS 179 (510)
T ss_pred HHHHHHHHH-h-hccc--eEEeehh
Confidence 999975442 2 5543 3555444
No 43
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.81 E-value=5.9e-20 Score=159.02 Aligned_cols=72 Identities=31% Similarity=0.586 Sum_probs=63.3
Q ss_pred ceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEEcC
Q 015716 103 HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWAD 182 (402)
Q Consensus 103 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~a~ 182 (402)
.+|||+|||..+++.+|+.+|++||+|++|+|+++ ||||..++...|..|++.|||.. ++|.. |.|+-++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN-------YgFVHiEdktaaedairNLhgYt-Lhg~n--InVeaSk 72 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN-------YGFVHIEDKTAAEDAIRNLHGYT-LHGVN--INVEASK 72 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc-------cceEEeecccccHHHHhhcccce-ecceE--EEEEecc
Confidence 36999999999999999999999999999999954 99999999999999999999977 77754 6666555
Q ss_pred CH
Q 015716 183 TE 184 (402)
Q Consensus 183 ~~ 184 (402)
++
T Consensus 73 sK 74 (346)
T KOG0109|consen 73 SK 74 (346)
T ss_pred cc
Confidence 43
No 44
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.80 E-value=1.3e-19 Score=164.59 Aligned_cols=144 Identities=26% Similarity=0.438 Sum_probs=120.9
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEE
Q 015716 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (402)
Q Consensus 101 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~ 179 (402)
..++|||++|++++++|.|++.|.+||+|.+|.+++|+ +++++||+||+|.+.+...+++..... .++|+. |.++
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h--~~dgr~--ve~k 80 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTH--KLDGRS--VEPK 80 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeeccccc--ccCCcc--ccce
Confidence 46899999999999999999999999999999999998 899999999999999999988865443 377764 6666
Q ss_pred EcCCHHHHHHHHHHHHHhhcCCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCCCCCCcCCCCCCCCCCCCCCCCCCCCCC
Q 015716 180 WADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVN 259 (402)
Q Consensus 180 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 259 (402)
.+.++.+......
T Consensus 81 ~av~r~~~~~~~~------------------------------------------------------------------- 93 (311)
T KOG4205|consen 81 RAVSREDQTKVGR------------------------------------------------------------------- 93 (311)
T ss_pred eccCccccccccc-------------------------------------------------------------------
Confidence 6665533211000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCC
Q 015716 260 QGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTG 339 (402)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (402)
T Consensus 94 -------------------------------------------------------------------------------- 93 (311)
T KOG4205|consen 94 -------------------------------------------------------------------------------- 93 (311)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcccCCCCccEEEecCCCCCCHHHHHHHhhccCcEEEEEEEEeCCCCCcceEEEEEeecC
Q 015716 340 SGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGKYTVDLD 401 (402)
Q Consensus 340 ~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~fG~v~~~~i~~d~~tg~skG~gFV~f~~~ 401 (402)
-.....|||+.||.++++++|++.|.+||.|..+-|+.|+.+.++||||||+|+..
T Consensus 94 ------~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e 149 (311)
T KOG4205|consen 94 ------HLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSE 149 (311)
T ss_pred ------ccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccc
Confidence 00234799999999999999999999999999999999999999999999999864
No 45
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.79 E-value=8.1e-20 Score=171.36 Aligned_cols=166 Identities=27% Similarity=0.461 Sum_probs=141.2
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCC
Q 015716 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (402)
Q Consensus 9 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~ 88 (402)
..+++.++||+-.|+...+.-+|.++|+.+|+|.+|+++.|+.+++++|.|||+|.+.++...||. |.++. +-| .+
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqr-llg--~p 249 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQR-LLG--VP 249 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCc-ccC--ce
Confidence 345677899999999999999999999999999999999999999999999999999999999994 55666 444 56
Q ss_pred ccccccCcccccc---------------cceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCC
Q 015716 89 LQVKYADGELERL---------------EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYET 152 (402)
Q Consensus 89 ~~~~~~~~~~~~~---------------~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~ 152 (402)
+.+.....+.... -..|||+||-+.+++++|+.+|+.||.|+.|.+++|. +|.++||+||+|.+
T Consensus 250 v~vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~ 329 (549)
T KOG0147|consen 250 VIVQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVN 329 (549)
T ss_pred eEecccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEec
Confidence 6665544332211 2238999999999999999999999999999999998 99999999999999
Q ss_pred HHHHHHHHHHHcCCcccCCCceeEEEEEc
Q 015716 153 KEQALAALEAINGKHKMEGSSVPLVVKWA 181 (402)
Q Consensus 153 ~~~A~~A~~~l~g~~~~~g~~~~l~v~~a 181 (402)
.++|++|++.|||.. +-|+. |+|...
T Consensus 330 ~~~ar~a~e~lngfe-lAGr~--ikV~~v 355 (549)
T KOG0147|consen 330 KEDARKALEQLNGFE-LAGRL--IKVSVV 355 (549)
T ss_pred HHHHHHHHHHhccce-ecCce--EEEEEe
Confidence 999999999999955 77775 445443
No 46
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.75 E-value=1.3e-17 Score=135.18 Aligned_cols=146 Identities=18% Similarity=0.338 Sum_probs=123.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCcc
Q 015716 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (402)
Q Consensus 11 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~ 90 (402)
....++|||+|||.++.+.||.++|.+||.|.+|.+.... ....||||+|++..+|+.||.--++.. +.| ..++
T Consensus 3 gr~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYd-ydg--~rLR 76 (241)
T KOG0105|consen 3 GRNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYD-YDG--CRLR 76 (241)
T ss_pred CcccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccc-cCc--ceEE
Confidence 4567999999999999999999999999999999985543 345799999999999999998765544 666 7777
Q ss_pred ccccCcc---------------------------cccccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcc
Q 015716 91 VKYADGE---------------------------LERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSK 143 (402)
Q Consensus 91 ~~~~~~~---------------------------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~ 143 (402)
|.++..- ..+...++.|.+||.+-+|++|++++.+.|.|-...+.+|
T Consensus 77 VEfprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD------ 150 (241)
T KOG0105|consen 77 VEFPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD------ 150 (241)
T ss_pred EEeccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc------
Confidence 7766422 1222568999999999999999999999999999998876
Q ss_pred eEEEEEeCCHHHHHHHHHHHcCCcc
Q 015716 144 GCAFLKYETKEQALAALEAINGKHK 168 (402)
Q Consensus 144 g~afV~f~~~~~A~~A~~~l~g~~~ 168 (402)
|++.|+|...|+.+-|++.|..+.+
T Consensus 151 g~GvV~~~r~eDMkYAvr~ld~~~~ 175 (241)
T KOG0105|consen 151 GVGVVEYLRKEDMKYAVRKLDDQKF 175 (241)
T ss_pred cceeeeeeehhhHHHHHHhhccccc
Confidence 4799999999999999999987653
No 47
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.71 E-value=4.5e-17 Score=133.69 Aligned_cols=84 Identities=29% Similarity=0.385 Sum_probs=76.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCcc
Q 015716 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (402)
Q Consensus 11 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~ 90 (402)
....++|||+|||++++|++|+++|++||.|.+|+|+.|+.|++++|||||+|.+.++|++||+.|++.. +.+ +.|+
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~-i~G--r~l~ 107 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKE-LNG--RHIR 107 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCE-ECC--EEEE
Confidence 4467899999999999999999999999999999999999999999999999999999999999997665 666 7888
Q ss_pred ccccCcc
Q 015716 91 VKYADGE 97 (402)
Q Consensus 91 ~~~~~~~ 97 (402)
+.++..+
T Consensus 108 V~~a~~~ 114 (144)
T PLN03134 108 VNPANDR 114 (144)
T ss_pred EEeCCcC
Confidence 8877644
No 48
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.70 E-value=6.5e-16 Score=130.50 Aligned_cols=158 Identities=22% Similarity=0.426 Sum_probs=130.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHH----HHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCC
Q 015716 13 ERVKLFVGQVPKHMTEAQLLA----MFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (402)
Q Consensus 13 ~~~~l~V~nLp~~~t~~~L~~----~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~ 88 (402)
+..||||.||...+..++|+. +|++||.|.+|...+ |.+.||-|||.|.+.+.|..|++.|+|.. +.| ++
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfp-Fyg--K~ 81 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFP-FYG--KP 81 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCc-ccC--ch
Confidence 444999999999999999999 999999999988765 46799999999999999999999998876 445 56
Q ss_pred ccccccCccc---------------------------------------------------ccccceEEEcCCCCCCcHH
Q 015716 89 LQVKYADGEL---------------------------------------------------ERLEHKLFIGMLPKNVSEA 117 (402)
Q Consensus 89 ~~~~~~~~~~---------------------------------------------------~~~~~~l~v~nlp~~~t~~ 117 (402)
+++.++..+. ......+|+.|||.+++.+
T Consensus 82 mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e 161 (221)
T KOG4206|consen 82 MRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESE 161 (221)
T ss_pred hheecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHH
Confidence 6655553211 1224579999999999999
Q ss_pred HHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEEcC
Q 015716 118 EVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWAD 182 (402)
Q Consensus 118 ~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~a~ 182 (402)
.|..+|.+|.....++++... .+.|||+|.+...|..|...+.|..+-. ...+.|.+++
T Consensus 162 ~l~~lf~qf~g~keir~i~~~----~~iAfve~~~d~~a~~a~~~lq~~~it~--~~~m~i~~a~ 220 (221)
T KOG4206|consen 162 MLSDLFEQFPGFKEIRLIPPR----SGIAFVEFLSDRQASAAQQALQGFKITK--KNTMQITFAK 220 (221)
T ss_pred HHHHHHhhCcccceeEeccCC----CceeEEecchhhhhHHHhhhhccceecc--CceEEecccC
Confidence 999999999999999998753 6789999999999999999999977532 3457777664
No 49
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.68 E-value=2.7e-15 Score=136.93 Aligned_cols=77 Identities=25% Similarity=0.451 Sum_probs=69.4
Q ss_pred cceEEEcCCCCCCcHHHHHHhhc-cCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEE
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFS-IYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~-~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~ 180 (402)
.+.+||.|||+++.|++|+++|. +-|+|+.|.+..|..|++||+|.|+|+++|.+++|++.||... +.|+ +|.|+.
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~-~~GR--~l~vKE 120 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYE-VNGR--ELVVKE 120 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhcc-ccCc--eEEEec
Confidence 56699999999999999999995 5689999999999999999999999999999999999999877 6766 577764
Q ss_pred c
Q 015716 181 A 181 (402)
Q Consensus 181 a 181 (402)
.
T Consensus 121 d 121 (608)
T KOG4212|consen 121 D 121 (608)
T ss_pred c
Confidence 3
No 50
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.66 E-value=1.9e-15 Score=126.42 Aligned_cols=86 Identities=27% Similarity=0.384 Sum_probs=69.6
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC--CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEE
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS--QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~ 179 (402)
-++|||.+||.++...+|+.+|..|-..+.+.+.... +...+-+|||+|.+..+|.+|+.+|||..+-..+.-.|+++
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 6799999999999999999999999777776665432 33456899999999999999999999988544444468888
Q ss_pred EcCCHHHH
Q 015716 180 WADTEKER 187 (402)
Q Consensus 180 ~a~~~~~~ 187 (402)
+|+....+
T Consensus 114 lAKSNtK~ 121 (284)
T KOG1457|consen 114 LAKSNTKR 121 (284)
T ss_pred ehhcCccc
Confidence 88765444
No 51
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.66 E-value=3.7e-16 Score=146.99 Aligned_cols=160 Identities=22% Similarity=0.408 Sum_probs=121.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCcccc
Q 015716 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVK 92 (402)
Q Consensus 13 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~~~ 92 (402)
+..+|||+||.+++++++|+.+|+.||.|+.|.+.+|..||.++|||||+|.+.++|++|++.||+.. +.| +.|+|.
T Consensus 277 p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfe-lAG--r~ikV~ 353 (549)
T KOG0147|consen 277 PMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFE-LAG--RLIKVS 353 (549)
T ss_pred chhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccce-ecC--ceEEEE
Confidence 44459999999999999999999999999999999999899999999999999999999999998843 666 555543
Q ss_pred ccCcccc---------------cc--------------------------------------------------------
Q 015716 93 YADGELE---------------RL-------------------------------------------------------- 101 (402)
Q Consensus 93 ~~~~~~~---------------~~-------------------------------------------------------- 101 (402)
....... ..
T Consensus 354 ~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~ 433 (549)
T KOG0147|consen 354 VVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPA 433 (549)
T ss_pred EeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCcc
Confidence 3210000 00
Q ss_pred ---------cceEEEcCCCC--C-----Cc---HHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHH
Q 015716 102 ---------EHKLFIGMLPK--N-----VS---EAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEA 162 (402)
Q Consensus 102 ---------~~~l~v~nlp~--~-----~t---~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~ 162 (402)
..++.+.|+=. . |+ .+++.+.+.+||+|..|.+-+. +.|+.||.|.+.+.|..|++.
T Consensus 434 ~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~n----s~g~VYvrc~s~~~A~~a~~a 509 (549)
T KOG0147|consen 434 DASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKN----SAGCVYVRCPSAEAAGTAVKA 509 (549)
T ss_pred ccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccC----CCceEEEecCcHHHHHHHHHH
Confidence 11222333311 1 11 2667888899999998887554 459999999999999999999
Q ss_pred HcCCcccCCCceeEEEEEcC
Q 015716 163 INGKHKMEGSSVPLVVKWAD 182 (402)
Q Consensus 163 l~g~~~~~g~~~~l~v~~a~ 182 (402)
|||.. +.|+. |.+.|-.
T Consensus 510 lhgrW-F~gr~--Ita~~~~ 526 (549)
T KOG0147|consen 510 LHGRW-FAGRM--ITAKYLP 526 (549)
T ss_pred Hhhhh-hccce--eEEEEee
Confidence 99986 78774 5665543
No 52
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.65 E-value=2.6e-16 Score=133.14 Aligned_cols=72 Identities=26% Similarity=0.391 Sum_probs=66.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCC
Q 015716 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (402)
Q Consensus 11 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g 84 (402)
+-.-++|||++|++.+..++|+++|++||+|++..|+.|+.|++|||||||+|++.|+|.+|++.- ..+++|
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp--~piIdG 80 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP--NPIIDG 80 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC--CCcccc
Confidence 335689999999999999999999999999999999999999999999999999999999999874 456777
No 53
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.65 E-value=1.2e-15 Score=125.26 Aligned_cols=86 Identities=27% Similarity=0.511 Sum_probs=76.0
Q ss_pred cccccccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCce
Q 015716 96 GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 174 (402)
Q Consensus 96 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~ 174 (402)
.......++|||+|||+++++++|+++|++||.|.+++|+.|. +++++|||||+|.+.++|++|++.||+.. ++|+
T Consensus 28 ~~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~-i~Gr-- 104 (144)
T PLN03134 28 GSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKE-LNGR-- 104 (144)
T ss_pred ccccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCE-ECCE--
Confidence 3334447799999999999999999999999999999999987 78999999999999999999999999987 6765
Q ss_pred eEEEEEcCCH
Q 015716 175 PLVVKWADTE 184 (402)
Q Consensus 175 ~l~v~~a~~~ 184 (402)
.|.|+++..+
T Consensus 105 ~l~V~~a~~~ 114 (144)
T PLN03134 105 HIRVNPANDR 114 (144)
T ss_pred EEEEEeCCcC
Confidence 6888888653
No 54
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.64 E-value=2.4e-15 Score=122.16 Aligned_cols=78 Identities=24% Similarity=0.511 Sum_probs=67.7
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEE
Q 015716 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (402)
Q Consensus 101 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~ 180 (402)
..++|||+|||.++.+.+|.++|.+||.|..|++...+. .-.||||+|++..+|+.||..-+|.. ++|+ .|+|++
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g--~ppfafVeFEd~RDAeDAiygRdGYd-ydg~--rLRVEf 79 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPG--PPPFAFVEFEDPRDAEDAIYGRDGYD-YDGC--RLRVEF 79 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCC--CCCeeEEEecCccchhhhhhcccccc-cCcc--eEEEEe
Confidence 368999999999999999999999999999999865432 25799999999999999999999987 7776 588888
Q ss_pred cCC
Q 015716 181 ADT 183 (402)
Q Consensus 181 a~~ 183 (402)
+..
T Consensus 80 prg 82 (241)
T KOG0105|consen 80 PRG 82 (241)
T ss_pred ccC
Confidence 754
No 55
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.64 E-value=5.9e-15 Score=124.71 Aligned_cols=81 Identities=27% Similarity=0.512 Sum_probs=70.2
Q ss_pred cceEEEcCCCCCCcHHHHHH----hhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEE
Q 015716 102 EHKLFIGMLPKNVSEAEVSA----LFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLV 177 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~----~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~ 177 (402)
..+|||.||++.+..++|++ +|++||+|.+|...+ +.+.+|.|||.|.+.+.|-.|++.|+|..+++ + .++
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k--t~KmRGQA~VvFk~~~~As~A~r~l~gfpFyg-K--~mr 83 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK--TPKMRGQAFVVFKETEAASAALRALQGFPFYG-K--PMR 83 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC--CCCccCceEEEecChhHHHHHHHHhcCCcccC-c--hhh
Confidence 34999999999999999988 999999999988765 46679999999999999999999999988554 4 588
Q ss_pred EEEcCCHHHH
Q 015716 178 VKWADTEKER 187 (402)
Q Consensus 178 v~~a~~~~~~ 187 (402)
|.||..+..-
T Consensus 84 iqyA~s~sdi 93 (221)
T KOG4206|consen 84 IQYAKSDSDI 93 (221)
T ss_pred eecccCccch
Confidence 8898877544
No 56
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.64 E-value=2.8e-15 Score=125.34 Aligned_cols=156 Identities=25% Similarity=0.316 Sum_probs=120.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeC-CCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCC
Q 015716 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKD-KTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (402)
Q Consensus 10 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~-~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~ 88 (402)
+....+||||.+||.++.-.||..+|..|---+.+.+... +....++-+|||.|.+..+|..|+++||+.++-......
T Consensus 30 ~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~st 109 (284)
T KOG1457|consen 30 EPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGST 109 (284)
T ss_pred cccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCce
Confidence 4556899999999999999999999999865566666554 333456689999999999999999999887765443444
Q ss_pred ccccccCc--ccccc-----------------------------------------------------------------
Q 015716 89 LQVKYADG--ELERL----------------------------------------------------------------- 101 (402)
Q Consensus 89 ~~~~~~~~--~~~~~----------------------------------------------------------------- 101 (402)
+++.+++. +..+.
T Consensus 110 LhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~ 189 (284)
T KOG1457|consen 110 LHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSK 189 (284)
T ss_pred eEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhc
Confidence 44444321 11110
Q ss_pred --------------------cceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHH
Q 015716 102 --------------------EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALE 161 (402)
Q Consensus 102 --------------------~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~ 161 (402)
-.+|||.||...++|++|+.+|+.|-....++|.. +.| -..||++|++.+.|..|+.
T Consensus 190 ~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~-~~g--~~vaf~~~~~~~~at~am~ 266 (284)
T KOG1457|consen 190 APSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA-RGG--MPVAFADFEEIEQATDAMN 266 (284)
T ss_pred CCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec-CCC--cceEeecHHHHHHHHHHHH
Confidence 23799999999999999999999997666666543 233 4689999999999999999
Q ss_pred HHcCCcc
Q 015716 162 AINGKHK 168 (402)
Q Consensus 162 ~l~g~~~ 168 (402)
.|+|..+
T Consensus 267 ~lqg~~~ 273 (284)
T KOG1457|consen 267 HLQGNLL 273 (284)
T ss_pred Hhhccee
Confidence 9999763
No 57
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.61 E-value=2e-14 Score=127.89 Aligned_cols=154 Identities=13% Similarity=0.321 Sum_probs=124.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeE--------EEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCC
Q 015716 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDE--------VNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (402)
Q Consensus 13 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~--------v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g 84 (402)
..+.|||.|||.++|.+++.++|++||-|.. |++.++.. |+.+|=|.+.|-..|++..|++.|+... +.|
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~-~rg 210 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDE-LRG 210 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCccc-ccC
Confidence 4567999999999999999999999998765 88999986 9999999999999999999999997665 555
Q ss_pred CCCCccccccCc---------------------------------------ccccccceEEEcCCC----CCCc------
Q 015716 85 ASSPLQVKYADG---------------------------------------ELERLEHKLFIGMLP----KNVS------ 115 (402)
Q Consensus 85 ~~~~~~~~~~~~---------------------------------------~~~~~~~~l~v~nlp----~~~t------ 115 (402)
+.|+|..++- ...+..++|.+.|+= ...+
T Consensus 211 --~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~d 288 (382)
T KOG1548|consen 211 --KKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLND 288 (382)
T ss_pred --cEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHH
Confidence 6666655531 111126689999883 2223
Q ss_pred -HHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCce
Q 015716 116 -EAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 174 (402)
Q Consensus 116 -~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~ 174 (402)
+++|++-+++||.|.+|.|.-. ...|.+-|.|.+.++|..|++.|+|+. ++|+.+
T Consensus 289 lkedl~eec~K~G~v~~vvv~d~---hPdGvvtV~f~n~eeA~~ciq~m~GR~-fdgRql 344 (382)
T KOG1548|consen 289 LKEDLTEECEKFGQVRKVVVYDR---HPDGVVTVSFRNNEEADQCIQTMDGRW-FDGRQL 344 (382)
T ss_pred HHHHHHHHHHHhCCcceEEEecc---CCCceeEEEeCChHHHHHHHHHhcCee-ecceEE
Confidence 3678888999999999988632 346889999999999999999999987 787753
No 58
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.60 E-value=1.9e-13 Score=124.09 Aligned_cols=157 Identities=20% Similarity=0.314 Sum_probs=122.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccE-EEEEeCCHHHHHHHHHHhcCCCCCCCCCCCcccc
Q 015716 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGC-CFVICPSRQEADKAVNACHNKKTLPGASSPLQVK 92 (402)
Q Consensus 14 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~-afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~~~ 92 (402)
--+++|.|+-+-++-|-|..+|++||.|..|.-... +.|| |.|+|.+.+.|+.|...|.+..+..| .+.+++.
T Consensus 150 vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~K-----nn~FQALvQy~d~~sAq~AK~aLdGqnIyng-cCtLrId 223 (492)
T KOG1190|consen 150 VLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTK-----NNGFQALVQYTDAVSAQAAKLALDGQNIYNG-CCTLRID 223 (492)
T ss_pred eEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEec-----ccchhhhhhccchhhHHHHHHhccCCcccCc-eeEEEee
Confidence 346789999999999999999999999988765432 3345 99999999999999999988886665 2444443
Q ss_pred ccCc---------ccccc-------------------------------------------------------cceEEEc
Q 015716 93 YADG---------ELERL-------------------------------------------------------EHKLFIG 108 (402)
Q Consensus 93 ~~~~---------~~~~~-------------------------------------------------------~~~l~v~ 108 (402)
+++- .++++ ...|.|.
T Consensus 224 ~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvs 303 (492)
T KOG1190|consen 224 FSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVS 303 (492)
T ss_pred hhhcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEe
Confidence 3310 00000 2567888
Q ss_pred CCC-CCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEEcCC
Q 015716 109 MLP-KNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADT 183 (402)
Q Consensus 109 nlp-~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~a~~ 183 (402)
||. +.+|.+.|..+|.-||.|.+|+|++++ +--|+|++.+...|+-|++.|+|..+ .|+ +|+|.+++-
T Consensus 304 nln~~~VT~d~LftlFgvYGdVqRVkil~nk----kd~ALIQmsd~~qAqLA~~hL~g~~l-~gk--~lrvt~SKH 372 (492)
T KOG1190|consen 304 NLNEEAVTPDVLFTLFGVYGDVQRVKILYNK----KDNALIQMSDGQQAQLAMEHLEGHKL-YGK--KLRVTLSKH 372 (492)
T ss_pred cCchhccchhHHHHHHhhhcceEEEEeeecC----CcceeeeecchhHHHHHHHHhhccee-cCc--eEEEeeccC
Confidence 886 569999999999999999999999874 34699999999999999999999884 444 588877653
No 59
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=3.8e-15 Score=126.48 Aligned_cols=85 Identities=24% Similarity=0.400 Sum_probs=76.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCc
Q 015716 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (402)
Q Consensus 10 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~ 89 (402)
...+.++|-|.||+.+++|++|.+||.+||.|..|.|.+|+.||.++|||||.|.+.++|.+||+.|++.-. ....|
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gy---d~LIL 261 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGY---DNLIL 261 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCccc---ceEEE
Confidence 344789999999999999999999999999999999999999999999999999999999999999977653 33678
Q ss_pred cccccCcc
Q 015716 90 QVKYADGE 97 (402)
Q Consensus 90 ~~~~~~~~ 97 (402)
++.|++++
T Consensus 262 rvEwskP~ 269 (270)
T KOG0122|consen 262 RVEWSKPS 269 (270)
T ss_pred EEEecCCC
Confidence 88888764
No 60
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.58 E-value=5.6e-15 Score=106.30 Aligned_cols=66 Identities=30% Similarity=0.662 Sum_probs=61.2
Q ss_pred EEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCC
Q 015716 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (402)
Q Consensus 17 l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g 84 (402)
|||+|||.++++++|+++|++||.|..+.+..+ .+++.+|+|||+|.+.++|++|++.|++.. +.+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~-~~~ 66 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKK-ING 66 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEE-ETT
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCE-ECc
Confidence 799999999999999999999999999999998 468999999999999999999999998765 544
No 61
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.54 E-value=8.8e-15 Score=111.78 Aligned_cols=85 Identities=20% Similarity=0.400 Sum_probs=76.1
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 015716 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (402)
Q Consensus 8 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~ 87 (402)
.+....+++|||+||...++|++|.+||+++|+|..|.|=.|+.+....|||||+|.+.++|+.|++.+++.. +.. +
T Consensus 30 ~~a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~Alryisgtr-Ldd--r 106 (153)
T KOG0121|consen 30 LEALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTR-LDD--R 106 (153)
T ss_pred HHHHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCc-ccc--c
Confidence 3456789999999999999999999999999999999999999989999999999999999999999997776 554 7
Q ss_pred CccccccC
Q 015716 88 PLQVKYAD 95 (402)
Q Consensus 88 ~~~~~~~~ 95 (402)
+|.+.|..
T Consensus 107 ~ir~D~D~ 114 (153)
T KOG0121|consen 107 PIRIDWDA 114 (153)
T ss_pred ceeeeccc
Confidence 78777654
No 62
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.53 E-value=2.6e-14 Score=102.81 Aligned_cols=67 Identities=42% Similarity=0.809 Sum_probs=63.2
Q ss_pred EEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCC
Q 015716 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGS 172 (402)
Q Consensus 105 l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~ 172 (402)
|||+|||.++++++|+++|++||.|..+.+..+..+..+++|||+|.+.++|++|++.|+|.. ++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~-~~~~ 67 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKK-INGR 67 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEE-ETTE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCE-ECcc
Confidence 799999999999999999999999999999998788899999999999999999999999976 6665
No 63
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.53 E-value=1.2e-14 Score=124.13 Aligned_cols=143 Identities=26% Similarity=0.459 Sum_probs=118.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCcccccc
Q 015716 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYA 94 (402)
Q Consensus 15 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~~~~~ 94 (402)
..|||++||+.+.+.+|..+|..||.|.+|.+. .||+||+|.+.-+|..||..|++.. +.+.. +.+.++
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~-l~~e~--~vve~~ 70 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKE-LCGER--LVVEHA 70 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCce-eccee--eeeecc
Confidence 579999999999999999999999999998763 2589999999999999999997665 66633 555555
Q ss_pred Ccc---------------------cccccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCH
Q 015716 95 DGE---------------------LERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETK 153 (402)
Q Consensus 95 ~~~---------------------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~ 153 (402)
... .....+.++|.++...+.+.+|.+.|.++|++....+ .++++||+|++.
T Consensus 71 r~~~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~-------~~~~~~v~Fs~~ 143 (216)
T KOG0106|consen 71 RGKRRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA-------RRNFAFVEFSEQ 143 (216)
T ss_pred cccccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh-------hccccceeehhh
Confidence 421 1223678999999999999999999999999866555 267899999999
Q ss_pred HHHHHHHHHHcCCcccCCCceeEEE
Q 015716 154 EQALAALEAINGKHKMEGSSVPLVV 178 (402)
Q Consensus 154 ~~A~~A~~~l~g~~~~~g~~~~l~v 178 (402)
++|.+|++.|++.. +.++. |.+
T Consensus 144 ~da~ra~~~l~~~~-~~~~~--l~~ 165 (216)
T KOG0106|consen 144 EDAKRALEKLDGKK-LNGRR--ISV 165 (216)
T ss_pred hhhhhcchhccchh-hcCce--eee
Confidence 99999999999998 55554 555
No 64
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.50 E-value=4e-14 Score=125.06 Aligned_cols=86 Identities=29% Similarity=0.476 Sum_probs=75.6
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCC
Q 015716 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (402)
Q Consensus 9 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~ 88 (402)
......++|+|.|||+...|.||+..|++||+|.+|.|+.+. +-|||||||+|++.++|++|.++||+.. +.| |+
T Consensus 91 ~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~-VEG--Rk 165 (376)
T KOG0125|consen 91 SSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTV-VEG--RK 165 (376)
T ss_pred CCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcce-eec--eE
Confidence 344566899999999999999999999999999999999985 5699999999999999999999998876 777 88
Q ss_pred ccccccCcccc
Q 015716 89 LQVKYADGELE 99 (402)
Q Consensus 89 ~~~~~~~~~~~ 99 (402)
|.|..+.....
T Consensus 166 IEVn~ATarV~ 176 (376)
T KOG0125|consen 166 IEVNNATARVH 176 (376)
T ss_pred EEEeccchhhc
Confidence 88887765443
No 65
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=1.1e-13 Score=117.73 Aligned_cols=81 Identities=26% Similarity=0.487 Sum_probs=74.6
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEE
Q 015716 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (402)
Q Consensus 101 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~ 179 (402)
..++|-|.||+.++++++|+++|.+||.|.++.|.+|+ +|.+||||||.|.+.++|++||+.|||.-+ ...-|.|+
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gy---d~LILrvE 264 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGY---DNLILRVE 264 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCccc---ceEEEEEE
Confidence 47789999999999999999999999999999999998 899999999999999999999999999763 34568999
Q ss_pred EcCCH
Q 015716 180 WADTE 184 (402)
Q Consensus 180 ~a~~~ 184 (402)
|+.++
T Consensus 265 wskP~ 269 (270)
T KOG0122|consen 265 WSKPS 269 (270)
T ss_pred ecCCC
Confidence 99874
No 66
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.48 E-value=4.6e-13 Score=123.42 Aligned_cols=144 Identities=33% Similarity=0.528 Sum_probs=111.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCccccc
Q 015716 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKY 93 (402)
Q Consensus 14 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~~~~ 93 (402)
.++|||+|||.++++++|.++|.+||.|..+.+..|+.+++++|||||+|.+.++|..|++.+++.. +.| +.+.+.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~-~~~--~~~~v~~ 191 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKE-LEG--RPLRVQK 191 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCe-ECC--ceeEeec
Confidence 6999999999999999999999999999999999998889999999999999999999999997555 666 5565555
Q ss_pred cC----cccc---------------------cccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCC-cceEEE
Q 015716 94 AD----GELE---------------------RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQT-SKGCAF 147 (402)
Q Consensus 94 ~~----~~~~---------------------~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~-~~g~af 147 (402)
.. .... .....+++.+++..++..++...|..+|.+....+.....+. .....+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (306)
T COG0724 192 AQPASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSF 271 (306)
T ss_pred cccccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccc
Confidence 21 1111 115578999999999999999999999999777766554322 223333
Q ss_pred EEeCCHHHHHHHH
Q 015716 148 LKYETKEQALAAL 160 (402)
Q Consensus 148 V~f~~~~~A~~A~ 160 (402)
+.+.....+....
T Consensus 272 ~~~~~~~~~~~~~ 284 (306)
T COG0724 272 VGNEASKDALESN 284 (306)
T ss_pred cchhHHHhhhhhh
Confidence 4444444433333
No 67
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.48 E-value=9.1e-14 Score=100.02 Aligned_cols=66 Identities=32% Similarity=0.593 Sum_probs=59.0
Q ss_pred EEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCC
Q 015716 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (402)
Q Consensus 17 l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g 84 (402)
|||+|||+++++++|+++|+.||.|..+++..++. +..+|+|||+|.+.++|++|++.+++.. +.|
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~-~~g 66 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKE-IDG 66 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEE-ETT
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcE-ECC
Confidence 79999999999999999999999999999999987 8999999999999999999999986444 555
No 68
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.47 E-value=8.9e-14 Score=117.84 Aligned_cols=77 Identities=22% Similarity=0.363 Sum_probs=68.1
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEE
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~ 180 (402)
-.+|||++|++++..|+|++.|++||+|+++.|+.|+ +++|||||||+|++.++|.+|++..| .+++|+. ..|..
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~--piIdGR~--aNcnl 87 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN--PIIDGRK--ANCNL 87 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC--Ccccccc--cccch
Confidence 5689999999999999999999999999999999998 89999999999999999999998544 6799975 44554
Q ss_pred cC
Q 015716 181 AD 182 (402)
Q Consensus 181 a~ 182 (402)
|.
T Consensus 88 A~ 89 (247)
T KOG0149|consen 88 AS 89 (247)
T ss_pred hh
Confidence 43
No 69
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.46 E-value=1.2e-13 Score=122.04 Aligned_cols=80 Identities=24% Similarity=0.437 Sum_probs=72.0
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEE
Q 015716 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (402)
Q Consensus 101 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~ 180 (402)
..++|+|.|||+...+.||+.+|.+||+|.+|+|+.+..| |||||||+|++.++|++|..+|||.. +.|+ +|.|..
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERG-SKGFGFVTmen~~dadRARa~LHgt~-VEGR--kIEVn~ 170 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERG-SKGFGFVTMENPADADRARAELHGTV-VEGR--KIEVNN 170 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCC-CCccceEEecChhhHHHHHHHhhcce-eece--EEEEec
Confidence 3779999999999999999999999999999999987655 69999999999999999999999987 7776 578877
Q ss_pred cCCH
Q 015716 181 ADTE 184 (402)
Q Consensus 181 a~~~ 184 (402)
|..+
T Consensus 171 ATar 174 (376)
T KOG0125|consen 171 ATAR 174 (376)
T ss_pred cchh
Confidence 7654
No 70
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.45 E-value=3.3e-13 Score=118.51 Aligned_cols=76 Identities=14% Similarity=0.173 Sum_probs=66.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCcccc
Q 015716 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVK 92 (402)
Q Consensus 13 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~~~ 92 (402)
..++|||+|||+.+++++|+++|+.||+|++|+|++|+. ++|||||+|.++++|+.||. |++.. +.| +.|.+.
T Consensus 3 ~~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~-l~g--r~V~Vt 75 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGAT-IVD--QSVTIT 75 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCe-eCC--ceEEEE
Confidence 367999999999999999999999999999999999864 56899999999999999995 76665 666 777777
Q ss_pred ccC
Q 015716 93 YAD 95 (402)
Q Consensus 93 ~~~ 95 (402)
+..
T Consensus 76 ~a~ 78 (260)
T PLN03120 76 PAE 78 (260)
T ss_pred ecc
Confidence 765
No 71
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=4.9e-13 Score=127.74 Aligned_cols=170 Identities=20% Similarity=0.356 Sum_probs=127.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCc
Q 015716 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (402)
Q Consensus 10 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~ 89 (402)
......++||++||...++++++++.+.||++...+++.|..++.++||||-+|.+......|+..||++.+ .+ +.+
T Consensus 285 ~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~l-gd--~~l 361 (500)
T KOG0120|consen 285 VPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQL-GD--KKL 361 (500)
T ss_pred cccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhh-cC--cee
Confidence 344668899999999999999999999999999999999999999999999999999999999999988764 33 333
Q ss_pred cccccCcccc-------------------------cccceEEEcCCC--CCCc-H-------HHHHHhhccCCCeeEEEE
Q 015716 90 QVKYADGELE-------------------------RLEHKLFIGMLP--KNVS-E-------AEVSALFSIYGTIKDLQI 134 (402)
Q Consensus 90 ~~~~~~~~~~-------------------------~~~~~l~v~nlp--~~~t-~-------~~l~~~f~~~G~v~~~~i 134 (402)
.+..+-.... .....|...|+= .++. + |+++..+++||.|.+|.|
T Consensus 362 vvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~i 441 (500)
T KOG0120|consen 362 VVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEI 441 (500)
T ss_pred EeehhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEec
Confidence 3333211100 001122222221 1111 1 557788999999999999
Q ss_pred eeC-CC---CCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEEcCCHH
Q 015716 135 LRG-SQ---QTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEK 185 (402)
Q Consensus 135 ~~~-~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~a~~~~ 185 (402)
.++ .+ ...-|..||+|.+.+++++|..+|+|.+ ++++ .|...|.+..+
T Consensus 442 pr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrK-F~nR--tVvtsYydeDk 493 (500)
T KOG0120|consen 442 PRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRK-FANR--TVVASYYDEDK 493 (500)
T ss_pred CCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCce-eCCc--EEEEEecCHHH
Confidence 987 33 3445889999999999999999999998 6766 46667766543
No 72
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.42 E-value=7.5e-13 Score=95.22 Aligned_cols=67 Identities=30% Similarity=0.697 Sum_probs=60.6
Q ss_pred EEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCC
Q 015716 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGS 172 (402)
Q Consensus 105 l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~ 172 (402)
|||+|||+++++++|+++|+.||.|..+.+..++++.++++|||+|.+.++|.+|++.+++.. ++|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~-~~g~ 67 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKE-IDGR 67 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEE-ETTE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcE-ECCE
Confidence 799999999999999999999999999999998778899999999999999999999998766 6665
No 73
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=5e-13 Score=108.05 Aligned_cols=78 Identities=23% Similarity=0.422 Sum_probs=68.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCccc
Q 015716 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 91 (402)
Q Consensus 12 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~~ 91 (402)
.-.++|||+||+.++++.||...|..||+|.+|.|-..+ .|||||+|+++.+|+.|+..|++.. ++| ..+.|
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~-~cG--~r~rV 79 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKD-ICG--SRIRV 79 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCcc-ccC--ceEEE
Confidence 458999999999999999999999999999999997754 5899999999999999999997776 777 66777
Q ss_pred cccCcc
Q 015716 92 KYADGE 97 (402)
Q Consensus 92 ~~~~~~ 97 (402)
++....
T Consensus 80 E~S~G~ 85 (195)
T KOG0107|consen 80 ELSTGR 85 (195)
T ss_pred EeecCC
Confidence 766544
No 74
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.39 E-value=1.9e-12 Score=113.79 Aligned_cols=76 Identities=14% Similarity=0.303 Sum_probs=66.9
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEEc
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~a 181 (402)
.++|||+||++.+++++|+++|+.||+|++|+|+++.. ++|||||+|.+.++|..|+. |||.. +.|+ .|.|.++
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~--~~GfAFVtF~d~eaAe~All-LnG~~-l~gr--~V~Vt~a 77 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE--RSQIAYVTFKDPQGAETALL-LSGAT-IVDQ--SVTITPA 77 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC--CCCEEEEEeCcHHHHHHHHH-hcCCe-eCCc--eEEEEec
Confidence 46899999999999999999999999999999998753 57999999999999999995 99987 6665 4788776
Q ss_pred CC
Q 015716 182 DT 183 (402)
Q Consensus 182 ~~ 183 (402)
..
T Consensus 78 ~~ 79 (260)
T PLN03120 78 ED 79 (260)
T ss_pred cC
Confidence 53
No 75
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.39 E-value=7.1e-13 Score=126.66 Aligned_cols=162 Identities=25% Similarity=0.447 Sum_probs=125.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhc-----------C-CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q 015716 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEF-----------A-LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACH 77 (402)
Q Consensus 10 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~-----------G-~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~ 77 (402)
.....+.++|+++|+.++++....+|..- | .|..|.+-..+ .|||++|.+.++|..|+..
T Consensus 171 ~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~------nfa~ie~~s~~~at~~~~~-- 242 (500)
T KOG0120|consen 171 ATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEK------NFAFIEFRSISEATEAMAL-- 242 (500)
T ss_pred hhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccc------cceeEEecCCCchhhhhcc--
Confidence 34567889999999999999999999763 3 36667665554 4999999999999999764
Q ss_pred CCCCCCCCCCCccccc------------------------cCcccccccceEEEcCCCCCCcHHHHHHhhccCCCeeEEE
Q 015716 78 NKKTLPGASSPLQVKY------------------------ADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133 (402)
Q Consensus 78 ~~~~~~g~~~~~~~~~------------------------~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~ 133 (402)
...++.| .++++.. ..........++||++||..+++.+++++...||.+....
T Consensus 243 ~~~~f~g--~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~ 320 (500)
T KOG0120|consen 243 DGIIFEG--RPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFR 320 (500)
T ss_pred cchhhCC--CCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhhe
Confidence 2233333 2222211 1111222266899999999999999999999999999999
Q ss_pred EeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEEcCCH
Q 015716 134 ILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 184 (402)
Q Consensus 134 i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~a~~~ 184 (402)
++.+. +|.++||||.+|.+......|+..|||.. ++++ .|.|..|...
T Consensus 321 lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~-lgd~--~lvvq~A~~g 369 (500)
T KOG0120|consen 321 LVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQ-LGDK--KLVVQRAIVG 369 (500)
T ss_pred eecccccccccceeeeeeeCCcchhhhhcccchhh-hcCc--eeEeehhhcc
Confidence 99987 68999999999999999999999999998 5555 3677665543
No 76
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.38 E-value=9.8e-13 Score=114.99 Aligned_cols=81 Identities=20% Similarity=0.397 Sum_probs=72.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCcc
Q 015716 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (402)
Q Consensus 11 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~ 90 (402)
..+-+||||.-|+.+++|.+|+..|++||+|+.|+|+.|+.||+++|||||+|+++.+...|.+..++.+ +.| +.|.
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~-Idg--rri~ 174 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIK-IDG--RRIL 174 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCce-ecC--cEEE
Confidence 3567999999999999999999999999999999999999999999999999999999999999987666 666 5555
Q ss_pred cccc
Q 015716 91 VKYA 94 (402)
Q Consensus 91 ~~~~ 94 (402)
|.+.
T Consensus 175 VDvE 178 (335)
T KOG0113|consen 175 VDVE 178 (335)
T ss_pred EEec
Confidence 5544
No 77
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.38 E-value=7.5e-13 Score=109.72 Aligned_cols=84 Identities=29% Similarity=0.432 Sum_probs=75.1
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 015716 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (402)
Q Consensus 8 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~ 87 (402)
..+....++|.|-||-..++.++|+.+|++||.|-+|.|.+|+.|+.++|||||.|.+..+|+.|+++|++. ++.| +
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~-~ldg--R 83 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGA-VLDG--R 83 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcce-eecc--c
Confidence 345667889999999999999999999999999999999999999999999999999999999999999654 4777 6
Q ss_pred Ccccccc
Q 015716 88 PLQVKYA 94 (402)
Q Consensus 88 ~~~~~~~ 94 (402)
.|.|.++
T Consensus 84 elrVq~a 90 (256)
T KOG4207|consen 84 ELRVQMA 90 (256)
T ss_pred eeeehhh
Confidence 6666654
No 78
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.38 E-value=3.5e-12 Score=117.50 Aligned_cols=79 Identities=38% Similarity=0.734 Sum_probs=72.1
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEE
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~ 180 (402)
.++|||+|||.++++++|+++|..||.|..+.+..+. ++.++|||||+|.+.++|..|++.++|.. +.|+ .|.|.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~-~~~~--~~~v~~ 191 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKE-LEGR--PLRVQK 191 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCe-ECCc--eeEeec
Confidence 4899999999999999999999999999999999996 89999999999999999999999999987 6665 577777
Q ss_pred cCC
Q 015716 181 ADT 183 (402)
Q Consensus 181 a~~ 183 (402)
+..
T Consensus 192 ~~~ 194 (306)
T COG0724 192 AQP 194 (306)
T ss_pred ccc
Confidence 654
No 79
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.37 E-value=3.8e-14 Score=114.97 Aligned_cols=79 Identities=24% Similarity=0.521 Sum_probs=71.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCccc
Q 015716 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 91 (402)
Q Consensus 12 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~~ 91 (402)
.++.-|||+|||++.||.||.-+|++||+|++|.+++|+.||+++||||+.|++..+...|+..||+.+ +.| +.|+|
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGik-i~g--RtirV 109 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIK-ILG--RTIRV 109 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCce-ecc--eeEEe
Confidence 356789999999999999999999999999999999999999999999999999999999999998877 444 66666
Q ss_pred cc
Q 015716 92 KY 93 (402)
Q Consensus 92 ~~ 93 (402)
..
T Consensus 110 DH 111 (219)
T KOG0126|consen 110 DH 111 (219)
T ss_pred ee
Confidence 53
No 80
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.37 E-value=7.8e-12 Score=92.12 Aligned_cols=83 Identities=29% Similarity=0.458 Sum_probs=70.7
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEEc
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~a 181 (402)
.+.|||+|||+++|.|+..++|.+||.|..|+|-..+ ..+|-|||.|++..+|.+|++.|+|.. +.+ +.|.|-+.
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k--~TrGTAFVVYedi~dAk~A~dhlsg~n-~~~--ryl~vlyy 92 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK--ETRGTAFVVYEDIFDAKKACDHLSGYN-VDN--RYLVVLYY 92 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecCcc--CcCceEEEEehHhhhHHHHHHHhcccc-cCC--ceEEEEec
Confidence 5689999999999999999999999999999996653 347899999999999999999999987 443 46888888
Q ss_pred CCHHHHHH
Q 015716 182 DTEKERQA 189 (402)
Q Consensus 182 ~~~~~~~~ 189 (402)
.+.+....
T Consensus 93 q~~~~~~~ 100 (124)
T KOG0114|consen 93 QPEDAFKL 100 (124)
T ss_pred CHHHHHHH
Confidence 77655443
No 81
>smart00362 RRM_2 RNA recognition motif.
Probab=99.36 E-value=3.3e-12 Score=91.70 Aligned_cols=66 Identities=39% Similarity=0.657 Sum_probs=60.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCC
Q 015716 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (402)
Q Consensus 16 ~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g 84 (402)
+|||+|||..+++++|+++|++||.|.++.+..++ +.++|+|||+|.+.++|++|++.+++.. +.+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~-~~~ 66 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTK-LGG 66 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcE-ECC
Confidence 58999999999999999999999999999999887 7788999999999999999999997655 444
No 82
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.36 E-value=2.1e-11 Score=110.01 Aligned_cols=150 Identities=17% Similarity=0.217 Sum_probs=108.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCcc
Q 015716 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (402)
Q Consensus 11 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~ 90 (402)
..+...|-.++||+..++.+|..+|.-.-...--+.+.....|+..|.+.|.|.+.|.-+.|++.- +..+.+ +.|.
T Consensus 57 ~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRh--khh~g~--ryie 132 (508)
T KOG1365|consen 57 ADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRH--KHHMGT--RYIE 132 (508)
T ss_pred cCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHhh--hhhccC--Ccee
Confidence 445566778999999999999999975432222222333334777799999999999999999873 232333 4444
Q ss_pred ccccCccc-----------------ccccceEEEcCCCCCCcHHHHHHhhccC----CCeeEEEEeeCCCCCcceEEEEE
Q 015716 91 VKYADGEL-----------------ERLEHKLFIGMLPKNVSEAEVSALFSIY----GTIKDLQILRGSQQTSKGCAFLK 149 (402)
Q Consensus 91 ~~~~~~~~-----------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~----G~v~~~~i~~~~~~~~~g~afV~ 149 (402)
+-.+..+. +...-.|-+++||+++++.++.++|..- |..+.|.+++.++|+..|=|||.
T Consensus 133 vYka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvl 212 (508)
T KOG1365|consen 133 VYKATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVL 212 (508)
T ss_pred eeccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEE
Confidence 43332111 1113457889999999999999999632 35677778888899999999999
Q ss_pred eCCHHHHHHHHHHHc
Q 015716 150 YETKEQALAALEAIN 164 (402)
Q Consensus 150 f~~~~~A~~A~~~l~ 164 (402)
|..+++|+.|+.+-.
T Consensus 213 fa~ee~aq~aL~khr 227 (508)
T KOG1365|consen 213 FACEEDAQFALRKHR 227 (508)
T ss_pred ecCHHHHHHHHHHHH
Confidence 999999999997644
No 83
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.36 E-value=1.4e-12 Score=99.77 Aligned_cols=80 Identities=25% Similarity=0.515 Sum_probs=69.7
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEE
Q 015716 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (402)
Q Consensus 100 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v 178 (402)
+.+++|||+||++.++||+|.++|+++|.|..|.+--|+ +...=|||||+|.+.++|..|++-++|.. ++.+ .|.+
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~Alryisgtr-Lddr--~ir~ 110 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTR-LDDR--PIRI 110 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCc-cccc--ceee
Confidence 347899999999999999999999999999999887776 44456999999999999999999999988 6655 5777
Q ss_pred EEcC
Q 015716 179 KWAD 182 (402)
Q Consensus 179 ~~a~ 182 (402)
.|.-
T Consensus 111 D~D~ 114 (153)
T KOG0121|consen 111 DWDA 114 (153)
T ss_pred eccc
Confidence 7754
No 84
>PLN03213 repressor of silencing 3; Provisional
Probab=99.35 E-value=2.3e-12 Score=119.74 Aligned_cols=80 Identities=20% Similarity=0.337 Sum_probs=69.3
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCH--HHHHHHHHHhcCCCCCCCCC
Q 015716 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSR--QEADKAVNACHNKKTLPGAS 86 (402)
Q Consensus 9 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~--~~a~~ai~~l~~~~~~~g~~ 86 (402)
.......+||||||+++++++||..+|.+||.|.+|.|+++ || ||||||+|.+. +++.+||+.|++.. +.|
T Consensus 5 es~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAE-WKG-- 77 (759)
T PLN03213 5 SSGGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCV-WKG-- 77 (759)
T ss_pred ccCCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCe-ecC--
Confidence 34556799999999999999999999999999999999944 56 89999999987 78999999998777 556
Q ss_pred CCccccccC
Q 015716 87 SPLQVKYAD 95 (402)
Q Consensus 87 ~~~~~~~~~ 95 (402)
+.|+|..++
T Consensus 78 R~LKVNKAK 86 (759)
T PLN03213 78 GRLRLEKAK 86 (759)
T ss_pred ceeEEeecc
Confidence 777777765
No 85
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.35 E-value=3.3e-12 Score=110.36 Aligned_cols=75 Identities=13% Similarity=0.157 Sum_probs=63.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCccc
Q 015716 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 91 (402)
Q Consensus 12 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~~ 91 (402)
....+|||+||++.+|+++|+++|+.||+|.+|+|++|.. .+|+|||+|.++++|+.|+ .|++..+ .+ +.|.+
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~e---t~gfAfVtF~d~~aaetAl-lLnGa~l-~d--~~I~I 75 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGE---YACTAYVTFKDAYALETAV-LLSGATI-VD--QRVCI 75 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCC---cceEEEEEECCHHHHHHHH-hcCCCee-CC--ceEEE
Confidence 3568999999999999999999999999999999999853 4579999999999999999 5767664 44 45555
Q ss_pred cc
Q 015716 92 KY 93 (402)
Q Consensus 92 ~~ 93 (402)
..
T Consensus 76 t~ 77 (243)
T PLN03121 76 TR 77 (243)
T ss_pred Ee
Confidence 44
No 86
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.34 E-value=1.2e-10 Score=108.73 Aligned_cols=145 Identities=19% Similarity=0.263 Sum_probs=106.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeE-EEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCcc
Q 015716 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDE-VNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (402)
Q Consensus 12 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~-v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~ 90 (402)
.....|-+++||+.||++||.++|+-.-.|.. |.++.+.. +++.|-|||+|++.|.|++|+..-. .. +.- +-|.
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~r-gR~tGEAfVqF~sqe~ae~Al~rhr-e~-iGh--RYIE 175 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQR-GRPTGEAFVQFESQESAEIALGRHR-EN-IGH--RYIE 175 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCC-CCcccceEEEecCHHHHHHHHHHHH-Hh-hcc--ceEE
Confidence 46678999999999999999999997665555 45566654 7799999999999999999986521 10 000 0000
Q ss_pred ccc-----------------------------------cC----------------------------------------
Q 015716 91 VKY-----------------------------------AD---------------------------------------- 95 (402)
Q Consensus 91 ~~~-----------------------------------~~---------------------------------------- 95 (402)
+-. ..
T Consensus 176 vF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~ 255 (510)
T KOG4211|consen 176 VFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGR 255 (510)
T ss_pred eehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCcccccccccccccccc
Confidence 000 00
Q ss_pred ----ccc---c------------cccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHH
Q 015716 96 ----GEL---E------------RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQA 156 (402)
Q Consensus 96 ----~~~---~------------~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A 156 (402)
+.. . .....+..++||++.++.+|.++|+..-.+ .|.|-..++|+..|-|+|+|.+.++|
T Consensus 256 ~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~dGr~TGEAdveF~t~eda 334 (510)
T KOG4211|consen 256 DPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGPDGRATGEADVEFATGEDA 334 (510)
T ss_pred ccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCCCCccCCcceeecccchhh
Confidence 000 0 002468899999999999999999986544 77777778899999999999999999
Q ss_pred HHHHHH
Q 015716 157 LAALEA 162 (402)
Q Consensus 157 ~~A~~~ 162 (402)
..|+.+
T Consensus 335 v~Amsk 340 (510)
T KOG4211|consen 335 VGAMGK 340 (510)
T ss_pred Hhhhcc
Confidence 999853
No 87
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.33 E-value=3.6e-12 Score=111.49 Aligned_cols=79 Identities=29% Similarity=0.505 Sum_probs=71.6
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEE
Q 015716 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (402)
Q Consensus 101 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~ 179 (402)
.-+||||+.|+++++|.+|+..|+.||.|+.|.|++|. +|+++|||||+|+++-+..+|.+..+|.. ++|+.+-|.|.
T Consensus 100 Py~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~-Idgrri~VDvE 178 (335)
T KOG0113|consen 100 PYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIK-IDGRRILVDVE 178 (335)
T ss_pred ccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCce-ecCcEEEEEec
Confidence 36799999999999999999999999999999999997 99999999999999999999999999987 88876444444
Q ss_pred E
Q 015716 180 W 180 (402)
Q Consensus 180 ~ 180 (402)
.
T Consensus 179 R 179 (335)
T KOG0113|consen 179 R 179 (335)
T ss_pred c
Confidence 3
No 88
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.32 E-value=3.6e-10 Score=101.82 Aligned_cols=149 Identities=17% Similarity=0.222 Sum_probs=118.0
Q ss_pred CCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCccccccCccccc
Q 015716 21 QVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELER 100 (402)
Q Consensus 21 nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~~~~~~~~~~~ 100 (402)
|-=..+|-+-|..+....|+|..|.|++. ++. .|.|+|++.+.|++|.+.||+-.+..| -+.+++.++++...+
T Consensus 129 Np~YpItvDVly~Icnp~GkVlRIvIfkk--ngV---QAmVEFdsv~~AqrAk~alNGADIYsG-CCTLKIeyAkP~rln 202 (494)
T KOG1456|consen 129 NPQYPITVDVLYTICNPQGKVLRIVIFKK--NGV---QAMVEFDSVEVAQRAKAALNGADIYSG-CCTLKIEYAKPTRLN 202 (494)
T ss_pred cCccccchhhhhhhcCCCCceEEEEEEec--cce---eeEEeechhHHHHHHHhhccccccccc-ceeEEEEecCcceee
Confidence 33456899999999999999999988875 232 699999999999999999998887666 355666665433211
Q ss_pred c-------------------------------------------------------------------------------
Q 015716 101 L------------------------------------------------------------------------------- 101 (402)
Q Consensus 101 ~------------------------------------------------------------------------------- 101 (402)
.
T Consensus 203 V~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~~g~a~p~ 282 (494)
T KOG1456|consen 203 VQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDGRGYASPG 282 (494)
T ss_pred eeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccCCCCCCCC
Confidence 1
Q ss_pred ----cceEEEcCCCC-CCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeE
Q 015716 102 ----EHKLFIGMLPK-NVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPL 176 (402)
Q Consensus 102 ----~~~l~v~nlp~-~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l 176 (402)
.+.+.|.+|.. .++-+.|.++|=.||.|++|++++.+ .|-|.|+..+..+.++|+..||+..+++++ |
T Consensus 283 g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk----~gtamVemgd~~aver~v~hLnn~~lfG~k---l 355 (494)
T KOG1456|consen 283 GGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK----PGTAMVEMGDAYAVERAVTHLNNIPLFGGK---L 355 (494)
T ss_pred CCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc----cceeEEEcCcHHHHHHHHHHhccCccccce---E
Confidence 44678888874 46778899999999999999999864 467999999999999999999999865543 6
Q ss_pred EEEEcC
Q 015716 177 VVKWAD 182 (402)
Q Consensus 177 ~v~~a~ 182 (402)
.|..++
T Consensus 356 ~v~~Sk 361 (494)
T KOG1456|consen 356 NVCVSK 361 (494)
T ss_pred EEeecc
Confidence 666543
No 89
>smart00360 RRM RNA recognition motif.
Probab=99.32 E-value=6.8e-12 Score=89.70 Aligned_cols=65 Identities=37% Similarity=0.665 Sum_probs=59.5
Q ss_pred EcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCC
Q 015716 19 VGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (402)
Q Consensus 19 V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g 84 (402)
|+|||..+++++|+++|++||.|.++.+..++.++.++|+|||+|.+.++|.+|++.+++.. +.+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~-~~~ 65 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKE-LDG 65 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCe-eCC
Confidence 68999999999999999999999999999988788999999999999999999999997555 444
No 90
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=5.7e-12 Score=102.00 Aligned_cols=76 Identities=26% Similarity=0.516 Sum_probs=66.3
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEEc
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~a 181 (402)
.++|||+||+..+++.||..+|..||.+.+|.|-+.+ .|||||+|++..+|..|+..|+|+. +.|. .|.|+.+
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP----PGfAFVEFed~RDA~DAvr~LDG~~-~cG~--r~rVE~S 82 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP----PGFAFVEFEDPRDAEDAVRYLDGKD-ICGS--RIRVELS 82 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC----CCceEEeccCcccHHHHHhhcCCcc-ccCc--eEEEEee
Confidence 6789999999999999999999999999999887753 6899999999999999999999998 5554 4677665
Q ss_pred CCH
Q 015716 182 DTE 184 (402)
Q Consensus 182 ~~~ 184 (402)
.-.
T Consensus 83 ~G~ 85 (195)
T KOG0107|consen 83 TGR 85 (195)
T ss_pred cCC
Confidence 543
No 91
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.30 E-value=8.2e-12 Score=91.98 Aligned_cols=83 Identities=20% Similarity=0.360 Sum_probs=68.9
Q ss_pred cccCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCC
Q 015716 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (402)
Q Consensus 7 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~ 86 (402)
.+-.++..+-|||+|||+.+|.++..++|.+||.|..|+|=.++. .+|.|||.|++..+|++|++.|.+.. +.+
T Consensus 11 ~rlppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n-~~~-- 84 (124)
T KOG0114|consen 11 IRLPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYN-VDN-- 84 (124)
T ss_pred CCCChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccc-cCC--
Confidence 344566788899999999999999999999999999999866554 67999999999999999999997766 444
Q ss_pred CCccccccC
Q 015716 87 SPLQVKYAD 95 (402)
Q Consensus 87 ~~~~~~~~~ 95 (402)
+.+.+-+-.
T Consensus 85 ryl~vlyyq 93 (124)
T KOG0114|consen 85 RYLVVLYYQ 93 (124)
T ss_pred ceEEEEecC
Confidence 555555443
No 92
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.28 E-value=7.1e-12 Score=119.29 Aligned_cols=81 Identities=26% Similarity=0.468 Sum_probs=75.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCcccccc
Q 015716 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYA 94 (402)
Q Consensus 15 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~~~~~ 94 (402)
+.|||||||++++|++|.++|++.|.|.+++++.|+.||+.+||||++|.+.++|++|++.||+.. +.| +++++.|+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~-~~g--r~l~v~~~ 95 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAE-FNG--RKLRVNYA 95 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcc-cCC--ceEEeecc
Confidence 899999999999999999999999999999999999999999999999999999999999998777 666 88888887
Q ss_pred Cccc
Q 015716 95 DGEL 98 (402)
Q Consensus 95 ~~~~ 98 (402)
....
T Consensus 96 ~~~~ 99 (435)
T KOG0108|consen 96 SNRK 99 (435)
T ss_pred cccc
Confidence 5433
No 93
>smart00362 RRM_2 RNA recognition motif.
Probab=99.27 E-value=2e-11 Score=87.56 Aligned_cols=67 Identities=40% Similarity=0.767 Sum_probs=61.5
Q ss_pred eEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCC
Q 015716 104 KLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGS 172 (402)
Q Consensus 104 ~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~ 172 (402)
+|||+|||..+++++|+++|++||.|..+.+.++. +.++++|||+|.+.++|++|++.+++.. +.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~-~~~~ 67 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTK-LGGR 67 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcE-ECCE
Confidence 58999999999999999999999999999999876 7788999999999999999999999876 5554
No 94
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.27 E-value=4.8e-12 Score=104.97 Aligned_cols=77 Identities=30% Similarity=0.509 Sum_probs=70.1
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEE
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~ 180 (402)
-..|-|-||-+.++.++|+.+|++||.|.+|.|++|. +..++|||||.|.+..+|+.|++.|+|.. ++|+. |.|..
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~-ldgRe--lrVq~ 89 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAV-LDGRE--LRVQM 89 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhccee-eccce--eeehh
Confidence 3579999999999999999999999999999999998 89999999999999999999999999987 88875 55544
Q ss_pred c
Q 015716 181 A 181 (402)
Q Consensus 181 a 181 (402)
|
T Consensus 90 a 90 (256)
T KOG4207|consen 90 A 90 (256)
T ss_pred h
Confidence 4
No 95
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.26 E-value=1.6e-12 Score=108.69 Aligned_cols=141 Identities=21% Similarity=0.273 Sum_probs=119.2
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCC
Q 015716 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (402)
Q Consensus 9 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~ 88 (402)
...+..++|||.|+...++|+-|.++|-+-|+|..|.|..+++ ++.+ ||||.|+++.++.-|++.+|+.+ +.+ .+
T Consensus 4 aaae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~-l~~--~e 78 (267)
T KOG4454|consen 4 AAAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDD-LEE--DE 78 (267)
T ss_pred CCcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccch-hcc--ch
Confidence 3456789999999999999999999999999999999988876 5555 99999999999999999997766 443 33
Q ss_pred ccccccCcccccccceEEEcC----CCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHc
Q 015716 89 LQVKYADGELERLEHKLFIGM----LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAIN 164 (402)
Q Consensus 89 ~~~~~~~~~~~~~~~~l~v~n----lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 164 (402)
+. .++++++ |...++++.+.+.|+..|.+..+++.++.+|+.+.++|+.+-.....-.++....
T Consensus 79 ~q------------~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~ 146 (267)
T KOG4454|consen 79 EQ------------RTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQ 146 (267)
T ss_pred hh------------cccccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhc
Confidence 33 4567777 7788999999999999999999999999999999999999877777667766555
Q ss_pred CC
Q 015716 165 GK 166 (402)
Q Consensus 165 g~ 166 (402)
+.
T Consensus 147 ~l 148 (267)
T KOG4454|consen 147 GL 148 (267)
T ss_pred cc
Confidence 43
No 96
>PLN03213 repressor of silencing 3; Provisional
Probab=99.25 E-value=4.4e-11 Score=111.32 Aligned_cols=79 Identities=19% Similarity=0.347 Sum_probs=69.7
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCH--HHHHHHHHHHcCCcccCCCceeEEEE
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETK--EQALAALEAINGKHKMEGSSVPLVVK 179 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~--~~A~~A~~~l~g~~~~~g~~~~l~v~ 179 (402)
..+|||+||++++++++|+.+|+.||.|.+|.|++. +| ||||||+|.+. .++.+||..|||.. +.|+ .|+|.
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE-TG--RGFAFVEMssdddaEeeKAISaLNGAE-WKGR--~LKVN 83 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT-KG--RSFAYIDFSPSSTNSLTKLFSTYNGCV-WKGG--RLRLE 83 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc-cC--CceEEEEecCCcHHHHHHHHHHhcCCe-ecCc--eeEEe
Confidence 568999999999999999999999999999999954 45 99999999987 78999999999998 5555 48999
Q ss_pred EcCCHHH
Q 015716 180 WADTEKE 186 (402)
Q Consensus 180 ~a~~~~~ 186 (402)
.|++.-.
T Consensus 84 KAKP~YL 90 (759)
T PLN03213 84 KAKEHYL 90 (759)
T ss_pred eccHHHH
Confidence 9987643
No 97
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.24 E-value=1.2e-11 Score=95.51 Aligned_cols=84 Identities=21% Similarity=0.342 Sum_probs=74.3
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 015716 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (402)
Q Consensus 8 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~ 87 (402)
..+..+.-.|||.++...++|++|.+.|..||+|.++.+-.|+.||-.+|||+|+|++.++|++||..+|+..+ -+ .
T Consensus 66 PqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~l-l~--q 142 (170)
T KOG0130|consen 66 PQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAEL-LG--Q 142 (170)
T ss_pred CccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhh-hC--C
Confidence 34455667899999999999999999999999999999999999999999999999999999999999987774 44 6
Q ss_pred Ccccccc
Q 015716 88 PLQVKYA 94 (402)
Q Consensus 88 ~~~~~~~ 94 (402)
.+.|.|.
T Consensus 143 ~v~VDw~ 149 (170)
T KOG0130|consen 143 NVSVDWC 149 (170)
T ss_pred ceeEEEE
Confidence 7777764
No 98
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.24 E-value=9.4e-10 Score=99.51 Aligned_cols=167 Identities=20% Similarity=0.240 Sum_probs=117.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHh---c-CCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhc----------
Q 015716 12 EERVKLFVGQVPKHMTEAQLLAMFKE---F-ALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACH---------- 77 (402)
Q Consensus 12 ~~~~~l~V~nLp~~~t~~~L~~~f~~---~-G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~---------- 77 (402)
.....|-+++||+++++.|+.++|.. . |-.+.|..+...+ |+..|-|||.|..+++|+.|+.+-.
T Consensus 159 ~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpd-grpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIEl 237 (508)
T KOG1365|consen 159 ENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPD-GRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIEL 237 (508)
T ss_pred ccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCC-CCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHH
Confidence 34566788999999999999999963 2 3456676666654 8899999999999999999986521
Q ss_pred -------------CCC---CCCCCCCCccc--cccCcccccccceEEEcCCCCCCcHHHHHHhhccCCC-eeE--EEEee
Q 015716 78 -------------NKK---TLPGASSPLQV--KYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGT-IKD--LQILR 136 (402)
Q Consensus 78 -------------~~~---~~~g~~~~~~~--~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~-v~~--~~i~~ 136 (402)
+.. ++.+...++.- -.......+...+|-+++||++.+.|+|.++|..|.. |.. |.+..
T Consensus 238 FRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~ 317 (508)
T KOG1365|consen 238 FRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVL 317 (508)
T ss_pred HHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEE
Confidence 000 11111111100 0000111223668999999999999999999999874 333 77777
Q ss_pred CCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEEcC
Q 015716 137 GSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWAD 182 (402)
Q Consensus 137 ~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~a~ 182 (402)
+..|+..|-|||+|.+.|+|.+|..+.+.+. . +.+-|.|--+.
T Consensus 318 N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~-m--k~RYiEvfp~S 360 (508)
T KOG1365|consen 318 NGQGRPSGEAFIQMRNAERARAAAQKCHKKL-M--KSRYIEVFPCS 360 (508)
T ss_pred cCCCCcChhhhhhhhhhHHHHHHHHHHHHhh-c--ccceEEEeecc
Confidence 8889999999999999999999998888765 3 33345554443
No 99
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.24 E-value=5.1e-11 Score=85.92 Aligned_cols=72 Identities=42% Similarity=0.723 Sum_probs=62.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCccc
Q 015716 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 91 (402)
Q Consensus 16 ~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~~ 91 (402)
+|+|+|||..+++++|+++|+.||.|..+.+..+..+ +.+|+|||+|.+.++|..|++.+++.. +.+ +.+.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~-~~~--~~~~v 72 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKE-LGG--RPLRV 72 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCe-ECC--eEEEE
Confidence 5899999999999999999999999999999988764 778999999999999999999997655 444 44443
No 100
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.24 E-value=1.2e-12 Score=106.28 Aligned_cols=77 Identities=32% Similarity=0.629 Sum_probs=70.4
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEE
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~ 180 (402)
+.-|||+|||+++||.||-.+|++||+|..|.+++|. +|+|+||||+.|++..+..-|+..|||.. +.|+. |+|..
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGik-i~gRt--irVDH 111 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIK-ILGRT--IRVDH 111 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCce-eccee--EEeee
Confidence 5689999999999999999999999999999999998 89999999999999999999999999988 56664 66655
Q ss_pred c
Q 015716 181 A 181 (402)
Q Consensus 181 a 181 (402)
.
T Consensus 112 v 112 (219)
T KOG0126|consen 112 V 112 (219)
T ss_pred c
Confidence 4
No 101
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=5.5e-12 Score=105.50 Aligned_cols=83 Identities=33% Similarity=0.516 Sum_probs=75.7
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEE
Q 015716 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (402)
Q Consensus 101 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~ 179 (402)
.+++|||++|..++++..|...|-+||.|..|.++.|. +++.||||||+|...|+|.+|+..||+.. +-|+ .|+|.
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesE-L~Gr--tirVN 85 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESE-LFGR--TIRVN 85 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhh-hcce--eEEEe
Confidence 46899999999999999999999999999999999987 78999999999999999999999999999 5554 58999
Q ss_pred EcCCHHH
Q 015716 180 WADTEKE 186 (402)
Q Consensus 180 ~a~~~~~ 186 (402)
+|.+.+-
T Consensus 86 ~AkP~ki 92 (298)
T KOG0111|consen 86 LAKPEKI 92 (298)
T ss_pred ecCCccc
Confidence 9987653
No 102
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.23 E-value=3.7e-11 Score=103.91 Aligned_cols=75 Identities=16% Similarity=0.236 Sum_probs=64.8
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEEc
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~a 181 (402)
..+|||+||++.+|+++|+++|+.||+|.+|+|+++ +..+++|||+|.+.++|..|+ .|+|..+ .++ .|.|...
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D--~et~gfAfVtF~d~~aaetAl-lLnGa~l-~d~--~I~It~~ 78 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS--GEYACTAYVTFKDAYALETAV-LLSGATI-VDQ--RVCITRW 78 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC--CCcceEEEEEECCHHHHHHHH-hcCCCee-CCc--eEEEEeC
Confidence 468999999999999999999999999999999988 455689999999999999999 5999884 444 3666554
Q ss_pred C
Q 015716 182 D 182 (402)
Q Consensus 182 ~ 182 (402)
.
T Consensus 79 ~ 79 (243)
T PLN03121 79 G 79 (243)
T ss_pred c
Confidence 3
No 103
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.23 E-value=2.2e-11 Score=94.13 Aligned_cols=81 Identities=26% Similarity=0.464 Sum_probs=72.3
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEE
Q 015716 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (402)
Q Consensus 101 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~ 179 (402)
..-.|||.++-...++++|.+.|..||+|+.+.+-.|. +|-.+|||+|+|++.++|++|++.+||..+++.. |.|.
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~---v~VD 147 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQN---VSVD 147 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCc---eeEE
Confidence 35689999999999999999999999999999998876 8999999999999999999999999999965543 7788
Q ss_pred EcCCH
Q 015716 180 WADTE 184 (402)
Q Consensus 180 ~a~~~ 184 (402)
|+-.+
T Consensus 148 w~Fv~ 152 (170)
T KOG0130|consen 148 WCFVK 152 (170)
T ss_pred EEEec
Confidence 87544
No 104
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=1.7e-10 Score=108.61 Aligned_cols=156 Identities=22% Similarity=0.397 Sum_probs=114.2
Q ss_pred ccccCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC---CCCccc---EEEEEeCCHHHHHHHHHHhcCC
Q 015716 6 KEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKT---TRASRG---CCFVICPSRQEADKAVNACHNK 79 (402)
Q Consensus 6 ~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~---t~~~~g---~afV~F~~~~~a~~ai~~l~~~ 79 (402)
+..+...-+++|||++||++++|++|...|..||.+. |....... --..+| |+|+.|+++.+++.-+..+...
T Consensus 251 ~~~~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~ 329 (520)
T KOG0129|consen 251 RGYRSPRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEG 329 (520)
T ss_pred CCCCccccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhc
Confidence 4445566789999999999999999999999999853 55542111 114566 9999999999999888765321
Q ss_pred ---CCCCCCCCCc-----cc---cccC-------cccccccceEEEcCCCCCCcHHHHHHhhc-cCCCeeEEEEeeCC-C
Q 015716 80 ---KTLPGASSPL-----QV---KYAD-------GELERLEHKLFIGMLPKNVSEAEVSALFS-IYGTIKDLQILRGS-Q 139 (402)
Q Consensus 80 ---~~~~g~~~~~-----~~---~~~~-------~~~~~~~~~l~v~nlp~~~t~~~l~~~f~-~~G~v~~~~i~~~~-~ 139 (402)
..+.-....+ ++ ..++ ...-...+||||++||--++.++|..+|+ -||.|..+-|-.|+ -
T Consensus 330 ~~~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~ 409 (520)
T KOG0129|consen 330 EGNYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKL 409 (520)
T ss_pred ccceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCccc
Confidence 0010000111 11 1111 11223378999999999999999999998 69999999998885 5
Q ss_pred CCcceEEEEEeCCHHHHHHHHHH
Q 015716 140 QTSKGCAFLKYETKEQALAALEA 162 (402)
Q Consensus 140 ~~~~g~afV~f~~~~~A~~A~~~ 162 (402)
+-.+|-|-|+|.+..+-.+||++
T Consensus 410 KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 410 KYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CCCCCcceeeecccHHHHHHHhh
Confidence 66789999999999999999863
No 105
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.22 E-value=4.5e-11 Score=113.91 Aligned_cols=87 Identities=25% Similarity=0.465 Sum_probs=78.9
Q ss_pred ceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEEc
Q 015716 103 HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181 (402)
Q Consensus 103 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~a 181 (402)
+.+||+|||+++++++|.++|+..|.|.++++..|+ +|+.+||||++|.+.++|.+|++.|||.. +.|+ +|+|.|+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~-~~gr--~l~v~~~ 95 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAE-FNGR--KLRVNYA 95 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcc-cCCc--eEEeecc
Confidence 789999999999999999999999999999999998 89999999999999999999999999988 6665 6999999
Q ss_pred CCHHHHHHHHH
Q 015716 182 DTEKERQARRA 192 (402)
Q Consensus 182 ~~~~~~~~~~~ 192 (402)
...+.+.....
T Consensus 96 ~~~~~~~~~~~ 106 (435)
T KOG0108|consen 96 SNRKNAERSLA 106 (435)
T ss_pred cccchhHHHHh
Confidence 87766655443
No 106
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.21 E-value=1.4e-12 Score=128.71 Aligned_cols=151 Identities=24% Similarity=0.203 Sum_probs=108.8
Q ss_pred CCCCCeEEEcCCCCCCCHH-HHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCc
Q 015716 11 SEERVKLFVGQVPKHMTEA-QLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (402)
Q Consensus 11 ~~~~~~l~V~nLp~~~t~~-~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~ 89 (402)
........+.++.+...+. ..+..|..+|.|+.|++..........-++++.+....+++.|...- ++. +.+ +..
T Consensus 568 ~~~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~pa-~~~-~a~--~~~ 643 (881)
T KOG0128|consen 568 PLERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATVPA-GGA-LAN--RSA 643 (881)
T ss_pred hhhhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccccc-ccc-cCC--ccc
Confidence 3455667777886666665 56778889999999998763321222238899999999999887653 222 333 334
Q ss_pred cccccCcccc-----------cccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEe-eCCCCCcceEEEEEeCCHHHHH
Q 015716 90 QVKYADGELE-----------RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL-RGSQQTSKGCAFLKYETKEQAL 157 (402)
Q Consensus 90 ~~~~~~~~~~-----------~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~-~~~~~~~~g~afV~f~~~~~A~ 157 (402)
.+..++++.. +..+++||.||+..+.+++|...|..+|.+..+.+. ....++-+|+|+|.|...+++.
T Consensus 644 av~~ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~ 723 (881)
T KOG0128|consen 644 AVGLADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAG 723 (881)
T ss_pred cCCCCCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchh
Confidence 4444433322 224578999999999999999999999988877665 3346778999999999999999
Q ss_pred HHHHHHcC
Q 015716 158 AALEAING 165 (402)
Q Consensus 158 ~A~~~l~g 165 (402)
+|+....+
T Consensus 724 aaV~f~d~ 731 (881)
T KOG0128|consen 724 AAVAFRDS 731 (881)
T ss_pred hhhhhhhh
Confidence 99974443
No 107
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=7e-12 Score=104.89 Aligned_cols=86 Identities=26% Similarity=0.407 Sum_probs=78.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCccc
Q 015716 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 91 (402)
Q Consensus 12 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~~ 91 (402)
...++|||++|..+++|.-|...|-.||.|.+|.+..|-.++++||||||+|...|+|..||..||... +.| +.|+|
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesE-L~G--rtirV 84 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESE-LFG--RTIRV 84 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhh-hcc--eeEEE
Confidence 356899999999999999999999999999999999999999999999999999999999999998777 677 89999
Q ss_pred cccCccccc
Q 015716 92 KYADGELER 100 (402)
Q Consensus 92 ~~~~~~~~~ 100 (402)
.++.+..-.
T Consensus 85 N~AkP~kik 93 (298)
T KOG0111|consen 85 NLAKPEKIK 93 (298)
T ss_pred eecCCcccc
Confidence 998876543
No 108
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.19 E-value=3.4e-11 Score=103.18 Aligned_cols=71 Identities=32% Similarity=0.591 Sum_probs=62.0
Q ss_pred ceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEEcC
Q 015716 103 HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWAD 182 (402)
Q Consensus 103 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~a~ 182 (402)
..+||++||+.+.+.+|..+|..||++..+.+. .||+||+|.+..+|..|+..+|++. +.+.. +.|.|+.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-------~gf~fv~fed~rda~Dav~~l~~~~-l~~e~--~vve~~r 71 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK-------NGFGFVEFEDPRDADDAVHDLDGKE-LCGER--LVVEHAR 71 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee-------cccceeccCchhhhhcccchhcCce-eccee--eeeeccc
Confidence 368999999999999999999999999999886 4689999999999999999999987 55543 7777765
Q ss_pred C
Q 015716 183 T 183 (402)
Q Consensus 183 ~ 183 (402)
.
T Consensus 72 ~ 72 (216)
T KOG0106|consen 72 G 72 (216)
T ss_pred c
Confidence 4
No 109
>smart00360 RRM RNA recognition motif.
Probab=99.17 E-value=1.2e-10 Score=83.12 Aligned_cols=66 Identities=42% Similarity=0.783 Sum_probs=59.7
Q ss_pred EcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCc
Q 015716 107 IGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSS 173 (402)
Q Consensus 107 v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~ 173 (402)
|+|||..+++++|+++|+.||.|..+.+..++ ++.++|+|||+|.+.++|.+|++.+++.. ++|+.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~-~~~~~ 67 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKE-LDGRP 67 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCe-eCCcE
Confidence 57999999999999999999999999998876 58889999999999999999999999876 56653
No 110
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.17 E-value=3.1e-11 Score=103.44 Aligned_cols=156 Identities=18% Similarity=0.343 Sum_probs=117.7
Q ss_pred CCCeEEEcCCCCCCCHHH-H--HHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCc
Q 015716 13 ERVKLFVGQVPKHMTEAQ-L--LAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (402)
Q Consensus 13 ~~~~l~V~nLp~~~t~~~-L--~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~ 89 (402)
.....+++++-..+..+- | -..|+.+-.....+++++.. +.-++++|+.|.....-.++-..-+++++ ...++
T Consensus 95 ~vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p-~~~~~~~~~~~k~s~a~~k~~~~~~~Kki---~~~~V 170 (290)
T KOG0226|consen 95 AVFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRP-QPIRPEAFESFKASDALLKAETEKEKKKI---GKPPV 170 (290)
T ss_pred ccccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCC-CccCcccccCcchhhhhhhhccccccccc---cCcce
Confidence 445566666655555544 3 66788888888888888874 78889999999887777777655434332 12323
Q ss_pred cccc----cCc---ccccccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHH
Q 015716 90 QVKY----ADG---ELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALE 161 (402)
Q Consensus 90 ~~~~----~~~---~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~ 161 (402)
+... .++ +....+.+||++.|..+++++.|-..|.+|-.....++++|. +|+++||+||.|.+.+++..|++
T Consensus 171 R~a~gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmr 250 (290)
T KOG0226|consen 171 RLAAGTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMR 250 (290)
T ss_pred eeccccccCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHH
Confidence 3322 222 223347799999999999999999999999988888999987 89999999999999999999999
Q ss_pred HHcCCcccCCCc
Q 015716 162 AINGKHKMEGSS 173 (402)
Q Consensus 162 ~l~g~~~~~g~~ 173 (402)
+|+|+. ++.+-
T Consensus 251 em~gky-Vgsrp 261 (290)
T KOG0226|consen 251 EMNGKY-VGSRP 261 (290)
T ss_pred hhcccc-cccch
Confidence 999987 56553
No 111
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.16 E-value=2.6e-10 Score=82.10 Aligned_cols=73 Identities=44% Similarity=0.805 Sum_probs=65.1
Q ss_pred eEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEE
Q 015716 104 KLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (402)
Q Consensus 104 ~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~ 179 (402)
+|+|++||..+++++|+++|+.+|.|..+.+..+..+..+++|||+|.+.++|..|++.+++.. ++|+ .+.|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~-~~~~--~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKE-LGGR--PLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCe-ECCe--EEEEe
Confidence 4899999999999999999999999999999988766778999999999999999999999987 5655 35554
No 112
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.15 E-value=5.9e-09 Score=102.42 Aligned_cols=74 Identities=32% Similarity=0.612 Sum_probs=64.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCcccc
Q 015716 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVK 92 (402)
Q Consensus 13 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~~~ 92 (402)
-++||||++|+.+++|.||.++|++||+|.+|.++. ++|||||.+....+|.+|+.+|++.+ +.. +.|++.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~k-v~~--k~Iki~ 490 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVK-VAD--KTIKIA 490 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhccc-ccc--eeeEEe
Confidence 468999999999999999999999999999999865 45799999999999999999998766 433 677777
Q ss_pred ccC
Q 015716 93 YAD 95 (402)
Q Consensus 93 ~~~ 95 (402)
|+.
T Consensus 491 Wa~ 493 (894)
T KOG0132|consen 491 WAV 493 (894)
T ss_pred eec
Confidence 764
No 113
>smart00361 RRM_1 RNA recognition motif.
Probab=99.14 E-value=1.2e-10 Score=83.39 Aligned_cols=56 Identities=20% Similarity=0.372 Sum_probs=49.6
Q ss_pred HHHHHHHHH----hcCCeeEEE-EeeCCCC--CCcccEEEEEeCCHHHHHHHHHHhcCCCCCCC
Q 015716 28 EAQLLAMFK----EFALVDEVN-IIKDKTT--RASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (402)
Q Consensus 28 ~~~L~~~f~----~~G~v~~v~-~~~~~~t--~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g 84 (402)
+++|+++|+ +||.|.+|. ++.++.+ +.++|||||+|.+.++|.+|++.||+.. +.|
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~-~~g 64 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRY-FDG 64 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCE-ECC
Confidence 678999998 999999996 7787766 8999999999999999999999998765 555
No 114
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.13 E-value=4.8e-11 Score=118.63 Aligned_cols=170 Identities=19% Similarity=0.253 Sum_probs=140.5
Q ss_pred cccCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCC
Q 015716 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (402)
Q Consensus 7 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~ 86 (402)
+..+.....+||++||+..+++.+|+..|..+|.|.+|.|...+- +.-.-|+||.|.+...+-+|.-.+.+..+..|
T Consensus 365 ~~DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g-- 441 (975)
T KOG0112|consen 365 KLDDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNG-- 441 (975)
T ss_pred cccchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCccccC--
Confidence 445677889999999999999999999999999999999877643 44455999999999999999888866655444
Q ss_pred CCccccccCcccccccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCC
Q 015716 87 SPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 166 (402)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 166 (402)
.+++.+..+ .....+.+|+++|...+....|...|..||.|..|.+-.. ..|++|.|++...|+.|++.|.|.
T Consensus 442 -~~r~glG~~-kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg-----q~yayi~yes~~~aq~a~~~~rga 514 (975)
T KOG0112|consen 442 -THRIGLGQP-KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG-----QPYAYIQYESPPAAQAATHDMRGA 514 (975)
T ss_pred -ccccccccc-ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC-----CcceeeecccCccchhhHHHHhcC
Confidence 333333333 3334678999999999999999999999999999888654 569999999999999999999998
Q ss_pred cccCCCceeEEEEEcCCHHHH
Q 015716 167 HKMEGSSVPLVVKWADTEKER 187 (402)
Q Consensus 167 ~~~~g~~~~l~v~~a~~~~~~ 187 (402)
. +++..+.++|.++......
T Consensus 515 p-~G~P~~r~rvdla~~~~~~ 534 (975)
T KOG0112|consen 515 P-LGGPPRRLRVDLASPPGAT 534 (975)
T ss_pred c-CCCCCcccccccccCCCCC
Confidence 8 7888888999999876543
No 115
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.10 E-value=1.8e-11 Score=102.51 Aligned_cols=66 Identities=24% Similarity=0.325 Sum_probs=62.5
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcc
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 168 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 168 (402)
.++|||+|+...++++.|.++|.+.|.|..+.|..++++..+ ||||.|.++.+..-|++.+||..+
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l 74 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDL 74 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchh
Confidence 579999999999999999999999999999999999988877 999999999999999999999773
No 116
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.09 E-value=2.4e-09 Score=101.83 Aligned_cols=161 Identities=17% Similarity=0.233 Sum_probs=104.3
Q ss_pred cccccCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCC
Q 015716 5 KKEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (402)
Q Consensus 5 ~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g 84 (402)
+....++-...+|+|-|||..+++++|+.+|+.||+|.+|+. |...+|.+||+|.|..+|++|++.|+... +.|
T Consensus 66 ~np~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~-~~~ 139 (549)
T KOG4660|consen 66 DNPSEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRRE-IAG 139 (549)
T ss_pred CCCCcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHH-hhh
Confidence 344555677899999999999999999999999999999664 45567899999999999999999997665 333
Q ss_pred CCCCccccccCcc----------------------c-ccccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCC
Q 015716 85 ASSPLQVKYADGE----------------------L-ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQT 141 (402)
Q Consensus 85 ~~~~~~~~~~~~~----------------------~-~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~ 141 (402)
+.+........ . ......+|+- |++..+...++..++-+|.+.. +-. +.
T Consensus 140 --~~~k~~~~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g~-l~P~~s~~~~~~~~~~~~~~~~-~~~----~~ 211 (549)
T KOG4660|consen 140 --KRIKRPGGARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFGM-LSPTRSSILLEHISSVDGSSPG-RET----PL 211 (549)
T ss_pred --hhhcCCCcccccchhcccchhhhhccchhhcCCCCCCcCCcceee-eccchhhhhhhcchhccCcccc-ccc----cc
Confidence 22220000000 0 0001234433 8888888777777788887665 221 11
Q ss_pred cceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEEcCC
Q 015716 142 SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADT 183 (402)
Q Consensus 142 ~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~a~~ 183 (402)
-...-|+.|.+..++..+.. .|-.++.+.. ..+.+...
T Consensus 212 ~~hq~~~~~~~~~s~a~~~~--~~G~~~s~~~--~v~t~S~~ 249 (549)
T KOG4660|consen 212 LNHQRFVEFADNRSYAFSEP--RGGFLISNSS--GVITFSGP 249 (549)
T ss_pred hhhhhhhhhccccchhhccc--CCceecCCCC--ceEEecCC
Confidence 12256788888887755554 3323344443 34444443
No 117
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.08 E-value=4.6e-10 Score=76.64 Aligned_cols=56 Identities=36% Similarity=0.751 Sum_probs=48.5
Q ss_pred HHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEEc
Q 015716 119 VSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181 (402)
Q Consensus 119 l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~a 181 (402)
|+++|++||+|.++.+.++. +++|||+|.+.++|++|++.|||.. +.|+ +|.|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~-~~g~--~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQ-FNGR--PLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSE-ETTE--EEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCE-ECCc--EEEEEEC
Confidence 68999999999999998763 5899999999999999999999988 6665 5888875
No 118
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.07 E-value=3.2e-10 Score=94.63 Aligned_cols=76 Identities=26% Similarity=0.396 Sum_probs=67.5
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHHhc-CCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCC
Q 015716 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEF-ALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (402)
Q Consensus 8 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~-G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g 84 (402)
........-++|..+|..+.+.+|..+|.++ |.|..+++-+++.||.|+|||||+|++++.|.-|-+.|||.- +.+
T Consensus 43 ~p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYL-l~e 119 (214)
T KOG4208|consen 43 KPEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYL-LME 119 (214)
T ss_pred CCccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhh-hhh
Confidence 3445566779999999999999999999999 789999999999999999999999999999999999998765 444
No 119
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.06 E-value=7.2e-12 Score=123.85 Aligned_cols=150 Identities=21% Similarity=0.273 Sum_probs=125.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCccc
Q 015716 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 91 (402)
Q Consensus 12 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~~ 91 (402)
++.+++||+||+..+.+.+|...|..+|.+..+++..-+.+++.+|+|||+|..++++.+||... .+. +.|
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~-d~~-~~g------- 735 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFR-DSC-FFG------- 735 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhh-hhh-hhh-------
Confidence 45678999999999999999999999999888887766667899999999999999999999864 222 223
Q ss_pred cccCcccccccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCC
Q 015716 92 KYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEG 171 (402)
Q Consensus 92 ~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g 171 (402)
+..++|.|.|+..|.++|+.+++++|.+.+.+++....|+.+|.++|.|.+..+|.+++....+..+
T Consensus 736 ----------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~--- 802 (881)
T KOG0128|consen 736 ----------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGK--- 802 (881)
T ss_pred ----------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhh---
Confidence 3569999999999999999999999999999999888999999999999999999999877766442
Q ss_pred CceeEEEEEcCC
Q 015716 172 SSVPLVVKWADT 183 (402)
Q Consensus 172 ~~~~l~v~~a~~ 183 (402)
+...+.|..+++
T Consensus 803 rE~~~~v~vsnp 814 (881)
T KOG0128|consen 803 RENNGEVQVSNP 814 (881)
T ss_pred hhcCccccccCC
Confidence 223344544444
No 120
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.05 E-value=1e-07 Score=92.72 Aligned_cols=164 Identities=11% Similarity=0.037 Sum_probs=118.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCcc
Q 015716 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (402)
Q Consensus 11 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~ 90 (402)
..+.+.+-+++.+.++++.|++++|..- .|..+.|..+...+...|-++|+|....++++|++. +...... +.+.
T Consensus 308 v~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r--n~~~~~~--R~~q 382 (944)
T KOG4307|consen 308 VSDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR--NPSDDVN--RPFQ 382 (944)
T ss_pred cchhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhc--Cchhhhh--ccee
Confidence 4567788899999999999999998632 355666767766555578999999999999999876 2222211 2222
Q ss_pred ccccCc----------------------------------------ccccccceEEEcCCCCCCcHHHHHHhhccCCCee
Q 015716 91 VKYADG----------------------------------------ELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIK 130 (402)
Q Consensus 91 ~~~~~~----------------------------------------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~ 130 (402)
+..... -.......|||..||..+++.++.++|...-.|+
T Consensus 383 ~~P~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ve 462 (944)
T KOG4307|consen 383 TGPPGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVE 462 (944)
T ss_pred ecCCCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhh
Confidence 221100 0000155899999999999999999999988888
Q ss_pred E-EEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEEcC
Q 015716 131 D-LQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWAD 182 (402)
Q Consensus 131 ~-~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~a~ 182 (402)
+ |.|.+.++++-++.|||.|..++++..|...-+. ++++. +.|+|.-..
T Consensus 463 d~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k-~y~G~--r~irv~si~ 512 (944)
T KOG4307|consen 463 DFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTK-FYPGH--RIIRVDSIA 512 (944)
T ss_pred heeEeccCCcccccchhhheeccccccchhhhcccc-cccCc--eEEEeechh
Confidence 7 7888888899999999999999998888764443 33443 346776543
No 121
>smart00361 RRM_1 RNA recognition motif.
Probab=99.02 E-value=1e-09 Score=78.64 Aligned_cols=57 Identities=21% Similarity=0.520 Sum_probs=48.5
Q ss_pred HHHHHHhhc----cCCCeeEEE-EeeCC-C--CCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCc
Q 015716 116 EAEVSALFS----IYGTIKDLQ-ILRGS-Q--QTSKGCAFLKYETKEQALAALEAINGKHKMEGSS 173 (402)
Q Consensus 116 ~~~l~~~f~----~~G~v~~~~-i~~~~-~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~ 173 (402)
+++|+++|+ +||.|.++. +..++ + +.++|||||+|.+.++|.+|++.|||.. ++|+.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~-~~gr~ 66 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRY-FDGRT 66 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCE-ECCEE
Confidence 577888888 999999995 55443 4 8899999999999999999999999987 67763
No 122
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.00 E-value=6.4e-10 Score=75.95 Aligned_cols=55 Identities=36% Similarity=0.679 Sum_probs=46.2
Q ss_pred HHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCccccc
Q 015716 31 LLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKY 93 (402)
Q Consensus 31 L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~~~~ 93 (402)
|+++|++||+|.++.+..++ +++|||+|.+.++|++|++.||+.. +.| +.|.+.+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~-~~g--~~l~V~~ 55 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQ-FNG--RPLKVSY 55 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSE-ETT--EEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCE-ECC--cEEEEEE
Confidence 68999999999999997765 5799999999999999999997766 666 6677665
No 123
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=1.2e-09 Score=97.83 Aligned_cols=84 Identities=18% Similarity=0.307 Sum_probs=74.2
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCC
Q 015716 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (402)
Q Consensus 9 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~ 88 (402)
.-.++...|||-.|-+-++++||.-+|+.||+|.+|.|++|+.||.+.-||||+|++.+++++|.-+|.|-. +.. +.
T Consensus 234 d~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvL-IDD--rR 310 (479)
T KOG0415|consen 234 DVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVL-IDD--RR 310 (479)
T ss_pred ccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhccee-ecc--ce
Confidence 345678899999999999999999999999999999999999999999999999999999999999996644 554 67
Q ss_pred ccccccC
Q 015716 89 LQVKYAD 95 (402)
Q Consensus 89 ~~~~~~~ 95 (402)
|.|.++.
T Consensus 311 IHVDFSQ 317 (479)
T KOG0415|consen 311 IHVDFSQ 317 (479)
T ss_pred EEeehhh
Confidence 7766654
No 124
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.91 E-value=1.6e-09 Score=98.72 Aligned_cols=169 Identities=17% Similarity=0.264 Sum_probs=130.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCccc
Q 015716 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 91 (402)
Q Consensus 12 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~~ 91 (402)
...+++|++++..++.+.++..++.++|.+..+.+........++|++.+.|...+.+..|+... ....+.+......+
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s-~~~~~~~~~~~~dl 164 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEES-GSKVLDGNKGEKDL 164 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhh-hccccccccccCcc
Confidence 46789999999999999999999999999888888887777899999999999999999999875 22223221111111
Q ss_pred cccCc---------ccccccceEE-EcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHH
Q 015716 92 KYADG---------ELERLEHKLF-IGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAAL 160 (402)
Q Consensus 92 ~~~~~---------~~~~~~~~l~-v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~ 160 (402)
..... .......++| ++++++.+++++|+..|..+|.|..+++..++ ++.++||++|.|.+...+..++
T Consensus 165 ~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~ 244 (285)
T KOG4210|consen 165 NTRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLAL 244 (285)
T ss_pred cccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHh
Confidence 11111 1111244555 99999999999999999999999999998876 7899999999999999999998
Q ss_pred HHHcCCcccCCCceeEEEEEcCCHH
Q 015716 161 EAINGKHKMEGSSVPLVVKWADTEK 185 (402)
Q Consensus 161 ~~l~g~~~~~g~~~~l~v~~a~~~~ 185 (402)
.. .... +.+. .+.+.+.....
T Consensus 245 ~~-~~~~-~~~~--~~~~~~~~~~~ 265 (285)
T KOG4210|consen 245 ND-QTRS-IGGR--PLRLEEDEPRP 265 (285)
T ss_pred hc-ccCc-ccCc--ccccccCCCCc
Confidence 75 5544 4443 46777666553
No 125
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.88 E-value=7e-08 Score=86.70 Aligned_cols=78 Identities=23% Similarity=0.393 Sum_probs=68.9
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCCeeE--------EEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCc
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKD--------LQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSS 173 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~--------~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~ 173 (402)
...|||.|||.++|.+++.++|++||.|.. |++-++..|.-+|=|+|.|-..|+..-|++.|++.. +.|+
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~-~rg~- 211 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDE-LRGK- 211 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCccc-ccCc-
Confidence 556999999999999999999999997753 788888889999999999999999999999999987 6665
Q ss_pred eeEEEEEcC
Q 015716 174 VPLVVKWAD 182 (402)
Q Consensus 174 ~~l~v~~a~ 182 (402)
.|+|..|.
T Consensus 212 -~~rVerAk 219 (382)
T KOG1548|consen 212 -KLRVERAK 219 (382)
T ss_pred -EEEEehhh
Confidence 57887773
No 126
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.86 E-value=2.9e-08 Score=93.80 Aligned_cols=54 Identities=24% Similarity=0.361 Sum_probs=50.2
Q ss_pred CCccEEEecCCCCCCHHHHHHHhh-ccCcEEEEEEEEeCCCCCcceEEEEEeecC
Q 015716 348 PGANLFIYHIPQEFGDQELGNAFQ-AFGRVLSAKVFVDKATGVSKCFGKYTVDLD 401 (402)
Q Consensus 348 ~~~~lfV~nLp~~~t~~~L~~~F~-~fG~v~~~~i~~d~~tg~skG~gFV~f~~~ 401 (402)
+..||||++||--++-++|-.+|. .||.|..|-|=.|++-+-.||-|=|+|.|-
T Consensus 369 prrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnq 423 (520)
T KOG0129|consen 369 PRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQ 423 (520)
T ss_pred ccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeeccc
Confidence 466899999999999999999998 799999999999988899999999999873
No 127
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.85 E-value=4.5e-09 Score=94.27 Aligned_cols=81 Identities=23% Similarity=0.473 Sum_probs=70.9
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 015716 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (402)
Q Consensus 8 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~ 87 (402)
..++...++|||++|-..++|.+|+++|.+||+|+++.++..+ ++|||+|.+.++|++|.+.+-+..++.| .
T Consensus 222 pPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G--~ 293 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVING--F 293 (377)
T ss_pred CCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecc--e
Confidence 4456678999999998899999999999999999999998765 4999999999999999998878777877 7
Q ss_pred CccccccCc
Q 015716 88 PLQVKYADG 96 (402)
Q Consensus 88 ~~~~~~~~~ 96 (402)
.+.+.|..+
T Consensus 294 Rl~i~Wg~~ 302 (377)
T KOG0153|consen 294 RLKIKWGRP 302 (377)
T ss_pred EEEEEeCCC
Confidence 777777766
No 128
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.81 E-value=1.4e-08 Score=91.19 Aligned_cols=78 Identities=35% Similarity=0.584 Sum_probs=68.8
Q ss_pred ccccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEE
Q 015716 99 ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (402)
Q Consensus 99 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v 178 (402)
+..-.+|||++|...+++.+|+++|-+||+|+++.+... +++|||+|.+.+.|+.|.++.-...+++|. +|.|
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-----~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~--Rl~i 297 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-----KGCAFVTFTTREAAEKAAEKSFNKLVINGF--RLKI 297 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-----cccceeeehhhHHHHHHHHhhcceeeecce--EEEE
Confidence 334678999999999999999999999999999999875 679999999999999998887777778886 5888
Q ss_pred EEcCC
Q 015716 179 KWADT 183 (402)
Q Consensus 179 ~~a~~ 183 (402)
.|..+
T Consensus 298 ~Wg~~ 302 (377)
T KOG0153|consen 298 KWGRP 302 (377)
T ss_pred EeCCC
Confidence 89988
No 129
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=6.7e-09 Score=93.16 Aligned_cols=91 Identities=20% Similarity=0.385 Sum_probs=78.7
Q ss_pred ccCcccccccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCC
Q 015716 93 YADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEG 171 (402)
Q Consensus 93 ~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g 171 (402)
+.+.......+.|||--|.+-+++++|.-+|+.||.|.+|.+++|. +|.+-.||||+|++.+++.+|.=+|+... ++.
T Consensus 230 lpdAd~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvL-IDD 308 (479)
T KOG0415|consen 230 LPDADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVL-IDD 308 (479)
T ss_pred CcccccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhccee-ecc
Confidence 3444555668899999999999999999999999999999999997 89999999999999999999999999865 665
Q ss_pred CceeEEEEEcCCHHH
Q 015716 172 SSVPLVVKWADTEKE 186 (402)
Q Consensus 172 ~~~~l~v~~a~~~~~ 186 (402)
+ .|.|.|+.+-..
T Consensus 309 r--RIHVDFSQSVsk 321 (479)
T KOG0415|consen 309 R--RIHVDFSQSVSK 321 (479)
T ss_pred c--eEEeehhhhhhh
Confidence 4 589998876543
No 130
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.73 E-value=2.4e-08 Score=94.79 Aligned_cols=82 Identities=21% Similarity=0.332 Sum_probs=71.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCc
Q 015716 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (402)
Q Consensus 10 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~ 89 (402)
...-.++|||.+|...+...||+.||++||+|+-.+|+.+..+.-.+.|+||++.+.++|.+||+.||... +.| +-|
T Consensus 401 rs~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTE-LHG--rmI 477 (940)
T KOG4661|consen 401 RSTLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTE-LHG--RMI 477 (940)
T ss_pred ccccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhh-hcc--eee
Confidence 35567899999999999999999999999999999999987667778899999999999999999998766 666 555
Q ss_pred ccccc
Q 015716 90 QVKYA 94 (402)
Q Consensus 90 ~~~~~ 94 (402)
.|..+
T Consensus 478 SVEka 482 (940)
T KOG4661|consen 478 SVEKA 482 (940)
T ss_pred eeeec
Confidence 55544
No 131
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.72 E-value=2.6e-08 Score=98.05 Aligned_cols=78 Identities=27% Similarity=0.622 Sum_probs=68.5
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEEc
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~a 181 (402)
++||||+.|+..++++||+++|+.||+|.+|+++.. ++||||......+|.+|+.+|+... +.++ .|+|.|+
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~-----R~cAfI~M~~RqdA~kalqkl~n~k-v~~k--~Iki~Wa 492 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP-----RGCAFIKMVRRQDAEKALQKLSNVK-VADK--TIKIAWA 492 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC-----CceeEEEEeehhHHHHHHHHHhccc-ccce--eeEEeee
Confidence 779999999999999999999999999999999865 8999999999999999999999766 4444 5888998
Q ss_pred CCHHHH
Q 015716 182 DTEKER 187 (402)
Q Consensus 182 ~~~~~~ 187 (402)
..+..+
T Consensus 493 ~g~G~k 498 (894)
T KOG0132|consen 493 VGKGPK 498 (894)
T ss_pred ccCCcc
Confidence 665433
No 132
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.71 E-value=1.1e-07 Score=71.48 Aligned_cols=67 Identities=22% Similarity=0.288 Sum_probs=61.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhc--CCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCC
Q 015716 15 VKLFVGQVPKHMTEAQLLAMFKEF--ALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKT 81 (402)
Q Consensus 15 ~~l~V~nLp~~~t~~~L~~~f~~~--G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~ 81 (402)
+||.|+|||...|.++|.+++.+. |...-+.+..|..++.+.|||||.|.+++.|.+..+.+++.++
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w 70 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKW 70 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCcc
Confidence 799999999999999999999874 6777788888988899999999999999999999999988874
No 133
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.70 E-value=1.7e-07 Score=91.14 Aligned_cols=54 Identities=13% Similarity=0.050 Sum_probs=47.7
Q ss_pred CCCccEEEecCCCCCCHHHHHHHhhccCcEEE-EEEEEeCCCCCcceEEEEEeecC
Q 015716 347 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLS-AKVFVDKATGVSKCFGKYTVDLD 401 (402)
Q Consensus 347 ~~~~~lfV~nLp~~~t~~~L~~~F~~fG~v~~-~~i~~d~~tg~skG~gFV~f~~~ 401 (402)
+.+.+|||..||..+++.+..+.|+.--.|++ +.|.+-+ +++-++-|||.|-++
T Consensus 432 ~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~ 486 (944)
T KOG4307|consen 432 GAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHP 486 (944)
T ss_pred CccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccc
Confidence 35778999999999999999999998777776 7777777 899999999999874
No 134
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.69 E-value=5.4e-08 Score=81.48 Aligned_cols=80 Identities=26% Similarity=0.427 Sum_probs=69.0
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccC-CCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEE
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFSIY-GTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~~~-G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~ 179 (402)
..-+|+..+|.-+.+.+|..+|.+| |.|..+++-|+. +|.|+|||||+|++.+.|.-|-+.||+.. +.++ .|.|.
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYL-l~e~--lL~c~ 125 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYL-LMEH--LLECH 125 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhh-hhhh--eeeeE
Confidence 5679999999999999999999998 678888886765 99999999999999999999999999965 5555 36777
Q ss_pred EcCCH
Q 015716 180 WADTE 184 (402)
Q Consensus 180 ~a~~~ 184 (402)
+-.++
T Consensus 126 vmppe 130 (214)
T KOG4208|consen 126 VMPPE 130 (214)
T ss_pred EeCch
Confidence 66655
No 135
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.62 E-value=5.2e-08 Score=83.93 Aligned_cols=83 Identities=23% Similarity=0.434 Sum_probs=73.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCc
Q 015716 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (402)
Q Consensus 10 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~ 89 (402)
-+..+.+||.+.|-.+++++-|...|.+|-.-...++++|+.|++++||+||.|.+.+++.+|++.|+++.+ . .++|
T Consensus 186 w~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyV-g--srpi 262 (290)
T KOG0226|consen 186 WDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYV-G--SRPI 262 (290)
T ss_pred CccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhccccc-c--cchh
Confidence 355778999999999999999999999999999999999999999999999999999999999999987764 3 3677
Q ss_pred cccccC
Q 015716 90 QVKYAD 95 (402)
Q Consensus 90 ~~~~~~ 95 (402)
.++...
T Consensus 263 klRkS~ 268 (290)
T KOG0226|consen 263 KLRKSE 268 (290)
T ss_pred Hhhhhh
Confidence 665443
No 136
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.60 E-value=1.1e-08 Score=93.33 Aligned_cols=71 Identities=28% Similarity=0.366 Sum_probs=56.8
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCC
Q 015716 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGS 172 (402)
Q Consensus 101 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~ 172 (402)
...++|++++.+.+.+.++..++..+|........... ...+++++.+.|...+.+..|+.. .+...+.++
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~-s~~~~~~~~ 158 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEE-SGSKVLDGN 158 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHh-hhccccccc
Confidence 46789999999999999899999999987777666533 677899999999999999999974 443334433
No 137
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.59 E-value=1.6e-07 Score=82.63 Aligned_cols=80 Identities=21% Similarity=0.389 Sum_probs=71.1
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEE
Q 015716 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (402)
Q Consensus 100 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~ 179 (402)
....+|+|.||++.++++||+++|..||.++.+.+..++.|.+.|.|-|.|...++|.+|++.+||.. ++|.. +.+.
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~-ldG~~--mk~~ 157 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVA-LDGRP--MKIE 157 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcc-cCCce--eeeE
Confidence 33578999999999999999999999999999999999999999999999999999999999999954 88875 4444
Q ss_pred EcC
Q 015716 180 WAD 182 (402)
Q Consensus 180 ~a~ 182 (402)
...
T Consensus 158 ~i~ 160 (243)
T KOG0533|consen 158 IIS 160 (243)
T ss_pred Eec
Confidence 443
No 138
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.59 E-value=1.7e-07 Score=82.45 Aligned_cols=81 Identities=25% Similarity=0.411 Sum_probs=70.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCc
Q 015716 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (402)
Q Consensus 10 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~ 89 (402)
.+...++|+|.|||..++++||+++|++||.+..+-+..++. |.+.|.|-|.|...++|.+|++.+++ ..+.| .++
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~-G~s~Gta~v~~~r~~DA~~avk~~~g-v~ldG--~~m 154 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRA-GRSLGTADVSFNRRDDAERAVKKYNG-VALDG--RPM 154 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCC-CCCCccceeeecchHhHHHHHHHhcC-cccCC--cee
Confidence 344558899999999999999999999999999999999985 99999999999999999999999988 55777 555
Q ss_pred ccccc
Q 015716 90 QVKYA 94 (402)
Q Consensus 90 ~~~~~ 94 (402)
.+...
T Consensus 155 k~~~i 159 (243)
T KOG0533|consen 155 KIEII 159 (243)
T ss_pred eeEEe
Confidence 54443
No 139
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.53 E-value=1.8e-07 Score=89.02 Aligned_cols=79 Identities=18% Similarity=0.382 Sum_probs=69.4
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEE
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~ 180 (402)
.++|||.+|...+...+|+++|++||+|+..+++.+. +-..++|+||++.+.++|.+||+.|+... +.|+. |.|..
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTE-LHGrm--ISVEk 481 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTE-LHGRM--ISVEK 481 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhh-hccee--eeeee
Confidence 6789999999999999999999999999999999875 44458999999999999999999999988 67764 77777
Q ss_pred cCC
Q 015716 181 ADT 183 (402)
Q Consensus 181 a~~ 183 (402)
++.
T Consensus 482 aKN 484 (940)
T KOG4661|consen 482 AKN 484 (940)
T ss_pred ccc
Confidence 744
No 140
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.51 E-value=1.3e-08 Score=93.38 Aligned_cols=154 Identities=23% Similarity=0.401 Sum_probs=117.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCcccccc
Q 015716 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYA 94 (402)
Q Consensus 15 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~~~~~ 94 (402)
.++|++||.+.++.+||..+|...-.-.+-.++ ...||+||.+.+...|-+|++.++++.-+.| +.+.+...
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl------~k~gyafvd~pdq~wa~kaie~~sgk~elqG--kr~e~~~s 73 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFL------VKSGYAFVDCPDQQWANKAIETLSGKVELQG--KRQEVEHS 73 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCccee------eecceeeccCCchhhhhhhHHhhchhhhhcC--ceeeccch
Confidence 578999999999999999999764111111111 2337999999999999999999988877777 66666666
Q ss_pred CcccccccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCce
Q 015716 95 DGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 174 (402)
Q Consensus 95 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~ 174 (402)
-++..+ .+++-|+|+|....|+.|..+...||.++.|....-.. ..-..-|+|...+.++.|+.+++|..+ ...
T Consensus 74 v~kkqr-srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~--etavvnvty~~~~~~~~ai~kl~g~Q~-en~-- 147 (584)
T KOG2193|consen 74 VPKKQR-SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDS--ETAVVNVTYSAQQQHRQAIHKLNGPQL-ENQ-- 147 (584)
T ss_pred hhHHHH-hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccch--HHHHHHHHHHHHHHHHHHHHhhcchHh-hhh--
Confidence 555444 56799999999999999999999999999987643211 123445889999999999999999874 333
Q ss_pred eEEEEEcC
Q 015716 175 PLVVKWAD 182 (402)
Q Consensus 175 ~l~v~~a~ 182 (402)
.+.+.|--
T Consensus 148 ~~k~~YiP 155 (584)
T KOG2193|consen 148 HLKVGYIP 155 (584)
T ss_pred hhhcccCc
Confidence 35666543
No 141
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.47 E-value=2.4e-07 Score=88.15 Aligned_cols=66 Identities=23% Similarity=0.325 Sum_probs=55.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 015716 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76 (402)
Q Consensus 11 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l 76 (402)
.....+|||+|||.++++++|+++|..||.|+...|....-.++...||||+|.+.++++.||++-
T Consensus 285 ~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As 350 (419)
T KOG0116|consen 285 RADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS 350 (419)
T ss_pred eecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC
Confidence 334556999999999999999999999999999888765422444489999999999999999873
No 142
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.39 E-value=3.7e-07 Score=80.56 Aligned_cols=82 Identities=20% Similarity=0.346 Sum_probs=71.6
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 015716 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (402)
Q Consensus 8 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~ 87 (402)
.+...+...+||+|+...+|.+++...|+.||.|..+.|..|+.++.++||+||+|.+.+.+++++. |++.. +.+ +
T Consensus 95 ~~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~-i~~--~ 170 (231)
T KOG4209|consen 95 RQKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSE-IPG--P 170 (231)
T ss_pred hhhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcc-ccc--c
Confidence 3566788999999999999999999999999999999999999988999999999999999999999 75555 666 5
Q ss_pred Cccccc
Q 015716 88 PLQVKY 93 (402)
Q Consensus 88 ~~~~~~ 93 (402)
.+.+.+
T Consensus 171 ~i~vt~ 176 (231)
T KOG4209|consen 171 AIEVTL 176 (231)
T ss_pred cceeee
Confidence 555443
No 143
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.38 E-value=7.6e-07 Score=84.76 Aligned_cols=54 Identities=24% Similarity=0.515 Sum_probs=46.9
Q ss_pred CCccEEEecCCCCCCHHHHHHHhhccCcEEEEEEEEeCCCCCcceEEEEEeecC
Q 015716 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGKYTVDLD 401 (402)
Q Consensus 348 ~~~~lfV~nLp~~~t~~~L~~~F~~fG~v~~~~i~~d~~tg~skG~gFV~f~~~ 401 (402)
....|||+|||.++++.+|.+.|++||.|+...|.+..-.++..+||||+|.+.
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~ 340 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENA 340 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeec
Confidence 455699999999999999999999999999999977643466669999999775
No 144
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.27 E-value=0.00016 Score=65.33 Aligned_cols=71 Identities=20% Similarity=0.330 Sum_probs=61.6
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCC--CeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCc
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFSIYG--TIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSS 173 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~~~G--~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~ 173 (402)
...+||+||-+.+|++||.+....-| .+.++++..++ +|.|||||+|...+....++.++.|-.+. +.|.+
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~-iHGQ~ 153 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKT-IHGQS 153 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccce-ecCCC
Confidence 56799999999999999999998877 57777777776 79999999999999999999999888777 66665
No 145
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.22 E-value=2.1e-06 Score=84.10 Aligned_cols=82 Identities=23% Similarity=0.427 Sum_probs=68.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC---CCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 015716 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKT---TRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (402)
Q Consensus 11 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~---t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~ 87 (402)
++..++|||+||++.++++.|...|..||+|.+++|+.-+. ..+-+-||||.|-+..+|++|++.|++.. +.+ .
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~i-v~~--~ 247 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGII-VME--Y 247 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhccee-eee--e
Confidence 56778999999999999999999999999999999987542 24566799999999999999999997765 433 6
Q ss_pred CccccccC
Q 015716 88 PLQVKYAD 95 (402)
Q Consensus 88 ~~~~~~~~ 95 (402)
.+++.|.+
T Consensus 248 e~K~gWgk 255 (877)
T KOG0151|consen 248 EMKLGWGK 255 (877)
T ss_pred eeeecccc
Confidence 66666654
No 146
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.19 E-value=1.5e-05 Score=60.09 Aligned_cols=83 Identities=16% Similarity=0.225 Sum_probs=65.2
Q ss_pred ceEEEcCCCCCCcHHHHHHhhccC--CCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCC-CceeEEE
Q 015716 103 HKLFIGMLPKNVSEAEVSALFSIY--GTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEG-SSVPLVV 178 (402)
Q Consensus 103 ~~l~v~nlp~~~t~~~l~~~f~~~--G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g-~~~~l~v 178 (402)
+||-|+|||...|.++|.+++... |...-+.++-|- ++.+.|||||-|.+++.|.+-.+.++|..+-.. ......|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 589999999999999999888653 556666676665 677899999999999999999999999884322 2234577
Q ss_pred EEcCCHH
Q 015716 179 KWADTEK 185 (402)
Q Consensus 179 ~~a~~~~ 185 (402)
.||.-..
T Consensus 82 ~yAriQG 88 (97)
T PF04059_consen 82 SYARIQG 88 (97)
T ss_pred ehhHhhC
Confidence 7776543
No 147
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.16 E-value=1.5e-06 Score=83.20 Aligned_cols=68 Identities=25% Similarity=0.472 Sum_probs=59.9
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCC
Q 015716 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGS 172 (402)
Q Consensus 100 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~ 172 (402)
-..++|+|-|||.++++++|+++|+.||+|..|+..+. .+|.+||+|.+..+|++|+++|++.. +.|+
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~----~~~~~~v~FyDvR~A~~Alk~l~~~~-~~~~ 140 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN----KRGIVFVEFYDVRDAERALKALNRRE-IAGK 140 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc----cCceEEEEEeehHhHHHHHHHHHHHH-hhhh
Confidence 34789999999999999999999999999999765443 47899999999999999999999998 5555
No 148
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.14 E-value=1.1e-05 Score=57.88 Aligned_cols=70 Identities=20% Similarity=0.368 Sum_probs=46.9
Q ss_pred ceEEEcCCCCCCcHHH----HHHhhccCC-CeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEE
Q 015716 103 HKLFIGMLPKNVSEAE----VSALFSIYG-TIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLV 177 (402)
Q Consensus 103 ~~l~v~nlp~~~t~~~----l~~~f~~~G-~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~ 177 (402)
..|+|.|||.+.+... |++++..|| +|.+|. .+.|+|.|.+.+.|.+|.+.|+|..+++. +|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~---------~~tAilrF~~~~~A~RA~KRmegEdVfG~---kI~ 70 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS---------GGTAILRFPNQEFAERAQKRMEGEDVFGN---KIS 70 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----------TT-EEEEESSHHHHHHHHHHHTT--SSSS-----E
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe---------CCEEEEEeCCHHHHHHHHHhhcccccccc---eEE
Confidence 3589999999888755 567888897 577661 45799999999999999999999996554 388
Q ss_pred EEEcCCH
Q 015716 178 VKWADTE 184 (402)
Q Consensus 178 v~~a~~~ 184 (402)
|.+....
T Consensus 71 v~~~~~~ 77 (90)
T PF11608_consen 71 VSFSPKN 77 (90)
T ss_dssp EESS--S
T ss_pred EEEcCCc
Confidence 8887443
No 149
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.09 E-value=1.2e-06 Score=79.89 Aligned_cols=146 Identities=14% Similarity=0.185 Sum_probs=104.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC---CCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCccc
Q 015716 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKT---TRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 91 (402)
Q Consensus 15 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~---t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~~ 91 (402)
..|.|.||.+.+|.+++..||.-.|+|.+++|+.+.. -......|||.|.+..++.-|-..- |.+++.. ..|.+
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLt-ntvfvdr--aliv~ 84 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLT-NTVFVDR--ALIVR 84 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhc-cceeeee--eEEEE
Confidence 3789999999999999999999999999999987432 2345568999999988776663322 3322211 00000
Q ss_pred ccc--------------------------------------------------------CcccccccceEEEcCCCCCCc
Q 015716 92 KYA--------------------------------------------------------DGELERLEHKLFIGMLPKNVS 115 (402)
Q Consensus 92 ~~~--------------------------------------------------------~~~~~~~~~~l~v~nlp~~~t 115 (402)
-+. ..+.+...++++|.+|+..+.
T Consensus 85 p~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~ 164 (479)
T KOG4676|consen 85 PYGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAI 164 (479)
T ss_pred ecCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhc
Confidence 000 011112256799999999999
Q ss_pred HHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCc
Q 015716 116 EAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKH 167 (402)
Q Consensus 116 ~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 167 (402)
..++.+.|..+|+|....+-.. ...-+|-+.|........|++. +|..
T Consensus 165 l~e~~e~f~r~Gev~ya~~ask---~~s~~c~~sf~~qts~~halr~-~gre 212 (479)
T KOG4676|consen 165 LPESGESFERKGEVSYAHTASK---SRSSSCSHSFRKQTSSKHALRS-HGRE 212 (479)
T ss_pred chhhhhhhhhcchhhhhhhhcc---CCCcchhhhHhhhhhHHHHHHh-cchh
Confidence 9999999999999988777543 2345777999999999999874 4443
No 150
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.09 E-value=5.5e-06 Score=81.23 Aligned_cols=79 Identities=19% Similarity=0.447 Sum_probs=68.4
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCC----CCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEE
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQ----QTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLV 177 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~----~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~ 177 (402)
.++|||+||++.++++.|-..|..||.|.+++|+..++ -+.+.++||-|-+..+|++|++.|+|..+ ...++.
T Consensus 174 TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv---~~~e~K 250 (877)
T KOG0151|consen 174 TTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIV---MEYEMK 250 (877)
T ss_pred ccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceee---eeeeee
Confidence 67899999999999999999999999999999987652 34468999999999999999999999875 334688
Q ss_pred EEEcCC
Q 015716 178 VKWADT 183 (402)
Q Consensus 178 v~~a~~ 183 (402)
+.|++.
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 888754
No 151
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.07 E-value=8.2e-06 Score=72.11 Aligned_cols=81 Identities=17% Similarity=0.326 Sum_probs=69.4
Q ss_pred cccccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeE
Q 015716 98 LERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPL 176 (402)
Q Consensus 98 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l 176 (402)
.+.....+||+|+.+.++.+++...|+.||.|..+.+..|. .+.++||+||+|.+.+.+.+|+. |+|.. +.++ .+
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~-i~~~--~i 172 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSE-IPGP--AI 172 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcc-cccc--cc
Confidence 34457789999999999999999999999999999999988 56789999999999999999998 99988 5555 35
Q ss_pred EEEEcC
Q 015716 177 VVKWAD 182 (402)
Q Consensus 177 ~v~~a~ 182 (402)
.|.+..
T Consensus 173 ~vt~~r 178 (231)
T KOG4209|consen 173 EVTLKR 178 (231)
T ss_pred eeeeee
Confidence 555443
No 152
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.97 E-value=1.8e-05 Score=61.06 Aligned_cols=58 Identities=17% Similarity=0.222 Sum_probs=39.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcC
Q 015716 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHN 78 (402)
Q Consensus 15 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~ 78 (402)
+.|.|.+++..++.++|++.|++||.|..|.+.+... -|||.|.+.++|++|++.+..
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~~~ 59 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKLKE 59 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHHHHHh
Confidence 5789999999999999999999999999998876543 699999999999999998743
No 153
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.97 E-value=4.2e-05 Score=58.99 Aligned_cols=71 Identities=27% Similarity=0.416 Sum_probs=44.1
Q ss_pred ceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCC----cccCCCceeEEE
Q 015716 103 HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK----HKMEGSSVPLVV 178 (402)
Q Consensus 103 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~----~~~~g~~~~l~v 178 (402)
+.|.|.++...++.++|++.|+.||.|..|++.+. ..-|+|.|.+.+.|++|+..+.-. ..+.+..+.+.|
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G-----~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~v 76 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG-----DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEV 76 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE-
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC-----CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEE
Confidence 46888999999999999999999999999999875 346999999999999999887543 224555444444
No 154
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.94 E-value=6.2e-06 Score=83.02 Aligned_cols=69 Identities=20% Similarity=0.303 Sum_probs=60.2
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccC
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKME 170 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~ 170 (402)
.++||++||+..+++.+|+..|..+|.|.+|+|.+-.-+....|+||.|.+...+-.|.-.+.+..+..
T Consensus 372 trTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~ 440 (975)
T KOG0112|consen 372 TRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGN 440 (975)
T ss_pred hhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCcccc
Confidence 678999999999999999999999999999999876555556799999999999999988888776433
No 155
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.81 E-value=0.00012 Score=52.64 Aligned_cols=67 Identities=16% Similarity=0.325 Sum_probs=44.0
Q ss_pred CeEEEcCCCCCCCHHHH----HHHHHhcC-CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCc
Q 015716 15 VKLFVGQVPKHMTEAQL----LAMFKEFA-LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (402)
Q Consensus 15 ~~l~V~nLp~~~t~~~L----~~~f~~~G-~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~ 89 (402)
+.|+|.|||.+.+-..| +.++.-|| +|.+|. .+.|.|.|.+.+.|++|.+.|++.. +.| ..|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEd-VfG--~kI 69 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGED-VFG--NKI 69 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT---SSS--S--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccc-ccc--ceE
Confidence 46999999999997766 45566675 677651 2479999999999999999997766 555 566
Q ss_pred ccccc
Q 015716 90 QVKYA 94 (402)
Q Consensus 90 ~~~~~ 94 (402)
.+++.
T Consensus 70 ~v~~~ 74 (90)
T PF11608_consen 70 SVSFS 74 (90)
T ss_dssp EEESS
T ss_pred EEEEc
Confidence 66654
No 156
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.80 E-value=3.6e-05 Score=70.23 Aligned_cols=83 Identities=22% Similarity=0.338 Sum_probs=72.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeE--------EEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCC
Q 015716 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDE--------VNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKT 81 (402)
Q Consensus 10 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~--------v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~ 81 (402)
.....-+|||-+||..+++++|.++|.+||.|.. |.|.+|+.|++.+|-|.|.|.+..+|+.||..+++..
T Consensus 62 ~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkd- 140 (351)
T KOG1995|consen 62 DKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKD- 140 (351)
T ss_pred cccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccc-
Confidence 3567789999999999999999999999998764 7788899999999999999999999999999997776
Q ss_pred CCCCCCCccccccC
Q 015716 82 LPGASSPLQVKYAD 95 (402)
Q Consensus 82 ~~g~~~~~~~~~~~ 95 (402)
+++ ..|+|..+.
T Consensus 141 f~g--n~ikvs~a~ 152 (351)
T KOG1995|consen 141 FCG--NTIKVSLAE 152 (351)
T ss_pred ccC--CCchhhhhh
Confidence 666 667766654
No 157
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.74 E-value=2.7e-05 Score=71.35 Aligned_cols=67 Identities=10% Similarity=0.261 Sum_probs=53.8
Q ss_pred ceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCC----CCcceEEEEEeCCHHHHHHHHHHHcCCcccC
Q 015716 103 HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQ----QTSKGCAFLKYETKEQALAALEAINGKHKME 170 (402)
Q Consensus 103 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~----~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~ 170 (402)
..|.|.||.+.++.++++.+|.-.|+|..+.++...+ ......|||.|.+...+..|-. |....+++
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvd 78 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVD 78 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeee
Confidence 3789999999999999999999999999999876431 2335689999999999888865 44444444
No 158
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.71 E-value=2.6e-05 Score=72.12 Aligned_cols=77 Identities=26% Similarity=0.395 Sum_probs=57.7
Q ss_pred ceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEEcC
Q 015716 103 HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWAD 182 (402)
Q Consensus 103 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~a~ 182 (402)
..+|++||.+.++..+|+.+|...---.+-.++. ..||+||.+.+...|.+|++.++|+.-+.|. ++.+....
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~-----k~gyafvd~pdq~wa~kaie~~sgk~elqGk--r~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-----KSGYAFVDCPDQQWANKAIETLSGKVELQGK--RQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee-----ecceeeccCCchhhhhhhHHhhchhhhhcCc--eeeccchh
Confidence 4689999999999999999997652111111221 2689999999999999999999998767776 46666655
Q ss_pred CHHH
Q 015716 183 TEKE 186 (402)
Q Consensus 183 ~~~~ 186 (402)
+++.
T Consensus 75 ~kkq 78 (584)
T KOG2193|consen 75 PKKQ 78 (584)
T ss_pred hHHH
Confidence 5543
No 159
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.65 E-value=0.00014 Score=48.53 Aligned_cols=52 Identities=19% Similarity=0.390 Sum_probs=41.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHH
Q 015716 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73 (402)
Q Consensus 15 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai 73 (402)
+.|-|.|.+++.. +++..+|..||+|..+.+-... -+.+|+|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~~------~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPEST------NWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCCCC------cEEEEEECCHHHHHhhC
Confidence 5688999987765 4555689999999998875322 28999999999999985
No 160
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.46 E-value=0.00024 Score=68.39 Aligned_cols=77 Identities=19% Similarity=0.314 Sum_probs=62.1
Q ss_pred cceEEEcCCCCC--CcH----HHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCcee
Q 015716 102 EHKLFIGMLPKN--VSE----AEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVP 175 (402)
Q Consensus 102 ~~~l~v~nlp~~--~t~----~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~ 175 (402)
...|+|.|+|-- ... .-|.++|+++|++....++.+..|..+||.|++|.+..+|+.|++.|||..+...+ .
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknH--t 135 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNH--T 135 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccc--e
Confidence 567999999842 222 33668999999999999998988889999999999999999999999999854433 4
Q ss_pred EEEEE
Q 015716 176 LVVKW 180 (402)
Q Consensus 176 l~v~~ 180 (402)
..|..
T Consensus 136 f~v~~ 140 (698)
T KOG2314|consen 136 FFVRL 140 (698)
T ss_pred EEeeh
Confidence 55543
No 161
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.45 E-value=0.00039 Score=66.95 Aligned_cols=79 Identities=19% Similarity=0.183 Sum_probs=63.4
Q ss_pred cccccCCCCCCeEEEcCCCCCCC--HH----HHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcC
Q 015716 5 KKEKKSSEERVKLFVGQVPKHMT--EA----QLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHN 78 (402)
Q Consensus 5 ~~~~~~~~~~~~l~V~nLp~~~t--~~----~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~ 78 (402)
+++..++.-...|+|-|+|.--. -+ -|.++|+++|+|....+..+.. |.++||.|++|.+..+|+.|++.||+
T Consensus 49 k~p~~~eg~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~-ggtkG~lf~E~~~~~~A~~aVK~l~G 127 (698)
T KOG2314|consen 49 KRPVTAEGFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE-GGTKGYLFVEYASMRDAKKAVKSLNG 127 (698)
T ss_pred hCcCccCCcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc-CCeeeEEEEEecChhhHHHHHHhccc
Confidence 33444557778899999986422 22 4567899999999999988886 55999999999999999999999999
Q ss_pred CCCCCC
Q 015716 79 KKTLPG 84 (402)
Q Consensus 79 ~~~~~g 84 (402)
+.+...
T Consensus 128 ~~ldkn 133 (698)
T KOG2314|consen 128 KRLDKN 133 (698)
T ss_pred ceeccc
Confidence 886554
No 162
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.44 E-value=0.00013 Score=67.89 Aligned_cols=67 Identities=28% Similarity=0.435 Sum_probs=56.8
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeC---C-C--CC--------cceEEEEEeCCHHHHHHHHHHHcCC
Q 015716 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG---S-Q--QT--------SKGCAFLKYETKEQALAALEAINGK 166 (402)
Q Consensus 101 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~---~-~--~~--------~~g~afV~f~~~~~A~~A~~~l~g~ 166 (402)
..++|.+-|||.+-.-+.|.++|..+|.|..|+|... + + +. .+-+|+|+|+..+.|.+|.+.|+..
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 4789999999999999999999999999999999875 2 1 11 2467999999999999999988654
Q ss_pred c
Q 015716 167 H 167 (402)
Q Consensus 167 ~ 167 (402)
.
T Consensus 310 ~ 310 (484)
T KOG1855|consen 310 Q 310 (484)
T ss_pred h
Confidence 3
No 163
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.38 E-value=0.00019 Score=64.94 Aligned_cols=74 Identities=18% Similarity=0.319 Sum_probs=64.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcC--CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCC
Q 015716 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFA--LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (402)
Q Consensus 10 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G--~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g 84 (402)
.......+||+||-|.+|++||.+.+...| .+.+++++.++..|.++|||+|..-+..+.++.++.|-.+. +.|
T Consensus 76 ~~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~-iHG 151 (498)
T KOG4849|consen 76 SEGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKT-IHG 151 (498)
T ss_pred ccCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccce-ecC
Confidence 344556799999999999999999998887 68889999999889999999999999999999999985444 666
No 164
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.31 E-value=0.00054 Score=45.62 Aligned_cols=52 Identities=25% Similarity=0.468 Sum_probs=41.9
Q ss_pred ceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHH
Q 015716 103 HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAAL 160 (402)
Q Consensus 103 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~ 160 (402)
+.|-|.+.+.+..+. +...|+.||+|..+.+... ....+|+|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~-----~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPES-----TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCC-----CcEEEEEECCHHHHHhhC
Confidence 467788888776655 5568889999999888732 568999999999999985
No 165
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.31 E-value=0.0006 Score=51.77 Aligned_cols=70 Identities=16% Similarity=0.213 Sum_probs=47.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEe-eCC------CCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCC
Q 015716 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNII-KDK------TTRASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (402)
Q Consensus 12 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~-~~~------~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g 84 (402)
...+-|.|-+.|+. ....|.++|++||.|.+..-. ++. .......+-.|+|.++.+|++||.. |..++.|
T Consensus 4 ~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~--NG~i~~g 80 (100)
T PF05172_consen 4 DSETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK--NGTIFSG 80 (100)
T ss_dssp GGCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT--TTEEETT
T ss_pred cCCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh--CCeEEcC
Confidence 45667999999988 677888999999999887511 110 0012234899999999999999987 7776766
No 166
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.31 E-value=0.00028 Score=63.56 Aligned_cols=79 Identities=11% Similarity=0.370 Sum_probs=58.4
Q ss_pred CeEEEcCCCCCCCHHHH------HHHHHhcCCeeEEEEeeCCCC-CCcccE--EEEEeCCHHHHHHHHHHhcCCCCCCCC
Q 015716 15 VKLFVGQVPKHMTEAQL------LAMFKEFALVDEVNIIKDKTT-RASRGC--CFVICPSRQEADKAVNACHNKKTLPGA 85 (402)
Q Consensus 15 ~~l~V~nLp~~~t~~~L------~~~f~~~G~v~~v~~~~~~~t-~~~~g~--afV~F~~~~~a~~ai~~l~~~~~~~g~ 85 (402)
.-|||-+||+.+..+++ .++|.+||.|..|.|-+...+ ....+. .||+|.+.|+|.+||....+. ++.|
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs-~~DG- 192 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGS-LLDG- 192 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccc-cccC-
Confidence 45889999888777763 579999999998877554311 122232 399999999999999998554 4777
Q ss_pred CCCccccccCc
Q 015716 86 SSPLQVKYADG 96 (402)
Q Consensus 86 ~~~~~~~~~~~ 96 (402)
+.++..+...
T Consensus 193 -r~lkatYGTT 202 (480)
T COG5175 193 -RVLKATYGTT 202 (480)
T ss_pred -ceEeeecCch
Confidence 7787777653
No 167
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.20 E-value=0.00067 Score=59.16 Aligned_cols=89 Identities=17% Similarity=0.207 Sum_probs=74.1
Q ss_pred HHHHHHHHhcCCCCCCCCCCCccccccCcccccccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEE
Q 015716 68 EADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAF 147 (402)
Q Consensus 68 ~a~~ai~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~af 147 (402)
-|+.|-..| +..+..+ +.+++.++.. ..|||.||..-+..+.|++.|+.||.|....+.-|..++..+-++
T Consensus 6 ~ae~ak~eL-d~~~~~~--~~lr~rfa~~------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~ 76 (275)
T KOG0115|consen 6 LAEIAKREL-DGRFPKG--RSLRVRFAMH------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGI 76 (275)
T ss_pred HHHHHHHhc-CCCCCCC--CceEEEeecc------ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccch
Confidence 355566666 4455666 7888888763 469999999999999999999999999998888888888889999
Q ss_pred EEeCCHHHHHHHHHHHcC
Q 015716 148 LKYETKEQALAALEAING 165 (402)
Q Consensus 148 V~f~~~~~A~~A~~~l~g 165 (402)
|.|...-.|.+|++.++-
T Consensus 77 v~~~~k~~a~~a~rr~~~ 94 (275)
T KOG0115|consen 77 VEFAKKPNARKAARRCRE 94 (275)
T ss_pred hhhhcchhHHHHHHHhcc
Confidence 999999999999988753
No 168
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.11 E-value=0.00044 Score=60.23 Aligned_cols=71 Identities=14% Similarity=0.257 Sum_probs=59.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC--------CCcccE----EEEEeCCHHHHHHHHHHhcCCC
Q 015716 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTT--------RASRGC----CFVICPSRQEADKAVNACHNKK 80 (402)
Q Consensus 13 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t--------~~~~g~----afV~F~~~~~a~~ai~~l~~~~ 80 (402)
..-.||+++||+.++-.-|+++|+.||.|-.|.+-....+ +.+.++ |.|+|.+...|.++.+.|||..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 5567999999999999999999999999999998776554 222222 7899999999999999998877
Q ss_pred CCCC
Q 015716 81 TLPG 84 (402)
Q Consensus 81 ~~~g 84 (402)
+.|
T Consensus 153 -Igg 155 (278)
T KOG3152|consen 153 -IGG 155 (278)
T ss_pred -cCC
Confidence 444
No 169
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.06 E-value=0.0005 Score=62.93 Aligned_cols=82 Identities=28% Similarity=0.398 Sum_probs=67.1
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCCeeE--------EEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccC
Q 015716 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKD--------LQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKME 170 (402)
Q Consensus 100 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~--------~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~ 170 (402)
....+|||.+||..+++++|.++|.++|.|.. |.|-++. +++.|+-|.|.|.+...|+.|+.-++++. +.
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkd-f~ 142 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKD-FC 142 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccc-cc
Confidence 33678999999999999999999999997753 4444554 78899999999999999999999999998 44
Q ss_pred CCceeEEEEEcCCH
Q 015716 171 GSSVPLVVKWADTE 184 (402)
Q Consensus 171 g~~~~l~v~~a~~~ 184 (402)
+. .|.|..|..+
T Consensus 143 gn--~ikvs~a~~r 154 (351)
T KOG1995|consen 143 GN--TIKVSLAERR 154 (351)
T ss_pred CC--Cchhhhhhhc
Confidence 43 4666666544
No 170
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.04 E-value=0.00062 Score=63.50 Aligned_cols=67 Identities=15% Similarity=0.221 Sum_probs=57.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeC---CCC--C-C-------cccEEEEEeCCHHHHHHHHHHhcC
Q 015716 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKD---KTT--R-A-------SRGCCFVICPSRQEADKAVNACHN 78 (402)
Q Consensus 12 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~---~~t--~-~-------~~g~afV~F~~~~~a~~ai~~l~~ 78 (402)
-..++|.+-|||.+-.-+.|.++|+.+|.|..|+|+.- ... + . .+-+|+|+|+..+.|.+|.+.|+.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 47899999999999999999999999999999999875 111 1 1 255799999999999999998854
No 171
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.99 E-value=0.0051 Score=42.02 Aligned_cols=54 Identities=20% Similarity=0.361 Sum_probs=46.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhc----CCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 015716 14 RVKLFVGQVPKHMTEAQLLAMFKEF----ALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76 (402)
Q Consensus 14 ~~~l~V~nLp~~~t~~~L~~~f~~~----G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l 76 (402)
..+|+|+|+ .+++.+||+.+|..| ++ ..|..+-|.. |=|.|.+.+.|.+|+..|
T Consensus 5 peavhirGv-d~lsT~dI~~y~~~y~~~~~~-~~IEWIdDtS-------cNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGV-DELSTDDIKAYFSEYFDEEGP-FRIEWIDDTS-------CNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcC-CCCCHHHHHHHHHHhcccCCC-ceEEEecCCc-------EEEEECCHHHHHHHHHcC
Confidence 467999999 558999999999999 54 6788888863 889999999999999764
No 172
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.91 E-value=0.0035 Score=45.11 Aligned_cols=58 Identities=21% Similarity=0.372 Sum_probs=43.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q 015716 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACH 77 (402)
Q Consensus 11 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~ 77 (402)
+......+|. +|..+...||.++|+.||.| .|..+-|. -|||...+.+.|..|+..+.
T Consensus 6 P~RdHVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~dT-------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 6 PSRDHVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWINDT-------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp -SGCCEEEEE---TT--HHHHHHHCCCCCCE-EEEEECTT-------EEEEEECCCHHHHHHHHHHT
T ss_pred CCcceEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcCC-------cEEEEeecHHHHHHHHHHhc
Confidence 3344555665 99999999999999999997 57777664 59999999999999998874
No 173
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.87 E-value=0.0031 Score=57.05 Aligned_cols=80 Identities=23% Similarity=0.504 Sum_probs=61.5
Q ss_pred cceEEEcCCCCCCcHHH----H--HHhhccCCCeeEEEEeeCC-C---CCcceEEEEEeCCHHHHHHHHHHHcCCcccCC
Q 015716 102 EHKLFIGMLPKNVSEAE----V--SALFSIYGTIKDLQILRGS-Q---QTSKGCAFLKYETKEQALAALEAINGKHKMEG 171 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~----l--~~~f~~~G~v~~~~i~~~~-~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g 171 (402)
++-+||-+|+..+..|+ | .++|.+||.|..|.|-+.. . ..+.--.||+|.+.|+|.+||...+|.. ++|
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~-~DG 192 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSL-LDG 192 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccc-ccC
Confidence 45689999999887776 2 4899999999998886543 1 1111235999999999999999999986 888
Q ss_pred CceeEEEEEcCCH
Q 015716 172 SSVPLVVKWADTE 184 (402)
Q Consensus 172 ~~~~l~v~~a~~~ 184 (402)
+ .|+..+...+
T Consensus 193 r--~lkatYGTTK 203 (480)
T COG5175 193 R--VLKATYGTTK 203 (480)
T ss_pred c--eEeeecCchH
Confidence 7 4777777554
No 174
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.82 E-value=0.0029 Score=56.24 Aligned_cols=67 Identities=24% Similarity=0.366 Sum_probs=52.6
Q ss_pred HHHHHHhhccCCCeeEEEEeeCCCC--CcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEEcCCHH
Q 015716 116 EAEVSALFSIYGTIKDLQILRGSQQ--TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEK 185 (402)
Q Consensus 116 ~~~l~~~f~~~G~v~~~~i~~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~a~~~~ 185 (402)
++++++.+++||+|..|.|..++.. ...--.||+|+..++|.+|+-.|||++ ++|+. +...|.+..+
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRy-FGGr~--v~A~Fyn~ek 368 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRY-FGGRV--VSACFYNLEK 368 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCce-eccee--eeheeccHHh
Confidence 4668899999999999999876521 112348999999999999999999987 88874 6666665543
No 175
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.80 E-value=0.00094 Score=58.24 Aligned_cols=71 Identities=13% Similarity=0.273 Sum_probs=58.9
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-C--------CCcc----eEEEEEeCCHHHHHHHHHHHcCCc
Q 015716 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-Q--------QTSK----GCAFLKYETKEQALAALEAINGKH 167 (402)
Q Consensus 101 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~--------~~~~----g~afV~f~~~~~A~~A~~~l~g~~ 167 (402)
....||+++||+.++...||++|+.||+|-.|.+-... . |.++ .-|.|+|.+...|.++...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 35689999999999999999999999999999886543 1 2222 237899999999999999999988
Q ss_pred ccCCC
Q 015716 168 KMEGS 172 (402)
Q Consensus 168 ~~~g~ 172 (402)
++|+
T Consensus 153 -Iggk 156 (278)
T KOG3152|consen 153 -IGGK 156 (278)
T ss_pred -cCCC
Confidence 6664
No 176
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.64 E-value=0.0074 Score=58.80 Aligned_cols=83 Identities=16% Similarity=0.260 Sum_probs=66.9
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhcc-CCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEE
Q 015716 100 RLEHKLFIGMLPKNVSEAEVSALFSI-YGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (402)
Q Consensus 100 ~~~~~l~v~nlp~~~t~~~l~~~f~~-~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v 178 (402)
...+.|+|.||-.-.|.-+|+.++.+ +|.|++. ||-. -+..|||.|.+.++|.+...+|||..+-.+.-..|.+
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-WmDk----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~a 516 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WMDK----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIA 516 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHH-HHHH----hhcceeEecccHHHHHHHHHHHhccccCCCCCceeEe
Confidence 34778999999999999999999984 5667776 4421 2567999999999999999999999876666677888
Q ss_pred EEcCCHHHH
Q 015716 179 KWADTEKER 187 (402)
Q Consensus 179 ~~a~~~~~~ 187 (402)
.|.......
T Consensus 517 df~~~deld 525 (718)
T KOG2416|consen 517 DFVRADELD 525 (718)
T ss_pred eecchhHHH
Confidence 888655433
No 177
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.51 E-value=0.0089 Score=52.36 Aligned_cols=62 Identities=18% Similarity=0.258 Sum_probs=55.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q 015716 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACH 77 (402)
Q Consensus 15 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~ 77 (402)
..|+|.||...+..+.|.+-|+.||+|+...++-|-. ++..+-++|+|...-.|.+|.+.+.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r-~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDR-GKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeeccc-ccccccchhhhhcchhHHHHHHHhc
Confidence 6799999999999999999999999999888777754 7888899999999999999998874
No 178
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.36 E-value=0.017 Score=39.50 Aligned_cols=55 Identities=20% Similarity=0.284 Sum_probs=44.7
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccC---CCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHH
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFSIY---GTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAI 163 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~~~---G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l 163 (402)
...|+|+++. +++.++|+.+|..| .....|+++.|. -|-|.|.+.+.|.+|+.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC------cEEEEECCHHHHHHHHHcC
Confidence 3579999985 48888999999998 236678888774 3789999999999999764
No 179
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.35 E-value=0.0019 Score=56.46 Aligned_cols=62 Identities=26% Similarity=0.479 Sum_probs=48.8
Q ss_pred HHHHHhhc-cCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEEc
Q 015716 117 AEVSALFS-IYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181 (402)
Q Consensus 117 ~~l~~~f~-~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~a 181 (402)
|+|...|+ +||+|+++.|..+-.-.-+|-++|.|...++|++|++.||+.. +.|+ +|...+.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw-~~G~--pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRW-YNGR--PIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCcc-ccCC--cceeeec
Confidence 45556665 8999999987765444447889999999999999999999987 7776 4665554
No 180
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.22 E-value=0.019 Score=41.37 Aligned_cols=55 Identities=22% Similarity=0.471 Sum_probs=41.0
Q ss_pred ceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcC
Q 015716 103 HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 165 (402)
Q Consensus 103 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 165 (402)
...++. .|..|...||.++|+.||.|. |.++.| .-|||...+.+.|..|+..+.-
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT------TEEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC------CcEEEEeecHHHHHHHHHHhcc
Confidence 344554 999999999999999999765 556654 2599999999999999988763
No 181
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.20 E-value=0.021 Score=43.40 Aligned_cols=77 Identities=27% Similarity=0.319 Sum_probs=49.3
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCCeeEEE-EeeC-------CCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCc
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ-ILRG-------SQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSS 173 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~-i~~~-------~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~ 173 (402)
++.|.|-+.|.. ....|.+.|++||.|.+.. +.++ +........-|+|+++.+|++||. -||.. ++|.-
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i-~~g~~ 82 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTI-FSGSL 82 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEE-ETTCE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeE-EcCcE
Confidence 456888889888 4556788999999988764 1111 111124678999999999999997 58865 77652
Q ss_pred eeEEEEEcC
Q 015716 174 VPLVVKWAD 182 (402)
Q Consensus 174 ~~l~v~~a~ 182 (402)
-+-|.+.+
T Consensus 83 -mvGV~~~~ 90 (100)
T PF05172_consen 83 -MVGVKPCD 90 (100)
T ss_dssp -EEEEEE-H
T ss_pred -EEEEEEcH
Confidence 35566664
No 182
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.16 E-value=0.0039 Score=60.66 Aligned_cols=79 Identities=24% Similarity=0.297 Sum_probs=61.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHh-cCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCC
Q 015716 10 SSEERVKLFVGQVPKHMTEAQLLAMFKE-FALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (402)
Q Consensus 10 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~-~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~ 88 (402)
..+.++.|+|.||=.-+|.-+|+.++.+ +|.|++. .+|+ -+..|||.|.+.++|...+.+|||-.+-.+.-+.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmDk----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMDK----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHH--HHHH----hhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 4556788999999999999999999995 6677777 3443 2347999999999999999999998866654455
Q ss_pred cccccc
Q 015716 89 LQVKYA 94 (402)
Q Consensus 89 ~~~~~~ 94 (402)
|.+.+.
T Consensus 514 L~adf~ 519 (718)
T KOG2416|consen 514 LIADFV 519 (718)
T ss_pred eEeeec
Confidence 555443
No 183
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.03 E-value=0.0037 Score=54.74 Aligned_cols=61 Identities=16% Similarity=0.378 Sum_probs=46.0
Q ss_pred HHHHHHHH-hcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCccccc
Q 015716 29 AQLLAMFK-EFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKY 93 (402)
Q Consensus 29 ~~L~~~f~-~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~~~~ 93 (402)
+||...|+ +||+|++++|..+.. -.-+|-+||.|..+|+|++|++.||+. .+.| ++|...+
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~-~hl~GNVYV~f~~Ee~ae~a~~~lnnR-w~~G--~pi~ae~ 144 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLG-DHLVGNVYVKFRSEEDAEAALEDLNNR-WYNG--RPIHAEL 144 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccc-hhhhhhhhhhcccHHHHHHHHHHHcCc-cccC--Ccceeee
Confidence 44555555 899999998766542 456788999999999999999999654 4777 6665443
No 184
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.50 E-value=0.012 Score=50.10 Aligned_cols=74 Identities=8% Similarity=0.097 Sum_probs=45.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHh-cCCe---eEEEEeeC-CCCC-CcccEEEEEeCCHHHHHHHHHHhcCCCCCCC
Q 015716 11 SEERVKLFVGQVPKHMTEAQLLAMFKE-FALV---DEVNIIKD-KTTR-ASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (402)
Q Consensus 11 ~~~~~~l~V~nLp~~~t~~~L~~~f~~-~G~v---~~v~~~~~-~~t~-~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g 84 (402)
.....+|.||+||+++||+++.+.+.. ++.. ..+.-... ...+ ..-.-|||.|.+.+++...+..+++..+...
T Consensus 4 ~~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~ 83 (176)
T PF03467_consen 4 EKEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDS 83 (176)
T ss_dssp -----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-T
T ss_pred cccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECC
Confidence 456679999999999999999997776 6654 23331222 2112 1223599999999999999999877665443
No 185
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.39 E-value=0.18 Score=39.16 Aligned_cols=65 Identities=22% Similarity=0.234 Sum_probs=47.3
Q ss_pred CeEEEcCCC-CCCCHHHHHHHHHhcC-CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCC
Q 015716 15 VKLFVGQVP-KHMTEAQLLAMFKEFA-LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKT 81 (402)
Q Consensus 15 ~~l~V~nLp-~~~t~~~L~~~f~~~G-~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~ 81 (402)
+.|.|=-.| .-++.++|..+.+.+- .|..++|++|.. .++=.+.++|.+.++|.+..+.+||+.+
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~F 79 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPF 79 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCcc
Confidence 444444444 4555566766666654 588899999863 3555699999999999999999987764
No 186
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.27 E-value=0.055 Score=52.57 Aligned_cols=62 Identities=15% Similarity=0.273 Sum_probs=52.3
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHHh--cCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q 015716 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKE--FALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACH 77 (402)
Q Consensus 9 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~--~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~ 77 (402)
+...+.|.|+++.||..+-+|+++.||+. |-++.+|..-.+.. =||+|++.+||+.|.+.|.
T Consensus 170 rp~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-------WyITfesd~DAQqAykylr 233 (684)
T KOG2591|consen 170 RPNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-------WYITFESDTDAQQAYKYLR 233 (684)
T ss_pred ccCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-------eEEEeecchhHHHHHHHHH
Confidence 34556788999999999999999999975 78899998866542 5999999999999988764
No 187
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.19 E-value=0.073 Score=42.49 Aligned_cols=63 Identities=17% Similarity=0.220 Sum_probs=48.4
Q ss_pred cCCCCCCeEEEcCCCCCCC----HHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcC
Q 015716 9 KSSEERVKLFVGQVPKHMT----EAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHN 78 (402)
Q Consensus 9 ~~~~~~~~l~V~nLp~~~t----~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~ 78 (402)
..+++..+|.|+=|..++. -..+...++.||+|.+|.+.-.. -|.|.|.+..+|-+|+.+++.
T Consensus 81 ~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrq-------savVvF~d~~SAC~Av~Af~s 147 (166)
T PF15023_consen 81 TKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQ-------SAVVVFKDITSACKAVSAFQS 147 (166)
T ss_pred CCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCc-------eEEEEehhhHHHHHHHHhhcC
Confidence 3567788899987766654 33445566789999999875433 599999999999999999865
No 188
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.10 E-value=0.063 Score=47.96 Aligned_cols=56 Identities=20% Similarity=0.153 Sum_probs=44.0
Q ss_pred HHHHHHHHHhcCCeeEEEEeeCCCCCCcc-cEEEEEeCCHHHHHHHHHHhcCCCCCCC
Q 015716 28 EAQLLAMFKEFALVDEVNIIKDKTTRASR-GCCFVICPSRQEADKAVNACHNKKTLPG 84 (402)
Q Consensus 28 ~~~L~~~f~~~G~v~~v~~~~~~~t~~~~-g~afV~F~~~~~a~~ai~~l~~~~~~~g 84 (402)
++++++-+++||.|..|.|..+....... --.||+|...++|.+|+-.||+.. +.|
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRy-FGG 356 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRY-FGG 356 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCce-ecc
Confidence 45788999999999999998875432222 237999999999999999996554 666
No 189
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.15 E-value=0.11 Score=44.23 Aligned_cols=83 Identities=23% Similarity=0.282 Sum_probs=53.3
Q ss_pred cceEEEcCCCCCCcHHHHHHhhcc-CCCe---eEEEEeeC--CCC-CcceEEEEEeCCHHHHHHHHHHHcCCcccCCCc-
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFSI-YGTI---KDLQILRG--SQQ-TSKGCAFLKYETKEQALAALEAINGKHKMEGSS- 173 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~~-~G~v---~~~~i~~~--~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~- 173 (402)
..+|.|++||+.+|++++.+.++. ++.. ..+.-... ... ....-|||.|.+.+++..-.+.++|..+.+.+.
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~ 86 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGN 86 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCC
Confidence 568999999999999999998887 6655 33331122 111 123569999999999999999999977665443
Q ss_pred -eeEEEEEcCCH
Q 015716 174 -VPLVVKWADTE 184 (402)
Q Consensus 174 -~~l~v~~a~~~ 184 (402)
....|.+|--.
T Consensus 87 ~~~~~VE~Apyq 98 (176)
T PF03467_consen 87 EYPAVVEFAPYQ 98 (176)
T ss_dssp EEEEEEEE-SS-
T ss_pred CcceeEEEcchh
Confidence 34577777553
No 190
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.02 E-value=0.17 Score=40.41 Aligned_cols=70 Identities=19% Similarity=0.371 Sum_probs=50.1
Q ss_pred cceEEEcCCCCCC----cHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEE
Q 015716 102 EHKLFIGMLPKNV----SEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLV 177 (402)
Q Consensus 102 ~~~l~v~nlp~~~----t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~ 177 (402)
-.+|.|+=|...+ +...+...++.||.|.+|...- +.-|.|.|++..+|.+|+.+++.. ..|. -+.
T Consensus 86 MsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG------rqsavVvF~d~~SAC~Av~Af~s~--~pgt--m~q 155 (166)
T PF15023_consen 86 MSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG------RQSAVVVFKDITSACKAVSAFQSR--APGT--MFQ 155 (166)
T ss_pred ceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC------CceEEEEehhhHHHHHHHHhhcCC--CCCc--eEE
Confidence 4567776555443 2333455668899999997763 456999999999999999998874 3444 367
Q ss_pred EEEc
Q 015716 178 VKWA 181 (402)
Q Consensus 178 v~~a 181 (402)
+.|-
T Consensus 156 CsWq 159 (166)
T PF15023_consen 156 CSWQ 159 (166)
T ss_pred eecc
Confidence 7664
No 191
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.98 E-value=0.19 Score=45.33 Aligned_cols=62 Identities=19% Similarity=0.183 Sum_probs=48.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCC
Q 015716 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (402)
Q Consensus 14 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g 84 (402)
..=|-|-++|+.-. .-|..+|++||.|++...-.+ | -+-+|.|.+..+|++||.+ +.+++.|
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~n---g---NwMhirYssr~~A~KALsk--ng~ii~g 258 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPSN---G---NWMHIRYSSRTHAQKALSK--NGTIIDG 258 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecCCC---C---ceEEEEecchhHHHHhhhh--cCeeecc
Confidence 56677888888744 466778999999987655422 2 2899999999999999988 6776665
No 192
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=93.73 E-value=0.71 Score=35.81 Aligned_cols=64 Identities=17% Similarity=0.230 Sum_probs=49.3
Q ss_pred eEEEcCCCCCCcHHHHHHhhccCC-CeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcc
Q 015716 104 KLFIGMLPKNVSEAEVSALFSIYG-TIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 168 (402)
Q Consensus 104 ~l~v~nlp~~~t~~~l~~~f~~~G-~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 168 (402)
.+.+...|.-++-++|..+.+.+- .|..++|++|... ++-.++++|.+.++|.+-.+..||+.+
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~p-nrymVLikF~~~~~Ad~Fy~~fNGk~F 79 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTP-NRYMVLIKFRDQESADEFYEEFNGKPF 79 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCC-ceEEEEEEECCHHHHHHHHHHhCCCcc
Confidence 444555556666677777777765 5778899987543 577899999999999999999999984
No 193
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=93.71 E-value=0.17 Score=41.02 Aligned_cols=52 Identities=21% Similarity=0.482 Sum_probs=40.3
Q ss_pred HHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEE
Q 015716 118 EVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (402)
Q Consensus 118 ~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v 178 (402)
+|.+.|+.||++.-+++..+ .-+|+|.+-++|-+|+. ++|.. +.|+.++|+.
T Consensus 52 ~ll~~~~~~GevvLvRfv~~-------~mwVTF~dg~sALaals-~dg~~-v~g~~l~i~L 103 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD-------TMWVTFRDGQSALAALS-LDGIQ-VNGRTLKIRL 103 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT-------CEEEEESSCHHHHHHHH-GCCSE-ETTEEEEEEE
T ss_pred HHHHHHHhCCceEEEEEeCC-------eEEEEECccHHHHHHHc-cCCcE-ECCEEEEEEe
Confidence 57788899999888887754 47899999999999996 89988 6776544433
No 194
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=93.64 E-value=0.38 Score=46.98 Aligned_cols=58 Identities=14% Similarity=0.235 Sum_probs=48.5
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhcc--CCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHc
Q 015716 101 LEHKLFIGMLPKNVSEAEVSALFSI--YGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAIN 164 (402)
Q Consensus 101 ~~~~l~v~nlp~~~t~~~l~~~f~~--~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 164 (402)
..|.+.++-||.....|+++.+|+. |-++++|.+-.+.. =||+|++.+||+.|.+.|.
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n------WyITfesd~DAQqAykylr 233 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN------WYITFESDTDAQQAYKYLR 233 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc------eEEEeecchhHHHHHHHHH
Confidence 3578999999999999999999975 77899998866422 4899999999999976553
No 195
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=92.97 E-value=0.058 Score=39.82 Aligned_cols=66 Identities=9% Similarity=0.117 Sum_probs=41.3
Q ss_pred EEEEeCCHHHHHHHHHHhcCCCCCCCCCCCccccccC--------cccccccceEEEcCCCCCCcHHHHHHhhc
Q 015716 59 CFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYAD--------GELERLEHKLFIGMLPKNVSEAEVSALFS 124 (402)
Q Consensus 59 afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~~~~~~--------~~~~~~~~~l~v~nlp~~~t~~~l~~~f~ 124 (402)
|.|+|.+++-|++.++.-.....+.+....+.++... -......++|.+.|||..+++++|++..+
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 6899999999999987632222222211222222111 11122378999999999999999987654
No 196
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=92.44 E-value=0.33 Score=39.38 Aligned_cols=72 Identities=18% Similarity=0.276 Sum_probs=46.9
Q ss_pred CCCCCeEEEcCCC------CCCCH---HHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCC
Q 015716 11 SEERVKLFVGQVP------KHMTE---AQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKT 81 (402)
Q Consensus 11 ~~~~~~l~V~nLp------~~~t~---~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~ 81 (402)
.++..||.|.=+. ...++ ++|.+.|..||.|.-+|++.+ .-+|+|.+-++|.+|+.. ++.+
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals~-dg~~- 93 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALSL-DGIQ- 93 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHHG-CCSE-
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHcc-CCcE-
Confidence 3466777776555 12332 377888899999888887765 379999999999999985 3444
Q ss_pred CCCCCCCcccccc
Q 015716 82 LPGASSPLQVKYA 94 (402)
Q Consensus 82 ~~g~~~~~~~~~~ 94 (402)
+.| +.++++..
T Consensus 94 v~g--~~l~i~LK 104 (146)
T PF08952_consen 94 VNG--RTLKIRLK 104 (146)
T ss_dssp ETT--EEEEEEE-
T ss_pred ECC--EEEEEEeC
Confidence 666 55555543
No 197
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=92.15 E-value=3.8 Score=37.14 Aligned_cols=150 Identities=15% Similarity=0.241 Sum_probs=91.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC-------CCCcccEEEEEeCCHHHHHHHHH----HhcCCC
Q 015716 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKT-------TRASRGCCFVICPSRQEADKAVN----ACHNKK 80 (402)
Q Consensus 12 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~-------t~~~~g~afV~F~~~~~a~~ai~----~l~~~~ 80 (402)
=..+.|...|+..+++--.+...|-+||+|++|.++.+.. ..+......+.|-+.+.|..... .|...+
T Consensus 13 YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK 92 (309)
T PF10567_consen 13 YRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFK 92 (309)
T ss_pred ceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHH
Confidence 3567889999999999999999999999999999998761 12334578999999988775432 221111
Q ss_pred -CCCCCCCCccccccC-----c---ccc-------------------cccceEEEcCCCCCCcHHH-HHH---hhccCC-
Q 015716 81 -TLPGASSPLQVKYAD-----G---ELE-------------------RLEHKLFIGMLPKNVSEAE-VSA---LFSIYG- 127 (402)
Q Consensus 81 -~~~g~~~~~~~~~~~-----~---~~~-------------------~~~~~l~v~nlp~~~t~~~-l~~---~f~~~G- 127 (402)
.+ +...+.+.+.. . ..+ ...|.|.|.-- ..+.+++ +.+ ++..-+
T Consensus 93 ~~L--~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~-~~~~~~dl~~~kL~fL~~~~n 169 (309)
T PF10567_consen 93 TKL--KSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFK-DPVDKDDLIEKKLPFLKNSNN 169 (309)
T ss_pred Hhc--CCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEec-CccchhHHHHHhhhhhccCCC
Confidence 01 11222222211 0 000 00334444322 3343333 222 222223
Q ss_pred ---CeeEEEEeeCC---CCCcceEEEEEeCCHHHHHHHHHHHc
Q 015716 128 ---TIKDLQILRGS---QQTSKGCAFLKYETKEQALAALEAIN 164 (402)
Q Consensus 128 ---~v~~~~i~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~ 164 (402)
-+++|+++... ....+.||.++|-+...|.+.++-+.
T Consensus 170 ~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 170 KRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred ceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 37778887542 34557899999999999999987775
No 198
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=91.69 E-value=0.7 Score=44.13 Aligned_cols=68 Identities=21% Similarity=0.324 Sum_probs=58.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcC-CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCC
Q 015716 12 EERVKLFVGQVPKHMTEAQLLAMFKEFA-LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKT 81 (402)
Q Consensus 12 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G-~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~ 81 (402)
.+++.|.|-.+|..++--||..|...+- .|.++++++|.. .++=...|.|.+.++|....+.+||+.+
T Consensus 72 ~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~F 140 (493)
T KOG0804|consen 72 SSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQF 140 (493)
T ss_pred CCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcC
Confidence 3489999999999999999999998764 699999999764 2444599999999999999999988764
No 199
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=91.31 E-value=0.098 Score=47.97 Aligned_cols=79 Identities=19% Similarity=0.390 Sum_probs=58.0
Q ss_pred ceEEEcCCCCCCcHHHHH---HhhccCCCeeEEEEeeCCC--C--CcceEEEEEeCCHHHHHHHHHHHcCCcccCCCcee
Q 015716 103 HKLFIGMLPKNVSEAEVS---ALFSIYGTIKDLQILRGSQ--Q--TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVP 175 (402)
Q Consensus 103 ~~l~v~nlp~~~t~~~l~---~~f~~~G~v~~~~i~~~~~--~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~ 175 (402)
+-+||.+|+..+..+.+. +.|.+||.|.+|.+.+++. . ..-.-++|+|+..|+|..||...+|.. ++|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~-~dg~~-- 154 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFV-DDGRA-- 154 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHH-hhhhh--
Confidence 457888998877666554 6888999999998887652 1 112338999999999999999999965 77764
Q ss_pred EEEEEcCCH
Q 015716 176 LVVKWADTE 184 (402)
Q Consensus 176 l~v~~a~~~ 184 (402)
|+..+..++
T Consensus 155 lka~~gttk 163 (327)
T KOG2068|consen 155 LKASLGTTK 163 (327)
T ss_pred hHHhhCCCc
Confidence 455555443
No 200
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=90.98 E-value=0.15 Score=46.70 Aligned_cols=77 Identities=13% Similarity=0.338 Sum_probs=54.9
Q ss_pred CCeEEEcCCCCCCCHHHHH---HHHHhcCCeeEEEEeeCCC--C--CCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCC
Q 015716 14 RVKLFVGQVPKHMTEAQLL---AMFKEFALVDEVNIIKDKT--T--RASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (402)
Q Consensus 14 ~~~l~V~nLp~~~t~~~L~---~~f~~~G~v~~v~~~~~~~--t--~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~ 86 (402)
..-+||-+|+....++++. ++|.+||.|..|.+.++.. . +-+. -++|+|...|+|..||...++.. +.|
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~-s~yITy~~~eda~rci~~v~g~~-~dg-- 152 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTC-SVYITYEEEEDADRCIDDVDGFV-DDG-- 152 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCC-cccccccchHhhhhHHHHhhhHH-hhh--
Confidence 3567888898776666553 4899999999998888652 1 1111 28999999999999999886654 555
Q ss_pred CCcccccc
Q 015716 87 SPLQVKYA 94 (402)
Q Consensus 87 ~~~~~~~~ 94 (402)
+.++..+.
T Consensus 153 ~~lka~~g 160 (327)
T KOG2068|consen 153 RALKASLG 160 (327)
T ss_pred hhhHHhhC
Confidence 44444443
No 201
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=90.22 E-value=0.19 Score=51.44 Aligned_cols=74 Identities=26% Similarity=0.362 Sum_probs=58.0
Q ss_pred EEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEEcCCH
Q 015716 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 184 (402)
Q Consensus 105 l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~a~~~ 184 (402)
.++.|.+-..+-..|..+|++||.|.+++..++ -..|.|.|.+.+.|..|+++++|+.+.- ...+.+|.+|+.-
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~-----~N~alvs~~s~~sai~a~dAl~gkevs~-~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRD-----LNMALVSFSSVESAILALDALQGKEVSV-TGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheeccc-----ccchhhhhHHHHHHHHhhhhhcCCcccc-cCCceeEEecccc
Confidence 344444455667779999999999999998887 4579999999999999999999998532 2235788887654
No 202
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=89.66 E-value=0.22 Score=50.99 Aligned_cols=74 Identities=19% Similarity=0.245 Sum_probs=58.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCcccccc
Q 015716 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYA 94 (402)
Q Consensus 15 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~~~~~ 94 (402)
.+..+.|.+-+.+..-|..+|.+||.|.+++.+++.. .|.|+|.+.|.|..|+++|+++.+.. -.-+.+|..+
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~-~g~Ps~V~~a 371 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSV-TGAPSRVSFA 371 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccc-cCCceeEEec
Confidence 3455667777889999999999999999999999875 79999999999999999998876432 2244444444
Q ss_pred C
Q 015716 95 D 95 (402)
Q Consensus 95 ~ 95 (402)
+
T Consensus 372 k 372 (1007)
T KOG4574|consen 372 K 372 (1007)
T ss_pred c
Confidence 3
No 203
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=89.14 E-value=1.4 Score=30.62 Aligned_cols=48 Identities=17% Similarity=0.308 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCC
Q 015716 25 HMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKT 81 (402)
Q Consensus 25 ~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~ 81 (402)
.++-++++..+.+|+- .+|..|+. || ||.|.+.++|++|.+..++..+
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d~t-----Gf-YIvF~~~~Ea~rC~~~~~~~~~ 58 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDDRT-----GF-YIVFNDSKEAERCFRAEDGTLF 58 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEecCC-----EE-EEEECChHHHHHHHHhcCCCEE
Confidence 5788999999999975 34445553 44 8999999999999998866553
No 204
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=88.93 E-value=1.1 Score=42.85 Aligned_cols=66 Identities=20% Similarity=0.325 Sum_probs=57.6
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCC-CeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcc
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFSIYG-TIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 168 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~~~G-~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 168 (402)
...|+|-.+|..++-.||-.++..+- .|..++|+||... .+-.++|+|.+.++|..-.+.+||+.+
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p-nrymvLIkFr~q~da~~Fy~efNGk~F 140 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP-NRYMVLIKFRDQADADTFYEEFNGKQF 140 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC-ceEEEEEEeccchhHHHHHHHcCCCcC
Confidence 67899999999999999999998765 6999999997533 355699999999999999999999984
No 205
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=87.96 E-value=0.054 Score=53.80 Aligned_cols=60 Identities=13% Similarity=0.078 Sum_probs=51.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCC
Q 015716 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNK 79 (402)
Q Consensus 11 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~ 79 (402)
.++..+|||+||-..+..+-++.+...||.|-+++... |||..|..++...+|+..++..
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~ 96 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTEL 96 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhccc
Confidence 45678999999999999999999999999988876433 8999999999999999887543
No 206
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=86.96 E-value=0.64 Score=46.54 Aligned_cols=45 Identities=22% Similarity=0.160 Sum_probs=39.2
Q ss_pred CCCccEEEecCCCCCCHHHHHHHhhccCcEEEEEEEEeCCCCCcceEEEEEeec
Q 015716 347 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGKYTVDL 400 (402)
Q Consensus 347 ~~~~~lfV~nLp~~~t~~~L~~~F~~fG~v~~~~i~~d~~tg~skG~gFV~f~~ 400 (402)
++.-++||+|+-..+..+-++.+...+|.|.+++.+. |||-.|..
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~ 82 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLK 82 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhh
Confidence 4566899999999999999999999999999887754 89988864
No 207
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=86.58 E-value=1.1 Score=38.38 Aligned_cols=60 Identities=25% Similarity=0.344 Sum_probs=42.0
Q ss_pred cHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHc--CCcccCCCceeEEEEEcC
Q 015716 115 SEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAIN--GKHKMEGSSVPLVVKWAD 182 (402)
Q Consensus 115 t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~--g~~~~~g~~~~l~v~~a~ 182 (402)
..+.|+++|..++.+..+.+++. -+-..|.|.+.++|.+|...|+ +.. +.|.. +++-++.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s-----FrRi~v~f~~~~~A~~~r~~l~~~~~~-~~g~~--l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS-----FRRIRVVFESPESAQRARQLLHWDGTS-FNGKR--LRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT-----TTEEEEE-SSTTHHHHHHHTST--TSE-ETTEE---EEE---
T ss_pred hHHHHHHHHHhcCCceEEEEcCC-----CCEEEEEeCCHHHHHHHHHHhcccccc-cCCCc--eEEEEcc
Confidence 45789999999998888777653 4568999999999999999988 766 55553 6666663
No 208
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=85.71 E-value=2.6 Score=29.32 Aligned_cols=48 Identities=13% Similarity=0.160 Sum_probs=38.0
Q ss_pred CCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcc
Q 015716 113 NVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 168 (402)
Q Consensus 113 ~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 168 (402)
.++-++++..+..|+- .+|..+++| -||.|.+.++|+++.+..+|..+
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d~tG-----fYIvF~~~~Ea~rC~~~~~~~~~ 58 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDDRTG-----FYIVFNDSKEAERCFRAEDGTLF 58 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEecCCE-----EEEEECChHHHHHHHHhcCCCEE
Confidence 5678999999999973 234445433 58999999999999999999874
No 209
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=84.65 E-value=2.4 Score=38.45 Aligned_cols=75 Identities=21% Similarity=0.234 Sum_probs=52.6
Q ss_pred ceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEEcC
Q 015716 103 HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWAD 182 (402)
Q Consensus 103 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~a~ 182 (402)
.-|-|-++|..- -..|..+|++||+|.+..... + -.+-.|+|.+..+|++||. -||+. ++|. +-|-|+.+.
T Consensus 198 ~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~~--n---gNwMhirYssr~~A~KALs-kng~i-i~g~-vmiGVkpCt 268 (350)
T KOG4285|consen 198 TWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTPS--N---GNWMHIRYSSRTHAQKALS-KNGTI-IDGD-VMIGVKPCT 268 (350)
T ss_pred ceEEEeccCccc-hhHHHHHHHhhCeeeeeecCC--C---CceEEEEecchhHHHHhhh-hcCee-eccc-eEEeeeecC
Confidence 345555666543 345788999999998765542 2 3578999999999999997 47754 6765 446677666
Q ss_pred CHHH
Q 015716 183 TEKE 186 (402)
Q Consensus 183 ~~~~ 186 (402)
.+..
T Consensus 269 Dksv 272 (350)
T KOG4285|consen 269 DKSV 272 (350)
T ss_pred CHHH
Confidence 5543
No 210
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=84.31 E-value=0.42 Score=45.79 Aligned_cols=75 Identities=19% Similarity=0.278 Sum_probs=54.8
Q ss_pred CCCeEEEcCCCCCC-CHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCccc
Q 015716 13 ERVKLFVGQVPKHM-TEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 91 (402)
Q Consensus 13 ~~~~l~V~nLp~~~-t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~~ 91 (402)
+.+.|-+.-.|+.. |.++|...|.+||+|.+|.+-.... .|.|+|.+..+|-+|... ++ ..+.+ +.|++
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~------~a~vTF~t~aeag~a~~s-~~-avlnn--r~iKl 440 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSL------HAVVTFKTRAEAGEAYAS-HG-AVLNN--RFIKL 440 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCchh------hheeeeeccccccchhcc-cc-ceecC--ceeEE
Confidence 44556666666664 4589999999999999998866532 599999999999766543 23 34666 77887
Q ss_pred cccCcc
Q 015716 92 KYADGE 97 (402)
Q Consensus 92 ~~~~~~ 97 (402)
.|.++.
T Consensus 441 ~whnps 446 (526)
T KOG2135|consen 441 FWHNPS 446 (526)
T ss_pred EEecCC
Confidence 777654
No 211
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=76.97 E-value=3.5 Score=32.35 Aligned_cols=48 Identities=23% Similarity=0.307 Sum_probs=29.9
Q ss_pred cEEEecCCCC---------CCHHHHHHHhhccCcEEEEEEEEeCCCCCcceEEEEEeecC
Q 015716 351 NLFIYHIPQE---------FGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGKYTVDLD 401 (402)
Q Consensus 351 ~lfV~nLp~~---------~t~~~L~~~F~~fG~v~~~~i~~d~~tg~skG~gFV~f~~~ 401 (402)
.+.|-|++.+ .+.++|++.|+.|..+ +++.+.++. -++|++.|.|.+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~-kv~~l~~~~--gh~g~aiv~F~~~ 66 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPL-KVKPLYGKQ--GHTGFAIVEFNKD 66 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---S-EEEEEEETT--EEEEEEEEE--SS
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCc-eeEECcCCC--CCcEEEEEEECCC
Confidence 4677788654 3668999999999998 488888873 7889999999764
No 212
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=75.66 E-value=1.4 Score=32.52 Aligned_cols=24 Identities=17% Similarity=0.397 Sum_probs=20.6
Q ss_pred CCCccEEEecCCCCCCHHHHHHHh
Q 015716 347 PPGANLFIYHIPQEFGDQELGNAF 370 (402)
Q Consensus 347 ~~~~~lfV~nLp~~~t~~~L~~~F 370 (402)
...++|.|.|||...++++|++..
T Consensus 50 vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 50 VSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred ccCCEEEEeCCCCCCChhhheeeE
Confidence 356789999999999999999764
No 213
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=75.55 E-value=28 Score=36.21 Aligned_cols=17 Identities=6% Similarity=0.243 Sum_probs=7.1
Q ss_pred ccEEEecCCCCCCHHHH
Q 015716 350 ANLFIYHIPQEFGDQEL 366 (402)
Q Consensus 350 ~~lfV~nLp~~~t~~~L 366 (402)
.+.||+-=-..++.++|
T Consensus 642 ~cFWvkv~Edk~en~dl 658 (1102)
T KOG1924|consen 642 NCFWVKVNEDKLENDDL 658 (1102)
T ss_pred cceeeecchhhccchHH
Confidence 34556433333333333
No 214
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=75.23 E-value=5.1 Score=36.34 Aligned_cols=62 Identities=13% Similarity=0.269 Sum_probs=49.3
Q ss_pred cccccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC--------CCCcceEEEEEeCCHHHHHHH
Q 015716 98 LERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS--------QQTSKGCAFLKYETKEQALAA 159 (402)
Q Consensus 98 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~--------~~~~~g~afV~f~~~~~A~~A 159 (402)
-+-..|.|.+.|+..+++-..+-+.|.+||.|++|.++.+. .........+.|-+.+.+-.-
T Consensus 11 D~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdF 80 (309)
T PF10567_consen 11 DEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDF 80 (309)
T ss_pred ccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHH
Confidence 34446789999999999999999999999999999998765 223346688889888876543
No 215
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=73.97 E-value=14 Score=27.10 Aligned_cols=58 Identities=16% Similarity=0.197 Sum_probs=44.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHHh-cC-CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 015716 16 KLFVGQVPKHMTEAQLLAMFKE-FA-LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76 (402)
Q Consensus 16 ~l~V~nLp~~~t~~~L~~~f~~-~G-~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l 76 (402)
.-|+-..+.+++..+|++.+++ || +|.+|+.+..+. + .-=|||.+...++|......+
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~-~--~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK-G--EKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC-C--cEEEEEEeCCCCcHHHHHHhh
Confidence 4556667899999999999998 67 688888877652 1 224999999999888876554
No 216
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=73.41 E-value=7.6 Score=31.80 Aligned_cols=114 Identities=18% Similarity=0.126 Sum_probs=69.3
Q ss_pred CeEEEcCCC--CCCCHHHHHHHHHh-cCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCccc
Q 015716 15 VKLFVGQVP--KHMTEAQLLAMFKE-FALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 91 (402)
Q Consensus 15 ~~l~V~nLp--~~~t~~~L~~~f~~-~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~~ 91 (402)
....|+.+- ...+-..|...+.+ ++....+.+..- ..++..+.|.+.+++.++++. +.-.+.+ ..+.+
T Consensus 16 ~~~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~~--~p~~~~~--~~~~l 86 (153)
T PF14111_consen 16 QLCLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLKG--GPWNFNG--HFLIL 86 (153)
T ss_pred CeEEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEec--ccccccc--cchhh
Confidence 344455552 34567777776665 343333443322 225899999999999999875 3333443 22322
Q ss_pred cccCcc-------cccccceEEEcCCCCC-CcHHHHHHhhccCCCeeEEEEeeC
Q 015716 92 KYADGE-------LERLEHKLFIGMLPKN-VSEAEVSALFSIYGTIKDLQILRG 137 (402)
Q Consensus 92 ~~~~~~-------~~~~~~~l~v~nlp~~-~t~~~l~~~f~~~G~v~~~~i~~~ 137 (402)
..-++. ......-|-|.+||.. ++++.|+.+.+.+|++.+++....
T Consensus 87 ~~W~~~~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 87 QRWSPDFNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred hhhcccccccccceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCC
Confidence 221111 1112334678899966 788889999999999999877543
No 217
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.23 E-value=11 Score=35.72 Aligned_cols=56 Identities=16% Similarity=0.229 Sum_probs=46.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCC-eeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHH
Q 015716 13 ERVKLFVGQVPKHMTEAQLLAMFKEFAL-VDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75 (402)
Q Consensus 13 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~-v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~ 75 (402)
-.+.|=|.++|.....+||...|+.|+. --+|+++-|. .+|-.|.+...|..|+..
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 4577889999999999999999999974 3455666554 699999999999999876
No 218
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=70.46 E-value=3.5 Score=34.48 Aligned_cols=62 Identities=8% Similarity=0.029 Sum_probs=41.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC-CCCcccEEEEEeCCHHHHHHHHHHh
Q 015716 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKT-TRASRGCCFVICPSRQEADKAVNAC 76 (402)
Q Consensus 11 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~-t~~~~g~afV~F~~~~~a~~ai~~l 76 (402)
....+++|.. +.+..-++|.++-+ |++..+.+.+-.. ....+|-.||+|.+.+.|..+++.-
T Consensus 108 ~~~~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~~ 170 (205)
T KOG4213|consen 108 GIKERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDTH 170 (205)
T ss_pred HHHHhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhhh
Confidence 3345667766 33334445555544 7888887755432 1267789999999999999988753
No 219
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.67 E-value=20 Score=35.80 Aligned_cols=80 Identities=20% Similarity=0.275 Sum_probs=59.2
Q ss_pred ccceEEEcCCCCC-CcHHHHHHhhccC----CCeeEEEEeeCCCC-----------C-----------------------
Q 015716 101 LEHKLFIGMLPKN-VSEAEVSALFSIY----GTIKDLQILRGSQQ-----------T----------------------- 141 (402)
Q Consensus 101 ~~~~l~v~nlp~~-~t~~~l~~~f~~~----G~v~~~~i~~~~~~-----------~----------------------- 141 (402)
..++|-|-|+.++ +.-++|.-+|+.| |.|++|.|.....| .
T Consensus 173 ~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~~ 252 (650)
T KOG2318|consen 173 ETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEED 252 (650)
T ss_pred ccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhhh
Confidence 3678999999976 7788898888765 58999988543211 1
Q ss_pred --------------cceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEEc
Q 015716 142 --------------SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181 (402)
Q Consensus 142 --------------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~a 181 (402)
..-||.|+|.+.+.|.+..+.+.|.. +......|.+.|-
T Consensus 253 ~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~E-fEsS~~~~DLRFI 305 (650)
T KOG2318|consen 253 VDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIE-FESSANKLDLRFI 305 (650)
T ss_pred HHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcce-eccccceeeeeec
Confidence 12579999999999999999999988 4444344555553
No 220
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=69.51 E-value=15 Score=26.93 Aligned_cols=57 Identities=7% Similarity=0.154 Sum_probs=42.8
Q ss_pred eEEEcCCCCCCcHHHHHHhhcc-CC-CeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHH
Q 015716 104 KLFIGMLPKNVSEAEVSALFSI-YG-TIKDLQILRGSQQTSKGCAFLKYETKEQALAALEA 162 (402)
Q Consensus 104 ~l~v~nlp~~~t~~~l~~~f~~-~G-~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~ 162 (402)
+-|+-.++...+..+|++.++. || .|.+|....-+.+ .--|||++...++|.+....
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~--~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKG--EKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC--cEEEEEEeCCCCcHHHHHHh
Confidence 3455556788999999999987 67 6888887765533 34599999999888877554
No 221
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=69.10 E-value=7.8 Score=33.15 Aligned_cols=45 Identities=20% Similarity=0.189 Sum_probs=34.9
Q ss_pred CHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q 015716 27 TEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACH 77 (402)
Q Consensus 27 t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~ 77 (402)
..+.|+++|..++.+.....++.- +-..|.|.+.++|.+|...|+
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~ 52 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLH 52 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhc
Confidence 457899999999998887776653 258999999999999999987
No 222
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=67.20 E-value=17 Score=26.10 Aligned_cols=57 Identities=7% Similarity=0.155 Sum_probs=42.4
Q ss_pred eEEEcCCCCCCcHHHHHHhhcc-CC-CeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHH
Q 015716 104 KLFIGMLPKNVSEAEVSALFSI-YG-TIKDLQILRGSQQTSKGCAFLKYETKEQALAALEA 162 (402)
Q Consensus 104 ~l~v~nlp~~~t~~~l~~~f~~-~G-~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~ 162 (402)
+-|+-.++...+..+|++.++. || .|.+|..+.-+.+ .--|||++...+.|...-..
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~--~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRG--EKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC--ceEEEEEECCCCcHHHHHHh
Confidence 3555567888999999999977 66 6888877765533 33599999988888776543
No 223
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=65.76 E-value=21 Score=32.21 Aligned_cols=50 Identities=12% Similarity=0.266 Sum_probs=36.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHH
Q 015716 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQ 67 (402)
Q Consensus 13 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~ 67 (402)
..+.|+++|||.++.-.||+..+.+-|.+ -..|-. .-+.|-||+.|-+..
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~isw----kg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECT-PMSISW----KGHFGKCFLHFGNRK 378 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCC-ceeEee----ecCCcceeEecCCcc
Confidence 45679999999999999999999987642 222222 125567999997653
No 224
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=65.03 E-value=3.6 Score=39.71 Aligned_cols=69 Identities=17% Similarity=0.332 Sum_probs=48.7
Q ss_pred EEcCCCCCC-cHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEEcCC
Q 015716 106 FIGMLPKNV-SEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADT 183 (402)
Q Consensus 106 ~v~nlp~~~-t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~a~~ 183 (402)
-+.-.++.. +.++|...|.+||+|..|.+-.. ---|.|+|.+..+|-+|.. .++.. ++++. |.|.|-++
T Consensus 376 ~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-----~~~a~vTF~t~aeag~a~~-s~~av-lnnr~--iKl~whnp 445 (526)
T KOG2135|consen 376 ALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-----SLHAVVTFKTRAEAGEAYA-SHGAV-LNNRF--IKLFWHNP 445 (526)
T ss_pred hhhccCCCCchHhhhhhhhhhcCccccccccCc-----hhhheeeeeccccccchhc-cccce-ecCce--eEEEEecC
Confidence 333334433 45789999999999999988654 2358999999999977754 45654 67664 66666654
No 225
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=64.94 E-value=13 Score=33.55 Aligned_cols=47 Identities=9% Similarity=0.174 Sum_probs=36.1
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCC-eeEEEEeeCCCCCcceEEEEEeCCH
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFSIYGT-IKDLQILRGSQQTSKGCAFLKYETK 153 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~~~G~-v~~~~i~~~~~~~~~g~afV~f~~~ 153 (402)
..-|+++||+.++.-.||+..+.+-+. ..++.|.- .+|-||+.|.+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg-----~~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKG-----HFGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeeec-----CCcceeEecCCc
Confidence 345999999999999999999988773 34444432 367799999765
No 226
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=63.25 E-value=7.4 Score=34.86 Aligned_cols=49 Identities=20% Similarity=0.295 Sum_probs=34.7
Q ss_pred CCccEEEecCCCC------------CCHHHHHHHhhccCcEEEEEEE-EeC----CCCCcceEEEE
Q 015716 348 PGANLFIYHIPQE------------FGDQELGNAFQAFGRVLSAKVF-VDK----ATGVSKCFGKY 396 (402)
Q Consensus 348 ~~~~lfV~nLp~~------------~t~~~L~~~F~~fG~v~~~~i~-~d~----~tg~skG~gFV 396 (402)
..-+|++.+||.. -+++.|+..|..||.|..|.|+ +|| -||+..|.-|-
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~ 213 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFH 213 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceee
Confidence 3447888777753 3678899999999999999985 343 25665444443
No 227
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=63.20 E-value=9.9 Score=29.82 Aligned_cols=50 Identities=20% Similarity=0.301 Sum_probs=28.7
Q ss_pred eEEEcCCCCC---------CCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHH
Q 015716 16 KLFVGQVPKH---------MTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQE 68 (402)
Q Consensus 16 ~l~V~nLp~~---------~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~ 68 (402)
++.|-|++.. .+.++|++.|..|.++ +++.+.++ .-+.|++.|+|...-.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~-kv~~l~~~--~gh~g~aiv~F~~~w~ 68 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPL-KVKPLYGK--QGHTGFAIVEFNKDWS 68 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---S-EEEEEEET--TEEEEEEEEE--SSHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCc-eeEECcCC--CCCcEEEEEEECCChH
Confidence 4556676543 4567999999999986 57777765 3578999999976543
No 228
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=59.97 E-value=45 Score=23.99 Aligned_cols=58 Identities=14% Similarity=0.175 Sum_probs=44.3
Q ss_pred eEEEcCCCCCCCHHHHHHHHHh-cC-CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 015716 16 KLFVGQVPKHMTEAQLLAMFKE-FA-LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76 (402)
Q Consensus 16 ~l~V~nLp~~~t~~~L~~~f~~-~G-~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l 76 (402)
.-|+-.++.+++..+|++.+++ || +|.+|+.+.-+. ..-=|||++...+.|...-..+
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR---GEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CceEEEEEECCCCcHHHHHHhh
Confidence 4667778899999999999998 67 688888776542 2224999999888888765544
No 229
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=57.54 E-value=52 Score=23.26 Aligned_cols=58 Identities=22% Similarity=0.381 Sum_probs=32.6
Q ss_pred CCCcHHHHHHhhccCC-----CeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEE
Q 015716 112 KNVSEAEVSALFSIYG-----TIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (402)
Q Consensus 112 ~~~t~~~l~~~f~~~G-----~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~ 180 (402)
..++..+|..++...+ .|-.|+|... |+||+-.. +.|..+++.|++.. +.|+. +.|+.
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~-------~S~vev~~-~~a~~v~~~l~~~~-~~gk~--v~ve~ 73 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN-------FSFVEVPE-EVAEKVLEALNGKK-IKGKK--VRVER 73 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS--------EEEEE-T-T-HHHHHHHHTT---SSS------EEE
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee-------EEEEEECH-HHHHHHHHHhcCCC-CCCee--EEEEE
Confidence 3467777777776553 4667777643 78888765 57888999999987 66664 55554
No 230
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=57.39 E-value=43 Score=23.69 Aligned_cols=57 Identities=23% Similarity=0.408 Sum_probs=32.3
Q ss_pred CCCCHHHHHHHHHhcC-----CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCcccc
Q 015716 24 KHMTEAQLLAMFKEFA-----LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVK 92 (402)
Q Consensus 24 ~~~t~~~L~~~f~~~G-----~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~~~ 92 (402)
..++..+|..++..-+ .|-.|+|..+ |.||+-.. +.|+++++.|++.+ +.| +.+.++
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~-~~a~~v~~~l~~~~-~~g--k~v~ve 72 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPE-EVAEKVLEALNGKK-IKG--KKVRVE 72 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-T-T-HHHHHHHHTT---SSS------EE
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECH-HHHHHHHHHhcCCC-CCC--eeEEEE
Confidence 3578889999988764 4555666443 78998854 58889999997666 555 555544
No 231
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=57.02 E-value=23 Score=24.15 Aligned_cols=18 Identities=39% Similarity=0.567 Sum_probs=15.1
Q ss_pred HHHHHhhccCCCeeEEEE
Q 015716 117 AEVSALFSIYGTIKDLQI 134 (402)
Q Consensus 117 ~~l~~~f~~~G~v~~~~i 134 (402)
.+||++|+..|+|.-+.+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 579999999999876655
No 232
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=53.96 E-value=7.3 Score=34.14 Aligned_cols=36 Identities=17% Similarity=0.198 Sum_probs=31.6
Q ss_pred CCCccEEEecCCCCCCHHHHHHHhhccCcEEEEEEE
Q 015716 347 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVF 382 (402)
Q Consensus 347 ~~~~~lfV~nLp~~~t~~~L~~~F~~fG~v~~~~i~ 382 (402)
++..+||+-|+|..+|++.|.++-++.|.+..+...
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y~ 73 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLYN 73 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhheecc
Confidence 467789999999999999999999999988776553
No 233
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.35 E-value=15 Score=36.64 Aligned_cols=42 Identities=21% Similarity=0.367 Sum_probs=32.8
Q ss_pred CCCccEEEecCCC-CCCHHHHHHHhhcc----CcEEEEEEEEeCCCCC
Q 015716 347 PPGANLFIYHIPQ-EFGDQELGNAFQAF----GRVLSAKVFVDKATGV 389 (402)
Q Consensus 347 ~~~~~lfV~nLp~-~~t~~~L~~~F~~f----G~v~~~~i~~d~~tg~ 389 (402)
....+|=|.||.+ .+...+|+-+|+.| |.|++|.|-... .|+
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSe-FGk 218 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSE-FGK 218 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhh-hhH
Confidence 3566899999999 47899999997765 489999997654 444
No 234
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=51.59 E-value=42 Score=30.22 Aligned_cols=35 Identities=20% Similarity=0.419 Sum_probs=28.4
Q ss_pred cceEEEcCCCCC------------CcHHHHHHhhccCCCeeEEEEee
Q 015716 102 EHKLFIGMLPKN------------VSEAEVSALFSIYGTIKDLQILR 136 (402)
Q Consensus 102 ~~~l~v~nlp~~------------~t~~~l~~~f~~~G~v~~~~i~~ 136 (402)
..+|++.+||-. -+++.|+..|+.||.|..|+|+-
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 568999988853 35677999999999999998853
No 235
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=49.08 E-value=7.4 Score=36.88 Aligned_cols=63 Identities=19% Similarity=0.186 Sum_probs=53.2
Q ss_pred CCCCeEEEcCCCCCCCHH--------HHHHHHHh--cCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHH
Q 015716 12 EERVKLFVGQVPKHMTEA--------QLLAMFKE--FALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74 (402)
Q Consensus 12 ~~~~~l~V~nLp~~~t~~--------~L~~~f~~--~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~ 74 (402)
...+.+|+.++....+.+ ++...|.. .+++..++..++.....++|-.|++|...+.|+++..
T Consensus 172 ~~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 172 QMQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hHhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 345678888888777666 99999998 6788899998887667899999999999999999875
No 236
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=43.25 E-value=3.9 Score=40.28 Aligned_cols=66 Identities=11% Similarity=0.086 Sum_probs=46.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcC
Q 015716 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHN 78 (402)
Q Consensus 13 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~ 78 (402)
..|+|||+|++++.+-++|..+++.+--+..+-+-.+...++...+++|.|+---.-..|+.+|++
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~ 295 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNG 295 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhh
Confidence 468899999999999999999999886655555444333345556788999755444444444443
No 237
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=43.02 E-value=64 Score=26.32 Aligned_cols=56 Identities=9% Similarity=0.211 Sum_probs=40.2
Q ss_pred eEEEcCCCCCCcHHHHHHhhcc-CC-CeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHH
Q 015716 104 KLFIGMLPKNVSEAEVSALFSI-YG-TIKDLQILRGSQQTSKGCAFLKYETKEQALAALE 161 (402)
Q Consensus 104 ~l~v~nlp~~~t~~~l~~~f~~-~G-~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~ 161 (402)
+-|+-.++...+..+|++.++. |+ .|..|..+.-+.|. --|||++....+|.....
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~--KKA~V~L~~~~~aidva~ 140 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGL--KKAYIRLSPDVDALDVAN 140 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCc--eEEEEEECCCCcHHHHHH
Confidence 4556667788999999999987 66 57888776655543 348999987777654433
No 238
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=41.93 E-value=95 Score=25.34 Aligned_cols=57 Identities=14% Similarity=0.137 Sum_probs=40.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHHh-cC-CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHH
Q 015716 16 KLFVGQVPKHMTEAQLLAMFKE-FA-LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75 (402)
Q Consensus 16 ~l~V~nLp~~~t~~~L~~~f~~-~G-~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~ 75 (402)
.-|+--++..++..+|++.+++ |+ .|..|..+.... |. -=|||.+....+|......
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~-g~--KKA~V~L~~~~~aidva~k 141 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPD-GL--KKAYIRLSPDVDALDVANK 141 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCC-Cc--eEEEEEECCCCcHHHHHHh
Confidence 4556667889999999999997 66 678887766543 21 1499999877776554443
No 239
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=40.59 E-value=21 Score=21.40 Aligned_cols=17 Identities=12% Similarity=0.354 Sum_probs=10.5
Q ss_pred CCCCHHHHHHHhhccCc
Q 015716 359 QEFGDQELGNAFQAFGR 375 (402)
Q Consensus 359 ~~~t~~~L~~~F~~fG~ 375 (402)
.++++++|++.|.+.++
T Consensus 19 ~Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIKK 35 (36)
T ss_dssp S---HHHHHHHHHCS--
T ss_pred ccCCHHHHHHHHHHhcc
Confidence 47899999999987653
No 240
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=40.17 E-value=36 Score=32.26 Aligned_cols=74 Identities=22% Similarity=0.292 Sum_probs=51.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCC-eeEEEEee-CCCCC-CcccEEEEEeCCHHHHHHHHHHhcCCCCCCC
Q 015716 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFAL-VDEVNIIK-DKTTR-ASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (402)
Q Consensus 11 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~-v~~v~~~~-~~~t~-~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g 84 (402)
....++|.|++||+..++.+|.+-...+-. |....... +.... .-.+.+||.|...++.....+.+++..++..
T Consensus 4 ~~~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld~ 80 (376)
T KOG1295|consen 4 KEAKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLDN 80 (376)
T ss_pred cccceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEecC
Confidence 345678999999999999999988877653 33333332 21111 1245699999999998888887766655544
No 241
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=39.76 E-value=53 Score=30.76 Aligned_cols=56 Identities=16% Similarity=0.160 Sum_probs=35.7
Q ss_pred EEEEeCCHHHHHHHHHHhcCCCCCCCCCCCccccccCcccccccceEEEcCCCCCCcHHHHHHhhc
Q 015716 59 CFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFS 124 (402)
Q Consensus 59 afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~ 124 (402)
|||+|++..+|+.|++.+..... ....+..+- ..+-|+=.||..+..+..+|..+.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~-----~~~~v~~AP-----eP~DI~W~NL~~~~~~r~~R~~~~ 56 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP-----NSWRVSPAP-----EPDDIIWENLSISSKQRFLRRIIV 56 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC-----CCceEeeCC-----CcccccccccCCChHHHHHHHHHH
Confidence 79999999999999997644331 233333322 123466677766666666665544
No 242
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.04 E-value=58 Score=31.07 Aligned_cols=55 Identities=20% Similarity=0.248 Sum_probs=45.3
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCC-eeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHH
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFSIYGT-IKDLQILRGSQQTSKGCAFLKYETKEQALAALEA 162 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~~~G~-v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~ 162 (402)
...|=|.++|.....+||...|+.|+. --+|.|+.| -.+|-.|.+...|..|+..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd------thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD------THALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec------ceeEEeecchHHHHHHhhc
Confidence 457889999999999999999999974 455666654 3699999999999999864
No 243
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=36.73 E-value=38 Score=28.65 Aligned_cols=74 Identities=19% Similarity=0.221 Sum_probs=48.8
Q ss_pred ceEEEcCCCCCCc-----HHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEE
Q 015716 103 HKLFIGMLPKNVS-----EAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLV 177 (402)
Q Consensus 103 ~~l~v~nlp~~~t-----~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~ 177 (402)
..+++.++...+. .....++|..|.+..-..+++ +.+...|-|.+.+.|..|..++++.. +.|.+ .+.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr-----sfrrvRi~f~~p~~a~~a~i~~~~~~-f~~~~-~~k 83 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR-----SFRRVRINFSNPEAAADARIKLHSTS-FNGKN-ELK 83 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH-----hhceeEEeccChhHHHHHHHHhhhcc-cCCCc-eEE
Confidence 3455555554332 233456777776666555554 36678899999999999999999988 55553 355
Q ss_pred EEEcCC
Q 015716 178 VKWADT 183 (402)
Q Consensus 178 v~~a~~ 183 (402)
.-+++.
T Consensus 84 ~yfaQ~ 89 (193)
T KOG4019|consen 84 LYFAQP 89 (193)
T ss_pred EEEccC
Confidence 555554
No 244
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=36.49 E-value=6.2 Score=38.95 Aligned_cols=66 Identities=17% Similarity=0.172 Sum_probs=51.9
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCc
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKH 167 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 167 (402)
.+.+|+.|+++.++-.+|..+|+.+-.+..+.+..+. ......+++|+|+.--....|+.+||+..
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~ir 297 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIR 297 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcc
Confidence 6789999999999999999999998777777665543 33345678999987777777777777765
No 245
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=32.86 E-value=57 Score=27.54 Aligned_cols=58 Identities=21% Similarity=0.284 Sum_probs=39.2
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCC--CcceEEEEEeCCHHHHHHHHHHH
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQ--TSKGCAFLKYETKEQALAALEAI 163 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~--~~~g~afV~f~~~~~A~~A~~~l 163 (402)
.+++|.. +.+...++|.++-+ |++..+...+-..+ ..+|-.||+|.+.+.|.+.++.-
T Consensus 111 ~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~~ 170 (205)
T KOG4213|consen 111 ERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDTH 170 (205)
T ss_pred Hhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhhh
Confidence 5677776 33333444555544 78888777654333 55789999999999999877643
No 246
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=32.36 E-value=45 Score=29.45 Aligned_cols=36 Identities=31% Similarity=0.398 Sum_probs=30.9
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEE
Q 015716 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEV 44 (402)
Q Consensus 9 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v 44 (402)
....+..+||+-|+|..++++.|.++.+++|.+..+
T Consensus 35 s~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 35 SNSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred cccccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 455677899999999999999999999999966554
No 247
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=31.94 E-value=15 Score=34.38 Aligned_cols=49 Identities=12% Similarity=0.247 Sum_probs=39.6
Q ss_pred CHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCC
Q 015716 27 TEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNK 79 (402)
Q Consensus 27 t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~ 79 (402)
+...+.+++.+.|.|..-.+.+.- +-|.|||-...+++++++++.|...
T Consensus 274 ~~p~iF~~i~~~G~v~~~EM~rtF----NmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 274 PPPPIFKWLQKAGNVEREEMYRTF----NMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CCcHHHHHHHHhcCCCHHHHHHHh----cCccceEEEEcHHHHHHHHHHHHhc
Confidence 357889999999988877666654 3468999999999999999998643
No 248
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=31.09 E-value=2.2e+02 Score=27.42 Aligned_cols=40 Identities=18% Similarity=0.309 Sum_probs=32.0
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHHhc----CCeeEEEEeeCC
Q 015716 11 SEERVKLFVGQVPKH-MTEAQLLAMFKEF----ALVDEVNIIKDK 50 (402)
Q Consensus 11 ~~~~~~l~V~nLp~~-~t~~~L~~~f~~~----G~v~~v~~~~~~ 50 (402)
.....+|-|-||.|+ +...+|..+|+.| |+|..|.|....
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypse 187 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSE 187 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhh
Confidence 446678999999886 7778999999886 688888887654
No 249
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=30.34 E-value=1.3e+02 Score=20.54 Aligned_cols=18 Identities=22% Similarity=0.383 Sum_probs=14.9
Q ss_pred HHHHHHhhccCcEEEEEE
Q 015716 364 QELGNAFQAFGRVLSAKV 381 (402)
Q Consensus 364 ~~L~~~F~~fG~v~~~~i 381 (402)
++||+.|+..|+|.-+-|
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 689999999999965544
No 250
>PRK15464 cold shock-like protein CspH; Provisional
Probab=29.94 E-value=26 Score=24.66 Aligned_cols=10 Identities=10% Similarity=-0.227 Sum_probs=7.9
Q ss_pred CcceEEEEEe
Q 015716 389 VSKCFGKYTV 398 (402)
Q Consensus 389 ~skG~gFV~f 398 (402)
..||||||+=
T Consensus 14 ~~KGfGFI~~ 23 (70)
T PRK15464 14 RKSGKGFIIP 23 (70)
T ss_pred CCCCeEEEcc
Confidence 5689999964
No 251
>PRK12280 rplW 50S ribosomal protein L23; Reviewed
Probab=29.39 E-value=1.9e+02 Score=24.01 Aligned_cols=35 Identities=17% Similarity=0.236 Sum_probs=29.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHHh-cC-CeeEEEEeeCC
Q 015716 16 KLFVGQVPKHMTEAQLLAMFKE-FA-LVDEVNIIKDK 50 (402)
Q Consensus 16 ~l~V~nLp~~~t~~~L~~~f~~-~G-~v~~v~~~~~~ 50 (402)
..|+-.++.+++..+|++.++. || .|..|+.+.-+
T Consensus 23 N~ytF~V~~~anK~eIK~AVE~iF~VkV~~VNT~~~~ 59 (158)
T PRK12280 23 NVYTFKVDRRANKIEIKKAVEFIFKVKVLKVNIFNVD 59 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEecC
Confidence 5688888999999999999998 67 68888877643
No 252
>TIGR02381 cspD cold shock domain protein CspD. This model represents what appears to be a phylogenetically distinct clade, containing E. coli CspD and related proteobacterial proteins within the larger family of cold shock domain proteins described by pfam model pfam00313. The gene symbol cspD may have been used idependently for other subfamilies of cold shock domain proteins, such as for B. subtilis CspD. These proteins typically are shorter than 70 amino acids. In E. coli, CspD is a stress response protein induced in stationary phase. This homodimer binds single-stranded DNA and appears to inhibit DNA replication.
Probab=29.35 E-value=30 Score=24.07 Aligned_cols=12 Identities=25% Similarity=0.293 Sum_probs=8.9
Q ss_pred CCcceEEEEEee
Q 015716 388 GVSKCFGKYTVD 399 (402)
Q Consensus 388 g~skG~gFV~f~ 399 (402)
+..||||||+=+
T Consensus 10 ~~~kGfGFI~~~ 21 (68)
T TIGR02381 10 NNAKGFGFICPE 21 (68)
T ss_pred eCCCCeEEEecC
Confidence 356899999744
No 253
>PRK09507 cspE cold shock protein CspE; Reviewed
Probab=28.33 E-value=30 Score=24.21 Aligned_cols=10 Identities=50% Similarity=0.394 Sum_probs=7.9
Q ss_pred CcceEEEEEe
Q 015716 389 VSKCFGKYTV 398 (402)
Q Consensus 389 ~skG~gFV~f 398 (402)
..||||||+=
T Consensus 13 ~~kGyGFI~~ 22 (69)
T PRK09507 13 ESKGFGFITP 22 (69)
T ss_pred CCCCcEEEec
Confidence 4589999974
No 254
>CHL00030 rpl23 ribosomal protein L23
Probab=28.29 E-value=2.2e+02 Score=21.33 Aligned_cols=35 Identities=17% Similarity=0.103 Sum_probs=28.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHHh-cC-CeeEEEEeeCC
Q 015716 16 KLFVGQVPKHMTEAQLLAMFKE-FA-LVDEVNIIKDK 50 (402)
Q Consensus 16 ~l~V~nLp~~~t~~~L~~~f~~-~G-~v~~v~~~~~~ 50 (402)
..|+-.++.+++..+|++.++. || .|..|..+.-+
T Consensus 20 n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~~~ 56 (93)
T CHL00030 20 NQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRLP 56 (93)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEcC
Confidence 5667778899999999999998 67 68888876653
No 255
>PRK15463 cold shock-like protein CspF; Provisional
Probab=27.41 E-value=33 Score=24.12 Aligned_cols=10 Identities=20% Similarity=-0.127 Sum_probs=7.9
Q ss_pred CcceEEEEEe
Q 015716 389 VSKCFGKYTV 398 (402)
Q Consensus 389 ~skG~gFV~f 398 (402)
..||||||+=
T Consensus 14 ~~kGfGFI~~ 23 (70)
T PRK15463 14 GKSGKGLITP 23 (70)
T ss_pred CCCceEEEec
Confidence 4589999964
No 256
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=27.18 E-value=2.2e+02 Score=28.97 Aligned_cols=79 Identities=15% Similarity=0.272 Sum_probs=53.2
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCc-----------cccccCccc--------ccccceEEEcCCCCCCcHHH
Q 015716 58 CCFVICPSRQEADKAVNACHNKKTLPGASSPL-----------QVKYADGEL--------ERLEHKLFIGMLPKNVSEAE 118 (402)
Q Consensus 58 ~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~-----------~~~~~~~~~--------~~~~~~l~v~nlp~~~t~~~ 118 (402)
-||+++.++..-+--.+.||-..++.|...-+ .+++++.+. ......+|+.+|+.++.++.
T Consensus 238 ~C~iT~Tn~~TH~iIr~Nl~rSpmysG~Ieg~GPRYCPSIEDKIvrF~dK~~HqIFlEPEGl~~~evY~nGlSTSlP~dV 317 (621)
T COG0445 238 PCYITYTNEKTHEIIRDNLHRSPMYSGEIEGVGPRYCPSIEDKIVRFADKERHQIFLEPEGLDTDEVYPNGLSTSLPEDV 317 (621)
T ss_pred ceeeecCChHHHHHHHHhhhhCchhcccccccCCCCCCCHHHhhccCCCCccceEEecCCCCCCceEecCcccccCCHHH
Confidence 59999999988777777777666555522211 112222111 11256899999999998887
Q ss_pred HHHhhccCCCeeEEEEee
Q 015716 119 VSALFSIYGTIKDLQILR 136 (402)
Q Consensus 119 l~~~f~~~G~v~~~~i~~ 136 (402)
=.++....-..+.+.|++
T Consensus 318 Q~~~irsipGlEna~i~r 335 (621)
T COG0445 318 QEQIIRSIPGLENAEILR 335 (621)
T ss_pred HHHHHHhCcccccceeec
Confidence 777777777788888876
No 257
>PRK10943 cold shock-like protein CspC; Provisional
Probab=26.80 E-value=32 Score=24.04 Aligned_cols=10 Identities=50% Similarity=0.394 Sum_probs=7.9
Q ss_pred CcceEEEEEe
Q 015716 389 VSKCFGKYTV 398 (402)
Q Consensus 389 ~skG~gFV~f 398 (402)
..||||||+=
T Consensus 13 ~~kGfGFI~~ 22 (69)
T PRK10943 13 ESKGFGFITP 22 (69)
T ss_pred CCCCcEEEec
Confidence 4589999963
No 258
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=26.52 E-value=75 Score=21.84 Aligned_cols=32 Identities=31% Similarity=0.482 Sum_probs=23.5
Q ss_pred HHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEE
Q 015716 28 EAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFV 61 (402)
Q Consensus 28 ~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV 61 (402)
+.+|..+|-+-..|.++.+...| +-.+|-|||
T Consensus 32 e~eler~fl~~P~v~e~~l~EKK--ri~~G~gyV 63 (64)
T PF13046_consen 32 EVELERHFLPLPEVKEVALYEKK--RIRKGAGYV 63 (64)
T ss_pred HHHhhhhccCCCCceEEEEEEEE--eeeCCceeE
Confidence 55778888888899999988776 344556665
No 259
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.13 E-value=3.4e+02 Score=22.24 Aligned_cols=57 Identities=14% Similarity=0.249 Sum_probs=41.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhc---CCeeEEEEeeCCCC---------CCccc-EEEEEeCCHHH
Q 015716 12 EERVKLFVGQVPKHMTEAQLLAMFKEF---ALVDEVNIIKDKTT---------RASRG-CCFVICPSRQE 68 (402)
Q Consensus 12 ~~~~~l~V~nLp~~~t~~~L~~~f~~~---G~v~~v~~~~~~~t---------~~~~g-~afV~F~~~~~ 68 (402)
.+..+|++.-+...+++++.++..++= +++.+|.+-+.+.. ...+. |-+|.|++-..
T Consensus 85 kd~~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~~ 154 (161)
T COG5353 85 KDDGKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGKE 154 (161)
T ss_pred CCCCeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccchh
Confidence 345799999999999999999998864 56777776554321 22334 78899987654
No 260
>PRK04204 RNA 3'-terminal-phosphate cyclase; Provisional
Probab=25.37 E-value=4.1e+02 Score=25.31 Aligned_cols=119 Identities=14% Similarity=0.197 Sum_probs=65.5
Q ss_pred CeEEEc---CCCCCCCHHHHHH----HHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 015716 15 VKLFVG---QVPKHMTEAQLLA----MFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (402)
Q Consensus 15 ~~l~V~---nLp~~~t~~~L~~----~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~ 87 (402)
.+|-++ |.+++-+-|.++. ++++||--.++++.+.... .+|=|-|.|.-.-...++++.. .
T Consensus 114 ~~l~l~GgT~~~~sPsvDy~~~v~lP~l~~~G~~~~l~i~rRG~y--P~GGGeV~~~i~p~~l~pi~l~------e---- 181 (343)
T PRK04204 114 SRVTITGGTDVPWAPPIDYIRRVTLPLLRRMGIEAEIELLRRGFY--PAGGGEVALEVEPSKLRPLELL------E---- 181 (343)
T ss_pred eEEEEEcccCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEEeCCcc--CCCCeEEEEEEccCCccceeec------c----
Confidence 345544 3455556666655 4577897778888776432 3445666664322111111111 0
Q ss_pred CccccccCcccccccceEEEcCCCCCCcHHHHHHh-----hccCCCeeEEEEeeCCCCCcceEEEEEeCC
Q 015716 88 PLQVKYADGELERLEHKLFIGMLPKNVSEAEVSAL-----FSIYGTIKDLQILRGSQQTSKGCAFLKYET 152 (402)
Q Consensus 88 ~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~-----f~~~G~v~~~~i~~~~~~~~~g~afV~f~~ 152 (402)
..+..+.....++.++|..+.+.++... +..+..-.++.+.....+.+.|++.+.+..
T Consensus 182 -------~G~i~~irg~~~~~~l~~~ia~R~~~~a~~~~~l~~~~~~~~i~~~~~~~~~s~G~gi~L~ae 244 (343)
T PRK04204 182 -------RGELLRIRGISHVANLPEHVAERQAKAAAELLALSLGLIEIEINVEELSRGLGPGSGIVLWAE 244 (343)
T ss_pred -------CCCcEEEEEEEEecCCCHHHHHHHHHHHhhhhhhhccCCCceeEEeeccCCCCCceEEEEEEE
Confidence 0111222346899999999888776653 334433334444444467778888877653
No 261
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=25.31 E-value=2.4e+02 Score=19.67 Aligned_cols=50 Identities=14% Similarity=0.211 Sum_probs=30.7
Q ss_pred HHHHHHhhccCC-CeeEEEEeeCCCCCcceEEEEEeC-CHHHHHHHHHHHcC
Q 015716 116 EAEVSALFSIYG-TIKDLQILRGSQQTSKGCAFLKYE-TKEQALAALEAING 165 (402)
Q Consensus 116 ~~~l~~~f~~~G-~v~~~~i~~~~~~~~~g~afV~f~-~~~~A~~A~~~l~g 165 (402)
--++.+.|+.+| .+..|.-..-+.....-.-||+++ ..+..++|++.|..
T Consensus 14 L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~ 65 (74)
T cd04904 14 LARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEVDRGDLDQLISSLRR 65 (74)
T ss_pred HHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEcChHHHHHHHHHHHH
Confidence 456778888887 455554433333333345667776 55566778887765
No 262
>COG1278 CspC Cold shock proteins [Transcription]
Probab=25.08 E-value=30 Score=24.12 Aligned_cols=12 Identities=33% Similarity=0.451 Sum_probs=9.2
Q ss_pred CCcceEEEEEee
Q 015716 388 GVSKCFGKYTVD 399 (402)
Q Consensus 388 g~skG~gFV~f~ 399 (402)
+..||||||+=+
T Consensus 10 n~~KGfGFI~p~ 21 (67)
T COG1278 10 NATKGFGFITPE 21 (67)
T ss_pred eCCCcceEcCCC
Confidence 467899998744
No 263
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=24.26 E-value=2.6e+02 Score=19.65 Aligned_cols=43 Identities=14% Similarity=0.235 Sum_probs=30.2
Q ss_pred HHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 015716 29 AQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76 (402)
Q Consensus 29 ~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l 76 (402)
+++++.+.++| +...++.-.. .-++.|+-+.+.+.++++.+.+
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG----~G~~v~~l~~~~~~~~~v~~~l 79 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSG----GGPTVFALCKDEDDAERVAEAL 79 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTS----SSSEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCC----CCCeEEEEECCHHHHHHHHHHH
Confidence 46777888899 5555553321 1247888888999999988876
No 264
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=24.21 E-value=1.3e+02 Score=22.09 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=20.3
Q ss_pred cEEEEEEEEeCCCCCcceEEEEEeec
Q 015716 375 RVLSAKVFVDKATGVSKCFGKYTVDL 400 (402)
Q Consensus 375 ~v~~~~i~~d~~tg~skG~gFV~f~~ 400 (402)
.|.+|+|-.=...|+-||||=|+|++
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 47788886655469999999999986
No 265
>PRK10354 RNA chaperone/anti-terminator; Provisional
Probab=23.98 E-value=39 Score=23.71 Aligned_cols=10 Identities=40% Similarity=0.404 Sum_probs=7.7
Q ss_pred CcceEEEEEe
Q 015716 389 VSKCFGKYTV 398 (402)
Q Consensus 389 ~skG~gFV~f 398 (402)
..||||||+=
T Consensus 14 ~~kGfGFI~~ 23 (70)
T PRK10354 14 ADKGFGFITP 23 (70)
T ss_pred CCCCcEEEec
Confidence 4589999973
No 266
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=23.76 E-value=1.6e+02 Score=21.89 Aligned_cols=35 Identities=26% Similarity=0.376 Sum_probs=27.9
Q ss_pred eEEEcCCCCCCCHHHHHHHHHh-cC-CeeEEEEeeCC
Q 015716 16 KLFVGQVPKHMTEAQLLAMFKE-FA-LVDEVNIIKDK 50 (402)
Q Consensus 16 ~l~V~nLp~~~t~~~L~~~f~~-~G-~v~~v~~~~~~ 50 (402)
..|+-.++..++..||++.+++ || +|.+|+.+.-.
T Consensus 21 n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~ 57 (92)
T PRK05738 21 NKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVK 57 (92)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEeC
Confidence 4666678899999999999998 67 68888776543
No 267
>PRK09890 cold shock protein CspG; Provisional
Probab=23.76 E-value=39 Score=23.70 Aligned_cols=10 Identities=40% Similarity=0.404 Sum_probs=7.8
Q ss_pred CcceEEEEEe
Q 015716 389 VSKCFGKYTV 398 (402)
Q Consensus 389 ~skG~gFV~f 398 (402)
..||||||+=
T Consensus 14 ~~kGfGFI~~ 23 (70)
T PRK09890 14 ADKGFGFITP 23 (70)
T ss_pred CCCCcEEEec
Confidence 4589999964
No 268
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=23.58 E-value=82 Score=29.46 Aligned_cols=33 Identities=24% Similarity=0.312 Sum_probs=23.7
Q ss_pred EEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEEcCC
Q 015716 146 AFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADT 183 (402)
Q Consensus 146 afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~a~~ 183 (402)
|||+|++..+|+.|.+.+..... + .+.+..|-+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~---~--~~~v~~APe 33 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP---N--SWRVSPAPE 33 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC---C--CceEeeCCC
Confidence 79999999999999987665431 2 345655543
No 269
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=23.08 E-value=1.1e+02 Score=29.27 Aligned_cols=72 Identities=10% Similarity=0.202 Sum_probs=50.0
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCC-CeeEEEEeeCCCC---CcceEEEEEeCCHHHHHHHHHHHcCCcccCCCc
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFSIYG-TIKDLQILRGSQQ---TSKGCAFLKYETKEQALAALEAINGKHKMEGSS 173 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~~~G-~v~~~~i~~~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~ 173 (402)
...+.|.+||...++++|.+....+- .+....+.....+ .-.+.++|.|...++...-.+.++|..+++...
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld~Kg 82 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLDNKG 82 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEecCCC
Confidence 45789999999999999998888864 2444444322111 124779999999999777777777766555443
No 270
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=22.87 E-value=2.9e+02 Score=19.71 Aligned_cols=57 Identities=12% Similarity=0.190 Sum_probs=40.5
Q ss_pred EEEcCCCCCCCHHHHHHHHHh-------cCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHH
Q 015716 17 LFVGQVPKHMTEAQLLAMFKE-------FALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75 (402)
Q Consensus 17 l~V~nLp~~~t~~~L~~~f~~-------~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~ 75 (402)
|..++||..+|.++|.+.-.+ +..|.-++...+.+ ..+-||+.+=.|+|...++-+.
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d--~~k~~Cly~Ap~~eaV~~~~~~ 66 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSED--DGKIFCLYEAPDEEAVREHARR 66 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecC--CCeEEEEEECCCHHHHHHHHHH
Confidence 567889999999999876654 33455555444432 2356899888999998888776
No 271
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=22.10 E-value=1.6e+02 Score=25.37 Aligned_cols=62 Identities=19% Similarity=0.192 Sum_probs=37.3
Q ss_pred cHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEE
Q 015716 115 SEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (402)
Q Consensus 115 t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~ 179 (402)
+.++.+++.+.++.-. +.|..| |...|-+.+...+.++|.+|++.+-....++.....|.|+
T Consensus 25 ~~~~A~~~l~~~~~p~-~ViKad--Gla~GKGV~i~~~~~eA~~~l~~~~~~~~fg~~~~~vvIE 86 (194)
T PF01071_consen 25 DYEEALEYLEEQGYPY-VVIKAD--GLAAGKGVVIADDREEALEALREIFVDRKFGDAGSKVVIE 86 (194)
T ss_dssp SHHHHHHHHHHHSSSE-EEEEES--SSCTTTSEEEESSHHHHHHHHHHHHTSSTTCCCGSSEEEE
T ss_pred CHHHHHHHHHhcCCCc-eEEccC--CCCCCCEEEEeCCHHHHHHHHHHhccccccCCCCCcEEEE
Confidence 5667777777766433 333333 4444455667799999999998775433344333345554
No 272
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=21.83 E-value=87 Score=18.81 Aligned_cols=18 Identities=11% Similarity=0.202 Sum_probs=15.2
Q ss_pred CCCHHHHHHHHHhcCCee
Q 015716 25 HMTEAQLLAMFKEFALVD 42 (402)
Q Consensus 25 ~~t~~~L~~~f~~~G~v~ 42 (402)
.+++++|++++..+|-+.
T Consensus 3 tWs~~~L~~wL~~~gi~~ 20 (38)
T PF10281_consen 3 TWSDSDLKSWLKSHGIPV 20 (38)
T ss_pred CCCHHHHHHHHHHcCCCC
Confidence 578999999999998644
No 273
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=21.31 E-value=47 Score=31.74 Aligned_cols=60 Identities=10% Similarity=0.163 Sum_probs=48.6
Q ss_pred cceEEEcCCCCCCcHH--------HHHHhhcc--CCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHH
Q 015716 102 EHKLFIGMLPKNVSEA--------EVSALFSI--YGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALE 161 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~--------~l~~~f~~--~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~ 161 (402)
.+.+|+.+.......+ ++...|.. .+.+..++..++- +..++|-.|++|...+.|++...
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 5678888888665544 89999998 6677888887776 67778999999999999999873
No 274
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=21.25 E-value=92 Score=29.84 Aligned_cols=45 Identities=20% Similarity=0.468 Sum_probs=32.8
Q ss_pred CCCCccEEEecCCCC-CCHHHHHHHhhcc----CcEEEEEEEEeCCCCCcc
Q 015716 346 GPPGANLFIYHIPQE-FGDQELGNAFQAF----GRVLSAKVFVDKATGVSK 391 (402)
Q Consensus 346 ~~~~~~lfV~nLp~~-~t~~~L~~~F~~f----G~v~~~~i~~d~~tg~sk 391 (402)
|....+|-|-||+++ +...+|+-+|+.| |.|..|.|-... .|+.|
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypse-fGkeR 192 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSE-FGKER 192 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhh-hhHHH
Confidence 445668999999984 7888999998765 567778886543 44443
No 275
>PRK11901 hypothetical protein; Reviewed
Probab=21.15 E-value=1.8e+02 Score=27.22 Aligned_cols=53 Identities=8% Similarity=0.157 Sum_probs=34.7
Q ss_pred CCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEE--EeCCHHHHHHHHHHHcCC
Q 015716 112 KNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFL--KYETKEQALAALEAINGK 166 (402)
Q Consensus 112 ~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV--~f~~~~~A~~A~~~l~g~ 166 (402)
-...++.|..+.++++ +..+.+.+.. +|+ ..|..| .|.+.++|++|+..|-..
T Consensus 252 Aas~~~~L~~f~~~~~-L~~~~VYqT~RnGk-pWYVVvyG~Y~Sr~eAk~Ai~sLPa~ 307 (327)
T PRK11901 252 SASRSDTLNAYAKKQN-LSHYHVYETKRDGK-PWYVLVSGNYASSAEAKRAIATLPAE 307 (327)
T ss_pred cCCCHHHHHHHHHHcC-cCceEEEEEEECCc-eEEEEEecCcCCHHHHHHHHHhCCHH
Confidence 3456788888888776 3444444322 343 345554 489999999999887653
No 276
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=20.58 E-value=3e+02 Score=18.99 Aligned_cols=50 Identities=16% Similarity=0.204 Sum_probs=32.4
Q ss_pred HHHHHHhhccCC-CeeEEEEeeCCCCCcceEEEEEeCC---HHHHHHHHHHHcC
Q 015716 116 EAEVSALFSIYG-TIKDLQILRGSQQTSKGCAFLKYET---KEQALAALEAING 165 (402)
Q Consensus 116 ~~~l~~~f~~~G-~v~~~~i~~~~~~~~~g~afV~f~~---~~~A~~A~~~l~g 165 (402)
-.++-+.|+.+| .+.++.-.........-.-||++.. ....+.+++.|..
T Consensus 13 L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~ 66 (75)
T cd04880 13 LAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKR 66 (75)
T ss_pred HHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 466788899887 5777744433333344567788874 5666677777654
No 277
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=20.31 E-value=2.8e+02 Score=27.93 Aligned_cols=50 Identities=22% Similarity=0.175 Sum_probs=37.9
Q ss_pred CHHHHHHHHH----hcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q 015716 27 TEAQLLAMFK----EFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACH 77 (402)
Q Consensus 27 t~~~L~~~f~----~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~ 77 (402)
+.-+|..+|. .+|-|+++.+...+. ...+...++.|.+.++|.+++..+.
T Consensus 202 ~g~dl~~l~~Gs~GtlGIIt~atlkl~p~-p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 202 PGFDLLALFTGSEGMLGVVTEVTVKLLPK-PPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred CccchHhhhccCCCccEEEEEEEEEEEcC-CcceEEEEEECCCHHHHHHHHHHHH
Confidence 3457777775 578899988877654 3445677899999999999988763
No 278
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=20.04 E-value=1.1e+02 Score=21.29 Aligned_cols=44 Identities=11% Similarity=0.214 Sum_probs=32.7
Q ss_pred HHHHHHHHhcC-CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHH
Q 015716 29 AQLLAMFKEFA-LVDEVNIIKDKTTRASRGCCFVICPSRQEADKA 72 (402)
Q Consensus 29 ~~L~~~f~~~G-~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~a 72 (402)
++|++-|...| +|.++.-+..+.++...-.-||+.+...+..++
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i 46 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI 46 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce
Confidence 57888888888 688888887776666667788888766554443
Done!