BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015720
(402 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OXW|A Chain A, The Crystal Structure Of Semet Patatin
pdb|1OXW|B Chain B, The Crystal Structure Of Semet Patatin
pdb|1OXW|C Chain C, The Crystal Structure Of Semet Patatin
Length = 373
Score = 312 bits (800), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 177/389 (45%), Positives = 233/389 (59%), Gaps = 35/389 (8%)
Query: 18 ITILSXXXXXXXXXXXXXXLAYLESQLQELDGE-DARLADYFDVIAGTSTGGLLTAMLTA 76
+T+LS L +LE QLQE D DARLADYFDVI GTSTGGLLTA ++
Sbjct: 16 VTVLSIDGGGIRGIIPATILEFLEGQLQEXDNNADARLADYFDVIGGTSTGGLLTAXIST 75
Query: 77 PSEQNRPMYAAKDIVPFYIRHGPKIFPQLRGMLANSVVNLVRALMGTKYDGKYLHKVIKE 136
P+E NRP AAK+IVPFY HGP+IF N ++G KYDGKYL +V++E
Sbjct: 76 PNENNRPFAAAKEIVPFYFEHGPQIF------------NPSGQILGPKYDGKYLXQVLQE 123
Query: 137 NLKDTKLHQTLTNVAIPTFDIKKLQPTIFSSFQVAASPDLDAQLADIAIGTSAAPTYFPA 196
L +T++HQ LT V I +FDIK +P IF+ +A SP+LDA+ DI+ T+AAPTYFP
Sbjct: 124 KLGETRVHQALTEVVISSFDIKTNKPVIFTKSNLANSPELDAKXYDISYSTAAAPTYFPP 183
Query: 197 HYFKNPDEHGTLKEFNLIDGGVA-ANNPTLVAISEMTKHILKNPDFCPINPLDYTRFLVI 255
HYF +G EFNL+DG VA +P L++IS T+ K+P F I L+Y + L++
Sbjct: 184 HYFVTNTSNGDEYEFNLVDGAVATVADPALLSISVATRLAQKDPAFASIRSLNYKKXLLL 243
Query: 256 SIGTGSKKSEHK-YNAKMASKWGIISW-LYDNGDTPLLDCYGRAIGDMVDYHISVVFQAL 313
S+GTG+ K Y AK A+ W + W L T Y DY++S FQAL
Sbjct: 244 SLGTGTTSEFDKTYTAKEAATWTAVHWXLVIQKXTDAASSY------XTDYYLSTAFQAL 297
Query: 314 QSEDNYLRIEDDTLQGDVTSIDLTTKENFENLVRAGETLLKKPVSRINLDTGLYEPIENG 373
S++NYLR++++ L G T D ++ N E LV+ GE LLKKPVS N +
Sbjct: 298 DSKNNYLRVQENALTGTTTEXDDASEANXELLVQVGENLLKKPVSEDNPE---------- 347
Query: 374 SAGTNEEALKRFAKMLSDERKLRESKSPH 402
T EEALKRFAK+LSD +KLR +K+ +
Sbjct: 348 ---TYEEALKRFAKLLSDRKKLRANKASY 373
>pdb|3AIK|A Chain A, Crystal Structure Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIK|B Chain B, Crystal Structure Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIK|C Chain C, Crystal Structure Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIK|D Chain D, Crystal Structure Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIL|A Chain A, Crystal Structure Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii Complexed With Paraoxon
pdb|3AIL|B Chain B, Crystal Structure Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii Complexed With Paraoxon
pdb|3AIL|C Chain C, Crystal Structure Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii Complexed With Paraoxon
pdb|3AIL|D Chain D, Crystal Structure Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii Complexed With Paraoxon
Length = 323
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 86/210 (40%), Gaps = 26/210 (12%)
Query: 139 KDTKLHQTLTNVAIPTFDIKKLQPTIFSSFQVAASPDLDAQLADIAIGTSAAPTYFPAHY 198
K KL ++ + I +++++ ++F F + ++ DI I S +Y
Sbjct: 25 KIKKLLESTIQLPIGKASVEEIR-SLFKQFSSLTPREEVGKIEDITIPGSETNIKARVYY 83
Query: 199 FKNPDEHGTLKEFN---LIDGGVAANNPTLVAISEMTKHILKNPDFCPINPLDYTRFLVI 255
K +G L ++ + G + + +P AI+ + C +DY
Sbjct: 84 PKTQGPYGVLVYYHGGGFVLGDIESYDPLCRAITNSCQ--------CVTISVDYRL---- 131
Query: 256 SIGTGSKKSEHKYNAKMASKWGIISWLYDNGDTPLLDCYGRAI-GDMVDYHISVVFQALQ 314
E+K+ A + + + W+Y+N + YG A+ GD +++ V L
Sbjct: 132 -------APENKFPAAVVDSFDALKWVYNNSEK-FNGKYGIAVGGDSAGGNLAAVTAILS 183
Query: 315 SEDNYLRIEDDTLQGDVTSIDLTTKENFEN 344
++N ++++ L S DL TK ++N
Sbjct: 184 KKEN-IKLKYQVLIYPAVSFDLITKSLYDN 212
>pdb|3AIO|A Chain A, R267k Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIO|B Chain B, R267k Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIO|C Chain C, R267k Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIO|D Chain D, R267k Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
Length = 323
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 86/210 (40%), Gaps = 26/210 (12%)
Query: 139 KDTKLHQTLTNVAIPTFDIKKLQPTIFSSFQVAASPDLDAQLADIAIGTSAAPTYFPAHY 198
K KL ++ + I +++++ ++F F + ++ DI I S +Y
Sbjct: 25 KIKKLLESTIQLPIGKASVEEIR-SLFKQFSSLTPREEVGKIEDITIPGSETNIKARVYY 83
Query: 199 FKNPDEHGTLKEFN---LIDGGVAANNPTLVAISEMTKHILKNPDFCPINPLDYTRFLVI 255
K +G L ++ + G + + +P AI+ + C +DY
Sbjct: 84 PKTQGPYGVLVYYHGGGFVLGDIESYDPLCRAITNSCQ--------CVTISVDYRL---- 131
Query: 256 SIGTGSKKSEHKYNAKMASKWGIISWLYDNGDTPLLDCYGRAI-GDMVDYHISVVFQALQ 314
E+K+ A + + + W+Y+N + YG A+ GD +++ V L
Sbjct: 132 -------APENKFPAAVVDSFDALKWVYNNSEK-FNGKYGIAVGGDSAGGNLAAVTAILS 183
Query: 315 SEDNYLRIEDDTLQGDVTSIDLTTKENFEN 344
++N ++++ L S DL TK ++N
Sbjct: 184 KKEN-IKLKYQVLIYPAVSFDLITKSLYDN 212
>pdb|3AIM|A Chain A, R267e Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIM|B Chain B, R267e Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIM|C Chain C, R267e Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIM|D Chain D, R267e Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
Length = 323
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 86/210 (40%), Gaps = 26/210 (12%)
Query: 139 KDTKLHQTLTNVAIPTFDIKKLQPTIFSSFQVAASPDLDAQLADIAIGTSAAPTYFPAHY 198
K KL ++ + I +++++ ++F F + ++ DI I S +Y
Sbjct: 25 KIKKLLESTIQLPIGKASVEEIR-SLFKQFSSLTPREEVGKIEDITIPGSETNIKARVYY 83
Query: 199 FKNPDEHGTLKEFN---LIDGGVAANNPTLVAISEMTKHILKNPDFCPINPLDYTRFLVI 255
K +G L ++ + G + + +P AI+ + C +DY
Sbjct: 84 PKTQGPYGVLVYYHGGGFVLGDIESYDPLCRAITNSCQ--------CVTISVDYRL---- 131
Query: 256 SIGTGSKKSEHKYNAKMASKWGIISWLYDNGDTPLLDCYGRAI-GDMVDYHISVVFQALQ 314
E+K+ A + + + W+Y+N + YG A+ GD +++ V L
Sbjct: 132 -------APENKFPAAVVDSFDALKWVYNNSEK-FNGKYGIAVGGDSAGGNLAAVTAILS 183
Query: 315 SEDNYLRIEDDTLQGDVTSIDLTTKENFEN 344
++N ++++ L S DL TK ++N
Sbjct: 184 KKEN-IKLKYQVLIYPAVSFDLITKSLYDN 212
>pdb|3AIN|A Chain A, R267g Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIN|B Chain B, R267g Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIN|C Chain C, R267g Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIN|D Chain D, R267g Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
Length = 323
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 86/210 (40%), Gaps = 26/210 (12%)
Query: 139 KDTKLHQTLTNVAIPTFDIKKLQPTIFSSFQVAASPDLDAQLADIAIGTSAAPTYFPAHY 198
K KL ++ + I +++++ ++F F + ++ DI I S +Y
Sbjct: 25 KIKKLLESTIQLPIGKASVEEIR-SLFKQFSSLTPREEVGKIEDITIPGSETNIKARVYY 83
Query: 199 FKNPDEHGTLKEFN---LIDGGVAANNPTLVAISEMTKHILKNPDFCPINPLDYTRFLVI 255
K +G L ++ + G + + +P AI+ + C +DY
Sbjct: 84 PKTQGPYGVLVYYHGGGFVLGDIESYDPLCRAITNSCQ--------CVTISVDYRL---- 131
Query: 256 SIGTGSKKSEHKYNAKMASKWGIISWLYDNGDTPLLDCYGRAI-GDMVDYHISVVFQALQ 314
E+K+ A + + + W+Y+N + YG A+ GD +++ V L
Sbjct: 132 -------APENKFPAAVVDSFDALKWVYNNSEK-FNGKYGIAVGGDSAGGNLAAVTAILS 183
Query: 315 SEDNYLRIEDDTLQGDVTSIDLTTKENFEN 344
++N ++++ L S DL TK ++N
Sbjct: 184 KKEN-IKLKYQVLIYPAVSFDLITKSLYDN 212
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,957,119
Number of Sequences: 62578
Number of extensions: 503887
Number of successful extensions: 1192
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1186
Number of HSP's gapped (non-prelim): 7
length of query: 402
length of database: 14,973,337
effective HSP length: 101
effective length of query: 301
effective length of database: 8,652,959
effective search space: 2604540659
effective search space used: 2604540659
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)