Query 015718
Match_columns 402
No_of_seqs 386 out of 2259
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 08:55:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015718.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015718hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02878 homogentisate phytylt 100.0 2.4E-55 5.1E-60 418.9 28.9 274 128-402 7-280 (280)
2 PRK12887 ubiA tocopherol phyty 100.0 1.5E-52 3.2E-57 411.6 33.1 304 94-402 2-306 (308)
3 PRK12895 ubiA prenyltransferas 100.0 8E-36 1.7E-40 289.5 30.9 259 104-385 2-263 (286)
4 PRK13106 ubiA prenyltransferas 100.0 8.9E-36 1.9E-40 291.3 29.8 277 99-397 9-297 (300)
5 PRK12870 ubiA 4-hydroxybenzoat 100.0 1.5E-35 3.3E-40 289.2 29.4 265 101-390 5-277 (290)
6 PLN02809 4-hydroxybenzoate non 100.0 5.2E-35 1.1E-39 284.8 32.4 259 102-385 3-269 (289)
7 TIGR01475 ubiA_other putative 100.0 3.8E-35 8.3E-40 285.5 31.3 260 105-386 2-264 (282)
8 PRK12888 ubiA prenyltransferas 100.0 1.8E-34 3.8E-39 280.7 30.9 268 105-396 2-282 (284)
9 PRK12874 ubiA prenyltransferas 100.0 3.7E-34 8.1E-39 279.3 32.6 263 102-386 5-272 (291)
10 PRK12873 ubiA prenyltransferas 100.0 1.5E-34 3.3E-39 280.9 29.4 267 102-391 4-282 (294)
11 PRK12848 ubiA 4-hydroxybenzoat 100.0 7.7E-34 1.7E-38 276.4 30.2 264 102-390 2-271 (282)
12 PRK12886 ubiA prenyltransferas 100.0 1.5E-33 3.2E-38 275.2 32.2 265 102-390 5-273 (291)
13 PRK12876 ubiA prenyltransferas 100.0 2.1E-33 4.5E-38 273.0 32.6 277 103-402 2-299 (300)
14 PRK12882 ubiA prenyltransferas 100.0 1.3E-33 2.9E-38 273.9 30.2 264 104-391 3-269 (276)
15 PRK12884 ubiA prenyltransferas 100.0 1.7E-33 3.7E-38 273.4 30.7 263 103-390 2-265 (279)
16 PRK09573 (S)-2,3-di-O-geranylg 100.0 1.7E-33 3.6E-38 273.6 29.8 255 104-383 2-257 (279)
17 COG0382 UbiA 4-hydroxybenzoate 100.0 2.3E-33 4.9E-38 274.0 30.7 266 100-389 5-275 (289)
18 PRK12847 ubiA 4-hydroxybenzoat 100.0 3.7E-33 8.1E-38 271.9 31.2 266 102-391 4-275 (285)
19 PRK12878 ubiA 4-hydroxybenzoat 100.0 5.6E-33 1.2E-37 273.6 32.5 270 97-389 22-300 (314)
20 TIGR01474 ubiA_proteo 4-hydrox 100.0 3.9E-33 8.4E-38 271.3 30.9 261 105-390 1-269 (281)
21 PRK12392 bacteriochlorophyll c 100.0 4.6E-33 1E-37 275.5 30.8 255 102-372 9-271 (331)
22 PRK07566 bacteriochlorophyll/c 100.0 5.6E-33 1.2E-37 274.0 30.9 227 100-338 22-249 (314)
23 PLN00012 chlorophyll synthetas 100.0 1.8E-32 4E-37 274.8 31.9 221 101-335 81-309 (375)
24 TIGR01476 chlor_syn_BchG bacte 100.0 9.1E-33 2E-37 268.9 27.0 222 106-340 1-223 (283)
25 PRK04375 protoheme IX farnesyl 100.0 8E-32 1.7E-36 263.9 31.6 268 101-391 6-279 (296)
26 PRK12869 ubiA protoheme IX far 100.0 1.9E-31 4E-36 259.2 32.0 266 104-392 1-271 (279)
27 TIGR02056 ChlG chlorophyll syn 100.0 6.3E-31 1.4E-35 258.6 31.0 228 100-340 11-245 (306)
28 TIGR01473 cyoE_ctaB protoheme 100.0 9.3E-31 2E-35 254.5 31.1 268 106-393 1-273 (280)
29 PRK12883 ubiA prenyltransferas 100.0 1E-30 2.2E-35 253.8 30.2 204 104-329 2-205 (277)
30 PRK13595 ubiA prenyltransferas 100.0 5.2E-30 1.1E-34 247.7 29.9 264 102-395 9-276 (292)
31 PRK05951 ubiA prenyltransferas 100.0 1.1E-29 2.4E-34 248.8 30.9 267 104-386 3-278 (296)
32 PRK13362 protoheme IX farnesyl 100.0 2.6E-29 5.5E-34 246.8 32.3 268 102-392 10-285 (306)
33 PRK06080 1,4-dihydroxy-2-napht 100.0 5.8E-29 1.3E-33 243.3 30.8 230 104-349 2-239 (293)
34 PRK12871 ubiA prenyltransferas 100.0 7.6E-28 1.6E-32 235.4 30.8 269 103-395 3-290 (297)
35 KOG1381 Para-hydroxybenzoate-p 100.0 6.1E-30 1.3E-34 238.6 13.7 273 96-392 55-335 (353)
36 PRK13387 1,4-dihydroxy-2-napht 100.0 4.1E-27 8.8E-32 232.4 30.2 231 104-349 2-260 (317)
37 PRK13105 ubiA prenyltransferas 99.9 7.7E-26 1.7E-30 219.2 27.1 218 105-342 1-224 (282)
38 PLN02776 prenyltransferase 99.9 1.5E-25 3.3E-30 221.2 29.7 260 111-393 1-266 (341)
39 TIGR00751 menA 1,4-dihydroxy-2 99.9 3.4E-25 7.3E-30 215.5 29.1 222 113-349 1-235 (284)
40 PLN02922 prenyltransferase 99.9 6.5E-25 1.4E-29 216.2 31.3 239 102-349 12-259 (315)
41 PF01040 UbiA: UbiA prenyltran 99.9 1.1E-25 2.5E-30 214.3 24.5 188 120-325 4-193 (257)
42 PRK07419 1,4-dihydroxy-2-napht 99.9 8.2E-25 1.8E-29 214.4 30.5 233 100-349 7-245 (304)
43 PRK12872 ubiA prenyltransferas 99.9 3E-25 6.4E-30 216.2 25.9 223 104-344 3-227 (285)
44 PRK12875 ubiA prenyltransferas 99.9 1E-24 2.2E-29 211.7 28.6 221 101-342 4-229 (282)
45 PRK08238 hypothetical protein; 99.9 8.2E-26 1.8E-30 233.9 21.8 222 63-311 153-377 (479)
46 TIGR02235 menA_cyano-plnt 1,4- 99.9 2.1E-23 4.6E-28 203.0 31.3 223 108-349 2-232 (285)
47 COG1575 MenA 1,4-dihydroxy-2-n 99.9 2.9E-23 6.2E-28 200.0 29.0 231 104-349 7-247 (303)
48 COG0109 CyoE Polyprenyltransfe 99.9 7.8E-24 1.7E-28 203.4 22.6 268 101-391 14-287 (304)
49 PRK13591 ubiA prenyltransferas 99.9 8.8E-23 1.9E-27 198.4 26.7 175 153-344 67-245 (307)
50 PRK13592 ubiA prenyltransferas 99.9 1.7E-22 3.7E-27 194.8 25.6 176 145-335 47-230 (299)
51 PRK12324 phosphoribose diphosp 99.9 1E-21 2.3E-26 191.5 19.6 143 101-253 7-151 (295)
52 KOG1380 Heme A farnesyltransfe 99.3 1.9E-12 4.1E-17 124.5 8.2 208 101-331 90-305 (409)
53 KOG4581 Predicted membrane pro 99.2 3E-11 6.4E-16 111.4 6.1 231 101-346 57-297 (359)
54 COG1575 MenA 1,4-dihydroxy-2-n 90.2 0.99 2.1E-05 44.5 7.3 44 149-194 181-224 (303)
55 PRK13591 ubiA prenyltransferas 86.7 2.5 5.4E-05 41.9 7.6 24 162-185 197-221 (307)
56 PLN02922 prenyltransferase 86.4 3.2 6.9E-05 41.3 8.3 40 153-195 197-237 (315)
57 PRK13387 1,4-dihydroxy-2-napht 86.3 2.7 5.9E-05 41.8 7.8 46 151-199 196-242 (317)
58 PRK07419 1,4-dihydroxy-2-napht 85.6 3.6 7.9E-05 40.7 8.2 38 154-194 184-222 (304)
59 PRK12872 ubiA prenyltransferas 85.0 4.4 9.6E-05 39.2 8.5 31 155-185 172-203 (285)
60 TIGR01474 ubiA_proteo 4-hydrox 83.5 10 0.00022 37.0 10.3 35 151-185 167-202 (281)
61 TIGR02056 ChlG chlorophyll syn 83.4 9.6 0.00021 37.7 10.2 43 288-331 64-109 (306)
62 PLN00012 chlorophyll synthetas 83.4 5.7 0.00012 40.6 8.7 32 154-185 262-294 (375)
63 PF01040 UbiA: UbiA prenyltran 82.0 22 0.00047 33.3 11.7 34 289-322 34-68 (257)
64 PRK07566 bacteriochlorophyll/c 81.8 5.7 0.00012 39.4 7.9 31 155-185 200-231 (314)
65 PRK12875 ubiA prenyltransferas 81.7 31 0.00068 33.7 12.9 51 153-206 174-225 (282)
66 PRK13105 ubiA prenyltransferas 81.1 8.1 0.00018 37.9 8.5 55 153-210 169-224 (282)
67 PRK12884 ubiA prenyltransferas 80.2 8.9 0.00019 37.1 8.5 32 288-320 47-78 (279)
68 PRK12392 bacteriochlorophyll c 80.0 5.9 0.00013 39.7 7.3 33 153-185 189-222 (331)
69 TIGR02235 menA_cyano-plnt 1,4- 79.8 8.3 0.00018 37.8 8.2 43 154-199 171-214 (285)
70 PRK06080 1,4-dihydroxy-2-napht 79.0 9.9 0.00021 37.1 8.5 45 153-200 177-222 (293)
71 TIGR01475 ubiA_other putative 78.7 11 0.00024 36.6 8.7 34 152-185 166-200 (282)
72 TIGR01476 chlor_syn_BchG bacte 78.4 9.7 0.00021 37.0 8.2 31 155-185 172-203 (283)
73 COG0382 UbiA 4-hydroxybenzoate 77.2 25 0.00054 34.3 10.7 34 287-320 56-90 (289)
74 PRK12847 ubiA 4-hydroxybenzoat 75.8 13 0.00027 36.3 8.1 34 152-185 173-207 (285)
75 PRK13592 ubiA prenyltransferas 75.6 25 0.00054 34.8 10.0 43 287-330 55-100 (299)
76 PRK12886 ubiA prenyltransferas 75.5 9.4 0.0002 37.5 7.1 32 154-185 172-204 (291)
77 TIGR00751 menA 1,4-dihydroxy-2 74.9 12 0.00027 36.6 7.8 40 154-196 174-214 (284)
78 PRK12324 phosphoribose diphosp 73.1 16 0.00035 36.0 8.2 37 291-327 59-99 (295)
79 PLN02809 4-hydroxybenzoate non 72.9 38 0.00082 33.3 10.7 32 289-320 56-88 (289)
80 PRK12888 ubiA prenyltransferas 70.5 18 0.00039 35.4 7.8 34 152-185 167-201 (284)
81 PRK12871 ubiA prenyltransferas 70.4 22 0.00047 35.1 8.3 34 152-185 183-217 (297)
82 PRK04214 rbn ribonuclease BN/u 70.3 62 0.0013 33.3 12.1 20 152-171 113-132 (412)
83 PRK12883 ubiA prenyltransferas 69.9 17 0.00037 35.1 7.5 29 157-185 167-196 (277)
84 PRK12848 ubiA 4-hydroxybenzoat 68.8 29 0.00064 33.7 8.9 36 150-185 168-204 (282)
85 PRK12870 ubiA 4-hydroxybenzoat 68.7 43 0.00094 32.8 10.1 31 290-320 58-89 (290)
86 PRK09573 (S)-2,3-di-O-geranylg 68.7 26 0.00056 34.0 8.4 42 287-329 46-90 (279)
87 PRK13106 ubiA prenyltransferas 67.3 19 0.00041 35.6 7.2 33 152-184 185-218 (300)
88 PRK12887 ubiA tocopherol phyty 66.7 31 0.00067 34.2 8.6 24 296-320 71-94 (308)
89 PRK12882 ubiA prenyltransferas 65.2 28 0.00061 33.6 7.9 38 289-327 49-89 (276)
90 PRK12873 ubiA prenyltransferas 64.2 41 0.0009 33.1 8.9 32 289-320 55-87 (294)
91 PRK12869 ubiA protoheme IX far 63.4 57 0.0012 31.7 9.7 41 287-327 45-89 (279)
92 PRK12874 ubiA prenyltransferas 62.3 21 0.00046 35.0 6.5 34 152-185 175-209 (291)
93 PRK12878 ubiA 4-hydroxybenzoat 60.1 90 0.002 31.0 10.6 32 154-185 202-234 (314)
94 PRK05951 ubiA prenyltransferas 58.4 49 0.0011 32.4 8.3 34 155-191 182-216 (296)
95 COG1295 Rbn Ribonuclease BN fa 55.6 2E+02 0.0043 28.3 12.1 28 221-249 201-230 (303)
96 PRK13595 ubiA prenyltransferas 54.7 86 0.0019 30.9 9.2 34 292-326 61-97 (292)
97 PRK12876 ubiA prenyltransferas 52.9 1.4E+02 0.0031 29.5 10.4 29 292-320 61-90 (300)
98 PRK08238 hypothetical protein; 49.9 61 0.0013 34.2 7.8 41 289-329 237-281 (479)
99 PRK13362 protoheme IX farnesyl 49.6 1.6E+02 0.0035 29.1 10.4 41 287-327 56-100 (306)
100 PLN02878 homogentisate phytylt 49.1 68 0.0015 31.5 7.4 41 154-197 166-207 (280)
101 TIGR01473 cyoE_ctaB protoheme 48.2 82 0.0018 30.5 8.0 39 289-327 46-88 (280)
102 PRK12895 ubiA prenyltransferas 47.7 1.4E+02 0.003 29.3 9.5 20 291-310 50-69 (286)
103 PRK04375 protoheme IX farnesyl 44.2 2.2E+02 0.0048 27.8 10.4 38 290-327 56-97 (296)
104 PRK11383 hypothetical protein; 44.1 2.3E+02 0.0049 25.0 10.4 15 292-306 117-131 (145)
105 PLN02776 prenyltransferase 40.4 1.5E+02 0.0032 30.0 8.5 41 287-327 38-82 (341)
106 PF09928 DUF2160: Predicted sm 38.0 2.1E+02 0.0046 23.0 7.8 53 292-349 19-71 (88)
107 PF04341 DUF485: Protein of un 36.5 2.2E+02 0.0048 22.7 7.7 38 138-175 52-89 (91)
108 COG0142 IspA Geranylgeranyl py 27.5 99 0.0022 30.7 4.9 41 297-338 85-125 (322)
109 PRK01637 hypothetical protein; 27.1 5.8E+02 0.013 24.6 13.1 22 152-173 105-126 (286)
110 PRK10581 geranyltranstransfera 23.7 71 0.0015 31.5 3.0 39 290-328 215-264 (299)
111 PF11990 DUF3487: Protein of u 22.6 3.3E+02 0.0071 23.2 6.5 40 171-212 8-51 (121)
112 PF10777 YlaC: Inner membrane 22.1 1.1E+02 0.0023 27.3 3.4 25 295-319 116-140 (155)
113 PF00348 polyprenyl_synt: Poly 20.8 3.5E+02 0.0076 25.7 7.2 47 292-339 47-93 (260)
114 PF06645 SPC12: Microsomal sig 20.7 3.1E+02 0.0068 21.2 5.5 45 319-363 5-50 (76)
No 1
>PLN02878 homogentisate phytyltransferase
Probab=100.00 E-value=2.4e-55 Score=418.92 Aligned_cols=274 Identities=58% Similarity=1.029 Sum_probs=250.9
Q ss_pred HHcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCCCCCcccccccChHHHHHHHHHHHHHHHHHHH
Q 015718 128 SLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAV 207 (402)
Q Consensus 128 ~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~nk~~RPlasG~is~~~a~~~~~~~~~~~l~la~ 207 (402)
+++|.+..+|.++.++.+++.++++.++++.+...+||++|+|+||+|||+||+|||++|+++|+.+...+.++|+.+++
T Consensus 7 ~l~a~~~~~~~~~~~~~~~l~~~~~~l~~niyivglNd~~D~EIDkINkP~rPIpSG~iS~~~a~~~~~~~~~lg~~la~ 86 (280)
T PLN02878 7 SLLAVESLSDFSPLFFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPLASGEFSVATGVAIVTSFAIMSFGMGW 86 (280)
T ss_pred hHHHhhccccccHHHHHHHHHHHHHHHhhhhheechhhhhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 46666666676666777888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhhHHhHHHHHHHHHHHHhcCCCccCcHHHHHHHHHH
Q 015718 208 MIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFI 287 (402)
Q Consensus 208 ~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g~l~~lg~~~~~~~~v~g~~~~~~~~~~~~l~~~~ 287 (402)
.+|++++.+++..+++++++||.++||+|+||+++++..+....+++...+|+|.|++++++|++ ..++.+.++..+++
T Consensus 87 ~~g~~~l~~al~~~~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~-~~~~~~~~~~~~f~ 165 (280)
T PLN02878 87 IVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRP-AVFTRPLIFATAFM 165 (280)
T ss_pred HHChHHHHHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCc-cccchhHHHHHHHH
Confidence 99988888777778789999998889999999999999888888888889999999999998865 34455666666678
Q ss_pred HHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHH
Q 015718 288 SCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWL 367 (402)
Q Consensus 288 ~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~~a~~~~i~~g~~~~~~~~~~~~~~g~~i~a~~l~~ 367 (402)
+++..+++++||++|+|||++.|++|+|+++|++++.+++..++.++|+..+++|..++..|+++++.+||++++..+++
T Consensus 166 ~~f~~~i~i~KDi~DieGD~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~~~i~~g~~~~~~~~~~~~~~~h~~l~~~L~~ 245 (280)
T PLN02878 166 CFFSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGILASILWQ 245 (280)
T ss_pred HHHHHHHHHHhhCcCchhHHHCCCceechhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999999999999999999999999899999999889999999999999999999
Q ss_pred HHHHcCCCChHHHHHHHHHHHHHHHHHHhccccCC
Q 015718 368 RVRAVDLSDNASILSFYMFIWKLYYAEYLLIPFVR 402 (402)
Q Consensus 368 ~~~~~d~~~~~~~~~f~~~iw~l~~~ey~~~~~~~ 402 (402)
|.+++|.+++++..+|||||||+||+||+++|++|
T Consensus 246 rs~~vD~~sk~~i~~fY~fiwklfy~ey~l~p~~~ 280 (280)
T PLN02878 246 RAQSVDLSSKAAITSFYMFIWKLFYAEYFLIPLVR 280 (280)
T ss_pred HhHhcCcccHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999987
No 2
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=100.00 E-value=1.5e-52 Score=411.57 Aligned_cols=304 Identities=32% Similarity=0.577 Sum_probs=253.2
Q ss_pred chhHHHHhHHHHHHHHHHHchhhhHHHHHHHHHHHHcccccCCCC-chHHHHHHHHHHHHHHHHHHHHHHhhcccCcccc
Q 015718 94 SNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADL-TPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVD 172 (402)
Q Consensus 94 ~~~~~~~~~~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~-~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~D 172 (402)
|++.+++..+.+++|+|++|||+.+++.++++.+.+++.....+. +...+...+.++++....+.+++.+||++|+|+|
T Consensus 2 ~~~~~~~~~~~l~~~~~l~Rp~t~igt~l~~~~~~l~a~~~~~~~~~~~~~~~~l~~~~~~~~~nv~i~~iNd~~D~~iD 81 (308)
T PRK12887 2 PKNPLQPMTSWLYALWKFSRPHTIIGTSLSVLGLYLIAIAASSNTIALANLGLLLGAWIACLCGNVYIVGLNQLTDIEID 81 (308)
T ss_pred CcchhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 456678888899999999999999999999987777653322221 1112333444555556666666669999999999
Q ss_pred ccCCCCCcccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhh
Q 015718 173 KVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLN 252 (402)
Q Consensus 173 r~nk~~RPlasG~is~~~a~~~~~~~~~~~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~ 252 (402)
++|||+||++||++|+++++.+..++.++++.+++..|++.+ +..+++.+++++||. ||+|+||+++.++++++..+
T Consensus 82 ~inkp~rPiasG~ls~~~a~~~~~~~~~lal~la~~~~~~~~-~~~~~~~~lg~~Ys~--pP~rlKr~~~~~~~~i~~~~ 158 (308)
T PRK12887 82 RINKPHLPLAAGEFSRRQGQRIVIITGILALILAALLGPWLL-ITVGISLLIGTAYSL--PPIRLKRFPLLAALCIFTVR 158 (308)
T ss_pred hcCCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHcC--CchhhcccchhHHHHHHHHH
Confidence 999999999999999999999999999999999999986554 445678888999995 99999999999999888888
Q ss_pred hHHhHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHH
Q 015718 253 GLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLS 332 (402)
Q Consensus 253 g~l~~lg~~~~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~ 332 (402)
|.++.+|.+.+......+. ..++...+++.+++++|+.+++++||++|+|||++.|+||+|+++|+|++.+++..++.
T Consensus 159 g~i~~~g~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~~l~~~ll~ 236 (308)
T PRK12887 159 GVIVNLGLFLHFQWLLGGS--VLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLT 236 (308)
T ss_pred HHHHHHHHHHHHHHHHhcc--ccCcHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcchhHHHhHHHHHHHHHHHHH
Confidence 8887778766533322222 13455566777788899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHhccccCC
Q 015718 333 IAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKLYYAEYLLIPFVR 402 (402)
Q Consensus 333 ~a~~~~i~~g~~~~~~~~~~~~~~g~~i~a~~l~~~~~~~d~~~~~~~~~f~~~iw~l~~~ey~~~~~~~ 402 (402)
++|+..+..+......+...++.+||++.+..++||.+++|.+|+++.++|||||||+||+||+++|+.|
T Consensus 237 ~~y~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~iw~l~~~ey~~~~~~~ 306 (308)
T PRK12887 237 ACYLGMIAVGLLSLPTVNPAFLIVSHLILLALLWWRSQRVDLQDKQAIAQFYQFIWKLFFLEYLLFPIAC 306 (308)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888888777777776777799999999999999999999999999999999999999999999865
No 3
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=8e-36 Score=289.52 Aligned_cols=259 Identities=16% Similarity=0.132 Sum_probs=202.2
Q ss_pred HHHHHHHHHchhhhHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCC--CCCcc
Q 015718 104 KFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--PYLPL 181 (402)
Q Consensus 104 ~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~nk--~~RPl 181 (402)
++|+|.|++||+....+....+.|.++|.+..++ +. .+++.+++.+++++++|++||+.|+|+|++|+ |+||+
T Consensus 2 ~~~~~~el~k~~~t~~al~~a~~g~~lA~~~~~~--~~---~l~l~~~~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPL 76 (286)
T PRK12895 2 NFRDIVDYIKLEHTVFDLPFILAGYVIAAGHYIH--PI---KILLILIAAVSARTSAMSINRIEGLRYDMINPRKKDWAL 76 (286)
T ss_pred cHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCCC--HH---HHHHHHHHHHHHHHHHHHHHhHHHhcccCCCCcCCCCCC
Confidence 4788999999987777766666788887543222 21 24456678889999999999999999999995 59999
Q ss_pred cccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhhHHhHHHHH
Q 015718 182 ASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVY 261 (402)
Q Consensus 182 asG~is~~~a~~~~~~~~~~~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g~l~~lg~~ 261 (402)
|+|++|+++|+.+..++.++++.+++.+|+.++.++ ...+.+...|++ +||++.++++.++...|..+..|+
T Consensus 77 psG~is~~~A~~~~~~~~~~~~~~~~~ln~l~~~l~-~~~~~l~~~yp~------~KR~t~~~~~~lG~~~g~~~l~g~- 148 (286)
T PRK12895 77 VSGRIKMREAIAFTIIFIAIFEICTFLLNRLVFILS-PIVIFLFIIDPF------LKRYTAWRHIYMGSIIGLGVLAGY- 148 (286)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH------HHhCccccHHHHHHHHHhHHHHHH-
Confidence 999999999999999999999999999998776654 344555566774 899999999888766554333332
Q ss_pred HHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHHHHHHHHHHH
Q 015718 262 VHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVV 341 (402)
Q Consensus 262 ~~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~~a~~~~i~~ 341 (402)
.++.|+. ......+++++...+|+.++|++|++||+|+|++.|+||+|+++|++++.++...++.++..+....
T Consensus 149 ----~Av~g~~--~~~~~~~~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~~~~~~i~~~~~~~~~~~~~~~ 222 (286)
T PRK12895 149 ----LAVIPAF--PYNLLIYIIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIKNGLYISDIFHISSLILFWIS 222 (286)
T ss_pred ----HHHcCCC--CchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCCccHHHHHHHHHHHHHHHHHHH
Confidence 3344442 1222345667788999999999999999999999999999999999988877666777777777777
Q ss_pred HHhcCcchHHHHHHHHHHHHHHHHHHHHHHcCCCChHHH-HHHHH
Q 015718 342 GASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASI-LSFYM 385 (402)
Q Consensus 342 g~~~~~~~~~~~~~~g~~i~a~~l~~~~~~~d~~~~~~~-~~f~~ 385 (402)
|.... ++ .|+++.++.+..+.||++.+|++|+++| ..||.
T Consensus 223 g~~~~-~~---~y~~~~~~~~~~l~~q~~~~~~~~~~~~~~~~F~ 263 (286)
T PRK12895 223 GIYIR-TL---WYLAALIIIYTLVIYQHLIIDPRNPINKRMSFFN 263 (286)
T ss_pred HHHHh-hH---HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 76654 33 5678899999999999999999999988 66554
No 4
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=8.9e-36 Score=291.35 Aligned_cols=277 Identities=16% Similarity=0.175 Sum_probs=212.6
Q ss_pred HHhHHHHHHHHHHHchhhhHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCC--
Q 015718 99 NVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK-- 176 (402)
Q Consensus 99 ~~~~~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~nk-- 176 (402)
...++++++|+|++||++.+....+.+.|.++|.+..++ +. .+++.+++.+++++++|++||++|+|+|++|+
T Consensus 9 ~~~~~~l~~yl~L~R~~~~~~~l~~~~~g~~la~~~~~~--~~---~l~l~~lg~~l~~~a~~~~Nd~~D~diD~~~~RT 83 (300)
T PRK13106 9 NNTRSKFYIILRFLRIEQTFFSLPMAYLGAFVAIKGIPP--IS---TLILIFLALFFLRTAGMTNDNLADLEIDAKNPRT 83 (300)
T ss_pred hhhHHHHHHHHHHHccccHHHHHHHHHHHHHHHcCCCCC--HH---HHHHHHHHHHHHHHHHHHHHhhHHhccccCCCcc
Confidence 346678999999999999999888788888888654333 22 24567789999999999999999999999985
Q ss_pred CCCcccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhhHHh
Q 015718 177 PYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLT 256 (402)
Q Consensus 177 ~~RPlasG~is~~~a~~~~~~~~~~~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g~l~ 256 (402)
|+||+|+|++|+++++.+..++.+.++.++..+|+.+..+.. +..++...|++ +||++.++++.+++..+..+
T Consensus 84 ~~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~ln~~~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~~lg~~~~~~~ 156 (300)
T PRK13106 84 KNRPLVTGAIKISEAKALITAGLILFFASAYLVNRWALLLSP-IVALIAMSYPY------MKRYTAFANYHLASIQGLAV 156 (300)
T ss_pred CCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhH------HhcCCcchHHHHHHHHHHHH
Confidence 589999999999999999877777777777888876665543 44455678984 79999999998877655444
Q ss_pred HHHHHHHHHHHHhcCCCc----cCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHH
Q 015718 257 QFPVYVHIQKYVLGRPLE----IFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLS 332 (402)
Q Consensus 257 ~lg~~~~~~~~v~g~~~~----~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~ 332 (402)
..|+. ++.|.... ..+...+++.+..++|+.++|++|++||+|+|++.|+||+|+++| +++++++..++.
T Consensus 157 ~~G~~-----a~~g~~~~~~~~~l~~~~~~l~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G-~~a~~~~~~~~~ 230 (300)
T PRK13106 157 FSGAV-----AVLGLYANSLIQVLLRVPWLFVIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG-KWALTFAGLNQL 230 (300)
T ss_pred HHHHH-----HHcCCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh-hhHHHHHHHHHH
Confidence 44432 23342100 012233455567889999999999999999999999999999999 778888877887
Q ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH------HHHHHHHHHhc
Q 015718 333 IAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMF------IWKLYYAEYLL 397 (402)
Q Consensus 333 ~a~~~~i~~g~~~~~~~~~~~~~~g~~i~a~~l~~~~~~~d~~~~~~~~~f~~~------iw~l~~~ey~~ 397 (402)
++..+....|+...+++ .|.++..+....+.+|+..+|.+ +++.+.|..+ ++.++.+++++
T Consensus 231 ~~v~l~~~~~~~~~lg~---~y~~~~~~~~~~l~~~~~~~~~~-~~~~~~F~~n~~ig~~~~~~~~~~~~~ 297 (300)
T PRK13106 231 FSVVLDLLGDLYYGLGP---IAIAATILHGLIMAYAYYLASKK-GDFGRAFYYNIYSSIVLGLGIIIDVLL 297 (300)
T ss_pred HHHHHHHHHHHHhCCcH---HHHHHHHHHHHHHHHHHHHhCCc-hHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 77778888888777776 56678888888999999999877 5566777665 44555555543
No 5
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=100.00 E-value=1.5e-35 Score=289.18 Aligned_cols=265 Identities=17% Similarity=0.205 Sum_probs=203.7
Q ss_pred hHHHHHHHHHHHchhhhHHHH---HHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCCC
Q 015718 101 FLKKFHALYRFMRAYACAGVI---IATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKP 177 (402)
Q Consensus 101 ~~~~l~~~~~l~Rp~~~~~~~---l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~nk~ 177 (402)
.++++++|+|++||+++.+.. +|.+.|.++|.+..++ +. .+++++++.+++++++|++||++|+|+|++++|
T Consensus 5 ~~~~~~~y~~L~R~~kp~~~~l~~~~~~~g~~lA~~~~~~--~~---~~~l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~R 79 (290)
T PRK12870 5 LEPTWLAIIRLLRWDKPAGRLILMIPALWAVFLAAHGLPP--LP---LVGIIILGALATSAAGCVVNDLWDRDIDPQVER 79 (290)
T ss_pred cchhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHccCCCC--HH---HHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCc
Confidence 446789999999999987776 4667787787554333 22 144677888999999999999999999987554
Q ss_pred --CCcccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhhHH
Q 015718 178 --YLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLL 255 (402)
Q Consensus 178 --~RPlasG~is~~~a~~~~~~~~~~~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g~l 255 (402)
+||+|+|++|++++..++.++.++++.+++.+|+.++.+. +.+.++.+.||+ .||++.++++.+++..+..
T Consensus 80 t~~RPL~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~~lg~~~~~~ 152 (290)
T PRK12870 80 TRFRPLASRRLSVKVGIVIAIVALLCAAGLAFFLNPLSFWLC-VAAVPVIFLYPL------AKRVFPVPQLVLAIAWGFA 152 (290)
T ss_pred ccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHhhh------hhhccccceeeehHHHHhH
Confidence 8999999999999999999999999999998887766554 345556789985 6888888887776555543
Q ss_pred hHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHHHHH
Q 015718 256 TQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAY 335 (402)
Q Consensus 256 ~~lg~~~~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~~a~ 335 (402)
+..++ .++.|+ .+...+++.+..++|+.+++++++++|+|+|+++|+||+|+++|++++.++.. ++.+..
T Consensus 153 ~l~g~-----~a~~g~----~~~~~~~l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~~~~~-~~~~~~ 222 (290)
T PRK12870 153 VLISW-----SAVTGH----LDLGTWLLWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPEAIGL-FFALTV 222 (290)
T ss_pred HHHHH-----HHHcCC----CCHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccHHHHHH-HHHHHH
Confidence 33332 223454 34555667778899999999999999999999999999999999998887754 555566
Q ss_pred HHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHc--CCCChHHHHHHHH-HHHHH
Q 015718 336 GAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAV--DLSDNASILSFYM-FIWKL 390 (402)
Q Consensus 336 ~~~i~~g~~~~~~~~~~~~~~g~~i~a~~l~~~~~~~--d~~~~~~~~~f~~-~iw~l 390 (402)
.++...++....++ .|.++..+....+.+|+..+ |.+|++.|.+||. +.|.+
T Consensus 223 ~~l~~~~~~~~~~~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~F~~n~~~g 277 (290)
T PRK12870 223 GFLAILGVLLELHL---PFWIGLAIAAVLWARQYRRLRQANLPPLAYGQLFLQNVWIG 277 (290)
T ss_pred HHHHHHHHHhCCcH---HHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHhhHHH
Confidence 66667777777665 45567778888899999888 7778877766654 44443
No 6
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=100.00 E-value=5.2e-35 Score=284.82 Aligned_cols=259 Identities=19% Similarity=0.171 Sum_probs=200.7
Q ss_pred HHHHHHHHHHHchhhhHHHHH---HHHHHHHcccc-c-CCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCC
Q 015718 102 LKKFHALYRFMRAYACAGVII---ATTSNSLLPVQ-T-LADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK 176 (402)
Q Consensus 102 ~~~l~~~~~l~Rp~~~~~~~l---~~l~g~llA~~-~-~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~nk 176 (402)
++++++|+|++|.++..+..+ |+..+..++.. + .++ +. .+++.+++..++++++|++||++|+|+|++|+
T Consensus 3 ~~~~~~y~~L~Rl~kp~~~~l~~~p~~~~~~l~a~~~~~~~--~~---~l~l~~~g~~~~~~a~~~~Nd~~Dr~iD~~~~ 77 (289)
T PLN02809 3 PPSLRPYAKLARLDKPIGTWLLAWPCMWSIALAAPPGSLPD--LK---MLALFGCGALLLRGAGCTINDLLDRDIDKKVE 77 (289)
T ss_pred chhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccCCCCc--HH---HHHHHHHHHHHHHHHHHHHHhhHHhccccCCC
Confidence 467899999999998877655 44555555532 2 222 22 24567788899999999999999999999876
Q ss_pred --CCCcccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhhH
Q 015718 177 --PYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGL 254 (402)
Q Consensus 177 --~~RPlasG~is~~~a~~~~~~~~~~~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g~ 254 (402)
|+||+|+|++|+++++.+..++.++++.+++.+|+..+... .+++++...||. +||++.++++..++..+.
T Consensus 78 RT~~RPL~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~~lg~~~~~ 150 (289)
T PLN02809 78 RTKLRPIASGALTPFQGVGFLGAQLLLGLGILLQLNNYSRILG-ASSLLLVFTYPL------MKRFTFWPQAFLGLTFNW 150 (289)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHhH------HHhcCcchHHHHHHHHHH
Confidence 49999999999999999999999999999988887666554 455666789985 899999998877654443
Q ss_pred HhHHHHHHHHHHHHhcCCCccCcHHHH-HHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHHH
Q 015718 255 LTQFPVYVHIQKYVLGRPLEIFTRPLM-FATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSI 333 (402)
Q Consensus 255 l~~lg~~~~~~~~v~g~~~~~~~~~~~-~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~~ 333 (402)
.+..|+ .++.|+. +.... .++....+|+.+++++++++|+|+|++.|+||+|+++|++...++. .+..+
T Consensus 151 ~~l~g~-----~av~g~~----~~~~~~~l~~~~~~W~~~~d~~ya~~D~e~D~~~Gi~sl~v~~G~~~~~~i~-~~~~~ 220 (289)
T PLN02809 151 GALLGW-----AAVKGSL----DPAVVLPLYASGVCWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDDTKLWLT-GFGAA 220 (289)
T ss_pred HHHHHH-----HHHhCCC----ChHHHHHHHHHHHHHHHHHHHHHHHhchhhHHhCCCcccchhhcHHHHHHHH-HHHHH
Confidence 333332 3344542 33333 3666778899999999999999999999999999999999666665 56666
Q ss_pred HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Q 015718 334 AYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYM 385 (402)
Q Consensus 334 a~~~~i~~g~~~~~~~~~~~~~~g~~i~a~~l~~~~~~~d~~~~~~~~~f~~ 385 (402)
.+..+...|.....++ .|.+++++.+..+.+|++.+|++|+++|.++|.
T Consensus 221 ~~~~l~~~g~~~~~~~---~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~F~ 269 (289)
T PLN02809 221 SIGGLALSGYNAGLGW---PYYAGLAAAAGHLAWQIQTVDLSSRADCNRKFV 269 (289)
T ss_pred HHHHHHHHHHHhcCcH---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 7777777887777665 445688888889999999999999998866654
No 7
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=100.00 E-value=3.8e-35 Score=285.52 Aligned_cols=260 Identities=19% Similarity=0.221 Sum_probs=202.4
Q ss_pred HHHHHHHHchhhhHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccC--CCCCccc
Q 015718 105 FHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVN--KPYLPLA 182 (402)
Q Consensus 105 l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~n--k~~RPla 182 (402)
+|+|+|++||++...+.+....|.++|....++ +. ..++++++.+++++++|++||+.|+|+|++| +|+||+|
T Consensus 2 ~~~~~~L~r~~~~~~~~~~~~~g~~la~~~~~~--~~---~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl~ 76 (282)
T TIGR01475 2 FKDILELIKFEHTVFALPFAYAGALLAAKGLPG--LK---TLILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPLV 76 (282)
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHhcCCCCC--HH---HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCCC
Confidence 678999999999988877666788887544333 22 2456778999999999999999999999998 6799999
Q ss_pred ccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhhHHhHHHHHH
Q 015718 183 SGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYV 262 (402)
Q Consensus 183 sG~is~~~a~~~~~~~~~~~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g~l~~lg~~~ 262 (402)
+|++|++++..++.++.++++.++..+|+++..+. ..+.++.+.|+. +||++.++++..+...+..+..|+.
T Consensus 77 sG~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~~~~g~~- 148 (282)
T TIGR01475 77 SGLISKKEARTMIILSLALFLSASYFLNPLAFILS-PLVLLVLIIYPY------TKRFTFLCHYVLGSTYGLAPLAGWV- 148 (282)
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHhh------HhccccccHHHHHHHHHHHHHHHHH-
Confidence 99999999999998888888888888887665444 344555788984 7999999998877655544433332
Q ss_pred HHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHHHHHHHHHHHH
Q 015718 263 HIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVG 342 (402)
Q Consensus 263 ~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~~a~~~~i~~g 342 (402)
++.|.. ......+++.+..++|+.+++++||++|+|+|++.|+||+|+++|+|+++++......+++.+....+
T Consensus 149 ----a~~g~~--~~~~~~~ll~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~ 222 (282)
T TIGR01475 149 ----AVIGTI--SFFLVAWLLGIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGIKAALKIASLSHVITFILLLLVG 222 (282)
T ss_pred ----HHhCCc--cchHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhchHHHHHHHHHHHHHHHHHHHHHH
Confidence 334442 11144556667788999999999999999999999999999999999999988777777777777777
Q ss_pred HhcCcchHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHH-HHHH
Q 015718 343 ASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILS-FYMF 386 (402)
Q Consensus 343 ~~~~~~~~~~~~~~g~~i~a~~l~~~~~~~d~~~~~~~~~-f~~~ 386 (402)
...+.++ .|.++..+....+.++.+..|.+|+++|++ |+..
T Consensus 223 ~~~~~g~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ff~~ 264 (282)
T TIGR01475 223 FYVGNGY---IALLALILIGLILAYEHYIVDPGDQSKIQRAFFYA 264 (282)
T ss_pred HHhhCcH---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 7766665 455666666777889999999999887765 5543
No 8
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=1.8e-34 Score=280.70 Aligned_cols=268 Identities=17% Similarity=0.157 Sum_probs=202.1
Q ss_pred HHHHHHHHchhhhHHHHHHHHHHHHccc---ccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCC--CCC
Q 015718 105 FHALYRFMRAYACAGVIIATTSNSLLPV---QTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--PYL 179 (402)
Q Consensus 105 l~~~~~l~Rp~~~~~~~l~~l~g~llA~---~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~nk--~~R 179 (402)
+++|+|++||++-+......+.+.+++. ++. +++. .+++.+++++++++++|++||++|+|+|++|+ |+|
T Consensus 2 ~~~~~~l~r~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~---~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~~R 76 (284)
T PRK12888 2 VRAFLRLVAIEHSVFALPFAYIAALTAMFASDGS--VHWA---DLLLVTVAMVGARTFAMAANRIIDREIDARNPRTAGR 76 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCHH---HHHHHHHHHHHHHHHHHHHHhHHhhCCCCCCCCCCCC
Confidence 6789999999655443222223333432 222 2222 24567889999999999999999999999998 589
Q ss_pred cccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhhHHhHHH
Q 015718 180 PLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFP 259 (402)
Q Consensus 180 PlasG~is~~~a~~~~~~~~~~~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g~l~~lg 259 (402)
|+|+|++|+++++.++.+++.+++.++..+|+.++... .+.++....|++ .||++.++++.+++..+..+..|
T Consensus 77 PL~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~l~-~~~~~~~~~Y~~------~Kr~t~~~~~~lg~~~~~~~l~g 149 (284)
T PRK12888 77 ELVTGAVSVRTAWTGALVALAVFLGAAALLNPLCLALA-PLAVAPLVVYPY------AKRFTNFPHAILGLAQAVGPVGA 149 (284)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH------hhcccchhhHHHHHHHHHHHHHH
Confidence 99999999999999988888888888888887666544 344455678985 79999989888776544333333
Q ss_pred HHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHHHHHHHHH
Q 015718 260 VYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAV 339 (402)
Q Consensus 260 ~~~~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~~a~~~~i 339 (402)
+ .++.|. .+...+++.+..++|+.+++++|++||+|+|++.|+||+|+++|+|++.++...+..+.+.+..
T Consensus 150 ~-----~a~~g~----~~~~~~ll~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ll~ 220 (284)
T PRK12888 150 W-----IAVTGT----WSWPAVLLGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVRAALWASRVAHVVTFALFV 220 (284)
T ss_pred H-----HHHcCC----CCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCchhHHHHHHHHHHHHHHHHH
Confidence 2 223444 3555667777889999999999999999999999999999999999999877677777777777
Q ss_pred HHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHH-HHH-HH------HHHHHHHHHh
Q 015718 340 VVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASIL-SFY-MF------IWKLYYAEYL 396 (402)
Q Consensus 340 ~~g~~~~~~~~~~~~~~g~~i~a~~l~~~~~~~d~~~~~~~~-~f~-~~------iw~l~~~ey~ 396 (402)
..+.....+| .|.++..+.+..+.||++.+|.+|++.|. .|| .+ ++.++.++++
T Consensus 221 ~~~~~~~~~~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ff~~n~~ig~~~~~~~~~~~~ 282 (284)
T PRK12888 221 WFGLAVGFGA---LWWIGLAITAGAFAYEHAIVSPTDLSRVNRAFFTANGFVGIALFGFALLDLL 282 (284)
T ss_pred HHHHHhCCcH---HHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 7787777777 45678888889999999999999988664 766 33 4555555543
No 9
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=3.7e-34 Score=279.32 Aligned_cols=263 Identities=18% Similarity=0.167 Sum_probs=201.3
Q ss_pred HHHHHHHHHHHchhhhHHHHHHHHHHHHcccccC---CCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCC--
Q 015718 102 LKKFHALYRFMRAYACAGVIIATTSNSLLPVQTL---ADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK-- 176 (402)
Q Consensus 102 ~~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~---~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~nk-- 176 (402)
++++++|+|++||++.+.+....+.|.++|.... ...++. .+++++++.+++++++|++||++|+|+|++|+
T Consensus 5 ~~~l~~y~~l~r~~~~~~~l~~a~~g~~la~~~~~~~~~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~DrdiD~~~~RT 81 (291)
T PRK12874 5 TKKLKDISELVVFKHSIFSLPFIFIAMIVASKQKNDTGWFGFK---LLILGILAAVSARNFAMAFNRLVDRDIDKDNPRT 81 (291)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhhhccCCCCCHH---HHHHHHHHHHHHHHHHHHHHhhhhhccccCCCCC
Confidence 4578999999999998888777777777764211 112222 25567788889999999999999999999997
Q ss_pred CCCcccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhhHHh
Q 015718 177 PYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLT 256 (402)
Q Consensus 177 ~~RPlasG~is~~~a~~~~~~~~~~~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g~l~ 256 (402)
|+||+|||++|+++++.++.++.++++.+++.+|+.+..+. +..+++...||+ +||++.++++..++..+..+
T Consensus 82 ~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~~~n~~~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~~~g~~~~~~~ 154 (291)
T PRK12874 82 ANRPSVDGRISVKSMVLFIVLNALIFIGVSYFINPLAFKLS-FPFLIVLGGYSY------FKRFSSLAHLVLGLSLGLAP 154 (291)
T ss_pred CCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHhh------hcccccccHHHHHHHHHHHH
Confidence 48999999999999999999888888888888887766554 445556789995 79999999988876655444
Q ss_pred HHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHHHHHH
Q 015718 257 QFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYG 336 (402)
Q Consensus 257 ~lg~~~~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~~a~~ 336 (402)
.+|+ .++.|+ .+...+++.+.+++|+.+++++|+++|+|+|+++|+||+|+++|++++.++......+...
T Consensus 155 l~G~-----~av~g~----~~~~~~~l~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~~~~~~~~~~~~~~~~~ 225 (291)
T PRK12874 155 IAGV-----VAVLGE----IPLWSVFLALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEKATLFISRLFHLLAVL 225 (291)
T ss_pred HHHH-----HHHcCC----CcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhhHhHHHHHHHHHHHHHH
Confidence 4443 234454 3444566667788999999999999999999999999999999999988876555554444
Q ss_pred HHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Q 015718 337 AAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMF 386 (402)
Q Consensus 337 ~~i~~g~~~~~~~~~~~~~~g~~i~a~~l~~~~~~~d~~~~~~~~~f~~~ 386 (402)
.....+.....++ +++++..+.+..+.++.+.++.+|++.++.||..
T Consensus 226 ~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ff~s 272 (291)
T PRK12874 226 FWLLFVWCAHLGL---FAYLGVIVSALILLYEHYLVRKDFKKIDKAFFTL 272 (291)
T ss_pred HHHHHHHHhcchH---HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 4455554444444 4556777777888899888877777778887654
No 10
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=1.5e-34 Score=280.94 Aligned_cols=267 Identities=15% Similarity=0.045 Sum_probs=203.6
Q ss_pred HHHHHHHHHHHchhhhHHHHHHH---HHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCCC-
Q 015718 102 LKKFHALYRFMRAYACAGVIIAT---TSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKP- 177 (402)
Q Consensus 102 ~~~l~~~~~l~Rp~~~~~~~l~~---l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~nk~- 177 (402)
++++++|+|++||+++.++.+.+ +.|.+++.+..++ .. ..++++++..++++++|++||+.|+|+|++|+|
T Consensus 4 ~~~~~~y~~L~R~~Kp~~~~ll~~p~~~g~~la~~~~~~--~~---~~~~~~~g~~l~~~a~~~~Nd~~D~~iD~~~~RT 78 (294)
T PRK12873 4 SIKLSPWFELLRWNKPTGRLILLIPAGWSLWLTPSAPPS--LL---LLLLIILGGLAVSGAGCIANDLWDRRIDRKVERT 78 (294)
T ss_pred hHhHHHHHHHhCccccchHHHHHHHHHHHHHHccCCCCC--HH---HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcC
Confidence 34688999999999999887744 4566666433222 11 255678899999999999999999999999765
Q ss_pred -CCcccccccChHHHHHHHHHHHHHHHHHHHHh----chHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhh
Q 015718 178 -YLPLASGEISMGTGIAITLASALMSLAYAVMI----RSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLN 252 (402)
Q Consensus 178 -~RPlasG~is~~~a~~~~~~~~~~~l~la~~l----~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~ 252 (402)
+||+|+|++|+++|+.++.++.++++.+.+.+ |+.++.++ +..++....||+ +||++...++..++..
T Consensus 79 ~~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~n~l~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~vlg~~~ 151 (294)
T PRK12873 79 KNRPLARGKISLKTAYSLLIVLLLLSLFVVLSLPQPSRNLCLSLA-FLALPPILIYPS------AKRWFAYPQAILALCW 151 (294)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHH-HHHHHHHHHHHH------HHhccccchHHHHHHH
Confidence 99999999999999999999999998887665 44455444 344556788995 7999988888776654
Q ss_pred hHHhHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHH
Q 015718 253 GLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLS 332 (402)
Q Consensus 253 g~l~~lg~~~~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~ 332 (402)
+..+..|+ .++.|+. ......+++++.+++|+.+++++++++|+|+|+++|++|+|+++|++. ......++.
T Consensus 152 a~~~l~gw-----~Av~g~~--~~~~~~l~l~~~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~~~-~~~~~~~~~ 223 (294)
T PRK12873 152 GFAVLIPW-----AAAEGSL--NGGWPLLFCWLATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGSNA-LKTVQICYF 223 (294)
T ss_pred HhHHHHHH-----HHHhCCC--chhHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcChhh-HHHHHHHHH
Confidence 43333332 3455653 222233445577899999999999999999999999999999999864 444457777
Q ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHcCCCC--hHHH-HHHHHHHHHHH
Q 015718 333 IAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSD--NASI-LSFYMFIWKLY 391 (402)
Q Consensus 333 ~a~~~~i~~g~~~~~~~~~~~~~~g~~i~a~~l~~~~~~~d~~~--~~~~-~~f~~~iw~l~ 391 (402)
+...++...|...+.++ .|.++.++.+..+.+|++.+|.+| +++| +.|..+.|.++
T Consensus 224 ~~~~ll~~~g~~~~l~~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~c~~~F~~n~~~G~ 282 (294)
T PRK12873 224 LTSIFLALAAFIAQVGF---IFWPFWLIASIGMQRDILKLFPEKQSIKTIGNHFSNQVILGS 282 (294)
T ss_pred HHHHHHHHHHHHhCCcH---HHHHHHHHHHHHHHHHHHHhCcCcccHHHHHHHHHhccHHHH
Confidence 77778888898888877 566788888889999999999887 3555 66666666554
No 11
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=100.00 E-value=7.7e-34 Score=276.37 Aligned_cols=264 Identities=17% Similarity=0.163 Sum_probs=199.0
Q ss_pred HHHHHHHHHHHchhhhHHHHH---HHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCC--
Q 015718 102 LKKFHALYRFMRAYACAGVII---ATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK-- 176 (402)
Q Consensus 102 ~~~l~~~~~l~Rp~~~~~~~l---~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~nk-- 176 (402)
++++++|+|++|+|++.++.+ |.+.|.++|.+..++ +. ..++++++.+++++++|++||++|+|+|++++
T Consensus 2 ~~~~~~y~~L~R~~kp~~~~l~~~p~~~g~~la~~~~~~--~~---~~~l~~~g~~l~~~a~~~~Nd~~D~~iD~~~~Rt 76 (282)
T PRK12848 2 QNRLLAYARLMRLDKPIGTLLLLWPTLWALWLAADGIPD--LW---VLVVFVLGVFLMRAAGCVINDYADRDFDGHVKRT 76 (282)
T ss_pred chhHHHHHHHHCccchHHHHHHHHHHHHHHHHHcCCCCC--HH---HHHHHHHHHHHHHHHHHHHHhhHHhccCCCCCCC
Confidence 357899999999887766654 556677777543333 11 14456678889999999999999999999765
Q ss_pred CCCcccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhhHHh
Q 015718 177 PYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLT 256 (402)
Q Consensus 177 ~~RPlasG~is~~~a~~~~~~~~~~~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g~l~ 256 (402)
|+||+|||++|++++..++.++.++++.+++.+|+..+.+. +.+.++.+.|+. .||++.++++..++..|..+
T Consensus 77 ~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~-~~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~g~~~ 149 (282)
T PRK12848 77 KNRPLASGAVSEKEALALFVVLVLVAFLLVLTLNTLTIWLS-VAALALAWIYPF------MKRYTHLPQVVLGAAFGWGI 149 (282)
T ss_pred CCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHh------HHhcCcccHHHHHHHHHHHH
Confidence 48999999999999999999999999998888887665544 445566789974 68888888887766555443
Q ss_pred HHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHHHHHH
Q 015718 257 QFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYG 336 (402)
Q Consensus 257 ~lg~~~~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~~a~~ 336 (402)
.+++. ++.|. .+...+++.+...+|+...+++++++|+|+|+++|+||+|+++|+|++.+.. .++.+...
T Consensus 150 ~~g~~-----a~~~~----~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~-~~~~~~~~ 219 (282)
T PRK12848 150 PMAFA-----AVQGS----VPLEAWLLFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRYDKLIIG-LLQLATLA 219 (282)
T ss_pred HHHHH-----HHhCC----CcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhccccHHHHH-HHHHHHHH
Confidence 33332 23343 3555667777789999999999999999999999999999999999888775 45555555
Q ss_pred HHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHcCCCChHHH-HHHHHHHHHH
Q 015718 337 AAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASI-LSFYMFIWKL 390 (402)
Q Consensus 337 ~~i~~g~~~~~~~~~~~~~~g~~i~a~~l~~~~~~~d~~~~~~~-~~f~~~iw~l 390 (402)
.....++....++ .|.++..+....+.++++.+|.+|+++| ++|+.+.|.+
T Consensus 220 ~~~~~~~~~~~~~---~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~n~~~g 271 (282)
T PRK12848 220 LLAWAGWLLGLGW---AYYWGLLVAAALFVYQQKLIRDREREACFKAFLNNNWVG 271 (282)
T ss_pred HHHHHHHHhcCcH---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCcHHH
Confidence 5555566555544 4567777888889999999998888766 5555554443
No 12
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=1.5e-33 Score=275.22 Aligned_cols=265 Identities=17% Similarity=0.150 Sum_probs=200.9
Q ss_pred HHHHHHHHHHHchhhhHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCCC--CC
Q 015718 102 LKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKP--YL 179 (402)
Q Consensus 102 ~~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~nk~--~R 179 (402)
-+++++|+|++||++...+..+.+.|.++|..+.++ +. .+++.+++.+++++++|++||++|+|+|++|+| +|
T Consensus 5 ~~~~~~y~~L~r~~~~~~~~~~~~~g~~lA~~~~~~--~~---~l~~~~l~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~R 79 (291)
T PRK12886 5 LTKLKVFLEMIKFSHTLFALPFAGIGAVLAALGLPG--AS---QLDWILMAMVGARTAAMGFNRLIDAEIDARNPRTAGR 79 (291)
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHHhccCCCC--HH---HHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCCCCCC
Confidence 357889999999999988877778888888544333 11 245677888999999999999999999999984 89
Q ss_pred cccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhhHHhHHH
Q 015718 180 PLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFP 259 (402)
Q Consensus 180 PlasG~is~~~a~~~~~~~~~~~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g~l~~lg 259 (402)
|+|+|++|++++..+...+.+.++.+++.+|++++.+.. ...++...|+. +||++.++++..++..+..+..|
T Consensus 80 PL~sG~is~~~A~~~~~~~~~~~~~l~~~~~~~~~~l~~-~~~~~~~~Y~~------~Kr~t~~~~~~~g~~~~~~~l~g 152 (291)
T PRK12886 80 AIPAGLISKGSAILFIVLSSLLMLFAAWFLNPLCLYLSP-PALFFLLLYSY------CKRFTALAHVVLGFCLALAPLGA 152 (291)
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhh------hhccccccHHHHHHHHHHHHHHH
Confidence 999999999999988776666666666778876665543 34555789995 79999999888776544333333
Q ss_pred HHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHHHHHHHHH
Q 015718 260 VYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAV 339 (402)
Q Consensus 260 ~~~~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~~a~~~~i 339 (402)
+ .++.|+ .+...+++.+.+++|+.+++++++++|+|+|+++|+||+|+++|+++++++........+.+.+
T Consensus 153 ~-----~a~~g~----~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~~ 223 (291)
T PRK12886 153 W-----IAIRGT----IELPAILLGLAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIGFLF 223 (291)
T ss_pred H-----HHHcCC----CcHHHHHHHHHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCchhHHHHHHHHHHHHHHHHH
Confidence 2 233454 3555666677788999999999999999999999999999999999999887666666666666
Q ss_pred HHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHcCCCCh-HHHHH-HHHHHHHH
Q 015718 340 VVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDN-ASILS-FYMFIWKL 390 (402)
Q Consensus 340 ~~g~~~~~~~~~~~~~~g~~i~a~~l~~~~~~~d~~~~-~~~~~-f~~~iw~l 390 (402)
..+.....++ .|.++.++....+.++.+..+.+|+ +.|++ |..++|.+
T Consensus 224 ~~~~~~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~F~~~~~~~ 273 (291)
T PRK12886 224 ALGISAGLGP---WFLAGLAVTGILLLYEHWLLRGGDLTRLDAAFFNMNGYIS 273 (291)
T ss_pred HHHHHhcCcH---HHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhHHHH
Confidence 6666655555 4556666666777788888887774 46656 55555554
No 13
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=2.1e-33 Score=273.03 Aligned_cols=277 Identities=13% Similarity=0.175 Sum_probs=202.3
Q ss_pred HHHHHHHHHHch-hhhHHHHHHHHHHHHccc------cc---CCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCcccc
Q 015718 103 KKFHALYRFMRA-YACAGVIIATTSNSLLPV------QT---LADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVD 172 (402)
Q Consensus 103 ~~l~~~~~l~Rp-~~~~~~~l~~l~g~llA~------~~---~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~D 172 (402)
++++.|.|++|. |+.+...+.. .|+++|. ++ .++ +..+++..++++.+++++|++||+.|+|+|
T Consensus 2 ~~~~~~~~~i~~~ht~Falpfa~-~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~~~a~~~~Rsag~~~Nd~~DrdiD 75 (300)
T PRK12876 2 MRIKYFQQLINCKYALFSALFLS-ASTVFALSLPEISFSLFSLGG-----IKTISLGGSAFFCARTVGIIVNQIIDCAID 75 (300)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH-HHHHHHhccccccCCCcCCCC-----HHHHHHHHHHHHHHHHHHHHHHhHHHhccc
Confidence 357899999996 7777655544 3667774 22 222 223567889999999999999999999999
Q ss_pred ccCCC--CCcccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHH
Q 015718 173 KVNKP--YLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVS 250 (402)
Q Consensus 173 r~nk~--~RPlasG~is~~~a~~~~~~~~~~~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~ 250 (402)
++|+| +||+|+|++|+++|+.+..++.++++.++..+|+.++.++. +.+++...||+ +||++.++++..++
T Consensus 76 ~~~~RT~~RPLpsG~is~~~A~~~~~~~~~~~~~l~~~ln~l~~~l~~-~~~~~~~iY~~------~KR~t~~~~~vLGl 148 (300)
T PRK12876 76 KKNPRTSSRVLPAKLLSINFSMLLLTLCSFLFLSLCWLLNPLCFSLAV-LSTLLMIIYPY------TKRVTFLCHWILGL 148 (300)
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHh------HhcCCchhHHHHHH
Confidence 99985 99999999999999999988888888888889987776654 45555689985 89999999987766
Q ss_pred hhhHHhHHHHHHHHHHHHhcCCCccCcH----HHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHH
Q 015718 251 LNGLLTQFPVYVHIQKYVLGRPLEIFTR----PLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRL 326 (402)
Q Consensus 251 ~~g~l~~lg~~~~~~~~v~g~~~~~~~~----~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l 326 (402)
..+..+..++ .++.++. .+. ..+++....++|+.++|++|++||+|+|++.|+||+|+++|++++.++
T Consensus 149 ~~~~~~l~~~-----~Av~~~~---~~~~l~~~~~lw~~~~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~a~~i 220 (300)
T PRK12876 149 VYYLAILMNF-----FAIIETP---LSFSLFCMASLWGISFGMIIAANDIIYAIQDLEFDRKEGLFSIPARFGEKKAIRI 220 (300)
T ss_pred HHHHHHHHHH-----HHHhcCc---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHhhHHHcCCccchHHHCchhHHHH
Confidence 5443332232 2334442 222 223445566778889999999999999999999999999999988777
Q ss_pred HHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH--HHHHHHcCCCChHHHHHHHHH-HH--HHHHHHHhccccC
Q 015718 327 SVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIF--WLRVRAVDLSDNASILSFYMF-IW--KLYYAEYLLIPFV 401 (402)
Q Consensus 327 ~~~l~~~a~~~~i~~g~~~~~~~~~~~~~~g~~i~a~~l--~~~~~~~d~~~~~~~~~f~~~-iw--~l~~~ey~~~~~~ 401 (402)
...++.+...+++..|.....++ .+|..+.++.+..+ .+|.+.+|.++++.|.+||.. .| -++++..+..+..
T Consensus 221 a~~~~~l~~~~l~~~g~~~~l~~--~~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~F~~N~~ig~~~~~~~~~~~~~ 298 (300)
T PRK12876 221 ASANLIASAIAYLLIGYFVSNKK--IFYLCSLVPLTVILKTIKHYSLIDKKKSTLEQKFFLGNIYLALSFFVNMIGLFLL 298 (300)
T ss_pred HHHHHHHHHHHHHHHHHHhhccH--HHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHhcCHHHHHHHHHHHHHHcc
Confidence 76777777777777888877776 34555665444444 455477787888888887764 33 3444555555544
Q ss_pred C
Q 015718 402 R 402 (402)
Q Consensus 402 ~ 402 (402)
|
T Consensus 299 ~ 299 (300)
T PRK12876 299 R 299 (300)
T ss_pred C
Confidence 3
No 14
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=1.3e-33 Score=273.92 Aligned_cols=264 Identities=19% Similarity=0.203 Sum_probs=190.8
Q ss_pred HHHHHHHHHchhhhHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCCCCCcccc
Q 015718 104 KFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLAS 183 (402)
Q Consensus 104 ~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~nk~~RPlas 183 (402)
++|+|+|++||++...+.++.+.|.+++.+..++ .. ..++++++.+++++++|++||++|+|+|++|+|+||+++
T Consensus 3 ~~~~~~~l~Rp~~~~~~~~~~~~g~~~a~~~~~~--~~---~~~l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~~~Rpl~~ 77 (276)
T PRK12882 3 TVRGYLELTRPVNAVVAGVAAFIGAFIAGGILSS--PS---LTGLAFAAVFLATGAGNAINDYFDREIDRINRPDRPIPS 77 (276)
T ss_pred CHHHHHHHHhhhHHHHHHHHHHHHHHHhccccch--HH---HHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCcCC
Confidence 4789999999999999999998898888543221 11 145677888999999999999999999999999999999
Q ss_pred cccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhhHHhHHHHHHH
Q 015718 184 GEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVH 263 (402)
Q Consensus 184 G~is~~~a~~~~~~~~~~~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g~l~~lg~~~~ 263 (402)
|++|+++++.++.++.++++.+++.+|+..+... .++.++.+.||. |+||++.++++.++...|..+.+|..
T Consensus 78 G~is~~~a~~~~~~l~~~g~~~~~~l~~~~~~~~-~~~~~~~~~Yt~-----~lK~~~~~g~~~vg~~~g~~~~~g~~-- 149 (276)
T PRK12882 78 GAVSPRGALAFSILLFAAGVALAFLLPPLCLAIA-LFNSLLLVLYAE-----TLKGTPGLGNASVAYLTGSTFLFGGA-- 149 (276)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH-----HHhcccchhHHHHHHHHHHHHHHHHH--
Confidence 9999999999999999999999998886555443 455566889985 78999988888776554543333321
Q ss_pred HHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 015718 264 IQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGA 343 (402)
Q Consensus 264 ~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~~a~~~~i~~g~ 343 (402)
..+.. .....+.+.+..++|+.+++++||++|+|+|+++|+||+|+++|+|++.++......+... ....++
T Consensus 150 ----~~~~~---~~~~~~~l~~~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~~~t~~~~~~~~~~~~~-~~~~~~ 221 (276)
T PRK12882 150 ----AVGTE---GLLALLVLFALAALATLAREIIKDVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAVA-ASPLPY 221 (276)
T ss_pred ----Hhccc---chHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHcCCccccHHhhHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 22321 1223344455567788899999999999999999999999999999999886554433333 222222
Q ss_pred -hcCcchHHHHHHHHHHHH-HHHHHHHHHHcCCCChHHHHH-HHHHHHHHH
Q 015718 344 -SSPFLANKLITIIGHGIL-ASIFWLRVRAVDLSDNASILS-FYMFIWKLY 391 (402)
Q Consensus 344 -~~~~~~~~~~~~~g~~i~-a~~l~~~~~~~d~~~~~~~~~-f~~~iw~l~ 391 (402)
....++ .|.+...+. ...+....+..|.+|++.+++ |...+|-+.
T Consensus 222 ~~~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~g~ 269 (276)
T PRK12882 222 LLSTFGL---WYLVLVAPADLVMLAAAYRSLKKTDPTASQKLLKYGMFLAL 269 (276)
T ss_pred HHHHhhH---HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 222333 344444443 344445667777778776655 445566554
No 15
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=1.7e-33 Score=273.40 Aligned_cols=263 Identities=19% Similarity=0.261 Sum_probs=197.8
Q ss_pred HHHHHHHHHHchhhhHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCCCCCccc
Q 015718 103 KKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLA 182 (402)
Q Consensus 103 ~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~nk~~RPla 182 (402)
+++++|++++||+++..+.++.+.|.++|....+ +. .+++.+++.+++++++|++||++|+|+|++|+|+||++
T Consensus 2 ~~l~~~~~l~R~~~~~~~~~~~~~g~~la~~~~~---~~---~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~r~~Rpl~ 75 (279)
T PRK12884 2 TKMKAYLELLRPEHGLMAGIAVVLGAIIALGGLP---LD---EALLGFLTAFFASGSANALNDYFDYEVDRINRPDRPIP 75 (279)
T ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCCc---hH---HHHHHHHHHHHHHHHHHHHHhhhhHhhhhccCCCCCCC
Confidence 4788999999999999999998888888854332 11 24566788899999999999999999999999999999
Q ss_pred ccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhhHHhHHHHHH
Q 015718 183 SGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYV 262 (402)
Q Consensus 183 sG~is~~~a~~~~~~~~~~~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g~l~~lg~~~ 262 (402)
+|++|+++++.++.++.++++.++..+|+..+... +++.++++.||. ++||++++++++.+..++..+..++.
T Consensus 76 ~G~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~Ys~-----~lK~~~~~~~~~~~~~~~~~~~~g~~- 148 (279)
T PRK12884 76 SGRISRREALLLAILLFILGLIAAYLISPLAFLVV-ILVSVLGILYNW-----KLKEYGLIGNLYVAFLTGMTFIFGGI- 148 (279)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH-----hhccccchhHHHHHHHHHHHHHHHHH-
Confidence 99999999999999999999999988887555443 456677899996 58999988888877665543333322
Q ss_pred HHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHHHHHHHHHHHH
Q 015718 263 HIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVG 342 (402)
Q Consensus 263 ~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~~a~~~~i~~g 342 (402)
++ +.. +...+++....++|+.++++++|++|+|+|++.|+||+|+++|+|++.++...+....+.+....+
T Consensus 149 ----~~-~~~----~~~~~~l~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~ 219 (279)
T PRK12884 149 ----AV-GEL----NEAVILLAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRIAAALFILAVLLSPLPY 219 (279)
T ss_pred ----Hh-CCC----chHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 321 224455556677888999999999999999999999999999999999987666666665444433
Q ss_pred HhcCcchHHHHHHHHHHHHHHHHHHHH-HHcCCCChHHHHHHHHHHHHH
Q 015718 343 ASSPFLANKLITIIGHGILASIFWLRV-RAVDLSDNASILSFYMFIWKL 390 (402)
Q Consensus 343 ~~~~~~~~~~~~~~g~~i~a~~l~~~~-~~~d~~~~~~~~~f~~~iw~l 390 (402)
.....+| .|.+...+....+.++. +..+.+|++.++.+....+..
T Consensus 220 ~~~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (279)
T PRK12884 220 LFGIFNI---LYLAPVLVADLIFLYSAYSLLRSQDRETIRKVRKITLTA 265 (279)
T ss_pred HHHHhhH---HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 3333334 35555556666666665 556666777776664444333
No 16
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=100.00 E-value=1.7e-33 Score=273.65 Aligned_cols=255 Identities=20% Similarity=0.247 Sum_probs=188.3
Q ss_pred HHHHHHHHHchhhhHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCCCCCcccc
Q 015718 104 KFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLAS 183 (402)
Q Consensus 104 ~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~nk~~RPlas 183 (402)
++++|++++||+++..+.++.+.|.+++.+...+ +. .+++++++.+++++++|++||++|+|+|++|+|+||+|+
T Consensus 2 ~~~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~--~~---~~~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~s 76 (279)
T PRK09573 2 SIKAYFELIRPKNCIGASIGAIIGYLIASNFKID--LK---GIILAALVVFLVCAGGNVINDIYDIEIDKINKPERPIPS 76 (279)
T ss_pred CHHHHHHHHhHhHHHHHHHHHHHHHHHHccCCcc--hH---HHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcCC
Confidence 4688999999999999999998888887542222 21 245677888999999999999999999999999999999
Q ss_pred cccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhhHHhHHHHHHH
Q 015718 184 GEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVH 263 (402)
Q Consensus 184 G~is~~~a~~~~~~~~~~~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g~l~~lg~~~~ 263 (402)
|++|+++++.++.++.++++.+++.+|++.+... +.+.++.++||. ++||++.++++.++...|..+..|+.
T Consensus 77 G~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~-~~~~~~~~~Ys~-----~lKr~~~~~~~~vg~~~G~~~~~g~~-- 148 (279)
T PRK09573 77 GRISLKEAKIFSITLFIVGLILSIFINIYAFLIA-LLNSILLYLYAK-----DLKKTGLIGNLIVAYLTGLSFIFGGL-- 148 (279)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH-----HHhcCCcHHHHHHHHHHHHHHHHHHH--
Confidence 9999999999999999999999988887666544 455566889995 58999999999888766655544432
Q ss_pred HHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 015718 264 IQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGA 343 (402)
Q Consensus 264 ~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~~a~~~~i~~g~ 343 (402)
++.+ ....+++....++|+.+++++||++|+|+|++.|+||+|+++|+|++.++......+..........
T Consensus 149 ---~~~~------~~~~~~l~~~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~ 219 (279)
T PRK09573 149 ---AVFN------VLRIIILFLCAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGIKKSWYIAKILLILAIVLSPLPYF 219 (279)
T ss_pred ---HHcc------chHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHCCCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 1223444556678888999999999999999999999999999999998875444433333322211
Q ss_pred hcCcchHHHHHHHHHHHHHHHHHHHH-HHcCCCChHHHHHH
Q 015718 344 SSPFLANKLITIIGHGILASIFWLRV-RAVDLSDNASILSF 383 (402)
Q Consensus 344 ~~~~~~~~~~~~~g~~i~a~~l~~~~-~~~d~~~~~~~~~f 383 (402)
....+| .|.++..+....+.++. +..+.+|++.++.-
T Consensus 220 ~~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 257 (279)
T PRK09573 220 LGIFGI---YYLIVVIICDILFIIAMLILLKNPSIEGASKA 257 (279)
T ss_pred HHHHHH---HHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHH
Confidence 111233 45555555556666663 44455566655443
No 17
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=100.00 E-value=2.3e-33 Score=273.99 Aligned_cols=266 Identities=23% Similarity=0.322 Sum_probs=207.4
Q ss_pred HhHHHHHHHHHHHchhhhHHHHHHH---HHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCC
Q 015718 100 VFLKKFHALYRFMRAYACAGVIIAT---TSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK 176 (402)
Q Consensus 100 ~~~~~l~~~~~l~Rp~~~~~~~l~~---l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~nk 176 (402)
..+++++.+.+++|++++.++.+.+ ..|..++...+++ +...++++++++++++++|++||+.|+|+||+|+
T Consensus 5 ~~~~~~~~~~~l~r~~r~i~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~ 79 (289)
T COG0382 5 SLPNKLKALLKLLRLDRPIFNLLLLLPALLGLLLAASGLPS-----LKLLLLAFLAFFLARSAGYVINDLADREIDRINP 79 (289)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCch-----HHHHHHHHHHHHHHHHHhHHHHHHhhhhccCCCC
Confidence 4456677777778777777776544 4455555422221 2346678889999999999999999999999999
Q ss_pred C--CCcccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhhH
Q 015718 177 P--YLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGL 254 (402)
Q Consensus 177 ~--~RPlasG~is~~~a~~~~~~~~~~~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g~ 254 (402)
| +||+|||++|+++++.+.++++++++.+++.+|++.+.+ .+++.++.+.|+ ++||.+.+++++++...+.
T Consensus 80 rt~~RPl~sG~vS~~~a~~~~~~~~~~~~~~a~~l~~~~~~l-~~~~~~l~~~Y~------~~Kr~~~~~~~~lg~~~~~ 152 (289)
T COG0382 80 RTKNRPLPSGRVSVKEALLLAILLLLLGLALALLLNPLAFLL-SLAALVLALAYP------FLKRFTFLPQLVLGLAFGL 152 (289)
T ss_pred CccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHH------HhhcCCchHHHHHHHHHHH
Confidence 9 999999999999999999999999999999999876544 467788899995 5899999999998776654
Q ss_pred HhHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHHHH
Q 015718 255 LTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIA 334 (402)
Q Consensus 255 l~~lg~~~~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~~a 334 (402)
.+..|+. ++.|. .....+++.++..+|+++++++||++|+|+|++.|+||+|+.+|++++..++.... ..
T Consensus 153 ~~~~g~~-----a~~~~----~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~G~~~a~~l~~~~~-~~ 222 (289)
T COG0382 153 GALAGAA-----AVGGS----LPLLAWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALLLL-LA 222 (289)
T ss_pred HHHHHHH-----HHhCc----cchHHHHHHHHHHHHHHHHHHHHhccCccchHhcCCcchHHHhCchhHHHHHHHHH-HH
Confidence 4443332 23332 24556778888999999999999999999999999999999999999999875554 55
Q ss_pred HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Q 015718 335 YGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWK 389 (402)
Q Consensus 335 ~~~~i~~g~~~~~~~~~~~~~~g~~i~a~~l~~~~~~~d~~~~~~~~~f~~~iw~ 389 (402)
..++..++....... ..+..+..+.+..+.+|...+|.++++.++.++..-..
T Consensus 223 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (289)
T COG0382 223 SALLVLLGLLAGLLG--LIYLLGLLVAALLLLYQILIVDVRDPPACFALFDVNLL 275 (289)
T ss_pred HHHHHHHHHHHhhch--HHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHhhH
Confidence 555555565554432 35677888888889999999988888888888775333
No 18
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=100.00 E-value=3.7e-33 Score=271.95 Aligned_cols=266 Identities=17% Similarity=0.206 Sum_probs=196.3
Q ss_pred HHHHHHHHHHHchhhhHHH---HHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCC--
Q 015718 102 LKKFHALYRFMRAYACAGV---IIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK-- 176 (402)
Q Consensus 102 ~~~l~~~~~l~Rp~~~~~~---~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~nk-- 176 (402)
.+++++|+|++||+++.+. .+|.+.|.++|.... ..++. ..++++++.+++++++|++||++|+|.|++|+
T Consensus 4 ~~~~~~~~~l~R~~kp~~~~l~~~~~~~g~~la~~~~-~~~~~---~~ll~~l~~~l~~~a~~~~Nd~~D~~iD~~~~Rt 79 (285)
T PRK12847 4 LMKFLAYFKLMRLHKPIGILLVFFPTLFGLLLASHSL-LPDIS---LLVLFIIGSVLMRSAGCIINDIFDRKIDKHVART 79 (285)
T ss_pred HHHHHHHHHHHCcchHHHHHHHHHHHHHHHHHHhCcc-CCcHH---HHHHHHHHHHHHHHHHHHHHhHHHhhhccCCCcc
Confidence 4578999999999988764 467777888875432 12222 25567788899999999999999999999866
Q ss_pred CCCcccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhhHHh
Q 015718 177 PYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLT 256 (402)
Q Consensus 177 ~~RPlasG~is~~~a~~~~~~~~~~~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g~l~ 256 (402)
++||+|+|++|++++..++.++.++++.+++.+|+..+... +++.++.+.||. .||++.++++..++..+..+
T Consensus 80 ~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~-~~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~~ 152 (285)
T PRK12847 80 KNRPLASGALSVKQALILLFILLLIALVILLLLNKTTIYLS-FIAVILIVLYPL------MKRFFYWPQLFLGFTFNMGI 152 (285)
T ss_pred cCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHhccc------cccCCcccHHHHHHHHHHHH
Confidence 48999999999999999999999999998888887665544 455666889985 78988888877765444322
Q ss_pred HHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHHHHHH
Q 015718 257 QFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYG 336 (402)
Q Consensus 257 ~lg~~~~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~~a~~ 336 (402)
..++ .++.|. .+...+++.+..++|+.+++++++++|+|+|+++|+||+|+++|++++.++........+
T Consensus 153 l~~~-----~a~~g~----~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~- 222 (285)
T PRK12847 153 LMAF-----AAVQNQ----LDIEAILLYIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLI- 222 (285)
T ss_pred HHHH-----HHHcCC----CcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhccccHHHHHHHHHHHHH-
Confidence 2222 223343 355566777788999999999999999999999999999999999999888755443333
Q ss_pred HHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHH-HHHHHHHHHH
Q 015718 337 AAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASIL-SFYMFIWKLY 391 (402)
Q Consensus 337 ~~i~~g~~~~~~~~~~~~~~g~~i~a~~l~~~~~~~d~~~~~~~~-~f~~~iw~l~ 391 (402)
.....+......+ .+| ++.++....+.++...+|.+|++.++ .|+.+++.++
T Consensus 223 ~~~~~~~~~~~~~--~~y-~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~ 275 (285)
T PRK12847 223 LWLILGIISSLHN--IFY-LAILAAAGIFYYQYKLLDFDNPANCMYAFKANHYVGL 275 (285)
T ss_pred HHHHHHHHhcCcH--HHH-HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhHHHHH
Confidence 3344454444433 233 35555566788888899988877554 4555565554
No 19
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=100.00 E-value=5.6e-33 Score=273.64 Aligned_cols=270 Identities=15% Similarity=0.085 Sum_probs=201.3
Q ss_pred HHHHhHHHHHHHHHHH---chhhhHHHHHHHHHHHHcccccCC---CCchHHHHHHHHHHHHHHHHHHHHHHhhcccCcc
Q 015718 97 FLNVFLKKFHALYRFM---RAYACAGVIIATTSNSLLPVQTLA---DLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVE 170 (402)
Q Consensus 97 ~~~~~~~~l~~~~~l~---Rp~~~~~~~l~~l~g~llA~~~~~---~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e 170 (402)
+....++++++|+|++ ||+......+|.+.|.++|..... ..++. ..++++++.+++++++|++||++|+|
T Consensus 22 ~~~~~~~~~~~y~~L~R~~kP~~~~l~~~p~~~G~~lA~~~~~~~~~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~Dr~ 98 (314)
T PRK12878 22 VDRRLPPWLRPYAQLARWDRPIGWWLLLWPCWWSAALAAGAAADLGLLLLW---HLFLFFVGAIAMRGAGCTYNDIVDRD 98 (314)
T ss_pred hhhhcchhHHHHHHHHccccchhhHHHHHHHHHHHHHhcccccCCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344668999999999 777888888898899888855311 22221 25567889999999999999999999
Q ss_pred ccccCC--CCCcccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHH
Q 015718 171 VDKVNK--PYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCM 248 (402)
Q Consensus 171 ~Dr~nk--~~RPlasG~is~~~a~~~~~~~~~~~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~ 248 (402)
+|+.++ ++||+++|++|++++..++.++.++++.+.+..|++.+.+. +.++++.+.|+. .||++.+++...
T Consensus 99 iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~~~ 171 (314)
T PRK12878 99 IDAKVARTRSRPLPSGQVSRKQAKVFMVLQALVGLAVLLQFNWFAIALG-IASLAIVAAYPF------MKRITWWPQFFL 171 (314)
T ss_pred cccCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH------HHhcCCcchHHH
Confidence 999866 48999999999999999999999999999888887665544 456666889984 798887777665
Q ss_pred HHhhhHHhHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHH
Q 015718 249 VSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSV 328 (402)
Q Consensus 249 ~~~~g~l~~lg~~~~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~ 328 (402)
++..+..+..|++ +..|+ ++...+++++..++|+..++.+++++|+|+|+++|+||+|+++|+++++++.
T Consensus 172 Gl~~~~~~l~g~~-----a~~g~----~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~- 241 (314)
T PRK12878 172 GLAFSWGALMGWA-----AHFGS----LSLAAVLLYAGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGDHTKTWLV- 241 (314)
T ss_pred HHHHHHHHHHHHH-----HHhCC----CchHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhchhhHHHHH-
Confidence 5443333333332 23454 3555566677788999999999999999999999999999999999998886
Q ss_pred HHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH-HHHH
Q 015718 329 SMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYM-FIWK 389 (402)
Q Consensus 329 ~l~~~a~~~~i~~g~~~~~~~~~~~~~~g~~i~a~~l~~~~~~~d~~~~~~~~~f~~-~iw~ 389 (402)
.+..+......+.+.....+| .|.++.......+.++...+|.+|++.|+++|. +++.
T Consensus 242 ~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~F~~n~~~ 300 (314)
T PRK12878 242 LFYGLAVLLMGLAFWLAGVPL---LALLGLLAAAAHLAWQIARLDIDDPDQCLRLFKSNRDA 300 (314)
T ss_pred HHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHHHHHHHHHcccCChHHHHHHHHHhHHH
Confidence 445454454455555555555 345566666667889999988888877666654 3443
No 20
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=100.00 E-value=3.9e-33 Score=271.27 Aligned_cols=261 Identities=18% Similarity=0.187 Sum_probs=193.5
Q ss_pred HHHHHHHHchhhhHHHHH---HHHHHHHcccc--cCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCC--C
Q 015718 105 FHALYRFMRAYACAGVII---ATTSNSLLPVQ--TLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--P 177 (402)
Q Consensus 105 l~~~~~l~Rp~~~~~~~l---~~l~g~llA~~--~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~nk--~ 177 (402)
+++|.|++|++++.++.+ |.+.|..+|.. ..++ +. ..++.+++..++++++|++||++|+|+|+.|+ |
T Consensus 1 ~~~y~~l~R~~kp~~~~l~~~~~~~g~~la~~~~~~~~--~~---~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~ 75 (281)
T TIGR01474 1 LLPYAKLMRADKPIGTLLLLWPCLWSLLLAAQAGGIPP--LY---LLGLFTVGAILMRGAGCVINDIWDRDFDPQVERTK 75 (281)
T ss_pred ChHHHHHHccccHHHHHHHHHHHHHHHHHHhcccCCCc--HH---HHHHHHHHHHHHHHHHHHHHhHhhhcccccCCccc
Confidence 357899999888766644 55567777743 2222 21 13456678889999999999999999999765 4
Q ss_pred CCcccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhhHHhH
Q 015718 178 YLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQ 257 (402)
Q Consensus 178 ~RPlasG~is~~~a~~~~~~~~~~~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g~l~~ 257 (402)
+||+|+|++|++++..++.++.++++.+++.+|+..+... ++++++.+.||. .||++.++++..++..+..+.
T Consensus 76 ~RPl~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~-~~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~~~ 148 (281)
T TIGR01474 76 SRPLASGAVSVRQAILFLLVQLLVALGVLLQLNPLTILLG-VASLALVATYPF------MKRITYWPQLVLGLAFGWGAL 148 (281)
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHhch------hcccccccHHHHHHHHHHHHH
Confidence 8999999999999999999999999999988887666544 456667899994 799998888877655444333
Q ss_pred HHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHHHHHHH
Q 015718 258 FPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGA 337 (402)
Q Consensus 258 lg~~~~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~~a~~~ 337 (402)
.|++ ++.|. .+...+++.....+|+.+++++++++|+|+|+++|+||+|+++|++++++.. .+..++...
T Consensus 149 ~g~~-----a~~g~----~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~-~~~~~~~~~ 218 (281)
T TIGR01474 149 MGWA-----AVTGD----LSTAAWVLYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNTKPWLG-GLYALMILL 218 (281)
T ss_pred HHHH-----HHcCC----CcHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhhhHHHHH-HHHHHHHHH
Confidence 3432 23454 3445555667788999999999999999999999999999999998876654 445454444
Q ss_pred HHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH-HHHHH
Q 015718 338 AVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYM-FIWKL 390 (402)
Q Consensus 338 ~i~~g~~~~~~~~~~~~~~g~~i~a~~l~~~~~~~d~~~~~~~~~f~~-~iw~l 390 (402)
..+.+.....++ .|.++..+.+..+.+++..+|.+|+++|+++|. +++.+
T Consensus 219 ~~~~~~~~~~~~---~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~ 269 (281)
T TIGR01474 219 LALAGLIAGLGP---VYYLGLAAAALLLIRQIATLDIRDPENCLKLFKANNYVG 269 (281)
T ss_pred HHHHHHHhCCcH---HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhHHH
Confidence 455555555555 455777778888889998888877776655554 44443
No 21
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=100.00 E-value=4.6e-33 Score=275.50 Aligned_cols=255 Identities=19% Similarity=0.304 Sum_probs=182.9
Q ss_pred HHHHHHHHHHHchhhhHHHHHHHHHHHHcccccC-CCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCCCCCc
Q 015718 102 LKKFHALYRFMRAYACAGVIIATTSNSLLPVQTL-ADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLP 180 (402)
Q Consensus 102 ~~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~-~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~nk~~RP 180 (402)
.+++|+|++++||+++. ..+|.+.|.++|.+.. ++... ....+...++...+...++|++||++|+|+|++|||.||
T Consensus 9 ~~~~k~~l~L~kP~t~l-~~~p~~~g~~lA~g~~~~~~~~-~~l~l~~~~~~~~L~~~a~~~iND~~D~~~D~~n~rtRp 86 (331)
T PRK12392 9 VDKIRAHLELLDPVTWI-SVFPCLAGGVMASGAMQPTLHD-YLLLLALFLMYGPLGTGFSQSVNDYFDLELDRVNEPTRP 86 (331)
T ss_pred hHHHHHHHHHHCHHHHH-HHHHHHHHHHHHcCCCCCChhH-HHHHHHHHHHHHHHHHHHHhHHhcceeecccccCCCCCC
Confidence 34688999999999888 6677777777775322 22111 110112223333455677899999999999999999999
Q ss_pred ccccccChHHHHHHHHHHHHHHHHHHHHhch-------HHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhh
Q 015718 181 LASGEISMGTGIAITLASALMSLAYAVMIRS-------PPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNG 253 (402)
Q Consensus 181 lasG~is~~~a~~~~~~~~~~~l~la~~l~~-------~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g 253 (402)
+++|++|+++++.+..++.++++.+++.++. +.+++..+++++++++||. ||+++||+++.+...+++..+
T Consensus 87 l~~G~is~~~al~~~~~l~~la~~lg~~L~~~~~~~~~~~il~~~~~~l~l~~~YS~--~P~~lKr~~~~g~~~vGl~~~ 164 (331)
T PRK12392 87 IPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVIISSILAGLFVAYIYSA--PPLKLKKNILTSAPAVGFSYG 164 (331)
T ss_pred CCcCCcCHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHhhhhcC--CchhhhccchhHHHHHHHHHH
Confidence 9999999999999999999988888766542 2233333456778899995 899999998877776655444
Q ss_pred HHhHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHHH
Q 015718 254 LLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSI 333 (402)
Q Consensus 254 ~l~~lg~~~~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~~ 333 (402)
.....+ ..+..|. .+...+++.+..++|+.+++++||++|+|+|++.|+||+|+++|++++.++......+
T Consensus 165 ~~~~~~-----~~a~~g~----~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~~~a~~i~~~~~~~ 235 (331)
T PRK12392 165 FITFLS-----ANALFSD----IRPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLVSFIIIDL 235 (331)
T ss_pred HHHHHH-----HHHHhcC----CCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcHhhHHHHHHHHHHH
Confidence 332222 1233443 3445556666778899999999999999999999999999999999999987655546
Q ss_pred HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHc
Q 015718 334 AYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAV 372 (402)
Q Consensus 334 a~~~~i~~g~~~~~~~~~~~~~~g~~i~a~~l~~~~~~~ 372 (402)
.....+..++....++ .+....++.+..+.+|.+..
T Consensus 236 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~q~~l~ 271 (331)
T PRK12392 236 VFAVFAWLAWSWGFTV---LMYFILVGLVLNIVIQIQLY 271 (331)
T ss_pred HHHHHHHHHHHhcccH---HHHHHHHHHHHHHHHHHHHH
Confidence 6666666777666665 23345556666677777653
No 22
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=100.00 E-value=5.6e-33 Score=274.05 Aligned_cols=227 Identities=21% Similarity=0.275 Sum_probs=174.5
Q ss_pred HhHHHHHHHHHHHchhhhHHHHHHHHHHHHcccccCCCCchH-HHHHHHHHHHHHHHHHHHHHHhhcccCccccccCCCC
Q 015718 100 VFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPA-YFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPY 178 (402)
Q Consensus 100 ~~~~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~-~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~nk~~ 178 (402)
...+++++|++++||+++.+++++++.|++.+. .. ++... .+..++..+++..++++++|.+||++|+|+|++|||+
T Consensus 22 ~~~~~~~~~~~l~RP~~~~~~~~~~~~g~~~~~-~~-~~~~~~~~~~~l~~~l~~~l~~~~~~~~Nd~~D~~~D~~~~~~ 99 (314)
T PRK07566 22 PTTSIWKARLQLMKPITWFPPMWAFLCGAVSSG-AF-GWTLENVLKLLAGMLLAGPLLCGTSQTLNDYFDREVDAINEPY 99 (314)
T ss_pred ccchHHHHHHHHhCCcchHHHHHHHHHHHHHcC-CC-CcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccCCCC
Confidence 355778999999999999999999887766542 22 22111 1111234557778899999999999999999999999
Q ss_pred CcccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhhHHhHH
Q 015718 179 LPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQF 258 (402)
Q Consensus 179 RPlasG~is~~~a~~~~~~~~~~~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g~l~~l 258 (402)
||+++|++|+++++.++.++.++++.+++.+|++.+.+. +.+++++++||. ||+++||+++++++.+++..|.++.+
T Consensus 100 Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~-l~~~~~~~~Yt~--gP~~lK~~~~~g~i~vg~~~g~~~~~ 176 (314)
T PRK07566 100 RPIPSGAISLRWVLYLIAVLTVLGLAVAYLLGPWVFLAA-LLGLFLAWIYSA--PPLRLKQNGWLGNYAVGLSYEGLPWW 176 (314)
T ss_pred CCCCCceeCHHHHHHHHHHHHHHHHHHHHHHChHHHHHH-HHHHHHHHHhcC--CccccccccchhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999988886555433 456777899995 88999999988888877655433322
Q ss_pred HHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHHHHHHHH
Q 015718 259 PVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAA 338 (402)
Q Consensus 259 g~~~~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~~a~~~~ 338 (402)
+. ..++.+.. .+...++..+..+++..+++++||++|+|+|+++|+||+|+++|++++++++..++.+++.+.
T Consensus 177 ~g----~~~~~~~~---~~~~~~l~~~~~~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a~~l~~~l~~~~~~~~ 249 (314)
T PRK07566 177 AG----AAAFGAGL---PSWPIVILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARIACVVIDLFQLAV 249 (314)
T ss_pred HH----HHHhccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHcCCcccceeEcHHHHHHHHHHHHHHHHHHH
Confidence 21 12222221 344455555667778888999999999999999999999999999999998877777776654
No 23
>PLN00012 chlorophyll synthetase; Provisional
Probab=100.00 E-value=1.8e-32 Score=274.83 Aligned_cols=221 Identities=20% Similarity=0.318 Sum_probs=165.4
Q ss_pred hHHHHHHHHHHHchhhhHHHHHHHHHHHHcccccCCCCchH-HHHHHHHHHHHHHHHHHHHHHhhcccCccccccCCCCC
Q 015718 101 FLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPA-YFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYL 179 (402)
Q Consensus 101 ~~~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~-~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~nk~~R 179 (402)
..+++|.|++++||++|..+.++++.|.... +.+ ++... ....++.++++..++++++|++||++|+|+|++|+|+|
T Consensus 81 ~~~~~k~~l~L~RP~t~~~~~~~v~~G~~~~-g~~-~~~~~~~~~~ll~~ll~~~L~~~~an~iNDy~D~~iD~~~~~~R 158 (375)
T PLN00012 81 ETDIWKIRLQLTKPVTWPPLVWGVLCGAAAS-GNF-HWTLEDVAKSIVCMLMSGPFLTGYTQTINDWYDREIDAINEPYR 158 (375)
T ss_pred chHHHHHHHHHhCHHHHHHHHHHHHHHHHHc-CCC-CchhhhHHHHHHHHHHHHHHHHHHHHHHHCeecHhhhccCCCCC
Confidence 4577899999999999999999988887743 222 11111 11123556777888999999999999999999999999
Q ss_pred cccccccChHHHHHHHHHHHHHHHHHHHHh-------chHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhh
Q 015718 180 PLASGEISMGTGIAITLASALMSLAYAVMI-------RSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLN 252 (402)
Q Consensus 180 PlasG~is~~~a~~~~~~~~~~~l~la~~l-------~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~ 252 (402)
|+++|++|+++++....++.++++.+++.+ +++.+ +..+++++++++||. ||+++||++++|++.++...
T Consensus 159 pi~sG~Is~~~al~~~~~l~~~~l~l~~~L~~~~~~~~~~~~-~l~l~gi~l~~~YS~--pPl~lKr~~~~G~v~lG~~~ 235 (375)
T PLN00012 159 PIPSGAISENEVITQIWVLLLGGLGLAYTLDVWAGHDFPIVF-YLALGGSLLSYIYSA--PPLKLKQNGWIGNYALGASY 235 (375)
T ss_pred CcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH-HHHHHHHHHhhhhcC--CchhhhHhccHhHHHHHHHH
Confidence 999999999999997777777666666544 22222 223456667899995 89999999999988765433
Q ss_pred hHHhHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHH
Q 015718 253 GLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLS 332 (402)
Q Consensus 253 g~l~~lg~~~~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~ 332 (402)
+ .++++. + .++.|. ++...+++.+++++|+.+++++||++|+|+|++.|++|+||++|++++++++..++.
T Consensus 236 ~---~lp~~~-g-~a~~g~----~s~~~illal~~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~~~a~~l~~~~l~ 306 (375)
T PLN00012 236 I---SLPWWA-G-QALFGT----LTPDVVVLTLLYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVETAKWICVGSID 306 (375)
T ss_pred H---HHHHHH-H-HHHcCC----CCHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHcCCcccceeechHHHHHHHHHHHH
Confidence 3 233321 1 234454 355555666677889999999999999999999999999999999999998754444
Q ss_pred HHH
Q 015718 333 IAY 335 (402)
Q Consensus 333 ~a~ 335 (402)
+..
T Consensus 307 l~~ 309 (375)
T PLN00012 307 ITQ 309 (375)
T ss_pred HHH
Confidence 443
No 24
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=100.00 E-value=9.1e-33 Score=268.95 Aligned_cols=222 Identities=20% Similarity=0.222 Sum_probs=172.4
Q ss_pred HHHHHHHchhhhHHHHHHHHHHHHcccccCCC-CchHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCCCCCccccc
Q 015718 106 HALYRFMRAYACAGVIIATTSNSLLPVQTLAD-LTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASG 184 (402)
Q Consensus 106 ~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~-~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~nk~~RPlasG 184 (402)
|+|++++||+++..+..+++.|.+++.....+ +++ ...++.++++..+.+.++|.+||++|+|+|++|+|+||+++|
T Consensus 1 ~~~~~l~rp~t~~~~~~~~~~G~~~a~~~~~~~~~~--~~~ll~~~~~~~l~~~~~n~~Nd~~D~~~D~~~~~~Rpi~~G 78 (283)
T TIGR01476 1 RAHIELMKPVTWIPPIWACFCGALASGYERGFPEHW--WLMLLGMLMAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSG 78 (283)
T ss_pred CceeEecCCceehhHHHHHHHHHHhccCCCCcchhH--HHHHHHHHHHHHHHHHHHHHHHhHhhhCcccCCCCCCCCCCC
Confidence 36889999999999999999998887322122 222 222344667888999999999999999999999999999999
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhhHHhHHHHHHHH
Q 015718 185 EISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHI 264 (402)
Q Consensus 185 ~is~~~a~~~~~~~~~~~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g~l~~lg~~~~~ 264 (402)
++|++++..+..++.++++.+++.++.+......+++.+++++||. ||+++||+++++++..++..+..+..+.+
T Consensus 79 ~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~Ys~--~p~~lk~~~~~g~~~vg~~~~~~~~~~~~--- 153 (283)
T TIGR01476 79 IISLREVRWNWLVLTVAGLLVALVLGNWLIVLFTVVGIVLAVIYSM--PPIKLKRNGWLGPPAVGLSYEGLPWMAGH--- 153 (283)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheecC--chhhhccCCCccHHHHHHHHHHHHHHHHH---
Confidence 9999999999999999999999888766533344566777899995 89999999988888776543322221111
Q ss_pred HHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHHHHHHHHHH
Q 015718 265 QKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVV 340 (402)
Q Consensus 265 ~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~~a~~~~i~ 340 (402)
...+. .+...++.....++++.+++++||++|+|+|+++|+||+|+++|+|++++++..++.+++...+.
T Consensus 154 --~~~~~----~~~~~~~~~~~~~l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~ 223 (283)
T TIGR01476 154 --AIFAP----LTWQSVVVALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVFQAMVIG 223 (283)
T ss_pred --HHhCC----CCHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcCcceEEcHHHHHHHHHHHHHHHHHHHHH
Confidence 12232 34444555566778888899999999999999999999999999999999987777777765544
No 25
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=100.00 E-value=8e-32 Score=263.88 Aligned_cols=268 Identities=14% Similarity=0.085 Sum_probs=189.3
Q ss_pred hHHHHHHHHHHHchhhhHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCC--CC
Q 015718 101 FLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--PY 178 (402)
Q Consensus 101 ~~~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~nk--~~ 178 (402)
.++++++|+|++||+.+..+.++.+.|.++|.+...+ +. .+++++++..++++++|++||++|+|+|++|+ |+
T Consensus 6 ~~~~~~~y~~L~rp~~~~~~~~~~~~G~~la~~~~~~--~~---~~~l~~l~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~ 80 (296)
T PRK04375 6 SRATLKDYLALTKPRVISLNLFTALGGMLLAPPGVPP--LL---LLLLTLLGIALVAGAAGALNNYIDRDIDAKMERTKN 80 (296)
T ss_pred hhhhHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCCC--HH---HHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCccCC
Confidence 3457999999999999999999999998888543222 22 24567788999999999999999999999987 69
Q ss_pred CcccccccChHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhhHH-h
Q 015718 179 LPLASGEISMGTGIAITLASALMSLAYAVM-IRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLL-T 256 (402)
Q Consensus 179 RPlasG~is~~~a~~~~~~~~~~~l~la~~-l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g~l-~ 256 (402)
||+|+|++|++++..++.++.++++.+++. .|+.+..+..+......+.||. ++||++.. +...+...|.. +
T Consensus 81 Rpl~sG~is~~~a~~~~~~l~~~g~~l~~~l~~~~~~~l~~~~~~~~~~~Ys~-----~lKr~~~~-~~~v~~~~g~~~~ 154 (296)
T PRK04375 81 RPLVTGRISPREALIFGLVLGVLGFLLLGLFVNPLAAWLTLAGIFFYVVVYTL-----WLKRRTPQ-NIVIGGAAGAMPP 154 (296)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcc-----chhcCCcc-chHHHHHHHHhHH
Confidence 999999999999999999999999988754 4655554433333334678985 58999964 44443333322 2
Q ss_pred HHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHHHHHH
Q 015718 257 QFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYG 336 (402)
Q Consensus 257 ~lg~~~~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~~a~~ 336 (402)
..|+ .++.|. .+...+++.+..++|+..++..++++|+|||+++|+||+|+++|+++++++... ..+...
T Consensus 155 l~g~-----~a~~g~----~~~~~~~l~~~~~lw~~~~~~~~~~~d~~D~~~~G~~tlpv~~G~~~~~~~~~~-~~~~~~ 224 (296)
T PRK04375 155 LIGW-----AAVTGS----LSWEALILFLIIFLWTPPHFWALAIFRKDDYAAAGIPMLPVVKGIRVTKRQILL-YTVLLV 224 (296)
T ss_pred HHHH-----HHhCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHcCCCccceeeCHHHHHHHHHH-HHHHHH
Confidence 2222 223343 355566677788999999999999999999999999999999999988887643 333333
Q ss_pred HHHHHHHh-cCcchHHHHHHHHHHHHHHHHHHHHHHcCCCChHHH-HHHHHHHHHHH
Q 015718 337 AAVVVGAS-SPFLANKLITIIGHGILASIFWLRVRAVDLSDNASI-LSFYMFIWKLY 391 (402)
Q Consensus 337 ~~i~~g~~-~~~~~~~~~~~~g~~i~a~~l~~~~~~~d~~~~~~~-~~f~~~iw~l~ 391 (402)
....+... ...+| .++..+....+..+.++.+..|.+|++.+ +.|+...|.+.
T Consensus 225 ~~~~~~~~~~~~~~--~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~F~~s~~~~~ 279 (296)
T PRK04375 225 AVSLLPVLLGMAGL--LYLVVALLLGAWFLYYAWRLYRKDDRKWARKLFRYSINYLT 279 (296)
T ss_pred HHHHHHHHHhccCH--HHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHH
Confidence 32222222 22444 22222444455666677777777776654 66666665543
No 26
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=100.00 E-value=1.9e-31 Score=259.22 Aligned_cols=266 Identities=15% Similarity=0.151 Sum_probs=189.3
Q ss_pred HHHHHHHHHchhhhHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCC--CCCcc
Q 015718 104 KFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--PYLPL 181 (402)
Q Consensus 104 ~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~nk--~~RPl 181 (402)
++++|+|++||++.....++.+.|.+++.+...+ +. .+++.+++..++++++|++||++|+|+|++|+ |+||+
T Consensus 1 ~~~~~~~l~rp~~~~~~~~~~~~g~~la~~~~~~--~~---~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl 75 (279)
T PRK12869 1 KIKAYLKLLKPRVIWLLDLAAVAGYFLAAKHGVS--WL---PLIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPT 75 (279)
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCC--HH---HHHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCc
Confidence 3678999999999888889998898888543222 22 24457778889999999999999999999987 69999
Q ss_pred cccccChHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhhHHhHHHH
Q 015718 182 ASGEISMGTGIAITLASALMSLAYAVM-IRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPV 260 (402)
Q Consensus 182 asG~is~~~a~~~~~~~~~~~l~la~~-l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g~l~~lg~ 260 (402)
|+|++|++++..++.++.++++.+++. +|+.+.....+..++..+.||. ++||+++...+..+ ..|..+.++.
T Consensus 76 ~sG~is~~~a~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~Yt~-----~lKr~~~~~~~v~~-~~g~~~~l~g 149 (279)
T PRK12869 76 PVGLVNRKEALAVGSALSALGTALGFLLLGPLTALFIALGWFFYAVVYTI-----WLKPRTWLNIVIGG-FAGNAAALAG 149 (279)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-----ccccCChHHHHHHH-HHHHHHHHHH
Confidence 999999999999999999999998877 7765433333445566788995 58999986554443 3343443333
Q ss_pred HHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHHHHHHHHHH
Q 015718 261 YVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVV 340 (402)
Q Consensus 261 ~~~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~~a~~~~i~ 340 (402)
+. +..|. .+...+++.+.+++|+.++....+++|+|+|+++|+||+|+++|+|++.+....+..+.......
T Consensus 150 ~~----a~~g~----~~~~~~ll~~~~~~w~~~~~~~l~~~d~edd~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~ 221 (279)
T PRK12869 150 YA----SGTGS----LDLEAVLLSFLIYLWTPGHIWSLALKYREDYRRAGVPMLPAVVGEKTSVRAISISNALMIPYILL 221 (279)
T ss_pred HH----HHhCC----CCHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHcCCeecceeecHHHHHHHHHHHHHHHHHHHHH
Confidence 32 23343 35555666677888998887778899999999999999999999999988765554443333333
Q ss_pred HHHhcCcchHHHHHHHHHHHH-HHHHHHHHHHcCCCChH-HHHHHHHHHHHHHH
Q 015718 341 VGASSPFLANKLITIIGHGIL-ASIFWLRVRAVDLSDNA-SILSFYMFIWKLYY 392 (402)
Q Consensus 341 ~g~~~~~~~~~~~~~~g~~i~-a~~l~~~~~~~d~~~~~-~~~~f~~~iw~l~~ 392 (402)
.+. ...++ .|.++..+. +..+.++.+..+.+|++ +.+.|..++|.+..
T Consensus 222 ~~~-~~~g~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~s~~~l~~ 271 (279)
T PRK12869 222 LYL-YYIGL---IGLILVAILSAALMATSIRALLNPTKEEAWKMFKASSPYLAL 271 (279)
T ss_pred HHH-hhccH---HHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHH
Confidence 333 33444 444444433 33444555666555555 45667778887654
No 27
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=100.00 E-value=6.3e-31 Score=258.57 Aligned_cols=228 Identities=21% Similarity=0.309 Sum_probs=171.0
Q ss_pred HhHHHHHHHHHHHchhhhHHHHHHHHHHHHcccccCCCCchH-HHHHHHHHHHHHHHHHHHHHHhhcccCccccccCCCC
Q 015718 100 VFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPA-YFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPY 178 (402)
Q Consensus 100 ~~~~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~-~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~nk~~ 178 (402)
...++++.|++++||+++..++++++.|...+ +.+ ++... ....++.++++..++++++|.+||++|+|.|+.|+|+
T Consensus 11 ~~~~~~~~~~~l~RP~~~~~~~~~~~~G~~~~-~~~-~~~~~~~~~~ll~~ll~~~l~~~~~n~~NDy~D~d~D~~~~~~ 88 (306)
T TIGR02056 11 GETNIWKIRLQLMKPITWIPLIWGVVCGAAAS-GNF-HWSLEDVAKAALCMLLSGPCLTGYTQTINDFYDRDIDAINEPY 88 (306)
T ss_pred cchhHHHHHHHHcChHhhHHHHHHHHHHHHHc-CCC-CcchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccCCCC
Confidence 34566889999999999999999998887754 222 11111 1111334456778999999999999999999999999
Q ss_pred CcccccccChHHHHHHHHHHHHHHHHHHHHhch------HHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhh
Q 015718 179 LPLASGEISMGTGIAITLASALMSLAYAVMIRS------PPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLN 252 (402)
Q Consensus 179 RPlasG~is~~~a~~~~~~~~~~~l~la~~l~~------~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~ 252 (402)
||+++|++|+++++.++.++.++++.+++.+.. +..++..+++++++++||. ||+++||+++++++.++...
T Consensus 89 Rpi~~G~is~~~a~~~~~~l~~~~~~lg~~l~~~~~~~~~~~~~l~~~~~~~~~~Yt~--gP~~lk~~g~~G~i~vg~~~ 166 (306)
T TIGR02056 89 RPIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLALFGSFIAFIYSA--PPLKLKQNGWLGNFALGASY 166 (306)
T ss_pred CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHcC--ChhhhhhcccHHHHHHHHHH
Confidence 999999999999999998888888887765431 2223333566777999995 89999999988887765443
Q ss_pred hHHhHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHH
Q 015718 253 GLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLS 332 (402)
Q Consensus 253 g~l~~lg~~~~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~ 332 (402)
+..+..+. ..++|. ++...++..+..++|+.+++++||++|+|+|++.|+||+|+++|+|++++++..+..
T Consensus 167 ~~~~~~~~-----~a~~g~----~~~~~~l~~~~~~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a~~~~~~l~~ 237 (306)
T TIGR02056 167 IALPWWAG-----HALFGE----LNPDIAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICVGAID 237 (306)
T ss_pred HHHHHHHH-----HHHhCC----CcHHHHHHHHHHHHHHHHHHHHHHccChHHHHHcCCcCcchhcChHHHHHHHHHHHH
Confidence 32222211 123443 355555666677789999999999999999999999999999999999999877766
Q ss_pred HHHHHHHH
Q 015718 333 IAYGAAVV 340 (402)
Q Consensus 333 ~a~~~~i~ 340 (402)
.++.+.+.
T Consensus 238 ~~~~~~~~ 245 (306)
T TIGR02056 238 IFQGLIAA 245 (306)
T ss_pred HHHHHHHH
Confidence 66654433
No 28
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=100.00 E-value=9.3e-31 Score=254.49 Aligned_cols=268 Identities=16% Similarity=0.129 Sum_probs=190.9
Q ss_pred HHHHHHHchhhhHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCC--CCCcccc
Q 015718 106 HALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--PYLPLAS 183 (402)
Q Consensus 106 ~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~nk--~~RPlas 183 (402)
|+|+|++||+++..+.++++.|.++|.... +.++. .+++++++.+++++++|++||++|+|+|++|+ |+||+++
T Consensus 1 ~~~~~l~rp~~~~~~~~~~~~g~~la~~~~-~~~~~---~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~s 76 (280)
T TIGR01473 1 KDYLQLTKPRIISLLLITAFAGMWLAPGGA-LVNPP---LLLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVT 76 (280)
T ss_pred CchHHHccHHHHHHHHHHHHHHHHHhCCCC-CCCHH---HHHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCC
Confidence 468999999999999999999988885432 12222 24567788999999999999999999999976 6999999
Q ss_pred cccChHHHHHHHHHHHHHHHHH-HHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhhHHhHHHHHH
Q 015718 184 GEISMGTGIAITLASALMSLAY-AVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYV 262 (402)
Q Consensus 184 G~is~~~a~~~~~~~~~~~l~l-a~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g~l~~lg~~~ 262 (402)
|++|++++..++.++.++|+.+ ...+|+....+..+..++..++||. .+||++..+.+..++ .|..++++.|.
T Consensus 77 G~is~~~a~~~~~~~~~~g~~il~~~~~~~~~~l~~~~~~~~~~~Yt~-----~lKr~~~~~~~v~~~-~g~~~~l~g~~ 150 (280)
T TIGR01473 77 GRISPREALAFGLLLGVLGVAILAAFVNPLAALLGLFGIFFYVIVYTI-----WLKRRTPQNTVIGGF-AGAVPPLIGWA 150 (280)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCh-----hhccCCchhHHHHHH-HHHHHHHHHHH
Confidence 9999999999999999998884 4457765554433222234788994 379998876655543 34333333332
Q ss_pred HHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHHHHHHHHHHHH
Q 015718 263 HIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVG 342 (402)
Q Consensus 263 ~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~~a~~~~i~~g 342 (402)
+..|. .+...+++...+.+|+..++...+++|+|+|+++|+||+|+++|+|++.+..............+.+
T Consensus 151 ----a~~g~----~~~~~~~l~~~~~~w~~~~~~~~a~~~~~dd~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~ 222 (280)
T TIGR01473 151 ----AVTGS----ISLGAWLLFAIIFLWQPPHFWALALKYKDDYRAAGIPMLPVVKGERITKRQIALYTAALLPVSLLLA 222 (280)
T ss_pred ----HhcCC----CCHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHCCCccCCcccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22343 3555566667788899888888889999999999999999999999888775444333333333334
Q ss_pred HhcCcchHHHHHHHHHHHHHHHHHHHHHHcCCC-ChH-HHHHHHHHHHHHHHH
Q 015718 343 ASSPFLANKLITIIGHGILASIFWLRVRAVDLS-DNA-SILSFYMFIWKLYYA 393 (402)
Q Consensus 343 ~~~~~~~~~~~~~~g~~i~a~~l~~~~~~~d~~-~~~-~~~~f~~~iw~l~~~ 393 (402)
.....++ .++.++..+.+..+.++.+..|.+ |++ +.+.|+...+.+...
T Consensus 223 ~~~~~~~--~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~f~~s~~~~~~~ 273 (280)
T TIGR01473 223 FLGGTGW--LYLIVATLLGALFLYLAFKFYRDPTDRKKARKLFKFSLIYLALL 273 (280)
T ss_pred HHhcccH--HHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 4444555 333356666677777888777766 554 556777777766543
No 29
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=100.00 E-value=1e-30 Score=253.78 Aligned_cols=204 Identities=24% Similarity=0.330 Sum_probs=159.3
Q ss_pred HHHHHHHHHchhhhHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCCCCCcccc
Q 015718 104 KFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLAS 183 (402)
Q Consensus 104 ~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~nk~~RPlas 183 (402)
++|+|++++||+++..+.++.+.|.+++.+..++. . ..++.+++.++.++++|++||++|+|+|+.|||+||+++
T Consensus 2 ~l~~~~~l~Rp~~~~~~~~~~~~G~~la~~~~~~~--~---~~~l~~~~~~~~~~a~~~~Nd~~D~~~D~~n~~~Rpl~s 76 (277)
T PRK12883 2 ELKAFIEITRPHNCILAGIVGILGSLVALGGIPPI--K---TLILIFLVVYLGCSGGNTINDYFDYEIDKINRPNRPLPR 76 (277)
T ss_pred CHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCcH--H---HHHHHHHHHHHHHHHHhHHHhhhhHhccccCCCCCCCCC
Confidence 46789999999999999998888888875433321 1 134566778888999999999999999999999999999
Q ss_pred cccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhhHHhHHHHHHH
Q 015718 184 GEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVH 263 (402)
Q Consensus 184 G~is~~~a~~~~~~~~~~~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g~l~~lg~~~~ 263 (402)
|++|++++..++.++.++|+.+++.+|++.+.+. +.+.++++.|+. ++||.+.++++.++...|..+..|+.
T Consensus 77 G~is~~~a~~~~~~l~~~g~~l~~~~~~~~~~~~-~~~~~~~~~Y~~-----~~k~~~~lg~~~vg~~~g~~~~~g~~-- 148 (277)
T PRK12883 77 GAMSRKAALYYSLLLFAVGLALAYLINIEAFLFA-LGAYVLMFLYAW-----KLKPLPFIGNVVVALLTGATPIYGAI-- 148 (277)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhh-----cccCCcchhhHHHHHHHHHHHHHHHH--
Confidence 9999999999999999999999988887666544 455667899996 68998888888887666654433332
Q ss_pred HHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHH
Q 015718 264 IQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVS 329 (402)
Q Consensus 264 ~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~ 329 (402)
++ +. .+...++ ....++++..+++.||++|+|+|+++|+||+|+++|+|+++++...
T Consensus 149 ---a~-~~----~~~~~~~-~~~~fl~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~ 205 (277)
T PRK12883 149 ---AV-GR----IGLAGYL-AICAFLVNVAREIMKDIEDIEGDKAKGAKTLPIIIGKKRAAYIGAI 205 (277)
T ss_pred ---Hh-cc----ccHHHHH-HHHHHHHHHHHHHHhhhhhhccHHHcCCcCcChHhcHHHHHHHHHH
Confidence 12 32 2332222 2334556678889999999999999999999999999999887643
No 30
>PRK13595 ubiA prenyltransferase; Provisional
Probab=99.98 E-value=5.2e-30 Score=247.73 Aligned_cols=264 Identities=17% Similarity=0.190 Sum_probs=183.0
Q ss_pred HHHHHHHHHHHchhhhHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCCCCCcc
Q 015718 102 LKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPL 181 (402)
Q Consensus 102 ~~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~nk~~RPl 181 (402)
...++.+++++||..|+....++..|...+.+. .|..+.. +++.+......+.+.|.+||++|+|+|++|+|+||+
T Consensus 9 ~~~l~~ll~~sRP~~wi~t~~~~~~G~~~~g~~-~~~~~~~---~~l~~~~~~p~n~~~~giND~fD~eiDa~Npr~~~i 84 (292)
T PRK13595 9 LLPLRRLLLISRPALWVNTVGTLVTGVWLTGHL-YTLDPGV---LPLLLYLTLPFNLLIYGLNDLADRETDAASPRKGGW 84 (292)
T ss_pred hhHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCc-ccchhHH---HHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCCCC
Confidence 456777999999999999999999998776432 2321122 334455566778899999999999999999999999
Q ss_pred cccccChHHHHHHHHHHHHH----HHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhhHHhH
Q 015718 182 ASGEISMGTGIAITLASALM----SLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQ 257 (402)
Q Consensus 182 asG~is~~~a~~~~~~~~~~----~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g~l~~ 257 (402)
++|++|++++..+..++.+. ++.+++..|++.+.+ .+++.++.++||. ||+|+|++++++++++.. .|.
T Consensus 85 ~~G~is~~~~~~~~~~~~~~~~~~~l~la~~l~~~~~~l-~~v~~~l~~~YS~--pPlRlK~rp~l~~l~~~~-~g~--- 157 (292)
T PRK13595 85 QGARLSPGEVRPLLRAVLLLNAPFLLYLALLLPPAATLL-LLLYAALFVGYSL--PPLRFKARPFLDGLSNAA-YAL--- 157 (292)
T ss_pred CcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHcc--CccchhcCcchhHHHHHH-HHH---
Confidence 99999999998865544443 456667777655544 3566788999995 999999999999888632 232
Q ss_pred HHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHHHHHHH
Q 015718 258 FPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGA 337 (402)
Q Consensus 258 lg~~~~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~~a~~~ 337 (402)
++. .+..+.|.. ... .......+|.+++++++|++|+||||+.|+||+|+++|+|++.+++..+..++-.+
T Consensus 158 -p~~--~~~~~~g~~----~~~--~~l~a~~~w~~g~dii~ai~DiegDr~~Gi~Slpv~lG~r~a~~~a~~~~~~a~~~ 228 (292)
T PRK13595 158 -PLA--LPALALGAP----VPW--PPLLALMAWSVGKHAFDAAQDIPADRAAGTRTVATTLGVRGTALYALAWFLLAGAL 228 (292)
T ss_pred -HHH--HHHHHcCCc----chH--HHHHHHHHHHHHHHHHHhccChHhHHHcCCeechHHhCcHhHHHHHHHHHHHHHHH
Confidence 211 122334432 222 22245678889999999999999999999999999999999999987666554444
Q ss_pred HHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHH
Q 015718 338 AVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKLYYAEY 395 (402)
Q Consensus 338 ~i~~g~~~~~~~~~~~~~~g~~i~a~~l~~~~~~~d~~~~~~~~~f~~~iw~l~~~ey 395 (402)
+.... ...+ +...+..++.+. +-. .|.+.++.-+.|..|||..+.+..
T Consensus 229 ~~~~~---~~~~--~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~g~ 276 (292)
T PRK13595 229 LWPVS---RLTA--LALWLICGGMAL----ALW-RRPTPETAHRLYPLSIVTPWIVGT 276 (292)
T ss_pred HHHhc---chHH--HHHHHHHHHHHH----HHh-cCCCHHHHhccchHHHHHhHHHHH
Confidence 33322 2222 111122222222 212 566666677888888887655443
No 31
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=99.97 E-value=1.1e-29 Score=248.77 Aligned_cols=267 Identities=14% Similarity=0.163 Sum_probs=190.4
Q ss_pred HHHHHHHHHchhhhHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCC-----CC
Q 015718 104 KFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK-----PY 178 (402)
Q Consensus 104 ~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~nk-----~~ 178 (402)
++|.|++.+||+++.....|.+.|.++|.....++++. ..++++++..++++++|.+||++|.+.|..|+ |+
T Consensus 3 ~~~~~~~~~Rp~tl~~s~~~v~lG~a~a~~~~~~f~~~---~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~rt~~~~ 79 (296)
T PRK05951 3 NAKLFFIFTRPWSFVMTAIVAFFSIAYGYYLFRSFDPL---LGALMLLGYFLLHASLNVFNDYKDYVLDCDHHETTGYRQ 79 (296)
T ss_pred cHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCcCHH---HHHHHHHHHHHHHHHHHHHHhHHHHhcCCccccccCCCC
Confidence 57899999999999999999999988886433345443 25567889999999999999999954444433 78
Q ss_pred CcccccccChHHHHHHHHHHHHHHHHHHHH----hchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhhH
Q 015718 179 LPLASGEISMGTGIAITLASALMSLAYAVM----IRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGL 254 (402)
Q Consensus 179 RPlasG~is~~~a~~~~~~~~~~~l~la~~----l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g~ 254 (402)
||+++|++|++++...+.++..+++.++.. .+. ..++..+++.++++.||. ||+++|++++ |++..++..|.
T Consensus 80 r~l~~G~is~~~~~~~~~~~~~ia~~~g~~l~~~~~~-~~l~l~~~~~~~~~~Yt~--~P~~lky~gl-Ge~~v~~~~g~ 155 (296)
T PRK05951 80 HPIQAGIMTLGHLRVLGIALGAIALQLGWSLVLDRGI-GAVTLALLGVFLWTCYMG--PPFFLKYRWL-GEHLVFYAWSH 155 (296)
T ss_pred CccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHcC--CCcccCCCCc-hHHHHHHHHHH
Confidence 999999999999999888877766555432 343 333344567788999994 8989998765 67666666676
Q ss_pred HhHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHHHH
Q 015718 255 LTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIA 334 (402)
Q Consensus 255 l~~lg~~~~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~~a 334 (402)
...+|.+.. .... ++...+.......+++.....+|++||+|+|++.|+||+|+++|+|++ +....+...+
T Consensus 156 ~~vlg~~~~-----~~~~---~~~~~~~~sl~~~l~~~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a-~~~~~~~~~~ 226 (296)
T PRK05951 156 MLVMGLIYV-----WLGN---LSSPNLLAGVPLGLLMALVLLSNNLRDIEDDERKGIPTLAVIFGRRGA-ALYIFALLSP 226 (296)
T ss_pred HHHHHHHHH-----HhCc---ccHHHHHHHHHHHHHHHHHHHHCCCccchhHHHCCCeeeeeeEcHhhH-HHHHHHHHHH
Confidence 665655432 2221 344445555667777888899999999999999999999999999999 5555667777
Q ss_pred HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Q 015718 335 YGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMF 386 (402)
Q Consensus 335 ~~~~i~~g~~~~~~~~~~~~~~g~~i~a~~l~~~~~~~d~~~~~~~~~f~~~ 386 (402)
|...+........++....+.+++......+.++.+..|.++.+.+-+.+..
T Consensus 227 ~~~~~~~~~~g~~~~~~l~~ll~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (296)
T PRK05951 227 YVILQILLIAILTPLISLWALLSLLVAYALCLWQLRKFPPDPDEATVQLFML 278 (296)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhCcccccHHHHHHHHH
Confidence 7755555444333332334555555555555666666666555555555544
No 32
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=99.97 E-value=2.6e-29 Score=246.76 Aligned_cols=268 Identities=13% Similarity=0.122 Sum_probs=186.2
Q ss_pred HHHHHHHHHHHchhhhHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCC--CCC
Q 015718 102 LKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--PYL 179 (402)
Q Consensus 102 ~~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~nk--~~R 179 (402)
++++++|++++||+++..+.++.+.|.+++.... .++. ..++++++..++++++|++||++|+|+|+.++ ++|
T Consensus 10 ~~~l~~~~~L~RP~~~~~~~~~~~~G~~la~~~~--~~~~---~~~~~~lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~R 84 (306)
T PRK13362 10 EASLKDYIQVTKPGIIFGNVISVAGGFFLASKGH--VDPV---LMLAAVIGLSLVVASGCALNNCIDRDIDAKMQRTRNR 84 (306)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCC--CCHH---HHHHHHHHHHHHHHHHHHHhChHHhCcCCCCCCCCCC
Confidence 4467899999999999999999999988884332 2222 14456678889999999999999999999754 589
Q ss_pred cccccccChHHHHHHHHHHHHHHHHHHH-HhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhhHHhHH
Q 015718 180 PLASGEISMGTGIAITLASALMSLAYAV-MIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQF 258 (402)
Q Consensus 180 PlasG~is~~~a~~~~~~~~~~~l~la~-~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g~l~~l 258 (402)
|+|||++|+++++.++.++.++|+.++. ..|+.......+..+...++||. ++||++..+++..++..+..+..
T Consensus 85 PlpsG~is~~~A~~~~~~l~~~g~~ll~~~~n~~~~~l~~~~~~~~~~~Yt~-----~lKr~t~~~~~vgg~~ga~p~l~ 159 (306)
T PRK13362 85 VTVTGEISLGEALGFGLALGVAGFGLLAAFTNPLAALFAAFGYVVYVGVYSL-----YLKRNSVYGTLVGSLSGAMPPVV 159 (306)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH-----HHhccCcHhHHHHHHHHHHHHHH
Confidence 9999999999999999999999988654 45755443333334445678994 58999998888776554433333
Q ss_pred HHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHHHHHHHH
Q 015718 259 PVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAA 338 (402)
Q Consensus 259 g~~~~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~~a~~~~ 338 (402)
|+. ++.|. .+...+++.+.+++|+..++...+++|.|||+++|+||+|+++|++++.+.. .+..+.....
T Consensus 160 G~~-----a~~g~----~~~~~~~l~~~~~~W~~~h~~~~ai~~~~Dy~~aG~~~lpv~~G~~~t~~~~-~~~~~~~~~~ 229 (306)
T PRK13362 160 GYC-----AVTGQ----FDAGALILLLMFSLWQMPHSYAIAIFRFNDYAAAGIPVLPVARGIAKTKLHI-VLYILVFALV 229 (306)
T ss_pred HHH-----HHcCC----CcHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHCCCeeeceecChHHHHHHH-HHHHHHHHHH
Confidence 332 33444 3555667778899999999999999999999999999999999999888754 3333333332
Q ss_pred HHHHHhcC-cchHHHHHHHHHHHHHHHHHHHHH---HcCCCCh-HHHHHHHHHHHHHHH
Q 015718 339 VVVGASSP-FLANKLITIIGHGILASIFWLRVR---AVDLSDN-ASILSFYMFIWKLYY 392 (402)
Q Consensus 339 i~~g~~~~-~~~~~~~~~~g~~i~a~~l~~~~~---~~d~~~~-~~~~~f~~~iw~l~~ 392 (402)
.......+ .++ .|.+...+....+++... +-+.+|+ .+.+.|+.++|++..
T Consensus 230 s~l~~~~g~~g~---~y~~~~~~~~~~~l~~a~~~~~~~~~~~~~a~~~f~~S~~yl~~ 285 (306)
T PRK13362 230 TALLPLAGYTGI---GYLAVAAATSLWWLAMALKGYRHAVDDTVWARQLFGFSILTITA 285 (306)
T ss_pred HHHHHHHccccH---HHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHH
Confidence 22222222 233 343333333333333332 2121333 356677777777654
No 33
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=99.97 E-value=5.8e-29 Score=243.30 Aligned_cols=230 Identities=16% Similarity=0.185 Sum_probs=175.6
Q ss_pred HHHHHHHHHchhhhHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCc--cccc--cCCCCC
Q 015718 104 KFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDV--EVDK--VNKPYL 179 (402)
Q Consensus 104 ~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~--e~Dr--~nk~~R 179 (402)
.+++|++++||+++..+.+|++.|.++|... .++++. ..++.+++.++++.++|.+|||+|+ +.|+ .++|+|
T Consensus 2 ~~~~~~~~~Rp~~~~~~~~p~l~G~~~a~~~-~~~~~~---~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~r 77 (293)
T PRK06080 2 TFKAWLELARPKTLPAAFAPVLVGTALAYWL-GSFHPL---LALLALLAALLLQIATNLANDYGDYVKGTDTEDRVGPLR 77 (293)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHHHHc-CCccHH---HHHHHHHHHHHHHHHHHHHHhHHHhccCCCcccccCCcc
Confidence 3678999999999999999999998887432 233332 2556778889999999999999998 5675 467899
Q ss_pred cccccccChHHHHHHHHHHHHHHHHHHHH----hchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhhHH
Q 015718 180 PLASGEISMGTGIAITLASALMSLAYAVM----IRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLL 255 (402)
Q Consensus 180 PlasG~is~~~a~~~~~~~~~~~l~la~~----l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g~l 255 (402)
|+++|++|++++...+.++.++++.++.. .++ ...+..+++++++++||. ||.++|++++ +++..++..|..
T Consensus 78 ~l~~G~is~~~~~~~~~~~~~~~~~~g~~l~~~~~~-~~~~~~~~~~~~~~~Ys~--~p~~~~~~gl-ge~~~~~~~G~~ 153 (293)
T PRK06080 78 AIGRGGISPKQVKRAAIAFFGLAALLGLYLVAVSGW-WLLLLGLLCIAAAILYTG--GPKPYGYTGL-GELFVGVFFGLV 153 (293)
T ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHhhhhcC--CCCccCCCCc-HHHHHHHHHHHH
Confidence 99999999999998887777766665543 343 333334556777899995 8888888775 777776666655
Q ss_pred hHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHHHHH
Q 015718 256 TQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAY 335 (402)
Q Consensus 256 ~~lg~~~~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~~a~ 335 (402)
...+.+. +... ..+...++..++.++|+...+++||++|+|+|++.|+||+|+++|+|++++++..+..++|
T Consensus 154 ~~~~~~~-----~~~~---~~~~~~~~~~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~ 225 (293)
T PRK06080 154 IVLGTYY-----LQAG---TVDSAVFLPALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAY 225 (293)
T ss_pred HHHHHHH-----HhcC---CCCHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHH
Confidence 4443322 1112 1355566677778889999999999999999999999999999999999999999998998
Q ss_pred HHHHHHHHhcCcch
Q 015718 336 GAAVVVGASSPFLA 349 (402)
Q Consensus 336 ~~~i~~g~~~~~~~ 349 (402)
+..+........++
T Consensus 226 ~~~~~~~~~~~~~~ 239 (293)
T PRK06080 226 LCIVLLALLGLASP 239 (293)
T ss_pred HHHHHHHHHhhhhH
Confidence 87776665544444
No 34
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=99.97 E-value=7.6e-28 Score=235.44 Aligned_cols=269 Identities=13% Similarity=0.109 Sum_probs=174.1
Q ss_pred HHHHHHHHHHchhhhHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccC-------
Q 015718 103 KKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVN------- 175 (402)
Q Consensus 103 ~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~n------- 175 (402)
.++++|++++||++......+++.|.++|......+++.. .++.+++..++..++|++||+.|+|.|+.|
T Consensus 3 ~~~~~~~~l~Rp~~l~~~~~~~~~g~~lA~~~~g~~~~~~---~~l~~l~~~l~~~ag~~iND~~D~~~D~~~v~rtm~r 79 (297)
T PRK12871 3 ETLKAYIDLTRAHFLPAWPLLFCSGLVLAFANYGGFSWEL---TIKAALIGLFGFEAGFVLNDYVDRKRDRLDVENTLTR 79 (297)
T ss_pred chHHHHHHHHhHHHHHHHHHHHHHHHHHHHHccCCCCHHH---HHHHHHHHHHHHHHHHHHhhHHHHhcCcchHhhhhhc
Confidence 4688999999999888877777778777631111222321 222334444455778999999999999865
Q ss_pred --C--CCCcccccccChHHHHHHHHHHHHHHHHHHHHhchH---HHHHHHHHHHHHHhhccCCccccccccc---cchhH
Q 015718 176 --K--PYLPLASGEISMGTGIAITLASALMSLAYAVMIRSP---PFIWAVIAWIFVGTAYSVQLPLLRWKGN---SFLAA 245 (402)
Q Consensus 176 --k--~~RPlasG~is~~~a~~~~~~~~~~~l~la~~l~~~---~~~~~l~~~~~l~~~Ys~~lpp~rlKr~---~~l~~ 245 (402)
| ++||+++|++|++++..+..++.++++.++..++.. ......+.+.++++.|+. .||. |. +.
T Consensus 80 ~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l~~~l~~~~~~~~~~l~~~~~~~~~~Y~~------~kr~~~~p~-~~ 152 (297)
T PRK12871 80 YWRPFKERPIPSGKLSSKNAFALFILLAAVTSALILTLPYPNSLYVFVIMLYSYGIEAFYQV------KKRNQKYPV-AQ 152 (297)
T ss_pred cccCCCCCccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------ccccccccH-HH
Confidence 3 489999999999999999999999888887665432 121222344566778884 2332 31 12
Q ss_pred HHHHHhhhHHhHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHH
Q 015718 246 FCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFR 325 (402)
Q Consensus 246 l~~~~~~g~l~~lg~~~~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~ 325 (402)
+..++..+.+ ++..+ ...|. .+...++...+.++|+.+++++||++|+|||++.|+||+|+++|++++++
T Consensus 153 l~G~~~~~~~-~~~g~-----~~~g~----~~~~~~ll~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~ 222 (297)
T PRK12871 153 LLGRTDFTLF-PAAGY-----LCYGQ----PDMTALLYMVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGTMY 222 (297)
T ss_pred HHHHHHHHHH-HHHHH-----HHhCC----CcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechHHHHH
Confidence 1121111221 22112 23443 34455666677889999999999999999999999999999999998887
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH--HHHHHHHHHH
Q 015718 326 LSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYM--FIWKLYYAEY 395 (402)
Q Consensus 326 l~~~l~~~a~~~~i~~g~~~~~~~~~~~~~~g~~i~a~~l~~~~~~~d~~~~~~~~~f~~--~iw~l~~~ey 395 (402)
....+..+.... ..+.....++ ..+....++.+..+.+|.+..+.+|++.|-+-|. .....+|..-
T Consensus 223 ~i~~~~~l~~l~--~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 290 (297)
T PRK12871 223 WVTGFTALHFLA--AIFFLRELGP--IALYGFLAGFVLLAGANLYLWKEKSQDAGMKILPLYHASLVIYAVS 290 (297)
T ss_pred HHHHHHHHHHHH--HHHHHHHhhH--HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 654444333322 2233444444 3233444566677889999888888887744443 2444444433
No 35
>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]
Probab=99.97 E-value=6.1e-30 Score=238.58 Aligned_cols=273 Identities=18% Similarity=0.131 Sum_probs=208.4
Q ss_pred hHHHHhHHHHHHHHHHHchhhhHHHHHHH---HHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCcccc
Q 015718 96 SFLNVFLKKFHALYRFMRAYACAGVIIAT---TSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVD 172 (402)
Q Consensus 96 ~~~~~~~~~l~~~~~l~Rp~~~~~~~l~~---l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~D 172 (402)
+..+..+.++++|.|++|.+.++++.+.+ ....++|... ...+. ..-+.++-++.+++++++|.+||+.|+|+|
T Consensus 55 s~~~~~p~r~~pYaqLmRldkPiGTwLLywPCtWSIamaAda--g~~p~-~~mL~LFG~GAllMRgAGCtINDlwDkdlD 131 (353)
T KOG1381|consen 55 SLVASSPKRWKPYAQLMRLDKPIGTWLLYWPCTWSIAMAADA--GLLPS-IKMLALFGVGALLMRGAGCTINDLWDKDLD 131 (353)
T ss_pred hhhhcCCccchhHHHHHhcCCCceeeeeecchHHHHHhccCC--Cccch-hHHHHHhcccHHHhccCCceehhhhhhhhh
Confidence 44445556699999999999999998844 3455666431 11111 111223446779999999999999999999
Q ss_pred ccCCC--CCcccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHH
Q 015718 173 KVNKP--YLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVS 250 (402)
Q Consensus 173 r~nk~--~RPlasG~is~~~a~~~~~~~~~~~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~ 250 (402)
...+| .||++||++|+++|+.+..+.+.+++.+...+|+....+ ...++.+.+.|+. +||.++..+++.+.
T Consensus 132 ~KVeRtklRPlAsG~ls~~qaI~fL~~ql~~gLgiLlqLn~ysi~l-g~~sl~~v~~ypl------~kr~TY~pq~vLgl 204 (353)
T KOG1381|consen 132 AKVERTKLRPLASGSLSPRQAIGFLGAQLSLGLGILLQLNWYSIAL-GASSLALVITYPL------MKRFTYWPQLVLGL 204 (353)
T ss_pred hhHhhhcccccccCCcchhHHHHHHHHHHHHhHHHHHhccHHHHHh-cccccccEEEeeh------hhhcchhHHHHHhh
Confidence 98665 899999999999999999999999999999999766543 3566777888996 89999988877753
Q ss_pred --hhhHHhHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHH
Q 015718 251 --LNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSV 328 (402)
Q Consensus 251 --~~g~l~~lg~~~~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~ 328 (402)
+||.+. | ..++.|.. .+...+.+++...+|++.++++|++||.++|.+.|+|+.+.++|++.-.|+.
T Consensus 205 tfnwGAll--G-----w~A~~g~~---~~s~~~plYls~v~Wtl~YDTIYAHQDK~dDvk~gvkSTALrfG~nTK~wl~- 273 (353)
T KOG1381|consen 205 TFNWGALL--G-----WCALKGSL---SPSAVLPLYLSGVCWTLIYDTIYAHQDKRDDVKIGVKSTALRFGDNTKPWLS- 273 (353)
T ss_pred hcchhhhh--c-----chhhcCcc---ChhhhhHHHHhhhhhhhhhhhhhhcccchhhhHhcchhhhhhcCCCCchHHh-
Confidence 344332 2 23445543 2333455677778899999999999999999999999999999998766665
Q ss_pred HHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH-HHHHHHH
Q 015718 329 SMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYM-FIWKLYY 392 (402)
Q Consensus 329 ~l~~~a~~~~i~~g~~~~~~~~~~~~~~g~~i~a~~l~~~~~~~d~~~~~~~~~f~~-~iw~l~~ 392 (402)
.+-......+..+|+.++..| .|+.++++.+..|.+|...+|++|+++|..+|. +.|.+++
T Consensus 274 gf~a~~ia~La~aG~~s~q~~---pyy~~lg~~~~~L~~~i~~vdiDnp~dC~k~f~sN~ntGli 335 (353)
T KOG1381|consen 274 GFGAAQIASLAAAGIASDQTW---PYYAALGAVAARLGSQIYKVDIDNPSDCWKKFKSNSNTGLI 335 (353)
T ss_pred hhhHHHHHHHHHhhhccCCCc---hHHHHHHHHHHHHHhheeeeecCChHHHHHHHHhcCcchHH
Confidence 566566667888999999998 445568888999999999999999998866654 4555544
No 36
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.96 E-value=4.1e-27 Score=232.36 Aligned_cols=231 Identities=13% Similarity=0.039 Sum_probs=172.7
Q ss_pred HHHHHHHHHchhhhHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCC----CCC
Q 015718 104 KFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK----PYL 179 (402)
Q Consensus 104 ~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~nk----~~R 179 (402)
+++.|++++||++...+.+|++.|.++|.....++++. ..+++++++++++.++|.+|||+|.+.|..++ +.|
T Consensus 2 ~~~~~~~~~Rp~tl~~s~~pvllG~a~a~~~~~~~~~~---~~ll~ll~~~~~~~~~N~~NDy~D~~~g~D~~~~~~~~~ 78 (317)
T PRK13387 2 SAKLFLKLVEIHTKIASFFPVILGTLFSLYVAKIFDWL---LFLAFMVAMLAFDIATTAINNYMDFKKALDTADYVGIGN 78 (317)
T ss_pred CHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCccHH---HHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccccCCcc
Confidence 36789999999999999999999988885333344432 25567788889999999999999987655543 689
Q ss_pred cccccccChHHHHHHHHHHHHHHHH----HHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhhHH
Q 015718 180 PLASGEISMGTGIAITLASALMSLA----YAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLL 255 (402)
Q Consensus 180 PlasG~is~~~a~~~~~~~~~~~l~----la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g~l 255 (402)
++++|.+|++++...+.++++++++ +.+..|+ .++...+++++.++.||. ||+++||++ +|++..++..|..
T Consensus 79 ~i~~~~ls~~~v~~~~~~~~~ia~~~Gl~L~~~~g~-~~l~igl~g~~~~~~Yt~--gP~~l~y~g-LGe~~v~i~~G~~ 154 (317)
T PRK13387 79 GIGQHGLKPRNVLTVILLMYVVAAILGVYLCMNTSW-LLLVIGLICFAIGILYTG--GPLPLSRMP-LGEIFSGLTMGFG 154 (317)
T ss_pred hhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcH-HHHHHHHHHHHHhhhhcC--CCcccccCc-cHHHHHHHHHHHH
Confidence 9999999999999988888877776 4455564 444445677888999995 899999999 5887776666655
Q ss_pred hHHHHHHHHHHHHhcCCCccCcHHH--------------------HHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceeh
Q 015718 256 TQFPVYVHIQKYVLGRPLEIFTRPL--------------------MFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLS 315 (402)
Q Consensus 256 ~~lg~~~~~~~~v~g~~~~~~~~~~--------------------~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlp 315 (402)
...+.+.. .... .+... ++..+.+.+.+...+++||++|+|+|++.|+||+|
T Consensus 155 ~v~g~~yv-----~t~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~ 226 (317)
T PRK13387 155 IFLLAVYI-----NTNT---ITIESLLFQGEMFTIQGNLIAIIAIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLV 226 (317)
T ss_pred HHHHHHHH-----hcCC---CchHHHHhcccchhhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeee
Confidence 54444322 1111 11111 12444566667778999999999999999999999
Q ss_pred hhhcHHHHHHHHHHHHHHHHHHHHHHHHhcCcch
Q 015718 316 VMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLA 349 (402)
Q Consensus 316 v~lG~k~a~~l~~~l~~~a~~~~i~~g~~~~~~~ 349 (402)
+++|+|+++++...+..++|+..+........+|
T Consensus 227 v~lG~~~a~~l~~~l~~~a~l~~~~~v~~g~lp~ 260 (317)
T PRK13387 227 YYIGREKGVVLFAILFYASYLAIAVIVLMGYISP 260 (317)
T ss_pred eeEcHHhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 9999999999998999888886665544333333
No 37
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=99.95 E-value=7.7e-26 Score=219.20 Aligned_cols=218 Identities=20% Similarity=0.181 Sum_probs=153.6
Q ss_pred HHHHHHHHchhhhHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHH-HHHHHHHHHHhhcccCccccccCCCCCcccc
Q 015718 105 FHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVP-AVLMHIYVVAINQLSDVEVDKVNKPYLPLAS 183 (402)
Q Consensus 105 l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~-~~l~~~a~~~~Nd~~D~e~Dr~nk~~RPlas 183 (402)
+|.+++++||.+|+...+|+..|+++|. +.++ +. +++..++ ....+.+.|.+|||+|.|.|+.|+|.+.. .
T Consensus 1 ~~~~~~~~rP~~wi~~a~pf~~g~~la~-~~~~--~~----~l~~~l~~~~~~n~am~~~Ndy~D~~~d~dn~r~~g~-~ 72 (282)
T PRK13105 1 IRQLLLSSRPISWINTAYPFAAAYLLAG-GEID--WL----FVVGTVFFLIPYNLAMYGINDVFDYESDLRNPRKGGV-E 72 (282)
T ss_pred ChhHHHhcccHHHhccHHHHHHHHHHHC-CCCC--hH----HHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCcccCCC-C
Confidence 3678999999999999999998988883 3332 22 2233333 23344444677999999999999775443 5
Q ss_pred cccChHHHHHHHHHHHHH-----HHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhhHHhHH
Q 015718 184 GEISMGTGIAITLASALM-----SLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQF 258 (402)
Q Consensus 184 G~is~~~a~~~~~~~~~~-----~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g~l~~l 258 (402)
|.+++++..........+ ++.+....+ +.++....++++.++.||. ||.|+|++++.|+++..+.......+
T Consensus 73 g~i~~~~~~~~~~~~~~~~~~~~~l~l~~~~~-~~~~~l~~~ai~~~~~YS~--~p~rlk~~gl~d~~t~~~~f~~~~v~ 149 (282)
T PRK13105 73 GAVLDRAMHRTTLWASVVTTVPFLVVLLAVGS-WASGLVLAVSVFAVVAYSA--PGLRFKERPFLDSLTSSTHFVSPALY 149 (282)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHhcC--CCccccccchHHHHHHHHHHHHHHHH
Confidence 889998874433333322 222333224 4444445677888999995 89999999999886554322111222
Q ss_pred HHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHHHHHHHH
Q 015718 259 PVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAA 338 (402)
Q Consensus 259 g~~~~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~~a~~~~ 338 (402)
|.+ .+ ++. .+...++....+.+|+.+++.+||+||+|+||+.|+||+|+++|+|++.+++..++.+++++.
T Consensus 150 G~~-----~~-~~~---~~~~~~l~~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~ 220 (282)
T PRK13105 150 GLV-----LA-GAP---FTAALWAVLAAFFLWGMASHAFGAVQDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLM 220 (282)
T ss_pred HHH-----Hh-hcc---ccHHHHHHHHHHHHHHHHHHHHHhCcchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHH
Confidence 222 22 332 344556666778889999999999999999999999999999999999999999998888877
Q ss_pred HHHH
Q 015718 339 VVVG 342 (402)
Q Consensus 339 i~~g 342 (402)
+..+
T Consensus 221 ~~~~ 224 (282)
T PRK13105 221 LALP 224 (282)
T ss_pred HHHH
Confidence 7554
No 38
>PLN02776 prenyltransferase
Probab=99.95 E-value=1.5e-25 Score=221.17 Aligned_cols=260 Identities=15% Similarity=0.032 Sum_probs=182.0
Q ss_pred HHchhhhHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCCC--CCcccccccCh
Q 015718 111 FMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKP--YLPLASGEISM 188 (402)
Q Consensus 111 l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~nk~--~RPlasG~is~ 188 (402)
++||.....+++..+.|+++|.+...+ +. .+++.+++..++++++|++||++|+|+|++|+| +||+|+|++|+
T Consensus 1 L~Kpri~~lv~~ta~~G~~lA~~~~~~--~~---~l~~~~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~ 75 (341)
T PLN02776 1 LSKARLSALVVATSGAGFVLGSGEAID--LP---GLGWTCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISV 75 (341)
T ss_pred CCcchhHHHHHHHHHHHHHHhcCCCCC--HH---HHHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCH
Confidence 367888888888888899888543333 21 245677899999999999999999999999774 99999999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhhHHhHHHHHHHHHHH
Q 015718 189 GTGIAITLASALMSLAY-AVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKY 267 (402)
Q Consensus 189 ~~a~~~~~~~~~~~l~l-a~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g~l~~lg~~~~~~~~ 267 (402)
++|+.+++++.++++.+ ++.+|+.+..++.+..++....|+. +||++.+. ..++...|.++++..| .+
T Consensus 76 ~~A~~~~~~l~~~g~~~l~~~~n~l~~~l~~~~~~ly~~vYt~------lKR~t~~~-~~lG~~~Ga~ppL~Gw----~A 144 (341)
T PLN02776 76 PHAVAWAVVVGAAGVALLAYKTNMLTAGLGAGNILLYAFVYTP------LKQIHPAN-TWVGAVVGAIPPLMGW----AA 144 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh------HccCCchh-HHHHHHHHHHHHHHHH----HH
Confidence 99999999999988854 5667876665543333444678994 89999765 4555555544443333 34
Q ss_pred HhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhh--cHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015718 268 VLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVML--GKERVFRLSVSMLSIAYGAAVVVGASS 345 (402)
Q Consensus 268 v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~l--G~k~a~~l~~~l~~~a~~~~i~~g~~~ 345 (402)
+.|+ ++...+++++.+.+|+..+.....+.|.|||+++|++++|+.- |++.++.+....+.+....++..+..
T Consensus 145 vtg~----~~~~~~~Lf~~~~~Wq~pHf~~la~~~~dDy~~ag~pmlpv~~~~g~~ta~~i~~~~~~l~~~~ll~~~~g- 219 (341)
T PLN02776 145 ASGQ----LDAGAMVLAAALYFWQMPHFMALAYMCRDDYAAGGYRMLSLADATGRRTALVALRNCLYLAPLGFLAYDWG- 219 (341)
T ss_pred HcCC----CCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCCcccCccccchHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 5554 4566677888899999988888899999999999999999976 45555554433332222222222111
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHcCCCCh-HHHHHHHHHHHHHHHH
Q 015718 346 PFLANKLITIIGHGILASIFWLRVRAVDLSDN-ASILSFYMFIWKLYYA 393 (402)
Q Consensus 346 ~~~~~~~~~~~g~~i~a~~l~~~~~~~d~~~~-~~~~~f~~~iw~l~~~ 393 (402)
..++ .++.++.++.+..+.+.++..+.+|+ ...+.|+.+++++...
T Consensus 220 ~~~~--~~~~~a~~l~~~~l~~~~~~~~~~~~~~ar~~F~~Sl~yL~~l 266 (341)
T PLN02776 220 VTSS--PFALEAALLTAYLAASAASFYREPTNANARKMFHGSLLYLPAF 266 (341)
T ss_pred hhhH--HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Confidence 1222 35556666666667777777755554 4667788888886543
No 39
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=99.95 E-value=3.4e-25 Score=215.50 Aligned_cols=222 Identities=17% Similarity=0.127 Sum_probs=168.5
Q ss_pred chhhhHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCcc--cccc--CCCCCcccccccCh
Q 015718 113 RAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVE--VDKV--NKPYLPLASGEISM 188 (402)
Q Consensus 113 Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e--~Dr~--nk~~RPlasG~is~ 188 (402)
||+++..++.|++.|.++|.... .+++. ..++++++.++++.++|.+|||+|.+ .|+. .+|.|++++|.+++
T Consensus 1 Rp~tl~~s~~pv~lG~ala~~~~-~f~~~---~~ll~~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~ 76 (284)
T TIGR00751 1 RPKTLPLAIAPIVAGTALAAWLH-AFVWL---VALLALATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITP 76 (284)
T ss_pred CCchHHHHHHHHHHHHHHHHHcC-CccHH---HHHHHHHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCH
Confidence 89999999999999998885432 45443 25677888999999999999999974 3543 35789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH----Hhch-----HHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhhHHhHHH
Q 015718 189 GTGIAITLASALMSLAYAV----MIRS-----PPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFP 259 (402)
Q Consensus 189 ~~a~~~~~~~~~~~l~la~----~l~~-----~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g~l~~lg 259 (402)
+++...+.+++++++.++. ..++ +++++..+++++.+++||. ||+++|++++ |++..++..|.+...|
T Consensus 77 ~~v~~~~~~~~~~a~~~Gi~l~~~~~~~~~~~~~~l~lg~~~~~~~~~Yt~--gP~~l~y~gL-GE~~v~i~~G~l~v~g 153 (284)
T TIGR00751 77 REVKTALITSVALGALSGLVLALLAAPNLSDLFWFIALGALCIAAAITYTV--GSKPYGYAGL-GDISVLVFFGPLAVLG 153 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHhHhhcC--CCCccccCch-HHHHHHHHHHHHHHHH
Confidence 9999988777776655543 3342 1444444567778899995 8999999985 7777777777666655
Q ss_pred HHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHHHHHHHHH
Q 015718 260 VYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAV 339 (402)
Q Consensus 260 ~~~~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~~a~~~~i 339 (402)
.+. ++.+ .++...++..+...+.+.+++.+||++|+|+|++.|+||+|+++|+|+++++...+...+|.+.+
T Consensus 154 ~~y-----vq~~---~~~~~~ll~sl~~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~ 225 (284)
T TIGR00751 154 TQY-----LQAH---RVDWVGILPAVATGLLACAVLNINNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTF 225 (284)
T ss_pred HHH-----HhcC---CCCHHHHHHHHHHHHHHHHHHHHcCcccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHH
Confidence 443 2222 24555555555677778889999999999999999999999999999999999898888888766
Q ss_pred HHHHhcCcch
Q 015718 340 VVGASSPFLA 349 (402)
Q Consensus 340 ~~g~~~~~~~ 349 (402)
........+|
T Consensus 226 ~~~~~~~~p~ 235 (284)
T TIGR00751 226 VFMLATPISW 235 (284)
T ss_pred HHHHHhhchH
Confidence 6544444444
No 40
>PLN02922 prenyltransferase
Probab=99.95 E-value=6.5e-25 Score=216.21 Aligned_cols=239 Identities=18% Similarity=0.202 Sum_probs=172.6
Q ss_pred HHHHHHHHHHHchhhhHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCcc--ccccCCCCC
Q 015718 102 LKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVE--VDKVNKPYL 179 (402)
Q Consensus 102 ~~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e--~Dr~nk~~R 179 (402)
.++++.|++.+||+++...+.|++.|.++|......+++. ..+++++++++++.++|.+|||+|.+ .|+.++..+
T Consensus 12 ~~~~~~w~~a~Rp~tl~~s~~pv~lG~a~A~~~~g~f~~~---~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~~~ 88 (315)
T PLN02922 12 LSRATLWWRAIKLPMYSVALVPLTVGAAAAYLQTGLFDAR---RYGTLLLSSVLVITWLNLSNDAYDADTGVDKNKKESV 88 (315)
T ss_pred ccHHHHHHHHhCcchHHHHHHHHHHHHHHHHHcCCCccHH---HHHHHHHHHHHHHHHHHHHhhhhHhccCcCcccCCCC
Confidence 4568889999999999999999999988886443445543 25678899999999999999999965 677432221
Q ss_pred cccccccChHHHHHHHHHHHHHHHHHHHHh----chHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhhHH
Q 015718 180 PLASGEISMGTGIAITLASALMSLAYAVMI----RSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLL 255 (402)
Q Consensus 180 PlasG~is~~~a~~~~~~~~~~~l~la~~l----~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g~l 255 (402)
.-..| |+++....+.+++++++...+.+ +.|.+++..+++++.+++||. ||+++|++++ |++..++.+|.+
T Consensus 89 ~~~~~--s~~~v~~~~~~~~~la~~g~~ll~~~~~~~~~l~iG~~g~~~~~~Yt~--gP~pl~y~gL-GE~~v~i~fG~l 163 (315)
T PLN02922 89 VNLVG--SRRGVLAAAIGCLALGAAGLVWASLVAGNIRVILLLAAAILCGYVYQC--PPFRLSYKGL-GEPLCFAAFGPL 163 (315)
T ss_pred CCccc--CHHHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHhc--CCcccccCcc-hHHHHHHHHHHH
Confidence 12234 89999888777776665322221 235555555678888999995 8999999997 666666666766
Q ss_pred hHHHHHHHHHHHHhcCC-C--ccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHH
Q 015718 256 TQFPVYVHIQKYVLGRP-L--EIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLS 332 (402)
Q Consensus 256 ~~lg~~~~~~~~v~g~~-~--~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~ 332 (402)
+..+.|.. ++...+.. . ..++...++..+.+.+++.+.+++||++|+|+|++.|+||+|+++|+|+++++...+..
T Consensus 164 ~v~g~y~~-~~~~~~~~~~~~~~~~~~~~l~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~ 242 (315)
T PLN02922 164 ATTAFYLA-LASGAGGSEMAILPLTPTVLSASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVVRWAVL 242 (315)
T ss_pred HHHHHHHH-hcccccccccccccccHHHHHHHHHHHHHHHHHHHHccCcchhhHHHcCccceeeEEChHHHHHHHHHHHH
Confidence 65655542 11000010 0 01244455666778888889999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHhcCcch
Q 015718 333 IAYGAAVVVGASSPFLA 349 (402)
Q Consensus 333 ~a~~~~i~~g~~~~~~~ 349 (402)
.+|...+........+|
T Consensus 243 ~~y~~~i~~v~~~~~p~ 259 (315)
T PLN02922 243 LLYSLLAALGLLKALPL 259 (315)
T ss_pred HHHHHHHHHHHHhhhhH
Confidence 89987766655444443
No 41
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=99.95 E-value=1.1e-25 Score=214.29 Aligned_cols=188 Identities=26% Similarity=0.397 Sum_probs=141.4
Q ss_pred HHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCcccccc--CCCCCcccccccChHHHHHHHHH
Q 015718 120 VIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKV--NKPYLPLASGEISMGTGIAITLA 197 (402)
Q Consensus 120 ~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~--nk~~RPlasG~is~~~a~~~~~~ 197 (402)
...+++.|...+.+...+ +. .....++++++.+.++|.+||+.|.|+|+. |||+||+++|+++++++...+.+
T Consensus 4 ~~~~~l~~~~~~~~~~~~--~~---~~~~~~l~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~~~~ 78 (257)
T PF01040_consen 4 SFLPVLAGLALASGGPFN--WP---IFLLGLLAVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIFALI 78 (257)
T ss_pred HHHHHHHHHHHHHcCCCC--HH---HHHHHHHHHHHHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHHHHHH
Confidence 345555554444332222 22 234455666789999999999999999999 89999999999999999999999
Q ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhhHHhHHHHHHHHHHHHhcCCCccCc
Q 015718 198 SALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFT 277 (402)
Q Consensus 198 ~~~~~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g~l~~lg~~~~~~~~v~g~~~~~~~ 277 (402)
+.++++.+++..+++.+.+. +++.+.+++|| ||+|+||++++++++.++.++..+.++++. .+.. .+
T Consensus 79 ~~~l~l~l~~~~~~~~~~~~-~~~~~~~~~Ys---~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~------~~~~---~~ 145 (257)
T PF01040_consen 79 LLLLGLLLALLLGPWFLLIL-LLGFLLGLLYS---PPLRLKRRPLWGELVVALVFGLLILLGAYA------AGGD---PP 145 (257)
T ss_pred HHHHHHHHHHhcCchhHHHH-HHHHHHHHHHh---hhhhhcceeccchhhHHHhhhHhhhhhhhh------cCCc---cc
Confidence 99999999988887655444 55666679999 788999999999998887666554444332 2221 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHH
Q 015718 278 RPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFR 325 (402)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~ 325 (402)
.+.++......++.......+|++|+|+|++.|+||+|+++|+++++.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~D~~~D~~~g~~Tl~v~~G~~~~~~ 193 (257)
T PF01040_consen 146 PPPFLLAIFFFLLIFAIMFFNDIRDIEGDRKAGRRTLPVLLGEKKARY 193 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCCcchHHHHHHHHHHH
Confidence 334444444566667777888999999999999999999999999887
No 42
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.94 E-value=8.2e-25 Score=214.42 Aligned_cols=233 Identities=14% Similarity=0.091 Sum_probs=176.0
Q ss_pred HhHHHHHHHHHHHchhhhHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCcc--ccccCCC
Q 015718 100 VFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVE--VDKVNKP 177 (402)
Q Consensus 100 ~~~~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e--~Dr~nk~ 177 (402)
...++++.|++.+||+++..++.|++.|.++|.....++++. ..++++++..+.+.++|.+|||+|.+ .|+. ++
T Consensus 7 ~~~~~~~~w~~a~RP~tl~asl~pv~lG~a~a~~~~~~f~~~---~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~-~~ 82 (304)
T PRK07419 7 MSPSRRKLWLAAIKPPMYSVAIMPILVGTAWALGETGVFRLD---QFITFLLAAILILAWENLSNDVFDADTGIDKN-KF 82 (304)
T ss_pred CCccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCccHH---HHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc-cc
Confidence 345678889999999999999999999988885433455543 25678889999999999999999976 6774 22
Q ss_pred CCcccccccChHHHHHHHHHHHHHHHHHH----HHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhh
Q 015718 178 YLPLASGEISMGTGIAITLASALMSLAYA----VMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNG 253 (402)
Q Consensus 178 ~RPlasG~is~~~a~~~~~~~~~~~l~la----~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g 253 (402)
. ...++..++++....+.+++++++.++ +..| |+++...+++++.+++||. ||+++|++++ |++..++.+|
T Consensus 83 ~-~~~~~~~~~~~v~~~~~~~~~~a~~~Gl~L~~~~g-~~~l~ig~~g~~~~~~YT~--gP~~l~y~gL-GE~~v~l~~G 157 (304)
T PRK07419 83 H-SVVNLTGNKSLVFWLANLFLLLGLLGILAIALQSD-WTVLGLVLLCCFLGYLYQG--PPFRLGYQGL-GEPLCFLAFG 157 (304)
T ss_pred c-CcccccCcHHHHHHHHHHHHHHHHHHHHHHHHhhc-HHHHHHHHHHHHHhheccC--CCcccCCCCc-hHHHHHHHHH
Confidence 2 233444568888887777776666544 3345 4555555677888999995 8999999996 7777777777
Q ss_pred HHhHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHHH
Q 015718 254 LLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSI 333 (402)
Q Consensus 254 ~l~~lg~~~~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~~ 333 (402)
.++..+.+.. +.. .++...++..+.+.+.+....++||++|+|+|++.|+||+|+++|+|++++++..+...
T Consensus 158 ~l~v~g~~yv-----~t~---~~~~~~~~~sl~~gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ 229 (304)
T PRK07419 158 PLAVAAALYS-----QTP---SWSLIPLAASIILGLATSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGL 229 (304)
T ss_pred HHHHHHHHHH-----hcC---CCCHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHcCCcceeeeechHhHHHHHHHHHHH
Confidence 6666655432 222 24555566666777888889999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHhcCcch
Q 015718 334 AYGAAVVVGASSPFLA 349 (402)
Q Consensus 334 a~~~~i~~g~~~~~~~ 349 (402)
+|...+........+|
T Consensus 230 ay~~~i~~v~~g~~p~ 245 (304)
T PRK07419 230 IYALELLPVLLGFWPW 245 (304)
T ss_pred HHHHHHHHHHHhhhHH
Confidence 8987766555443444
No 43
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=99.94 E-value=3e-25 Score=216.15 Aligned_cols=223 Identities=20% Similarity=0.205 Sum_probs=151.7
Q ss_pred HHHHHHHHHchhhhHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCCCCCcccc
Q 015718 104 KFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLAS 183 (402)
Q Consensus 104 ~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~nk~~RPlas 183 (402)
-+++++++.|+.+..........+.. .....+... ....+++.++.+.++|.+||+.|+|+|+.|+|+||.++
T Consensus 3 ~~~~~~~~~~~~~~~~a~~~~~l~~~--~~~~~~~~~-----~~~~~~~~~~~~~~~~~~N~~~D~~~D~~n~~~R~~~s 75 (285)
T PRK12872 3 LLFAFLKLFRYGNLLIAALGQSLVYM--ASLLLGLPI-----SWLLLLITFLIAAAVYIINYLTDLEEDIINKPERVVFS 75 (285)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHH--HHHHHcChh-----HHHHHHHHHHHHHHHHHhhhhcCCchhhcCCCchHHHH
Confidence 46789999999877665554433211 100111111 22455677888999999999999999999999999986
Q ss_pred cccChHHHHHHHHHHHHHHHHHH-HHhchHHHHHHHHHHHHHHhhccCCcccc-ccccccchhHHHHHHhhhHHhHHHHH
Q 015718 184 GEISMGTGIAITLASALMSLAYA-VMIRSPPFIWAVIAWIFVGTAYSVQLPLL-RWKGNSFLAAFCMVSLNGLLTQFPVY 261 (402)
Q Consensus 184 G~is~~~a~~~~~~~~~~~l~la-~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~-rlKr~~~l~~l~~~~~~g~l~~lg~~ 261 (402)
++...+.+..+..+...+++.+. ...|++.+. ..+++.++++.||. ||. ++||.+.+++++++..+|..+.++.+
T Consensus 76 ~~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~Ys~--~~~~~lk~~p~~~~~~vg~~~g~~~~~~~~ 152 (285)
T PRK12872 76 ETKAYGLFLLLNVLGLYLGAYLLAVIGGPKFAL-IFIIPLILGILYSV--FFKRRLKRIPLFKNLVVSLLWALSPLILGV 152 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH-HHHHHHHHHHHHhC--hhHHHHhhhhhHhhHHHHHHHHHHHHHHHH
Confidence 55444444444444444444442 233554443 34556677999995 444 58999999999998888765544322
Q ss_pred HHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHHHHHHHHHHH
Q 015718 262 VHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVV 341 (402)
Q Consensus 262 ~~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~~a~~~~i~~ 341 (402)
. ..+. .++...++..+..+++.+.++.++|++|+|+|+++|+||+|+++|+|++++++..+..+.+...+..
T Consensus 153 ~-----~~~~---~~~~~~~~~~~~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~~~t~~~~~~~~~~~~~~~~~~ 224 (285)
T PRK12872 153 Y-----YYQL---TIFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKFLLILNLLFLILLILG 224 (285)
T ss_pred H-----hccc---ccchHHHHHHHHHHHHHHHHHHHHhcccchhHHHcCCcccchhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1122 1233344445556677788899999999999999999999999999999999988887777766654
Q ss_pred HHh
Q 015718 342 GAS 344 (402)
Q Consensus 342 g~~ 344 (402)
...
T Consensus 225 ~~~ 227 (285)
T PRK12872 225 VYT 227 (285)
T ss_pred HHH
Confidence 443
No 44
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=99.94 E-value=1e-24 Score=211.72 Aligned_cols=221 Identities=19% Similarity=0.291 Sum_probs=142.4
Q ss_pred hHHHHHHHHHHHchhhhHHHHHHHHHHHHcccccCCC-CchHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCCCCC
Q 015718 101 FLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLAD-LTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYL 179 (402)
Q Consensus 101 ~~~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~-~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~nk~~R 179 (402)
.++.++.++++.||++|..+..|.+.|.++|....++ +++. +..++..++ +..+...|++||++|+|+||.|+|++
T Consensus 4 ~~~~~~~l~~l~RP~~~~~~~~p~l~G~~lA~~~~~~~~~~~-~~~ll~~~~--i~~Nl~~y~iND~~D~D~Dr~~prk~ 80 (282)
T PRK12875 4 LGDRLRYLLVLSRPRFWLYLAGPVVVGVAYAADSVADLFSPA-AVALFAYFL--FPANVFLYGVNDVFDADTDELNPKKD 80 (282)
T ss_pred hHHHHHHHHHHhCccchHHHHHHHHHHHHHHhccCcccccHH-HHHHHHHHH--HHHHHHHhcchhhhhhhccccCCCcc
Confidence 4567888999999999999999999999998654322 2321 111111111 23445667799999999999987755
Q ss_pred c---ccccccChHHHHHH-HHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhhHH
Q 015718 180 P---LASGEISMGTGIAI-TLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLL 255 (402)
Q Consensus 180 P---lasG~is~~~a~~~-~~~~~~~~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g~l 255 (402)
. ++ .+.+.+... ......+++.+.+..++... ..++.++++.+.||. ||+|+|++++.+..+.+.. .+
T Consensus 81 ~~r~~~---~s~~~~~~~~~~l~~~l~l~l~~~~~~~~~-~~ll~~i~~~~~YS~--pP~rlk~~p~~~~~~~g~~--~~ 152 (282)
T PRK12875 81 REREVR---YRGDRRVLVAVALSGALALAFLLVLPPAAW-PALLAFLVLSVEYSA--PPLRFKTTPVLDSLSNGLY--IL 152 (282)
T ss_pred CCCCcc---HHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHcC--CCccchhccHHHHHHHHHH--HH
Confidence 3 33 111221111 12222333444334343222 233567788999995 8999999998776543221 11
Q ss_pred hHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHHHHH
Q 015718 256 TQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAY 335 (402)
Q Consensus 256 ~~lg~~~~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~~a~ 335 (402)
+.++.| ....|. .+... +.+..++|+.+.+++||+||+|+|++.|+||+|+++|+|++++++..+..++.
T Consensus 153 ~~~~~y----~~~tg~----~~~~~--l~~a~~l~~~~~~~in~i~Die~D~~aGi~Tlav~lG~~~a~~~~~~~~~~a~ 222 (282)
T PRK12875 153 PGVAAY----ALVSGS----LPPLL--AVAGGWLWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRTYAYCAACWLLAA 222 (282)
T ss_pred HHHHHH----HHHcCC----CcHHH--HHHHHHHHHHHHHHHHhccCHHHHHHcCCccchhhccHhhHHHHHHHHHHHHH
Confidence 222222 112232 23322 33445789999999999999999999999999999999999988877777776
Q ss_pred HHHHHHH
Q 015718 336 GAAVVVG 342 (402)
Q Consensus 336 ~~~i~~g 342 (402)
.+.+..+
T Consensus 223 ~~~~~~~ 229 (282)
T PRK12875 223 AAFAAVD 229 (282)
T ss_pred HHHHHHH
Confidence 6666655
No 45
>PRK08238 hypothetical protein; Validated
Probab=99.94 E-value=8.2e-26 Score=233.94 Aligned_cols=222 Identities=18% Similarity=0.245 Sum_probs=170.6
Q ss_pred cccc-CCCceEecCCccccccccCCCCCCcccchhHHHHhHHHHHHHHHHHchhhhHHHHHHHHHHHHcccccCCCCchH
Q 015718 63 ASSR-NCKPFNSHRAPVTLQDGYASKSEDDDHSNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPA 141 (402)
Q Consensus 63 ~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~ 141 (402)
..|+ ++++++||++++.++.+++.+ .++..+++.+..+++|++++|||||.+|.+.++ +.+++ +.+.+. .
T Consensus 153 p~~~~A~~av~Vn~~~~l~~~a~~~~-----~~~~~~~~~~~~~~~~~~l~Rp~q~~kn~l~~~-p~l~a-~~~~~~--~ 223 (479)
T PRK08238 153 PVWAAARRAIVVGASPGVARAARALG-----PVERVFPPRPARLRTWLKALRVHQWAKNLLVFV-PLLAA-HQFGDL--Q 223 (479)
T ss_pred HHHHhCCCeEEECCCHHHHHHHHHcC-----CcceecCCCchHHHHHHHHhCCcHHHHHHHHHH-HHHHh-cccCCh--H
Confidence 7899 999999999998777776444 677778888899999999999999999999876 44544 444332 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCccccccC--CCCCcccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Q 015718 142 YFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVN--KPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVI 219 (402)
Q Consensus 142 ~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~n--k~~RPlasG~is~~~a~~~~~~~~~~~l~la~~l~~~~~~~~l~ 219 (402)
.+...++++++++++++++|++||++|+|+||+| ||+||+|||++|+++|+.++.+++++|+.+++.+|+ .+...++
T Consensus 224 ~~~~~~~~f~~~~l~~sa~~~~ND~~D~e~Dr~~~rk~~RPlasG~is~~~A~~~~~~l~~~~~~l~~~l~~-~~~~~~~ 302 (479)
T PRK08238 224 ALLAALLAFLAFSLCASAVYILNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLLLLAGLALALALGP-AFLLVLL 302 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHH
Confidence 2334667888999999999999999999999997 789999999999999999999999999999998886 4444556
Q ss_pred HHHHHHhhccCCccccccccccchhHHHHHHhhhHHhHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhh
Q 015718 220 AWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKD 299 (402)
Q Consensus 220 ~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g~l~~lg~~~~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~d 299 (402)
.+++++++||. ++||+++++++++++..+.-+..|+ ...+. +.+.+++. +..++.....+.|.
T Consensus 303 ~~~~~~~~Ys~-----~lKr~~~~~~~~la~~~~lr~~~G~------~a~~~-----~~s~wll~-~~~~~~l~la~~KR 365 (479)
T PRK08238 303 AYLALTLAYSL-----RLKRKVLVDVLTLAALYTLRIIAGA------AAIGV-----ALSFWLLA-FSMFFFLSLALVKR 365 (479)
T ss_pred HHHHHHHHhhH-----HhcCCccccchHHHHHHHHHHHHHH------HHhcc-----CHHHHHHH-HHHHHHHHHHHHHh
Confidence 78888999996 6999999999888754432222221 12222 33334332 22233445668899
Q ss_pred hcChhhhhhcCC
Q 015718 300 LHDVDGDKKFGI 311 (402)
Q Consensus 300 i~D~egD~~~G~ 311 (402)
..|.++++..|.
T Consensus 366 ~~El~~~~~~~~ 377 (479)
T PRK08238 366 YTELRRALQRGK 377 (479)
T ss_pred HHHHHHHHhcCC
Confidence 999998888885
No 46
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=99.93 E-value=2.1e-23 Score=203.02 Aligned_cols=223 Identities=13% Similarity=0.085 Sum_probs=166.0
Q ss_pred HHHHHchhhhHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCcc--ccccCC--CCCcccc
Q 015718 108 LYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVE--VDKVNK--PYLPLAS 183 (402)
Q Consensus 108 ~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e--~Dr~nk--~~RPlas 183 (402)
|++.+||+++..++.|++.|.++|.....++++. ..++++++..+.+.++|.+|||+|.+ .|+.+. +.|..
T Consensus 2 w~~a~Rp~tl~~s~~pv~lG~alA~~~~~~f~~~---~~ll~li~~l~~q~~~N~~Ndy~D~~~G~D~~~~~~~~~~~-- 76 (285)
T TIGR02235 2 WLAAIKPPLYSVAVMPILVGTAVAWGQGGVFHLD---RFALFLIAAILILAWINLTNDVFDSDTGIDRFKLHSIVNLT-- 76 (285)
T ss_pred hHHHhhhhHHHHHHHHHHHHHHHHHHcCCCcCHH---HHHHHHHHHHHHHHHHHHHHhHHHHhcCCCccccCCccccc--
Confidence 6789999999999999999998885433345543 24567789999999999999999965 477422 23333
Q ss_pred cccChHHHHHHHHHHHHHHHHHH----HHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhhHHhHHH
Q 015718 184 GEISMGTGIAITLASALMSLAYA----VMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFP 259 (402)
Q Consensus 184 G~is~~~a~~~~~~~~~~~l~la----~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g~l~~lg 259 (402)
.++++....+.++.++++.++ +..+ |+++...+++++.++.||. ||+++|++++ |++..++.+|.+...+
T Consensus 77 --~~~~~v~~~~~~~~~ia~~~g~~L~~~~~-~~~l~lg~~g~~~~~~Yt~--gP~~l~y~gL-GE~~v~l~~G~l~v~g 150 (285)
T TIGR02235 77 --GSRSLVFWLANFFLLIGLVGIAALSWRWQ-ITVLALVGLCCFLGYLYQG--PPFRLGYQGL-GEPICWLCFGPLAIAA 150 (285)
T ss_pred --CcHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHhhcC--CCcccCCCCc-cHHHHHHHHHHHHHHH
Confidence 356777766666665555444 3344 4555555678888999995 8999999996 7777777777666655
Q ss_pred HHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHHHHHHHHH
Q 015718 260 VYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAV 339 (402)
Q Consensus 260 ~~~~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~~a~~~~i 339 (402)
.+. ++.. .+++..++..+..++.+.+..++||++|+|+|++.|+||+|+++|+|++.++...+...+|.+.+
T Consensus 151 ~~y-----vqt~---~~~~~~~l~sl~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i 222 (285)
T TIGR02235 151 ALY-----AQSQ---SFSLIPWKASILVGLATTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLL 222 (285)
T ss_pred HHH-----HhCC---cCcHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCcceeheecHHhHHHHHHHHHHHHHHHHH
Confidence 543 2222 24666666666778888889999999999999999999999999999999999999988998766
Q ss_pred HHHHhcCcch
Q 015718 340 VVGASSPFLA 349 (402)
Q Consensus 340 ~~g~~~~~~~ 349 (402)
........+|
T Consensus 223 ~~v~~~~~p~ 232 (285)
T TIGR02235 223 IAVIGGFLPW 232 (285)
T ss_pred HHHHHhhhHH
Confidence 5544433444
No 47
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=99.93 E-value=2.9e-23 Score=200.02 Aligned_cols=231 Identities=16% Similarity=0.152 Sum_probs=170.1
Q ss_pred HHHHHHHHHchhhhHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCcc--cccc----CCC
Q 015718 104 KFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVE--VDKV----NKP 177 (402)
Q Consensus 104 ~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e--~Dr~----nk~ 177 (402)
+.+.|++++|||++...+.|++.|.++|......+++ +..+++++++.+++..+|..|||.|.+ .|.. .+-
T Consensus 7 ~~~~wl~~~rP~Tl~aai~Pv~~G~a~A~~~~~~f~~---~~~ll~Li~~~~iq~~vN~~NdY~D~~KG~D~~g~~~~~~ 83 (303)
T COG1575 7 KTQLWLELARPKTLPAAIAPVIVGTALAFWYGKSFNL---LVALLALIAAILLQILVNLANDYFDYKKGTDTHGPDRLKQ 83 (303)
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHHHHHHHccchHH---HHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCccccc
Confidence 4478999999999999999999999998654333432 236678899999999999999999964 5643 233
Q ss_pred CCcccccccChHHHHHHHHHHHHHHHHHH----HHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhh
Q 015718 178 YLPLASGEISMGTGIAITLASALMSLAYA----VMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNG 253 (402)
Q Consensus 178 ~RPlasG~is~~~a~~~~~~~~~~~l~la----~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g 253 (402)
++-+...+++++..+.+.+.++..+.+++ ...++ .+++...++++.++.|+. +|+++.+.++ |++..+...|
T Consensus 84 ~g~I~~~~~k~~~~l~l~l~~~~g~~llg~~~~~~s~~-~~l~lG~l~~~~g~~YTg--Gp~PlgY~gL-GEi~~~vffG 159 (303)
T COG1575 84 SGLIVRQSMKPALILSLALFLLAGLALLGVILAALSDW-LVLLLGLLCIAAGILYTG--GPFPLGYMGL-GEIFVGVFFG 159 (303)
T ss_pred cceeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHheeeecc--CCcCcccCCH-HHHHHHHHHH
Confidence 45555566777777776666555544443 33343 455556788888999995 7888999886 6666666667
Q ss_pred HHhHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHHH
Q 015718 254 LLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSI 333 (402)
Q Consensus 254 ~l~~lg~~~~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~~ 333 (402)
.+...+.+. ++.+ .+++..++..+.+.+.+...+..|+++|+|+|++.|++|+|+++|+++++.+...++..
T Consensus 160 ~l~v~g~~y-----iqt~---~~~~~~ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~ 231 (303)
T COG1575 160 PLIVLGAYY-----IQTG---RLSWAILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVV 231 (303)
T ss_pred HHHHHHHHH-----Hhcc---cchHHHHHHHHHHHHHHHHHHHhcccccchhHHhcCCcceeeeeccHhHHHHHHHHHHH
Confidence 655544442 2222 24555555566677777888999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHhcCcch
Q 015718 334 AYGAAVVVGASSPFLA 349 (402)
Q Consensus 334 a~~~~i~~g~~~~~~~ 349 (402)
+|.+.++........|
T Consensus 232 a~l~~~~~~i~~~~~~ 247 (303)
T COG1575 232 AYLAIVIFVILGLFPV 247 (303)
T ss_pred HHHHHHHHHHHHhchH
Confidence 8887666544445544
No 48
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=7.8e-24 Score=203.44 Aligned_cols=268 Identities=16% Similarity=0.151 Sum_probs=186.6
Q ss_pred hHHHHHHHHHHHchhhhHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCCC--C
Q 015718 101 FLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKP--Y 178 (402)
Q Consensus 101 ~~~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~nk~--~ 178 (402)
.+.++|+|+++++|..+..+.+..+.|+++|..... ++. .++++.++..++..+++++|+++|+|+|++.+| +
T Consensus 14 ~~~~~k~yl~LtKPrvi~L~~it~~~g~~lA~~~~~--~~~---l~~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~ 88 (304)
T COG0109 14 SRSTIKDYLQLTKPRVISLLLITAFAGMLLAPRGSI--NPL---LLLLTLLGGALGAGGAGAFNMYIDRDIDALMERTRK 88 (304)
T ss_pred hHHHHHHHHHHhCCeeeehHHHHHHHHHHHcccccc--cHH---HHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhccC
Confidence 557899999999999999999999999999975222 222 256788899999999999999999999999765 9
Q ss_pred CcccccccChHHHHHHHHHHHHHHHHHH-HHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhhHHhH
Q 015718 179 LPLASGEISMGTGIAITLASALMSLAYA-VMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQ 257 (402)
Q Consensus 179 RPlasG~is~~~a~~~~~~~~~~~l~la-~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g~l~~ 257 (402)
||+++|++++++++.++.++.++|+.+. +..|+.+-.+.++..++....||. .+||++... ++++...|..++
T Consensus 89 RP~~~G~i~p~~al~fgl~L~~~g~~~l~~~vn~laa~l~~~gi~~Yv~vYT~-----~lKR~T~~N-iviGg~aGa~Pp 162 (304)
T COG0109 89 RPLVTGLISPREALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYVVVYTL-----WLKRRTPQN-IVIGGFAGAMPP 162 (304)
T ss_pred CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-----hccCCcccc-eeeeeccccccc
Confidence 9999999999999999999999999887 667765555555566777889997 589998754 344444454443
Q ss_pred HHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHHHHHH-
Q 015718 258 FPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYG- 336 (402)
Q Consensus 258 lg~~~~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~~a~~- 336 (402)
+..| .++.|+ .+...+++.+++++|+..+-..-++.-.||.+++|+..+|++-|++.+++.. ..+.+...
T Consensus 163 liGw----aAvtg~----~~~~a~~Lf~IiF~WtPpHfwALAl~~~~DY~~AgiPMlPvv~G~~~t~~~I-~~y~~~l~~ 233 (304)
T COG0109 163 LIGW----AAVTGS----ISLGAILLFAIIFLWTPPHFWALALKYKDDYKAAGIPMLPVVKGERRTKRQI-LLYTLALAP 233 (304)
T ss_pred ccee----eeeeCC----CCchHHHHHHHHHHhccHHHHHHHHHHHHHHHHcCCCcccccccHHHHHHHH-HHHHHHHHH
Confidence 3222 345665 3555666777888898666555567777888999999999999999888874 33333322
Q ss_pred HHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHH-cCCCC-hHHHHHHHHHHHHHH
Q 015718 337 AAVVVGASSPFLANKLITIIGHGILASIFWLRVRA-VDLSD-NASILSFYMFIWKLY 391 (402)
Q Consensus 337 ~~i~~g~~~~~~~~~~~~~~g~~i~a~~l~~~~~~-~d~~~-~~~~~~f~~~iw~l~ 391 (402)
..+........+| .|.+-..++...+++...+ ..-+| +.+.+.|..++-++.
T Consensus 234 ~sl~~~~~g~~g~---~Y~v~a~~l~~~~l~~a~~~~~~~~~~~A~klF~~S~~yL~ 287 (304)
T COG0109 234 VSLLLALLGYVGY---LYLVVATLLGAWFLALAWKLYRKDDRKWARKLFKYSIIYLA 287 (304)
T ss_pred HHHHHHHhccchh---HHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 2222222111222 3444444444444444332 22233 446677766655443
No 49
>PRK13591 ubiA prenyltransferase; Provisional
Probab=99.92 E-value=8.8e-23 Score=198.39 Aligned_cols=175 Identities=21% Similarity=0.189 Sum_probs=127.8
Q ss_pred HHHHHHHHHHhhcccCccccccCCCCCcccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCC-
Q 015718 153 AVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQ- 231 (402)
Q Consensus 153 ~~l~~~a~~~~Nd~~D~e~Dr~nk~~RPlasG~is~~~a~~~~~~~~~~~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~- 231 (402)
..+...++|++||++|+|+|++|||+||.+ +++.+..+..+..++|+.+++..|+ .+ ++ +++.+.++.||.+
T Consensus 67 ~~L~~~s~~~iNd~~D~eiD~IN~P~r~~~----s~~~a~~ls~la~llGl~La~~~g~-~l-l~-ll~~l~g~lYS~Gl 139 (307)
T PRK13591 67 GGLIIYSVYTLDRALDSEEDAVNRSELIGS----NKKIGLLVSLLAFLLGTYILAMDGM-LL-LA-FLPFITGYLYSKGI 139 (307)
T ss_pred HHHHHHHHHHHhhhccchhhhccCcccccc----CHHHHHHHHHHHHHHHHHHHHHHhH-HH-HH-HHHHHHHHHhcCCC
Confidence 345677899999999999999999999987 7888999999999999999998885 33 22 4666779999953
Q ss_pred -ccc--cccccccchhHHHHHHhhhHHhHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhh
Q 015718 232 -LPL--LRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKK 308 (402)
Q Consensus 232 -lpp--~rlKr~~~l~~l~~~~~~g~l~~lg~~~~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~ 308 (402)
.+| +|+|+.+.+|++.++..+|.....+. +. ..+. . .......++.....++++.+||++|+|||++
T Consensus 140 k~~P~plklK~~~glGnl~V~i~~G~~i~g~~----g~-~~~~----~-~~~~~i~l~~~~~l~~~~iindirDiEGDr~ 209 (307)
T PRK13591 140 KIGKFALKLKGGLGVKNIVVGITWGGFIAGIA----GS-YCGS----L-IPVGLIFLFFGVKLFINSCVYDFKDVKGDTL 209 (307)
T ss_pred CCCCccccccCCCchhHHHHHHHHHHHHHHHH----Hh-hhhh----H-HHHHHHHHHHHHHHHHHHHHHHhhhhHhHHH
Confidence 224 48899999999999887775332110 00 0111 0 1111111112222256778999999999999
Q ss_pred cCCceehhhhcHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015718 309 FGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGAS 344 (402)
Q Consensus 309 ~G~~Tlpv~lG~k~a~~l~~~l~~~a~~~~i~~g~~ 344 (402)
.|+||+|+++|+++++++...+..+++++.+.....
T Consensus 210 ~G~kTLPV~lG~~~A~~l~~~l~~~~~l~li~~~~~ 245 (307)
T PRK13591 210 AGIKTLPVSLGEQKTRNLLLGIHLFSHLVLGIALIF 245 (307)
T ss_pred cCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988888888765554443
No 50
>PRK13592 ubiA prenyltransferase; Provisional
Probab=99.91 E-value=1.7e-22 Score=194.83 Aligned_cols=176 Identities=12% Similarity=0.146 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCccccccCCCCCcccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Q 015718 145 GLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFV 224 (402)
Q Consensus 145 ~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~nk~~RPlasG~is~~~a~~~~~~~~~~~l~la~~l~~~~~~~~l~~~~~l 224 (402)
+.+++++..++...++|++||++|+|+||+|+|+||+|||++|+++++.++.++.++++.++... .... ...+.
T Consensus 47 ~~~l~~~~vf~~~~~gniiNDy~D~EIDrIN~P~RPLPsG~VS~~~A~~~si~L~~~~l~L~~l~-~i~i-----~~~~i 120 (299)
T PRK13592 47 QEFVGVFTVFGFWMILRIADDFKDYETDRRLFPHRALPSGRVKKKDLAIALSFIVAVSVLLNVLF-MNNV-----GWFLF 120 (299)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhhHHHhhhcCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHH-----HHHHH
Confidence 45566667778889999999999999999999999999999999999999988877777766543 1111 12223
Q ss_pred Hhhc-----cCCccccccccccchhHHHHHHhhhHHh--HHHHHHH-HHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHH
Q 015718 225 GTAY-----SVQLPLLRWKGNSFLAAFCMVSLNGLLT--QFPVYVH-IQKYVLGRPLEIFTRPLMFATAFISCFCVVIAF 296 (402)
Q Consensus 225 ~~~Y-----s~~lpp~rlKr~~~l~~l~~~~~~g~l~--~lg~~~~-~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~ 296 (402)
.+.| +. ++|+.++.+|+.++...|..+ .++++.. .+....|.+ ......+++.+..++.+.++++
T Consensus 121 ~~lY~~lm~a~-----~~K~~~l~gNl~Va~ltg~~f~~g~~~~~~~fg~~~~g~~--~~~~~~~~l~l~afl~~l~rEI 193 (299)
T PRK13592 121 LYIYGTLMSFW-----FFKRDKIQNSLPLALVTHNPVMMILNLYTISFVCYKYNLP--LLSLPTVLLAFTMYFPSLIWEV 193 (299)
T ss_pred HHHHHHHHHHH-----HHcccCCCcchhhhhhccchhhhchhhhhhhhhhhhcccc--hhhHHHHHHHHHHHHHHHHHHH
Confidence 3444 64 689999999999887665433 2222221 011112221 1111112333444555688999
Q ss_pred HhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHHHHH
Q 015718 297 IKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAY 335 (402)
Q Consensus 297 i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~~a~ 335 (402)
.+|++| |||++ |.+|+|+++|.|++.++..++..+..
T Consensus 194 ~KdieD-~gd~~-~~~Tlpi~~G~kkA~~ia~~l~ii~v 230 (299)
T PRK13592 194 CRKIRA-PKDET-EYVTYSKLFGYKKATRFIEVVTLLDI 230 (299)
T ss_pred HHhhcC-Ccccc-CCeeechhccchhHHHHHHHHHHHHH
Confidence 999999 88886 59999999999999888766554443
No 51
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=99.88 E-value=1e-21 Score=191.53 Aligned_cols=143 Identities=20% Similarity=0.297 Sum_probs=113.8
Q ss_pred hHHHHHHHHHHHchhhhHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccC--CCC
Q 015718 101 FLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVN--KPY 178 (402)
Q Consensus 101 ~~~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~n--k~~ 178 (402)
..+++++|++++|||+|.++.+.+..+ +++.. ..+. ..+...++++++++++++++|++||++|+|+||+| ||+
T Consensus 7 ~~~~l~~~l~L~RP~~w~~nll~~~~~-~~a~~-~~~~--~~~~~~llafl~~~l~~sa~y~iND~~D~e~Dr~~prk~~ 82 (295)
T PRK12324 7 PKNLLAGYLKLLRPKQWIKNLFVFAAP-IFAGN-LLNP--GALLKVLLAFVLFCLASSAVYLVNDIRDVEADRLHPTKRN 82 (295)
T ss_pred hHHHHHHHHHHhCchHHHHHHHHHHHH-HHHHh-hccc--chHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCCCCC
Confidence 345788999999999999999877643 44422 2221 11223556777888899999999999999999995 789
Q ss_pred CcccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhh
Q 015718 179 LPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNG 253 (402)
Q Consensus 179 RPlasG~is~~~a~~~~~~~~~~~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g 253 (402)
||+|||++|+++++.++.++.++|+.+++.+|+..+.. .+.++++.++||. ++||++.+++++++...+
T Consensus 83 RPlasG~is~~~A~~~~~~l~~~~l~la~~l~~~~~~~-~~~~~~~~~~Ys~-----~lK~~~~~d~l~va~~~~ 151 (295)
T PRK12324 83 RPIASGVVSVSLAYILAVVLLVASLALAYLLSPKLALV-LLVYLVLNLAYSF-----KLKHQPVLDVFCIASGFV 151 (295)
T ss_pred CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhH-----HhcCCchhhHHHHHHHHH
Confidence 99999999999999999999999999998888654443 4677888899996 689999999988865433
No 52
>KOG1380 consensus Heme A farnesyltransferase [Coenzyme transport and metabolism]
Probab=99.35 E-value=1.9e-12 Score=124.52 Aligned_cols=208 Identities=15% Similarity=0.152 Sum_probs=138.0
Q ss_pred hHHHHHHHHHHHchhhhHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCCC--C
Q 015718 101 FLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKP--Y 178 (402)
Q Consensus 101 ~~~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~nk~--~ 178 (402)
..+..+.|+|+.+|.--+..++....|+++|...+ +++ .+++..++..++.+++|.+||+++.+.|++.+| +
T Consensus 90 p~k~~~~y~eLsK~rLT~LVV~tt~~gYalap~p~-s~~-----~l~~~tvGT~L~S~sANaiNQ~~E~~~DsqM~RT~~ 163 (409)
T KOG1380|consen 90 PGKYARCYLELSKPRLTMLVVLTTMTGYALAPGPF-SFP-----TLLYTTVGTGLCSASANAINQIFEPPFDSQMKRTQN 163 (409)
T ss_pred CcchHHHHHHhcccceEEEEeeeccccccccccCC-Ccc-----hhHHHhhhhHHHHhhhHhhhhhccCCchhhhHhhcc
Confidence 34567899999999866655666667778875442 222 356778899999999999999999999999776 8
Q ss_pred CcccccccChHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhhHHhH
Q 015718 179 LPLASGEISMGTGIAITLASALMSLAYAVM-IRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQ 257 (402)
Q Consensus 179 RPlasG~is~~~a~~~~~~~~~~~l~la~~-l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g~l~~ 257 (402)
||+++|++++.+|+.++.+....|..+..+ .|+..-.+...-.++.+.+|+ .+||..++... ++.+.|.+++
T Consensus 164 Rplv~g~isp~hA~~fAt~~g~~G~slL~~gvNpl~a~Lga~Ni~LY~~vYT------PlKrihiinTW-vGavVGAIPP 236 (409)
T KOG1380|consen 164 RPLVRGRISPLHAVTFATLTGTAGVSLLAFGVNPLAAALGAGNIFLYAGVYT------PLKRIHIINTW-VGAVVGAIPP 236 (409)
T ss_pred cccccCccChHHHHHHHHHhccccceeeeecccHHHHHHhhcchheeecccc------chhhhhhhhhH-HHHHhccCCc
Confidence 999999999999999988888877766543 675443333233355577888 37887654332 2223355554
Q ss_pred HHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHH--HHHHhhhcChhhhhhcCCceehhhh---cHHHHHHHHHHHH
Q 015718 258 FPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVV--IAFIKDLHDVDGDKKFGIKTLSVML---GKERVFRLSVSML 331 (402)
Q Consensus 258 lg~~~~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~--~~~i~di~D~egD~~~G~~Tlpv~l---G~k~a~~l~~~l~ 331 (402)
+-.| .+..|. .+...+++..+...|.+- ..+..+++ +|..+.|.+.+++.= -++.+.+....++
T Consensus 237 LMGw----AAasg~----l~~ga~iLa~~LyaWQfPHFnaLS~~lR--~DYs~~GY~Mma~~np~l~rr~alr~s~a~~ 305 (409)
T KOG1380|consen 237 LMGW----AAASGL----LDPGAMILAGILYAWQFPHFNALSWNLR--NDYSKAGYRMMAVTNPGLCRRVALRYSLAFL 305 (409)
T ss_pred cchh----hhhccC----CCccHHHHHHHHHHhcccchhhhhhhhc--hhhhhccEEEEEeeccchhhHHHHHHHHHHh
Confidence 3223 223343 244456666677778754 23444444 456899999998853 3344445444433
No 53
>KOG4581 consensus Predicted membrane protein [Function unknown]
Probab=99.18 E-value=3e-11 Score=111.40 Aligned_cols=231 Identities=14% Similarity=0.141 Sum_probs=150.4
Q ss_pred hHHHHHHHHHHHchhhhHHHHHHHHHHHHcccc--cCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCc--cccccCC
Q 015718 101 FLKKFHALYRFMRAYACAGVIIATTSNSLLPVQ--TLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDV--EVDKVNK 176 (402)
Q Consensus 101 ~~~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~--~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~--e~Dr~nk 176 (402)
...+.+.|+-..||.....++.|...|..+|.. ...|++ ... ..+..++.+..+.++|.+|.|+|. .+|+...
T Consensus 57 ~~~k~~syllalrpws~sasl~p~~lgsalayrs~~~~d~~--l~~-~fl~a~avlavh~agnlvntyfdf~kgid~kka 133 (359)
T KOG4581|consen 57 TFMKCASYLLALRPWSFSASLTPTALGSALAYRSHGAEDFR--LAT-FFLCAFAVLAVHCAGNLVNTYFDFIKGIDHKKA 133 (359)
T ss_pred HHHHHHHHHhhhcccccccccchHhhhhHHHHhhccccchh--HHH-HHHHHhhheeeecccchhhhhhhhhhccccccc
Confidence 345678899999999999999999999999864 333432 222 334455667789999999999995 5888766
Q ss_pred CCCcccccccChHHHHHHHHHHHHHHHHHH---HHhchHHH---HHHHHHHHHHHhhccCCccccccccccchhHHHHHH
Q 015718 177 PYLPLASGEISMGTGIAITLASALMSLAYA---VMIRSPPF---IWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVS 250 (402)
Q Consensus 177 ~~RPlasG~is~~~a~~~~~~~~~~~l~la---~~l~~~~~---~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~ 250 (402)
-+|.+...-+.+.+...++..+..+|...+ ..+++..+ .+..+.++--.++|+.+. .+|...+ |.+++.+
T Consensus 134 ddrtlvd~il~~~dvv~~g~~ly~~gc~~~~~l~~lsp~klehlaliyfggls~sflytggi---gfkyial-gdliili 209 (359)
T KOG4581|consen 134 DDRTLVDHILEKDDVVRFGAFLYMAGCGCAACLAVLSPAKLEHLALIYFGGLSGSFLYTGGI---GFKYIAL-GDLIILI 209 (359)
T ss_pred cchhHHHHhcChhheehhhHHHHHhcchHHHHHHhCCHhhhhhhhhhhccCcccceeEeccc---ceEEEec-cCEEEEE
Confidence 789999888899999888888887765443 23443221 111223333456788543 5676654 3333323
Q ss_pred hhhHHhHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHH
Q 015718 251 LNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSM 330 (402)
Q Consensus 251 ~~g~l~~lg~~~~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l 330 (402)
..|.+..+-.|. .+ .|.. .+.+ .-..+...+-+-++...|+.+|.|.||++|+-|+++.+|+..+-.++..+
T Consensus 210 ~fgpiavlfaf~-~q---~g~l--~~~~--l~yaiplalnteailhsnntrd~dndr~agivtlailig~t~s~ily~~l 281 (359)
T KOG4581|consen 210 LFGPIAVLFAFA-IQ---TGHL--AIFP--LGYAIPLALNTEAILHSNNTRDADNDREAGIVTLAILIGPTASHILYAML 281 (359)
T ss_pred eechHHHHHHHH-Hh---cCce--eEEe--ehheeeeccchHHHhccCCCcccccccccCeEEEEEeecccHHHHHHHHH
Confidence 334333221121 11 2321 1111 11111223334456678999999999999999999999999888888778
Q ss_pred HHHHHHHHHHHHHhcC
Q 015718 331 LSIAYGAAVVVGASSP 346 (402)
Q Consensus 331 ~~~a~~~~i~~g~~~~ 346 (402)
+.+.|.+..+.+.-+.
T Consensus 282 lf~py~lf~i~~~~~s 297 (359)
T KOG4581|consen 282 LFAPYLLFFIFALHCS 297 (359)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8788887777665544
No 54
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=90.21 E-value=0.99 Score=44.49 Aligned_cols=44 Identities=18% Similarity=0.258 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHhhcccCccccccCCCCCcccccccChHHHHHH
Q 015718 149 ALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAI 194 (402)
Q Consensus 149 ~~l~~~l~~~a~~~~Nd~~D~e~Dr~nk~~RPlasG~is~~~a~~~ 194 (402)
.-+...+..+..+..|++.|.|+|+.|+|+-+.. ++..+.+..+
T Consensus 181 ~slp~gil~~~Il~aNNirDie~D~~~gk~TLav--rLG~~~~~~l 224 (303)
T COG1575 181 PSLPVGILIANILLANNLRDIEEDIRNGKYTLAV--RLGRKNARKL 224 (303)
T ss_pred HHHHHHHHHHHHHHhcccccchhHHhcCCcceee--eeccHhHHHH
Confidence 3344455666777899999999999998754432 3444445443
No 55
>PRK13591 ubiA prenyltransferase; Provisional
Probab=86.70 E-value=2.5 Score=41.93 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=18.6
Q ss_pred HhhcccCccccccCC-CCCcccccc
Q 015718 162 AINQLSDVEVDKVNK-PYLPLASGE 185 (402)
Q Consensus 162 ~~Nd~~D~e~Dr~nk-~~RPlasG~ 185 (402)
.+||+-|.|.|+.+. +.-|..=|+
T Consensus 197 iindirDiEGDr~~G~kTLPV~lG~ 221 (307)
T PRK13591 197 CVYDFKDVKGDTLAGIKTLPVSLGE 221 (307)
T ss_pred HHHHhhhhHhHHHcCCeeEEEEECH
Confidence 689999999999965 466665554
No 56
>PLN02922 prenyltransferase
Probab=86.36 E-value=3.2 Score=41.32 Aligned_cols=40 Identities=8% Similarity=0.140 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhhcccCccccccCCC-CCcccccccChHHHHHHH
Q 015718 153 AVLMHIYVVAINQLSDVEVDKVNKP-YLPLASGEISMGTGIAIT 195 (402)
Q Consensus 153 ~~l~~~a~~~~Nd~~D~e~Dr~nk~-~RPlasG~is~~~a~~~~ 195 (402)
..+..+.....||+-|+|+||.+++ .-|. ++.++.+..+.
T Consensus 197 ~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~l~ 237 (315)
T PLN02922 197 VGLTTTLILFCSHFHQIDGDRAVGKMSPLV---RLGTEKGSRVV 237 (315)
T ss_pred HHHHHHHHHHHccCcchhhHHHcCccceee---EEChHHHHHHH
Confidence 3455567778999999999999765 4443 34445554443
No 57
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=86.29 E-value=2.7 Score=41.82 Aligned_cols=46 Identities=20% Similarity=0.255 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhhcccCccccccCCC-CCcccccccChHHHHHHHHHHH
Q 015718 151 VPAVLMHIYVVAINQLSDVEVDKVNKP-YLPLASGEISMGTGIAITLASA 199 (402)
Q Consensus 151 l~~~l~~~a~~~~Nd~~D~e~Dr~nk~-~RPlasG~is~~~a~~~~~~~~ 199 (402)
+...+........||+-|.|+||.+.+ .-|. ++.++.+..+..++.
T Consensus 196 lp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v---~lG~~~a~~l~~~l~ 242 (317)
T PRK13387 196 LPIIFTIANIMLANNLRDLDEDIKNHRYTLVY---YIGREKGVVLFAILF 242 (317)
T ss_pred HHHHHHHHHHHHhcCCccchhHHHcCCeeeee---eEcHHhHHHHHHHHH
Confidence 444555666678999999999999654 4444 344555555433333
No 58
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=85.63 E-value=3.6 Score=40.72 Aligned_cols=38 Identities=13% Similarity=0.126 Sum_probs=25.4
Q ss_pred HHHHHHHHHhhcccCccccccCCC-CCcccccccChHHHHHH
Q 015718 154 VLMHIYVVAINQLSDVEVDKVNKP-YLPLASGEISMGTGIAI 194 (402)
Q Consensus 154 ~l~~~a~~~~Nd~~D~e~Dr~nk~-~RPlasG~is~~~a~~~ 194 (402)
.+........||+-|+|+||.+.+ .-|. ++.++.+..+
T Consensus 184 gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~l 222 (304)
T PRK07419 184 GLATSLILFCSHFHQVEDDLAAGKRSPIV---RLGTKRGAQL 222 (304)
T ss_pred HHHHHHHHHHcCCcchhhHHHcCCcceee---eechHhHHHH
Confidence 345566777999999999999654 4443 3444555444
No 59
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=85.00 E-value=4.4 Score=39.24 Aligned_cols=31 Identities=23% Similarity=0.357 Sum_probs=22.0
Q ss_pred HHHHHHHHhhcccCccccccCC-CCCcccccc
Q 015718 155 LMHIYVVAINQLSDVEVDKVNK-PYLPLASGE 185 (402)
Q Consensus 155 l~~~a~~~~Nd~~D~e~Dr~nk-~~RPlasG~ 185 (402)
+.......+||.-|+|.||.++ +.-|..-|+
T Consensus 172 l~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~ 203 (285)
T PRK12872 172 LKSFIREIVFDIKDIEGDRKSGLKTLPIVLGK 203 (285)
T ss_pred HHHHHHHHHHhcccchhHHHcCCcccchhcch
Confidence 3444555789999999999854 566665555
No 60
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=83.54 E-value=10 Score=36.97 Aligned_cols=35 Identities=20% Similarity=0.174 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhhcccCcccccc-CCCCCcccccc
Q 015718 151 VPAVLMHIYVVAINQLSDVEVDKV-NKPYLPLASGE 185 (402)
Q Consensus 151 l~~~l~~~a~~~~Nd~~D~e~Dr~-nk~~RPlasG~ 185 (402)
++.++....-..+|++.|+|.|+. +.|.-|..-|+
T Consensus 167 ~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~ 202 (281)
T TIGR01474 167 LANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGD 202 (281)
T ss_pred HHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhh
Confidence 344445555667899999999998 45677776675
No 61
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=83.43 E-value=9.6 Score=37.66 Aligned_cols=43 Identities=21% Similarity=0.183 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhhhcChhhhhhcCCceehhhhc---HHHHHHHHHHHH
Q 015718 288 SCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLG---KERVFRLSVSML 331 (402)
Q Consensus 288 ~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG---~k~a~~l~~~l~ 331 (402)
.+...+...+||+-|.|.|++.+. +=|+.-| .+.+......+.
T Consensus 64 ~l~~~~~n~~NDy~D~d~D~~~~~-~Rpi~~G~is~~~a~~~~~~l~ 109 (306)
T TIGR02056 64 PCLTGYTQTINDFYDRDIDAINEP-YRPIPSGAISEPEVITQIVLLF 109 (306)
T ss_pred HHHHHHHHHHHhHhhhhhhccCCC-CCCCCCCccCHHHHHHHHHHHH
Confidence 344455678999999999987763 3344444 444544443333
No 62
>PLN00012 chlorophyll synthetase; Provisional
Probab=83.42 E-value=5.7 Score=40.57 Aligned_cols=32 Identities=22% Similarity=0.377 Sum_probs=24.4
Q ss_pred HHHHHHHHHhhcccCcccccc-CCCCCcccccc
Q 015718 154 VLMHIYVVAINQLSDVEVDKV-NKPYLPLASGE 185 (402)
Q Consensus 154 ~l~~~a~~~~Nd~~D~e~Dr~-nk~~RPlasG~ 185 (402)
++...+....||+-|+|.|+. +++.-|..-|+
T Consensus 262 ~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~ 294 (375)
T PLN00012 262 SIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGV 294 (375)
T ss_pred HHHHHHHHHHhhhcchhhHHHcCCcccceeech
Confidence 345556778999999999997 46777776665
No 63
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=82.01 E-value=22 Score=33.30 Aligned_cols=34 Identities=12% Similarity=0.216 Sum_probs=23.6
Q ss_pred HHHHHHHHHhhhcChhhhhhc-CCceehhhhcHHH
Q 015718 289 CFCVVIAFIKDLHDVDGDKKF-GIKTLSVMLGKER 322 (402)
Q Consensus 289 ~~~~~~~~i~di~D~egD~~~-G~~Tlpv~lG~k~ 322 (402)
+.......+||+.|.|.|+.. +++.-|..-|+-+
T Consensus 34 ~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~ 68 (257)
T PF01040_consen 34 LLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRIS 68 (257)
T ss_pred HHHHHHHHhhChhhhhcCcccccccCcchhHHHHh
Confidence 444566788999999999996 3455566555443
No 64
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=81.77 E-value=5.7 Score=39.42 Aligned_cols=31 Identities=29% Similarity=0.340 Sum_probs=22.8
Q ss_pred HHHHHHHHhhcccCccccccC-CCCCcccccc
Q 015718 155 LMHIYVVAINQLSDVEVDKVN-KPYLPLASGE 185 (402)
Q Consensus 155 l~~~a~~~~Nd~~D~e~Dr~n-k~~RPlasG~ 185 (402)
+...+....||+-|+|.||.. +|.-|..-|+
T Consensus 200 l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~ 231 (314)
T PRK07566 200 LGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGE 231 (314)
T ss_pred HHHHHHHHHHHHHHhHhHHHcCCcccceeEcH
Confidence 344555789999999999985 5667765564
No 65
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=81.75 E-value=31 Score=33.72 Aligned_cols=51 Identities=16% Similarity=0.088 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhhcccCccccccC-CCCCcccccccChHHHHHHHHHHHHHHHHHH
Q 015718 153 AVLMHIYVVAINQLSDVEVDKVN-KPYLPLASGEISMGTGIAITLASALMSLAYA 206 (402)
Q Consensus 153 ~~l~~~a~~~~Nd~~D~e~Dr~n-k~~RPlasG~is~~~a~~~~~~~~~~~l~la 206 (402)
..+...+...+|++-|+|.|+.. ++.-|. ++..+.+..+..++.+++..+-
T Consensus 174 ~~l~~~~~~~in~i~Die~D~~aGi~Tlav---~lG~~~a~~~~~~~~~~a~~~~ 225 (282)
T PRK12875 174 GWLWAMGMHTFSAIPDIEPDRAAGIRTTAT---VLGERRTYAYCAACWLLAAAAF 225 (282)
T ss_pred HHHHHHHHHHHHhccCHHHHHHcCCccchh---hccHhhHHHHHHHHHHHHHHHH
Confidence 34455566789999999999974 455554 3445556555555555444443
No 66
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=81.11 E-value=8.1 Score=37.86 Aligned_cols=55 Identities=9% Similarity=0.090 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhhcccCccccccC-CCCCcccccccChHHHHHHHHHHHHHHHHHHHHhc
Q 015718 153 AVLMHIYVVAINQLSDVEVDKVN-KPYLPLASGEISMGTGIAITLASALMSLAYAVMIR 210 (402)
Q Consensus 153 ~~l~~~a~~~~Nd~~D~e~Dr~n-k~~RPlasG~is~~~a~~~~~~~~~~~l~la~~l~ 210 (402)
+.+...+...+||+-|.|.||.+ ++.-|. ++..+.+..+..++.+++.++...++
T Consensus 169 ~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv---~lG~~~a~~~~~~l~~~a~~~~~~~~ 224 (282)
T PRK13105 169 FFLWGMASHAFGAVQDVVADREAGIASIAT---VLGARRTVRLAVGLYAAAAVLMLALP 224 (282)
T ss_pred HHHHHHHHHHHHhCcchHhHHHcCCccchH---HhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566789999999999985 444443 45567777776666666655444433
No 67
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=80.20 E-value=8.9 Score=37.08 Aligned_cols=32 Identities=13% Similarity=0.034 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhhhcChhhhhhcCCceehhhhcH
Q 015718 288 SCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGK 320 (402)
Q Consensus 288 ~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~ 320 (402)
.+...+-..+||+-|.|.|++. +++=|+.-|+
T Consensus 47 ~l~~~a~~~~Nd~~D~~~D~~~-r~~Rpl~~G~ 78 (279)
T PRK12884 47 FFASGSANALNDYFDYEVDRIN-RPDRPIPSGR 78 (279)
T ss_pred HHHHHHHHHHHhhhhHhhhhcc-CCCCCCCCCC
Confidence 3344556789999999999988 6777777774
No 68
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=80.04 E-value=5.9 Score=39.75 Aligned_cols=33 Identities=27% Similarity=0.370 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhhcccCccccccC-CCCCcccccc
Q 015718 153 AVLMHIYVVAINQLSDVEVDKVN-KPYLPLASGE 185 (402)
Q Consensus 153 ~~l~~~a~~~~Nd~~D~e~Dr~n-k~~RPlasG~ 185 (402)
.++...+...+||+-|+|.|+.. ++.-|+.=|+
T Consensus 189 ~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~ 222 (331)
T PRK12392 189 NFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGA 222 (331)
T ss_pred HHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcH
Confidence 34455566679999999999985 4566665454
No 69
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=79.84 E-value=8.3 Score=37.78 Aligned_cols=43 Identities=12% Similarity=0.031 Sum_probs=28.1
Q ss_pred HHHHHHHHHhhcccCccccccCCC-CCcccccccChHHHHHHHHHHH
Q 015718 154 VLMHIYVVAINQLSDVEVDKVNKP-YLPLASGEISMGTGIAITLASA 199 (402)
Q Consensus 154 ~l~~~a~~~~Nd~~D~e~Dr~nk~-~RPlasG~is~~~a~~~~~~~~ 199 (402)
.+...+....||+-|+|+|+.+.+ .-|. ++.++.+..+...+.
T Consensus 171 gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~l~~~l~ 214 (285)
T TIGR02235 171 GLATTLILFCSHFHQVEDDLAHGKRSPVV---RLGTKLAAKIVPWVI 214 (285)
T ss_pred HHHHHHHHHhcCCccchhHHHcCCcceeh---eecHHhHHHHHHHHH
Confidence 455667778999999999999654 4443 344555555443333
No 70
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=78.98 E-value=9.9 Score=37.07 Aligned_cols=45 Identities=20% Similarity=0.180 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhhcccCccccccCC-CCCcccccccChHHHHHHHHHHHH
Q 015718 153 AVLMHIYVVAINQLSDVEVDKVNK-PYLPLASGEISMGTGIAITLASAL 200 (402)
Q Consensus 153 ~~l~~~a~~~~Nd~~D~e~Dr~nk-~~RPlasG~is~~~a~~~~~~~~~ 200 (402)
..+........||+-|.|.||.++ +.-|.- +..+.+..+...+..
T Consensus 177 ~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~---lG~~~a~~~~~~l~~ 222 (293)
T PRK06080 177 CGLLIGAVLLANNIRDIETDRENGKNTLAVR---LGDKNARRLHAALLA 222 (293)
T ss_pred HHHHHHHHHHhcCCCcchhHHHcCCeeEEee---ECcHhHHHHHHHHHH
Confidence 344555666899999999999864 444443 334444444333333
No 71
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=78.73 E-value=11 Score=36.60 Aligned_cols=34 Identities=21% Similarity=0.120 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhhcccCccccccC-CCCCcccccc
Q 015718 152 PAVLMHIYVVAINQLSDVEVDKVN-KPYLPLASGE 185 (402)
Q Consensus 152 ~~~l~~~a~~~~Nd~~D~e~Dr~n-k~~RPlasG~ 185 (402)
..++....-..+||..|.|.|+.. .|.-|..-|+
T Consensus 166 ~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~ 200 (282)
T TIGR01475 166 GVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGI 200 (282)
T ss_pred HHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhch
Confidence 334445555679999999999874 4566766663
No 72
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=78.38 E-value=9.7 Score=37.00 Aligned_cols=31 Identities=26% Similarity=0.283 Sum_probs=22.2
Q ss_pred HHHHHHHHhhcccCccccccC-CCCCcccccc
Q 015718 155 LMHIYVVAINQLSDVEVDKVN-KPYLPLASGE 185 (402)
Q Consensus 155 l~~~a~~~~Nd~~D~e~Dr~n-k~~RPlasG~ 185 (402)
+...+....||+-|.|.||.+ ++.-|..=|+
T Consensus 172 l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~ 203 (283)
T TIGR01476 172 LGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGV 203 (283)
T ss_pred HHHHHHHHHHhccchhhHHHcCCcCcceEEcH
Confidence 344556789999999999985 4566655454
No 73
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=77.17 E-value=25 Score=34.25 Aligned_cols=34 Identities=21% Similarity=0.051 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhhhcChhhhhhcCC-ceehhhhcH
Q 015718 287 ISCFCVVIAFIKDLHDVDGDKKFGI-KTLSVMLGK 320 (402)
Q Consensus 287 ~~~~~~~~~~i~di~D~egD~~~G~-~Tlpv~lG~ 320 (402)
+.+...+...+||+-|+|-|++.-+ +.=|..=|+
T Consensus 56 ~~~~~~ag~~iND~~D~eiD~~n~rt~~RPl~sG~ 90 (289)
T COG0382 56 FFLARSAGYVINDLADREIDRINPRTKNRPLPSGR 90 (289)
T ss_pred HHHHHHHhHHHHHHhhhhccCCCCCccCCCCCCCC
Confidence 3344456678999999999998877 445655554
No 74
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=75.84 E-value=13 Score=36.32 Aligned_cols=34 Identities=15% Similarity=0.016 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhhcccCccccccC-CCCCcccccc
Q 015718 152 PAVLMHIYVVAINQLSDVEVDKVN-KPYLPLASGE 185 (402)
Q Consensus 152 ~~~l~~~a~~~~Nd~~D~e~Dr~n-k~~RPlasG~ 185 (402)
..++....-...|++.|+|.|+.+ .|.-|..-|.
T Consensus 173 ~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~ 207 (285)
T PRK12847 173 GCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGN 207 (285)
T ss_pred HHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhcc
Confidence 334444455578999999999985 4566665554
No 75
>PRK13592 ubiA prenyltransferase; Provisional
Probab=75.60 E-value=25 Score=34.78 Aligned_cols=43 Identities=12% Similarity=0.172 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhhhcChhhhhhcCCceehhhh---cHHHHHHHHHHH
Q 015718 287 ISCFCVVIAFIKDLHDVDGDKKFGIKTLSVML---GKERVFRLSVSM 330 (402)
Q Consensus 287 ~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~l---G~k~a~~l~~~l 330 (402)
+++.+.+-..+||+.|+|-|+. ++..=|+-= ..+.++.....+
T Consensus 55 vf~~~~~gniiNDy~D~EIDrI-N~P~RPLPsG~VS~~~A~~~si~L 100 (299)
T PRK13592 55 VFGFWMILRIADDFKDYETDRR-LFPHRALPSGRVKKKDLAIALSFI 100 (299)
T ss_pred HHHHHHHhHHHHHHhhHHHhhh-cCCCCCCCcCCCCHHHHHHHHHHH
Confidence 3344455678999999999965 445555533 345555544333
No 76
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=75.46 E-value=9.4 Score=37.50 Aligned_cols=32 Identities=19% Similarity=0.214 Sum_probs=22.1
Q ss_pred HHHHHHHHHhhcccCcccccc-CCCCCcccccc
Q 015718 154 VLMHIYVVAINQLSDVEVDKV-NKPYLPLASGE 185 (402)
Q Consensus 154 ~l~~~a~~~~Nd~~D~e~Dr~-nk~~RPlasG~ 185 (402)
++....-..+|++.|+|.|+. ..|.-|..-|+
T Consensus 172 ~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~ 204 (291)
T PRK12886 172 LFWVAGFDILYALQDLEFDRKEGLHSIPAKLGV 204 (291)
T ss_pred HHHHHHHHHHHHhccHHhHHHcCCcCcchhcCc
Confidence 333444446788899999986 55777776665
No 77
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=74.85 E-value=12 Score=36.56 Aligned_cols=40 Identities=20% Similarity=0.189 Sum_probs=25.9
Q ss_pred HHHHHHHHHhhcccCccccccCCC-CCcccccccChHHHHHHHH
Q 015718 154 VLMHIYVVAINQLSDVEVDKVNKP-YLPLASGEISMGTGIAITL 196 (402)
Q Consensus 154 ~l~~~a~~~~Nd~~D~e~Dr~nk~-~RPlasG~is~~~a~~~~~ 196 (402)
.+........|+.-|.|+|+.+.+ .-|. ++..+.+..+..
T Consensus 174 g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v---~lG~~~a~~l~~ 214 (284)
T TIGR00751 174 GLLACAVLNINNLRDIPTDARAGKNTLAV---RLGDARTRMYHQ 214 (284)
T ss_pred HHHHHHHHHHcCcccchhHHHcCCEeehh---hcchHhHHHHHH
Confidence 344466667999999999998654 4443 344555554433
No 78
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=73.14 E-value=16 Score=36.00 Aligned_cols=37 Identities=14% Similarity=0.349 Sum_probs=23.0
Q ss_pred HHHHHHHhhhcChhhhhhcCC-ceehhh---hcHHHHHHHH
Q 015718 291 CVVIAFIKDLHDVDGDKKFGI-KTLSVM---LGKERVFRLS 327 (402)
Q Consensus 291 ~~~~~~i~di~D~egD~~~G~-~Tlpv~---lG~k~a~~l~ 327 (402)
..+...+||+-|.|-|+++-+ +.=|.. +..+.+....
T Consensus 59 ~sa~y~iND~~D~e~Dr~~prk~~RPlasG~is~~~A~~~~ 99 (295)
T PRK12324 59 SSAVYLVNDIRDVEADRLHPTKRNRPIASGVVSVSLAYILA 99 (295)
T ss_pred HHHHHHHHhHHHHHhhccCCCCCCCCCCCCccCHHHHHHHH
Confidence 345678999999999998622 233333 4444444443
No 79
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=72.88 E-value=38 Score=33.26 Aligned_cols=32 Identities=31% Similarity=0.189 Sum_probs=23.8
Q ss_pred HHHHHHHHHhhhcChhhhhhcCC-ceehhhhcH
Q 015718 289 CFCVVIAFIKDLHDVDGDKKFGI-KTLSVMLGK 320 (402)
Q Consensus 289 ~~~~~~~~i~di~D~egD~~~G~-~Tlpv~lG~ 320 (402)
+...+-..+||+.|+|-|++..+ ++=|+.=|+
T Consensus 56 ~~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~ 88 (289)
T PLN02809 56 LLRGAGCTINDLLDRDIDKKVERTKLRPIASGA 88 (289)
T ss_pred HHHHHHHHHHhhHHhccccCCCCCCCCCCCCCC
Confidence 33455678999999999998765 466776674
No 80
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=70.55 E-value=18 Score=35.42 Aligned_cols=34 Identities=24% Similarity=0.060 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhhcccCccccccC-CCCCcccccc
Q 015718 152 PAVLMHIYVVAINQLSDVEVDKVN-KPYLPLASGE 185 (402)
Q Consensus 152 ~~~l~~~a~~~~Nd~~D~e~Dr~n-k~~RPlasG~ 185 (402)
...+....-..+|++.|+|.|+.. .|.-|.--|.
T Consensus 167 ~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~ 201 (284)
T PRK12888 167 AVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGV 201 (284)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCc
Confidence 334445556689999999999974 4666665554
No 81
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=70.35 E-value=22 Score=35.12 Aligned_cols=34 Identities=15% Similarity=0.156 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhhcccCccccccC-CCCCcccccc
Q 015718 152 PAVLMHIYVVAINQLSDVEVDKVN-KPYLPLASGE 185 (402)
Q Consensus 152 ~~~l~~~a~~~~Nd~~D~e~Dr~n-k~~RPlasG~ 185 (402)
..++....-...||+.|+|.|+.+ +|.-|+.-|+
T Consensus 183 ~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~ 217 (297)
T PRK12871 183 FFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGM 217 (297)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeech
Confidence 334445556679999999999984 5677776665
No 82
>PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed
Probab=70.31 E-value=62 Score=33.34 Aligned_cols=20 Identities=20% Similarity=0.286 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHhhcccCccc
Q 015718 152 PAVLMHIYVVAINQLSDVEV 171 (402)
Q Consensus 152 ~~~l~~~a~~~~Nd~~D~e~ 171 (402)
+..++..--.++|++++.++
T Consensus 113 a~~~~~~ie~a~N~Iw~v~~ 132 (412)
T PRK04214 113 LLILLHTIEQTFNRIWRVNS 132 (412)
T ss_pred HHHHHHHHHHHHHHHhCCCC
Confidence 33455666678999998754
No 83
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=69.92 E-value=17 Score=35.15 Aligned_cols=29 Identities=24% Similarity=0.440 Sum_probs=21.1
Q ss_pred HHHHHHhhcccCccccccC-CCCCcccccc
Q 015718 157 HIYVVAINQLSDVEVDKVN-KPYLPLASGE 185 (402)
Q Consensus 157 ~~a~~~~Nd~~D~e~Dr~n-k~~RPlasG~ 185 (402)
..+-...||.-|.|.|+.. .|.-|..-|+
T Consensus 167 ~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~ 196 (277)
T PRK12883 167 NVAREIMKDIEDIEGDKAKGAKTLPIIIGK 196 (277)
T ss_pred HHHHHHHhhhhhhccHHHcCCcCcChHhcH
Confidence 3345567999999999984 5667765554
No 84
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=68.79 E-value=29 Score=33.71 Aligned_cols=36 Identities=11% Similarity=0.060 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHhhcccCccccccC-CCCCcccccc
Q 015718 150 LVPAVLMHIYVVAINQLSDVEVDKVN-KPYLPLASGE 185 (402)
Q Consensus 150 ~l~~~l~~~a~~~~Nd~~D~e~Dr~n-k~~RPlasG~ 185 (402)
++..++-...-...|.+.|+|.|+.. .|.-|..-|.
T Consensus 168 ~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~ 204 (282)
T PRK12848 168 FLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGR 204 (282)
T ss_pred HHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhcc
Confidence 33444445555568999999999984 4667766665
No 85
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=68.71 E-value=43 Score=32.77 Aligned_cols=31 Identities=16% Similarity=0.090 Sum_probs=20.9
Q ss_pred HHHHHHHHhhhcChhhhhhcCCc-eehhhhcH
Q 015718 290 FCVVIAFIKDLHDVDGDKKFGIK-TLSVMLGK 320 (402)
Q Consensus 290 ~~~~~~~i~di~D~egD~~~G~~-Tlpv~lG~ 320 (402)
...+-..+||+.|.|-|++..+. .=|..=|+
T Consensus 58 ~~~a~~~~Nd~~D~~iD~~~~Rt~~RPL~sG~ 89 (290)
T PRK12870 58 TSAAGCVVNDLWDRDIDPQVERTRFRPLASRR 89 (290)
T ss_pred HHHHHHHHHhHHHhccCCCCCcccCCCCCCCC
Confidence 34556789999999999865543 34544443
No 86
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=68.65 E-value=26 Score=33.97 Aligned_cols=42 Identities=19% Similarity=0.205 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhhhcChhhhhhcCCceehhhhc---HHHHHHHHHH
Q 015718 287 ISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLG---KERVFRLSVS 329 (402)
Q Consensus 287 ~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG---~k~a~~l~~~ 329 (402)
..+...+-..+||+-|+|-|++.. ++=|+.=| .+.+......
T Consensus 46 ~~l~~~~~~~iNd~~D~~iD~~~~-~~Rpl~sG~is~~~a~~~~~~ 90 (279)
T PRK09573 46 VFLVCAGGNVINDIYDIEIDKINK-PERPIPSGRISLKEAKIFSIT 90 (279)
T ss_pred HHHHHHHHHHHHhhcccccccccC-CCCCcCCCccCHHHHHHHHHH
Confidence 334445667899999999999764 44455444 4555544433
No 87
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=67.35 E-value=19 Score=35.61 Aligned_cols=33 Identities=18% Similarity=0.188 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhhcccCccccccC-CCCCccccc
Q 015718 152 PAVLMHIYVVAINQLSDVEVDKVN-KPYLPLASG 184 (402)
Q Consensus 152 ~~~l~~~a~~~~Nd~~D~e~Dr~n-k~~RPlasG 184 (402)
+.++...+-..+|+.-|+|.|+.. .+.-|+-=|
T Consensus 185 ~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G 218 (300)
T PRK13106 185 GTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG 218 (300)
T ss_pred HHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh
Confidence 344444455579999999999874 456666555
No 88
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=66.69 E-value=31 Score=34.19 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=18.0
Q ss_pred HHhhhcChhhhhhcCCceehhhhcH
Q 015718 296 FIKDLHDVDGDKKFGIKTLSVMLGK 320 (402)
Q Consensus 296 ~i~di~D~egD~~~G~~Tlpv~lG~ 320 (402)
.+||+.|+|-|+. ++++-|+.=|+
T Consensus 71 ~iNd~~D~~iD~i-nkp~rPiasG~ 94 (308)
T PRK12887 71 GLNQLTDIEIDRI-NKPHLPLAAGE 94 (308)
T ss_pred HHhhhhhHHHHhc-CCCCCCcCCcc
Confidence 3999999999985 45777764443
No 89
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=65.20 E-value=28 Score=33.63 Aligned_cols=38 Identities=16% Similarity=0.039 Sum_probs=25.0
Q ss_pred HHHHHHHHHhhhcChhhhhhcCCceehhhhc---HHHHHHHH
Q 015718 289 CFCVVIAFIKDLHDVDGDKKFGIKTLSVMLG---KERVFRLS 327 (402)
Q Consensus 289 ~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG---~k~a~~l~ 327 (402)
+...+-..+||+-|.|-|+... ++=|+.-| ++.+....
T Consensus 49 l~~~~~~~~Nd~~D~~iD~~~~-~~Rpl~~G~is~~~a~~~~ 89 (276)
T PRK12882 49 LATGAGNAINDYFDREIDRINR-PDRPIPSGAVSPRGALAFS 89 (276)
T ss_pred HHHHHHHHHHHHhhhccccccC-CCCCcCCCCcCHHHHHHHH
Confidence 3345567899999999999644 55566655 44444443
No 90
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=64.15 E-value=41 Score=33.15 Aligned_cols=32 Identities=25% Similarity=0.194 Sum_probs=23.3
Q ss_pred HHHHHHHHHhhhcChhhhhhcCC-ceehhhhcH
Q 015718 289 CFCVVIAFIKDLHDVDGDKKFGI-KTLSVMLGK 320 (402)
Q Consensus 289 ~~~~~~~~i~di~D~egD~~~G~-~Tlpv~lG~ 320 (402)
+...+-..+||+-|+|-|++.-+ +.=|+.=|+
T Consensus 55 l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~sG~ 87 (294)
T PRK12873 55 AVSGAGCIANDLWDRRIDRKVERTKNRPLARGK 87 (294)
T ss_pred HHHHHHHHHHHHHHHhhccCCCcCCCCCCCCCC
Confidence 33345678999999999998877 455665554
No 91
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=63.42 E-value=57 Score=31.65 Aligned_cols=41 Identities=10% Similarity=-0.008 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhhhcChhhhhhcCC-ceehh---hhcHHHHHHHH
Q 015718 287 ISCFCVVIAFIKDLHDVDGDKKFGI-KTLSV---MLGKERVFRLS 327 (402)
Q Consensus 287 ~~~~~~~~~~i~di~D~egD~~~G~-~Tlpv---~lG~k~a~~l~ 327 (402)
..+...+-..+||+.|.|-|++..+ +.=|. ++..+.+....
T Consensus 45 ~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~ 89 (279)
T PRK12869 45 GTLASGGSAAFNHGIERDIDKVMSRTSKRPTPVGLVNRKEALAVG 89 (279)
T ss_pred HHHHHHHHHHHhchHhcCCCCCCCCCCCCCcCCCCcCHHHHHHHH
Confidence 3334456688999999999998654 22333 33445444443
No 92
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=62.33 E-value=21 Score=35.01 Aligned_cols=34 Identities=24% Similarity=0.226 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhhcccCcccccc-CCCCCcccccc
Q 015718 152 PAVLMHIYVVAINQLSDVEVDKV-NKPYLPLASGE 185 (402)
Q Consensus 152 ~~~l~~~a~~~~Nd~~D~e~Dr~-nk~~RPlasG~ 185 (402)
..++-..+-..+|++.|+|.|+. +.|.-|..-|+
T Consensus 175 ~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~ 209 (291)
T PRK12874 175 GVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGE 209 (291)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhh
Confidence 33445555567999999999987 45677766665
No 93
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=60.11 E-value=90 Score=30.98 Aligned_cols=32 Identities=19% Similarity=0.065 Sum_probs=21.8
Q ss_pred HHHHHHHHHhhcccCcccccc-CCCCCcccccc
Q 015718 154 VLMHIYVVAINQLSDVEVDKV-NKPYLPLASGE 185 (402)
Q Consensus 154 ~l~~~a~~~~Nd~~D~e~Dr~-nk~~RPlasG~ 185 (402)
++....-..++++.|+|.|+. .+|.-|..-|.
T Consensus 202 ~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~ 234 (314)
T PRK12878 202 IAWTIGYDTIYAHQDKEDDALIGVKSTARLFGD 234 (314)
T ss_pred HHHHHHHHHHHHhhhHhhHHHcCCcccchHhch
Confidence 333444445678899999987 55677776665
No 94
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=58.39 E-value=49 Score=32.45 Aligned_cols=34 Identities=24% Similarity=0.240 Sum_probs=23.1
Q ss_pred HHHHHHHHhhcccCccccccCCC-CCcccccccChHHH
Q 015718 155 LMHIYVVAINQLSDVEVDKVNKP-YLPLASGEISMGTG 191 (402)
Q Consensus 155 l~~~a~~~~Nd~~D~e~Dr~nk~-~RPlasG~is~~~a 191 (402)
+........|+.-|+|.||.+.+ .-|. ++..+.+
T Consensus 182 l~~~~il~~n~~~D~e~D~~~G~~Tlav---~lG~~~a 216 (296)
T PRK05951 182 LLMALVLLSNNLRDIEDDERKGIPTLAV---IFGRRGA 216 (296)
T ss_pred HHHHHHHHHCCCccchhHHHCCCeeeee---eEcHhhH
Confidence 34456677999999999998654 4343 4445555
No 95
>COG1295 Rbn Ribonuclease BN family enzyme [Replication, recombination, and repair]
Probab=55.61 E-value=2e+02 Score=28.31 Aligned_cols=28 Identities=18% Similarity=0.037 Sum_probs=15.9
Q ss_pred HHHHHhhccCCcccc-ccccc-cchhHHHHH
Q 015718 221 WIFVGTAYSVQLPLL-RWKGN-SFLAAFCMV 249 (402)
Q Consensus 221 ~~~l~~~Ys~~lpp~-rlKr~-~~l~~l~~~ 249 (402)
++.+.++|.. +|.. +.|.+ ...|.+..+
T Consensus 201 ~~~f~~ly~~-lP~~~~~~~~~~~~Ga~~aa 230 (303)
T COG1295 201 TLGFFLLYRF-LPNVRVLKWRDVLPGALLAA 230 (303)
T ss_pred HHHHHHHHHH-cCCccccchHHhhhhHHHHH
Confidence 3566788886 7776 34444 344554443
No 96
>PRK13595 ubiA prenyltransferase; Provisional
Probab=54.74 E-value=86 Score=30.95 Aligned_cols=34 Identities=26% Similarity=0.146 Sum_probs=21.4
Q ss_pred HHHHHHhhhcChhhhhhcCCceehh---hhcHHHHHHH
Q 015718 292 VVIAFIKDLHDVDGDKKFGIKTLSV---MLGKERVFRL 326 (402)
Q Consensus 292 ~~~~~i~di~D~egD~~~G~~Tlpv---~lG~k~a~~l 326 (402)
.....+||+-|.|-|++.-++ =++ ++..+.++.+
T Consensus 61 ~~~~giND~fD~eiDa~Npr~-~~i~~G~is~~~~~~~ 97 (292)
T PRK13595 61 LLIYGLNDLADRETDAASPRK-GGWQGARLSPGEVRPL 97 (292)
T ss_pred HHHHHHHhhhhhhhhccCCCC-CCCCcCccCHHHHHHH
Confidence 345678999999999865543 333 3444444443
No 97
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=52.85 E-value=1.4e+02 Score=29.54 Aligned_cols=29 Identities=17% Similarity=0.023 Sum_probs=21.3
Q ss_pred HHHHHHhhhcChhhhhhcCC-ceehhhhcH
Q 015718 292 VVIAFIKDLHDVDGDKKFGI-KTLSVMLGK 320 (402)
Q Consensus 292 ~~~~~i~di~D~egD~~~G~-~Tlpv~lG~ 320 (402)
.+-..+||+-|+|-|++.-+ ++=|..-|+
T Consensus 61 sag~~~Nd~~DrdiD~~~~RT~~RPLpsG~ 90 (300)
T PRK12876 61 TVGIIVNQIIDCAIDKKNPRTSSRVLPAKL 90 (300)
T ss_pred HHHHHHHhHHHhcccCCCCCCCCCCCCCCC
Confidence 45578999999999998875 344554454
No 98
>PRK08238 hypothetical protein; Validated
Probab=49.85 E-value=61 Score=34.24 Aligned_cols=41 Identities=12% Similarity=0.125 Sum_probs=25.0
Q ss_pred HHHHHHHHHhhhcChhhhhhcCC-ceehhhhc---HHHHHHHHHH
Q 015718 289 CFCVVIAFIKDLHDVDGDKKFGI-KTLSVMLG---KERVFRLSVS 329 (402)
Q Consensus 289 ~~~~~~~~i~di~D~egD~~~G~-~Tlpv~lG---~k~a~~l~~~ 329 (402)
+...+...+||+-|.|.|+++-+ +.=|+.=| .+.+..+..+
T Consensus 237 l~~sa~~~~ND~~D~e~Dr~~~rk~~RPlasG~is~~~A~~~~~~ 281 (479)
T PRK08238 237 LCASAVYILNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPL 281 (479)
T ss_pred HHHHHHHHHHhhHHhhhhccCCCCCCCCCCCCCCCHHHHHHHHHH
Confidence 33345678999999999999743 33354444 4444444333
No 99
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=49.65 E-value=1.6e+02 Score=29.05 Aligned_cols=41 Identities=15% Similarity=0.124 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhhhcChhhhhhcCC-ceehhhhc---HHHHHHHH
Q 015718 287 ISCFCVVIAFIKDLHDVDGDKKFGI-KTLSVMLG---KERVFRLS 327 (402)
Q Consensus 287 ~~~~~~~~~~i~di~D~egD~~~G~-~Tlpv~lG---~k~a~~l~ 327 (402)
..+...+-..+||+.|.|-|++..+ +.=|+.=| .+.+..+.
T Consensus 56 ~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~RPlpsG~is~~~A~~~~ 100 (306)
T PRK13362 56 LSLVVASGCALNNCIDRDIDAKMQRTRNRVTVTGEISLGEALGFG 100 (306)
T ss_pred HHHHHHHHHHHhChHHhCcCCCCCCCCCCCCCCCCCCHHHHHHHH
Confidence 3344456678999999999987654 23344444 44454444
No 100
>PLN02878 homogentisate phytyltransferase
Probab=49.12 E-value=68 Score=31.46 Aligned_cols=41 Identities=12% Similarity=0.237 Sum_probs=25.7
Q ss_pred HHHHHHHHHhhcccCccccccCC-CCCcccccccChHHHHHHHHH
Q 015718 154 VLMHIYVVAINQLSDVEVDKVNK-PYLPLASGEISMGTGIAITLA 197 (402)
Q Consensus 154 ~l~~~a~~~~Nd~~D~e~Dr~nk-~~RPlasG~is~~~a~~~~~~ 197 (402)
.++......+||+-|.|-||..+ +.-|+-=| .+.+..++..
T Consensus 166 ~~f~~~i~i~KDi~DieGD~~~Gi~Tlpv~lG---~~~~~~i~~~ 207 (280)
T PLN02878 166 CFFSVVIALFKDIPDVEGDRIFGIRSFSVRLG---QKRVFWLCVN 207 (280)
T ss_pred HHHHHHHHHHhhCcCchhHHHCCCceechhhC---hHHHHHHHHH
Confidence 34444556899999999999854 45565434 3444444333
No 101
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=48.24 E-value=82 Score=30.45 Aligned_cols=39 Identities=15% Similarity=0.133 Sum_probs=24.3
Q ss_pred HHHHHHHHHhhhcChhhhhhcCC-ceehhhhc---HHHHHHHH
Q 015718 289 CFCVVIAFIKDLHDVDGDKKFGI-KTLSVMLG---KERVFRLS 327 (402)
Q Consensus 289 ~~~~~~~~i~di~D~egD~~~G~-~Tlpv~lG---~k~a~~l~ 327 (402)
+...+-..+||+-|.|-|++..+ ++=|+.=| .+.+....
T Consensus 46 l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~ 88 (280)
T TIGR01473 46 LAAASANAFNMYIDRDIDKKMKRTRNRPLVTGRISPREALAFG 88 (280)
T ss_pred HHHHHHHHHHhhcccCcCCCCCCCCCCCCCCCCcCHHHHHHHH
Confidence 33455678999999999997543 33344334 45554444
No 102
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=47.72 E-value=1.4e+02 Score=29.28 Aligned_cols=20 Identities=10% Similarity=-0.092 Sum_probs=16.4
Q ss_pred HHHHHHHhhhcChhhhhhcC
Q 015718 291 CVVIAFIKDLHDVDGDKKFG 310 (402)
Q Consensus 291 ~~~~~~i~di~D~egD~~~G 310 (402)
..+-..+||+-|+|-|++.-
T Consensus 50 rsag~~~Ndi~Dr~iD~~~~ 69 (286)
T PRK12895 50 RTSAMSINRIEGLRYDMINP 69 (286)
T ss_pred HHHHHHHHhHHHhcccCCCC
Confidence 34567899999999998883
No 103
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=44.16 E-value=2.2e+02 Score=27.82 Aligned_cols=38 Identities=13% Similarity=0.131 Sum_probs=23.7
Q ss_pred HHHHHHHHhhhcChhhhhhcCC-ceehh---hhcHHHHHHHH
Q 015718 290 FCVVIAFIKDLHDVDGDKKFGI-KTLSV---MLGKERVFRLS 327 (402)
Q Consensus 290 ~~~~~~~i~di~D~egD~~~G~-~Tlpv---~lG~k~a~~l~ 327 (402)
...+-..+||+.|.|-|++..+ ++=|+ ++.++.+....
T Consensus 56 ~~aa~~~iNd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~ 97 (296)
T PRK04375 56 VAGAAGALNNYIDRDIDAKMERTKNRPLVTGRISPREALIFG 97 (296)
T ss_pred HHHHHHHHHhHHhhccCCCCCccCCCCCCCCCcCHHHHHHHH
Confidence 3455678999999999998543 23343 33445554443
No 104
>PRK11383 hypothetical protein; Provisional
Probab=44.11 E-value=2.3e+02 Score=25.00 Aligned_cols=15 Identities=20% Similarity=0.266 Sum_probs=10.5
Q ss_pred HHHHHHhhhcChhhh
Q 015718 292 VVIAFIKDLHDVDGD 306 (402)
Q Consensus 292 ~~~~~i~di~D~egD 306 (402)
.++.+-|+.||...+
T Consensus 117 gai~vQKn~RD~~~~ 131 (145)
T PRK11383 117 GAVAVQKNIRDAGIN 131 (145)
T ss_pred HHHHHHhhhhhhhhc
Confidence 345677999998544
No 105
>PLN02776 prenyltransferase
Probab=40.42 E-value=1.5e+02 Score=30.01 Aligned_cols=41 Identities=10% Similarity=0.085 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhhhcChhhhhhcCC-ceehhhhc---HHHHHHHH
Q 015718 287 ISCFCVVIAFIKDLHDVDGDKKFGI-KTLSVMLG---KERVFRLS 327 (402)
Q Consensus 287 ~~~~~~~~~~i~di~D~egD~~~G~-~Tlpv~lG---~k~a~~l~ 327 (402)
..+...+-..+||+-|.|-|+++.+ +.=|+.-| .+.+....
T Consensus 38 ~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~~~A~~~~ 82 (341)
T PLN02776 38 TMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISVPHAVAWA 82 (341)
T ss_pred HHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCHHHHHHHH
Confidence 3333455678999999999988655 33344434 44444443
No 106
>PF09928 DUF2160: Predicted small integral membrane protein (DUF2160); InterPro: IPR018678 The members of this family of hypothetical prokaryotic proteins have no known function. It is thought that they are transmembrane proteins, but their function has not been inferred yet.
Probab=38.00 E-value=2.1e+02 Score=23.01 Aligned_cols=53 Identities=17% Similarity=0.197 Sum_probs=40.2
Q ss_pred HHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHHHHHHHHHHHHHhcCcch
Q 015718 292 VVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLA 349 (402)
Q Consensus 292 ~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~~a~~~~i~~g~~~~~~~ 349 (402)
++.+++-+++.- +..+.|.--++..-|+| +...++..+|.-++..|...+..|
T Consensus 19 L~~mtvwe~~~P-~~~R~GfLpi~TTRGDR----LFIsLL~sA~I~L~Wlgl~~~~lW 71 (88)
T PF09928_consen 19 LAGMTVWEIRSP-TVERKGFLPIETTRGDR----LFISLLGSAFIHLAWLGLVGPSLW 71 (88)
T ss_pred HHHHHHHHhcCC-CCCcCceecccCCCcch----hHHHHHHHHHHHHHHHHhcCccHH
Confidence 344566677776 78889998888899986 224667788888888888877767
No 107
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=36.45 E-value=2.2e+02 Score=22.72 Aligned_cols=38 Identities=26% Similarity=0.253 Sum_probs=29.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccC
Q 015718 138 LTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVN 175 (402)
Q Consensus 138 ~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~n 175 (402)
.+...+.++....++..+...++...|..+|...|++.
T Consensus 52 ~t~g~~~g~~~~~~~~~l~~~Yv~~An~~~D~l~~~i~ 89 (91)
T PF04341_consen 52 LTLGIVLGLGQIVFAWVLTWLYVRRANREFDPLARAIR 89 (91)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHH
Confidence 45556666777777888888888889999998887753
No 108
>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]
Probab=27.47 E-value=99 Score=30.75 Aligned_cols=41 Identities=24% Similarity=0.337 Sum_probs=30.9
Q ss_pred HhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHHHHHHHH
Q 015718 297 IKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAA 338 (402)
Q Consensus 297 i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~~a~~~~ 338 (402)
-.|+.| ++|.++|+.|....+|+..+....-.++.-++-.+
T Consensus 85 HDDvmD-~s~~RRG~pt~~~~~g~~~AIlaGD~L~~~Af~~l 125 (322)
T COG0142 85 HDDLMD-DDDLRRGKPTVHAKFGEATAILAGDALLAAAFELL 125 (322)
T ss_pred Hhhccc-CCCccCCCCCchhHhccHHHHHHHHHHHHHHHHHH
Confidence 347776 56899999999999999988777666655554433
No 109
>PRK01637 hypothetical protein; Reviewed
Probab=27.09 E-value=5.8e+02 Score=24.64 Aligned_cols=22 Identities=14% Similarity=0.146 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHhhcccCccccc
Q 015718 152 PAVLMHIYVVAINQLSDVEVDK 173 (402)
Q Consensus 152 ~~~l~~~a~~~~Nd~~D~e~Dr 173 (402)
+...++.-...+|+.++.+++|
T Consensus 105 a~~~~~~l~~a~N~i~~~~~~R 126 (286)
T PRK01637 105 ALMLISSIDKALNTIWRSKRKR 126 (286)
T ss_pred HHHHHHHHHHHHHHHhCCCCCC
Confidence 4445566667899999876553
No 110
>PRK10581 geranyltranstransferase; Provisional
Probab=23.75 E-value=71 Score=31.48 Aligned_cols=39 Identities=26% Similarity=0.412 Sum_probs=29.7
Q ss_pred HHHHHHHHhhhcChhh-----------hhhcCCceehhhhcHHHHHHHHH
Q 015718 290 FCVVIAFIKDLHDVDG-----------DKKFGIKTLSVMLGKERVFRLSV 328 (402)
Q Consensus 290 ~~~~~~~i~di~D~eg-----------D~~~G~~Tlpv~lG~k~a~~l~~ 328 (402)
+.+++.+..|+.|+.+ |.+.|+.|+|+.+|.+.+.....
T Consensus 215 lG~aFQI~DDilD~~g~~~~~GK~~g~Dl~~gk~T~p~l~~~e~a~~~a~ 264 (299)
T PRK10581 215 IGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKAR 264 (299)
T ss_pred HHHHHHHHHHHccccCChHHHCCCcchhhhcCCCCHHHHHHHHHHHHHHH
Confidence 3456677888888754 56789999999999887776543
No 111
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=22.64 E-value=3.3e+02 Score=23.23 Aligned_cols=40 Identities=13% Similarity=0.071 Sum_probs=22.0
Q ss_pred ccccCCCCCcccccccChHHHHHHHHHHHHHHH----HHHHHhchH
Q 015718 171 VDKVNKPYLPLASGEISMGTGIAITLASALMSL----AYAVMIRSP 212 (402)
Q Consensus 171 ~Dr~nk~~RPlasG~is~~~a~~~~~~~~~~~l----~la~~l~~~ 212 (402)
-||.|+. |..=+-+|..|....+.+..++++ .+++..+++
T Consensus 8 p~RLN~e--PvV~rGlT~~El~~~a~~~~~~g~~~gl~la~~~g~~ 51 (121)
T PF11990_consen 8 PDRLNRE--PVVFRGLTADELGLAAGVGFVAGLVVGLPLALLTGWW 51 (121)
T ss_pred hhhhcCC--CCeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677643 445556677777766555444444 444444544
No 112
>PF10777 YlaC: Inner membrane protein YlaC; InterPro: IPR019713 The extracytoplasmic function (ECF) sigma factors are small regulatory proteins that are quite divergent in sequence relative to most other sigma factors. YlaC, regulated by YlaA, is important in oxidative stress resistance. It contributes to hydrogen peroxide resistance in Bacillus subtilis [].
Probab=22.12 E-value=1.1e+02 Score=27.26 Aligned_cols=25 Identities=24% Similarity=0.225 Sum_probs=18.2
Q ss_pred HHHhhhcChhhhhhcCCceehhhhc
Q 015718 295 AFIKDLHDVDGDKKFGIKTLSVMLG 319 (402)
Q Consensus 295 ~~i~di~D~egD~~~G~~Tlpv~lG 319 (402)
+-+-+-+++.++.|.|++.+-..-|
T Consensus 116 ~~iL~~p~V~~~~K~~i~~i~~~Kg 140 (155)
T PF10777_consen 116 DKILQSPQVPDEIKQGIQRIISTKG 140 (155)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 4455788999999988877655544
No 113
>PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms. For example in eukaryotes the isoprenoid biosynthetic pathway is responsible for the synthesis of a variety of end products including cholesterol, dolichol, ubiquinone or coenzyme Q. In bacteria this pathway leads to the synthesis of isopentenyl tRNA, isoprenoid quinones, and sugar carrier lipids. Among the enzymes that participate in that pathway, are a number of polyprenyl synthetase enzymes which catalyze a 1'4-condensation between 5 carbon isoprene units. It has been shown [, , , , ] that all the above enzymes share some regions of sequence similarity. Two of these regions are rich in aspartic-acid residues and could be involved in the catalytic mechanism and/or the binding of the substrates.; GO: 0008299 isoprenoid biosynthetic process; PDB: 3AQC_B 3AQB_D 3Q1O_C 3LLW_B 3EFQ_A 3EGT_A 3DYG_A 2P1C_A 2OGD_A 2EWG_B ....
Probab=20.84 E-value=3.5e+02 Score=25.67 Aligned_cols=47 Identities=17% Similarity=0.194 Sum_probs=33.8
Q ss_pred HHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHHHHHHHHH
Q 015718 292 VVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAV 339 (402)
Q Consensus 292 ~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~~a~~~~i 339 (402)
.+..+..|+.|- ++.++|..|.-.++|.+.+....-.++..++-.+.
T Consensus 47 ~asLIhDDI~D~-s~~RRG~pt~~~~~G~~~Ail~gd~ll~~a~~~l~ 93 (260)
T PF00348_consen 47 AASLIHDDIIDN-SDLRRGKPTVHKKFGNAIAILAGDYLLALAFELLA 93 (260)
T ss_dssp HHHHHHHHHHTT-CSEETTEECHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhcc-cccCCCCccccccccccchhhhchHHHHHHHHHHH
Confidence 445566788884 47889999999999999887776555554544333
No 114
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=20.69 E-value=3.1e+02 Score=21.25 Aligned_cols=45 Identities=20% Similarity=0.110 Sum_probs=25.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchHHHHHHHHHHHHHH
Q 015718 319 GKERVFRLSVSMLSIAYGAAVVVGASSP-FLANKLITIIGHGILAS 363 (402)
Q Consensus 319 G~k~a~~l~~~l~~~a~~~~i~~g~~~~-~~~~~~~~~~g~~i~a~ 363 (402)
|+|.+-++...++.+..++..+.|+... +......++.|.++.+.
T Consensus 5 gQ~~ae~l~~~il~~~~iisfi~Gy~~q~~~~~~~~~~~g~~~~~l 50 (76)
T PF06645_consen 5 GQRLAEKLMQYILIISAIISFIVGYITQSFSYTFYIYGAGVVLTLL 50 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6677777766666666666667776553 33322344455544443
Done!