Query 015718
Match_columns 402
No_of_seqs 386 out of 2259
Neff 7.0
Searched_HMMs 13730
Date Mon Mar 25 17:28:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015718.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/015718hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rtra_ a.128.1.1 (A:) Farnesy 72.0 26 0.0019 30.4 13.1 55 151-206 68-122 (290)
2 d1rqja_ a.128.1.1 (A:) Farnesy 33.7 57 0.0042 28.2 8.1 43 294-336 80-123 (299)
3 d1rtra_ a.128.1.1 (A:) Farnesy 26.0 87 0.0063 26.7 7.9 39 293-331 76-115 (290)
4 d1rqja_ a.128.1.1 (A:) Farnesy 20.0 22 0.0016 31.1 2.3 55 150-205 70-124 (299)
5 d1v4ea_ a.128.1.1 (A:) Octopre 19.8 1.3E+02 0.0093 25.5 7.6 41 293-334 68-108 (280)
6 d2q80a1 a.128.1.1 (A:6-296) Ge 19.3 1.2E+02 0.0089 25.7 7.4 41 293-334 54-94 (291)
7 d2ghfa2 g.37.1.1 (A:9-44) Zinc 9.4 44 0.0032 19.5 0.7 15 6-20 7-21 (36)
8 d2q80a1 a.128.1.1 (A:6-296) Ge 8.6 61 0.0044 27.8 1.7 53 151-206 46-98 (291)
9 d1fpsa_ a.128.1.1 (A:) Farnesy 7.8 62 0.0045 28.5 1.4 28 150-177 84-111 (348)
10 d1v4ea_ a.128.1.1 (A:) Octopre 7.6 60 0.0043 27.8 1.1 50 152-204 61-110 (280)
No 1
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=71.97 E-value=26 Score=30.42 Aligned_cols=55 Identities=13% Similarity=0.068 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhhcccCccccccCCCCCcccccccChHHHHHHHHHHHHHHHHHH
Q 015718 151 VPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYA 206 (402)
Q Consensus 151 l~~~l~~~a~~~~Nd~~D~e~Dr~nk~~RPlasG~is~~~a~~~~~~~~~~~l~la 206 (402)
.+.=+++.+.-+..|+.|.|.|.. +|.+|-.........+...+-.++..++-+.
T Consensus 68 ~avEllH~asLIHDDI~d~D~~~~-RRg~pt~~~~~g~~~Ail~Gd~l~~~a~~l~ 122 (290)
T d1rtra_ 68 IALEMIHTYSLIHDDLPAMDNDDY-RRGKLTNHKVYGEWTAILAGDALLTKAFELI 122 (290)
T ss_dssp HHHHHHHHHHHHHHHSTTTTCCSE-ETTEECHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchhhhhhhhh-hhcchhhHHHhhhhHHHHcCcchhHHHHHHH
Confidence 355678999999999998887754 3445555555666666665555554444443
No 2
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=33.74 E-value=57 Score=28.17 Aligned_cols=43 Identities=21% Similarity=0.339 Sum_probs=31.9
Q ss_pred HHHHhhhcChhh-hhhcCCceehhhhcHHHHHHHHHHHHHHHHH
Q 015718 294 IAFIKDLHDVDG-DKKFGIKTLSVMLGKERVFRLSVSMLSIAYG 336 (402)
Q Consensus 294 ~~~i~di~D~eg-D~~~G~~Tlpv~lG~k~a~~l~~~l~~~a~~ 336 (402)
..+..|++|.+. |.++|.+|.-..+|.+.+....-.++..++-
T Consensus 80 sLiHDDI~d~d~~~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~ 123 (299)
T d1rqja_ 80 SLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFS 123 (299)
T ss_dssp HHHHHTSTTTTCCCEETTEECHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHccchhhhhhhcccccccceeeeCcchhhhhcchHHHHHHH
Confidence 345569998876 5899999999999999877766554444443
No 3
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=26.04 E-value=87 Score=26.74 Aligned_cols=39 Identities=21% Similarity=0.167 Sum_probs=29.1
Q ss_pred HHHHHhhhcChhhh-hhcCCceehhhhcHHHHHHHHHHHH
Q 015718 293 VIAFIKDLHDVDGD-KKFGIKTLSVMLGKERVFRLSVSML 331 (402)
Q Consensus 293 ~~~~i~di~D~egD-~~~G~~Tlpv~lG~k~a~~l~~~l~ 331 (402)
+..+..|++|+++| .++|+.|.-.++|.+.+....-.++
T Consensus 76 asLIHDDI~d~D~~~~RRg~pt~~~~~g~~~Ail~Gd~l~ 115 (290)
T d1rtra_ 76 YSLIHDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALL 115 (290)
T ss_dssp HHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHH
T ss_pred HHHHhcchhhhhhhhhhhcchhhHHHhhhhHHHHcCcchh
Confidence 34455699988665 6999999999999997766654443
No 4
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=19.97 E-value=22 Score=31.11 Aligned_cols=55 Identities=15% Similarity=0.208 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHhhcccCccccccCCCCCcccccccChHHHHHHHHHHHHHHHHH
Q 015718 150 LVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAY 205 (402)
Q Consensus 150 ~l~~~l~~~a~~~~Nd~~D~e~Dr~nk~~RPlasG~is~~~a~~~~~~~~~~~l~l 205 (402)
..++=++|.+.-+..|+.|.|.|.. +|.+|-.-.......|...+-.++..++-+
T Consensus 70 A~aiEllH~asLiHDDI~d~d~~~~-RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~ 124 (299)
T d1rqja_ 70 AAAVECIHAYSLIHDDLPAMDDDDL-RRGLPTCHVKFGEANAILAGDALQTLAFSI 124 (299)
T ss_dssp HHHHHHHHHHHHHHHTSTTTTCCCE-ETTEECHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccchhhhhhhc-ccccccceeeeCcchhhhhcchHHHHHHHH
Confidence 4456678999999999998876643 233444434455666666555555444443
No 5
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga maritima [TaxId: 2336]}
Probab=19.81 E-value=1.3e+02 Score=25.48 Aligned_cols=41 Identities=20% Similarity=0.212 Sum_probs=30.1
Q ss_pred HHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHHHH
Q 015718 293 VIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIA 334 (402)
Q Consensus 293 ~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~~a 334 (402)
+..+..|+.| ++|.++|.+|.-..+|...+....-.++..+
T Consensus 68 asLIhDDi~D-~s~~RRG~pt~h~~~g~~~ail~gd~l~~~a 108 (280)
T d1v4ea_ 68 ASLLHDDVID-GARFRRGKETINFMYGDKAAVAAGDLVLVSA 108 (280)
T ss_dssp HHHHHHHHHH-TCSEETTEECHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHhh-hcccccccchhhhccchhhhhhhHHHHHHhh
Confidence 3345568888 6789999999999999998766654444333
No 6
>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.34 E-value=1.2e+02 Score=25.69 Aligned_cols=41 Identities=15% Similarity=0.240 Sum_probs=28.9
Q ss_pred HHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHHHH
Q 015718 293 VIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIA 334 (402)
Q Consensus 293 ~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~~a 334 (402)
+..+..|+.| ++|.++|..|.=..+|.+.+....-.++..+
T Consensus 54 asLihDDi~D-~~~~RRg~pt~~~~~G~~~Ail~gd~l~~~a 94 (291)
T d2q80a1 54 ASLLIDDIED-NSKLRRGFPVAHSIYGIPSVINSANYVYFLG 94 (291)
T ss_dssp HHHHHHHHHH-TCSEETTEECHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHhccccc-CcccccCCCccccccchhhhhhHHHHHHHHH
Confidence 3445568876 4478899999999999997766654444333
No 7
>d2ghfa2 g.37.1.1 (A:9-44) Zinc fingers and homeoboxes protein 1, ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.43 E-value=44 Score=19.45 Aligned_cols=15 Identities=20% Similarity=0.479 Sum_probs=11.1
Q ss_pred ccccccccccccccc
Q 015718 6 LSSSFSLKYHPLQKA 20 (402)
Q Consensus 6 ~~~~~~~~~~~~~~~ 20 (402)
+...|.-||||.|-+
T Consensus 7 ~qGGyECKYC~f~Tq 21 (36)
T d2ghfa2 7 VEGGYECKYCTFQTP 21 (36)
T ss_dssp CCSSEECSSCSCEES
T ss_pred ccCCeeeeecCcccc
Confidence 345678899999865
No 8
>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.59 E-value=61 Score=27.85 Aligned_cols=53 Identities=13% Similarity=0.100 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhhcccCccccccCCCCCcccccccChHHHHHHHHHHHHHHHHHH
Q 015718 151 VPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYA 206 (402)
Q Consensus 151 l~~~l~~~a~~~~Nd~~D~e~Dr~nk~~RPlasG~is~~~a~~~~~~~~~~~l~la 206 (402)
.++=+++.+.-+.+|+.|-+.=|.++ |-.........|+..+-.++..++-..
T Consensus 46 ~aiEllH~asLihDDi~D~~~~RRg~---pt~~~~~G~~~Ail~gd~l~~~a~~~l 98 (291)
T d2q80a1 46 EVTEMLHNASLLIDDIEDNSKLRRGF---PVAHSIYGIPSVINSANYVYFLGLEKV 98 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSEETTE---ECHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccCcccccCC---CccccccchhhhhhHHHHHHHHHHHhh
Confidence 34457888999999998776555443 434445566666666655555555433
No 9
>d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=7.81 E-value=62 Score=28.54 Aligned_cols=28 Identities=7% Similarity=0.115 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHhhcccCccccccCCC
Q 015718 150 LVPAVLMHIYVVAINQLSDVEVDKVNKP 177 (402)
Q Consensus 150 ~l~~~l~~~a~~~~Nd~~D~e~Dr~nk~ 177 (402)
..++=++|.++-+..|+.|-+.=|.++|
T Consensus 84 A~avEliH~asLihDDi~D~~~~RRG~p 111 (348)
T d1fpsa_ 84 GWCIELFQAFFLVADDIMDQSLTRRGQL 111 (348)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCEETTEE
T ss_pred HHHHHHHHHHHHHhCccccCCccccccc
Confidence 3455678999999999988777666555
No 10
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga maritima [TaxId: 2336]}
Probab=7.61 E-value=60 Score=27.80 Aligned_cols=50 Identities=8% Similarity=-0.090 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhhcccCccccccCCCCCcccccccChHHHHHHHHHHHHHHHH
Q 015718 152 PAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLA 204 (402)
Q Consensus 152 ~~~l~~~a~~~~Nd~~D~e~Dr~nk~~RPlasG~is~~~a~~~~~~~~~~~l~ 204 (402)
+.=+++.+.-+..|+.|-+.=|. .+|-.-.......+...+-.++..++-
T Consensus 61 aiEliH~asLIhDDi~D~s~~RR---G~pt~h~~~g~~~ail~gd~l~~~a~~ 110 (280)
T d1v4ea_ 61 ALELVHLASLLHDDVIDGARFRR---GKETINFMYGDKAAVAAGDLVLVSAFH 110 (280)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEET---TEECHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHhhhccccc---ccchhhhccchhhhhhhHHHHHHhhhh
Confidence 55678889999999987543333 344444445566666555555544443
Done!