Query 015719
Match_columns 402
No_of_seqs 116 out of 154
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 08:56:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015719.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015719hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03676 UPF0183: Uncharacteri 100.0 5E-127 1E-131 969.8 38.9 366 26-402 1-394 (394)
2 KOG2819 Uncharacterized conser 100.0 1E-119 3E-124 876.7 26.3 373 18-401 1-404 (413)
3 PRK11251 DNA-binding transcrip 53.5 24 0.00053 30.5 4.6 22 233-254 34-55 (109)
4 PF04355 SmpA_OmlA: SmpA / Oml 48.3 7.9 0.00017 30.0 0.7 21 234-254 11-31 (71)
5 COG4454 Uncharacterized copper 44.8 15 0.00032 33.9 2.0 20 300-319 133-152 (158)
6 PF14105 DUF4278: Domain of un 33.5 66 0.0014 24.1 3.7 15 139-153 23-37 (57)
7 PF11399 DUF3192: Protein of u 32.0 33 0.00073 29.4 2.1 27 234-260 30-56 (102)
8 PF15530 Toxin_50: Putative to 31.6 50 0.0011 30.4 3.2 36 121-156 89-137 (168)
9 PF05610 DUF779: Protein of un 31.0 36 0.00078 28.9 2.0 20 17-37 65-84 (95)
10 PF08006 DUF1700: Protein of u 30.9 20 0.00044 32.9 0.6 30 238-267 40-69 (181)
11 PF14504 CAP_assoc_N: CAP-asso 29.7 33 0.00073 30.7 1.8 19 237-255 1-19 (141)
12 PF00609 DAGK_acc: Diacylglyce 27.7 22 0.00048 32.1 0.3 18 281-298 2-19 (161)
13 PF03676 UPF0183: Uncharacteri 22.8 2.8E+02 0.0062 29.2 7.3 75 18-92 197-291 (394)
14 PF02728 Cu_amine_oxidN3: Copp 20.9 1.1E+02 0.0024 25.4 3.3 29 283-311 68-100 (101)
15 KOG2667 COPII vesicle protein 20.5 93 0.002 32.6 3.2 21 115-135 235-257 (379)
16 KOG0782 Predicted diacylglycer 20.4 47 0.001 36.7 1.0 35 260-294 489-532 (1004)
17 PF09697 Porph_ging: Protein o 20.3 34 0.00073 27.4 -0.0 15 373-387 56-70 (70)
No 1
>PF03676 UPF0183: Uncharacterised protein family (UPF0183); InterPro: IPR005373 Members of this family are proteins of unknown function.
Probab=100.00 E-value=4.8e-127 Score=969.77 Aligned_cols=366 Identities=47% Similarity=0.866 Sum_probs=337.2
Q ss_pred CCcccceecCCcHHHHHHHHhcCCCccceEEEEEcCCCCCccceEEEcCCCCeEEEecCCCCeEEEEEEeeCCcceEEEc
Q 015719 26 GVGIGPFSLGMPICEAFASIEQQPNIYDVVHVKYFDEEPLKLDIIISFPDHGFHLRFDPWSQRLRLIEIFDIKRLQMRYA 105 (402)
Q Consensus 26 g~gLG~f~LG~sL~~vl~~Lk~~~~~~~~v~i~Ys~~~Pl~~~Ivi~l~~~GirL~Fd~~~QRL~lIEv~d~~~~~L~Y~ 105 (402)
|.++|+|+|||||||||++||+++++||+|||+||+++|+..||||+||++||||+|||++||||||||+||++++|+|+
T Consensus 1 ~~~~g~f~LG~~l~~vl~~lk~~~~~~~~v~~~Y~~~~P~~~~ivi~l~~~GirL~Fd~~~QrL~lIEv~d~~~i~L~Y~ 80 (394)
T PF03676_consen 1 GNSLGEFVLGMSLHQVLTILKSEPQTFPKVDLIYSDQDPLSSDIVINLPENGIRLRFDGPSQRLRLIEVYDFSKIKLRYK 80 (394)
T ss_pred CCccceEEcCCcHHHHHHHHHhccccCCceEEEECCCCCCcCCEEEEcCCCCeEEEECCCCcEEEEEEEecCccceEEeC
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCcceeeeehhccCCCCCCccCCCCcEEEEeeCceEEEEeCCcccccccccccCCcccccCCCCCcceeEEEE
Q 015719 106 TSLIGGSSTLATFVAVYALFGPTFPGVYDKERSVYMLFYPGLSFAFPIPAQYADCCQDREAELPLEFPDGTTPVTCRVSI 185 (402)
Q Consensus 106 ~~~~~~~~~~~t~~~Iy~~FGPTyPG~y~~~~~~y~LsYpGlaF~F~i~~~~~~~~~~~~~~l~l~~~~~~~p~~~~m~I 185 (402)
+++|++|++.|||++||++|||||||+||+++++|+||||||||+||+++++++.+.++.+ +++++++++|++++|+|
T Consensus 81 ~~~~~~p~~~pTf~~Iy~~FGPTyPG~yd~~~~~YvLsYpGlaF~Fpi~~~~~~~~~~~~~--sl~~~~~ssp~~tsmaI 158 (394)
T PF03676_consen 81 GSVFSSPEIGPTFRHIYRLFGPTYPGEYDKSRGTYVLSYPGLAFSFPIPSKFQSSYSDGLD--SLEFPSGSSPVATSMAI 158 (394)
T ss_pred cccccCcccCcchheeheccCCCCCCccCCCCCEEEEEECCEEEEeeCchhhcccccCCcc--eeecCCCCCcceeEEEE
Confidence 9999999999999999999999999999999999999999999999999988888887753 88999999999999999
Q ss_pred eeCCCCcccccCCcccccCCCCCCC----CceEEEEEEEEcC------CcEEEEecc--------------eeEEcCCCH
Q 015719 186 YDGSADKKVGVGSLFDKAIAPSLPV----GSLYIEEVHAKLG------EELHFTVGS--------------QHIPFGASP 241 (402)
Q Consensus 186 ~~~~~~~~v~~G~s~~e~~~p~l~~----~~~~~~~v~v~~~------~~l~f~~~~--------------~~I~~G~T~ 241 (402)
| +|++|++++.|++|. +++|+++|+|... ..+.|.... ++|+||+||
T Consensus 159 f---------~G~s~~ear~p~lp~~~~~~~~~~~~v~v~~~~~~~~~~~l~l~~~~g~~~~~~~~~~~~~~~I~fGdT~ 229 (394)
T PF03676_consen 159 F---------SGSSWAEARAPPLPLSCYCGNLYLESVEVLRDNKETVGLELSLVTEGGPGRIEEPRRSNFERWIRFGDTP 229 (394)
T ss_pred E---------cCCchhcccCCCccccccCCCcceeeEEeeccCCCCcCcEEEEEEcCCCcccccccccCceEEEEeCCCH
Confidence 9 999999999987764 8889999988433 244444332 699999999
Q ss_pred HHHHHhcCCCCccccccCCceeeccCCCCCCCCCccCcceeeecccceeEEEeCCcceEEEEEeeeCCCCCcCcCceeee
Q 015719 242 QDVWTELGRPCGIHQKQVDQMVIHSASDPRPRSTLCGDYFYNYYTRGLDILFDGQTHKIKKFIMHTNYPGHADFNSYIKC 321 (402)
Q Consensus 242 QDVl~eLGpP~~if~K~Ddrm~IH~~~~~~~~~~~~~dyFyNYF~lGlDiLfd~~th~v~K~ILHtN~PG~y~Fn~Y~RC 321 (402)
|||++|||||++||||+||||+||++++.+...+..+|||||||+||||||||++||+|||||||||+||||+||+|+||
T Consensus 230 qdv~~~lG~P~~~~~k~~d~m~ih~~~~~~~~~~~~~~yf~nYf~~G~Dilfd~~~~~v~K~ILHtN~PG~~~Fn~y~rC 309 (394)
T PF03676_consen 230 QDVLSELGPPDRIFYKSDDRMSIHSPSSHKQVPSKPSDYFYNYFTLGLDILFDGNTHRVKKFILHTNIPGHYDFNRYNRC 309 (394)
T ss_pred HHHHHhhCCccceeecccccccccccccccCCccCCCCEEEeccccceEEEEeCCCceEEEEEEecCCCCCccccceeee
Confidence 99999999999999999999999999888777788899999999999999999999999999999999999999999999
Q ss_pred eEEEecCCCCcc-cccccccccCCCCChHHHHHhhCCCC-CceEecCCCCC--CCCcceEEeeeCCeEEEEEcCCceEEE
Q 015719 322 NFIILGSDCTSA-EVHSYKNKITPNTKWEQVKEILGDCG-RAAIQTQGSTS--NPFGSTFVYGYQNIAFEVMKNGYISTV 397 (402)
Q Consensus 322 ~w~I~~~~~~~~-~~~~~~~~it~~~~~~~i~~~l~~~~-rpvvLnR~~~~--npfG~T~lyG~~giIfEV~~n~~IasV 397 (402)
||+|....++.. +.......|+++++||+|++.|.... +||||||++++ ||||+|+||||+|||||||+||+||||
T Consensus 310 ~f~I~~~~~~~~~~~~~~~~~i~~~~kwd~i~~~L~~~~~~pvvl~r~s~~n~npfGsT~~yG~~~~IfEVm~n~~IasV 389 (394)
T PF03676_consen 310 NFEIELSNDSNETDSPTNSPMITPYTKWDDIQEILGKAEDRPVVLNRASSSNDNPFGSTFLYGYQGIIFEVMKNGHIASV 389 (394)
T ss_pred eeEEEecCcccccccccccceeeccCCHhHhHHhhcccccCCcccccccccCCCCCcceeEeCCCCEEEEEecCCcEEEE
Confidence 999999764332 22223345999999999999997654 99999999886 999999999999999999999999999
Q ss_pred EEeeC
Q 015719 398 TMFQS 402 (402)
Q Consensus 398 Tlf~~ 402 (402)
|||+.
T Consensus 390 Tly~~ 394 (394)
T PF03676_consen 390 TLYQA 394 (394)
T ss_pred EEecC
Confidence 99974
No 2
>KOG2819 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.5e-119 Score=876.74 Aligned_cols=373 Identities=45% Similarity=0.786 Sum_probs=339.6
Q ss_pred eeEEEEecCCcccc----eecCCcHHHHHHHHhcCCCccceEEEEEcCCCCCccceEEEcCCCCeEEEecCCCCeEEEEE
Q 015719 18 AIVLDLRPGVGIGP----FSLGMPICEAFASIEQQPNIYDVVHVKYFDEEPLKLDIIISFPDHGFHLRFDPWSQRLRLIE 93 (402)
Q Consensus 18 ml~l~l~Pg~gLG~----f~LG~sL~~vl~~Lk~~~~~~~~v~i~Ys~~~Pl~~~Ivi~l~~~GirL~Fd~~~QRL~lIE 93 (402)
||+++++|..+||. |+|||+|.||+++|++|++++++|||+||+++||..||||+||++||||+|||.+||||+||
T Consensus 1 ~Ld~tvVpd~~lg~~~~eF~lGMpi~qaiAiiqqh~riik~VqvlYsd~~Pl~~DiIinl~qdGirL~FD~~sQrLKlIE 80 (413)
T KOG2819|consen 1 MLDLTVVPDVSLGSSQWEFVLGMPIAQAIAIIQQHPRIIKNVQVLYSDQDPLSHDIIINLPQDGIRLMFDPFSQRLKLIE 80 (413)
T ss_pred CCceeEecccccCCccceeEecChHHHHHHHHHhCccceeeEEEEEecCCCcceeEEEecCCCceEEEechhhhceeEEE
Confidence 78999999999996 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCcceEEEccccccCCCCcceeeeehhccCCCCCCccCCCCcEEEEeeCceEEEEeCCcccccccccc--cCCcccc
Q 015719 94 IFDIKRLQMRYATSLIGGSSTLATFVAVYALFGPTFPGVYDKERSVYMLFYPGLSFAFPIPAQYADCCQDR--EAELPLE 171 (402)
Q Consensus 94 v~d~~~~~L~Y~~~~~~~~~~~~t~~~Iy~~FGPTyPG~y~~~~~~y~LsYpGlaF~F~i~~~~~~~~~~~--~~~l~l~ 171 (402)
|.|+++++|+|+|..|++|++.||+++|+++|||||||.||++++.|+|+||||||+||.+....+.+-.+ .+..||+
T Consensus 81 V~dl~~vklrY~gv~fnsp~~lpTieqi~~sFGaThPGvYd~~~~iy~l~~~GLSF~fp~~~~~~~~~~~g~~h~l~sL~ 160 (413)
T KOG2819|consen 81 VFDLKKVKLRYCGVHFNSPAILPTIEQIDQSFGATHPGVYDSAHQIYVLSWPGLSFCFPGGENSNPKVHPGFAHGLRSLV 160 (413)
T ss_pred EecceEEEEEEeeeEecCcccchhHHHHHHhhCCCCCCCcCChhhhceeecCceEEECCCCCCCCcccccCccccceeeE
Confidence 99999999999999999999999999999999999999999999999999999999999765444444322 3367999
Q ss_pred cCCCCCcceeEEEEeeCCCCcccccCCcccccCCCCCC----CCceEEEEEEEEcCC----cEEEE--------------
Q 015719 172 FPDGTTPVTCRVSIYDGSADKKVGVGSLFDKAIAPSLP----VGSLYIEEVHAKLGE----ELHFT-------------- 229 (402)
Q Consensus 172 ~~~~~~p~~~~m~I~~~~~~~~v~~G~s~~e~~~p~l~----~~~~~~~~v~v~~~~----~l~f~-------------- 229 (402)
|++|++|+++||.|| .|++..|++.|.+| .|++|.++|++.+.+ ||.+.
T Consensus 161 ~~~g~tPv~~kmsiY---------~g~n~~e~~~~~~plscy~gq~~~rsv~~lr~~~~~~gl~lkl~t~~Gr~l~~~~~ 231 (413)
T KOG2819|consen 161 FPAGATPVVTKMSIY---------RGSNPSEPESPDLPLSCYVGQLYTRSVEVLREGGNPVGLDLKLDTQCGRILLPERV 231 (413)
T ss_pred ecCCCCceeEEEEEe---------cCCCccccccCCccchhhhhhhhhcccccccCCCCccceeEeecccCCcccccccc
Confidence 999999999999999 89999999998655 466777777766542 33322
Q ss_pred -ecceeEEcCCCHHHHHHhcCCCCccccccCCceeeccCCCCCCCCCccCcceeeecccceeEEEeCCcceEEEEEeeeC
Q 015719 230 -VGSQHIPFGASPQDVWTELGRPCGIHQKQVDQMVIHSASDPRPRSTLCGDYFYNYYTRGLDILFDGQTHKIKKFIMHTN 308 (402)
Q Consensus 230 -~~~~~I~~G~T~QDVl~eLGpP~~if~K~Ddrm~IH~~~~~~~~~~~~~dyFyNYF~lGlDiLfd~~th~v~K~ILHtN 308 (402)
...++|.||+|||||+++||+|.+||||+||||+||+++.+|+.++.++|||||||++|+|||||+.||+|||||||||
T Consensus 232 ~v~~r~~~FGdScqDV~t~LGaP~kvf~Ks~DkMkIHs~s~~r~~~t~~ndyFfNYFtlGlDiLFD~~t~kvkKFVLHTN 311 (413)
T KOG2819|consen 232 SVYTRQIYFGDSCQDVQTMLGAPTKVFYKSEDKMKIHSPSPKRQLPTKCNDYFFNYFTLGLDILFDAVTHKVKKFVLHTN 311 (413)
T ss_pred eEeeEeeecCCcHhHHHHHhCCCcccccccccceeecCCCCcccCCCcCcchhhhhhhcchhheeecccceeeEEEEecc
Confidence 3567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCcCceeeeeEEEecCCCCcccccccccccCCCCChHHHHHhhC-CCCCceEecCCCC-CCCCcceEEeeeCCeEE
Q 015719 309 YPGHADFNSYIKCNFIILGSDCTSAEVHSYKNKITPNTKWEQVKEILG-DCGRAAIQTQGST-SNPFGSTFVYGYQNIAF 386 (402)
Q Consensus 309 ~PG~y~Fn~Y~RC~w~I~~~~~~~~~~~~~~~~it~~~~~~~i~~~l~-~~~rpvvLnR~~~-~npfG~T~lyG~~giIf 386 (402)
+|||++||+|+||+|+|.+..+..++ ++...|++++|||+|+++|+ +++|||||.|.++ +||||+|+||||+++||
T Consensus 312 yPGH~dFnmY~rCnF~i~l~ad~~~a--ds~~ei~t~skwD~ise~~~~~~~rPvvlhrq~st~nPFGSTfcyG~q~~if 389 (413)
T KOG2819|consen 312 YPGHCDFNMYHRCNFQIFLNADAAEA--DSQTEIRTYSKWDEISEALGSPPERPVVLHRQSSTSNPFGSTFCYGYQRMIF 389 (413)
T ss_pred CCCcccccceeeeEEEEEccCCcccc--ccCceeccccchhHHHHHhcCCCCCCceeeccccccCCCccchhhhhhhhhh
Confidence 99999999999999999998643333 34456788999999999997 8899999999755 89999999999999999
Q ss_pred EEEcCCceEEEEEee
Q 015719 387 EVMKNGYISTVTMFQ 401 (402)
Q Consensus 387 EV~~n~~IasVTlf~ 401 (402)
|||.|++|+|||+|+
T Consensus 390 Evm~n~~i~svt~yd 404 (413)
T KOG2819|consen 390 EVMENGHIASVTIYD 404 (413)
T ss_pred hhhccCcccceEeec
Confidence 999999999999996
No 3
>PRK11251 DNA-binding transcriptional activator OsmE; Provisional
Probab=53.49 E-value=24 Score=30.52 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=18.9
Q ss_pred eeEEcCCCHHHHHHhcCCCCcc
Q 015719 233 QHIPFGASPQDVWTELGRPCGI 254 (402)
Q Consensus 233 ~~I~~G~T~QDVl~eLGpP~~i 254 (402)
..|..|.|-|+|...||.|...
T Consensus 34 ~qv~~GmTr~qV~~~lGtP~~~ 55 (109)
T PRK11251 34 KDVKKGMTRQQVAQIAGKPSSE 55 (109)
T ss_pred HHcCCCCCHHHHHHHcCCCCcc
Confidence 3678899999999999999754
No 4
>PF04355 SmpA_OmlA: SmpA / OmlA family; InterPro: IPR007450 This is a bacterial outer membrane lipoprotein, possibly involved in maintaining the structural integrity of the cell envelope []. The lipid attachment site is a conserved N-terminal cysteine residue sometimes found adjacent to the OmpA domain (IPR006665 from INTERPRO).; GO: 0019867 outer membrane; PDB: 4DM5_C 2PXG_A 2YH9_B 2KXX_A 2KM7_A.
Probab=48.25 E-value=7.9 Score=30.00 Aligned_cols=21 Identities=29% Similarity=0.324 Sum_probs=17.0
Q ss_pred eEEcCCCHHHHHHhcCCCCcc
Q 015719 234 HIPFGASPQDVWTELGRPCGI 254 (402)
Q Consensus 234 ~I~~G~T~QDVl~eLGpP~~i 254 (402)
.|.-|.|-+||.+.||+|...
T Consensus 11 ~i~~GmTk~qV~~lLG~P~~~ 31 (71)
T PF04355_consen 11 QIKPGMTKDQVRALLGSPSLR 31 (71)
T ss_dssp TT-TTSBHHHHHHHHTS-SEE
T ss_pred hhcCCCCHHHHHHhcCCCCcc
Confidence 567798899999999999887
No 5
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=44.77 E-value=15 Score=33.91 Aligned_cols=20 Identities=25% Similarity=0.316 Sum_probs=16.7
Q ss_pred EEEEEeeeCCCCCcCcCcee
Q 015719 300 IKKFIMHTNYPGHADFNSYI 319 (402)
Q Consensus 300 v~K~ILHtN~PG~y~Fn~Y~ 319 (402)
--|+-+-+|+||||+++++-
T Consensus 133 ~g~ye~~C~iPGHy~AGM~g 152 (158)
T COG4454 133 AGKYEFACNIPGHYEAGMVG 152 (158)
T ss_pred CccEEEEecCCCcccCCcEE
Confidence 34677889999999999975
No 6
>PF14105 DUF4278: Domain of unknown function (DUF4278)
Probab=33.52 E-value=66 Score=24.14 Aligned_cols=15 Identities=20% Similarity=0.239 Sum_probs=9.2
Q ss_pred EEEEeeCceEEEEeC
Q 015719 139 VYMLFYPGLSFAFPI 153 (402)
Q Consensus 139 ~y~LsYpGlaF~F~i 153 (402)
...+.|+|+++.+..
T Consensus 23 ~v~~~YRG~~y~~~~ 37 (57)
T PF14105_consen 23 EVEGTYRGQDYRFRY 37 (57)
T ss_pred ceeeeECcceecccc
Confidence 356777777775543
No 7
>PF11399 DUF3192: Protein of unknown function (DUF3192); InterPro: IPR021534 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=32.03 E-value=33 Score=29.45 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=22.7
Q ss_pred eEEcCCCHHHHHHhcCCCCccccccCC
Q 015719 234 HIPFGASPQDVWTELGRPCGIHQKQVD 260 (402)
Q Consensus 234 ~I~~G~T~QDVl~eLGpP~~if~K~Dd 260 (402)
.+.+|.|-++|++.||.|+-.--|..+
T Consensus 30 ~L~lg~s~~~V~~~lG~pdfsEa~~~~ 56 (102)
T PF11399_consen 30 KLSLGMSKDQVIALLGTPDFSEAYRKD 56 (102)
T ss_pred hcCCCCCHHHHHHHhCCCCchhheeeC
Confidence 678899999999999999987655544
No 8
>PF15530 Toxin_50: Putative toxin 50
Probab=31.62 E-value=50 Score=30.41 Aligned_cols=36 Identities=36% Similarity=0.775 Sum_probs=24.5
Q ss_pred ehhccCCCCCCcc-CCCC----------cEEEEeeC--ceEEEEeCCcc
Q 015719 121 VYALFGPTFPGVY-DKER----------SVYMLFYP--GLSFAFPIPAQ 156 (402)
Q Consensus 121 Iy~~FGPTyPG~y-~~~~----------~~y~LsYp--GlaF~F~i~~~ 156 (402)
|-=.|||=+||.+ |+++ ...-+||- |+.|+|-+-..
T Consensus 89 iGi~FGPYfpg~~gd~~rdyS~~~g~Gv~Sv~~S~gkDG~gfSFgvGps 137 (168)
T PF15530_consen 89 IGISFGPYFPGVFGDPDRDYSINLGFGVGSVEISYGKDGFGFSFGVGPS 137 (168)
T ss_pred EeeecCCcCccccCCCCccceecccccceEeeeeecccCceEEeecCCc
Confidence 3347999999999 5432 22345554 89999988544
No 9
>PF05610 DUF779: Protein of unknown function (DUF779); InterPro: IPR008497 This family consists of several bacterial proteins of unknown function.
Probab=30.96 E-value=36 Score=28.91 Aligned_cols=20 Identities=45% Similarity=0.865 Sum_probs=15.9
Q ss_pred ceeEEEEecCCcccceecCCc
Q 015719 17 GAIVLDLRPGVGIGPFSLGMP 37 (402)
Q Consensus 17 ~ml~l~l~Pg~gLG~f~LG~s 37 (402)
.-|+++|+||+| |.|.|..+
T Consensus 65 t~L~iDVv~GrG-~~FSLE~~ 84 (95)
T PF05610_consen 65 TQLTIDVVPGRG-GGFSLEAP 84 (95)
T ss_pred cEEEEEEEecCC-CeeeccCC
Confidence 457899999999 66877654
No 10
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=30.88 E-value=20 Score=32.86 Aligned_cols=30 Identities=27% Similarity=0.479 Sum_probs=22.6
Q ss_pred CCCHHHHHHhcCCCCccccccCCceeeccC
Q 015719 238 GASPQDVWTELGRPCGIHQKQVDQMVIHSA 267 (402)
Q Consensus 238 G~T~QDVl~eLGpP~~if~K~Ddrm~IH~~ 267 (402)
|+|-||++++||.|..+-++--+...|+..
T Consensus 40 G~sEeeii~~LG~P~~iA~~i~~~~~i~~~ 69 (181)
T PF08006_consen 40 GKSEEEIIAELGSPKEIAREILAEYSIKEE 69 (181)
T ss_pred CCCHHHHHHHcCCHHHHHHHHHHhhhhhhh
Confidence 779999999999999886654444445443
No 11
>PF14504 CAP_assoc_N: CAP-associated N-terminal
Probab=29.74 E-value=33 Score=30.69 Aligned_cols=19 Identities=37% Similarity=0.566 Sum_probs=17.3
Q ss_pred cCCCHHHHHHhcCCCCccc
Q 015719 237 FGASPQDVWTELGRPCGIH 255 (402)
Q Consensus 237 ~G~T~QDVl~eLGpP~~if 255 (402)
||+|.++|.+.||.|.|+-
T Consensus 1 IG~s~~~v~~~~G~P~R~~ 19 (141)
T PF14504_consen 1 IGKSKEEVEEKLGEPDRID 19 (141)
T ss_pred CCCCHHHHHHHcCCccEee
Confidence 6999999999999999874
No 12
>PF00609 DAGK_acc: Diacylglycerol kinase accessory domain; InterPro: IPR000756 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. The DAG kinase domain is assumed to be an accessory domain. Upon cell stimulation, DAG kinase converts DAG into phosphatidate, initiating the resynthesis of phosphatidylinositols and attenuating protein kinase C activity. It catalyses the reaction: ATP + 1,2-diacylglycerol = ADP + 1,2-diacylglycerol 3-phosphate. The enzyme is stimulated by calcium and phosphatidylserine and phosphorylated by protein kinase C. This domain is always associated with IPR001206 from INTERPRO.; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway
Probab=27.73 E-value=22 Score=32.08 Aligned_cols=18 Identities=28% Similarity=0.479 Sum_probs=14.8
Q ss_pred eeeecccceeEEEeCCcc
Q 015719 281 FYNYYTRGLDILFDGQTH 298 (402)
Q Consensus 281 FyNYF~lGlDiLfd~~th 298 (402)
|.|||..|+|.-+....|
T Consensus 2 ~~NYfsiG~DA~ia~~Fh 19 (161)
T PF00609_consen 2 MNNYFSIGVDAQIALGFH 19 (161)
T ss_pred eEecccccHhhHHHHHHh
Confidence 889999999998875433
No 13
>PF03676 UPF0183: Uncharacterised protein family (UPF0183); InterPro: IPR005373 Members of this family are proteins of unknown function.
Probab=22.76 E-value=2.8e+02 Score=29.17 Aligned_cols=75 Identities=15% Similarity=0.170 Sum_probs=52.7
Q ss_pred eeEEEEecCCccc------------ceecCCcHHHHHHHHhcCCCccceEEE---EEc-----CCCCCccceEEEcCCCC
Q 015719 18 AIVLDLRPGVGIG------------PFSLGMPICEAFASIEQQPNIYDVVHV---KYF-----DEEPLKLDIIISFPDHG 77 (402)
Q Consensus 18 ml~l~l~Pg~gLG------------~f~LG~sL~~vl~~Lk~~~~~~~~v~i---~Ys-----~~~Pl~~~Ivi~l~~~G 77 (402)
-+++.+.-+.|.| .+.+|.|-.+|++.|=.-..+|.+-+= +.. .......|..-+--..|
T Consensus 197 ~~~l~l~~~~g~~~~~~~~~~~~~~~I~fGdT~qdv~~~lG~P~~~~~k~~d~m~ih~~~~~~~~~~~~~~yf~nYf~~G 276 (394)
T PF03676_consen 197 GLELSLVTEGGPGRIEEPRRSNFERWIRFGDTPQDVLSELGPPDRIFYKSDDRMSIHSPSSHKQVPSKPSDYFYNYFTLG 276 (394)
T ss_pred CcEEEEEEcCCCcccccccccCceEEEEeCCCHHHHHHhhCCccceeecccccccccccccccCCccCCCCEEEeccccc
Confidence 3556666666555 378999999999999886666654321 122 22334667788889999
Q ss_pred eEEEecCCCCeEEEE
Q 015719 78 FHLRFDPWSQRLRLI 92 (402)
Q Consensus 78 irL~Fd~~~QRL~lI 92 (402)
|.+.||+.+.|++-|
T Consensus 277 ~Dilfd~~~~~v~K~ 291 (394)
T PF03676_consen 277 LDILFDGNTHRVKKF 291 (394)
T ss_pred eEEEEeCCCceEEEE
Confidence 999999988876544
No 14
>PF02728 Cu_amine_oxidN3: Copper amine oxidase, N3 domain; InterPro: IPR015802 Amine oxidases (AO) are enzymes that catalyse the oxidation of a wide range of biogenic amines including many neurotransmitters, histamine and xenobiotic amines. There are two classes of amine oxidases: flavin-containing (1.4.3.4 from EC) and copper-containing (1.4.3.6 from EC). Copper-containing AO act as a disulphide-linked homodimer. They catalyse the oxidation of primary amines to aldehydes, with the subsequent release of ammonia and hydrogen peroxide, which requires one copper ion per subunit and topaquinone as cofactor []: RCH2NH2 + H2O + O2 = RCHO + NH3 + H2O2 Copper-containing amine oxidases are found in bacteria, fungi, plants and animals. In prokaryotes, the enzyme enables various amine substrates to be used as sources of carbon and nitrogen [, ]. In eukaryotes they have a broader range of functions, including cell differentiation and growth, wound healing, detoxification and cell signalling []. The copper amine oxidases occur as mushroom-shaped homodimers of 70-95 kDa, each monomer containing a copper ion and a covalently bound redox cofactor, topaquinone (TPQ). TPQ is formed by post-translational modification of a conserved tyrosine residue. The copper ion is coordinated with three histidine residues and two water molecules in a distorted square pyramidal geometry, and has a dual function in catalysis and TPQ biogenesis. The catalytic domain is the largest of the 3-4 domains found in copper amine oxidases, and consists of a beta sandwich of 18 strands in two sheets. The active site is buried and requires a conformational change to allow the substrate access. The two N-terminal domains share a common structural fold, its core consisting of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the stalk, of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other [, ]. This entry represents one (N3) of the two N-terminal domains (N2/N3) that share a similar structure.; GO: 0005507 copper ion binding, 0008131 primary amine oxidase activity, 0048038 quinone binding, 0009308 amine metabolic process, 0055114 oxidation-reduction process; PDB: 1TU5_A 2PNC_B 3MPH_B 3HII_B 3HI7_A 3K5T_A 3HIG_A 1SPU_A 2WGQ_A 2WO0_A ....
Probab=20.89 E-value=1.1e+02 Score=25.40 Aligned_cols=29 Identities=28% Similarity=0.512 Sum_probs=23.7
Q ss_pred eecccc---eeEEEeCCcceEEEEEeee-CCCC
Q 015719 283 NYYTRG---LDILFDGQTHKIKKFIMHT-NYPG 311 (402)
Q Consensus 283 NYF~lG---lDiLfd~~th~v~K~ILHt-N~PG 311 (402)
|||-|= |=+++|..+..|.|+..+. .+||
T Consensus 68 n~YahPi~gl~~~vD~~~~~vi~i~d~~v~~p~ 100 (101)
T PF02728_consen 68 NFYAHPIEGLEPLVDLDSMEVIRIEDRGVFYPG 100 (101)
T ss_dssp -GGGSEEECEEEEEETTTTEEEEEEEEEEEETT
T ss_pred cccccccCceEEEEECCCCEEEEEEeCCceeeC
Confidence 777764 5589999999999999999 7775
No 15
>KOG2667 consensus COPII vesicle protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.50 E-value=93 Score=32.61 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=17.0
Q ss_pred cceeeeehh--ccCCCCCCccCC
Q 015719 115 LATFVAVYA--LFGPTFPGVYDK 135 (402)
Q Consensus 115 ~~t~~~Iy~--~FGPTyPG~y~~ 135 (402)
...|.|+-+ .||+.|||..+|
T Consensus 235 ~~n~SH~InhLSFG~~~p~~~nP 257 (379)
T KOG2667|consen 235 NLNFSHRINHLSFGEYIPGIVNP 257 (379)
T ss_pred cCCceEEEeeeccCCCCcccccC
Confidence 367888775 999999998665
No 16
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=20.35 E-value=47 Score=36.67 Aligned_cols=35 Identities=23% Similarity=0.436 Sum_probs=22.0
Q ss_pred CceeeccCCCCCCCCC-----cc----CcceeeecccceeEEEe
Q 015719 260 DQMVIHSASDPRPRST-----LC----GDYFYNYYTRGLDILFD 294 (402)
Q Consensus 260 drm~IH~~~~~~~~~~-----~~----~dyFyNYF~lGlDiLfd 294 (402)
||-.||---++.-.+. .. =+.|-|||++|+|.-+-
T Consensus 489 DRW~lhvEpNp~~~pEe~ddG~~~~LPL~VfnNYFSlGfDAHVt 532 (1004)
T KOG0782|consen 489 DRWRLHVEPNPSCNPEEEDDGMQSALPLTVFNNYFSLGFDAHVT 532 (1004)
T ss_pred eeeeecccCCCCCChhhhcccchhccchhHhhccccccccceEE
Confidence 8888886432211111 11 16799999999997654
No 17
>PF09697 Porph_ging: Protein of unknown function (Porph_ging); InterPro: IPR019115 This family of proteins of unknown function is found in species belonging to the bacteroidetes.
Probab=20.26 E-value=34 Score=27.35 Aligned_cols=15 Identities=27% Similarity=0.395 Sum_probs=14.0
Q ss_pred CcceEEeeeCCeEEE
Q 015719 373 FGSTFVYGYQNIAFE 387 (402)
Q Consensus 373 fG~T~lyG~~giIfE 387 (402)
+|+..+.|.||+|+|
T Consensus 56 ~GP~~f~GLPGLILE 70 (70)
T PF09697_consen 56 FGPWKFGGLPGLILE 70 (70)
T ss_pred CCChhhCCCCeEEeC
Confidence 699999999999997
Done!