Query 015719
Match_columns 402
No_of_seqs 116 out of 154
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 17:29:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015719.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015719hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yh9_A Small protein A, BAME p 75.0 2.9 9.8E-05 33.0 4.0 21 234-254 12-32 (88)
2 2km7_A Small protein A; BAME, 66.6 5.8 0.0002 32.3 4.2 22 233-254 25-46 (102)
3 2pxg_A Outer membrane protein; 40.6 26 0.00088 29.3 4.0 21 234-254 25-45 (118)
4 4dm5_A Osmotically inducible l 17.3 51 0.0017 27.2 1.6 22 235-256 24-45 (103)
5 4h0a_A Uncharacterized protein 13.7 59 0.002 31.5 1.3 19 237-255 45-63 (323)
6 3d8d_A Amyloid beta A4 precurs 13.1 4.4E+02 0.015 22.8 6.6 57 37-100 28-85 (148)
7 3h4x_A Phosphatidylinositol-sp 11.9 1.6E+02 0.0055 29.1 3.7 50 15-75 55-130 (339)
8 1f46_A Cell division protein Z 11.3 73 0.0025 27.2 1.0 26 128-155 61-86 (140)
9 3poj_A Mannan-binding lectin s 11.2 1.4E+02 0.0047 23.4 2.6 25 304-330 16-40 (115)
10 2c9r_A COPC, copper resistance 10.7 1.8E+02 0.0062 23.2 3.2 35 62-98 7-42 (102)
No 1
>2yh9_A Small protein A, BAME protein; lipoprotein, 3D domain SWAP, membrane protein; 1.80A {Escherichia coli}
Probab=74.98 E-value=2.9 Score=33.03 Aligned_cols=21 Identities=33% Similarity=0.377 Sum_probs=18.9
Q ss_pred eEEcCCCHHHHHHhcCCCCcc
Q 015719 234 HIPFGASPQDVWTELGRPCGI 254 (402)
Q Consensus 234 ~I~~G~T~QDVl~eLGpP~~i 254 (402)
.|..|.|-++|...||+|..+
T Consensus 12 ~i~~GmTk~qV~~lLG~P~~~ 32 (88)
T 2yh9_A 12 KIRVGMTQQQVAYALGTPLMS 32 (88)
T ss_dssp TCCTTCBHHHHHHHHCSCSEE
T ss_pred hccCCCCHHHHHHHcCCCccc
Confidence 678899999999999999875
No 2
>2km7_A Small protein A; BAME, SMPA, BAM complex, OMP85, YAET, cell membrane, cell OU membrane, lipoprotein, membrane, palmitate, membrane protei; NMR {Escherichia coli} PDB: 2kxx_A
Probab=66.56 E-value=5.8 Score=32.26 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=19.1
Q ss_pred eeEEcCCCHHHHHHhcCCCCcc
Q 015719 233 QHIPFGASPQDVWTELGRPCGI 254 (402)
Q Consensus 233 ~~I~~G~T~QDVl~eLGpP~~i 254 (402)
..|..|.|-++|...||+|..+
T Consensus 25 ~~i~~GmTk~qV~~lLG~P~~~ 46 (102)
T 2km7_A 25 SKIRVGMTQQQVAYALGTPLMS 46 (102)
T ss_dssp TTCCTTCBHHHHHHHHCCCCCC
T ss_pred HhccCCCCHHHHHHhcCCCccc
Confidence 3678899999999999999875
No 3
>2pxg_A Outer membrane protein; two layer alpha/beta plait, two layer sandwich architecture; NMR {Xanthomonas axonopodis PV}
Probab=40.58 E-value=26 Score=29.28 Aligned_cols=21 Identities=33% Similarity=0.388 Sum_probs=18.4
Q ss_pred eEEcCCCHHHHHHhcCCCCcc
Q 015719 234 HIPFGASPQDVWTELGRPCGI 254 (402)
Q Consensus 234 ~I~~G~T~QDVl~eLGpP~~i 254 (402)
.|..|.|-++|...||.|...
T Consensus 25 ql~~GMTk~QV~~lLGtP~~~ 45 (118)
T 2pxg_A 25 QLQVGQSKQQVSALLGTPSIP 45 (118)
T ss_dssp TTCCCSCHHHHHHHHTSCCCC
T ss_pred HccCCCCHHHHHHHcCCCccc
Confidence 567799999999999999875
No 4
>4dm5_A Osmotically inducible lipoprotein OSME; unknown function; HET: MSE; 1.50A {Pseudomonas aeruginosa PAO1}
Probab=17.30 E-value=51 Score=27.19 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=18.7
Q ss_pred EEcCCCHHHHHHhcCCCCcccc
Q 015719 235 IPFGASPQDVWTELGRPCGIHQ 256 (402)
Q Consensus 235 I~~G~T~QDVl~eLGpP~~if~ 256 (402)
|.=|.|-|+|+..+|+|..+..
T Consensus 24 V~~GMTk~qV~rigG~PsS~~~ 45 (103)
T 4dm5_A 24 VEKGMSQQEVLRIGGTPSGTQK 45 (103)
T ss_dssp CCTTCBHHHHHHHHCSCSEEEE
T ss_pred hcCCCCHHHHHHhcCCCcceEE
Confidence 3558899999999999988754
No 5
>4h0a_A Uncharacterized protein; CAP protein family, cysteine-rich secretory proteins, struct genomics, joint center for structural genomics; 1.90A {Staphylococcus aureus subsp}
Probab=13.75 E-value=59 Score=31.53 Aligned_cols=19 Identities=11% Similarity=0.193 Sum_probs=17.8
Q ss_pred cCCCHHHHHHhcCCCCccc
Q 015719 237 FGASPQDVWTELGRPCGIH 255 (402)
Q Consensus 237 ~G~T~QDVl~eLGpP~~if 255 (402)
||++.++|...||.|+|+.
T Consensus 45 IG~~~~~v~~~~G~P~R~~ 63 (323)
T 4h0a_A 45 VGKDIKVLTSKFGQADRVY 63 (323)
T ss_dssp TTSBTHHHHHHHCSCSEEE
T ss_pred hCCCHHHHHHHhCCccccc
Confidence 6999999999999999985
No 6
>3d8d_A Amyloid beta A4 precursor protein-binding family 1; alpha-beta structure, phosphotyrosine binding domain; 2.20A {Homo sapiens} PDB: 3d8e_A 3d8f_A
Probab=13.13 E-value=4.4e+02 Score=22.82 Aligned_cols=57 Identities=18% Similarity=0.280 Sum_probs=34.7
Q ss_pred cHHHHHHHHhcCCCc-cceEEEEEcCCCCCccceEEEcCCCCeEEEecCCCCeEEEEEEeeCCcc
Q 015719 37 PICEAFASIEQQPNI-YDVVHVKYFDEEPLKLDIIISFPDHGFHLRFDPWSQRLRLIEIFDIKRL 100 (402)
Q Consensus 37 sL~~vl~~Lk~~~~~-~~~v~i~Ys~~~Pl~~~Ivi~l~~~GirL~Fd~~~QRL~lIEv~d~~~~ 100 (402)
.+.++|..|+..+.. .....=.|.+ ..+.++.+.++++|| .|+.+|-+ |+-+-+.+|
T Consensus 28 ~v~~~ir~L~~~~~~~~d~~~~~wg~----gq~~~L~v~~~tlrL-vD~~tk~~--L~~~pI~~I 85 (148)
T 3d8d_A 28 AVNNCIRQLSYHKNNLHDPMSGGWGE----GKDLLLQLEDETLKL-VEPQSQAL--LHAQPIISI 85 (148)
T ss_dssp HHHHHHHHHTTCCCCCCCTTSTTCST----TCEEEEEEETTEEEE-ECTTTCCE--EEEEEGGGC
T ss_pred HHHHHHHHHHhccccccccccccccc----CceEEEEEcCCeEEE-ecCCCCce--EEEeeEEEE
Confidence 488999999875421 1101011222 368999999998988 68877765 444444433
No 7
>3h4x_A Phosphatidylinositol-specific phospholipase C1; PI-PLC, Ca2+-dependent, catalytic TIM barrel, disulfide-LINK loop, hydrolase; 1.23A {Streptomyces antibioticus} PDB: 3h4w_A
Probab=11.88 E-value=1.6e+02 Score=29.06 Aligned_cols=50 Identities=14% Similarity=0.250 Sum_probs=37.5
Q ss_pred ccceeEEEEecCCcccceec------C--------------------CcHHHHHHHHhcCCCccceEEEEEcCCCCCccc
Q 015719 15 AMGAIVLDLRPGVGIGPFSL------G--------------------MPICEAFASIEQQPNIYDVVHVKYFDEEPLKLD 68 (402)
Q Consensus 15 ~~~ml~l~l~Pg~gLG~f~L------G--------------------~sL~~vl~~Lk~~~~~~~~v~i~Ys~~~Pl~~~ 68 (402)
+..+|+|+|.|.-.=|.+.+ | .+|.+||..||. |++.+|-.-|
T Consensus 55 GVR~LELDIw~n~~~g~~~V~Hg~~l~~~nnC~~as~~~dL~t~Tt~~tL~~CL~~IK~-----------WsdahPsh~P 123 (339)
T 3h4x_A 55 GAALLELDLWSNALGRSWRVSHSNPLGNNSNCEGAANASELRTKSRDQDFAGCLSDMRA-----------WHDAHPGHRP 123 (339)
T ss_dssp CCSEEEEEEESSSSSSSCEECSSSCSSCCSSCCCCSSGGGTTCSCCCCCHHHHHHHHHH-----------HHHHSTTCCC
T ss_pred CCCEEEEEeecCCCCCCeEEeCCCcccccccccccccccccccCCCCcCHHHHHHHHHH-----------HHHhCCCCCc
Confidence 45789999999843232221 1 579999999998 7888898999
Q ss_pred eEEEcCC
Q 015719 69 IIISFPD 75 (402)
Q Consensus 69 Ivi~l~~ 75 (402)
|+|.|..
T Consensus 124 ViI~LE~ 130 (339)
T 3h4x_A 124 ILLKIEM 130 (339)
T ss_dssp EEEEEEE
T ss_pred eEEEEec
Confidence 9988853
No 8
>1f46_A Cell division protein ZIPA; transmembrane, inner membrane, cell cycle; 1.50A {Escherichia coli} SCOP: d.129.4.1 PDB: 1f47_B 1s1j_A* 1s1s_A* 1y2g_A* 1f7w_A 1f7x_A 1y2f_A*
Probab=11.27 E-value=73 Score=27.22 Aligned_cols=26 Identities=27% Similarity=0.609 Sum_probs=19.5
Q ss_pred CCCCccCCCCcEEEEeeCceEEEEeCCc
Q 015719 128 TFPGVYDKERSVYMLFYPGLSFAFPIPA 155 (402)
Q Consensus 128 TyPG~y~~~~~~y~LsYpGlaF~F~i~~ 155 (402)
+-||.||++ .=..++|||+|.+.+|.
T Consensus 61 ~~pg~Fd~~--~~~~~t~gvtlfl~lP~ 86 (140)
T 1f46_A 61 VKPGTFDPE--MKDFTTPGVTIFMQVPS 86 (140)
T ss_dssp STTCCCCTT--CCSCEESEEEEEEEECS
T ss_pred CCCCCCCcc--hhcCccCcEEEEEECCC
Confidence 457777764 32458899999999985
No 9
>3poj_A Mannan-binding lectin serine protease 1; CUB domain, Ca2+ binding site, complex with ethylamine, COMP protein, lectin pathway of complement; 1.45A {Rattus norvegicus} PDB: 3pob_A 3pof_A 3pog_A 3poi_A 3poe_A
Probab=11.22 E-value=1.4e+02 Score=23.39 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=18.3
Q ss_pred EeeeCCCCCcCcCceeeeeEEEecCCC
Q 015719 304 IMHTNYPGHADFNSYIKCNFIILGSDC 330 (402)
Q Consensus 304 ILHtN~PG~y~Fn~Y~RC~w~I~~~~~ 330 (402)
|.--|+|+.|.=| ..|.|.|....+
T Consensus 16 i~SP~yP~~Yp~~--~~C~w~I~~~~g 40 (115)
T 3poj_A 16 ITSPDYPNPYPKS--SECSYTIDLEEG 40 (115)
T ss_dssp EECTTTTSCCCTT--CEEEEEEECCTT
T ss_pred EcCCCCCcCCcCC--CeEEEEEEcCCC
Confidence 3344889877643 579999999764
No 10
>2c9r_A COPC, copper resistance protein C; copper transport, copper proteins, copper dissociation const metal-binding, electron transport; 2.0A {Pseudomonas syringae PV} PDB: 1m42_A 1nm4_A 1ot4_A 2c9p_A 2c9q_A
Probab=10.73 E-value=1.8e+02 Score=23.19 Aligned_cols=35 Identities=11% Similarity=0.072 Sum_probs=24.6
Q ss_pred CCCCccceEEEcCCCCeEEEecCCCC-eEEEEEEeeCC
Q 015719 62 EEPLKLDIIISFPDHGFHLRFDPWSQ-RLRLIEIFDIK 98 (402)
Q Consensus 62 ~~Pl~~~Ivi~l~~~GirL~Fd~~~Q-RL~lIEv~d~~ 98 (402)
.+|...-.+ .-|+. |+|.|+..-+ ++.-|.|.|.+
T Consensus 7 s~Pa~ga~v-~aP~~-v~L~Fse~v~~~~s~v~v~~~~ 42 (102)
T 2c9r_A 7 STPAEGSEG-AAPAK-IELHFSENLVTQFSGAKLVMTA 42 (102)
T ss_dssp EESCTTCEE-SCCSC-EEEEESSCCCGGGCEEEEEEEE
T ss_pred cCCCCcCEE-CCCCE-EEEEeCCCCccCccEEEEECCC
Confidence 457677777 66655 9999998543 66677777664
Done!