BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015721
(402 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure
pdb|2P1N|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1N|E Chain E, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1O|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1P|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1Q|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|3C6N|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3C6O|B Chain B, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
Length = 594
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 93/215 (43%), Gaps = 50/215 (23%)
Query: 12 DDELRSILSRLEDDKDKERFGLVCKRWLHLQSTERKKLSV-------------------- 51
++ L + S ++ DKD+ LVCK W ++ R+K+ +
Sbjct: 11 EEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRS 70
Query: 52 ---RAGPHM-----------------LRKIAARFSRLVELDLSQSVSRSFYPGVTDSDLA 91
+ PH + +++ ++ L E+ L + V VTD L
Sbjct: 71 VELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-------VTDDCLE 123
Query: 92 VIADGFKSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDL--SYCRKLTDKGLSAVAEGC 149
+IA FK+ K+L L +C+G + G+A+I + +L+ LDL S ++ LS +
Sbjct: 124 LIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183
Query: 150 QDLRSLHLAGCKS-VTDGTLQALSKNCRNLEELGL 183
L SL+++ S V+ L+ L C NL+ L L
Sbjct: 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKL 218
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 59/277 (21%), Positives = 111/277 (40%), Gaps = 32/277 (11%)
Query: 141 GLSAVAEGCQDLRSLHLAGCKSVTDGTLQALSKNCRNLEELGLLGCTSISDSGVIDLVNG 200
GLS GC++LR L +G L A+ C L L L ++ ++ L+
Sbjct: 256 GLSVALSGCKELRCL--SGFWDAVPAYLPAVYSVCSRLTTLNL-SYATVQSYDLVKLL-- 310
Query: 201 CQNIKFLDLNKCSNIGDNGIXXXXXX--------XXXXXXXXXXDCYKVGDKSILSLAKF 252
CQ K L I D G+ + ++ ++S++
Sbjct: 311 CQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMG 370
Query: 253 CKNLETLIIGGCRDISDESIKHLAASCKSSLKNLRM--------DW-CLNISDSSLSCIL 303
C LE+ ++ CR +++ ++ +A + + ++ R+ D+ L D I+
Sbjct: 371 CPKLES-VLYFCRQMTNAALITIARN-RPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIV 428
Query: 304 SQCRNLEALDIGCCEEVTDAAFQDLGEVELSLKVLKVNCPKVTVVGIGNVLEKCASLEYI 363
C++L L + +TD F+ +G +++L V + +G+ +VL C SL +
Sbjct: 429 EHCKDLRRLSLS--GLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKL 486
Query: 364 DVRSCPHVTQA------SCEEAGLQFPQCCKVNFAGC 394
++R CP +A E + C V+F C
Sbjct: 487 EIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGAC 523
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 5/124 (4%)
Query: 241 VGDKSILSLAKFCKNLETLIIGGCRDISDESIKHLAASCKSSLK--NLRMDWCLNISDSS 298
V D + +AK KN + L++ C S + + +AA+C+ +LK +LR ++S
Sbjct: 117 VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCR-NLKELDLRESDVDDVSGHW 175
Query: 299 LSCILSQCRNLEALDIGC-CEEVTDAAFQDLGEVELSLKVLKVNCPKVTVVGIGNVLEKC 357
LS +L +L+I C EV+ +A + L +LK LK+N V + + +L++
Sbjct: 176 LSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLN-RAVPLEKLATLLQRA 234
Query: 358 ASLE 361
LE
Sbjct: 235 PQLE 238
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 50/228 (21%), Positives = 90/228 (39%), Gaps = 65/228 (28%)
Query: 53 AGPHMLRKIAARFSRLVELDLSQSVSRSF-----------------YPGVTDSDLAVIAD 95
A P L + + SRL L+LS + +S+ + D+ L V+A
Sbjct: 276 AVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLAS 335
Query: 96 GFKSLKLLN--------LQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLT--------- 138
K L+ L ++ +T+ G+ S+ G L+S+ L +CR++T
Sbjct: 336 TCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESV-LYFCRQMTNAALITIAR 394
Query: 139 --------------------------DKGLSAVAEGCQDLRSLHLAGCKSVTDGTLQALS 172
D G A+ E C+DLR L L+ +TD + +
Sbjct: 395 NRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLS--GLLTDKVFEYIG 452
Query: 173 KNCRNLEELGLLGCTSISDSGVIDLVNGCQNIKFLDLNKCSNIGDNGI 220
+ +E L + SD G+ +++GC +++ L++ C GD +
Sbjct: 453 TYAKKMEMLS-VAFAGDSDLGMHHVLSGCDSLRKLEIRDCP-FGDKAL 498
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Query: 86 TDSDLAVIADGFKSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLTDKGLSAV 145
TD I K +++L++ G +D G+ + SG SL+ L++ C DK L A
Sbjct: 444 TDKVFEYIGTYAKKMEMLSVAFA-GDSDLGMHHVLSGCDSLRKLEIRDC-PFGDKALLAN 501
Query: 146 AEGCQDLRSLHLAGCKSVTDGTLQALSKNCRNL 178
A + +RSL ++ C SV+ G + L + L
Sbjct: 502 ASKLETMRSLWMSSC-SVSFGACKLLGQKMPKL 533
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 79/193 (40%), Gaps = 53/193 (27%)
Query: 52 RAGPHMLRKIAARFSRLVELD------LSQSVSRSFYPGVTDSDLAVIADGFKSLKLLNL 105
RA P L K+A R +L+ + V Y G L+V G K L+ L+
Sbjct: 220 RAVP--LEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-----LSVALSGCKELRCLS- 271
Query: 106 QNCKGITDAGIASIGS--GLCS-LQSLDLSY--------------CRKLT---------D 139
G DA A + + +CS L +L+LSY C KL D
Sbjct: 272 ----GFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIED 327
Query: 140 KGLSAVAEGCQDLRSLHLAGCK--------SVTDGTLQALSKNCRNLEELGLLGCTSISD 191
GL +A C+DLR L + + ++T+ L ++S C LE + L C +++
Sbjct: 328 AGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESV-LYFCRQMTN 386
Query: 192 SGVIDLVNGCQNI 204
+ +I + N+
Sbjct: 387 AALITIARNRPNM 399
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 267 ISDESIKHLAASCKSSLKNLRMDWCLNISDSSLSCILSQCRNLEALDI--GCCEEVTDAA 324
++D+ ++ +A S K+ K L + C S L+ I + CRNL+ LD+ ++V+
Sbjct: 117 VTDDCLELIAKSFKN-FKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHW 175
Query: 325 FQDLGEVELSLKVLKVNC--PKVTVVGIGNVLEKCASLEYIDV-RSCP 369
+ SL L ++C +V+ + ++ +C +L+ + + R+ P
Sbjct: 176 LSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVP 223
>pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
Length = 272
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 107/267 (40%), Gaps = 58/267 (21%)
Query: 34 VCKRWLHLQSTER--KKLSVRAGPHM-----------LRKIAARFSRLVELDLSQSVSRS 80
VCKRW L S E + L HM L I ++ S+L L L
Sbjct: 35 VCKRWYRLASDESLWQTLDEFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE------ 88
Query: 81 FYPGVTDSDLAVIADGFKS-LKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLTD 139
G+ SD V S L LNL C G ++ + ++ S L L+LS+C T+
Sbjct: 89 ---GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE 145
Query: 140 KGLS-AVAEGCQDLRSLHLAGC-KSVTDGTLQALSKNCRNLEELGLLGCTSISDSGVIDL 197
K + AVA + + L+L+G K++ L L + C NL L L SDS + L
Sbjct: 146 KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL------SDS--VML 197
Query: 198 VNGCQNIKFLDLNKCSNIGDNGIXXXXXXXXXXXXXXXXDCYKVGDKSILSLAKFCKNLE 257
N C +F LN ++ CY + +++L L + L+
Sbjct: 198 KNDCFQ-EFFQLNYLQHLS------------------LSRCYDIIPETLLELGEI-PTLK 237
Query: 258 TL-----IIGGCRDISDESIKHLAASC 279
TL + G + E++ HL +C
Sbjct: 238 TLQVFGIVPDGTLQLLKEALPHLQINC 264
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 62/127 (48%), Gaps = 4/127 (3%)
Query: 68 LVELDLSQSVSRSFYPGVTDSDLAVIADGFKSLKLLNLQNCKGITDAGIASIGSGLCSLQ 127
L EL V + +Y +D L D F+ ++ ++L N I + + I S LQ
Sbjct: 26 LPELLKVSGVCKRWYRLASDESLWQTLDEFR-VQHMDLSN-SVIEVSTLHGILSQCSKLQ 83
Query: 128 SLDLSYCRKLTDKGLSAVAEGCQDLRSLHLAGCKSVTDGTLQALSKNCRNLEELGLLGCT 187
+L L R L+D ++ +A+ +R L+L+GC ++ LQ L +C L+EL L C
Sbjct: 84 NLSLEGLR-LSDPIVNTLAKNSNLVR-LNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF 141
Query: 188 SISDSGV 194
++ V
Sbjct: 142 DFTEKHV 148
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 47/229 (20%), Positives = 92/229 (40%), Gaps = 38/229 (16%)
Query: 110 GITDAGIASIGSGLCSLQSLDLS-----YCRKLTDKGLSAVAEGCQDLRSLHLAGCKSVT 164
+ D + I S LC + L +S + R +D+ L + + R H+ SV
Sbjct: 11 SLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL---WQTLDEFRVQHMDLSNSVI 67
Query: 165 D-GTLQALSKNCRNLEELGLLGCTSISDSGVIDLVNGCQNIKFLDLNKCSNIGDNGIXXX 223
+ TL + C L+ L L G +SD +++ + N+ L+L+ CS + +
Sbjct: 68 EVSTLHGILSQCSKLQNLSLEGL-RLSDP-IVNTLAKNSNLVRLNLSGCSGFSEFALQ-- 123
Query: 224 XXXXXXXXXXXXXDCYKVGDKSILSLAKFCKNLETLIIGGCRDISDESIKHLAASCKSSL 283
+L C L+ L + C D +++ ++ A ++
Sbjct: 124 ------------------------TLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI 159
Query: 284 KNLRMD-WCLNISDSSLSCILSQCRNLEALDIGCCEEVTDAAFQDLGEV 331
L + + N+ S LS ++ +C NL LD+ + + FQ+ ++
Sbjct: 160 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQL 208
>pdb|3OGK|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGL|B Chain B, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|D Chain D, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|F Chain F, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|H Chain H, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|J Chain J, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|L Chain L, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|N Chain N, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|P Chain P, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGM|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
Length = 592
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 84/186 (45%), Gaps = 18/186 (9%)
Query: 12 DDELRSILSRLEDDKDKERFGLVCKRWLHLQSTERKKLSV----RAGPHMLRKIAARFSR 67
DD + +++ + D KD++ LVC+RW + S R+ +++ A P +++ RF
Sbjct: 18 DDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPD---RLSRRFPN 74
Query: 68 LVELDLSQSVSRSFY---P----GVTDSDLAVIADGFKSLKLLNLQNCKGITDAGIASIG 120
L L L + + P G + I++ + LK ++ + ++D + +
Sbjct: 75 LRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMI-VSDLDLDRLA 133
Query: 121 SGLC-SLQSLDLSYCRKLTDKGLSAVAEGCQDLRSLHLAGCK-SVTDGT-LQALSKNCRN 177
L++L L C T GL ++ C+ +++L + S DG L L+++ +
Sbjct: 134 KARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTS 193
Query: 178 LEELGL 183
LE L
Sbjct: 194 LEVLNF 199
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 65/136 (47%), Gaps = 10/136 (7%)
Query: 85 VTDSDLAVIADGFKSLKLLNLQNCKGITDAGIASIGS---GLCSLQSLDLSYCRKLTD-- 139
V+ L +A G + L+ + + IT+ + SIG+ LC + + L ++TD
Sbjct: 365 VSQRGLIALAQGCQELEYMAVY-VSDITNESLESIGTYLKNLCDFRLVLLDREERITDLP 423
Query: 140 --KGLSAVAEGCQDLRSLHLAGCKS-VTDGTLQALSKNCRNLEELGLLGCTSISDSGVID 196
G+ ++ GC+ LR + +TD L + + N+ + LLG SD G+++
Sbjct: 424 LDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWM-LLGYVGESDEGLME 482
Query: 197 LVNGCQNIKFLDLNKC 212
GC N++ L++ C
Sbjct: 483 FSRGCPNLQKLEMRGC 498
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 96/217 (44%), Gaps = 37/217 (17%)
Query: 85 VTDSDLAVIADGFKSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLTDKGLSA 144
+ D L V+A K LK L ++ +G + G+ GL S +GL A
Sbjct: 329 IGDRGLEVLAQYCKQLKRLRIE--RGADEQGMED-EEGLVS-------------QRGLIA 372
Query: 145 VAEGCQDLRSLHLAGCKSVTDGTLQALSKNCRNLEELGLL------GCTSIS-DSGVIDL 197
+A+GCQ+L + + +T+ +L+++ +NL + L+ T + D+GV L
Sbjct: 373 LAQGCQELEYMAVY-VSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSL 431
Query: 198 VNGCQNIK----FLDLNKCSNIGDNGIXXXXXXXXXXXXXXXXDCYKVGDKSILSLAKFC 253
+ GC+ ++ +L +++G + I + D+ ++ ++ C
Sbjct: 432 LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGE----SDEGLMEFSRGC 487
Query: 254 KNLETLIIGGCRDISDESIKHLAASCKSSLKNLRMDW 290
NL+ L + GC S+ +I A+ + L +LR W
Sbjct: 488 PNLQKLEMRGC-CFSERAI----AAAVTKLPSLRYLW 519
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 5/104 (4%)
Query: 267 ISDESIKHLAASCKSSLKNLRMDWCLNISDSSLSCILSQCRNLEAL--DIGCCEEVTDAA 324
+SD + LA + L+ L++D C + L I++ CR ++ L + E
Sbjct: 124 VSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKW 183
Query: 325 FQDLGEVELSLKVLK---VNCPKVTVVGIGNVLEKCASLEYIDV 365
+L + SL+VL K++ + + C SL + V
Sbjct: 184 LHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKV 227
>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|E Chain E, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|G Chain G, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|I Chain I, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|K Chain K, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|M Chain M, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|O Chain O, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|2ASS|B Chain B, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
pdb|2AST|B Chain B, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A P27
Peptide
Length = 336
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 76/167 (45%), Gaps = 21/167 (12%)
Query: 34 VCKRWLHLQSTERKKLSVR-AGPHMLRKIAARFSRLVELDLSQSV-----SRSFYPGVTD 87
VCKRW L S E ++ G ++ + R LSQ V RSF D
Sbjct: 35 VCKRWYRLASDESLWQTLDLTGKNLHPDVTGRL-------LSQGVIAFRCPRSF----MD 83
Query: 88 SDLAVIADGFKSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLTDKGLSAVAE 147
LA F+ ++ ++L N I + + I S LQ+L L R L+D ++ +A+
Sbjct: 84 QPLAEHFSPFR-VQHMDLSN-SVIEVSTLHGILSQCSKLQNLSLEGLR-LSDPIVNTLAK 140
Query: 148 GCQDLRSLHLAGCKSVTDGTLQALSKNCRNLEELGLLGCTSISDSGV 194
+R L+L+GC ++ LQ L +C L+EL L C ++ V
Sbjct: 141 NSNLVR-LNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHV 186
Score = 35.0 bits (79), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 79/199 (39%), Gaps = 33/199 (16%)
Query: 135 RKLTDKGLSAVAEGCQDLRSLHLAGCKSVTD-GTLQALSKNCRNLEELGLLGCTSISDSG 193
R D+ L AE R H+ SV + TL + C L+ L L G +SD
Sbjct: 79 RSFMDQPL---AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL-RLSDP- 133
Query: 194 VIDLVNGCQNIKFLDLNKCSNIGDNGIXXXXXXXXXXXXXXXXDCYKVGDKSILSLAKFC 253
+++ + N+ L+L+ CS + + +L C
Sbjct: 134 IVNTLAKNSNLVRLNLSGCSGFSEFALQ--------------------------TLLSSC 167
Query: 254 KNLETLIIGGCRDISDESIKHLAASCKSSLKNLRMD-WCLNISDSSLSCILSQCRNLEAL 312
L+ L + C D +++ ++ A ++ L + + N+ S LS ++ +C NL L
Sbjct: 168 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 227
Query: 313 DIGCCEEVTDAAFQDLGEV 331
D+ + + FQ+ ++
Sbjct: 228 DLSDSVMLKNDCFQEFFQL 246
>pdb|3DZE|A Chain A, Crystal Structure Of Bovine Coupling Factor B Bound With
Cadmium
pdb|3E3Z|A Chain A, Crystal Structure Of Bovine Coupling Factor B Bound With
Phenylarsine Oxide
pdb|3E4G|A Chain A, Crystal Structure Of Bovine Coupling Factor B, G28e Mutant
Length = 176
Score = 35.4 bits (80), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 147 EGCQDLRSLHLAGCKSVTDGTLQALSKNCRNLE----ELGLLGCTSISDSGVIDLVNGCQ 202
EG Q + + L C + DG L+ LS+ NL+ E+ ++ C +++D G+I L + +
Sbjct: 82 EGLQYVEKIRLCKCHYIEDGCLERLSQ-LENLQKSMLEMEIISCGNVTDKGIIAL-HHFR 139
Query: 203 NIKFLDLNKCSNIGD 217
N+K+L L+ + +
Sbjct: 140 NLKYLFLSDLPGVKE 154
>pdb|3E2J|A Chain A, Crystal Structure Of Bovine Coupling Factor B
pdb|3E2J|B Chain B, Crystal Structure Of Bovine Coupling Factor B
pdb|3E2J|C Chain C, Crystal Structure Of Bovine Coupling Factor B
pdb|3E2J|D Chain D, Crystal Structure Of Bovine Coupling Factor B
Length = 176
Score = 35.4 bits (80), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 147 EGCQDLRSLHLAGCKSVTDGTLQALSKNCRNLE----ELGLLGCTSISDSGVIDLVNGCQ 202
EG Q + + L C + DG L+ LS+ NL+ E+ ++ C +++D G+I L + +
Sbjct: 82 EGLQYVEKIRLCKCHYIEDGCLERLSQ-LENLQKSMLEMEIISCGNVTDKGIIAL-HHFR 139
Query: 203 NIKFLDLNKCSNIGD 217
N+K+L L+ + +
Sbjct: 140 NLKYLFLSDLPGVKE 154
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 35.4 bits (80), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 17/124 (13%)
Query: 100 LKLLNLQNCKGITD--AGIASIGS-----GLCSLQSLDLSYCRKLTDKGLSAVAEGCQDL 152
L+ L+++ C +T+ +AS + GL +LQSL L + + L A Q+L
Sbjct: 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT---GIRSLPASIANLQNL 208
Query: 153 RSLHLAGCK-SVTDGTLQALSKNCRNLEELGLLGCTSISDSGVIDLVNGCQNIKFLDLNK 211
+SL + S + L K LEEL L GCT++ + I G +K L L
Sbjct: 209 KSLKIRNSPLSALGPAIHHLPK----LEELDLRGCTALRNYPPI--FGGRAPLKRLILKD 262
Query: 212 CSNI 215
CSN+
Sbjct: 263 CSNL 266
>pdb|1BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase
Bifunctional Enzyme Complexed With Atp-G-S And Phosphate
Length = 469
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 267 ISDESIKHLAASCKSSLKNLRMDWCLNISDSSLSCILSQCRNLEALDIGCCEEVTDAAFQ 326
ISD++IK L + ++ + +LS Q + L +D G CEE+T Q
Sbjct: 289 ISDQNIKDLKVFTSQMKRTIQ-------TAEALSVPYEQFKVLNEIDAGVCEEMTYEEIQ 341
Query: 327 DLGEVELSLK 336
D +E +L+
Sbjct: 342 DHYPLEFALR 351
>pdb|2BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase H256a
Mutant With F6p In Phosphatase Active Site
pdb|2BIF|B Chain B, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase H256a
Mutant With F6p In Phosphatase Active Site
Length = 469
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 267 ISDESIKHLAASCKSSLKNLRMDWCLNISDSSLSCILSQCRNLEALDIGCCEEVTDAAFQ 326
ISD++IK L + ++ + +LS Q + L +D G CEE+T Q
Sbjct: 289 ISDQNIKDLKVFTSQMKRTIQ-------TAEALSVPYEQFKVLNEIDAGVCEEMTYEEIQ 341
Query: 327 DLGEVELSLK 336
D +E +L+
Sbjct: 342 DHYPLEFALR 351
>pdb|3BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase Empty
6-Pf-2k Active Site
Length = 468
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 267 ISDESIKHLAASCKSSLKNLRMDWCLNISDSSLSCILSQCRNLEALDIGCCEEVTDAAFQ 326
ISD++IK L + ++ + +LS Q + L +D G CEE+T Q
Sbjct: 288 ISDQNIKDLKVFTSQMKRTIQ-------TAEALSVPYEQFKVLNEIDAGVCEEMTYEEIQ 340
Query: 327 DLGEVELSLK 336
D +E +L+
Sbjct: 341 DHYPLEFALR 350
>pdb|2JE0|A Chain A, Crystal Structure Of Pp32
pdb|2JE0|B Chain B, Crystal Structure Of Pp32
pdb|2JE0|C Chain C, Crystal Structure Of Pp32
pdb|2JE0|D Chain D, Crystal Structure Of Pp32
pdb|2JE0|E Chain E, Crystal Structure Of Pp32
pdb|2JE0|F Chain F, Crystal Structure Of Pp32
pdb|2JE1|A Chain A, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|B Chain B, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|C Chain C, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|D Chain D, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
Length = 149
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 9/104 (8%)
Query: 90 LAVIADGFKSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLTDKGLSAVAEGC 149
L + D F+ L+ L+ N G+ SI + + L GL +AE C
Sbjct: 34 LEGLTDEFEELEFLSTINV------GLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKC 87
Query: 150 QDLRSLHLAGCKSVTDGTLQALSKNCRNLEELGLLGC--TSISD 191
+L L+L+G K T++ L K NL+ L L C T+++D
Sbjct: 88 PNLTHLNLSGNKIKDLSTIEPLKK-LENLKSLDLFNCEVTNLND 130
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 166 GTLQALSKNCRNLEELGLLGCTSISDSGVIDLVNGCQNIKFLDLNKC--SNIGD 217
G L+ L++ C NL L L G I D I+ + +N+K LDL C +N+ D
Sbjct: 78 GGLEVLAEKCPNLTHLNLSG-NKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130
>pdb|2JQD|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of Lanp
Length = 169
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 166 GTLQALSKNCRNLEELGLLGCTSISDSGVIDLVNGCQNIKFLDLNKC 212
G L+ L++ C NL+ L L G I D I+ + +N+K LDL C
Sbjct: 83 GDLEVLAEKCPNLKHLNLSG-NKIKDLSTIEPLKKLENLKSLDLFNC 128
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 7/94 (7%)
Query: 93 IADGFKSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLTDKGLSAVAEGCQDL 152
+ D F+ L+ L+ N G+ SI + + L L +AE C +L
Sbjct: 42 LTDEFEELEFLSTINV------GLTSISNLPKLNKLKKLELSENRISGDLEVLAEKCPNL 95
Query: 153 RSLHLAGCKSVTDGTLQALSKNCRNLEELGLLGC 186
+ L+L+G K T++ L K NL+ L L C
Sbjct: 96 KHLNLSGNKIKDLSTIEPLKK-LENLKSLDLFNC 128
>pdb|2AXN|A Chain A, Crystal Structure Of The Human Inducible Form 6-
Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase
pdb|2DWO|A Chain A, Pfkfb3 In Complex With Adp And Pep
pdb|2DWP|A Chain A, A Pseudo Substrate Complex Of 6-Phosphofructo-2-Kinase Of
Pfkfb
pdb|2I1V|B Chain B, Crystal Structure Of Pfkfb3 In Complex With Adp And
Fructose-2,6-Bisphosphate
pdb|3QPU|A Chain A, Pfkfb3 In Complex With Ppi
pdb|3QPV|A Chain A, Pfkfb3 Trapped In A Phospho-Enzyme Intermediate State
pdb|3QPW|A Chain A, Pfkfb3 In Complex With Aluminum Tetrafluoride
Length = 520
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 10/85 (11%)
Query: 261 IGGCRDISDESIKHLAASCK----SSLKNLRMDWCLNISDS-----SLSCILSQCRNLEA 311
IGG +S K +A K +LK+LR+ W + + +L Q + L
Sbjct: 265 IGGDSGLSSRGKKFASALSKFVEEQNLKDLRV-WTSQLKSTIQTAEALRLPYEQWKALNE 323
Query: 312 LDIGCCEEVTDAAFQDLGEVELSLK 336
+D G CEE+T +D E +L+
Sbjct: 324 IDAGVCEELTYEEIRDTYPEEYALR 348
>pdb|1DBW|A Chain A, Crystal Structure Of Fixj-N
pdb|1DBW|B Chain B, Crystal Structure Of Fixj-N
pdb|1DCK|A Chain A, Structure Of Unphosphorylated Fixj-N Complexed With Mn2+
pdb|1DCK|B Chain B, Structure Of Unphosphorylated Fixj-N Complexed With Mn2+
pdb|1DCM|A Chain A, Structure Of Unphosphorylated Fixj-N With An Atypical
Conformer (Monomer A)
pdb|1DCM|B Chain B, Structure Of Unphosphorylated Fixj-N With An Atypical
Conformer (Monomer A)
Length = 126
Score = 28.1 bits (61), Expect = 8.6, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 320 VTDAAFQDLGEVEL--SLKVLKVNCPKVTVVGIGNV 353
VTD D+ VEL +L LK+N P + + G G+V
Sbjct: 52 VTDLRMPDMSGVELLRNLGDLKINIPSIVITGHGDV 87
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,199,650
Number of Sequences: 62578
Number of extensions: 364256
Number of successful extensions: 888
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 848
Number of HSP's gapped (non-prelim): 42
length of query: 402
length of database: 14,973,337
effective HSP length: 101
effective length of query: 301
effective length of database: 8,652,959
effective search space: 2604540659
effective search space used: 2604540659
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)