Query 015718
Match_columns 402
No_of_seqs 386 out of 2259
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 17:28:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015718.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015718hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kra_B Geranyl diphosphate syn 37.7 94 0.0032 28.8 7.9 44 293-336 75-118 (274)
2 3lsn_A Geranyltranstransferase 27.8 37 0.0013 32.1 3.3 40 291-330 216-266 (304)
3 3ts7_A Geranyltranstransferase 27.2 42 0.0014 32.1 3.6 40 291-330 222-272 (324)
4 3lom_A Geranyltranstransferase 26.3 45 0.0016 31.7 3.6 39 291-329 223-272 (313)
5 3p8r_A Geranyltranstransferase 24.2 44 0.0015 31.6 3.1 38 292-329 223-271 (302)
6 4f62_A Geranyltranstransferase 24.1 54 0.0019 31.2 3.7 40 291-330 215-265 (317)
7 3p8l_A Geranyltranstransferase 22.9 48 0.0017 31.3 3.1 40 291-330 219-269 (302)
8 3m0g_A Farnesyl diphosphate sy 22.8 50 0.0017 31.1 3.2 40 290-329 208-258 (297)
9 2h8o_A Geranyltranstransferase 22.3 40 0.0014 32.4 2.4 38 291-328 255-303 (335)
10 3llw_A Geranyltranstransferase 22.2 1E+02 0.0035 29.2 5.2 40 290-329 222-270 (311)
11 3pde_A Farnesyl-diphosphate sy 20.4 1.3E+02 0.0044 28.5 5.5 40 292-331 219-269 (309)
No 1
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=37.72 E-value=94 Score=28.78 Aligned_cols=44 Identities=9% Similarity=0.133 Sum_probs=30.4
Q ss_pred HHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHHHHHH
Q 015718 293 VIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYG 336 (402)
Q Consensus 293 ~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~~a~~ 336 (402)
+..+-.|+++.++|.++|+.|.=.++|...+....-.++..++-
T Consensus 75 aSLIHDDI~~dD~d~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~ 118 (274)
T 3kra_B 75 AAYVHEHLPLTDGSRPVSKPAIQHKYGPNVELLTGDGIVPFGFE 118 (274)
T ss_dssp HHHHHHTCCCSSSSSCCCSSCCCCSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCcccCCccCCCCCCchhhcChHHHHHHHHHHHHHHHH
Confidence 34455699944446679999999999999776665455444443
No 2
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=27.79 E-value=37 Score=32.14 Aligned_cols=40 Identities=18% Similarity=0.247 Sum_probs=25.7
Q ss_pred HHHHHHHhhhcChhh-----------hhhcCCceehhhhcHHHHHHHHHHH
Q 015718 291 CVVIAFIKDLHDVDG-----------DKKFGIKTLSVMLGKERVFRLSVSM 330 (402)
Q Consensus 291 ~~~~~~i~di~D~eg-----------D~~~G~~Tlpv~lG~k~a~~l~~~l 330 (402)
.+++.+..|+.|..+ |.+.|+.|+|+.+|.+.++....-.
T Consensus 216 GlaFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~ 266 (304)
T 3lsn_A 216 GLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPALLGLAAAKEYALEL 266 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHC------------CCHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCChHHhCCCcccHHhcCCccHHHHHHHHHHHHHHHHH
Confidence 345567778888755 6678999999999999888765433
No 3
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=27.20 E-value=42 Score=32.11 Aligned_cols=40 Identities=15% Similarity=0.232 Sum_probs=25.9
Q ss_pred HHHHHHHhhhcChhh-----------hhhcCCceehhhhcHHHHHHHHHHH
Q 015718 291 CVVIAFIKDLHDVDG-----------DKKFGIKTLSVMLGKERVFRLSVSM 330 (402)
Q Consensus 291 ~~~~~~i~di~D~eg-----------D~~~G~~Tlpv~lG~k~a~~l~~~l 330 (402)
.+++.+..|+.|+.+ |.+.|+.|+|+.+|.+.++....-.
T Consensus 222 GlAFQI~DDiLD~~~d~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~ 272 (324)
T 3ts7_A 222 GLAFQIQDDILDEESDTQTLGKTRGKDRDHNKPNYPALLGLSGAKEKAEEM 272 (324)
T ss_dssp HHHHHHHHHHHHHTCC---------------CCCHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHH
Confidence 345566677777654 6788999999999999888765433
No 4
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=26.32 E-value=45 Score=31.71 Aligned_cols=39 Identities=15% Similarity=0.181 Sum_probs=25.6
Q ss_pred HHHHHHHhhhcChhh-----------hhhcCCceehhhhcHHHHHHHHHH
Q 015718 291 CVVIAFIKDLHDVDG-----------DKKFGIKTLSVMLGKERVFRLSVS 329 (402)
Q Consensus 291 ~~~~~~i~di~D~eg-----------D~~~G~~Tlpv~lG~k~a~~l~~~ 329 (402)
.+++.+..|+.|+.+ |.+.|+.|+|+.+|.+.++....-
T Consensus 223 GlaFQI~DDilD~~gd~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~a~~ 272 (313)
T 3lom_A 223 GLVFQMQDDYLDLYAPTQILGKGRSSDQANQKTTFATLFNKQQLEEEIAV 272 (313)
T ss_dssp HHHHHHHHHHHHHHCC---------------CCCHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCHHhhCCCCcchhhcCCccHHHHHHHHHHHHHHHH
Confidence 345566677777754 668899999999999988876543
No 5
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=24.22 E-value=44 Score=31.62 Aligned_cols=38 Identities=18% Similarity=0.296 Sum_probs=24.3
Q ss_pred HHHHHHhhhcChhh-----------hhhcCCceehhhhcHHHHHHHHHH
Q 015718 292 VVIAFIKDLHDVDG-----------DKKFGIKTLSVMLGKERVFRLSVS 329 (402)
Q Consensus 292 ~~~~~i~di~D~eg-----------D~~~G~~Tlpv~lG~k~a~~l~~~ 329 (402)
+++.+..|+.|..+ |.+.|+.|+|+.+|.+.++....-
T Consensus 223 ~aFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~ 271 (302)
T 3p8r_A 223 LAFQVQDDILDIISDTETLGKPQGSDQELNKSTYPALLGLEGAQQKAHT 271 (302)
T ss_dssp HHHHHHHHHHHHTTC---------------CCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCHHHhCCCcchHHhcCCchHHHHHHHHHHHHHHHH
Confidence 44556667776644 677899999999999988776543
No 6
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=24.05 E-value=54 Score=31.25 Aligned_cols=40 Identities=20% Similarity=0.269 Sum_probs=26.9
Q ss_pred HHHHHHHhhhcChhh-----------hhhcCCceehhhhcHHHHHHHHHHH
Q 015718 291 CVVIAFIKDLHDVDG-----------DKKFGIKTLSVMLGKERVFRLSVSM 330 (402)
Q Consensus 291 ~~~~~~i~di~D~eg-----------D~~~G~~Tlpv~lG~k~a~~l~~~l 330 (402)
.+++.+..|+.|+.+ |.+.|+.|+|+.+|.+.++....-.
T Consensus 215 GlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~ 265 (317)
T 4f62_A 215 GLAFQVQDDIIDLTSDTETLGKTQFSDAEANKATYPKLLGLDGAKALVVRL 265 (317)
T ss_dssp HHHHHHHHHHHHTC----------------CCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCChHhhCCCcchHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 345567778877744 6678999999999999888776443
No 7
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=22.91 E-value=48 Score=31.33 Aligned_cols=40 Identities=18% Similarity=0.182 Sum_probs=24.5
Q ss_pred HHHHHHHhhhcChh-----------hhhhcCCceehhhhcHHHHHHHHHHH
Q 015718 291 CVVIAFIKDLHDVD-----------GDKKFGIKTLSVMLGKERVFRLSVSM 330 (402)
Q Consensus 291 ~~~~~~i~di~D~e-----------gD~~~G~~Tlpv~lG~k~a~~l~~~l 330 (402)
.+++.+..|+.|.. .|.+.|+.|+|+.+|.++++....-.
T Consensus 219 GlaFQI~DDilD~~~d~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~~~~~ 269 (302)
T 3p8l_A 219 GLAFQIRDDLLDATSTEADLGKKVGRDEALNKSTYPALLGIAGAKDALTHQ 269 (302)
T ss_dssp HHHHHHHHHHHHTTC-----------------CCHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCHHHhCCChhhHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 34556667777764 57788999999999999888775443
No 8
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=22.78 E-value=50 Score=31.12 Aligned_cols=40 Identities=20% Similarity=0.290 Sum_probs=23.3
Q ss_pred HHHHHHHHhhhcChhh-----------hhhcCCceehhhhcHHHHHHHHHH
Q 015718 290 FCVVIAFIKDLHDVDG-----------DKKFGIKTLSVMLGKERVFRLSVS 329 (402)
Q Consensus 290 ~~~~~~~i~di~D~eg-----------D~~~G~~Tlpv~lG~k~a~~l~~~ 329 (402)
..+++.+..|+.|..+ |.+.|+.|+|+++|.++++....-
T Consensus 208 lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~~~ 258 (297)
T 3m0g_A 208 LGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLLGLAGAKSRAAD 258 (297)
T ss_dssp HHHHHHHHTTCC---------------------CCHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHH
Confidence 3455677888988865 667899999999999988776543
No 9
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=22.29 E-value=40 Score=32.40 Aligned_cols=38 Identities=21% Similarity=0.205 Sum_probs=24.2
Q ss_pred HHHHHHHhhhcChhh-----------hhhcCCceehhhhcHHHHHHHHH
Q 015718 291 CVVIAFIKDLHDVDG-----------DKKFGIKTLSVMLGKERVFRLSV 328 (402)
Q Consensus 291 ~~~~~~i~di~D~eg-----------D~~~G~~Tlpv~lG~k~a~~l~~ 328 (402)
.+++.+..|+.|+.+ |.+.|+.|+|+.+|.+.++....
T Consensus 255 GlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~~le~a~~~a~ 303 (335)
T 2h8o_A 255 GLSFQLADDLLDLTADAATMGKATGKDAARGKGTLVALRGEAWAREKLQ 303 (335)
T ss_dssp HHHHHHHHHHHHHC-----------------CCCHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHhCCCcchHHhcCCccHHHHHHHHHHHHHHH
Confidence 345566777777754 66789999999999887776653
No 10
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=22.23 E-value=1e+02 Score=29.17 Aligned_cols=40 Identities=20% Similarity=0.327 Sum_probs=28.1
Q ss_pred HHHHHHHHhhhcChhhhh---------hcCCceehhhhcHHHHHHHHHH
Q 015718 290 FCVVIAFIKDLHDVDGDK---------KFGIKTLSVMLGKERVFRLSVS 329 (402)
Q Consensus 290 ~~~~~~~i~di~D~egD~---------~~G~~Tlpv~lG~k~a~~l~~~ 329 (402)
..+++.+..|+.|..+|. +.|+.|+|+++|.+++.....-
T Consensus 222 lGlaFQI~DDiLD~~gd~~~~GK~~g~~~gK~T~p~l~~l~~a~~~~~~ 270 (311)
T 3llw_A 222 MGLCFQVLDDIIDVTQDEEESGKTTHLDSAKNSFVNLLGLERANNYAQT 270 (311)
T ss_dssp HHHHHHHHHHHHHHHC-------------CCSCHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCChHHHCcccccccCcchHHHHHHHHHHHHHHHH
Confidence 335566778888888765 6799999999999988766543
No 11
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=20.39 E-value=1.3e+02 Score=28.45 Aligned_cols=40 Identities=18% Similarity=0.146 Sum_probs=28.4
Q ss_pred HHHHHHhhhcChh-----------hhhhcCCceehhhhcHHHHHHHHHHHH
Q 015718 292 VVIAFIKDLHDVD-----------GDKKFGIKTLSVMLGKERVFRLSVSML 331 (402)
Q Consensus 292 ~~~~~i~di~D~e-----------gD~~~G~~Tlpv~lG~k~a~~l~~~l~ 331 (402)
+++.+..|+.|.. .|.+.|+.|+|+.+|-+++.....-++
T Consensus 219 laFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~~~~~~ 269 (309)
T 3pde_A 219 LAFQIYDDILDVVSSPAEMGKATQKDADEAKNTYPGKLGLIGANQALIDTI 269 (309)
T ss_dssp HHHHHHHHHHHHHCC-----------CTTTSSSHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHhHHHHHHHH
Confidence 4455667777764 577889999999999998877654443
Done!