Query 015716
Match_columns 402
No_of_seqs 287 out of 2630
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 17:26:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015716.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015716hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ghp_A U4/U6 snRNA-associated 100.0 1.3E-42 4.4E-47 322.4 21.6 228 7-401 34-264 (292)
2 3smz_A Protein raver-1, ribonu 100.0 4.7E-42 1.6E-46 317.3 20.6 218 9-401 17-236 (284)
3 3nmr_A Cugbp ELAV-like family 100.0 1.4E-35 4.9E-40 253.6 21.5 170 13-182 2-175 (175)
4 4f02_A Polyadenylate-binding p 100.0 1.6E-35 5.4E-40 261.6 19.3 174 10-190 11-187 (213)
5 1fxl_A Paraneoplastic encephal 100.0 5.1E-34 1.7E-38 241.9 21.1 165 13-181 1-167 (167)
6 1b7f_A Protein (SXL-lethal pro 100.0 6.6E-34 2.3E-38 241.6 19.6 165 13-181 2-168 (168)
7 2qfj_A FBP-interacting repress 100.0 4.1E-33 1.4E-37 246.7 18.9 169 10-184 24-205 (216)
8 1l3k_A Heterogeneous nuclear r 100.0 4E-33 1.4E-37 242.9 18.5 175 7-189 6-188 (196)
9 3md3_A Nuclear and cytoplasmic 100.0 9.7E-33 3.3E-37 233.7 18.8 162 15-183 1-166 (166)
10 2cjk_A Nuclear polyadenylated 100.0 4.3E-33 1.5E-37 236.4 13.6 164 12-184 1-166 (167)
11 3smz_A Protein raver-1, ribonu 100.0 5.4E-31 1.8E-35 243.1 20.8 179 11-195 92-275 (284)
12 3tyt_A Heterogeneous nuclear r 100.0 5.3E-31 1.8E-35 230.4 16.0 160 12-181 2-204 (205)
13 2g4b_A Splicing factor U2AF 65 100.0 2.8E-30 9.5E-35 220.1 16.7 158 12-182 2-172 (172)
14 1fje_B Nucleolin RBD12, protei 100.0 3.3E-31 1.1E-35 226.6 10.1 165 8-184 7-174 (175)
15 3sde_A Paraspeckle component 1 100.0 8.9E-30 3E-34 231.8 18.4 163 8-184 16-179 (261)
16 2adc_A Polypyrimidine tract-bi 100.0 2.7E-29 9.2E-34 224.2 20.4 163 6-183 26-227 (229)
17 3pgw_A U1-A; protein-RNA compl 100.0 1.9E-29 6.5E-34 232.5 19.4 162 9-182 4-281 (282)
18 2yh0_A Splicing factor U2AF 65 100.0 1.5E-29 5.2E-34 220.6 15.6 160 12-184 2-194 (198)
19 4f02_A Polyadenylate-binding p 100.0 1E-28 3.5E-33 217.9 18.6 139 101-401 14-153 (213)
20 2ghp_A U4/U6 snRNA-associated 100.0 2.9E-29 9.9E-34 232.4 14.8 165 12-184 115-291 (292)
21 1qm9_A Polypyrimidine tract-bi 100.0 5.4E-29 1.8E-33 217.2 15.7 156 13-183 2-196 (198)
22 3nmr_A Cugbp ELAV-like family 100.0 5.7E-29 1.9E-33 212.4 15.3 141 102-401 3-146 (175)
23 2qfj_A FBP-interacting repress 100.0 2.8E-28 9.6E-33 215.5 18.9 150 101-401 27-177 (216)
24 1l3k_A Heterogeneous nuclear r 100.0 2.3E-28 7.9E-33 212.7 18.0 146 99-401 10-156 (196)
25 3md3_A Nuclear and cytoplasmic 100.0 5.5E-29 1.9E-33 210.5 13.6 139 103-401 1-139 (166)
26 1fxl_A Paraneoplastic encephal 100.0 3.2E-28 1.1E-32 206.0 17.5 138 102-401 2-140 (167)
27 1b7f_A Protein (SXL-lethal pro 100.0 2.7E-28 9.1E-33 206.9 14.8 138 102-401 3-141 (168)
28 2cjk_A Nuclear polyadenylated 100.0 2.9E-28 9.9E-33 206.5 12.5 136 102-401 3-139 (167)
29 3pgw_A U1-A; protein-RNA compl 99.9 9.5E-26 3.2E-30 207.7 24.9 81 100-185 7-91 (282)
30 2g4b_A Splicing factor U2AF 65 99.9 3.2E-26 1.1E-30 194.8 13.1 132 102-401 4-146 (172)
31 3tyt_A Heterogeneous nuclear r 99.9 4.2E-26 1.5E-30 199.2 13.8 75 102-183 4-79 (205)
32 3sde_A Paraspeckle component 1 99.9 1.6E-25 5.3E-30 203.7 18.0 128 100-401 20-147 (261)
33 2yh0_A Splicing factor U2AF 65 99.9 3.8E-25 1.3E-29 192.6 15.2 152 102-401 4-166 (198)
34 1fje_B Nucleolin RBD12, protei 99.9 6.2E-26 2.1E-30 193.7 4.8 82 99-184 10-91 (175)
35 2adc_A Polypyrimidine tract-bi 99.9 6.8E-23 2.3E-27 182.6 17.9 78 100-184 32-110 (229)
36 1qm9_A Polypyrimidine tract-bi 99.9 5E-23 1.7E-27 179.3 15.4 76 102-184 3-79 (198)
37 2kn4_A Immunoglobulin G-bindin 99.9 1.5E-22 5.2E-27 169.7 11.7 137 43-184 2-150 (158)
38 4f25_A Polyadenylate-binding p 99.9 2.4E-22 8.1E-27 158.9 8.7 102 12-118 3-113 (115)
39 4f25_A Polyadenylate-binding p 99.9 1E-21 3.4E-26 155.3 8.2 81 102-186 5-85 (115)
40 4fxv_A ELAV-like protein 1; RN 99.8 1.1E-20 3.9E-25 144.8 9.9 83 11-96 16-98 (99)
41 2i2y_A Fusion protein consists 99.8 9.3E-20 3.2E-24 151.2 11.1 127 45-184 4-148 (150)
42 2lxi_A RNA-binding protein 10; 99.8 1.6E-20 5.4E-25 141.7 5.1 85 14-100 1-86 (91)
43 3s8s_A Histone-lysine N-methyl 99.8 2E-19 6.7E-24 140.6 9.3 84 11-97 3-86 (110)
44 2dgp_A Bruno-like 4, RNA bindi 99.8 4.7E-19 1.6E-23 137.9 10.6 94 6-99 5-98 (106)
45 4fxv_A ELAV-like protein 1; RN 99.8 5.8E-19 2E-23 135.2 10.5 79 102-183 19-98 (99)
46 2lkz_A RNA-binding protein 5; 99.8 1.2E-19 4E-24 137.6 6.0 84 10-95 5-93 (95)
47 3lqv_A PRE-mRNA branch site pr 99.8 6.5E-19 2.2E-23 139.2 9.2 106 10-128 4-109 (115)
48 2dnh_A Bruno-like 5, RNA bindi 99.8 2.3E-18 7.7E-23 133.7 12.0 92 8-100 9-100 (105)
49 2dnz_A Probable RNA-binding pr 99.8 3.6E-18 1.2E-22 130.0 11.4 86 11-99 2-87 (95)
50 3p5t_L Cleavage and polyadenyl 99.8 9.4E-19 3.2E-23 131.8 8.0 82 15-99 2-85 (90)
51 2cpz_A CUG triplet repeat RNA- 99.8 2E-18 6.7E-23 136.4 10.1 90 7-99 18-107 (115)
52 1p27_B RNA-binding protein 8A; 99.8 2.8E-18 9.7E-23 133.4 10.6 87 8-97 17-103 (106)
53 1x5u_A Splicing factor 3B subu 99.8 2.7E-18 9.4E-23 133.3 10.5 91 6-99 7-97 (105)
54 2dgs_A DAZ-associated protein 99.8 3.7E-18 1.3E-22 131.0 11.0 87 9-99 5-91 (99)
55 2jrs_A RNA-binding protein 39; 99.8 3.2E-18 1.1E-22 133.4 10.7 88 7-97 19-106 (108)
56 2cq0_A Eukaryotic translation 99.8 1.3E-18 4.5E-23 134.6 8.5 92 5-99 6-97 (103)
57 3s8s_A Histone-lysine N-methyl 99.8 5.6E-18 1.9E-22 132.3 12.1 85 102-189 6-91 (110)
58 2dhg_A TRNA selenocysteine ass 99.8 6.8E-18 2.3E-22 130.8 12.2 89 8-99 3-92 (104)
59 3bs9_A Nucleolysin TIA-1 isofo 99.8 2.5E-18 8.4E-23 128.7 8.9 83 12-97 4-86 (87)
60 2dnm_A SRP46 splicing factor; 99.8 2.5E-18 8.5E-23 133.0 9.2 89 7-98 6-94 (103)
61 2cqc_A Arginine/serine-rich sp 99.8 2.4E-18 8.2E-23 131.0 8.9 88 5-95 6-93 (95)
62 2d9p_A Polyadenylate-binding p 99.8 4.3E-18 1.5E-22 131.7 10.4 92 4-100 5-96 (103)
63 3md1_A Nuclear and cytoplasmic 99.8 3.1E-18 1.1E-22 126.9 9.2 81 14-97 1-81 (83)
64 2kxn_B Transformer-2 protein h 99.8 4.3E-18 1.5E-22 137.0 10.8 89 7-98 39-127 (129)
65 2cph_A RNA binding motif prote 99.8 5.8E-18 2E-22 131.9 11.0 91 6-99 7-99 (107)
66 2dgo_A Cytotoxic granule-assoc 99.8 4.3E-18 1.5E-22 134.5 10.3 92 6-100 7-98 (115)
67 1whw_A Hypothetical protein ri 99.8 3.4E-18 1.2E-22 131.2 9.5 87 10-99 4-90 (99)
68 1x4h_A RNA-binding protein 28; 99.7 4.5E-18 1.5E-22 133.4 10.2 91 6-99 7-103 (111)
69 1sjq_A Polypyrimidine tract-bi 99.7 4.8E-18 1.6E-22 130.0 10.0 82 10-99 12-94 (105)
70 1x5s_A Cold-inducible RNA-bind 99.7 5E-18 1.7E-22 131.0 10.3 88 9-99 7-94 (102)
71 2do4_A Squamous cell carcinoma 99.7 5.3E-18 1.8E-22 130.4 10.2 88 8-99 11-98 (100)
72 2la6_A RNA-binding protein FUS 99.7 7.7E-18 2.6E-22 129.2 11.0 85 7-94 6-98 (99)
73 2div_A TRNA selenocysteine ass 99.7 6E-18 2E-22 129.8 10.3 86 9-97 4-94 (99)
74 2hvz_A Splicing factor, argini 99.7 3.2E-18 1.1E-22 131.9 8.6 89 15-111 1-100 (101)
75 2x1f_A MRNA 3'-END-processing 99.7 5.1E-18 1.8E-22 129.4 9.3 83 13-98 1-83 (96)
76 3mdf_A Peptidyl-prolyl CIS-tra 99.7 3.7E-18 1.3E-22 127.1 8.4 81 11-94 4-84 (85)
77 2lea_A Serine/arginine-rich sp 99.7 2E-18 6.8E-23 140.1 7.4 121 58-184 6-127 (135)
78 2lkz_A RNA-binding protein 5; 99.7 2.7E-18 9.3E-23 130.0 7.5 80 102-183 9-94 (95)
79 1x5t_A Splicing factor 3B subu 99.7 3.7E-18 1.3E-22 130.2 8.1 87 11-100 2-89 (96)
80 3ns6_A Eukaryotic translation 99.7 1.6E-18 5.5E-23 133.2 5.9 84 11-96 3-92 (100)
81 1x4e_A RNA binding motif, sing 99.7 3.9E-18 1.3E-22 127.0 7.7 81 11-94 2-82 (85)
82 1oo0_B CG8781-PA, drosophila Y 99.7 5E-18 1.7E-22 132.9 8.7 88 8-98 20-107 (110)
83 2e5h_A Zinc finger CCHC-type a 99.7 4.8E-18 1.6E-22 129.1 8.3 84 8-94 10-93 (94)
84 1s79_A Lupus LA protein; RRM, 99.7 7.1E-18 2.4E-22 130.0 9.2 83 8-95 5-87 (103)
85 2cqb_A Peptidyl-prolyl CIS-tra 99.7 3.2E-18 1.1E-22 132.1 7.2 89 8-99 6-94 (102)
86 2fy1_A RNA-binding motif prote 99.7 1.3E-17 4.3E-22 131.8 10.7 85 10-98 3-87 (116)
87 2cpf_A RNA binding motif prote 99.7 6.2E-18 2.1E-22 129.5 8.3 85 12-99 3-90 (98)
88 2cqd_A RNA-binding region cont 99.7 8.1E-18 2.8E-22 133.1 8.9 88 6-97 9-96 (116)
89 2khc_A Testis-specific RNP-typ 99.7 4.8E-18 1.6E-22 134.8 7.5 84 8-94 34-117 (118)
90 2dnh_A Bruno-like 5, RNA bindi 99.7 2.6E-17 9E-22 127.6 11.6 86 101-186 14-99 (105)
91 2lxi_A RNA-binding protein 10; 99.7 1.9E-18 6.6E-23 130.2 4.7 82 102-185 1-84 (91)
92 1p1t_A Cleavage stimulation fa 99.7 5E-18 1.7E-22 131.5 7.0 87 10-99 4-90 (104)
93 1wi8_A EIF-4B, eukaryotic tran 99.7 9.2E-18 3.2E-22 130.0 8.5 89 6-99 7-96 (104)
94 2m2b_A RNA-binding protein 10; 99.7 4.9E-18 1.7E-22 137.3 7.2 86 9-98 18-109 (131)
95 2cpe_A RNA-binding protein EWS 99.7 1E-17 3.4E-22 131.9 8.7 89 8-99 9-105 (113)
96 1u6f_A Tcubp1, RNA-binding pro 99.7 1.2E-17 4E-22 136.6 9.4 89 9-100 37-125 (139)
97 3s7r_A Heterogeneous nuclear r 99.7 9.3E-18 3.2E-22 125.5 8.1 82 8-93 5-86 (87)
98 2dh8_A DAZ-associated protein 99.7 9.4E-18 3.2E-22 130.2 8.3 89 7-99 9-97 (105)
99 3n9u_C Cleavage and polyadenyl 99.7 9.7E-18 3.3E-22 139.3 8.9 82 13-97 54-137 (156)
100 2dng_A Eukaryotic translation 99.7 1.3E-17 4.5E-22 128.9 9.0 89 6-99 7-95 (103)
101 2dgv_A HnRNP M, heterogeneous 99.7 4.3E-17 1.5E-21 123.2 11.6 85 10-99 4-88 (92)
102 2ywk_A Putative RNA-binding pr 99.7 1.3E-17 4.6E-22 126.8 8.7 84 8-95 10-93 (95)
103 2rs2_A Musashi-1, RNA-binding 99.7 9.1E-18 3.1E-22 131.1 7.6 88 8-99 19-106 (109)
104 2mss_A Protein (musashi1); RNA 99.7 1.1E-17 3.8E-22 121.3 7.5 74 16-93 1-74 (75)
105 3ex7_B RNA-binding protein 8A; 99.7 2.1E-17 7.2E-22 132.7 9.9 89 8-99 16-104 (126)
106 3ulh_A THO complex subunit 4; 99.7 2E-17 6.7E-22 128.9 9.3 84 8-95 23-106 (107)
107 4a8x_A RNA-binding protein wit 99.7 1.1E-17 3.8E-22 125.3 7.4 83 12-97 2-85 (88)
108 2dis_A Unnamed protein product 99.7 2.1E-17 7.2E-22 129.1 9.3 88 10-99 4-94 (109)
109 2cq3_A RNA-binding protein 9; 99.7 4E-17 1.4E-21 126.1 10.5 89 6-99 7-95 (103)
110 1uaw_A Mouse-musashi-1; RNP-ty 99.7 8.2E-18 2.8E-22 122.7 6.2 76 15-94 1-76 (77)
111 2cq1_A PTB-like protein L; RRM 99.7 2.4E-17 8E-22 126.2 8.9 88 4-99 5-93 (101)
112 1x5o_A RNA binding motif, sing 99.7 4.6E-17 1.6E-21 128.3 10.6 86 9-96 20-111 (114)
113 3r27_A HnRNP L, heterogeneous 99.7 2.6E-17 8.8E-22 124.6 8.7 84 6-97 13-97 (100)
114 2cqi_A Nucleolysin TIAR; RNA r 99.7 3.7E-17 1.3E-21 126.4 9.7 87 8-99 9-95 (103)
115 2dgp_A Bruno-like 4, RNA bindi 99.7 3.2E-17 1.1E-21 127.4 9.3 87 99-185 10-97 (106)
116 3ucg_A Polyadenylate-binding p 99.7 2.6E-17 9E-22 123.6 8.5 80 13-96 5-84 (89)
117 2ad9_A Polypyrimidine tract-bi 99.7 3.4E-17 1.2E-21 128.5 9.4 84 8-99 25-109 (119)
118 3bs9_A Nucleolysin TIA-1 isofo 99.7 5.6E-17 1.9E-21 121.2 10.1 80 102-184 6-86 (87)
119 1h2v_Z 20 kDa nuclear CAP bind 99.7 3.8E-17 1.3E-21 136.3 10.2 88 9-99 34-121 (156)
120 2do0_A HnRNP M, heterogeneous 99.7 4.7E-17 1.6E-21 128.2 10.2 86 8-97 9-94 (114)
121 2lea_A Serine/arginine-rich sp 99.7 1.5E-17 5.1E-22 135.0 7.5 91 7-100 40-130 (135)
122 2do4_A Squamous cell carcinoma 99.7 8.5E-17 2.9E-21 123.6 11.0 83 100-185 15-97 (100)
123 2ki2_A SS-DNA binding protein 99.7 1.1E-17 3.6E-22 126.0 5.7 80 15-98 2-81 (90)
124 2j76_E EIF-4B, EIF4B, eukaryot 99.7 1.8E-17 6E-22 127.4 7.1 84 9-97 14-98 (100)
125 2cqg_A TDP-43, TAR DNA-binding 99.7 5.3E-17 1.8E-21 125.5 9.8 88 7-99 8-95 (103)
126 3md1_A Nuclear and cytoplasmic 99.7 8.1E-17 2.8E-21 119.2 10.3 79 103-184 2-81 (83)
127 3ns6_A Eukaryotic translation 99.7 2.5E-17 8.5E-22 126.5 7.6 81 102-185 6-94 (100)
128 1wex_A Hypothetical protein (r 99.7 8E-17 2.7E-21 124.1 10.2 85 6-98 7-92 (104)
129 2wbr_A GW182, gawky, LD47780P; 99.7 2.8E-17 9.6E-22 119.9 7.1 73 13-94 6-78 (89)
130 2ek1_A RNA-binding protein 12; 99.7 1.4E-17 4.9E-22 126.7 5.7 83 10-95 11-93 (95)
131 2cqp_A RNA-binding protein 12; 99.7 1.7E-17 5.9E-22 127.0 6.2 84 10-96 11-94 (98)
132 2kt5_A RNA and export factor-b 99.7 5.7E-17 1.9E-21 129.8 9.5 85 10-98 31-115 (124)
133 2dgx_A KIAA0430 protein; RRM d 99.7 4.4E-17 1.5E-21 124.1 8.3 83 10-98 5-91 (96)
134 1x4f_A Matrin 3; structural ge 99.7 4.1E-17 1.4E-21 126.6 8.2 85 5-97 16-102 (112)
135 3p5t_L Cleavage and polyadenyl 99.7 2.4E-17 8.1E-22 124.1 6.7 81 103-186 2-85 (90)
136 1p1t_A Cleavage stimulation fa 99.7 5.5E-17 1.9E-21 125.6 8.9 89 99-190 5-94 (104)
137 1x4a_A Splicing factor, argini 99.7 1E-16 3.5E-21 125.2 10.3 87 7-99 15-101 (109)
138 2ywk_A Putative RNA-binding pr 99.7 9.3E-17 3.2E-21 122.1 9.8 82 99-183 13-94 (95)
139 2krb_A Eukaryotic translation 99.7 5.1E-17 1.8E-21 119.7 8.1 73 14-91 1-80 (81)
140 2cq4_A RNA binding motif prote 99.7 7.2E-18 2.5E-22 132.9 3.7 83 12-98 23-105 (114)
141 1x4b_A Heterogeneous nuclear r 99.7 1.8E-17 6E-22 131.1 5.8 86 10-99 23-108 (116)
142 1s79_A Lupus LA protein; RRM, 99.7 9.2E-17 3.1E-21 123.7 9.6 79 102-184 11-89 (103)
143 2err_A Ataxin-2-binding protei 99.7 3.9E-17 1.3E-21 127.5 7.6 86 7-97 22-107 (109)
144 3n9u_C Cleavage and polyadenyl 99.7 1.5E-16 5E-21 132.2 11.4 86 101-189 54-142 (156)
145 2kn4_A Immunoglobulin G-bindin 99.7 7.1E-17 2.4E-21 135.0 9.5 87 10-99 66-152 (158)
146 2dnz_A Probable RNA-binding pr 99.7 1.8E-16 6.2E-21 120.5 10.9 80 102-184 5-85 (95)
147 1wg5_A Heterogeneous nuclear r 99.7 7.6E-17 2.6E-21 124.7 8.8 84 8-96 9-93 (104)
148 1whw_A Hypothetical protein ri 99.7 8.8E-17 3E-21 123.3 9.1 83 101-186 7-90 (99)
149 2d9p_A Polyadenylate-binding p 99.7 2.1E-16 7.2E-21 122.1 11.2 82 100-185 13-94 (103)
150 3r27_A HnRNP L, heterogeneous 99.7 1.1E-16 3.7E-21 121.2 9.3 83 95-184 14-97 (100)
151 3mdf_A Peptidyl-prolyl CIS-tra 99.7 1.1E-16 3.7E-21 119.1 9.1 79 101-182 6-85 (85)
152 2x1f_A MRNA 3'-END-processing 99.7 1.2E-16 4E-21 121.8 9.4 83 102-187 2-85 (96)
153 2nlw_A Eukaryotic translation 99.7 4.9E-17 1.7E-21 126.1 7.4 84 8-96 9-99 (105)
154 1x4d_A Matrin 3; structural ge 99.7 3.7E-17 1.3E-21 125.0 6.3 83 7-97 8-92 (102)
155 1rk8_A CG8781-PA, CG8781-PA pr 99.7 8.4E-17 2.9E-21 135.4 9.1 123 61-187 11-155 (165)
156 2dgw_A Probable RNA-binding pr 99.7 8.2E-17 2.8E-21 121.4 8.1 83 9-97 5-87 (91)
157 1wez_A HnRNP H', FTP-3, hetero 99.7 6E-17 2.1E-21 124.6 7.4 82 9-96 10-91 (102)
158 2dgs_A DAZ-associated protein 99.7 3E-16 1E-20 120.3 11.2 82 100-185 8-90 (99)
159 1iqt_A AUF1, heterogeneous nuc 99.7 4.1E-17 1.4E-21 118.3 6.0 74 16-93 1-74 (75)
160 1fj7_A Nucleolin RBD1, protein 99.7 1.7E-17 5.9E-22 127.7 4.1 86 10-100 13-98 (101)
161 2jwn_A Embryonic polyadenylate 99.7 3.1E-17 1E-21 131.4 5.7 83 11-97 33-115 (124)
162 2cq0_A Eukaryotic translation 99.7 1.8E-16 6.2E-21 122.4 9.8 82 100-184 13-95 (103)
163 1p27_B RNA-binding protein 8A; 99.7 2.6E-16 8.8E-21 122.3 10.7 82 100-184 21-103 (106)
164 2cpy_A RNA-binding protein 12; 99.7 2.7E-17 9.3E-22 129.5 5.2 85 8-97 9-94 (114)
165 2jrs_A RNA-binding protein 39; 99.7 4.1E-16 1.4E-20 121.4 11.8 85 97-184 21-106 (108)
166 2cqc_A Arginine/serine-rich sp 99.7 2.4E-16 8.1E-21 119.8 10.1 81 100-183 13-94 (95)
167 2fy1_A RNA-binding motif prote 99.7 1.9E-16 6.6E-21 124.9 9.9 80 102-184 7-86 (116)
168 3lqv_A PRE-mRNA branch site pr 99.7 1.3E-16 4.6E-21 125.8 9.0 79 102-185 8-86 (115)
169 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 9.7E-17 3.3E-21 131.3 8.4 82 9-93 58-139 (140)
170 2hgl_A HNRPF protein, heteroge 99.7 4.3E-17 1.5E-21 131.7 6.1 81 10-95 40-123 (136)
171 2cpz_A CUG triplet repeat RNA- 99.7 2.5E-16 8.6E-21 124.2 10.4 83 100-185 23-106 (115)
172 2dgo_A Cytotoxic granule-assoc 99.7 2.6E-16 8.8E-21 124.2 10.5 83 100-185 13-96 (115)
173 2cpi_A CCR4-NOT transcription 99.7 5.6E-17 1.9E-21 127.1 6.6 87 9-98 10-102 (111)
174 1x5u_A Splicing factor 3B subu 99.7 2.2E-16 7.5E-21 122.4 9.9 83 100-185 13-96 (105)
175 2dnq_A RNA-binding protein 4B; 99.7 3.7E-16 1.3E-20 117.5 10.8 80 9-99 3-82 (90)
176 2a3j_A U1 small nuclear ribonu 99.7 2.3E-16 7.8E-21 126.0 10.2 83 10-98 25-111 (127)
177 2lmi_A GRSF-1, G-rich sequence 99.7 5.9E-17 2E-21 126.0 6.6 84 8-96 5-91 (107)
178 2cq3_A RNA-binding protein 9; 99.7 3.7E-16 1.2E-20 120.7 11.0 83 98-184 11-93 (103)
179 2div_A TRNA selenocysteine ass 99.7 1.9E-16 6.6E-21 121.3 9.3 84 100-184 7-94 (99)
180 2la6_A RNA-binding protein FUS 99.7 4.2E-16 1.4E-20 119.4 11.2 80 100-182 11-99 (99)
181 1wel_A RNA-binding protein 12; 99.7 3.1E-17 1.1E-21 131.2 4.9 83 10-96 21-103 (124)
182 2cph_A RNA binding motif prote 99.7 3.4E-16 1.1E-20 121.8 10.6 84 99-185 12-98 (107)
183 2e5h_A Zinc finger CCHC-type a 99.7 2.6E-16 9E-21 119.3 9.7 80 100-182 14-94 (94)
184 1x5o_A RNA binding motif, sing 99.7 5E-16 1.7E-20 122.3 11.6 84 100-184 23-112 (114)
185 3pgw_S U1-70K; protein-RNA com 99.7 2.8E-17 9.5E-22 159.1 5.3 80 102-184 102-182 (437)
186 1why_A Hypothetical protein ri 99.7 3.4E-16 1.2E-20 119.5 10.3 84 8-98 11-94 (97)
187 2hgl_A HNRPF protein, heteroge 99.7 1.6E-16 5.5E-21 128.4 8.8 82 100-185 42-126 (136)
188 3q2s_C Cleavage and polyadenyl 99.7 9.7E-17 3.3E-21 142.1 8.2 81 13-96 67-149 (229)
189 2do0_A HnRNP M, heterogeneous 99.7 3.9E-16 1.3E-20 122.9 10.8 82 100-184 13-94 (114)
190 3ulh_A THO complex subunit 4; 99.7 3.9E-16 1.3E-20 121.4 10.5 80 100-182 27-106 (107)
191 2la4_A Nuclear and cytoplasmic 99.7 3E-16 1E-20 120.7 9.6 79 9-96 22-100 (101)
192 1x5s_A Cold-inducible RNA-bind 99.7 2.4E-16 8.1E-21 121.5 9.0 81 101-184 11-92 (102)
193 2dnm_A SRP46 splicing factor; 99.7 2.1E-16 7.3E-21 122.0 8.7 82 100-184 11-93 (103)
194 1rk8_A CG8781-PA, CG8781-PA pr 99.7 2E-16 6.8E-21 133.1 9.2 86 10-98 68-153 (165)
195 2db1_A Heterogeneous nuclear r 99.7 5.3E-17 1.8E-21 128.6 5.4 82 9-95 12-96 (118)
196 2cpj_A Non-POU domain-containi 99.7 2.5E-16 8.7E-21 120.7 8.9 85 5-98 6-90 (99)
197 1sjq_A Polypyrimidine tract-bi 99.7 1E-16 3.5E-21 122.6 6.6 77 101-184 15-92 (105)
198 2fc8_A NCL protein; structure 99.7 2E-16 6.8E-21 122.0 8.3 89 5-99 6-94 (102)
199 2cqi_A Nucleolysin TIAR; RNA r 99.7 3.8E-16 1.3E-20 120.6 9.8 83 99-185 12-94 (103)
200 2cqb_A Peptidyl-prolyl CIS-tra 99.7 2E-16 6.7E-21 122.0 8.0 82 101-185 11-93 (102)
201 2dgv_A HnRNP M, heterogeneous 99.7 4.6E-16 1.6E-20 117.5 9.9 80 101-184 7-86 (92)
202 2ytc_A PRE-mRNA-splicing facto 99.7 3.6E-16 1.2E-20 116.2 9.2 80 7-94 5-84 (85)
203 1x4h_A RNA-binding protein 28; 99.7 4.5E-16 1.5E-20 121.9 10.1 83 100-185 13-102 (111)
204 2dhg_A TRNA selenocysteine ass 99.7 3E-16 1E-20 121.4 8.7 82 101-184 8-90 (104)
205 2cpx_A Hypothetical protein FL 99.7 7.5E-17 2.6E-21 127.2 5.3 88 10-100 21-108 (115)
206 2e5j_A Methenyltetrahydrofolat 99.7 5.2E-16 1.8E-20 118.4 9.8 81 9-97 14-94 (97)
207 1oo0_B CG8781-PA, drosophila Y 99.7 3.8E-16 1.3E-20 122.2 9.3 83 99-184 23-106 (110)
208 2kxn_B Transformer-2 protein h 99.6 3E-16 1E-20 126.2 8.8 83 100-185 44-127 (129)
209 1x5t_A Splicing factor 3B subu 99.6 2E-16 6.8E-21 120.5 7.2 81 102-185 5-87 (96)
210 2lcw_A RNA-binding protein FUS 99.5 1.1E-17 3.7E-22 132.3 0.0 88 9-99 2-97 (116)
211 1x4g_A Nucleolysin TIAR; struc 99.6 3.8E-16 1.3E-20 121.9 8.8 82 9-99 20-101 (109)
212 2wbr_A GW182, gawky, LD47780P; 99.6 2.6E-16 8.8E-21 114.8 7.1 73 102-182 7-79 (89)
213 2khc_A Testis-specific RNP-typ 99.6 3.2E-16 1.1E-20 124.2 8.4 81 99-182 37-118 (118)
214 2err_A Ataxin-2-binding protei 99.6 3.3E-16 1.1E-20 122.2 8.2 82 99-184 26-107 (109)
215 3ucg_A Polyadenylate-binding p 99.6 4.2E-16 1.4E-20 116.9 8.5 79 102-184 6-85 (89)
216 2cpy_A RNA-binding protein 12; 99.6 2.7E-16 9.3E-21 123.7 7.7 85 100-188 13-98 (114)
217 2cpf_A RNA binding motif prote 99.6 3.3E-16 1.1E-20 119.8 7.9 80 102-184 5-88 (98)
218 2dgx_A KIAA0430 protein; RRM d 99.6 4.1E-16 1.4E-20 118.7 8.2 78 102-184 9-90 (96)
219 3s7r_A Heterogeneous nuclear r 99.6 7.2E-16 2.5E-20 115.1 9.3 79 99-181 8-87 (87)
220 2ad9_A Polypyrimidine tract-bi 99.6 4.2E-16 1.4E-20 122.3 8.3 78 100-184 29-107 (119)
221 2jvo_A Nucleolar protein 3; nu 99.6 5E-16 1.7E-20 120.8 8.8 81 8-99 25-105 (108)
222 2fc9_A NCL protein; structure 99.6 2.5E-16 8.4E-21 121.2 6.9 85 8-99 9-93 (101)
223 2mss_A Protein (musashi1); RNA 99.6 3E-16 1E-20 113.7 6.9 74 104-181 1-75 (75)
224 2jvr_A Nucleolar protein 3; RN 99.6 2E-16 7E-21 123.0 6.4 80 10-96 24-104 (111)
225 1x4d_A Matrin 3; structural ge 99.6 4E-16 1.4E-20 119.3 7.8 77 101-184 14-92 (102)
226 2cqd_A RNA-binding region cont 99.6 6.3E-16 2.2E-20 122.1 9.0 83 98-184 13-96 (116)
227 2dnn_A RNA-binding protein 12; 99.6 1.5E-16 5E-21 123.6 5.2 79 11-95 13-91 (109)
228 1x4c_A Splicing factor, argini 99.6 6.6E-16 2.3E-20 120.3 9.0 82 9-98 10-94 (108)
229 2cq4_A RNA binding motif prote 99.6 3.9E-16 1.3E-20 122.9 7.7 84 100-187 23-107 (114)
230 4a8x_A RNA-binding protein wit 99.6 2.1E-16 7.2E-21 118.3 5.8 80 102-184 4-85 (88)
231 2cpe_A RNA-binding protein EWS 99.6 5.7E-16 2E-20 121.7 8.6 84 99-185 12-104 (113)
232 2dgw_A Probable RNA-binding pr 99.6 8.7E-16 3E-20 115.7 9.2 79 101-184 9-87 (91)
233 2kt5_A RNA and export factor-b 99.6 8.3E-16 2.8E-20 122.9 9.6 82 100-184 33-114 (124)
234 2hgn_A Heterogeneous nuclear r 99.6 1.1E-16 3.9E-21 129.7 4.5 119 57-184 2-123 (139)
235 2db1_A Heterogeneous nuclear r 99.6 6.4E-16 2.2E-20 122.3 8.6 81 101-185 16-99 (118)
236 2dng_A Eukaryotic translation 99.6 9.9E-16 3.4E-20 118.3 9.5 80 100-184 13-93 (103)
237 2hgm_A HNRPF protein, heteroge 99.6 3.7E-16 1.3E-20 124.2 7.2 82 9-96 37-120 (126)
238 2dha_A FLJ20171 protein; RRM d 99.6 2.6E-16 9E-21 124.8 6.3 79 11-94 20-102 (123)
239 2f3j_A RNA and export factor b 99.6 9.9E-16 3.4E-20 130.0 10.3 85 10-98 84-168 (177)
240 2j76_E EIF-4B, EIF4B, eukaryot 99.6 3.9E-16 1.3E-20 119.8 7.0 80 100-184 17-98 (100)
241 2hgn_A Heterogeneous nuclear r 99.6 2E-16 6.9E-21 128.2 5.6 81 10-96 42-122 (139)
242 3ex7_B RNA-binding protein 8A; 99.6 1E-15 3.4E-20 122.8 9.5 83 99-184 19-102 (126)
243 1nu4_A U1A RNA binding domain; 99.6 2.7E-16 9.1E-21 120.0 5.8 84 10-99 4-91 (97)
244 1u6f_A Tcubp1, RNA-binding pro 99.6 7.7E-16 2.6E-20 125.8 8.9 82 101-185 41-123 (139)
245 1wi8_A EIF-4B, eukaryotic tran 99.6 9.1E-16 3.1E-20 118.7 8.9 81 100-185 13-95 (104)
246 1wg5_A Heterogeneous nuclear r 99.6 1.2E-15 4E-20 118.0 9.4 80 101-184 14-94 (104)
247 2krb_A Eukaryotic translation 99.6 5.6E-16 1.9E-20 114.0 7.2 69 102-172 1-75 (81)
248 2m2b_A RNA-binding protein 10; 99.6 2.4E-16 8.2E-21 127.3 5.6 83 98-184 19-108 (131)
249 2dnl_A Cytoplasmic polyadenyla 99.6 2.4E-16 8.2E-21 124.1 5.5 67 10-77 4-73 (114)
250 1wex_A Hypothetical protein (r 99.6 1.4E-15 4.9E-20 117.0 9.7 78 100-184 13-91 (104)
251 1whx_A Hypothetical protein ri 99.6 5.8E-16 2E-20 121.1 7.6 77 11-96 7-83 (111)
252 1x4e_A RNA binding motif, sing 99.6 2.7E-16 9.1E-21 116.9 5.4 77 102-181 5-82 (85)
253 2cpi_A CCR4-NOT transcription 99.6 4.6E-16 1.6E-20 121.8 7.0 80 102-184 15-101 (111)
254 2dnp_A RNA-binding protein 14; 99.6 1.1E-15 3.9E-20 114.8 8.7 81 8-99 3-83 (90)
255 2ek1_A RNA-binding protein 12; 99.6 4.8E-16 1.6E-20 118.1 6.6 79 102-183 15-94 (95)
256 2kvi_A Nuclear polyadenylated 99.6 1.2E-15 4.3E-20 116.0 9.0 78 9-97 5-83 (96)
257 2a3j_A U1 small nuclear ribonu 99.6 1.4E-15 4.6E-20 121.5 9.5 84 101-189 28-115 (127)
258 1wez_A HnRNP H', FTP-3, hetero 99.6 9.3E-16 3.2E-20 118.0 8.3 78 101-183 14-91 (102)
259 2cq1_A PTB-like protein L; RRM 99.6 1.4E-15 4.7E-20 116.4 9.1 77 100-184 13-91 (101)
260 2dnn_A RNA-binding protein 12; 99.6 1.5E-15 5E-20 117.9 9.3 78 102-184 16-93 (109)
261 1uaw_A Mouse-musashi-1; RNP-ty 99.6 4.5E-16 1.5E-20 113.3 6.1 75 103-181 1-76 (77)
262 2cqp_A RNA-binding protein 12; 99.6 4.5E-16 1.5E-20 119.0 6.4 81 101-184 14-95 (98)
263 2nlw_A Eukaryotic translation 99.6 1E-15 3.5E-20 118.6 8.2 80 101-183 14-99 (105)
264 2ki2_A SS-DNA binding protein 99.6 2.4E-16 8.2E-21 118.5 4.5 80 103-186 2-82 (90)
265 2cq2_A Hypothetical protein LO 99.6 4.5E-16 1.6E-20 120.8 6.1 82 8-95 19-104 (114)
266 2i2y_A Fusion protein consists 99.6 1.8E-15 6E-20 125.3 10.0 82 8-97 67-148 (150)
267 2cpd_A Apobec-1 stimulating pr 99.6 2E-15 6.7E-20 115.6 9.4 85 4-99 5-91 (99)
268 1x4a_A Splicing factor, argini 99.6 2.1E-15 7.1E-20 117.7 9.7 80 100-184 20-99 (109)
269 2xnq_A Nuclear polyadenylated 99.6 1.9E-15 6.5E-20 115.2 9.2 78 8-96 16-94 (97)
270 2xs2_A Deleted in azoospermia- 99.6 2.3E-16 7.7E-21 121.7 4.1 80 10-95 5-84 (102)
271 2rs2_A Musashi-1, RNA-binding 99.6 1.2E-15 4.2E-20 118.9 8.3 83 99-185 22-105 (109)
272 2j8a_A Histone-lysine N-methyl 99.6 5E-16 1.7E-20 120.9 5.8 78 15-95 3-94 (136)
273 2dgt_A RNA-binding protein 30; 99.6 1.4E-15 4.8E-20 114.8 8.1 81 8-99 4-84 (92)
274 1why_A Hypothetical protein ri 99.6 2.2E-15 7.5E-20 114.9 9.3 78 101-184 16-93 (97)
275 2lmi_A GRSF-1, G-rich sequence 99.6 8.2E-16 2.8E-20 119.5 6.9 82 100-185 9-93 (107)
276 1fjc_A Nucleolin RBD2, protein 99.6 3E-16 1E-20 119.5 4.4 84 7-98 9-92 (96)
277 1x4c_A Splicing factor, argini 99.6 2.1E-15 7.1E-20 117.5 9.2 78 100-184 13-93 (108)
278 2fc9_A NCL protein; structure 99.6 1.9E-15 6.6E-20 116.2 8.7 80 99-184 12-91 (101)
279 1h2v_Z 20 kDa nuclear CAP bind 99.6 3E-15 1E-19 124.7 10.6 81 101-184 38-119 (156)
280 2dh8_A DAZ-associated protein 99.6 7.9E-16 2.7E-20 119.2 6.6 82 100-185 14-96 (105)
281 2dgu_A Heterogeneous nuclear r 99.6 1.5E-15 5.3E-20 117.1 8.2 79 10-99 7-85 (103)
282 2e44_A Insulin-like growth fac 99.6 2.4E-15 8.3E-20 114.4 8.9 83 8-97 9-92 (96)
283 2jvr_A Nucleolar protein 3; RN 99.6 1.2E-15 4.2E-20 118.6 7.3 79 101-185 27-106 (111)
284 1wf1_A RNA-binding protein RAL 99.6 2.2E-15 7.4E-20 117.8 8.7 76 11-97 24-100 (110)
285 2e5g_A U6 snRNA-specific termi 99.6 3.4E-15 1.1E-19 113.2 9.5 79 10-97 4-82 (94)
286 1wel_A RNA-binding protein 12; 99.6 2.7E-15 9.4E-20 119.9 9.5 84 101-188 24-108 (124)
287 3beg_B Splicing factor, argini 99.6 1.8E-15 6.2E-20 119.1 8.2 66 11-84 13-78 (115)
288 2cqh_A IGF-II mRNA-binding pro 99.6 1.1E-15 3.6E-20 115.7 6.6 82 10-100 4-86 (93)
289 3q2s_C Cleavage and polyadenyl 99.6 2E-15 7E-20 133.6 9.4 84 101-187 67-153 (229)
290 2dis_A Unnamed protein product 99.6 1.6E-15 5.5E-20 118.4 7.7 81 102-185 8-93 (109)
291 2cpj_A Non-POU domain-containi 99.6 3.4E-15 1.2E-19 114.3 9.4 77 100-184 13-89 (99)
292 1whx_A Hypothetical protein ri 99.6 2.7E-15 9.2E-20 117.3 8.8 78 99-184 7-84 (111)
293 2cqg_A TDP-43, TAR DNA-binding 99.6 4.2E-15 1.4E-19 114.7 9.8 80 100-184 13-93 (103)
294 1x4b_A Heterogeneous nuclear r 99.6 1.8E-15 6.3E-20 119.4 7.8 82 100-185 25-107 (116)
295 3zzy_A Polypyrimidine tract-bi 99.6 4.8E-15 1.6E-19 117.7 10.0 77 103-184 29-106 (130)
296 3d2w_A TAR DNA-binding protein 99.6 3.3E-15 1.1E-19 111.8 8.6 78 100-186 9-86 (89)
297 3d2w_A TAR DNA-binding protein 99.6 1.4E-15 4.6E-20 114.0 6.2 80 9-98 6-85 (89)
298 2jwn_A Embryonic polyadenylate 99.6 2.5E-15 8.6E-20 120.1 8.1 80 101-184 35-115 (124)
299 1sjr_A Polypyrimidine tract-bi 99.6 4.8E-15 1.7E-19 122.2 9.8 82 11-97 43-124 (164)
300 2dha_A FLJ20171 protein; RRM d 99.6 1.8E-15 6E-20 120.0 6.9 80 102-185 23-106 (123)
301 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 3.5E-15 1.2E-19 121.9 9.0 80 99-181 60-140 (140)
302 1x4f_A Matrin 3; structural ge 99.6 1.6E-15 5.4E-20 117.6 6.5 77 101-184 24-102 (112)
303 2ytc_A PRE-mRNA-splicing facto 99.6 4.1E-15 1.4E-19 110.4 8.4 76 99-182 9-85 (85)
304 1sjr_A Polypyrimidine tract-bi 99.6 4.8E-15 1.6E-19 122.2 9.5 79 102-184 46-124 (164)
305 2dnq_A RNA-binding protein 4B; 99.6 7.1E-15 2.4E-19 110.4 9.7 74 101-184 7-80 (90)
306 2hvz_A Splicing factor, argini 99.6 2.7E-15 9.1E-20 115.4 7.4 76 103-185 1-76 (101)
307 2cq2_A Hypothetical protein LO 99.6 4.3E-15 1.5E-19 115.2 8.4 78 101-183 24-105 (114)
308 2jvo_A Nucleolar protein 3; nu 99.6 3.8E-15 1.3E-19 115.8 8.1 79 99-187 28-106 (108)
309 2e5j_A Methenyltetrahydrofolat 99.6 6.8E-15 2.3E-19 112.2 9.2 78 100-184 17-94 (97)
310 1nu4_A U1A RNA binding domain; 99.6 2.1E-15 7.1E-20 115.0 6.1 83 101-188 7-93 (97)
311 1x5p_A Negative elongation fac 99.6 5.8E-15 2E-19 112.5 8.6 82 7-99 8-89 (97)
312 2la4_A Nuclear and cytoplasmic 99.6 2.5E-15 8.5E-20 115.5 6.5 74 102-183 27-100 (101)
313 1iqt_A AUF1, heterogeneous nuc 99.6 1.4E-15 4.7E-20 110.2 4.7 74 104-181 1-75 (75)
314 1fjc_A Nucleolin RBD2, protein 99.6 2.2E-15 7.6E-20 114.7 6.1 81 97-184 11-91 (96)
315 2e5i_A Heterogeneous nuclear r 99.6 1.2E-14 4E-19 115.0 10.2 76 103-184 26-102 (124)
316 1x4g_A Nucleolysin TIAR; struc 99.6 5.5E-15 1.9E-19 115.3 8.1 78 100-185 23-100 (109)
317 2xs2_A Deleted in azoospermia- 99.6 1.3E-15 4.5E-20 117.3 4.4 81 100-185 7-87 (102)
318 3egn_A RNA-binding protein 40; 99.6 8.9E-16 3E-20 126.0 3.4 85 10-97 41-130 (143)
319 2diu_A KIAA0430 protein; struc 99.6 1.7E-14 5.8E-19 106.1 9.7 75 12-99 6-86 (96)
320 1wg1_A KIAA1579 protein, homol 99.6 2.9E-15 9.8E-20 112.1 5.8 75 12-96 3-77 (88)
321 2hgm_A HNRPF protein, heteroge 99.6 4.3E-15 1.5E-19 118.1 7.1 79 101-184 41-121 (126)
322 2dgt_A RNA-binding protein 30; 99.6 1.2E-14 4E-19 109.7 9.1 75 100-184 8-82 (92)
323 2cpx_A Hypothetical protein FL 99.6 1.4E-14 4.7E-19 114.1 9.9 81 99-185 22-106 (115)
324 2f3j_A RNA and export factor b 99.6 9.4E-15 3.2E-19 124.0 9.1 81 101-184 87-167 (177)
325 2xnq_A Nuclear polyadenylated 99.6 1.4E-14 4.8E-19 110.3 9.2 75 100-184 20-95 (97)
326 2lcw_A RNA-binding protein FUS 99.3 3.8E-16 1.3E-20 123.4 0.0 85 100-187 5-98 (116)
327 2fc8_A NCL protein; structure 99.5 2E-14 6.8E-19 110.6 9.5 80 100-185 13-93 (102)
328 2e5i_A Heterogeneous nuclear r 99.5 2.4E-14 8.3E-19 113.2 10.0 76 15-97 26-102 (124)
329 2dnp_A RNA-binding protein 14; 99.5 1.5E-14 5E-19 108.7 8.4 75 100-184 7-81 (90)
330 3pgw_S U1-70K; protein-RNA com 99.5 1E-14 3.5E-19 141.1 9.4 84 11-97 99-182 (437)
331 1wf1_A RNA-binding protein RAL 99.5 1.5E-14 5.2E-19 112.9 8.3 74 101-184 26-100 (110)
332 1fj7_A Nucleolin RBD1, protein 99.5 1.5E-15 5.1E-20 116.8 2.4 80 101-185 16-96 (101)
333 2hzc_A Splicing factor U2AF 65 99.5 1.4E-14 4.7E-19 108.1 7.4 72 11-92 3-85 (87)
334 2kvi_A Nuclear polyadenylated 99.5 3.5E-14 1.2E-18 108.0 9.7 75 100-184 8-83 (96)
335 2dgu_A Heterogeneous nuclear r 99.5 1.8E-14 6.1E-19 111.1 8.2 74 102-185 11-84 (103)
336 1wg1_A KIAA1579 protein, homol 99.5 1.5E-14 5E-19 108.2 7.3 75 101-184 4-78 (88)
337 2cpd_A Apobec-1 stimulating pr 99.5 3.2E-14 1.1E-18 108.8 9.2 75 100-184 13-89 (99)
338 3zzy_A Polypyrimidine tract-bi 99.5 1.5E-14 5.1E-19 114.9 7.4 80 12-97 26-106 (130)
339 3beg_B Splicing factor, argini 99.5 2.4E-14 8.1E-19 112.7 8.3 76 101-183 15-93 (115)
340 2bz2_A Negative elongation fac 99.5 3.3E-14 1.1E-18 112.8 9.0 79 9-98 34-112 (121)
341 1wf0_A TDP-43, TAR DNA-binding 99.5 5.1E-15 1.7E-19 110.7 3.8 78 12-99 3-80 (88)
342 2pe8_A Splicing factor 45; RRM 99.5 4.9E-14 1.7E-18 108.6 9.1 84 10-96 4-93 (105)
343 3egn_A RNA-binding protein 40; 99.5 7.8E-15 2.7E-19 120.3 4.7 85 100-187 43-133 (143)
344 2voo_A Lupus LA protein; RNA-b 99.5 1.5E-14 5E-19 124.6 6.2 79 13-96 108-186 (193)
345 2j8a_A Histone-lysine N-methyl 99.5 1.8E-14 6.2E-19 112.1 6.0 79 103-184 3-96 (136)
346 2cqh_A IGF-II mRNA-binding pro 99.5 2E-14 6.9E-19 108.6 6.2 75 101-184 7-83 (93)
347 2voo_A Lupus LA protein; RNA-b 99.5 1E-13 3.5E-18 119.3 11.2 80 101-184 108-187 (193)
348 1x5p_A Negative elongation fac 99.5 9.1E-14 3.1E-18 105.8 9.1 75 100-184 13-87 (97)
349 2diu_A KIAA0430 protein; struc 99.5 6.9E-14 2.4E-18 102.9 7.9 70 104-185 11-85 (96)
350 2pe8_A Splicing factor 45; RRM 99.5 1.5E-13 5.3E-18 105.8 9.8 81 101-184 7-94 (105)
351 2e44_A Insulin-like growth fac 99.5 6.6E-14 2.3E-18 106.4 7.4 78 101-184 14-92 (96)
352 3u1l_A PRE-mRNA-splicing facto 99.5 7.1E-14 2.4E-18 123.1 8.5 81 11-99 131-231 (240)
353 3u1l_A PRE-mRNA-splicing facto 99.5 7.4E-14 2.5E-18 122.9 8.6 85 99-190 131-235 (240)
354 2dnl_A Cytoplasmic polyadenyla 99.5 8.5E-14 2.9E-18 109.4 7.8 63 101-164 7-73 (114)
355 2e5g_A U6 snRNA-specific termi 99.5 7.8E-14 2.7E-18 105.6 7.3 74 102-184 8-82 (94)
356 2hzc_A Splicing factor U2AF 65 99.4 1.5E-13 5.3E-18 102.3 7.4 70 101-179 5-85 (87)
357 1wf0_A TDP-43, TAR DNA-binding 99.4 1E-13 3.5E-18 103.5 5.9 74 102-184 5-78 (88)
358 2bz2_A Negative elongation fac 99.4 3E-13 1E-17 107.2 8.9 77 100-186 37-113 (121)
359 2dit_A HIV TAT specific factor 99.4 6.1E-13 2.1E-17 104.0 8.8 85 6-97 7-102 (112)
360 3v4m_A Splicing factor U2AF 65 99.4 9.1E-13 3.1E-17 101.5 6.5 82 12-96 3-96 (105)
361 3tht_A Alkylated DNA repair pr 99.4 1.3E-12 4.3E-17 121.3 8.4 86 3-94 7-96 (345)
362 1jmt_A Splicing factor U2AF 35 99.3 3.4E-13 1.1E-17 103.8 3.8 72 107-181 20-103 (104)
363 3v4m_A Splicing factor U2AF 65 99.3 1.5E-12 5.1E-17 100.3 7.2 81 102-185 5-98 (105)
364 3ue2_A Poly(U)-binding-splicin 99.3 1.2E-12 4E-17 102.9 6.4 81 12-95 18-107 (118)
365 1jmt_A Splicing factor U2AF 35 99.3 3.9E-13 1.3E-17 103.4 3.1 72 19-94 20-103 (104)
366 3tht_A Alkylated DNA repair pr 99.3 2.7E-12 9.2E-17 119.1 8.7 78 100-182 16-97 (345)
367 2dit_A HIV TAT specific factor 99.3 5.6E-12 1.9E-16 98.5 9.1 78 101-184 14-102 (112)
368 2d9o_A DNAJ (HSP40) homolog, s 99.3 1.1E-11 3.6E-16 94.2 10.3 77 12-98 8-91 (100)
369 3ue2_A Poly(U)-binding-splicin 99.3 7.7E-12 2.6E-16 98.1 7.7 81 101-184 19-109 (118)
370 2d9o_A DNAJ (HSP40) homolog, s 99.2 2.4E-11 8.3E-16 92.2 7.2 64 112-184 27-90 (100)
371 3s6e_A RNA-binding protein 39; 99.1 1.2E-10 4.2E-15 90.6 7.0 78 102-185 7-94 (114)
372 1owx_A Lupus LA protein, SS-B, 99.1 1.9E-10 6.6E-15 89.6 7.5 80 9-96 13-95 (121)
373 3s6e_A RNA-binding protein 39; 99.1 3.8E-10 1.3E-14 87.8 7.7 77 12-95 5-91 (114)
374 1owx_A Lupus LA protein, SS-B, 99.0 1.1E-09 3.7E-14 85.3 10.0 77 101-184 17-96 (121)
375 2dnr_A Synaptojanin-1; RRM dom 98.8 3.5E-09 1.2E-13 77.1 5.4 75 11-97 4-86 (91)
376 2dnr_A Synaptojanin-1; RRM dom 98.8 1.4E-08 4.8E-13 74.0 6.4 71 102-183 7-85 (91)
377 3dxb_A Thioredoxin N-terminall 98.7 8.2E-08 2.8E-12 84.3 11.6 69 113-184 140-213 (222)
378 1ufw_A Synaptojanin 2; RNP dom 98.7 2E-08 6.9E-13 73.5 5.2 73 10-94 11-92 (95)
379 3dxb_A Thioredoxin N-terminall 98.6 5.8E-08 2E-12 85.2 7.5 67 26-95 141-211 (222)
380 1ufw_A Synaptojanin 2; RNP dom 98.5 7E-08 2.4E-12 70.6 3.9 70 101-181 14-92 (95)
381 2l9w_A U4/U6 snRNA-associated- 98.0 1.1E-05 3.8E-10 60.1 6.6 72 102-181 21-97 (117)
382 2dhx_A Poly (ADP-ribose) polym 97.9 7.2E-05 2.5E-09 55.4 9.5 90 11-115 5-99 (104)
383 1uw4_A UPF3X; nonsense mediate 97.8 9.7E-05 3.3E-09 54.1 7.8 70 15-84 2-73 (91)
384 2l9w_A U4/U6 snRNA-associated- 97.7 0.00011 3.8E-09 54.8 7.7 67 11-84 18-89 (117)
385 1whv_A Poly(A)-specific ribonu 97.6 0.00026 8.8E-09 51.7 7.6 59 10-77 12-70 (100)
386 1uw4_A UPF3X; nonsense mediate 97.5 0.00077 2.6E-08 49.3 9.7 79 103-181 2-85 (91)
387 1whv_A Poly(A)-specific ribonu 97.3 0.00063 2.1E-08 49.7 6.1 55 102-164 16-70 (100)
388 1wwh_A Nucleoporin 35, nucleop 97.2 0.00096 3.3E-08 51.1 6.6 67 9-84 19-85 (119)
389 1wey_A Calcipressin 1; structu 97.1 0.00057 1.9E-08 50.8 4.7 73 102-182 5-82 (104)
390 3ctr_A Poly(A)-specific ribonu 97.1 0.00068 2.3E-08 49.7 4.9 53 16-77 8-60 (101)
391 3ctr_A Poly(A)-specific ribonu 97.1 0.00058 2E-08 50.0 4.4 54 103-164 7-60 (101)
392 2l08_A Regulator of nonsense t 96.9 0.0008 2.7E-08 49.4 3.8 72 13-84 8-81 (97)
393 2l08_A Regulator of nonsense t 96.7 0.0042 1.4E-07 45.6 6.2 80 102-181 9-93 (97)
394 2dhx_A Poly (ADP-ribose) polym 96.6 0.017 5.9E-07 42.7 9.0 68 102-180 8-80 (104)
395 1wwh_A Nucleoporin 35, nucleop 96.4 0.021 7.1E-07 43.7 8.7 74 102-184 24-97 (119)
396 1wey_A Calcipressin 1; structu 96.3 0.0057 1.9E-07 45.4 5.0 65 13-84 4-73 (104)
397 3pq1_A Poly(A) RNA polymerase; 96.2 0.00079 2.7E-08 64.5 0.3 61 9-75 48-108 (464)
398 3p3d_A Nucleoporin 53; structu 94.8 0.023 8E-07 44.0 3.7 69 13-84 6-88 (132)
399 3pq1_A Poly(A) RNA polymerase; 94.3 0.023 7.9E-07 54.4 3.2 55 102-161 53-107 (464)
400 3p3d_A Nucleoporin 53; structu 91.0 0.38 1.3E-05 37.2 5.4 76 102-182 7-97 (132)
401 3d45_A Poly(A)-specific ribonu 90.4 0.8 2.7E-05 44.6 8.5 55 14-77 440-494 (507)
402 3d45_A Poly(A)-specific ribonu 84.2 2.2 7.6E-05 41.5 7.4 56 102-165 440-495 (507)
403 4e8u_A Putative uncharacterize 61.4 15 0.00052 29.7 5.6 48 351-401 14-72 (172)
404 3j21_T 50S ribosomal protein L 48.1 35 0.0012 24.1 5.0 56 104-161 24-81 (86)
405 3j21_T 50S ribosomal protein L 44.1 59 0.002 22.9 5.7 58 16-76 24-83 (86)
406 4e8u_A Putative uncharacterize 39.8 79 0.0027 25.5 6.5 50 16-68 14-74 (172)
407 4eyt_A Telomerase associated p 38.9 1E+02 0.0034 21.7 8.5 57 12-76 10-66 (129)
408 3ulj_A LIN28B, DNA-binding pro 28.3 19 0.00063 25.8 1.0 11 388-398 17-27 (90)
409 2k5n_A Putative cold-shock pro 27.9 21 0.00071 24.4 1.1 11 389-399 12-22 (74)
410 3cam_A Cold-shock domain famil 26.4 23 0.0008 23.6 1.1 11 389-399 11-21 (67)
411 1c9o_A CSPB, cold-shock protei 26.1 24 0.00081 23.4 1.1 11 389-399 11-21 (66)
412 4a17_R RPL23A, 60S ribosomal p 25.6 88 0.003 24.5 4.4 56 104-161 88-145 (150)
413 4eyt_A Telomerase associated p 25.5 1.8E+02 0.006 20.4 7.6 55 102-163 12-66 (129)
414 3fut_A Dimethyladenosine trans 25.4 63 0.0022 28.2 4.1 34 351-385 112-145 (271)
415 3u5e_X 60S ribosomal protein L 25.0 97 0.0033 24.1 4.5 56 104-161 80-137 (142)
416 1g6p_A Cold shock protein TMCS 24.6 26 0.0009 23.2 1.1 11 389-399 10-20 (66)
417 2i9x_A Putative septation prot 24.4 88 0.003 22.1 3.9 26 375-400 5-30 (87)
418 2f06_A Conserved hypothetical 24.2 2.3E+02 0.008 21.4 8.8 111 28-166 20-133 (144)
419 3lpe_A Putative transcription 24.1 1.8E+02 0.0061 20.5 5.7 44 28-76 22-70 (92)
420 3ts2_A Protein LIN-28 homolog 24.0 16 0.00053 28.9 -0.1 28 117-151 2-29 (148)
421 1h95_A CSD, Y-box binding prot 23.5 28 0.00095 24.1 1.1 12 388-399 17-28 (79)
422 3u5e_X 60S ribosomal protein L 22.7 1.7E+02 0.0059 22.7 5.5 57 17-76 81-139 (142)
423 3i2z_B RNA chaperone, negative 22.4 31 0.001 23.3 1.1 11 389-399 15-25 (71)
424 4a17_R RPL23A, 60S ribosomal p 21.9 2E+02 0.0068 22.5 5.8 57 17-76 89-147 (150)
425 3uzu_A Ribosomal RNA small sub 21.8 42 0.0014 29.5 2.2 35 351-385 116-150 (279)
426 1ytr_A Bacteriocin plantaricin 20.4 51 0.0017 16.6 1.4 12 28-39 14-25 (26)
No 1
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=1.3e-42 Score=322.35 Aligned_cols=228 Identities=16% Similarity=0.259 Sum_probs=183.3
Q ss_pred cccCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCC
Q 015716 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (402)
Q Consensus 7 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~ 86 (402)
.....++.++|||+|||+++|+++|+++|++||+|.+|+++++..+ ++|||||+|.+.++|++|++ +++.. +.|
T Consensus 34 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~-~~~~~-~~g-- 107 (292)
T 2ghp_A 34 ALTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAIT-KTHKV-VGQ-- 107 (292)
T ss_dssp --------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHT-TTTCE-ETT--
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHH-hCCcE-eCC--
Confidence 3445677899999999999999999999999999999999998743 58999999999999999995 75554 666
Q ss_pred CCccccccCcccccccceEEEcCCCCCCcHHHHHHhhccCC-CeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcC
Q 015716 87 SPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYG-TIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 165 (402)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G-~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 165 (402)
+.+.+.+.. .++|||+|||.++++++|+++|+.|| .|.+|.++++..+.++|||||+|.+.++|.+|++.|||
T Consensus 108 ~~i~v~~~~------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 181 (292)
T 2ghp_A 108 NEIIVSHLT------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNG 181 (292)
T ss_dssp EECEEEECC------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTT
T ss_pred cEEEEEECC------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCC
Confidence 778777653 68999999999999999999999999 99999999988888999999999999999999999999
Q ss_pred CcccCCCceeEEEEEcCCHHHHHHHHHHHHHhhcCCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCCCCCCcCCCCCCCC
Q 015716 166 KHKMEGSSVPLVVKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPM 245 (402)
Q Consensus 166 ~~~~~g~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~p~ 245 (402)
.. ++|+ .|.|.++.+....... .
T Consensus 182 ~~-~~g~--~l~v~~a~~~~~~~~~-----~------------------------------------------------- 204 (292)
T 2ghp_A 182 LK-IEGY--TLVTKVSNPLEKSKRT-----D------------------------------------------------- 204 (292)
T ss_dssp CE-ETTE--ECEEEECCCC-------------------------------------------------------------
T ss_pred CE-eCCc--EEEEEECCCCcccccc-----c-------------------------------------------------
Confidence 87 6664 6899998765332110 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 015716 246 QNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAV 325 (402)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (402)
T Consensus 205 -------------------------------------------------------------------------------- 204 (292)
T 2ghp_A 205 -------------------------------------------------------------------------------- 204 (292)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCCcccCCCCccEEEecCCCC-CCHHHHHHHhhccCcEEEEEEEEeCC-CCCcceEEEEEeecC
Q 015716 326 ANSNPSTSSSGGTGSGGQIEGPPGANLFIYHIPQE-FGDQELGNAFQAFGRVLSAKVFVDKA-TGVSKCFGKYTVDLD 401 (402)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~-~t~~~L~~~F~~fG~v~~~~i~~d~~-tg~skG~gFV~f~~~ 401 (402)
......++|||+|||.+ +++++|+++|++||.|.+|+|++++. ||++||||||.|.++
T Consensus 205 ------------------~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~ 264 (292)
T 2ghp_A 205 ------------------SATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENK 264 (292)
T ss_dssp --------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSH
T ss_pred ------------------ccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCH
Confidence 00124668999999999 99999999999999999999999986 599999999999874
No 2
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=4.7e-42 Score=317.27 Aligned_cols=218 Identities=20% Similarity=0.335 Sum_probs=190.7
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCC
Q 015716 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (402)
Q Consensus 9 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~ 88 (402)
+...+.++|||+|||.++|+++|+++|++|| |.+|++ ++++|||||+|.+.++|++|++.|++.. +.| +.
T Consensus 17 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~-~~g--~~ 86 (284)
T 3smz_A 17 RQFRNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSR-LRE--RE 86 (284)
T ss_dssp HHHHCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCE-ETT--EE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCe-eCC--eE
Confidence 3455789999999999999999999999999 999988 4578999999999999999999997766 666 77
Q ss_pred ccccccCcccccccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCc
Q 015716 89 LQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKH 167 (402)
Q Consensus 89 ~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 167 (402)
+.+.+.. ..++|||+|||.++++++|+++|+.||.|.++.++++. +|.++|||||+|.+.++|.+|++.|+|..
T Consensus 87 i~v~~~~-----~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~ 161 (284)
T 3smz_A 87 LSVQLQP-----TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKP 161 (284)
T ss_dssp CEEEECC-----CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred EEEEecC-----CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCE
Confidence 7777643 35799999999999999999999999999999999886 89999999999999999999999999987
Q ss_pred ccCCCceeEEEEEcCCHHHHHHHHHHHHHhhcCCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCCCCCCcCCCCCCCCCC
Q 015716 168 KMEGSSVPLVVKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQN 247 (402)
Q Consensus 168 ~~~g~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~ 247 (402)
++|+ .|.|.++..+....
T Consensus 162 -~~g~--~i~v~~a~~~~~~~----------------------------------------------------------- 179 (284)
T 3smz_A 162 -LGPR--TLYVHWTDAGQLTP----------------------------------------------------------- 179 (284)
T ss_dssp -ETTE--ECEEEECCGGGCCT-----------------------------------------------------------
T ss_pred -eCCc--EEEEEECCCCCCCc-----------------------------------------------------------
Confidence 6665 68899886531000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCC
Q 015716 248 QPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVAN 327 (402)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (402)
T Consensus 180 -------------------------------------------------------------------------------- 179 (284)
T 3smz_A 180 -------------------------------------------------------------------------------- 179 (284)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCcccCCCCccEEEecCCCCC-CHHHHHHHhhccCcEEEEEEEEeCCCCCcceEEEEEeecC
Q 015716 328 SNPSTSSSGGTGSGGQIEGPPGANLFIYHIPQEF-GDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGKYTVDLD 401 (402)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~-t~~~L~~~F~~fG~v~~~~i~~d~~tg~skG~gFV~f~~~ 401 (402)
.....++|||+|||.++ ++++|+++|++||.|.+|+|+.|+ +|+++|||||.|.++
T Consensus 180 -----------------~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~ 236 (284)
T 3smz_A 180 -----------------ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETA 236 (284)
T ss_dssp -----------------TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSH
T ss_pred -----------------ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCH
Confidence 01145689999999995 999999999999999999999998 899999999999874
No 3
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=1.4e-35 Score=253.56 Aligned_cols=170 Identities=42% Similarity=0.786 Sum_probs=155.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCC--CcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCcc
Q 015716 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTR--ASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (402)
Q Consensus 13 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~--~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~ 90 (402)
+.++|||+|||+++|+++|+++|++||+|.+|++++++.++ +++|||||+|.+.++|++|++.|++..+..+..+.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 57899999999999999999999999999999999998876 8999999999999999999999998887777677887
Q ss_pred ccccCcccc--cccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcc
Q 015716 91 VKYADGELE--RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 168 (402)
Q Consensus 91 ~~~~~~~~~--~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 168 (402)
+.+...... ...++|||+|||.++++++|+++|++||.|.++.++++.+|.++|||||+|.+.++|.+|++.|||..+
T Consensus 82 ~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 161 (175)
T 3nmr_A 82 MKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQT 161 (175)
T ss_dssp EEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCC
T ss_pred EccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcc
Confidence 777655443 247899999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCCCceeEEEEEcC
Q 015716 169 MEGSSVPLVVKWAD 182 (402)
Q Consensus 169 ~~g~~~~l~v~~a~ 182 (402)
.+|+.++|.|.||+
T Consensus 162 ~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 162 MEGCSSPMVVKFAD 175 (175)
T ss_dssp CTTCSSCCEEEECC
T ss_pred cCCCCCCeEEEecC
Confidence 77766789999985
No 4
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=1.6e-35 Score=261.64 Aligned_cols=174 Identities=25% Similarity=0.416 Sum_probs=150.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCc
Q 015716 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (402)
Q Consensus 10 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~ 89 (402)
...+.++|||+|||+++|+++|+++|++||+|++|+|++|+.+++++|||||+|.+.++|++||+.+++.. +.| +.+
T Consensus 11 p~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~-~~g--~~i 87 (213)
T 4f02_A 11 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDV-IKG--KPV 87 (213)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCE-ETT--EEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhh-cCC--ccc
Confidence 34567899999999999999999999999999999999999999999999999999999999999997655 666 677
Q ss_pred cccccCccc---ccccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCC
Q 015716 90 QVKYADGEL---ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 166 (402)
Q Consensus 90 ~~~~~~~~~---~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 166 (402)
++.++.... .....+|||+|||+++++++|+++|++||.|.+|+|+++. +.++|||||+|.+.++|.+|++.|||.
T Consensus 88 ~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~-~~~~g~~fV~f~~~~~a~~Ai~~lng~ 166 (213)
T 4f02_A 88 RIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NGSKGYGFVHFETQEAAERAIEKMNGM 166 (213)
T ss_dssp EEEECCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TEEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred ccccccccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC-CCCceEEEEEeCCHHHHHHHHHHhCCC
Confidence 766654332 2236789999999999999999999999999999999885 447999999999999999999999998
Q ss_pred cccCCCceeEEEEEcCCHHHHHHH
Q 015716 167 HKMEGSSVPLVVKWADTEKERQAR 190 (402)
Q Consensus 167 ~~~~g~~~~l~v~~a~~~~~~~~~ 190 (402)
. ++|+ .|.|.++.++.++...
T Consensus 167 ~-~~g~--~i~V~~a~~~~~~~~~ 187 (213)
T 4f02_A 167 L-LNDR--KVFVGRFKSRKEREAE 187 (213)
T ss_dssp E-ETTE--ECEEEECCCHHHHHHH
T ss_pred E-ECCE--EEEEEEcCCCcccchh
Confidence 7 6765 6999999998766544
No 5
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=5.1e-34 Score=241.89 Aligned_cols=165 Identities=28% Similarity=0.531 Sum_probs=150.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCcccc
Q 015716 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVK 92 (402)
Q Consensus 13 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~~~ 92 (402)
+.++|||+|||+++++++|+++|++||.|.+|++++++.+++++|||||+|.+.++|++|++.|++.. +.| +.+.+.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~-~~g--~~l~v~ 77 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLR-LQT--KTIKVS 77 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCE-ETT--EECEEE
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCc-cCC--ceEEEE
Confidence 36899999999999999999999999999999999999889999999999999999999999997766 566 788888
Q ss_pred ccCcccc-cccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccC
Q 015716 93 YADGELE-RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKME 170 (402)
Q Consensus 93 ~~~~~~~-~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~ 170 (402)
++.+... ...++|||+|||.++++++|+++|++||.|.+++++++. ++.++|||||+|.+.++|.+|++.|||.. ++
T Consensus 78 ~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~-~~ 156 (167)
T 1fxl_A 78 YARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK-PS 156 (167)
T ss_dssp ECCCCCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCC-CT
T ss_pred ecCCCcccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCc-cC
Confidence 7765443 346889999999999999999999999999999999987 88899999999999999999999999987 78
Q ss_pred CCceeEEEEEc
Q 015716 171 GSSVPLVVKWA 181 (402)
Q Consensus 171 g~~~~l~v~~a 181 (402)
|+.++|.|.||
T Consensus 157 g~~~~i~v~~A 167 (167)
T 1fxl_A 157 GATEPITVKFA 167 (167)
T ss_dssp TCSSCCEEEEC
T ss_pred CCccceEEEeC
Confidence 88778999986
No 6
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=6.6e-34 Score=241.57 Aligned_cols=165 Identities=29% Similarity=0.523 Sum_probs=150.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCcccc
Q 015716 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVK 92 (402)
Q Consensus 13 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~~~ 92 (402)
+.++|||+|||+++++++|+++|++||+|.+|++++++.+++++|||||+|.+.++|++|++.|++.. +.| +.+.+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~-~~g--~~l~v~ 78 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGIT-VRN--KRLKVS 78 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCE-ETT--EECEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCE-eCC--cEEEEE
Confidence 56899999999999999999999999999999999998889999999999999999999999997766 566 788888
Q ss_pred ccCcccc-cccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccC
Q 015716 93 YADGELE-RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKME 170 (402)
Q Consensus 93 ~~~~~~~-~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~ 170 (402)
++.+... ...++|||+|||.++++++|+++|++||.|.++.++++. ++.++|||||+|.+.++|.+|++.|||.. ++
T Consensus 79 ~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~ 157 (168)
T 1b7f_A 79 YARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVI-PE 157 (168)
T ss_dssp ECCCCSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCC-CT
T ss_pred ecCCCcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCE-ec
Confidence 8765543 347899999999999999999999999999999999987 89999999999999999999999999987 67
Q ss_pred CCceeEEEEEc
Q 015716 171 GSSVPLVVKWA 181 (402)
Q Consensus 171 g~~~~l~v~~a 181 (402)
|..++|.|.||
T Consensus 158 g~~~~l~V~~A 168 (168)
T 1b7f_A 158 GGSQPLSVRLA 168 (168)
T ss_dssp TCSSCCEEEEC
T ss_pred CCCeEEEEEeC
Confidence 76678999886
No 7
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=4.1e-33 Score=246.68 Aligned_cols=169 Identities=20% Similarity=0.349 Sum_probs=148.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCc
Q 015716 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (402)
Q Consensus 10 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~ 89 (402)
...+.++|||+|||.++|+++|+++|++||+|.+|++++++.+++++|||||+|.+.++|++|++.|++.. +.| +.|
T Consensus 24 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~-~~g--~~l 100 (216)
T 2qfj_A 24 ALAIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVM-LGG--RNI 100 (216)
T ss_dssp HHHHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCC-CC---CCC
T ss_pred ccCcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCe-eCC--eeE
Confidence 44567899999999999999999999999999999999999889999999999999999999999997765 666 778
Q ss_pred cccccCcccc------------cccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHH
Q 015716 90 QVKYADGELE------------RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQA 156 (402)
Q Consensus 90 ~~~~~~~~~~------------~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A 156 (402)
.+.++..... ...++|||+|||.++++++|+++|++||.|.+++++++. ++.++|||||+|.+.++|
T Consensus 101 ~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A 180 (216)
T 2qfj_A 101 KVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSS 180 (216)
T ss_dssp EEECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred EEecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHH
Confidence 7776654322 235799999999999999999999999999999999986 789999999999999999
Q ss_pred HHHHHHHcCCcccCCCceeEEEEEcCCH
Q 015716 157 LAALEAINGKHKMEGSSVPLVVKWADTE 184 (402)
Q Consensus 157 ~~A~~~l~g~~~~~g~~~~l~v~~a~~~ 184 (402)
.+|++.|||.. ++|+ .|.|.++.++
T Consensus 181 ~~A~~~l~g~~-~~g~--~i~V~~a~~~ 205 (216)
T 2qfj_A 181 QDAVSSMNLFD-LGGQ--YLRVGKAVTP 205 (216)
T ss_dssp HHHHHHHTTCB-CSSS--BCEEEECSSC
T ss_pred HHHHHHccCCE-eCCc--EEEEEEecCC
Confidence 99999999987 6776 5899998765
No 8
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=4e-33 Score=242.92 Aligned_cols=175 Identities=23% Similarity=0.400 Sum_probs=145.6
Q ss_pred cccCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCC
Q 015716 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (402)
Q Consensus 7 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~ 86 (402)
...+..+.++|||+|||+++|+++|+++|++||.|.+|++++++.+++++|||||+|.+.++|++|++. ++.. +.|
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~-~~g-- 81 (196)
T 1l3k_A 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHK-VDG-- 81 (196)
T ss_dssp --CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCE-ETT--
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCE-ECC--
Confidence 445567889999999999999999999999999999999999998999999999999999999999987 4444 666
Q ss_pred CCccccccCcccc-------cccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHH
Q 015716 87 SPLQVKYADGELE-------RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALA 158 (402)
Q Consensus 87 ~~~~~~~~~~~~~-------~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~ 158 (402)
+.+.+.++..... ...++|||+|||.++++++|+++|++||.|.++.++++. ++.++|||||+|.+.++|.+
T Consensus 82 ~~l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~ 161 (196)
T 1l3k_A 82 RVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK 161 (196)
T ss_dssp EECEEEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred EEeeeecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHH
Confidence 7777776654322 124799999999999999999999999999999999987 78999999999999999999
Q ss_pred HHHHHcCCcccCCCceeEEEEEcCCHHHHHH
Q 015716 159 ALEAINGKHKMEGSSVPLVVKWADTEKERQA 189 (402)
Q Consensus 159 A~~~l~g~~~~~g~~~~l~v~~a~~~~~~~~ 189 (402)
|++. +|.. ++|+ .|.|.++.++.+...
T Consensus 162 A~~~-~~~~-~~G~--~i~v~~a~~k~~~~~ 188 (196)
T 1l3k_A 162 IVIQ-KYHT-VNGH--NCEVRKALSKQEMAS 188 (196)
T ss_dssp HHHC-SCCE-ETTE--ECEEEECC-------
T ss_pred HHHh-CCcE-ECCE--EEEEEecCChhHhcc
Confidence 9986 7765 7775 589999988766543
No 9
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.7e-33 Score=233.74 Aligned_cols=162 Identities=22% Similarity=0.418 Sum_probs=144.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCcccccc
Q 015716 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYA 94 (402)
Q Consensus 15 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~~~~~ 94 (402)
++|||+|||.++|+++|+++|++||+|.+|++++++. ++++|||||+|.+.++|++|++.|++.. +.| +.+.+.++
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~-~~g--~~i~v~~~ 76 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQ-IEN--NIVKINWA 76 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCE-ETT--EECEEEEC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCc-cCC--CeeEEEEc
Confidence 5899999999999999999999999999999999985 7899999999999999999999997776 556 77777776
Q ss_pred Cccc---ccccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccC
Q 015716 95 DGEL---ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKME 170 (402)
Q Consensus 95 ~~~~---~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~ 170 (402)
.... ....++|||+|||.++++++|+++|++||.|.++.++++. ++.++|||||+|.+.++|.+|++.|||.. ++
T Consensus 77 ~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~ 155 (166)
T 3md3_A 77 FQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQD-LN 155 (166)
T ss_dssp CCCCCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCE-ET
T ss_pred CCCCCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCc-cC
Confidence 5433 3346799999999999999999999999999999999985 78999999999999999999999999987 66
Q ss_pred CCceeEEEEEcCC
Q 015716 171 GSSVPLVVKWADT 183 (402)
Q Consensus 171 g~~~~l~v~~a~~ 183 (402)
|+ .|.|.||+.
T Consensus 156 g~--~i~v~~a~~ 166 (166)
T 3md3_A 156 GR--PLRINWAAK 166 (166)
T ss_dssp TE--ECEEEESCC
T ss_pred Cc--EEEEEecCC
Confidence 65 689999863
No 10
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=4.3e-33 Score=236.40 Aligned_cols=164 Identities=26% Similarity=0.391 Sum_probs=144.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCccc
Q 015716 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 91 (402)
Q Consensus 12 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~~ 91 (402)
++.++|||+|||+++|+++|+++|++||.|.+|++++++.+++++|||||+|.+.++|++|++.+ ..+.| +.+.+
T Consensus 1 k~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~---~~~~g--~~i~v 75 (167)
T 2cjk_A 1 KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQ---HILDG--KVIDP 75 (167)
T ss_dssp CGGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHSC---CEETT--EECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhcc---cccCC--eEccc
Confidence 35789999999999999999999999999999999999989999999999999999999999952 34666 66777
Q ss_pred cccCcccc-cccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCccc
Q 015716 92 KYADGELE-RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKM 169 (402)
Q Consensus 92 ~~~~~~~~-~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 169 (402)
.++.+... ...++|||+|||.++++++|+++|++||.|.+++++++. ++.++|||||+|.+.++|.+|++ ++|.. +
T Consensus 76 ~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~-~ 153 (167)
T 2cjk_A 76 KRAIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFID-F 153 (167)
T ss_dssp EECCCHHHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEEC-S
T ss_pred ccccchhhccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEE-e
Confidence 76654432 336799999999999999999999999999999999986 79999999999999999999998 78876 6
Q ss_pred CCCceeEEEEEcCCH
Q 015716 170 EGSSVPLVVKWADTE 184 (402)
Q Consensus 170 ~g~~~~l~v~~a~~~ 184 (402)
+|+ .|.|.|+.++
T Consensus 154 ~g~--~i~V~~a~pk 166 (167)
T 2cjk_A 154 KDR--KIEIKRAEPR 166 (167)
T ss_dssp SSS--CEEEEECCCC
T ss_pred CCe--EEEEeecCCC
Confidence 766 5899999864
No 11
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=5.4e-31 Score=243.09 Aligned_cols=179 Identities=22% Similarity=0.256 Sum_probs=159.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCcc
Q 015716 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (402)
Q Consensus 11 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~ 90 (402)
....++|||+|||+++++++|+++|++||.|.+|+++.++.+++++|||||+|.+.++|.+|++.|++.. +.| +.+.
T Consensus 92 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~-~~g--~~i~ 168 (284)
T 3smz_A 92 QPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKP-LGP--RTLY 168 (284)
T ss_dssp CCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCE-ETT--EECE
T ss_pred cCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCE-eCC--cEEE
Confidence 3467899999999999999999999999999999999999899999999999999999999999997765 666 7888
Q ss_pred ccccCcccc----cccceEEEcCCCCCC-cHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcC
Q 015716 91 VKYADGELE----RLEHKLFIGMLPKNV-SEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 165 (402)
Q Consensus 91 ~~~~~~~~~----~~~~~l~v~nlp~~~-t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 165 (402)
+.++..... ...++|||+|||.++ ++++|+++|+.||.|.+++|+++.+|.++|+|||+|.+.++|.+|++.|||
T Consensus 169 v~~a~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g 248 (284)
T 3smz_A 169 VHWTDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADG 248 (284)
T ss_dssp EEECCGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTT
T ss_pred EEECCCCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCC
Confidence 888765543 236799999999996 999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCceeEEEEEcCCHHHHHHHHHHHH
Q 015716 166 KHKMEGSSVPLVVKWADTEKERQARRAQKA 195 (402)
Q Consensus 166 ~~~~~g~~~~l~v~~a~~~~~~~~~~~~~~ 195 (402)
.. ++|+ .|.|.|+.++..+.....+..
T Consensus 249 ~~-~~g~--~l~v~~a~~~~~~~~~~~~~~ 275 (284)
T 3smz_A 249 LS-LGGS--HLRVSFCAPGPPGRSMLAALI 275 (284)
T ss_dssp CE-ETTE--ECEEEECCSSSCHHHHHHHHH
T ss_pred Cc-cCCe--EEEEEEecCCCcccchhhhhh
Confidence 88 6665 699999998877655544443
No 12
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.97 E-value=5.3e-31 Score=230.39 Aligned_cols=160 Identities=18% Similarity=0.299 Sum_probs=135.3
Q ss_pred CCCCeEEEcCCC-CCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCcc
Q 015716 12 EERVKLFVGQVP-KHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (402)
Q Consensus 12 ~~~~~l~V~nLp-~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~ 90 (402)
.+.++|||+||| ..+++++|+++|++||.|.+|+++++ ++|||||+|.+.++|++||+.||+.. +.| +.|.
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~-~~g--~~l~ 73 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNF-MFG--QKMN 73 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCE-ETT--EECE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCE-ECC--ceEE
Confidence 467899999999 89999999999999999999999875 36899999999999999999998766 666 6677
Q ss_pred ccccCccc--------------------------------------ccccceEEEcCCCCCCcHHHHHHhhccCCCe--e
Q 015716 91 VKYADGEL--------------------------------------ERLEHKLFIGMLPKNVSEAEVSALFSIYGTI--K 130 (402)
Q Consensus 91 ~~~~~~~~--------------------------------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v--~ 130 (402)
+.+++.+. ....++|||+|||+++++++|+++|++||.| .
T Consensus 74 v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~ 153 (205)
T 3tyt_A 74 VCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPT 153 (205)
T ss_dssp EEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCS
T ss_pred EEEccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceE
Confidence 76653210 0113579999999999999999999999998 8
Q ss_pred EEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCC--ceeEEEEEc
Q 015716 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGS--SVPLVVKWA 181 (402)
Q Consensus 131 ~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~--~~~l~v~~a 181 (402)
+++++.+. +.++|+|||+|.+.++|.+|+..|||.. ++|. ..++.|+++
T Consensus 154 ~v~~~~~~-~~~~g~gfV~f~~~~~A~~Ai~~lng~~-~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 154 SVKVFSGK-SERSSSGLLEWDSKSDALETLGFLNHYQ-MKNPNGPYPYTLKLC 204 (205)
T ss_dssp EEEECSCC-SSSSEEEEEECSSHHHHHHHHHHHTTCE-ECCSSSSSCEECEEE
T ss_pred EEEEEcCC-CCCceEEEEEeCCHHHHHHHHHHhCCCC-ccCCCCCcceEEEec
Confidence 99998876 5557999999999999999999999987 5444 346777775
No 13
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.97 E-value=2.8e-30 Score=220.08 Aligned_cols=158 Identities=27% Similarity=0.441 Sum_probs=137.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhc----C-------CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCC
Q 015716 12 EERVKLFVGQVPKHMTEAQLLAMFKEF----A-------LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKK 80 (402)
Q Consensus 12 ~~~~~l~V~nLp~~~t~~~L~~~f~~~----G-------~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~ 80 (402)
++.++|||+|||+++|+++|+++|++| | .|.++++. +++|||||+|.+.++|++|+ .|++..
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~ 74 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGII 74 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcE
Confidence 357899999999999999999999999 6 77777764 34789999999999999999 787765
Q ss_pred CCCCCCCCccccccCcccc-cccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHH
Q 015716 81 TLPGASSPLQVKYADGELE-RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALA 158 (402)
Q Consensus 81 ~~~g~~~~~~~~~~~~~~~-~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~ 158 (402)
+.| +.+.+.++..... ...++|||+|||.++++++|+++|++||.|.++.+.+++ ++.++|||||+|.+.++|.+
T Consensus 75 -~~g--~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~ 151 (172)
T 2g4b_A 75 -FQG--QSLKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQ 151 (172)
T ss_dssp -ETT--EECEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHH
T ss_pred -ecC--ceeeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHH
Confidence 666 7788877654432 336899999999999999999999999999999999996 89999999999999999999
Q ss_pred HHHHHcCCcccCCCceeEEEEEcC
Q 015716 159 ALEAINGKHKMEGSSVPLVVKWAD 182 (402)
Q Consensus 159 A~~~l~g~~~~~g~~~~l~v~~a~ 182 (402)
|++.|||.. ++|+ .|.|.||.
T Consensus 152 A~~~l~g~~-~~g~--~l~V~~As 172 (172)
T 2g4b_A 152 AIAGLNGMQ-LGDK--KLLVQRAS 172 (172)
T ss_dssp HHHHHTTCE-ETTE--ECEEEECC
T ss_pred HHHHcCCCE-ECCe--EEEEEeCC
Confidence 999999987 6665 68888873
No 14
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=3.3e-31 Score=226.60 Aligned_cols=165 Identities=21% Similarity=0.324 Sum_probs=141.6
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 015716 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (402)
Q Consensus 8 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~ 87 (402)
..+..+.++|||+|||.++++++|+++|++||.|.. .++.+..+++++|||||+|.+.++|++|++ |++.. +.| +
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~-~~g--~ 81 (175)
T 1fje_B 7 GSESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLK-VFG--N 81 (175)
T ss_dssp SSSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEE-ETT--E
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCE-eCC--e
Confidence 346778999999999999999999999999998777 344555568999999999999999999995 87766 556 7
Q ss_pred CccccccCccc---ccccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHc
Q 015716 88 PLQVKYADGEL---ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAIN 164 (402)
Q Consensus 88 ~~~~~~~~~~~---~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 164 (402)
.+.+.++.... ....++|||+|||.++++++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|++.||
T Consensus 82 ~l~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~A~~A~~~l~ 157 (175)
T 1fje_B 82 EIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQ 157 (175)
T ss_dssp EEEEECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSSSSCCSEEEEECSSHHHHHHHHHHHT
T ss_pred EEEEecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCCCCCceEEEEEECCHHHHHHHHHHhC
Confidence 88888876443 2347899999999999999999999999988766 5578899999999999999999999999
Q ss_pred CCcccCCCceeEEEEEcCCH
Q 015716 165 GKHKMEGSSVPLVVKWADTE 184 (402)
Q Consensus 165 g~~~~~g~~~~l~v~~a~~~ 184 (402)
|.. ++|+ .|.|.|+.++
T Consensus 158 g~~-~~g~--~i~v~~a~~k 174 (175)
T 1fje_B 158 GAE-IDGR--SVSLYYTGEK 174 (175)
T ss_dssp EEE-ETTE--EEEEEECSSC
T ss_pred CCE-ECCe--EEEEEecCCC
Confidence 977 6765 6999998764
No 15
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.97 E-value=8.9e-30 Score=231.80 Aligned_cols=163 Identities=26% Similarity=0.424 Sum_probs=144.1
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 015716 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (402)
Q Consensus 8 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~ 87 (402)
.......++|||+|||+++|+++|+++|++||.|.+|++.++ +|||||+|.+.++|++|++.|++.. +.| +
T Consensus 16 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~-i~g--~ 86 (261)
T 3sde_A 16 EKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTI-LKS--R 86 (261)
T ss_dssp CCSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCE-ETT--E
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcE-ECC--c
Confidence 444567789999999999999999999999999999999643 6899999999999999999997766 666 7
Q ss_pred CccccccCcccccccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHH-cCC
Q 015716 88 PLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAI-NGK 166 (402)
Q Consensus 88 ~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l-~g~ 166 (402)
.+.+.++.+ .++|||+|||..+++++|+++|+.||.|.+|.++++.+|.++|||||+|.+.++|.+|++.| ++.
T Consensus 87 ~l~v~~a~~-----~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~ 161 (261)
T 3sde_A 87 PLRIRFATH-----GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGA 161 (261)
T ss_dssp ECEEEECCC-----SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSC
T ss_pred eeEeeeccc-----CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCe
Confidence 888887754 57899999999999999999999999999999999999999999999999999999999999 555
Q ss_pred cccCCCceeEEEEEcCCH
Q 015716 167 HKMEGSSVPLVVKWADTE 184 (402)
Q Consensus 167 ~~~~g~~~~l~v~~a~~~ 184 (402)
.++.+..++|.|.++...
T Consensus 162 ~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 162 FLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp EESSSSCCBCEEEECCCE
T ss_pred EEecCCCceEEEeecccc
Confidence 545555568999998765
No 16
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.97 E-value=2.7e-29 Score=224.17 Aligned_cols=163 Identities=20% Similarity=0.347 Sum_probs=140.1
Q ss_pred ccccCCCCCCeEEEcCCCC-CCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCC
Q 015716 6 KEKKSSEERVKLFVGQVPK-HMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (402)
Q Consensus 6 ~~~~~~~~~~~l~V~nLp~-~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g 84 (402)
.......+.++|||+|||+ ++++++|+++|++||.|.+|++++++ +|||||+|.+.++|++|++.|++.. +.|
T Consensus 26 ~p~~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~-~~g 99 (229)
T 2adc_A 26 IPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHK-LHG 99 (229)
T ss_dssp CGGGGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCB-CSS
T ss_pred CCCCCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCe-ECC
Confidence 3445567889999999999 99999999999999999999999875 6899999999999999999997766 566
Q ss_pred CCCCccccccCccc------------------------------------ccccceEEEcCCCCCCcHHHHHHhhccCC-
Q 015716 85 ASSPLQVKYADGEL------------------------------------ERLEHKLFIGMLPKNVSEAEVSALFSIYG- 127 (402)
Q Consensus 85 ~~~~~~~~~~~~~~------------------------------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G- 127 (402)
+.|.+.++.... ....++|||+|||.++++++|+++|++||
T Consensus 100 --~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~ 177 (229)
T 2adc_A 100 --KPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGG 177 (229)
T ss_dssp --SBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSC
T ss_pred --eEEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCC
Confidence 777777664321 01257899999999999999999999999
Q ss_pred CeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccC-CCceeEEEEEcCC
Q 015716 128 TIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKME-GSSVPLVVKWADT 183 (402)
Q Consensus 128 ~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~-g~~~~l~v~~a~~ 183 (402)
.|.+++++.+ ++|||||+|.+.++|.+|++.|||.. ++ |+ .|.|.|+.+
T Consensus 178 ~i~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~-~~~g~--~l~v~~a~~ 227 (229)
T 2adc_A 178 VVKGFKFFQK----DRKMALIQMGSVEEAVQALIDLHNHD-LGENH--HLRVSFSKS 227 (229)
T ss_dssp CEEEEEECSS----STTCEEEEESSHHHHHHHHHHHTTCB-SSSSC--BCEEEECSS
T ss_pred CeeEEEEEEC----CCcEEEEEECCHHHHHHHHHHHCCCc-cCCCC--eEEEEEecC
Confidence 9999999653 37899999999999999999999988 55 55 589999875
No 17
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=1.9e-29 Score=232.46 Aligned_cols=162 Identities=21% Similarity=0.432 Sum_probs=139.3
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHH----HHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCC
Q 015716 9 KSSEERVKLFVGQVPKHMTEAQLL----AMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (402)
Q Consensus 9 ~~~~~~~~l~V~nLp~~~t~~~L~----~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g 84 (402)
.+..+.++|||+|||.++++++|+ ++|++||.|.+|++++ +++++|||||+|.+.++|++|++.||+.. +.|
T Consensus 4 ~~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g 79 (282)
T 3pgw_A 4 PETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFP-FYD 79 (282)
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCe-eCC
Confidence 356779999999999999999977 8999999999999886 57899999999999999999999997765 566
Q ss_pred CCCCccccccCcccc-----------------------------------------------------------------
Q 015716 85 ASSPLQVKYADGELE----------------------------------------------------------------- 99 (402)
Q Consensus 85 ~~~~~~~~~~~~~~~----------------------------------------------------------------- 99 (402)
+.|.+.++..+..
T Consensus 80 --~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (282)
T 3pgw_A 80 --KPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHM 157 (282)
T ss_pred --cEEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccC
Confidence 7777766543221
Q ss_pred -----------------------------------------------cccceEEEcCCCCCCcHHHHHHhhccCCCeeEE
Q 015716 100 -----------------------------------------------RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132 (402)
Q Consensus 100 -----------------------------------------------~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~ 132 (402)
...++|||+|||.++++++|+++|++||.|.+|
T Consensus 158 ~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v 237 (282)
T 3pgw_A 158 PGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEV 237 (282)
T ss_pred CCCCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEE
Confidence 124679999999999999999999999999999
Q ss_pred EEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEEcC
Q 015716 133 QILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWAD 182 (402)
Q Consensus 133 ~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~a~ 182 (402)
+++.+. +|||||+|.+.++|.+|++.|||..+..|+ .|.|.|++
T Consensus 238 ~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~--~l~v~~ak 281 (282)
T 3pgw_A 238 RLVPGR----HDIAFVEFDNEVQAGAARDALQGFKITQNN--AMKISFAK 281 (282)
T ss_pred EEecCC----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCC--EEEEEEec
Confidence 999763 589999999999999999999998743265 68999985
No 18
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.96 E-value=1.5e-29 Score=220.59 Aligned_cols=160 Identities=26% Similarity=0.444 Sum_probs=136.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhc----C-------CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCC
Q 015716 12 EERVKLFVGQVPKHMTEAQLLAMFKEF----A-------LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKK 80 (402)
Q Consensus 12 ~~~~~l~V~nLp~~~t~~~L~~~f~~~----G-------~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~ 80 (402)
...++|||+|||+++++++|+++|++| | .|.++++ ++++|||||+|.+.++|++|+ .|++..
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~ 74 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGII 74 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEE
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCE
Confidence 357999999999999999999999999 4 5555555 456799999999999999999 787665
Q ss_pred CCCCCCCCccccccCccc---------------------ccccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-
Q 015716 81 TLPGASSPLQVKYADGEL---------------------ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS- 138 (402)
Q Consensus 81 ~~~g~~~~~~~~~~~~~~---------------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~- 138 (402)
+.| +.+.+.++.... ....++|||+|||.++++++|+++|++||.|.++.+.++.
T Consensus 75 -~~g--~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~ 151 (198)
T 2yh0_A 75 -FQG--QSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSA 151 (198)
T ss_dssp -ETT--EEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTT
T ss_pred -EcC--ceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCC
Confidence 666 777777764331 1336899999999999999999999999999999999997
Q ss_pred CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEEcCCH
Q 015716 139 QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 184 (402)
Q Consensus 139 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~a~~~ 184 (402)
++.++|||||+|.+.++|.+|++.|||.. ++|+ .|.|.++.++
T Consensus 152 ~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g~--~l~v~~a~~~ 194 (198)
T 2yh0_A 152 TGLSKGYAFCEYVDINVTDQAIAGLNGMQ-LGDK--KLLVQRASVG 194 (198)
T ss_dssp TCSEEEEEEEEESSSSHHHHHHHHHTTCE-ETTE--ECEEEESCCC
T ss_pred CCCcceEEEEEECCHHHHHHHHHHcCCCE-ECCE--EEEEEECCCC
Confidence 89999999999999999999999999987 6665 6899998765
No 19
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.96 E-value=1e-28 Score=217.92 Aligned_cols=139 Identities=27% Similarity=0.466 Sum_probs=121.2
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEE
Q 015716 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (402)
Q Consensus 101 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~ 179 (402)
..++|||+|||+++|+++|+++|++||.|.+|+|++|. +++++|||||+|.+.++|.+|++.+|+.. +.|+ .|++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~-~~g~--~i~~~ 90 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDV-IKGK--PVRIM 90 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCE-ETTE--ECEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhh-cCCc--ccccc
Confidence 36799999999999999999999999999999999987 79999999999999999999999999987 6665 57787
Q ss_pred EcCCHHHHHHHHHHHHHhhcCCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCCCCCCcCCCCCCCCCCCCCCCCCCCCCC
Q 015716 180 WADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVN 259 (402)
Q Consensus 180 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 259 (402)
++.........
T Consensus 91 ~~~~~~~~~~~--------------------------------------------------------------------- 101 (213)
T 4f02_A 91 WSQRDPSLRKS--------------------------------------------------------------------- 101 (213)
T ss_dssp ECCCCTHHHHH---------------------------------------------------------------------
T ss_pred ccccccccccc---------------------------------------------------------------------
Confidence 77654332211
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCC
Q 015716 260 QGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTG 339 (402)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (402)
T Consensus 102 -------------------------------------------------------------------------------- 101 (213)
T 4f02_A 102 -------------------------------------------------------------------------------- 101 (213)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcccCCCCccEEEecCCCCCCHHHHHHHhhccCcEEEEEEEEeCCCCCcceEEEEEeecC
Q 015716 340 SGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGKYTVDLD 401 (402)
Q Consensus 340 ~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~fG~v~~~~i~~d~~tg~skG~gFV~f~~~ 401 (402)
..++|||+|||.++|+++|+++|++||.|++|+|++|+ +.+||||||+|.+.
T Consensus 102 --------~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~ 153 (213)
T 4f02_A 102 --------GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQ 153 (213)
T ss_dssp --------CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSH
T ss_pred --------ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCH
Confidence 23479999999999999999999999999999999995 56899999999863
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.96 E-value=2.9e-29 Score=232.43 Aligned_cols=165 Identities=19% Similarity=0.330 Sum_probs=141.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcC-CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCcc
Q 015716 12 EERVKLFVGQVPKHMTEAQLLAMFKEFA-LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (402)
Q Consensus 12 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G-~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~ 90 (402)
...++|||+|||.++++++|+++|++|| .|.+|+++.++. +.++|||||+|.+.++|++|++.|++.. +.| +.+.
T Consensus 115 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l~ 190 (292)
T 2ghp_A 115 LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLK-IEG--YTLV 190 (292)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCE-ETT--EECE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCE-eCC--cEEE
Confidence 4679999999999999999999999999 999999999886 8899999999999999999999998766 666 7888
Q ss_pred ccccCcccc--------cccceEEEcCCCCC-CcHHHHHHhhccCCCeeEEEEeeCCC--CCcceEEEEEeCCHHHHHHH
Q 015716 91 VKYADGELE--------RLEHKLFIGMLPKN-VSEAEVSALFSIYGTIKDLQILRGSQ--QTSKGCAFLKYETKEQALAA 159 (402)
Q Consensus 91 ~~~~~~~~~--------~~~~~l~v~nlp~~-~t~~~l~~~f~~~G~v~~~~i~~~~~--~~~~g~afV~f~~~~~A~~A 159 (402)
+.++.+... ...++|||+|||.+ +++++|+++|++||.|.+|+++++.. +.++|||||+|.+.++|.+|
T Consensus 191 v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A 270 (292)
T 2ghp_A 191 TKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERA 270 (292)
T ss_dssp EEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHH
T ss_pred EEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHH
Confidence 887764432 23579999999999 99999999999999999999999886 99999999999999999999
Q ss_pred HHHHcCCcccCCCceeEEEEEcCCH
Q 015716 160 LEAINGKHKMEGSSVPLVVKWADTE 184 (402)
Q Consensus 160 ~~~l~g~~~~~g~~~~l~v~~a~~~ 184 (402)
+ .|||.. ++|+ .|.|.|+.++
T Consensus 271 ~-~l~g~~-~~g~--~i~V~~a~~k 291 (292)
T 2ghp_A 271 L-QMNRSL-LGNR--EISVSLADKK 291 (292)
T ss_dssp G-GGTTEE-ETTE--EEEEEECCCC
T ss_pred H-HhcCCE-ECCc--EEEEEEecCC
Confidence 9 999987 6665 6999999865
No 21
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.96 E-value=5.4e-29 Score=217.24 Aligned_cols=156 Identities=21% Similarity=0.372 Sum_probs=135.4
Q ss_pred CCCeEEEcCCCC-CCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCccc
Q 015716 13 ERVKLFVGQVPK-HMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 91 (402)
Q Consensus 13 ~~~~l~V~nLp~-~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~~ 91 (402)
..++|||+|||+ ++++++|+++|++||.|.+|++++++ +|||||+|.+.++|++|++.|++.. +.| +.+.+
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~-~~g--~~l~v 73 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHK-LHG--KPIRI 73 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCC-CSS--CCCEE
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCe-ecC--eEEEE
Confidence 468999999999 99999999999999999999998875 6899999999999999999997766 566 77777
Q ss_pred cccCccc------------------------------------ccccceEEEcCCCCCCcHHHHHHhhccCC-CeeEEEE
Q 015716 92 KYADGEL------------------------------------ERLEHKLFIGMLPKNVSEAEVSALFSIYG-TIKDLQI 134 (402)
Q Consensus 92 ~~~~~~~------------------------------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G-~v~~~~i 134 (402)
.++.... ....++|||+|||.++++++|+++|++|| .|.++++
T Consensus 74 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i 153 (198)
T 1qm9_A 74 TLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKF 153 (198)
T ss_dssp EECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEE
T ss_pred EEecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEE
Confidence 6654321 11267899999999999999999999999 9999999
Q ss_pred eeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccC-CCceeEEEEEcCC
Q 015716 135 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKME-GSSVPLVVKWADT 183 (402)
Q Consensus 135 ~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~-g~~~~l~v~~a~~ 183 (402)
+.+ ++|+|||+|.+.++|.+|++.|||.. ++ |+ .|.|.|+.+
T Consensus 154 ~~~----~~g~afV~f~~~~~A~~A~~~l~g~~-~~~g~--~l~v~~a~~ 196 (198)
T 1qm9_A 154 FQK----DRKMALIQMGSVEEAVQALIDLHNHD-LGENH--HLRVSFSKS 196 (198)
T ss_dssp SST----TSSCEEEECSSHHHHHHHHHHHTSSC-CSSCC--SCCEEEECC
T ss_pred EeC----CCcEEEEEeCCHHHHHHHHHHhcCCc-cCCCC--eEEEEeecc
Confidence 764 27899999999999999999999988 55 65 588888865
No 22
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.96 E-value=5.7e-29 Score=212.44 Aligned_cols=141 Identities=28% Similarity=0.534 Sum_probs=124.8
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCC---CcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEE
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQ---TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v 178 (402)
.++|||+|||.++++++|+++|++||.|.+|+++++..+ .++|||||+|.+.++|++|++.|||..+.++..+.+.+
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~ 82 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQM 82 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEE
Confidence 578999999999999999999999999999999998854 79999999999999999999999998877777777888
Q ss_pred EEcCCHHHHHHHHHHHHHhhcCCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCCCCCCcCCCCCCCCCCCCCCCCCCCCC
Q 015716 179 KWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPV 258 (402)
Q Consensus 179 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 258 (402)
.++..+...
T Consensus 83 ~~~~~~~~~----------------------------------------------------------------------- 91 (175)
T 3nmr_A 83 KPADSEKNN----------------------------------------------------------------------- 91 (175)
T ss_dssp EECGGGCCS-----------------------------------------------------------------------
T ss_pred ccccccccc-----------------------------------------------------------------------
Confidence 776532100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCC
Q 015716 259 NQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGT 338 (402)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (402)
T Consensus 92 -------------------------------------------------------------------------------- 91 (175)
T 3nmr_A 92 -------------------------------------------------------------------------------- 91 (175)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccCCCCccEEEecCCCCCCHHHHHHHhhccCcEEEEEEEEeCCCCCcceEEEEEeecC
Q 015716 339 GSGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGKYTVDLD 401 (402)
Q Consensus 339 ~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~fG~v~~~~i~~d~~tg~skG~gFV~f~~~ 401 (402)
....++|||+|||.++|+++|+++|++||.|.+++|++++ +|++||||||+|.++
T Consensus 92 -------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~ 146 (175)
T 3nmr_A 92 -------AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTR 146 (175)
T ss_dssp -------CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSH
T ss_pred -------cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCH
Confidence 0135689999999999999999999999999999999997 799999999999874
No 23
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.96 E-value=2.8e-28 Score=215.52 Aligned_cols=150 Identities=25% Similarity=0.416 Sum_probs=125.7
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEE
Q 015716 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (402)
Q Consensus 101 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~ 179 (402)
..++|||+|||.++++++|+++|+.||.|.+|+++++. ++.++|||||+|.+.++|.+|++.|||.. ++|+ .|.|.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~-~~g~--~l~v~ 103 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVM-LGGR--NIKVG 103 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCC-CC-C--CCEEE
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCe-eCCe--eEEEe
Confidence 36799999999999999999999999999999999887 78899999999999999999999999987 6665 48888
Q ss_pred EcCCHHHHHHHHHHHHHhhcCCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCCCCCCcCCCCCCCCCCCCCCCCCCCCCC
Q 015716 180 WADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVN 259 (402)
Q Consensus 180 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 259 (402)
++................
T Consensus 104 ~~~~~~~~~~~~~~~~~~-------------------------------------------------------------- 121 (216)
T 2qfj_A 104 RPSNIGQAQPIIDQLAEE-------------------------------------------------------------- 121 (216)
T ss_dssp CCSCCGGGHHHHHHHHHH--------------------------------------------------------------
T ss_pred cCCCccccchhhhhhhcc--------------------------------------------------------------
Confidence 877654332221111110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCC
Q 015716 260 QGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTG 339 (402)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (402)
T Consensus 122 -------------------------------------------------------------------------------- 121 (216)
T 2qfj_A 122 -------------------------------------------------------------------------------- 121 (216)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcccCCCCccEEEecCCCCCCHHHHHHHhhccCcEEEEEEEEeCCCCCcceEEEEEeecC
Q 015716 340 SGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGKYTVDLD 401 (402)
Q Consensus 340 ~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~fG~v~~~~i~~d~~tg~skG~gFV~f~~~ 401 (402)
....++|||+|||.++++++|+++|++||.|++|+|+.++.+|++||||||+|.+.
T Consensus 122 ------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~ 177 (216)
T 2qfj_A 122 ------ARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKA 177 (216)
T ss_dssp ------HTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred ------cCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCH
Confidence 01356899999999999999999999999999999999999999999999999863
No 24
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.96 E-value=2.3e-28 Score=212.70 Aligned_cols=146 Identities=23% Similarity=0.398 Sum_probs=122.9
Q ss_pred ccccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEE
Q 015716 99 ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLV 177 (402)
Q Consensus 99 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~ 177 (402)
....++|||+|||.++++++|+++|+.||.|.+|.++++. ++.++|||||+|.+.++|.+|++. ++.. ++|+ .|.
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~-~~g~--~l~ 85 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHK-VDGR--VVE 85 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCE-ETTE--ECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCE-ECCE--Eee
Confidence 3447899999999999999999999999999999999987 688999999999999999999976 7766 6665 588
Q ss_pred EEEcCCHHHHHHHHHHHHHhhcCCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCCCCCCcCCCCCCCCCCCCCCCCCCCC
Q 015716 178 VKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPP 257 (402)
Q Consensus 178 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 257 (402)
|.++.........
T Consensus 86 v~~~~~~~~~~~~------------------------------------------------------------------- 98 (196)
T 1l3k_A 86 PKRAVSREDSQRP------------------------------------------------------------------- 98 (196)
T ss_dssp EEECCC--------------------------------------------------------------------------
T ss_pred eecccCccccccc-------------------------------------------------------------------
Confidence 8888764321100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCC
Q 015716 258 VNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGG 337 (402)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (402)
T Consensus 99 -------------------------------------------------------------------------------- 98 (196)
T 1l3k_A 99 -------------------------------------------------------------------------------- 98 (196)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcccCCCCccEEEecCCCCCCHHHHHHHhhccCcEEEEEEEEeCCCCCcceEEEEEeecC
Q 015716 338 TGSGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGKYTVDLD 401 (402)
Q Consensus 338 ~~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~fG~v~~~~i~~d~~tg~skG~gFV~f~~~ 401 (402)
......++|||+|||.++|+++|+++|++||.|++|+|++|+.+|++||||||.|.++
T Consensus 99 ------~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~ 156 (196)
T 1l3k_A 99 ------GAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDH 156 (196)
T ss_dssp ----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred ------ccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCH
Confidence 0001346899999999999999999999999999999999999999999999999874
No 25
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=5.5e-29 Score=210.54 Aligned_cols=139 Identities=27% Similarity=0.474 Sum_probs=122.5
Q ss_pred ceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEEcC
Q 015716 103 HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWAD 182 (402)
Q Consensus 103 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~a~ 182 (402)
++|||+|||.++++++|+++|++||.|.++.+++++++.++|||||+|.+.++|.+|++.|||.. +.|+ .|.|.++.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~-~~g~--~i~v~~~~ 77 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQ-IENN--IVKINWAF 77 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCE-ETTE--ECEEEECC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCc-cCCC--eeEEEEcC
Confidence 58999999999999999999999999999999999989999999999999999999999999988 5554 57888764
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCC
Q 015716 183 TEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGN 262 (402)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 262 (402)
....
T Consensus 78 ~~~~---------------------------------------------------------------------------- 81 (166)
T 3md3_A 78 QSQQ---------------------------------------------------------------------------- 81 (166)
T ss_dssp CCCC----------------------------------------------------------------------------
T ss_pred CCCC----------------------------------------------------------------------------
Confidence 3210
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCC
Q 015716 263 AMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSGG 342 (402)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (402)
T Consensus 82 -------------------------------------------------------------------------------- 81 (166)
T 3md3_A 82 -------------------------------------------------------------------------------- 81 (166)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCccEEEecCCCCCCHHHHHHHhhccCcEEEEEEEEeCCCCCcceEEEEEeecC
Q 015716 343 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGKYTVDLD 401 (402)
Q Consensus 343 ~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~fG~v~~~~i~~d~~tg~skG~gFV~f~~~ 401 (402)
......++|||+|||.++++++|+++|++||.|.+++|++|+.+|++||||||+|.++
T Consensus 82 -~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~ 139 (166)
T 3md3_A 82 -SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQ 139 (166)
T ss_dssp -CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCH
T ss_pred -CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCH
Confidence 0012466899999999999999999999999999999999999999999999999864
No 26
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.96 E-value=3.2e-28 Score=206.02 Aligned_cols=138 Identities=27% Similarity=0.542 Sum_probs=123.6
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEE
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~ 180 (402)
+++|||+|||.++++++|+++|+.||.|.++.++++. ++.++|||||+|.+.++|.+|++.|||.. +.|+ .|.|.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~-~~g~--~l~v~~ 78 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLR-LQTK--TIKVSY 78 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCE-ETTE--ECEEEE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCc-cCCc--eEEEEe
Confidence 5789999999999999999999999999999999988 89999999999999999999999999987 5654 588887
Q ss_pred cCCHHHHHHHHHHHHHhhcCCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCC
Q 015716 181 ADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQ 260 (402)
Q Consensus 181 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 260 (402)
+.+...
T Consensus 79 ~~~~~~-------------------------------------------------------------------------- 84 (167)
T 1fxl_A 79 ARPSSA-------------------------------------------------------------------------- 84 (167)
T ss_dssp CCCCCG--------------------------------------------------------------------------
T ss_pred cCCCcc--------------------------------------------------------------------------
Confidence 753210
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCC
Q 015716 261 GNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGS 340 (402)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (402)
T Consensus 85 -------------------------------------------------------------------------------- 84 (167)
T 1fxl_A 85 -------------------------------------------------------------------------------- 84 (167)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccCCCCccEEEecCCCCCCHHHHHHHhhccCcEEEEEEEEeCCCCCcceEEEEEeecC
Q 015716 341 GGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGKYTVDLD 401 (402)
Q Consensus 341 ~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~fG~v~~~~i~~d~~tg~skG~gFV~f~~~ 401 (402)
....++|||+|||.++++++|+++|++||.|.+++|+.++.+|+++|||||+|++.
T Consensus 85 -----~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~ 140 (167)
T 1fxl_A 85 -----SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKR 140 (167)
T ss_dssp -----GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred -----cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCH
Confidence 01345799999999999999999999999999999999998999999999999874
No 27
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.96 E-value=2.7e-28 Score=206.88 Aligned_cols=138 Identities=24% Similarity=0.463 Sum_probs=123.4
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEE
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~ 180 (402)
.++|||+|||.++++++|+++|+.||.|.+++++++. ++.++|||||+|.+.++|++|++.|+|.. ++|+ .|.|.+
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~-~~g~--~l~v~~ 79 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGIT-VRNK--RLKVSY 79 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCE-ETTE--ECEEEE
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCE-eCCc--EEEEEe
Confidence 5789999999999999999999999999999999886 78899999999999999999999999987 5654 588888
Q ss_pred cCCHHHHHHHHHHHHHhhcCCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCC
Q 015716 181 ADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQ 260 (402)
Q Consensus 181 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 260 (402)
+.++..
T Consensus 80 ~~~~~~-------------------------------------------------------------------------- 85 (168)
T 1b7f_A 80 ARPGGE-------------------------------------------------------------------------- 85 (168)
T ss_dssp CCCCSS--------------------------------------------------------------------------
T ss_pred cCCCcc--------------------------------------------------------------------------
Confidence 753210
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCC
Q 015716 261 GNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGS 340 (402)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (402)
T Consensus 86 -------------------------------------------------------------------------------- 85 (168)
T 1b7f_A 86 -------------------------------------------------------------------------------- 85 (168)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccCCCCccEEEecCCCCCCHHHHHHHhhccCcEEEEEEEEeCCCCCcceEEEEEeecC
Q 015716 341 GGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGKYTVDLD 401 (402)
Q Consensus 341 ~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~fG~v~~~~i~~d~~tg~skG~gFV~f~~~ 401 (402)
....++|||+|||.++++++|+++|++||.|.+++|+.++.+|++||||||+|++.
T Consensus 86 -----~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~ 141 (168)
T 1b7f_A 86 -----SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKR 141 (168)
T ss_dssp -----TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred -----cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCH
Confidence 01356899999999999999999999999999999999998999999999999863
No 28
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.95 E-value=2.9e-28 Score=206.52 Aligned_cols=136 Identities=27% Similarity=0.479 Sum_probs=120.2
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEE
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~ 180 (402)
.++|||+|||.++++++|+++|++||.|.+|+++++. ++.++|||||+|.+.++|++|++. +.. ++|+ .|.|.+
T Consensus 3 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~-~~g~--~i~v~~ 77 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHI-LDGK--VIDPKR 77 (167)
T ss_dssp GGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCE-ETTE--ECCCEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccc-cCCe--Eccccc
Confidence 5799999999999999999999999999999999986 799999999999999999999984 333 6665 477777
Q ss_pred cCCHHHHHHHHHHHHHhhcCCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCC
Q 015716 181 ADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQ 260 (402)
Q Consensus 181 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 260 (402)
+..+....
T Consensus 78 ~~~~~~~~------------------------------------------------------------------------ 85 (167)
T 2cjk_A 78 AIPRDEQD------------------------------------------------------------------------ 85 (167)
T ss_dssp CCCHHHHH------------------------------------------------------------------------
T ss_pred ccchhhcc------------------------------------------------------------------------
Confidence 77653221
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCC
Q 015716 261 GNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGS 340 (402)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (402)
T Consensus 86 -------------------------------------------------------------------------------- 85 (167)
T 2cjk_A 86 -------------------------------------------------------------------------------- 85 (167)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccCCCCccEEEecCCCCCCHHHHHHHhhccCcEEEEEEEEeCCCCCcceEEEEEeecC
Q 015716 341 GGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGKYTVDLD 401 (402)
Q Consensus 341 ~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~fG~v~~~~i~~d~~tg~skG~gFV~f~~~ 401 (402)
..++|||+|||.++++++|+++|++||.|++++|+.|+.+|++||||||+|.++
T Consensus 86 -------~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~ 139 (167)
T 2cjk_A 86 -------KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSA 139 (167)
T ss_dssp -------HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSH
T ss_pred -------CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCH
Confidence 234799999999999999999999999999999999998999999999999874
No 29
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.95 E-value=9.5e-26 Score=207.68 Aligned_cols=81 Identities=27% Similarity=0.530 Sum_probs=71.8
Q ss_pred cccceEEEcCCCCCCcHHHHH----HhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCcee
Q 015716 100 RLEHKLFIGMLPKNVSEAEVS----ALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVP 175 (402)
Q Consensus 100 ~~~~~l~v~nlp~~~t~~~l~----~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~ 175 (402)
+..++|||+|||.++++++|+ ++|++||.|.+|++++ +++++|||||+|.+.++|.+|++.|||.. +.|+ .
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g~--~ 81 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFP-FYDK--P 81 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC--CCCcceEEEEEECCHHHHHHHHHHhcCCe-eCCc--E
Confidence 347899999999999999977 8999999999999986 67889999999999999999999999987 6665 5
Q ss_pred EEEEEcCCHH
Q 015716 176 LVVKWADTEK 185 (402)
Q Consensus 176 l~v~~a~~~~ 185 (402)
|.|.|+..+.
T Consensus 82 l~v~~a~~~~ 91 (282)
T 3pgw_A 82 MRIQYAKTDS 91 (282)
T ss_pred EEEEEeccCc
Confidence 8888886654
No 30
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.94 E-value=3.2e-26 Score=194.84 Aligned_cols=132 Identities=23% Similarity=0.430 Sum_probs=113.4
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccC----C-------CeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccC
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFSIY----G-------TIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKME 170 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~~~----G-------~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~ 170 (402)
.++|||+|||.++++++|+++|++| | .|.++.+.+ ++|||||+|.+.++|.+|+ .+||.. +.
T Consensus 4 ~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~-----~~g~afV~f~~~~~A~~A~-~~~~~~-~~ 76 (172)
T 2g4b_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-----DKNFAFLEFRSVDETTQAM-AFDGII-FQ 76 (172)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET-----TTTEEEEEESSHHHHHHHG-GGTTCE-ET
T ss_pred ccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC-----CCCEEEEEeCCHHHHHHHH-HhCCcE-ec
Confidence 6899999999999999999999999 6 777777765 4899999999999999999 899987 66
Q ss_pred CCceeEEEEEcCCHHHHHHHHHHHHHhhcCCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCCCCCCcCCCCCCCCCCCCC
Q 015716 171 GSSVPLVVKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPG 250 (402)
Q Consensus 171 g~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 250 (402)
|+ .|.|.++....
T Consensus 77 g~--~i~v~~~~~~~----------------------------------------------------------------- 89 (172)
T 2g4b_A 77 GQ--SLKIRRPHDYQ----------------------------------------------------------------- 89 (172)
T ss_dssp TE--ECEEECCSSCC-----------------------------------------------------------------
T ss_pred Cc--eeeecCCcccC-----------------------------------------------------------------
Confidence 65 47776543210
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCC
Q 015716 251 FHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNP 330 (402)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (402)
T Consensus 90 -------------------------------------------------------------------------------- 89 (172)
T 2g4b_A 90 -------------------------------------------------------------------------------- 89 (172)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCcccCCCCccEEEecCCCCCCHHHHHHHhhccCcEEEEEEEEeCCCCCcceEEEEEeecC
Q 015716 331 STSSSGGTGSGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGKYTVDLD 401 (402)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~fG~v~~~~i~~d~~tg~skG~gFV~f~~~ 401 (402)
.....++|||+|||.++++++|+++|++||.|.+++|++++.+|++||||||+|.++
T Consensus 90 --------------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~ 146 (172)
T 2g4b_A 90 --------------PLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDI 146 (172)
T ss_dssp --------------CCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESST
T ss_pred --------------CCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCH
Confidence 001245799999999999999999999999999999999998999999999999875
No 31
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.93 E-value=4.2e-26 Score=199.24 Aligned_cols=75 Identities=17% Similarity=0.304 Sum_probs=68.1
Q ss_pred cceEEEcCCC-CCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEE
Q 015716 102 EHKLFIGMLP-KNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (402)
Q Consensus 102 ~~~l~v~nlp-~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~ 180 (402)
.++|||+||| +.+++++|+++|++||.|.+|+++++ ++|||||+|.+.++|++|++.|||.. +.|+ .|.|.+
T Consensus 4 ~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~lng~~-~~g~--~l~v~~ 76 (205)
T 3tyt_A 4 SPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS----KPGAAMVEMADGYAVDRAITHLNNNF-MFGQ--KMNVCV 76 (205)
T ss_dssp CSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT----STTCEEEEESSHHHHHHHHHHHTTCE-ETTE--ECEEEE
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC----CCCEEEEEECCHHHHHHHHHHhCCCE-ECCc--eEEEEE
Confidence 5799999999 89999999999999999999999876 37999999999999999999999988 6665 588998
Q ss_pred cCC
Q 015716 181 ADT 183 (402)
Q Consensus 181 a~~ 183 (402)
+..
T Consensus 77 s~~ 79 (205)
T 3tyt_A 77 SKQ 79 (205)
T ss_dssp CSC
T ss_pred ccC
Confidence 864
No 32
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.93 E-value=1.6e-25 Score=203.74 Aligned_cols=128 Identities=28% Similarity=0.491 Sum_probs=115.6
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEE
Q 015716 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (402)
Q Consensus 100 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~ 179 (402)
...++|||+|||.++|+++|+++|++||.|.+|.+.++ +|||||+|.+.++|.+|+..|||.. +.|+ .|.|.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----kg~afV~f~~~~~A~~A~~~l~g~~-i~g~--~l~v~ 91 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD-----RGFGFIRLESRTLAEIAKAELDGTI-LKSR--PLRIR 91 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT-----TTEEEEECSSHHHHHHHHHHHTTCE-ETTE--ECEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CcEEEEEECCHHHHHHHHHHcCCcE-ECCc--eeEee
Confidence 44689999999999999999999999999999999764 8999999999999999999999987 5664 57887
Q ss_pred EcCCHHHHHHHHHHHHHhhcCCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCCCCCCcCCCCCCCCCCCCCCCCCCCCCC
Q 015716 180 WADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVN 259 (402)
Q Consensus 180 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 259 (402)
++.
T Consensus 92 ~a~----------------------------------------------------------------------------- 94 (261)
T 3sde_A 92 FAT----------------------------------------------------------------------------- 94 (261)
T ss_dssp ECC-----------------------------------------------------------------------------
T ss_pred ecc-----------------------------------------------------------------------------
Confidence 753
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCC
Q 015716 260 QGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTG 339 (402)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (402)
T Consensus 95 -------------------------------------------------------------------------------- 94 (261)
T 3sde_A 95 -------------------------------------------------------------------------------- 94 (261)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcccCCCCccEEEecCCCCCCHHHHHHHhhccCcEEEEEEEEeCCCCCcceEEEEEeecC
Q 015716 340 SGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGKYTVDLD 401 (402)
Q Consensus 340 ~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~fG~v~~~~i~~d~~tg~skG~gFV~f~~~ 401 (402)
.+++|||+|||.++|+++|+++|++||.|.+|+|+.|+ +|+++|||||+|.+.
T Consensus 95 --------~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~ 147 (261)
T 3sde_A 95 --------HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD-RGRATGKGFVEFAAK 147 (261)
T ss_dssp --------CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TSCEEEEEEEEESSH
T ss_pred --------cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC-CCCcCcEEEEEeCCH
Confidence 13369999999999999999999999999999999995 999999999999863
No 33
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.93 E-value=3.8e-25 Score=192.64 Aligned_cols=152 Identities=22% Similarity=0.399 Sum_probs=115.4
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccC----C-------CeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccC
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFSIY----G-------TIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKME 170 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~~~----G-------~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~ 170 (402)
.++|||+|||.++++++|+++|++| | .|.++.+. .++|||||+|.+.++|++|+ .|||.. +.
T Consensus 4 ~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~-----~~~g~afV~F~~~~~A~~Al-~l~g~~-~~ 76 (198)
T 2yh0_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-----QDKNFAFLEFRSVDETTQAM-AFDGII-FQ 76 (198)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE-----TTTTEEEEEESCSHHHHHHG-GGTTEE-ET
T ss_pred eeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec-----CCCCEEEEEeCCHHHHHHHH-HhcCCE-Ec
Confidence 5799999999999999999999999 4 56666554 45899999999999999999 899987 66
Q ss_pred CCceeEEEEEcCCHHHHHHHHHHHHHhhcCCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCCCCCCcCCCCCCCCCCCCC
Q 015716 171 GSSVPLVVKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPG 250 (402)
Q Consensus 171 g~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 250 (402)
|+ .|.|.++....... .. ..
T Consensus 77 g~--~i~v~~~~~~~~~~---------------~~-~~------------------------------------------ 96 (198)
T 2yh0_A 77 GQ--SLKIRRPHDYQPLP---------------GM-SE------------------------------------------ 96 (198)
T ss_dssp TE--EEEEECCCCCCCCC---------------CS-SS------------------------------------------
T ss_pred Cc--eEEEeCCCCCCCCC---------------CC-cC------------------------------------------
Confidence 65 58887765421000 00 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCC
Q 015716 251 FHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNP 330 (402)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (402)
. .... .++.
T Consensus 97 -----------------~---------~~~~-------------~~~~-------------------------------- 105 (198)
T 2yh0_A 97 -----------------N---------PSVY-------------VPGV-------------------------------- 105 (198)
T ss_dssp -----------------C---------SSCC-------------CTTS--------------------------------
T ss_pred -----------------C---------CcCC-------------CCCC--------------------------------
Confidence 0 0000 0000
Q ss_pred CCCCCCCCCCCCcccCCCCccEEEecCCCCCCHHHHHHHhhccCcEEEEEEEEeCCCCCcceEEEEEeecC
Q 015716 331 STSSSGGTGSGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGKYTVDLD 401 (402)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~fG~v~~~~i~~d~~tg~skG~gFV~f~~~ 401 (402)
.........++|||+|||.++++++|+++|++||.|.+|+|++++.+|+++|||||+|.++
T Consensus 106 ----------~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~ 166 (198)
T 2yh0_A 106 ----------VSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDI 166 (198)
T ss_dssp ----------SCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSS
T ss_pred ----------ccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCH
Confidence 0000113567999999999999999999999999999999999998999999999999875
No 34
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.92 E-value=6.2e-26 Score=193.70 Aligned_cols=82 Identities=23% Similarity=0.308 Sum_probs=68.2
Q ss_pred ccccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEE
Q 015716 99 ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (402)
Q Consensus 99 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v 178 (402)
....++|||+|||.++++++|+++|+.||.+..+.+....++.++|||||+|.+.++|.+|+ .|||.. +.|+ .|.|
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~-~~g~--~l~v 85 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLK-VFGN--EIKL 85 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEE-ETTE--EEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCE-eCCe--EEEE
Confidence 34478999999999999999999999999877644444447888999999999999999999 599987 5654 6888
Q ss_pred EEcCCH
Q 015716 179 KWADTE 184 (402)
Q Consensus 179 ~~a~~~ 184 (402)
.++..+
T Consensus 86 ~~~~~~ 91 (175)
T 1fje_B 86 EKPKGR 91 (175)
T ss_dssp ECCCCS
T ss_pred ecCCCc
Confidence 887653
No 35
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.90 E-value=6.8e-23 Score=182.62 Aligned_cols=78 Identities=23% Similarity=0.435 Sum_probs=69.8
Q ss_pred cccceEEEcCCCC-CCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEE
Q 015716 100 RLEHKLFIGMLPK-NVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (402)
Q Consensus 100 ~~~~~l~v~nlp~-~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v 178 (402)
...++|||+|||. ++++++|+++|++||.|.+|+++++. +|||||+|.+.++|++|++.|||.. +.|+ .|.|
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~----~g~afV~F~~~~~A~~Ai~~l~g~~-~~g~--~l~v 104 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHK-LHGK--PIRI 104 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT----SCCEEEEESCHHHHHHHHHHHTTCB-CSSS--BCEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC----CCEEEEEECCHHHHHHHHHHhCCCe-ECCe--EEEE
Confidence 3478999999999 99999999999999999999999874 7899999999999999999999987 6665 5888
Q ss_pred EEcCCH
Q 015716 179 KWADTE 184 (402)
Q Consensus 179 ~~a~~~ 184 (402)
.++..+
T Consensus 105 ~~a~~~ 110 (229)
T 2adc_A 105 TLSKHQ 110 (229)
T ss_dssp ECCSCC
T ss_pred EEecCc
Confidence 887643
No 36
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.90 E-value=5e-23 Score=179.31 Aligned_cols=76 Identities=24% Similarity=0.468 Sum_probs=68.7
Q ss_pred cceEEEcCCCC-CCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEE
Q 015716 102 EHKLFIGMLPK-NVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (402)
Q Consensus 102 ~~~l~v~nlp~-~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~ 180 (402)
.++|||+|||. ++++++|+++|++||.|.+|+++++. +|||||+|.+.++|++|++.|||.. +.|+ .|.|.+
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~----~g~afV~f~~~~~a~~A~~~l~~~~-~~g~--~l~v~~ 75 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHK-LHGK--PIRITL 75 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC----SSCCEEECTTTHHHHHHHHHHTTCC-CSSC--CCEEEE
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCe-ecCe--EEEEEE
Confidence 47899999999 99999999999999999999999874 7899999999999999999999987 6665 588888
Q ss_pred cCCH
Q 015716 181 ADTE 184 (402)
Q Consensus 181 a~~~ 184 (402)
+..+
T Consensus 76 a~~~ 79 (198)
T 1qm9_A 76 SKHQ 79 (198)
T ss_dssp CCCC
T ss_pred ecCC
Confidence 8754
No 37
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.88 E-value=1.5e-22 Score=169.68 Aligned_cols=137 Identities=20% Similarity=0.279 Sum_probs=108.7
Q ss_pred EEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCC----CCcccc-------ccCcccccccceEEEcCCC
Q 015716 43 EVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS----SPLQVK-------YADGELERLEHKLFIGMLP 111 (402)
Q Consensus 43 ~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~----~~~~~~-------~~~~~~~~~~~~l~v~nlp 111 (402)
.++|+++.. +++|||||+|.+.++|++|++.+++...+.+.. ...... ..........++|||+|||
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 577888864 699999999999999999998886543332210 000000 0111122336899999999
Q ss_pred CCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEEcCCH
Q 015716 112 KNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 184 (402)
Q Consensus 112 ~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~a~~~ 184 (402)
+++++++|+++|++||.|.+|+|+++. ++.++|||||+|.+.++|.+|++.|||.. ++|+ .|.|.++.++
T Consensus 80 ~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g~--~l~v~~a~~~ 150 (158)
T 2kn4_A 80 YRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAV-LDGR--ELRVQMARYG 150 (158)
T ss_dssp TTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEE-SSSS--EEEEEEECCS
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCE-ECCe--EEEEEECCCC
Confidence 999999999999999999999999986 89999999999999999999999999987 6765 5899998765
No 38
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.87 E-value=2.4e-22 Score=158.92 Aligned_cols=102 Identities=18% Similarity=0.269 Sum_probs=71.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCccc
Q 015716 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 91 (402)
Q Consensus 12 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~~ 91 (402)
...++|||+|||+++|+++|+++|++||.|.+|+|++|+ +.++|||||+|.+.++|++||+.|++.. +.| +.|.|
T Consensus 3 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~-~~g--~~i~V 77 (115)
T 4f25_A 3 LGSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGML-LND--RKVFV 77 (115)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCE-ETT--EECEE
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCE-ECC--EEEEE
Confidence 346789999999999999999999999999999999986 4589999999999999999999997766 666 78888
Q ss_pred cccCcccccc---------cceEEEcCCCCCCcHHH
Q 015716 92 KYADGELERL---------EHKLFIGMLPKNVSEAE 118 (402)
Q Consensus 92 ~~~~~~~~~~---------~~~l~v~nlp~~~t~~~ 118 (402)
.++..+..+. ..+|||+|||+++|++.
T Consensus 78 ~~a~~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 78 GRFKSRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp EESSCCCC----------------------------
T ss_pred EECCCccccccccccccCCCCceEeCCCCCCccccc
Confidence 7765543322 45799999999999863
No 39
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.85 E-value=1e-21 Score=155.31 Aligned_cols=81 Identities=28% Similarity=0.464 Sum_probs=72.5
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEEc
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~a 181 (402)
..+|||+|||+++++++|+++|++||.|.+|+|+++. +.++|||||+|.+.++|++|++.|||.. ++|+ .|.|.++
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~-~~~kg~afV~f~~~~~A~~Ai~~l~~~~-~~g~--~i~V~~a 80 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NGSKGYGFVHFETQEAAERAIEKMNGML-LNDR--KVFVGRF 80 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TEEEEEEEEEESCHHHHHHHHHHHTTCE-ETTE--ECEEEES
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC-CCCCceEEEEECCHHHHHHHHHHcCCCE-ECCE--EEEEEEC
Confidence 4689999999999999999999999999999999986 4479999999999999999999999987 6665 6899998
Q ss_pred CCHHH
Q 015716 182 DTEKE 186 (402)
Q Consensus 182 ~~~~~ 186 (402)
.++..
T Consensus 81 ~~~~~ 85 (115)
T 4f25_A 81 KSRKE 85 (115)
T ss_dssp SCCCC
T ss_pred CCccc
Confidence 76543
No 40
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.83 E-value=1.1e-20 Score=144.80 Aligned_cols=83 Identities=27% Similarity=0.456 Sum_probs=76.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCcc
Q 015716 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (402)
Q Consensus 11 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~ 90 (402)
..+.++|||+|||+++|+++|+++|++||+|.+|++++|+.+++++|||||+|.+.++|++|++.||+.. +.| +.|.
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~-~~g--r~l~ 92 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLR-LQS--KTIK 92 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCE-ETT--EECE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCE-ECC--EEEE
Confidence 4467899999999999999999999999999999999999999999999999999999999999998776 666 8898
Q ss_pred ccccCc
Q 015716 91 VKYADG 96 (402)
Q Consensus 91 ~~~~~~ 96 (402)
|.++++
T Consensus 93 V~~AkP 98 (99)
T 4fxv_A 93 VSYARP 98 (99)
T ss_dssp EEECCB
T ss_pred EEEeeC
Confidence 888764
No 41
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.81 E-value=9.3e-20 Score=151.21 Aligned_cols=127 Identities=20% Similarity=0.390 Sum_probs=104.2
Q ss_pred EEeeCCCCCCcccEEEEEeCCHHHHHHHHHHh-cCCCCCCCCCCCccccccCc-----------------ccccccceEE
Q 015716 45 NIIKDKTTRASRGCCFVICPSRQEADKAVNAC-HNKKTLPGASSPLQVKYADG-----------------ELERLEHKLF 106 (402)
Q Consensus 45 ~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l-~~~~~~~g~~~~~~~~~~~~-----------------~~~~~~~~l~ 106 (402)
.+..+. .+.+|+++|+|.+.++|++|++.+ ++.. +.| .+.+.++.. ......++||
T Consensus 4 al~l~g--~~l~G~~~ve~~~~~~A~~a~~~~~ng~~-~~G---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 77 (150)
T 2i2y_A 4 KLILNG--KTLKGETTTEAVDAATAEKVFKQYANDNG-VDG---EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVY 77 (150)
T ss_dssp EEEECC--SSSCEEEEEECSSHHHHTTTHHHHHHHHT-CCC---EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEE
T ss_pred Eeeecc--ccccccceeeecCHHHHHHHHHHHhcCCC-CCC---ceecccccCccccccccccccccccccCCCCCCEEE
Confidence 344443 467899999999999999999999 6554 555 455544432 1223368999
Q ss_pred EcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEEcCCH
Q 015716 107 IGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 184 (402)
Q Consensus 107 v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~a~~~ 184 (402)
|+|||+++++++|+++|++||.|.+|+++++ ++|||||+|.+.++|.+|++.|||.. ++|+ .|.|.|+.++
T Consensus 78 V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~-~~g~--~l~v~~a~~~ 148 (150)
T 2i2y_A 78 VGNLGNNGNKTELERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRT-LCGC--RVRVELSNGE 148 (150)
T ss_dssp EESCCSCCSCHHHHHHHHHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSC-SSSS--CCEEEECCCC
T ss_pred EeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCE-ECCe--EEEEEEcCCC
Confidence 9999999999999999999999999999987 58999999999999999999999987 6665 5899998764
No 42
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.81 E-value=1.6e-20 Score=141.73 Aligned_cols=85 Identities=20% Similarity=0.352 Sum_probs=76.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcC-CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCcccc
Q 015716 14 RVKLFVGQVPKHMTEAQLLAMFKEFA-LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVK 92 (402)
Q Consensus 14 ~~~l~V~nLp~~~t~~~L~~~f~~~G-~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~~~ 92 (402)
+++|||+|||+++|+++|+++|++|| +|.+|+|++|+.|++++|||||+|.+.++|++|++.+++...+.| +.|.+.
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~g--r~i~V~ 78 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILG--QKVSMH 78 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETT--EEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECC--EEEEEE
Confidence 47899999999999999999999999 899999999999999999999999999999999998866655777 889999
Q ss_pred ccCccccc
Q 015716 93 YADGELER 100 (402)
Q Consensus 93 ~~~~~~~~ 100 (402)
++.++...
T Consensus 79 ~a~~~~~~ 86 (91)
T 2lxi_A 79 YSDPKPKI 86 (91)
T ss_dssp CCCSCCCC
T ss_pred EcCCCCCC
Confidence 88766543
No 43
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.79 E-value=2e-19 Score=140.56 Aligned_cols=84 Identities=19% Similarity=0.243 Sum_probs=76.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCcc
Q 015716 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (402)
Q Consensus 11 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~ 90 (402)
..+.++|||+|||+++++++|+++|++||.|.+|+|++|+.|++++|||||+|.+.++|++||+.||+.. +.| +.|.
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~-~~g--r~i~ 79 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTS-VMG--NIIH 79 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCE-ETT--EECE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCE-ECC--eEEE
Confidence 4578899999999999999999999999999999999999999999999999999999999999997776 666 7888
Q ss_pred ccccCcc
Q 015716 91 VKYADGE 97 (402)
Q Consensus 91 ~~~~~~~ 97 (402)
|.++...
T Consensus 80 V~~a~~~ 86 (110)
T 3s8s_A 80 AQLDIKG 86 (110)
T ss_dssp EEECSTT
T ss_pred EEECCCC
Confidence 8877543
No 44
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.79 E-value=4.7e-19 Score=137.86 Aligned_cols=94 Identities=38% Similarity=0.676 Sum_probs=84.6
Q ss_pred ccccCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCC
Q 015716 6 KEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGA 85 (402)
Q Consensus 6 ~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~ 85 (402)
.......+.++|||+|||.++++++|+++|++||.|.+|+++.++.+++++|||||+|.+.++|++|++.||+..++.+.
T Consensus 5 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~ 84 (106)
T 2dgp_A 5 SSGMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGM 84 (106)
T ss_dssp CCSCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTC
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCC
Confidence 34556778899999999999999999999999999999999999999999999999999999999999999888877666
Q ss_pred CCCccccccCcccc
Q 015716 86 SSPLQVKYADGELE 99 (402)
Q Consensus 86 ~~~~~~~~~~~~~~ 99 (402)
.+.|.|.+++.+..
T Consensus 85 g~~l~v~~a~~~~~ 98 (106)
T 2dgp_A 85 NRPIQVKPADSESR 98 (106)
T ss_dssp SSCCEEEECCCCSC
T ss_pred CceEEEEECCcccc
Confidence 68999998876554
No 45
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.79 E-value=5.8e-19 Score=135.23 Aligned_cols=79 Identities=27% Similarity=0.536 Sum_probs=73.4
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEE
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~ 180 (402)
.++|||+|||.++|+++|+++|++||.|.+|++++++ +|.++|||||+|.+.++|++|++.|||.. ++|+ .|.|.|
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~-~~gr--~l~V~~ 95 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLR-LQSK--TIKVSY 95 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCE-ETTE--ECEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCE-ECCE--EEEEEE
Confidence 5789999999999999999999999999999999987 79999999999999999999999999987 6665 689999
Q ss_pred cCC
Q 015716 181 ADT 183 (402)
Q Consensus 181 a~~ 183 (402)
|++
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 864
No 46
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.78 E-value=1.2e-19 Score=137.57 Aligned_cols=84 Identities=20% Similarity=0.401 Sum_probs=75.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCC--eeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCC---CCCC
Q 015716 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFAL--VDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKK---TLPG 84 (402)
Q Consensus 10 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~--v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~---~~~g 84 (402)
......+|||+|||+++|+++|+++|++||. |.+|++++|+.|++++|||||+|.+.++|++|++.||+.. .+.|
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 4567789999999999999999999999995 7799999999999999999999999999999999998763 3556
Q ss_pred CCCCccccccC
Q 015716 85 ASSPLQVKYAD 95 (402)
Q Consensus 85 ~~~~~~~~~~~ 95 (402)
+.|.|.+++
T Consensus 85 --r~i~V~~Ak 93 (95)
T 2lkz_A 85 --KTIGVDFAK 93 (95)
T ss_dssp --EEEEEEECC
T ss_pred --EEEEEEEcc
Confidence 788888765
No 47
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.77 E-value=6.5e-19 Score=139.20 Aligned_cols=106 Identities=17% Similarity=0.317 Sum_probs=93.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCc
Q 015716 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (402)
Q Consensus 10 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~ 89 (402)
.+...++|||+|||.++++++|+++|++||.|.+|.++.+. .++|||||+|.+.++|++|++.||+.. +.| +.|
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g--~~l 77 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP---ETRGTAYVVYEDIFDAKNAVDHLSGFN-VSN--RYL 77 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECST---TTTTCEEEEESSHHHHHHHHHHHTTCB-SSS--CBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC---CCCcEEEEEECCHHHHHHHHHHcCCCE-ECC--eEE
Confidence 45678999999999999999999999999999999999764 468999999999999999999997776 666 889
Q ss_pred cccccCcccccccceEEEcCCCCCCcHHHHHHhhccCCC
Q 015716 90 QVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGT 128 (402)
Q Consensus 90 ~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~ 128 (402)
.+.++.+.... .+++...++++|+++|++||.
T Consensus 78 ~v~~a~~~~~~-------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 78 VVLYYNANRAF-------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp EEEECCHHHHT-------TTSCHHHHHHHHHHHHHHHCC
T ss_pred EEEEecCChhh-------hhhhHhHhHHHHHHHHHHhCC
Confidence 99988765544 577888999999999999984
No 48
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.77 E-value=2.3e-18 Score=133.73 Aligned_cols=92 Identities=38% Similarity=0.670 Sum_probs=81.3
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 015716 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (402)
Q Consensus 8 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~ 87 (402)
.....+.++|||+|||.++++++|+++|++||.|.+|+|+.++ +++++|||||+|.+.++|++||+.||+..+..+..+
T Consensus 9 ~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~ 87 (105)
T 2dnh_A 9 ESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASS 87 (105)
T ss_dssp CCSCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSS
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCc
Confidence 3455678999999999999999999999999999999999998 699999999999999999999999988876555557
Q ss_pred CccccccCccccc
Q 015716 88 PLQVKYADGELER 100 (402)
Q Consensus 88 ~~~~~~~~~~~~~ 100 (402)
.|.|.+++.+..+
T Consensus 88 ~l~V~~a~~~~~~ 100 (105)
T 2dnh_A 88 SLVVKFADTDKES 100 (105)
T ss_dssp CCEEEESCSSCCC
T ss_pred cEEEEECccCccc
Confidence 8999888766554
No 49
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=3.6e-18 Score=129.99 Aligned_cols=86 Identities=27% Similarity=0.466 Sum_probs=78.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCcc
Q 015716 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (402)
Q Consensus 11 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~ 90 (402)
..+.++|||+|||.++++++|+++|++||.|.+|+++.++.+++++|||||+|.+.++|++|++.||+.. +.| +.|.
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l~ 78 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFE-LAG--RPMR 78 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCC-SSS--SCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCe-eCC--cEEE
Confidence 3578999999999999999999999999999999999999899999999999999999999999998766 666 8899
Q ss_pred ccccCcccc
Q 015716 91 VKYADGELE 99 (402)
Q Consensus 91 ~~~~~~~~~ 99 (402)
+.++..+..
T Consensus 79 V~~a~~~~~ 87 (95)
T 2dnz_A 79 VGHVTERLD 87 (95)
T ss_dssp EEESSCCCC
T ss_pred EEEcccccC
Confidence 888876544
No 50
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.76 E-value=9.4e-19 Score=131.83 Aligned_cols=82 Identities=16% Similarity=0.266 Sum_probs=70.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcC--CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCcccc
Q 015716 15 VKLFVGQVPKHMTEAQLLAMFKEFA--LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVK 92 (402)
Q Consensus 15 ~~l~V~nLp~~~t~~~L~~~f~~~G--~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~~~ 92 (402)
.+|||+|||+++++++|+++|++|| .|.+|+++.|+.+++++|||||+|.+.++|++|++.||+.. +.| +.|.|.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~-~~g--r~i~V~ 78 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRE-LHG--QNPVVT 78 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSC-SSS--CCCEEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCe-eCC--EEEEEE
Confidence 5899999999999999999999999 99999999999999999999999999999999999998776 666 888888
Q ss_pred ccCcccc
Q 015716 93 YADGELE 99 (402)
Q Consensus 93 ~~~~~~~ 99 (402)
++.+...
T Consensus 79 ~~~~~~~ 85 (90)
T 3p5t_L 79 PSNKLEH 85 (90)
T ss_dssp CC-----
T ss_pred ECCCCcc
Confidence 8776543
No 51
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.76 E-value=2e-18 Score=136.40 Aligned_cols=90 Identities=23% Similarity=0.346 Sum_probs=80.5
Q ss_pred cccCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCC
Q 015716 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (402)
Q Consensus 7 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~ 86 (402)
......+.++|||+|||.++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++||+.||+.. +.|
T Consensus 18 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g-- 94 (115)
T 2cpz_A 18 SQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQ-IGM-- 94 (115)
T ss_dssp CCCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCE-ETT--
T ss_pred cCcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCE-ECC--
Confidence 34456678999999999999999999999999999999999999889999999999999999999999998766 666
Q ss_pred CCccccccCcccc
Q 015716 87 SPLQVKYADGELE 99 (402)
Q Consensus 87 ~~~~~~~~~~~~~ 99 (402)
+.|.|.++.++..
T Consensus 95 ~~l~V~~a~~~~~ 107 (115)
T 2cpz_A 95 KRLKVQLKRSKND 107 (115)
T ss_dssp EECEEECCCCSCC
T ss_pred EEEEEEEcCCCCc
Confidence 8888888876544
No 52
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.8e-18 Score=133.43 Aligned_cols=87 Identities=24% Similarity=0.346 Sum_probs=78.0
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 015716 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (402)
Q Consensus 8 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~ 87 (402)
.....+.++|||+|||.++++++|+++|++||.|.+|+++.++.+++++|||||+|.+.++|++|++.||+.. +.| +
T Consensus 17 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~ 93 (106)
T 1p27_B 17 PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQD-LMG--Q 93 (106)
T ss_dssp BCCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCB-SSS--S
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCE-ECC--c
Confidence 3345567899999999999999999999999999999999999999999999999999999999999998766 666 8
Q ss_pred CccccccCcc
Q 015716 88 PLQVKYADGE 97 (402)
Q Consensus 88 ~~~~~~~~~~ 97 (402)
.|.+.++.++
T Consensus 94 ~l~V~~a~~~ 103 (106)
T 1p27_B 94 PISVDWCFVR 103 (106)
T ss_dssp BCEEEESEES
T ss_pred EEEEEeecCC
Confidence 8888887654
No 53
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.7e-18 Score=133.25 Aligned_cols=91 Identities=24% Similarity=0.352 Sum_probs=81.4
Q ss_pred ccccCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCC
Q 015716 6 KEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGA 85 (402)
Q Consensus 6 ~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~ 85 (402)
....+....++|||+|||.++++++|+++|++||.|.+|+++.++.+++++|||||+|.+.++|++|++.||+.. +.|
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g- 84 (105)
T 1x5u_A 7 GPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIK-LYG- 84 (105)
T ss_dssp CCCCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCB-CSS-
T ss_pred CCcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCe-ECC-
Confidence 345566788999999999999999999999999999999999999889999999999999999999999998766 666
Q ss_pred CCCccccccCcccc
Q 015716 86 SSPLQVKYADGELE 99 (402)
Q Consensus 86 ~~~~~~~~~~~~~~ 99 (402)
+.|.+.++..+..
T Consensus 85 -~~l~v~~a~~~~~ 97 (105)
T 1x5u_A 85 -KPIRVNKASAHNK 97 (105)
T ss_dssp -CBCEEEETTTTSC
T ss_pred -eEEEEEECCCCCc
Confidence 8888888876544
No 54
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3.7e-18 Score=130.98 Aligned_cols=87 Identities=33% Similarity=0.518 Sum_probs=78.1
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCC
Q 015716 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (402)
Q Consensus 9 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~ 88 (402)
.+....++|||+|||.++++++|+++|++||.|.+|+++.++.+++++|||||+|.+.++|++|++ |++.. +.| +.
T Consensus 5 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~-~~g--~~ 80 (99)
T 2dgs_A 5 SSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHD-IMG--KK 80 (99)
T ss_dssp CCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCB-SSS--CB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCE-ECC--eE
Confidence 456688999999999999999999999999999999999999899999999999999999999999 86665 666 88
Q ss_pred ccccccCcccc
Q 015716 89 LQVKYADGELE 99 (402)
Q Consensus 89 ~~~~~~~~~~~ 99 (402)
|.|.++.++..
T Consensus 81 l~V~~a~~~~~ 91 (99)
T 2dgs_A 81 VEVKRAEPRDS 91 (99)
T ss_dssp CEEEECCCCCC
T ss_pred EEEEECCCCcc
Confidence 88888876544
No 55
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.76 E-value=3.2e-18 Score=133.37 Aligned_cols=88 Identities=25% Similarity=0.448 Sum_probs=79.6
Q ss_pred cccCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCC
Q 015716 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (402)
Q Consensus 7 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~ 86 (402)
..+...+.++|||+|||.++++++|+++|++||.|.+|++++++.+++++|||||+|.+.++|++|++.|++.. +.|
T Consensus 19 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~-i~g-- 95 (108)
T 2jrs_A 19 LQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE-LAG-- 95 (108)
T ss_dssp SCCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCC-SSS--
T ss_pred cccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCE-ECC--
Confidence 34566788999999999999999999999999999999999998889999999999999999999999997766 666
Q ss_pred CCccccccCcc
Q 015716 87 SPLQVKYADGE 97 (402)
Q Consensus 87 ~~~~~~~~~~~ 97 (402)
+.|.+.++.++
T Consensus 96 ~~l~V~~a~~k 106 (108)
T 2jrs_A 96 RPMKVGHVTER 106 (108)
T ss_dssp SCCEEECSCSS
T ss_pred EEEEEEEcccC
Confidence 88888887654
No 56
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.3e-18 Score=134.55 Aligned_cols=92 Identities=21% Similarity=0.372 Sum_probs=82.3
Q ss_pred cccccCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCC
Q 015716 5 KKEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (402)
Q Consensus 5 ~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g 84 (402)
...+.+..+.++|||+|||.++++++|+++|++||+|.+|+++.++.+++++|||||+|.+.++|++||+.||+.. +.|
T Consensus 6 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g 84 (103)
T 2cq0_A 6 SGPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFG-YDH 84 (103)
T ss_dssp CCSCCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCE-ETT
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCe-eCC
Confidence 3455667789999999999999999999999999999999999999889999999999999999999999998766 666
Q ss_pred CCCCccccccCcccc
Q 015716 85 ASSPLQVKYADGELE 99 (402)
Q Consensus 85 ~~~~~~~~~~~~~~~ 99 (402)
+.|.|.++.++..
T Consensus 85 --~~l~v~~a~~~~~ 97 (103)
T 2cq0_A 85 --LILNVEWAKPSTN 97 (103)
T ss_dssp --EECEEEESSCCCC
T ss_pred --cEEEEEECCCCCC
Confidence 8888888876544
No 57
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.76 E-value=5.6e-18 Score=132.26 Aligned_cols=85 Identities=15% Similarity=0.239 Sum_probs=77.1
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEE
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~ 180 (402)
.++|||+||++++++++|+++|++||.|.+|+|++|+ +++++|||||+|.+.++|++|++.|||.. ++|+ .|.|.+
T Consensus 6 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~-~~gr--~i~V~~ 82 (110)
T 3s8s_A 6 LKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTS-VMGN--IIHAQL 82 (110)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCE-ETTE--ECEEEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCE-ECCe--EEEEEE
Confidence 5789999999999999999999999999999999998 69999999999999999999999999988 6665 589999
Q ss_pred cCCHHHHHH
Q 015716 181 ADTEKERQA 189 (402)
Q Consensus 181 a~~~~~~~~ 189 (402)
+.....+..
T Consensus 83 a~~~~~~~~ 91 (110)
T 3s8s_A 83 DIKGQQRMK 91 (110)
T ss_dssp CSTTHHHHH
T ss_pred CCCCcHHHH
Confidence 987665543
No 58
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=6.8e-18 Score=130.76 Aligned_cols=89 Identities=22% Similarity=0.381 Sum_probs=78.7
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHHh-cCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCC
Q 015716 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKE-FALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (402)
Q Consensus 8 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~-~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~ 86 (402)
+.+....++|||+|||+++++++|+++|++ ||.|.+|+|+.++ +++++|||||+|.+.++|++|++.|++...+.|
T Consensus 3 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g-- 79 (104)
T 2dhg_A 3 SGSSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGS-- 79 (104)
T ss_dssp CCCSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSS--
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCC--
Confidence 345677899999999999999999999999 9999999999999 899999999999999999999999977653666
Q ss_pred CCccccccCcccc
Q 015716 87 SPLQVKYADGELE 99 (402)
Q Consensus 87 ~~~~~~~~~~~~~ 99 (402)
+.|.+.++..+..
T Consensus 80 ~~l~v~~a~~~~~ 92 (104)
T 2dhg_A 80 KPVRLSVAIPKAS 92 (104)
T ss_dssp SCCCCCBCCCCCS
T ss_pred EeEEEEEccCCCc
Confidence 7888888765543
No 59
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.75 E-value=2.5e-18 Score=128.66 Aligned_cols=83 Identities=24% Similarity=0.444 Sum_probs=73.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCccc
Q 015716 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 91 (402)
Q Consensus 12 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~~ 91 (402)
.+.++|||+|||.++++++|+++|++||.|.+|+++.++.+++++|||||+|.+.++|++|++.||+.. +.| +.|.+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g--~~l~v 80 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQW-LGG--RQIRT 80 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCE-ETT--EECEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCE-ECC--eEEEE
Confidence 467899999999999999999999999999999999998889999999999999999999999998766 666 88888
Q ss_pred cccCcc
Q 015716 92 KYADGE 97 (402)
Q Consensus 92 ~~~~~~ 97 (402)
.++.++
T Consensus 81 ~~a~~k 86 (87)
T 3bs9_A 81 NWATRK 86 (87)
T ss_dssp EEEC--
T ss_pred EecCCC
Confidence 877643
No 60
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=2.5e-18 Score=133.00 Aligned_cols=89 Identities=25% Similarity=0.346 Sum_probs=80.2
Q ss_pred cccCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCC
Q 015716 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (402)
Q Consensus 7 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~ 86 (402)
...+..+.++|||+|||.++++++|+++|++||.|.+|+++.++.+++++|||||+|.+.++|++|++.||+.. +.|
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g-- 82 (103)
T 2dnm_A 6 SGPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAE-LDG-- 82 (103)
T ss_dssp CSSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCC-BTT--
T ss_pred CCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCE-ECC--
Confidence 44566778999999999999999999999999999999999999899999999999999999999999998766 666
Q ss_pred CCccccccCccc
Q 015716 87 SPLQVKYADGEL 98 (402)
Q Consensus 87 ~~~~~~~~~~~~ 98 (402)
+.|.|.++....
T Consensus 83 ~~l~V~~a~~~~ 94 (103)
T 2dnm_A 83 RELRVQVARYGR 94 (103)
T ss_dssp BCCEEEECSSCC
T ss_pred cEEEEEECCcCC
Confidence 888888887543
No 61
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.4e-18 Score=131.00 Aligned_cols=88 Identities=23% Similarity=0.338 Sum_probs=79.2
Q ss_pred cccccCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCC
Q 015716 5 KKEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (402)
Q Consensus 5 ~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g 84 (402)
...+.+..+.++|||+|||.++++++|+++|++||.|.+|+++.++.+++++|||||+|.+.++|++|++.||+.. +.|
T Consensus 6 ~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g 84 (95)
T 2cqc_A 6 SGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGME-LDG 84 (95)
T ss_dssp CCCCCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEE-ETT
T ss_pred CCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCE-ECC
Confidence 4455667788999999999999999999999999999999999999899999999999999999999999997766 666
Q ss_pred CCCCccccccC
Q 015716 85 ASSPLQVKYAD 95 (402)
Q Consensus 85 ~~~~~~~~~~~ 95 (402)
+.|.+.+++
T Consensus 85 --~~l~v~~a~ 93 (95)
T 2cqc_A 85 --RRIRVSGPS 93 (95)
T ss_dssp --EEEEEECCS
T ss_pred --EEEEEEecC
Confidence 788887765
No 62
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=4.3e-18 Score=131.66 Aligned_cols=92 Identities=25% Similarity=0.394 Sum_probs=81.3
Q ss_pred ccccccCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCC
Q 015716 4 SKKEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLP 83 (402)
Q Consensus 4 ~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~ 83 (402)
.+..+....+.++|||+|||+++++++|+++|++||.|.+|+++.+ +++++|||||+|.+.++|++|++.||+.. +.
T Consensus 5 ~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~-~~ 81 (103)
T 2d9p_A 5 SSGDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI-VA 81 (103)
T ss_dssp CCCCCCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCB-SS
T ss_pred CCCCccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCE-eC
Confidence 3445566778999999999999999999999999999999999998 69999999999999999999999998776 66
Q ss_pred CCCCCccccccCccccc
Q 015716 84 GASSPLQVKYADGELER 100 (402)
Q Consensus 84 g~~~~~~~~~~~~~~~~ 100 (402)
| +.|.|.++.++..+
T Consensus 82 g--~~l~V~~a~~~~~~ 96 (103)
T 2d9p_A 82 T--KPLYVALAQRKEER 96 (103)
T ss_dssp S--SBCEEEECSSCCCC
T ss_pred C--cEEEEEEecccccC
Confidence 6 88999888766543
No 63
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.75 E-value=3.1e-18 Score=126.88 Aligned_cols=81 Identities=28% Similarity=0.480 Sum_probs=74.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCccccc
Q 015716 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKY 93 (402)
Q Consensus 14 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~~~~ 93 (402)
+++|||+|||.++++++|+++|++||.|.+|++++++.+++++|||||+|.+.++|++|++.||+.. +.| +.|.+.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~-~~g--~~l~v~~ 77 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQD-LNG--RPLRINW 77 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCE-ETT--EECEEEE
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCe-eCC--cEEEEEe
Confidence 3689999999999999999999999999999999998899999999999999999999999997776 666 8888888
Q ss_pred cCcc
Q 015716 94 ADGE 97 (402)
Q Consensus 94 ~~~~ 97 (402)
+.++
T Consensus 78 a~~~ 81 (83)
T 3md1_A 78 AAKL 81 (83)
T ss_dssp CCCC
T ss_pred cCcC
Confidence 7654
No 64
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.75 E-value=4.3e-18 Score=136.97 Aligned_cols=89 Identities=22% Similarity=0.353 Sum_probs=79.9
Q ss_pred cccCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCC
Q 015716 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (402)
Q Consensus 7 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~ 86 (402)
...+..+.++|||+|||+++++++|+++|++||+|.+|++++++.+++++|||||+|.+.++|++||+.|++.. +.|
T Consensus 39 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~-i~g-- 115 (129)
T 2kxn_B 39 NRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGME-LDG-- 115 (129)
T ss_dssp CSSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCC-SSS--
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCE-ECC--
Confidence 34456788999999999999999999999999999999999999899999999999999999999999997766 666
Q ss_pred CCccccccCccc
Q 015716 87 SPLQVKYADGEL 98 (402)
Q Consensus 87 ~~~~~~~~~~~~ 98 (402)
+.|.|.++..+.
T Consensus 116 ~~l~V~~a~~~~ 127 (129)
T 2kxn_B 116 RRIRVDFSITKR 127 (129)
T ss_dssp SCCEESCCSSSS
T ss_pred EEEEEEEecCCC
Confidence 888888887543
No 65
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=5.8e-18 Score=131.88 Aligned_cols=91 Identities=29% Similarity=0.440 Sum_probs=80.6
Q ss_pred ccccCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeC-CCCCCcccEEEEEeCCHHHHHHHHHHh-cCCCCCC
Q 015716 6 KEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKD-KTTRASRGCCFVICPSRQEADKAVNAC-HNKKTLP 83 (402)
Q Consensus 6 ~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~-~~t~~~~g~afV~F~~~~~a~~ai~~l-~~~~~~~ 83 (402)
.........++|||+|||.++++++|+++|++||.|.+|+++.+ +.+++++|||||+|.+.++|++|++.| |+.. +.
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~-~~ 85 (107)
T 2cph_A 7 GQVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTH-LY 85 (107)
T ss_dssp CSSCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCB-SS
T ss_pred cccccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCe-EC
Confidence 34456778899999999999999999999999999999999999 788999999999999999999999999 6665 66
Q ss_pred CCCCCccccccCcccc
Q 015716 84 GASSPLQVKYADGELE 99 (402)
Q Consensus 84 g~~~~~~~~~~~~~~~ 99 (402)
| +.|.|.++.++..
T Consensus 86 g--~~l~v~~a~~~~~ 99 (107)
T 2cph_A 86 G--RRLVLEWADSEVT 99 (107)
T ss_dssp S--CBCEEEECCCCCC
T ss_pred C--CEEEEEeCCCCCC
Confidence 6 7888888876544
No 66
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.75 E-value=4.3e-18 Score=134.46 Aligned_cols=92 Identities=23% Similarity=0.419 Sum_probs=81.9
Q ss_pred ccccCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCC
Q 015716 6 KEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGA 85 (402)
Q Consensus 6 ~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~ 85 (402)
....+..+.++|||+|||.++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++||+.||+.. +.|
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g- 84 (115)
T 2dgo_A 7 GQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQW-LGG- 84 (115)
T ss_dssp SSCCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCE-ETT-
T ss_pred cCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCE-ECC-
Confidence 345567789999999999999999999999999999999999998889999999999999999999999997766 666
Q ss_pred CCCccccccCccccc
Q 015716 86 SSPLQVKYADGELER 100 (402)
Q Consensus 86 ~~~~~~~~~~~~~~~ 100 (402)
+.|.|.++..+...
T Consensus 85 -~~l~V~~a~~~~~~ 98 (115)
T 2dgo_A 85 -RQIRTNWATRKPPA 98 (115)
T ss_dssp -EECEEEESSCCCCC
T ss_pred -EEEEEEEccCCCCC
Confidence 88888888765443
No 67
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=3.4e-18 Score=131.20 Aligned_cols=87 Identities=23% Similarity=0.280 Sum_probs=78.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCc
Q 015716 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (402)
Q Consensus 10 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~ 89 (402)
...+.++|||+|||.++++++|+++|++||+|.+|+++.++.+++++|||||+|.+.++|++|++.||+.. +.| +.|
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l 80 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQV-FQG--RML 80 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEE-SSS--CEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCE-ECC--cEE
Confidence 45678999999999999999999999999999999999999889999999999999999999999997766 666 888
Q ss_pred cccccCcccc
Q 015716 90 QVKYADGELE 99 (402)
Q Consensus 90 ~~~~~~~~~~ 99 (402)
.+.++..+..
T Consensus 81 ~V~~a~~~~~ 90 (99)
T 1whw_A 81 HVLPSTIKKE 90 (99)
T ss_dssp EEEECCCCST
T ss_pred EEEEcCCCcc
Confidence 8888876544
No 68
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=4.5e-18 Score=133.44 Aligned_cols=91 Identities=23% Similarity=0.325 Sum_probs=80.5
Q ss_pred ccccCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhc------CC
Q 015716 6 KEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACH------NK 79 (402)
Q Consensus 6 ~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~------~~ 79 (402)
....+..+.++|||+|||+++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++|++.|| +.
T Consensus 7 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~ 86 (111)
T 1x4h_A 7 GLPSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGL 86 (111)
T ss_dssp CCCCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCE
T ss_pred CCCCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCc
Confidence 344566788999999999999999999999999999999999999999999999999999999999999997 54
Q ss_pred CCCCCCCCCccccccCcccc
Q 015716 80 KTLPGASSPLQVKYADGELE 99 (402)
Q Consensus 80 ~~~~g~~~~~~~~~~~~~~~ 99 (402)
. +.| +.|.+.++.++..
T Consensus 87 ~-~~g--~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 87 K-LDG--RQLKVDLAVTRDE 103 (111)
T ss_dssp E-SSS--CEEEEECCCCCCC
T ss_pred E-EcC--EEEEEEECCCCcc
Confidence 4 666 8888888776544
No 69
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.8e-18 Score=130.00 Aligned_cols=82 Identities=17% Similarity=0.338 Sum_probs=72.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcC-CCCCCCCCCC
Q 015716 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHN-KKTLPGASSP 88 (402)
Q Consensus 10 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~-~~~~~g~~~~ 88 (402)
.+.+.++|||+|||+++|+++|+++|++||.|.+|+|+++ +|||||+|.+.++|++|++.|++ ...+.| ++
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~G--r~ 83 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRG--QP 83 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETT--EE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECC--EE
Confidence 5678899999999999999999999999999999999875 58999999999999999998864 344667 88
Q ss_pred ccccccCcccc
Q 015716 89 LQVKYADGELE 99 (402)
Q Consensus 89 ~~~~~~~~~~~ 99 (402)
|.|.++..+..
T Consensus 84 l~V~~A~~~~~ 94 (105)
T 1sjq_A 84 IYIQFSNHKEL 94 (105)
T ss_dssp CCBCCCSSSSC
T ss_pred EEEEEcCCCCC
Confidence 99998876544
No 70
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5e-18 Score=131.04 Aligned_cols=88 Identities=28% Similarity=0.444 Sum_probs=79.0
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCC
Q 015716 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (402)
Q Consensus 9 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~ 88 (402)
....+.++|||+|||+++++++|+++|++||+|.+|+++.++.+++++|||||+|.+.++|++|++.||+.. +.| +.
T Consensus 7 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g--~~ 83 (102)
T 1x5s_A 7 GMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKS-VDG--RQ 83 (102)
T ss_dssp CCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCC-TTS--CC
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCE-ECC--eE
Confidence 445678999999999999999999999999999999999999889999999999999999999999998776 666 88
Q ss_pred ccccccCcccc
Q 015716 89 LQVKYADGELE 99 (402)
Q Consensus 89 ~~~~~~~~~~~ 99 (402)
|.+.++.+...
T Consensus 84 l~v~~a~~~~~ 94 (102)
T 1x5s_A 84 IRVDQAGKSSD 94 (102)
T ss_dssp CEEEEEECCCC
T ss_pred EEEEECCCCCC
Confidence 88888765543
No 71
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=5.3e-18 Score=130.38 Aligned_cols=88 Identities=18% Similarity=0.321 Sum_probs=78.5
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 015716 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (402)
Q Consensus 8 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~ 87 (402)
.....+.++|||+|||.++++++|+++|++||.|.+|+++.++ +++++|||||+|.+.++|++|++.||+.. +.| +
T Consensus 11 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~ 86 (100)
T 2do4_A 11 YSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMT-IKE--N 86 (100)
T ss_dssp CSSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEE-SSS--C
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCE-ECC--E
Confidence 3455678999999999999999999999999999999999998 79999999999999999999999997765 666 8
Q ss_pred CccccccCcccc
Q 015716 88 PLQVKYADGELE 99 (402)
Q Consensus 88 ~~~~~~~~~~~~ 99 (402)
.|.+.++.+...
T Consensus 87 ~l~v~~a~~~~~ 98 (100)
T 2do4_A 87 IIKVAISNSGPS 98 (100)
T ss_dssp EEEEEECCCCSC
T ss_pred EEEEEECCCCCC
Confidence 888888876543
No 72
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.75 E-value=7.7e-18 Score=129.20 Aligned_cols=85 Identities=21% Similarity=0.407 Sum_probs=76.7
Q ss_pred cccCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeE--------EEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcC
Q 015716 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDE--------VNIIKDKTTRASRGCCFVICPSRQEADKAVNACHN 78 (402)
Q Consensus 7 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~--------v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~ 78 (402)
........++|||+|||.++++++|+++|++||.|.+ |+++.++.+++++|||||+|.+.++|++|++.||+
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g 85 (99)
T 2la6_A 6 HHHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDG 85 (99)
T ss_dssp SCCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTT
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCC
Confidence 3456678899999999999999999999999999999 99999998999999999999999999999999987
Q ss_pred CCCCCCCCCCcccccc
Q 015716 79 KKTLPGASSPLQVKYA 94 (402)
Q Consensus 79 ~~~~~g~~~~~~~~~~ 94 (402)
.. +.| +.|.+.++
T Consensus 86 ~~-~~g--~~l~V~~A 98 (99)
T 2la6_A 86 KE-FSG--NPIKVSFA 98 (99)
T ss_dssp CB-SSS--SBCEEEEC
T ss_pred CE-eCC--cEEEEEec
Confidence 76 666 77877765
No 73
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=6e-18 Score=129.84 Aligned_cols=86 Identities=27% Similarity=0.431 Sum_probs=77.0
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCee-EEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 015716 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVD-EVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (402)
Q Consensus 9 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~-~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~ 87 (402)
......++|||+|||+++++++|+++|++||+|. +|++++++.+++++|||||+|.+.++|++|++.||+.. +.| +
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~ 80 (99)
T 2div_A 4 GSSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKP-LPG--A 80 (99)
T ss_dssp CCCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSE-ESS--C
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCc-cCC--C
Confidence 3456789999999999999999999999999999 99999999899999999999999999999999998766 666 5
Q ss_pred C----ccccccCcc
Q 015716 88 P----LQVKYADGE 97 (402)
Q Consensus 88 ~----~~~~~~~~~ 97 (402)
. |++.++...
T Consensus 81 ~~~~~l~v~~a~~~ 94 (99)
T 2div_A 81 TPAKRFKLNYATYS 94 (99)
T ss_dssp SSCEECCEEETTCC
T ss_pred CcceeEEEeecCCC
Confidence 5 888877654
No 74
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.75 E-value=3.2e-18 Score=131.88 Aligned_cols=89 Identities=26% Similarity=0.385 Sum_probs=77.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCcccccc
Q 015716 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYA 94 (402)
Q Consensus 15 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~~~~~ 94 (402)
++|||+|||.++++++|+++|++||+|.+|+++.+ ++|||||+|.+.++|++|++.|++.. +.| +.|.+.++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l~V~~a 72 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKV-ICG--SRVRVELS 72 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSC-SSS--CCCEEEES
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCe-ECC--cEEEEEEc
Confidence 58999999999999999999999999999999887 67899999999999999999998776 666 77888887
Q ss_pred Ccccccc-----------cceEEEcCCC
Q 015716 95 DGELERL-----------EHKLFIGMLP 111 (402)
Q Consensus 95 ~~~~~~~-----------~~~l~v~nlp 111 (402)
....... ..+|||+||+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 73 TGMPRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp SSCCCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred cCCCCcccCCCCCccccCCCceecCCCC
Confidence 6543221 5679999986
No 75
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.74 E-value=5.1e-18 Score=129.42 Aligned_cols=83 Identities=20% Similarity=0.316 Sum_probs=75.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCcccc
Q 015716 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVK 92 (402)
Q Consensus 13 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~~~ 92 (402)
+.++|||+|||.++++++|+++|++||.|.+|+++.++.+++++|||||+|.+.++|++|++.|++.. +.| +.|.+.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~-~~g--~~l~V~ 77 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQ-LGS--RFLKCG 77 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCE-ETT--EECEEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCe-ECC--eEEEEE
Confidence 46899999999999999999999999999999999999899999999999999999999999997766 666 888888
Q ss_pred ccCccc
Q 015716 93 YADGEL 98 (402)
Q Consensus 93 ~~~~~~ 98 (402)
++.+..
T Consensus 78 ~a~~~~ 83 (96)
T 2x1f_A 78 YSSNSD 83 (96)
T ss_dssp ECSCSS
T ss_pred EcCCCC
Confidence 876543
No 76
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.74 E-value=3.7e-18 Score=127.07 Aligned_cols=81 Identities=25% Similarity=0.404 Sum_probs=74.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCcc
Q 015716 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (402)
Q Consensus 11 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~ 90 (402)
..+.++|||+|||+++++++|+++|++||.|.+|++++++.+++++|||||+|.+.++|++|++.||+.. +.| +.|.
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l~ 80 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESE-LFG--RTIR 80 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCE-ETT--EECE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCE-ECC--cEEE
Confidence 4578999999999999999999999999999999999998889999999999999999999999997776 566 7777
Q ss_pred cccc
Q 015716 91 VKYA 94 (402)
Q Consensus 91 ~~~~ 94 (402)
+.++
T Consensus 81 v~~a 84 (85)
T 3mdf_A 81 VNLA 84 (85)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 7765
No 77
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.74 E-value=2e-18 Score=140.15 Aligned_cols=121 Identities=19% Similarity=0.255 Sum_probs=77.3
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCccccccCcccccccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeC
Q 015716 58 CCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG 137 (402)
Q Consensus 58 ~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~ 137 (402)
+.|.+|.+...+.+|++.+++... .+. ........ +......++|||+|||.++++++|+++|++||.|..|+|+++
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~-~g~-~~~~~~~~-~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~ 82 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQ-MGR-GSMSYGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRD 82 (135)
T ss_dssp -------------------------------CCSCCS-CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCC
T ss_pred cccccccCCCchhhhhhhccCCCC-CCC-CCCCcCCC-CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEec
Confidence 678888899999999998876553 221 11221111 223344789999999999999999999999999999999988
Q ss_pred C-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEEcCCH
Q 015716 138 S-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 184 (402)
Q Consensus 138 ~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~a~~~ 184 (402)
. ++.++|||||+|.+.++|++|++.|||.. ++|+ .|.|.|+..+
T Consensus 83 ~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~-i~g~--~l~V~~a~~~ 127 (135)
T 2lea_A 83 RYTKESRGFAFVRFHDKRDAEDAMDAMDGAV-LDGR--ELRVQMARYG 127 (135)
T ss_dssp SSSSSCCSCCEEECSCHHHHHHHHTTTTTCC-SSSS--CCEEEECCCC
T ss_pred CCCCccceEEEEEECCHHHHHHHHHHcCCCE-ECCE--EEEEEECCCC
Confidence 6 78999999999999999999999999988 6665 5899998764
No 78
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.74 E-value=2.7e-18 Score=130.01 Aligned_cols=80 Identities=16% Similarity=0.406 Sum_probs=71.9
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCC--eeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCc---ccCCCcee
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFSIYGT--IKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKH---KMEGSSVP 175 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~~~G~--v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~---~~~g~~~~ 175 (402)
=.+|||+|||+++|+++|+++|++||. +.+|++++|+ +++++|||||+|.+.++|++|++.|||.. .++|+ +
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr--~ 86 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK--T 86 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE--E
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE--E
Confidence 468999999999999999999999995 6789999987 79999999999999999999999999974 36775 6
Q ss_pred EEEEEcCC
Q 015716 176 LVVKWADT 183 (402)
Q Consensus 176 l~v~~a~~ 183 (402)
|.|+||++
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 89999874
No 79
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.7e-18 Score=130.19 Aligned_cols=87 Identities=25% Similarity=0.431 Sum_probs=78.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEE-EEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCc
Q 015716 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEV-NIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (402)
Q Consensus 11 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v-~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~ 89 (402)
..+.++|||+|||.++++++|+++|++||.|.+| ++++++.+++++|||||+|.+.++|++|++.||+.. +.| +.|
T Consensus 2 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g--~~l 78 (96)
T 1x5t_A 2 SSGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQY-LCN--RPI 78 (96)
T ss_dssp CSCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCE-ETT--EEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCE-ECC--EEE
Confidence 3568999999999999999999999999999999 999998889999999999999999999999998776 666 888
Q ss_pred cccccCccccc
Q 015716 90 QVKYADGELER 100 (402)
Q Consensus 90 ~~~~~~~~~~~ 100 (402)
.+.++.++..+
T Consensus 79 ~v~~a~~~~~~ 89 (96)
T 1x5t_A 79 TVSYAFKKDSK 89 (96)
T ss_dssp EEEESCCCCCC
T ss_pred EEEEecccCCC
Confidence 88888765443
No 80
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.74 E-value=1.6e-18 Score=133.19 Aligned_cols=84 Identities=20% Similarity=0.268 Sum_probs=74.9
Q ss_pred CCCCCeEEEcCCCC------CCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCC
Q 015716 11 SEERVKLFVGQVPK------HMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (402)
Q Consensus 11 ~~~~~~l~V~nLp~------~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g 84 (402)
....++|||+|||. ++++++|+++|++||.|.+|+|++++.|++++|||||+|.+.++|++||+.||+..+ .|
T Consensus 3 ~~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~-~g 81 (100)
T 3ns6_A 3 LGSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRL-DL 81 (100)
T ss_dssp SCGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBS-SS
T ss_pred CCcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCccc-CC
Confidence 34578999999999 999999999999999999999999999999999999999999999999999988774 32
Q ss_pred CCCCccccccCc
Q 015716 85 ASSPLQVKYADG 96 (402)
Q Consensus 85 ~~~~~~~~~~~~ 96 (402)
.+.|.+.++.+
T Consensus 82 -~r~l~V~~a~~ 92 (100)
T 3ns6_A 82 -KHRLFLYTMKD 92 (100)
T ss_dssp -SCBCEEEESHH
T ss_pred -CeEEEEEECch
Confidence 26788877754
No 81
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.9e-18 Score=126.99 Aligned_cols=81 Identities=22% Similarity=0.261 Sum_probs=73.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCcc
Q 015716 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (402)
Q Consensus 11 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~ 90 (402)
..+.++|||+|||+++++++|+++|++||.|.+|+++.++.+++++|||||+|.+.++|++|++.||+.. +.| +.++
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~~~ 78 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASG-VQA--QMAK 78 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHT-CCE--ESCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCe-Eee--EEEe
Confidence 3578999999999999999999999999999999999999899999999999999999999999998776 555 6676
Q ss_pred cccc
Q 015716 91 VKYA 94 (402)
Q Consensus 91 ~~~~ 94 (402)
+.+.
T Consensus 79 ~~~~ 82 (85)
T 1x4e_A 79 QSGP 82 (85)
T ss_dssp SSCC
T ss_pred ecCC
Confidence 6654
No 82
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.74 E-value=5e-18 Score=132.93 Aligned_cols=88 Identities=20% Similarity=0.284 Sum_probs=78.7
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 015716 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (402)
Q Consensus 8 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~ 87 (402)
.....+.++|||+|||.++++++|+++|++||.|.+|+++.++.+++++|||||+|.+.++|++|++.||+.. +.| +
T Consensus 20 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~-~~g--~ 96 (110)
T 1oo0_B 20 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAE-IMG--Q 96 (110)
T ss_dssp BCCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCE-ETT--E
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCE-ECC--c
Confidence 3445677899999999999999999999999999999999999899999999999999999999999998766 666 8
Q ss_pred CccccccCccc
Q 015716 88 PLQVKYADGEL 98 (402)
Q Consensus 88 ~~~~~~~~~~~ 98 (402)
.|.|.++.++.
T Consensus 97 ~l~V~~a~~~~ 107 (110)
T 1oo0_B 97 TIQVDWCFVKG 107 (110)
T ss_dssp ECEEEESEESS
T ss_pred EEEEEEcccCC
Confidence 88888876544
No 83
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=4.8e-18 Score=129.07 Aligned_cols=84 Identities=27% Similarity=0.489 Sum_probs=75.6
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 015716 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (402)
Q Consensus 8 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~ 87 (402)
.....+.++|||+|||.++++++|+++|++||+|.+|+++.++.+++++|||||+|.+.++|++|++.||+.. +.| +
T Consensus 10 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g--~ 86 (94)
T 2e5h_A 10 GGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQ-LFG--R 86 (94)
T ss_dssp CSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEE-ETT--E
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCe-eCC--c
Confidence 3456678999999999999999999999999999999999999889999999999999999999999997766 556 7
Q ss_pred Ccccccc
Q 015716 88 PLQVKYA 94 (402)
Q Consensus 88 ~~~~~~~ 94 (402)
.|.+.++
T Consensus 87 ~l~v~~a 93 (94)
T 2e5h_A 87 VIKASIA 93 (94)
T ss_dssp EEEEEEC
T ss_pred EEEEEec
Confidence 7777665
No 84
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=7.1e-18 Score=129.96 Aligned_cols=83 Identities=18% Similarity=0.282 Sum_probs=73.4
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 015716 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (402)
Q Consensus 8 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~ 87 (402)
.++....++|||+|||+++|+++|+++|++||+|.+|+|++|+. ++++|||||+|.+.++|++||+ +++.. +.| +
T Consensus 5 ~~~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~-~~g--r 79 (103)
T 1s79_A 5 LKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQK-YKE--T 79 (103)
T ss_dssp CSSCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCC-CTT--T
T ss_pred ccccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCE-ECC--E
Confidence 34566789999999999999999999999999999999999987 9999999999999999999999 75554 777 7
Q ss_pred CccccccC
Q 015716 88 PLQVKYAD 95 (402)
Q Consensus 88 ~~~~~~~~ 95 (402)
.|.+.+..
T Consensus 80 ~l~V~~~~ 87 (103)
T 1s79_A 80 DLLILFKD 87 (103)
T ss_dssp TCEEEEHH
T ss_pred EEEEEEch
Confidence 77777654
No 85
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3.2e-18 Score=132.13 Aligned_cols=89 Identities=22% Similarity=0.329 Sum_probs=79.7
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 015716 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (402)
Q Consensus 8 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~ 87 (402)
.....+.++|||+|||.++++++|+++|++||.|.+|+++.++.+++++|||||+|.+.++|++|++.||+.. +.| +
T Consensus 6 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g--~ 82 (102)
T 2cqb_A 6 SGMATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESE-LFG--R 82 (102)
T ss_dssp SCSCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEE-ETT--E
T ss_pred CCcCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCE-ECC--c
Confidence 3455688999999999999999999999999999999999998899999999999999999999999997766 666 8
Q ss_pred CccccccCcccc
Q 015716 88 PLQVKYADGELE 99 (402)
Q Consensus 88 ~~~~~~~~~~~~ 99 (402)
.|.+.++.+...
T Consensus 83 ~l~V~~a~~~~~ 94 (102)
T 2cqb_A 83 TIRVNLAKPMRI 94 (102)
T ss_dssp EEEEEECCCCCC
T ss_pred EEEEEeCCCCCC
Confidence 888888876544
No 86
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.73 E-value=1.3e-17 Score=131.76 Aligned_cols=85 Identities=29% Similarity=0.464 Sum_probs=76.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCc
Q 015716 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (402)
Q Consensus 10 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~ 89 (402)
+..+.++|||+|||.++++++|+++|++||.|.+|+++.++ +++++|||||+|.+.++|++|++.|++.. +.| +.|
T Consensus 3 e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~-~~g--~~l 78 (116)
T 2fy1_A 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKS-LHG--KAI 78 (116)
T ss_dssp TTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCB-CSS--SBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCE-ECC--EEE
Confidence 34567999999999999999999999999999999999998 79999999999999999999999997766 666 788
Q ss_pred cccccCccc
Q 015716 90 QVKYADGEL 98 (402)
Q Consensus 90 ~~~~~~~~~ 98 (402)
.|.+++...
T Consensus 79 ~V~~a~~~~ 87 (116)
T 2fy1_A 79 KVEQAKKPS 87 (116)
T ss_dssp EEEECCCSS
T ss_pred EEEECCCCC
Confidence 888876543
No 87
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=6.2e-18 Score=129.50 Aligned_cols=85 Identities=22% Similarity=0.324 Sum_probs=76.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC---CCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCC
Q 015716 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKT---TRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (402)
Q Consensus 12 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~---t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~ 88 (402)
.+.++|||+|||.++++++|+++|++||+|.+|+++.++. |++++|||||+|.+.++|++|++.||+.. +.| +.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~ 79 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHT-VDG--HK 79 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCE-ETT--EE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCe-eCC--eE
Confidence 5789999999999999999999999999999999999876 66899999999999999999999997766 666 88
Q ss_pred ccccccCcccc
Q 015716 89 LQVKYADGELE 99 (402)
Q Consensus 89 ~~~~~~~~~~~ 99 (402)
|.+.++.....
T Consensus 80 l~V~~a~~~~~ 90 (98)
T 2cpf_A 80 LEVRISERATK 90 (98)
T ss_dssp CEEECSSCSSC
T ss_pred EEEEEccCCCC
Confidence 88888876544
No 88
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=8.1e-18 Score=133.07 Aligned_cols=88 Identities=30% Similarity=0.436 Sum_probs=78.9
Q ss_pred ccccCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCC
Q 015716 6 KEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGA 85 (402)
Q Consensus 6 ~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~ 85 (402)
....++...++|||+|||+++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++||+.+++ .+.|
T Consensus 9 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~--~~~g- 85 (116)
T 2cqd_A 9 HGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP--IIDG- 85 (116)
T ss_dssp CCCCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC--EETT-
T ss_pred CCCcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC--cCCC-
Confidence 3455677889999999999999999999999999999999999998999999999999999999999999975 4767
Q ss_pred CCCccccccCcc
Q 015716 86 SSPLQVKYADGE 97 (402)
Q Consensus 86 ~~~~~~~~~~~~ 97 (402)
+.|.|.++...
T Consensus 86 -~~l~V~~a~~~ 96 (116)
T 2cqd_A 86 -RKANVNLAYLG 96 (116)
T ss_dssp -EECEEEESTTT
T ss_pred -EEEEEEEcccC
Confidence 88888887543
No 89
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.73 E-value=4.8e-18 Score=134.84 Aligned_cols=84 Identities=24% Similarity=0.333 Sum_probs=75.7
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 015716 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (402)
Q Consensus 8 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~ 87 (402)
..+..+.++|||+|||+++++++|+++|++||.|.+|++++++.+++++|||||+|.+.++|++|++.||+.. +.| +
T Consensus 34 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g--~ 110 (118)
T 2khc_A 34 QIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQ-VGT--K 110 (118)
T ss_dssp SCCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCE-ETT--E
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCE-ECC--E
Confidence 3456678999999999999999999999999999999999998899999999999999999999999998766 666 7
Q ss_pred Ccccccc
Q 015716 88 PLQVKYA 94 (402)
Q Consensus 88 ~~~~~~~ 94 (402)
.|+|.++
T Consensus 111 ~l~V~~a 117 (118)
T 2khc_A 111 RLKVQLK 117 (118)
T ss_dssp ECCEEEC
T ss_pred EEEEEec
Confidence 7777664
No 90
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.73 E-value=2.6e-17 Score=127.65 Aligned_cols=86 Identities=48% Similarity=0.814 Sum_probs=77.8
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEE
Q 015716 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (402)
Q Consensus 101 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~ 180 (402)
..++|||+|||.++++++|+++|++||.|.+|.|+++.++.++|||||+|.+.++|++|++.|||..+.+|..+.|.|.+
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~ 93 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKF 93 (105)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEE
Confidence 47899999999999999999999999999999999999999999999999999999999999999985555335699999
Q ss_pred cCCHHH
Q 015716 181 ADTEKE 186 (402)
Q Consensus 181 a~~~~~ 186 (402)
+..+.+
T Consensus 94 a~~~~~ 99 (105)
T 2dnh_A 94 ADTDKE 99 (105)
T ss_dssp SCSSCC
T ss_pred CccCcc
Confidence 987643
No 91
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.73 E-value=1.9e-18 Score=130.21 Aligned_cols=82 Identities=18% Similarity=0.420 Sum_probs=72.7
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCC-CeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEE
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFSIYG-TIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~~~G-~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~ 179 (402)
+++|||+|||+++|+++|+++|++|| .|.+|+|++++ ++.++|||||+|.+.++|++|++.+++...++|+ +|.|.
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr--~i~V~ 78 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQ--KVSMH 78 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTE--EEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCE--EEEEE
Confidence 36899999999999999999999999 89999999987 7899999999999999999999987654447775 69999
Q ss_pred EcCCHH
Q 015716 180 WADTEK 185 (402)
Q Consensus 180 ~a~~~~ 185 (402)
|+.++.
T Consensus 79 ~a~~~~ 84 (91)
T 2lxi_A 79 YSDPKP 84 (91)
T ss_dssp CCCSCC
T ss_pred EcCCCC
Confidence 997653
No 92
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=5e-18 Score=131.53 Aligned_cols=87 Identities=25% Similarity=0.392 Sum_probs=77.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCc
Q 015716 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (402)
Q Consensus 10 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~ 89 (402)
.+...++|||+|||.++++++|+++|++||.|.+|+++.++.+++++|||||+|.+.++|++|++.||+.. +.| +.|
T Consensus 4 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l 80 (104)
T 1p1t_A 4 VDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGRE-FSG--RAL 80 (104)
T ss_dssp SHHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBS-CSS--SCB
T ss_pred cCCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCe-eCC--cEE
Confidence 34567899999999999999999999999999999999998889999999999999999999999997766 666 888
Q ss_pred cccccCcccc
Q 015716 90 QVKYADGELE 99 (402)
Q Consensus 90 ~~~~~~~~~~ 99 (402)
.+.++..+..
T Consensus 81 ~v~~a~~~~~ 90 (104)
T 1p1t_A 81 RVDNAASEKN 90 (104)
T ss_dssp EEEETTCTTH
T ss_pred EEEeCCCccc
Confidence 8888775543
No 93
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=9.2e-18 Score=130.00 Aligned_cols=89 Identities=15% Similarity=0.297 Sum_probs=78.5
Q ss_pred ccccCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC-CCcccEEEEEeCCHHHHHHHHHHhcCCCCCCC
Q 015716 6 KEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTT-RASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (402)
Q Consensus 6 ~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t-~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g 84 (402)
+........++|||+|||.++++++|+++|++|| |.+|+|++++.+ ++++|||||+|.+.++|++|| .||+.. +.|
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~-~~g 83 (104)
T 1wi8_A 7 GSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEES-LGN 83 (104)
T ss_dssp CCCCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCE-ETT
T ss_pred CCCCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCE-eCC
Confidence 3445566789999999999999999999999999 999999999987 899999999999999999999 897766 666
Q ss_pred CCCCccccccCcccc
Q 015716 85 ASSPLQVKYADGELE 99 (402)
Q Consensus 85 ~~~~~~~~~~~~~~~ 99 (402)
+.|.|.++.++..
T Consensus 84 --~~l~V~~a~~~~~ 96 (104)
T 1wi8_A 84 --KRIRVDVADQAQD 96 (104)
T ss_dssp --EECEEEECCCCCC
T ss_pred --cEEEEEEccCCCC
Confidence 8888888776544
No 94
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.72 E-value=4.9e-18 Score=137.30 Aligned_cols=86 Identities=23% Similarity=0.422 Sum_probs=76.6
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeE--EEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCC----CCC
Q 015716 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDE--VNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNK----KTL 82 (402)
Q Consensus 9 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~--v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~----~~~ 82 (402)
......++|||+|||+++|+++|+++|++||.|.. |+|++|+.|++++|||||+|.+. +|++|++.||+. . +
T Consensus 18 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~-~ 95 (131)
T 2m2b_A 18 SSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLT-I 95 (131)
T ss_dssp CCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCC-G
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCcc-C
Confidence 44567899999999999999999999999999977 99999999999999999999999 999999999876 4 5
Q ss_pred CCCCCCccccccCccc
Q 015716 83 PGASSPLQVKYADGEL 98 (402)
Q Consensus 83 ~g~~~~~~~~~~~~~~ 98 (402)
.| +.|.|.++.+..
T Consensus 96 ~g--r~l~V~~a~~~~ 109 (131)
T 2m2b_A 96 DG--KTINVEFAKGSK 109 (131)
T ss_dssp GG--CCCCCEECCCSC
T ss_pred CC--EEEEEEECCCCC
Confidence 56 888888876543
No 95
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1e-17 Score=131.88 Aligned_cols=89 Identities=24% Similarity=0.305 Sum_probs=79.7
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCee--------EEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCC
Q 015716 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVD--------EVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNK 79 (402)
Q Consensus 8 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~--------~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~ 79 (402)
..+..+.++|||+|||.++++++|+++|++||.|. .|+|+.++.+++++|||||+|.+.++|++||+.||+.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 88 (113)
T 2cpe_A 9 PDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGK 88 (113)
T ss_dssp CCCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTC
T ss_pred cccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCC
Confidence 34667889999999999999999999999999999 6999999889999999999999999999999999777
Q ss_pred CCCCCCCCCccccccCcccc
Q 015716 80 KTLPGASSPLQVKYADGELE 99 (402)
Q Consensus 80 ~~~~g~~~~~~~~~~~~~~~ 99 (402)
. +.| +.|.|.++.....
T Consensus 89 ~-~~g--~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 89 D-FQG--SKLKVSLARKKPP 105 (113)
T ss_dssp E-ETT--EECEEECSSCCCC
T ss_pred c-cCC--CEEEEEECCCCCC
Confidence 6 666 8888888876544
No 96
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.72 E-value=1.2e-17 Score=136.61 Aligned_cols=89 Identities=27% Similarity=0.419 Sum_probs=79.6
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCC
Q 015716 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (402)
Q Consensus 9 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~ 88 (402)
.+....++|||+|||.++++++|+++|++||+|++|++++++.+++++|||||+|.+.++|++|++.||+.. +.| +.
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~ 113 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFN-ILN--KR 113 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEE-CSS--CE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCE-ECC--eE
Confidence 345677999999999999999999999999999999999999899999999999999999999999997766 666 78
Q ss_pred ccccccCccccc
Q 015716 89 LQVKYADGELER 100 (402)
Q Consensus 89 ~~~~~~~~~~~~ 100 (402)
|.|.++.....+
T Consensus 114 l~v~~a~~~~~~ 125 (139)
T 1u6f_A 114 LKVALAASGHQR 125 (139)
T ss_dssp EEEEESSCCCCC
T ss_pred EEEEECCCCCCC
Confidence 888888765443
No 97
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.72 E-value=9.3e-18 Score=125.48 Aligned_cols=82 Identities=26% Similarity=0.417 Sum_probs=71.5
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 015716 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (402)
Q Consensus 8 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~ 87 (402)
..+..+.++|||+|||+++++++|+++|++||.|.+|++++++.+++++|||||+|.+.++|++|++. ++.. +.| +
T Consensus 5 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~-~~g--~ 80 (87)
T 3s7r_A 5 SKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHR-LDG--R 80 (87)
T ss_dssp --CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEE-ETT--E
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCE-ECC--E
Confidence 45667889999999999999999999999999999999999998999999999999999999999976 4544 666 6
Q ss_pred Cccccc
Q 015716 88 PLQVKY 93 (402)
Q Consensus 88 ~~~~~~ 93 (402)
.|.+++
T Consensus 81 ~i~v~~ 86 (87)
T 3s7r_A 81 VIDPKK 86 (87)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 666654
No 98
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=9.4e-18 Score=130.21 Aligned_cols=89 Identities=27% Similarity=0.331 Sum_probs=79.0
Q ss_pred cccCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCC
Q 015716 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (402)
Q Consensus 7 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~ 86 (402)
...+..+.++|||+|||+++++++|+++|++||+|.+|+++.++.+++++|||||+|.+.++|++||+. ++.. +.|
T Consensus 9 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~-~~g-- 84 (105)
T 2dh8_A 9 NNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHT-LDG-- 84 (105)
T ss_dssp CCCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEE-ETT--
T ss_pred CcCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCe-ECC--
Confidence 345677889999999999999999999999999999999999998999999999999999999999998 5554 666
Q ss_pred CCccccccCcccc
Q 015716 87 SPLQVKYADGELE 99 (402)
Q Consensus 87 ~~~~~~~~~~~~~ 99 (402)
+.|.|.++.++..
T Consensus 85 ~~l~V~~a~~~~~ 97 (105)
T 2dh8_A 85 RNIDPKPCTPRGM 97 (105)
T ss_dssp EEEBCCCSCCSSC
T ss_pred EEEEEEEccCCCC
Confidence 7888888776544
No 99
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.72 E-value=9.7e-18 Score=139.32 Aligned_cols=82 Identities=22% Similarity=0.355 Sum_probs=74.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcC--CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCcc
Q 015716 13 ERVKLFVGQVPKHMTEAQLLAMFKEFA--LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (402)
Q Consensus 13 ~~~~l~V~nLp~~~t~~~L~~~f~~~G--~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~ 90 (402)
+.++|||+|||+++++++|+++|++|| .|.+|+|+.|+.+|+++|||||+|.+.++|++||+.|++.. +.| +.|.
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~-~~G--r~l~ 130 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKV-LNG--EKVD 130 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCE-ETT--EECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCE-ECC--eEeE
Confidence 568999999999999999999999999 99999999999999999999999999999999999997766 666 8888
Q ss_pred ccccCcc
Q 015716 91 VKYADGE 97 (402)
Q Consensus 91 ~~~~~~~ 97 (402)
|.++.++
T Consensus 131 V~~a~~~ 137 (156)
T 3n9u_C 131 VRPATRQ 137 (156)
T ss_dssp EEECCHH
T ss_pred EEEcCCC
Confidence 8887643
No 100
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.72 E-value=1.3e-17 Score=128.91 Aligned_cols=89 Identities=22% Similarity=0.444 Sum_probs=78.2
Q ss_pred ccccCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCC
Q 015716 6 KEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGA 85 (402)
Q Consensus 6 ~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~ 85 (402)
.......+.++|||+|||+++++++|+++|++|| |.+|++++++.+++++|||||+|.+.++|++|+ .||+.. +.|
T Consensus 7 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~-~~g- 82 (103)
T 2dng_A 7 GKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGAL-LGD- 82 (103)
T ss_dssp CCCCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCE-ETT-
T ss_pred CCCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCe-ECC-
Confidence 3444566789999999999999999999999997 999999999999999999999999999999999 887765 666
Q ss_pred CCCccccccCcccc
Q 015716 86 SSPLQVKYADGELE 99 (402)
Q Consensus 86 ~~~~~~~~~~~~~~ 99 (402)
+.|.|.++.+...
T Consensus 83 -~~l~V~~a~~~~~ 95 (103)
T 2dng_A 83 -RSLRVDIAEGRKQ 95 (103)
T ss_dssp -EECEEEECCCCCC
T ss_pred -eEEEEEEecCCCC
Confidence 8888888876544
No 101
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.72 E-value=4.3e-17 Score=123.22 Aligned_cols=85 Identities=25% Similarity=0.324 Sum_probs=75.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCc
Q 015716 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (402)
Q Consensus 10 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~ 89 (402)
...+.++|||+|||.++++++|+++|++||.|.+|+++++ +++++|||||+|.+.++|++|++.||+.. +.| +.|
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~-~~g--~~l 78 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMK-LSG--REI 78 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCC-BTT--BCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCE-ECC--cEE
Confidence 4567899999999999999999999999999999999985 68999999999999999999999998766 666 788
Q ss_pred cccccCcccc
Q 015716 90 QVKYADGELE 99 (402)
Q Consensus 90 ~~~~~~~~~~ 99 (402)
.+.++.+...
T Consensus 79 ~v~~a~~~~~ 88 (92)
T 2dgv_A 79 DVRIDRNASG 88 (92)
T ss_dssp CCEECSCCSS
T ss_pred EEEEcCCCCC
Confidence 8888776543
No 102
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.72 E-value=1.3e-17 Score=126.83 Aligned_cols=84 Identities=21% Similarity=0.336 Sum_probs=74.6
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 015716 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (402)
Q Consensus 8 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~ 87 (402)
.......++|||+|||+++++++|+++|++||+|.+|+++.++. ++++|||||+|.+.++|++|++.||+.. +.| +
T Consensus 10 ~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~ 85 (95)
T 2ywk_A 10 PAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIR-LYG--R 85 (95)
T ss_dssp --CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCE-ETT--E
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCE-ECC--C
Confidence 44566789999999999999999999999999999999999986 9999999999999999999999997766 666 7
Q ss_pred CccccccC
Q 015716 88 PLQVKYAD 95 (402)
Q Consensus 88 ~~~~~~~~ 95 (402)
.|.+.+++
T Consensus 86 ~l~V~~a~ 93 (95)
T 2ywk_A 86 PINVSGPS 93 (95)
T ss_dssp ECEEECCC
T ss_pred EEEEEEcC
Confidence 88887764
No 103
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.72 E-value=9.1e-18 Score=131.08 Aligned_cols=88 Identities=24% Similarity=0.336 Sum_probs=73.4
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 015716 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (402)
Q Consensus 8 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~ 87 (402)
.+...+.++|||+|||.++++++|+++|++||.|.+|++++++.+++++|||||+|.+.++|++|++.+ + ..+.| +
T Consensus 19 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~-~~l~g--~ 94 (109)
T 2rs2_A 19 SHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-R-HELDS--K 94 (109)
T ss_dssp -------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-C-EEETT--E
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-C-CcCCC--E
Confidence 345678899999999999999999999999999999999999989999999999999999999999987 4 44777 7
Q ss_pred CccccccCcccc
Q 015716 88 PLQVKYADGELE 99 (402)
Q Consensus 88 ~~~~~~~~~~~~ 99 (402)
.+.+.++.+...
T Consensus 95 ~l~V~~a~~~~~ 106 (109)
T 2rs2_A 95 TIDPKVAFPRRA 106 (109)
T ss_dssp EEEEEECCCCCC
T ss_pred EEEEEEccCCCC
Confidence 888887765543
No 104
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.72 E-value=1.1e-17 Score=121.32 Aligned_cols=74 Identities=28% Similarity=0.428 Sum_probs=67.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCccccc
Q 015716 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKY 93 (402)
Q Consensus 16 ~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~~~~ 93 (402)
+|||+|||+++++++|+++|++||+|.+|+++.++.+++++|||||+|.+.++|++|++ |++.. +.| +.+.+++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~-~~g--~~l~v~~ 74 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHE-INN--KMVECKK 74 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCC-SSS--CCCEEEC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCE-ECC--EEEEEEe
Confidence 59999999999999999999999999999999999889999999999999999999998 76655 666 7777665
No 105
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.72 E-value=2.1e-17 Score=132.70 Aligned_cols=89 Identities=24% Similarity=0.320 Sum_probs=79.0
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 015716 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (402)
Q Consensus 8 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~ 87 (402)
.....+.++|||+|||.++++++|+++|++||.|.+|.|+.++.+++++|||||+|.+.++|++||+.||+.. +.| +
T Consensus 16 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~ 92 (126)
T 3ex7_B 16 PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQD-LMG--Q 92 (126)
T ss_dssp BCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCB-SSS--S
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCe-eCC--e
Confidence 3455678899999999999999999999999999999999999899999999999999999999999997766 666 8
Q ss_pred CccccccCcccc
Q 015716 88 PLQVKYADGELE 99 (402)
Q Consensus 88 ~~~~~~~~~~~~ 99 (402)
.|.|.++..+..
T Consensus 93 ~l~v~~a~~~~~ 104 (126)
T 3ex7_B 93 PISVDWCFVRGP 104 (126)
T ss_dssp BCEEEESEESSS
T ss_pred EEEEEEecCCCC
Confidence 888888765443
No 106
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.72 E-value=2e-17 Score=128.86 Aligned_cols=84 Identities=21% Similarity=0.333 Sum_probs=74.8
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 015716 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (402)
Q Consensus 8 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~ 87 (402)
.......++|||+|||+++++++|+++|++||.|.+|+++.++ +++++|||||+|.+.++|++|++.||+.. +.| +
T Consensus 23 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~ 98 (107)
T 3ulh_A 23 GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVP-LDG--R 98 (107)
T ss_dssp -CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCE-ETT--E
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCE-eCC--c
Confidence 3455678999999999999999999999999999999999999 89999999999999999999999997776 566 7
Q ss_pred CccccccC
Q 015716 88 PLQVKYAD 95 (402)
Q Consensus 88 ~~~~~~~~ 95 (402)
.|.|.++.
T Consensus 99 ~l~V~~a~ 106 (107)
T 3ulh_A 99 PMNIQLVT 106 (107)
T ss_dssp ECEEEEEC
T ss_pred EEEEEEeC
Confidence 77777653
No 107
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.71 E-value=1.1e-17 Score=125.34 Aligned_cols=83 Identities=14% Similarity=0.369 Sum_probs=74.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCC-cccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCcc
Q 015716 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRA-SRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (402)
Q Consensus 12 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~-~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~ 90 (402)
.+.++|||+|||.++++++|+++|++||.|.+|+++.++.++. ++|||||+|.+.++|++|++.||+.. +.| +.|.
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l~ 78 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQ-IDG--QEIT 78 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCE-ETT--EECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCe-ECC--eEEE
Confidence 4578999999999999999999999999999999999987665 99999999999999999999997766 666 7888
Q ss_pred ccccCcc
Q 015716 91 VKYADGE 97 (402)
Q Consensus 91 ~~~~~~~ 97 (402)
+.++.+.
T Consensus 79 v~~a~~~ 85 (88)
T 4a8x_A 79 ATAVLAP 85 (88)
T ss_dssp EEEECCC
T ss_pred EEECCCC
Confidence 8877544
No 108
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.1e-17 Score=129.13 Aligned_cols=88 Identities=24% Similarity=0.358 Sum_probs=77.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCC-eeEEEEe-eCCCCCCcccEEEEEeCCHHHHHHHHHHhcC-CCCCCCCC
Q 015716 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFAL-VDEVNII-KDKTTRASRGCCFVICPSRQEADKAVNACHN-KKTLPGAS 86 (402)
Q Consensus 10 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~-v~~v~~~-~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~-~~~~~g~~ 86 (402)
...+.++|||+|||.++++++|+++|++||. |.+|.++ .++.+++++|||||+|.+.++|++|++.|++ ...+.|
T Consensus 4 ~s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g-- 81 (109)
T 2dis_A 4 GSSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG-- 81 (109)
T ss_dssp CCCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTT--
T ss_pred cccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecC--
Confidence 3457899999999999999999999999998 9999998 7888899999999999999999999999963 245777
Q ss_pred CCccccccCcccc
Q 015716 87 SPLQVKYADGELE 99 (402)
Q Consensus 87 ~~~~~~~~~~~~~ 99 (402)
+.|.+.++.++..
T Consensus 82 ~~l~V~~a~~~~~ 94 (109)
T 2dis_A 82 HQIAVDWAEPEID 94 (109)
T ss_dssp BCCEEEESCSSCS
T ss_pred CeEEEEEcCCCCC
Confidence 8889888876544
No 109
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4e-17 Score=126.13 Aligned_cols=89 Identities=25% Similarity=0.415 Sum_probs=77.8
Q ss_pred ccccCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCC
Q 015716 6 KEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGA 85 (402)
Q Consensus 6 ~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~ 85 (402)
.......+.++|||+|||.++++++|+++|++||.|.+|+|+.++. .++|||||+|.+.++|++|++.||+.. +.|
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g- 82 (103)
T 2cq3_A 7 GNSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTV-VEG- 82 (103)
T ss_dssp CCSCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCE-ETT-
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCE-ECC-
Confidence 4455677889999999999999999999999999999999999874 389999999999999999999997766 666
Q ss_pred CCCccccccCcccc
Q 015716 86 SSPLQVKYADGELE 99 (402)
Q Consensus 86 ~~~~~~~~~~~~~~ 99 (402)
+.|.+.++.++..
T Consensus 83 -~~l~v~~a~~~~~ 95 (103)
T 2cq3_A 83 -RKIEVNNATARVM 95 (103)
T ss_dssp -EECEEEECCSSCC
T ss_pred -EEEEEEEcccCCC
Confidence 8888888776543
No 110
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=8.2e-18 Score=122.68 Aligned_cols=76 Identities=28% Similarity=0.429 Sum_probs=69.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCcccccc
Q 015716 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYA 94 (402)
Q Consensus 15 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~~~~~ 94 (402)
++|||+|||+++++++|+++|++||+|.+|++++++.+++++|||||+|.+.++|++|++.++ ..+.| +.+.++++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~--~~~~g--~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR--HELDS--KTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT--CCCSS--CCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC--CccCC--EEEEEEec
Confidence 589999999999999999999999999999999999889999999999999999999999986 44776 77776654
No 111
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.4e-17 Score=126.25 Aligned_cols=88 Identities=19% Similarity=0.312 Sum_probs=74.1
Q ss_pred ccccccCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcC-CCCC
Q 015716 4 SKKEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHN-KKTL 82 (402)
Q Consensus 4 ~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~-~~~~ 82 (402)
++..+....+.++|||+|||+++++++|+++|++||.|.+|+++++ +|||||+|.+.++|++|++.|+. ...+
T Consensus 5 s~~~~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~ 78 (101)
T 2cq1_A 5 SSGDKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHL 78 (101)
T ss_dssp CCCCCCCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEE
T ss_pred CCCCCccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceE
Confidence 3445666778899999999999999999999999999999998865 68999999999999999998853 3346
Q ss_pred CCCCCCccccccCcccc
Q 015716 83 PGASSPLQVKYADGELE 99 (402)
Q Consensus 83 ~g~~~~~~~~~~~~~~~ 99 (402)
.| ++|.+.++..+..
T Consensus 79 ~G--r~l~V~~a~~~~~ 93 (101)
T 2cq1_A 79 RN--QPIYIQYSNHKEL 93 (101)
T ss_dssp TT--EECEEEECSCSSC
T ss_pred CC--cEEEEEEcCcccC
Confidence 66 8888888875443
No 112
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.6e-17 Score=128.28 Aligned_cols=86 Identities=23% Similarity=0.444 Sum_probs=74.9
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCC----
Q 015716 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG---- 84 (402)
Q Consensus 9 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g---- 84 (402)
....+.++|||+|||+++++++|+++|++||.|.+|+|+.++ +++++|||||+|.+.++|++|++.||+.. +.+
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~-~~~~~~~ 97 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKF-IKTPPGV 97 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCC-CCCCTTS
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCE-EcCCccc
Confidence 445678999999999999999999999999999999999998 79999999999999999999999998876 432
Q ss_pred --CCCCccccccCc
Q 015716 85 --ASSPLQVKYADG 96 (402)
Q Consensus 85 --~~~~~~~~~~~~ 96 (402)
..+++.+.++++
T Consensus 98 ~~~~~~l~v~~a~p 111 (114)
T 1x5o_A 98 SAPTEPLLCKFSGP 111 (114)
T ss_dssp CCCSSCBEEEECCC
T ss_pred cCCCCceeEEccCC
Confidence 236677766653
No 113
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.71 E-value=2.6e-17 Score=124.63 Aligned_cols=84 Identities=18% Similarity=0.286 Sum_probs=70.3
Q ss_pred ccccCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCC-CCC
Q 015716 6 KEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKT-LPG 84 (402)
Q Consensus 6 ~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~-~~g 84 (402)
++.....++++|||+|||.++|+++|+++|++||.|.+|++++ .||||||+|.+.++|++|++.|++..+ +.|
T Consensus 13 ~~~~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~G 86 (100)
T 3r27_A 13 DDPHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAG 86 (100)
T ss_dssp ----CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETT
T ss_pred cccccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCC
Confidence 3445667889999999999999999999999999999999975 358999999999999999999976642 456
Q ss_pred CCCCccccccCcc
Q 015716 85 ASSPLQVKYADGE 97 (402)
Q Consensus 85 ~~~~~~~~~~~~~ 97 (402)
++|.+.+++.+
T Consensus 87 --r~i~V~~S~~k 97 (100)
T 3r27_A 87 --HPAFVNYSTSQ 97 (100)
T ss_dssp --EEEEEEECSCS
T ss_pred --cEEEEEecccc
Confidence 88888887654
No 114
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.7e-17 Score=126.36 Aligned_cols=87 Identities=22% Similarity=0.435 Sum_probs=76.5
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 015716 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (402)
Q Consensus 8 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~ 87 (402)
..+....++|||+|||+++++++|+++|++||.|.+|+|++++. .++|||||+|.+.++|++|++.||+.. +.| +
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~ 83 (103)
T 2cqi_A 9 MEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRK-ILG--K 83 (103)
T ss_dssp CCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEE-ETT--E
T ss_pred CCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCC-cCC--C
Confidence 44567889999999999999999999999999999999999964 378999999999999999999997766 666 8
Q ss_pred CccccccCcccc
Q 015716 88 PLQVKYADGELE 99 (402)
Q Consensus 88 ~~~~~~~~~~~~ 99 (402)
.|.|.++.....
T Consensus 84 ~l~V~~a~~~~~ 95 (103)
T 2cqi_A 84 EVKVNWATTPSS 95 (103)
T ss_dssp EEEEEECCCTTC
T ss_pred eEEEEECCCCcc
Confidence 888888876544
No 115
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.71 E-value=3.2e-17 Score=127.43 Aligned_cols=87 Identities=38% Similarity=0.671 Sum_probs=77.9
Q ss_pred ccccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEE
Q 015716 99 ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLV 177 (402)
Q Consensus 99 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~ 177 (402)
....++|||+|||.++++++|+++|++||.|.+|++++++ ++.++|||||+|.+.++|.+|++.|||..++.+..+.|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 3447899999999999999999999999999999999987 689999999999999999999999999886655556799
Q ss_pred EEEcCCHH
Q 015716 178 VKWADTEK 185 (402)
Q Consensus 178 v~~a~~~~ 185 (402)
|.++..+.
T Consensus 90 v~~a~~~~ 97 (106)
T 2dgp_A 90 VKPADSES 97 (106)
T ss_dssp EEECCCCS
T ss_pred EEECCccc
Confidence 99998753
No 116
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.71 E-value=2.6e-17 Score=123.57 Aligned_cols=80 Identities=20% Similarity=0.327 Sum_probs=73.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCcccc
Q 015716 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVK 92 (402)
Q Consensus 13 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~~~ 92 (402)
+.++|||+|||.++++++|+++|++||.|.+|+++.++.+++++|||||+|.+.++|++|+ .||+.. +.| +.|.+.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~-~~g--~~l~V~ 80 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESL-FRG--RQIKVI 80 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCE-ETT--EECEEE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCE-ECC--cEEEEE
Confidence 4689999999999999999999999999999999999988999999999999999999999 887766 666 788888
Q ss_pred ccCc
Q 015716 93 YADG 96 (402)
Q Consensus 93 ~~~~ 96 (402)
++++
T Consensus 81 ~a~~ 84 (89)
T 3ucg_A 81 PKRT 84 (89)
T ss_dssp ETTT
T ss_pred EccC
Confidence 7764
No 117
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.4e-17 Score=128.47 Aligned_cols=84 Identities=15% Similarity=0.330 Sum_probs=72.3
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCC-CCCCCCC
Q 015716 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNK-KTLPGAS 86 (402)
Q Consensus 8 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~-~~~~g~~ 86 (402)
+....+.++|||+|||+++++++|+++|++||.|.+|+|+++ +|||||+|.+.++|++|++.|++. ..+.|
T Consensus 25 ~~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~G-- 96 (119)
T 2ad9_A 25 RSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRG-- 96 (119)
T ss_dssp TSCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTT--
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECC--
Confidence 445667899999999999999999999999999999999875 589999999999999999998642 34666
Q ss_pred CCccccccCcccc
Q 015716 87 SPLQVKYADGELE 99 (402)
Q Consensus 87 ~~~~~~~~~~~~~ 99 (402)
++|.|.++..+..
T Consensus 97 r~l~V~~a~~k~~ 109 (119)
T 2ad9_A 97 QPIYIQFSNHKEL 109 (119)
T ss_dssp BCCEEEECSSSSC
T ss_pred eEEEEEEccCCCC
Confidence 8899988875543
No 118
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.70 E-value=5.6e-17 Score=121.21 Aligned_cols=80 Identities=25% Similarity=0.546 Sum_probs=72.7
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEE
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~ 180 (402)
.++|||+|||.++++++|+++|++||.|.++.++++. ++.++|||||+|.+.++|.+|++.|||.. ++|+ .|.|.|
T Consensus 6 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g~--~l~v~~ 82 (87)
T 3bs9_A 6 HFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQW-LGGR--QIRTNW 82 (87)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCE-ETTE--ECEEEE
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCE-ECCe--EEEEEe
Confidence 5789999999999999999999999999999999986 88999999999999999999999999987 6665 689999
Q ss_pred cCCH
Q 015716 181 ADTE 184 (402)
Q Consensus 181 a~~~ 184 (402)
+.++
T Consensus 83 a~~k 86 (87)
T 3bs9_A 83 ATRK 86 (87)
T ss_dssp EC--
T ss_pred cCCC
Confidence 8765
No 119
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.70 E-value=3.8e-17 Score=136.30 Aligned_cols=88 Identities=24% Similarity=0.378 Sum_probs=78.8
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCC
Q 015716 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (402)
Q Consensus 9 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~ 88 (402)
....+.++|||+|||.++++++|+++|++||+|.+|+|+.++.+++++|||||+|.+.++|++||+.||+.. +.+ +.
T Consensus 34 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~-~~g--~~ 110 (156)
T 1h2v_Z 34 KLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTR-LDD--RI 110 (156)
T ss_dssp TTTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSE-ETT--EE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCE-ECC--eE
Confidence 344578999999999999999999999999999999999999999999999999999999999999997766 566 88
Q ss_pred ccccccCcccc
Q 015716 89 LQVKYADGELE 99 (402)
Q Consensus 89 ~~~~~~~~~~~ 99 (402)
|.|.++.+...
T Consensus 111 l~V~~a~~~~~ 121 (156)
T 1h2v_Z 111 IRTDWDAGFKE 121 (156)
T ss_dssp CEEEEESCCCT
T ss_pred EEEEECCCCCC
Confidence 88888875433
No 120
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=4.7e-17 Score=128.25 Aligned_cols=86 Identities=22% Similarity=0.277 Sum_probs=76.5
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 015716 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (402)
Q Consensus 8 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~ 87 (402)
.......++|||+|||.++++++|+++|++||.|.+|+|+.++ +++++|||||+|.+.++|++|++.||+.. +.| +
T Consensus 9 ~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~ 84 (114)
T 2do0_A 9 LQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQL-LFD--R 84 (114)
T ss_dssp CCCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCE-ETT--E
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCE-eCC--C
Confidence 3455678999999999999999999999999999999999998 49999999999999999999999997766 566 7
Q ss_pred CccccccCcc
Q 015716 88 PLQVKYADGE 97 (402)
Q Consensus 88 ~~~~~~~~~~ 97 (402)
.|.|.+++..
T Consensus 85 ~l~v~~a~~~ 94 (114)
T 2do0_A 85 PMHVKMDERA 94 (114)
T ss_dssp ECEEEECSCC
T ss_pred EEEEEEcccC
Confidence 8888877543
No 121
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.70 E-value=1.5e-17 Score=134.96 Aligned_cols=91 Identities=25% Similarity=0.349 Sum_probs=80.8
Q ss_pred cccCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCC
Q 015716 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (402)
Q Consensus 7 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~ 86 (402)
...+..+.++|||+|||.++++++|+++|++||.|.+|+++.++.+++++|||||+|.+.++|++||+.|++.. +.|
T Consensus 40 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~-i~g-- 116 (135)
T 2lea_A 40 PPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAV-LDG-- 116 (135)
T ss_dssp SCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCC-SSS--
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCE-ECC--
Confidence 34456678999999999999999999999999999999999999889999999999999999999999997766 666
Q ss_pred CCccccccCccccc
Q 015716 87 SPLQVKYADGELER 100 (402)
Q Consensus 87 ~~~~~~~~~~~~~~ 100 (402)
+.|.|.++++....
T Consensus 117 ~~l~V~~a~~~~~~ 130 (135)
T 2lea_A 117 RELRVQMARYGRPP 130 (135)
T ss_dssp SCCEEEECCCCCCC
T ss_pred EEEEEEECCCCCCC
Confidence 88898888765443
No 122
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=8.5e-17 Score=123.58 Aligned_cols=83 Identities=28% Similarity=0.469 Sum_probs=75.8
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEE
Q 015716 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (402)
Q Consensus 100 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~ 179 (402)
...++|||+|||.++++++|+++|++||.|.+|.++++.++.++|||||+|.+.++|++|++.|||.. ++|+ .|.|.
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g~--~l~v~ 91 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMT-IKEN--IIKVA 91 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEE-SSSC--EEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCE-ECCE--EEEEE
Confidence 34689999999999999999999999999999999999999999999999999999999999999977 6665 58999
Q ss_pred EcCCHH
Q 015716 180 WADTEK 185 (402)
Q Consensus 180 ~a~~~~ 185 (402)
++.++.
T Consensus 92 ~a~~~~ 97 (100)
T 2do4_A 92 ISNSGP 97 (100)
T ss_dssp ECCCCS
T ss_pred ECCCCC
Confidence 987653
No 123
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.70 E-value=1.1e-17 Score=126.04 Aligned_cols=80 Identities=24% Similarity=0.396 Sum_probs=71.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCcccccc
Q 015716 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYA 94 (402)
Q Consensus 15 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~~~~~ 94 (402)
++|||+|||.++++++|+++|++||+|.+|++++++.+++++|||||+|.+.+ |++|++.||+.. +.| +.|.+.++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~-~~g--~~l~V~~a 77 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTD-FMG--RTIRVTEA 77 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSC-CSS--SSCSEEEC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCE-ECC--eEEEEEEc
Confidence 68999999999999999999999999999999999989999999999999999 999999997766 666 88888887
Q ss_pred Cccc
Q 015716 95 DGEL 98 (402)
Q Consensus 95 ~~~~ 98 (402)
....
T Consensus 78 ~~~~ 81 (90)
T 2ki2_A 78 NPKK 81 (90)
T ss_dssp ----
T ss_pred CCCC
Confidence 6543
No 124
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.70 E-value=1.8e-17 Score=127.38 Aligned_cols=84 Identities=15% Similarity=0.296 Sum_probs=71.3
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-CCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 015716 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDK-TTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (402)
Q Consensus 9 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~-~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~ 87 (402)
......++|||+|||.++++++|+++|++|| |.+|++++++ .+++++|||||+|.+.++|++|+ .|++.. +.| +
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~-~~g--~ 88 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEES-LGN--R 88 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCC-BTT--B
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCE-ECC--e
Confidence 4456789999999999999999999999999 9999999998 68999999999999999999999 887766 666 7
Q ss_pred CccccccCcc
Q 015716 88 PLQVKYADGE 97 (402)
Q Consensus 88 ~~~~~~~~~~ 97 (402)
.|.+.++++.
T Consensus 89 ~l~V~~a~~~ 98 (100)
T 2j76_E 89 RIRVDVADQA 98 (100)
T ss_dssp CCCCEECCCS
T ss_pred EEEEEeccCC
Confidence 8888887654
No 125
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=5.3e-17 Score=125.46 Aligned_cols=88 Identities=24% Similarity=0.275 Sum_probs=76.9
Q ss_pred cccCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCC
Q 015716 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (402)
Q Consensus 7 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~ 86 (402)
.++...+.++|||+|||.++++++|+++|++||.|.+|+|+.++.+++++|||||+|.+.++|++||+. + ..+.|
T Consensus 8 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~-~~~~g-- 82 (103)
T 2cqg_A 8 VKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--R-HMIDG-- 82 (103)
T ss_dssp CSCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--C-EEETT--
T ss_pred CCCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc--C-CeeCC--
Confidence 445667889999999999999999999999999999999999998999999999999999999999985 3 34666
Q ss_pred CCccccccCcccc
Q 015716 87 SPLQVKYADGELE 99 (402)
Q Consensus 87 ~~~~~~~~~~~~~ 99 (402)
+.|.+.++..+..
T Consensus 83 ~~l~v~~a~~~~~ 95 (103)
T 2cqg_A 83 RWCDCKLPNSKQS 95 (103)
T ss_dssp EEEEEECCCTTCC
T ss_pred eEEEEEecCCCCc
Confidence 7888888765543
No 126
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.70 E-value=8.1e-17 Score=119.16 Aligned_cols=79 Identities=23% Similarity=0.536 Sum_probs=72.9
Q ss_pred ceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEEc
Q 015716 103 HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181 (402)
Q Consensus 103 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~a 181 (402)
.+|||+|||.++++++|+++|++||.|.++.++++. ++.++|||||+|.+.++|++|++.|||.. ++|+ .|.|.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~-~~g~--~l~v~~a 78 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQD-LNGR--PLRINWA 78 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCE-ETTE--ECEEEEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCe-eCCc--EEEEEec
Confidence 589999999999999999999999999999999985 79999999999999999999999999987 6665 6899998
Q ss_pred CCH
Q 015716 182 DTE 184 (402)
Q Consensus 182 ~~~ 184 (402)
.++
T Consensus 79 ~~~ 81 (83)
T 3md1_A 79 AKL 81 (83)
T ss_dssp CCC
T ss_pred CcC
Confidence 764
No 127
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.70 E-value=2.5e-17 Score=126.49 Aligned_cols=81 Identities=16% Similarity=0.292 Sum_probs=74.3
Q ss_pred cceEEEcCCCC------CCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCC-Cc
Q 015716 102 EHKLFIGMLPK------NVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEG-SS 173 (402)
Q Consensus 102 ~~~l~v~nlp~------~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g-~~ 173 (402)
.++|||+|||. ++++++|+++|++||.|.+|+|++++ +++++|||||+|.+.++|++|++.|||.. ++| +
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~-~~g~r- 83 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKR-LDLKH- 83 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCB-SSSSC-
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcc-cCCCe-
Confidence 67999999999 99999999999999999999999988 59999999999999999999999999988 666 5
Q ss_pred eeEEEEEcCCHH
Q 015716 174 VPLVVKWADTEK 185 (402)
Q Consensus 174 ~~l~v~~a~~~~ 185 (402)
.|.|.++.++.
T Consensus 84 -~l~V~~a~~~~ 94 (100)
T 3ns6_A 84 -RLFLYTMKDVE 94 (100)
T ss_dssp -BCEEEESHHHH
T ss_pred -EEEEEECchhh
Confidence 58999997654
No 128
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=8e-17 Score=124.06 Aligned_cols=85 Identities=13% Similarity=0.155 Sum_probs=72.1
Q ss_pred ccccCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCC-CCCC
Q 015716 6 KEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKK-TLPG 84 (402)
Q Consensus 6 ~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~-~~~g 84 (402)
.......+.++|||+|||+++++++|+++|++||.|.+|.++++ ||||||+|.+.++|++|++.|++.. .+.|
T Consensus 7 ~~~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~G 80 (104)
T 1wex_A 7 GSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAG 80 (104)
T ss_dssp CSCCCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSS
T ss_pred CCCCcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 34455677899999999999999999999999999999998764 5899999999999999999986543 3566
Q ss_pred CCCCccccccCccc
Q 015716 85 ASSPLQVKYADGEL 98 (402)
Q Consensus 85 ~~~~~~~~~~~~~~ 98 (402)
+.|.+.++..+.
T Consensus 81 --r~l~V~~a~~~~ 92 (104)
T 1wex_A 81 --QQAFFNYSTSKR 92 (104)
T ss_dssp --SBCEEEECSSSS
T ss_pred --EEEEEEEccCcc
Confidence 888888886543
No 129
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.69 E-value=2.8e-17 Score=119.86 Aligned_cols=73 Identities=15% Similarity=0.175 Sum_probs=65.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCcccc
Q 015716 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVK 92 (402)
Q Consensus 13 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~~~ 92 (402)
.+..|||+||++.+||++|+++|.+||+|.++++.. ++|||||+|.++++|++|++.||+.+ +.| +.|++.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~-l~g--r~I~V~ 76 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCV-LAN--TTIFAE 76 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEE-ETT--EEEEEE
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCE-ECC--cEEEEE
Confidence 467899999999999999999999999999999965 67999999999999999999998766 666 777776
Q ss_pred cc
Q 015716 93 YA 94 (402)
Q Consensus 93 ~~ 94 (402)
.+
T Consensus 77 ~A 78 (89)
T 2wbr_A 77 SP 78 (89)
T ss_dssp CC
T ss_pred EC
Confidence 55
No 130
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.69 E-value=1.4e-17 Score=126.67 Aligned_cols=83 Identities=16% Similarity=0.223 Sum_probs=72.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCc
Q 015716 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (402)
Q Consensus 10 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~ 89 (402)
.....++|||+|||+++++++|+++|++||.|.+++++.++.+++++|||||+|.+.++|++|++.||+.. +.| +.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~-~~g--r~l 87 (95)
T 2ek1_A 11 GKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRP-IGS--RKV 87 (95)
T ss_dssp ----CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCE-ETT--EEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCe-ECC--cEE
Confidence 34567999999999999999999999999999999999998889999999999999999999999997766 666 777
Q ss_pred cccccC
Q 015716 90 QVKYAD 95 (402)
Q Consensus 90 ~~~~~~ 95 (402)
.+.++.
T Consensus 88 ~v~~a~ 93 (95)
T 2ek1_A 88 KLSGPS 93 (95)
T ss_dssp EEECCC
T ss_pred EEEecc
Confidence 777654
No 131
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.7e-17 Score=127.00 Aligned_cols=84 Identities=17% Similarity=0.255 Sum_probs=75.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCc
Q 015716 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (402)
Q Consensus 10 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~ 89 (402)
.....++|||+|||+++++++|+++|++||.|.+++++.++.+++++|||||+|.+.++|++|++.||+.. +.| +.|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~-~~g--~~l 87 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRP-IGS--RKV 87 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCE-ETT--EEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCe-eCC--eEE
Confidence 44567899999999999999999999999999999999998889999999999999999999999997766 666 788
Q ss_pred cccccCc
Q 015716 90 QVKYADG 96 (402)
Q Consensus 90 ~~~~~~~ 96 (402)
.|.++..
T Consensus 88 ~V~~a~~ 94 (98)
T 2cqp_A 88 KLVLGSG 94 (98)
T ss_dssp EEEESSC
T ss_pred EEEEcCC
Confidence 8887654
No 132
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.69 E-value=5.7e-17 Score=129.76 Aligned_cols=85 Identities=22% Similarity=0.366 Sum_probs=76.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCc
Q 015716 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (402)
Q Consensus 10 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~ 89 (402)
.....++|||+|||.++++++|+++|++||.|.+|+++.++ +++++|||||+|.+.++|++|++.|++.. +.| +.|
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~-~~g--~~l 106 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVP-LDG--RPM 106 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEE-SSS--CEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCE-ECC--cEE
Confidence 45677899999999999999999999999999999999998 89999999999999999999999997765 666 788
Q ss_pred cccccCccc
Q 015716 90 QVKYADGEL 98 (402)
Q Consensus 90 ~~~~~~~~~ 98 (402)
.|.++....
T Consensus 107 ~V~~a~~~~ 115 (124)
T 2kt5_A 107 DIQLVASQI 115 (124)
T ss_dssp EEEEECCTT
T ss_pred EEEEeCCCC
Confidence 888876543
No 133
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=4.4e-17 Score=124.14 Aligned_cols=83 Identities=22% Similarity=0.223 Sum_probs=73.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHH----HHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCC
Q 015716 10 SSEERVKLFVGQVPKHMTEAQLL----AMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGA 85 (402)
Q Consensus 10 ~~~~~~~l~V~nLp~~~t~~~L~----~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~ 85 (402)
...+.++|||+|||+++++++|+ ++|++||+|.+|+++.++.+ +|||||+|.+.++|++||+.||+.. +.|
T Consensus 5 ~~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~-~~g- 79 (96)
T 2dgx_A 5 SSGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYK-IGS- 79 (96)
T ss_dssp CCSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEE-ETT-
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCE-ECC-
Confidence 34567899999999999999999 99999999999999999865 8999999999999999999998766 666
Q ss_pred CCCccccccCccc
Q 015716 86 SSPLQVKYADGEL 98 (402)
Q Consensus 86 ~~~~~~~~~~~~~ 98 (402)
+.|.|.++.+..
T Consensus 80 -r~l~V~~a~~~~ 91 (96)
T 2dgx_A 80 -KKILVSLATGAS 91 (96)
T ss_dssp -EEEEEEECCCSS
T ss_pred -eEEEEEEcCCCC
Confidence 888888886544
No 134
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=4.1e-17 Score=126.57 Aligned_cols=85 Identities=14% Similarity=0.307 Sum_probs=72.3
Q ss_pred cccccCCCCCCeEEEcCCCCC-CCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCC-CCC
Q 015716 5 KKEKKSSEERVKLFVGQVPKH-MTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNK-KTL 82 (402)
Q Consensus 5 ~~~~~~~~~~~~l~V~nLp~~-~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~-~~~ 82 (402)
++-+.+..+.++|||+|||++ +++++|+++|++||.|.+|+|++ ++|||||+|.+.++|++|++.|++. ..+
T Consensus 16 k~~~~~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l 89 (112)
T 1x4f_A 16 QKFDQKQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWF 89 (112)
T ss_dssp CCCCCSSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCS
T ss_pred hhccccCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceE
Confidence 444556778999999999998 99999999999999999999974 4689999999999999999998643 346
Q ss_pred CCCCCCccccccCcc
Q 015716 83 PGASSPLQVKYADGE 97 (402)
Q Consensus 83 ~g~~~~~~~~~~~~~ 97 (402)
.| +.|.|.++...
T Consensus 90 ~G--r~l~V~~a~~~ 102 (112)
T 1x4f_A 90 QG--RCVKVDLSEKY 102 (112)
T ss_dssp SS--SCCEEEEECSC
T ss_pred CC--EEEEEEECccc
Confidence 66 88888887654
No 135
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.69 E-value=2.4e-17 Score=124.07 Aligned_cols=81 Identities=16% Similarity=0.296 Sum_probs=68.7
Q ss_pred ceEEEcCCCCCCcHHHHHHhhccCC--CeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEE
Q 015716 103 HKLFIGMLPKNVSEAEVSALFSIYG--TIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (402)
Q Consensus 103 ~~l~v~nlp~~~t~~~l~~~f~~~G--~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~ 179 (402)
.+|||+|||+++++++|+++|++|| .|.++++++++ +|+++|||||+|.+.++|++|++.|||.. ++|+ .|.|.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~-~~gr--~i~V~ 78 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRE-LHGQ--NPVVT 78 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSC-SSSC--CCEEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCe-eCCE--EEEEE
Confidence 4799999999999999999999999 99999999987 89999999999999999999999999987 6776 58888
Q ss_pred EcCCHHH
Q 015716 180 WADTEKE 186 (402)
Q Consensus 180 ~a~~~~~ 186 (402)
++.+...
T Consensus 79 ~~~~~~~ 85 (90)
T 3p5t_L 79 PSNKLEH 85 (90)
T ss_dssp CC-----
T ss_pred ECCCCcc
Confidence 8876643
No 136
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=5.5e-17 Score=125.61 Aligned_cols=89 Identities=27% Similarity=0.541 Sum_probs=79.1
Q ss_pred ccccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEE
Q 015716 99 ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLV 177 (402)
Q Consensus 99 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~ 177 (402)
+...++|||+|||.++++++|+++|++||.|.++.++++. ++.++|||||+|.+.++|++|++.|||.. ++|+ .|.
T Consensus 5 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g~--~l~ 81 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGRE-FSGR--ALR 81 (104)
T ss_dssp HHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBS-CSSS--CBE
T ss_pred CCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCe-eCCc--EEE
Confidence 3446899999999999999999999999999999999886 78899999999999999999999999987 6665 589
Q ss_pred EEEcCCHHHHHHH
Q 015716 178 VKWADTEKERQAR 190 (402)
Q Consensus 178 v~~a~~~~~~~~~ 190 (402)
|.++.++..+...
T Consensus 82 v~~a~~~~~~~~~ 94 (104)
T 1p1t_A 82 VDNAASEKNKEEL 94 (104)
T ss_dssp EEETTCTTHHHHH
T ss_pred EEeCCCccchhhh
Confidence 9999987665443
No 137
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1e-16 Score=125.20 Aligned_cols=87 Identities=15% Similarity=0.362 Sum_probs=75.1
Q ss_pred cccCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCC
Q 015716 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (402)
Q Consensus 7 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~ 86 (402)
......+.++|||+|||.++++++|+++|++||.|.+|++..+ ++++|||||+|.+.++|++||+.||+.. +.|
T Consensus 15 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g-- 88 (109)
T 1x4a_A 15 RGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYD-YDG-- 88 (109)
T ss_dssp SCCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCE-ETT--
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCE-ECC--
Confidence 3445667899999999999999999999999999999999664 4589999999999999999999998776 666
Q ss_pred CCccccccCcccc
Q 015716 87 SPLQVKYADGELE 99 (402)
Q Consensus 87 ~~~~~~~~~~~~~ 99 (402)
+.|.|.+++....
T Consensus 89 ~~l~V~~a~~~~~ 101 (109)
T 1x4a_A 89 YRLRVEFPRSGRG 101 (109)
T ss_dssp EECEEECCCCCCC
T ss_pred eEEEEEEcccCCC
Confidence 8888888876543
No 138
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.69 E-value=9.3e-17 Score=122.11 Aligned_cols=82 Identities=23% Similarity=0.405 Sum_probs=74.5
Q ss_pred ccccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEE
Q 015716 99 ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (402)
Q Consensus 99 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v 178 (402)
....++|||+|||.++++++|+++|++||.|.+|.+++++++.++|||||+|.+.++|++|++.|||.. ++|+ .|.|
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g~--~l~V 89 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIR-LYGR--PINV 89 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCE-ETTE--ECEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCE-ECCC--EEEE
Confidence 344689999999999999999999999999999999999889999999999999999999999999987 6665 5888
Q ss_pred EEcCC
Q 015716 179 KWADT 183 (402)
Q Consensus 179 ~~a~~ 183 (402)
.++..
T Consensus 90 ~~a~~ 94 (95)
T 2ywk_A 90 SGPSS 94 (95)
T ss_dssp ECCCC
T ss_pred EEcCC
Confidence 88764
No 139
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.69 E-value=5.1e-17 Score=119.65 Aligned_cols=73 Identities=19% Similarity=0.253 Sum_probs=64.3
Q ss_pred CCeEEEcCCCCCC------CHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 015716 14 RVKLFVGQVPKHM------TEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (402)
Q Consensus 14 ~~~l~V~nLp~~~------t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~ 87 (402)
+++|||+|||..+ ++++|+++|++||+|.+|+++ +.+++++|||||+|.+.++|++|++.||+.. +.| +
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~-~~g--~ 75 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYK-LDK--Q 75 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCC-CSS--S
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcc-cCC--c
Confidence 4799999999999 779999999999999999987 3578999999999999999999999997766 555 4
Q ss_pred -Cccc
Q 015716 88 -PLQV 91 (402)
Q Consensus 88 -~~~~ 91 (402)
.|++
T Consensus 76 ~~l~V 80 (81)
T 2krb_A 76 HTFRV 80 (81)
T ss_dssp SCCCC
T ss_pred eeEEe
Confidence 5554
No 140
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=7.2e-18 Score=132.91 Aligned_cols=83 Identities=24% Similarity=0.380 Sum_probs=74.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCccc
Q 015716 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 91 (402)
Q Consensus 12 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~~ 91 (402)
...++|||+|||.++++++|+++|++||.|.+|+|+.++.+++++|||||+|.+.++|++|| .||+.. +.| +.|.|
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~-~~g--~~l~V 98 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQR-LLG--VPIIV 98 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEE-ETT--EEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCE-eCC--eEEEE
Confidence 45689999999999999999999999999999999999999999999999999999999999 887765 666 78888
Q ss_pred cccCccc
Q 015716 92 KYADGEL 98 (402)
Q Consensus 92 ~~~~~~~ 98 (402)
.++..+.
T Consensus 99 ~~a~~~~ 105 (114)
T 2cq4_A 99 QASQAEK 105 (114)
T ss_dssp EEHHHHH
T ss_pred EecCCCc
Confidence 8776443
No 141
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.8e-17 Score=131.12 Aligned_cols=86 Identities=27% Similarity=0.406 Sum_probs=76.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCc
Q 015716 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (402)
Q Consensus 10 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~ 89 (402)
.....++|||+|||.++++++|+++|++||.|.+|+|+.++.+++++|||||+|.+.++|++||+. ++.. +.| +.|
T Consensus 23 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~-~~g--~~l 98 (116)
T 1x4b_A 23 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHS-IDG--RVV 98 (116)
T ss_dssp HHHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEE-ETT--EEE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcE-ECC--EEE
Confidence 344569999999999999999999999999999999999998999999999999999999999987 5544 666 888
Q ss_pred cccccCcccc
Q 015716 90 QVKYADGELE 99 (402)
Q Consensus 90 ~~~~~~~~~~ 99 (402)
.|.++.++..
T Consensus 99 ~V~~a~~~~~ 108 (116)
T 1x4b_A 99 EPKRAVAREE 108 (116)
T ss_dssp EEECCSSCCC
T ss_pred EEEECCCCcc
Confidence 8888876544
No 142
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=9.2e-17 Score=123.70 Aligned_cols=79 Identities=18% Similarity=0.372 Sum_probs=72.0
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEEc
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~a 181 (402)
.++|||+|||+++|+++|+++|++||.|.+|+|+++..+.++|||||+|.+.++|.+|+. ++|.. ++|+ .|.|.++
T Consensus 11 ~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~-~~gr--~l~V~~~ 86 (103)
T 1s79_A 11 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQK-YKET--DLLILFK 86 (103)
T ss_dssp GGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCC-CTTT--TCEEEEH
T ss_pred CCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCE-ECCE--EEEEEEc
Confidence 679999999999999999999999999999999999889999999999999999999999 88877 7776 4788876
Q ss_pred CCH
Q 015716 182 DTE 184 (402)
Q Consensus 182 ~~~ 184 (402)
...
T Consensus 87 ~~~ 89 (103)
T 1s79_A 87 DDY 89 (103)
T ss_dssp HHH
T ss_pred hHH
Confidence 543
No 143
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.9e-17 Score=127.52 Aligned_cols=86 Identities=26% Similarity=0.456 Sum_probs=75.8
Q ss_pred cccCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCC
Q 015716 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (402)
Q Consensus 7 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~ 86 (402)
........++|||+|||.++++++|+++|++||.|.+|+++.++ +.++|||||+|.+.++|++|++.|++.. +.|
T Consensus 22 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~-~~g-- 96 (109)
T 2err_A 22 NTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTV-VEG-- 96 (109)
T ss_dssp CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCE-ETT--
T ss_pred CccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCE-ECC--
Confidence 34556688999999999999999999999999999999999986 4589999999999999999999997766 666
Q ss_pred CCccccccCcc
Q 015716 87 SPLQVKYADGE 97 (402)
Q Consensus 87 ~~~~~~~~~~~ 97 (402)
+.|.+.++.++
T Consensus 97 ~~l~V~~a~~~ 107 (109)
T 2err_A 97 RKIEVNNATAR 107 (109)
T ss_dssp EECEEEECCCS
T ss_pred EEEEEEECCCC
Confidence 88888887653
No 144
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.69 E-value=1.5e-16 Score=132.18 Aligned_cols=86 Identities=17% Similarity=0.261 Sum_probs=76.6
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCC--CeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEE
Q 015716 101 LEHKLFIGMLPKNVSEAEVSALFSIYG--TIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLV 177 (402)
Q Consensus 101 ~~~~l~v~nlp~~~t~~~l~~~f~~~G--~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~ 177 (402)
..++|||+|||+++++++|+++|++|| .|.+|+|++|+ +|+++|||||+|.+.++|.+|++.|||.. ++|+ .|.
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~-~~Gr--~l~ 130 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKV-LNGE--KVD 130 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCE-ETTE--ECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCE-ECCe--EeE
Confidence 357999999999999999999999999 99999999996 89999999999999999999999999987 6665 689
Q ss_pred EEEcCCHHHHHH
Q 015716 178 VKWADTEKERQA 189 (402)
Q Consensus 178 v~~a~~~~~~~~ 189 (402)
|.++.++.....
T Consensus 131 V~~a~~~~~~~~ 142 (156)
T 3n9u_C 131 VRPATRQNLSQF 142 (156)
T ss_dssp EEECCHHHHHHH
T ss_pred EEEcCCCcchhh
Confidence 999987655443
No 145
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.69 E-value=7.1e-17 Score=134.95 Aligned_cols=87 Identities=26% Similarity=0.374 Sum_probs=78.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCc
Q 015716 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (402)
Q Consensus 10 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~ 89 (402)
.....++|||+|||+++++++|+++|++||.|.+|++++|+.+++++|||||+|.+.++|++|++.||+.. +.| +.|
T Consensus 66 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l 142 (158)
T 2kn4_A 66 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAV-LDG--REL 142 (158)
T ss_dssp CCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEE-SSS--SEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCE-ECC--eEE
Confidence 34567999999999999999999999999999999999998899999999999999999999999998766 666 889
Q ss_pred cccccCcccc
Q 015716 90 QVKYADGELE 99 (402)
Q Consensus 90 ~~~~~~~~~~ 99 (402)
.+.++.+...
T Consensus 143 ~v~~a~~~~~ 152 (158)
T 2kn4_A 143 RVQMARYGRP 152 (158)
T ss_dssp EEEEECCSSC
T ss_pred EEEECCCCCC
Confidence 9888876543
No 146
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.8e-16 Score=120.48 Aligned_cols=80 Identities=29% Similarity=0.551 Sum_probs=73.8
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEE
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~ 180 (402)
.++|||+|||.++++++|+++|++||.|.++.++++. ++.++|||||+|.+.++|++|++.|||.. ++|+ .|.|.+
T Consensus 5 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g~--~l~V~~ 81 (95)
T 2dnz_A 5 SSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFE-LAGR--PMRVGH 81 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCC-SSSS--CCEEEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCe-eCCc--EEEEEE
Confidence 5799999999999999999999999999999999987 68999999999999999999999999987 6665 589999
Q ss_pred cCCH
Q 015716 181 ADTE 184 (402)
Q Consensus 181 a~~~ 184 (402)
+..+
T Consensus 82 a~~~ 85 (95)
T 2dnz_A 82 VTER 85 (95)
T ss_dssp SSCC
T ss_pred cccc
Confidence 8765
No 147
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=7.6e-17 Score=124.73 Aligned_cols=84 Identities=15% Similarity=0.244 Sum_probs=72.3
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeE-EEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCC
Q 015716 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDE-VNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (402)
Q Consensus 8 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~-v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~ 86 (402)
.......++|||+|||+++++++|+++|++||.|.+ |+|+.+ .+++++|||||+|.+.++|++||+. ++. .+.+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~-~~~g-- 83 (104)
T 1wg5_A 9 SPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKE-RIGH-- 83 (104)
T ss_dssp CSSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTC-CSSS--
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-Ccc-hhCC--
Confidence 344567899999999999999999999999999998 888888 5799999999999999999999997 554 4666
Q ss_pred CCccccccCc
Q 015716 87 SPLQVKYADG 96 (402)
Q Consensus 87 ~~~~~~~~~~ 96 (402)
+.|.+.++..
T Consensus 84 r~i~v~~~~~ 93 (104)
T 1wg5_A 84 RYIEIFKSSR 93 (104)
T ss_dssp SCCEEEEECT
T ss_pred cEEEEEECCH
Confidence 6777766543
No 148
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=8.8e-17 Score=123.26 Aligned_cols=83 Identities=30% Similarity=0.457 Sum_probs=75.7
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEE
Q 015716 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (402)
Q Consensus 101 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~ 179 (402)
..++|||+|||.++++++|+++|++||.|.+|.++++. ++.++|||||+|.+.++|++|++.|||.. ++|+ .|.|.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g~--~l~V~ 83 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQV-FQGR--MLHVL 83 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEE-SSSC--EEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCE-ECCc--EEEEE
Confidence 36799999999999999999999999999999999988 89999999999999999999999999977 6665 58999
Q ss_pred EcCCHHH
Q 015716 180 WADTEKE 186 (402)
Q Consensus 180 ~a~~~~~ 186 (402)
++..+..
T Consensus 84 ~a~~~~~ 90 (99)
T 1whw_A 84 PSTIKKE 90 (99)
T ss_dssp ECCCCST
T ss_pred EcCCCcc
Confidence 9987643
No 149
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2.1e-16 Score=122.06 Aligned_cols=82 Identities=24% Similarity=0.434 Sum_probs=75.0
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEE
Q 015716 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (402)
Q Consensus 100 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~ 179 (402)
...++|||+|||.++++++|+++|++||.|.+|.++++ ++.++|||||+|.+.++|++|++.|||.. +.|+ .|.|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g~--~l~V~ 88 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRI-VATK--PLYVA 88 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCB-SSSS--BCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCE-eCCc--EEEEE
Confidence 34789999999999999999999999999999999998 89999999999999999999999999987 6665 58999
Q ss_pred EcCCHH
Q 015716 180 WADTEK 185 (402)
Q Consensus 180 ~a~~~~ 185 (402)
++.++.
T Consensus 89 ~a~~~~ 94 (103)
T 2d9p_A 89 LAQRKE 94 (103)
T ss_dssp ECSSCC
T ss_pred Eecccc
Confidence 988653
No 150
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.68 E-value=1.1e-16 Score=121.21 Aligned_cols=83 Identities=19% Similarity=0.276 Sum_probs=70.6
Q ss_pred CcccccccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcc-cCCCc
Q 015716 95 DGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK-MEGSS 173 (402)
Q Consensus 95 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~-~~g~~ 173 (402)
+......+++|||+|||+++++++|+++|++||.|.+++++++ ||||||+|.+.++|.+|++.|++..+ +.|+
T Consensus 14 ~~~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~-----kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr- 87 (100)
T 3r27_A 14 DPHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK-----KRQALVEFEDVLGACNAVNYAADNQIYIAGH- 87 (100)
T ss_dssp ---CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCEEETTE-
T ss_pred ccccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhcCCCceeCCc-
Confidence 3344455789999999999999999999999999999999864 89999999999999999999998763 4565
Q ss_pred eeEEEEEcCCH
Q 015716 174 VPLVVKWADTE 184 (402)
Q Consensus 174 ~~l~v~~a~~~ 184 (402)
+|.|.+++.+
T Consensus 88 -~i~V~~S~~k 97 (100)
T 3r27_A 88 -PAFVNYSTSQ 97 (100)
T ss_dssp -EEEEEECSCS
T ss_pred -EEEEEecccc
Confidence 6999998764
No 151
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.68 E-value=1.1e-16 Score=119.05 Aligned_cols=79 Identities=29% Similarity=0.497 Sum_probs=72.0
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEE
Q 015716 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (402)
Q Consensus 101 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~ 179 (402)
..++|||+|||.++++++|+++|++||.|.++.++++. ++.++|||||+|.+.++|.+|++.|||.. ++|+ .|.|.
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g~--~l~v~ 82 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESE-LFGR--TIRVN 82 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCE-ETTE--ECEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCE-ECCc--EEEEE
Confidence 46899999999999999999999999999999999884 78899999999999999999999999987 6665 58888
Q ss_pred EcC
Q 015716 180 WAD 182 (402)
Q Consensus 180 ~a~ 182 (402)
|++
T Consensus 83 ~ak 85 (85)
T 3mdf_A 83 LAK 85 (85)
T ss_dssp ECC
T ss_pred EcC
Confidence 874
No 152
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.68 E-value=1.2e-16 Score=121.83 Aligned_cols=83 Identities=20% Similarity=0.411 Sum_probs=75.6
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEE
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~ 180 (402)
.++|||+|||.++++++|+++|++||.|.+++++++. ++.++|||||+|.+.++|.+|++.|||.. ++|+ .|.|.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~-~~g~--~l~V~~ 78 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQ-LGSR--FLKCGY 78 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCE-ETTE--ECEEEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCe-ECCe--EEEEEE
Confidence 4789999999999999999999999999999999986 68999999999999999999999999987 6664 699999
Q ss_pred cCCHHHH
Q 015716 181 ADTEKER 187 (402)
Q Consensus 181 a~~~~~~ 187 (402)
+.++...
T Consensus 79 a~~~~~~ 85 (96)
T 2x1f_A 79 SSNSDIS 85 (96)
T ss_dssp CSCSSGG
T ss_pred cCCCCCC
Confidence 9876543
No 153
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.68 E-value=4.9e-17 Score=126.05 Aligned_cols=84 Identities=17% Similarity=0.218 Sum_probs=73.0
Q ss_pred ccCCCCCCeEEEcCCCCCC------CHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCC
Q 015716 8 KKSSEERVKLFVGQVPKHM------TEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKT 81 (402)
Q Consensus 8 ~~~~~~~~~l~V~nLp~~~------t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~ 81 (402)
.......++|||+|||+.+ ++++|+++|++||.|.+|+++ +.+|+++|||||+|.+.++|++||+.||+..
T Consensus 9 ~~~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~- 85 (105)
T 2nlw_A 9 QEADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYK- 85 (105)
T ss_dssp CSCCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEE-
T ss_pred CCCCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcc-
Confidence 3455568999999999999 789999999999999999988 3578999999999999999999999998766
Q ss_pred CCCCCC-CccccccCc
Q 015716 82 LPGASS-PLQVKYADG 96 (402)
Q Consensus 82 ~~g~~~-~~~~~~~~~ 96 (402)
+.| + .|.+.++..
T Consensus 86 ~~g--~~~l~V~~a~~ 99 (105)
T 2nlw_A 86 LDK--QHTFRVNLFTD 99 (105)
T ss_dssp CST--TCEEEEECSCC
T ss_pred cCC--CceEEEEEcch
Confidence 666 6 788887754
No 154
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=3.7e-17 Score=125.03 Aligned_cols=83 Identities=18% Similarity=0.286 Sum_probs=71.0
Q ss_pred cccCCCCCCeEEEcCCCC-CCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCC-CCCC
Q 015716 7 EKKSSEERVKLFVGQVPK-HMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKK-TLPG 84 (402)
Q Consensus 7 ~~~~~~~~~~l~V~nLp~-~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~-~~~g 84 (402)
.+....+.++|||+|||+ +++++||+++|++||.|.+|+|++++ |||||+|.+.++|++||+.|++.. .+.|
T Consensus 8 ~~~~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k------g~aFVef~~~~~A~~Ai~~l~~~~~~~~G 81 (102)
T 1x4d_A 8 QKGRVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI------NEAFIEMATTEDAQAAVDYYTTTPALVFG 81 (102)
T ss_dssp CCCCCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS------SCEEEEESSHHHHHHHHHHHHHSCCEETT
T ss_pred CCCCCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC------CEEEEEECCHHHHHHHHHHHcCCCceECC
Confidence 344556789999999999 99999999999999999999998754 799999999999999999997543 3566
Q ss_pred CCCCccccccCcc
Q 015716 85 ASSPLQVKYADGE 97 (402)
Q Consensus 85 ~~~~~~~~~~~~~ 97 (402)
++|.|.++...
T Consensus 82 --r~l~V~~a~~~ 92 (102)
T 1x4d_A 82 --KPVRVHLSQKY 92 (102)
T ss_dssp --EECEEEEECCC
T ss_pred --cEEEEEECCCC
Confidence 88888887643
No 155
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.68 E-value=8.4e-17 Score=135.43 Aligned_cols=123 Identities=24% Similarity=0.358 Sum_probs=75.4
Q ss_pred EEeCCHHHHHHHHHHhcCCCCCCCCCCCcccccc---------------------CcccccccceEEEcCCCCCCcHHHH
Q 015716 61 VICPSRQEADKAVNACHNKKTLPGASSPLQVKYA---------------------DGELERLEHKLFIGMLPKNVSEAEV 119 (402)
Q Consensus 61 V~F~~~~~a~~ai~~l~~~~~~~g~~~~~~~~~~---------------------~~~~~~~~~~l~v~nlp~~~t~~~l 119 (402)
.+|.+.++|+.|+..|++... ..+.+.....+. .+......++|||+|||..+++++|
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~-~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L 89 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAK-HRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEI 89 (165)
T ss_dssp --------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHH
T ss_pred hhhhccccccccchhhccccc-cccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHH
Confidence 678888888888887765442 211122211110 1112233678999999999999999
Q ss_pred HHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEEcCCHHHH
Q 015716 120 SALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKER 187 (402)
Q Consensus 120 ~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~a~~~~~~ 187 (402)
+++|++||.|..|.|+.+. ++.++|||||+|.+.++|.+|++.|||.. +.|+ .|.|.|+..+..+
T Consensus 90 ~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~-~~g~--~l~V~~a~~~~~~ 155 (165)
T 1rk8_A 90 QEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAE-IMGQ--TIQVDWCFVKGPK 155 (165)
T ss_dssp HHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCE-ETTE--ECEEEESEECC--
T ss_pred HHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCE-ECCE--EEEEEEecCCCCC
Confidence 9999999999999999985 88999999999999999999999999987 6665 6889998766544
No 156
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=8.2e-17 Score=121.38 Aligned_cols=83 Identities=16% Similarity=0.289 Sum_probs=74.0
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCC
Q 015716 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (402)
Q Consensus 9 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~ 88 (402)
......++|||+|||+++++++|+++|++| .|.+|+++++ .+++++|||||+|.+.++|++|++ ||+.. +.| +.
T Consensus 5 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~-~~g--r~ 78 (91)
T 2dgw_A 5 SSGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREY-MGG--RY 78 (91)
T ss_dssp CCCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEE-ETT--EE
T ss_pred CCCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCce-eCC--cE
Confidence 345678999999999999999999999999 9999999999 679999999999999999999999 87665 666 78
Q ss_pred ccccccCcc
Q 015716 89 LQVKYADGE 97 (402)
Q Consensus 89 ~~~~~~~~~ 97 (402)
|.+.++..+
T Consensus 79 i~v~~a~~~ 87 (91)
T 2dgw_A 79 IEVFREKSG 87 (91)
T ss_dssp EEEEEESSC
T ss_pred EEEEECCcC
Confidence 888877654
No 157
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=6e-17 Score=124.64 Aligned_cols=82 Identities=13% Similarity=0.095 Sum_probs=70.6
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCC
Q 015716 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (402)
Q Consensus 9 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~ 88 (402)
......++|||+|||+++|++||+++|++||. .+|+|++|+ +++++|||||+|.+.++|++||+ +|+ ..+.+ +.
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~-~~~~g--r~ 83 (102)
T 1wez_A 10 FQSTTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDK-ANMQH--RY 83 (102)
T ss_dssp CCCSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSS-CCSSS--SC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCC-CeECC--cE
Confidence 35567899999999999999999999999995 599999998 79999999999999999999995 655 44666 67
Q ss_pred ccccccCc
Q 015716 89 LQVKYADG 96 (402)
Q Consensus 89 ~~~~~~~~ 96 (402)
|.|.++..
T Consensus 84 i~V~~~~~ 91 (102)
T 1wez_A 84 VELFLNST 91 (102)
T ss_dssp CEEEEECC
T ss_pred EEEEECCC
Confidence 77766543
No 158
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=3e-16 Score=120.28 Aligned_cols=82 Identities=22% Similarity=0.504 Sum_probs=73.9
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEE
Q 015716 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (402)
Q Consensus 100 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v 178 (402)
...++|||+|||.++++++|+++|++||.|.+|.|++++ ++.++|||||+|.+.++|++|++ ||+.. ++|+ .|.|
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~-~~g~--~l~V 83 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHD-IMGK--KVEV 83 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCB-SSSC--BCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCE-ECCe--EEEE
Confidence 346899999999999999999999999999999999986 68899999999999999999998 99987 6666 5899
Q ss_pred EEcCCHH
Q 015716 179 KWADTEK 185 (402)
Q Consensus 179 ~~a~~~~ 185 (402)
.++.++.
T Consensus 84 ~~a~~~~ 90 (99)
T 2dgs_A 84 KRAEPRD 90 (99)
T ss_dssp EECCCCC
T ss_pred EECCCCc
Confidence 9987653
No 159
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.68 E-value=4.1e-17 Score=118.29 Aligned_cols=74 Identities=23% Similarity=0.434 Sum_probs=66.3
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCccccc
Q 015716 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKY 93 (402)
Q Consensus 16 ~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~~~~ 93 (402)
+|||+|||+++++++|+++|++||+|.+|.++.++.+++++|||||+|.+.++|++|++. ++.. +.| +.+.+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~-~~g--~~l~v~~ 74 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHN-VGL--SKCEIKV 74 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCC-BTT--BCCCEEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCe-ECC--EEEEEEE
Confidence 699999999999999999999999999999999998999999999999999999999985 4444 666 6666654
No 160
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.67 E-value=1.7e-17 Score=127.74 Aligned_cols=86 Identities=20% Similarity=0.278 Sum_probs=75.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCc
Q 015716 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (402)
Q Consensus 10 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~ 89 (402)
.....++|||+|||.++++++|+++|++||.|.. .++.+..+++++|||||+|.+.++|++||+ |++.. +.| +.|
T Consensus 13 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~-~~g--~~l 87 (101)
T 1fj7_A 13 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLK-VFG--NEI 87 (101)
T ss_dssp TCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCC-BTT--BCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcE-ECC--cEE
Confidence 3456889999999999999999999999999988 777777789999999999999999999999 97766 666 889
Q ss_pred cccccCccccc
Q 015716 90 QVKYADGELER 100 (402)
Q Consensus 90 ~~~~~~~~~~~ 100 (402)
.+.++.++..+
T Consensus 88 ~V~~a~~~~~~ 98 (101)
T 1fj7_A 88 KLEKPKGRDGT 98 (101)
T ss_dssp EEECCSCCCCS
T ss_pred EEEEcCCCCCC
Confidence 99888765544
No 161
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.67 E-value=3.1e-17 Score=131.36 Aligned_cols=83 Identities=22% Similarity=0.349 Sum_probs=74.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCcc
Q 015716 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (402)
Q Consensus 11 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~ 90 (402)
..+.++|||+|||.++++++|+++|++||.|.+|+++.++.+++++|||||+|.+.++|++|+ .||+.. +.| +.|.
T Consensus 33 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~-~~g--~~l~ 108 (124)
T 2jwn_A 33 EIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETV-FRG--RTIK 108 (124)
T ss_dssp HHHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCE-ETT--EECE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCe-ECC--eEEE
Confidence 345789999999999999999999999999999999999888999999999999999999999 787766 666 7888
Q ss_pred ccccCcc
Q 015716 91 VKYADGE 97 (402)
Q Consensus 91 ~~~~~~~ 97 (402)
|.+++..
T Consensus 109 V~~a~~~ 115 (124)
T 2jwn_A 109 VLPKRTN 115 (124)
T ss_dssp EEESSCC
T ss_pred EEECCCC
Confidence 8887644
No 162
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.8e-16 Score=122.43 Aligned_cols=82 Identities=23% Similarity=0.448 Sum_probs=75.0
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEE
Q 015716 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (402)
Q Consensus 100 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v 178 (402)
...++|||+|||.++++++|+++|++||.|.+|.|++++ ++.++|||||+|.+.++|++|++.|||.. ++|+ .|.|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g~--~l~v 89 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFG-YDHL--ILNV 89 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCE-ETTE--ECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCe-eCCc--EEEE
Confidence 347899999999999999999999999999999999986 78999999999999999999999999987 6665 6899
Q ss_pred EEcCCH
Q 015716 179 KWADTE 184 (402)
Q Consensus 179 ~~a~~~ 184 (402)
.++.++
T Consensus 90 ~~a~~~ 95 (103)
T 2cq0_A 90 EWAKPS 95 (103)
T ss_dssp EESSCC
T ss_pred EECCCC
Confidence 998765
No 163
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.6e-16 Score=122.25 Aligned_cols=82 Identities=28% Similarity=0.515 Sum_probs=74.3
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEE
Q 015716 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (402)
Q Consensus 100 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v 178 (402)
...++|||+|||.++++++|+++|++||.|.+|.++++. ++.++|||||+|.+.++|++|++.|||.. ++|+ .|.|
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g~--~l~V 97 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQD-LMGQ--PISV 97 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCB-SSSS--BCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCE-ECCc--EEEE
Confidence 346789999999999999999999999999999999987 68999999999999999999999999987 6665 5888
Q ss_pred EEcCCH
Q 015716 179 KWADTE 184 (402)
Q Consensus 179 ~~a~~~ 184 (402)
.++.++
T Consensus 98 ~~a~~~ 103 (106)
T 1p27_B 98 DWCFVR 103 (106)
T ss_dssp EESEES
T ss_pred EeecCC
Confidence 888654
No 164
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.7e-17 Score=129.52 Aligned_cols=85 Identities=19% Similarity=0.291 Sum_probs=74.5
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCe-eEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCC
Q 015716 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALV-DEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (402)
Q Consensus 8 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v-~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~ 86 (402)
...+.+.++|||+|||+++|+++|+++|++||.| .+|+|++|+ +++++|||||+|.+.++|++||+. |+. .+.|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~-~~~g-- 83 (114)
T 2cpy_A 9 GDVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRK-KLNG-- 83 (114)
T ss_dssp CSCCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSE-EETT--
T ss_pred CCCCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCC-ccCC--
Confidence 3456678999999999999999999999999999 899999999 899999999999999999999987 554 4666
Q ss_pred CCccccccCcc
Q 015716 87 SPLQVKYADGE 97 (402)
Q Consensus 87 ~~~~~~~~~~~ 97 (402)
+.|.|.++..+
T Consensus 84 r~i~v~~a~~~ 94 (114)
T 2cpy_A 84 REAFVHVVTLE 94 (114)
T ss_dssp EEEEEEEECHH
T ss_pred eEEEEEECCHH
Confidence 77888776543
No 165
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.67 E-value=4.1e-16 Score=121.38 Aligned_cols=85 Identities=28% Similarity=0.491 Sum_probs=75.9
Q ss_pred ccccccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCcee
Q 015716 97 ELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVP 175 (402)
Q Consensus 97 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~ 175 (402)
+.....++|||+|||..+++++|+++|++||.|.+|.+++++ ++.++|||||+|.+.++|.+|++.|||.. ++|+ .
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~-i~g~--~ 97 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE-LAGR--P 97 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCC-SSSS--C
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCE-ECCE--E
Confidence 334457899999999999999999999999999999999885 78899999999999999999999999987 6765 5
Q ss_pred EEEEEcCCH
Q 015716 176 LVVKWADTE 184 (402)
Q Consensus 176 l~v~~a~~~ 184 (402)
|.|.++.++
T Consensus 98 l~V~~a~~k 106 (108)
T 2jrs_A 98 MKVGHVTER 106 (108)
T ss_dssp CEEECSCSS
T ss_pred EEEEEcccC
Confidence 889988765
No 166
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.4e-16 Score=119.84 Aligned_cols=81 Identities=27% Similarity=0.385 Sum_probs=73.4
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEE
Q 015716 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (402)
Q Consensus 100 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v 178 (402)
...++|||+|||.++++++|+++|++||.|.+|.+++++ ++.++|||||+|.+.++|++|++.|||.. ++|+ .|.|
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g~--~l~v 89 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGME-LDGR--RIRV 89 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEE-ETTE--EEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCE-ECCE--EEEE
Confidence 346899999999999999999999999999999999987 58899999999999999999999999977 6664 6899
Q ss_pred EEcCC
Q 015716 179 KWADT 183 (402)
Q Consensus 179 ~~a~~ 183 (402)
.++++
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 98864
No 167
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.67 E-value=1.9e-16 Score=124.92 Aligned_cols=80 Identities=30% Similarity=0.525 Sum_probs=74.5
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEEc
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~a 181 (402)
.++|||+|||.++++++|+++|++||.|.+|.|+.+.++.++|||||+|.+.++|++|++.|||.. ++|+ .|.|.++
T Consensus 7 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~-~~g~--~l~V~~a 83 (116)
T 2fy1_A 7 PGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKS-LHGK--AIKVEQA 83 (116)
T ss_dssp CCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCB-CSSS--BCEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCE-ECCE--EEEEEEC
Confidence 679999999999999999999999999999999999899999999999999999999999999987 6665 5899998
Q ss_pred CCH
Q 015716 182 DTE 184 (402)
Q Consensus 182 ~~~ 184 (402)
..+
T Consensus 84 ~~~ 86 (116)
T 2fy1_A 84 KKP 86 (116)
T ss_dssp CCS
T ss_pred CCC
Confidence 764
No 168
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.67 E-value=1.3e-16 Score=125.79 Aligned_cols=79 Identities=24% Similarity=0.481 Sum_probs=71.1
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEEc
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~a 181 (402)
.++|||+|||.++++++|+++|++||.|.+|.++++ +.++|||||+|.+.++|.+|++.|||.. ++|+ .|.|.++
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g~--~l~v~~a 82 (115)
T 3lqv_A 8 NRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT--PETRGTAYVVYEDIFDAKNAVDHLSGFN-VSNR--YLVVLYY 82 (115)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS--TTTTTCEEEEESSHHHHHHHHHHHTTCB-SSSC--BCEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCCcEEEEEECCHHHHHHHHHHcCCCE-ECCe--EEEEEEe
Confidence 679999999999999999999999999999999875 5568999999999999999999999987 6665 5899998
Q ss_pred CCHH
Q 015716 182 DTEK 185 (402)
Q Consensus 182 ~~~~ 185 (402)
.++.
T Consensus 83 ~~~~ 86 (115)
T 3lqv_A 83 NANR 86 (115)
T ss_dssp CHHH
T ss_pred cCCh
Confidence 7643
No 169
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.67 E-value=9.7e-17 Score=131.28 Aligned_cols=82 Identities=24% Similarity=0.393 Sum_probs=73.9
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCC
Q 015716 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (402)
Q Consensus 9 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~ 88 (402)
....+.++|||+|||.++++++|+++|++||+|.+|++++++.+++++|||||+|.+.++|++|++.||+.. +.| +.
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~ 134 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESE-LFG--RT 134 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEE-ETT--EE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCE-ECC--EE
Confidence 345678999999999999999999999999999999999998899999999999999999999999997765 556 67
Q ss_pred ccccc
Q 015716 89 LQVKY 93 (402)
Q Consensus 89 ~~~~~ 93 (402)
|.+.+
T Consensus 135 l~v~~ 139 (140)
T 2ku7_A 135 IRVNL 139 (140)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 76665
No 170
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.67 E-value=4.3e-17 Score=131.75 Aligned_cols=81 Identities=12% Similarity=0.165 Sum_probs=72.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCC---eeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCC
Q 015716 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFAL---VDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (402)
Q Consensus 10 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~---v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~ 86 (402)
...+.++|||+|||+++|+++|+++|++||. |.+|+|++|+. ++++|||||+|.+.++|++||+ ||+.. +.|
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~-l~g-- 114 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRES-MGH-- 114 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEE-SSS--
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCE-ECC--
Confidence 4567899999999999999999999999999 89999999987 9999999999999999999999 86655 666
Q ss_pred CCccccccC
Q 015716 87 SPLQVKYAD 95 (402)
Q Consensus 87 ~~~~~~~~~ 95 (402)
+.|.|.++.
T Consensus 115 r~i~V~~a~ 123 (136)
T 2hgl_A 115 RYIEVFKSH 123 (136)
T ss_dssp SEEEEEECC
T ss_pred EEEEEEECC
Confidence 777776654
No 171
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.67 E-value=2.5e-16 Score=124.21 Aligned_cols=83 Identities=22% Similarity=0.388 Sum_probs=75.5
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEE
Q 015716 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (402)
Q Consensus 100 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v 178 (402)
...++|||+|||.++++++|+++|++||.|.+|+|+++. ++.++|||||+|.+.++|++|++.||+.. ++|+ .|.|
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g~--~l~V 99 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQ-IGMK--RLKV 99 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCE-ETTE--ECEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCE-ECCE--EEEE
Confidence 346899999999999999999999999999999999987 79999999999999999999999999987 6665 6899
Q ss_pred EEcCCHH
Q 015716 179 KWADTEK 185 (402)
Q Consensus 179 ~~a~~~~ 185 (402)
.|+.++.
T Consensus 100 ~~a~~~~ 106 (115)
T 2cpz_A 100 QLKRSKN 106 (115)
T ss_dssp ECCCCSC
T ss_pred EEcCCCC
Confidence 9987653
No 172
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.67 E-value=2.6e-16 Score=124.17 Aligned_cols=83 Identities=23% Similarity=0.509 Sum_probs=75.6
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEE
Q 015716 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (402)
Q Consensus 100 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v 178 (402)
...++|||+|||.++++++|+++|++||.|.+|+|+++. ++.++|||||+|.+.++|++|++.|||.. ++|+ .|.|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g~--~l~V 89 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQW-LGGR--QIRT 89 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCE-ETTE--ECEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCE-ECCE--EEEE
Confidence 347899999999999999999999999999999999986 89999999999999999999999999987 6665 6899
Q ss_pred EEcCCHH
Q 015716 179 KWADTEK 185 (402)
Q Consensus 179 ~~a~~~~ 185 (402)
.|+..+.
T Consensus 90 ~~a~~~~ 96 (115)
T 2dgo_A 90 NWATRKP 96 (115)
T ss_dssp EESSCCC
T ss_pred EEccCCC
Confidence 9998653
No 173
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=5.6e-17 Score=127.07 Aligned_cols=87 Identities=15% Similarity=0.289 Sum_probs=76.3
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHH---HHHHhcCCeeEEEEeeCCCCC---CcccEEEEEeCCHHHHHHHHHHhcCCCCC
Q 015716 9 KSSEERVKLFVGQVPKHMTEAQLL---AMFKEFALVDEVNIIKDKTTR---ASRGCCFVICPSRQEADKAVNACHNKKTL 82 (402)
Q Consensus 9 ~~~~~~~~l~V~nLp~~~t~~~L~---~~f~~~G~v~~v~~~~~~~t~---~~~g~afV~F~~~~~a~~ai~~l~~~~~~ 82 (402)
.+....++|||+|||+++++++|+ ++|++||+|.+|++++++.++ +++|||||+|.+.++|++||+.||+.. +
T Consensus 10 ~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~-~ 88 (111)
T 2cpi_A 10 VRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV-V 88 (111)
T ss_dssp CCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEE-E
T ss_pred ccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCE-E
Confidence 345678899999999999999999 999999999999999987644 566999999999999999999997776 6
Q ss_pred CCCCCCccccccCccc
Q 015716 83 PGASSPLQVKYADGEL 98 (402)
Q Consensus 83 ~g~~~~~~~~~~~~~~ 98 (402)
.| +.|.+.++.++.
T Consensus 89 ~g--r~l~V~~a~~k~ 102 (111)
T 2cpi_A 89 DG--RTLKASLGTTKY 102 (111)
T ss_dssp TT--EEEEEESCCCCS
T ss_pred CC--EEEEEEeccccc
Confidence 66 889988887654
No 174
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.2e-16 Score=122.43 Aligned_cols=83 Identities=20% Similarity=0.365 Sum_probs=75.7
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEE
Q 015716 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (402)
Q Consensus 100 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v 178 (402)
...++|||+|||.++++++|+++|++||.|.+|.++++. ++.++|||||+|.+.++|++|++.|||.. ++|+ .|.|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g~--~l~v 89 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIK-LYGK--PIRV 89 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCB-CSSC--BCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCe-ECCe--EEEE
Confidence 347899999999999999999999999999999999987 78999999999999999999999999987 6665 5899
Q ss_pred EEcCCHH
Q 015716 179 KWADTEK 185 (402)
Q Consensus 179 ~~a~~~~ 185 (402)
.++..+.
T Consensus 90 ~~a~~~~ 96 (105)
T 1x5u_A 90 NKASAHN 96 (105)
T ss_dssp EETTTTS
T ss_pred EECCCCC
Confidence 9987653
No 175
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=3.7e-16 Score=117.51 Aligned_cols=80 Identities=29% Similarity=0.513 Sum_probs=70.8
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCC
Q 015716 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (402)
Q Consensus 9 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~ 88 (402)
....+.++|||+|||.++++++|+++|++||.|.+|+++ +|||||+|.+.++|++|++.||+.. +.| +.
T Consensus 3 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~-~~g--~~ 71 (90)
T 2dnq_A 3 SGSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYK-LHG--VN 71 (90)
T ss_dssp SCSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCB-CSS--CB
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCc-cCC--cE
Confidence 346688999999999999999999999999999999997 5799999999999999999998766 666 88
Q ss_pred ccccccCcccc
Q 015716 89 LQVKYADGELE 99 (402)
Q Consensus 89 ~~~~~~~~~~~ 99 (402)
|.+.++..+..
T Consensus 72 l~v~~a~~~~~ 82 (90)
T 2dnq_A 72 INVEASKNKSK 82 (90)
T ss_dssp CEEECSSCCCC
T ss_pred EEEEECCCCCC
Confidence 88888876544
No 176
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.67 E-value=2.3e-16 Score=126.00 Aligned_cols=83 Identities=12% Similarity=0.277 Sum_probs=71.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHH----HHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCC
Q 015716 10 SSEERVKLFVGQVPKHMTEAQLL----AMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGA 85 (402)
Q Consensus 10 ~~~~~~~l~V~nLp~~~t~~~L~----~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~ 85 (402)
+..+.++|||+|||+.+++++|+ ++|++||.|.+|.+.. +++++|||||+|.+.++|++|++.||+.. +.|
T Consensus 25 ~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~-l~g- 99 (127)
T 2a3j_A 25 HTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYP-FQG- 99 (127)
T ss_dssp CCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCC-CTT-
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCE-eCC-
Confidence 45568899999999999999876 6999999999988754 57899999999999999999999998776 666
Q ss_pred CCCccccccCccc
Q 015716 86 SSPLQVKYADGEL 98 (402)
Q Consensus 86 ~~~~~~~~~~~~~ 98 (402)
++|.|.++..+.
T Consensus 100 -r~l~V~~a~~~~ 111 (127)
T 2a3j_A 100 -NPLVITFSETPQ 111 (127)
T ss_dssp -SCCEEEECCCCC
T ss_pred -CEEEEEEccCcc
Confidence 789998887544
No 177
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.67 E-value=5.9e-17 Score=126.04 Aligned_cols=84 Identities=14% Similarity=0.247 Sum_probs=73.9
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCC---eeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCC
Q 015716 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFAL---VDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (402)
Q Consensus 8 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~---v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g 84 (402)
.....+.++|||+|||+++|+++|+++|++||. |.+|+|+.++. ++++|||||+|.+.++|++||+ +|+.. +.|
T Consensus 5 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~-~~g 81 (107)
T 2lmi_A 5 EEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMY-MGQ 81 (107)
T ss_dssp CCCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCC-SSS
T ss_pred cCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcce-eCC
Confidence 445678899999999999999999999999998 99999999987 9999999999999999999999 76644 666
Q ss_pred CCCCccccccCc
Q 015716 85 ASSPLQVKYADG 96 (402)
Q Consensus 85 ~~~~~~~~~~~~ 96 (402)
+.|.+.++..
T Consensus 82 --r~i~V~~a~~ 91 (107)
T 2lmi_A 82 --RYVEVYEINN 91 (107)
T ss_dssp --SCCCCEECCH
T ss_pred --eEEEEEECCH
Confidence 7777776653
No 178
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3.7e-16 Score=120.70 Aligned_cols=83 Identities=24% Similarity=0.449 Sum_probs=74.3
Q ss_pred cccccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEE
Q 015716 98 LERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLV 177 (402)
Q Consensus 98 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~ 177 (402)
.....++|||+|||.++++++|+++|++||.|.+|+|+++..+ ++|||||+|.+.++|++|++.|||.. ++|+ .|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~-~~g~--~l~ 86 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTV-VEGR--KIE 86 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCE-ETTE--ECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-CcEEEEEEECCHHHHHHHHHHhCCCE-ECCE--EEE
Confidence 3444789999999999999999999999999999999998755 89999999999999999999999987 6665 589
Q ss_pred EEEcCCH
Q 015716 178 VKWADTE 184 (402)
Q Consensus 178 v~~a~~~ 184 (402)
|.++..+
T Consensus 87 v~~a~~~ 93 (103)
T 2cq3_A 87 VNNATAR 93 (103)
T ss_dssp EEECCSS
T ss_pred EEEcccC
Confidence 9998765
No 179
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.9e-16 Score=121.34 Aligned_cols=84 Identities=23% Similarity=0.410 Sum_probs=75.0
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCCee-EEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCc--ee
Q 015716 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIK-DLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSS--VP 175 (402)
Q Consensus 100 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~-~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~--~~ 175 (402)
...++|||+|||.++++++|+++|++||.|. ++++++++ ++.++|||||+|.+.++|++|++.|||.. ++|+. ++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g~~~~~~ 85 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKP-LPGATPAKR 85 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSE-ESSCSSCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCc-cCCCCccee
Confidence 3468999999999999999999999999999 99999987 78999999999999999999999999987 66664 23
Q ss_pred EEEEEcCCH
Q 015716 176 LVVKWADTE 184 (402)
Q Consensus 176 l~v~~a~~~ 184 (402)
|.|.|+...
T Consensus 86 l~v~~a~~~ 94 (99)
T 2div_A 86 FKLNYATYS 94 (99)
T ss_dssp CCEEETTCC
T ss_pred EEEeecCCC
Confidence 889988754
No 180
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.67 E-value=4.2e-16 Score=119.41 Aligned_cols=80 Identities=26% Similarity=0.438 Sum_probs=72.6
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCCeeE--------EEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccC
Q 015716 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKD--------LQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKME 170 (402)
Q Consensus 100 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~--------~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~ 170 (402)
...++|||+|||.++++++|+++|++||.|.+ +++++++ +++++|||||+|.+.++|++|++.|||.. ++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~-~~ 89 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE-FS 89 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB-SS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE-eC
Confidence 33689999999999999999999999999999 9999986 78999999999999999999999999987 67
Q ss_pred CCceeEEEEEcC
Q 015716 171 GSSVPLVVKWAD 182 (402)
Q Consensus 171 g~~~~l~v~~a~ 182 (402)
|+ .|.|.+|.
T Consensus 90 g~--~l~V~~A~ 99 (99)
T 2la6_A 90 GN--PIKVSFAT 99 (99)
T ss_dssp SS--BCEEEECC
T ss_pred Cc--EEEEEecC
Confidence 66 58888763
No 181
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3.1e-17 Score=131.24 Aligned_cols=83 Identities=16% Similarity=0.234 Sum_probs=72.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCc
Q 015716 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (402)
Q Consensus 10 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~ 89 (402)
.....++|||+|||+++|+++|+++|++||.|.++.++.+..+++++|||||+|.+.++|++||+ ||+.. +.| +.|
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~-~~g--r~i 96 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQY-MGN--RFI 96 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBC-STT--SCB
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCe-ECC--cEE
Confidence 34567999999999999999999999999999997777777789999999999999999999999 86655 776 788
Q ss_pred cccccCc
Q 015716 90 QVKYADG 96 (402)
Q Consensus 90 ~~~~~~~ 96 (402)
.|.++..
T Consensus 97 ~V~~a~~ 103 (124)
T 1wel_A 97 QVHPITK 103 (124)
T ss_dssp EEEEECH
T ss_pred EEEECCH
Confidence 8877654
No 182
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=3.4e-16 Score=121.80 Aligned_cols=84 Identities=27% Similarity=0.583 Sum_probs=75.4
Q ss_pred ccccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC--CCCcceEEEEEeCCHHHHHHHHHHH-cCCcccCCCcee
Q 015716 99 ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS--QQTSKGCAFLKYETKEQALAALEAI-NGKHKMEGSSVP 175 (402)
Q Consensus 99 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~--~~~~~g~afV~f~~~~~A~~A~~~l-~g~~~~~g~~~~ 175 (402)
....++|||+|||..+++++|+++|++||.|.+|.|+++. ++.++|||||+|.+.++|++|++.| |+.. +.|+ .
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~-~~g~--~ 88 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTH-LYGR--R 88 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCB-SSSC--B
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCe-ECCC--E
Confidence 3447899999999999999999999999999999999983 8899999999999999999999999 8877 6665 5
Q ss_pred EEEEEcCCHH
Q 015716 176 LVVKWADTEK 185 (402)
Q Consensus 176 l~v~~a~~~~ 185 (402)
|.|.|+.++.
T Consensus 89 l~v~~a~~~~ 98 (107)
T 2cph_A 89 LVLEWADSEV 98 (107)
T ss_dssp CEEEECCCCC
T ss_pred EEEEeCCCCC
Confidence 8999987653
No 183
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=2.6e-16 Score=119.35 Aligned_cols=80 Identities=25% Similarity=0.451 Sum_probs=72.5
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEE
Q 015716 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (402)
Q Consensus 100 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v 178 (402)
...++|||+|||.++++++|+++|++||.|.++.+++++ ++.++|||||+|.+.++|.+|++.|||.. ++|+ .|.|
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g~--~l~v 90 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQ-LFGR--VIKA 90 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEE-ETTE--EEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCe-eCCc--EEEE
Confidence 346799999999999999999999999999999999987 58899999999999999999999999987 6664 6888
Q ss_pred EEcC
Q 015716 179 KWAD 182 (402)
Q Consensus 179 ~~a~ 182 (402)
.|++
T Consensus 91 ~~ak 94 (94)
T 2e5h_A 91 SIAI 94 (94)
T ss_dssp EECC
T ss_pred EecC
Confidence 8874
No 184
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=5e-16 Score=122.29 Aligned_cols=84 Identities=29% Similarity=0.529 Sum_probs=75.3
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCC------Cc
Q 015716 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEG------SS 173 (402)
Q Consensus 100 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g------~~ 173 (402)
...++|||+|||.++++++|+++|++||.|.+|+|+++.++.++|||||+|.+.++|++|++.|||.. +++ ..
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~-~~~~~~~~~~~ 101 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKF-IKTPPGVSAPT 101 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCC-CCCCTTSCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCE-EcCCccccCCC
Confidence 34689999999999999999999999999999999999999999999999999999999999999987 532 23
Q ss_pred eeEEEEEcCCH
Q 015716 174 VPLVVKWADTE 184 (402)
Q Consensus 174 ~~l~v~~a~~~ 184 (402)
++|.|.|++++
T Consensus 102 ~~l~v~~a~p~ 112 (114)
T 1x5o_A 102 EPLLCKFSGPS 112 (114)
T ss_dssp SCBEEEECCCS
T ss_pred CceeEEccCCC
Confidence 46899998754
No 185
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.66 E-value=2.8e-17 Score=159.06 Aligned_cols=80 Identities=23% Similarity=0.493 Sum_probs=73.4
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEE
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~ 180 (402)
.++|||+|||+.+|+++|+++|++||.|+.|.|+.+. ++.++|||||+|.+.++|.+||..|||.. ++|+ .|.|.|
T Consensus 102 ~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~-i~gr--~i~V~~ 178 (437)
T 3pgw_S 102 FKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKK-IDGR--RVLVDV 178 (437)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCE-ECCE--EEEEEE
Confidence 5799999999999999999999999999999999986 78999999999999999999999999987 6665 588888
Q ss_pred cCCH
Q 015716 181 ADTE 184 (402)
Q Consensus 181 a~~~ 184 (402)
+..+
T Consensus 179 a~~~ 182 (437)
T 3pgw_S 179 ERGR 182 (437)
T ss_pred eCCC
Confidence 8754
No 186
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=3.4e-16 Score=119.48 Aligned_cols=84 Identities=19% Similarity=0.297 Sum_probs=72.1
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 015716 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (402)
Q Consensus 8 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~ 87 (402)
.....+.++|||+|||.++++++|+++|++||.|.+|++..+ +|||||+|.+.++|++|++.||+.. +.+..+
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~-~~~~g~ 83 (97)
T 1why_A 11 YGKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFP-LGGPDR 83 (97)
T ss_dssp CCCCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCB-CSSSSC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCE-eCCCCc
Confidence 345667899999999999999999999999999999998754 6799999999999999999998776 552238
Q ss_pred CccccccCccc
Q 015716 88 PLQVKYADGEL 98 (402)
Q Consensus 88 ~~~~~~~~~~~ 98 (402)
.|.+.++.++.
T Consensus 84 ~l~V~~a~~~~ 94 (97)
T 1why_A 84 RLRVDFAKSGP 94 (97)
T ss_dssp BCEEEECCCCC
T ss_pred EEEEEECCCCC
Confidence 89998887654
No 187
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.66 E-value=1.6e-16 Score=128.38 Aligned_cols=82 Identities=15% Similarity=0.142 Sum_probs=74.0
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCC---eeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeE
Q 015716 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGT---IKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPL 176 (402)
Q Consensus 100 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~---v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l 176 (402)
...++|||+|||+++|+++|+++|++||. |.+|+|++++.|+++|||||+|.+.++|++|++ +|+.. ++|+ .|
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~-l~gr--~i 117 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRES-MGHR--YI 117 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEE-SSSS--EE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCE-ECCE--EE
Confidence 34689999999999999999999999999 899999999889999999999999999999999 99976 7776 58
Q ss_pred EEEEcCCHH
Q 015716 177 VVKWADTEK 185 (402)
Q Consensus 177 ~v~~a~~~~ 185 (402)
.|.++..+.
T Consensus 118 ~V~~a~~~e 126 (136)
T 2hgl_A 118 EVFKSHRTE 126 (136)
T ss_dssp EEEECCHHH
T ss_pred EEEECChHH
Confidence 888886543
No 188
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.66 E-value=9.7e-17 Score=142.09 Aligned_cols=81 Identities=17% Similarity=0.311 Sum_probs=73.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcC--CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCcc
Q 015716 13 ERVKLFVGQVPKHMTEAQLLAMFKEFA--LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (402)
Q Consensus 13 ~~~~l~V~nLp~~~t~~~L~~~f~~~G--~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~ 90 (402)
..++|||+|||+++|+++|+++|++|| .|++|+|++|+.+++++|||||+|.+.++|++||+.||+.. +.| +.|.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~-~~G--r~l~ 143 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRE-LHG--QNPV 143 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSC-BTT--BCCE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCe-ECC--EEeE
Confidence 678899999999999999999999999 99999999999999999999999999999999999997766 666 7888
Q ss_pred ccccCc
Q 015716 91 VKYADG 96 (402)
Q Consensus 91 ~~~~~~ 96 (402)
|.++..
T Consensus 144 V~~a~~ 149 (229)
T 3q2s_C 144 VTPVNK 149 (229)
T ss_dssp EEECCH
T ss_pred EEECCC
Confidence 887654
No 189
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=3.9e-16 Score=122.92 Aligned_cols=82 Identities=24% Similarity=0.418 Sum_probs=74.8
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEE
Q 015716 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (402)
Q Consensus 100 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~ 179 (402)
...++|||+|||.++++++|+++|++||.|.+|+|+++.++.++|||||+|.+.++|++|++.|||.. ++|+ .|.|.
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g~--~l~v~ 89 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQL-LFDR--PMHVK 89 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCE-ETTE--ECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCE-eCCC--EEEEE
Confidence 34689999999999999999999999999999999999899999999999999999999999999987 6665 58899
Q ss_pred EcCCH
Q 015716 180 WADTE 184 (402)
Q Consensus 180 ~a~~~ 184 (402)
+++..
T Consensus 90 ~a~~~ 94 (114)
T 2do0_A 90 MDERA 94 (114)
T ss_dssp ECSCC
T ss_pred EcccC
Confidence 88753
No 190
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.66 E-value=3.9e-16 Score=121.41 Aligned_cols=80 Identities=29% Similarity=0.475 Sum_probs=73.5
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEE
Q 015716 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (402)
Q Consensus 100 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~ 179 (402)
...++|||+|||..+++++|+++|++||.|.+|.|+++.++.++|||||+|.+.++|++|++.|||.. ++|+ .|.|.
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g~--~l~V~ 103 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVP-LDGR--PMNIQ 103 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCE-ETTE--ECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCE-eCCc--EEEEE
Confidence 34689999999999999999999999999999999999999999999999999999999999999987 6665 58888
Q ss_pred EcC
Q 015716 180 WAD 182 (402)
Q Consensus 180 ~a~ 182 (402)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 191
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.66 E-value=3e-16 Score=120.72 Aligned_cols=79 Identities=22% Similarity=0.529 Sum_probs=69.7
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCC
Q 015716 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (402)
Q Consensus 9 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~ 88 (402)
......++|||+|||.++++++|+++|++||.|.+|++. +++|||||+|.+.++|++|++.||+.. +.| +.
T Consensus 22 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~-~~g--~~ 92 (101)
T 2la4_A 22 SAPPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFP-FQG--RN 92 (101)
T ss_dssp TSCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCE-ETT--EE
T ss_pred cCCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCe-ECC--eE
Confidence 345568999999999999999999999999999999997 356899999999999999999997766 666 88
Q ss_pred ccccccCc
Q 015716 89 LQVKYADG 96 (402)
Q Consensus 89 ~~~~~~~~ 96 (402)
|.+.++++
T Consensus 93 l~V~~a~~ 100 (101)
T 2la4_A 93 LRTGWGKE 100 (101)
T ss_dssp CCCCBCCC
T ss_pred EEEEeccC
Confidence 88888764
No 192
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.4e-16 Score=121.52 Aligned_cols=81 Identities=32% Similarity=0.561 Sum_probs=73.8
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEE
Q 015716 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (402)
Q Consensus 101 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~ 179 (402)
..++|||+|||.++++++|+++|++||.|.+|.+++++ ++.++|||||+|.+.++|++|++.||+.. ++|+ .|.|.
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g~--~l~v~ 87 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKS-VDGR--QIRVD 87 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCC-TTSC--CCEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCE-ECCe--EEEEE
Confidence 46899999999999999999999999999999999986 78899999999999999999999999987 6665 58888
Q ss_pred EcCCH
Q 015716 180 WADTE 184 (402)
Q Consensus 180 ~a~~~ 184 (402)
++.++
T Consensus 88 ~a~~~ 92 (102)
T 1x5s_A 88 QAGKS 92 (102)
T ss_dssp EEECC
T ss_pred ECCCC
Confidence 88764
No 193
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=2.1e-16 Score=122.01 Aligned_cols=82 Identities=24% Similarity=0.387 Sum_probs=74.6
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEE
Q 015716 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (402)
Q Consensus 100 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v 178 (402)
...++|||+|||.++++++|+++|++||.|.+|.|+++. ++.++|||||+|.+.++|++|++.|||.. ++|+ .|.|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g~--~l~V 87 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAE-LDGR--ELRV 87 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCC-BTTB--CCEE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCE-ECCc--EEEE
Confidence 346899999999999999999999999999999999987 58899999999999999999999999987 6665 5899
Q ss_pred EEcCCH
Q 015716 179 KWADTE 184 (402)
Q Consensus 179 ~~a~~~ 184 (402)
.++...
T Consensus 88 ~~a~~~ 93 (103)
T 2dnm_A 88 QVARYG 93 (103)
T ss_dssp EECSSC
T ss_pred EECCcC
Confidence 998764
No 194
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.66 E-value=2e-16 Score=133.13 Aligned_cols=86 Identities=21% Similarity=0.287 Sum_probs=76.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCc
Q 015716 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (402)
Q Consensus 10 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~ 89 (402)
...+.++|||+|||+.+++++|+++|++||.|.+|.|+.++.++.++|||||+|.+.++|++||+.||+.. +.| +.|
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~-~~g--~~l 144 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAE-IMG--QTI 144 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCE-ETT--EEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCE-ECC--EEE
Confidence 34566789999999999999999999999999999999999899999999999999999999999998766 666 788
Q ss_pred cccccCccc
Q 015716 90 QVKYADGEL 98 (402)
Q Consensus 90 ~~~~~~~~~ 98 (402)
.|.++....
T Consensus 145 ~V~~a~~~~ 153 (165)
T 1rk8_A 145 QVDWCFVKG 153 (165)
T ss_dssp EEEESEECC
T ss_pred EEEEecCCC
Confidence 888876543
No 195
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.66 E-value=5.3e-17 Score=128.57 Aligned_cols=82 Identities=13% Similarity=0.167 Sum_probs=72.0
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCC---eeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCC
Q 015716 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFAL---VDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGA 85 (402)
Q Consensus 9 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~---v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~ 85 (402)
....+.++|||+|||+++|+++|+++|++||. |.+|+|++++. ++++|||||+|.+.++|++||+ +|+.. +.|
T Consensus 12 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~-~~g- 87 (118)
T 2db1_A 12 PEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRES-MGH- 87 (118)
T ss_dssp SCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEE-ETT-
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCe-ECC-
Confidence 34567899999999999999999999999999 89999999987 9999999999999999999999 86654 666
Q ss_pred CCCccccccC
Q 015716 86 SSPLQVKYAD 95 (402)
Q Consensus 86 ~~~~~~~~~~ 95 (402)
+.|.|.++.
T Consensus 88 -r~i~V~~a~ 96 (118)
T 2db1_A 88 -RYIEVFKSH 96 (118)
T ss_dssp -EEEEEEEEC
T ss_pred -eEEEEEECC
Confidence 677776554
No 196
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=2.5e-16 Score=120.67 Aligned_cols=85 Identities=31% Similarity=0.476 Sum_probs=73.8
Q ss_pred cccccCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCC
Q 015716 5 KKEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (402)
Q Consensus 5 ~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g 84 (402)
........+.++|||+|||+++++++|+++|++||+|.+|++.++ +|||||+|.+.++|++|++.||+.. +.|
T Consensus 6 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~-~~g 78 (99)
T 2cpj_A 6 SGGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMP-LRG 78 (99)
T ss_dssp SCCSCCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCC-BTT
T ss_pred CCCCCcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCE-eCC
Confidence 344556678899999999999999999999999999999999854 5899999999999999999998776 666
Q ss_pred CCCCccccccCccc
Q 015716 85 ASSPLQVKYADGEL 98 (402)
Q Consensus 85 ~~~~~~~~~~~~~~ 98 (402)
+.|.+.++.++.
T Consensus 79 --~~l~v~~a~~~~ 90 (99)
T 2cpj_A 79 --KQLRVRFACHSA 90 (99)
T ss_dssp --BCCEEEESSCCS
T ss_pred --ceEEEEEcCCCC
Confidence 888888877543
No 197
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1e-16 Score=122.59 Aligned_cols=77 Identities=26% Similarity=0.465 Sum_probs=68.0
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCC-cccCCCceeEEEE
Q 015716 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK-HKMEGSSVPLVVK 179 (402)
Q Consensus 101 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~~g~~~~l~v~ 179 (402)
..++|||+|||+++++++|+++|++||+|.+|+|+++ ||||||+|.+.++|.+|++.|++. ..+.|+ +|.|.
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr--~l~V~ 87 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQ--PIYIQ 87 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTSCCEETTE--ECCBC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhccCCceECCE--EEEEE
Confidence 3689999999999999999999999999999999986 899999999999999999988753 336665 68899
Q ss_pred EcCCH
Q 015716 180 WADTE 184 (402)
Q Consensus 180 ~a~~~ 184 (402)
|+..+
T Consensus 88 ~A~~~ 92 (105)
T 1sjq_A 88 FSNHK 92 (105)
T ss_dssp CCSSS
T ss_pred EcCCC
Confidence 98765
No 198
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=2e-16 Score=121.95 Aligned_cols=89 Identities=25% Similarity=0.335 Sum_probs=77.5
Q ss_pred cccccCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCC
Q 015716 5 KKEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (402)
Q Consensus 5 ~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g 84 (402)
..........++|||+|||.++++++|+++|++| .+|+++.++.+++++|||||+|.+.++|++||+.||+.. +.|
T Consensus 6 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g 81 (102)
T 2fc8_A 6 SGPNARSQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGE-IDG 81 (102)
T ss_dssp CTTSSSSCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCE-ETT
T ss_pred CCCCCCCCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCe-ECC
Confidence 3445667789999999999999999999999977 478899998889999999999999999999999998766 666
Q ss_pred CCCCccccccCcccc
Q 015716 85 ASSPLQVKYADGELE 99 (402)
Q Consensus 85 ~~~~~~~~~~~~~~~ 99 (402)
+.|.|.++.++.+
T Consensus 82 --~~l~V~~a~~~~~ 94 (102)
T 2fc8_A 82 --NKVTLDWAKPKGE 94 (102)
T ss_dssp --EECEEEECCCCCS
T ss_pred --eEEEEEEecCCCC
Confidence 7889888876554
No 199
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.8e-16 Score=120.62 Aligned_cols=83 Identities=28% Similarity=0.517 Sum_probs=74.0
Q ss_pred ccccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEE
Q 015716 99 ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (402)
Q Consensus 99 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v 178 (402)
....++|||+|||.++++++|+++|++||.|.+|.|+++..+ ++|||||+|.+.++|++|++.|||.. +.|+ .|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~-~~g~--~l~V 87 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMNGRK-ILGK--EVKV 87 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS-SCCEEEEEESSHHHHHHHHHHHTTEE-ETTE--EEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC-CCCEEEEEECCHHHHHHHHHHhCCCC-cCCC--eEEE
Confidence 344789999999999999999999999999999999998644 68999999999999999999999987 6664 6999
Q ss_pred EEcCCHH
Q 015716 179 KWADTEK 185 (402)
Q Consensus 179 ~~a~~~~ 185 (402)
.|+..+.
T Consensus 88 ~~a~~~~ 94 (103)
T 2cqi_A 88 NWATTPS 94 (103)
T ss_dssp EECCCTT
T ss_pred EECCCCc
Confidence 9998754
No 200
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2e-16 Score=121.99 Aligned_cols=82 Identities=28% Similarity=0.483 Sum_probs=74.6
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEE
Q 015716 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (402)
Q Consensus 101 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~ 179 (402)
..++|||+|||.++++++|+++|++||.|.+|.|+++. ++.++|||||+|.+.++|++|++.|||.. ++|+ .|.|.
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g~--~l~V~ 87 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESE-LFGR--TIRVN 87 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEE-ETTE--EEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCE-ECCc--EEEEE
Confidence 46899999999999999999999999999999999985 78899999999999999999999999977 6665 68999
Q ss_pred EcCCHH
Q 015716 180 WADTEK 185 (402)
Q Consensus 180 ~a~~~~ 185 (402)
++.++.
T Consensus 88 ~a~~~~ 93 (102)
T 2cqb_A 88 LAKPMR 93 (102)
T ss_dssp ECCCCC
T ss_pred eCCCCC
Confidence 987653
No 201
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.65 E-value=4.6e-16 Score=117.47 Aligned_cols=80 Identities=24% Similarity=0.351 Sum_probs=72.8
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEE
Q 015716 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (402)
Q Consensus 101 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~ 180 (402)
..++|||+|||.++++++|+++|++||.|.+++++++ ++.++|||||+|.+.++|++|++.|||.. ++|+ .|.|.+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~-~g~~~g~afV~f~~~~~a~~a~~~l~g~~-~~g~--~l~v~~ 82 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMK-LSGR--EIDVRI 82 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES-SSCEEEEEEEEESSHHHHHHHHHHHTTCC-BTTB--CCCCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc-CCCcceEEEEEECCHHHHHHHHHHhCCCE-ECCc--EEEEEE
Confidence 4689999999999999999999999999999999985 78899999999999999999999999987 6766 588888
Q ss_pred cCCH
Q 015716 181 ADTE 184 (402)
Q Consensus 181 a~~~ 184 (402)
+.+.
T Consensus 83 a~~~ 86 (92)
T 2dgv_A 83 DRNA 86 (92)
T ss_dssp CSCC
T ss_pred cCCC
Confidence 8754
No 202
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=3.6e-16 Score=116.19 Aligned_cols=80 Identities=25% Similarity=0.478 Sum_probs=68.7
Q ss_pred cccCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCC
Q 015716 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (402)
Q Consensus 7 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~ 86 (402)
....+...++|||+|||.++++++|+++|++||.|.+|+++++ +|||||+|.+.++|++|++.|++...+.|
T Consensus 5 ~~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g-- 76 (85)
T 2ytc_A 5 SSGEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNG-- 76 (85)
T ss_dssp CCCSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETT--
T ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECC--
Confidence 3445678899999999999999999999999999999999864 68999999999999999999844444666
Q ss_pred CCcccccc
Q 015716 87 SPLQVKYA 94 (402)
Q Consensus 87 ~~~~~~~~ 94 (402)
+.+.+.++
T Consensus 77 ~~l~v~~a 84 (85)
T 2ytc_A 77 RRLNVKWG 84 (85)
T ss_dssp EECCEEEC
T ss_pred CEEEEEec
Confidence 77777765
No 203
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=4.5e-16 Score=121.92 Aligned_cols=83 Identities=28% Similarity=0.461 Sum_probs=74.9
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHc------CCcccCCC
Q 015716 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAIN------GKHKMEGS 172 (402)
Q Consensus 100 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~------g~~~~~g~ 172 (402)
...++|||+|||+++++++|+++|++||.|.+|+|+++. ++.++|||||+|.+.++|.+|++.|| +.. ++|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~-~~g~ 91 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLK-LDGR 91 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEE-SSSC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcE-EcCE
Confidence 346899999999999999999999999999999999986 68899999999999999999999999 866 6765
Q ss_pred ceeEEEEEcCCHH
Q 015716 173 SVPLVVKWADTEK 185 (402)
Q Consensus 173 ~~~l~v~~a~~~~ 185 (402)
.|.|.++.++.
T Consensus 92 --~l~v~~a~~~~ 102 (111)
T 1x4h_A 92 --QLKVDLAVTRD 102 (111)
T ss_dssp --EEEEECCCCCC
T ss_pred --EEEEEECCCCc
Confidence 58999987653
No 204
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=3e-16 Score=121.43 Aligned_cols=82 Identities=22% Similarity=0.352 Sum_probs=74.4
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhcc-CCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEE
Q 015716 101 LEHKLFIGMLPKNVSEAEVSALFSI-YGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (402)
Q Consensus 101 ~~~~l~v~nlp~~~t~~~l~~~f~~-~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~ 179 (402)
..++|||+|||.++++++|+++|++ ||.|.+|.|+++.++.++|||||+|.+.++|.+|++.|||...++|+ .|.|.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~--~l~v~ 85 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSK--PVRLS 85 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSS--CCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCE--eEEEE
Confidence 3689999999999999999999999 99999999999999999999999999999999999999997635665 58888
Q ss_pred EcCCH
Q 015716 180 WADTE 184 (402)
Q Consensus 180 ~a~~~ 184 (402)
++.++
T Consensus 86 ~a~~~ 90 (104)
T 2dhg_A 86 VAIPK 90 (104)
T ss_dssp BCCCC
T ss_pred EccCC
Confidence 88654
No 205
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=7.5e-17 Score=127.25 Aligned_cols=88 Identities=23% Similarity=0.347 Sum_probs=72.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCc
Q 015716 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (402)
Q Consensus 10 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~ 89 (402)
...+.++|||+|||.++++++|+++|++||.|.+|.+..+..+++++|||||+|.+.++|++|++.||+.. +.| +.|
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~-~~g--~~l 97 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYK-LYG--KIL 97 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCB-CSS--CBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCE-eCC--cEE
Confidence 34567999999999999999999999999999544333332268899999999999999999999998766 566 889
Q ss_pred cccccCccccc
Q 015716 90 QVKYADGELER 100 (402)
Q Consensus 90 ~~~~~~~~~~~ 100 (402)
.+.++......
T Consensus 98 ~v~~a~~~~~~ 108 (115)
T 2cpx_A 98 VIEFGKNKKQR 108 (115)
T ss_dssp EEEECCCCSCC
T ss_pred EEEEccCCCCC
Confidence 98888765443
No 206
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=5.2e-16 Score=118.44 Aligned_cols=81 Identities=20% Similarity=0.351 Sum_probs=70.0
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCC
Q 015716 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (402)
Q Consensus 9 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~ 88 (402)
.+....++|||+|||+++++++|+++|++||.|. ++++.+ +++|||||+|.+.++|++|++.||+.. +.| +.
T Consensus 14 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~ 85 (97)
T 2e5j_A 14 EGAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLR-LGT--DT 85 (97)
T ss_dssp SSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCC-SSS--SC
T ss_pred CCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCE-ECC--cE
Confidence 3455689999999999999999999999999997 677654 578999999999999999999998766 666 78
Q ss_pred ccccccCcc
Q 015716 89 LQVKYADGE 97 (402)
Q Consensus 89 ~~~~~~~~~ 97 (402)
|.|.++.++
T Consensus 86 l~V~~a~~~ 94 (97)
T 2e5j_A 86 LRVALARQQ 94 (97)
T ss_dssp CEEEECCCC
T ss_pred EEEEEcCCC
Confidence 888887654
No 207
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.65 E-value=3.8e-16 Score=122.16 Aligned_cols=83 Identities=34% Similarity=0.524 Sum_probs=74.9
Q ss_pred ccccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEE
Q 015716 99 ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLV 177 (402)
Q Consensus 99 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~ 177 (402)
....++|||+|||.++++++|+++|++||.|.+|.++++. ++.++|||||+|.+.++|.+|++.|||.. ++|+ .|.
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~-~~g~--~l~ 99 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAE-IMGQ--TIQ 99 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCE-ETTE--ECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCE-ECCc--EEE
Confidence 3446899999999999999999999999999999999886 78999999999999999999999999987 6665 689
Q ss_pred EEEcCCH
Q 015716 178 VKWADTE 184 (402)
Q Consensus 178 v~~a~~~ 184 (402)
|.|+.++
T Consensus 100 V~~a~~~ 106 (110)
T 1oo0_B 100 VDWCFVK 106 (110)
T ss_dssp EEESEES
T ss_pred EEEcccC
Confidence 9988754
No 208
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.65 E-value=3e-16 Score=126.16 Aligned_cols=83 Identities=28% Similarity=0.414 Sum_probs=74.9
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEE
Q 015716 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (402)
Q Consensus 100 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v 178 (402)
...++|||+|||.++++++|+++|++||.|.+|+|++++ ++.++|||||+|.+.++|++|++.|||.. ++|+ .|.|
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~-i~g~--~l~V 120 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGME-LDGR--RIRV 120 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCC-SSSS--CCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCE-ECCE--EEEE
Confidence 346899999999999999999999999999999999986 68899999999999999999999999987 6665 5889
Q ss_pred EEcCCHH
Q 015716 179 KWADTEK 185 (402)
Q Consensus 179 ~~a~~~~ 185 (402)
.|+.+++
T Consensus 121 ~~a~~~~ 127 (129)
T 2kxn_B 121 DFSITKR 127 (129)
T ss_dssp SCCSSSS
T ss_pred EEecCCC
Confidence 8887653
No 209
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2e-16 Score=120.53 Aligned_cols=81 Identities=31% Similarity=0.530 Sum_probs=74.0
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCCeeEE-EEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEE
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL-QILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~-~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~ 179 (402)
.++|||+|||.++++++|+++|++||.|.++ .|++++ ++.++|||||+|.+.++|++|++.|||.. ++|+ .|.|.
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g~--~l~v~ 81 (96)
T 1x5t_A 5 SSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQY-LCNR--PITVS 81 (96)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCE-ETTE--ECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCE-ECCE--EEEEE
Confidence 6799999999999999999999999999999 999984 88999999999999999999999999988 6664 68999
Q ss_pred EcCCHH
Q 015716 180 WADTEK 185 (402)
Q Consensus 180 ~a~~~~ 185 (402)
++.++.
T Consensus 82 ~a~~~~ 87 (96)
T 1x5t_A 82 YAFKKD 87 (96)
T ss_dssp ESCCCC
T ss_pred EecccC
Confidence 987653
No 210
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.46 E-value=1.1e-17 Score=132.34 Aligned_cols=88 Identities=19% Similarity=0.394 Sum_probs=78.5
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeE--------EEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCC
Q 015716 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDE--------VNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKK 80 (402)
Q Consensus 9 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~--------v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~ 80 (402)
++..+.++|||+|||.++++++|+++|++||.|.+ |+++.++.+++++|||||+|.+.++|++|++.|++..
T Consensus 2 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 81 (116)
T 2lcw_A 2 QDNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 81 (116)
Confidence 34567899999999999999999999999999999 9999998889999999999999999999999997766
Q ss_pred CCCCCCCCccccccCcccc
Q 015716 81 TLPGASSPLQVKYADGELE 99 (402)
Q Consensus 81 ~~~g~~~~~~~~~~~~~~~ 99 (402)
+.| +.|.|.++.++..
T Consensus 82 -~~g--~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 82 -FSG--NPIKVSFATRRAD 97 (116)
Confidence 666 7888888776544
No 211
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.8e-16 Score=121.89 Aligned_cols=82 Identities=16% Similarity=0.391 Sum_probs=72.6
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCC
Q 015716 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (402)
Q Consensus 9 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~ 88 (402)
......++|||+|||.++++++|+++|++||.|.+|+++.+ +|||||+|.+.++|++|++.|++.. +.| +.
T Consensus 20 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~ 90 (109)
T 1x4g_A 20 QSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTT-IEG--HV 90 (109)
T ss_dssp HSCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCE-ETT--EE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCE-ECC--cE
Confidence 35667899999999999999999999999999999999876 5899999999999999999997765 666 88
Q ss_pred ccccccCcccc
Q 015716 89 LQVKYADGELE 99 (402)
Q Consensus 89 ~~~~~~~~~~~ 99 (402)
|.|.++.....
T Consensus 91 l~v~~a~~~~~ 101 (109)
T 1x4g_A 91 VKCYWGKESPD 101 (109)
T ss_dssp CEEECCCCCCS
T ss_pred EEEEecCCCCC
Confidence 88888876543
No 212
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.64 E-value=2.6e-16 Score=114.77 Aligned_cols=73 Identities=19% Similarity=0.262 Sum_probs=66.9
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEEc
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~a 181 (402)
...|||+||++.+|+++|+++|.+||+|.++.+.. ++|||||+|.+.++|.+|++.||+.. +.|+ +|+|++|
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-----~kGfaFVey~~~~eA~~Ai~~Ln~~~-l~gr--~I~V~~A 78 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-----NQGIALCKYTTREEANKAQMALNNCV-LANT--TIFAESP 78 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHTTEE-ETTE--EEEEECC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-----CCcEEEEEECCHHHHHHHHHHhcCCE-ECCc--EEEEEEC
Confidence 46799999999999999999999999999999976 59999999999999999999999987 6665 5999998
Q ss_pred C
Q 015716 182 D 182 (402)
Q Consensus 182 ~ 182 (402)
.
T Consensus 79 ~ 79 (89)
T 2wbr_A 79 S 79 (89)
T ss_dssp C
T ss_pred C
Confidence 3
No 213
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.64 E-value=3.2e-16 Score=124.20 Aligned_cols=81 Identities=21% Similarity=0.392 Sum_probs=72.3
Q ss_pred ccccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEE
Q 015716 99 ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLV 177 (402)
Q Consensus 99 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~ 177 (402)
....++|||+|||.++++++|+++|++||.|.+|++++++ ++.++|||||+|.+.++|++|++.|||.. ++|+ .|+
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g~--~l~ 113 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQ-VGTK--RLK 113 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCE-ETTE--ECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCE-ECCE--EEE
Confidence 3346899999999999999999999999999999999886 78999999999999999999999999987 6665 578
Q ss_pred EEEcC
Q 015716 178 VKWAD 182 (402)
Q Consensus 178 v~~a~ 182 (402)
|.|++
T Consensus 114 V~~ak 118 (118)
T 2khc_A 114 VQLKK 118 (118)
T ss_dssp EEEC-
T ss_pred EEecC
Confidence 87763
No 214
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3.3e-16 Score=122.22 Aligned_cols=82 Identities=24% Similarity=0.461 Sum_probs=73.4
Q ss_pred ccccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEE
Q 015716 99 ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (402)
Q Consensus 99 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v 178 (402)
....++|||+|||.++++++|+++|++||.|.+|+++++.. .++|||||+|.+.++|++|++.|||.. ++|+ .|.|
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-~~kg~afV~f~~~~~A~~Ai~~l~g~~-~~g~--~l~V 101 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-GSKGFGFVTFENSADADRAREKLHGTV-VEGR--KIEV 101 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT-BCTTEEEEECCCSHHHHHHHHHHTTCE-ETTE--ECEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC-CCceEEEEEECCHHHHHHHHHHcCCCE-ECCE--EEEE
Confidence 34478999999999999999999999999999999998864 489999999999999999999999987 6665 6899
Q ss_pred EEcCCH
Q 015716 179 KWADTE 184 (402)
Q Consensus 179 ~~a~~~ 184 (402)
.++.++
T Consensus 102 ~~a~~~ 107 (109)
T 2err_A 102 NNATAR 107 (109)
T ss_dssp EECCCS
T ss_pred EECCCC
Confidence 998764
No 215
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.64 E-value=4.2e-16 Score=116.91 Aligned_cols=79 Identities=22% Similarity=0.395 Sum_probs=72.4
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEE
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~ 180 (402)
.++|||+|||.++++++|+++|++||.|.++.++++. ++.++|||||+|.+.++|++|+ .|||.. ++|+ .|.|.+
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~-~~g~--~l~V~~ 81 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESL-FRGR--QIKVIP 81 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCE-ETTE--ECEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCE-ECCc--EEEEEE
Confidence 5799999999999999999999999999999999986 8899999999999999999999 899987 6665 588988
Q ss_pred cCCH
Q 015716 181 ADTE 184 (402)
Q Consensus 181 a~~~ 184 (402)
+.+.
T Consensus 82 a~~~ 85 (89)
T 3ucg_A 82 KRTN 85 (89)
T ss_dssp TTTT
T ss_pred ccCC
Confidence 8653
No 216
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.7e-16 Score=123.74 Aligned_cols=85 Identities=14% Similarity=0.216 Sum_probs=75.7
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCCe-eEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEE
Q 015716 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTI-KDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (402)
Q Consensus 100 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v-~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v 178 (402)
...++|||+|||+++++++|+++|+.||.| .+|+|+++.+++++|||||+|.+.++|++|++. |+.. ++|+ .|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~-~~gr--~i~v 88 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKK-LNGR--EAFV 88 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEE-ETTE--EEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCc-cCCe--EEEE
Confidence 346899999999999999999999999999 899999999999999999999999999999987 8866 6665 6899
Q ss_pred EEcCCHHHHH
Q 015716 179 KWADTEKERQ 188 (402)
Q Consensus 179 ~~a~~~~~~~ 188 (402)
.++..+..+.
T Consensus 89 ~~a~~~~~~~ 98 (114)
T 2cpy_A 89 HVVTLEDMRE 98 (114)
T ss_dssp EEECHHHHHH
T ss_pred EECCHHHHHH
Confidence 9998765544
No 217
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=3.3e-16 Score=119.80 Aligned_cols=80 Identities=30% Similarity=0.468 Sum_probs=72.4
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCC--C--CcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEE
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQ--Q--TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLV 177 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~--~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~ 177 (402)
.++|||+|||.++++++|+++|++||.|.+|.++++.. | .++|||||+|.+.++|++|++.|||.. ++|+ .|.
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g~--~l~ 81 (98)
T 2cpf_A 5 SSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHT-VDGH--KLE 81 (98)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCE-ETTE--ECE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCe-eCCe--EEE
Confidence 57899999999999999999999999999999998753 3 789999999999999999999999987 6665 689
Q ss_pred EEEcCCH
Q 015716 178 VKWADTE 184 (402)
Q Consensus 178 v~~a~~~ 184 (402)
|.++..+
T Consensus 82 V~~a~~~ 88 (98)
T 2cpf_A 82 VRISERA 88 (98)
T ss_dssp EECSSCS
T ss_pred EEEccCC
Confidence 9998765
No 218
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=4.1e-16 Score=118.72 Aligned_cols=78 Identities=14% Similarity=0.241 Sum_probs=71.3
Q ss_pred cceEEEcCCCCCCcHHHHH----HhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEE
Q 015716 102 EHKLFIGMLPKNVSEAEVS----ALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLV 177 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~----~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~ 177 (402)
.++|||+|||+++++++|+ ++|++||.|.+|+|+++..+ +|||||+|.+.++|++|++.|||.. ++|+ .|.
T Consensus 9 ~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~-~~gr--~l~ 83 (96)
T 2dgx_A 9 GADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYK-IGSK--KIL 83 (96)
T ss_dssp CEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEE-ETTE--EEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCE-ECCe--EEE
Confidence 5789999999999999999 99999999999999998765 8999999999999999999999987 6665 699
Q ss_pred EEEcCCH
Q 015716 178 VKWADTE 184 (402)
Q Consensus 178 v~~a~~~ 184 (402)
|.++.+.
T Consensus 84 V~~a~~~ 90 (96)
T 2dgx_A 84 VSLATGA 90 (96)
T ss_dssp EEECCCS
T ss_pred EEEcCCC
Confidence 9998764
No 219
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.64 E-value=7.2e-16 Score=115.12 Aligned_cols=79 Identities=22% Similarity=0.382 Sum_probs=69.8
Q ss_pred ccccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEE
Q 015716 99 ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLV 177 (402)
Q Consensus 99 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~ 177 (402)
....++|||+|||.++++++|+++|++||.|.++.+++++ ++.++|||||+|.+.++|.+|++. ++.. ++|+ .|.
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~-~~g~--~i~ 83 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHR-LDGR--VID 83 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEE-ETTE--EEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCE-ECCE--EEE
Confidence 3457899999999999999999999999999999999986 699999999999999999999964 6655 7775 578
Q ss_pred EEEc
Q 015716 178 VKWA 181 (402)
Q Consensus 178 v~~a 181 (402)
|++|
T Consensus 84 v~~A 87 (87)
T 3s7r_A 84 PKKA 87 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 8765
No 220
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=4.2e-16 Score=122.26 Aligned_cols=78 Identities=26% Similarity=0.451 Sum_probs=68.7
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCC-cccCCCceeEEE
Q 015716 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK-HKMEGSSVPLVV 178 (402)
Q Consensus 100 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~~g~~~~l~v 178 (402)
...++|||+|||+++++++|+++|++||.|.+|+|+++ +|||||+|++.++|.+|++.|++. ..+.|+ +|.|
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr--~l~V 101 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQ--PIYI 101 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTB--CCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhccCCceECCe--EEEE
Confidence 34689999999999999999999999999999999986 899999999999999999999852 236665 5899
Q ss_pred EEcCCH
Q 015716 179 KWADTE 184 (402)
Q Consensus 179 ~~a~~~ 184 (402)
.++..+
T Consensus 102 ~~a~~k 107 (119)
T 2ad9_A 102 QFSNHK 107 (119)
T ss_dssp EECSSS
T ss_pred EEccCC
Confidence 998765
No 221
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.64 E-value=5e-16 Score=120.82 Aligned_cols=81 Identities=28% Similarity=0.495 Sum_probs=69.9
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 015716 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (402)
Q Consensus 8 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~ 87 (402)
.......++|||+|||.++++++|+++|++||.|.+|+++ +|||||+|.+.++|++|++.|++.. +.| +
T Consensus 25 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~-~~g--~ 93 (108)
T 2jvo_A 25 QEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKS-FAN--Q 93 (108)
T ss_dssp ---CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCE-ETT--E
T ss_pred cCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCE-ECC--e
Confidence 4456788999999999999999999999999999999997 6899999999999999999998776 566 8
Q ss_pred CccccccCcccc
Q 015716 88 PLQVKYADGELE 99 (402)
Q Consensus 88 ~~~~~~~~~~~~ 99 (402)
.|.|.++.....
T Consensus 94 ~l~V~~a~~~~~ 105 (108)
T 2jvo_A 94 PLEVVYSKLPAK 105 (108)
T ss_dssp ECEEESCSCCC-
T ss_pred EEEEEEecCCCC
Confidence 888888876543
No 222
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=2.5e-16 Score=121.20 Aligned_cols=85 Identities=19% Similarity=0.380 Sum_probs=72.8
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 015716 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (402)
Q Consensus 8 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~ 87 (402)
.....+.++|||+|||.++++++|+++|++||.| +++.+ .+++++|||||+|.+.++|++||+.||+.. +.| +
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g--~ 81 (101)
T 2fc9_A 9 STWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKRE-IEG--R 81 (101)
T ss_dssp CCCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEE-ETT--E
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCE-eCC--e
Confidence 3456688999999999999999999999999976 56666 568999999999999999999999997766 566 8
Q ss_pred CccccccCcccc
Q 015716 88 PLQVKYADGELE 99 (402)
Q Consensus 88 ~~~~~~~~~~~~ 99 (402)
.|.|.++.+...
T Consensus 82 ~l~v~~a~~~~~ 93 (101)
T 2fc9_A 82 AIRLELQGPRGS 93 (101)
T ss_dssp EEEEEECSSCCC
T ss_pred EEEEEEcCCCCC
Confidence 888888876543
No 223
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.64 E-value=3e-16 Score=113.71 Aligned_cols=74 Identities=22% Similarity=0.409 Sum_probs=67.5
Q ss_pred eEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEEc
Q 015716 104 KLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181 (402)
Q Consensus 104 ~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~a 181 (402)
+|||+|||.++++++|+++|++||.|.++.+++++ ++.++|||||+|.+.++|++|++ +||.. ++|+ .|.|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~-~~g~--~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHE-INNK--MVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCC-SSSC--CCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCE-ECCE--EEEEEeC
Confidence 58999999999999999999999999999999987 78999999999999999999998 89987 6776 4777764
No 224
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.64 E-value=2e-16 Score=123.05 Aligned_cols=80 Identities=18% Similarity=0.198 Sum_probs=69.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcC-CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCC
Q 015716 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFA-LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (402)
Q Consensus 10 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G-~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~ 88 (402)
.....++|||+|||+++++++|+++|++|| +|..+++.. ++++|||||+|.+.++|++||+.|++.. +.| +.
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~-l~G--r~ 96 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIE-FRG--SV 96 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEE-ETT--EE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCE-ECC--eE
Confidence 456778999999999999999999999999 899998854 3478999999999999999999997766 666 78
Q ss_pred ccccccCc
Q 015716 89 LQVKYADG 96 (402)
Q Consensus 89 ~~~~~~~~ 96 (402)
|.|.++..
T Consensus 97 i~V~~a~~ 104 (111)
T 2jvr_A 97 ITVERDDN 104 (111)
T ss_dssp EEEEESCC
T ss_pred EEEEECCC
Confidence 88887654
No 225
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=4e-16 Score=119.29 Aligned_cols=77 Identities=21% Similarity=0.238 Sum_probs=68.3
Q ss_pred ccceEEEcCCCC-CCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCc-ccCCCceeEEE
Q 015716 101 LEHKLFIGMLPK-NVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKH-KMEGSSVPLVV 178 (402)
Q Consensus 101 ~~~~l~v~nlp~-~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~~g~~~~l~v 178 (402)
..++|||+|||+ ++++++|+++|++||.|.+|.|+++ +|||||+|.+.++|.+|++.||+.. .+.|+ +|.|
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr--~l~V 86 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-----INEAFIEMATTEDAQAAVDYYTTTPALVFGK--PVRV 86 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-----SSCEEEEESSHHHHHHHHHHHHHSCCEETTE--ECEE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHHcCCCceECCc--EEEE
Confidence 467999999999 9999999999999999999999876 6899999999999999999999753 25665 6899
Q ss_pred EEcCCH
Q 015716 179 KWADTE 184 (402)
Q Consensus 179 ~~a~~~ 184 (402)
.++...
T Consensus 87 ~~a~~~ 92 (102)
T 1x4d_A 87 HLSQKY 92 (102)
T ss_dssp EEECCC
T ss_pred EECCCC
Confidence 998754
No 226
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=6.3e-16 Score=122.09 Aligned_cols=83 Identities=22% Similarity=0.349 Sum_probs=74.3
Q ss_pred cccccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeE
Q 015716 98 LERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPL 176 (402)
Q Consensus 98 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l 176 (402)
.+...++|||+|||.++++++|+++|++||.|.+|+|++++ ++.++|||||+|.+.++|++|++.+++ . ++|+ .|
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~-~~g~--~l 88 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-I-IDGR--KA 88 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-E-ETTE--EC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-c-CCCE--EE
Confidence 34457899999999999999999999999999999999986 689999999999999999999999998 4 6665 68
Q ss_pred EEEEcCCH
Q 015716 177 VVKWADTE 184 (402)
Q Consensus 177 ~v~~a~~~ 184 (402)
.|.++..+
T Consensus 89 ~V~~a~~~ 96 (116)
T 2cqd_A 89 NVNLAYLG 96 (116)
T ss_dssp EEEESTTT
T ss_pred EEEEcccC
Confidence 99998654
No 227
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.5e-16 Score=123.62 Aligned_cols=79 Identities=20% Similarity=0.229 Sum_probs=68.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCcc
Q 015716 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (402)
Q Consensus 11 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~ 90 (402)
..+.++|||+|||+++|++||+++|++| .|.+|+|++|+. ++++|||||+|.+.++|++|| .+|+.. +.| +.|.
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~-~~g--r~i~ 86 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRML-MIQ--RYVE 86 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEE-ETT--EEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCe-ECC--eEEE
Confidence 3456799999999999999999999999 899999999986 999999999999999999999 575544 666 6666
Q ss_pred ccccC
Q 015716 91 VKYAD 95 (402)
Q Consensus 91 ~~~~~ 95 (402)
|..+.
T Consensus 87 V~~a~ 91 (109)
T 2dnn_A 87 VSPAT 91 (109)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 65543
No 228
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=6.6e-16 Score=120.31 Aligned_cols=82 Identities=18% Similarity=0.189 Sum_probs=70.0
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCC--
Q 015716 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS-- 86 (402)
Q Consensus 9 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~-- 86 (402)
......++|||+|||+++++++|+++|++||+|.+|+|+.+ |||||+|.+.++|++||+.||+.. +.|..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~-~~g~~~~ 81 (108)
T 1x4c_A 10 PSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTK-FRSHEGE 81 (108)
T ss_dssp CCCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEE-EECTTSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCC-ccCCcCc
Confidence 34567899999999999999999999999999999999887 799999999999999999998766 44422
Q ss_pred -CCccccccCccc
Q 015716 87 -SPLQVKYADGEL 98 (402)
Q Consensus 87 -~~~~~~~~~~~~ 98 (402)
+.|.|.++.+..
T Consensus 82 ~~~i~V~~a~~~~ 94 (108)
T 1x4c_A 82 TAYIRVKVDGPRS 94 (108)
T ss_dssp EEEEEEEESSCCS
T ss_pred ceEEEEEeCCCCC
Confidence 677777776543
No 229
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=3.9e-16 Score=122.92 Aligned_cols=84 Identities=24% Similarity=0.500 Sum_probs=75.0
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEE
Q 015716 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (402)
Q Consensus 100 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v 178 (402)
...++|||+|||.++++++|+++|+.||.|.+|.|+++. ++.++|||||+|.+.++|++|+ .|||.. ++|+ .|.|
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~-~~g~--~l~V 98 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQR-LLGV--PIIV 98 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEE-ETTE--EEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCE-eCCe--EEEE
Confidence 346899999999999999999999999999999999987 5889999999999999999999 999987 6665 6999
Q ss_pred EEcCCHHHH
Q 015716 179 KWADTEKER 187 (402)
Q Consensus 179 ~~a~~~~~~ 187 (402)
.++..+..+
T Consensus 99 ~~a~~~~~~ 107 (114)
T 2cq4_A 99 QASQAEKNR 107 (114)
T ss_dssp EEHHHHHHH
T ss_pred EecCCCccC
Confidence 998766543
No 230
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.63 E-value=2.1e-16 Score=118.30 Aligned_cols=80 Identities=28% Similarity=0.503 Sum_probs=71.3
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCC-CC-cceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEE
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQ-QT-SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~-~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~ 179 (402)
.++|||+|||.++++++|+++|++||.|.++.++.+.. +. ++|||||+|.+.++|++|++.|||.. ++|+ .|.|.
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g~--~l~v~ 80 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQ-IDGQ--EITAT 80 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCE-ETTE--ECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCe-ECCe--EEEEE
Confidence 57899999999999999999999999999999998763 33 79999999999999999999999987 6665 58888
Q ss_pred EcCCH
Q 015716 180 WADTE 184 (402)
Q Consensus 180 ~a~~~ 184 (402)
++.+.
T Consensus 81 ~a~~~ 85 (88)
T 4a8x_A 81 AVLAP 85 (88)
T ss_dssp EECCC
T ss_pred ECCCC
Confidence 88654
No 231
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=5.7e-16 Score=121.74 Aligned_cols=84 Identities=26% Similarity=0.389 Sum_probs=75.1
Q ss_pred ccccceEEEcCCCCCCcHHHHHHhhccCCCee--------EEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCccc
Q 015716 99 ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIK--------DLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKM 169 (402)
Q Consensus 99 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~--------~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 169 (402)
....++|||+|||.++++++|+++|++||.|. .|+|+.++ ++.++|||||+|.+.++|++|++.|||.. +
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~-~ 90 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD-F 90 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE-E
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc-c
Confidence 34478999999999999999999999999999 69999984 79999999999999999999999999987 6
Q ss_pred CCCceeEEEEEcCCHH
Q 015716 170 EGSSVPLVVKWADTEK 185 (402)
Q Consensus 170 ~g~~~~l~v~~a~~~~ 185 (402)
.|+ .|.|.++..+.
T Consensus 91 ~g~--~l~V~~a~~~~ 104 (113)
T 2cpe_A 91 QGS--KLKVSLARKKP 104 (113)
T ss_dssp TTE--ECEEECSSCCC
T ss_pred CCC--EEEEEECCCCC
Confidence 664 68999987653
No 232
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=8.7e-16 Score=115.70 Aligned_cols=79 Identities=22% Similarity=0.306 Sum_probs=72.6
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEE
Q 015716 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (402)
Q Consensus 101 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~ 180 (402)
..++|||+|||+++++++|+++|+.| .|.+|+|+++.+++++|||||+|.+.++|++|++ |||.. ++|+ .|.|.+
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~-~~gr--~i~v~~ 83 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREY-MGGR--YIEVFR 83 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEE-ETTE--EEEEEE
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCce-eCCc--EEEEEE
Confidence 46899999999999999999999999 9999999999889999999999999999999999 99987 6665 688888
Q ss_pred cCCH
Q 015716 181 ADTE 184 (402)
Q Consensus 181 a~~~ 184 (402)
+..+
T Consensus 84 a~~~ 87 (91)
T 2dgw_A 84 EKSG 87 (91)
T ss_dssp ESSC
T ss_pred CCcC
Confidence 8764
No 233
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.63 E-value=8.3e-16 Score=122.92 Aligned_cols=82 Identities=26% Similarity=0.452 Sum_probs=75.1
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEE
Q 015716 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (402)
Q Consensus 100 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~ 179 (402)
...++|||+|||.++++++|+++|++||.|.+|.|+++.++.++|||||+|.+.++|.+|++.|||.. ++|+ .|.|.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~-~~g~--~l~V~ 109 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVP-LDGR--PMDIQ 109 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEE-SSSC--EEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCE-ECCc--EEEEE
Confidence 34679999999999999999999999999999999999889999999999999999999999999987 6765 58999
Q ss_pred EcCCH
Q 015716 180 WADTE 184 (402)
Q Consensus 180 ~a~~~ 184 (402)
++...
T Consensus 110 ~a~~~ 114 (124)
T 2kt5_A 110 LVASQ 114 (124)
T ss_dssp EECCT
T ss_pred EeCCC
Confidence 98764
No 234
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.63 E-value=1.1e-16 Score=129.68 Aligned_cols=119 Identities=16% Similarity=0.126 Sum_probs=70.4
Q ss_pred cEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCccccc---cCcccccccceEEEcCCCCCCcHHHHHHhhccCCCeeEEE
Q 015716 57 GCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKY---ADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133 (402)
Q Consensus 57 g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~~~~---~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~ 133 (402)
|+||.+|.-++.+..++..+... ..+. ...-.. .........++|||+|||+++++++|+++|++|| |.+|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~--~gg~--~~g~~~g~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~ 76 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASM--TGGQ--QMGRGSGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVH 76 (139)
T ss_dssp -----------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEE
T ss_pred CcccccccCccccchhcccchhc--cCCC--CCCCCCCCcccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEE
Confidence 57888888887777776654221 1111 110010 1122334467999999999999999999999999 77999
Q ss_pred EeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEEcCCH
Q 015716 134 ILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 184 (402)
Q Consensus 134 i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~a~~~ 184 (402)
|+++++++++|||||+|.+.++|++|+ .+|+.. ++++ .|.|.++..+
T Consensus 77 i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~-l~gR--~i~V~~a~~~ 123 (139)
T 2hgn_A 77 IEIGPDGRVTGEADVEFATHEEAVAAM-SKDRAN-MQHR--YIELFLNSTT 123 (139)
T ss_dssp CCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCS-SSSC--CCCCEECCCS
T ss_pred EEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCE-ECCE--EEEEEECCCC
Confidence 999989999999999999999999999 789876 7776 4677776654
No 235
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.63 E-value=6.4e-16 Score=122.30 Aligned_cols=81 Identities=16% Similarity=0.168 Sum_probs=73.2
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCC---eeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEE
Q 015716 101 LEHKLFIGMLPKNVSEAEVSALFSIYGT---IKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLV 177 (402)
Q Consensus 101 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~---v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~ 177 (402)
..++|||+|||+++++++|+++|+.||. |.+|+|+++.+++++|||||+|.+.++|++|++ +|+.. ++|+ .|.
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~-~~gr--~i~ 91 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRES-MGHR--YIE 91 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEE-ETTE--EEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCe-ECCe--EEE
Confidence 4688999999999999999999999998 899999999889999999999999999999999 99976 6765 588
Q ss_pred EEEcCCHH
Q 015716 178 VKWADTEK 185 (402)
Q Consensus 178 v~~a~~~~ 185 (402)
|.++..+.
T Consensus 92 V~~a~~~~ 99 (118)
T 2db1_A 92 VFKSHRTE 99 (118)
T ss_dssp EEEECHHH
T ss_pred EEECCHHH
Confidence 88886543
No 236
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.63 E-value=9.9e-16 Score=118.25 Aligned_cols=80 Identities=20% Similarity=0.419 Sum_probs=72.3
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEE
Q 015716 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (402)
Q Consensus 100 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v 178 (402)
...++|||+|||.++++++|+++|++|| |.+|+|+++. ++.++|||||+|.+.++|++|+ .|||.. ++|+ .|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~-~~g~--~l~V 87 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGAL-LGDR--SLRV 87 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCE-ETTE--ECEE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCe-ECCe--EEEE
Confidence 3468999999999999999999999997 9999999987 6899999999999999999999 899987 6665 6899
Q ss_pred EEcCCH
Q 015716 179 KWADTE 184 (402)
Q Consensus 179 ~~a~~~ 184 (402)
.++..+
T Consensus 88 ~~a~~~ 93 (103)
T 2dng_A 88 DIAEGR 93 (103)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 998765
No 237
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.63 E-value=3.7e-16 Score=124.20 Aligned_cols=82 Identities=17% Similarity=0.214 Sum_probs=70.5
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCee--EEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCC
Q 015716 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVD--EVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (402)
Q Consensus 9 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~--~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~ 86 (402)
......++|||+|||+++|+++|+++|++| .|. +|+|++|+. |+++|||||+|.+.++|++||+. ++ ..+.|
T Consensus 37 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~-~~l~g-- 110 (126)
T 2hgm_A 37 ADSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HK-ERIGH-- 110 (126)
T ss_dssp TCSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TT-CCBTT--
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CC-CEECC--
Confidence 345678999999999999999999999999 677 899999987 99999999999999999999986 45 44766
Q ss_pred CCccccccCc
Q 015716 87 SPLQVKYADG 96 (402)
Q Consensus 87 ~~~~~~~~~~ 96 (402)
+.|.|..+..
T Consensus 111 R~I~V~~a~~ 120 (126)
T 2hgm_A 111 RYIEVFKSSQ 120 (126)
T ss_dssp BCCCCEEECH
T ss_pred EEEEEEECCH
Confidence 7777776543
No 238
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=2.6e-16 Score=124.80 Aligned_cols=79 Identities=16% Similarity=0.269 Sum_probs=68.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCe----eEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCC
Q 015716 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALV----DEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (402)
Q Consensus 11 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v----~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~ 86 (402)
..+.++|||+|||+++|+++|+++|++||.| .+|+|+.++ +++++|||||+|.+.++|++||+. |+ ..+.+
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~-~~l~g-- 94 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HK-DLLGK-- 94 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TT-EESSS--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CC-CeeCC--
Confidence 4678999999999999999999999999975 689999995 799999999999999999999986 55 44666
Q ss_pred CCcccccc
Q 015716 87 SPLQVKYA 94 (402)
Q Consensus 87 ~~~~~~~~ 94 (402)
+.|.|..+
T Consensus 95 R~i~V~~a 102 (123)
T 2dha_A 95 RYIELFRS 102 (123)
T ss_dssp CEECCEEE
T ss_pred eEEEEEEC
Confidence 56666544
No 239
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.63 E-value=9.9e-16 Score=130.01 Aligned_cols=85 Identities=22% Similarity=0.366 Sum_probs=76.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCc
Q 015716 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (402)
Q Consensus 10 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~ 89 (402)
.....++|||+|||+++++++|+++|++||+|++|.|+.++ ++.++|||||+|.+.++|++|++.|++.. +.| +.|
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~-l~G--r~l 159 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVP-LDG--RPM 159 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCB-CSS--SBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCE-ECC--EEE
Confidence 34567899999999999999999999999999999999998 79999999999999999999999997765 666 888
Q ss_pred cccccCccc
Q 015716 90 QVKYADGEL 98 (402)
Q Consensus 90 ~~~~~~~~~ 98 (402)
.|.++....
T Consensus 160 ~V~~a~~~~ 168 (177)
T 2f3j_A 160 DIQLVASQI 168 (177)
T ss_dssp EEEEESSGG
T ss_pred EEEEecCCC
Confidence 888876543
No 240
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.63 E-value=3.9e-16 Score=119.81 Aligned_cols=80 Identities=24% Similarity=0.418 Sum_probs=70.7
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC--CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEE
Q 015716 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS--QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLV 177 (402)
Q Consensus 100 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~ 177 (402)
...++|||+|||.++++++|+++|++|| |.+|+|+++. +++++|||||+|.+.++|.+|+ .|||.. ++|+ .|.
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~-~~g~--~l~ 91 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEES-LGNR--RIR 91 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCC-BTTB--CCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCE-ECCe--EEE
Confidence 3478999999999999999999999999 9999999986 7899999999999999999999 899987 6766 478
Q ss_pred EEEcCCH
Q 015716 178 VKWADTE 184 (402)
Q Consensus 178 v~~a~~~ 184 (402)
|.++..+
T Consensus 92 V~~a~~~ 98 (100)
T 2j76_E 92 VDVADQA 98 (100)
T ss_dssp CEECCCS
T ss_pred EEeccCC
Confidence 8888754
No 241
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.63 E-value=2e-16 Score=128.18 Aligned_cols=81 Identities=15% Similarity=0.124 Sum_probs=68.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCc
Q 015716 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (402)
Q Consensus 10 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~ 89 (402)
.....++|||+|||+++|++||+++|++|| |++|+|++|+. ++++|||||+|.+.++|++|| .+++ ..+.+ +.|
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g-~~l~g--R~i 115 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDR-ANMQH--RYI 115 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCS-CSSSS--CCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCC-CEECC--EEE
Confidence 455778999999999999999999999999 77999999986 999999999999999999999 6755 44666 677
Q ss_pred cccccCc
Q 015716 90 QVKYADG 96 (402)
Q Consensus 90 ~~~~~~~ 96 (402)
.|..+..
T Consensus 116 ~V~~a~~ 122 (139)
T 2hgn_A 116 ELFLNST 122 (139)
T ss_dssp CCEECCC
T ss_pred EEEECCC
Confidence 7766554
No 242
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.63 E-value=1e-15 Score=122.84 Aligned_cols=83 Identities=28% Similarity=0.510 Sum_probs=74.8
Q ss_pred ccccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEE
Q 015716 99 ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLV 177 (402)
Q Consensus 99 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~ 177 (402)
....++|||+|||.++++++|+++|++||.|.+|.|+.+. ++.++|||||+|.+.++|.+|++.|||.. ++|+ .|.
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g~--~l~ 95 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQD-LMGQ--PIS 95 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCB-SSSS--BCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCe-eCCe--EEE
Confidence 3346799999999999999999999999999999999986 88999999999999999999999999987 6666 588
Q ss_pred EEEcCCH
Q 015716 178 VKWADTE 184 (402)
Q Consensus 178 v~~a~~~ 184 (402)
|.|+..+
T Consensus 96 v~~a~~~ 102 (126)
T 3ex7_B 96 VDWCFVR 102 (126)
T ss_dssp EEESEES
T ss_pred EEEecCC
Confidence 8888654
No 243
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.63 E-value=2.7e-16 Score=120.05 Aligned_cols=84 Identities=17% Similarity=0.393 Sum_probs=72.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHH----HHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCC
Q 015716 10 SSEERVKLFVGQVPKHMTEAQLL----AMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGA 85 (402)
Q Consensus 10 ~~~~~~~l~V~nLp~~~t~~~L~----~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~ 85 (402)
+..+.++|||+|||.++++++|+ ++|++||.|.+|++.. +++++|||||+|.+.++|++|++.||+.. +.|
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g- 78 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFP-FYD- 78 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCE-ETT-
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCE-ECC-
Confidence 45678999999999999999999 9999999999999874 47788999999999999999999998766 566
Q ss_pred CCCccccccCcccc
Q 015716 86 SSPLQVKYADGELE 99 (402)
Q Consensus 86 ~~~~~~~~~~~~~~ 99 (402)
+.+.+.++.++..
T Consensus 79 -~~l~v~~a~~~~~ 91 (97)
T 1nu4_A 79 -KPMRIQYAKTDSD 91 (97)
T ss_dssp -EECEEEECSSCCT
T ss_pred -cEEEEEEccCCCc
Confidence 8888888876543
No 244
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.63 E-value=7.7e-16 Score=125.75 Aligned_cols=82 Identities=26% Similarity=0.505 Sum_probs=74.7
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEE
Q 015716 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (402)
Q Consensus 101 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~ 179 (402)
..++|||+|||.++++++|+++|+.||.|++|+|++++ ++.++|||||+|.+.++|.+|++.|||.. ++|+ .|.|.
T Consensus 41 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g~--~l~v~ 117 (139)
T 1u6f_A 41 VLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFN-ILNK--RLKVA 117 (139)
T ss_dssp TTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEE-CSSC--EEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCE-ECCe--EEEEE
Confidence 36899999999999999999999999999999999886 68899999999999999999999999987 6665 59999
Q ss_pred EcCCHH
Q 015716 180 WADTEK 185 (402)
Q Consensus 180 ~a~~~~ 185 (402)
++.++.
T Consensus 118 ~a~~~~ 123 (139)
T 1u6f_A 118 LAASGH 123 (139)
T ss_dssp ESSCCC
T ss_pred ECCCCC
Confidence 988653
No 245
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=9.1e-16 Score=118.66 Aligned_cols=81 Identities=23% Similarity=0.422 Sum_probs=72.7
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCC--CCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEE
Q 015716 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQ--QTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLV 177 (402)
Q Consensus 100 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~ 177 (402)
...++|||+|||.++++++|+++|+.|| |.+|.|+++.. +.++|||||+|.+.++|++|+ .||+.. ++|+ .|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~-~~g~--~l~ 87 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEES-LGNK--RIR 87 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCE-ETTE--ECE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCE-eCCc--EEE
Confidence 3468999999999999999999999999 99999999873 899999999999999999999 999987 6665 689
Q ss_pred EEEcCCHH
Q 015716 178 VKWADTEK 185 (402)
Q Consensus 178 v~~a~~~~ 185 (402)
|.++.++.
T Consensus 88 V~~a~~~~ 95 (104)
T 1wi8_A 88 VDVADQAQ 95 (104)
T ss_dssp EEECCCCC
T ss_pred EEEccCCC
Confidence 99987653
No 246
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.2e-15 Score=117.98 Aligned_cols=80 Identities=19% Similarity=0.218 Sum_probs=71.3
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCCeeE-EEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEE
Q 015716 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKD-LQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (402)
Q Consensus 101 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~-~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~ 179 (402)
..++|||+|||+++++++|+++|++||.|.+ |.|+.+.+++++|||||+|.+.++|++|++. |+.. ++|+ .|.|.
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~-~~gr--~i~v~ 89 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKER-IGHR--YIEIF 89 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCC-SSSS--CCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-Ccch-hCCc--EEEEE
Confidence 4689999999999999999999999999987 8898888999999999999999999999997 8876 7776 47777
Q ss_pred EcCCH
Q 015716 180 WADTE 184 (402)
Q Consensus 180 ~a~~~ 184 (402)
++..+
T Consensus 90 ~~~~~ 94 (104)
T 1wg5_A 90 KSSRA 94 (104)
T ss_dssp EECTT
T ss_pred ECCHH
Confidence 77543
No 247
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.62 E-value=5.6e-16 Score=114.03 Aligned_cols=69 Identities=19% Similarity=0.385 Sum_probs=63.4
Q ss_pred cceEEEcCCCCCC------cHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCC
Q 015716 102 EHKLFIGMLPKNV------SEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGS 172 (402)
Q Consensus 102 ~~~l~v~nlp~~~------t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~ 172 (402)
+++|||+|||..+ ++++|+++|++||.|.++.++ ..+|+++|||||+|.+.++|.+|++.|||.. ++|+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~-~~g~ 75 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYK-LDKQ 75 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCC-CSSS
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec-CCCCcEeEEEEEEECCHHHHHHHHHHhcCcc-cCCc
Confidence 3689999999999 789999999999999999988 4578999999999999999999999999988 6666
No 248
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.62 E-value=2.4e-16 Score=127.31 Aligned_cols=83 Identities=16% Similarity=0.355 Sum_probs=74.2
Q ss_pred cccccceEEEcCCCCCCcHHHHHHhhccCCCeeE--EEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCC----cccC
Q 015716 98 LERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKD--LQILRGS-QQTSKGCAFLKYETKEQALAALEAINGK----HKME 170 (402)
Q Consensus 98 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~--~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~----~~~~ 170 (402)
.....++|||+|||+++++++|+++|++||.|.. |+|++|+ +++++|||||+|.+. +|.+|++.|||. . ++
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~-~~ 96 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLT-ID 96 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCC-GG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCcc-CC
Confidence 3445789999999999999999999999999977 9999998 899999999999999 999999999998 6 66
Q ss_pred CCceeEEEEEcCCH
Q 015716 171 GSSVPLVVKWADTE 184 (402)
Q Consensus 171 g~~~~l~v~~a~~~ 184 (402)
|+ .|.|.++.++
T Consensus 97 gr--~l~V~~a~~~ 108 (131)
T 2m2b_A 97 GK--TINVEFAKGS 108 (131)
T ss_dssp GC--CCCCEECCCS
T ss_pred CE--EEEEEECCCC
Confidence 65 5888888764
No 249
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=2.4e-16 Score=124.08 Aligned_cols=67 Identities=22% Similarity=0.462 Sum_probs=62.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC---CCcccEEEEEeCCHHHHHHHHHHhc
Q 015716 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTT---RASRGCCFVICPSRQEADKAVNACH 77 (402)
Q Consensus 10 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t---~~~~g~afV~F~~~~~a~~ai~~l~ 77 (402)
.....++|||+|||+++++++|+++|++||+|. +.++.++.+ |+++|||||+|.+.++|++||+.|+
T Consensus 4 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~ 73 (114)
T 2dnl_A 4 GSSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL 73 (114)
T ss_dssp SSSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE
T ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh
Confidence 456789999999999999999999999999999 888888777 7999999999999999999999984
No 250
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=1.4e-15 Score=117.01 Aligned_cols=78 Identities=15% Similarity=0.232 Sum_probs=68.5
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCc-ccCCCceeEEE
Q 015716 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKH-KMEGSSVPLVV 178 (402)
Q Consensus 100 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~~g~~~~l~v 178 (402)
...++|||+|||+++++++|+++|++||.|.+|.++++ ||||||+|.+.++|.+|++.|++.. .+.|+ +|.|
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr--~l~V 85 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-----KRQALVEFENIDSAKECVTFAADVPVYIAGQ--QAFF 85 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSS--BCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCE--EEEE
Confidence 34689999999999999999999999999999999874 8999999999999999999998653 35665 5899
Q ss_pred EEcCCH
Q 015716 179 KWADTE 184 (402)
Q Consensus 179 ~~a~~~ 184 (402)
.|+..+
T Consensus 86 ~~a~~~ 91 (104)
T 1wex_A 86 NYSTSK 91 (104)
T ss_dssp EECSSS
T ss_pred EEccCc
Confidence 998764
No 251
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=5.8e-16 Score=121.14 Aligned_cols=77 Identities=18% Similarity=0.211 Sum_probs=67.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCcc
Q 015716 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (402)
Q Consensus 11 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~ 90 (402)
....++|||+|||+++++++|+++|++||.|.+|.++. ++|||||+|.+.++|++||+.||+.. +.| +.|.
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~-~~g--~~l~ 77 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSK-FHH--VPLY 77 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCB-SSS--SBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCE-ECC--eEEE
Confidence 44578999999999999999999999999999998864 56799999999999999999998776 566 7888
Q ss_pred ccccCc
Q 015716 91 VKYADG 96 (402)
Q Consensus 91 ~~~~~~ 96 (402)
|.++..
T Consensus 78 V~~a~~ 83 (111)
T 1whx_A 78 LEWAPI 83 (111)
T ss_dssp EEEEET
T ss_pred EEECCC
Confidence 888753
No 252
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.7e-16 Score=116.93 Aligned_cols=77 Identities=17% Similarity=0.298 Sum_probs=68.9
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEE
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~ 180 (402)
.++|||+|||.++++++|+++|++||.|.++.+++++ ++.++|||||+|.+.++|++|++.|||.. ++|+ .|++.+
T Consensus 5 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g~--~~~~~~ 81 (85)
T 1x4e_A 5 SSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASG-VQAQ--MAKQSG 81 (85)
T ss_dssp CCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHT-CCEE--SCCSSC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCe-EeeE--EEeecC
Confidence 6799999999999999999999999999999999986 78999999999999999999999999987 6665 355544
Q ss_pred c
Q 015716 181 A 181 (402)
Q Consensus 181 a 181 (402)
+
T Consensus 82 ~ 82 (85)
T 1x4e_A 82 P 82 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 253
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=4.6e-16 Score=121.83 Aligned_cols=80 Identities=24% Similarity=0.432 Sum_probs=72.0
Q ss_pred cceEEEcCCCCCCcHHHHH---HhhccCCCeeEEEEeeCCC----CCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCce
Q 015716 102 EHKLFIGMLPKNVSEAEVS---ALFSIYGTIKDLQILRGSQ----QTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 174 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~---~~f~~~G~v~~~~i~~~~~----~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~ 174 (402)
.++|||+|||+++++++|+ ++|++||.|.+|.|+++.. +.++|||||+|.+.++|++|++.|||.. ++|+
T Consensus 15 ~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~-~~gr-- 91 (111)
T 2cpi_A 15 KNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV-VDGR-- 91 (111)
T ss_dssp SSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEE-ETTE--
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCE-ECCE--
Confidence 5789999999999999999 9999999999999998762 3567999999999999999999999987 6665
Q ss_pred eEEEEEcCCH
Q 015716 175 PLVVKWADTE 184 (402)
Q Consensus 175 ~l~v~~a~~~ 184 (402)
.|.|.++.++
T Consensus 92 ~l~V~~a~~k 101 (111)
T 2cpi_A 92 TLKASLGTTK 101 (111)
T ss_dssp EEEEESCCCC
T ss_pred EEEEEecccc
Confidence 6999998865
No 254
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.1e-15 Score=114.81 Aligned_cols=81 Identities=25% Similarity=0.373 Sum_probs=70.8
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 015716 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (402)
Q Consensus 8 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~ 87 (402)
+......++|||+|||.++++++|+++|++||.|.+|++++ +||||+|.+.++|++|++.||+.. +.| +
T Consensus 3 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~-~~g--~ 71 (90)
T 2dnp_A 3 SGSSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKE-VKG--K 71 (90)
T ss_dssp CCSSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCE-ETT--E
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCE-ECC--c
Confidence 34567889999999999999999999999999999999973 399999999999999999998766 666 8
Q ss_pred CccccccCcccc
Q 015716 88 PLQVKYADGELE 99 (402)
Q Consensus 88 ~~~~~~~~~~~~ 99 (402)
.|.+.++.+...
T Consensus 72 ~l~v~~a~~~~~ 83 (90)
T 2dnp_A 72 RINVELSTKGQK 83 (90)
T ss_dssp ECEEEESCCCCC
T ss_pred EEEEEECCCCCC
Confidence 888888876543
No 255
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.62 E-value=4.8e-16 Score=118.15 Aligned_cols=79 Identities=19% Similarity=0.274 Sum_probs=70.2
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEE
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~ 180 (402)
.++|||+|||+++++++|+++|++||.|..+.++.+. ++.++|||||+|.+.++|++|++.|||.. ++|+ .|.|.+
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~-~~gr--~l~v~~ 91 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRP-IGSR--KVKLSG 91 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCE-ETTE--ECEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCe-ECCc--EEEEEe
Confidence 5799999999999999999999999999988887765 78899999999999999999999999987 6665 588887
Q ss_pred cCC
Q 015716 181 ADT 183 (402)
Q Consensus 181 a~~ 183 (402)
+.+
T Consensus 92 a~s 94 (95)
T 2ek1_A 92 PSS 94 (95)
T ss_dssp CC-
T ss_pred ccC
Confidence 653
No 256
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.62 E-value=1.2e-15 Score=116.04 Aligned_cols=78 Identities=17% Similarity=0.366 Sum_probs=66.4
Q ss_pred cCCCCCCeEEEcCCCC-CCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 015716 9 KSSEERVKLFVGQVPK-HMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (402)
Q Consensus 9 ~~~~~~~~l~V~nLp~-~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~ 87 (402)
.+..+.++|||+|||+ ++++++|+++|++||.|.+|++. +|||||+|.+.++|++|++.||+.. +.| +
T Consensus 5 ~~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~-~~g--~ 73 (96)
T 2kvi_A 5 HNIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEM-NFG--K 73 (96)
T ss_dssp ----CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSS-CBT--T
T ss_pred ccCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCe-eCC--c
Confidence 3456889999999998 99999999999999999999984 6899999999999999999997766 556 7
Q ss_pred CccccccCcc
Q 015716 88 PLQVKYADGE 97 (402)
Q Consensus 88 ~~~~~~~~~~ 97 (402)
.|.|.++...
T Consensus 74 ~l~V~~a~~~ 83 (96)
T 2kvi_A 74 KLILEVSSSN 83 (96)
T ss_dssp TBCEEEEECC
T ss_pred EEEEEEcCcC
Confidence 8888877544
No 257
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.62 E-value=1.4e-15 Score=121.49 Aligned_cols=84 Identities=27% Similarity=0.438 Sum_probs=73.1
Q ss_pred ccceEEEcCCCCCCcHHHHH----HhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeE
Q 015716 101 LEHKLFIGMLPKNVSEAEVS----ALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPL 176 (402)
Q Consensus 101 ~~~~l~v~nlp~~~t~~~l~----~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l 176 (402)
..++|||+|||+.+++++|+ ++|++||.|.+|.+.+ +++++|||||+|.+.++|.+|++.|||.. +.|+ .|
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~--~~~~rG~aFV~F~~~~~A~~Ai~~lng~~-l~gr--~l 102 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL--SDDNSGKAYIVFATQESAQAFVEAFQGYP-FQGN--PL 102 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC--CCSSCCCEEEEESSHHHHHHHHHHSTTCC-CTTS--CC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc--CCCcCCEEEEEECCHHHHHHHHHHHCCCE-eCCC--EE
Confidence 36799999999999999876 6999999999988864 57889999999999999999999999987 6665 58
Q ss_pred EEEEcCCHHHHHH
Q 015716 177 VVKWADTEKERQA 189 (402)
Q Consensus 177 ~v~~a~~~~~~~~ 189 (402)
.|.|+..+.....
T Consensus 103 ~V~~a~~~~~~~~ 115 (127)
T 2a3j_A 103 VITFSETPQSQVA 115 (127)
T ss_dssp EEEECCCCCHHHH
T ss_pred EEEEccCcchhcc
Confidence 9999988765543
No 258
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=9.3e-16 Score=117.97 Aligned_cols=78 Identities=22% Similarity=0.266 Sum_probs=68.9
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEE
Q 015716 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (402)
Q Consensus 101 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~ 180 (402)
..++|||+|||+++++++|+++|++|| +.+|+|+++++++++|||||+|.+.++|++|++ +|+.. ++++ .|.|.+
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~-~~gr--~i~V~~ 88 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKAN-MQHR--YVELFL 88 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCC-SSSS--CCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCe-ECCc--EEEEEE
Confidence 367999999999999999999999999 459999999999999999999999999999995 78876 7776 467776
Q ss_pred cCC
Q 015716 181 ADT 183 (402)
Q Consensus 181 a~~ 183 (402)
+..
T Consensus 89 ~~~ 91 (102)
T 1wez_A 89 NST 91 (102)
T ss_dssp ECC
T ss_pred CCC
Confidence 654
No 259
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.4e-15 Score=116.36 Aligned_cols=77 Identities=29% Similarity=0.508 Sum_probs=67.6
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHc--CCcccCCCceeEE
Q 015716 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAIN--GKHKMEGSSVPLV 177 (402)
Q Consensus 100 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~--g~~~~~g~~~~l~ 177 (402)
...++|||+|||+++++++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|++.|+ +.. +.|+ +|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~-~~Gr--~l~ 84 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-----KNQAFLELATEEAAITMVNYYSAVTPH-LRNQ--PIY 84 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCE-ETTE--ECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCce-ECCc--EEE
Confidence 34679999999999999999999999999999999875 8999999999999999999886 433 5664 689
Q ss_pred EEEcCCH
Q 015716 178 VKWADTE 184 (402)
Q Consensus 178 v~~a~~~ 184 (402)
|.|+..+
T Consensus 85 V~~a~~~ 91 (101)
T 2cq1_A 85 IQYSNHK 91 (101)
T ss_dssp EEECSCS
T ss_pred EEEcCcc
Confidence 9999764
No 260
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.5e-15 Score=117.95 Aligned_cols=78 Identities=17% Similarity=0.226 Sum_probs=70.6
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEEc
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~a 181 (402)
..+|||+|||+++++++|+++|+.| .|.+|+|+++++|+++|||||+|.+.++|++|+ .+|+.. ++|+ .|.|..+
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~-~~gr--~i~V~~a 90 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRML-MIQR--YVEVSPA 90 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEE-ETTE--EEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCe-ECCe--EEEEEEC
Confidence 5789999999999999999999999 899999999989999999999999999999999 689876 7775 5888877
Q ss_pred CCH
Q 015716 182 DTE 184 (402)
Q Consensus 182 ~~~ 184 (402)
..+
T Consensus 91 ~~~ 93 (109)
T 2dnn_A 91 TER 93 (109)
T ss_dssp CHH
T ss_pred Ccc
Confidence 643
No 261
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=4.5e-16 Score=113.32 Aligned_cols=75 Identities=20% Similarity=0.400 Sum_probs=68.2
Q ss_pred ceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEEc
Q 015716 103 HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181 (402)
Q Consensus 103 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~a 181 (402)
++|||+|||.++++++|+++|++||.|.++.+++++ ++.++|||||+|.+.++|.+|++.++ .. ++|+ .|.|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~-~~g~--~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HE-LDSK--TIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CC-CSSC--CCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-Cc-cCCE--EEEEEec
Confidence 479999999999999999999999999999999986 68999999999999999999999998 54 7776 4777776
No 262
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=4.5e-16 Score=119.04 Aligned_cols=81 Identities=19% Similarity=0.242 Sum_probs=71.6
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEE
Q 015716 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (402)
Q Consensus 101 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~ 179 (402)
..++|||+|||.++++++|+++|++||.|..+.++.+. +++++|||||+|.+.++|++|++.|||.. ++|+ .|.|.
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~-~~g~--~l~V~ 90 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRP-IGSR--KVKLV 90 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCE-ETTE--ECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCe-eCCe--EEEEE
Confidence 36789999999999999999999999999887777654 78999999999999999999999999987 6665 58888
Q ss_pred EcCCH
Q 015716 180 WADTE 184 (402)
Q Consensus 180 ~a~~~ 184 (402)
++..+
T Consensus 91 ~a~~~ 95 (98)
T 2cqp_A 91 LGSGP 95 (98)
T ss_dssp ESSCS
T ss_pred EcCCC
Confidence 87653
No 263
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.62 E-value=1e-15 Score=118.58 Aligned_cols=80 Identities=18% Similarity=0.341 Sum_probs=71.4
Q ss_pred ccceEEEcCCCCCC------cHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCce
Q 015716 101 LEHKLFIGMLPKNV------SEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 174 (402)
Q Consensus 101 ~~~~l~v~nlp~~~------t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~ 174 (402)
..++|||+|||+.+ ++++|+++|++||.|.+|.++ ..+|.++|||||+|.+.++|.+|++.|||.. ++|+ .
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~-~~g~-~ 90 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYK-LDKQ-H 90 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSEE-CSTT-C
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCcc-cCCC-c
Confidence 36899999999999 889999999999999999998 4578999999999999999999999999987 6665 1
Q ss_pred eEEEEEcCC
Q 015716 175 PLVVKWADT 183 (402)
Q Consensus 175 ~l~v~~a~~ 183 (402)
.|.|.++..
T Consensus 91 ~l~V~~a~~ 99 (105)
T 2nlw_A 91 TFRVNLFTD 99 (105)
T ss_dssp EEEEECSCC
T ss_pred eEEEEEcch
Confidence 588988864
No 264
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.61 E-value=2.4e-16 Score=118.54 Aligned_cols=80 Identities=19% Similarity=0.440 Sum_probs=69.7
Q ss_pred ceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEEc
Q 015716 103 HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181 (402)
Q Consensus 103 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~a 181 (402)
++|||+|||.++++++|+++|++||.|.++.++++. ++.++|||||+|.+.+ |.+|++.|||.. ++|+ .|.|.+|
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~-~~g~--~l~V~~a 77 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTD-FMGR--TIRVTEA 77 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSC-CSSS--SCSEEEC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCE-ECCe--EEEEEEc
Confidence 589999999999999999999999999999999987 6899999999999999 999999999987 6766 5888888
Q ss_pred CCHHH
Q 015716 182 DTEKE 186 (402)
Q Consensus 182 ~~~~~ 186 (402)
..+..
T Consensus 78 ~~~~~ 82 (90)
T 2ki2_A 78 NPKKS 82 (90)
T ss_dssp -----
T ss_pred CCCCC
Confidence 77543
No 265
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=4.5e-16 Score=120.75 Aligned_cols=82 Identities=20% Similarity=0.295 Sum_probs=66.2
Q ss_pred ccCCCCCCeEEE--cCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCC--CC
Q 015716 8 KKSSEERVKLFV--GQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKT--LP 83 (402)
Q Consensus 8 ~~~~~~~~~l~V--~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~--~~ 83 (402)
+....+.++||| +||++++++++|+++|++||.|.+|.|+. .+|||||+|.+.++|++|++.||+..+ ..
T Consensus 19 ~~~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~l 92 (114)
T 2cq2_A 19 ETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDL 92 (114)
T ss_dssp CCCSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTT
T ss_pred cCCCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEcccc
Confidence 445667889999 77999999999999999999999998754 368999999999999999999988754 12
Q ss_pred CCCCCccccccC
Q 015716 84 GASSPLQVKYAD 95 (402)
Q Consensus 84 g~~~~~~~~~~~ 95 (402)
+..+++.+.++.
T Consensus 93 g~g~~l~v~~a~ 104 (114)
T 2cq2_A 93 GQKITLYLNFVE 104 (114)
T ss_dssp SCEEECEEEEES
T ss_pred CCCcEEEEEecc
Confidence 223566655543
No 266
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.61 E-value=1.8e-15 Score=125.28 Aligned_cols=82 Identities=22% Similarity=0.389 Sum_probs=72.5
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 015716 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (402)
Q Consensus 8 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~ 87 (402)
.......++|||+|||+++++++|+++|++||.|.+|+++++ ++|||||+|.+.++|++|++.||+.. +.| +
T Consensus 67 ~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~ 138 (150)
T 2i2y_A 67 RDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRT-LCG--C 138 (150)
T ss_dssp SSSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSC-SSS--S
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCE-ECC--e
Confidence 344567899999999999999999999999999999999876 57899999999999999999998766 666 8
Q ss_pred CccccccCcc
Q 015716 88 PLQVKYADGE 97 (402)
Q Consensus 88 ~~~~~~~~~~ 97 (402)
.|.+.++.++
T Consensus 139 ~l~v~~a~~~ 148 (150)
T 2i2y_A 139 RVRVELSNGE 148 (150)
T ss_dssp CCEEEECCCC
T ss_pred EEEEEEcCCC
Confidence 8888887654
No 267
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2e-15 Score=115.65 Aligned_cols=85 Identities=26% Similarity=0.349 Sum_probs=72.2
Q ss_pred ccccccCCCCCCeEEEcCCCCCCCHHHHHHHHHhc--CCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCC
Q 015716 4 SKKEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEF--ALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKT 81 (402)
Q Consensus 4 ~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~--G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~ 81 (402)
...........++|||+|||+++++++|+++|++| |.|.+|++. +|||||+|.+.++|++|++.||+..
T Consensus 5 ~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~- 75 (99)
T 2cpd_A 5 SSGDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKV- 75 (99)
T ss_dssp CCCCCSCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEE-
T ss_pred ccccccccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCE-
Confidence 34445566788999999999999999999999999 999998764 5799999999999999999997776
Q ss_pred CCCCCCCccccccCcccc
Q 015716 82 LPGASSPLQVKYADGELE 99 (402)
Q Consensus 82 ~~g~~~~~~~~~~~~~~~ 99 (402)
+.| +.|.+.++.+...
T Consensus 76 ~~g--~~l~v~~a~~~~~ 91 (99)
T 2cpd_A 76 LDG--SPIEVTLAKPVDK 91 (99)
T ss_dssp ETT--EEEEEECCCCCCC
T ss_pred eCC--cEEEEEECCCCCC
Confidence 666 8888888876543
No 268
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.1e-15 Score=117.71 Aligned_cols=80 Identities=21% Similarity=0.483 Sum_probs=71.3
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEE
Q 015716 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (402)
Q Consensus 100 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~ 179 (402)
...++|||+|||.++++++|+++|++||.|..|.|..+ +.++|||||+|.+.++|++|++.||+.. ++|+ .|.|.
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g~--~l~V~ 94 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR--RGGPPFAFVEFEDPRDAEDAVYGRDGYD-YDGY--RLRVE 94 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS--SSSSCCEEEEESCHHHHHHHHHHHTTCE-ETTE--ECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC--CCCCcEEEEEECCHHHHHHHHHHcCCCE-ECCe--EEEEE
Confidence 34689999999999999999999999999999999764 5579999999999999999999999987 6665 68999
Q ss_pred EcCCH
Q 015716 180 WADTE 184 (402)
Q Consensus 180 ~a~~~ 184 (402)
++..+
T Consensus 95 ~a~~~ 99 (109)
T 1x4a_A 95 FPRSG 99 (109)
T ss_dssp CCCCC
T ss_pred EcccC
Confidence 98764
No 269
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.61 E-value=1.9e-15 Score=115.16 Aligned_cols=78 Identities=18% Similarity=0.376 Sum_probs=67.2
Q ss_pred ccCCCCCCeEEEcCCCC-CCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCC
Q 015716 8 KKSSEERVKLFVGQVPK-HMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (402)
Q Consensus 8 ~~~~~~~~~l~V~nLp~-~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~ 86 (402)
....++.++|||+|||. ++++++|+++|++||.|.+|++. +|||||+|.+.++|++|++.||+.. +.|
T Consensus 16 ~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~-~~g-- 84 (97)
T 2xnq_A 16 PRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEM-NFG-- 84 (97)
T ss_dssp ---CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSE-ETT--
T ss_pred cCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCE-ECC--
Confidence 34566889999999998 99999999999999999999983 6899999999999999999997765 566
Q ss_pred CCccccccCc
Q 015716 87 SPLQVKYADG 96 (402)
Q Consensus 87 ~~~~~~~~~~ 96 (402)
+.+.+.++..
T Consensus 85 ~~l~V~~a~~ 94 (97)
T 2xnq_A 85 KKLILEVSSS 94 (97)
T ss_dssp EECEEEECCC
T ss_pred EEEEEEecCC
Confidence 7888887754
No 270
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.61 E-value=2.3e-16 Score=121.66 Aligned_cols=80 Identities=28% Similarity=0.400 Sum_probs=69.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCc
Q 015716 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (402)
Q Consensus 10 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~ 89 (402)
.....++|||+|||.++++++|+++|++||.|.+|+++.++ +++++|||||+|.+.++|++|++ ++.. +.| +.+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~-~~g--~~l 78 (102)
T 2xs2_A 5 GKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQIN-FHG--KKL 78 (102)
T ss_dssp CEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCE-ETT--EEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCe-ECC--EEE
Confidence 34567899999999999999999999999999999999998 89999999999999999999998 3433 555 666
Q ss_pred cccccC
Q 015716 90 QVKYAD 95 (402)
Q Consensus 90 ~~~~~~ 95 (402)
.+.++.
T Consensus 79 ~v~~a~ 84 (102)
T 2xs2_A 79 KLGPAI 84 (102)
T ss_dssp EEEEEE
T ss_pred EEEECC
Confidence 665554
No 271
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.61 E-value=1.2e-15 Score=118.90 Aligned_cols=83 Identities=19% Similarity=0.366 Sum_probs=70.9
Q ss_pred ccccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEE
Q 015716 99 ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLV 177 (402)
Q Consensus 99 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~ 177 (402)
....++|||+|||.++++++|+++|++||.|.+|+++++. ++.++|||||+|.+.++|.+|++.++ ..++|+ .|.
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~--~~l~g~--~l~ 97 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR--HELDSK--TID 97 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC--EEETTE--EEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC--CcCCCE--EEE
Confidence 3447899999999999999999999999999999999987 69999999999999999999999764 347775 588
Q ss_pred EEEcCCHH
Q 015716 178 VKWADTEK 185 (402)
Q Consensus 178 v~~a~~~~ 185 (402)
|.++.++.
T Consensus 98 V~~a~~~~ 105 (109)
T 2rs2_A 98 PKVAFPRR 105 (109)
T ss_dssp EEECCCCC
T ss_pred EEEccCCC
Confidence 88887653
No 272
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.61 E-value=5e-16 Score=120.90 Aligned_cols=78 Identities=13% Similarity=0.188 Sum_probs=66.8
Q ss_pred CeEEEcCC----CCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCC----HHH----HHHHHH--HhcCCC
Q 015716 15 VKLFVGQV----PKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPS----RQE----ADKAVN--ACHNKK 80 (402)
Q Consensus 15 ~~l~V~nL----p~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~----~~~----a~~ai~--~l~~~~ 80 (402)
++|||+|| |+.+++++|+++|++||+|.+|+++.|+.||+++|||||+|.+ +++ |.+|++ .|++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 78999999 9999999999999999999999999999999999999999996 433 788888 565555
Q ss_pred CCCCCCCCccccccC
Q 015716 81 TLPGASSPLQVKYAD 95 (402)
Q Consensus 81 ~~~g~~~~~~~~~~~ 95 (402)
+.| +.++|.+.+
T Consensus 83 -I~G--r~irV~ln~ 94 (136)
T 2j8a_A 83 -IMG--FKFEVILNK 94 (136)
T ss_dssp -ETT--EEEEEEECC
T ss_pred -ecC--cEEEEEECc
Confidence 666 777777654
No 273
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.4e-15 Score=114.81 Aligned_cols=81 Identities=27% Similarity=0.433 Sum_probs=70.6
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 015716 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (402)
Q Consensus 8 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~ 87 (402)
.......++|||+|||.++++++|+++|++||.|.+|++++ +||||+|.+.++|++|++.||+.. +.| +
T Consensus 4 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~-~~g--~ 72 (92)
T 2dgt_A 4 GSSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTE-FQG--K 72 (92)
T ss_dssp SCCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEE-ETT--E
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCe-eCC--c
Confidence 34566789999999999999999999999999999999973 399999999999999999997776 666 8
Q ss_pred CccccccCcccc
Q 015716 88 PLQVKYADGELE 99 (402)
Q Consensus 88 ~~~~~~~~~~~~ 99 (402)
.|.+.++.++..
T Consensus 73 ~l~V~~a~~~~~ 84 (92)
T 2dgt_A 73 RMHVQLSTSRLR 84 (92)
T ss_dssp EEEEEESSCCCS
T ss_pred EEEEEEccCCCC
Confidence 888888876543
No 274
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=2.2e-15 Score=114.91 Aligned_cols=78 Identities=27% Similarity=0.479 Sum_probs=69.1
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEE
Q 015716 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (402)
Q Consensus 101 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~ 180 (402)
..++|||+|||.++++++|+++|++||.|.+|.+.++ +|||||+|.+.++|++|++.|||.. +++..+.|.|.|
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~-~~~~g~~l~V~~ 89 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-----DSFAYIQYESLDAAQAACAKMRGFP-LGGPDRRLRVDF 89 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-----SCCEEEEESSHHHHHHHHHHHTTCB-CSSSSCBCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-----CCEEEEEECCHHHHHHHHHHHCCCE-eCCCCcEEEEEE
Confidence 3579999999999999999999999999999999865 7899999999999999999999987 562224689999
Q ss_pred cCCH
Q 015716 181 ADTE 184 (402)
Q Consensus 181 a~~~ 184 (402)
+.++
T Consensus 90 a~~~ 93 (97)
T 1why_A 90 AKSG 93 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8765
No 275
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.61 E-value=8.2e-16 Score=119.53 Aligned_cols=82 Identities=18% Similarity=0.150 Sum_probs=73.4
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCC---eeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeE
Q 015716 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGT---IKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPL 176 (402)
Q Consensus 100 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~---v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l 176 (402)
...++|||+|||+++++++|+++|+.||. |.+|.|+++..|+++|||||+|.+.++|++|++ +|+.. ++|+ .|
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~-~~gr--~i 84 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMY-MGQR--YV 84 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCC-SSSS--CC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcce-eCCe--EE
Confidence 34689999999999999999999999998 899999999889999999999999999999999 99976 7776 47
Q ss_pred EEEEcCCHH
Q 015716 177 VVKWADTEK 185 (402)
Q Consensus 177 ~v~~a~~~~ 185 (402)
.|.++..+.
T Consensus 85 ~V~~a~~~~ 93 (107)
T 2lmi_A 85 EVYEINNED 93 (107)
T ss_dssp CCEECCHHH
T ss_pred EEEECCHHH
Confidence 888887543
No 276
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.61 E-value=3e-16 Score=119.51 Aligned_cols=84 Identities=17% Similarity=0.286 Sum_probs=71.4
Q ss_pred cccCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCC
Q 015716 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (402)
Q Consensus 7 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~ 86 (402)
......+.++|||+|||.++++++|+++|++||.|..+ ..+++++|||||+|.+.++|++|++.|++.. +.|
T Consensus 9 ~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g-- 80 (96)
T 1fjc_A 9 TSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAE-IDG-- 80 (96)
T ss_dssp TTSTTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEE-ETT--
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCE-ECC--
Confidence 34456678999999999999999999999999988766 3358899999999999999999999997765 666
Q ss_pred CCccccccCccc
Q 015716 87 SPLQVKYADGEL 98 (402)
Q Consensus 87 ~~~~~~~~~~~~ 98 (402)
+.|.+.++.++.
T Consensus 81 ~~l~v~~a~~~~ 92 (96)
T 1fjc_A 81 RSVSLYYTGEKG 92 (96)
T ss_dssp EEEEEEECSSSC
T ss_pred eEEEEEEcCCCC
Confidence 788888876543
No 277
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=2.1e-15 Score=117.46 Aligned_cols=78 Identities=17% Similarity=0.258 Sum_probs=69.8
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCc---eeE
Q 015716 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSS---VPL 176 (402)
Q Consensus 100 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~---~~l 176 (402)
...++|||+|||+++++++|+++|++||.|..|.|+++ |||||+|.+.++|++|++.|||.. +.|.. +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~-~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTK-FRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT------TEEEEEESSHHHHHHHHHHSSSEE-EECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC------CEEEEEECCHHHHHHHHHHHCcCC-ccCCcCcceEE
Confidence 44789999999999999999999999999999999876 899999999999999999999987 55522 579
Q ss_pred EEEEcCCH
Q 015716 177 VVKWADTE 184 (402)
Q Consensus 177 ~v~~a~~~ 184 (402)
.|.++.++
T Consensus 86 ~V~~a~~~ 93 (108)
T 1x4c_A 86 RVKVDGPR 93 (108)
T ss_dssp EEEESSCC
T ss_pred EEEeCCCC
Confidence 99999874
No 278
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=1.9e-15 Score=116.16 Aligned_cols=80 Identities=21% Similarity=0.354 Sum_probs=70.7
Q ss_pred ccccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEE
Q 015716 99 ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (402)
Q Consensus 99 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v 178 (402)
....++|||+|||.++++++|+++|++||.| +++++.++.++|||||+|.+.++|++|++.|||.. +.|+ .|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g~--~l~v 85 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKRE-IEGR--AIRL 85 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEE-ETTE--EEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCE-eCCe--EEEE
Confidence 3447899999999999999999999999977 66777788999999999999999999999999977 6654 6999
Q ss_pred EEcCCH
Q 015716 179 KWADTE 184 (402)
Q Consensus 179 ~~a~~~ 184 (402)
.++.++
T Consensus 86 ~~a~~~ 91 (101)
T 2fc9_A 86 ELQGPR 91 (101)
T ss_dssp EECSSC
T ss_pred EEcCCC
Confidence 998765
No 279
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.60 E-value=3e-15 Score=124.72 Aligned_cols=81 Identities=25% Similarity=0.423 Sum_probs=74.3
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEE
Q 015716 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (402)
Q Consensus 101 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~ 179 (402)
..++|||+|||.++++++|+++|++||.|.+|.|+++. ++.++|||||+|.+.++|++|++.||+.. ++|+ .|.|.
T Consensus 38 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~-~~g~--~l~V~ 114 (156)
T 1h2v_Z 38 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTR-LDDR--IIRTD 114 (156)
T ss_dssp TCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSE-ETTE--ECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCE-ECCe--EEEEE
Confidence 46899999999999999999999999999999999987 68899999999999999999999999987 6664 68999
Q ss_pred EcCCH
Q 015716 180 WADTE 184 (402)
Q Consensus 180 ~a~~~ 184 (402)
|+.+.
T Consensus 115 ~a~~~ 119 (156)
T 1h2v_Z 115 WDAGF 119 (156)
T ss_dssp EESCC
T ss_pred ECCCC
Confidence 99764
No 280
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=7.9e-16 Score=119.23 Aligned_cols=82 Identities=22% Similarity=0.367 Sum_probs=73.6
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEE
Q 015716 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (402)
Q Consensus 100 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v 178 (402)
...++|||+|||.++++++|+++|++||.|.+|.|++++ ++.++|||||+|.+.++|++|++. ++.. ++|+ .|.|
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~-~~g~--~l~V 89 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHT-LDGR--NIDP 89 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEE-ETTE--EEBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCe-ECCE--EEEE
Confidence 346899999999999999999999999999999999986 789999999999999999999998 8876 6665 5888
Q ss_pred EEcCCHH
Q 015716 179 KWADTEK 185 (402)
Q Consensus 179 ~~a~~~~ 185 (402)
.++.++.
T Consensus 90 ~~a~~~~ 96 (105)
T 2dh8_A 90 KPCTPRG 96 (105)
T ss_dssp CCSCCSS
T ss_pred EEccCCC
Confidence 8887653
No 281
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.60 E-value=1.5e-15 Score=117.15 Aligned_cols=79 Identities=23% Similarity=0.366 Sum_probs=69.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCc
Q 015716 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (402)
Q Consensus 10 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~ 89 (402)
...+.++|||+|||+++++++|+++|++||.|.+|+++ +|||||+|.+.++|++|++.||+.. +.| +.|
T Consensus 7 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l 75 (103)
T 2dgu_A 7 GMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKD-LEG--ENI 75 (103)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEE-ETT--EEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCc-cCC--CEE
Confidence 44577999999999999999999999999999999986 3599999999999999999998776 666 788
Q ss_pred cccccCcccc
Q 015716 90 QVKYADGELE 99 (402)
Q Consensus 90 ~~~~~~~~~~ 99 (402)
.+.++.+...
T Consensus 76 ~v~~a~~~~~ 85 (103)
T 2dgu_A 76 EIVFAKPPDQ 85 (103)
T ss_dssp EEEECCCCCC
T ss_pred EEEEcCCCcc
Confidence 8888765543
No 282
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=2.4e-15 Score=114.43 Aligned_cols=83 Identities=20% Similarity=0.315 Sum_probs=71.2
Q ss_pred ccCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEE-EeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCC
Q 015716 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVN-IIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (402)
Q Consensus 8 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~-~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~ 86 (402)
.......++|||+|||+++++++|+++|++||.|.+|+ ++.++.++ .|||+|.+.++|++|++.||+.. +.|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~-~~g-- 81 (96)
T 2e44_A 9 VPKRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQ-LEN-- 81 (96)
T ss_dssp CCCCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCB-CSS--
T ss_pred CCCCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCE-ECC--
Confidence 34455689999999999999999999999999999994 88876543 39999999999999999998776 566
Q ss_pred CCccccccCcc
Q 015716 87 SPLQVKYADGE 97 (402)
Q Consensus 87 ~~~~~~~~~~~ 97 (402)
+.|.+.++.++
T Consensus 82 ~~l~V~~a~~~ 92 (96)
T 2e44_A 82 FTLKVAYIPDE 92 (96)
T ss_dssp CBCEEEECCCC
T ss_pred cEEEEEEcCcc
Confidence 88888888765
No 283
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.60 E-value=1.2e-15 Score=118.62 Aligned_cols=79 Identities=19% Similarity=0.228 Sum_probs=69.1
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCC-CeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEE
Q 015716 101 LEHKLFIGMLPKNVSEAEVSALFSIYG-TIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (402)
Q Consensus 101 ~~~~l~v~nlp~~~t~~~l~~~f~~~G-~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~ 179 (402)
..++|||+|||+++++++|+++|++|| +|..+.+..+ .++|||||+|.+.++|++|++.|||.. ++|+ .|.|.
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~---~~rGfaFV~F~~~e~A~~Ai~~lng~~-l~Gr--~i~V~ 100 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR---DFDGTGALEFPSEEILVEALERLNNIE-FRGS--VITVE 100 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC---SSSCCEEEEESSHHHHHHHHHHTTTEE-ETTE--EEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC---CCCCEEEEEECCHHHHHHHHHHcCCCE-ECCe--EEEEE
Confidence 367999999999999999999999999 8999998643 478999999999999999999999987 6665 58999
Q ss_pred EcCCHH
Q 015716 180 WADTEK 185 (402)
Q Consensus 180 ~a~~~~ 185 (402)
++....
T Consensus 101 ~a~~~p 106 (111)
T 2jvr_A 101 RDDNPP 106 (111)
T ss_dssp ESCC--
T ss_pred ECCCCC
Confidence 987654
No 284
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.60 E-value=2.2e-15 Score=117.80 Aligned_cols=76 Identities=18% Similarity=0.397 Sum_probs=67.2
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCc
Q 015716 11 SEERVKLFVGQVPKH-MTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (402)
Q Consensus 11 ~~~~~~l~V~nLp~~-~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~ 89 (402)
....++|||+|||++ +++++|+++|++||.|.+|++ ++|||||+|.+.++|++|++.|++.. +.| +.|
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~-~~g--~~l 92 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRV-LAG--QTL 92 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCE-ETT--EEC
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCE-ECC--eEE
Confidence 345589999999999 999999999999999999998 56899999999999999999997766 666 788
Q ss_pred cccccCcc
Q 015716 90 QVKYADGE 97 (402)
Q Consensus 90 ~~~~~~~~ 97 (402)
.+.++...
T Consensus 93 ~V~~a~~~ 100 (110)
T 1wf1_A 93 DINMAGEP 100 (110)
T ss_dssp CEEESCCC
T ss_pred EEEECCCC
Confidence 88887643
No 285
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=3.4e-15 Score=113.17 Aligned_cols=79 Identities=23% Similarity=0.302 Sum_probs=67.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCc
Q 015716 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (402)
Q Consensus 10 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~ 89 (402)
.....++|||+|||+++++++|+++|++||.|.+| +.++.+++ ||||+|.+.++|++||+ |++.. +.| +.|
T Consensus 4 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~-~~g--~~l 74 (94)
T 2e5g_A 4 GSSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHS-LGG--HRL 74 (94)
T ss_dssp CCTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCE-ETT--EEC
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeE-ECC--EEE
Confidence 45567899999999999999999999999999987 66666565 99999999999999999 97765 666 778
Q ss_pred cccccCcc
Q 015716 90 QVKYADGE 97 (402)
Q Consensus 90 ~~~~~~~~ 97 (402)
.|.++..+
T Consensus 75 ~V~~a~~~ 82 (94)
T 2e5g_A 75 RVRPREQK 82 (94)
T ss_dssp CCBCSCCS
T ss_pred EEEECCcC
Confidence 88776543
No 286
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.7e-15 Score=119.86 Aligned_cols=84 Identities=17% Similarity=0.221 Sum_probs=72.8
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCCeeE-EEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEE
Q 015716 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKD-LQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (402)
Q Consensus 101 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~-~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~ 179 (402)
..++|||+|||+++++++|+++|+.||.|.+ +.+..+.+++++|||||+|.+.++|.+|++ |||.. ++|+ .|.|.
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~-~~gr--~i~V~ 99 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQY-MGNR--FIQVH 99 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBC-STTS--CBEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCe-ECCc--EEEEE
Confidence 4689999999999999999999999999988 455555689999999999999999999999 99977 7776 58899
Q ss_pred EcCCHHHHH
Q 015716 180 WADTEKERQ 188 (402)
Q Consensus 180 ~a~~~~~~~ 188 (402)
++..+....
T Consensus 100 ~a~~~~~~~ 108 (124)
T 1wel_A 100 PITKKGMLE 108 (124)
T ss_dssp EECHHHHHH
T ss_pred ECCHHHHHH
Confidence 988765443
No 287
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.60 E-value=1.8e-15 Score=119.13 Aligned_cols=66 Identities=18% Similarity=0.207 Sum_probs=58.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCC
Q 015716 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (402)
Q Consensus 11 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g 84 (402)
....++|||+|||+++++++|+++|++||+|.+|.|+.+ |||||+|.+.++|++||+.||+.. +.|
T Consensus 13 ~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~-~~g 78 (115)
T 3beg_B 13 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTK-FRS 78 (115)
T ss_dssp ----CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCB-CCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCE-ECC
Confidence 356799999999999999999999999999999999876 799999999999999999998776 666
No 288
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.1e-15 Score=115.75 Aligned_cols=82 Identities=24% Similarity=0.376 Sum_probs=68.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCC-eeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCC
Q 015716 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFAL-VDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (402)
Q Consensus 10 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~-v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~ 88 (402)
.....++|||+|||.++++++|+++|++||. |..+.+. ++|||||+|.+.++|++|++.||+...+.| +.
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g--~~ 74 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHG--KI 74 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETT--EE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECC--EE
Confidence 4567899999999999999999999999999 6666652 468999999999999999999987233666 88
Q ss_pred ccccccCccccc
Q 015716 89 LQVKYADGELER 100 (402)
Q Consensus 89 ~~~~~~~~~~~~ 100 (402)
|.+.++.++..+
T Consensus 75 l~v~~a~~~~~~ 86 (93)
T 2cqh_A 75 MEVDYSVSKKLR 86 (93)
T ss_dssp CEEEECCCCCCC
T ss_pred EEEEEccCcccc
Confidence 888888765443
No 289
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.60 E-value=2e-15 Score=133.56 Aligned_cols=84 Identities=15% Similarity=0.262 Sum_probs=75.2
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCC--CeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEE
Q 015716 101 LEHKLFIGMLPKNVSEAEVSALFSIYG--TIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLV 177 (402)
Q Consensus 101 ~~~~l~v~nlp~~~t~~~l~~~f~~~G--~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~ 177 (402)
..++|||+||++++++++|+++|++|| .|++|+|++++ +++++|||||+|.+.++|++||+.||+.. +.|+ .|.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~-~~Gr--~l~ 143 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRE-LHGQ--NPV 143 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSC-BTTB--CCE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCe-ECCE--EeE
Confidence 367899999999999999999999999 99999999996 89999999999999999999999999987 6665 589
Q ss_pred EEEcCCHHHH
Q 015716 178 VKWADTEKER 187 (402)
Q Consensus 178 v~~a~~~~~~ 187 (402)
|.++......
T Consensus 144 V~~a~~~~~~ 153 (229)
T 3q2s_C 144 VTPVNKQFLS 153 (229)
T ss_dssp EEECCHHHHH
T ss_pred EEECCCCccc
Confidence 9999866543
No 290
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.6e-15 Score=118.36 Aligned_cols=81 Identities=26% Similarity=0.477 Sum_probs=71.7
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCC-eeEEEEe-eCC-CCCcceEEEEEeCCHHHHHHHHHHHc-C-CcccCCCceeE
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFSIYGT-IKDLQIL-RGS-QQTSKGCAFLKYETKEQALAALEAIN-G-KHKMEGSSVPL 176 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~~~G~-v~~~~i~-~~~-~~~~~g~afV~f~~~~~A~~A~~~l~-g-~~~~~g~~~~l 176 (402)
.++|||+|||.++++++|+++|++||. |.++.++ .+. ++.++|||||+|.+.++|.+|++.|+ | .. ++|+ .|
T Consensus 8 ~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~-~~g~--~l 84 (109)
T 2dis_A 8 NCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQ-LWGH--QI 84 (109)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSC-BTTB--CC
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCce-ecCC--eE
Confidence 679999999999999999999999998 9999998 555 67899999999999999999999995 4 54 7775 58
Q ss_pred EEEEcCCHH
Q 015716 177 VVKWADTEK 185 (402)
Q Consensus 177 ~v~~a~~~~ 185 (402)
.|.|+.++.
T Consensus 85 ~V~~a~~~~ 93 (109)
T 2dis_A 85 AVDWAEPEI 93 (109)
T ss_dssp EEEESCSSC
T ss_pred EEEEcCCCC
Confidence 999998654
No 291
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=3.4e-15 Score=114.30 Aligned_cols=77 Identities=30% Similarity=0.537 Sum_probs=69.6
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEE
Q 015716 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (402)
Q Consensus 100 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~ 179 (402)
...++|||+|||.++++++|+++|++||.|.+|++.++ +|||||+|.+.++|.+|++.|||.. ++|+ .|.|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~-----kg~afV~f~~~~~a~~a~~~l~g~~-~~g~--~l~v~ 84 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-----KGFGFIRLETRTLAEIAKVELDNMP-LRGK--QLRVR 84 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-----TTEEEEECSSSHHHHHHHHHHTTCC-BTTB--CCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCEEEEEECCHHHHHHHHHHhCCCE-eCCc--eEEEE
Confidence 34679999999999999999999999999999999865 8999999999999999999999988 6665 58999
Q ss_pred EcCCH
Q 015716 180 WADTE 184 (402)
Q Consensus 180 ~a~~~ 184 (402)
++.++
T Consensus 85 ~a~~~ 89 (99)
T 2cpj_A 85 FACHS 89 (99)
T ss_dssp ESSCC
T ss_pred EcCCC
Confidence 98764
No 292
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=2.7e-15 Score=117.32 Aligned_cols=78 Identities=19% Similarity=0.316 Sum_probs=69.0
Q ss_pred ccccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEE
Q 015716 99 ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (402)
Q Consensus 99 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v 178 (402)
.+..++|||+|||+++++++|+++|++||.|.+|.+++ ++|||||+|.+.++|++|++.|||.. ++|+ .|.|
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~-~~g~--~l~V 78 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-----GGITAIVEFLEPLEARKAFRHLAYSK-FHHV--PLYL 78 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-----SSSCEEEEESCHHHHHHHHHHHTTCB-SSSS--BCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCCEEEEEeCCHHHHHHHHHHhCCCE-ECCe--EEEE
Confidence 33467999999999999999999999999999999875 48899999999999999999999988 6665 5888
Q ss_pred EEcCCH
Q 015716 179 KWADTE 184 (402)
Q Consensus 179 ~~a~~~ 184 (402)
.|+...
T Consensus 79 ~~a~~~ 84 (111)
T 1whx_A 79 EWAPIG 84 (111)
T ss_dssp EEEETT
T ss_pred EECCCC
Confidence 888653
No 293
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=4.2e-15 Score=114.67 Aligned_cols=80 Identities=19% Similarity=0.348 Sum_probs=71.0
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEE
Q 015716 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (402)
Q Consensus 100 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v 178 (402)
...++|||+|||.++++++|+++|++||.|.+|.|++++ ++.++|||||+|.+.++|++|++. +.. ++|+ .|.|
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~-~~g~--~l~v 87 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RHM-IDGR--WCDC 87 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--CEE-ETTE--EEEE
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc--CCe-eCCe--EEEE
Confidence 346889999999999999999999999999999999986 699999999999999999999983 443 6665 5899
Q ss_pred EEcCCH
Q 015716 179 KWADTE 184 (402)
Q Consensus 179 ~~a~~~ 184 (402)
.++.++
T Consensus 88 ~~a~~~ 93 (103)
T 2cqg_A 88 KLPNSK 93 (103)
T ss_dssp ECCCTT
T ss_pred EecCCC
Confidence 998765
No 294
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.8e-15 Score=119.41 Aligned_cols=82 Identities=23% Similarity=0.409 Sum_probs=73.4
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEE
Q 015716 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (402)
Q Consensus 100 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v 178 (402)
...++|||+|||.++++++|+++|++||.|..|.|+++. ++.++|||||+|.+.++|++|++. ++.. ++|+ .|.|
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~-~~g~--~l~V 100 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHS-IDGR--VVEP 100 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEE-ETTE--EEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcE-ECCE--EEEE
Confidence 346899999999999999999999999999999999986 689999999999999999999987 8866 6665 6899
Q ss_pred EEcCCHH
Q 015716 179 KWADTEK 185 (402)
Q Consensus 179 ~~a~~~~ 185 (402)
.++.++.
T Consensus 101 ~~a~~~~ 107 (116)
T 1x4b_A 101 KRAVARE 107 (116)
T ss_dssp ECCSSCC
T ss_pred EECCCCc
Confidence 9987653
No 295
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.59 E-value=4.8e-15 Score=117.70 Aligned_cols=77 Identities=17% Similarity=0.290 Sum_probs=68.4
Q ss_pred ceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceE-EEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEEc
Q 015716 103 HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGC-AFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181 (402)
Q Consensus 103 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~a 181 (402)
-.|||+||++.+|+++|+++|++||+|.+|++..+ ++|| |||+|.+.++|++|++.|||..+.+++ +.|+|.|+
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~-~~LrI~~a 103 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNAC-CTLRIDFS 103 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTE-EEEEEEEC
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCC-cEEEEEec
Confidence 46899999999999999999999999999998864 3677 999999999999999999999965543 67999999
Q ss_pred CCH
Q 015716 182 DTE 184 (402)
Q Consensus 182 ~~~ 184 (402)
+.+
T Consensus 104 k~~ 106 (130)
T 3zzy_A 104 KLT 106 (130)
T ss_dssp SCS
T ss_pred CCC
Confidence 865
No 296
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.59 E-value=3.3e-15 Score=111.83 Aligned_cols=78 Identities=18% Similarity=0.394 Sum_probs=63.7
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEE
Q 015716 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (402)
Q Consensus 100 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~ 179 (402)
....+|||+|||+++++++|+++|++||.|.+|+|+++ ++|||||+|.+.++|++ +++.. +.++.+.|.|.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~----srGfaFV~F~~~~~A~~----~~~~~-~~~~g~~v~v~ 79 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----FRAFAFVTFADDKVAQS----LCGED-LIIKGISVHIS 79 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS----CCSEEEEEESCHHHHHH----HTTCE-EEETTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC----CCCEEEEEECCHHHHHH----HcCCC-cccCCEEEEEE
Confidence 34689999999999999999999999999999999985 79999999999999983 56765 44455689999
Q ss_pred EcCCHHH
Q 015716 180 WADTEKE 186 (402)
Q Consensus 180 ~a~~~~~ 186 (402)
++.++..
T Consensus 80 ~a~~k~~ 86 (89)
T 3d2w_A 80 NAEPKHN 86 (89)
T ss_dssp ECC----
T ss_pred EcCCCCc
Confidence 9987654
No 297
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.59 E-value=1.4e-15 Score=113.97 Aligned_cols=80 Identities=23% Similarity=0.292 Sum_probs=61.1
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCC
Q 015716 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (402)
Q Consensus 9 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~ 88 (402)
......++|||+|||+++|+++|+++|++||.|.+|+|+++ ++|||||+|.+.++|++ +++.. +.+..+.
T Consensus 6 ~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~-~~~~g~~ 75 (89)
T 3d2w_A 6 HHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGED-LIIKGIS 75 (89)
T ss_dssp -----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCE-EEETTEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCC-cccCCEE
Confidence 45668899999999999999999999999999999999874 78999999999999984 33443 3333477
Q ss_pred ccccccCccc
Q 015716 89 LQVKYADGEL 98 (402)
Q Consensus 89 ~~~~~~~~~~ 98 (402)
+.+.++.++.
T Consensus 76 v~v~~a~~k~ 85 (89)
T 3d2w_A 76 VHISNAEPKH 85 (89)
T ss_dssp EEEEECC---
T ss_pred EEEEEcCCCC
Confidence 8887776544
No 298
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.59 E-value=2.5e-15 Score=120.13 Aligned_cols=80 Identities=21% Similarity=0.377 Sum_probs=72.7
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEE
Q 015716 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (402)
Q Consensus 101 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~ 179 (402)
..++|||+|||.++++++|+++|++||.|.+|.+++++ ++.++|||||+|.+.++|.+|+ .|||.. ++|+ .|.|.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~-~~g~--~l~V~ 110 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETV-FRGR--TIKVL 110 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCE-ETTE--ECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCe-ECCe--EEEEE
Confidence 37899999999999999999999999999999999985 8899999999999999999999 799987 6665 58999
Q ss_pred EcCCH
Q 015716 180 WADTE 184 (402)
Q Consensus 180 ~a~~~ 184 (402)
++...
T Consensus 111 ~a~~~ 115 (124)
T 2jwn_A 111 PKRTN 115 (124)
T ss_dssp ESSCC
T ss_pred ECCCC
Confidence 88753
No 299
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.58 E-value=4.8e-15 Score=122.16 Aligned_cols=82 Identities=12% Similarity=0.147 Sum_probs=69.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCcc
Q 015716 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (402)
Q Consensus 11 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~ 90 (402)
+....+|||+||++.+|+++|+++|++||+|++|+|+.++ ++|||||+|.+.++|++|++.|++..+ .+..+.|+
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i-~g~g~~L~ 117 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNI-YNACCTLR 117 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCS-SSSCSCEE
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEe-cCCCcEEE
Confidence 3445678999999999999999999999999999987542 578999999999999999999988874 33347888
Q ss_pred ccccCcc
Q 015716 91 VKYADGE 97 (402)
Q Consensus 91 ~~~~~~~ 97 (402)
+.+++.+
T Consensus 118 V~~Ak~~ 124 (164)
T 1sjr_A 118 IDFSKLT 124 (164)
T ss_dssp EEECSSS
T ss_pred EEEecCC
Confidence 8887754
No 300
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=1.8e-15 Score=120.03 Aligned_cols=80 Identities=18% Similarity=0.194 Sum_probs=70.3
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCCe----eEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEE
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFSIYGTI----KDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLV 177 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v----~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~ 177 (402)
..+|||+|||+++|+++|+++|++||.| .+|.|+++.+|+++|||||+|.+.++|++|++. |+.. ++++ .|.
T Consensus 23 ~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~-l~gR--~i~ 98 (123)
T 2dha_A 23 QVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDL-LGKR--YIE 98 (123)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEE-SSSC--EEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCe-eCCe--EEE
Confidence 5789999999999999999999999975 689999998999999999999999999999986 8865 7776 477
Q ss_pred EEEcCCHH
Q 015716 178 VKWADTEK 185 (402)
Q Consensus 178 v~~a~~~~ 185 (402)
|..+..+.
T Consensus 99 V~~a~~~e 106 (123)
T 2dha_A 99 LFRSTAAE 106 (123)
T ss_dssp CEEECHHH
T ss_pred EEECCHHH
Confidence 77776443
No 301
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.58 E-value=3.5e-15 Score=121.92 Aligned_cols=80 Identities=29% Similarity=0.488 Sum_probs=71.6
Q ss_pred ccccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEE
Q 015716 99 ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLV 177 (402)
Q Consensus 99 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~ 177 (402)
....++|||+|||.++++++|+++|++||.|.++++++++ ++.++|||||+|.+.++|++|++.|||.. ++|+ .|.
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g~--~l~ 136 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESE-LFGR--TIR 136 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEE-ETTE--EEE
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCE-ECCE--EEE
Confidence 3347899999999999999999999999999999999985 78999999999999999999999999977 6665 588
Q ss_pred EEEc
Q 015716 178 VKWA 181 (402)
Q Consensus 178 v~~a 181 (402)
|.+|
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 8765
No 302
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=1.6e-15 Score=117.63 Aligned_cols=77 Identities=29% Similarity=0.416 Sum_probs=67.3
Q ss_pred ccceEEEcCCCCC-CcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCc-ccCCCceeEEE
Q 015716 101 LEHKLFIGMLPKN-VSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKH-KMEGSSVPLVV 178 (402)
Q Consensus 101 ~~~~l~v~nlp~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~~g~~~~l~v 178 (402)
..++|||+|||++ +++++|+++|++||.|.+|+|++. +|||||+|.+.++|.+|++.|++.. .+.|+ .|.|
T Consensus 24 p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr--~l~V 96 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM-----KSQAFIEMETREDAMAMVDHCLKKALWFQGR--CVKV 96 (112)
T ss_dssp CCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT-----TTEEEEECSSHHHHHHHHHHHHHSCCCSSSS--CCEE
T ss_pred CCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC-----CCEEEEEECCHHHHHHHHHHhccCCceECCE--EEEE
Confidence 4789999999998 999999999999999999999853 8999999999999999999987532 36665 5899
Q ss_pred EEcCCH
Q 015716 179 KWADTE 184 (402)
Q Consensus 179 ~~a~~~ 184 (402)
.++..+
T Consensus 97 ~~a~~~ 102 (112)
T 1x4f_A 97 DLSEKY 102 (112)
T ss_dssp EEECSC
T ss_pred EECccc
Confidence 998754
No 303
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=4.1e-15 Score=110.44 Aligned_cols=76 Identities=26% Similarity=0.569 Sum_probs=67.5
Q ss_pred ccccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHH-cCCcccCCCceeEE
Q 015716 99 ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAI-NGKHKMEGSSVPLV 177 (402)
Q Consensus 99 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l-~g~~~~~g~~~~l~ 177 (402)
....++|||+|||.++++++|+++|++||.|.++.++++ +|||||+|.+.++|.+|++.| +|.. ++|+ .|.
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~-----kg~afV~f~~~~~A~~a~~~l~~~~~-~~g~--~l~ 80 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR-----QQCAFIQFATRQAAEVAAEKSFNKLI-VNGR--RLN 80 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG-----GTEEEEEESSHHHHHHHHHTTTTTCE-ETTE--ECC
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC-----CCEEEEEECCHHHHHHHHHHhcCCee-ECCC--EEE
Confidence 344689999999999999999999999999999999974 899999999999999999998 8876 6665 588
Q ss_pred EEEcC
Q 015716 178 VKWAD 182 (402)
Q Consensus 178 v~~a~ 182 (402)
|.|++
T Consensus 81 v~~ak 85 (85)
T 2ytc_A 81 VKWGR 85 (85)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 88874
No 304
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.58 E-value=4.8e-15 Score=122.18 Aligned_cols=79 Identities=16% Similarity=0.257 Sum_probs=69.3
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEEc
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~a 181 (402)
..+|||+||++.+++++|+++|++||+|++|.|..+. ++|||||+|.+.++|++|++.|||..+.+++ +.|+|.|+
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~---~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g-~~L~V~~A 121 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN---NQFQALLQYADPVSAQHAKLSLDGQNIYNAC-CTLRIDFS 121 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS---SCEEEEEEESCHHHHHHHHHHSTTBCSSSSC-SCEEEEEC
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC---CCCEEEEEECCHHHHHHHHHHhCCCEecCCC-cEEEEEEe
Confidence 4579999999999999999999999999999997542 5789999999999999999999999854432 46999999
Q ss_pred CCH
Q 015716 182 DTE 184 (402)
Q Consensus 182 ~~~ 184 (402)
+.+
T Consensus 122 k~~ 124 (164)
T 1sjr_A 122 KLT 124 (164)
T ss_dssp SSS
T ss_pred cCC
Confidence 865
No 305
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=7.1e-15 Score=110.41 Aligned_cols=74 Identities=30% Similarity=0.510 Sum_probs=67.5
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEE
Q 015716 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (402)
Q Consensus 101 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~ 180 (402)
..++|||+|||.++++++|+++|++||.|.++.++ +|||||+|.+.++|++|++.|||.. ++|+ .|.|.+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~-~~g~--~l~v~~ 76 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLHHYK-LHGV--NINVEA 76 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-------TTEEEEEESSHHHHHHHHHHHTTCB-CSSC--BCEEEC
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhcCCc-cCCc--EEEEEE
Confidence 36799999999999999999999999999999997 6799999999999999999999987 6665 589999
Q ss_pred cCCH
Q 015716 181 ADTE 184 (402)
Q Consensus 181 a~~~ 184 (402)
+.++
T Consensus 77 a~~~ 80 (90)
T 2dnq_A 77 SKNK 80 (90)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 8765
No 306
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.58 E-value=2.7e-15 Score=115.37 Aligned_cols=76 Identities=28% Similarity=0.500 Sum_probs=69.4
Q ss_pred ceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEEcC
Q 015716 103 HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWAD 182 (402)
Q Consensus 103 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~a~ 182 (402)
++|||+|||.++++++|+++|++||.|.+|.++++ ++|||||+|.+.++|++|++.|||.. ++|+ .|.|.++.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~-~~g~--~l~V~~a~ 73 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKV-ICGS--RVRVELST 73 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSC-SSSC--CCEEEESS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCe-ECCc--EEEEEEcc
Confidence 47999999999999999999999999999999987 68999999999999999999999987 6666 48999987
Q ss_pred CHH
Q 015716 183 TEK 185 (402)
Q Consensus 183 ~~~ 185 (402)
.+.
T Consensus 74 ~~~ 76 (101)
T 2hvz_A 74 GMP 76 (101)
T ss_dssp SCC
T ss_pred CCC
Confidence 653
No 307
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=4.3e-15 Score=115.22 Aligned_cols=78 Identities=23% Similarity=0.391 Sum_probs=67.9
Q ss_pred ccceEEE--cCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcc--cCCCceeE
Q 015716 101 LEHKLFI--GMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK--MEGSSVPL 176 (402)
Q Consensus 101 ~~~~l~v--~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~~g~~~~l 176 (402)
..++||| +||++++++++|+++|++||+|.+|.++.+ +|||||+|.+.++|++|++.|||..+ ..+..+.|
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~-----rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l 98 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN-----KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITL 98 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT-----CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEEC
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEE
Confidence 3678999 779999999999999999999999988753 79999999999999999999999864 12345789
Q ss_pred EEEEcCC
Q 015716 177 VVKWADT 183 (402)
Q Consensus 177 ~v~~a~~ 183 (402)
+|.++..
T Consensus 99 ~v~~a~~ 105 (114)
T 2cq2_A 99 YLNFVEK 105 (114)
T ss_dssp EEEEESC
T ss_pred EEEeccc
Confidence 9999864
No 308
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.58 E-value=3.8e-15 Score=115.82 Aligned_cols=79 Identities=33% Similarity=0.651 Sum_probs=69.6
Q ss_pred ccccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEE
Q 015716 99 ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (402)
Q Consensus 99 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v 178 (402)
....++|||+|||.++++++|+++|++||.|.+|.++ +|||||+|.+.++|++|++.|||.. ++|+ .|.|
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------kg~afV~f~~~~~A~~Ai~~l~g~~-~~g~--~l~V 97 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------NGFAFVEFEEAESAAKAIEEVHGKS-FANQ--PLEV 97 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------TTEEEEECSSHHHHHHHHHHHTTCE-ETTE--ECEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHcCCCE-ECCe--EEEE
Confidence 3447899999999999999999999999999999998 7899999999999999999999988 5665 6899
Q ss_pred EEcCCHHHH
Q 015716 179 KWADTEKER 187 (402)
Q Consensus 179 ~~a~~~~~~ 187 (402)
.++..+..+
T Consensus 98 ~~a~~~~~r 106 (108)
T 2jvo_A 98 VYSKLPAKR 106 (108)
T ss_dssp ESCSCCC--
T ss_pred EEecCCCCC
Confidence 998876543
No 309
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=6.8e-15 Score=112.18 Aligned_cols=78 Identities=21% Similarity=0.400 Sum_probs=68.3
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEE
Q 015716 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (402)
Q Consensus 100 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~ 179 (402)
...++|||+|||.++++++|+++|++||.|. +.++.+ .++|||||+|.+.++|++|++.|||.. ++|+ .|.|.
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g~--~l~V~ 89 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ---GPRRRAFLHYPDSAAAQQAVSCLQGLR-LGTD--TLRVA 89 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCC-SSSS--CCEEE
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC---CCCcEEEEEECCHHHHHHHHHHhCCCE-ECCc--EEEEE
Confidence 3468999999999999999999999999997 666653 578999999999999999999999987 6665 58999
Q ss_pred EcCCH
Q 015716 180 WADTE 184 (402)
Q Consensus 180 ~a~~~ 184 (402)
++.++
T Consensus 90 ~a~~~ 94 (97)
T 2e5j_A 90 LARQQ 94 (97)
T ss_dssp ECCCC
T ss_pred EcCCC
Confidence 98765
No 310
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.57 E-value=2.1e-15 Score=115.05 Aligned_cols=83 Identities=25% Similarity=0.490 Sum_probs=73.2
Q ss_pred ccceEEEcCCCCCCcHHHHH----HhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeE
Q 015716 101 LEHKLFIGMLPKNVSEAEVS----ALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPL 176 (402)
Q Consensus 101 ~~~~l~v~nlp~~~t~~~l~----~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l 176 (402)
..++|||+|||.++++++|+ ++|++||.|.+|.+.+ ++.++|||||+|.+.++|.+|++.|||.. ++|+ .|
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g~--~l 81 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFP-FYDK--PM 81 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH--HHHHTTCEEEEESSHHHHHHHHHHHTTCE-ETTE--EC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc--CCCcCcEEEEEeCCHHHHHHHHHHhCCCE-ECCc--EE
Confidence 36899999999999999999 9999999999999874 46778999999999999999999999987 5664 69
Q ss_pred EEEEcCCHHHHH
Q 015716 177 VVKWADTEKERQ 188 (402)
Q Consensus 177 ~v~~a~~~~~~~ 188 (402)
.|.|+.++....
T Consensus 82 ~v~~a~~~~~~~ 93 (97)
T 1nu4_A 82 RIQYAKTDSDII 93 (97)
T ss_dssp EEEECSSCCTHH
T ss_pred EEEEccCCCccc
Confidence 999998765443
No 311
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=5.8e-15 Score=112.54 Aligned_cols=82 Identities=23% Similarity=0.355 Sum_probs=70.1
Q ss_pred cccCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCC
Q 015716 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (402)
Q Consensus 7 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~ 86 (402)
..+...+.++|||+|| ++++++|+++|++||+|.+|++. +++|||||+|.+.++|++||+.||+.. +.|
T Consensus 8 ~~~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~-~~g-- 76 (97)
T 1x5p_A 8 ERRAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQ-VES-- 76 (97)
T ss_dssp CCCCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEE-ETT--
T ss_pred ccCCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCe-ECC--
Confidence 3445667899999996 99999999999999999999984 467899999999999999999997776 566
Q ss_pred CCccccccCcccc
Q 015716 87 SPLQVKYADGELE 99 (402)
Q Consensus 87 ~~~~~~~~~~~~~ 99 (402)
+.|.+.++.++..
T Consensus 77 ~~l~v~~a~~~~~ 89 (97)
T 1x5p_A 77 VQLKVNIARKQPM 89 (97)
T ss_dssp EEEEEECCSSCCC
T ss_pred eEEEEEECCCCCC
Confidence 8888888876543
No 312
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.57 E-value=2.5e-15 Score=115.53 Aligned_cols=74 Identities=32% Similarity=0.617 Sum_probs=67.4
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEEc
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~a 181 (402)
.++|||+|||.++++++|+++|++||.|.++++.+ ++|||||+|.+.++|.+|++.|||.. ++|+ .|.|.|+
T Consensus 27 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~-~~g~--~l~V~~a 98 (101)
T 2la4_A 27 VTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP-----EKGCCFIKYDTHEQAAVCIVALANFP-FQGR--NLRTGWG 98 (101)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCE-ETTE--ECCCCBC
T ss_pred CCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhCCCe-ECCe--EEEEEec
Confidence 67999999999999999999999999999999984 48999999999999999999999987 6665 5888888
Q ss_pred CC
Q 015716 182 DT 183 (402)
Q Consensus 182 ~~ 183 (402)
.+
T Consensus 99 ~~ 100 (101)
T 2la4_A 99 KE 100 (101)
T ss_dssp CC
T ss_pred cC
Confidence 65
No 313
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.57 E-value=1.4e-15 Score=110.15 Aligned_cols=74 Identities=19% Similarity=0.407 Sum_probs=65.6
Q ss_pred eEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEEc
Q 015716 104 KLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181 (402)
Q Consensus 104 ~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~a 181 (402)
+|||+|||.++++++|+++|++||.|.++.+++++ ++.++|||||+|.+.++|.+|++. ++.. ++|+. |.|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~-~~g~~--l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHN-VGLSK--CEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCC-BTTBC--CCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCe-ECCEE--EEEEEC
Confidence 58999999999999999999999999999999886 688999999999999999999985 7766 77764 566554
No 314
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.57 E-value=2.2e-15 Score=114.66 Aligned_cols=81 Identities=21% Similarity=0.362 Sum_probs=70.2
Q ss_pred ccccccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeE
Q 015716 97 ELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPL 176 (402)
Q Consensus 97 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l 176 (402)
......++|||+|||.++++++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|++.|||.. ++|+ .|
T Consensus 11 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g~--~l 83 (96)
T 1fjc_A 11 KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAE-IDGR--SV 83 (96)
T ss_dssp STTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----EETTEEEEEEEEEESSHHHHHHHHHHTTEEE-ETTE--EE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----CCCCCcceEEEEEECCHHHHHHHHHHhCCCE-ECCe--EE
Confidence 344557899999999999999999999999988766 3467889999999999999999999999977 6665 58
Q ss_pred EEEEcCCH
Q 015716 177 VVKWADTE 184 (402)
Q Consensus 177 ~v~~a~~~ 184 (402)
.|.++.++
T Consensus 84 ~v~~a~~~ 91 (96)
T 1fjc_A 84 SLYYTGEK 91 (96)
T ss_dssp EEEECSSS
T ss_pred EEEEcCCC
Confidence 99998764
No 315
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.57 E-value=1.2e-14 Score=115.00 Aligned_cols=76 Identities=18% Similarity=0.228 Sum_probs=66.4
Q ss_pred ceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceE-EEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEEc
Q 015716 103 HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGC-AFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181 (402)
Q Consensus 103 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~a 181 (402)
..|||+||++.+++++|+++|++||.|.+|.|... .|| |||+|.+.++|.+|++.|||..+ .|..+.|+|.+|
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i-~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-----NGIQAMVEFESVLCAQKAKAALNGADI-YAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-----SSEEEEEEESSHHHHHHHHHHHTTCCC-BTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEe-cCCCeEEEEEEe
Confidence 34789999999999999999999999999999763 376 99999999999999999999984 444357999999
Q ss_pred CCH
Q 015716 182 DTE 184 (402)
Q Consensus 182 ~~~ 184 (402)
.++
T Consensus 100 k~~ 102 (124)
T 2e5i_A 100 RPT 102 (124)
T ss_dssp SCS
T ss_pred cCC
Confidence 765
No 316
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=5.5e-15 Score=115.27 Aligned_cols=78 Identities=22% Similarity=0.509 Sum_probs=70.6
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEE
Q 015716 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (402)
Q Consensus 100 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~ 179 (402)
...++|||+|||.++++++|+++|++||.|.+|+++++ +|||||+|.+.++|.+|++.|||.. ++|+ .|.|.
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~-~~g~--~l~v~ 94 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTT-IEGH--VVKCY 94 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCE-ETTE--ECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCE-ECCc--EEEEE
Confidence 34789999999999999999999999999999999986 8999999999999999999999987 6665 68999
Q ss_pred EcCCHH
Q 015716 180 WADTEK 185 (402)
Q Consensus 180 ~a~~~~ 185 (402)
|+.++.
T Consensus 95 ~a~~~~ 100 (109)
T 1x4g_A 95 WGKESP 100 (109)
T ss_dssp CCCCCC
T ss_pred ecCCCC
Confidence 987653
No 317
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.56 E-value=1.3e-15 Score=117.30 Aligned_cols=81 Identities=21% Similarity=0.431 Sum_probs=71.8
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEE
Q 015716 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (402)
Q Consensus 100 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~ 179 (402)
...++|||+|||.++++++|+++|++||.|.+|.++++.++.++|||||+|.+.++|++|++ ++.. ++|+ .|.|.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~-~~g~--~l~v~ 81 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQIN-FHGK--KLKLG 81 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCE-ETTE--ECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCe-ECCE--EEEEE
Confidence 34689999999999999999999999999999999999899999999999999999999998 7766 6665 57777
Q ss_pred EcCCHH
Q 015716 180 WADTEK 185 (402)
Q Consensus 180 ~a~~~~ 185 (402)
++..+.
T Consensus 82 ~a~~~~ 87 (102)
T 2xs2_A 82 PAIRKQ 87 (102)
T ss_dssp EEEECC
T ss_pred ECCcCc
Confidence 776543
No 318
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.56 E-value=8.9e-16 Score=125.99 Aligned_cols=85 Identities=24% Similarity=0.413 Sum_probs=70.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEE--E---eeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCC
Q 015716 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVN--I---IKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (402)
Q Consensus 10 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~--~---~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g 84 (402)
.....++|||+|||+++|+++|+++|++||.|.+|. + +....+++++|||||+|.+.++|++||+.||+.. +.|
T Consensus 41 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~-~~g 119 (143)
T 3egn_A 41 PGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYV-LFG 119 (143)
T ss_dssp CCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBE-ETT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCE-eCC
Confidence 355789999999999999999999999999988751 1 1112358899999999999999999999998776 666
Q ss_pred CCCCccccccCcc
Q 015716 85 ASSPLQVKYADGE 97 (402)
Q Consensus 85 ~~~~~~~~~~~~~ 97 (402)
+.|.|.++...
T Consensus 120 --~~l~V~~a~~~ 130 (143)
T 3egn_A 120 --KPMVVQFARSA 130 (143)
T ss_dssp --EECEEEECCCS
T ss_pred --cEEEEEECCCC
Confidence 88888887654
No 319
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=1.7e-14 Score=106.14 Aligned_cols=75 Identities=16% Similarity=0.201 Sum_probs=63.3
Q ss_pred CCCCe-EEEcCCCCCCCHHH----HHHHHHhc-CCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCC
Q 015716 12 EERVK-LFVGQVPKHMTEAQ----LLAMFKEF-ALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGA 85 (402)
Q Consensus 12 ~~~~~-l~V~nLp~~~t~~~----L~~~f~~~-G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~ 85 (402)
++..+ |||+|||..+++++ |+++|++| |+|.+| |+ |+|||+|.+.++|++|++.|++.. +.|
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~-l~g- 73 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENED-VFG- 73 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCC-SSS-
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCc-cCC-
Confidence 34455 99999999999998 55899999 599998 34 999999999999999999998877 566
Q ss_pred CCCccccccCcccc
Q 015716 86 SSPLQVKYADGELE 99 (402)
Q Consensus 86 ~~~~~~~~~~~~~~ 99 (402)
++|++.++....+
T Consensus 74 -r~i~v~~A~~~sd 86 (96)
T 2diu_A 74 -NRIIVSFTPKNRE 86 (96)
T ss_dssp -SCCEEESSCCSCC
T ss_pred -ceEEEEecCCCcc
Confidence 8999988876543
No 320
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.56 E-value=2.9e-15 Score=112.06 Aligned_cols=75 Identities=15% Similarity=0.267 Sum_probs=66.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCccc
Q 015716 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 91 (402)
Q Consensus 12 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~~ 91 (402)
...++|||+|||+++++++|+++|++| .|.+|++. +++|||||+|.+.++|++|++.||+.. +.| +.+.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~-~~g--~~l~V 72 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYS-FRG--KDLIV 72 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEE-ETT--EEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCe-ECC--cEEEE
Confidence 467899999999999999999999999 99999984 578999999999999999999998766 666 78888
Q ss_pred cccCc
Q 015716 92 KYADG 96 (402)
Q Consensus 92 ~~~~~ 96 (402)
.++..
T Consensus 73 ~~a~~ 77 (88)
T 1wg1_A 73 QLQPT 77 (88)
T ss_dssp EECCC
T ss_pred EEcCC
Confidence 87654
No 321
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.56 E-value=4.3e-15 Score=118.06 Aligned_cols=79 Identities=19% Similarity=0.217 Sum_probs=68.7
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCCee--EEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEE
Q 015716 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIK--DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (402)
Q Consensus 101 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~--~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v 178 (402)
..++|||+|||+++++++|+++|++| .|. +|+|++|++|+++|||||+|.+.++|++|++. ++.. ++|+ .|.|
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~-l~gR--~I~V 115 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKER-IGHR--YIEV 115 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCC-BTTB--CCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCE-ECCE--EEEE
Confidence 36789999999999999999999999 677 89999998899999999999999999999985 6655 7776 4677
Q ss_pred EEcCCH
Q 015716 179 KWADTE 184 (402)
Q Consensus 179 ~~a~~~ 184 (402)
..+..+
T Consensus 116 ~~a~~~ 121 (126)
T 2hgm_A 116 FKSSQE 121 (126)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 776543
No 322
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=1.2e-14 Score=109.69 Aligned_cols=75 Identities=23% Similarity=0.487 Sum_probs=67.6
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEE
Q 015716 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (402)
Q Consensus 100 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~ 179 (402)
...++|||+|||.++++++|+++|++||.|.+|.+++ +||||+|.+.++|++|++.|||.. +.|+ .|.|.
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~-------~~afV~f~~~~~a~~A~~~l~g~~-~~g~--~l~V~ 77 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK-------DYAFVHMERAEDAVEAIRGLDNTE-FQGK--RMHVQ 77 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS-------SEEEEEESCHHHHHHHHHHHTTEE-ETTE--EEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC-------CEEEEEECCHHHHHHHHHHhCCCe-eCCc--EEEEE
Confidence 3468999999999999999999999999999999984 399999999999999999999987 6664 69999
Q ss_pred EcCCH
Q 015716 180 WADTE 184 (402)
Q Consensus 180 ~a~~~ 184 (402)
++.++
T Consensus 78 ~a~~~ 82 (92)
T 2dgt_A 78 LSTSR 82 (92)
T ss_dssp ESSCC
T ss_pred EccCC
Confidence 99765
No 323
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.4e-14 Score=114.13 Aligned_cols=81 Identities=25% Similarity=0.464 Sum_probs=70.1
Q ss_pred ccccceEEEcCCCCCCcHHHHHHhhccCCCe----eEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCce
Q 015716 99 ERLEHKLFIGMLPKNVSEAEVSALFSIYGTI----KDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 174 (402)
Q Consensus 99 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v----~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~ 174 (402)
....++|||+|||.++++++|+++|++||.| ..+++. ++.++|||||+|.+.++|++|++.|||.. ++|+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~---~g~~~g~afV~f~~~~~a~~Ai~~l~g~~-~~g~-- 95 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM---TGRMRGQAFITFPNKEIAWQALHLVNGYK-LYGK-- 95 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE---CSSSCSEEEEECSSHHHHHHHHHHSTTCB-CSSC--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC---CCccceEEEEEECCHHHHHHHHHHhCCCE-eCCc--
Confidence 3446899999999999999999999999998 455554 67889999999999999999999999987 6665
Q ss_pred eEEEEEcCCHH
Q 015716 175 PLVVKWADTEK 185 (402)
Q Consensus 175 ~l~v~~a~~~~ 185 (402)
.|.|.++..+.
T Consensus 96 ~l~v~~a~~~~ 106 (115)
T 2cpx_A 96 ILVIEFGKNKK 106 (115)
T ss_dssp BCEEEECCCCS
T ss_pred EEEEEEccCCC
Confidence 58999998753
No 324
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.55 E-value=9.4e-15 Score=123.97 Aligned_cols=81 Identities=26% Similarity=0.456 Sum_probs=74.7
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEE
Q 015716 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (402)
Q Consensus 101 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~ 180 (402)
..++|||+|||+++++++|+++|++||.|.+|.|+.+.++.++|||||+|.+.++|.+|++.|||.. ++|+ .|.|.|
T Consensus 87 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~-l~Gr--~l~V~~ 163 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVP-LDGR--PMDIQL 163 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCB-CSSS--BCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCE-ECCE--EEEEEE
Confidence 3679999999999999999999999999999999999889999999999999999999999999987 6775 588888
Q ss_pred cCCH
Q 015716 181 ADTE 184 (402)
Q Consensus 181 a~~~ 184 (402)
+...
T Consensus 164 a~~~ 167 (177)
T 2f3j_A 164 VASQ 167 (177)
T ss_dssp ESSG
T ss_pred ecCC
Confidence 8765
No 325
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.55 E-value=1.4e-14 Score=110.31 Aligned_cols=75 Identities=27% Similarity=0.518 Sum_probs=67.1
Q ss_pred cccceEEEcCCCC-CCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEE
Q 015716 100 RLEHKLFIGMLPK-NVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (402)
Q Consensus 100 ~~~~~l~v~nlp~-~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v 178 (402)
...++|||+|||. ++++++|+++|++||.|.++++. +|||||+|.+.++|.+|++.|||.. ++|+ .|.|
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~Ai~~l~g~~-~~g~--~l~V 89 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIEXESQEM-NFGK--KLIL 89 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHTTSE-ETTE--ECEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCE-ECCE--EEEE
Confidence 3478999999998 99999999999999999999984 7899999999999999999999987 6665 5888
Q ss_pred EEcCCH
Q 015716 179 KWADTE 184 (402)
Q Consensus 179 ~~a~~~ 184 (402)
.++..+
T Consensus 90 ~~a~~~ 95 (97)
T 2xnq_A 90 EVSSSN 95 (97)
T ss_dssp EECCCC
T ss_pred EecCCC
Confidence 888754
No 326
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.32 E-value=3.8e-16 Score=123.38 Aligned_cols=85 Identities=25% Similarity=0.409 Sum_probs=75.3
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCCeeE--------EEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccC
Q 015716 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKD--------LQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKME 170 (402)
Q Consensus 100 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~--------~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~ 170 (402)
...++|||+|||.++++++|+++|++||.|.. |++++++ ++.++|||||+|.+.++|++|++.|||.. ++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~-~~ 83 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE-FS 83 (116)
Confidence 34678999999999999999999999999998 8899885 68999999999999999999999999987 66
Q ss_pred CCceeEEEEEcCCHHHH
Q 015716 171 GSSVPLVVKWADTEKER 187 (402)
Q Consensus 171 g~~~~l~v~~a~~~~~~ 187 (402)
|+ .|.|.++.++...
T Consensus 84 g~--~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 84 GN--PIKVSFATRRADF 98 (116)
Confidence 65 5899998776443
No 327
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=2e-14 Score=110.64 Aligned_cols=80 Identities=24% Similarity=0.441 Sum_probs=69.6
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEE
Q 015716 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (402)
Q Consensus 100 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v 178 (402)
...++|||+|||.++++++|+++|+.|+ .+.++.+. ++.++|||||+|.+.++|++|++.|||.. ++|+ .|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g~--~l~V 86 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGE-IDGN--KVTL 86 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCE-ETTE--ECEE
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCe-ECCe--EEEE
Confidence 3468999999999999999999999874 56777775 78899999999999999999999999987 6665 6899
Q ss_pred EEcCCHH
Q 015716 179 KWADTEK 185 (402)
Q Consensus 179 ~~a~~~~ 185 (402)
.++.++.
T Consensus 87 ~~a~~~~ 93 (102)
T 2fc8_A 87 DWAKPKG 93 (102)
T ss_dssp EECCCCC
T ss_pred EEecCCC
Confidence 9998653
No 328
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.54 E-value=2.4e-14 Score=113.16 Aligned_cols=76 Identities=21% Similarity=0.207 Sum_probs=64.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccE-EEEEeCCHHHHHHHHHHhcCCCCCCCCCCCccccc
Q 015716 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGC-CFVICPSRQEADKAVNACHNKKTLPGASSPLQVKY 93 (402)
Q Consensus 15 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~-afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~~~~ 93 (402)
..|||+||++.+++++|+++|++||.|.+|+|+.. .|| |||+|.+.++|++|++.||+.. +.|..+.|++.+
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~-i~g~~~~l~V~~ 98 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGAD-IYAGCCTLKIEY 98 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCC-CBTTBSEEEEEC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCE-ecCCCeEEEEEE
Confidence 34679999999999999999999999999999652 286 9999999999999999998877 444446788888
Q ss_pred cCcc
Q 015716 94 ADGE 97 (402)
Q Consensus 94 ~~~~ 97 (402)
+++.
T Consensus 99 Ak~~ 102 (124)
T 2e5i_A 99 ARPT 102 (124)
T ss_dssp CSCS
T ss_pred ecCC
Confidence 7654
No 329
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1.5e-14 Score=108.68 Aligned_cols=75 Identities=24% Similarity=0.463 Sum_probs=67.4
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEE
Q 015716 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (402)
Q Consensus 100 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~ 179 (402)
...++|||+|||.++++++|+++|++||.|.++++++ +||||+|.+.++|++|++.|||.. ++|+ .|.|.
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~-------~~afV~f~~~~~a~~A~~~l~g~~-~~g~--~l~v~ 76 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK-------DYAFVHMEKEADAKAAIAQLNGKE-VKGK--RINVE 76 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS-------SCEEEEESCHHHHHHHHHHHTTCE-ETTE--ECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC-------CEEEEEECCHHHHHHHHHHhCCCE-ECCc--EEEEE
Confidence 3468999999999999999999999999999999984 399999999999999999999987 6665 68999
Q ss_pred EcCCH
Q 015716 180 WADTE 184 (402)
Q Consensus 180 ~a~~~ 184 (402)
++.++
T Consensus 77 ~a~~~ 81 (90)
T 2dnp_A 77 LSTKG 81 (90)
T ss_dssp ESCCC
T ss_pred ECCCC
Confidence 98765
No 330
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.54 E-value=1e-14 Score=141.06 Aligned_cols=84 Identities=21% Similarity=0.384 Sum_probs=75.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCcc
Q 015716 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (402)
Q Consensus 11 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~ 90 (402)
....++|||+|||..+|+++|+++|++||.|+.|.|+.++.+++++|||||+|.+.++|++||+.||+.. +.| +.|.
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~-i~g--r~i~ 175 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKK-IDG--RRVL 175 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCE-ECC--EEEE
Confidence 3456899999999999999999999999999999999999899999999999999999999999997766 666 7888
Q ss_pred ccccCcc
Q 015716 91 VKYADGE 97 (402)
Q Consensus 91 ~~~~~~~ 97 (402)
|.++.+.
T Consensus 176 V~~a~~~ 182 (437)
T 3pgw_S 176 VDVERGR 182 (437)
T ss_pred EEEeCCC
Confidence 8887643
No 331
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.54 E-value=1.5e-14 Score=112.94 Aligned_cols=74 Identities=31% Similarity=0.583 Sum_probs=66.8
Q ss_pred ccceEEEcCCCCC-CcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEE
Q 015716 101 LEHKLFIGMLPKN-VSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (402)
Q Consensus 101 ~~~~l~v~nlp~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~ 179 (402)
..++|||+|||.+ +++++|+++|++||.|.+|.+ ++|||||+|.+.++|++|++.|||.. ++|+ .|.|.
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~-~~g~--~l~V~ 95 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-------HKGYAFVQYSNERHARAAVLGENGRV-LAGQ--TLDIN 95 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-------ETTEEEEECSSSHHHHHHHHHHTTCE-ETTE--ECCEE
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCE-ECCe--EEEEE
Confidence 3589999999999 999999999999999999998 48999999999999999999999987 6665 58899
Q ss_pred EcCCH
Q 015716 180 WADTE 184 (402)
Q Consensus 180 ~a~~~ 184 (402)
++..+
T Consensus 96 ~a~~~ 100 (110)
T 1wf1_A 96 MAGEP 100 (110)
T ss_dssp ESCCC
T ss_pred ECCCC
Confidence 98753
No 332
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.54 E-value=1.5e-15 Score=116.79 Aligned_cols=80 Identities=24% Similarity=0.298 Sum_probs=69.5
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEE
Q 015716 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (402)
Q Consensus 101 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~ 179 (402)
..++|||+|||.++++++|+++|++||.|.. .++.+. ++.++|||||+|.+.++|++|++ |||.. +.|+ .|.|.
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~-~~g~--~l~V~ 90 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLK-VFGN--EIKLE 90 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCC-BTTB--CCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcE-ECCc--EEEEE
Confidence 4679999999999999999999999999888 555553 68899999999999999999998 99987 6665 58999
Q ss_pred EcCCHH
Q 015716 180 WADTEK 185 (402)
Q Consensus 180 ~a~~~~ 185 (402)
++.++.
T Consensus 91 ~a~~~~ 96 (101)
T 1fj7_A 91 KPKGRD 96 (101)
T ss_dssp CCSCCC
T ss_pred EcCCCC
Confidence 887653
No 333
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.53 E-value=1.4e-14 Score=108.06 Aligned_cols=72 Identities=25% Similarity=0.415 Sum_probs=62.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhc----C-------CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCC
Q 015716 11 SEERVKLFVGQVPKHMTEAQLLAMFKEF----A-------LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNK 79 (402)
Q Consensus 11 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~----G-------~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~ 79 (402)
..+.++|||+|||+++++++|+++|++| | .|.++++.++ +|||||+|.+.++|++|+ .||+.
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~ 75 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGI 75 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCC
Confidence 3567899999999999999999999999 8 9999998755 689999999999999999 99776
Q ss_pred CCCCCCCCCcccc
Q 015716 80 KTLPGASSPLQVK 92 (402)
Q Consensus 80 ~~~~g~~~~~~~~ 92 (402)
. +.| +.+.++
T Consensus 76 ~-~~g--~~l~V~ 85 (87)
T 2hzc_A 76 I-FQG--QSLKIR 85 (87)
T ss_dssp E-ETT--EECEEE
T ss_pred E-ECC--eEEEEe
Confidence 6 666 666654
No 334
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.53 E-value=3.5e-14 Score=107.96 Aligned_cols=75 Identities=27% Similarity=0.497 Sum_probs=65.6
Q ss_pred cccceEEEcCCCC-CCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEE
Q 015716 100 RLEHKLFIGMLPK-NVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (402)
Q Consensus 100 ~~~~~l~v~nlp~-~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v 178 (402)
...++|||+|||. ++++++|+++|++||.|.++.+. +|||||+|.+.++|.+|++.|||.. +.|+. |.|
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~-~~g~~--l~V 77 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIECESQEM-NFGKK--LIL 77 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-------TTEEEEEESCHHHHHHHHHHHTCSS-CBTTT--BCE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCe-eCCcE--EEE
Confidence 3468999999998 99999999999999999999984 7899999999999999999999987 66664 677
Q ss_pred EEcCCH
Q 015716 179 KWADTE 184 (402)
Q Consensus 179 ~~a~~~ 184 (402)
.++..+
T Consensus 78 ~~a~~~ 83 (96)
T 2kvi_A 78 EVSSSN 83 (96)
T ss_dssp EEEECC
T ss_pred EEcCcC
Confidence 777554
No 335
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.53 E-value=1.8e-14 Score=111.11 Aligned_cols=74 Identities=28% Similarity=0.567 Sum_probs=67.1
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEEc
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~a 181 (402)
.++|||+|||.++++++|+++|++||.|.+|.++ ++||||+|.+.++|++|++.||+.. ++|+ .|.|.++
T Consensus 11 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~-~~g~--~l~v~~a 80 (103)
T 2dgu_A 11 VKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-------KDYAFIHFDERDGAVKAMEEMNGKD-LEGE--NIEIVFA 80 (103)
T ss_dssp CCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-------SSCEEEEESSHHHHHHHHHHHTTEE-ETTE--EEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEeCCHHHHHHHHHHHCCCc-cCCC--EEEEEEc
Confidence 6789999999999999999999999999999987 4599999999999999999999987 6665 6999999
Q ss_pred CCHH
Q 015716 182 DTEK 185 (402)
Q Consensus 182 ~~~~ 185 (402)
.++.
T Consensus 81 ~~~~ 84 (103)
T 2dgu_A 81 KPPD 84 (103)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 7654
No 336
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.53 E-value=1.5e-14 Score=108.18 Aligned_cols=75 Identities=24% Similarity=0.324 Sum_probs=67.0
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEE
Q 015716 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (402)
Q Consensus 101 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~ 180 (402)
..++|||+|||+++++++|+++|++| .|.++++. +++|||||+|.+.++|++|++.|||.. ++|+ .|.|.+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~-~~g~--~l~V~~ 74 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-----RNKRTAFVTLLNGEQAQNAIQMFHQYS-FRGK--DLIVQL 74 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-----GGGTEEEECCSCHHHHHHHHHHHTTEE-ETTE--EEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-----CCCcEEEEEECCHHHHHHHHHHhCCCe-ECCc--EEEEEE
Confidence 35789999999999999999999999 99999885 569999999999999999999999987 6665 589998
Q ss_pred cCCH
Q 015716 181 ADTE 184 (402)
Q Consensus 181 a~~~ 184 (402)
+..+
T Consensus 75 a~~~ 78 (88)
T 1wg1_A 75 QPTD 78 (88)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8653
No 337
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=3.2e-14 Score=108.83 Aligned_cols=75 Identities=27% Similarity=0.483 Sum_probs=67.2
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccC--CCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEE
Q 015716 100 RLEHKLFIGMLPKNVSEAEVSALFSIY--GTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLV 177 (402)
Q Consensus 100 ~~~~~l~v~nlp~~~t~~~l~~~f~~~--G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~ 177 (402)
...++|||+|||.++++++|+++|++| |.|.++.+. +|||||+|.+.++|.+|++.|||.. ++|+ .|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-------~g~afV~f~~~~~A~~A~~~l~g~~-~~g~--~l~ 82 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-------RDYAFVHFSNREDAVEAMKALNGKV-LDGS--PIE 82 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHSSEE-ETTE--EEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-------CCeEEEEeCCHHHHHHHHHHhCCCE-eCCc--EEE
Confidence 346899999999999999999999999 899999875 5799999999999999999999987 6664 699
Q ss_pred EEEcCCH
Q 015716 178 VKWADTE 184 (402)
Q Consensus 178 v~~a~~~ 184 (402)
|.++.++
T Consensus 83 v~~a~~~ 89 (99)
T 2cpd_A 83 VTLAKPV 89 (99)
T ss_dssp EECCCCC
T ss_pred EEECCCC
Confidence 9998765
No 338
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.52 E-value=1.5e-14 Score=114.86 Aligned_cols=80 Identities=13% Similarity=0.166 Sum_probs=67.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccE-EEEEeCCHHHHHHHHHHhcCCCCCCCCCCCcc
Q 015716 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGC-CFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (402)
Q Consensus 12 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~-afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~ 90 (402)
.....|||+||++.+|+++|+++|++||.|.+|+++.+ .+|| |||+|.+.++|++|++.|++..+ .+..+.|+
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i-~g~~~~Lr 99 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNI-YNACCTLR 99 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEE-ETTEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCee-cCCCcEEE
Confidence 44567889999999999999999999999999998764 2577 99999999999999999988875 44346788
Q ss_pred ccccCcc
Q 015716 91 VKYADGE 97 (402)
Q Consensus 91 ~~~~~~~ 97 (402)
+.+++..
T Consensus 100 I~~ak~~ 106 (130)
T 3zzy_A 100 IDFSKLT 106 (130)
T ss_dssp EEECSCS
T ss_pred EEecCCC
Confidence 8887654
No 339
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.52 E-value=2.4e-14 Score=112.71 Aligned_cols=76 Identities=16% Similarity=0.227 Sum_probs=65.2
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCce---eEE
Q 015716 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV---PLV 177 (402)
Q Consensus 101 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~---~l~ 177 (402)
..++|||+|||+++++++|+++|++||+|.+|.|+.+ |||||+|.+.++|++|++.|||.. ++|+.+ .|.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~-~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTK-FRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT------SEEEEEESSHHHHHHHHHHHTTCB-CCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC------CEEEEEECCHHHHHHHHHHhCCCE-ECCcEeeeEEEE
Confidence 4689999999999999999999999999999999875 899999999999999999999987 777642 256
Q ss_pred EEEcCC
Q 015716 178 VKWADT 183 (402)
Q Consensus 178 v~~a~~ 183 (402)
|..+..
T Consensus 88 v~~~~~ 93 (115)
T 3beg_B 88 VKVDGP 93 (115)
T ss_dssp EEECC-
T ss_pred eccCCC
Confidence 666654
No 340
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.52 E-value=3.3e-14 Score=112.79 Aligned_cols=79 Identities=23% Similarity=0.350 Sum_probs=68.1
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCC
Q 015716 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (402)
Q Consensus 9 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~ 88 (402)
......++|||+|| ++++++|+++|++||.|.+|++. +++|||||+|.+.++|++||+.|++.. +.| +.
T Consensus 34 ~~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~-~~g--~~ 102 (121)
T 2bz2_A 34 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQ-VES--VQ 102 (121)
T ss_dssp -CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCB-CSS--CB
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCE-ECC--eE
Confidence 34567899999996 79999999999999999999985 467899999999999999999998776 666 88
Q ss_pred ccccccCccc
Q 015716 89 LQVKYADGEL 98 (402)
Q Consensus 89 ~~~~~~~~~~ 98 (402)
|.|.++....
T Consensus 103 l~V~~a~~~~ 112 (121)
T 2bz2_A 103 LKVNIARKQP 112 (121)
T ss_dssp CEEEECCSSC
T ss_pred EEEEEeCCCC
Confidence 8888877553
No 341
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=5.1e-15 Score=110.71 Aligned_cols=78 Identities=24% Similarity=0.299 Sum_probs=63.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCccc
Q 015716 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 91 (402)
Q Consensus 12 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~~ 91 (402)
...++|||+|||.++++++|+++|++||+|.+|+++.+ ++|||||+|.+.++|++|+ +.. +....+.+.+
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~----~~~-~~~~g~~l~v 72 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLC----GED-LIIKGISVHI 72 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTT----TCE-EEETTEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHh----cCC-ceeCCEEEEE
Confidence 46799999999999999999999999999999999865 6799999999999998653 322 3223377888
Q ss_pred cccCcccc
Q 015716 92 KYADGELE 99 (402)
Q Consensus 92 ~~~~~~~~ 99 (402)
.++.++..
T Consensus 73 ~~a~~~~~ 80 (88)
T 1wf0_A 73 SNAEPKHN 80 (88)
T ss_dssp ECCCCCCC
T ss_pred EecCCCCC
Confidence 77765543
No 342
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.51 E-value=4.9e-14 Score=108.58 Aligned_cols=84 Identities=11% Similarity=0.048 Sum_probs=71.2
Q ss_pred CCCCCCeEEEcCCCC-----CCCHHHHHHHHHhcCCeeEEEEeeCCCC-CCcccEEEEEeCCHHHHHHHHHHhcCCCCCC
Q 015716 10 SSEERVKLFVGQVPK-----HMTEAQLLAMFKEFALVDEVNIIKDKTT-RASRGCCFVICPSRQEADKAVNACHNKKTLP 83 (402)
Q Consensus 10 ~~~~~~~l~V~nLp~-----~~t~~~L~~~f~~~G~v~~v~~~~~~~t-~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~ 83 (402)
...++++|+|+||.. +-++++|+++|++||.|.+|+|++++.+ ++++|||||+|.+.++|++|++.||+.. +.
T Consensus 4 ~~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~-~~ 82 (105)
T 2pe8_A 4 GKCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRY-FG 82 (105)
T ss_dssp GGSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCE-ET
T ss_pred CCCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCE-EC
Confidence 346789999999952 2378999999999999999999998654 6899999999999999999999997766 66
Q ss_pred CCCCCccccccCc
Q 015716 84 GASSPLQVKYADG 96 (402)
Q Consensus 84 g~~~~~~~~~~~~ 96 (402)
| +.|.+.++..
T Consensus 83 G--r~i~v~~a~~ 93 (105)
T 2pe8_A 83 G--RVVKACFYNL 93 (105)
T ss_dssp T--EECEEEECCH
T ss_pred C--cEEEEEEcCH
Confidence 6 8888887753
No 343
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.51 E-value=7.8e-15 Score=120.33 Aligned_cols=85 Identities=25% Similarity=0.410 Sum_probs=70.3
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCCeeEE------EEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCc
Q 015716 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDL------QILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSS 173 (402)
Q Consensus 100 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~------~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~ 173 (402)
...++|||+|||+++++++|+++|++||.|..+ .+....++.++|||||+|.+.++|.+|++.|||.. +.|+
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~-~~g~- 120 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYV-LFGK- 120 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBE-ETTE-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCE-eCCc-
Confidence 346899999999999999999999999998764 12222368899999999999999999999999987 6665
Q ss_pred eeEEEEEcCCHHHH
Q 015716 174 VPLVVKWADTEKER 187 (402)
Q Consensus 174 ~~l~v~~a~~~~~~ 187 (402)
.|.|.++.....+
T Consensus 121 -~l~V~~a~~~~~~ 133 (143)
T 3egn_A 121 -PMVVQFARSARPK 133 (143)
T ss_dssp -ECEEEECCCSCC-
T ss_pred -EEEEEECCCCCCc
Confidence 6899999765433
No 344
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.50 E-value=1.5e-14 Score=124.62 Aligned_cols=79 Identities=16% Similarity=0.277 Sum_probs=69.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCcccc
Q 015716 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVK 92 (402)
Q Consensus 13 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~~~ 92 (402)
..++|||+|||+++++++|+++|++||.|.+|+|+++.. ++++|||||+|.+.++|++|++.+ +. .+.| +.|.+.
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~-~~~kG~aFVeF~~~e~A~~A~~~~-~~-~~~G--r~l~V~ 182 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETP-GQ-KYKE--TDLLIL 182 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTT-CCEEEEEEEEESSHHHHHHHHHCT-TC-EETT--EECEEE
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCC-CCcccEEEEEECCHHHHHHHHHhC-CC-eECC--EEEEEE
Confidence 458999999999999999999999999999999999874 899999999999999999999876 44 4666 777777
Q ss_pred ccCc
Q 015716 93 YADG 96 (402)
Q Consensus 93 ~~~~ 96 (402)
+...
T Consensus 183 ~~~~ 186 (193)
T 2voo_A 183 FKDD 186 (193)
T ss_dssp ETTT
T ss_pred EhHH
Confidence 6543
No 345
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.50 E-value=1.8e-14 Score=112.14 Aligned_cols=79 Identities=15% Similarity=0.291 Sum_probs=67.1
Q ss_pred ceEEEcCC----CCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCC----HHH----HHHHHH--HHcCCc
Q 015716 103 HKLFIGML----PKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYET----KEQ----ALAALE--AINGKH 167 (402)
Q Consensus 103 ~~l~v~nl----p~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~----~~~----A~~A~~--~l~g~~ 167 (402)
.+|||+|| |+.+++++|+++|+.||+|.++.++.|+ +|+++|||||+|.+ .++ |.+|+. .+||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 57999999 9999999999999999999999999999 89999999999996 333 788888 789977
Q ss_pred ccCCCceeEEEEEcCCH
Q 015716 168 KMEGSSVPLVVKWADTE 184 (402)
Q Consensus 168 ~~~g~~~~l~v~~a~~~ 184 (402)
++|+. |+|.+-...
T Consensus 83 -I~Gr~--irV~ln~~g 96 (136)
T 2j8a_A 83 -IMGFK--FEVILNKHS 96 (136)
T ss_dssp -ETTEE--EEEEECCTT
T ss_pred -ecCcE--EEEEECccc
Confidence 77764 666665443
No 346
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=2e-14 Score=108.60 Aligned_cols=75 Identities=25% Similarity=0.456 Sum_probs=65.5
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCC-eeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcC-CcccCCCceeEEE
Q 015716 101 LEHKLFIGMLPKNVSEAEVSALFSIYGT-IKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING-KHKMEGSSVPLVV 178 (402)
Q Consensus 101 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~-v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g-~~~~~g~~~~l~v 178 (402)
..++|||+|||.++++++|+++|++||. |..+.+. ++|||||+|.+.++|++|++.||| .. ++|+ .|.|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~-~~g~--~l~v 77 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL------KSGYAFVDYPDQNWAIRAIETLSGKVE-LHGK--IMEV 77 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE------ETTEEEECCSCHHHHHHHHHHHTTTCE-ETTE--ECEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc------CCCEEEEEECCHHHHHHHHHHccCCee-ECCE--EEEE
Confidence 3678999999999999999999999999 6666663 489999999999999999999999 66 6665 6899
Q ss_pred EEcCCH
Q 015716 179 KWADTE 184 (402)
Q Consensus 179 ~~a~~~ 184 (402)
.++.++
T Consensus 78 ~~a~~~ 83 (93)
T 2cqh_A 78 DYSVSK 83 (93)
T ss_dssp EECCCC
T ss_pred EEccCc
Confidence 998765
No 347
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.50 E-value=1e-13 Score=119.34 Aligned_cols=80 Identities=16% Similarity=0.320 Sum_probs=71.4
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEE
Q 015716 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (402)
Q Consensus 101 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~ 180 (402)
..++|||+|||+++++++|+++|++||.|.+|+++++.++.++|||||+|.+.++|.+|+..++. . ++|+ .|.|.+
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~-~-~~Gr--~l~V~~ 183 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQ-K-YKET--DLLILF 183 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTC-E-ETTE--ECEEEE
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCC-e-ECCE--EEEEEE
Confidence 36899999999999999999999999999999999998899999999999999999999986654 4 7776 588888
Q ss_pred cCCH
Q 015716 181 ADTE 184 (402)
Q Consensus 181 a~~~ 184 (402)
+..-
T Consensus 184 ~~~y 187 (193)
T 2voo_A 184 KDDY 187 (193)
T ss_dssp TTTC
T ss_pred hHHH
Confidence 7653
No 348
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=9.1e-14 Score=105.85 Aligned_cols=75 Identities=29% Similarity=0.476 Sum_probs=66.5
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEE
Q 015716 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (402)
Q Consensus 100 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~ 179 (402)
...++|||+|| ++++++|+++|++||.|.+|.+. .++|||||+|.+.++|.+|++.|||.. +.|+ .|.|.
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~-~~g~--~l~v~ 82 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQ-VESV--QLKVN 82 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE-----TTTTEEEEEESSHHHHHHHHHHTTTEE-ETTE--EEEEE
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec-----CCCCEEEEEECCHHHHHHHHHHhCCCe-ECCe--EEEEE
Confidence 34689999996 89999999999999999999995 458999999999999999999999987 5664 69999
Q ss_pred EcCCH
Q 015716 180 WADTE 184 (402)
Q Consensus 180 ~a~~~ 184 (402)
|+.++
T Consensus 83 ~a~~~ 87 (97)
T 1x5p_A 83 IARKQ 87 (97)
T ss_dssp CCSSC
T ss_pred ECCCC
Confidence 98765
No 349
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=6.9e-14 Score=102.89 Aligned_cols=70 Identities=17% Similarity=0.327 Sum_probs=60.8
Q ss_pred eEEEcCCCCCCcHHH----HHHhhccC-CCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEE
Q 015716 104 KLFIGMLPKNVSEAE----VSALFSIY-GTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (402)
Q Consensus 104 ~l~v~nlp~~~t~~~----l~~~f~~~-G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v 178 (402)
.|||+|||+++++++ |+++|++| |+|.+| ++ |+|||+|.+.++|.+|++.|+|.. +.|+ +|+|
T Consensus 11 ~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------tg---G~AfV~F~~~esA~~A~~~l~G~~-l~gr--~i~v 78 (96)
T 2diu_A 11 LLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------TG---CSAILRFINQDSAERAQKRMENED-VFGN--RIIV 78 (96)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------CT---TCEEEEESSHHHHHHHHHHHTTCC-SSSS--CCEE
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------ec---CEEEEEECCHHHHHHHHHHhcCCc-cCCc--eEEE
Confidence 499999999999988 55899999 499998 22 999999999999999999999998 5555 5899
Q ss_pred EEcCCHH
Q 015716 179 KWADTEK 185 (402)
Q Consensus 179 ~~a~~~~ 185 (402)
.+|..+.
T Consensus 79 ~~A~~~s 85 (96)
T 2diu_A 79 SFTPKNR 85 (96)
T ss_dssp ESSCCSC
T ss_pred EecCCCc
Confidence 9987653
No 350
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.48 E-value=1.5e-13 Score=105.78 Aligned_cols=81 Identities=17% Similarity=0.245 Sum_probs=69.5
Q ss_pred ccceEEEcCCCC-----CCcHHHHHHhhccCCCeeEEEEeeCC--CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCc
Q 015716 101 LEHKLFIGMLPK-----NVSEAEVSALFSIYGTIKDLQILRGS--QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSS 173 (402)
Q Consensus 101 ~~~~l~v~nlp~-----~~t~~~l~~~f~~~G~v~~~~i~~~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~ 173 (402)
..++|+|.|+.. +-++++|+++|++||.|.+|.|++++ ++.++|||||+|.+.++|.+|++.|||+. ++|+
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~-~~Gr- 84 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRY-FGGR- 84 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCE-ETTE-
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCE-ECCc-
Confidence 367899999963 23789999999999999999999886 36889999999999999999999999988 6765
Q ss_pred eeEEEEEcCCH
Q 015716 174 VPLVVKWADTE 184 (402)
Q Consensus 174 ~~l~v~~a~~~ 184 (402)
.|.|.++...
T Consensus 85 -~i~v~~a~~~ 94 (105)
T 2pe8_A 85 -VVKACFYNLD 94 (105)
T ss_dssp -ECEEEECCHH
T ss_pred -EEEEEEcCHH
Confidence 6899998754
No 351
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=6.6e-14 Score=106.38 Aligned_cols=78 Identities=26% Similarity=0.389 Sum_probs=68.0
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCCeeEEE-EeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEE
Q 015716 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ-ILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (402)
Q Consensus 101 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~-i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~ 179 (402)
..++|||+|||+++++++|+++|++||.|.+++ ++.++. .+.|||+|.+.++|++|++.|||.. ++|+ .|.|.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~---~~~afV~f~~~~~a~~Ai~~l~g~~-~~g~--~l~V~ 87 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSE---TAVVNVTYSSKDQARQALDKLNGFQ-LENF--TLKVA 87 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSS---SEEEEEEESSHHHHHHHHHHHTTCB-CSSC--BCEEE
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC---CCEEEEEECCHHHHHHHHHHhCCCE-ECCc--EEEEE
Confidence 367899999999999999999999999999994 777643 2349999999999999999999987 6665 58999
Q ss_pred EcCCH
Q 015716 180 WADTE 184 (402)
Q Consensus 180 ~a~~~ 184 (402)
++.++
T Consensus 88 ~a~~~ 92 (96)
T 2e44_A 88 YIPDE 92 (96)
T ss_dssp ECCCC
T ss_pred EcCcc
Confidence 98765
No 352
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.48 E-value=7.1e-14 Score=123.07 Aligned_cols=81 Identities=25% Similarity=0.453 Sum_probs=68.8
Q ss_pred CCCCCeEEEcCCCCCC---------CHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCC
Q 015716 11 SEERVKLFVGQVPKHM---------TEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKT 81 (402)
Q Consensus 11 ~~~~~~l~V~nLp~~~---------t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~ 81 (402)
....++|||+||+..+ ++++|+++|++||+|++|+|+. ++|||||+|.+.++|+.|++.|++..+
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4578999999999998 7999999999999999999985 468999999999999999999988875
Q ss_pred C-----------CCCCCCccccccCcccc
Q 015716 82 L-----------PGASSPLQVKYADGELE 99 (402)
Q Consensus 82 ~-----------~g~~~~~~~~~~~~~~~ 99 (402)
+ .| +.|.|+|+..+..
T Consensus 205 ~~~~~~e~~~~~~g--r~L~V~wA~~~pn 231 (240)
T 3u1l_A 205 LLPSDKEWDDRREG--TGLLVKWANEDPD 231 (240)
T ss_dssp CCTTSTTGGGGGGS--CCCEEEECC----
T ss_pred eccccccccccCCC--CEEEEEEccCCCC
Confidence 3 44 7889998875543
No 353
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.47 E-value=7.4e-14 Score=122.94 Aligned_cols=85 Identities=27% Similarity=0.558 Sum_probs=68.9
Q ss_pred ccccceEEEcCCCCCC---------cHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCccc
Q 015716 99 ERLEHKLFIGMLPKNV---------SEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKM 169 (402)
Q Consensus 99 ~~~~~~l~v~nlp~~~---------t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 169 (402)
....++|||+||+.++ ++++|+++|++||+|++|+|+.+ +|||||+|.+.++|+.|++.|+|..++
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~-----kG~AFV~F~~~~~Ae~A~~am~g~~l~ 205 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES-----KNCGFVKFKYQANAEFAKEAMSNQTLL 205 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG-----GTEEEEEESSHHHHHHHHHHHTTCCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC-----CCEEEEEeCCHHHHHHHHHHhCCCEEe
Confidence 3447899999999998 79999999999999999999864 899999999999999999999998852
Q ss_pred -----------CCCceeEEEEEcCCHHHHHHH
Q 015716 170 -----------EGSSVPLVVKWADTEKERQAR 190 (402)
Q Consensus 170 -----------~g~~~~l~v~~a~~~~~~~~~ 190 (402)
.|+ .|.|.||..+.....+
T Consensus 206 ~~~~~e~~~~~~gr--~L~V~wA~~~pnp~~~ 235 (240)
T 3u1l_A 206 LPSDKEWDDRREGT--GLLVKWANEDPDPAAQ 235 (240)
T ss_dssp CTTSTTGGGGGGSC--CCEEEECC--------
T ss_pred ccccccccccCCCC--EEEEEEccCCCCHHHh
Confidence 444 6999999877655443
No 354
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=8.5e-14 Score=109.36 Aligned_cols=63 Identities=27% Similarity=0.478 Sum_probs=57.7
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-C---CCcceEEEEEeCCHHHHHHHHHHHc
Q 015716 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-Q---QTSKGCAFLKYETKEQALAALEAIN 164 (402)
Q Consensus 101 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~---~~~~g~afV~f~~~~~A~~A~~~l~ 164 (402)
..++|||+|||+++++++|+++|++||.|. +.++.+. + |+++|||||+|.+.++|++|++.|+
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~ 73 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL 73 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh
Confidence 368999999999999999999999999999 7787765 3 6899999999999999999999984
No 355
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=7.8e-14 Score=105.55 Aligned_cols=74 Identities=18% Similarity=0.320 Sum_probs=62.8
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC-CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEE
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~ 180 (402)
.++|||+|||+++++++|+++|++||.|.+| +.+. ++. ||||+|.+.++|.+|++ |||.. ++|+ .|.|.+
T Consensus 8 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~-~~g~--~l~V~~ 78 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHS-LGGH--RLRVRP 78 (94)
T ss_dssp CCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCE-ETTE--ECCCBC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeE-ECCE--EEEEEE
Confidence 5799999999999999999999999999987 3333 443 99999999999999999 99987 6765 577777
Q ss_pred cCCH
Q 015716 181 ADTE 184 (402)
Q Consensus 181 a~~~ 184 (402)
+..+
T Consensus 79 a~~~ 82 (94)
T 2e5g_A 79 REQK 82 (94)
T ss_dssp SCCS
T ss_pred CCcC
Confidence 6543
No 356
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.45 E-value=1.5e-13 Score=102.27 Aligned_cols=70 Identities=24% Similarity=0.540 Sum_probs=63.0
Q ss_pred ccceEEEcCCCCCCcHHHHHHhhccC----C-------CeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCccc
Q 015716 101 LEHKLFIGMLPKNVSEAEVSALFSIY----G-------TIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKM 169 (402)
Q Consensus 101 ~~~~l~v~nlp~~~t~~~l~~~f~~~----G-------~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 169 (402)
..++|||+|||.++++++|+++|++| | .|.++.+.++ +|||||+|.+.++|.+|+ .|||.. +
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-----kg~afV~f~~~~~a~~A~-~l~g~~-~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAM-AFDGII-F 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-----SSEEEEEESSHHHHHHHG-GGTTCE-E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-----CcEEEEEcCCHHHHHHHH-hcCCCE-E
Confidence 46899999999999999999999999 8 8999999865 899999999999999999 999987 6
Q ss_pred CCCceeEEEE
Q 015716 170 EGSSVPLVVK 179 (402)
Q Consensus 170 ~g~~~~l~v~ 179 (402)
+|+ .|.|.
T Consensus 78 ~g~--~l~V~ 85 (87)
T 2hzc_A 78 QGQ--SLKIR 85 (87)
T ss_dssp TTE--ECEEE
T ss_pred CCe--EEEEe
Confidence 765 46665
No 357
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1e-13 Score=103.50 Aligned_cols=74 Identities=20% Similarity=0.397 Sum_probs=62.9
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEEc
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~a 181 (402)
.++|||+|||.++++++|+++|++||.|.+|+++++ ++|||||+|.+.++|++| ++.. +....+.|.|.++
T Consensus 5 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~~----~~~~-~~~~g~~l~v~~a 75 (88)
T 1wf0_A 5 SSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP----FRAFAFVTFADDQIAQSL----CGED-LIIKGISVHISNA 75 (88)
T ss_dssp CCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS----CCSCCEEECSCHHHHHHT----TTCE-EEETTEEEEEECC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC----CCCEEEEEECCHHHHHHH----hcCC-ceeCCEEEEEEec
Confidence 589999999999999999999999999999999875 689999999999999754 4544 3334457899988
Q ss_pred CCH
Q 015716 182 DTE 184 (402)
Q Consensus 182 ~~~ 184 (402)
.++
T Consensus 76 ~~~ 78 (88)
T 1wf0_A 76 EPK 78 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 765
No 358
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.44 E-value=3e-13 Score=107.21 Aligned_cols=77 Identities=29% Similarity=0.452 Sum_probs=67.5
Q ss_pred cccceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEE
Q 015716 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (402)
Q Consensus 100 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~ 179 (402)
...++|||+|+ ++++++|+++|++||.|.+|.+. .++|||||+|.+.++|.+|++.|||.. ++|+ .|.|.
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-----~~kg~aFV~f~~~~~A~~Ai~~lng~~-~~g~--~l~V~ 106 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQ-VESV--QLKVN 106 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCB-CSSC--BCEEE
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-----CCCCEEEEEECCHHHHHHHHHHhCCCE-ECCe--EEEEE
Confidence 34689999996 69999999999999999999996 358999999999999999999999987 6665 58999
Q ss_pred EcCCHHH
Q 015716 180 WADTEKE 186 (402)
Q Consensus 180 ~a~~~~~ 186 (402)
|+..+..
T Consensus 107 ~a~~~~~ 113 (121)
T 2bz2_A 107 IARKQPM 113 (121)
T ss_dssp ECCSSCC
T ss_pred EeCCCCC
Confidence 9887643
No 359
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=6.1e-13 Score=104.05 Aligned_cols=85 Identities=14% Similarity=0.202 Sum_probs=69.5
Q ss_pred ccccCCCCCCeEEEcCCCCCCC-----------HHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHH
Q 015716 6 KEKKSSEERVKLFVGQVPKHMT-----------EAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74 (402)
Q Consensus 6 ~~~~~~~~~~~l~V~nLp~~~t-----------~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~ 74 (402)
+....+.+.++|+|+||....+ +++|+++|++||.|.+|.| .++ .++|||||+|.+.++|++|++
T Consensus 7 ~~~~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~ 82 (112)
T 2dit_A 7 GGPSRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQ 82 (112)
T ss_dssp SCCCCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHH
T ss_pred CCCCCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHH
Confidence 3445677899999999944332 6899999999999999965 554 379999999999999999999
Q ss_pred HhcCCCCCCCCCCCccccccCcc
Q 015716 75 ACHNKKTLPGASSPLQVKYADGE 97 (402)
Q Consensus 75 ~l~~~~~~~g~~~~~~~~~~~~~ 97 (402)
.||+.. +.| +.|.+.++++.
T Consensus 83 ~lng~~-~~g--r~l~v~~a~~~ 102 (112)
T 2dit_A 83 TLDGRW-FGG--RQITAQAWDGT 102 (112)
T ss_dssp HSTTCE-ETT--EECEEEECCSC
T ss_pred HcCCCE-ECC--cEEEEEEeCCC
Confidence 998766 566 88888887654
No 360
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.35 E-value=9.1e-13 Score=101.47 Aligned_cols=82 Identities=18% Similarity=0.254 Sum_probs=68.6
Q ss_pred CCCCeEEEcCC--CCCCC--------HHHHHHHHHhcCCeeEEEEeeCCCC--CCcccEEEEEeCCHHHHHHHHHHhcCC
Q 015716 12 EERVKLFVGQV--PKHMT--------EAQLLAMFKEFALVDEVNIIKDKTT--RASRGCCFVICPSRQEADKAVNACHNK 79 (402)
Q Consensus 12 ~~~~~l~V~nL--p~~~t--------~~~L~~~f~~~G~v~~v~~~~~~~t--~~~~g~afV~F~~~~~a~~ai~~l~~~ 79 (402)
.+++.|.++|+ |.+.. ++||++.|++||+|++|+|++++.+ ++++|+|||+|.+.++|++|++.||+.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 46788999998 44443 3699999999999999999998754 468999999999999999999999776
Q ss_pred CCCCCCCCCccccccCc
Q 015716 80 KTLPGASSPLQVKYADG 96 (402)
Q Consensus 80 ~~~~g~~~~~~~~~~~~ 96 (402)
. +.| +.|.+.+.+.
T Consensus 83 ~-f~G--R~i~v~~~~~ 96 (105)
T 3v4m_A 83 K-FAN--RVVVTKYCDP 96 (105)
T ss_dssp E-ETT--EECEEEEECH
T ss_pred E-eCC--CEEEEEEeCH
Confidence 6 666 8888877653
No 361
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.35 E-value=1.3e-12 Score=121.30 Aligned_cols=86 Identities=16% Similarity=0.249 Sum_probs=68.7
Q ss_pred cccccccCCCCCCeEEEcC--CCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCC
Q 015716 3 ESKKEKKSSEERVKLFVGQ--VPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKK 80 (402)
Q Consensus 3 ~~~~~~~~~~~~~~l~V~n--Lp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~ 80 (402)
++..-+-...++.+|||+| |+.++||++|+++|++||+|.+|.+.. +||||||+|.+.++|++||+.||+..
T Consensus 7 ~~~~v~~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~ 80 (345)
T 3tht_A 7 RHEGIETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKE 80 (345)
T ss_dssp TTTTCCCCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCE
T ss_pred hcCCceecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCc
Confidence 3444455678889999999 588999999999999999999987743 46899999999999999999999887
Q ss_pred CCCC--CCCCcccccc
Q 015716 81 TLPG--ASSPLQVKYA 94 (402)
Q Consensus 81 ~~~g--~~~~~~~~~~ 94 (402)
++.. ....+.+.+.
T Consensus 81 ~~~~~g~~~~ly~~~~ 96 (345)
T 3tht_A 81 VVDDLGQKITLYLNFV 96 (345)
T ss_dssp EECTTSCEEECEEEEC
T ss_pred cccccCCceEEEEEEe
Confidence 6432 2224555554
No 362
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.35 E-value=3.4e-13 Score=103.78 Aligned_cols=72 Identities=19% Similarity=0.412 Sum_probs=60.2
Q ss_pred EcCCCCCCcHHHHHHhh------------ccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCce
Q 015716 107 IGMLPKNVSEAEVSALF------------SIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 174 (402)
Q Consensus 107 v~nlp~~~t~~~l~~~f------------~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~ 174 (402)
+.+|+..+++++|++.| ++||.|.+|.|+++.+++++|||||+|.+.++|++|++.|||+. ++|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~-~~Gr-- 96 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRW-FNGQ-- 96 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCE-ETTE--
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCE-ECCE--
Confidence 45566666776666555 99999999999998888999999999999999999999999987 7775
Q ss_pred eEEEEEc
Q 015716 175 PLVVKWA 181 (402)
Q Consensus 175 ~l~v~~a 181 (402)
.|.|.|+
T Consensus 97 ~i~v~~s 103 (104)
T 1jmt_A 97 PIHAELS 103 (104)
T ss_dssp ECCEEEC
T ss_pred EEEEEEc
Confidence 5777765
No 363
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.35 E-value=1.5e-12 Score=100.26 Aligned_cols=81 Identities=20% Similarity=0.377 Sum_probs=67.4
Q ss_pred cceEEEcCC--CCCC--------cHHHHHHhhccCCCeeEEEEeeCCC---CCcceEEEEEeCCHHHHHHHHHHHcCCcc
Q 015716 102 EHKLFIGML--PKNV--------SEAEVSALFSIYGTIKDLQILRGSQ---QTSKGCAFLKYETKEQALAALEAINGKHK 168 (402)
Q Consensus 102 ~~~l~v~nl--p~~~--------t~~~l~~~f~~~G~v~~~~i~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 168 (402)
++.|.+.|+ +.++ .+++|+++|++||.|.+|.|+++.. +.++|++||+|.+.++|.+|++.|||+.
T Consensus 5 s~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~- 83 (105)
T 3v4m_A 5 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK- 83 (105)
T ss_dssp CSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE-
T ss_pred CeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE-
Confidence 567888887 3333 3478999999999999999998874 3679999999999999999999999987
Q ss_pred cCCCceeEEEEEcCCHH
Q 015716 169 MEGSSVPLVVKWADTEK 185 (402)
Q Consensus 169 ~~g~~~~l~v~~a~~~~ 185 (402)
++|+ .|.|.++....
T Consensus 84 f~GR--~i~v~~~~~~~ 98 (105)
T 3v4m_A 84 FANR--VVVTKYCDPDS 98 (105)
T ss_dssp ETTE--ECEEEEECHHH
T ss_pred eCCC--EEEEEEeCHHH
Confidence 6775 58899887553
No 364
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.34 E-value=1.2e-12 Score=102.86 Aligned_cols=81 Identities=21% Similarity=0.285 Sum_probs=68.2
Q ss_pred CCCCeEEEcCC--CCCC---CHHHHHHHHHhcCCeeEEEEeeCCC----CCCcccEEEEEeCCHHHHHHHHHHhcCCCCC
Q 015716 12 EERVKLFVGQV--PKHM---TEAQLLAMFKEFALVDEVNIIKDKT----TRASRGCCFVICPSRQEADKAVNACHNKKTL 82 (402)
Q Consensus 12 ~~~~~l~V~nL--p~~~---t~~~L~~~f~~~G~v~~v~~~~~~~----t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~ 82 (402)
.++++|+++|+ |.++ .++||++.|++||+|.+|+|++++. +++++|++||+|.+.++|++|++.||+.. +
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~-f 96 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRW-F 96 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCE-E
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCE-E
Confidence 47899999999 3222 3689999999999999999999864 45788999999999999999999997765 6
Q ss_pred CCCCCCccccccC
Q 015716 83 PGASSPLQVKYAD 95 (402)
Q Consensus 83 ~g~~~~~~~~~~~ 95 (402)
.| +.|.+.+..
T Consensus 97 ~G--R~i~v~~~~ 107 (118)
T 3ue2_A 97 AG--RKVVAEVYD 107 (118)
T ss_dssp TT--EECEEEEEC
T ss_pred CC--cEEEEEEcC
Confidence 77 888877654
No 365
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.33 E-value=3.9e-13 Score=103.41 Aligned_cols=72 Identities=17% Similarity=0.364 Sum_probs=59.4
Q ss_pred EcCCCCCCCHHHHHHHH------------HhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCC
Q 015716 19 VGQVPKHMTEAQLLAMF------------KEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (402)
Q Consensus 19 V~nLp~~~t~~~L~~~f------------~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~ 86 (402)
+.|||..+++++|+++| ++||+|.+|+|++++. ++++|||||+|.+.++|++|++.||+.. +.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~-~~G-- 95 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRW-FNG-- 95 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCE-ETT--
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCE-ECC--
Confidence 45666667777777666 9999999999999875 7899999999999999999999997766 666
Q ss_pred CCcccccc
Q 015716 87 SPLQVKYA 94 (402)
Q Consensus 87 ~~~~~~~~ 94 (402)
+.|.+.++
T Consensus 96 r~i~v~~s 103 (104)
T 1jmt_A 96 QPIHAELS 103 (104)
T ss_dssp EECCEEEC
T ss_pred EEEEEEEc
Confidence 77776653
No 366
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.32 E-value=2.7e-12 Score=119.08 Aligned_cols=78 Identities=22% Similarity=0.407 Sum_probs=67.3
Q ss_pred cccceEEEcC--CCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccC--CCcee
Q 015716 100 RLEHKLFIGM--LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKME--GSSVP 175 (402)
Q Consensus 100 ~~~~~l~v~n--lp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~--g~~~~ 175 (402)
...++|||+| |++.+|+++|+++|++||+|.+|.+.+ +||||||+|.+.++|++|++.|||+.+++ |+...
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ 90 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 90 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceE
Confidence 3367999999 578999999999999999999988764 48999999999999999999999998753 45556
Q ss_pred EEEEEcC
Q 015716 176 LVVKWAD 182 (402)
Q Consensus 176 l~v~~a~ 182 (402)
|++.+++
T Consensus 91 ly~~~~~ 97 (345)
T 3tht_A 91 LYLNFVE 97 (345)
T ss_dssp CEEEECS
T ss_pred EEEEEee
Confidence 8888874
No 367
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=5.6e-12 Score=98.50 Aligned_cols=78 Identities=17% Similarity=0.296 Sum_probs=65.2
Q ss_pred ccceEEEcCCCCCCc-----------HHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCccc
Q 015716 101 LEHKLFIGMLPKNVS-----------EAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKM 169 (402)
Q Consensus 101 ~~~~l~v~nlp~~~t-----------~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 169 (402)
..++|+|.||..... +++|+++|++||.|.+|.| .+. .++|||||+|.+.++|.+|++.|||.. +
T Consensus 14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~--~~~G~afV~f~~~~~A~~Ai~~lng~~-~ 89 (112)
T 2dit_A 14 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR--HPDGVASVSFRDPEEADYCIQTLDGRW-F 89 (112)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT--CTTCEEEEECSCHHHHHHHHHHSTTCE-E
T ss_pred CceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC--CCCEEEEEEECCHHHHHHHHHHcCCCE-E
Confidence 368999999954432 5899999999999999966 443 379999999999999999999999987 6
Q ss_pred CCCceeEEEEEcCCH
Q 015716 170 EGSSVPLVVKWADTE 184 (402)
Q Consensus 170 ~g~~~~l~v~~a~~~ 184 (402)
+|+ .|.|.++.++
T Consensus 90 ~gr--~l~v~~a~~~ 102 (112)
T 2dit_A 90 GGR--QITAQAWDGT 102 (112)
T ss_dssp TTE--ECEEEECCSC
T ss_pred CCc--EEEEEEeCCC
Confidence 665 6899998764
No 368
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=1.1e-11 Score=94.25 Aligned_cols=77 Identities=18% Similarity=0.240 Sum_probs=62.7
Q ss_pred CCCCeEEEcCCC-------CCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCC
Q 015716 12 EERVKLFVGQVP-------KHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (402)
Q Consensus 12 ~~~~~l~V~nLp-------~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g 84 (402)
....+|.|.-.. .++++++|+++|++||.|.+|.|+ ++++|||||+|.+.++|++||+.+++ +.+
T Consensus 8 ~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~---~~g 79 (100)
T 2d9o_A 8 QGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG---LVD 79 (100)
T ss_dssp CSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB---CSS
T ss_pred CccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC---CCC
Confidence 345677777654 458999999999999999999997 36889999999999999999998543 334
Q ss_pred CCCCccccccCccc
Q 015716 85 ASSPLQVKYADGEL 98 (402)
Q Consensus 85 ~~~~~~~~~~~~~~ 98 (402)
++|.|.|+....
T Consensus 80 --~~l~V~~a~~~~ 91 (100)
T 2d9o_A 80 --NPLKISWLEGQP 91 (100)
T ss_dssp --SBCEEECSSCCC
T ss_pred --CeEEEEEccCCC
Confidence 788888876554
No 369
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.28 E-value=7.7e-12 Score=98.15 Aligned_cols=81 Identities=19% Similarity=0.300 Sum_probs=67.7
Q ss_pred ccceEEEcCCCC--C---CcHHHHHHhhccCCCeeEEEEeeCCC-----CCcceEEEEEeCCHHHHHHHHHHHcCCcccC
Q 015716 101 LEHKLFIGMLPK--N---VSEAEVSALFSIYGTIKDLQILRGSQ-----QTSKGCAFLKYETKEQALAALEAINGKHKME 170 (402)
Q Consensus 101 ~~~~l~v~nlp~--~---~t~~~l~~~f~~~G~v~~~~i~~~~~-----~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~ 170 (402)
.+++|++.|+-. + --+++|++.|++||.|.+|.|+++.. +.++|++||+|.+.++|.+|++.|||+. ++
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~-f~ 97 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRW-FA 97 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCE-ET
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCE-EC
Confidence 367899999842 2 24689999999999999999998753 4678999999999999999999999987 77
Q ss_pred CCceeEEEEEcCCH
Q 015716 171 GSSVPLVVKWADTE 184 (402)
Q Consensus 171 g~~~~l~v~~a~~~ 184 (402)
|+ .|.|.++...
T Consensus 98 GR--~i~v~~~~~~ 109 (118)
T 3ue2_A 98 GR--KVVAEVYDQE 109 (118)
T ss_dssp TE--ECEEEEECHH
T ss_pred Cc--EEEEEEcChH
Confidence 75 5888888654
No 370
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=2.4e-11 Score=92.23 Aligned_cols=64 Identities=22% Similarity=0.411 Sum_probs=55.1
Q ss_pred CCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEEcCCH
Q 015716 112 KNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 184 (402)
Q Consensus 112 ~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~a~~~ 184 (402)
..+++++|+++|++||.|.+|.|+ ++++|||||+|.+.++|.+|++.+++ +.++ .|.|.|+..+
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~----~~~rGfaFVeF~~~~~A~~Ai~~~~~---~~g~--~l~V~~a~~~ 90 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS----SKKPGTAVVEFATVKAAELAVQNEVG---LVDN--PLKISWLEGQ 90 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE----SSSSSEEEEEESCHHHHHHHHHTCCB---CSSS--BCEEECSSCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc----cCCCCEEEEEECCHHHHHHHHHhcCC---CCCC--eEEEEEccCC
Confidence 578999999999999999999998 35799999999999999999998655 3344 5899998765
No 371
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.11 E-value=1.2e-10 Score=90.61 Aligned_cols=78 Identities=14% Similarity=0.252 Sum_probs=62.7
Q ss_pred cceEEEcCCCCCC----------cHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCC
Q 015716 102 EHKLFIGMLPKNV----------SEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEG 171 (402)
Q Consensus 102 ~~~l~v~nlp~~~----------t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g 171 (402)
.+.|.+.|+=..- -+++|+++|++||.|.+|.|.++. ++|++||+|.+.++|.+|++.|||+. ++|
T Consensus 7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~---~~G~~fV~f~~~e~A~~Ai~~lnG~~-f~G 82 (114)
T 3s6e_A 7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS---AQGNVYVKCPSIAAAIAAVNALHGRW-FAG 82 (114)
T ss_dssp CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC---TTCCEEEECSSHHHHHHHHHHHTTCE-ETT
T ss_pred CcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC---CcEEEEEEECCHHHHHHHHHHhCCCE-ECC
Confidence 4567777763211 246799999999999999997763 48999999999999999999999987 777
Q ss_pred CceeEEEEEcCCHH
Q 015716 172 SSVPLVVKWADTEK 185 (402)
Q Consensus 172 ~~~~l~v~~a~~~~ 185 (402)
+ .|.|.++....
T Consensus 83 R--~i~v~~~~~~~ 94 (114)
T 3s6e_A 83 K--MITAAYVPLPT 94 (114)
T ss_dssp E--ECEEEEECHHH
T ss_pred E--EEEEEEEcHHH
Confidence 5 58899986543
No 372
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.09 E-value=1.9e-10 Score=89.56 Aligned_cols=80 Identities=10% Similarity=0.123 Sum_probs=65.4
Q ss_pred cCCCCCCeEEEcCCCCC-CCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCC-HHHHHHHHHHhcCCC-CCCCC
Q 015716 9 KSSEERVKLFVGQVPKH-MTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPS-RQEADKAVNACHNKK-TLPGA 85 (402)
Q Consensus 9 ~~~~~~~~l~V~nLp~~-~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~-~~~a~~ai~~l~~~~-~~~g~ 85 (402)
-.-..++.|+|+||+.+ +++++|+++|++||+|..|.+.++.. .|||+|.+ .++|.+|++.|+... .+.+
T Consensus 13 ~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g- 85 (121)
T 1owx_A 13 LEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRN- 85 (121)
T ss_dssp CSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTS-
T ss_pred ccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeC-
Confidence 34567899999999999 99999999999999999999998875 59999999 899999999986443 3444
Q ss_pred CCCccccccCc
Q 015716 86 SSPLQVKYADG 96 (402)
Q Consensus 86 ~~~~~~~~~~~ 96 (402)
..+.+.....
T Consensus 86 -~~~~~evL~G 95 (121)
T 1owx_A 86 -KEVTWEVLEG 95 (121)
T ss_dssp -SSEEEEECCH
T ss_pred -cEEEEEECCC
Confidence 4555544443
No 373
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.05 E-value=3.8e-10 Score=87.83 Aligned_cols=77 Identities=21% Similarity=0.322 Sum_probs=61.8
Q ss_pred CCCCeEEEcCC--CCCC--------CHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCC
Q 015716 12 EERVKLFVGQV--PKHM--------TEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKT 81 (402)
Q Consensus 12 ~~~~~l~V~nL--p~~~--------t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~ 81 (402)
.+++.|.++|+ |.+. -++||++.|++||.|++|.|.++. .+|+|||+|.+.++|++|++.||+..
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~- 79 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRW- 79 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCE-
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCE-
Confidence 46778999998 2221 135889999999999999986653 58999999999999999999997765
Q ss_pred CCCCCCCccccccC
Q 015716 82 LPGASSPLQVKYAD 95 (402)
Q Consensus 82 ~~g~~~~~~~~~~~ 95 (402)
+.| +.|.+.+..
T Consensus 80 f~G--R~i~v~~~~ 91 (114)
T 3s6e_A 80 FAG--KMITAAYVP 91 (114)
T ss_dssp ETT--EECEEEEEC
T ss_pred ECC--EEEEEEEEc
Confidence 677 788777654
No 374
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.05 E-value=1.1e-09 Score=85.30 Aligned_cols=77 Identities=18% Similarity=0.281 Sum_probs=63.0
Q ss_pred ccceEEEcCCCCC-CcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCC-HHHHHHHHHHHc-CCcccCCCceeEE
Q 015716 101 LEHKLFIGMLPKN-VSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYET-KEQALAALEAIN-GKHKMEGSSVPLV 177 (402)
Q Consensus 101 ~~~~l~v~nlp~~-~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~-~~~A~~A~~~l~-g~~~~~g~~~~l~ 177 (402)
..+.|||+||+.+ +++++|+++|++||+|.+|++.++.. .|||+|.+ .++|.+|++.+| +...+.+.. +.
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~-----tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~--~~ 89 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK-----EGIILFKEKAKEALGKAKDANNGNLQLRNKE--VT 89 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS-----EEEEEESSCHHHHHHHHHHTTTSCBCTTSSS--EE
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC-----EEEEEECCChHHHHHHHHHhhcCCcEEeCcE--EE
Confidence 3789999999999 99999999999999999999998743 59999999 899999999995 333366654 45
Q ss_pred EEEcCCH
Q 015716 178 VKWADTE 184 (402)
Q Consensus 178 v~~a~~~ 184 (402)
+....-+
T Consensus 90 ~evL~Ge 96 (121)
T 1owx_A 90 WEVLEGE 96 (121)
T ss_dssp EEECCHH
T ss_pred EEECCCH
Confidence 5444433
No 375
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.84 E-value=3.5e-09 Score=77.12 Aligned_cols=75 Identities=16% Similarity=0.237 Sum_probs=61.7
Q ss_pred CCCCCeEEEcCCC----CCCCH----HHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCC
Q 015716 11 SEERVKLFVGQVP----KHMTE----AQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTL 82 (402)
Q Consensus 11 ~~~~~~l~V~nLp----~~~t~----~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~ 82 (402)
.++..||+|.-.+ .++-+ .+|.+.|.+||.|..++++.|+ +||+|.+.++|.+||+ |++.. +
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~-v 73 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKE-L 73 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCE-E
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeE-e
Confidence 4577889998877 23434 6889999999999999999875 8999999999999998 97776 6
Q ss_pred CCCCCCccccccCcc
Q 015716 83 PGASSPLQVKYADGE 97 (402)
Q Consensus 83 ~g~~~~~~~~~~~~~ 97 (402)
.| +.++|++..+.
T Consensus 74 ~G--r~LkV~lkt~d 86 (91)
T 2dnr_A 74 LN--RTITIALKSPS 86 (91)
T ss_dssp TT--EEEEEEECCCS
T ss_pred CC--eEEEEEeCCCC
Confidence 77 78888776644
No 376
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.76 E-value=1.4e-08 Score=73.98 Aligned_cols=71 Identities=14% Similarity=0.345 Sum_probs=57.5
Q ss_pred cceEEEcCCC----CCCcH----HHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCc
Q 015716 102 EHKLFIGMLP----KNVSE----AEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSS 173 (402)
Q Consensus 102 ~~~l~v~nlp----~~~t~----~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~ 173 (402)
..||+|...+ ..+.+ .+|.+.|++||+|..+++..+. +||+|.+.++|.+|++ |||.. ++|+
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~-------~fVtF~d~~sAlaAi~-mnG~~-v~Gr- 76 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK-------MWVTFLEGSSALNVLS-LNGKE-LLNR- 76 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS-------EEEEESSHHHHHHGGG-GTTCE-ETTE-
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC-------EEEEECChHHHHHHHh-cCCeE-eCCe-
Confidence 4577777766 23434 6689999999999999999873 8999999999999998 99998 7776
Q ss_pred eeEEEEEcCC
Q 015716 174 VPLVVKWADT 183 (402)
Q Consensus 174 ~~l~v~~a~~ 183 (402)
.|+|.++.+
T Consensus 77 -~LkV~lkt~ 85 (91)
T 2dnr_A 77 -TITIALKSP 85 (91)
T ss_dssp -EEEEEECCC
T ss_pred -EEEEEeCCC
Confidence 477777654
No 377
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.72 E-value=8.2e-08 Score=84.29 Aligned_cols=69 Identities=20% Similarity=0.345 Sum_probs=59.6
Q ss_pred CCcHHHHHHhhccCCCeeEEEEeeCC-----CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEEcCCH
Q 015716 113 NVSEAEVSALFSIYGTIKDLQILRGS-----QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 184 (402)
Q Consensus 113 ~~t~~~l~~~f~~~G~v~~~~i~~~~-----~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~a~~~ 184 (402)
+-.+++|++.|++||.|.++.|+++. +++++|++||+|.+.++|++|++.|||+. ++|+ .|.+.+....
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~-~~gr--~i~~~~~~~~ 213 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRW-FAGR--KVVAEVYDQE 213 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCB-SSSS--BCEEEECCHH
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCce-ECCe--EEEEEEcCHH
Confidence 34678999999999999999998654 34889999999999999999999999987 7776 4888887744
No 378
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.68 E-value=2e-08 Score=73.48 Aligned_cols=73 Identities=11% Similarity=0.160 Sum_probs=59.8
Q ss_pred CCCCCCeEEEcCCCCC-----CCH----HHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCC
Q 015716 10 SSEERVKLFVGQVPKH-----MTE----AQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKK 80 (402)
Q Consensus 10 ~~~~~~~l~V~nLp~~-----~t~----~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~ 80 (402)
-.++..||+|.-++.. +-+ .+|.+.|.+||.|..++++.|+ +||+|.+.++|.+||+ |++..
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~ 81 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMK 81 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCee
Confidence 3567889999998743 322 5789999999999999999886 9999999999999998 87777
Q ss_pred CCCCCCCCcccccc
Q 015716 81 TLPGASSPLQVKYA 94 (402)
Q Consensus 81 ~~~g~~~~~~~~~~ 94 (402)
+.| +.+++++.
T Consensus 82 -v~G--r~L~V~~k 92 (95)
T 1ufw_A 82 -VKG--RAVKISGP 92 (95)
T ss_dssp -ETT--EEEEEECC
T ss_pred -eCC--eEEEEecc
Confidence 666 77776653
No 379
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.62 E-value=5.8e-08 Score=85.25 Aligned_cols=67 Identities=21% Similarity=0.214 Sum_probs=57.4
Q ss_pred CCHHHHHHHHHhcCCeeEEEEeeCC----CCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCccccccC
Q 015716 26 MTEAQLLAMFKEFALVDEVNIIKDK----TTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYAD 95 (402)
Q Consensus 26 ~t~~~L~~~f~~~G~v~~v~~~~~~----~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~~~~~~ 95 (402)
-.+++|++.|++||.|.++.|.++. .+++++|++||+|.+.++|++|++.||+.. +.| +.|.+.+.+
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~-~~g--r~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRW-FAG--RKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCB-SSS--SBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCce-ECC--eEEEEEEcC
Confidence 4578999999999999999998654 345899999999999999999999997765 777 888877764
No 380
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.50 E-value=7e-08 Score=70.59 Aligned_cols=70 Identities=19% Similarity=0.399 Sum_probs=56.6
Q ss_pred ccceEEEcCCCCC-----CcH----HHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCC
Q 015716 101 LEHKLFIGMLPKN-----VSE----AEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEG 171 (402)
Q Consensus 101 ~~~~l~v~nlp~~-----~t~----~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g 171 (402)
...||+|..++.+ +.+ .+|.+.|+.||+|..+++..++ +||+|.+.++|.+|++ |||.. ++|
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~-------~fVtF~d~~sAl~AI~-ldG~~-v~G 84 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ-------MLVTFADSHSALSVLD-VDGMK-VKG 84 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE-------EEEECSCSHHHHHHHH-GGGSE-ETT
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc-------EEEEEcChHHHHHHHh-cCCee-eCC
Confidence 3578999887643 323 5588999999999999999873 9999999999999998 99998 677
Q ss_pred CceeEEEEEc
Q 015716 172 SSVPLVVKWA 181 (402)
Q Consensus 172 ~~~~l~v~~a 181 (402)
+. |+|.+-
T Consensus 85 r~--L~V~~k 92 (95)
T 1ufw_A 85 RA--VKISGP 92 (95)
T ss_dssp EE--EEEECC
T ss_pred eE--EEEecc
Confidence 64 666653
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.02 E-value=1.1e-05 Score=60.12 Aligned_cols=72 Identities=15% Similarity=0.200 Sum_probs=63.7
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccC-----CCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeE
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFSIY-----GTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPL 176 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~~~-----G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l 176 (402)
.++|-+-|||+.+++..|+.+.+++ |.+..+.+..| .+-|+|+|.+...|-+|.-.|+|.. ++|+ +|
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD-----H~GAivef~d~~~AgKasLaL~G~e-f~gr--~L 92 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD-----FNGAIIIFRDSKFAAKMLMILNGSQ-FQGK--VI 92 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT-----TTEEEEECSCHHHHHHHHHHHSSEE-ETTE--EE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC-----CCceEEEEccchhhHHHHhhcCCee-ecCe--EE
Confidence 5789999999999999999999999 99999999987 5669999999999999999999988 6654 57
Q ss_pred EEEEc
Q 015716 177 VVKWA 181 (402)
Q Consensus 177 ~v~~a 181 (402)
++.-.
T Consensus 93 r~gTv 97 (117)
T 2l9w_A 93 RSGTI 97 (117)
T ss_dssp EEECH
T ss_pred EecCH
Confidence 77543
No 382
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.94 E-value=7.2e-05 Score=55.36 Aligned_cols=90 Identities=19% Similarity=0.223 Sum_probs=69.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhc-----CCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCC
Q 015716 11 SEERVKLFVGQVPKHMTEAQLLAMFKEF-----ALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGA 85 (402)
Q Consensus 11 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~-----G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~ 85 (402)
....++|.|.|||++++++.|.-+|+.- |+|++++... +-|+|+|.+.+.|++.++. ....+.+
T Consensus 5 ~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k--~~H~L~~- 73 (104)
T 2dhx_A 5 SSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ--ADHELHG- 73 (104)
T ss_dssp CCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC--SCCBSSS-
T ss_pred ccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC--CcceecC-
Confidence 4467899999999999999999999872 5898888754 2599999999999999876 2334555
Q ss_pred CCCccccccCcccccccceEEEcCCCCCCc
Q 015716 86 SSPLQVKYADGELERLEHKLFIGMLPKNVS 115 (402)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t 115 (402)
..+.|... ..+...+|++.+|++.++
T Consensus 74 -~~LsV~P~---~~~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 74 -AQLSLRPA---PPRAPARLLLQGLPPGTS 99 (104)
T ss_dssp -SBCEEEEC---CCCCCCCCCCCSCCCCCC
T ss_pred -eEEEEEcC---CCCCcceEeeecCCCCCC
Confidence 55555432 234467899999998764
No 383
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.77 E-value=9.7e-05 Score=54.06 Aligned_cols=70 Identities=11% Similarity=0.139 Sum_probs=57.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCC--cccEEEEEeCCHHHHHHHHHHhcCCCCCCC
Q 015716 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRA--SRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (402)
Q Consensus 15 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~--~~g~afV~F~~~~~a~~ai~~l~~~~~~~g 84 (402)
++|.||+||+.+||+++.+.++....+.....+..+.+.+ .-.-|||.|.+.+++....+.+++..+...
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~ 73 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDN 73 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcC
Confidence 6899999999999999999999998877777666543322 224599999999999999999988776544
No 384
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.74 E-value=0.00011 Score=54.78 Aligned_cols=67 Identities=10% Similarity=0.165 Sum_probs=59.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhc-----CCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCC
Q 015716 11 SEERVKLFVGQVPKHMTEAQLLAMFKEF-----ALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (402)
Q Consensus 11 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~-----G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g 84 (402)
....++|=+-|||..+++..|+.+.+++ |.|..+.+..|.. =|+|+|.+...|-+|.-.|++.. +.|
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~------GAivef~d~~~AgKasLaL~G~e-f~g 89 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN------GAIIIFRDSKFAAKMLMILNGSQ-FQG 89 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT------EEEEECSCHHHHHHHHHHHSSEE-ETT
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC------ceEEEEccchhhHHHHhhcCCee-ecC
Confidence 4458899999999999999999999999 9999999998864 59999999999999998897776 444
No 385
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.58 E-value=0.00026 Score=51.72 Aligned_cols=59 Identities=24% Similarity=0.413 Sum_probs=49.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q 015716 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACH 77 (402)
Q Consensus 10 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~ 77 (402)
.....+.++| ++|+.+...||.++|+.||.| .|+.+-|- -|||.|.+++.|..|++.+.
T Consensus 12 ~p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 12 QPKRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CCCCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 3444555666 999999999999999999964 57877775 69999999999999999763
No 386
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.54 E-value=0.00077 Score=49.27 Aligned_cols=79 Identities=13% Similarity=0.284 Sum_probs=62.3
Q ss_pred ceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC---CCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCce--eEE
Q 015716 103 HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS---QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV--PLV 177 (402)
Q Consensus 103 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~--~l~ 177 (402)
.+|.|++||+.+|++++.+.++...++......... ......-|+|.|.+.+++..-.+.++|..+.+.+.. .-.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 479999999999999999999999888777776543 112236799999999999999999999987765443 234
Q ss_pred EEEc
Q 015716 178 VKWA 181 (402)
Q Consensus 178 v~~a 181 (402)
|++|
T Consensus 82 VE~A 85 (91)
T 1uw4_A 82 VEFA 85 (91)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 5555
No 387
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.25 E-value=0.00063 Score=49.70 Aligned_cols=55 Identities=24% Similarity=0.464 Sum_probs=46.1
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHc
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAIN 164 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 164 (402)
...+++ .+|.++...||.++|+.||. ..|+++.|. -|||.|.+++.|..|+..++
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~WidDT------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEETT------EEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEcCC------eEEEEecCHHHHHHHHHhcc
Confidence 345666 99999999999999999994 446777652 59999999999999999775
No 388
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.15 E-value=0.00096 Score=51.07 Aligned_cols=67 Identities=12% Similarity=0.154 Sum_probs=52.5
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCC
Q 015716 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (402)
Q Consensus 9 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g 84 (402)
.+....+-|.|-+.|+.. ...|...|++||.|.+..... ...+-.|.|.+..+|++||.+ |..++.+
T Consensus 19 ~~~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~k--NG~ii~g 85 (119)
T 1wwh_A 19 EDHLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALSK--DGRIFGE 85 (119)
T ss_dssp --CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHTT--TTCEETT
T ss_pred CCCCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHHh--CCeEecC
Confidence 345567889999999984 778888999999999887621 223899999999999999987 6665553
No 389
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.10 E-value=0.00057 Score=50.83 Aligned_cols=73 Identities=15% Similarity=0.199 Sum_probs=59.1
Q ss_pred cceEEEcCCCCCCc-----HHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeE
Q 015716 102 EHKLFIGMLPKNVS-----EAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPL 176 (402)
Q Consensus 102 ~~~l~v~nlp~~~t-----~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l 176 (402)
.++|+|.||+.++- .+.++++|..|+++....+.+. -.-..|.|.+.++|.+|...|++.. +.|+ ++
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS-----FRRirv~F~~~~~A~~AR~~Lh~~~-f~g~--~~ 76 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS-----FKRVRINFSNPLSAADARLRLHKTE-FLGK--EM 76 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT-----TTEEEEECSSTTHHHHHHHTSTTSE-ETTE--EC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc-----ceEEEEEeCChHHHHHHHHHhccce-ecCc--ee
Confidence 57899999987652 2678999999999888777653 3457899999999999999999988 5665 47
Q ss_pred EEEEcC
Q 015716 177 VVKWAD 182 (402)
Q Consensus 177 ~v~~a~ 182 (402)
+|-++.
T Consensus 77 r~YFgq 82 (104)
T 1wey_A 77 KLYFAQ 82 (104)
T ss_dssp EEECCC
T ss_pred EEEecC
Confidence 777776
No 390
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.09 E-value=0.00068 Score=49.67 Aligned_cols=53 Identities=26% Similarity=0.414 Sum_probs=45.9
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q 015716 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACH 77 (402)
Q Consensus 16 ~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~ 77 (402)
.++| ++|+.+...||.++|+.||. ..|+.+-|- -|||.|.+++.|..|++.+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 4555 99999999999999999994 467777775 69999999999999999873
No 391
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.06 E-value=0.00058 Score=50.05 Aligned_cols=54 Identities=24% Similarity=0.433 Sum_probs=46.2
Q ss_pred ceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHc
Q 015716 103 HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAIN 164 (402)
Q Consensus 103 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 164 (402)
..+++ ++|.++...||.++|+.|| -..|.++.|. -|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC------eEEEEecCHHHHHHHHHhcc
Confidence 34666 9999999999999999999 5567777762 59999999999999999875
No 392
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.88 E-value=0.0008 Score=49.45 Aligned_cols=72 Identities=8% Similarity=0.073 Sum_probs=51.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCC-C-cccEEEEEeCCHHHHHHHHHHhcCCCCCCC
Q 015716 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTR-A-SRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (402)
Q Consensus 13 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~-~-~~g~afV~F~~~~~a~~ai~~l~~~~~~~g 84 (402)
.+-+|.||.||+.+||+++.+.++.+-++.....+.-+.+. . .-.-|||.|.+.++.....+.+++..++..
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~ 81 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDS 81 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECT
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeC
Confidence 45689999999999999998888776554332222222221 1 113489999999999999999977765544
No 393
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.66 E-value=0.0042 Score=45.63 Aligned_cols=80 Identities=14% Similarity=0.273 Sum_probs=57.2
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCC--CCC-cceEEEEEeCCHHHHHHHHHHHcCCcccCCCc--eeE
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS--QQT-SKGCAFLKYETKEQALAALEAINGKHKMEGSS--VPL 176 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~--~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~--~~l 176 (402)
.-+|.|+.||+.+||+++.+.++.+-++......... .+. .-.-|+|.|.+.++...-.+..+|..+++.+. .+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 3479999999999999999888876554433332222 111 12569999999999999999999988776443 344
Q ss_pred EEEEc
Q 015716 177 VVKWA 181 (402)
Q Consensus 177 ~v~~a 181 (402)
.|++|
T Consensus 89 ~VE~A 93 (97)
T 2l08_A 89 VVEFA 93 (97)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 56655
No 394
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.56 E-value=0.017 Score=42.66 Aligned_cols=68 Identities=19% Similarity=0.267 Sum_probs=52.7
Q ss_pred cceEEEcCCCCCCcHHHHHHhhcc---C--CCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeE
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFSI---Y--GTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPL 176 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~~---~--G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l 176 (402)
.++|.|.|||.++.++.|.-+|+. - |+|++++... +-|+|+|.+.+.|++.++. ....+.+.. |
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-------~~AvItF~d~~va~rVL~k--~~H~L~~~~--L 76 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-------CGGVLTFREPADAERVLAQ--ADHELHGAQ--L 76 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-------TEEEEEESSHHHHHHHHTC--SCCBSSSSB--C
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-------CcEEEEEcChHHHHHHhcC--CcceecCeE--E
Confidence 578999999999999999999987 2 4788887753 4589999999999999864 133466653 5
Q ss_pred EEEE
Q 015716 177 VVKW 180 (402)
Q Consensus 177 ~v~~ 180 (402)
.|.-
T Consensus 77 sV~P 80 (104)
T 2dhx_A 77 SLRP 80 (104)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 5543
No 395
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.37 E-value=0.021 Score=43.65 Aligned_cols=74 Identities=20% Similarity=0.246 Sum_probs=56.4
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCCcccCCCceeEEEEEc
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~v~~a 181 (402)
.+.|.|-+.|... ...|.+.|++||+|.+..... ...+-.|+|.+..+|++||. .||.. +++. .-|-|...
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~-----~~NWihI~Y~s~~~A~rAL~-kNG~i-i~g~-~mIGV~p~ 94 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN-----TGNWMHIRYQSKLQARKALS-KDGRI-FGES-IMIGVKPC 94 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS-----SSSEEEEEESSHHHHHHHHT-TTTCE-ETTT-EECEEEEC
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC-----CCCeEEEEeCCHHHHHHHHH-hCCeE-ecCC-EEEEEEEC
Confidence 5678888999885 556788999999999887622 24689999999999999997 58876 5544 34666665
Q ss_pred CCH
Q 015716 182 DTE 184 (402)
Q Consensus 182 ~~~ 184 (402)
..+
T Consensus 95 ~d~ 97 (119)
T 1wwh_A 95 IDK 97 (119)
T ss_dssp CCH
T ss_pred CCH
Confidence 544
No 396
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.29 E-value=0.0057 Score=45.44 Aligned_cols=65 Identities=12% Similarity=0.132 Sum_probs=52.5
Q ss_pred CCCeEEEcCCCCCC-C----HHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCC
Q 015716 13 ERVKLFVGQVPKHM-T----EAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (402)
Q Consensus 13 ~~~~l~V~nLp~~~-t----~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g 84 (402)
-.++|+|.||+.++ . .+.++++|..|+++.....++.-. -..|.|.++++|.+|...||+.. +.|
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR------Rirv~F~~~~~A~~AR~~Lh~~~-f~g 73 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK------RVRINFSNPLSAADARLRLHKTE-FLG 73 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT------EEEEECSSTTHHHHHHHTSTTSE-ETT
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce------EEEEEeCChHHHHHHHHHhccce-ecC
Confidence 35789999998865 3 257789999999988877776542 47899999999999999998777 555
No 397
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.25 E-value=0.00079 Score=64.53 Aligned_cols=61 Identities=10% Similarity=0.216 Sum_probs=45.9
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHH
Q 015716 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75 (402)
Q Consensus 9 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~ 75 (402)
++....++|||. .|...++++|.++|++||+|.++.+..++ | -|+.|+|.+.+++..++..
T Consensus 48 r~~qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 48 RREQAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HHHHHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEECC---CCHHHHSS
T ss_pred HHHHhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHHhc
Confidence 344567899997 79999999999999999999999887654 2 4999999999999977654
No 398
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=94.77 E-value=0.023 Score=44.01 Aligned_cols=69 Identities=17% Similarity=0.295 Sum_probs=46.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeE-EEEeeCC--------CCC-----CcccEEEEEeCCHHHHHHHHHHhcC
Q 015716 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDE-VNIIKDK--------TTR-----ASRGCCFVICPSRQEADKAVNACHN 78 (402)
Q Consensus 13 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~-v~~~~~~--------~t~-----~~~g~afV~F~~~~~a~~ai~~l~~ 78 (402)
....|.|-+.|++ ....+.+.|++||.|.+ ..+.++. .+. ....+-.|+|.+..+|++|+.. |
T Consensus 6 ~e~~VtVFGFp~~-~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~--N 82 (132)
T 3p3d_A 6 GELAILVFGYPET-MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE--N 82 (132)
T ss_dssp --CEEEEECCCGG-GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT--T
T ss_pred CceEEEEEecCHH-HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh--C
Confidence 3467888899766 45667778999999877 2211100 001 1345789999999999999987 6
Q ss_pred CCCCCC
Q 015716 79 KKTLPG 84 (402)
Q Consensus 79 ~~~~~g 84 (402)
.+++.|
T Consensus 83 G~ii~G 88 (132)
T 3p3d_A 83 GAVFNG 88 (132)
T ss_dssp TCEETT
T ss_pred CeEeCc
Confidence 676766
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=94.27 E-value=0.023 Score=54.43 Aligned_cols=55 Identities=18% Similarity=0.259 Sum_probs=41.9
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHH
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALE 161 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~ 161 (402)
.+.|||. .+..+++.+|.++|++||.|.++..-++. .-|+.|+|.+.+++++++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS----SEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC----CeEEEEEeCCHHHHHHHHh
Confidence 6789997 79999999999999999999998776542 3699999999999987764
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=91.03 E-value=0.38 Score=37.20 Aligned_cols=76 Identities=25% Similarity=0.350 Sum_probs=51.9
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCCeeE-EEEeeCC-------------CC-CcceEEEEEeCCHHHHHHHHHHHcCC
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKD-LQILRGS-------------QQ-TSKGCAFLKYETKEQALAALEAINGK 166 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~-~~i~~~~-------------~~-~~~g~afV~f~~~~~A~~A~~~l~g~ 166 (402)
...|.|-+.|.+.... +-+.|++||.|.+ ....++. .. .......|+|++..+|++||. -||.
T Consensus 7 e~~VtVFGFp~~~~~~-VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMANQ-VIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGHHH-HHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHHHH-HHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 3457777887766554 6678999999876 2222100 00 124678999999999999997 6887
Q ss_pred cccCCCceeEEEEEcC
Q 015716 167 HKMEGSSVPLVVKWAD 182 (402)
Q Consensus 167 ~~~~g~~~~l~v~~a~ 182 (402)
. ++|. -|-|...+
T Consensus 85 i-i~G~--mIGV~Py~ 97 (132)
T 3p3d_A 85 V-FNGV--LLGVIPYT 97 (132)
T ss_dssp E-ETTE--ECEEEECC
T ss_pred E-eCcE--EEEEEECC
Confidence 6 7775 46777765
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=90.38 E-value=0.8 Score=44.63 Aligned_cols=55 Identities=25% Similarity=0.381 Sum_probs=45.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q 015716 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACH 77 (402)
Q Consensus 14 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~ 77 (402)
...++|+ +|..+...+|.++|+.||. .+|+.+-|. .|||.|.+.+.|..+++.++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widdt-------~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSSS-------EEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcCC-------eEEEEECCHHHHHHHHHHHH
Confidence 3456665 9999999999999999996 466655543 69999999999999999884
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=84.24 E-value=2.2 Score=41.49 Aligned_cols=56 Identities=23% Similarity=0.414 Sum_probs=45.6
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcC
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 165 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 165 (402)
...++++ +|..|...+|.++|+.||. .+|+++.+ ..|||.|.+.+.|..+++.++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widd------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDD------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSS------SEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcC------CeEEEEECCHHHHHHHHHHHHh
Confidence 4456665 9999999999999999994 45666654 3699999999999999998864
No 403
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=61.38 E-value=15 Score=29.69 Aligned_cols=48 Identities=10% Similarity=0.131 Sum_probs=37.9
Q ss_pred cEEEecCCC-C--------CCHHHHHHHh--hccCcEEEEEEEEeCCCCCcceEEEEEeecC
Q 015716 351 NLFIYHIPQ-E--------FGDQELGNAF--QAFGRVLSAKVFVDKATGVSKCFGKYTVDLD 401 (402)
Q Consensus 351 ~lfV~nLp~-~--------~t~~~L~~~F--~~fG~v~~~~i~~d~~tg~skG~gFV~f~~~ 401 (402)
.+.|-|+|. . .+..+|++.| +.|..+. |+.+.++ .-++|++.|.|.+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~d 72 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKD 72 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSS
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCC
Confidence 467779987 2 3458999977 9999975 7888886 34889999999864
No 404
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=48.13 E-value=35 Score=24.11 Aligned_cols=56 Identities=7% Similarity=0.164 Sum_probs=40.1
Q ss_pred eEEEcCCCCCCcHHHHHHhhcc-CC-CeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHH
Q 015716 104 KLFIGMLPKNVSEAEVSALFSI-YG-TIKDLQILRGSQQTSKGCAFLKYETKEQALAALE 161 (402)
Q Consensus 104 ~l~v~nlp~~~t~~~l~~~f~~-~G-~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~ 161 (402)
+-|+-.+....+..+|++.++. |+ .|.++..+.-+.+. --|+|++....+|.....
T Consensus 24 n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~--KKA~V~L~~~~~a~dva~ 81 (86)
T 3j21_T 24 NKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGE--KKAYVKLKPEYSASEVAA 81 (86)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSC--EEEEEEECTTSCHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCc--eEEEEEcCCCCcHHHHHH
Confidence 3444455778899999998876 67 68888877655443 359999988877766544
No 405
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=44.14 E-value=59 Score=22.91 Aligned_cols=58 Identities=16% Similarity=0.160 Sum_probs=42.2
Q ss_pred eEEEcCCCCCCCHHHHHHHHHh-cC-CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 015716 16 KLFVGQVPKHMTEAQLLAMFKE-FA-LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76 (402)
Q Consensus 16 ~l~V~nLp~~~t~~~L~~~f~~-~G-~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l 76 (402)
.-|+-..+..++..+|++.+++ |+ .|..|..+..+. + .--|+|++....+|......+
T Consensus 24 n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~-~--~KKA~V~L~~~~~a~dva~ki 83 (86)
T 3j21_T 24 NKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPR-G--EKKAYVKLKPEYSASEVAARL 83 (86)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTT-S--CEEEEEEECTTSCHHHHHHHS
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCC-C--ceEEEEEcCCCCcHHHHHHhh
Confidence 3455566789999999999987 67 688888776542 2 124999998887777655443
No 406
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=39.82 E-value=79 Score=25.50 Aligned_cols=50 Identities=16% Similarity=0.192 Sum_probs=36.7
Q ss_pred eEEEcCCCC-C--------CCHHHHHHHH--HhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHH
Q 015716 16 KLFVGQVPK-H--------MTEAQLLAMF--KEFALVDEVNIIKDKTTRASRGCCFVICPSRQE 68 (402)
Q Consensus 16 ~l~V~nLp~-~--------~t~~~L~~~f--~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~ 68 (402)
++.|-|+|. . ....+|++.| ..|.++ .|+.+.+.. -++|++.|.|.+.-.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~-kv~~l~~~~--Gh~g~aIv~F~~dw~ 74 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPT-RVRPLWNYL--GHSGTAIVEFNKDWN 74 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCS-EEEEEECSS--BEEEEEEEECCSSHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCc-eeEecccCC--CCceeEEEEecCChH
Confidence 466778876 2 4457999977 899985 477777653 488999999976543
No 407
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=38.90 E-value=1e+02 Score=21.72 Aligned_cols=57 Identities=11% Similarity=0.185 Sum_probs=46.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 015716 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76 (402)
Q Consensus 12 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l 76 (402)
...|-|-|-|||..+-..++.-.....|---.|..+- |.|.|.|.+.++-..||..|
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHH
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHH
Confidence 4567888999999999999988888888655665532 46999999999999999886
No 408
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=28.30 E-value=19 Score=25.80 Aligned_cols=11 Identities=27% Similarity=0.392 Sum_probs=8.8
Q ss_pred CCcceEEEEEe
Q 015716 388 GVSKCFGKYTV 398 (402)
Q Consensus 388 g~skG~gFV~f 398 (402)
+..||||||+-
T Consensus 17 n~~KGfGFI~~ 27 (90)
T 3ulj_A 17 NVRMGFGFISM 27 (90)
T ss_dssp ETTTTEEEEEE
T ss_pred eCCCCeEEeEe
Confidence 45789999974
No 409
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=27.88 E-value=21 Score=24.42 Aligned_cols=11 Identities=27% Similarity=0.289 Sum_probs=8.7
Q ss_pred CcceEEEEEee
Q 015716 389 VSKCFGKYTVD 399 (402)
Q Consensus 389 ~skG~gFV~f~ 399 (402)
..||||||+=+
T Consensus 12 ~~KGfGFI~~~ 22 (74)
T 2k5n_A 12 KDKGFGFIKDE 22 (74)
T ss_dssp TTTTEEEEEES
T ss_pred CCCCeEEEecC
Confidence 56899999854
No 410
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=26.38 E-value=23 Score=23.59 Aligned_cols=11 Identities=45% Similarity=0.437 Sum_probs=8.7
Q ss_pred CcceEEEEEee
Q 015716 389 VSKCFGKYTVD 399 (402)
Q Consensus 389 ~skG~gFV~f~ 399 (402)
..||||||+=+
T Consensus 11 ~~kGfGFI~~~ 21 (67)
T 3cam_A 11 DAKGFGFITPD 21 (67)
T ss_dssp TTTTEEEEEET
T ss_pred CCCCeEEEecC
Confidence 45899999854
No 411
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=26.08 E-value=24 Score=23.42 Aligned_cols=11 Identities=27% Similarity=0.392 Sum_probs=8.4
Q ss_pred CcceEEEEEee
Q 015716 389 VSKCFGKYTVD 399 (402)
Q Consensus 389 ~skG~gFV~f~ 399 (402)
..||||||+=+
T Consensus 11 ~~kGfGFI~~~ 21 (66)
T 1c9o_A 11 NEKGYGFIEVE 21 (66)
T ss_dssp TTTTEEEEEET
T ss_pred CCCCeEEEecC
Confidence 45899999754
No 412
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=25.56 E-value=88 Score=24.54 Aligned_cols=56 Identities=9% Similarity=0.272 Sum_probs=39.6
Q ss_pred eEEEcCCCCCCcHHHHHHhhcc-CC-CeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHH
Q 015716 104 KLFIGMLPKNVSEAEVSALFSI-YG-TIKDLQILRGSQQTSKGCAFLKYETKEQALAALE 161 (402)
Q Consensus 104 ~l~v~nlp~~~t~~~l~~~f~~-~G-~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~ 161 (402)
+-|+-.++...+..+|++.++. |+ .|..|..+.-++|. --|||++....+|.....
T Consensus 88 N~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~g~--KKAyV~La~~~dAldvAn 145 (150)
T 4a17_R 88 NTMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTITGN--KKAYIRLAADSDSLTLAN 145 (150)
T ss_dssp SEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSC--EEEEEEECSSSCHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCc--EEEEEEcCCCCcHHHHHH
Confidence 4455556778899999988876 56 58888777665543 349999987777665543
No 413
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=25.54 E-value=1.8e+02 Score=20.45 Aligned_cols=55 Identities=16% Similarity=0.235 Sum_probs=44.4
Q ss_pred cceEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHH
Q 015716 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAI 163 (402)
Q Consensus 102 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l 163 (402)
.+-+-|-|+|..+-..++--.....|---.|+.+ .|.|.++|.+.++-.-|+.+|
T Consensus 12 nclikiinipqgtlkaevvlavrhlgyefycdyi-------dgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI-------DGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC-------SSCEEEEESSHHHHHHHHHHH
T ss_pred CcEEEEEecCCCceeeeeEEeehhcCeeEeeeee-------cCeeEEEecCChHHHHHHHHH
Confidence 5667888999888887777677777876677776 356999999999999999776
No 414
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=25.38 E-value=63 Score=28.20 Aligned_cols=34 Identities=18% Similarity=0.366 Sum_probs=29.8
Q ss_pred cEEEecCCCCCCHHHHHHHhhccCcEEEEEEEEeC
Q 015716 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDK 385 (402)
Q Consensus 351 ~lfV~nLp~~~t~~~L~~~F~~fG~v~~~~i~~d~ 385 (402)
.+.|+|||+.++..-|++++.. +.+.++-++..+
T Consensus 112 ~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~Qk 145 (271)
T 3fut_A 112 SLLVANLPYHIATPLVTRLLKT-GRFARLVFLVQK 145 (271)
T ss_dssp EEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEEEH
T ss_pred cEEEecCcccccHHHHHHHhcC-CCCCEEEEEeee
Confidence 4899999999999999999988 888888887654
No 415
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=24.99 E-value=97 Score=24.09 Aligned_cols=56 Identities=11% Similarity=0.188 Sum_probs=39.8
Q ss_pred eEEEcCCCCCCcHHHHHHhhcc-CC-CeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHH
Q 015716 104 KLFIGMLPKNVSEAEVSALFSI-YG-TIKDLQILRGSQQTSKGCAFLKYETKEQALAALE 161 (402)
Q Consensus 104 ~l~v~nlp~~~t~~~l~~~f~~-~G-~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~ 161 (402)
+-|+-.++...+..+|++.++. |+ .|..|..+.-++|. --|||++....+|.....
T Consensus 80 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~--KKAyV~L~~~~daldvAn 137 (142)
T 3u5e_X 80 NILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGT--KKAYVRLTADYDALDIAN 137 (142)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTTSC--EEEEEEECTTCCHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCc--eEEEEEeCCCCcHHHHHH
Confidence 4555556778899999988876 56 68888777665543 349999987777665543
No 416
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=24.63 E-value=26 Score=23.22 Aligned_cols=11 Identities=36% Similarity=0.410 Sum_probs=8.6
Q ss_pred CcceEEEEEee
Q 015716 389 VSKCFGKYTVD 399 (402)
Q Consensus 389 ~skG~gFV~f~ 399 (402)
..||||||+=+
T Consensus 10 ~~kGfGFI~~~ 20 (66)
T 1g6p_A 10 SKKGYGFITKD 20 (66)
T ss_dssp TTTTEEEEEET
T ss_pred CCCCEEEEecC
Confidence 45899999854
No 417
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=24.36 E-value=88 Score=22.07 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=20.7
Q ss_pred cEEEEEEEEeCCCCCcceEEEEEeec
Q 015716 375 RVLSAKVFVDKATGVSKCFGKYTVDL 400 (402)
Q Consensus 375 ~v~~~~i~~d~~tg~skG~gFV~f~~ 400 (402)
+|+.|+|-.=...|+-|||+=|+|++
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 47778886555578999999999986
No 418
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=24.16 E-value=2.3e+02 Score=21.38 Aligned_cols=111 Identities=12% Similarity=0.075 Sum_probs=60.2
Q ss_pred HHHHHHHHHhcC-CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCCccccccCcccccccceEE
Q 015716 28 EAQLLAMFKEFA-LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLF 106 (402)
Q Consensus 28 ~~~L~~~f~~~G-~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~ 106 (402)
-.+|...|.+.| .|..+.+....+ .|+--+.+.+.+.|.++++.+ +... . ...++
T Consensus 20 l~~i~~~la~~~inI~~i~~~~~~~----~~~~~~~~~d~~~a~~~L~~~-G~~v-------~------------~~svv 75 (144)
T 2f06_A 20 LTEVTEVLAKENINLSALCIAENAD----FGILRGIVSDPDKAYKALKDN-HFAV-------N------------ITDVV 75 (144)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEECSS----CEEEEEEESCHHHHHHHHHHT-TCCE-------E------------EEEEE
T ss_pred HHHHHHHHHHCCCCEEEEEEEecCC----CCEEEEEeCCHHHHHHHHHHc-CCeE-------e------------eeeEE
Confidence 467788888877 455554432211 133212356777777777653 2110 0 01233
Q ss_pred EcCCCCCC-cHHHHHHhhccCC-CeeEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHHHcCC
Q 015716 107 IGMLPKNV-SEAEVSALFSIYG-TIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 166 (402)
Q Consensus 107 v~nlp~~~-t~~~l~~~f~~~G-~v~~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 166 (402)
.-.++... --.++.+.+...| .|..+.... . ..+....+.+++.+.|.++++. .|.
T Consensus 76 ~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~-~--~~~~~~~i~~~d~~~A~~~L~~-~g~ 133 (144)
T 2f06_A 76 GISCPNVPGALAKVLGFLSAEGVFIEYMYSFA-N--NNVANVVIRPSNMDKCIEVLKE-KKV 133 (144)
T ss_dssp EEEEESSTTHHHHHHHHHHHTTCCEEEEEEEE-E--TTEEEEEEEESCHHHHHHHHHH-TTC
T ss_pred EEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEc-c--CCcEEEEEEeCCHHHHHHHHHH-cCC
Confidence 32344332 3345666777777 465554442 1 1356777899988888888865 443
No 419
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=24.11 E-value=1.8e+02 Score=20.49 Aligned_cols=44 Identities=9% Similarity=0.186 Sum_probs=28.5
Q ss_pred HHHHHHHHHh----cC-CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 015716 28 EAQLLAMFKE----FA-LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76 (402)
Q Consensus 28 ~~~L~~~f~~----~G-~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l 76 (402)
|..+++.+.+ -| .|.++.+.. ...||.||++...++...+|+..
T Consensus 22 E~~V~~~L~~~~~~~~l~i~~v~vP~-----~fPGYVfVe~~~~~~~~~~I~~t 70 (92)
T 3lpe_A 22 EKNIAGLMASRAEKEQLDVYSILASE-----SLKGYVLVEAETKGDVEELIKGM 70 (92)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECT-----TSTTEEEEEESSHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEEec-----ccCCEEEEEEecchhHHHHHHCC
Confidence 5555544443 24 355555433 27899999999998888777653
No 420
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=24.05 E-value=16 Score=28.94 Aligned_cols=28 Identities=25% Similarity=0.319 Sum_probs=16.9
Q ss_pred HHHHHhhccCCCeeEEEEeeCCCCCcceEEEEEeC
Q 015716 117 AEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYE 151 (402)
Q Consensus 117 ~~l~~~f~~~G~v~~~~i~~~~~~~~~g~afV~f~ 151 (402)
+|+.++|...|.|++... .+||+||+-.
T Consensus 2 ~~~~~l~~~~G~Vkwfn~-------~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNV-------RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEET-------TTTEEEEEEE
T ss_pred CcccccccceeEEEEEEC-------CCCeeEEeeC
Confidence 456677877777665432 3789999865
No 421
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=23.52 E-value=28 Score=24.09 Aligned_cols=12 Identities=17% Similarity=0.302 Sum_probs=9.1
Q ss_pred CCcceEEEEEee
Q 015716 388 GVSKCFGKYTVD 399 (402)
Q Consensus 388 g~skG~gFV~f~ 399 (402)
+..||||||+=+
T Consensus 17 n~~kGfGFI~~~ 28 (79)
T 1h95_A 17 NVRNGYGFINRN 28 (79)
T ss_dssp ETTTTEEEEEEG
T ss_pred ECCCCcEEEecC
Confidence 356899999854
No 422
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=22.67 E-value=1.7e+02 Score=22.68 Aligned_cols=57 Identities=21% Similarity=0.165 Sum_probs=40.4
Q ss_pred EEEcCCCCCCCHHHHHHHHHh-cC-CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 015716 17 LFVGQVPKHMTEAQLLAMFKE-FA-LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76 (402)
Q Consensus 17 l~V~nLp~~~t~~~L~~~f~~-~G-~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l 76 (402)
-|+--++..++..+|++.+++ |+ .|..|..+.... + .--|||.+....+|......+
T Consensus 81 ~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~-g--~KKAyV~L~~~~daldvAnki 139 (142)
T 3u5e_X 81 ILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPN-G--TKKAYVRLTADYDALDIANRI 139 (142)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTT-S--CEEEEEEECTTCCHHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCC-C--ceEEEEEeCCCCcHHHHHHhh
Confidence 445556789999999999987 67 688888777653 2 124999998776666654443
No 423
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=22.42 E-value=31 Score=23.29 Aligned_cols=11 Identities=45% Similarity=0.440 Sum_probs=8.6
Q ss_pred CcceEEEEEee
Q 015716 389 VSKCFGKYTVD 399 (402)
Q Consensus 389 ~skG~gFV~f~ 399 (402)
..||||||+=+
T Consensus 15 ~~kGfGFI~~~ 25 (71)
T 3i2z_B 15 ESKGFGFITPE 25 (71)
T ss_dssp TTTTEEEEEET
T ss_pred CCCCcEEEecC
Confidence 46899999854
No 424
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=21.85 E-value=2e+02 Score=22.54 Aligned_cols=57 Identities=18% Similarity=0.209 Sum_probs=40.5
Q ss_pred EEEcCCCCCCCHHHHHHHHHh-cC-CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 015716 17 LFVGQVPKHMTEAQLLAMFKE-FA-LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76 (402)
Q Consensus 17 l~V~nLp~~~t~~~L~~~f~~-~G-~v~~v~~~~~~~t~~~~g~afV~F~~~~~a~~ai~~l 76 (402)
-|+--++..++..+|++.+++ |+ .|..|..+.... | .--|||.+....+|......+
T Consensus 89 ~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~-g--~KKAyV~La~~~dAldvAnki 147 (150)
T 4a17_R 89 TMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTIT-G--NKKAYIRLAADSDSLTLANKI 147 (150)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTT-S--CEEEEEEECSSSCHHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCC-C--cEEEEEEcCCCCcHHHHHHhh
Confidence 445556789999999999987 67 688888776653 2 124999998776766654443
No 425
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=21.82 E-value=42 Score=29.53 Aligned_cols=35 Identities=11% Similarity=0.099 Sum_probs=30.7
Q ss_pred cEEEecCCCCCCHHHHHHHhhccCcEEEEEEEEeC
Q 015716 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDK 385 (402)
Q Consensus 351 ~lfV~nLp~~~t~~~L~~~F~~fG~v~~~~i~~d~ 385 (402)
.+.|+|||+.++..-|+.++..-..+.++-++..+
T Consensus 116 ~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~Qk 150 (279)
T 3uzu_A 116 LRIIGNLPYNISSPLLFHLMSFAPVVIDQHFMLQN 150 (279)
T ss_dssp EEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEEEH
T ss_pred eEEEEccCccccHHHHHHHHhccCCccEEEEEeeH
Confidence 48999999999999999999887788888887754
No 426
>1ytr_A Bacteriocin plantaricin A; antibiotic, pheromone, amphipathic helix, micelle; NMR {Synthetic}
Probab=20.44 E-value=51 Score=16.62 Aligned_cols=12 Identities=25% Similarity=0.479 Sum_probs=9.9
Q ss_pred HHHHHHHHHhcC
Q 015716 28 EAQLLAMFKEFA 39 (402)
Q Consensus 28 ~~~L~~~f~~~G 39 (402)
..+++++|.++|
T Consensus 14 ikqvkklfkkwg 25 (26)
T 1ytr_A 14 IKQVKKLFKKWG 25 (26)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHHHcC
Confidence 468899999887
Done!