Query 015721
Match_columns 402
No_of_seqs 255 out of 3145
Neff 11.4
Searched_HMMs 29240
Date Mon Mar 25 17:31:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015721.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015721hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p1m_B Transport inhibitor res 100.0 1.3E-37 4.3E-42 296.5 35.5 385 1-396 1-518 (594)
2 3ogk_B Coronatine-insensitive 100.0 3.2E-36 1.1E-40 286.6 33.5 385 8-397 14-526 (592)
3 2ast_B S-phase kinase-associat 100.0 9.6E-30 3.3E-34 224.7 23.4 300 4-347 6-307 (336)
4 2p1m_B Transport inhibitor res 100.0 2E-26 7E-31 219.2 29.1 119 92-212 99-221 (594)
5 3ogk_B Coronatine-insensitive 100.0 2E-25 6.8E-30 212.3 32.7 326 56-392 154-546 (592)
6 1z7x_W Ribonuclease inhibitor; 99.9 4E-22 1.4E-26 183.7 30.8 321 58-396 48-410 (461)
7 1z7x_W Ribonuclease inhibitor; 99.9 1.5E-20 5E-25 173.2 33.2 326 57-396 72-439 (461)
8 2ast_B S-phase kinase-associat 99.9 8.8E-20 3E-24 160.8 21.7 250 99-361 48-299 (336)
9 4fmz_A Internalin; leucine ric 99.8 1.5E-18 5E-23 153.6 21.8 283 63-396 63-345 (347)
10 4fmz_A Internalin; leucine ric 99.8 1.3E-18 4.3E-23 154.1 21.3 283 63-396 41-323 (347)
11 2ca6_A RAN GTPase-activating p 99.8 3.6E-17 1.2E-21 146.8 24.0 215 95-316 29-283 (386)
12 2ca6_A RAN GTPase-activating p 99.8 1E-16 3.4E-21 143.9 23.6 267 59-340 25-337 (386)
13 1o6v_A Internalin A; bacterial 99.7 2.9E-16 9.9E-21 144.4 19.9 285 62-396 64-365 (466)
14 1o6v_A Internalin A; bacterial 99.7 1.2E-16 4.1E-21 147.0 16.5 284 62-396 86-387 (466)
15 3v47_A TOLL-like receptor 5B a 99.7 3.3E-18 1.1E-22 157.2 2.7 307 66-396 30-407 (455)
16 3o6n_A APL1; leucine-rich repe 99.7 3.5E-17 1.2E-21 147.1 4.3 125 254-395 226-350 (390)
17 2id5_A Lingo-1, leucine rich r 99.7 7.6E-18 2.6E-22 155.7 -0.3 300 66-395 32-331 (477)
18 2z81_A CD282 antigen, TOLL-lik 99.6 5.1E-16 1.7E-20 146.1 11.1 108 281-395 310-421 (549)
19 3oja_B Anopheles plasmodium-re 99.6 8.9E-17 3E-21 152.3 5.3 288 60-395 69-356 (597)
20 3rgz_A Protein brassinosteroid 99.6 4.5E-18 1.5E-22 165.9 -4.0 39 198-238 219-257 (768)
21 3t6q_A CD180 antigen; protein- 99.6 1.4E-17 4.7E-22 158.7 -0.7 85 281-371 476-560 (606)
22 3goz_A Leucine-rich repeat-con 99.6 1.5E-13 5E-18 122.0 25.0 261 103-374 3-299 (362)
23 3v47_A TOLL-like receptor 5B a 99.6 6.3E-17 2.2E-21 148.6 2.2 284 98-396 30-383 (455)
24 3t6q_A CD180 antigen; protein- 99.6 1.1E-17 3.7E-22 159.4 -3.5 302 67-396 255-559 (606)
25 3o6n_A APL1; leucine-rich repe 99.6 9.5E-17 3.3E-21 144.3 2.7 289 64-397 43-331 (390)
26 2z81_A CD282 antigen, TOLL-lik 99.6 3.9E-16 1.3E-20 146.9 6.3 310 66-395 26-398 (549)
27 4ecn_A Leucine-rich repeat pro 99.6 1.6E-16 5.5E-21 154.5 3.3 166 61-238 443-629 (876)
28 3goz_A Leucine-rich repeat-con 99.6 2.6E-13 8.8E-18 120.4 23.6 243 98-348 22-299 (362)
29 3bz5_A Internalin-J, INLJ; leu 99.6 1.2E-15 4.1E-20 139.3 8.3 253 64-371 40-299 (457)
30 3rgz_A Protein brassinosteroid 99.6 4.3E-17 1.5E-21 159.0 -1.6 109 281-396 418-526 (768)
31 2z7x_B TOLL-like receptor 1, v 99.6 6E-17 2.1E-21 151.3 -1.0 59 333-396 421-480 (520)
32 2z7x_B TOLL-like receptor 1, v 99.6 9.7E-16 3.3E-20 143.2 7.1 107 281-396 348-456 (520)
33 3oja_B Anopheles plasmodium-re 99.6 3.4E-16 1.2E-20 148.4 3.2 289 64-397 49-337 (597)
34 4eco_A Uncharacterized protein 99.6 7.2E-17 2.5E-21 153.9 -2.7 312 61-396 201-578 (636)
35 4eco_A Uncharacterized protein 99.6 7.8E-17 2.7E-21 153.6 -2.6 298 64-396 247-599 (636)
36 2id5_A Lingo-1, leucine rich r 99.6 1.1E-16 3.8E-21 147.8 -2.2 291 61-379 51-341 (477)
37 4ecn_A Leucine-rich repeat pro 99.6 3.8E-16 1.3E-20 151.9 1.3 132 64-213 489-630 (876)
38 2z63_A TOLL-like receptor 4, v 99.6 8.2E-17 2.8E-21 152.3 -3.5 110 281-396 421-530 (570)
39 1xku_A Decorin; proteoglycan, 99.5 1.8E-15 6.2E-20 132.7 4.3 293 67-394 32-329 (330)
40 3vq2_A TLR4, TOLL-like recepto 99.5 9.9E-16 3.4E-20 145.9 2.7 110 281-396 350-460 (606)
41 2z63_A TOLL-like receptor 4, v 99.5 1.1E-16 3.9E-21 151.3 -4.3 112 62-186 48-159 (570)
42 3vq2_A TLR4, TOLL-like recepto 99.5 2.8E-16 9.7E-21 149.6 -3.1 272 95-396 282-557 (606)
43 1ziw_A TOLL-like receptor 3; i 99.5 5.3E-16 1.8E-20 149.8 -1.3 89 303-395 532-620 (680)
44 3a79_B TLR6, VLRB.59, TOLL-lik 99.5 7.7E-16 2.6E-20 145.1 -0.6 104 66-185 52-155 (562)
45 3o53_A Protein LRIM1, AGAP0063 99.5 1.8E-16 6.1E-21 138.1 -5.3 241 95-368 31-272 (317)
46 3j0a_A TOLL-like receptor 5; m 99.5 8.4E-17 2.9E-21 158.5 -9.4 160 65-238 23-184 (844)
47 3bz5_A Internalin-J, INLJ; leu 99.5 2.4E-14 8.3E-19 130.7 5.5 249 96-396 40-298 (457)
48 2ft3_A Biglycan; proteoglycan, 99.5 1.3E-15 4.5E-20 133.7 -3.3 290 67-395 34-331 (332)
49 1xku_A Decorin; proteoglycan, 99.5 8.2E-15 2.8E-19 128.5 1.1 271 66-368 52-329 (330)
50 1ziw_A TOLL-like receptor 3; i 99.4 4.6E-14 1.6E-18 136.3 5.6 136 253-395 221-364 (680)
51 3a79_B TLR6, VLRB.59, TOLL-lik 99.4 1.2E-13 4.2E-18 130.1 7.9 148 65-238 30-179 (562)
52 2z80_A TOLL-like receptor 2, v 99.4 6.1E-14 2.1E-18 124.1 5.5 257 98-373 52-316 (353)
53 4fcg_A Uncharacterized protein 99.4 3.5E-15 1.2E-19 130.3 -2.9 83 64-161 79-161 (328)
54 3e4g_A ATP synthase subunit S, 99.4 1.9E-13 6.4E-18 105.3 6.7 104 281-387 61-170 (176)
55 2z80_A TOLL-like receptor 2, v 99.4 7.7E-14 2.6E-18 123.4 4.2 259 123-397 51-314 (353)
56 3o53_A Protein LRIM1, AGAP0063 99.4 5E-14 1.7E-18 122.6 2.1 247 55-340 23-269 (317)
57 3j0a_A TOLL-like receptor 5; m 99.4 9.3E-15 3.2E-19 144.0 -3.0 43 352-395 420-462 (844)
58 4fcg_A Uncharacterized protein 99.4 3.1E-15 1.1E-19 130.7 -6.4 81 97-186 80-160 (328)
59 3g06_A SSPH2 (leucine-rich rep 99.4 3.1E-12 1.1E-16 120.4 13.0 111 67-212 41-151 (622)
60 2ft3_A Biglycan; proteoglycan, 99.4 7E-15 2.4E-19 129.0 -5.8 269 66-369 54-331 (332)
61 2z66_A Variable lymphocyte rec 99.4 1.2E-14 4.1E-19 126.0 -4.6 132 98-238 28-160 (306)
62 3zyi_A Leucine-rich repeat-con 99.4 1.7E-14 6E-19 132.0 -4.0 132 98-238 75-206 (452)
63 3oja_A Leucine-rich immune mol 99.3 1.4E-14 4.7E-19 133.5 -5.2 148 64-238 32-179 (487)
64 1wwl_A Monocyte differentiatio 99.3 8.3E-15 2.8E-19 127.2 -7.0 154 202-368 149-306 (312)
65 3zyj_A Leucine-rich repeat-con 99.3 2.7E-14 9.2E-19 130.3 -4.7 132 98-238 64-195 (440)
66 2z66_A Variable lymphocyte rec 99.3 2.5E-15 8.5E-20 130.4 -11.2 236 123-373 27-263 (306)
67 1h6u_A Internalin H; cell adhe 99.3 4.6E-12 1.6E-16 109.5 9.1 191 123-346 40-230 (308)
68 3oja_A Leucine-rich immune mol 99.3 2.2E-13 7.4E-18 125.5 0.3 238 96-366 32-270 (487)
69 1ogq_A PGIP-2, polygalacturona 99.3 3.2E-15 1.1E-19 129.8 -11.8 131 98-238 50-184 (313)
70 3e4g_A ATP synthase subunit S, 99.3 7.7E-12 2.6E-16 96.3 8.3 105 229-336 62-170 (176)
71 4g8a_A TOLL-like receptor 4; l 99.3 1.7E-13 5.7E-18 131.3 -1.3 88 303-395 490-578 (635)
72 1h6u_A Internalin H; cell adhe 99.3 1.4E-11 4.8E-16 106.5 10.9 189 97-318 40-228 (308)
73 1ogq_A PGIP-2, polygalacturona 99.3 2.9E-15 9.9E-20 130.1 -12.6 157 66-238 50-207 (313)
74 3g06_A SSPH2 (leucine-rich rep 99.3 2.9E-11 9.9E-16 113.9 13.0 242 66-377 61-302 (622)
75 3zyi_A Leucine-rich repeat-con 99.3 1.9E-13 6.4E-18 125.2 -2.3 233 124-375 75-307 (452)
76 3zyj_A Leucine-rich repeat-con 99.2 2.6E-13 8.9E-18 123.8 -2.5 234 124-376 64-297 (440)
77 3un9_A NLR family member X1; l 99.2 2.5E-10 8.7E-15 100.9 16.7 174 175-354 71-260 (372)
78 1ozn_A Reticulon 4 receptor; N 99.2 3.7E-12 1.3E-16 109.0 4.3 206 97-318 31-236 (285)
79 1wwl_A Monocyte differentiatio 99.2 5.8E-13 2E-17 115.6 -1.2 157 176-346 149-309 (312)
80 3un9_A NLR family member X1; l 99.2 6.9E-10 2.4E-14 98.1 17.1 172 98-276 72-260 (372)
81 4glp_A Monocyte differentiatio 99.2 1E-12 3.4E-17 114.0 -1.5 233 99-347 65-308 (310)
82 4glp_A Monocyte differentiatio 99.2 1.2E-12 4E-17 113.6 -1.1 136 124-264 64-207 (310)
83 1ozn_A Reticulon 4 receptor; N 99.2 2.6E-12 8.9E-17 110.0 0.8 180 123-316 31-210 (285)
84 1jl5_A Outer protein YOPM; leu 99.2 3.9E-11 1.3E-15 109.4 8.5 117 98-238 131-247 (454)
85 2ra8_A Uncharacterized protein 99.2 3.4E-10 1.2E-14 99.3 12.6 75 305-381 250-329 (362)
86 1jl5_A Outer protein YOPM; leu 99.1 3.7E-10 1.3E-14 103.0 10.9 244 98-396 111-369 (454)
87 1h6t_A Internalin B; cell adhe 99.1 3.5E-10 1.2E-14 96.8 8.9 169 148-345 44-212 (291)
88 1fs1_A SKP2 F-BOX, cyclin A/CD 99.0 2.5E-10 8.5E-15 69.5 4.1 42 4-46 6-47 (53)
89 1h6t_A Internalin B; cell adhe 99.0 8.7E-10 3E-14 94.4 8.8 167 175-369 45-211 (291)
90 1m9s_A Internalin B; cell inva 99.0 8E-10 2.7E-14 104.0 7.8 145 148-317 41-185 (605)
91 4ezg_A Putative uncharacterize 99.0 4.5E-10 1.5E-14 90.3 5.1 11 175-185 43-53 (197)
92 2z62_A TOLL-like receptor 4, v 99.0 2.8E-11 9.6E-16 103.0 -2.2 203 150-371 28-237 (276)
93 1m9s_A Internalin B; cell inva 99.0 1.3E-09 4.4E-14 102.6 8.5 168 175-370 42-209 (605)
94 4ezg_A Putative uncharacterize 98.9 1.2E-09 4.2E-14 87.7 6.4 104 202-318 44-147 (197)
95 2ra8_A Uncharacterized protein 98.9 1.1E-08 3.9E-13 89.6 12.9 164 196-369 166-341 (362)
96 2z62_A TOLL-like receptor 4, v 98.9 8.9E-11 3E-15 99.9 -0.6 132 98-238 28-159 (276)
97 2o6q_A Variable lymphocyte rec 98.9 4.6E-10 1.6E-14 95.1 3.3 36 281-318 181-216 (270)
98 3rfs_A Internalin B, repeat mo 98.9 1.2E-10 3.9E-15 98.9 -0.5 80 123-212 40-119 (272)
99 1p9a_G Platelet glycoprotein I 98.9 2.3E-10 7.9E-15 97.9 0.4 197 121-344 7-206 (290)
100 1io0_A Tropomodulin; LRR prote 98.9 1.5E-07 5E-12 74.5 16.2 126 246-374 28-166 (185)
101 3rfs_A Internalin B, repeat mo 98.9 1.1E-09 3.8E-14 92.8 4.2 129 96-238 39-167 (272)
102 2je0_A Acidic leucine-rich nuc 98.9 2.3E-09 8E-14 81.8 5.5 58 97-160 41-98 (149)
103 1p9a_G Platelet glycoprotein I 98.8 1.4E-09 4.9E-14 92.9 4.3 57 98-160 31-87 (290)
104 2o6q_A Variable lymphocyte rec 98.8 1.8E-09 6.3E-14 91.4 3.8 180 98-292 37-216 (270)
105 2je0_A Acidic leucine-rich nuc 98.8 1.9E-08 6.4E-13 76.7 9.0 132 97-236 16-148 (149)
106 2xwt_C Thyrotropin receptor; s 98.7 9.9E-11 3.4E-15 97.3 -6.5 13 383-395 225-237 (239)
107 2ell_A Acidic leucine-rich nuc 98.7 2.4E-09 8.1E-14 83.6 1.0 11 97-107 48-58 (168)
108 2ell_A Acidic leucine-rich nuc 98.7 5.4E-09 1.9E-13 81.5 1.6 11 98-108 24-34 (168)
109 3m19_A Variable lymphocyte rec 98.6 1.5E-08 5.1E-13 84.7 4.3 155 98-264 35-189 (251)
110 2xwt_C Thyrotropin receptor; s 98.6 2.2E-10 7.5E-15 95.2 -7.1 199 150-370 31-238 (239)
111 3m19_A Variable lymphocyte rec 98.6 1.5E-08 5E-13 84.8 3.2 157 66-240 35-191 (251)
112 1xeu_A Internalin C; cellular 98.6 2.7E-08 9.3E-13 83.6 4.7 32 281-316 150-181 (263)
113 4g8a_A TOLL-like receptor 4; l 98.6 1.3E-09 4.4E-14 104.3 -4.6 276 63-373 303-582 (635)
114 1io0_A Tropomodulin; LRR prote 98.6 1.7E-06 5.8E-11 68.3 13.8 124 271-396 27-163 (185)
115 1xeu_A Internalin C; cellular 98.5 6.2E-08 2.1E-12 81.4 4.9 127 198-346 59-185 (263)
116 1dce_A Protein (RAB geranylger 98.5 4.8E-09 1.7E-13 98.0 -2.8 36 122-160 347-382 (567)
117 3cvr_A Invasion plasmid antige 98.4 5.4E-07 1.8E-11 83.9 7.6 133 65-238 58-190 (571)
118 1dce_A Protein (RAB geranylger 98.4 1.5E-09 5.2E-14 101.4 -9.6 125 254-390 441-566 (567)
119 1ds9_A Outer arm dynein; leuci 98.4 1E-07 3.5E-12 76.5 1.9 130 221-364 41-180 (198)
120 2v70_A SLIT-2, SLIT homolog 2 98.3 2.1E-07 7.3E-12 75.9 3.2 107 98-211 32-138 (220)
121 1a9n_A U2A', U2A'; complex (nu 98.3 1.7E-07 5.8E-12 73.6 2.2 11 253-263 139-149 (176)
122 3cvr_A Invasion plasmid antige 98.3 2.4E-06 8E-11 79.6 10.0 192 98-330 59-252 (571)
123 3e6j_A Variable lymphocyte rec 98.3 3.4E-07 1.2E-11 75.2 3.8 105 98-211 40-144 (229)
124 4ay9_X Follicle-stimulating ho 98.3 1.9E-09 6.6E-14 94.9 -10.5 225 66-316 30-255 (350)
125 2o6s_A Variable lymphocyte rec 98.3 5.9E-07 2E-11 72.6 4.2 106 98-211 28-133 (208)
126 2v9t_B SLIT homolog 2 protein 98.3 4.3E-07 1.5E-11 74.0 3.4 106 98-211 32-137 (220)
127 1a9n_A U2A', U2A'; complex (nu 98.2 3.1E-07 1.1E-11 72.0 1.5 133 226-370 17-152 (176)
128 2xot_A Amphoterin-induced prot 98.2 7.2E-07 2.5E-11 78.8 3.7 162 98-269 39-204 (361)
129 4ay9_X Follicle-stimulating ho 98.2 2.4E-09 8.2E-14 94.3 -12.8 224 124-367 30-255 (350)
130 3l2o_B F-box only protein 4; s 98.2 4.6E-07 1.6E-11 74.6 1.5 40 6-46 4-43 (312)
131 1pgv_A TMD-1, tropomodulin TMD 98.1 0.0002 6.8E-09 56.2 16.1 120 246-367 33-166 (197)
132 2o6s_A Variable lymphocyte rec 98.1 1.1E-06 3.7E-11 71.0 3.2 132 65-212 27-158 (208)
133 1ds9_A Outer arm dynein; leuci 98.1 3.6E-07 1.2E-11 73.2 0.1 59 173-238 45-103 (198)
134 3e6j_A Variable lymphocyte rec 98.1 5.7E-07 1.9E-11 73.8 0.9 132 228-372 40-173 (229)
135 2v9t_B SLIT homolog 2 protein 98.1 6.9E-07 2.4E-11 72.8 1.3 132 66-213 32-163 (220)
136 2v70_A SLIT-2, SLIT homolog 2 98.1 5.3E-07 1.8E-11 73.5 0.4 133 124-265 32-164 (220)
137 2xot_A Amphoterin-induced prot 98.1 2.3E-06 7.8E-11 75.5 4.1 164 66-246 39-207 (361)
138 2e31_A FBS1, F-box only protei 98.0 1.8E-06 6.1E-11 72.1 2.0 40 5-45 49-89 (297)
139 3sb4_A Hypothetical leucine ri 97.9 1.6E-06 5.3E-11 75.6 -0.7 226 123-367 24-306 (329)
140 1pgv_A TMD-1, tropomodulin TMD 97.8 0.00043 1.5E-08 54.3 12.4 123 270-394 31-167 (197)
141 1w8a_A SLIT protein; signaling 97.7 1.1E-05 3.6E-10 64.2 2.5 59 99-160 30-88 (192)
142 2wfh_A SLIT homolog 2 protein 97.7 6.4E-06 2.2E-10 65.5 0.9 117 253-378 30-146 (193)
143 3sb4_A Hypothetical leucine ri 97.7 3.6E-06 1.2E-10 73.3 -0.8 76 56-134 39-134 (329)
144 2o6r_A Variable lymphocyte rec 97.6 2.8E-05 9.5E-10 60.8 2.6 35 98-134 28-62 (177)
145 4b8c_D Glucose-repressible alc 97.6 8E-06 2.7E-10 78.8 -0.9 107 121-239 221-327 (727)
146 1w8a_A SLIT protein; signaling 97.5 9.6E-06 3.3E-10 64.4 -0.4 83 124-211 29-111 (192)
147 2wfh_A SLIT homolog 2 protein 97.5 2.5E-05 8.4E-10 62.1 1.9 13 199-211 99-111 (193)
148 3v7d_B Cell division control p 97.5 2.3E-05 7.8E-10 71.6 1.6 36 8-44 16-51 (464)
149 1p22_A F-BOX/WD-repeat protein 97.4 4.3E-05 1.5E-09 69.2 1.5 38 8-46 12-53 (435)
150 2o6r_A Variable lymphocyte rec 97.4 3.8E-05 1.3E-09 60.0 0.8 112 253-372 27-138 (177)
151 2ovr_B FBW7, F-BOX/WD repeat p 97.3 8.1E-05 2.8E-09 67.6 2.3 38 7-45 19-56 (445)
152 4b8c_D Glucose-repressible alc 97.3 3.2E-05 1.1E-09 74.7 -0.8 109 94-214 220-328 (727)
153 3rw6_A Nuclear RNA export fact 97.2 0.0011 3.6E-08 55.1 7.5 39 122-160 168-206 (267)
154 3rw6_A Nuclear RNA export fact 97.1 0.00089 3E-08 55.6 6.9 14 303-316 192-205 (267)
155 3g39_A Variable lymphocyte rec 96.9 0.00035 1.2E-08 54.0 2.5 82 98-185 30-111 (170)
156 3g39_A Variable lymphocyte rec 96.8 0.00022 7.5E-09 55.2 0.1 34 281-316 54-87 (170)
157 2r9u_A Variable lymphocyte rec 96.8 0.0007 2.4E-08 52.5 2.9 59 98-160 33-91 (174)
158 2r9u_A Variable lymphocyte rec 96.6 0.00036 1.2E-08 54.2 0.2 35 334-369 82-116 (174)
159 4fdw_A Leucine rich hypothetic 96.0 0.00029 9.9E-09 62.8 -3.9 256 65-367 112-379 (401)
160 2ifg_A High affinity nerve gro 95.1 0.0083 2.8E-07 52.3 2.1 61 121-185 28-89 (347)
161 2ifg_A High affinity nerve gro 94.9 0.0047 1.6E-07 53.9 0.0 92 281-378 31-123 (347)
162 4fdw_A Leucine rich hypothetic 94.7 0.006 2.1E-07 54.3 0.3 217 67-316 158-379 (401)
163 4fs7_A Uncharacterized protein 88.5 0.036 1.2E-06 49.2 -2.5 209 95-340 159-373 (394)
164 4gt6_A Cell surface protein; l 86.9 0.4 1.4E-05 42.4 3.3 123 95-237 262-387 (394)
165 4gt6_A Cell surface protein; l 74.8 3.1 0.0001 36.6 4.6 126 61-211 260-387 (394)
166 3rfe_A Platelet glycoprotein I 69.4 1.6 5.5E-05 31.4 1.2 40 334-374 32-71 (130)
167 4fs7_A Uncharacterized protein 66.4 0.63 2.1E-05 41.1 -1.8 119 96-233 274-393 (394)
168 2kwv_A RAD30 homolog B, DNA po 49.5 9.4 0.00032 21.2 1.7 17 7-23 21-37 (48)
169 3rfe_A Platelet glycoprotein I 48.7 11 0.00037 26.9 2.5 38 280-319 30-67 (130)
170 4h09_A Hypothetical leucine ri 47.6 6.1 0.00021 34.4 1.2 125 63-211 214-342 (379)
171 4h09_A Hypothetical leucine ri 39.0 13 0.00045 32.2 2.1 104 62-185 236-342 (379)
No 1
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=100.00 E-value=1.3e-37 Score=296.48 Aligned_cols=385 Identities=23% Similarity=0.422 Sum_probs=226.6
Q ss_pred CCcccccccCCHHHHHHHHccCCCcchhhHHHHhhHHHHHhhhhcccccccccC-hhHHHHHHHhcCcceEEeccCCcCC
Q 015721 1 MGSLCINEVLRDDELRSILSRLEDDKDKERFGLVCKRWLHLQSTERKKLSVRAG-PHMLRKIAARFSRLVELDLSQSVSR 79 (402)
Q Consensus 1 ~~~~~~~~~LP~eil~~If~~L~~~~~~~~~~~vcr~W~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~l~~L~l~~~~~~ 79 (402)
|+.|.+ +.||+||+.+||+||+..+|+.++++|||+|+++....+..+.+... ......+..+++++++|+++++...
T Consensus 1 ~~~d~~-~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~ 79 (594)
T 2p1m_B 1 MQKRIA-LSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHF 79 (594)
T ss_dssp ----------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGG
T ss_pred Ccccch-hhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccCHHHHHhhCCCceEEeccCCCch
Confidence 455554 56999999999999995589999999999999985544444333221 1112234445555555555543211
Q ss_pred C-------C-------------------------CCCCChhhHHHHHhhCCCCCEEEccCCCCCChhHHHHHHhcCCCCC
Q 015721 80 S-------F-------------------------YPGVTDSDLAVIADGFKSLKLLNLQNCKGITDAGIASIGSGLCSLQ 127 (402)
Q Consensus 80 ~-------~-------------------------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 127 (402)
. . ...+.+..+..+...+++|++|++.+|..++...+..+...+++|+
T Consensus 80 ~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~ 159 (594)
T 2p1m_B 80 ADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLK 159 (594)
T ss_dssp GGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCC
T ss_pred hhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCC
Confidence 0 0 1112333333333345555555555543344444444444444444
Q ss_pred eEecCCCC-----------------------------CcChHHHHHHHhcCccCcEEecCCCccCChHHHHHHHH-----
Q 015721 128 SLDLSYCR-----------------------------KLTDKGLSAVAEGCQDLRSLHLAGCKSVTDGTLQALSK----- 173 (402)
Q Consensus 128 ~L~l~~~~-----------------------------~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~----- 173 (402)
+|++++|. .++...+..+...+++|++|++.+|.... .++....
T Consensus 160 ~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~--~l~~~~~~~~~L 237 (594)
T 2p1m_B 160 ELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE--KLATLLQRAPQL 237 (594)
T ss_dssp EEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH--HHHHHHHHCTTC
T ss_pred EEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH--HHHHHHhcCCcc
Confidence 44444332 01112233333334444444444331100 0111111
Q ss_pred -------------------------------------------------hCCCCcEEecCCCCCCchHHHHHHHhcCCCC
Q 015721 174 -------------------------------------------------NCRNLEELGLLGCTSISDSGVIDLVNGCQNI 204 (402)
Q Consensus 174 -------------------------------------------------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 204 (402)
.+++|++|+++++. +++..+..++..+++|
T Consensus 238 ~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L 316 (594)
T 2p1m_B 238 EELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKL 316 (594)
T ss_dssp SEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTC
T ss_pred eEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCc
Confidence 22333333333332 3333334444445555
Q ss_pred CEEccCCCCCCCcccHHHHHhcCCCCCEEEe--------cCCCCCChHHHHHHHHhCCCCcEEEecCCCCCChHHHHHHH
Q 015721 205 KFLDLNKCSNIGDNGISSVSKSCSSLKTLKL--------LDCYKVGDKSILSLAKFCKNLETLIIGGCRDISDESIKHLA 276 (402)
Q Consensus 205 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l--------~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~ 276 (402)
++|+++++ +.+.++..+...+++|++|++ .++..+++.++..+...+++|+.|.+ ++..+++..+..++
T Consensus 317 ~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~-~~~~l~~~~~~~l~ 393 (594)
T 2p1m_B 317 QRLWVLDY--IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLY-FCRQMTNAALITIA 393 (594)
T ss_dssp CEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEE-EESCCCHHHHHHHH
T ss_pred CEEeCcCc--cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHH-hcCCcCHHHHHHHH
Confidence 55555543 333334444445666666666 23345555555555555677777754 34456666666666
Q ss_pred HHhcCCCcEEEcc-----CCCCCC----hHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhccCCCcEEEEeCCCCCH
Q 015721 277 ASCKSSLKNLRMD-----WCLNIS----DSSLSCILSQCRNLEALDIGCCEEVTDAAFQDLGEVELSLKVLKVNCPKVTV 347 (402)
Q Consensus 277 ~~~~~~L~~L~l~-----~~~~~~----~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 347 (402)
..+ ++|++|+++ +|..++ +.++..++..+++|+.|++++ .+++..+..+...+++|+.|+++++.+++
T Consensus 394 ~~~-~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~i~~ 470 (594)
T 2p1m_B 394 RNR-PNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAGDSD 470 (594)
T ss_dssp HHC-TTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCCSSH
T ss_pred hhC-CCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCCCcH
Confidence 566 889999888 455677 667777788899999999975 67888888888877799999998888998
Q ss_pred HHHHHHHHhCCCCCEEeccCCCCCCHhHHHhhccCCCCcceEecccccc
Q 015721 348 VGIGNVLEKCASLEYIDVRSCPHVTQASCEEAGLQFPQCCKVNFAGCLF 396 (402)
Q Consensus 348 ~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~p~l~~l~~~~~~~ 396 (402)
.++..+...+++|+.|++++|+. ++..+..+...+|+++.+++++|+.
T Consensus 471 ~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 471 LGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 88888888899999999999986 8888887877899999999999986
No 2
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=100.00 E-value=3.2e-36 Score=286.64 Aligned_cols=385 Identities=20% Similarity=0.384 Sum_probs=234.0
Q ss_pred ccCCHHHHHHHHccC-CCcchhhHHHHhhHHHHHhhhhcccccccccC-hhHHHHHHHhcCcceEEeccCCcCCC-----
Q 015721 8 EVLRDDELRSILSRL-EDDKDKERFGLVCKRWLHLQSTERKKLSVRAG-PHMLRKIAARFSRLVELDLSQSVSRS----- 80 (402)
Q Consensus 8 ~~LP~eil~~If~~L-~~~~~~~~~~~vcr~W~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~l~~L~l~~~~~~~----- 80 (402)
..||+|++.+||+|| + .+|+.++++|||+|+++....+..+.+... ......+..+++++++|+++++....
T Consensus 14 ~~LPdeil~~I~~~L~~-~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~ 92 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITD-PKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLI 92 (592)
T ss_dssp CCCGGGTHHHHHTTCCC-HHHHHHHTTSCHHHHHHHHHHCCEEEESCGGGSCHHHHHHHCTTCSEEEEECSCGGGGGTCS
T ss_pred CCCCHHHHHHHHHhcCC-HHHHHHHHHHhHHHHHhhhccccEEEEeeccccChHHHHHhCCCCeEEEecCCcchhhcccc
Confidence 469999999999999 6 699999999999999986555554443321 22345666778888888886643211
Q ss_pred --CCCCCChhhHHHHHhhCCCCCEEEccCCCCCChhHHHHHHhcCCC-CCeEecCCCCCcChHHHHHHHhcCccCcEEec
Q 015721 81 --FYPGVTDSDLAVIADGFKSLKLLNLQNCKGITDAGIASIGSGLCS-LQSLDLSYCRKLTDKGLSAVAEGCQDLRSLHL 157 (402)
Q Consensus 81 --~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 157 (402)
.+.......+..+...+++|++|+++++. +++..+..+...+++ |++|++++|..+...++..+...+++|++|++
T Consensus 93 ~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L 171 (592)
T 3ogk_B 93 PENWGGYVTPWVTEISNNLRQLKSVHFRRMI-VSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLM 171 (592)
T ss_dssp CTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEEC
T ss_pred cccccccchHHHHHHHhhCCCCCeEEeeccE-ecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEEC
Confidence 12223333444445556666666665542 444444444332333 55555544443333344444444444444444
Q ss_pred CCCcc------------------------------CChHHHHHHHHhCCCCcEEecCCCCCCc-----------------
Q 015721 158 AGCKS------------------------------VTDGTLQALSKNCRNLEELGLLGCTSIS----------------- 190 (402)
Q Consensus 158 ~~~~~------------------------------~~~~~~~~~~~~~~~L~~L~l~~~~~~~----------------- 190 (402)
.+|.. +....+..+..++++|+.|++.++....
T Consensus 172 ~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 172 EESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGG 251 (592)
T ss_dssp TTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEEC
T ss_pred ccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhccc
Confidence 44321 1122333444445555555444421100
Q ss_pred ------------------------------hHHHHHHHhcCCCCCEEccCCCC-----------------------CCCc
Q 015721 191 ------------------------------DSGVIDLVNGCQNIKFLDLNKCS-----------------------NIGD 217 (402)
Q Consensus 191 ------------------------------~~~~~~~~~~~~~L~~L~l~~~~-----------------------~~~~ 217 (402)
...++..+..+++|++|++++|. .+.+
T Consensus 252 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~ 331 (592)
T 3ogk_B 252 SLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGD 331 (592)
T ss_dssp BCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHH
T ss_pred ccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCH
Confidence 00011112223344444444433 1222
Q ss_pred ccHHHHHhcCCCCCEEEecC----------CCCCChHHHHHHHHhCCCCcEEEecCCCCCChHHHHHHHHHhcCCCcEEE
Q 015721 218 NGISSVSKSCSSLKTLKLLD----------CYKVGDKSILSLAKFCKNLETLIIGGCRDISDESIKHLAASCKSSLKNLR 287 (402)
Q Consensus 218 ~~~~~~~~~~~~L~~L~l~~----------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~ 287 (402)
..+..+...+++|++|++.+ +..+++.++..+...+++|++|++ ++..+++..+..+...+ ++|++|+
T Consensus 332 ~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~-~~L~~L~ 409 (592)
T 3ogk_B 332 RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNESLESIGTYL-KNLCDFR 409 (592)
T ss_dssp HHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHHHHHHHHHHC-CSCCEEE
T ss_pred HHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCccHHHHHHHHhhC-CCCcEEE
Confidence 22333444455566666653 455555555555555666666666 33455666666665555 6777777
Q ss_pred ccC---CCCCCh----HHHHHHHhcCCCCcEEeccCCC-CCChHHHHHHHhccCCCcEEEEeCCCCCHHHHHHHHHhCCC
Q 015721 288 MDW---CLNISD----SSLSCILSQCRNLEALDIGCCE-EVTDAAFQDLGEVELSLKVLKVNCPKVTVVGIGNVLEKCAS 359 (402)
Q Consensus 288 l~~---~~~~~~----~~l~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~ 359 (402)
+++ +..+++ +++..++..|++|++|++++|. .+++..+..+...+++|+.|+++++.+++.++..++..|++
T Consensus 410 l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~ 489 (592)
T 3ogk_B 410 LVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPN 489 (592)
T ss_dssp EEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTT
T ss_pred EeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcc
Confidence 752 334443 4566667778888888887654 47788888888888899999998888998888888889999
Q ss_pred CCEEeccCCCCCCHhHHHhhccCCCCcceEeccccccC
Q 015721 360 LEYIDVRSCPHVTQASCEEAGLQFPQCCKVNFAGCLFE 397 (402)
Q Consensus 360 L~~L~l~~c~~~~~~~~~~~~~~~p~l~~l~~~~~~~~ 397 (402)
|+.|++++|+ +++..+..+...+|+++.+++++|...
T Consensus 490 L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 490 LQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp CCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred cCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCcCC
Confidence 9999999998 788888888778999999999999843
No 3
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.97 E-value=9.6e-30 Score=224.66 Aligned_cols=300 Identities=22% Similarity=0.345 Sum_probs=189.1
Q ss_pred ccccccCCHHHHHHHHccCCCcchhhHHHHhhHHHHHhhhhcccccccccChhHHHHHHHhcCcceEEeccCCcCCCCCC
Q 015721 4 LCINEVLRDDELRSILSRLEDDKDKERFGLVCKRWLHLQSTERKKLSVRAGPHMLRKIAARFSRLVELDLSQSVSRSFYP 83 (402)
Q Consensus 4 ~~~~~~LP~eil~~If~~L~~~~~~~~~~~vcr~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~ 83 (402)
...+++||+|++.+||+||+ .+|+.++++|||+|+++...+. .++.++++++
T Consensus 6 ~~~~~~LP~eil~~If~~L~-~~d~~~~~~vc~~W~~~~~~~~--------------------~~~~l~l~~~------- 57 (336)
T 2ast_B 6 GVSWDSLPDELLLGIFSCLC-LPELLKVSGVCKRWYRLASDES--------------------LWQTLDLTGK------- 57 (336)
T ss_dssp -CCSSSSCHHHHHHHHTTSC-HHHHHHTTSSCHHHHHHHTCST--------------------TSSEEECTTC-------
T ss_pred cCChhhCCHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHhcCch--------------------hheeeccccc-------
Confidence 34567899999999999999 5899999999999999864321 2456777643
Q ss_pred CCChhhHHHHHhhCCCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCCCCcChHHHHHHHhcCccCcEEecCCCccC
Q 015721 84 GVTDSDLAVIADGFKSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLTDKGLSAVAEGCQDLRSLHLAGCKSV 163 (402)
Q Consensus 84 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 163 (402)
.+.+..+..+. .++++.|++.++. +..... . ...+++|++|+++++. +....++.....+++|++|+++++. +
T Consensus 58 ~~~~~~~~~~~--~~~l~~L~l~~n~-l~~~~~-~-~~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~~~~-l 130 (336)
T 2ast_B 58 NLHPDVTGRLL--SQGVIAFRCPRSF-MDQPLA-E-HFSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLR-L 130 (336)
T ss_dssp BCCHHHHHHHH--HTTCSEEECTTCE-ECSCCC-S-CCCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTCB-C
T ss_pred cCCHHHHHhhh--hccceEEEcCCcc-ccccch-h-hccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCcCcc-c
Confidence 22232222211 1677888777643 222111 1 1246778888887765 6665566777778888888887763 4
Q ss_pred ChHHHHHHHHhCCCCcEEecCCCCCCchHHHHHHHhcCCCCCEEccCCCCCCCcccHHHHHhcCC-CCCEEEecCCC-CC
Q 015721 164 TDGTLQALSKNCRNLEELGLLGCTSISDSGVIDLVNGCQNIKFLDLNKCSNIGDNGISSVSKSCS-SLKTLKLLDCY-KV 241 (402)
Q Consensus 164 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~-~~ 241 (402)
.+.....+ ..+++|++|++++|..+++..+...+..+++|++|++++|..+.+..+......++ +|++|+++++. .+
T Consensus 131 ~~~~~~~l-~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~ 209 (336)
T 2ast_B 131 SDPIVNTL-AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNL 209 (336)
T ss_dssp CHHHHHHH-TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGS
T ss_pred CHHHHHHH-hcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccC
Confidence 44333333 34777888888776566666666667777777777777764565555566666677 77777777664 45
Q ss_pred ChHHHHHHHHhCCCCcEEEecCCCCCChHHHHHHHHHhcCCCcEEEccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCC
Q 015721 242 GDKSILSLAKFCKNLETLIIGGCRDISDESIKHLAASCKSSLKNLRMDWCLNISDSSLSCILSQCRNLEALDIGCCEEVT 321 (402)
Q Consensus 242 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~ 321 (402)
++..++.....+++|+.|+++++..+++..+..+ ..+ ++|++|++++|..+++..+.. +..+++|+.|++++| ++
T Consensus 210 ~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l-~~l-~~L~~L~l~~~~~~~~~~~~~-l~~~~~L~~L~l~~~--i~ 284 (336)
T 2ast_B 210 QKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF-FQL-NYLQHLSLSRCYDIIPETLLE-LGEIPTLKTLQVFGI--VP 284 (336)
T ss_dssp CHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG-GGC-TTCCEEECTTCTTCCGGGGGG-GGGCTTCCEEECTTS--SC
T ss_pred CHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHH-hCC-CCCCEeeCCCCCCCCHHHHHH-HhcCCCCCEEeccCc--cC
Confidence 5555566666677777777777654554444433 222 677777777765555444422 456777777777765 55
Q ss_pred hHHHHHHHhccCCCcEEEEeCCCCCH
Q 015721 322 DAAFQDLGEVELSLKVLKVNCPKVTV 347 (402)
Q Consensus 322 ~~~~~~~~~~~~~L~~L~l~~~~~~~ 347 (402)
+..+..+.. +++.|+++++.++.
T Consensus 285 ~~~~~~l~~---~l~~L~l~~n~l~~ 307 (336)
T 2ast_B 285 DGTLQLLKE---ALPHLQINCSHFTT 307 (336)
T ss_dssp TTCHHHHHH---HSTTSEESCCCSCC
T ss_pred HHHHHHHHh---hCcceEEecccCcc
Confidence 555555543 23334455555543
No 4
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.96 E-value=2e-26 Score=219.22 Aligned_cols=119 Identities=27% Similarity=0.443 Sum_probs=63.0
Q ss_pred HHHhhCCCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCCCCcChHHHHHHHhcCccCcEEecCCCccCCh---HHH
Q 015721 92 VIADGFKSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLTDKGLSAVAEGCQDLRSLHLAGCKSVTD---GTL 168 (402)
Q Consensus 92 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~ 168 (402)
.+...+++|++|+++++. +++..+..+...+++|++|++.+|..++..+++.+..++++|++|++.+|. +.+ ..+
T Consensus 99 ~l~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l 176 (594)
T 2p1m_B 99 AMSSSYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWL 176 (594)
T ss_dssp HHHHHCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGG
T ss_pred HHHHhCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHH
Confidence 344456666666666654 555555555545666666666666445555555665566666666666553 111 112
Q ss_pred HHHHHhCCCCcEEecCCCC-CCchHHHHHHHhcCCCCCEEccCCC
Q 015721 169 QALSKNCRNLEELGLLGCT-SISDSGVIDLVNGCQNIKFLDLNKC 212 (402)
Q Consensus 169 ~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~ 212 (402)
..+...+++|++|+++++. .++...+..+...+++|++|++++|
T Consensus 177 ~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 177 SHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp GGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred HHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 2222234455555555432 2334444444455566666666554
No 5
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=2e-25 Score=212.28 Aligned_cols=326 Identities=18% Similarity=0.231 Sum_probs=239.4
Q ss_pred hHHHHHHHhcCcceEEeccCCcCCCCCCCCChhhHHHHHhhCCCCCEEEccCCCC--CChhHHHHHHhcCCCCCeEecCC
Q 015721 56 HMLRKIAARFSRLVELDLSQSVSRSFYPGVTDSDLAVIADGFKSLKLLNLQNCKG--ITDAGIASIGSGLCSLQSLDLSY 133 (402)
Q Consensus 56 ~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--~~~~~~~~~~~~~~~L~~L~l~~ 133 (402)
..+..+...+++|++|+++++.. .+.....+..+...+++|++|+++++.. +....+..+...+++|++|++++
T Consensus 154 ~~l~~~~~~~~~L~~L~L~~~~~----~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~ 229 (592)
T 3ogk_B 154 DGLLSIVTHCRKIKTLLMEESSF----SEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGD 229 (592)
T ss_dssp HHHHHHHHHCTTCSEEECTTCEE----ECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSS
T ss_pred HHHHHHHhhCCCCCEEECccccc----cCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccC
Confidence 34455556777777777776531 1222222444445566666666654331 22344455555566666666655
Q ss_pred CCC-----------------------------------------------cChHHHHHHHhcCccCcEEecCCCccCChH
Q 015721 134 CRK-----------------------------------------------LTDKGLSAVAEGCQDLRSLHLAGCKSVTDG 166 (402)
Q Consensus 134 ~~~-----------------------------------------------~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 166 (402)
+.. .....++.....+++|++|++++|. +...
T Consensus 230 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~ 308 (592)
T 3ogk_B 230 FEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETE 308 (592)
T ss_dssp CBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHH
T ss_pred ccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHH
Confidence 431 0112233444567788888888875 6666
Q ss_pred HHHHHHHhCCCCcEEecCCCCCCchHHHHHHHhcCCCCCEEccCC----------CCCCCcccHHHHHhcCCCCCEEEec
Q 015721 167 TLQALSKNCRNLEELGLLGCTSISDSGVIDLVNGCQNIKFLDLNK----------CSNIGDNGISSVSKSCSSLKTLKLL 236 (402)
Q Consensus 167 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~----------~~~~~~~~~~~~~~~~~~L~~L~l~ 236 (402)
.+..+...+++|++|++.+ .+.+.++..+...+++|++|++++ |..++..++..+...+++|++|.+.
T Consensus 309 ~~~~~~~~~~~L~~L~L~~--~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~ 386 (592)
T 3ogk_B 309 DHCTLIQKCPNLEVLETRN--VIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVY 386 (592)
T ss_dssp HHHHHHTTCTTCCEEEEEG--GGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEE
T ss_pred HHHHHHHhCcCCCEEeccC--ccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEee
Confidence 6666677899999999883 466777777888899999999995 7788887788888889999999994
Q ss_pred CCCCCChHHHHHHHHhCCCCcEEEecC---CCCCCh----HHHHHHHHHhcCCCcEEEccCCC-CCChHHHHHHHhcCCC
Q 015721 237 DCYKVGDKSILSLAKFCKNLETLIIGG---CRDISD----ESIKHLAASCKSSLKNLRMDWCL-NISDSSLSCILSQCRN 308 (402)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~L~~L~l~~---~~~~~~----~~~~~l~~~~~~~L~~L~l~~~~-~~~~~~l~~~l~~~~~ 308 (402)
+..+++..+..+...+++|+.|++++ ++.+++ ..+..+...+ ++|++|++++|. .+++..+..+...+++
T Consensus 387 -~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~-~~L~~L~L~~~~~~l~~~~~~~~~~~~~~ 464 (592)
T 3ogk_B 387 -VSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGC-KKLRRFAFYLRQGGLTDLGLSYIGQYSPN 464 (592)
T ss_dssp -ESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHC-TTCCEEEEECCGGGCCHHHHHHHHHSCTT
T ss_pred -cCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhC-CCCCEEEEecCCCCccHHHHHHHHHhCcc
Confidence 46788888888877799999999973 456664 4677776776 899999998764 3788888887788999
Q ss_pred CcEEeccCCCCCChHHHHHHHhccCCCcEEEEeCCCCCHHHHHHHHHhCCCCCEEeccCCCCCCHhHHHhhccCCCCcce
Q 015721 309 LEALDIGCCEEVTDAAFQDLGEVELSLKVLKVNCPKVTVVGIGNVLEKCASLEYIDVRSCPHVTQASCEEAGLQFPQCCK 388 (402)
Q Consensus 309 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~p~l~~ 388 (402)
|+.|++++|. +++.++..+...+++|+.|++..+.+++.++..++..+++|+.|++++|+ +++.+++.++..+|.+..
T Consensus 465 L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~~ 542 (592)
T 3ogk_B 465 VRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYWNI 542 (592)
T ss_dssp CCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTEEE
T ss_pred ceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc-CCHHHHHHHHHhCCCcEE
Confidence 9999999854 88888888888888999999966669988888888899999999999998 898999889888998765
Q ss_pred Eecc
Q 015721 389 VNFA 392 (402)
Q Consensus 389 l~~~ 392 (402)
..+.
T Consensus 543 ~~~~ 546 (592)
T 3ogk_B 543 ELIP 546 (592)
T ss_dssp EEEC
T ss_pred EEec
Confidence 4443
No 6
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.92 E-value=4e-22 Score=183.68 Aligned_cols=321 Identities=24% Similarity=0.348 Sum_probs=195.6
Q ss_pred HHHHHHhcCcceEEeccCCcCCCCCCCCChhhHHHHHhhCC----CCCEEEccCCCCCChhH---HHHHHhcCCCCCeEe
Q 015721 58 LRKIAARFSRLVELDLSQSVSRSFYPGVTDSDLAVIADGFK----SLKLLNLQNCKGITDAG---IASIGSGLCSLQSLD 130 (402)
Q Consensus 58 ~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~----~L~~L~l~~~~~~~~~~---~~~~~~~~~~L~~L~ 130 (402)
+......+++|++|+++++ .+.+.....+...++ +|++|+++++. +++.+ +......+++|++|+
T Consensus 48 l~~~l~~~~~L~~L~Ls~n-------~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~ 119 (461)
T 1z7x_W 48 ISSALRVNPALAELNLRSN-------ELGDVGVHCVLQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELH 119 (461)
T ss_dssp HHHHHHTCTTCCEEECTTC-------CCHHHHHHHHHHTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEE
T ss_pred HHHHHHhCCCcCEEeCCCC-------cCChHHHHHHHHHHhhCCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEE
Confidence 3445556677777777743 344444555555555 68888887764 55432 333345667788888
Q ss_pred cCCCCCcChHHHHHHHhc----CccCcEEecCCCccCChH---HHHHHHHhCCCCcEEecCCCCCCchHHHHHHHh----
Q 015721 131 LSYCRKLTDKGLSAVAEG----CQDLRSLHLAGCKSVTDG---TLQALSKNCRNLEELGLLGCTSISDSGVIDLVN---- 199 (402)
Q Consensus 131 l~~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---- 199 (402)
++++. +...++..+... .++|++|+++++. +... .+......+++|++|+++++ .+++.+...+..
T Consensus 120 Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~ 196 (461)
T 1z7x_W 120 LSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEPLASVLRAKPDFKELTVSNN-DINEAGVRVLCQGLKD 196 (461)
T ss_dssp CCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHHH
T ss_pred CCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHHHHHHHHhhCCCCCEEECcCC-CcchHHHHHHHHHHhc
Confidence 87765 655544444332 3468888887763 3332 23344445788888888774 455544433332
Q ss_pred cCCCCCEEccCCCCCCCccc---HHHHHhcCCCCCEEEecCCCCCChHHHHHHHH----hCCCCcEEEecCCCCCChHHH
Q 015721 200 GCQNIKFLDLNKCSNIGDNG---ISSVSKSCSSLKTLKLLDCYKVGDKSILSLAK----FCKNLETLIIGGCRDISDESI 272 (402)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~~ 272 (402)
..++|++|+++++. +...+ +......+++|++|+++++ .+.+.+...+.. .+++|++|+++++ .+++...
T Consensus 197 ~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~ 273 (461)
T 1z7x_W 197 SPCQLEALKLESCG-VTSDNCRDLCGIVASKASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGC 273 (461)
T ss_dssp SCCCCCEEECTTSC-CBTTHHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHH
T ss_pred CCCCceEEEccCCC-CcHHHHHHHHHHHHhCCCccEEeccCC-cCChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHH
Confidence 34578888888754 33322 3444456788888888875 454444433332 3678888888776 5666554
Q ss_pred HHHHH---HhcCCCcEEEccCCCCCChHHHHHHHh----cCCCCcEEeccCCCCCChHHHHH---HHhccCCCcEEEEeC
Q 015721 273 KHLAA---SCKSSLKNLRMDWCLNISDSSLSCILS----QCRNLEALDIGCCEEVTDAAFQD---LGEVELSLKVLKVNC 342 (402)
Q Consensus 273 ~~l~~---~~~~~L~~L~l~~~~~~~~~~l~~~l~----~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~~L~~L~l~~ 342 (402)
..++. .+ ++|++|+++++ .+++.+...+.. ..++|++|++++|. +++..... ....+++|++|+++.
T Consensus 274 ~~l~~~l~~~-~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~ 350 (461)
T 1z7x_W 274 GDLCRVLRAK-ESLKELSLAGN-ELGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISN 350 (461)
T ss_dssp HHHHHHHHHC-TTCCEEECTTC-CCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCS
T ss_pred HHHHHHHhhC-CCcceEECCCC-CCchHHHHHHHHHhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccC
Confidence 44433 23 78888888877 555544433322 23688888888765 55444332 233445888888877
Q ss_pred CCCCHHHHHHHHHh----CCCCCEEeccCCCCCCHhHHHhh---ccCCCCcceEecccccc
Q 015721 343 PKVTVVGIGNVLEK----CASLEYIDVRSCPHVTQASCEEA---GLQFPQCCKVNFAGCLF 396 (402)
Q Consensus 343 ~~~~~~~l~~~~~~----~~~L~~L~l~~c~~~~~~~~~~~---~~~~p~l~~l~~~~~~~ 396 (402)
+.+++.+...+... .++|+.|++++| .+++.++..+ ....|+++.+++++|..
T Consensus 351 n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 351 NRLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNNCL 410 (461)
T ss_dssp SBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSSSC
T ss_pred CccccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCCCC
Confidence 78877766555432 668888988887 4666433332 23578888888888864
No 7
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.90 E-value=1.5e-20 Score=173.21 Aligned_cols=326 Identities=21% Similarity=0.344 Sum_probs=230.9
Q ss_pred HHHHHHHhcC----cceEEeccCCcCCCCCCCCChhhHHHHHhhCCCCCEEEccCCCCCChhHHHHHHhc----CCCCCe
Q 015721 57 MLRKIAARFS----RLVELDLSQSVSRSFYPGVTDSDLAVIADGFKSLKLLNLQNCKGITDAGIASIGSG----LCSLQS 128 (402)
Q Consensus 57 ~~~~~~~~~~----~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~----~~~L~~ 128 (402)
....+...++ +|++|+++++. ........+......+++|++|+++++. +.+.....+... .++|++
T Consensus 72 ~~~~l~~~l~~~~~~L~~L~L~~n~----i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~ 146 (461)
T 1z7x_W 72 GVHCVLQGLQTPSCKIQKLSLQNCC----LTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEK 146 (461)
T ss_dssp HHHHHHHTTCSTTCCCCEEECTTSC----CBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCE
T ss_pred HHHHHHHHHhhCCCceeEEEccCCC----CCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceE
Confidence 3445555566 69999999763 1222223444555678999999999865 776666655443 457999
Q ss_pred EecCCCCCcChHH---HHHHHhcCccCcEEecCCCccCChHHHHHHHH----hCCCCcEEecCCCCCCchHH---HHHHH
Q 015721 129 LDLSYCRKLTDKG---LSAVAEGCQDLRSLHLAGCKSVTDGTLQALSK----NCRNLEELGLLGCTSISDSG---VIDLV 198 (402)
Q Consensus 129 L~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~---~~~~~ 198 (402)
|++++|. ++..+ ++.....+++|++|+++++. +.+..+..+.. ..++|++|+++++ .++..+ +...+
T Consensus 147 L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l 223 (461)
T 1z7x_W 147 LQLEYCS-LSAASCEPLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESC-GVTSDNCRDLCGIV 223 (461)
T ss_dssp EECTTSC-CBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTS-CCBTTHHHHHHHHH
T ss_pred EECCCCC-CCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCC-CCcHHHHHHHHHHH
Confidence 9999986 65543 44556678999999999974 55544444433 3569999999985 455433 45667
Q ss_pred hcCCCCCEEccCCCCCCCcccHHHHH----hcCCCCCEEEecCCCCCChHH---HHHHHHhCCCCcEEEecCCCCCChHH
Q 015721 199 NGCQNIKFLDLNKCSNIGDNGISSVS----KSCSSLKTLKLLDCYKVGDKS---ILSLAKFCKNLETLIIGGCRDISDES 271 (402)
Q Consensus 199 ~~~~~L~~L~l~~~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~ 271 (402)
..+++|++|+++++ .+.+.++..+. ..+++|++|+++++ .++..+ +......+++|++|+++++ .+++..
T Consensus 224 ~~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~ 300 (461)
T 1z7x_W 224 ASKASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGN-ELGDEG 300 (461)
T ss_dssp HHCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTC-CCHHHH
T ss_pred HhCCCccEEeccCC-cCChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCC-CCchHH
Confidence 78899999999985 45554443333 24789999999986 566654 3444556899999999886 567666
Q ss_pred HHHHHHHhc---CCCcEEEccCCCCCChH---HHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhc----cCCCcEEEEe
Q 015721 272 IKHLAASCK---SSLKNLRMDWCLNISDS---SLSCILSQCRNLEALDIGCCEEVTDAAFQDLGEV----ELSLKVLKVN 341 (402)
Q Consensus 272 ~~~l~~~~~---~~L~~L~l~~~~~~~~~---~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~----~~~L~~L~l~ 341 (402)
...++.... ++|++|++++| .+++. .+...+..+++|+.|+++++ .+++.++..+... .++|++|+++
T Consensus 301 ~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~ 378 (461)
T 1z7x_W 301 ARLLCETLLEPGCQLESLWVKSC-SFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLA 378 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHhccCCccceeeEcCCC-CCchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECC
Confidence 666665542 59999999998 45543 35566788999999999986 5777777666543 4599999997
Q ss_pred CCCCCHHH---HHHHHHhCCCCCEEeccCCCCCCHhHHHhhccCCC----CcceEecccccc
Q 015721 342 CPKVTVVG---IGNVLEKCASLEYIDVRSCPHVTQASCEEAGLQFP----QCCKVNFAGCLF 396 (402)
Q Consensus 342 ~~~~~~~~---l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~p----~l~~l~~~~~~~ 396 (402)
.+.+++.+ +...+..+++|+.|++++| .+++.++..+...+| +++.+.+.++..
T Consensus 379 ~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N-~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~ 439 (461)
T 1z7x_W 379 DCDVSDSSCSSLAATLLANHSLRELDLSNN-CLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439 (461)
T ss_dssp TSCCCHHHHHHHHHHHHHCCCCCEEECCSS-SCCHHHHHHHHHHHTSTTCCCCEEECTTCCC
T ss_pred CCCCChhhHHHHHHHHHhCCCccEEECCCC-CCCHHHHHHHHHHhccCCcchhheeeccccc
Confidence 78888754 3445567999999999997 478887777765444 477887766543
No 8
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=8.8e-20 Score=160.76 Aligned_cols=250 Identities=18% Similarity=0.289 Sum_probs=147.0
Q ss_pred CCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCCCCcChHHHHHHHhcCccCcEEecCCCccCChHHHHHHHHhCCCC
Q 015721 99 SLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLTDKGLSAVAEGCQDLRSLHLAGCKSVTDGTLQALSKNCRNL 178 (402)
Q Consensus 99 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 178 (402)
.++.+++++.. +....+..+. .++++.|++.++. +..... . ...+++|++|+++++. +....++.....+++|
T Consensus 48 ~~~~l~l~~~~-~~~~~~~~~~--~~~l~~L~l~~n~-l~~~~~-~-~~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L 120 (336)
T 2ast_B 48 LWQTLDLTGKN-LHPDVTGRLL--SQGVIAFRCPRSF-MDQPLA-E-HFSPFRVQHMDLSNSV-IEVSTLHGILSQCSKL 120 (336)
T ss_dssp TSSEEECTTCB-CCHHHHHHHH--HTTCSEEECTTCE-ECSCCC-S-CCCCBCCCEEECTTCE-ECHHHHHHHHTTBCCC
T ss_pred hheeecccccc-CCHHHHHhhh--hccceEEEcCCcc-ccccch-h-hccCCCCCEEEccCCC-cCHHHHHHHHhhCCCC
Confidence 46777777643 4433332221 1677777776643 222111 1 2246777777777763 4444455666667777
Q ss_pred cEEecCCCCCCchHHHHHHHhcCCCCCEEccCCCCCCCcccHHHHHhcCCCCCEEEecCCCCCChHHHHHHHHhCC-CCc
Q 015721 179 EELGLLGCTSISDSGVIDLVNGCQNIKFLDLNKCSNIGDNGISSVSKSCSSLKTLKLLDCYKVGDKSILSLAKFCK-NLE 257 (402)
Q Consensus 179 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~L~ 257 (402)
++|+++++ .+++.. ...+..+++|++|++++|..+++..++.....+++|++|+++++..+++..+......++ +|+
T Consensus 121 ~~L~L~~~-~l~~~~-~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~ 198 (336)
T 2ast_B 121 QNLSLEGL-RLSDPI-VNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETIT 198 (336)
T ss_dssp SEEECTTC-BCCHHH-HHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCC
T ss_pred CEEeCcCc-ccCHHH-HHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCC
Confidence 77777764 344332 334455777777777776556555566666667777777777764566555556566677 777
Q ss_pred EEEecCCC-CCChHHHHHHHHHhcCCCcEEEccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhccCCCc
Q 015721 258 TLIIGGCR-DISDESIKHLAASCKSSLKNLRMDWCLNISDSSLSCILSQCRNLEALDIGCCEEVTDAAFQDLGEVELSLK 336 (402)
Q Consensus 258 ~L~l~~~~-~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 336 (402)
+|+++++. .+++..+......+ ++|++|+++++..+++..+.. +..+++|++|++++|..+++..+..+.. +++|+
T Consensus 199 ~L~l~~~~~~~~~~~l~~~~~~~-~~L~~L~l~~~~~l~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~l~~-~~~L~ 275 (336)
T 2ast_B 199 QLNLSGYRKNLQKSDLSTLVRRC-PNLVHLDLSDSVMLKNDCFQE-FFQLNYLQHLSLSRCYDIIPETLLELGE-IPTLK 275 (336)
T ss_dssp EEECCSCGGGSCHHHHHHHHHHC-TTCSEEECTTCTTCCGGGGGG-GGGCTTCCEEECTTCTTCCGGGGGGGGG-CTTCC
T ss_pred EEEeCCCcccCCHHHHHHHHhhC-CCCCEEeCCCCCcCCHHHHHH-HhCCCCCCEeeCCCCCCCCHHHHHHHhc-CCCCC
Confidence 77777664 45555555555554 677777777764455444433 4566777777777766565555444433 44777
Q ss_pred EEEEeCCCCCHHHHHHHHHhCCCCC
Q 015721 337 VLKVNCPKVTVVGIGNVLEKCASLE 361 (402)
Q Consensus 337 ~L~l~~~~~~~~~l~~~~~~~~~L~ 361 (402)
.|++..+ ++..++..+...++.|+
T Consensus 276 ~L~l~~~-i~~~~~~~l~~~l~~L~ 299 (336)
T 2ast_B 276 TLQVFGI-VPDGTLQLLKEALPHLQ 299 (336)
T ss_dssp EEECTTS-SCTTCHHHHHHHSTTSE
T ss_pred EEeccCc-cCHHHHHHHHhhCcceE
Confidence 7777322 55555555554555554
No 9
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.82 E-value=1.5e-18 Score=153.64 Aligned_cols=283 Identities=18% Similarity=0.160 Sum_probs=171.2
Q ss_pred HhcCcceEEeccCCcCCCCCCCCChhhHHHHHhhCCCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCCCCcChHHH
Q 015721 63 ARFSRLVELDLSQSVSRSFYPGVTDSDLAVIADGFKSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLTDKGL 142 (402)
Q Consensus 63 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 142 (402)
..+++|++|+++++.. ..+.. ...+++|++|+++++. +... .. ...+++|++|+++++. +....
T Consensus 63 ~~~~~L~~L~l~~n~i----~~~~~------~~~l~~L~~L~L~~n~-i~~~--~~-~~~l~~L~~L~l~~n~-i~~~~- 126 (347)
T 4fmz_A 63 EYLTNLEYLNLNGNQI----TDISP------LSNLVKLTNLYIGTNK-ITDI--SA-LQNLTNLRELYLNEDN-ISDIS- 126 (347)
T ss_dssp GGCTTCCEEECCSSCC----CCCGG------GTTCTTCCEEECCSSC-CCCC--GG-GTTCTTCSEEECTTSC-CCCCG-
T ss_pred hhcCCccEEEccCCcc----ccchh------hhcCCcCCEEEccCCc-ccCc--hH-HcCCCcCCEEECcCCc-ccCch-
Confidence 4566777777776532 12111 2456777777777653 3332 22 2456777777777655 33211
Q ss_pred HHHHhcCccCcEEecCCCccCChHHHHHHHHhCCCCcEEecCCCCCCchHHHHHHHhcCCCCCEEccCCCCCCCcccHHH
Q 015721 143 SAVAEGCQDLRSLHLAGCKSVTDGTLQALSKNCRNLEELGLLGCTSISDSGVIDLVNGCQNIKFLDLNKCSNIGDNGISS 222 (402)
Q Consensus 143 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 222 (402)
. ...+++|++|+++++...... .. ...+++|++|++.++. +.... . +..+++|++|+++++.......
T Consensus 127 -~-~~~l~~L~~L~l~~n~~~~~~--~~-~~~l~~L~~L~l~~~~-~~~~~--~-~~~l~~L~~L~l~~n~l~~~~~--- 194 (347)
T 4fmz_A 127 -P-LANLTKMYSLNLGANHNLSDL--SP-LSNMTGLNYLTVTESK-VKDVT--P-IANLTDLYSLSLNYNQIEDISP--- 194 (347)
T ss_dssp -G-GTTCTTCCEEECTTCTTCCCC--GG-GTTCTTCCEEECCSSC-CCCCG--G-GGGCTTCSEEECTTSCCCCCGG---
T ss_pred -h-hccCCceeEEECCCCCCcccc--cc-hhhCCCCcEEEecCCC-cCCch--h-hccCCCCCEEEccCCccccccc---
Confidence 1 455777777777776433321 11 3447777788777643 22211 1 5667888888887754332221
Q ss_pred HHhcCCCCCEEEecCCCCCChHHHHHHHHhCCCCcEEEecCCCCCChHHHHHHHHHhcCCCcEEEccCCCCCChHHHHHH
Q 015721 223 VSKSCSSLKTLKLLDCYKVGDKSILSLAKFCKNLETLIIGGCRDISDESIKHLAASCKSSLKNLRMDWCLNISDSSLSCI 302 (402)
Q Consensus 223 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~l~~~ 302 (402)
...+++|+.+++.++....... ...+++|+.|+++++.......+ .. .++|++|+++++ .++. + ..
T Consensus 195 -~~~l~~L~~L~l~~n~l~~~~~----~~~~~~L~~L~l~~n~l~~~~~~----~~-l~~L~~L~l~~n-~l~~--~-~~ 260 (347)
T 4fmz_A 195 -LASLTSLHYFTAYVNQITDITP----VANMTRLNSLKIGNNKITDLSPL----AN-LSQLTWLEIGTN-QISD--I-NA 260 (347)
T ss_dssp -GGGCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCCCGGG----TT-CTTCCEEECCSS-CCCC--C-GG
T ss_pred -ccCCCccceeecccCCCCCCch----hhcCCcCCEEEccCCccCCCcch----hc-CCCCCEEECCCC-ccCC--C-hh
Confidence 4467788888887754332211 44578888888887643222221 22 278999999887 4442 2 23
Q ss_pred HhcCCCCcEEeccCCCCCChHHHHHHHhccCCCcEEEEeCCCCCHHHHHHHHHhCCCCCEEeccCCCCCCHhHHHhhccC
Q 015721 303 LSQCRNLEALDIGCCEEVTDAAFQDLGEVELSLKVLKVNCPKVTVVGIGNVLEKCASLEYIDVRSCPHVTQASCEEAGLQ 382 (402)
Q Consensus 303 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~ 382 (402)
+..+++|+.|++++|. +++. .. ...+++|+.|+++.+.++..... .+..+++|+.|++++|+-..... ++ .
T Consensus 261 ~~~l~~L~~L~l~~n~-l~~~--~~-~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~---~~-~ 331 (347)
T 4fmz_A 261 VKDLTKLKMLNVGSNQ-ISDI--SV-LNNLSQLNSLFLNNNQLGNEDME-VIGGLTNLTTLFLSQNHITDIRP---LA-S 331 (347)
T ss_dssp GTTCTTCCEEECCSSC-CCCC--GG-GGGCTTCSEEECCSSCCCGGGHH-HHHTCTTCSEEECCSSSCCCCGG---GG-G
T ss_pred HhcCCCcCEEEccCCc-cCCC--hh-hcCCCCCCEEECcCCcCCCcChh-HhhccccCCEEEccCCccccccC---hh-h
Confidence 6788899999998864 4332 22 34456899999977777765543 34578999999999987432222 33 6
Q ss_pred CCCcceEecccccc
Q 015721 383 FPQCCKVNFAGCLF 396 (402)
Q Consensus 383 ~p~l~~l~~~~~~~ 396 (402)
+|+++.+++++|+.
T Consensus 332 l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 332 LSKMDSADFANQVI 345 (347)
T ss_dssp CTTCSEESSSCC--
T ss_pred hhccceeehhhhcc
Confidence 88999999998874
No 10
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.82 E-value=1.3e-18 Score=154.08 Aligned_cols=283 Identities=18% Similarity=0.184 Sum_probs=202.3
Q ss_pred HhcCcceEEeccCCcCCCCCCCCChhhHHHHHhhCCCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCCCCcChHHH
Q 015721 63 ARFSRLVELDLSQSVSRSFYPGVTDSDLAVIADGFKSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLTDKGL 142 (402)
Q Consensus 63 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 142 (402)
..++++++|+++++... .+. . ...+++|++|+++++. +.+... ...+++|++|+++++. +...
T Consensus 41 ~~l~~L~~L~l~~~~i~----~~~--~----~~~~~~L~~L~l~~n~-i~~~~~---~~~l~~L~~L~L~~n~-i~~~-- 103 (347)
T 4fmz_A 41 EELESITKLVVAGEKVA----SIQ--G----IEYLTNLEYLNLNGNQ-ITDISP---LSNLVKLTNLYIGTNK-ITDI-- 103 (347)
T ss_dssp HHHTTCSEEECCSSCCC----CCT--T----GGGCTTCCEEECCSSC-CCCCGG---GTTCTTCCEEECCSSC-CCCC--
T ss_pred hhcccccEEEEeCCccc----cch--h----hhhcCCccEEEccCCc-cccchh---hhcCCcCCEEEccCCc-ccCc--
Confidence 36788999999986532 221 1 2568999999999875 544322 4678999999999875 5432
Q ss_pred HHHHhcCccCcEEecCCCccCChHHHHHHHHhCCCCcEEecCCCCCCchHHHHHHHhcCCCCCEEccCCCCCCCcccHHH
Q 015721 143 SAVAEGCQDLRSLHLAGCKSVTDGTLQALSKNCRNLEELGLLGCTSISDSGVIDLVNGCQNIKFLDLNKCSNIGDNGISS 222 (402)
Q Consensus 143 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 222 (402)
+ .+..+++|++|+++++....... ...+++|+.|+++++...... ..+..+++|++|+++++.......
T Consensus 104 ~-~~~~l~~L~~L~l~~n~i~~~~~----~~~l~~L~~L~l~~n~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~--- 172 (347)
T 4fmz_A 104 S-ALQNLTNLRELYLNEDNISDISP----LANLTKMYSLNLGANHNLSDL---SPLSNMTGLNYLTVTESKVKDVTP--- 172 (347)
T ss_dssp G-GGTTCTTCSEEECTTSCCCCCGG----GTTCTTCCEEECTTCTTCCCC---GGGTTCTTCCEEECCSSCCCCCGG---
T ss_pred h-HHcCCCcCCEEECcCCcccCchh----hccCCceeEEECCCCCCcccc---cchhhCCCCcEEEecCCCcCCchh---
Confidence 2 25679999999999975332222 456999999999987555432 126788999999999865443322
Q ss_pred HHhcCCCCCEEEecCCCCCChHHHHHHHHhCCCCcEEEecCCCCCChHHHHHHHHHhcCCCcEEEccCCCCCChHHHHHH
Q 015721 223 VSKSCSSLKTLKLLDCYKVGDKSILSLAKFCKNLETLIIGGCRDISDESIKHLAASCKSSLKNLRMDWCLNISDSSLSCI 302 (402)
Q Consensus 223 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~l~~~ 302 (402)
...+++|++|+++++....... ...+++|+.|+++++.......+ .. .++|++|+++++ .++. +..
T Consensus 173 -~~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~~~~----~~-~~~L~~L~l~~n-~l~~--~~~- 238 (347)
T 4fmz_A 173 -IANLTDLYSLSLNYNQIEDISP----LASLTSLHYFTAYVNQITDITPV----AN-MTRLNSLKIGNN-KITD--LSP- 238 (347)
T ss_dssp -GGGCTTCSEEECTTSCCCCCGG----GGGCTTCCEEECCSSCCCCCGGG----GG-CTTCCEEECCSS-CCCC--CGG-
T ss_pred -hccCCCCCEEEccCCccccccc----ccCCCccceeecccCCCCCCchh----hc-CCcCCEEEccCC-ccCC--Ccc-
Confidence 4578999999999865333222 45689999999988643332222 23 389999999998 4442 222
Q ss_pred HhcCCCCcEEeccCCCCCChHHHHHHHhccCCCcEEEEeCCCCCHHHHHHHHHhCCCCCEEeccCCCCCCHhHHHhhccC
Q 015721 303 LSQCRNLEALDIGCCEEVTDAAFQDLGEVELSLKVLKVNCPKVTVVGIGNVLEKCASLEYIDVRSCPHVTQASCEEAGLQ 382 (402)
Q Consensus 303 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~ 382 (402)
+..+++|+.|++++|. +++. .. ...+++|+.|+++.+.++... .+..+++|+.|++++|+ +.......+. .
T Consensus 239 ~~~l~~L~~L~l~~n~-l~~~--~~-~~~l~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~L~~n~-l~~~~~~~l~-~ 309 (347)
T 4fmz_A 239 LANLSQLTWLEIGTNQ-ISDI--NA-VKDLTKLKMLNVGSNQISDIS---VLNNLSQLNSLFLNNNQ-LGNEDMEVIG-G 309 (347)
T ss_dssp GTTCTTCCEEECCSSC-CCCC--GG-GTTCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSC-CCGGGHHHHH-T
T ss_pred hhcCCCCCEEECCCCc-cCCC--hh-HhcCCCcCEEEccCCccCCCh---hhcCCCCCCEEECcCCc-CCCcChhHhh-c
Confidence 7899999999999865 4332 22 345569999999777777642 35689999999999985 5555555555 7
Q ss_pred CCCcceEecccccc
Q 015721 383 FPQCCKVNFAGCLF 396 (402)
Q Consensus 383 ~p~l~~l~~~~~~~ 396 (402)
+|+++.+++++|+.
T Consensus 310 l~~L~~L~L~~n~l 323 (347)
T 4fmz_A 310 LTNLTTLFLSQNHI 323 (347)
T ss_dssp CTTCSEEECCSSSC
T ss_pred cccCCEEEccCCcc
Confidence 99999999999974
No 11
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.79 E-value=3.6e-17 Score=146.78 Aligned_cols=215 Identities=16% Similarity=0.189 Sum_probs=105.4
Q ss_pred hhCCCCCEEEccCCCCCChhHHHHHH---hcCCCCCeEecCCCC--CcCh---HHH---HHHHhcCccCcEEecCCCccC
Q 015721 95 DGFKSLKLLNLQNCKGITDAGIASIG---SGLCSLQSLDLSYCR--KLTD---KGL---SAVAEGCQDLRSLHLAGCKSV 163 (402)
Q Consensus 95 ~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~--~~~~---~~~---~~~~~~~~~L~~L~l~~~~~~ 163 (402)
..+++|++|+++++. +.......++ ..+++|++|+++++. .+.. .++ ...+..+++|++|+++++. +
T Consensus 29 ~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l 106 (386)
T 2ca6_A 29 LEDDSVKEIVLSGNT-IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA-F 106 (386)
T ss_dssp HHCSCCCEEECTTSE-ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC-C
T ss_pred hcCCCccEEECCCCC-CCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc-C
Confidence 456778888888753 6655544433 356778888887652 1211 111 1223456777777777763 3
Q ss_pred ChH---HHHHHHHhCCCCcEEecCCCCCCchHHH---HHHHhcC---------CCCCEEccCCCCCCCcccHH---HHHh
Q 015721 164 TDG---TLQALSKNCRNLEELGLLGCTSISDSGV---IDLVNGC---------QNIKFLDLNKCSNIGDNGIS---SVSK 225 (402)
Q Consensus 164 ~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~---------~~L~~L~l~~~~~~~~~~~~---~~~~ 225 (402)
... .+......+++|++|+++++ .++..+. ...+..+ ++|++|+++++. +....++ ....
T Consensus 107 ~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~ 184 (386)
T 2ca6_A 107 GPTAQEPLIDFLSKHTPLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMKEWAKTFQ 184 (386)
T ss_dssp CTTTHHHHHHHHHHCTTCCEEECCSS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGGGHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCCEEECcCC-CCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC-CCcHHHHHHHHHHH
Confidence 321 23334455777777777764 3443222 2223333 666666666532 3333333 2233
Q ss_pred cCCCCCEEEecCCCCCChHHHHHHH----HhCCCCcEEEecCCCCCChHHHHHHHHHh--cCCCcEEEccCCCCCChHHH
Q 015721 226 SCSSLKTLKLLDCYKVGDKSILSLA----KFCKNLETLIIGGCRDISDESIKHLAASC--KSSLKNLRMDWCLNISDSSL 299 (402)
Q Consensus 226 ~~~~L~~L~l~~~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~~l~~~~--~~~L~~L~l~~~~~~~~~~l 299 (402)
.+++|++|+++++ .+.+.+...+. ..+++|+.|+++++ .+++.+...++... .++|++|+++++ .+++.+.
T Consensus 185 ~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~ 261 (386)
T 2ca6_A 185 SHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELGLNDC-LLSARGA 261 (386)
T ss_dssp HCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCEEECTTC-CCCHHHH
T ss_pred hCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCC-CCCcHHHHHHHHHHccCCCcCEEECCCC-CCchhhH
Confidence 4556666666654 34433322222 24555666666554 23333333332111 245555555555 3443322
Q ss_pred H---HHHhc--CCCCcEEeccC
Q 015721 300 S---CILSQ--CRNLEALDIGC 316 (402)
Q Consensus 300 ~---~~l~~--~~~L~~L~l~~ 316 (402)
. ..+.. +++|+.|++++
T Consensus 262 ~~l~~~l~~~~~~~L~~L~L~~ 283 (386)
T 2ca6_A 262 AAVVDAFSKLENIGLQTLRLQY 283 (386)
T ss_dssp HHHHHHHHTCSSCCCCEEECCS
T ss_pred HHHHHHHhhccCCCeEEEECcC
Confidence 2 22222 55555555555
No 12
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.77 E-value=1e-16 Score=143.86 Aligned_cols=267 Identities=14% Similarity=0.138 Sum_probs=181.4
Q ss_pred HHHHHhcCcceEEeccCCcCCCCCCCCChhhHH---HHHhhCCCCCEEEccCCC--CCChh---HHHHH---HhcCCCCC
Q 015721 59 RKIAARFSRLVELDLSQSVSRSFYPGVTDSDLA---VIADGFKSLKLLNLQNCK--GITDA---GIASI---GSGLCSLQ 127 (402)
Q Consensus 59 ~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~--~~~~~---~~~~~---~~~~~~L~ 127 (402)
......+++|++|+++++. +...... .....+++|++|+++++. .+... .+..+ ...+++|+
T Consensus 25 ~~~l~~~~~L~~L~L~~n~-------i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~ 97 (386)
T 2ca6_A 25 FAVLLEDDSVKEIVLSGNT-------IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLH 97 (386)
T ss_dssp SHHHHHCSCCCEEECTTSE-------ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCC
T ss_pred HHHHhcCCCccEEECCCCC-------CCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCccc
Confidence 3455678899999999653 4443333 334468999999999863 23322 22222 35689999
Q ss_pred eEecCCCCCcChH---HHHHHHhcCccCcEEecCCCccCChHHHHHH---HHhC---------CCCcEEecCCCCCCchH
Q 015721 128 SLDLSYCRKLTDK---GLSAVAEGCQDLRSLHLAGCKSVTDGTLQAL---SKNC---------RNLEELGLLGCTSISDS 192 (402)
Q Consensus 128 ~L~l~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~---------~~L~~L~l~~~~~~~~~ 192 (402)
+|+++++. +... .++..+..+++|++|+++++. +.......+ ...+ ++|++|+++++ .++..
T Consensus 98 ~L~Ls~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n-~l~~~ 174 (386)
T 2ca6_A 98 TVRLSDNA-FGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RLENG 174 (386)
T ss_dssp EEECCSCC-CCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-CCTGG
T ss_pred EEECCCCc-CCHHHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC-CCCcH
Confidence 99999876 5543 355566789999999999974 443333222 2334 89999999985 45543
Q ss_pred HHH---HHHhcCCCCCEEccCCCCCCCcccHHH----HHhcCCCCCEEEecCCCCCChH---HHHHHHHhCCCCcEEEec
Q 015721 193 GVI---DLVNGCQNIKFLDLNKCSNIGDNGISS----VSKSCSSLKTLKLLDCYKVGDK---SILSLAKFCKNLETLIIG 262 (402)
Q Consensus 193 ~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~~L~~L~l~ 262 (402)
++. ..+..+++|++|+++++ .+.+.++.. ....+++|+.|+++++. +++. .++..+..+++|+.|+++
T Consensus 175 ~~~~l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~~~l~~~~~L~~L~L~ 252 (386)
T 2ca6_A 175 SMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLN 252 (386)
T ss_dssp GHHHHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCCEEECT
T ss_pred HHHHHHHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHHHHHccCCCcCEEECC
Confidence 344 56678899999999986 455444333 34478999999999864 5432 334455668999999998
Q ss_pred CCCCCChHHHHHHHHHh----cCCCcEEEccCCCCCChHH---HHHHH-hcCCCCcEEeccCCCCCChHH--HHHHHhcc
Q 015721 263 GCRDISDESIKHLAASC----KSSLKNLRMDWCLNISDSS---LSCIL-SQCRNLEALDIGCCEEVTDAA--FQDLGEVE 332 (402)
Q Consensus 263 ~~~~~~~~~~~~l~~~~----~~~L~~L~l~~~~~~~~~~---l~~~l-~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~ 332 (402)
++ .+++.....++... .++|++|+++++ .+++.+ ++..+ .++++|++|++++|. +++.. +..+...+
T Consensus 253 ~n-~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~-l~~~~~~~~~l~~~l 329 (386)
T 2ca6_A 253 DC-LLSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNR-FSEEDDVVDEIREVF 329 (386)
T ss_dssp TC-CCCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSB-SCTTSHHHHHHHHHH
T ss_pred CC-CCchhhHHHHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCc-CCcchhHHHHHHHHh
Confidence 87 47776666555542 489999999998 677642 33334 668999999999865 44333 46666656
Q ss_pred CCCcEEEE
Q 015721 333 LSLKVLKV 340 (402)
Q Consensus 333 ~~L~~L~l 340 (402)
++++.+++
T Consensus 330 ~~~~~~~l 337 (386)
T 2ca6_A 330 STRGRGEL 337 (386)
T ss_dssp HHHTCCEE
T ss_pred hhcCcchh
Confidence 56665565
No 13
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.72 E-value=2.9e-16 Score=144.44 Aligned_cols=285 Identities=15% Similarity=0.121 Sum_probs=156.5
Q ss_pred HHhcCcceEEeccCCcCCCCCCCCChhhHHHHHhhCCCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCCCCcChHH
Q 015721 62 AARFSRLVELDLSQSVSRSFYPGVTDSDLAVIADGFKSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLTDKG 141 (402)
Q Consensus 62 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 141 (402)
...+++|++|+++++.. ..... ...+++|++|+++++. +..... ...+++|++|+++++. +....
T Consensus 64 ~~~l~~L~~L~Ls~n~l----~~~~~------~~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~L~~n~-l~~~~ 128 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQL----TDITP------LKNLTKLVDILMNNNQ-IADITP---LANLTNLTGLTLFNNQ-ITDID 128 (466)
T ss_dssp GGGCTTCCEEECCSSCC----CCCGG------GTTCTTCCEEECCSSC-CCCCGG---GTTCTTCCEEECCSSC-CCCCG
T ss_pred hhhhcCCCEEECCCCcc----CCchh------hhccccCCEEECCCCc-cccChh---hcCCCCCCEEECCCCC-CCCCh
Confidence 34678888888887643 22211 2457788888887754 332221 3567778888887764 33221
Q ss_pred HHHHHhcCccCcEEecCCCccCChHHHHH-----------------HHHhCCCCcEEecCCCCCCchHHHHHHHhcCCCC
Q 015721 142 LSAVAEGCQDLRSLHLAGCKSVTDGTLQA-----------------LSKNCRNLEELGLLGCTSISDSGVIDLVNGCQNI 204 (402)
Q Consensus 142 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-----------------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 204 (402)
. ...+++|++|+++++.......+.. ....+++|+.|+++++. +... ..+..+++|
T Consensus 129 --~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~---~~l~~l~~L 201 (466)
T 1o6v_A 129 --P-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK-VSDI---SVLAKLTNL 201 (466)
T ss_dssp --G-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC-CCCC---GGGGGCTTC
T ss_pred --H-HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCc-CCCC---hhhccCCCC
Confidence 1 4557777777776653211111000 02235566666665532 2221 124455666
Q ss_pred CEEccCCCCCCCcccHHHHHhcCCCCCEEEecCCCCCChHHHHHHHHhCCCCcEEEecCCCCCChHHHHHHHHHhcCCCc
Q 015721 205 KFLDLNKCSNIGDNGISSVSKSCSSLKTLKLLDCYKVGDKSILSLAKFCKNLETLIIGGCRDISDESIKHLAASCKSSLK 284 (402)
Q Consensus 205 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~ 284 (402)
++|+++++....... ...+++|++|+++++..... . ....+++|+.|+++++.......+ .. .++|+
T Consensus 202 ~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~---~-~l~~l~~L~~L~l~~n~l~~~~~~----~~-l~~L~ 268 (466)
T 1o6v_A 202 ESLIATNNQISDITP----LGILTNLDELSLNGNQLKDI---G-TLASLTNLTDLDLANNQISNLAPL----SG-LTKLT 268 (466)
T ss_dssp SEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCCC---G-GGGGCTTCSEEECCSSCCCCCGGG----TT-CTTCS
T ss_pred CEEEecCCccccccc----ccccCCCCEEECCCCCcccc---h-hhhcCCCCCEEECCCCccccchhh----hc-CCCCC
Confidence 666666643322211 33466677777766432221 1 123467777777766532222211 22 26777
Q ss_pred EEEccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhccCCCcEEEEeCCCCCHHHHHHHHHhCCCCCEEe
Q 015721 285 NLRMDWCLNISDSSLSCILSQCRNLEALDIGCCEEVTDAAFQDLGEVELSLKVLKVNCPKVTVVGIGNVLEKCASLEYID 364 (402)
Q Consensus 285 ~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~ 364 (402)
+|+++++ .++. +.. +..+++|+.|++++|. +++.. . ...+++|+.|+++.+.++.... +..+++|+.|+
T Consensus 269 ~L~l~~n-~l~~--~~~-~~~l~~L~~L~L~~n~-l~~~~--~-~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~ 337 (466)
T 1o6v_A 269 ELKLGAN-QISN--ISP-LAGLTALTNLELNENQ-LEDIS--P-ISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLF 337 (466)
T ss_dssp EEECCSS-CCCC--CGG-GTTCTTCSEEECCSSC-CSCCG--G-GGGCTTCSEEECCSSCCSCCGG---GGGCTTCCEEE
T ss_pred EEECCCC-ccCc--ccc-ccCCCccCeEEcCCCc-ccCch--h-hcCCCCCCEEECcCCcCCCchh---hccCccCCEeE
Confidence 7777776 3331 122 5677788888887754 32211 1 2345588888886666655322 45788888888
Q ss_pred ccCCCCCCHhHHHhhccCCCCcceEecccccc
Q 015721 365 VRSCPHVTQASCEEAGLQFPQCCKVNFAGCLF 396 (402)
Q Consensus 365 l~~c~~~~~~~~~~~~~~~p~l~~l~~~~~~~ 396 (402)
+++|. ++.. ..++ .+++++.+++++|..
T Consensus 338 l~~n~-l~~~--~~l~-~l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 338 FYNNK-VSDV--SSLA-NLTNINWLSAGHNQI 365 (466)
T ss_dssp CCSSC-CCCC--GGGT-TCTTCCEEECCSSCC
T ss_pred CCCCc-cCCc--hhhc-cCCCCCEEeCCCCcc
Confidence 88874 3322 3333 678888888888764
No 14
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.72 E-value=1.2e-16 Score=146.97 Aligned_cols=284 Identities=20% Similarity=0.186 Sum_probs=187.0
Q ss_pred HHhcCcceEEeccCCcCCCCCCCCChhhHHHHHhhCCCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCCCCcChH-
Q 015721 62 AARFSRLVELDLSQSVSRSFYPGVTDSDLAVIADGFKSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLTDK- 140 (402)
Q Consensus 62 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~- 140 (402)
...+++|++|+++++.. ..... ...+++|++|+++++. +.... . ...+++|++|+++++. +...
T Consensus 86 ~~~l~~L~~L~l~~n~l----~~~~~------~~~l~~L~~L~L~~n~-l~~~~--~-~~~l~~L~~L~l~~n~-l~~~~ 150 (466)
T 1o6v_A 86 LKNLTKLVDILMNNNQI----ADITP------LANLTNLTGLTLFNNQ-ITDID--P-LKNLTNLNRLELSSNT-ISDIS 150 (466)
T ss_dssp GTTCTTCCEEECCSSCC----CCCGG------GTTCTTCCEEECCSSC-CCCCG--G-GTTCTTCSEEEEEEEE-ECCCG
T ss_pred hhccccCCEEECCCCcc----ccChh------hcCCCCCCEEECCCCC-CCCCh--H-HcCCCCCCEEECCCCc-cCCCh
Confidence 55778899999987643 22211 2467888888888764 43322 1 3567777777777653 2211
Q ss_pred HHH-----------------HHHhcCccCcEEecCCCccCChHHHHHHHHhCCCCcEEecCCCCCCchHHHHHHHhcCCC
Q 015721 141 GLS-----------------AVAEGCQDLRSLHLAGCKSVTDGTLQALSKNCRNLEELGLLGCTSISDSGVIDLVNGCQN 203 (402)
Q Consensus 141 ~~~-----------------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 203 (402)
.+. .....+++|++|+++++..... .. ...+++|++|+++++. +.... . +..+++
T Consensus 151 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~-l~~l~~L~~L~l~~n~-l~~~~--~-~~~l~~ 222 (466)
T 1o6v_A 151 ALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI---SV-LAKLTNLESLIATNNQ-ISDIT--P-LGILTN 222 (466)
T ss_dssp GGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC---GG-GGGCTTCSEEECCSSC-CCCCG--G-GGGCTT
T ss_pred hhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC---hh-hccCCCCCEEEecCCc-ccccc--c-ccccCC
Confidence 000 0134678899999988743222 12 3458999999999854 33321 1 567899
Q ss_pred CCEEccCCCCCCCcccHHHHHhcCCCCCEEEecCCCCCChHHHHHHHHhCCCCcEEEecCCCCCChHHHHHHHHHhcCCC
Q 015721 204 IKFLDLNKCSNIGDNGISSVSKSCSSLKTLKLLDCYKVGDKSILSLAKFCKNLETLIIGGCRDISDESIKHLAASCKSSL 283 (402)
Q Consensus 204 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L 283 (402)
|+.|+++++..... . ....+++|++|+++++....... ...+++|+.|+++++.......+ .. .++|
T Consensus 223 L~~L~l~~n~l~~~---~-~l~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~~~~----~~-l~~L 289 (466)
T 1o6v_A 223 LDELSLNGNQLKDI---G-TLASLTNLTDLDLANNQISNLAP----LSGLTKLTELKLGANQISNISPL----AG-LTAL 289 (466)
T ss_dssp CCEEECCSSCCCCC---G-GGGGCTTCSEEECCSSCCCCCGG----GTTCTTCSEEECCSSCCCCCGGG----TT-CTTC
T ss_pred CCEEECCCCCcccc---h-hhhcCCCCCEEECCCCccccchh----hhcCCCCCEEECCCCccCccccc----cC-CCcc
Confidence 99999998653332 2 23478999999999865433222 44589999999988743322222 22 3899
Q ss_pred cEEEccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhccCCCcEEEEeCCCCCHHHHHHHHHhCCCCCEE
Q 015721 284 KNLRMDWCLNISDSSLSCILSQCRNLEALDIGCCEEVTDAAFQDLGEVELSLKVLKVNCPKVTVVGIGNVLEKCASLEYI 363 (402)
Q Consensus 284 ~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L 363 (402)
+.|+++++ .++. +.. +..+++|+.|++++|. +++... ...+++|+.|++..+.++.. ..+..+++|+.|
T Consensus 290 ~~L~L~~n-~l~~--~~~-~~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L 358 (466)
T 1o6v_A 290 TNLELNEN-QLED--ISP-ISNLKNLTYLTLYFNN-ISDISP---VSSLTKLQRLFFYNNKVSDV---SSLANLTNINWL 358 (466)
T ss_dssp SEEECCSS-CCSC--CGG-GGGCTTCSEEECCSSC-CSCCGG---GGGCTTCCEEECCSSCCCCC---GGGTTCTTCCEE
T ss_pred CeEEcCCC-cccC--chh-hcCCCCCCEEECcCCc-CCCchh---hccCccCCEeECCCCccCCc---hhhccCCCCCEE
Confidence 99999987 4442 222 6789999999999875 433221 34566999999976777764 235689999999
Q ss_pred eccCCCCCCHhHHHhhccCCCCcceEecccccc
Q 015721 364 DVRSCPHVTQASCEEAGLQFPQCCKVNFAGCLF 396 (402)
Q Consensus 364 ~l~~c~~~~~~~~~~~~~~~p~l~~l~~~~~~~ 396 (402)
++++|+- .+.. .+ ..+|+++.+++++|+-
T Consensus 359 ~l~~n~l-~~~~--~~-~~l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 359 SAGHNQI-SDLT--PL-ANLTRITQLGLNDQAW 387 (466)
T ss_dssp ECCSSCC-CBCG--GG-TTCTTCCEEECCCEEE
T ss_pred eCCCCcc-Cccc--hh-hcCCCCCEEeccCCcc
Confidence 9999764 3222 23 4789999999998854
No 15
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.69 E-value=3.3e-18 Score=157.22 Aligned_cols=307 Identities=15% Similarity=0.123 Sum_probs=150.6
Q ss_pred CcceEEeccCCcCCCCCCCCChhhHHHHHhhCCCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCCCCcChHHHHHH
Q 015721 66 SRLVELDLSQSVSRSFYPGVTDSDLAVIADGFKSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLTDKGLSAV 145 (402)
Q Consensus 66 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 145 (402)
+++++|+++++... .+....+ ..+++|++|+++++....... ......+++|++|+++++. +... .+..
T Consensus 30 ~~l~~L~Ls~n~i~----~~~~~~~----~~l~~L~~L~L~~n~~~~~i~-~~~~~~l~~L~~L~Ls~n~-l~~~-~~~~ 98 (455)
T 3v47_A 30 AHVNYVDLSLNSIA----ELNETSF----SRLQDLQFLKVEQQTPGLVIR-NNTFRGLSSLIILKLDYNQ-FLQL-ETGA 98 (455)
T ss_dssp TTCCEEECCSSCCC----EECTTTT----SSCTTCCEEECCCCSTTCEEC-TTTTTTCTTCCEEECTTCT-TCEE-CTTT
T ss_pred CccCEEEecCCccC----cCChhHh----ccCccccEEECcCCcccceEC-cccccccccCCEEeCCCCc-cCcc-Chhh
Confidence 56777777765432 1111111 346677777777653211111 1112456777777777654 3221 1223
Q ss_pred HhcCccCcEEecCCCccCChHHHH-HHHHhCCCCcEEecCCCCCCchHHHHHHHhcCCCCCEEccCCCCCCCc--ccHHH
Q 015721 146 AEGCQDLRSLHLAGCKSVTDGTLQ-ALSKNCRNLEELGLLGCTSISDSGVIDLVNGCQNIKFLDLNKCSNIGD--NGISS 222 (402)
Q Consensus 146 ~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~ 222 (402)
+.++++|++|+++++. +....+. .....+++|++|+++++ .+.......++..+++|++|+++++..... ..+..
T Consensus 99 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 176 (455)
T 3v47_A 99 FNGLANLEVLTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLN 176 (455)
T ss_dssp TTTCTTCCEEECTTSC-CBTHHHHSSTTTTCTTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGG
T ss_pred ccCcccCCEEeCCCCC-CCccccCcccccCcccCCEEECCCC-ccCccCcccccCCCCcccEEeCCCCcccccChhhhhc
Confidence 3456777777777653 2221111 12344677777777663 333211112355667777777766432111 00000
Q ss_pred H------------------------------HhcCCCCCEEEecCCCCCChHHHHHHHHh--------------------
Q 015721 223 V------------------------------SKSCSSLKTLKLLDCYKVGDKSILSLAKF-------------------- 252 (402)
Q Consensus 223 ~------------------------------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-------------------- 252 (402)
+ ...+++|++|+++++. +.......+...
T Consensus 177 l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 255 (455)
T 3v47_A 177 FQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG-FKESMAKRFFDAIAGTKIQSLILSNSYNMGSS 255 (455)
T ss_dssp GTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSC-CCHHHHHHHHHHTTTCCEEEEECTTCTTTSCC
T ss_pred cccccccccccccCcccccchhhccccccccccccceeeeEecCCCc-ccccchhhhhccccccceeeEeeccccccccc
Confidence 0 0123567777777643 332222222221
Q ss_pred ------------------CCCCcEEEecCCCCCChHHHHHHHHHhcCCCcEEEccCCCCCChHHHHHHHhcCCCCcEEec
Q 015721 253 ------------------CKNLETLIIGGCRDISDESIKHLAASCKSSLKNLRMDWCLNISDSSLSCILSQCRNLEALDI 314 (402)
Q Consensus 253 ------------------~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l 314 (402)
.++|+.|+++++. +.......+ .. .++|++|+++++ .++. .....+..+++|+.|++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~-~~-l~~L~~L~Ls~n-~l~~-~~~~~~~~l~~L~~L~L 330 (455)
T 3v47_A 256 FGHTNFKDPDNFTFKGLEASGVKTCDLSKSK-IFALLKSVF-SH-FTDLEQLTLAQN-EINK-IDDNAFWGLTHLLKLNL 330 (455)
T ss_dssp TTCCSSCCCCTTTTGGGTTSCCCEEECCSSC-CCEECTTTT-TT-CTTCCEEECTTS-CCCE-ECTTTTTTCTTCCEEEC
T ss_pred cchhhhccCcccccccccccCceEEEecCcc-ccccchhhc-cc-CCCCCEEECCCC-cccc-cChhHhcCcccCCEEEC
Confidence 1345555554432 111100001 11 267777777766 3331 11223566777888888
Q ss_pred cCCCCCChHHHHHHHhccCCCcEEEEeCCCCCHHHHHHHHHhCCCCCEEeccCCCCCCHhHHHhhccCCCCcceEecccc
Q 015721 315 GCCEEVTDAAFQDLGEVELSLKVLKVNCPKVTVVGIGNVLEKCASLEYIDVRSCPHVTQASCEEAGLQFPQCCKVNFAGC 394 (402)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~p~l~~l~~~~~ 394 (402)
++|. ++..... ....+++|++|+++.+.++.... ..+..+++|+.|++++|. ++... ......+++++.++++++
T Consensus 331 s~N~-l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~-~~~~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 331 SQNF-LGSIDSR-MFENLDKLEVLDLSYNHIRALGD-QSFLGLPNLKELALDTNQ-LKSVP-DGIFDRLTSLQKIWLHTN 405 (455)
T ss_dssp CSSC-CCEECGG-GGTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSC-CSCCC-TTTTTTCTTCCEEECCSS
T ss_pred CCCc-cCCcChh-HhcCcccCCEEECCCCcccccCh-hhccccccccEEECCCCc-cccCC-HhHhccCCcccEEEccCC
Confidence 7753 3322222 22334578888886666665322 223467888888888754 33221 122236778888888877
Q ss_pred cc
Q 015721 395 LF 396 (402)
Q Consensus 395 ~~ 396 (402)
+.
T Consensus 406 ~l 407 (455)
T 3v47_A 406 PW 407 (455)
T ss_dssp CB
T ss_pred Cc
Confidence 64
No 16
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.65 E-value=3.5e-17 Score=147.11 Aligned_cols=125 Identities=12% Similarity=0.072 Sum_probs=62.2
Q ss_pred CCCcEEEecCCCCCChHHHHHHHHHhcCCCcEEEccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhccC
Q 015721 254 KNLETLIIGGCRDISDESIKHLAASCKSSLKNLRMDWCLNISDSSLSCILSQCRNLEALDIGCCEEVTDAAFQDLGEVEL 333 (402)
Q Consensus 254 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 333 (402)
++|+.|+++++.-.....+ .. .++|++|+++++ .++.. ....+..+++|+.|+++++. ++. +.......+
T Consensus 226 ~~L~~L~l~~n~l~~~~~l----~~-l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~L~~n~-l~~--~~~~~~~l~ 295 (390)
T 3o6n_A 226 VELTILKLQHNNLTDTAWL----LN-YPGLVEVDLSYN-ELEKI-MYHPFVKMQRLERLYISNNR-LVA--LNLYGQPIP 295 (390)
T ss_dssp SSCCEEECCSSCCCCCGGG----GG-CTTCSEEECCSS-CCCEE-ESGGGTTCSSCCEEECCSSC-CCE--EECSSSCCT
T ss_pred ccccEEECCCCCCcccHHH----cC-CCCccEEECCCC-cCCCc-ChhHccccccCCEEECCCCc-Ccc--cCcccCCCC
Confidence 4566666655432222111 12 266777777665 33311 12234566677777776643 222 111112344
Q ss_pred CCcEEEEeCCCCCHHHHHHHHHhCCCCCEEeccCCCCCCHhHHHhhccCCCCcceEeccccc
Q 015721 334 SLKVLKVNCPKVTVVGIGNVLEKCASLEYIDVRSCPHVTQASCEEAGLQFPQCCKVNFAGCL 395 (402)
Q Consensus 334 ~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~p~l~~l~~~~~~ 395 (402)
+|+.|+++.+.++.. ...+..+++|+.|++++|+- .... ...+++++.+++++++
T Consensus 296 ~L~~L~L~~n~l~~~--~~~~~~l~~L~~L~L~~N~i-~~~~----~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 296 TLKVLDLSHNHLLHV--ERNQPQFDRLENLYLDHNSI-VTLK----LSTHHTLKNLTLSHND 350 (390)
T ss_dssp TCCEEECCSSCCCCC--GGGHHHHTTCSEEECCSSCC-CCCC----CCTTCCCSEEECCSSC
T ss_pred CCCEEECCCCcceec--CccccccCcCCEEECCCCcc-ceeC----chhhccCCEEEcCCCC
Confidence 677777755555532 22234566777777766543 2211 2246666677776665
No 17
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.65 E-value=7.6e-18 Score=155.65 Aligned_cols=300 Identities=17% Similarity=0.139 Sum_probs=154.1
Q ss_pred CcceEEeccCCcCCCCCCCCChhhHHHHHhhCCCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCCCCcChHHHHHH
Q 015721 66 SRLVELDLSQSVSRSFYPGVTDSDLAVIADGFKSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLTDKGLSAV 145 (402)
Q Consensus 66 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 145 (402)
++++.|+++++.... +....+ ..+++|++|+++++. +.......+ ..+++|++|+++++. +.... +..
T Consensus 32 ~~l~~L~L~~n~l~~----~~~~~~----~~l~~L~~L~L~~n~-i~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~-~~~ 99 (477)
T 2id5_A 32 TETRLLDLGKNRIKT----LNQDEF----ASFPHLEELELNENI-VSAVEPGAF-NNLFNLRTLGLRSNR-LKLIP-LGV 99 (477)
T ss_dssp TTCSEEECCSSCCCE----ECTTTT----TTCTTCCEEECTTSC-CCEECTTTT-TTCTTCCEEECCSSC-CCSCC-TTS
T ss_pred CCCcEEECCCCccce----ECHhHc----cCCCCCCEEECCCCc-cCEeChhhh-hCCccCCEEECCCCc-CCccC-ccc
Confidence 467788888765322 211111 357788888887753 443322222 457788888887754 33211 122
Q ss_pred HhcCccCcEEecCCCccCChHHHHHHHHhCCCCcEEecCCCCCCchHHHHHHHhcCCCCCEEccCCCCCCCcccHHHHHh
Q 015721 146 AEGCQDLRSLHLAGCKSVTDGTLQALSKNCRNLEELGLLGCTSISDSGVIDLVNGCQNIKFLDLNKCSNIGDNGISSVSK 225 (402)
Q Consensus 146 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 225 (402)
+.++++|++|+++++.. ... .+..+..+++|++|+++++ .+... ....+..+++|++|+++++.. ... ......
T Consensus 100 ~~~l~~L~~L~Ls~n~i-~~~-~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n~l-~~~-~~~~l~ 173 (477)
T 2id5_A 100 FTGLSNLTKLDISENKI-VIL-LDYMFQDLYNLKSLEVGDN-DLVYI-SHRAFSGLNSLEQLTLEKCNL-TSI-PTEALS 173 (477)
T ss_dssp STTCTTCCEEECTTSCC-CEE-CTTTTTTCTTCCEEEECCT-TCCEE-CTTSSTTCTTCCEEEEESCCC-SSC-CHHHHT
T ss_pred ccCCCCCCEEECCCCcc-ccC-ChhHccccccCCEEECCCC-cccee-ChhhccCCCCCCEEECCCCcC-ccc-ChhHhc
Confidence 34577888888877632 211 1122344778888888763 33221 112345667788888877532 222 233345
Q ss_pred cCCCCCEEEecCCCCCChHHHHHHHHhCCCCcEEEecCCCCCChHHHHHHHHHhcCCCcEEEccCCCCCChHHHHHHHhc
Q 015721 226 SCSSLKTLKLLDCYKVGDKSILSLAKFCKNLETLIIGGCRDISDESIKHLAASCKSSLKNLRMDWCLNISDSSLSCILSQ 305 (402)
Q Consensus 226 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~l~~~l~~ 305 (402)
.+++|+.|++.++.. .... ...+..+++|+.|+++++..........+ . ..+|++|+++++ .++.. ....+..
T Consensus 174 ~l~~L~~L~l~~n~i-~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~-~~~L~~L~l~~n-~l~~~-~~~~~~~ 246 (477)
T 2id5_A 174 HLHGLIVLRLRHLNI-NAIR-DYSFKRLYRLKVLEISHWPYLDTMTPNCL--Y-GLNLTSLSITHC-NLTAV-PYLAVRH 246 (477)
T ss_dssp TCTTCCEEEEESCCC-CEEC-TTCSCSCTTCCEEEEECCTTCCEECTTTT--T-TCCCSEEEEESS-CCCSC-CHHHHTT
T ss_pred ccCCCcEEeCCCCcC-cEeC-hhhcccCcccceeeCCCCccccccCcccc--c-CccccEEECcCC-ccccc-CHHHhcC
Confidence 677788887776432 2111 11223366777777776543321110000 0 136777777665 33311 1123566
Q ss_pred CCCCcEEeccCCCCCChHHHHHHHhccCCCcEEEEeCCCCCHHHHHHHHHhCCCCCEEeccCCCCCCHhHHHhhccCCCC
Q 015721 306 CRNLEALDIGCCEEVTDAAFQDLGEVELSLKVLKVNCPKVTVVGIGNVLEKCASLEYIDVRSCPHVTQASCEEAGLQFPQ 385 (402)
Q Consensus 306 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~p~ 385 (402)
+++|+.|+++++. ++......+ ..+++|+.|++..+.++..... .+..+++|+.|++++|. ++... ......+++
T Consensus 247 l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~N~-l~~~~-~~~~~~l~~ 321 (477)
T 2id5_A 247 LVYLRFLNLSYNP-ISTIEGSML-HELLRLQEIQLVGGQLAVVEPY-AFRGLNYLRVLNVSGNQ-LTTLE-ESVFHSVGN 321 (477)
T ss_dssp CTTCCEEECCSSC-CCEECTTSC-TTCTTCCEEECCSSCCSEECTT-TBTTCTTCCEEECCSSC-CSCCC-GGGBSCGGG
T ss_pred ccccCeeECCCCc-CCccChhhc-cccccCCEEECCCCccceECHH-HhcCcccCCEEECCCCc-CceeC-HhHcCCCcc
Confidence 7777777777643 322211111 2334677777755555543221 22356677777776653 22211 112224566
Q ss_pred cceEeccccc
Q 015721 386 CCKVNFAGCL 395 (402)
Q Consensus 386 l~~l~~~~~~ 395 (402)
++.+++++++
T Consensus 322 L~~L~l~~N~ 331 (477)
T 2id5_A 322 LETLILDSNP 331 (477)
T ss_dssp CCEEECCSSC
T ss_pred cCEEEccCCC
Confidence 6666666655
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.64 E-value=5.1e-16 Score=146.12 Aligned_cols=108 Identities=12% Similarity=0.130 Sum_probs=56.4
Q ss_pred CCCcEEEccCCCCCChHHHH-HHHhcCCCCcEEeccCCCCCChHHHHHH--HhccCCCcEEEEeCCCCCHHHH-HHHHHh
Q 015721 281 SSLKNLRMDWCLNISDSSLS-CILSQCRNLEALDIGCCEEVTDAAFQDL--GEVELSLKVLKVNCPKVTVVGI-GNVLEK 356 (402)
Q Consensus 281 ~~L~~L~l~~~~~~~~~~l~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~l-~~~~~~ 356 (402)
++|+.|+++++ .+. .++ .++..+++|+.|+++++. +++...... ...+++|+.|+++.+.++.... ...+..
T Consensus 310 ~~L~~L~l~~n-~l~--~ip~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 385 (549)
T 2z81_A 310 EKVKRITVENS-KVF--LVPCSFSQHLKSLEFLDLSENL-MVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLT 385 (549)
T ss_dssp TTCCEEEEESS-CCC--CCCHHHHHHCTTCCEEECCSSC-CCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGG
T ss_pred ccceEEEeccC-ccc--cCCHHHHhcCccccEEEccCCc-cccccccchhhhhccccCcEEEccCCcccccccchhhhhc
Confidence 45566666554 222 111 223467777777777644 443332221 2334577777776666655432 233556
Q ss_pred CCCCCEEeccCCCCCCHhHHHhhccCCCCcceEeccccc
Q 015721 357 CASLEYIDVRSCPHVTQASCEEAGLQFPQCCKVNFAGCL 395 (402)
Q Consensus 357 ~~~L~~L~l~~c~~~~~~~~~~~~~~~p~l~~l~~~~~~ 395 (402)
+++|+.|++++|. ++ .++.....+++++.+++++|.
T Consensus 386 l~~L~~L~Ls~N~-l~--~lp~~~~~~~~L~~L~Ls~N~ 421 (549)
T 2z81_A 386 LKNLTSLDISRNT-FH--PMPDSCQWPEKMRFLNLSSTG 421 (549)
T ss_dssp CTTCCEEECTTCC-CC--CCCSCCCCCTTCCEEECTTSC
T ss_pred CCCCCEEECCCCC-Cc--cCChhhcccccccEEECCCCC
Confidence 7777777777763 32 122222245566666666654
No 19
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.64 E-value=8.9e-17 Score=152.33 Aligned_cols=288 Identities=11% Similarity=0.046 Sum_probs=127.6
Q ss_pred HHHHhcCcceEEeccCCcCCCCCCCCChhhHHHHHhhCCCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCCCCcCh
Q 015721 60 KIAARFSRLVELDLSQSVSRSFYPGVTDSDLAVIADGFKSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLTD 139 (402)
Q Consensus 60 ~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 139 (402)
.++..+++|+.|+++++... .+....+ ..+++|+.|+++++. +...... ....+++|++|+++++. +..
T Consensus 69 ~~~~~l~~L~~L~L~~n~l~----~~~~~~~----~~l~~L~~L~L~~n~-l~~~~~~-~~~~l~~L~~L~L~~n~-l~~ 137 (597)
T 3oja_B 69 ALLDSFRQVELLNLNDLQIE----EIDTYAF----AYAHTIQKLYMGFNA-IRYLPPH-VFQNVPLLTVLVLERND-LSS 137 (597)
T ss_dssp HHHHHCCCCSEEECTTSCCC----EECTTTT----TTCTTCCEEECCSSC-CCCCCTT-TTTTCTTCCEEECCSSC-CCC
T ss_pred HHHccCCCCcEEECCCCCCC----CCChHHh----cCCCCCCEEECCCCc-CCCCCHH-HHcCCCCCCEEEeeCCC-CCC
Confidence 34445566666666654321 1111111 235566666666543 3322111 11345666666666543 321
Q ss_pred HHHHHHHhcCccCcEEecCCCccCChHHHHHHHHhCCCCcEEecCCCCCCchHHHHHHHhcCCCCCEEccCCCCCCCccc
Q 015721 140 KGLSAVAEGCQDLRSLHLAGCKSVTDGTLQALSKNCRNLEELGLLGCTSISDSGVIDLVNGCQNIKFLDLNKCSNIGDNG 219 (402)
Q Consensus 140 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 219 (402)
. .+..+..+++|++|+++++.. ... .+..+..+++|+.|+++++ .++.. -+..+++|+.|+++++. +...
T Consensus 138 l-~~~~~~~l~~L~~L~Ls~N~l-~~~-~~~~~~~l~~L~~L~L~~N-~l~~~----~~~~l~~L~~L~l~~n~-l~~l- 207 (597)
T 3oja_B 138 L-PRGIFHNTPKLTTLSMSNNNL-ERI-EDDTFQATTSLQNLQLSSN-RLTHV----DLSLIPSLFHANVSYNL-LSTL- 207 (597)
T ss_dssp C-CTTTTTTCTTCCEEECCSSCC-CBC-CTTTTTTCTTCCEEECTTS-CCSBC----CGGGCTTCSEEECCSSC-CSEE-
T ss_pred C-CHHHhccCCCCCEEEeeCCcC-CCC-ChhhhhcCCcCcEEECcCC-CCCCc----ChhhhhhhhhhhcccCc-cccc-
Confidence 1 111224456666666665422 111 1112233566666666653 22221 12344555555555432 2111
Q ss_pred HHHHHhcCCCCCEEEecCCCCCChHHHHHHHHhCCCCcEEEecCCCCCChHHHHHHHHHhcCCCcEEEccCCCCCChHHH
Q 015721 220 ISSVSKSCSSLKTLKLLDCYKVGDKSILSLAKFCKNLETLIIGGCRDISDESIKHLAASCKSSLKNLRMDWCLNISDSSL 299 (402)
Q Consensus 220 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~l 299 (402)
...++|+.|+++++. +.... . ...++|+.|+++++.......+. . .++|+.|+++++ .++.. .
T Consensus 208 -----~~~~~L~~L~ls~n~-l~~~~--~--~~~~~L~~L~L~~n~l~~~~~l~----~-l~~L~~L~Ls~N-~l~~~-~ 270 (597)
T 3oja_B 208 -----AIPIAVEELDASHNS-INVVR--G--PVNVELTILKLQHNNLTDTAWLL----N-YPGLVEVDLSYN-ELEKI-M 270 (597)
T ss_dssp -----ECCTTCSEEECCSSC-CCEEE--C--SCCSCCCEEECCSSCCCCCGGGG----G-CTTCSEEECCSS-CCCEE-E
T ss_pred -----cCCchhheeeccCCc-ccccc--c--ccCCCCCEEECCCCCCCCChhhc----c-CCCCCEEECCCC-ccCCC-C
Confidence 122345555555432 11100 0 01245666666554322221111 1 266666666665 23211 1
Q ss_pred HHHHhcCCCCcEEeccCCCCCChHHHHHHHhccCCCcEEEEeCCCCCHHHHHHHHHhCCCCCEEeccCCCCCCHhHHHhh
Q 015721 300 SCILSQCRNLEALDIGCCEEVTDAAFQDLGEVELSLKVLKVNCPKVTVVGIGNVLEKCASLEYIDVRSCPHVTQASCEEA 379 (402)
Q Consensus 300 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~ 379 (402)
+..+..+++|+.|+++++. ++. +......+++|+.|+++.|.++. ++..+..+++|+.|++++|+-.. ..
T Consensus 271 ~~~~~~l~~L~~L~Ls~N~-l~~--l~~~~~~l~~L~~L~Ls~N~l~~--i~~~~~~l~~L~~L~L~~N~l~~-~~---- 340 (597)
T 3oja_B 271 YHPFVKMQRLERLYISNNR-LVA--LNLYGQPIPTLKVLDLSHNHLLH--VERNQPQFDRLENLYLDHNSIVT-LK---- 340 (597)
T ss_dssp SGGGTTCSSCCEEECTTSC-CCE--EECSSSCCTTCCEEECCSSCCCC--CGGGHHHHTTCSEEECCSSCCCC-CC----
T ss_pred HHHhcCccCCCEEECCCCC-CCC--CCcccccCCCCcEEECCCCCCCc--cCcccccCCCCCEEECCCCCCCC-cC----
Confidence 2234566666666666643 222 11112234466666665555553 22223456666666666654322 11
Q ss_pred ccCCCCcceEeccccc
Q 015721 380 GLQFPQCCKVNFAGCL 395 (402)
Q Consensus 380 ~~~~p~l~~l~~~~~~ 395 (402)
...+|++..++++||+
T Consensus 341 ~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 341 LSTHHTLKNLTLSHND 356 (597)
T ss_dssp CCTTCCCSEEECCSSC
T ss_pred hhhcCCCCEEEeeCCC
Confidence 2245666666666655
No 20
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.64 E-value=4.5e-18 Score=165.86 Aligned_cols=39 Identities=26% Similarity=0.515 Sum_probs=18.2
Q ss_pred HhcCCCCCEEccCCCCCCCcccHHHHHhcCCCCCEEEecCC
Q 015721 198 VNGCQNIKFLDLNKCSNIGDNGISSVSKSCSSLKTLKLLDC 238 (402)
Q Consensus 198 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 238 (402)
+..+++|++|+++++..... ++.....+++|++|+++++
T Consensus 219 l~~l~~L~~L~Ls~n~l~~~--~~~~l~~l~~L~~L~Ls~n 257 (768)
T 3rgz_A 219 LGDCSALQHLDISGNKLSGD--FSRAISTCTELKLLNISSN 257 (768)
T ss_dssp CTTCCSCCEEECCSSCCCSC--HHHHTTTCSSCCEEECCSS
T ss_pred cccCCCCCEEECcCCcCCCc--ccHHHhcCCCCCEEECCCC
Confidence 34455555555555332211 3333444555555555544
No 21
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.63 E-value=1.4e-17 Score=158.69 Aligned_cols=85 Identities=14% Similarity=0.273 Sum_probs=37.7
Q ss_pred CCCcEEEccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhccCCCcEEEEeCCCCCHHHHHHHHHhCCCC
Q 015721 281 SSLKNLRMDWCLNISDSSLSCILSQCRNLEALDIGCCEEVTDAAFQDLGEVELSLKVLKVNCPKVTVVGIGNVLEKCASL 360 (402)
Q Consensus 281 ~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L 360 (402)
++|+.|+++++ .++. ..+..+..+++|+.|+++++. ++......+. ..++| .|++..|.++.... ..+..+++|
T Consensus 476 ~~L~~L~Ls~n-~l~~-~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~-~l~~L-~L~L~~N~l~~~~~-~~~~~l~~L 549 (606)
T 3t6q_A 476 GRLEILVLSFC-DLSS-IDQHAFTSLKMMNHVDLSHNR-LTSSSIEALS-HLKGI-YLNLASNHISIILP-SLLPILSQQ 549 (606)
T ss_dssp TTCCEEECTTS-CCCE-ECTTTTTTCTTCCEEECCSSC-CCGGGGGGGT-TCCSC-EEECCSSCCCCCCG-GGHHHHHTS
T ss_pred CCccEEECCCC-ccCc-cChhhhccccCCCEEECCCCc-cCcCChhHhC-ccccc-EEECcCCcccccCH-hhcccCCCC
Confidence 55666666555 2221 111224455566666666532 3332222222 22245 55554444443211 222345566
Q ss_pred CEEeccCCCCC
Q 015721 361 EYIDVRSCPHV 371 (402)
Q Consensus 361 ~~L~l~~c~~~ 371 (402)
+.|++++||..
T Consensus 550 ~~L~l~~N~~~ 560 (606)
T 3t6q_A 550 RTINLRQNPLD 560 (606)
T ss_dssp SEEECTTCCEE
T ss_pred CEEeCCCCCcc
Confidence 66666665544
No 22
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.63 E-value=1.5e-13 Score=122.00 Aligned_cols=261 Identities=17% Similarity=0.187 Sum_probs=161.1
Q ss_pred EEccCCCCCChhHHHHHHhcCCCCCeEecCCCCCcChHHH---HHHHhcCc-cCcEEecCCCccCChHH---HHHHHHhC
Q 015721 103 LNLQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLTDKGL---SAVAEGCQ-DLRSLHLAGCKSVTDGT---LQALSKNC 175 (402)
Q Consensus 103 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~-~L~~L~l~~~~~~~~~~---~~~~~~~~ 175 (402)
++++.. .+.. .++.+....++|++|+++++. ++..+. ...+..++ +|++|+++++. +.+.. +.......
T Consensus 3 ~~ls~n-~~~~-~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~ 78 (362)
T 3goz_A 3 YKLTLH-PGSN-PVEEFTSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNS-LGFKNSDELVQILAAI 78 (362)
T ss_dssp EECCCC-TTCC-HHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSC-GGGSCHHHHHHHHHTS
T ss_pred cccccc-cchH-HHHHHHhCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCC-CCHHHHHHHHHHHhcc
Confidence 344443 2443 244555556679999999876 554433 24455677 89999999974 44332 33333333
Q ss_pred -CCCcEEecCCCCCCch---HHHHHHHhcC-CCCCEEccCCCCCCCcccHHHHH---hc-CCCCCEEEecCCCCCChH--
Q 015721 176 -RNLEELGLLGCTSISD---SGVIDLVNGC-QNIKFLDLNKCSNIGDNGISSVS---KS-CSSLKTLKLLDCYKVGDK-- 244 (402)
Q Consensus 176 -~~L~~L~l~~~~~~~~---~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~---~~-~~~L~~L~l~~~~~~~~~-- 244 (402)
++|++|+++++. ++. ..+...+..+ ++|++|+++++. ++..+...+. .. .++|++|+++++ .+++.
T Consensus 79 ~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~ 155 (362)
T 3goz_A 79 PANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSS 155 (362)
T ss_dssp CTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCH
T ss_pred CCCccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHH
Confidence 899999999853 433 3344556666 899999999854 4444444333 23 368999999985 34432
Q ss_pred -HHHHHHHhCC-CCcEEEecCCCCCChHHHHHHH---HHhcCCCcEEEccCCCCCChH---HHHHHHhc-CCCCcEEecc
Q 015721 245 -SILSLAKFCK-NLETLIIGGCRDISDESIKHLA---ASCKSSLKNLRMDWCLNISDS---SLSCILSQ-CRNLEALDIG 315 (402)
Q Consensus 245 -~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~l~---~~~~~~L~~L~l~~~~~~~~~---~l~~~l~~-~~~L~~L~l~ 315 (402)
.+.......+ +|++|+++++ .+++.....++ ..++++|++|+++++ .+++. .+...+.. .++|+.|+++
T Consensus 156 ~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~Ls 233 (362)
T 3goz_A 156 DELIQILAAIPANVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSAN-LLGLKSYAELAYIFSSIPNHVVSLNLC 233 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHHSCTTCCEEECC
T ss_pred HHHHHHHhcCCccccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCC-CCChhHHHHHHHHHhcCCCCceEEECc
Confidence 3333344455 8999999886 45444443333 233248999999987 45532 24444545 4689999999
Q ss_pred CCCCCChHHHHHH---HhccCCCcEEEEeCCC---CCHHHHHHHHH---hCCCCCEEeccCCCCCCHh
Q 015721 316 CCEEVTDAAFQDL---GEVELSLKVLKVNCPK---VTVVGIGNVLE---KCASLEYIDVRSCPHVTQA 374 (402)
Q Consensus 316 ~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~---~~~~~l~~~~~---~~~~L~~L~l~~c~~~~~~ 374 (402)
+| .+++.+...+ ....++|+.|+++.+. ++...+..+.. .+++|+.|++++++ +.+.
T Consensus 234 ~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~-l~~~ 299 (362)
T 3goz_A 234 LN-CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE-IHPS 299 (362)
T ss_dssp SS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB-CCGG
T ss_pred CC-CCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc-CCCc
Confidence 85 4655444333 3445689999995554 66665655544 45567778888754 4433
No 23
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.62 E-value=6.3e-17 Score=148.65 Aligned_cols=284 Identities=15% Similarity=0.107 Sum_probs=175.2
Q ss_pred CCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCCCCcChHHHHHHHhcCccCcEEecCCCccCChHHHHHHHHhCCC
Q 015721 98 KSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLTDKGLSAVAEGCQDLRSLHLAGCKSVTDGTLQALSKNCRN 177 (402)
Q Consensus 98 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 177 (402)
++|++|+++++. +.......+ ..+++|++|+++++. +.....+..+.++++|++|+++++.. ... .+..+..+++
T Consensus 30 ~~l~~L~Ls~n~-i~~~~~~~~-~~l~~L~~L~L~~n~-~~~~i~~~~~~~l~~L~~L~Ls~n~l-~~~-~~~~~~~l~~ 104 (455)
T 3v47_A 30 AHVNYVDLSLNS-IAELNETSF-SRLQDLQFLKVEQQT-PGLVIRNNTFRGLSSLIILKLDYNQF-LQL-ETGAFNGLAN 104 (455)
T ss_dssp TTCCEEECCSSC-CCEECTTTT-SSCTTCCEEECCCCS-TTCEECTTTTTTCTTCCEEECTTCTT-CEE-CTTTTTTCTT
T ss_pred CccCEEEecCCc-cCcCChhHh-ccCccccEEECcCCc-ccceECcccccccccCCEEeCCCCcc-Ccc-ChhhccCccc
Confidence 689999999864 554322333 578999999999875 32111123346789999999999743 221 2233455899
Q ss_pred CcEEecCCCCCCchHHHH-HHHhcCCCCCEEccCCCCCCCcccHHHHHhcCCCCCEEEecCCCCCCh--HHHHHH-----
Q 015721 178 LEELGLLGCTSISDSGVI-DLVNGCQNIKFLDLNKCSNIGDNGISSVSKSCSSLKTLKLLDCYKVGD--KSILSL----- 249 (402)
Q Consensus 178 L~~L~l~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~----- 249 (402)
|++|+++++ .+...... ..+..+++|++|+++++... ......+...+++|++|+++++..... ..+..+
T Consensus 105 L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L 182 (455)
T 3v47_A 105 LEVLTLTQC-NLDGAVLSGNFFKPLTSLEMLVLRDNNIK-KIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHF 182 (455)
T ss_dssp CCEEECTTS-CCBTHHHHSSTTTTCTTCCEEECCSSBCC-SCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEE
T ss_pred CCEEeCCCC-CCCccccCcccccCcccCCEEECCCCccC-ccCcccccCCCCcccEEeCCCCcccccChhhhhccccccc
Confidence 999999985 45442222 23678899999999986533 221222355789999999988642211 111000
Q ss_pred -------------------------HHhCCCCcEEEecCCCCCChHHHHHHHHHh-------------------------
Q 015721 250 -------------------------AKFCKNLETLIIGGCRDISDESIKHLAASC------------------------- 279 (402)
Q Consensus 250 -------------------------~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~------------------------- 279 (402)
...+++|+.|+++++ .+.......+....
T Consensus 183 ~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 261 (455)
T 3v47_A 183 TLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGN-GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNF 261 (455)
T ss_dssp EEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTS-CCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSS
T ss_pred cccccccCcccccchhhccccccccccccceeeeEecCCC-cccccchhhhhccccccceeeEeeccccccccccchhhh
Confidence 112367888888776 34443333332221
Q ss_pred ------------cCCCcEEEccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhccCCCcEEEEeCCCCCH
Q 015721 280 ------------KSSLKNLRMDWCLNISDSSLSCILSQCRNLEALDIGCCEEVTDAAFQDLGEVELSLKVLKVNCPKVTV 347 (402)
Q Consensus 280 ------------~~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 347 (402)
.++|++|+++++ .++. .....+..+++|+.|+++++. +++.....+ ..+++|+.|+++.+.++.
T Consensus 262 ~~~~~~~~~~~~~~~L~~L~l~~n-~l~~-~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~Ls~N~l~~ 337 (455)
T 3v47_A 262 KDPDNFTFKGLEASGVKTCDLSKS-KIFA-LLKSVFSHFTDLEQLTLAQNE-INKIDDNAF-WGLTHLLKLNLSQNFLGS 337 (455)
T ss_dssp CCCCTTTTGGGTTSCCCEEECCSS-CCCE-ECTTTTTTCTTCCEEECTTSC-CCEECTTTT-TTCTTCCEEECCSSCCCE
T ss_pred ccCcccccccccccCceEEEecCc-cccc-cchhhcccCCCCCEEECCCCc-ccccChhHh-cCcccCCEEECCCCccCC
Confidence 135666666665 2321 123346778899999998754 433222222 334589999997777765
Q ss_pred HHHHHHHHhCCCCCEEeccCCCCCCHhHHHhhccCCCCcceEecccccc
Q 015721 348 VGIGNVLEKCASLEYIDVRSCPHVTQASCEEAGLQFPQCCKVNFAGCLF 396 (402)
Q Consensus 348 ~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~p~l~~l~~~~~~~ 396 (402)
... ..+..+++|+.|++++|. ++......+. .+|+++.+++++|..
T Consensus 338 ~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~-~l~~L~~L~L~~N~l 383 (455)
T 3v47_A 338 IDS-RMFENLDKLEVLDLSYNH-IRALGDQSFL-GLPNLKELALDTNQL 383 (455)
T ss_dssp ECG-GGGTTCTTCCEEECCSSC-CCEECTTTTT-TCTTCCEEECCSSCC
T ss_pred cCh-hHhcCcccCCEEECCCCc-ccccChhhcc-ccccccEEECCCCcc
Confidence 422 234578999999999874 4433223333 688999999988754
No 24
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.62 E-value=1.1e-17 Score=159.42 Aligned_cols=302 Identities=16% Similarity=0.178 Sum_probs=187.6
Q ss_pred cceEEeccCCcCCCCCCCCChhhHHHHHhhCCCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCCCCcChHHHHHHH
Q 015721 67 RLVELDLSQSVSRSFYPGVTDSDLAVIADGFKSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLTDKGLSAVA 146 (402)
Q Consensus 67 ~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 146 (402)
.++.++++++.. ..+....+ ..+++|++|+++++. ++. ++.....+++|++|+++++. +... .+...
T Consensus 255 ~L~~L~l~~n~l----~~~~~~~~----~~l~~L~~L~l~~n~-l~~--lp~~l~~l~~L~~L~l~~n~-l~~~-~~~~~ 321 (606)
T 3t6q_A 255 SVESINLQKHYF----FNISSNTF----HCFSGLQELDLTATH-LSE--LPSGLVGLSTLKKLVLSANK-FENL-CQISA 321 (606)
T ss_dssp EEEEEECTTCCC----SSCCTTTT----TTCTTCSEEECTTSC-CSC--CCSSCCSCTTCCEEECTTCC-CSBG-GGGCG
T ss_pred ceeEEEeecCcc----CccCHHHh----ccccCCCEEeccCCc-cCC--CChhhcccccCCEEECccCC-cCcC-chhhh
Confidence 577888877653 22222222 457899999999864 442 22223567899999999875 4432 12334
Q ss_pred hcCccCcEEecCCCccCChHHHHHHHHhCCCCcEEecCCCCCCchHH-HHHHHhcCCCCCEEccCCCCCCCcccHHHHHh
Q 015721 147 EGCQDLRSLHLAGCKSVTDGTLQALSKNCRNLEELGLLGCTSISDSG-VIDLVNGCQNIKFLDLNKCSNIGDNGISSVSK 225 (402)
Q Consensus 147 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 225 (402)
..+++|++|++.++..... ........+++|++|+++++. +.... ....+..+++|++|+++++... .. .+....
T Consensus 322 ~~l~~L~~L~l~~n~~~~~-~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~-~~~~~~ 397 (606)
T 3t6q_A 322 SNFPSLTHLSIKGNTKRLE-LGTGCLENLENLRELDLSHDD-IETSDCCNLQLRNLSHLQSLNLSYNEPL-SL-KTEAFK 397 (606)
T ss_dssp GGCTTCSEEECCSCSSCCB-CCSSTTTTCTTCCEEECCSSC-CCEEEESTTTTTTCTTCCEEECCSCSCE-EE-CTTTTT
T ss_pred hccCcCCEEECCCCCcccc-cchhhhhccCcCCEEECCCCc-cccccCcchhcccCCCCCEEECCCCcCC-cC-CHHHhc
Confidence 6789999999998743211 111223458999999998853 33211 1234667899999999886432 21 223344
Q ss_pred cCCCCCEEEecCCCCCChHHHHHHHHhCCCCcEEEecCCCCCChHHHHHHHHHhcCCCcEEEccCCCCCChHHH--HHHH
Q 015721 226 SCSSLKTLKLLDCYKVGDKSILSLAKFCKNLETLIIGGCRDISDESIKHLAASCKSSLKNLRMDWCLNISDSSL--SCIL 303 (402)
Q Consensus 226 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~l--~~~l 303 (402)
.+++|++|+++++..... ........+++|+.|+++++. +.......+ .. .++|++|+++++ .++...+ ...+
T Consensus 398 ~l~~L~~L~l~~n~l~~~-~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~-~~-l~~L~~L~L~~n-~l~~~~~~~~~~~ 472 (606)
T 3t6q_A 398 ECPQLELLDLAFTRLKVK-DAQSPFQNLHLLKVLNLSHSL-LDISSEQLF-DG-LPALQHLNLQGN-HFPKGNIQKTNSL 472 (606)
T ss_dssp TCTTCSEEECTTCCEECC-TTCCTTTTCTTCCEEECTTCC-CBTTCTTTT-TT-CTTCCEEECTTC-BCGGGEECSSCGG
T ss_pred CCccCCeEECCCCcCCCc-ccchhhhCcccCCEEECCCCc-cCCcCHHHH-hC-CCCCCEEECCCC-CCCccccccchhh
Confidence 678999999988643221 111223457899999998864 222111111 12 289999999987 3432111 1236
Q ss_pred hcCCCCcEEeccCCCCCChHHHHHHHhccCCCcEEEEeCCCCCHHHHHHHHHhCCCCCEEeccCCCCCCHhHHHhhccCC
Q 015721 304 SQCRNLEALDIGCCEEVTDAAFQDLGEVELSLKVLKVNCPKVTVVGIGNVLEKCASLEYIDVRSCPHVTQASCEEAGLQF 383 (402)
Q Consensus 304 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~ 383 (402)
..+++|+.|++++|. ++......+ ..+++|+.|+++.+.++..... .+..++.| .|++++|. ++... +.....+
T Consensus 473 ~~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~-~l~~l~~L-~L~L~~N~-l~~~~-~~~~~~l 546 (606)
T 3t6q_A 473 QTLGRLEILVLSFCD-LSSIDQHAF-TSLKMMNHVDLSHNRLTSSSIE-ALSHLKGI-YLNLASNH-ISIIL-PSLLPIL 546 (606)
T ss_dssp GGCTTCCEEECTTSC-CCEECTTTT-TTCTTCCEEECCSSCCCGGGGG-GGTTCCSC-EEECCSSC-CCCCC-GGGHHHH
T ss_pred ccCCCccEEECCCCc-cCccChhhh-ccccCCCEEECCCCccCcCChh-HhCccccc-EEECcCCc-ccccC-HhhcccC
Confidence 789999999999864 433222222 3455999999988888875443 34578889 99999875 33222 2222357
Q ss_pred CCcceEecccccc
Q 015721 384 PQCCKVNFAGCLF 396 (402)
Q Consensus 384 p~l~~l~~~~~~~ 396 (402)
++++.++++||+-
T Consensus 547 ~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 547 SQQRTINLRQNPL 559 (606)
T ss_dssp HTSSEEECTTCCE
T ss_pred CCCCEEeCCCCCc
Confidence 8889999999874
No 25
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.62 E-value=9.5e-17 Score=144.25 Aligned_cols=289 Identities=13% Similarity=0.144 Sum_probs=191.4
Q ss_pred hcCcceEEeccCCcCCCCCCCCChhhHHHHHhhCCCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCCCCcChHHHH
Q 015721 64 RFSRLVELDLSQSVSRSFYPGVTDSDLAVIADGFKSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLTDKGLS 143 (402)
Q Consensus 64 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 143 (402)
.+++++.++++++.. ..+... +...+++|++|+++++. +.......+ ..+++|++|+++++. +... .+
T Consensus 43 ~l~~l~~l~l~~~~l----~~l~~~----~~~~l~~L~~L~L~~n~-i~~~~~~~~-~~l~~L~~L~L~~n~-l~~~-~~ 110 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTM----RKLPAA----LLDSFRQVELLNLNDLQ-IEEIDTYAF-AYAHTIQKLYMGFNA-IRYL-PP 110 (390)
T ss_dssp GGCCCSEEEEESCEE----SEECTH----HHHHCCCCSEEECTTSC-CCEECTTTT-TTCTTCCEEECCSSC-CCCC-CT
T ss_pred ccCCceEEEecCCch----hhCChh----HhcccccCcEEECCCCc-ccccChhhc-cCCCCcCEEECCCCC-CCcC-CH
Confidence 467899999987642 233222 22568999999999864 544332233 568999999999875 4432 12
Q ss_pred HHHhcCccCcEEecCCCccCChHHHHHHHHhCCCCcEEecCCCCCCchHHHHHHHhcCCCCCEEccCCCCCCCcccHHHH
Q 015721 144 AVAEGCQDLRSLHLAGCKSVTDGTLQALSKNCRNLEELGLLGCTSISDSGVIDLVNGCQNIKFLDLNKCSNIGDNGISSV 223 (402)
Q Consensus 144 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 223 (402)
..+..+++|++|+++++. +.. ....++..+++|++|+++++ .+... ....+..+++|++|+++++. +....
T Consensus 111 ~~~~~l~~L~~L~L~~n~-l~~-l~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~---- 181 (390)
T 3o6n_A 111 HVFQNVPLLTVLVLERND-LSS-LPRGIFHNTPKLTTLSMSNN-NLERI-EDDTFQATTSLQNLQLSSNR-LTHVD---- 181 (390)
T ss_dssp TTTTTCTTCCEEECCSSC-CCC-CCTTTTTTCTTCCEEECCSS-CCCBC-CTTTTSSCTTCCEEECCSSC-CSBCC----
T ss_pred HHhcCCCCCCEEECCCCc-cCc-CCHHHhcCCCCCcEEECCCC-ccCcc-ChhhccCCCCCCEEECCCCc-CCccc----
Confidence 334678999999999874 322 12223355899999999985 33321 12345678999999999854 33322
Q ss_pred HhcCCCCCEEEecCCCCCChHHHHHHHHhCCCCcEEEecCCCCCChHHHHHHHHHhcCCCcEEEccCCCCCChHHHHHHH
Q 015721 224 SKSCSSLKTLKLLDCYKVGDKSILSLAKFCKNLETLIIGGCRDISDESIKHLAASCKSSLKNLRMDWCLNISDSSLSCIL 303 (402)
Q Consensus 224 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~l~~~l 303 (402)
...+++|+.|+++++. +... ...++|+.|+++++. +.... ...+++|+.|+++++ .+++. ..+
T Consensus 182 ~~~l~~L~~L~l~~n~-l~~~------~~~~~L~~L~l~~n~-l~~~~-----~~~~~~L~~L~l~~n-~l~~~---~~l 244 (390)
T 3o6n_A 182 LSLIPSLFHANVSYNL-LSTL------AIPIAVEELDASHNS-INVVR-----GPVNVELTILKLQHN-NLTDT---AWL 244 (390)
T ss_dssp GGGCTTCSEEECCSSC-CSEE------ECCSSCSEEECCSSC-CCEEE-----CCCCSSCCEEECCSS-CCCCC---GGG
T ss_pred cccccccceeeccccc-cccc------CCCCcceEEECCCCe-eeecc-----ccccccccEEECCCC-CCccc---HHH
Confidence 3367899999998753 3221 124689999998864 32211 122378999999988 45432 347
Q ss_pred hcCCCCcEEeccCCCCCChHHHHHHHhccCCCcEEEEeCCCCCHHHHHHHHHhCCCCCEEeccCCCCCCHhHHHhhccCC
Q 015721 304 SQCRNLEALDIGCCEEVTDAAFQDLGEVELSLKVLKVNCPKVTVVGIGNVLEKCASLEYIDVRSCPHVTQASCEEAGLQF 383 (402)
Q Consensus 304 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~ 383 (402)
..+++|+.|+++++. ++......+ ...++|+.|+++.+.++... .....+++|+.|++++|. +.. ....+ ..+
T Consensus 245 ~~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~--~~~~~l~~L~~L~L~~n~-l~~-~~~~~-~~l 317 (390)
T 3o6n_A 245 LNYPGLVEVDLSYNE-LEKIMYHPF-VKMQRLERLYISNNRLVALN--LYGQPIPTLKVLDLSHNH-LLH-VERNQ-PQF 317 (390)
T ss_dssp GGCTTCSEEECCSSC-CCEEESGGG-TTCSSCCEEECCSSCCCEEE--CSSSCCTTCCEEECCSSC-CCC-CGGGH-HHH
T ss_pred cCCCCccEEECCCCc-CCCcChhHc-cccccCCEEECCCCcCcccC--cccCCCCCCCEEECCCCc-cee-cCccc-ccc
Confidence 899999999999864 443322222 34559999999778887632 223568999999999985 431 11222 368
Q ss_pred CCcceEeccccccC
Q 015721 384 PQCCKVNFAGCLFE 397 (402)
Q Consensus 384 p~l~~l~~~~~~~~ 397 (402)
++++.+++++|...
T Consensus 318 ~~L~~L~L~~N~i~ 331 (390)
T 3o6n_A 318 DRLENLYLDHNSIV 331 (390)
T ss_dssp TTCSEEECCSSCCC
T ss_pred CcCCEEECCCCccc
Confidence 99999999998753
No 26
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.61 E-value=3.9e-16 Score=146.92 Aligned_cols=310 Identities=19% Similarity=0.139 Sum_probs=156.0
Q ss_pred CcceEEeccCCcCCCCCCCCChhhHHHHHhhCCCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCCCCcChHHHHHH
Q 015721 66 SRLVELDLSQSVSRSFYPGVTDSDLAVIADGFKSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLTDKGLSAV 145 (402)
Q Consensus 66 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 145 (402)
+++++|+++++... .+....+ ..+++|++|+++++. +.......+ ..+++|++|+++++. +... .+..
T Consensus 26 ~~L~~L~Ls~n~l~----~~~~~~~----~~l~~L~~L~Ls~n~-i~~~~~~~~-~~l~~L~~L~Ls~n~-l~~~-~~~~ 93 (549)
T 2z81_A 26 AAMKSLDLSFNKIT----YIGHGDL----RACANLQVLILKSSR-INTIEGDAF-YSLGSLEHLDLSDNH-LSSL-SSSW 93 (549)
T ss_dssp TTCCEEECCSSCCC----EECSSTT----SSCTTCCEEECTTSC-CCEECTTTT-TTCTTCCEEECTTSC-CCSC-CHHH
T ss_pred CCccEEECcCCccC----ccChhhh----hcCCcccEEECCCCC-cCccChhhc-cccccCCEEECCCCc-cCcc-CHHH
Confidence 56788888776432 1111111 356778888887754 443222222 456778888887765 4332 2233
Q ss_pred HhcCccCcEEecCCCccCChHHHHHHHHhCCCCcEEecCCCCCCchHHHHHHHhcCCCCCEEccCCCCCCCcccHHHHHh
Q 015721 146 AEGCQDLRSLHLAGCKSVTDGTLQALSKNCRNLEELGLLGCTSISDSGVIDLVNGCQNIKFLDLNKCSNIGDNGISSVSK 225 (402)
Q Consensus 146 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 225 (402)
+..+++|++|+++++.. .....+.....+++|++|+++++..+... ....+..+++|++|+++++.. ... .+....
T Consensus 94 ~~~l~~L~~L~Ls~n~l-~~~~~~~~~~~l~~L~~L~L~~n~~~~~~-~~~~~~~l~~L~~L~L~~n~l-~~~-~~~~l~ 169 (549)
T 2z81_A 94 FGPLSSLKYLNLMGNPY-QTLGVTSLFPNLTNLQTLRIGNVETFSEI-RRIDFAGLTSLNELEIKALSL-RNY-QSQSLK 169 (549)
T ss_dssp HTTCTTCCEEECTTCCC-SSSCSSCSCTTCTTCCEEEEEESSSCCEE-CTTTTTTCCEEEEEEEEETTC-CEE-CTTTTT
T ss_pred hccCCCCcEEECCCCcc-cccchhhhhhccCCccEEECCCCcccccc-CHhhhhcccccCeeeccCCcc-ccc-Chhhhh
Confidence 45677888888877632 21111122344777777777764322221 112345567777777766432 211 122222
Q ss_pred cCCCCCEEEecCCCCCChHHHHHHHHhCCCCcEEEecCCC--------------------------CCChHHHHHHHHH-
Q 015721 226 SCSSLKTLKLLDCYKVGDKSILSLAKFCKNLETLIIGGCR--------------------------DISDESIKHLAAS- 278 (402)
Q Consensus 226 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--------------------------~~~~~~~~~l~~~- 278 (402)
.+++|++|++..+.. ... .......+++|+.|+++++. .+++.....+...
T Consensus 170 ~l~~L~~L~l~~n~~-~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~ 247 (549)
T 2z81_A 170 SIRDIHHLTLHLSES-AFL-LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLL 247 (549)
T ss_dssp TCSEEEEEEEECSBS-TTH-HHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGG
T ss_pred ccccCceEecccCcc-ccc-chhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHh
Confidence 445555555554322 111 11122334555555554432 2223333333211
Q ss_pred -hcCCCcEEEccCCCCCC-----------------------------h----HHHHHHHhcCCCCcEEeccCCCCCChHH
Q 015721 279 -CKSSLKNLRMDWCLNIS-----------------------------D----SSLSCILSQCRNLEALDIGCCEEVTDAA 324 (402)
Q Consensus 279 -~~~~L~~L~l~~~~~~~-----------------------------~----~~l~~~l~~~~~L~~L~l~~~~~~~~~~ 324 (402)
..++|+.+++++|.... . ..+..+....++|+.|+++++. ++. .
T Consensus 248 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~-l~~-i 325 (549)
T 2z81_A 248 RYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFL-V 325 (549)
T ss_dssp GGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC-CCC-C
T ss_pred hhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc-ccc-C
Confidence 12445555554431000 0 0001112234556666666533 221 1
Q ss_pred HHHHHhccCCCcEEEEeCCCCCHHHHHH--HHHhCCCCCEEeccCCCCCCHhHHHhhccCCCCcceEeccccc
Q 015721 325 FQDLGEVELSLKVLKVNCPKVTVVGIGN--VLEKCASLEYIDVRSCPHVTQASCEEAGLQFPQCCKVNFAGCL 395 (402)
Q Consensus 325 ~~~~~~~~~~L~~L~l~~~~~~~~~l~~--~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~p~l~~l~~~~~~ 395 (402)
...+...+++|+.|+++.+.++...... .+..+++|+.|++++|.--.-.........+++++.+++++|.
T Consensus 326 p~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~ 398 (549)
T 2z81_A 326 PCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT 398 (549)
T ss_dssp CHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCC
T ss_pred CHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCC
Confidence 1223334568999999777887644322 2356889999999887543322222333468899999998884
No 27
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.61 E-value=1.6e-16 Score=154.50 Aligned_cols=166 Identities=15% Similarity=0.083 Sum_probs=90.4
Q ss_pred HHHhcCcceEEeccCCcCCCC--CCCCChh-------hHHHH--HhhCCCCCEEEccCCCCCChhHHHHHHhcCCCCCeE
Q 015721 61 IAARFSRLVELDLSQSVSRSF--YPGVTDS-------DLAVI--ADGFKSLKLLNLQNCKGITDAGIASIGSGLCSLQSL 129 (402)
Q Consensus 61 ~~~~~~~l~~L~l~~~~~~~~--~~~~~~~-------~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 129 (402)
.+..+++|+.|+++++..... ....... .+..- +..+++|+.|+++++...... +.....+++|++|
T Consensus 443 ~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~i--P~~l~~L~~L~~L 520 (876)
T 4ecn_A 443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQL--PDFLYDLPELQSL 520 (876)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSC--CGGGGGCSSCCEE
T ss_pred HHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccC--hHHHhCCCCCCEE
Confidence 355778899999987754320 0000000 01111 125788888888876522221 2223567888888
Q ss_pred ecCCCCCcChHHHHHHHhcC-------ccCcEEecCCCccCChHHHHH--HHHhCCCCcEEecCCCCCCchHHHHHHHhc
Q 015721 130 DLSYCRKLTDKGLSAVAEGC-------QDLRSLHLAGCKSVTDGTLQA--LSKNCRNLEELGLLGCTSISDSGVIDLVNG 200 (402)
Q Consensus 130 ~l~~~~~~~~~~~~~~~~~~-------~~L~~L~l~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 200 (402)
+++++..++...+|..+..+ ++|+.|+++++.. . .++. ....+++|+.|+++++ .+.. ++ .+..
T Consensus 521 ~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L-~--~ip~~~~l~~L~~L~~L~Ls~N-~l~~--lp-~~~~ 593 (876)
T 4ecn_A 521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL-E--EFPASASLQKMVKLGLLDCVHN-KVRH--LE-AFGT 593 (876)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC-C--BCCCHHHHTTCTTCCEEECTTS-CCCB--CC-CCCT
T ss_pred ECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC-C--ccCChhhhhcCCCCCEEECCCC-Cccc--ch-hhcC
Confidence 88876534432344433333 4888888887643 2 2333 4455788888888774 3332 23 4555
Q ss_pred CCCCCEEccCCCCCCCcccHHHHHhcCCC-CCEEEecCC
Q 015721 201 CQNIKFLDLNKCSNIGDNGISSVSKSCSS-LKTLKLLDC 238 (402)
Q Consensus 201 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~ 238 (402)
+++|+.|+++++... . ++.....+++ |+.|+++++
T Consensus 594 L~~L~~L~Ls~N~l~-~--lp~~l~~l~~~L~~L~Ls~N 629 (876)
T 4ecn_A 594 NVKLTDLKLDYNQIE-E--IPEDFCAFTDQVEGLGFSHN 629 (876)
T ss_dssp TSEESEEECCSSCCS-C--CCTTSCEECTTCCEEECCSS
T ss_pred CCcceEEECcCCccc-c--chHHHhhccccCCEEECcCC
Confidence 677777777664322 1 2222334555 666666654
No 28
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.60 E-value=2.6e-13 Score=120.41 Aligned_cols=243 Identities=14% Similarity=0.119 Sum_probs=110.4
Q ss_pred CCCCEEEccCCCCCChhHHH---HHHhcCC-CCCeEecCCCCCcChHHHH---HHHhcC-ccCcEEecCCCccCCh---H
Q 015721 98 KSLKLLNLQNCKGITDAGIA---SIGSGLC-SLQSLDLSYCRKLTDKGLS---AVAEGC-QDLRSLHLAGCKSVTD---G 166 (402)
Q Consensus 98 ~~L~~L~l~~~~~~~~~~~~---~~~~~~~-~L~~L~l~~~~~~~~~~~~---~~~~~~-~~L~~L~l~~~~~~~~---~ 166 (402)
++|++|+++++. +++.... .....++ +|++|+++++. ++..+.. ...... ++|++|+++++. +.+ .
T Consensus 22 ~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~ 98 (362)
T 3goz_A 22 HGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNS-LGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKSSD 98 (362)
T ss_dssp TTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHH
T ss_pred CCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCC-CCHHHHHHHHHHHhccCCCccEEECcCCc-CChHHHH
Confidence 346666665543 3333321 1123344 56666665543 3332222 222222 556666666553 221 1
Q ss_pred HHHHHHHhC-CCCcEEecCCCCCCchHH---HHHHHhc-CCCCCEEccCCCCCCCcccHH---HHHhcCC-CCCEEEecC
Q 015721 167 TLQALSKNC-RNLEELGLLGCTSISDSG---VIDLVNG-CQNIKFLDLNKCSNIGDNGIS---SVSKSCS-SLKTLKLLD 237 (402)
Q Consensus 167 ~~~~~~~~~-~~L~~L~l~~~~~~~~~~---~~~~~~~-~~~L~~L~l~~~~~~~~~~~~---~~~~~~~-~L~~L~l~~ 237 (402)
.+......+ ++|++|+++++ .++... +...+.. .++|++|+++++ .+++.+.. ......+ +|++|++++
T Consensus 99 ~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 176 (362)
T 3goz_A 99 ELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQILAAIPANVNSLNLRG 176 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTT
T ss_pred HHHHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHHHHHHHHHhcCCccccEeeecC
Confidence 222222233 56666666653 233222 2222333 246666666653 23322222 2222333 666666665
Q ss_pred CCCCCh---HHHHHHHHhC-CCCcEEEecCCCCCChHHHHHHHHHh---cCCCcEEEccCCCCCCh---HHHHHHHhcCC
Q 015721 238 CYKVGD---KSILSLAKFC-KNLETLIIGGCRDISDESIKHLAASC---KSSLKNLRMDWCLNISD---SSLSCILSQCR 307 (402)
Q Consensus 238 ~~~~~~---~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~l~~~~---~~~L~~L~l~~~~~~~~---~~l~~~l~~~~ 307 (402)
+. +++ ..+....... ++|+.|+++++ .+++.....++... .++|++|+++++ .+++ ..+...+..++
T Consensus 177 n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~ 253 (362)
T 3goz_A 177 NN-LASKNCAELAKFLASIPASVTSLDLSAN-LLGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDSLK 253 (362)
T ss_dssp SC-GGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTTTT
T ss_pred CC-CchhhHHHHHHHHHhCCCCCCEEECCCC-CCChhHHHHHHHHHhcCCCCceEEECcCC-CCCcHHHHHHHHHHhcCC
Confidence 42 222 1222233334 36777777654 34443333333221 246777777665 3433 33344455666
Q ss_pred CCcEEeccCCC--CCChHHHHHHHhccC---CCcEEEEeCCCCCHH
Q 015721 308 NLEALDIGCCE--EVTDAAFQDLGEVEL---SLKVLKVNCPKVTVV 348 (402)
Q Consensus 308 ~L~~L~l~~~~--~~~~~~~~~~~~~~~---~L~~L~l~~~~~~~~ 348 (402)
+|+.|++++|. .++...+..+....+ +|+.|+++.|.+...
T Consensus 254 ~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 254 HLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp TCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred CccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 77777776643 345555555554443 344444455555543
No 29
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.60 E-value=1.2e-15 Score=139.32 Aligned_cols=253 Identities=17% Similarity=0.130 Sum_probs=153.9
Q ss_pred hcCcceEEeccCCcCCCCCCCCChhhHHHHHhhCCCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCCCCcChHHHH
Q 015721 64 RFSRLVELDLSQSVSRSFYPGVTDSDLAVIADGFKSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLTDKGLS 143 (402)
Q Consensus 64 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 143 (402)
.++++++|+++++... .+. . ...+++|++|+++++. ++... ...+++|++|+++++. +....
T Consensus 40 ~l~~L~~L~Ls~n~l~----~~~--~----l~~l~~L~~L~Ls~n~-l~~~~----~~~l~~L~~L~Ls~N~-l~~~~-- 101 (457)
T 3bz5_A 40 QLATLTSLDCHNSSIT----DMT--G----IEKLTGLTKLICTSNN-ITTLD----LSQNTNLTYLACDSNK-LTNLD-- 101 (457)
T ss_dssp HHTTCCEEECCSSCCC----CCT--T----GGGCTTCSEEECCSSC-CSCCC----CTTCTTCSEEECCSSC-CSCCC--
T ss_pred HcCCCCEEEccCCCcc----cCh--h----hcccCCCCEEEccCCc-CCeEc----cccCCCCCEEECcCCC-Cceee--
Confidence 5678899999876532 221 1 2468899999998864 55432 3567889999998875 54322
Q ss_pred HHHhcCccCcEEecCCCccCChHHHHHHHHhCCCCcEEecCCCCCCchHHHHHHHhcCCCCCEEccCCCCCCCcccHHHH
Q 015721 144 AVAEGCQDLRSLHLAGCKSVTDGTLQALSKNCRNLEELGLLGCTSISDSGVIDLVNGCQNIKFLDLNKCSNIGDNGISSV 223 (402)
Q Consensus 144 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 223 (402)
+..+++|++|+++++. +... + ...+++|++|+++++ .++.. -+..+++|++|+++++..++...
T Consensus 102 --~~~l~~L~~L~L~~N~-l~~l--~--~~~l~~L~~L~l~~N-~l~~l----~l~~l~~L~~L~l~~n~~~~~~~---- 165 (457)
T 3bz5_A 102 --VTPLTKLTYLNCDTNK-LTKL--D--VSQNPLLTYLNCARN-TLTEI----DVSHNTQLTELDCHLNKKITKLD---- 165 (457)
T ss_dssp --CTTCTTCCEEECCSSC-CSCC--C--CTTCTTCCEEECTTS-CCSCC----CCTTCTTCCEEECTTCSCCCCCC----
T ss_pred --cCCCCcCCEEECCCCc-CCee--c--CCCCCcCCEEECCCC-cccee----ccccCCcCCEEECCCCCcccccc----
Confidence 4568889999998874 3332 1 345888999998874 34432 15677888888888875555432
Q ss_pred HhcCCCCCEEEecCCCCCChHHHHHHHHhCCCCcEEEecCCCCCChHHHHHHHHHhcCCCcEEEccCCCCCChHHHHHHH
Q 015721 224 SKSCSSLKTLKLLDCYKVGDKSILSLAKFCKNLETLIIGGCRDISDESIKHLAASCKSSLKNLRMDWCLNISDSSLSCIL 303 (402)
Q Consensus 224 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~l~~~l 303 (402)
...+++|+.|+++++. +.... ...+++|+.|+++++. ++...+. . .++|++|+++++ .++. ++ +
T Consensus 166 ~~~l~~L~~L~ls~n~-l~~l~----l~~l~~L~~L~l~~N~-l~~~~l~----~-l~~L~~L~Ls~N-~l~~--ip--~ 229 (457)
T 3bz5_A 166 VTPQTQLTTLDCSFNK-ITELD----VSQNKLLNRLNCDTNN-ITKLDLN----Q-NIQLTFLDCSSN-KLTE--ID--V 229 (457)
T ss_dssp CTTCTTCCEEECCSSC-CCCCC----CTTCTTCCEEECCSSC-CSCCCCT----T-CTTCSEEECCSS-CCSC--CC--C
T ss_pred cccCCcCCEEECCCCc-cceec----cccCCCCCEEECcCCc-CCeeccc----c-CCCCCEEECcCC-cccc--cC--c
Confidence 3356788888888753 33211 3347788888887753 3332222 2 278888888877 4443 22 6
Q ss_pred hcCCCCcEEeccCCCCCChHHHHHHHhccCCCcEEEEeCCCCCHHHHHH-------HHHhCCCCCEEeccCCCCC
Q 015721 304 SQCRNLEALDIGCCEEVTDAAFQDLGEVELSLKVLKVNCPKVTVVGIGN-------VLEKCASLEYIDVRSCPHV 371 (402)
Q Consensus 304 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~-------~~~~~~~L~~L~l~~c~~~ 371 (402)
..+++|+.|+++++. ++... ...+++|+.|.+..+.++...+.. -...|++|+.|++++|+.+
T Consensus 230 ~~l~~L~~L~l~~N~-l~~~~----~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l 299 (457)
T 3bz5_A 230 TPLTQLTYFDCSVNP-LTELD----VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQL 299 (457)
T ss_dssp TTCTTCSEEECCSSC-CSCCC----CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTC
T ss_pred cccCCCCEEEeeCCc-CCCcC----HHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCccc
Confidence 678888888888754 33321 123345655555333332211100 0124567777777766543
No 30
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.60 E-value=4.3e-17 Score=158.98 Aligned_cols=109 Identities=17% Similarity=0.221 Sum_probs=55.4
Q ss_pred CCCcEEEccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhccCCCcEEEEeCCCCCHHHHHHHHHhCCCC
Q 015721 281 SSLKNLRMDWCLNISDSSLSCILSQCRNLEALDIGCCEEVTDAAFQDLGEVELSLKVLKVNCPKVTVVGIGNVLEKCASL 360 (402)
Q Consensus 281 ~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L 360 (402)
++|++|+++++ .++. .++..+..+++|+.|++++|. +....... ...+++|+.|+++.+.++.. +...+..+++|
T Consensus 418 ~~L~~L~Ls~N-~l~~-~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~-~~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~L 492 (768)
T 3rgz_A 418 SELVSLHLSFN-YLSG-TIPSSLGSLSKLRDLKLWLNM-LEGEIPQE-LMYVKTLETLILDFNDLTGE-IPSGLSNCTNL 492 (768)
T ss_dssp TTCCEEECCSS-EEES-CCCGGGGGCTTCCEEECCSSC-CCSCCCGG-GGGCTTCCEEECCSSCCCSC-CCGGGGGCTTC
T ss_pred CCCCEEECcCC-cccC-cccHHHhcCCCCCEEECCCCc-ccCcCCHH-HcCCCCceEEEecCCcccCc-CCHHHhcCCCC
Confidence 45555555544 1111 112224555666666666543 22111111 22334777777755555432 12234567778
Q ss_pred CEEeccCCCCCCHhHHHhhccCCCCcceEecccccc
Q 015721 361 EYIDVRSCPHVTQASCEEAGLQFPQCCKVNFAGCLF 396 (402)
Q Consensus 361 ~~L~l~~c~~~~~~~~~~~~~~~p~l~~l~~~~~~~ 396 (402)
+.|++++|. +.......++ .+++++.+++++|..
T Consensus 493 ~~L~L~~N~-l~~~~p~~~~-~l~~L~~L~L~~N~l 526 (768)
T 3rgz_A 493 NWISLSNNR-LTGEIPKWIG-RLENLAILKLSNNSF 526 (768)
T ss_dssp CEEECCSSC-CCSCCCGGGG-GCTTCCEEECCSSCC
T ss_pred CEEEccCCc-cCCcCChHHh-cCCCCCEEECCCCcc
Confidence 888887765 3323323333 577788888877754
No 31
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.59 E-value=6e-17 Score=151.33 Aligned_cols=59 Identities=17% Similarity=0.176 Sum_probs=31.9
Q ss_pred CCCcEEEEeCCCCCHHHHHHHHHhCCCCCEEeccCCCCCCHhHHHh-hccCCCCcceEecccccc
Q 015721 333 LSLKVLKVNCPKVTVVGIGNVLEKCASLEYIDVRSCPHVTQASCEE-AGLQFPQCCKVNFAGCLF 396 (402)
Q Consensus 333 ~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~-~~~~~p~l~~l~~~~~~~ 396 (402)
++|+.|+++.+.++. ++..+..+++|+.|++++|. ++. ++. ....+++++.+++++++.
T Consensus 421 ~~L~~L~Ls~N~l~~--ip~~~~~l~~L~~L~L~~N~-l~~--l~~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 421 PRIKVLDLHSNKIKS--IPKQVVKLEALQELNVASNQ-LKS--VPDGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp TTCCEEECCSSCCCC--CCGGGGGCTTCCEEECCSSC-CCC--CCTTTTTTCTTCCEEECCSSCB
T ss_pred ccCCEEECCCCcccc--cchhhhcCCCCCEEECCCCc-CCc--cCHHHhccCCcccEEECcCCCC
Confidence 366666665555552 22223366777777777653 331 111 123466677777776654
No 32
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.59 E-value=9.7e-16 Score=143.15 Aligned_cols=107 Identities=16% Similarity=0.164 Sum_probs=52.6
Q ss_pred CCCcEEEccCCCCCCh-HHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhccCCCcEEEEeCCCCCHHHHHHHHHhC-C
Q 015721 281 SSLKNLRMDWCLNISD-SSLSCILSQCRNLEALDIGCCEEVTDAAFQDLGEVELSLKVLKVNCPKVTVVGIGNVLEKC-A 358 (402)
Q Consensus 281 ~~L~~L~l~~~~~~~~-~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~-~ 358 (402)
++|++|+++++ .++. ..++..+..+++|+.|+++++. ++...........++|+.|+++.+.++.... ..+ +
T Consensus 348 ~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N~-l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~l~~ 421 (520)
T 2z7x_B 348 TELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQNS-VSYDEKKGDCSWTKSLLSLNMSSNILTDTIF----RCLPP 421 (520)
T ss_dssp SSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSSC-CBCCGGGCSCCCCTTCCEEECCSSCCCGGGG----GSCCT
T ss_pred CCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCCc-CCcccccchhccCccCCEEECcCCCCCcchh----hhhcc
Confidence 45556665555 2322 2233345556666666666533 2211111111223466666665555543211 122 5
Q ss_pred CCCEEeccCCCCCCHhHHHhhccCCCCcceEecccccc
Q 015721 359 SLEYIDVRSCPHVTQASCEEAGLQFPQCCKVNFAGCLF 396 (402)
Q Consensus 359 ~L~~L~l~~c~~~~~~~~~~~~~~~p~l~~l~~~~~~~ 396 (402)
+|+.|++++|. ++ .....+. .+++++.+++++|..
T Consensus 422 ~L~~L~Ls~N~-l~-~ip~~~~-~l~~L~~L~L~~N~l 456 (520)
T 2z7x_B 422 RIKVLDLHSNK-IK-SIPKQVV-KLEALQELNVASNQL 456 (520)
T ss_dssp TCCEEECCSSC-CC-CCCGGGG-GCTTCCEEECCSSCC
T ss_pred cCCEEECCCCc-cc-ccchhhh-cCCCCCEEECCCCcC
Confidence 77777777753 33 2222233 677888888877753
No 33
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.58 E-value=3.4e-16 Score=148.35 Aligned_cols=289 Identities=14% Similarity=0.149 Sum_probs=192.3
Q ss_pred hcCcceEEeccCCcCCCCCCCCChhhHHHHHhhCCCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCCCCcChHHHH
Q 015721 64 RFSRLVELDLSQSVSRSFYPGVTDSDLAVIADGFKSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLTDKGLS 143 (402)
Q Consensus 64 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 143 (402)
.+++++.+++.++. ...+... +...+++|+.|+++++. +.......+ ..+++|++|+++++. +... .+
T Consensus 49 ~l~~l~~l~l~~~~----l~~lp~~----~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~L~~n~-l~~~-~~ 116 (597)
T 3oja_B 49 TLNNQKIVTFKNST----MRKLPAA----LLDSFRQVELLNLNDLQ-IEEIDTYAF-AYAHTIQKLYMGFNA-IRYL-PP 116 (597)
T ss_dssp GGCCCSEEEESSCE----ESEECTH----HHHHCCCCSEEECTTSC-CCEECTTTT-TTCTTCCEEECCSSC-CCCC-CT
T ss_pred cCCCceEEEeeCCC----CCCcCHH----HHccCCCCcEEECCCCC-CCCCChHHh-cCCCCCCEEECCCCc-CCCC-CH
Confidence 35678888888764 2233222 23568999999999865 554332233 568999999999876 4432 22
Q ss_pred HHHhcCccCcEEecCCCccCChHHHHHHHHhCCCCcEEecCCCCCCchHHHHHHHhcCCCCCEEccCCCCCCCcccHHHH
Q 015721 144 AVAEGCQDLRSLHLAGCKSVTDGTLQALSKNCRNLEELGLLGCTSISDSGVIDLVNGCQNIKFLDLNKCSNIGDNGISSV 223 (402)
Q Consensus 144 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 223 (402)
..+..+++|+.|+++++. +.. ....++..+++|+.|+++++ .+... .+..+..+++|+.|+++++. +....
T Consensus 117 ~~~~~l~~L~~L~L~~n~-l~~-l~~~~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~L~~N~-l~~~~---- 187 (597)
T 3oja_B 117 HVFQNVPLLTVLVLERND-LSS-LPRGIFHNTPKLTTLSMSNN-NLERI-EDDTFQATTSLQNLQLSSNR-LTHVD---- 187 (597)
T ss_dssp TTTTTCTTCCEEECCSSC-CCC-CCTTTTTTCTTCCEEECCSS-CCCBC-CTTTTTTCTTCCEEECTTSC-CSBCC----
T ss_pred HHHcCCCCCCEEEeeCCC-CCC-CCHHHhccCCCCCEEEeeCC-cCCCC-ChhhhhcCCcCcEEECcCCC-CCCcC----
Confidence 334678999999999874 332 12233456899999999985 33321 22346778999999999854 33322
Q ss_pred HhcCCCCCEEEecCCCCCChHHHHHHHHhCCCCcEEEecCCCCCChHHHHHHHHHhcCCCcEEEccCCCCCChHHHHHHH
Q 015721 224 SKSCSSLKTLKLLDCYKVGDKSILSLAKFCKNLETLIIGGCRDISDESIKHLAASCKSSLKNLRMDWCLNISDSSLSCIL 303 (402)
Q Consensus 224 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~l~~~l 303 (402)
...+++|+.|+++++. +... ...++|+.|+++++. +... ....+++|+.|+++++ .+++. ..+
T Consensus 188 ~~~l~~L~~L~l~~n~-l~~l------~~~~~L~~L~ls~n~-l~~~-----~~~~~~~L~~L~L~~n-~l~~~---~~l 250 (597)
T 3oja_B 188 LSLIPSLFHANVSYNL-LSTL------AIPIAVEELDASHNS-INVV-----RGPVNVELTILKLQHN-NLTDT---AWL 250 (597)
T ss_dssp GGGCTTCSEEECCSSC-CSEE------ECCTTCSEEECCSSC-CCEE-----ECSCCSCCCEEECCSS-CCCCC---GGG
T ss_pred hhhhhhhhhhhcccCc-cccc------cCCchhheeeccCCc-cccc-----ccccCCCCCEEECCCC-CCCCC---hhh
Confidence 3467899999998853 3221 235689999998864 2211 1122378999999988 45532 347
Q ss_pred hcCCCCcEEeccCCCCCChHHHHHHHhccCCCcEEEEeCCCCCHHHHHHHHHhCCCCCEEeccCCCCCCHhHHHhhccCC
Q 015721 304 SQCRNLEALDIGCCEEVTDAAFQDLGEVELSLKVLKVNCPKVTVVGIGNVLEKCASLEYIDVRSCPHVTQASCEEAGLQF 383 (402)
Q Consensus 304 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~ 383 (402)
..+++|+.|+++++. ++......+ ..+++|+.|+++.+.++.. ......+|+|+.|++++|.-.. ++.....+
T Consensus 251 ~~l~~L~~L~Ls~N~-l~~~~~~~~-~~l~~L~~L~Ls~N~l~~l--~~~~~~l~~L~~L~Ls~N~l~~---i~~~~~~l 323 (597)
T 3oja_B 251 LNYPGLVEVDLSYNE-LEKIMYHPF-VKMQRLERLYISNNRLVAL--NLYGQPIPTLKVLDLSHNHLLH---VERNQPQF 323 (597)
T ss_dssp GGCTTCSEEECCSSC-CCEEESGGG-TTCSSCCEEECTTSCCCEE--ECSSSCCTTCCEEECCSSCCCC---CGGGHHHH
T ss_pred ccCCCCCEEECCCCc-cCCCCHHHh-cCccCCCEEECCCCCCCCC--CcccccCCCCcEEECCCCCCCc---cCcccccC
Confidence 899999999999854 443322223 3455999999977888763 2233468999999999976431 22222368
Q ss_pred CCcceEeccccccC
Q 015721 384 PQCCKVNFAGCLFE 397 (402)
Q Consensus 384 p~l~~l~~~~~~~~ 397 (402)
|++..+++++|...
T Consensus 324 ~~L~~L~L~~N~l~ 337 (597)
T 3oja_B 324 DRLENLYLDHNSIV 337 (597)
T ss_dssp TTCSEEECCSSCCC
T ss_pred CCCCEEECCCCCCC
Confidence 99999999998753
No 34
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.57 E-value=7.2e-17 Score=153.87 Aligned_cols=312 Identities=12% Similarity=0.085 Sum_probs=156.2
Q ss_pred HHHhcCcceEEeccCCcCCCC--CCCCChh---h----HHHHHh--hCCCCCEEEccCCCCCChhHHHHHHhcCCCCCeE
Q 015721 61 IAARFSRLVELDLSQSVSRSF--YPGVTDS---D----LAVIAD--GFKSLKLLNLQNCKGITDAGIASIGSGLCSLQSL 129 (402)
Q Consensus 61 ~~~~~~~l~~L~l~~~~~~~~--~~~~~~~---~----~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 129 (402)
.+..+++|++|+++++..... ....... . +..... .+++|++|+++++.... .. +.....+++|++|
T Consensus 201 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~-~~-p~~l~~l~~L~~L 278 (636)
T 4eco_A 201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT-KL-PTFLKALPEMQLI 278 (636)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCS-SC-CTTTTTCSSCCEE
T ss_pred HHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCc-cC-hHHHhcCCCCCEE
Confidence 355788999999998754320 0000000 0 111112 57889999998865222 11 2223567889999
Q ss_pred ecCCCCCcChHHHHHHHhcC------ccCcEEecCCCccCChHHHHH--HHHhCCCCcEEecCCCCCCc-hHHHHHHHhc
Q 015721 130 DLSYCRKLTDKGLSAVAEGC------QDLRSLHLAGCKSVTDGTLQA--LSKNCRNLEELGLLGCTSIS-DSGVIDLVNG 200 (402)
Q Consensus 130 ~l~~~~~~~~~~~~~~~~~~------~~L~~L~l~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~ 200 (402)
+++++..++...++..+..+ ++|++|+++++.. . .++. ....+++|+.|+++++. +. . ++ .+..
T Consensus 279 ~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l-~--~ip~~~~l~~l~~L~~L~L~~N~-l~g~--ip-~~~~ 351 (636)
T 4eco_A 279 NVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL-K--TFPVETSLQKMKKLGMLECLYNQ-LEGK--LP-AFGS 351 (636)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC-S--SCCCHHHHTTCTTCCEEECCSCC-CEEE--CC-CCEE
T ss_pred ECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC-C--ccCchhhhccCCCCCEEeCcCCc-Cccc--hh-hhCC
Confidence 99887535542344444443 8888888888643 3 2333 45568888888888743 33 2 12 3344
Q ss_pred CCCCCEEccCCCCCCCcccHHHHHhcCCC-CCEEEecCCCC------------------------CChHHHHHHHH----
Q 015721 201 CQNIKFLDLNKCSNIGDNGISSVSKSCSS-LKTLKLLDCYK------------------------VGDKSILSLAK---- 251 (402)
Q Consensus 201 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~------------------------~~~~~~~~~~~---- 251 (402)
+++|+.|+++++.. . .++.....+++ |++|+++++.. +... .+....
T Consensus 352 l~~L~~L~L~~N~l-~--~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~~~~ 427 (636)
T 4eco_A 352 EIKLASLNLAYNQI-T--EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSV-DGKNFDPLDP 427 (636)
T ss_dssp EEEESEEECCSSEE-E--ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTT-TTCSSCTTCS
T ss_pred CCCCCEEECCCCcc-c--cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCc-chhhhccccc
Confidence 45566666655321 1 12222233444 55555544321 1100 000000
Q ss_pred ---hCCCCcEEEecCCCCCChHHHHHHHHHhcCCCcEEEccCCCCCChHHHHH-HHh-------cCCCCcEEeccCCCCC
Q 015721 252 ---FCKNLETLIIGGCRDISDESIKHLAASCKSSLKNLRMDWCLNISDSSLSC-ILS-------QCRNLEALDIGCCEEV 320 (402)
Q Consensus 252 ---~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~l~~-~l~-------~~~~L~~L~l~~~~~~ 320 (402)
.+++|+.|+++++. ++.. ...+...+ ++|++|+++++ .++ .++. .+. .+++|+.|+++++. +
T Consensus 428 ~~~~~~~L~~L~Ls~N~-l~~l-p~~~~~~l-~~L~~L~Ls~N-~l~--~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l 500 (636)
T 4eco_A 428 TPFKGINVSSINLSNNQ-ISKF-PKELFSTG-SPLSSINLMGN-MLT--EIPKNSLKDENENFKNTYLLTSIDLRFNK-L 500 (636)
T ss_dssp SCCCCCCEEEEECCSSC-CCSC-CTHHHHTT-CCCSEEECCSS-CCS--BCCSSSSEETTEECTTGGGCCEEECCSSC-C
T ss_pred ccccCCCCCEEECcCCc-cCcC-CHHHHccC-CCCCEEECCCC-CCC--CcCHHHhccccccccccCCccEEECcCCc-C
Confidence 13355666665542 2110 00111112 66777777665 232 1111 111 12267777777643 3
Q ss_pred ChHHHHHHH-hccCCCcEEEEeCCCCCHHHHHHHHHhCCCCCEEeccCCC-----CCCHhHHHhhccCCCCcceEecccc
Q 015721 321 TDAAFQDLG-EVELSLKVLKVNCPKVTVVGIGNVLEKCASLEYIDVRSCP-----HVTQASCEEAGLQFPQCCKVNFAGC 394 (402)
Q Consensus 321 ~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~-----~~~~~~~~~~~~~~p~l~~l~~~~~ 394 (402)
+. ....+. ..+++|+.|+++.|.++. ++..+..+++|+.|++++|. .+.......+. .+++++.+++++|
T Consensus 501 ~~-lp~~~~~~~l~~L~~L~Ls~N~l~~--ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~-~l~~L~~L~Ls~N 576 (636)
T 4eco_A 501 TK-LSDDFRATTLPYLVGIDLSYNSFSK--FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGIT-LCPSLTQLQIGSN 576 (636)
T ss_dssp CB-CCGGGSTTTCTTCCEEECCSSCCSS--CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGG-GCSSCCEEECCSS
T ss_pred Cc-cChhhhhccCCCcCEEECCCCCCCC--cChhhhcCCCCCEEECCCCcccccCcccccChHHHh-cCCCCCEEECCCC
Confidence 31 111121 244577777776666664 33334567788888875533 11212222233 5778888888877
Q ss_pred cc
Q 015721 395 LF 396 (402)
Q Consensus 395 ~~ 396 (402)
..
T Consensus 577 ~l 578 (636)
T 4eco_A 577 DI 578 (636)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 35
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.57 E-value=7.8e-17 Score=153.61 Aligned_cols=298 Identities=12% Similarity=0.091 Sum_probs=170.5
Q ss_pred hcCcceEEeccCCcCCCCCCCCChhhHHHHHhhCCCCCEEEccCCCCCCh-hHHHHHH-----hcCCCCCeEecCCCCCc
Q 015721 64 RFSRLVELDLSQSVSRSFYPGVTDSDLAVIADGFKSLKLLNLQNCKGITD-AGIASIG-----SGLCSLQSLDLSYCRKL 137 (402)
Q Consensus 64 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~-----~~~~~L~~L~l~~~~~~ 137 (402)
.+++|++|+++++...... +..+ ..+++|+.|+++++..++. .....+. ..+++|++|+++++. +
T Consensus 247 ~l~~L~~L~L~~n~l~~~~----p~~l----~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l 317 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKL----PTFL----KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-L 317 (636)
T ss_dssp GCTTCCEEEEECCTTCSSC----CTTT----TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-C
T ss_pred ccCCCCEEEecCCcCCccC----hHHH----hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-C
Confidence 6788999999987532211 1111 3578888888888653554 2222222 123788888888765 4
Q ss_pred ChHHHHH--HHhcCccCcEEecCCCccCChHHHHHHHHhCCCCcEEecCCCCCCchHHHHHHHhcCC-------------
Q 015721 138 TDKGLSA--VAEGCQDLRSLHLAGCKSVTDGTLQALSKNCRNLEELGLLGCTSISDSGVIDLVNGCQ------------- 202 (402)
Q Consensus 138 ~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~------------- 202 (402)
. .++. .+..+++|++|+++++..... ++ ....+++|+.|+++++ .+. .++..+..++
T Consensus 318 ~--~ip~~~~l~~l~~L~~L~L~~N~l~g~--ip-~~~~l~~L~~L~L~~N-~l~--~lp~~l~~l~~~L~~L~Ls~N~l 389 (636)
T 4eco_A 318 K--TFPVETSLQKMKKLGMLECLYNQLEGK--LP-AFGSEIKLASLNLAYN-QIT--EIPANFCGFTEQVENLSFAHNKL 389 (636)
T ss_dssp S--SCCCHHHHTTCTTCCEEECCSCCCEEE--CC-CCEEEEEESEEECCSS-EEE--ECCTTSEEECTTCCEEECCSSCC
T ss_pred C--ccCchhhhccCCCCCEEeCcCCcCccc--hh-hhCCCCCCCEEECCCC-ccc--cccHhhhhhcccCcEEEccCCcC
Confidence 4 2333 556778888888877632201 11 2223445555555542 222 1222233334
Q ss_pred -------------CCCEEccCCCCCCCcccHHHHHh-------cCCCCCEEEecCCCCCChHHHHHHHHhCCCCcEEEec
Q 015721 203 -------------NIKFLDLNKCSNIGDNGISSVSK-------SCSSLKTLKLLDCYKVGDKSILSLAKFCKNLETLIIG 262 (402)
Q Consensus 203 -------------~L~~L~l~~~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 262 (402)
+|+.|+++++..... .+.... .+++|++|+++++. +... ...+...+++|+.|+++
T Consensus 390 ~~lp~~~~~~~l~~L~~L~Ls~N~l~~~--~p~~l~~~~~~~~~~~~L~~L~Ls~N~-l~~l-p~~~~~~l~~L~~L~Ls 465 (636)
T 4eco_A 390 KYIPNIFDAKSVSVMSAIDFSYNEIGSV--DGKNFDPLDPTPFKGINVSSINLSNNQ-ISKF-PKELFSTGSPLSSINLM 465 (636)
T ss_dssp SSCCSCCCTTCSSCEEEEECCSSCTTTT--TTCSSCTTCSSCCCCCCEEEEECCSSC-CCSC-CTHHHHTTCCCSEEECC
T ss_pred cccchhhhhcccCccCEEECcCCcCCCc--chhhhcccccccccCCCCCEEECcCCc-cCcC-CHHHHccCCCCCEEECC
Confidence 455555544322111 011111 34578999998854 3321 12345558999999998
Q ss_pred CCCCCChHHHHHHHHHh------cCCCcEEEccCCCCCChHHHHHHHh--cCCCCcEEeccCCCCCChHHHHHHHhccCC
Q 015721 263 GCRDISDESIKHLAASC------KSSLKNLRMDWCLNISDSSLSCILS--QCRNLEALDIGCCEEVTDAAFQDLGEVELS 334 (402)
Q Consensus 263 ~~~~~~~~~~~~l~~~~------~~~L~~L~l~~~~~~~~~~l~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 334 (402)
++. ++......+ ... .++|+.|+++++ .++ .++..+. .+++|+.|+++++. ++. ++.....+++
T Consensus 466 ~N~-l~~i~~~~~-~~~~~~~~~l~~L~~L~Ls~N-~l~--~lp~~~~~~~l~~L~~L~Ls~N~-l~~--ip~~~~~l~~ 537 (636)
T 4eco_A 466 GNM-LTEIPKNSL-KDENENFKNTYLLTSIDLRFN-KLT--KLSDDFRATTLPYLVGIDLSYNS-FSK--FPTQPLNSST 537 (636)
T ss_dssp SSC-CSBCCSSSS-EETTEECTTGGGCCEEECCSS-CCC--BCCGGGSTTTCTTCCEEECCSSC-CSS--CCCGGGGCSS
T ss_pred CCC-CCCcCHHHh-ccccccccccCCccEEECcCC-cCC--ccChhhhhccCCCcCEEECCCCC-CCC--cChhhhcCCC
Confidence 864 331100000 000 028999999987 455 3444454 89999999999855 433 2222334669
Q ss_pred CcEEEEe------CCCCCHHHHHHHHHhCCCCCEEeccCCCCCCHhHHHhhccCCCCcceEecccccc
Q 015721 335 LKVLKVN------CPKVTVVGIGNVLEKCASLEYIDVRSCPHVTQASCEEAGLQFPQCCKVNFAGCLF 396 (402)
Q Consensus 335 L~~L~l~------~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~p~l~~l~~~~~~~ 396 (402)
|+.|++. .+.+... ++..+..+++|+.|++++|.- . .++.. -.++++.+++++|+.
T Consensus 538 L~~L~Ls~N~~ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l-~--~ip~~--~~~~L~~L~Ls~N~l 599 (636)
T 4eco_A 538 LKGFGIRNQRDAQGNRTLRE-WPEGITLCPSLTQLQIGSNDI-R--KVNEK--ITPNISVLDIKDNPN 599 (636)
T ss_dssp CCEEECCSCBCTTCCBCCCC-CCTTGGGCSSCCEEECCSSCC-C--BCCSC--CCTTCCEEECCSCTT
T ss_pred CCEEECCCCcccccCccccc-ChHHHhcCCCCCEEECCCCcC-C--ccCHh--HhCcCCEEECcCCCC
Confidence 9999993 3333321 223346799999999999764 2 22222 238999999999975
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.56 E-value=1.1e-16 Score=147.82 Aligned_cols=291 Identities=18% Similarity=0.202 Sum_probs=185.2
Q ss_pred HHHhcCcceEEeccCCcCCCCCCCCChhhHHHHHhhCCCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCCCCcChH
Q 015721 61 IAARFSRLVELDLSQSVSRSFYPGVTDSDLAVIADGFKSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLTDK 140 (402)
Q Consensus 61 ~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 140 (402)
.+..+++|++|+++++... .+....+ ..+++|++|+++++. +...... ....+++|++|+++++. +...
T Consensus 51 ~~~~l~~L~~L~L~~n~i~----~~~~~~~----~~l~~L~~L~L~~n~-l~~~~~~-~~~~l~~L~~L~Ls~n~-i~~~ 119 (477)
T 2id5_A 51 EFASFPHLEELELNENIVS----AVEPGAF----NNLFNLRTLGLRSNR-LKLIPLG-VFTGLSNLTKLDISENK-IVIL 119 (477)
T ss_dssp TTTTCTTCCEEECTTSCCC----EECTTTT----TTCTTCCEEECCSSC-CCSCCTT-SSTTCTTCCEEECTTSC-CCEE
T ss_pred HccCCCCCCEEECCCCccC----EeChhhh----hCCccCCEEECCCCc-CCccCcc-cccCCCCCCEEECCCCc-cccC
Confidence 3457889999999987532 2222222 468999999999854 4433222 22568999999999875 4321
Q ss_pred HHHHHHhcCccCcEEecCCCccCChHHHHHHHHhCCCCcEEecCCCCCCchHHHHHHHhcCCCCCEEccCCCCCCCcccH
Q 015721 141 GLSAVAEGCQDLRSLHLAGCKSVTDGTLQALSKNCRNLEELGLLGCTSISDSGVIDLVNGCQNIKFLDLNKCSNIGDNGI 220 (402)
Q Consensus 141 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 220 (402)
.+..+..+++|++|++.++.. .... ...+..+++|++|+++++ .++.. ....+..+++|+.|+++++.. ... .
T Consensus 120 -~~~~~~~l~~L~~L~l~~n~l-~~~~-~~~~~~l~~L~~L~l~~n-~l~~~-~~~~l~~l~~L~~L~l~~n~i-~~~-~ 192 (477)
T 2id5_A 120 -LDYMFQDLYNLKSLEVGDNDL-VYIS-HRAFSGLNSLEQLTLEKC-NLTSI-PTEALSHLHGLIVLRLRHLNI-NAI-R 192 (477)
T ss_dssp -CTTTTTTCTTCCEEEECCTTC-CEEC-TTSSTTCTTCCEEEEESC-CCSSC-CHHHHTTCTTCCEEEEESCCC-CEE-C
T ss_pred -ChhHccccccCCEEECCCCcc-ceeC-hhhccCCCCCCEEECCCC-cCccc-ChhHhcccCCCcEEeCCCCcC-cEe-C
Confidence 123346789999999998642 2211 122345899999999985 34331 234577889999999988543 221 1
Q ss_pred HHHHhcCCCCCEEEecCCCCCChHHHHHHHHhCCCCcEEEecCCCCCChHHHHHHHHHhcCCCcEEEccCCCCCChHHHH
Q 015721 221 SSVSKSCSSLKTLKLLDCYKVGDKSILSLAKFCKNLETLIIGGCRDISDESIKHLAASCKSSLKNLRMDWCLNISDSSLS 300 (402)
Q Consensus 221 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~l~ 300 (402)
......+++|+.|+++++....... .... ...+|++|+++++. ++......+ ..+ ++|+.|+++++ .++.. ..
T Consensus 193 ~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~-~~~~L~~L~l~~n~-l~~~~~~~~-~~l-~~L~~L~Ls~n-~l~~~-~~ 265 (477)
T 2id5_A 193 DYSFKRLYRLKVLEISHWPYLDTMT-PNCL-YGLNLTSLSITHCN-LTAVPYLAV-RHL-VYLRFLNLSYN-PISTI-EG 265 (477)
T ss_dssp TTCSCSCTTCCEEEEECCTTCCEEC-TTTT-TTCCCSEEEEESSC-CCSCCHHHH-TTC-TTCCEEECCSS-CCCEE-CT
T ss_pred hhhcccCcccceeeCCCCccccccC-cccc-cCccccEEECcCCc-ccccCHHHh-cCc-cccCeeECCCC-cCCcc-Ch
Confidence 2233467899999999865443211 1111 24589999998864 332222222 222 89999999987 34321 12
Q ss_pred HHHhcCCCCcEEeccCCCCCChHHHHHHHhccCCCcEEEEeCCCCCHHHHHHHHHhCCCCCEEeccCCCCCCHhHHHhh
Q 015721 301 CILSQCRNLEALDIGCCEEVTDAAFQDLGEVELSLKVLKVNCPKVTVVGIGNVLEKCASLEYIDVRSCPHVTQASCEEA 379 (402)
Q Consensus 301 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~ 379 (402)
..+..+++|+.|+++++. ++......+ ..+++|+.|+++.+.++.... ..+..+++|+.|++++++...+-.+.++
T Consensus 266 ~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~c~c~~~~~ 341 (477)
T 2id5_A 266 SMLHELLRLQEIQLVGGQ-LAVVEPYAF-RGLNYLRVLNVSGNQLTTLEE-SVFHSVGNLETLILDSNPLACDCRLLWV 341 (477)
T ss_dssp TSCTTCTTCCEEECCSSC-CSEECTTTB-TTCTTCCEEECCSSCCSCCCG-GGBSCGGGCCEEECCSSCEECSGGGHHH
T ss_pred hhccccccCCEEECCCCc-cceECHHHh-cCcccCCEEECCCCcCceeCH-hHcCCCcccCEEEccCCCccCccchHhH
Confidence 236788999999999854 433222222 344599999997777775332 2235689999999999886655444444
No 37
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.56 E-value=3.8e-16 Score=151.91 Aligned_cols=132 Identities=17% Similarity=0.121 Sum_probs=86.4
Q ss_pred hcCcceEEeccCCcCCCCCCCCChhhHHHHHhhCCCCCEEEccCCCCCCh-hHHHHHH------hcCCCCCeEecCCCCC
Q 015721 64 RFSRLVELDLSQSVSRSFYPGVTDSDLAVIADGFKSLKLLNLQNCKGITD-AGIASIG------SGLCSLQSLDLSYCRK 136 (402)
Q Consensus 64 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~------~~~~~L~~L~l~~~~~ 136 (402)
.+++|+.|+++++... ...+..+ ..+++|+.|+++++..+.. .....+. ..+++|++|+++++.
T Consensus 489 ~L~~L~~L~Ls~N~l~----~~iP~~l----~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~- 559 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNM----TQLPDFL----YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN- 559 (876)
T ss_dssp GCTTCCEEEEESCTTC----CSCCGGG----GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-
T ss_pred cCCCCCEEECcCCCCC----ccChHHH----hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-
Confidence 7889999999987531 2222222 4689999999998653554 2222221 245699999999876
Q ss_pred cChHHHHH--HHhcCccCcEEecCCCccCChHHHHHHHHhCCCCcEEecCCCCCCchHHHHHHHhcCCC-CCEEccCCCC
Q 015721 137 LTDKGLSA--VAEGCQDLRSLHLAGCKSVTDGTLQALSKNCRNLEELGLLGCTSISDSGVIDLVNGCQN-IKFLDLNKCS 213 (402)
Q Consensus 137 ~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~ 213 (402)
+. .++. .+..+++|+.|+++++.. . .++ .+..+++|+.|+++++ .+. .++..+..+++ |+.|+++++.
T Consensus 560 L~--~ip~~~~l~~L~~L~~L~Ls~N~l-~--~lp-~~~~L~~L~~L~Ls~N-~l~--~lp~~l~~l~~~L~~L~Ls~N~ 630 (876)
T 4ecn_A 560 LE--EFPASASLQKMVKLGLLDCVHNKV-R--HLE-AFGTNVKLTDLKLDYN-QIE--EIPEDFCAFTDQVEGLGFSHNK 630 (876)
T ss_dssp CC--BCCCHHHHTTCTTCCEEECTTSCC-C--BCC-CCCTTSEESEEECCSS-CCS--CCCTTSCEECTTCCEEECCSSC
T ss_pred CC--ccCChhhhhcCCCCCEEECCCCCc-c--cch-hhcCCCcceEEECcCC-ccc--cchHHHhhccccCCEEECcCCC
Confidence 54 3444 567789999999988743 3 233 3445788888888874 343 23444566677 8888888754
No 38
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.56 E-value=8.2e-17 Score=152.27 Aligned_cols=110 Identities=12% Similarity=0.117 Sum_probs=63.6
Q ss_pred CCCcEEEccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhccCCCcEEEEeCCCCCHHHHHHHHHhCCCC
Q 015721 281 SSLKNLRMDWCLNISDSSLSCILSQCRNLEALDIGCCEEVTDAAFQDLGEVELSLKVLKVNCPKVTVVGIGNVLEKCASL 360 (402)
Q Consensus 281 ~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L 360 (402)
++|++|+++++. +.. .....+..+++|+.|++++|. +++..++.....+++|+.|+++.+.++.... ..+..+++|
T Consensus 421 ~~L~~L~l~~n~-l~~-~~~~~~~~l~~L~~L~l~~n~-l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L 496 (570)
T 2z63_A 421 RNLIYLDISHTH-TRV-AFNGIFNGLSSLEVLKMAGNS-FQENFLPDIFTELRNLTFLDLSQCQLEQLSP-TAFNSLSSL 496 (570)
T ss_dssp TTCCEEECTTSC-CEE-CCTTTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTSCCCEECT-TTTTTCTTC
T ss_pred CCCCEEeCcCCc-ccc-cchhhhhcCCcCcEEECcCCc-CccccchhhhhcccCCCEEECCCCccccCCh-hhhhcccCC
Confidence 667777777662 221 122335667778888887754 2221122223344588888886666665322 223467888
Q ss_pred CEEeccCCCCCCHhHHHhhccCCCCcceEecccccc
Q 015721 361 EYIDVRSCPHVTQASCEEAGLQFPQCCKVNFAGCLF 396 (402)
Q Consensus 361 ~~L~l~~c~~~~~~~~~~~~~~~p~l~~l~~~~~~~ 396 (402)
+.|++++|. ++... ......+++++.+++++++.
T Consensus 497 ~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 497 QVLNMASNQ-LKSVP-DGIFDRLTSLQKIWLHTNPW 530 (570)
T ss_dssp CEEECCSSC-CSCCC-TTTTTTCTTCCEEECCSSCB
T ss_pred CEEeCCCCc-CCCCC-HHHhhcccCCcEEEecCCcc
Confidence 888888864 33222 22223678888888888764
No 39
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.55 E-value=1.8e-15 Score=132.69 Aligned_cols=293 Identities=17% Similarity=0.138 Sum_probs=166.7
Q ss_pred cceEEeccCCcCCCCCCCCChhhHHHHHhhCCCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCCCCcChHHHHHHH
Q 015721 67 RLVELDLSQSVSRSFYPGVTDSDLAVIADGFKSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLTDKGLSAVA 146 (402)
Q Consensus 67 ~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 146 (402)
+++.+++++......... ..++++.|+++++. ++......+ ..+++|++|+++++. +... .+..+
T Consensus 32 ~l~~l~~~~~~l~~lp~~-----------~~~~l~~L~L~~n~-i~~~~~~~~-~~l~~L~~L~L~~n~-l~~~-~~~~~ 96 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKD-----------LPPDTALLDLQNNK-ITEIKDGDF-KNLKNLHTLILINNK-ISKI-SPGAF 96 (330)
T ss_dssp ETTEEECTTSCCCSCCCS-----------CCTTCCEEECCSSC-CCCBCTTTT-TTCTTCCEEECCSSC-CCCB-CTTTT
T ss_pred CCeEEEecCCCccccCcc-----------CCCCCeEEECCCCc-CCEeChhhh-ccCCCCCEEECCCCc-CCee-CHHHh
Confidence 467777776543221111 13678888888754 443322222 467888888888765 4321 12334
Q ss_pred hcCccCcEEecCCCccCChHHHHHHHHhCCCCcEEecCCCCCCchHHHHHHHhcCCCCCEEccCCCCCCCcccHHHHHhc
Q 015721 147 EGCQDLRSLHLAGCKSVTDGTLQALSKNCRNLEELGLLGCTSISDSGVIDLVNGCQNIKFLDLNKCSNIGDNGISSVSKS 226 (402)
Q Consensus 147 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 226 (402)
..+++|++|+++++. +.. ++. ...++|++|+++++ .+... ....+..+++|+.|+++++..............
T Consensus 97 ~~l~~L~~L~Ls~n~-l~~--l~~--~~~~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 169 (330)
T 1xku_A 97 APLVKLERLYLSKNQ-LKE--LPE--KMPKTLQELRVHEN-EITKV-RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 169 (330)
T ss_dssp TTCTTCCEEECCSSC-CSB--CCS--SCCTTCCEEECCSS-CCCBB-CHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGG
T ss_pred cCCCCCCEEECCCCc-CCc--cCh--hhcccccEEECCCC-ccccc-CHhHhcCCccccEEECCCCcCCccCcChhhccC
Confidence 567888888888763 221 111 11368888888874 33321 234567788889988887543221122333456
Q ss_pred CCCCCEEEecCCCCCChHHHHHHHHhCCCCcEEEecCCCCCChHHHHHHHHHhcCCCcEEEccCCCCCChHHHHHHHhcC
Q 015721 227 CSSLKTLKLLDCYKVGDKSILSLAKFCKNLETLIIGGCRDISDESIKHLAASCKSSLKNLRMDWCLNISDSSLSCILSQC 306 (402)
Q Consensus 227 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~l~~~l~~~ 306 (402)
+++|+.|+++++. +.. ++. ...++|+.|+++++. ++......+ .. .++|++|+++++ .++.. ....+..+
T Consensus 170 l~~L~~L~l~~n~-l~~--l~~--~~~~~L~~L~l~~n~-l~~~~~~~~-~~-l~~L~~L~Ls~n-~l~~~-~~~~~~~l 239 (330)
T 1xku_A 170 MKKLSYIRIADTN-ITT--IPQ--GLPPSLTELHLDGNK-ITKVDAASL-KG-LNNLAKLGLSFN-SISAV-DNGSLANT 239 (330)
T ss_dssp CTTCCEEECCSSC-CCS--CCS--SCCTTCSEEECTTSC-CCEECTGGG-TT-CTTCCEEECCSS-CCCEE-CTTTGGGS
T ss_pred CCCcCEEECCCCc-ccc--CCc--cccccCCEEECCCCc-CCccCHHHh-cC-CCCCCEEECCCC-cCcee-ChhhccCC
Confidence 7888888888753 221 111 013688888887753 332111111 12 278899998877 34321 11236678
Q ss_pred CCCcEEeccCCCCCChHHHHHHHhccCCCcEEEEeCCCCCHHHHHHHH-----HhCCCCCEEeccCCCCCCHhHHHhhcc
Q 015721 307 RNLEALDIGCCEEVTDAAFQDLGEVELSLKVLKVNCPKVTVVGIGNVL-----EKCASLEYIDVRSCPHVTQASCEEAGL 381 (402)
Q Consensus 307 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~-----~~~~~L~~L~l~~c~~~~~~~~~~~~~ 381 (402)
++|+.|++++|. ++ .++.....+++|+.|+++.+.++..+...+. ...+.|+.|++.++|.-.....+....
T Consensus 240 ~~L~~L~L~~N~-l~--~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~ 316 (330)
T 1xku_A 240 PHLRELHLNNNK-LV--KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR 316 (330)
T ss_dssp TTCCEEECCSSC-CS--SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGT
T ss_pred CCCCEEECCCCc-Cc--cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccc
Confidence 899999998854 33 1222223455899999977777654332221 124788899998877532222223333
Q ss_pred CCCCcceEecccc
Q 015721 382 QFPQCCKVNFAGC 394 (402)
Q Consensus 382 ~~p~l~~l~~~~~ 394 (402)
..+.+..++++++
T Consensus 317 ~~~~l~~l~L~~N 329 (330)
T 1xku_A 317 CVYVRAAVQLGNY 329 (330)
T ss_dssp TCCCGGGEEC---
T ss_pred cccceeEEEeccc
Confidence 5777888888775
No 40
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.55 E-value=9.9e-16 Score=145.88 Aligned_cols=110 Identities=17% Similarity=0.043 Sum_probs=59.1
Q ss_pred CCCcEEEccCCCCCChHH-HHHHHhcCCCCcEEeccCCCCCChHHHHHHHhccCCCcEEEEeCCCCCHHHHHHHHHhCCC
Q 015721 281 SSLKNLRMDWCLNISDSS-LSCILSQCRNLEALDIGCCEEVTDAAFQDLGEVELSLKVLKVNCPKVTVVGIGNVLEKCAS 359 (402)
Q Consensus 281 ~~L~~L~l~~~~~~~~~~-l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~ 359 (402)
++|++|+++++ .++... +...+..+++|+.|++++|. ++.. ......+++|+.|++..+.++.......+..+++
T Consensus 350 ~~L~~L~ls~n-~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 425 (606)
T 3vq2_A 350 PSLSYLDLSRN-ALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIM--SANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEK 425 (606)
T ss_dssp TTCCEEECCSS-CEEEEEECCHHHHCCSCCCEEECCSCS-EEEE--CCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTT
T ss_pred CCCCEEECcCC-ccCCCcchhhhhccCCcccEeECCCCc-cccc--hhhccCCCCCCeeECCCCccCCccChhhhhcccc
Confidence 56666666655 222110 12235567777777777644 2211 1112234477777775555443222123456788
Q ss_pred CCEEeccCCCCCCHhHHHhhccCCCCcceEecccccc
Q 015721 360 LEYIDVRSCPHVTQASCEEAGLQFPQCCKVNFAGCLF 396 (402)
Q Consensus 360 L~~L~l~~c~~~~~~~~~~~~~~~p~l~~l~~~~~~~ 396 (402)
|+.|++++|.. .......+ ..+++++.+++++|..
T Consensus 426 L~~L~l~~n~l-~~~~~~~~-~~l~~L~~L~l~~n~l 460 (606)
T 3vq2_A 426 LLYLDISYTNT-KIDFDGIF-LGLTSLNTLKMAGNSF 460 (606)
T ss_dssp CCEEECTTSCC-EECCTTTT-TTCTTCCEEECTTCEE
T ss_pred CCEEECcCCCC-Cccchhhh-cCCCCCCEEECCCCcC
Confidence 88888887653 22221222 3678888888888753
No 41
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.54 E-value=1.1e-16 Score=151.28 Aligned_cols=112 Identities=26% Similarity=0.232 Sum_probs=62.2
Q ss_pred HHhcCcceEEeccCCcCCCCCCCCChhhHHHHHhhCCCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCCCCcChHH
Q 015721 62 AARFSRLVELDLSQSVSRSFYPGVTDSDLAVIADGFKSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLTDKG 141 (402)
Q Consensus 62 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 141 (402)
+..+++|++|+++++... .+....+ ..+++|++|+++++. +.......+ ..+++|++|+++++. +....
T Consensus 48 ~~~l~~L~~L~Ls~n~i~----~i~~~~~----~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~L~~n~-l~~l~ 116 (570)
T 2z63_A 48 FFSFPELQVLDLSRCEIQ----TIEDGAY----QSLSHLSTLILTGNP-IQSLALGAF-SGLSSLQKLVAVETN-LASLE 116 (570)
T ss_dssp TTTCSSCCEEECTTCCCC----EECTTTT----TTCTTCCEEECTTCC-CCEECTTTT-TTCTTCCEEECTTSC-CCCST
T ss_pred hhCCCCceEEECCCCcCC----ccCcccc----cCchhCCEEeCcCCc-CCccCHhhh-cCccccccccccccc-cccCC
Confidence 345667777777765421 1211111 346778888877754 433222222 457778888887654 32211
Q ss_pred HHHHHhcCccCcEEecCCCccCChHHHHHHHHhCCCCcEEecCCC
Q 015721 142 LSAVAEGCQDLRSLHLAGCKSVTDGTLQALSKNCRNLEELGLLGC 186 (402)
Q Consensus 142 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 186 (402)
. ..+..+++|++|+++++.. ....++..+..+++|++|+++++
T Consensus 117 ~-~~~~~l~~L~~L~L~~n~l-~~~~lp~~~~~l~~L~~L~l~~n 159 (570)
T 2z63_A 117 N-FPIGHLKTLKELNVAHNLI-QSFKLPEYFSNLTNLEHLDLSSN 159 (570)
T ss_dssp T-CSCTTCTTCCEEECCSSCC-CCCCCCGGGGGCTTCCEEECTTS
T ss_pred C-ccccccccccEEecCCCcc-ceecChhhhcccCCCCEEeCcCC
Confidence 0 0135678888888887632 22112233445888888888874
No 42
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.52 E-value=2.8e-16 Score=149.62 Aligned_cols=272 Identities=18% Similarity=0.162 Sum_probs=165.5
Q ss_pred hhCCCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCCCCcChHHHHHHHhcCccCcEEecCCCccCChHHHHHHHHh
Q 015721 95 DGFKSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLTDKGLSAVAEGCQDLRSLHLAGCKSVTDGTLQALSKN 174 (402)
Q Consensus 95 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 174 (402)
..+++|+.|++.++. +.... . ...+++|++|+++++. +.. ++.+ .+++|++|++.++...... ....
T Consensus 282 ~~l~~L~~L~l~~~~-~~~l~--~-l~~~~~L~~L~l~~n~-l~~--lp~~--~l~~L~~L~l~~n~~~~~~----~~~~ 348 (606)
T 3vq2_A 282 HCLANVSAMSLAGVS-IKYLE--D-VPKHFKWQSLSIIRCQ-LKQ--FPTL--DLPFLKSLTLTMNKGSISF----KKVA 348 (606)
T ss_dssp GGGTTCSEEEEESCC-CCCCC--C-CCTTCCCSEEEEESCC-CSS--CCCC--CCSSCCEEEEESCSSCEEC----CCCC
T ss_pred ccCCCCCEEEecCcc-chhhh--h-ccccccCCEEEccccc-Ccc--cccC--CCCccceeeccCCcCccch----hhcc
Confidence 345677777777654 22221 2 2456778888887765 332 2222 6788888888776433322 1224
Q ss_pred CCCCcEEecCCCCCCchHH-HHHHHhcCCCCCEEccCCCCCCCcccHHHHHhcCCCCCEEEecCCCCCChHHHHHHHHhC
Q 015721 175 CRNLEELGLLGCTSISDSG-VIDLVNGCQNIKFLDLNKCSNIGDNGISSVSKSCSSLKTLKLLDCYKVGDKSILSLAKFC 253 (402)
Q Consensus 175 ~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 253 (402)
+++|++|+++++ .++... ....+..+++|++|+++++.. .. ++.....+++|+.|+++++..... ........+
T Consensus 349 l~~L~~L~ls~n-~l~~~~~~~~~~~~~~~L~~L~L~~n~l-~~--~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~l 423 (606)
T 3vq2_A 349 LPSLSYLDLSRN-ALSFSGCCSYSDLGTNSLRHLDLSFNGA-II--MSANFMGLEELQHLDFQHSTLKRV-TEFSAFLSL 423 (606)
T ss_dssp CTTCCEEECCSS-CEEEEEECCHHHHCCSCCCEEECCSCSE-EE--ECCCCTTCTTCCEEECTTSEEEST-TTTTTTTTC
T ss_pred CCCCCEEECcCC-ccCCCcchhhhhccCCcccEeECCCCcc-cc--chhhccCCCCCCeeECCCCccCCc-cChhhhhcc
Confidence 788888888874 333211 133456778888888887542 22 223334578888998887542221 111233457
Q ss_pred CCCcEEEecCCCCCC--hHHHHHHHHHhcCCCcEEEccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhc
Q 015721 254 KNLETLIIGGCRDIS--DESIKHLAASCKSSLKNLRMDWCLNISDSSLSCILSQCRNLEALDIGCCEEVTDAAFQDLGEV 331 (402)
Q Consensus 254 ~~L~~L~l~~~~~~~--~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 331 (402)
++|+.|+++++.... +..+.. + ++|++|+++++ .+++..++..+..+++|+.|++++|. ++......+ ..
T Consensus 424 ~~L~~L~l~~n~l~~~~~~~~~~----l-~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~-~~ 495 (606)
T 3vq2_A 424 EKLLYLDISYTNTKIDFDGIFLG----L-TSLNTLKMAGN-SFKDNTLSNVFANTTNLTFLDLSKCQ-LEQISWGVF-DT 495 (606)
T ss_dssp TTCCEEECTTSCCEECCTTTTTT----C-TTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTT-TT
T ss_pred ccCCEEECcCCCCCccchhhhcC----C-CCCCEEECCCC-cCCCcchHHhhccCCCCCEEECCCCc-CCccChhhh-cc
Confidence 889999998764221 122222 2 78999999887 44432234446788999999999864 433222222 34
Q ss_pred cCCCcEEEEeCCCCCHHHHHHHHHhCCCCCEEeccCCCCCCHhHHHhhccCCC-CcceEecccccc
Q 015721 332 ELSLKVLKVNCPKVTVVGIGNVLEKCASLEYIDVRSCPHVTQASCEEAGLQFP-QCCKVNFAGCLF 396 (402)
Q Consensus 332 ~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~p-~l~~l~~~~~~~ 396 (402)
+++|++|+++.+.++.... ..+..+++|+.|++++|. ++ .++.....+| .++.++++|++-
T Consensus 496 l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~l~~N~-l~--~~p~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 496 LHRLQLLNMSHNNLLFLDS-SHYNQLYSLSTLDCSFNR-IE--TSKGILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp CTTCCEEECCSSCCSCEEG-GGTTTCTTCCEEECTTSC-CC--CEESCGGGSCTTCCEEECCSCCC
T ss_pred cccCCEEECCCCcCCCcCH-HHccCCCcCCEEECCCCc-Cc--ccCHhHhhhcccCcEEEccCCCc
Confidence 5599999997777765422 334578999999999976 44 2222233677 499999998875
No 43
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.52 E-value=5.3e-16 Score=149.79 Aligned_cols=89 Identities=12% Similarity=0.179 Sum_probs=39.3
Q ss_pred HhcCCCCcEEeccCCCCCChHHHHHHHhccCCCcEEEEeCCCCCHHHHHHHHHhCCCCCEEeccCCCCCCHhHHHhhccC
Q 015721 303 LSQCRNLEALDIGCCEEVTDAAFQDLGEVELSLKVLKVNCPKVTVVGIGNVLEKCASLEYIDVRSCPHVTQASCEEAGLQ 382 (402)
Q Consensus 303 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~ 382 (402)
+..+++|+.|+++++. ++... ......+++|+.|+++.|.++.... ..+..+++|+.|++++|. ++......+...
T Consensus 532 ~~~l~~L~~L~L~~N~-l~~i~-~~~~~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~ 607 (680)
T 1ziw_A 532 LKGLSHLHILNLESNG-FDEIP-VEVFKDLFELKIIDLGLNNLNTLPA-SVFNNQVSLKSLNLQKNL-ITSVEKKVFGPA 607 (680)
T ss_dssp TTTCTTCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECTTSC-CCBCCHHHHHHH
T ss_pred hcCCCCCCEEECCCCC-CCCCC-HHHcccccCcceeECCCCCCCcCCH-hHhCCCCCCCEEECCCCc-CCccChhHhccc
Confidence 3455566666665532 22110 1111223356666665555543221 112345666666666542 322222222223
Q ss_pred CCCcceEeccccc
Q 015721 383 FPQCCKVNFAGCL 395 (402)
Q Consensus 383 ~p~l~~l~~~~~~ 395 (402)
+++++.++++|+|
T Consensus 608 ~~~L~~l~l~~N~ 620 (680)
T 1ziw_A 608 FRNLTELDMRFNP 620 (680)
T ss_dssp HTTCSEEECTTCC
T ss_pred ccccCEEEccCCC
Confidence 5566666666554
No 44
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.52 E-value=7.7e-16 Score=145.07 Aligned_cols=104 Identities=25% Similarity=0.216 Sum_probs=53.2
Q ss_pred CcceEEeccCCcCCCCCCCCChhhHHHHHhhCCCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCCCCcChHHHHHH
Q 015721 66 SRLVELDLSQSVSRSFYPGVTDSDLAVIADGFKSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLTDKGLSAV 145 (402)
Q Consensus 66 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 145 (402)
+++++|+++++.. ..+....+ ..+++|++|+++++. ++......+ ..+++|++|+++++. +.. ++..
T Consensus 52 ~~L~~L~Ls~N~i----~~~~~~~~----~~l~~L~~L~Ls~N~-l~~~~~~~~-~~l~~L~~L~Ls~N~-l~~--lp~~ 118 (562)
T 3a79_B 52 PRTKALSLSQNSI----SELRMPDI----SFLSELRVLRLSHNR-IRSLDFHVF-LFNQDLEYLDVSHNR-LQN--ISCC 118 (562)
T ss_dssp TTCCEEECCSSCC----CCCCGGGT----TTCTTCCEEECCSCC-CCEECTTTT-TTCTTCCEEECTTSC-CCE--ECSC
T ss_pred CCcCEEECCCCCc----cccChhhh----ccCCCccEEECCCCC-CCcCCHHHh-CCCCCCCEEECCCCc-CCc--cCcc
Confidence 5677777776653 22222222 346777777777653 443222222 356677777776654 332 1111
Q ss_pred HhcCccCcEEecCCCccCChHHHHHHHHhCCCCcEEecCC
Q 015721 146 AEGCQDLRSLHLAGCKSVTDGTLQALSKNCRNLEELGLLG 185 (402)
Q Consensus 146 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 185 (402)
.+++|++|+++++. +.....+..+..+++|++|++++
T Consensus 119 --~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~ 155 (562)
T 3a79_B 119 --PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSA 155 (562)
T ss_dssp --CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEEC
T ss_pred --ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCC
Confidence 46667777766653 22211112233466666666665
No 45
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.51 E-value=1.8e-16 Score=138.11 Aligned_cols=241 Identities=15% Similarity=0.087 Sum_probs=111.0
Q ss_pred hhCCCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCCCCcChHHHHHHHhcCccCcEEecCCCccCChHHHHHHHHh
Q 015721 95 DGFKSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLTDKGLSAVAEGCQDLRSLHLAGCKSVTDGTLQALSKN 174 (402)
Q Consensus 95 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 174 (402)
..+++|++|+++++. +.......+ ..+++|++|+++++. +.... + +..+++|++|+++++. +.... .
T Consensus 31 ~~~~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~Ls~n~-l~~~~-~--~~~l~~L~~L~Ls~n~-l~~l~------~ 97 (317)
T 3o53_A 31 QSAWNVKELDLSGNP-LSQISAADL-APFTKLELLNLSSNV-LYETL-D--LESLSTLRTLDLNNNY-VQELL------V 97 (317)
T ss_dssp TTGGGCSEEECTTSC-CCCCCHHHH-TTCTTCCEEECTTSC-CEEEE-E--ETTCTTCCEEECCSSE-EEEEE------E
T ss_pred ccCCCCCEEECcCCc-cCcCCHHHh-hCCCcCCEEECCCCc-CCcch-h--hhhcCCCCEEECcCCc-ccccc------C
Confidence 334455555555432 332222222 345555555555543 22110 0 2345555555555542 11100 1
Q ss_pred CCCCcEEecCCCCCCchHHHHHHHhcCCCCCEEccCCCCCCCcccHHHHHhcCCCCCEEEecCCCCCChHHHHHHHHhCC
Q 015721 175 CRNLEELGLLGCTSISDSGVIDLVNGCQNIKFLDLNKCSNIGDNGISSVSKSCSSLKTLKLLDCYKVGDKSILSLAKFCK 254 (402)
Q Consensus 175 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 254 (402)
.++|++|+++++ .++... ...+++|++|+++++..... .+.....+++|++|+++++. +.......+...++
T Consensus 98 ~~~L~~L~l~~n-~l~~~~----~~~~~~L~~L~l~~N~l~~~--~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~ 169 (317)
T 3o53_A 98 GPSIETLHAANN-NISRVS----CSRGQGKKNIYLANNKITML--RDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSD 169 (317)
T ss_dssp CTTCCEEECCSS-CCSEEE----ECCCSSCEEEECCSSCCCSG--GGBCTGGGSSEEEEECTTSC-CCEEEGGGGGGGTT
T ss_pred CCCcCEEECCCC-ccCCcC----ccccCCCCEEECCCCCCCCc--cchhhhccCCCCEEECCCCC-CCcccHHHHhhccC
Confidence 355555555542 222110 12245556666555322111 01112234556666665532 22211122223356
Q ss_pred CCcEEEecCCCCCChH-HHHHHHHHhcCCCcEEEccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhccC
Q 015721 255 NLETLIIGGCRDISDE-SIKHLAASCKSSLKNLRMDWCLNISDSSLSCILSQCRNLEALDIGCCEEVTDAAFQDLGEVEL 333 (402)
Q Consensus 255 ~L~~L~l~~~~~~~~~-~~~~l~~~~~~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 333 (402)
+|+.|+++++. ++.. ... ..++|++|+++++ .++. +...+..+++|+.|+++++. ++. ++......+
T Consensus 170 ~L~~L~L~~N~-l~~~~~~~-----~l~~L~~L~Ls~N-~l~~--l~~~~~~l~~L~~L~L~~N~-l~~--l~~~~~~l~ 237 (317)
T 3o53_A 170 TLEHLNLQYNF-IYDVKGQV-----VFAKLKTLDLSSN-KLAF--MGPEFQSAAGVTWISLRNNK-LVL--IEKALRFSQ 237 (317)
T ss_dssp TCCEEECTTSC-CCEEECCC-----CCTTCCEEECCSS-CCCE--ECGGGGGGTTCSEEECTTSC-CCE--ECTTCCCCT
T ss_pred cCCEEECCCCc-Cccccccc-----ccccCCEEECCCC-cCCc--chhhhcccCcccEEECcCCc-ccc--hhhHhhcCC
Confidence 66666665543 2211 000 1266777777765 3331 21225566777777777643 332 121223345
Q ss_pred CCcEEEEeCCCCCHHHHHHHHHhCCCCCEEeccCC
Q 015721 334 SLKVLKVNCPKVTVVGIGNVLEKCASLEYIDVRSC 368 (402)
Q Consensus 334 ~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c 368 (402)
+|+.|+++.|.++...+..++..++.|+.|++.++
T Consensus 238 ~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 238 NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp TCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 77777776677765556666667777777777644
No 46
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.50 E-value=8.4e-17 Score=158.53 Aligned_cols=160 Identities=19% Similarity=0.139 Sum_probs=88.1
Q ss_pred cCcceEEeccCCcCCCCCCCCChhhHHHHHhhCCCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCCCCcChHHHHH
Q 015721 65 FSRLVELDLSQSVSRSFYPGVTDSDLAVIADGFKSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLTDKGLSA 144 (402)
Q Consensus 65 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 144 (402)
.+++++|+++++... .+....+ ..+++|+.|+++++..........+ ..+++|++|+++++. +... .+.
T Consensus 23 p~~l~~LdLs~N~i~----~i~~~~~----~~l~~L~~LdLs~n~~~~~i~~~~f-~~L~~L~~L~Ls~N~-l~~~-~p~ 91 (844)
T 3j0a_A 23 LNTTERLLLSFNYIR----TVTASSF----PFLEQLQLLELGSQYTPLTIDKEAF-RNLPNLRILDLGSSK-IYFL-HPD 91 (844)
T ss_dssp CTTCCEEEEESCCCC----EECSSSC----SSCCSCSEEEECTTCCCCEECTTTT-SSCTTCCEEECTTCC-CCEE-CTT
T ss_pred CCCcCEEECCCCcCC----ccChhHC----cccccCeEEeCCCCCCccccCHHHh-cCCCCCCEEECCCCc-Cccc-CHh
Confidence 357888888876532 2211111 3577888888887643322212222 567888888888765 4321 133
Q ss_pred HHhcCccCcEEecCCCccCChHHHHHHHHhCCCCcEEecCCCCCCchHHHHHHHhcCCCCCEEccCCCCCCC--cccHHH
Q 015721 145 VAEGCQDLRSLHLAGCKSVTDGTLQALSKNCRNLEELGLLGCTSISDSGVIDLVNGCQNIKFLDLNKCSNIG--DNGISS 222 (402)
Q Consensus 145 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~ 222 (402)
.+..+++|++|+++++..............+++|++|+++++ .+........+.++++|++|+++++.... ...+..
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~ 170 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP 170 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH
T ss_pred HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc
Confidence 345678888888887643211111112345788888888774 33322222346677888888887753221 122333
Q ss_pred HHhcCCCCCEEEecCC
Q 015721 223 VSKSCSSLKTLKLLDC 238 (402)
Q Consensus 223 ~~~~~~~L~~L~l~~~ 238 (402)
+.. ++|+.|+++++
T Consensus 171 l~~--~~L~~L~L~~n 184 (844)
T 3j0a_A 171 LQG--KTLSFFSLAAN 184 (844)
T ss_dssp HHH--CSSCCCEECCS
T ss_pred ccC--CccceEECCCC
Confidence 221 45666666554
No 47
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.47 E-value=2.4e-14 Score=130.66 Aligned_cols=249 Identities=17% Similarity=0.120 Sum_probs=170.8
Q ss_pred hCCCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCCCCcChHHHHHHHhcCccCcEEecCCCccCChHHHHHHHHhC
Q 015721 96 GFKSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLTDKGLSAVAEGCQDLRSLHLAGCKSVTDGTLQALSKNC 175 (402)
Q Consensus 96 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 175 (402)
.+++|++|+++++. +... +.+ ..+++|++|+++++. +.... ...+++|++|+++++. +.... ...+
T Consensus 40 ~l~~L~~L~Ls~n~-l~~~--~~l-~~l~~L~~L~Ls~n~-l~~~~----~~~l~~L~~L~Ls~N~-l~~~~----~~~l 105 (457)
T 3bz5_A 40 QLATLTSLDCHNSS-ITDM--TGI-EKLTGLTKLICTSNN-ITTLD----LSQNTNLTYLACDSNK-LTNLD----VTPL 105 (457)
T ss_dssp HHTTCCEEECCSSC-CCCC--TTG-GGCTTCSEEECCSSC-CSCCC----CTTCTTCSEEECCSSC-CSCCC----CTTC
T ss_pred HcCCCCEEEccCCC-cccC--hhh-cccCCCCEEEccCCc-CCeEc----cccCCCCCEEECcCCC-Cceee----cCCC
Confidence 47899999999864 5543 233 578999999999976 55422 4678999999999975 33321 4468
Q ss_pred CCCcEEecCCCCCCchHHHHHHHhcCCCCCEEccCCCCCCCcccHHHHHhcCCCCCEEEecCCCCCChHHHHHHHHhCCC
Q 015721 176 RNLEELGLLGCTSISDSGVIDLVNGCQNIKFLDLNKCSNIGDNGISSVSKSCSSLKTLKLLDCYKVGDKSILSLAKFCKN 255 (402)
Q Consensus 176 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 255 (402)
++|++|+++++ .++.. . +..+++|++|+++++.. .... ...+++|++|+++++..+.... ...+++
T Consensus 106 ~~L~~L~L~~N-~l~~l--~--~~~l~~L~~L~l~~N~l-~~l~----l~~l~~L~~L~l~~n~~~~~~~----~~~l~~ 171 (457)
T 3bz5_A 106 TKLTYLNCDTN-KLTKL--D--VSQNPLLTYLNCARNTL-TEID----VSHNTQLTELDCHLNKKITKLD----VTPQTQ 171 (457)
T ss_dssp TTCCEEECCSS-CCSCC--C--CTTCTTCCEEECTTSCC-SCCC----CTTCTTCCEEECTTCSCCCCCC----CTTCTT
T ss_pred CcCCEEECCCC-cCCee--c--CCCCCcCCEEECCCCcc-ceec----cccCCcCCEEECCCCCcccccc----cccCCc
Confidence 99999999985 45442 2 67889999999998643 3322 3468899999999875554322 234789
Q ss_pred CcEEEecCCCCCChHHHHHHHHHhcCCCcEEEccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhccCCC
Q 015721 256 LETLIIGGCRDISDESIKHLAASCKSSLKNLRMDWCLNISDSSLSCILSQCRNLEALDIGCCEEVTDAAFQDLGEVELSL 335 (402)
Q Consensus 256 L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 335 (402)
|+.|+++++. ++...+ .. .++|+.|+++++ .++.. . +..+++|+.|+++++. ++. ++ ...+++|
T Consensus 172 L~~L~ls~n~-l~~l~l----~~-l~~L~~L~l~~N-~l~~~---~-l~~l~~L~~L~Ls~N~-l~~--ip--~~~l~~L 235 (457)
T 3bz5_A 172 LTTLDCSFNK-ITELDV----SQ-NKLLNRLNCDTN-NITKL---D-LNQNIQLTFLDCSSNK-LTE--ID--VTPLTQL 235 (457)
T ss_dssp CCEEECCSSC-CCCCCC----TT-CTTCCEEECCSS-CCSCC---C-CTTCTTCSEEECCSSC-CSC--CC--CTTCTTC
T ss_pred CCEEECCCCc-cceecc----cc-CCCCCEEECcCC-cCCee---c-cccCCCCCEEECcCCc-ccc--cC--ccccCCC
Confidence 9999998863 443222 22 389999999987 45432 1 6789999999999854 443 22 3445699
Q ss_pred cEEEEeCCCCCHHHHHHHHHhCCCCC----------EEeccCCCCCCHhHHHhhccCCCCcceEecccccc
Q 015721 336 KVLKVNCPKVTVVGIGNVLEKCASLE----------YIDVRSCPHVTQASCEEAGLQFPQCCKVNFAGCLF 396 (402)
Q Consensus 336 ~~L~l~~~~~~~~~l~~~~~~~~~L~----------~L~l~~c~~~~~~~~~~~~~~~p~l~~l~~~~~~~ 396 (402)
+.|+++.+.++.... ..+++|+ .|++++|+...... ...+++++.+++++|..
T Consensus 236 ~~L~l~~N~l~~~~~----~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~----~~~l~~L~~L~Ls~n~~ 298 (457)
T 3bz5_A 236 TYFDCSVNPLTELDV----STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ----AEGCRKIKELDVTHNTQ 298 (457)
T ss_dssp SEEECCSSCCSCCCC----TTCTTCCEEECTTCCCSCCCCTTCTTCCEEE----CTTCTTCCCCCCTTCTT
T ss_pred CEEEeeCCcCCCcCH----HHCCCCCEEeccCCCCCEEECCCCccCCccc----ccccccCCEEECCCCcc
Confidence 999997778776432 3455555 55555554332211 12467778888877764
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.46 E-value=1.3e-15 Score=133.66 Aligned_cols=290 Identities=16% Similarity=0.116 Sum_probs=167.6
Q ss_pred cceEEeccCCcCCCCCCCCChhhHHHHHhhCCCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCCCCcChHHHHHHH
Q 015721 67 RLVELDLSQSVSRSFYPGVTDSDLAVIADGFKSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLTDKGLSAVA 146 (402)
Q Consensus 67 ~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 146 (402)
+++.++++++........ ..++|+.|+++++. +.......+ ..+++|++|+++++. +... .+..+
T Consensus 34 ~l~~l~~~~~~l~~ip~~-----------~~~~l~~L~l~~n~-i~~~~~~~~-~~l~~L~~L~L~~n~-l~~~-~~~~~ 98 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKE-----------ISPDTTLLDLQNND-ISELRKDDF-KGLQHLYALVLVNNK-ISKI-HEKAF 98 (332)
T ss_dssp ETTEEECCSSCCSSCCSC-----------CCTTCCEEECCSSC-CCEECTTTT-TTCTTCCEEECCSSC-CCEE-CGGGS
T ss_pred cCCEEECCCCCccccCCC-----------CCCCCeEEECCCCc-CCccCHhHh-hCCCCCcEEECCCCc-cCcc-CHhHh
Confidence 577888876653222211 13688999998854 443322223 567899999998865 4432 12334
Q ss_pred hcCccCcEEecCCCccCChHHHHHHHHhCCCCcEEecCCCCCCchHHHHHHHhcCCCCCEEccCCCCCCCcccHHHHHhc
Q 015721 147 EGCQDLRSLHLAGCKSVTDGTLQALSKNCRNLEELGLLGCTSISDSGVIDLVNGCQNIKFLDLNKCSNIGDNGISSVSKS 226 (402)
Q Consensus 147 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 226 (402)
..+++|++|+++++.. .. ++. ...++|++|+++++ .+... ....+..+++|+.|+++++........+.....
T Consensus 99 ~~l~~L~~L~L~~n~l-~~--l~~--~~~~~L~~L~l~~n-~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 171 (332)
T 2ft3_A 99 SPLRKLQKLYISKNHL-VE--IPP--NLPSSLVELRIHDN-RIRKV-PKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG 171 (332)
T ss_dssp TTCTTCCEEECCSSCC-CS--CCS--SCCTTCCEEECCSS-CCCCC-CSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCS
T ss_pred hCcCCCCEEECCCCcC-Cc--cCc--cccccCCEEECCCC-ccCcc-CHhHhCCCccCCEEECCCCccccCCCCcccccC
Confidence 5688999999988632 21 111 11378999999874 33321 122356788999999987543211111122223
Q ss_pred CCCCCEEEecCCCCCChHHHHHHHHhCCCCcEEEecCCCCCCh---HHHHHHHHHhcCCCcEEEccCCCCCChHHHHHHH
Q 015721 227 CSSLKTLKLLDCYKVGDKSILSLAKFCKNLETLIIGGCRDISD---ESIKHLAASCKSSLKNLRMDWCLNISDSSLSCIL 303 (402)
Q Consensus 227 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~l~~~~~~~L~~L~l~~~~~~~~~~l~~~l 303 (402)
+ +|+.|+++++. +.. ++. ...++|+.|+++++. +.. ..+..+ ++|++|+++++ .++.. ....+
T Consensus 172 l-~L~~L~l~~n~-l~~--l~~--~~~~~L~~L~l~~n~-i~~~~~~~l~~l-----~~L~~L~L~~N-~l~~~-~~~~~ 237 (332)
T 2ft3_A 172 L-KLNYLRISEAK-LTG--IPK--DLPETLNELHLDHNK-IQAIELEDLLRY-----SKLYRLGLGHN-QIRMI-ENGSL 237 (332)
T ss_dssp C-CCSCCBCCSSB-CSS--CCS--SSCSSCSCCBCCSSC-CCCCCTTSSTTC-----TTCSCCBCCSS-CCCCC-CTTGG
T ss_pred C-ccCEEECcCCC-CCc--cCc--cccCCCCEEECCCCc-CCccCHHHhcCC-----CCCCEEECCCC-cCCcC-ChhHh
Confidence 3 78888888753 221 111 012688888887753 222 122222 78899999877 33321 11236
Q ss_pred hcCCCCcEEeccCCCCCChHHHHHHHhccCCCcEEEEeCCCCCHHHHHHHHH-----hCCCCCEEeccCCCCCCHhHHHh
Q 015721 304 SQCRNLEALDIGCCEEVTDAAFQDLGEVELSLKVLKVNCPKVTVVGIGNVLE-----KCASLEYIDVRSCPHVTQASCEE 378 (402)
Q Consensus 304 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~-----~~~~L~~L~l~~c~~~~~~~~~~ 378 (402)
..+++|+.|+++++. ++. ++.....+++|+.|+++.|.++..+...+.. ..++|+.|++.++|.......+.
T Consensus 238 ~~l~~L~~L~L~~N~-l~~--lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~ 314 (332)
T 2ft3_A 238 SFLPTLRELHLDNNK-LSR--VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPA 314 (332)
T ss_dssp GGCTTCCEEECCSSC-CCB--CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGG
T ss_pred hCCCCCCEEECCCCc-Cee--cChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcc
Confidence 788899999998754 431 2222344558999999777777644332221 14678999999887542233333
Q ss_pred hccCCCCcceEeccccc
Q 015721 379 AGLQFPQCCKVNFAGCL 395 (402)
Q Consensus 379 ~~~~~p~l~~l~~~~~~ 395 (402)
....+++++.++++++.
T Consensus 315 ~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 315 TFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GGTTBCCSTTEEC----
T ss_pred cccccchhhhhhccccc
Confidence 34467888888888764
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.46 E-value=8.2e-15 Score=128.47 Aligned_cols=271 Identities=16% Similarity=0.141 Sum_probs=170.4
Q ss_pred CcceEEeccCCcCCCCCCCCChhhHHHHHhhCCCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCCCCcChHHHHHH
Q 015721 66 SRLVELDLSQSVSRSFYPGVTDSDLAVIADGFKSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLTDKGLSAV 145 (402)
Q Consensus 66 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 145 (402)
++++.|+++++... .+....+ ..+++|++|+++++. +.......+ ..+++|++|+++++. +.. ++.
T Consensus 52 ~~l~~L~L~~n~i~----~~~~~~~----~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~Ls~n~-l~~--l~~- 117 (330)
T 1xku_A 52 PDTALLDLQNNKIT----EIKDGDF----KNLKNLHTLILINNK-ISKISPGAF-APLVKLERLYLSKNQ-LKE--LPE- 117 (330)
T ss_dssp TTCCEEECCSSCCC----CBCTTTT----TTCTTCCEEECCSSC-CCCBCTTTT-TTCTTCCEEECCSSC-CSB--CCS-
T ss_pred CCCeEEECCCCcCC----EeChhhh----ccCCCCCEEECCCCc-CCeeCHHHh-cCCCCCCEEECCCCc-CCc--cCh-
Confidence 57899999987643 2222222 468999999999864 443322233 568999999999875 442 111
Q ss_pred HhcCccCcEEecCCCccCChHHHHHHHHhCCCCcEEecCCCCCCch-HHHHHHHhcCCCCCEEccCCCCCCCcccHHHHH
Q 015721 146 AEGCQDLRSLHLAGCKSVTDGTLQALSKNCRNLEELGLLGCTSISD-SGVIDLVNGCQNIKFLDLNKCSNIGDNGISSVS 224 (402)
Q Consensus 146 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 224 (402)
...++|++|+++++. +... .......+++|+.|+++++. +.. ......+..+++|++|+++++..... +.
T Consensus 118 -~~~~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l---~~-- 188 (330)
T 1xku_A 118 -KMPKTLQELRVHENE-ITKV-RKSVFNGLNQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIRIADTNITTI---PQ-- 188 (330)
T ss_dssp -SCCTTCCEEECCSSC-CCBB-CHHHHTTCTTCCEEECCSSC-CCGGGBCTTGGGGCTTCCEEECCSSCCCSC---CS--
T ss_pred -hhcccccEEECCCCc-cccc-CHhHhcCCccccEEECCCCc-CCccCcChhhccCCCCcCEEECCCCccccC---Cc--
Confidence 124789999999874 3322 23445669999999999853 332 11234567889999999998543221 11
Q ss_pred hcCCCCCEEEecCCCCCChHHHHHHHHhCCCCcEEEecCCCCCChHHHHHHHHHhcCCCcEEEccCCCCCChHHHHHHHh
Q 015721 225 KSCSSLKTLKLLDCYKVGDKSILSLAKFCKNLETLIIGGCRDISDESIKHLAASCKSSLKNLRMDWCLNISDSSLSCILS 304 (402)
Q Consensus 225 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~l~~~l~ 304 (402)
...++|++|+++++. +.... ...+..+++|+.|+++++. +.......+ .. .++|++|+++++ .++ .++..+.
T Consensus 189 ~~~~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~-~~-l~~L~~L~L~~N-~l~--~lp~~l~ 260 (330)
T 1xku_A 189 GLPPSLTELHLDGNK-ITKVD-AASLKGLNNLAKLGLSFNS-ISAVDNGSL-AN-TPHLRELHLNNN-KLV--KVPGGLA 260 (330)
T ss_dssp SCCTTCSEEECTTSC-CCEEC-TGGGTTCTTCCEEECCSSC-CCEECTTTG-GG-STTCCEEECCSS-CCS--SCCTTTT
T ss_pred cccccCCEEECCCCc-CCccC-HHHhcCCCCCCEEECCCCc-CceeChhhc-cC-CCCCCEEECCCC-cCc--cCChhhc
Confidence 123789999999864 33221 2233458999999998864 332111111 22 289999999988 444 3434467
Q ss_pred cCCCCcEEeccCCCCCChHHHHHHHh-----ccCCCcEEEEeCCCCCHHHHH-HHHHhCCCCCEEeccCC
Q 015721 305 QCRNLEALDIGCCEEVTDAAFQDLGE-----VELSLKVLKVNCPKVTVVGIG-NVLEKCASLEYIDVRSC 368 (402)
Q Consensus 305 ~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~l~-~~~~~~~~L~~L~l~~c 368 (402)
.+++|+.|+++++. ++......+.. ..++|+.|++..|.+....+. .....++.|+.++++++
T Consensus 261 ~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 261 DHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp TCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred cCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 89999999999854 43322222211 134789999977777643321 23446788999988775
No 50
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.45 E-value=4.6e-14 Score=136.26 Aligned_cols=136 Identities=9% Similarity=0.073 Sum_probs=72.2
Q ss_pred CCCCcEEEecCCCCCChHHHHHHHHHhcCCCcEEEccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhcc
Q 015721 253 CKNLETLIIGGCRDISDESIKHLAASCKSSLKNLRMDWCLNISDSSLSCILSQCRNLEALDIGCCEEVTDAAFQDLGEVE 332 (402)
Q Consensus 253 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 332 (402)
.++|+.|+++++. +.......+.....++|++|+++++ .++.. ....+..+++|++|+++++. ++......+ ..+
T Consensus 221 ~~~L~~L~L~~n~-l~~~~~~~~~~l~~~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l 295 (680)
T 1ziw_A 221 NTSIRNLSLSNSQ-LSTTSNTTFLGLKWTNLTMLDLSYN-NLNVV-GNDSFAWLPQLEYFFLEYNN-IQHLFSHSL-HGL 295 (680)
T ss_dssp TSCCCEEECTTSC-CCEECTTTTGGGGGSCCCEEECTTS-CCCEE-CTTTTTTCTTCCEEECCSCC-BSEECTTTT-TTC
T ss_pred hccccEEEccCCc-ccccChhHhhccCcCCCCEEECCCC-CcCcc-CcccccCcccccEeeCCCCc-cCccChhhh-cCC
Confidence 3567777776643 2211111111100145888888776 33311 12235678888888888754 332221222 334
Q ss_pred CCCcEEEEeCCCCC-HH---HHH----HHHHhCCCCCEEeccCCCCCCHhHHHhhccCCCCcceEeccccc
Q 015721 333 LSLKVLKVNCPKVT-VV---GIG----NVLEKCASLEYIDVRSCPHVTQASCEEAGLQFPQCCKVNFAGCL 395 (402)
Q Consensus 333 ~~L~~L~l~~~~~~-~~---~l~----~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~p~l~~l~~~~~~ 395 (402)
++|+.|++..+... .. .+. ..+..+++|+.|++++|. +.... ......+++++.+++++|.
T Consensus 296 ~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~Ls~n~ 364 (680)
T 1ziw_A 296 FNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND-IPGIK-SNMFTGLINLKYLSLSNSF 364 (680)
T ss_dssp TTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC-BCCCC-TTTTTTCTTCCEEECTTCB
T ss_pred CCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc-cCCCC-hhHhccccCCcEEECCCCc
Confidence 58888888322211 00 111 023468899999998864 33222 1222368899999998875
No 51
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.44 E-value=1.2e-13 Score=130.08 Aligned_cols=148 Identities=19% Similarity=0.102 Sum_probs=93.3
Q ss_pred cCcceEEeccCCcCCCCCCCCChhhHHHHHhhCCCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCCCCcChHHHHH
Q 015721 65 FSRLVELDLSQSVSRSFYPGVTDSDLAVIADGFKSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLTDKGLSA 144 (402)
Q Consensus 65 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 144 (402)
+...++++++++........ ..++|++|+++++. +.......+ ..+++|++|+++++. +... .+.
T Consensus 30 ~~~~~~l~ls~~~L~~ip~~-----------~~~~L~~L~Ls~N~-i~~~~~~~~-~~l~~L~~L~Ls~N~-l~~~-~~~ 94 (562)
T 3a79_B 30 NELESMVDYSNRNLTHVPKD-----------LPPRTKALSLSQNS-ISELRMPDI-SFLSELRVLRLSHNR-IRSL-DFH 94 (562)
T ss_dssp ---CCEEECTTSCCCSCCTT-----------SCTTCCEEECCSSC-CCCCCGGGT-TTCTTCCEEECCSCC-CCEE-CTT
T ss_pred cCCCcEEEcCCCCCccCCCC-----------CCCCcCEEECCCCC-ccccChhhh-ccCCCccEEECCCCC-CCcC-CHH
Confidence 44458899998764322211 13799999999865 443322233 578999999999875 5432 123
Q ss_pred HHhcCccCcEEecCCCccCChHHHHHHHHhCCCCcEEecCCCCCCchHHHHHHHhcCCCCCEEccCCCCCCCcccHHHHH
Q 015721 145 VAEGCQDLRSLHLAGCKSVTDGTLQALSKNCRNLEELGLLGCTSISDSGVIDLVNGCQNIKFLDLNKCSNIGDNGISSVS 224 (402)
Q Consensus 145 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 224 (402)
.+..+++|++|+++++. +.. ++.. .+++|++|+++++ .+.....+..+.++++|++|+++++. +....+.
T Consensus 95 ~~~~l~~L~~L~Ls~N~-l~~--lp~~--~l~~L~~L~Ls~N-~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~~~~~--- 164 (562)
T 3a79_B 95 VFLFNQDLEYLDVSHNR-LQN--ISCC--PMASLRHLDLSFN-DFDVLPVCKEFGNLTKLTFLGLSAAK-FRQLDLL--- 164 (562)
T ss_dssp TTTTCTTCCEEECTTSC-CCE--ECSC--CCTTCSEEECCSS-CCSBCCCCGGGGGCTTCCEEEEECSB-CCTTTTG---
T ss_pred HhCCCCCCCEEECCCCc-CCc--cCcc--ccccCCEEECCCC-CccccCchHhhcccCcccEEecCCCc-cccCchh---
Confidence 34678999999999974 332 2222 5899999999985 44432223457788999999998843 3322222
Q ss_pred hcCCCC--CEEEecCC
Q 015721 225 KSCSSL--KTLKLLDC 238 (402)
Q Consensus 225 ~~~~~L--~~L~l~~~ 238 (402)
.+++| ++|+++++
T Consensus 165 -~l~~L~L~~L~L~~n 179 (562)
T 3a79_B 165 -PVAHLHLSCILLDLV 179 (562)
T ss_dssp -GGTTSCEEEEEEEES
T ss_pred -hhhhceeeEEEeecc
Confidence 23344 66666553
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.44 E-value=6.1e-14 Score=124.13 Aligned_cols=257 Identities=16% Similarity=0.127 Sum_probs=132.4
Q ss_pred CCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCCCCcChHHHHHHHhcCccCcEEecCCCccCChHHHHHHHHhCCC
Q 015721 98 KSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLTDKGLSAVAEGCQDLRSLHLAGCKSVTDGTLQALSKNCRN 177 (402)
Q Consensus 98 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 177 (402)
++|++|+++++. ++......+ ..+++|++|+++++. +... .+..+..+++|++|+++++. +.. ........+++
T Consensus 52 ~~L~~L~l~~n~-i~~~~~~~~-~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~Ls~n~-l~~-~~~~~~~~l~~ 125 (353)
T 2z80_A 52 EAVKSLDLSNNR-ITYISNSDL-QRCVNLQALVLTSNG-INTI-EEDSFSSLGSLEHLDLSYNY-LSN-LSSSWFKPLSS 125 (353)
T ss_dssp TTCCEEECTTSC-CCEECTTTT-TTCTTCCEEECTTSC-CCEE-CTTTTTTCTTCCEEECCSSC-CSS-CCHHHHTTCTT
T ss_pred ccCcEEECCCCc-CcccCHHHh-ccCCCCCEEECCCCc-cCcc-CHhhcCCCCCCCEEECCCCc-CCc-CCHhHhCCCcc
Confidence 467777777643 443222122 456777777776654 3321 11223456777777777653 222 12223445677
Q ss_pred CcEEecCCCCCCchHHHHH--HHhcCCCCCEEccCCCCCCCcccHHHHHhcCCCCCEEEecCCCCCChHHHHHHHHhCCC
Q 015721 178 LEELGLLGCTSISDSGVID--LVNGCQNIKFLDLNKCSNIGDNGISSVSKSCSSLKTLKLLDCYKVGDKSILSLAKFCKN 255 (402)
Q Consensus 178 L~~L~l~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 255 (402)
|++|+++++ .+.. ++. .+..+++|++|+++++..+.... +.....+++|++|+++++. +.... +.....+++
T Consensus 126 L~~L~L~~n-~l~~--l~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~-~~~l~~l~~ 199 (353)
T 2z80_A 126 LTFLNLLGN-PYKT--LGETSLFSHLTKLQILRVGNMDTFTKIQ-RKDFAGLTFLEELEIDASD-LQSYE-PKSLKSIQN 199 (353)
T ss_dssp CSEEECTTC-CCSS--SCSSCSCTTCTTCCEEEEEESSSCCEEC-TTTTTTCCEEEEEEEEETT-CCEEC-TTTTTTCSE
T ss_pred CCEEECCCC-CCcc--cCchhhhccCCCCcEEECCCCccccccC-HHHccCCCCCCEEECCCCC-cCccC-HHHHhcccc
Confidence 777777763 3332 111 34556777777777653333321 1222356677777776643 22111 122234667
Q ss_pred CcEEEecCCCCCChHHHHHHHHHhcCCCcEEEccCCCCCCh---HHHHHHHhcCCCCcEEeccCCCCCChHHHHHH---H
Q 015721 256 LETLIIGGCRDISDESIKHLAASCKSSLKNLRMDWCLNISD---SSLSCILSQCRNLEALDIGCCEEVTDAAFQDL---G 329 (402)
Q Consensus 256 L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~---~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~---~ 329 (402)
|+.|+++++. +.... ...... .++|++|+++++ .++. ..+. ....++.++.+++.++ .+++..+..+ .
T Consensus 200 L~~L~l~~n~-l~~~~-~~~~~~-~~~L~~L~L~~n-~l~~~~~~~l~-~~~~~~~l~~l~L~~~-~l~~~~l~~l~~~l 273 (353)
T 2z80_A 200 VSHLILHMKQ-HILLL-EIFVDV-TSSVECLELRDT-DLDTFHFSELS-TGETNSLIKKFTFRNV-KITDESLFQVMKLL 273 (353)
T ss_dssp EEEEEEECSC-STTHH-HHHHHH-TTTEEEEEEESC-BCTTCCCC-------CCCCCCEEEEESC-BCCHHHHHHHHHHH
T ss_pred CCeecCCCCc-cccch-hhhhhh-cccccEEECCCC-ccccccccccc-cccccchhhccccccc-cccCcchhhhHHHH
Confidence 7777776653 22211 111122 267777777765 2221 1111 1345666777777763 3555443332 2
Q ss_pred hccCCCcEEEEeCCCCCHHHHHHHHHhCCCCCEEeccCCCCCCH
Q 015721 330 EVELSLKVLKVNCPKVTVVGIGNVLEKCASLEYIDVRSCPHVTQ 373 (402)
Q Consensus 330 ~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~ 373 (402)
..+++|+.|+++.+.++.... ..+..+++|+.|++++|+...+
T Consensus 274 ~~l~~L~~L~Ls~N~l~~i~~-~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 274 NQISGLLELEFSRNQLKSVPD-GIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp HTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCBCCC
T ss_pred hcccCCCEEECCCCCCCccCH-HHHhcCCCCCEEEeeCCCccCc
Confidence 345578888886666663221 1235678888888888766544
No 53
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.43 E-value=3.5e-15 Score=130.34 Aligned_cols=83 Identities=18% Similarity=0.261 Sum_probs=49.7
Q ss_pred hcCcceEEeccCCcCCCCCCCCChhhHHHHHhhCCCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCCCCcChHHHH
Q 015721 64 RFSRLVELDLSQSVSRSFYPGVTDSDLAVIADGFKSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLTDKGLS 143 (402)
Q Consensus 64 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 143 (402)
..++++.|+++++........+ ..+++|++|+++++. +.. ++.....+++|++|+++++. +. .++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l---------~~l~~L~~L~L~~n~-l~~--lp~~~~~l~~L~~L~Ls~n~-l~--~lp 143 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQA---------FRLSHLQHMTIDAAG-LME--LPDTMQQFAGLETLTLARNP-LR--ALP 143 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCG---------GGGTTCSEEEEESSC-CCC--CCSCGGGGTTCSEEEEESCC-CC--CCC
T ss_pred cccceeEEEccCCCchhcChhh---------hhCCCCCEEECCCCC-ccc--hhHHHhccCCCCEEECCCCc-cc--cCc
Confidence 3467888888876543222111 236788888887754 331 22222457788888887765 43 233
Q ss_pred HHHhcCccCcEEecCCCc
Q 015721 144 AVAEGCQDLRSLHLAGCK 161 (402)
Q Consensus 144 ~~~~~~~~L~~L~l~~~~ 161 (402)
..+..+++|++|++++|.
T Consensus 144 ~~l~~l~~L~~L~L~~n~ 161 (328)
T 4fcg_A 144 ASIASLNRLRELSIRACP 161 (328)
T ss_dssp GGGGGCTTCCEEEEEEET
T ss_pred HHHhcCcCCCEEECCCCC
Confidence 345667788888887653
No 54
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.43 E-value=1.9e-13 Score=105.28 Aligned_cols=104 Identities=15% Similarity=0.282 Sum_probs=88.6
Q ss_pred CCCcEEEccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhc---cCCCcEEEE-eCCCCCHHHHHHHHHh
Q 015721 281 SSLKNLRMDWCLNISDSSLSCILSQCRNLEALDIGCCEEVTDAAFQDLGEV---ELSLKVLKV-NCPKVTVVGIGNVLEK 356 (402)
Q Consensus 281 ~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~---~~~L~~L~l-~~~~~~~~~l~~~~~~ 356 (402)
..|++|++++|. +++.++.. +..|++|++|++++|..++|.++..+... +++|++|++ +|.++++.++..+. .
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~-L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-~ 137 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDH-MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-H 137 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGG-GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-G
T ss_pred ceEeEEeCcCCC-ccHHHHHH-hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-c
Confidence 468999999984 88888776 47899999999999999999999999874 458999999 88999999998764 7
Q ss_pred CCCCCEEeccCCCCCCHhH--HHhhccCCCCcc
Q 015721 357 CASLEYIDVRSCPHVTQAS--CEEAGLQFPQCC 387 (402)
Q Consensus 357 ~~~L~~L~l~~c~~~~~~~--~~~~~~~~p~l~ 387 (402)
|++|++|++++|+.+++.+ ...+...+|+++
T Consensus 138 ~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 138 FRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170 (176)
T ss_dssp CTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred CCCCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence 9999999999999999865 567777889865
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.41 E-value=7.7e-14 Score=123.45 Aligned_cols=259 Identities=17% Similarity=0.137 Sum_probs=167.0
Q ss_pred CCCCCeEecCCCCCcChHHHHHHHhcCccCcEEecCCCccCChHHHHHHHHhCCCCcEEecCCCCCCchHHHHHHHhcCC
Q 015721 123 LCSLQSLDLSYCRKLTDKGLSAVAEGCQDLRSLHLAGCKSVTDGTLQALSKNCRNLEELGLLGCTSISDSGVIDLVNGCQ 202 (402)
Q Consensus 123 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 202 (402)
.++|++|+++++. +.... +..+..+++|++|+++++. +... .+..+..+++|++|+++++ .++.. ....+..++
T Consensus 51 ~~~L~~L~l~~n~-i~~~~-~~~~~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~ 124 (353)
T 2z80_A 51 TEAVKSLDLSNNR-ITYIS-NSDLQRCVNLQALVLTSNG-INTI-EEDSFSSLGSLEHLDLSYN-YLSNL-SSSWFKPLS 124 (353)
T ss_dssp CTTCCEEECTTSC-CCEEC-TTTTTTCTTCCEEECTTSC-CCEE-CTTTTTTCTTCCEEECCSS-CCSSC-CHHHHTTCT
T ss_pred cccCcEEECCCCc-CcccC-HHHhccCCCCCEEECCCCc-cCcc-CHhhcCCCCCCCEEECCCC-cCCcC-CHhHhCCCc
Confidence 3689999999875 54321 1234678999999999873 3321 1222445899999999984 44431 223467899
Q ss_pred CCCEEccCCCCCCCcccHHHHHhcCCCCCEEEecCCCCCChHHHHHHHHhCCCCcEEEecCCCCCChHHHHHHHHHhcCC
Q 015721 203 NIKFLDLNKCSNIGDNGISSVSKSCSSLKTLKLLDCYKVGDKSILSLAKFCKNLETLIIGGCRDISDESIKHLAASCKSS 282 (402)
Q Consensus 203 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~ 282 (402)
+|++|+++++.. ...........+++|++|+++++..+.... ...+..+++|+.|+++++. +.......+ .. .++
T Consensus 125 ~L~~L~L~~n~l-~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~l-~~-l~~ 199 (353)
T 2z80_A 125 SLTFLNLLGNPY-KTLGETSLFSHLTKLQILRVGNMDTFTKIQ-RKDFAGLTFLEELEIDASD-LQSYEPKSL-KS-IQN 199 (353)
T ss_dssp TCSEEECTTCCC-SSSCSSCSCTTCTTCCEEEEEESSSCCEEC-TTTTTTCCEEEEEEEEETT-CCEECTTTT-TT-CSE
T ss_pred cCCEEECCCCCC-cccCchhhhccCCCCcEEECCCCccccccC-HHHccCCCCCCEEECCCCC-cCccCHHHH-hc-ccc
Confidence 999999998543 221110134468999999999864443221 1223457899999998864 322111111 12 278
Q ss_pred CcEEEccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCChHHHHHH--HhccCCCcEEEEeCCCCCHHHHH---HHHHhC
Q 015721 283 LKNLRMDWCLNISDSSLSCILSQCRNLEALDIGCCEEVTDAAFQDL--GEVELSLKVLKVNCPKVTVVGIG---NVLEKC 357 (402)
Q Consensus 283 L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~l~---~~~~~~ 357 (402)
|++|+++++. ++. .....+..+++|+.|+++++. ++......+ ....+.++.+.+..+.++...+. ..+..+
T Consensus 200 L~~L~l~~n~-l~~-~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l 276 (353)
T 2z80_A 200 VSHLILHMKQ-HIL-LLEIFVDVTSSVECLELRDTD-LDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQI 276 (353)
T ss_dssp EEEEEEECSC-STT-HHHHHHHHTTTEEEEEEESCB-CTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTC
T ss_pred CCeecCCCCc-ccc-chhhhhhhcccccEEECCCCc-cccccccccccccccchhhccccccccccCcchhhhHHHHhcc
Confidence 9999999874 442 223345679999999999854 333221111 22344889999977888876543 446789
Q ss_pred CCCCEEeccCCCCCCHhHHHhhccCCCCcceEeccccccC
Q 015721 358 ASLEYIDVRSCPHVTQASCEEAGLQFPQCCKVNFAGCLFE 397 (402)
Q Consensus 358 ~~L~~L~l~~c~~~~~~~~~~~~~~~p~l~~l~~~~~~~~ 397 (402)
++|+.|++++|. ++ .....+...+++++.+++++|+..
T Consensus 277 ~~L~~L~Ls~N~-l~-~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 277 SGLLELEFSRNQ-LK-SVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp TTCCEEECCSSC-CC-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCCCEEECCCCC-CC-ccCHHHHhcCCCCCEEEeeCCCcc
Confidence 999999999974 44 222233247899999999998753
No 56
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.40 E-value=5e-14 Score=122.60 Aligned_cols=247 Identities=17% Similarity=0.178 Sum_probs=163.2
Q ss_pred hhHHHHHHHhcCcceEEeccCCcCCCCCCCCChhhHHHHHhhCCCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCC
Q 015721 55 PHMLRKIAARFSRLVELDLSQSVSRSFYPGVTDSDLAVIADGFKSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYC 134 (402)
Q Consensus 55 ~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 134 (402)
+.....+...+++|++|+++++.. ..+.... ...+++|+.|+++++. +.... . ...+++|++|+++++
T Consensus 23 ~~~~~~~~~~~~~L~~L~L~~n~l----~~~~~~~----~~~l~~L~~L~Ls~n~-l~~~~--~-~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 23 KQALASLRQSAWNVKELDLSGNPL----SQISAAD----LAPFTKLELLNLSSNV-LYETL--D-LESLSTLRTLDLNNN 90 (317)
T ss_dssp HHHHHHHHTTGGGCSEEECTTSCC----CCCCHHH----HTTCTTCCEEECTTSC-CEEEE--E-ETTCTTCCEEECCSS
T ss_pred hhhHHHHhccCCCCCEEECcCCcc----CcCCHHH----hhCCCcCCEEECCCCc-CCcch--h-hhhcCCCCEEECcCC
Confidence 455566667788999999998752 2332222 2578999999999865 44322 1 357899999999987
Q ss_pred CCcChHHHHHHHhcCccCcEEecCCCccCChHHHHHHHHhCCCCcEEecCCCCCCchHHHHHHHhcCCCCCEEccCCCCC
Q 015721 135 RKLTDKGLSAVAEGCQDLRSLHLAGCKSVTDGTLQALSKNCRNLEELGLLGCTSISDSGVIDLVNGCQNIKFLDLNKCSN 214 (402)
Q Consensus 135 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 214 (402)
. +.... ..++|++|+++++. +.... ...+++|++|+++++ .++.. ....+..+++|++|+++++ .
T Consensus 91 ~-l~~l~------~~~~L~~L~l~~n~-l~~~~----~~~~~~L~~L~l~~N-~l~~~-~~~~~~~l~~L~~L~Ls~N-~ 155 (317)
T 3o53_A 91 Y-VQELL------VGPSIETLHAANNN-ISRVS----CSRGQGKKNIYLANN-KITML-RDLDEGCRSRVQYLDLKLN-E 155 (317)
T ss_dssp E-EEEEE------ECTTCCEEECCSSC-CSEEE----ECCCSSCEEEECCSS-CCCSG-GGBCTGGGSSEEEEECTTS-C
T ss_pred c-ccccc------CCCCcCEEECCCCc-cCCcC----ccccCCCCEEECCCC-CCCCc-cchhhhccCCCCEEECCCC-C
Confidence 6 54321 35899999999874 33221 123789999999985 44431 1223456799999999985 4
Q ss_pred CCcccHHHHHhcCCCCCEEEecCCCCCChHHHHHHHHhCCCCcEEEecCCCCCChHHHHHHHHHhcCCCcEEEccCCCCC
Q 015721 215 IGDNGISSVSKSCSSLKTLKLLDCYKVGDKSILSLAKFCKNLETLIIGGCRDISDESIKHLAASCKSSLKNLRMDWCLNI 294 (402)
Q Consensus 215 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~ 294 (402)
+.......+...+++|++|+++++. +... ... ..+++|+.|+++++. ++.... .+ ... ++|++|+++++ .+
T Consensus 156 l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~--~~~-~~l~~L~~L~Ls~N~-l~~l~~-~~-~~l-~~L~~L~L~~N-~l 226 (317)
T 3o53_A 156 IDTVNFAELAASSDTLEHLNLQYNF-IYDV--KGQ-VVFAKLKTLDLSSNK-LAFMGP-EF-QSA-AGVTWISLRNN-KL 226 (317)
T ss_dssp CCEEEGGGGGGGTTTCCEEECTTSC-CCEE--ECC-CCCTTCCEEECCSSC-CCEECG-GG-GGG-TTCSEEECTTS-CC
T ss_pred CCcccHHHHhhccCcCCEEECCCCc-Cccc--ccc-cccccCCEEECCCCc-CCcchh-hh-ccc-CcccEEECcCC-cc
Confidence 4444444455568999999999864 3321 111 137899999998864 332111 11 223 89999999988 45
Q ss_pred ChHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhccCCCcEEEE
Q 015721 295 SDSSLSCILSQCRNLEALDIGCCEEVTDAAFQDLGEVELSLKVLKV 340 (402)
Q Consensus 295 ~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 340 (402)
+ .++..+..+++|+.|+++++. +.......+....++|+.+++
T Consensus 227 ~--~l~~~~~~l~~L~~L~l~~N~-~~~~~~~~~~~~~~~L~~l~l 269 (317)
T 3o53_A 227 V--LIEKALRFSQNLEHFDLRGNG-FHCGTLRDFFSKNQRVQTVAK 269 (317)
T ss_dssp C--EECTTCCCCTTCCEEECTTCC-CBHHHHHHHHHTCHHHHHHHH
T ss_pred c--chhhHhhcCCCCCEEEccCCC-ccCcCHHHHHhccccceEEEC
Confidence 5 234446788999999999855 543344555555556666655
No 57
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.40 E-value=9.3e-15 Score=144.02 Aligned_cols=43 Identities=9% Similarity=0.116 Sum_probs=21.6
Q ss_pred HHHHhCCCCCEEeccCCCCCCHhHHHhhccCCCCcceEeccccc
Q 015721 352 NVLEKCASLEYIDVRSCPHVTQASCEEAGLQFPQCCKVNFAGCL 395 (402)
Q Consensus 352 ~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~p~l~~l~~~~~~ 395 (402)
..+..+++|+.|++++|.- +...........++++.+++++|.
T Consensus 420 ~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~~~~~L~~L~Ls~N~ 462 (844)
T 3j0a_A 420 YFLLRVPHLQILILNQNRF-SSCSGDQTPSENPSLEQLFLGENM 462 (844)
T ss_dssp HHHTTCTTCCEEEEESCCC-CCCCSSSSSCSCTTCCBCEEESCC
T ss_pred hhhhcCCccceeeCCCCcc-cccccccccccCCccccccCCCCc
Confidence 3445678888888877543 211111111234555555555543
No 58
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.39 E-value=3.1e-15 Score=130.71 Aligned_cols=81 Identities=21% Similarity=0.251 Sum_probs=40.5
Q ss_pred CCCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCCCCcChHHHHHHHhcCccCcEEecCCCccCChHHHHHHHHhCC
Q 015721 97 FKSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLTDKGLSAVAEGCQDLRSLHLAGCKSVTDGTLQALSKNCR 176 (402)
Q Consensus 97 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 176 (402)
.++++.|+++++. +.. ++.....+++|++|+++++. +. .++..+..+++|++|+++++.. . .++.....++
T Consensus 80 ~~~l~~L~L~~n~-l~~--lp~~l~~l~~L~~L~L~~n~-l~--~lp~~~~~l~~L~~L~Ls~n~l-~--~lp~~l~~l~ 150 (328)
T 4fcg_A 80 QPGRVALELRSVP-LPQ--FPDQAFRLSHLQHMTIDAAG-LM--ELPDTMQQFAGLETLTLARNPL-R--ALPASIASLN 150 (328)
T ss_dssp STTCCEEEEESSC-CSS--CCSCGGGGTTCSEEEEESSC-CC--CCCSCGGGGTTCSEEEEESCCC-C--CCCGGGGGCT
T ss_pred ccceeEEEccCCC-chh--cChhhhhCCCCCEEECCCCC-cc--chhHHHhccCCCCEEECCCCcc-c--cCcHHHhcCc
Confidence 4667777777643 331 11112346677777776654 33 1223334566666666666532 1 1222233455
Q ss_pred CCcEEecCCC
Q 015721 177 NLEELGLLGC 186 (402)
Q Consensus 177 ~L~~L~l~~~ 186 (402)
+|++|++++|
T Consensus 151 ~L~~L~L~~n 160 (328)
T 4fcg_A 151 RLRELSIRAC 160 (328)
T ss_dssp TCCEEEEEEE
T ss_pred CCCEEECCCC
Confidence 5666665553
No 59
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.38 E-value=3.1e-12 Score=120.40 Aligned_cols=111 Identities=17% Similarity=0.108 Sum_probs=56.7
Q ss_pred cceEEeccCCcCCCCCCCCChhhHHHHHhhCCCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCCCCcChHHHHHHH
Q 015721 67 RLVELDLSQSVSRSFYPGVTDSDLAVIADGFKSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLTDKGLSAVA 146 (402)
Q Consensus 67 ~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 146 (402)
+++.|+++++........+ .++|+.|+++++. ++.. + ..+++|++|+++++. ++. ++.
T Consensus 41 ~l~~L~ls~n~L~~lp~~l-----------~~~L~~L~L~~N~-l~~l--p---~~l~~L~~L~Ls~N~-l~~--lp~-- 98 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCL-----------PAHITTLVIPDNN-LTSL--P---ALPPELRTLEVSGNQ-LTS--LPV-- 98 (622)
T ss_dssp CCCEEECCSSCCSCCCSCC-----------CTTCSEEEECSCC-CSCC--C---CCCTTCCEEEECSCC-CSC--CCC--
T ss_pred CCcEEEecCCCcCccChhh-----------CCCCcEEEecCCC-CCCC--C---CcCCCCCEEEcCCCc-CCc--CCC--
Confidence 4677777766533222111 2567777777653 3321 1 145677777777654 332 111
Q ss_pred hcCccCcEEecCCCccCChHHHHHHHHhCCCCcEEecCCCCCCchHHHHHHHhcCCCCCEEccCCC
Q 015721 147 EGCQDLRSLHLAGCKSVTDGTLQALSKNCRNLEELGLLGCTSISDSGVIDLVNGCQNIKFLDLNKC 212 (402)
Q Consensus 147 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 212 (402)
.+++|++|+++++.. .. ++. .+++|+.|+++++ .++. ++ ..+++|++|+++++
T Consensus 99 -~l~~L~~L~Ls~N~l-~~--l~~---~l~~L~~L~L~~N-~l~~--lp---~~l~~L~~L~Ls~N 151 (622)
T 3g06_A 99 -LPPGLLELSIFSNPL-TH--LPA---LPSGLCKLWIFGN-QLTS--LP---VLPPGLQELSVSDN 151 (622)
T ss_dssp -CCTTCCEEEECSCCC-CC--CCC---CCTTCCEEECCSS-CCSC--CC---CCCTTCCEEECCSS
T ss_pred -CCCCCCEEECcCCcC-CC--CCC---CCCCcCEEECCCC-CCCc--CC---CCCCCCCEEECcCC
Confidence 466777777766532 21 111 3566666666653 2322 11 12366666666654
No 60
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.36 E-value=7e-15 Score=128.99 Aligned_cols=269 Identities=17% Similarity=0.181 Sum_probs=166.6
Q ss_pred CcceEEeccCCcCCCCCCCCChhhHHHHHhhCCCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCCCCcChHHHHHH
Q 015721 66 SRLVELDLSQSVSRSFYPGVTDSDLAVIADGFKSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLTDKGLSAV 145 (402)
Q Consensus 66 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 145 (402)
++++.|+++++... .+....+ ..+++|++|+++++. +.......+ ..+++|++|+++++. +.. ++.
T Consensus 54 ~~l~~L~l~~n~i~----~~~~~~~----~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~L~~n~-l~~--l~~- 119 (332)
T 2ft3_A 54 PDTTLLDLQNNDIS----ELRKDDF----KGLQHLYALVLVNNK-ISKIHEKAF-SPLRKLQKLYISKNH-LVE--IPP- 119 (332)
T ss_dssp TTCCEEECCSSCCC----EECTTTT----TTCTTCCEEECCSSC-CCEECGGGS-TTCTTCCEEECCSSC-CCS--CCS-
T ss_pred CCCeEEECCCCcCC----ccCHhHh----hCCCCCcEEECCCCc-cCccCHhHh-hCcCCCCEEECCCCc-CCc--cCc-
Confidence 67999999987532 2222122 468999999999865 554322333 568999999999875 432 111
Q ss_pred HhcCccCcEEecCCCccCChHHHHHHHHhCCCCcEEecCCCCCCchHH-HHHHHhcCCCCCEEccCCCCCCCcccHHHHH
Q 015721 146 AEGCQDLRSLHLAGCKSVTDGTLQALSKNCRNLEELGLLGCTSISDSG-VIDLVNGCQNIKFLDLNKCSNIGDNGISSVS 224 (402)
Q Consensus 146 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 224 (402)
...++|++|+++++.. ... ....+..+++|+.|+++++ .++..+ ....+..+ +|+.|+++++... . ++.
T Consensus 120 -~~~~~L~~L~l~~n~i-~~~-~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l-~L~~L~l~~n~l~-~--l~~-- 189 (332)
T 2ft3_A 120 -NLPSSLVELRIHDNRI-RKV-PKGVFSGLRNMNCIEMGGN-PLENSGFEPGAFDGL-KLNYLRISEAKLT-G--IPK-- 189 (332)
T ss_dssp -SCCTTCCEEECCSSCC-CCC-CSGGGSSCSSCCEEECCSC-CCBGGGSCTTSSCSC-CCSCCBCCSSBCS-S--CCS--
T ss_pred -cccccCCEEECCCCcc-Ccc-CHhHhCCCccCCEEECCCC-ccccCCCCcccccCC-ccCEEECcCCCCC-c--cCc--
Confidence 1237999999998743 221 1223456899999999985 443211 12233444 8999999885432 2 111
Q ss_pred hcCCCCCEEEecCCCCCChHHHHHHHHhCCCCcEEEecCCCCC--ChHHHHHHHHHhcCCCcEEEccCCCCCChHHHHHH
Q 015721 225 KSCSSLKTLKLLDCYKVGDKSILSLAKFCKNLETLIIGGCRDI--SDESIKHLAASCKSSLKNLRMDWCLNISDSSLSCI 302 (402)
Q Consensus 225 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~l~~~ 302 (402)
...++|++|+++++. +.... ...+..+++|+.|+++++.-. ....+.. .++|++|+++++ .++ .++..
T Consensus 190 ~~~~~L~~L~l~~n~-i~~~~-~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~-----l~~L~~L~L~~N-~l~--~lp~~ 259 (332)
T 2ft3_A 190 DLPETLNELHLDHNK-IQAIE-LEDLLRYSKLYRLGLGHNQIRMIENGSLSF-----LPTLRELHLDNN-KLS--RVPAG 259 (332)
T ss_dssp SSCSSCSCCBCCSSC-CCCCC-TTSSTTCTTCSCCBCCSSCCCCCCTTGGGG-----CTTCCEEECCSS-CCC--BCCTT
T ss_pred cccCCCCEEECCCCc-CCccC-HHHhcCCCCCCEEECCCCcCCcCChhHhhC-----CCCCCEEECCCC-cCe--ecChh
Confidence 123689999998853 32211 122335789999999886321 1222322 289999999987 454 34444
Q ss_pred HhcCCCCcEEeccCCCCCChHHHHHHHhc-----cCCCcEEEEeCCCCCHHHH-HHHHHhCCCCCEEeccCCC
Q 015721 303 LSQCRNLEALDIGCCEEVTDAAFQDLGEV-----ELSLKVLKVNCPKVTVVGI-GNVLEKCASLEYIDVRSCP 369 (402)
Q Consensus 303 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~~~l-~~~~~~~~~L~~L~l~~c~ 369 (402)
+..+++|+.|+++++. ++......+... .++|+.|++..+.+....+ ...+..+++|+.+++++|.
T Consensus 260 l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 260 LPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GGGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred hhcCccCCEEECCCCC-CCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 7889999999999854 544333333222 3478999996666653222 2334578999999998864
No 61
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.36 E-value=1.2e-14 Score=126.05 Aligned_cols=132 Identities=21% Similarity=0.224 Sum_probs=60.9
Q ss_pred CCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCCCCcChHH-HHHHHhcCccCcEEecCCCccCChHHHHHHHHhCC
Q 015721 98 KSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLTDKG-LSAVAEGCQDLRSLHLAGCKSVTDGTLQALSKNCR 176 (402)
Q Consensus 98 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 176 (402)
++|++|+++++. +..... .....+++|++|+++++. +...+ .+.....+++|++|+++++... . ++.....++
T Consensus 28 ~~l~~L~L~~n~-l~~i~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~--l~~~~~~l~ 101 (306)
T 2z66_A 28 SSATRLELESNK-LQSLPH-GVFDKLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDLSFNGVI-T--MSSNFLGLE 101 (306)
T ss_dssp TTCCEEECCSSC-CCCCCT-TTTTTCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEECCSCSEE-E--EEEEEETCT
T ss_pred CCCCEEECCCCc-cCccCH-hHhhccccCCEEECCCCc-cCcccCcccccccccccCEEECCCCccc-c--ChhhcCCCC
Confidence 467777776643 332111 112456677777776654 33111 0112234667777777665321 1 111122366
Q ss_pred CCcEEecCCCCCCchHHHHHHHhcCCCCCEEccCCCCCCCcccHHHHHhcCCCCCEEEecCC
Q 015721 177 NLEELGLLGCTSISDSGVIDLVNGCQNIKFLDLNKCSNIGDNGISSVSKSCSSLKTLKLLDC 238 (402)
Q Consensus 177 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 238 (402)
+|++|+++++ .+........+..+++|++|+++++..... .+.....+++|++|+++++
T Consensus 102 ~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n 160 (306)
T 2z66_A 102 QLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVA--FNGIFNGLSSLEVLKMAGN 160 (306)
T ss_dssp TCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEEC--STTTTTTCTTCCEEECTTC
T ss_pred CCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCcc--chhhcccCcCCCEEECCCC
Confidence 6666666653 222211112344556666666665432111 1122234556666666553
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.35 E-value=1.7e-14 Score=132.01 Aligned_cols=132 Identities=20% Similarity=0.138 Sum_probs=63.5
Q ss_pred CCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCCCCcChHHHHHHHhcCccCcEEecCCCccCChHHHHHHHHhCCC
Q 015721 98 KSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLTDKGLSAVAEGCQDLRSLHLAGCKSVTDGTLQALSKNCRN 177 (402)
Q Consensus 98 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 177 (402)
++++.|+++++. +.......+ ..+++|++|+++++. +.... +..+.++++|++|+++++. +... ....+..+++
T Consensus 75 ~~l~~L~L~~n~-i~~~~~~~~-~~l~~L~~L~Ls~n~-i~~~~-~~~~~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~ 148 (452)
T 3zyi_A 75 SNTRYLNLMENN-IQMIQADTF-RHLHHLEVLQLGRNS-IRQIE-VGAFNGLASLNTLELFDNW-LTVI-PSGAFEYLSK 148 (452)
T ss_dssp TTCSEEECCSSC-CCEECTTTT-TTCTTCCEEECCSSC-CCEEC-TTTTTTCTTCCEEECCSSC-CSBC-CTTTSSSCTT
T ss_pred CCccEEECcCCc-CceECHHHc-CCCCCCCEEECCCCc-cCCcC-hhhccCcccCCEEECCCCc-CCcc-ChhhhcccCC
Confidence 467777777643 433222222 456777777777654 33211 1223456677777776653 2211 1122234666
Q ss_pred CcEEecCCCCCCchHHHHHHHhcCCCCCEEccCCCCCCCcccHHHHHhcCCCCCEEEecCC
Q 015721 178 LEELGLLGCTSISDSGVIDLVNGCQNIKFLDLNKCSNIGDNGISSVSKSCSSLKTLKLLDC 238 (402)
Q Consensus 178 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 238 (402)
|++|+++++ .+... ....+..+++|+.|+++++..+..... .....+++|+.|+++++
T Consensus 149 L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~l~~~~~l~~i~~-~~~~~l~~L~~L~L~~n 206 (452)
T 3zyi_A 149 LRELWLRNN-PIESI-PSYAFNRVPSLMRLDLGELKKLEYISE-GAFEGLFNLKYLNLGMC 206 (452)
T ss_dssp CCEEECCSC-CCCEE-CTTTTTTCTTCCEEECCCCTTCCEECT-TTTTTCTTCCEEECTTS
T ss_pred CCEEECCCC-Cccee-CHhHHhcCCcccEEeCCCCCCccccCh-hhccCCCCCCEEECCCC
Confidence 666666653 23211 112344556666666665444433211 11224455566655553
No 63
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.34 E-value=1.4e-14 Score=133.48 Aligned_cols=148 Identities=21% Similarity=0.194 Sum_probs=68.7
Q ss_pred hcCcceEEeccCCcCCCCCCCCChhhHHHHHhhCCCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCCCCcChHHHH
Q 015721 64 RFSRLVELDLSQSVSRSFYPGVTDSDLAVIADGFKSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLTDKGLS 143 (402)
Q Consensus 64 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 143 (402)
.+++|+.|+++++.. ..+....+ ..+++|+.|+++++. +..... ...+++|++|+++++. +....
T Consensus 32 ~~~~L~~L~Ls~n~l----~~~~~~~~----~~l~~L~~L~Ls~N~-l~~~~~---l~~l~~L~~L~Ls~N~-l~~l~-- 96 (487)
T 3oja_A 32 SAWNVKELDLSGNPL----SQISAADL----APFTKLELLNLSSNV-LYETLD---LESLSTLRTLDLNNNY-VQELL-- 96 (487)
T ss_dssp TGGGCCEEECCSSCC----CCCCGGGG----TTCTTCCEEECTTSC-CEEEEE---CTTCTTCCEEECCSSE-EEEEE--
T ss_pred cCCCccEEEeeCCcC----CCCCHHHH----hCCCCCCEEEeeCCC-CCCCcc---cccCCCCCEEEecCCc-CCCCC--
Confidence 334666777766542 22221111 346666677666643 332111 2456666666666654 33211
Q ss_pred HHHhcCccCcEEecCCCccCChHHHHHHHHhCCCCcEEecCCCCCCchHHHHHHHhcCCCCCEEccCCCCCCCcccHHHH
Q 015721 144 AVAEGCQDLRSLHLAGCKSVTDGTLQALSKNCRNLEELGLLGCTSISDSGVIDLVNGCQNIKFLDLNKCSNIGDNGISSV 223 (402)
Q Consensus 144 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 223 (402)
..++|+.|+++++.. ..... ..+++|+.|+++++ .++.. .+..+..+++|+.|+++++ .+.......+
T Consensus 97 ----~~~~L~~L~L~~N~l-~~~~~----~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l 164 (487)
T 3oja_A 97 ----VGPSIETLHAANNNI-SRVSC----SRGQGKKNIYLANN-KITML-RDLDEGCRSRVQYLDLKLN-EIDTVNFAEL 164 (487)
T ss_dssp ----ECTTCCEEECCSSCC-CCEEE----CCCSSCEEEECCSS-CCCSG-GGBCGGGGSSEEEEECTTS-CCCEEEGGGG
T ss_pred ----CCCCcCEEECcCCcC-CCCCc----cccCCCCEEECCCC-CCCCC-CchhhcCCCCCCEEECCCC-CCCCcChHHH
Confidence 235666666666532 21111 12456666666653 22221 1112344566666666653 2322222223
Q ss_pred HhcCCCCCEEEecCC
Q 015721 224 SKSCSSLKTLKLLDC 238 (402)
Q Consensus 224 ~~~~~~L~~L~l~~~ 238 (402)
...+++|+.|+++++
T Consensus 165 ~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 165 AASSDTLEHLNLQYN 179 (487)
T ss_dssp GGGTTTCCEEECTTS
T ss_pred hhhCCcccEEecCCC
Confidence 334555666666554
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.33 E-value=8.3e-15 Score=127.23 Aligned_cols=154 Identities=14% Similarity=0.207 Sum_probs=61.2
Q ss_pred CCCCEEccCCCCCCCcccHHHHHhcCCCCCEEEecCCCCCChHHHHHHH--HhCCCCcEEEecCCCCCCh--HHHHHHHH
Q 015721 202 QNIKFLDLNKCSNIGDNGISSVSKSCSSLKTLKLLDCYKVGDKSILSLA--KFCKNLETLIIGGCRDISD--ESIKHLAA 277 (402)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~--~~~~~l~~ 277 (402)
++|++|+++++.. ... .+.....+++|++|+++++............ ..+++|+.|+++++. ++. .....+..
T Consensus 149 ~~L~~L~L~~N~l-~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~ 225 (312)
T 1wwl_A 149 PGLKVLSIAQAHS-LNF-SCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAA 225 (312)
T ss_dssp TTCCEEEEESCSC-CCC-CTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHH
T ss_pred CCCcEEEeeCCCC-ccc-hHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHh
Confidence 5555555555322 111 1112224555666666554322211111111 334555566555542 221 11111111
Q ss_pred HhcCCCcEEEccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhccCCCcEEEEeCCCCCHHHHHHHHHhC
Q 015721 278 SCKSSLKNLRMDWCLNISDSSLSCILSQCRNLEALDIGCCEEVTDAAFQDLGEVELSLKVLKVNCPKVTVVGIGNVLEKC 357 (402)
Q Consensus 278 ~~~~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~ 357 (402)
.. ++|++|+++++ .++.......+..+++|+.|+++++. ++. ++. ...++|+.|+++.|.++.. +. +..+
T Consensus 226 ~l-~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~--ip~--~~~~~L~~L~Ls~N~l~~~--p~-~~~l 295 (312)
T 1wwl_A 226 AR-VQLQGLDLSHN-SLRDAAGAPSCDWPSQLNSLNLSFTG-LKQ--VPK--GLPAKLSVLDLSYNRLDRN--PS-PDEL 295 (312)
T ss_dssp TT-CCCSEEECTTS-CCCSSCCCSCCCCCTTCCEEECTTSC-CSS--CCS--SCCSEEEEEECCSSCCCSC--CC-TTTS
T ss_pred cC-CCCCEEECCCC-cCCcccchhhhhhcCCCCEEECCCCc-cCh--hhh--hccCCceEEECCCCCCCCC--hh-HhhC
Confidence 22 55556655554 22211000112334556666665532 221 100 0013555555555555443 11 3345
Q ss_pred CCCCEEeccCC
Q 015721 358 ASLEYIDVRSC 368 (402)
Q Consensus 358 ~~L~~L~l~~c 368 (402)
++|+.|+++++
T Consensus 296 ~~L~~L~L~~N 306 (312)
T 1wwl_A 296 PQVGNLSLKGN 306 (312)
T ss_dssp CEEEEEECTTC
T ss_pred CCCCEEeccCC
Confidence 55555555554
No 65
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.32 E-value=2.7e-14 Score=130.30 Aligned_cols=132 Identities=23% Similarity=0.222 Sum_probs=72.7
Q ss_pred CCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCCCCcChHHHHHHHhcCccCcEEecCCCccCChHHHHHHHHhCCC
Q 015721 98 KSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLTDKGLSAVAEGCQDLRSLHLAGCKSVTDGTLQALSKNCRN 177 (402)
Q Consensus 98 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 177 (402)
++++.|+++++. +.......+ ..+++|++|+++++. +.... +..+.++++|++|+++++. +... ....+..+++
T Consensus 64 ~~l~~L~L~~n~-i~~~~~~~~-~~l~~L~~L~Ls~n~-i~~i~-~~~~~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~ 137 (440)
T 3zyj_A 64 TNTRLLNLHENQ-IQIIKVNSF-KHLRHLEILQLSRNH-IRTIE-IGAFNGLANLNTLELFDNR-LTTI-PNGAFVYLSK 137 (440)
T ss_dssp TTCSEEECCSCC-CCEECTTTT-SSCSSCCEEECCSSC-CCEEC-GGGGTTCSSCCEEECCSSC-CSSC-CTTTSCSCSS
T ss_pred CCCcEEEccCCc-CCeeCHHHh-hCCCCCCEEECCCCc-CCccC-hhhccCCccCCEEECCCCc-CCee-CHhHhhcccc
Confidence 578888888754 443332233 467788888887764 43211 1233557788888887753 2211 1122334677
Q ss_pred CcEEecCCCCCCchHHHHHHHhcCCCCCEEccCCCCCCCcccHHHHHhcCCCCCEEEecCC
Q 015721 178 LEELGLLGCTSISDSGVIDLVNGCQNIKFLDLNKCSNIGDNGISSVSKSCSSLKTLKLLDC 238 (402)
Q Consensus 178 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 238 (402)
|++|+++++ .+... ....+..+++|++|+++++..+.... ...+..+++|++|+++++
T Consensus 138 L~~L~L~~N-~i~~~-~~~~~~~l~~L~~L~l~~~~~l~~i~-~~~~~~l~~L~~L~L~~n 195 (440)
T 3zyj_A 138 LKELWLRNN-PIESI-PSYAFNRIPSLRRLDLGELKRLSYIS-EGAFEGLSNLRYLNLAMC 195 (440)
T ss_dssp CCEEECCSC-CCCEE-CTTTTTTCTTCCEEECCCCTTCCEEC-TTTTTTCSSCCEEECTTS
T ss_pred CceeeCCCC-ccccc-CHHHhhhCcccCEeCCCCCCCcceeC-cchhhcccccCeecCCCC
Confidence 777777763 33321 11234556777777777655444321 112334566777777664
No 66
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.32 E-value=2.5e-15 Score=130.36 Aligned_cols=236 Identities=15% Similarity=0.126 Sum_probs=145.7
Q ss_pred CCCCCeEecCCCCCcChHHHHHHHhcCccCcEEecCCCccCChHHHHHHHHhCCCCcEEecCCCCCCchHHHHHHHhcCC
Q 015721 123 LCSLQSLDLSYCRKLTDKGLSAVAEGCQDLRSLHLAGCKSVTDGTLQALSKNCRNLEELGLLGCTSISDSGVIDLVNGCQ 202 (402)
Q Consensus 123 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 202 (402)
.++|++|+++++. +... ....+..+++|++|+++++..............+++|++|+++++ .+.. +...+..++
T Consensus 27 ~~~l~~L~L~~n~-l~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~--l~~~~~~l~ 101 (306)
T 2z66_A 27 PSSATRLELESNK-LQSL-PHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVIT--MSSNFLGLE 101 (306)
T ss_dssp CTTCCEEECCSSC-CCCC-CTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC-SEEE--EEEEEETCT
T ss_pred CCCCCEEECCCCc-cCcc-CHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC-cccc--ChhhcCCCC
Confidence 3689999999875 4421 122346789999999998743211111122334899999999985 3332 222356789
Q ss_pred CCCEEccCCCCCCCcccHHHHHhcCCCCCEEEecCCCCCChHHHHHHHHhCCCCcEEEecCCCCCChHHHHHHHHHhcCC
Q 015721 203 NIKFLDLNKCSNIGDNGISSVSKSCSSLKTLKLLDCYKVGDKSILSLAKFCKNLETLIIGGCRDISDESIKHLAASCKSS 282 (402)
Q Consensus 203 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~ 282 (402)
+|++|+++++..... ........+++|++|+++++... .. ....+..+++|+.|+++++. +........... .++
T Consensus 102 ~L~~L~l~~n~l~~~-~~~~~~~~l~~L~~L~l~~n~l~-~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~-l~~ 176 (306)
T 2z66_A 102 QLEHLDFQHSNLKQM-SEFSVFLSLRNLIYLDISHTHTR-VA-FNGIFNGLSSLEVLKMAGNS-FQENFLPDIFTE-LRN 176 (306)
T ss_dssp TCCEEECTTSEEESS-TTTTTTTTCTTCCEEECTTSCCE-EC-STTTTTTCTTCCEEECTTCE-EGGGEECSCCTT-CTT
T ss_pred CCCEEECCCCccccc-ccchhhhhccCCCEEECCCCcCC-cc-chhhcccCcCCCEEECCCCc-cccccchhHHhh-CcC
Confidence 999999998532221 11123446789999999986422 11 12233457899999998763 222111111112 278
Q ss_pred CcEEEccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhccCCCcEEEEeCCCCCHHHHHHHHHhC-CCCC
Q 015721 283 LKNLRMDWCLNISDSSLSCILSQCRNLEALDIGCCEEVTDAAFQDLGEVELSLKVLKVNCPKVTVVGIGNVLEKC-ASLE 361 (402)
Q Consensus 283 L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~-~~L~ 361 (402)
|++|+++++ .++.. ....+..+++|+.|+++++. ++...... ....++|+.|+++.+.++...... +..+ ++|+
T Consensus 177 L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~L~~N~-l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~-~~~~~~~L~ 251 (306)
T 2z66_A 177 LTFLDLSQC-QLEQL-SPTAFNSLSSLQVLNMSHNN-FFSLDTFP-YKCLNSLQVLDYSLNHIMTSKKQE-LQHFPSSLA 251 (306)
T ss_dssp CCEEECTTS-CCCEE-CTTTTTTCTTCCEEECTTSC-CSBCCSGG-GTTCTTCCEEECTTSCCCBCSSSS-CCCCCTTCC
T ss_pred CCEEECCCC-CcCCc-CHHHhcCCCCCCEEECCCCc-cCccChhh-ccCcccCCEeECCCCCCcccCHHH-HHhhhccCC
Confidence 999999987 44421 12346788999999999865 33221111 234569999999777776533222 2345 4899
Q ss_pred EEeccCCCCCCH
Q 015721 362 YIDVRSCPHVTQ 373 (402)
Q Consensus 362 ~L~l~~c~~~~~ 373 (402)
.|++++++...+
T Consensus 252 ~L~L~~N~~~~~ 263 (306)
T 2z66_A 252 FLNLTQNDFACT 263 (306)
T ss_dssp EEECTTCCEECS
T ss_pred EEEccCCCeecc
Confidence 999999776543
No 67
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.31 E-value=4.6e-12 Score=109.54 Aligned_cols=191 Identities=24% Similarity=0.227 Sum_probs=108.5
Q ss_pred CCCCCeEecCCCCCcChHHHHHHHhcCccCcEEecCCCccCChHHHHHHHHhCCCCcEEecCCCCCCchHHHHHHHhcCC
Q 015721 123 LCSLQSLDLSYCRKLTDKGLSAVAEGCQDLRSLHLAGCKSVTDGTLQALSKNCRNLEELGLLGCTSISDSGVIDLVNGCQ 202 (402)
Q Consensus 123 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 202 (402)
+++|++|+++++. +.. ++. ...+++|++|+++++...... . ...+++|++|+++++. +... ..+..++
T Consensus 40 l~~L~~L~l~~~~-i~~--l~~-~~~l~~L~~L~L~~n~i~~~~---~-~~~l~~L~~L~L~~n~-l~~~---~~~~~l~ 107 (308)
T 1h6u_A 40 LDGITTLSAFGTG-VTT--IEG-VQYLNNLIGLELKDNQITDLA---P-LKNLTKITELELSGNP-LKNV---SAIAGLQ 107 (308)
T ss_dssp HHTCCEEECTTSC-CCC--CTT-GGGCTTCCEEECCSSCCCCCG---G-GTTCCSCCEEECCSCC-CSCC---GGGTTCT
T ss_pred cCCcCEEEeeCCC-ccC--chh-hhccCCCCEEEccCCcCCCCh---h-HccCCCCCEEEccCCc-CCCc---hhhcCCC
Confidence 5688888888765 432 122 356888888888886432221 1 4557888888888743 4331 1356678
Q ss_pred CCCEEccCCCCCCCcccHHHHHhcCCCCCEEEecCCCCCChHHHHHHHHhCCCCcEEEecCCCCCChHHHHHHHHHhcCC
Q 015721 203 NIKFLDLNKCSNIGDNGISSVSKSCSSLKTLKLLDCYKVGDKSILSLAKFCKNLETLIIGGCRDISDESIKHLAASCKSS 282 (402)
Q Consensus 203 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~ 282 (402)
+|++|+++++..... +. ...+++|++|+++++....... ...+++|+.|+++++. +++... + .. .++
T Consensus 108 ~L~~L~l~~n~l~~~---~~-l~~l~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~l~~n~-l~~~~~--l-~~-l~~ 174 (308)
T 1h6u_A 108 SIKTLDLTSTQITDV---TP-LAGLSNLQVLYLDLNQITNISP----LAGLTNLQYLSIGNAQ-VSDLTP--L-AN-LSK 174 (308)
T ss_dssp TCCEEECTTSCCCCC---GG-GTTCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECCSSC-CCCCGG--G-TT-CTT
T ss_pred CCCEEECCCCCCCCc---hh-hcCCCCCCEEECCCCccCcCcc----ccCCCCccEEEccCCc-CCCChh--h-cC-CCC
Confidence 888888887543222 12 4467778888887753222111 3446777777776653 222111 1 12 267
Q ss_pred CcEEEccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhccCCCcEEEEeCCCCC
Q 015721 283 LKNLRMDWCLNISDSSLSCILSQCRNLEALDIGCCEEVTDAAFQDLGEVELSLKVLKVNCPKVT 346 (402)
Q Consensus 283 L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 346 (402)
|++|+++++ .+++ +.. +..+++|+.|++++|. +++.. . ...+++|+.|++..+.++
T Consensus 175 L~~L~l~~n-~l~~--~~~-l~~l~~L~~L~L~~N~-l~~~~--~-l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 175 LTTLKADDN-KISD--ISP-LASLPNLIEVHLKNNQ-ISDVS--P-LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CCEEECCSS-CCCC--CGG-GGGCTTCCEEECTTSC-CCBCG--G-GTTCTTCCEEEEEEEEEE
T ss_pred CCEEECCCC-ccCc--Chh-hcCCCCCCEEEccCCc-cCccc--c-ccCCCCCCEEEccCCeee
Confidence 777777766 3331 111 5667777777777644 32221 1 233446777777444443
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.30 E-value=2.2e-13 Score=125.53 Aligned_cols=238 Identities=16% Similarity=0.084 Sum_probs=161.0
Q ss_pred hCCCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCCCCcChHHHHHHHhcCccCcEEecCCCccCChHHHHHHHHhC
Q 015721 96 GFKSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLTDKGLSAVAEGCQDLRSLHLAGCKSVTDGTLQALSKNC 175 (402)
Q Consensus 96 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 175 (402)
.+++|+.|+++++. +.......+ ..+++|++|+++++. +.... + +..+++|++|+++++. +.... ..
T Consensus 32 ~~~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~Ls~N~-l~~~~-~--l~~l~~L~~L~Ls~N~-l~~l~------~~ 98 (487)
T 3oja_A 32 SAWNVKELDLSGNP-LSQISAADL-APFTKLELLNLSSNV-LYETL-D--LESLSTLRTLDLNNNY-VQELL------VG 98 (487)
T ss_dssp TGGGCCEEECCSSC-CCCCCGGGG-TTCTTCCEEECTTSC-CEEEE-E--CTTCTTCCEEECCSSE-EEEEE------EC
T ss_pred cCCCccEEEeeCCc-CCCCCHHHH-hCCCCCCEEEeeCCC-CCCCc-c--cccCCCCCEEEecCCc-CCCCC------CC
Confidence 34589999999864 554322233 578999999999976 43211 1 5678999999999974 32211 25
Q ss_pred CCCcEEecCCCCCCchHHHHHHHhcCCCCCEEccCCCCCCCcccHHHHHhcCCCCCEEEecCCCCCChHHHHHHHHhCCC
Q 015721 176 RNLEELGLLGCTSISDSGVIDLVNGCQNIKFLDLNKCSNIGDNGISSVSKSCSSLKTLKLLDCYKVGDKSILSLAKFCKN 255 (402)
Q Consensus 176 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 255 (402)
++|+.|+++++ .++... ...+++|+.|+++++..... .+.....+++|+.|+++++. +.......+...+++
T Consensus 99 ~~L~~L~L~~N-~l~~~~----~~~l~~L~~L~L~~N~l~~~--~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~~l~~ 170 (487)
T 3oja_A 99 PSIETLHAANN-NISRVS----CSRGQGKKNIYLANNKITML--RDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDT 170 (487)
T ss_dssp TTCCEEECCSS-CCCCEE----ECCCSSCEEEECCSSCCCSG--GGBCGGGGSSEEEEECTTSC-CCEEEGGGGGGGTTT
T ss_pred CCcCEEECcCC-cCCCCC----ccccCCCCEEECCCCCCCCC--CchhhcCCCCCCEEECCCCC-CCCcChHHHhhhCCc
Confidence 89999999985 343311 23468999999998653322 12233467899999999864 443333334445899
Q ss_pred CcEEEecCCCCCChH-HHHHHHHHhcCCCcEEEccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhccCC
Q 015721 256 LETLIIGGCRDISDE-SIKHLAASCKSSLKNLRMDWCLNISDSSLSCILSQCRNLEALDIGCCEEVTDAAFQDLGEVELS 334 (402)
Q Consensus 256 L~~L~l~~~~~~~~~-~~~~l~~~~~~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 334 (402)
|+.|+++++. ++.. ... ..++|+.|+++++ .++. ++.-+..+++|+.|+++++. ++. ++.....+++
T Consensus 171 L~~L~Ls~N~-l~~~~~~~-----~l~~L~~L~Ls~N-~l~~--~~~~~~~l~~L~~L~Ls~N~-l~~--lp~~l~~l~~ 238 (487)
T 3oja_A 171 LEHLNLQYNF-IYDVKGQV-----VFAKLKTLDLSSN-KLAF--MGPEFQSAAGVTWISLRNNK-LVL--IEKALRFSQN 238 (487)
T ss_dssp CCEEECTTSC-CCEEECCC-----CCTTCCEEECCSS-CCCE--ECGGGGGGTTCSEEECTTSC-CCE--ECTTCCCCTT
T ss_pred ccEEecCCCc-cccccccc-----cCCCCCEEECCCC-CCCC--CCHhHcCCCCccEEEecCCc-Ccc--cchhhccCCC
Confidence 9999998874 3321 111 1389999999988 4542 32236788999999999855 432 2222344569
Q ss_pred CcEEEEeCCCCCHHHHHHHHHhCCCCCEEecc
Q 015721 335 LKVLKVNCPKVTVVGIGNVLEKCASLEYIDVR 366 (402)
Q Consensus 335 L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~ 366 (402)
|+.|+++.|.+....+..++..++.|+.+.+.
T Consensus 239 L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 99999988888866677777778888777774
No 69
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.29 E-value=3.2e-15 Score=129.84 Aligned_cols=131 Identities=13% Similarity=0.102 Sum_probs=69.4
Q ss_pred CCCCEEEccCCCCCCh--hHHHHHHhcCCCCCeEecCC-CCCcChHHHHHHHhcCccCcEEecCCCccCChHHHHHHHHh
Q 015721 98 KSLKLLNLQNCKGITD--AGIASIGSGLCSLQSLDLSY-CRKLTDKGLSAVAEGCQDLRSLHLAGCKSVTDGTLQALSKN 174 (402)
Q Consensus 98 ~~L~~L~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 174 (402)
.+++.|+++++. +.. .. +.....+++|++|++++ +. +... ++..+..+++|++|+++++.. .. .++..+..
T Consensus 50 ~~l~~L~L~~~~-l~~~~~~-~~~l~~l~~L~~L~L~~~n~-l~~~-~p~~l~~l~~L~~L~Ls~n~l-~~-~~p~~~~~ 123 (313)
T 1ogq_A 50 YRVNNLDLSGLN-LPKPYPI-PSSLANLPYLNFLYIGGINN-LVGP-IPPAIAKLTQLHYLYITHTNV-SG-AIPDFLSQ 123 (313)
T ss_dssp CCEEEEEEECCC-CSSCEEC-CGGGGGCTTCSEEEEEEETT-EESC-CCGGGGGCTTCSEEEEEEECC-EE-ECCGGGGG
T ss_pred ceEEEEECCCCC-ccCCccc-ChhHhCCCCCCeeeCCCCCc-cccc-CChhHhcCCCCCEEECcCCee-CC-cCCHHHhC
Confidence 578888888754 432 11 22235678888888874 32 3211 223345678888888877532 21 12222344
Q ss_pred CCCCcEEecCCCCCCchHHHHHHHhcCCCCCEEccCCCCCCCcccHHHHHhcCC-CCCEEEecCC
Q 015721 175 CRNLEELGLLGCTSISDSGVIDLVNGCQNIKFLDLNKCSNIGDNGISSVSKSCS-SLKTLKLLDC 238 (402)
Q Consensus 175 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~ 238 (402)
+++|++|+++++ .+.. .++..+..+++|++|+++++..... ++.....++ +|+.|+++++
T Consensus 124 l~~L~~L~Ls~N-~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~--~p~~l~~l~~~L~~L~L~~N 184 (313)
T 1ogq_A 124 IKTLVTLDFSYN-ALSG-TLPPSISSLPNLVGITFDGNRISGA--IPDSYGSFSKLFTSMTISRN 184 (313)
T ss_dssp CTTCCEEECCSS-EEES-CCCGGGGGCTTCCEEECCSSCCEEE--CCGGGGCCCTTCCEEECCSS
T ss_pred CCCCCEEeCCCC-ccCC-cCChHHhcCCCCCeEECcCCcccCc--CCHHHhhhhhcCcEEECcCC
Confidence 777777777763 2221 1223455667777777776432111 122222343 5666666553
No 70
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.29 E-value=7.7e-12 Score=96.29 Aligned_cols=105 Identities=18% Similarity=0.258 Sum_probs=66.6
Q ss_pred CCCEEEecCCCCCChHHHHHHHHhCCCCcEEEecCCCCCChHHHHHHHHH--hcCCCcEEEccCCCCCChHHHHHHHhcC
Q 015721 229 SLKTLKLLDCYKVGDKSILSLAKFCKNLETLIIGGCRDISDESIKHLAAS--CKSSLKNLRMDWCLNISDSSLSCILSQC 306 (402)
Q Consensus 229 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~--~~~~L~~L~l~~~~~~~~~~l~~~l~~~ 306 (402)
.|++|++++|. +++.++..+ ..+++|+.|++++|..+++.++..++.. ..++|++|++++|.++++.++.. +..+
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~-L~~~ 138 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIA-LHHF 138 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHH-GGGC
T ss_pred eEeEEeCcCCC-ccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHH-HhcC
Confidence 46777777654 666665555 3467777777777777777777777541 11467777777777777777665 4567
Q ss_pred CCCcEEeccCCCCCChHH--HHHHHhccCCCc
Q 015721 307 RNLEALDIGCCEEVTDAA--FQDLGEVELSLK 336 (402)
Q Consensus 307 ~~L~~L~l~~~~~~~~~~--~~~~~~~~~~L~ 336 (402)
++|++|++++|..+++.+ ...+....|+++
T Consensus 139 ~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 139 RNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170 (176)
T ss_dssp TTCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred CCCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence 777777777777776654 334444444443
No 71
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.29 E-value=1.7e-13 Score=131.30 Aligned_cols=88 Identities=18% Similarity=0.189 Sum_probs=39.6
Q ss_pred HhcCCCCcEEeccCCCCCChHHHHHHHhccCCCcEEEEeCCCCCHHHHHHHHHhCCCCCEEeccCCCCCCHhHHHhhccC
Q 015721 303 LSQCRNLEALDIGCCEEVTDAAFQDLGEVELSLKVLKVNCPKVTVVGIGNVLEKCASLEYIDVRSCPHVTQASCEEAGLQ 382 (402)
Q Consensus 303 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~ 382 (402)
+..+++|+.|++++|. ++...... ...+++|++|+++.|+++.... ..+..+++|+.|+++++. ++......+. .
T Consensus 490 ~~~l~~L~~L~Ls~N~-L~~l~~~~-f~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~-~ 564 (635)
T 4g8a_A 490 FTELRNLTFLDLSQCQ-LEQLSPTA-FNSLSSLQVLNMSHNNFFSLDT-FPYKCLNSLQVLDYSLNH-IMTSKKQELQ-H 564 (635)
T ss_dssp CTTCTTCCEEECTTSC-CCEECTTT-TTTCTTCCEEECTTSCCCBCCC-GGGTTCTTCCEEECTTSC-CCBCCSSCTT-C
T ss_pred hhhccccCEEECCCCc-cCCcChHH-HcCCCCCCEEECCCCcCCCCCh-hHHhCCCCCCEEECCCCc-CCCCCHHHHH-h
Confidence 4455566666666542 22211111 1223366666665555543221 112355666666666543 2222112222 2
Q ss_pred C-CCcceEeccccc
Q 015721 383 F-PQCCKVNFAGCL 395 (402)
Q Consensus 383 ~-p~l~~l~~~~~~ 395 (402)
+ ++++.++++|+|
T Consensus 565 l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 565 FPSSLAFLNLTQND 578 (635)
T ss_dssp CCTTCCEEECTTCC
T ss_pred hhCcCCEEEeeCCC
Confidence 3 356666666544
No 72
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.29 E-value=1.4e-11 Score=106.52 Aligned_cols=189 Identities=20% Similarity=0.202 Sum_probs=101.1
Q ss_pred CCCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCCCCcChHHHHHHHhcCccCcEEecCCCccCChHHHHHHHHhCC
Q 015721 97 FKSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLTDKGLSAVAEGCQDLRSLHLAGCKSVTDGTLQALSKNCR 176 (402)
Q Consensus 97 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 176 (402)
+++|++|++.++. +... ..+ ..+++|++|+++++. +.... . ...+++|++|+++++. +... +. ...++
T Consensus 40 l~~L~~L~l~~~~-i~~l--~~~-~~l~~L~~L~L~~n~-i~~~~--~-~~~l~~L~~L~L~~n~-l~~~--~~-~~~l~ 107 (308)
T 1h6u_A 40 LDGITTLSAFGTG-VTTI--EGV-QYLNNLIGLELKDNQ-ITDLA--P-LKNLTKITELELSGNP-LKNV--SA-IAGLQ 107 (308)
T ss_dssp HHTCCEEECTTSC-CCCC--TTG-GGCTTCCEEECCSSC-CCCCG--G-GTTCCSCCEEECCSCC-CSCC--GG-GTTCT
T ss_pred cCCcCEEEeeCCC-ccCc--hhh-hccCCCCEEEccCCc-CCCCh--h-HccCCCCCEEEccCCc-CCCc--hh-hcCCC
Confidence 4456666666543 2221 112 345666666666554 33211 1 3456666666666653 2221 11 23366
Q ss_pred CCcEEecCCCCCCchHHHHHHHhcCCCCCEEccCCCCCCCcccHHHHHhcCCCCCEEEecCCCCCChHHHHHHHHhCCCC
Q 015721 177 NLEELGLLGCTSISDSGVIDLVNGCQNIKFLDLNKCSNIGDNGISSVSKSCSSLKTLKLLDCYKVGDKSILSLAKFCKNL 256 (402)
Q Consensus 177 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 256 (402)
+|++|+++++ .+... . .+..+++|++|+++++....... ...+++|+.|+++++. +.... . ...+++|
T Consensus 108 ~L~~L~l~~n-~l~~~--~-~l~~l~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~l~~n~-l~~~~--~-l~~l~~L 175 (308)
T 1h6u_A 108 SIKTLDLTST-QITDV--T-PLAGLSNLQVLYLDLNQITNISP----LAGLTNLQYLSIGNAQ-VSDLT--P-LANLSKL 175 (308)
T ss_dssp TCCEEECTTS-CCCCC--G-GGTTCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECCSSC-CCCCG--G-GTTCTTC
T ss_pred CCCEEECCCC-CCCCc--h-hhcCCCCCCEEECCCCccCcCcc----ccCCCCccEEEccCCc-CCCCh--h-hcCCCCC
Confidence 6777777663 23321 1 15566777777777643322211 3456777777777653 22211 1 3446778
Q ss_pred cEEEecCCCCCChHHHHHHHHHhcCCCcEEEccCCCCCChHHHHHHHhcCCCCcEEeccCCC
Q 015721 257 ETLIIGGCRDISDESIKHLAASCKSSLKNLRMDWCLNISDSSLSCILSQCRNLEALDIGCCE 318 (402)
Q Consensus 257 ~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~ 318 (402)
+.|+++++.-.....+ .. .++|++|+++++ .+++. .. +..+++|+.|+++++.
T Consensus 176 ~~L~l~~n~l~~~~~l----~~-l~~L~~L~L~~N-~l~~~--~~-l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 176 TTLKADDNKISDISPL----AS-LPNLIEVHLKNN-QISDV--SP-LANTSNLFIVTLTNQT 228 (308)
T ss_dssp CEEECCSSCCCCCGGG----GG-CTTCCEEECTTS-CCCBC--GG-GTTCTTCCEEEEEEEE
T ss_pred CEEECCCCccCcChhh----cC-CCCCCEEEccCC-ccCcc--cc-ccCCCCCCEEEccCCe
Confidence 8888876532221111 22 278888888877 34421 22 6788888888888754
No 73
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.29 E-value=2.9e-15 Score=130.09 Aligned_cols=157 Identities=17% Similarity=0.157 Sum_probs=79.8
Q ss_pred CcceEEeccCCcCCCCCCCCChhhHHHHHhhCCCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCCCCcChHHHHHH
Q 015721 66 SRLVELDLSQSVSRSFYPGVTDSDLAVIADGFKSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLTDKGLSAV 145 (402)
Q Consensus 66 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 145 (402)
.++++|+++++...... ..... ...+++|++|+++++..+.......+ ..+++|++|+++++. +.. .++..
T Consensus 50 ~~l~~L~L~~~~l~~~~--~~~~~----l~~l~~L~~L~L~~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~-l~~-~~p~~ 120 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPY--PIPSS----LANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTN-VSG-AIPDF 120 (313)
T ss_dssp CCEEEEEEECCCCSSCE--ECCGG----GGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEEC-CEE-ECCGG
T ss_pred ceEEEEECCCCCccCCc--ccChh----HhCCCCCCeeeCCCCCcccccCChhH-hcCCCCCEEECcCCe-eCC-cCCHH
Confidence 56777877765431100 11111 24577888888874222332222222 467788888887654 321 12233
Q ss_pred HhcCccCcEEecCCCccCChHHHHHHHHhCCCCcEEecCCCCCCchHHHHHHHhcCC-CCCEEccCCCCCCCcccHHHHH
Q 015721 146 AEGCQDLRSLHLAGCKSVTDGTLQALSKNCRNLEELGLLGCTSISDSGVIDLVNGCQ-NIKFLDLNKCSNIGDNGISSVS 224 (402)
Q Consensus 146 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~ 224 (402)
+..+++|++|+++++.... .++.....+++|++|+++++ .++.. ++..+..++ +|+.|+++++..... .+...
T Consensus 121 ~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~N-~l~~~-~p~~l~~l~~~L~~L~L~~N~l~~~--~~~~~ 194 (313)
T 1ogq_A 121 LSQIKTLVTLDFSYNALSG--TLPPSISSLPNLVGITFDGN-RISGA-IPDSYGSFSKLFTSMTISRNRLTGK--IPPTF 194 (313)
T ss_dssp GGGCTTCCEEECCSSEEES--CCCGGGGGCTTCCEEECCSS-CCEEE-CCGGGGCCCTTCCEEECCSSEEEEE--CCGGG
T ss_pred HhCCCCCCEEeCCCCccCC--cCChHHhcCCCCCeEECcCC-cccCc-CCHHHhhhhhcCcEEECcCCeeecc--CChHH
Confidence 4567788888887763221 12222344777888888774 33211 223345555 778888876432111 11122
Q ss_pred hcCCCCCEEEecCC
Q 015721 225 KSCSSLKTLKLLDC 238 (402)
Q Consensus 225 ~~~~~L~~L~l~~~ 238 (402)
..++ |+.|+++++
T Consensus 195 ~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 195 ANLN-LAFVDLSRN 207 (313)
T ss_dssp GGCC-CSEEECCSS
T ss_pred hCCc-ccEEECcCC
Confidence 2333 666666553
No 74
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.28 E-value=2.9e-11 Score=113.89 Aligned_cols=242 Identities=17% Similarity=0.145 Sum_probs=162.6
Q ss_pred CcceEEeccCCcCCCCCCCCChhhHHHHHhhCCCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCCCCcChHHHHHH
Q 015721 66 SRLVELDLSQSVSRSFYPGVTDSDLAVIADGFKSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLTDKGLSAV 145 (402)
Q Consensus 66 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 145 (402)
++|+.|+++++... .+.. .+++|+.|+++++. ++... ..+++|++|+++++. +.. ++.
T Consensus 61 ~~L~~L~L~~N~l~----~lp~--------~l~~L~~L~Ls~N~-l~~lp-----~~l~~L~~L~Ls~N~-l~~--l~~- 118 (622)
T 3g06_A 61 AHITTLVIPDNNLT----SLPA--------LPPELRTLEVSGNQ-LTSLP-----VLPPGLLELSIFSNP-LTH--LPA- 118 (622)
T ss_dssp TTCSEEEECSCCCS----CCCC--------CCTTCCEEEECSCC-CSCCC-----CCCTTCCEEEECSCC-CCC--CCC-
T ss_pred CCCcEEEecCCCCC----CCCC--------cCCCCCEEEcCCCc-CCcCC-----CCCCCCCEEECcCCc-CCC--CCC-
Confidence 68999999987632 2221 36899999999865 44321 267999999999875 443 111
Q ss_pred HhcCccCcEEecCCCccCChHHHHHHHHhCCCCcEEecCCCCCCchHHHHHHHhcCCCCCEEccCCCCCCCcccHHHHHh
Q 015721 146 AEGCQDLRSLHLAGCKSVTDGTLQALSKNCRNLEELGLLGCTSISDSGVIDLVNGCQNIKFLDLNKCSNIGDNGISSVSK 225 (402)
Q Consensus 146 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 225 (402)
.+++|+.|+++++. +.. + ...+++|++|+++++ .++. ++ ...++|+.|.++++. +.. ++ .
T Consensus 119 --~l~~L~~L~L~~N~-l~~--l---p~~l~~L~~L~Ls~N-~l~~--l~---~~~~~L~~L~L~~N~-l~~--l~---~ 178 (622)
T 3g06_A 119 --LPSGLCKLWIFGNQ-LTS--L---PVLPPGLQELSVSDN-QLAS--LP---ALPSELCKLWAYNNQ-LTS--LP---M 178 (622)
T ss_dssp --CCTTCCEEECCSSC-CSC--C---CCCCTTCCEEECCSS-CCSC--CC---CCCTTCCEEECCSSC-CSC--CC---C
T ss_pred --CCCCcCEEECCCCC-CCc--C---CCCCCCCCEEECcCC-cCCC--cC---CccCCCCEEECCCCC-CCC--Cc---c
Confidence 57899999999874 322 1 123689999999985 4433 11 245789999998854 333 22 4
Q ss_pred cCCCCCEEEecCCCCCChHHHHHHHHhCCCCcEEEecCCCCCChHHHHHHHHHhcCCCcEEEccCCCCCChHHHHHHHhc
Q 015721 226 SCSSLKTLKLLDCYKVGDKSILSLAKFCKNLETLIIGGCRDISDESIKHLAASCKSSLKNLRMDWCLNISDSSLSCILSQ 305 (402)
Q Consensus 226 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~l~~~l~~ 305 (402)
.+++|+.|+++++. +.. ++ ...++|+.|.++++. ++. +. ..+++|+.|+++++ .++. ++ ..
T Consensus 179 ~~~~L~~L~Ls~N~-l~~--l~---~~~~~L~~L~L~~N~-l~~-----l~-~~~~~L~~L~Ls~N-~L~~--lp---~~ 239 (622)
T 3g06_A 179 LPSGLQELSVSDNQ-LAS--LP---TLPSELYKLWAYNNR-LTS-----LP-ALPSGLKELIVSGN-RLTS--LP---VL 239 (622)
T ss_dssp CCTTCCEEECCSSC-CSC--CC---CCCTTCCEEECCSSC-CSS-----CC-CCCTTCCEEECCSS-CCSC--CC---CC
T ss_pred cCCCCcEEECCCCC-CCC--CC---CccchhhEEECcCCc-ccc-----cC-CCCCCCCEEEccCC-ccCc--CC---CC
Confidence 56889999999864 321 11 125789999998764 321 11 12378999999987 4542 22 56
Q ss_pred CCCCcEEeccCCCCCChHHHHHHHhccCCCcEEEEeCCCCCHHHHHHHHHhCCCCCEEeccCCCCCCHhHHH
Q 015721 306 CRNLEALDIGCCEEVTDAAFQDLGEVELSLKVLKVNCPKVTVVGIGNVLEKCASLEYIDVRSCPHVTQASCE 377 (402)
Q Consensus 306 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~ 377 (402)
+++|+.|++++|. ++. ++ ..+++|+.|+++.|.++. ++..+..+++|+.|++++|+ ++.....
T Consensus 240 l~~L~~L~Ls~N~-L~~--lp---~~~~~L~~L~Ls~N~L~~--lp~~l~~l~~L~~L~L~~N~-l~~~~~~ 302 (622)
T 3g06_A 240 PSELKELMVSGNR-LTS--LP---MLPSGLLSLSVYRNQLTR--LPESLIHLSSETTVNLEGNP-LSERTLQ 302 (622)
T ss_dssp CTTCCEEECCSSC-CSC--CC---CCCTTCCEEECCSSCCCS--CCGGGGGSCTTCEEECCSCC-CCHHHHH
T ss_pred CCcCcEEECCCCC-CCc--CC---cccccCcEEeCCCCCCCc--CCHHHhhccccCEEEecCCC-CCCcCHH
Confidence 7899999999854 432 22 155699999997778874 33446789999999999976 4444333
No 75
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.27 E-value=1.9e-13 Score=125.18 Aligned_cols=233 Identities=15% Similarity=0.057 Sum_probs=152.9
Q ss_pred CCCCeEecCCCCCcChHHHHHHHhcCccCcEEecCCCccCChHHHHHHHHhCCCCcEEecCCCCCCchHHHHHHHhcCCC
Q 015721 124 CSLQSLDLSYCRKLTDKGLSAVAEGCQDLRSLHLAGCKSVTDGTLQALSKNCRNLEELGLLGCTSISDSGVIDLVNGCQN 203 (402)
Q Consensus 124 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 203 (402)
+++++|+++++. +.... +..+..+++|++|+++++. +... ....+..+++|++|+++++ .++.. ....+..+++
T Consensus 75 ~~l~~L~L~~n~-i~~~~-~~~~~~l~~L~~L~Ls~n~-i~~~-~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~ 148 (452)
T 3zyi_A 75 SNTRYLNLMENN-IQMIQ-ADTFRHLHHLEVLQLGRNS-IRQI-EVGAFNGLASLNTLELFDN-WLTVI-PSGAFEYLSK 148 (452)
T ss_dssp TTCSEEECCSSC-CCEEC-TTTTTTCTTCCEEECCSSC-CCEE-CTTTTTTCTTCCEEECCSS-CCSBC-CTTTSSSCTT
T ss_pred CCccEEECcCCc-CceEC-HHHcCCCCCCCEEECCCCc-cCCc-ChhhccCcccCCEEECCCC-cCCcc-ChhhhcccCC
Confidence 689999999875 54321 2334678999999999873 3322 1223445899999999985 34431 1234567899
Q ss_pred CCEEccCCCCCCCcccHHHHHhcCCCCCEEEecCCCCCChHHHHHHHHhCCCCcEEEecCCCCCChHHHHHHHHHhcCCC
Q 015721 204 IKFLDLNKCSNIGDNGISSVSKSCSSLKTLKLLDCYKVGDKSILSLAKFCKNLETLIIGGCRDISDESIKHLAASCKSSL 283 (402)
Q Consensus 204 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L 283 (402)
|++|+++++. +... ....+..+++|+.|+++++..+.... ...+..+++|+.|+++++.-.....+. . .++|
T Consensus 149 L~~L~L~~N~-l~~~-~~~~~~~l~~L~~L~l~~~~~l~~i~-~~~~~~l~~L~~L~L~~n~l~~~~~~~----~-l~~L 220 (452)
T 3zyi_A 149 LRELWLRNNP-IESI-PSYAFNRVPSLMRLDLGELKKLEYIS-EGAFEGLFNLKYLNLGMCNIKDMPNLT----P-LVGL 220 (452)
T ss_dssp CCEEECCSCC-CCEE-CTTTTTTCTTCCEEECCCCTTCCEEC-TTTTTTCTTCCEEECTTSCCSSCCCCT----T-CTTC
T ss_pred CCEEECCCCC-ccee-CHhHHhcCCcccEEeCCCCCCccccC-hhhccCCCCCCEEECCCCccccccccc----c-cccc
Confidence 9999999854 3322 12234578999999999866554322 122345889999999886432221111 2 2799
Q ss_pred cEEEccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhccCCCcEEEEeCCCCCHHHHHHHHHhCCCCCEE
Q 015721 284 KNLRMDWCLNISDSSLSCILSQCRNLEALDIGCCEEVTDAAFQDLGEVELSLKVLKVNCPKVTVVGIGNVLEKCASLEYI 363 (402)
Q Consensus 284 ~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L 363 (402)
++|+++++ .++. .....+..+++|+.|+++++. ++......+ ..+++|+.|+++.|.++.... ..+..+++|+.|
T Consensus 221 ~~L~Ls~N-~l~~-~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L 295 (452)
T 3zyi_A 221 EELEMSGN-HFPE-IRPGSFHGLSSLKKLWVMNSQ-VSLIERNAF-DGLASLVELNLAHNNLSSLPH-DLFTPLRYLVEL 295 (452)
T ss_dssp CEEECTTS-CCSE-ECGGGGTTCTTCCEEECTTSC-CCEECTTTT-TTCTTCCEEECCSSCCSCCCT-TSSTTCTTCCEE
T ss_pred cEEECcCC-cCcc-cCcccccCccCCCEEEeCCCc-CceECHHHh-cCCCCCCEEECCCCcCCccCh-HHhccccCCCEE
Confidence 99999987 4442 123347789999999999854 433222222 344599999997777775332 234578999999
Q ss_pred eccCCCCCCHhH
Q 015721 364 DVRSCPHVTQAS 375 (402)
Q Consensus 364 ~l~~c~~~~~~~ 375 (402)
+++++|...+-.
T Consensus 296 ~L~~Np~~CdC~ 307 (452)
T 3zyi_A 296 HLHHNPWNCDCD 307 (452)
T ss_dssp ECCSSCEECSTT
T ss_pred EccCCCcCCCCC
Confidence 999987655433
No 76
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.25 E-value=2.6e-13 Score=123.78 Aligned_cols=234 Identities=15% Similarity=0.070 Sum_probs=153.3
Q ss_pred CCCCeEecCCCCCcChHHHHHHHhcCccCcEEecCCCccCChHHHHHHHHhCCCCcEEecCCCCCCchHHHHHHHhcCCC
Q 015721 124 CSLQSLDLSYCRKLTDKGLSAVAEGCQDLRSLHLAGCKSVTDGTLQALSKNCRNLEELGLLGCTSISDSGVIDLVNGCQN 203 (402)
Q Consensus 124 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 203 (402)
++++.|+++++. +.... +..+.++++|++|+++++. +.... ...+..+++|++|+++++ .++.. ....+..+++
T Consensus 64 ~~l~~L~L~~n~-i~~~~-~~~~~~l~~L~~L~Ls~n~-i~~i~-~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~ 137 (440)
T 3zyj_A 64 TNTRLLNLHENQ-IQIIK-VNSFKHLRHLEILQLSRNH-IRTIE-IGAFNGLANLNTLELFDN-RLTTI-PNGAFVYLSK 137 (440)
T ss_dssp TTCSEEECCSCC-CCEEC-TTTTSSCSSCCEEECCSSC-CCEEC-GGGGTTCSSCCEEECCSS-CCSSC-CTTTSCSCSS
T ss_pred CCCcEEEccCCc-CCeeC-HHHhhCCCCCCEEECCCCc-CCccC-hhhccCCccCCEEECCCC-cCCee-CHhHhhcccc
Confidence 689999999875 54322 1234678999999999874 33221 123445899999999984 44431 1224667899
Q ss_pred CCEEccCCCCCCCcccHHHHHhcCCCCCEEEecCCCCCChHHHHHHHHhCCCCcEEEecCCCCCChHHHHHHHHHhcCCC
Q 015721 204 IKFLDLNKCSNIGDNGISSVSKSCSSLKTLKLLDCYKVGDKSILSLAKFCKNLETLIIGGCRDISDESIKHLAASCKSSL 283 (402)
Q Consensus 204 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L 283 (402)
|++|+++++. +... ....+..+++|++|+++++..+.... ...+..+++|+.|+++++.-..-..+ .. .++|
T Consensus 138 L~~L~L~~N~-i~~~-~~~~~~~l~~L~~L~l~~~~~l~~i~-~~~~~~l~~L~~L~L~~n~l~~~~~~----~~-l~~L 209 (440)
T 3zyj_A 138 LKELWLRNNP-IESI-PSYAFNRIPSLRRLDLGELKRLSYIS-EGAFEGLSNLRYLNLAMCNLREIPNL----TP-LIKL 209 (440)
T ss_dssp CCEEECCSCC-CCEE-CTTTTTTCTTCCEEECCCCTTCCEEC-TTTTTTCSSCCEEECTTSCCSSCCCC----TT-CSSC
T ss_pred CceeeCCCCc-cccc-CHHHhhhCcccCEeCCCCCCCcceeC-cchhhcccccCeecCCCCcCcccccc----CC-Cccc
Confidence 9999999854 3322 12234468999999999865554322 12334589999999988643221111 12 2789
Q ss_pred cEEEccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhccCCCcEEEEeCCCCCHHHHHHHHHhCCCCCEE
Q 015721 284 KNLRMDWCLNISDSSLSCILSQCRNLEALDIGCCEEVTDAAFQDLGEVELSLKVLKVNCPKVTVVGIGNVLEKCASLEYI 363 (402)
Q Consensus 284 ~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L 363 (402)
++|+++++ .++.. ....+..+++|+.|+++++. ++......+ ..+++|+.|+++.|.++.... ..+..+++|+.|
T Consensus 210 ~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L 284 (440)
T 3zyj_A 210 DELDLSGN-HLSAI-RPGSFQGLMHLQKLWMIQSQ-IQVIERNAF-DNLQSLVEINLAHNNLTLLPH-DLFTPLHHLERI 284 (440)
T ss_dssp CEEECTTS-CCCEE-CTTTTTTCTTCCEEECTTCC-CCEECTTSS-TTCTTCCEEECTTSCCCCCCT-TTTSSCTTCCEE
T ss_pred CEEECCCC-ccCcc-ChhhhccCccCCEEECCCCc-eeEEChhhh-cCCCCCCEEECCCCCCCccCh-hHhccccCCCEE
Confidence 99999987 44421 12347789999999999854 433322222 334599999997777775433 234578999999
Q ss_pred eccCCCCCCHhHH
Q 015721 364 DVRSCPHVTQASC 376 (402)
Q Consensus 364 ~l~~c~~~~~~~~ 376 (402)
+++++|...+-.+
T Consensus 285 ~L~~Np~~CdC~l 297 (440)
T 3zyj_A 285 HLHHNPWNCNCDI 297 (440)
T ss_dssp ECCSSCEECSSTT
T ss_pred EcCCCCccCCCCc
Confidence 9999876654333
No 77
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.25 E-value=2.5e-10 Score=100.93 Aligned_cols=174 Identities=17% Similarity=0.257 Sum_probs=105.6
Q ss_pred CCCCcEEecCCCCCCchHHHHH---HHh-cCCCCCEEccCCCCCCCcccHHHHHhcCCCCCEEEecCCCCCChHHHHHHH
Q 015721 175 CRNLEELGLLGCTSISDSGVID---LVN-GCQNIKFLDLNKCSNIGDNGISSVSKSCSSLKTLKLLDCYKVGDKSILSLA 250 (402)
Q Consensus 175 ~~~L~~L~l~~~~~~~~~~~~~---~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 250 (402)
.++|+.|+++++ .++...... .+. ..++|++|+++++ .+++.++..+...+++|++|++++| .+++.+...+.
T Consensus 71 ~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~ 147 (372)
T 3un9_A 71 LSSLRQLNLAGV-RMTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLR 147 (372)
T ss_dssp HTTCCEEECTTS-CCCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHH
T ss_pred HhhCCEEEecCC-CCCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHH
Confidence 467888888874 455544332 222 2257888888874 4555555555555667788888775 45555544433
Q ss_pred H----hCCCCcEEEecCCCCCChHHHHHHHHHh--cCCCcEEEccCCCCCChHHH---HHHHhcCCCCcEEeccCCCCCC
Q 015721 251 K----FCKNLETLIIGGCRDISDESIKHLAASC--KSSLKNLRMDWCLNISDSSL---SCILSQCRNLEALDIGCCEEVT 321 (402)
Q Consensus 251 ~----~~~~L~~L~l~~~~~~~~~~~~~l~~~~--~~~L~~L~l~~~~~~~~~~l---~~~l~~~~~L~~L~l~~~~~~~ 321 (402)
. ..++|++|++++| .+++.....++... .++|++|+++++ .+++.+. ...+..+++|+.|++++| .++
T Consensus 148 ~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~ 224 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYN-GAG 224 (372)
T ss_dssp HHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSS-CCC
T ss_pred HHHHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCC-CCC
Confidence 2 2467778887775 45655555554321 366777777776 4655443 333456677777777774 466
Q ss_pred hHHHHHHHh---ccCCCcEEEEeCCCCCHHHHHHHH
Q 015721 322 DAAFQDLGE---VELSLKVLKVNCPKVTVVGIGNVL 354 (402)
Q Consensus 322 ~~~~~~~~~---~~~~L~~L~l~~~~~~~~~l~~~~ 354 (402)
+.+...+.. ..++|++|+++.|.+++.+...+.
T Consensus 225 ~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~ 260 (372)
T 3un9_A 225 DTAALALARAAREHPSLELLHLYFNELSSEGRQVLR 260 (372)
T ss_dssp HHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence 655554443 235777777766777776665554
No 78
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.24 E-value=3.7e-12 Score=109.03 Aligned_cols=206 Identities=17% Similarity=0.120 Sum_probs=97.0
Q ss_pred CCCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCCCCcChHHHHHHHhcCccCcEEecCCCccCChHHHHHHHHhCC
Q 015721 97 FKSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLTDKGLSAVAEGCQDLRSLHLAGCKSVTDGTLQALSKNCR 176 (402)
Q Consensus 97 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 176 (402)
.++|++|+++++. +.......+ ..+++|++|+++++. +.... +..+..+++|++|+++++..+.... +.....++
T Consensus 31 ~~~l~~L~l~~n~-i~~~~~~~~-~~~~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~~l~~~~-~~~~~~l~ 105 (285)
T 1ozn_A 31 PAASQRIFLHGNR-ISHVPAASF-RACRNLTILWLHSNV-LARID-AAAFTGLALLEQLDLSDNAQLRSVD-PATFHGLG 105 (285)
T ss_dssp CTTCSEEECTTSC-CCEECTTTT-TTCTTCCEEECCSSC-CCEEC-TTTTTTCTTCCEEECCSCTTCCCCC-TTTTTTCT
T ss_pred CCCceEEEeeCCc-CCccCHHHc-ccCCCCCEEECCCCc-cceeC-HhhcCCccCCCEEeCCCCCCccccC-HHHhcCCc
Confidence 3578888887744 443322222 456778888887754 43211 2233457777788777754222211 12233467
Q ss_pred CCcEEecCCCCCCchHHHHHHHhcCCCCCEEccCCCCCCCcccHHHHHhcCCCCCEEEecCCCCCChHHHHHHHHhCCCC
Q 015721 177 NLEELGLLGCTSISDSGVIDLVNGCQNIKFLDLNKCSNIGDNGISSVSKSCSSLKTLKLLDCYKVGDKSILSLAKFCKNL 256 (402)
Q Consensus 177 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 256 (402)
+|++|+++++. +... ....+..+++|++|+++++... .. .......+++|++|+++++. +.... ...+..+++|
T Consensus 106 ~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~l~-~~-~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L 179 (285)
T 1ozn_A 106 RLHTLHLDRCG-LQEL-GPGLFRGLAALQYLYLQDNALQ-AL-PDDTFRDLGNLTHLFLHGNR-ISSVP-ERAFRGLHSL 179 (285)
T ss_dssp TCCEEECTTSC-CCCC-CTTTTTTCTTCCEEECCSSCCC-CC-CTTTTTTCTTCCEEECCSSC-CCEEC-TTTTTTCTTC
T ss_pred CCCEEECCCCc-CCEE-CHhHhhCCcCCCEEECCCCccc-cc-CHhHhccCCCccEEECCCCc-ccccC-HHHhcCcccc
Confidence 77777777642 2221 1223455677777777664322 11 11122345666666666542 22111 1112235566
Q ss_pred cEEEecCCCCCChHHHHHHHHHhcCCCcEEEccCCCCCChHHHHHHHhcCCCCcEEeccCCC
Q 015721 257 ETLIIGGCRDISDESIKHLAASCKSSLKNLRMDWCLNISDSSLSCILSQCRNLEALDIGCCE 318 (402)
Q Consensus 257 ~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~ 318 (402)
+.|+++++. +.......+ .. .++|+.|+++++ .++. .....+..+++|+.|+++++.
T Consensus 180 ~~L~l~~n~-l~~~~~~~~-~~-l~~L~~L~l~~n-~l~~-~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 180 DRLLLHQNR-VAHVHPHAF-RD-LGRLMTLYLFAN-NLSA-LPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp CEEECCSSC-CCEECTTTT-TT-CTTCCEEECCSS-CCSC-CCHHHHTTCTTCCEEECCSSC
T ss_pred CEEECCCCc-ccccCHhHc-cC-cccccEeeCCCC-cCCc-CCHHHcccCcccCEEeccCCC
Confidence 666665542 221100011 11 145555555554 2221 111224455555555555543
No 79
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.23 E-value=5.8e-13 Score=115.60 Aligned_cols=157 Identities=16% Similarity=0.165 Sum_probs=68.7
Q ss_pred CCCcEEecCCCCCCchHHHHHHHhcCCCCCEEccCCCCCCCcccHHHHH--hcCCCCCEEEecCCCCCChHH-HHHHHHh
Q 015721 176 RNLEELGLLGCTSISDSGVIDLVNGCQNIKFLDLNKCSNIGDNGISSVS--KSCSSLKTLKLLDCYKVGDKS-ILSLAKF 252 (402)
Q Consensus 176 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~-~~~~~~~ 252 (402)
++|++|+++++ .+... ....+..+++|++|+++++...+...+.... ..+++|++|+++++....... ...+...
T Consensus 149 ~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~ 226 (312)
T 1wwl_A 149 PGLKVLSIAQA-HSLNF-SCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAA 226 (312)
T ss_dssp TTCCEEEEESC-SCCCC-CTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHT
T ss_pred CCCcEEEeeCC-CCccc-hHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhc
Confidence 55666666553 22221 1123344566666666654322221122111 345566666666543221111 1223344
Q ss_pred CCCCcEEEecCCCCCChHH-HHHHHHHhcCCCcEEEccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhc
Q 015721 253 CKNLETLIIGGCRDISDES-IKHLAASCKSSLKNLRMDWCLNISDSSLSCILSQCRNLEALDIGCCEEVTDAAFQDLGEV 331 (402)
Q Consensus 253 ~~~L~~L~l~~~~~~~~~~-~~~l~~~~~~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 331 (402)
+++|+.|+++++. +.... ...+ .. .++|++|+++++ .++ .++..+. ++|+.|+++++. +++. +. ...
T Consensus 227 l~~L~~L~Ls~N~-l~~~~~~~~~-~~-l~~L~~L~Ls~N-~l~--~ip~~~~--~~L~~L~Ls~N~-l~~~--p~-~~~ 294 (312)
T 1wwl_A 227 RVQLQGLDLSHNS-LRDAAGAPSC-DW-PSQLNSLNLSFT-GLK--QVPKGLP--AKLSVLDLSYNR-LDRN--PS-PDE 294 (312)
T ss_dssp TCCCSEEECTTSC-CCSSCCCSCC-CC-CTTCCEEECTTS-CCS--SCCSSCC--SEEEEEECCSSC-CCSC--CC-TTT
T ss_pred CCCCCEEECCCCc-CCcccchhhh-hh-cCCCCEEECCCC-ccC--hhhhhcc--CCceEEECCCCC-CCCC--hh-Hhh
Confidence 5666666665542 22110 0000 00 156666666665 333 1211111 567777776643 3322 11 233
Q ss_pred cCCCcEEEEeCCCCC
Q 015721 332 ELSLKVLKVNCPKVT 346 (402)
Q Consensus 332 ~~~L~~L~l~~~~~~ 346 (402)
.++|+.|+++.|.++
T Consensus 295 l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 295 LPQVGNLSLKGNPFL 309 (312)
T ss_dssp SCEEEEEECTTCTTT
T ss_pred CCCCCEEeccCCCCC
Confidence 446666666555554
No 80
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.20 E-value=6.9e-10 Score=98.14 Aligned_cols=172 Identities=23% Similarity=0.310 Sum_probs=82.2
Q ss_pred CCCCEEEccCCCCCChhHHHHHHhc----CCCCCeEecCCCCCcChHHHHHHHhcCccCcEEecCCCccCChHHHHHHHH
Q 015721 98 KSLKLLNLQNCKGITDAGIASIGSG----LCSLQSLDLSYCRKLTDKGLSAVAEGCQDLRSLHLAGCKSVTDGTLQALSK 173 (402)
Q Consensus 98 ~~L~~L~l~~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 173 (402)
++|+.|+++++. ++......++.. .++|++|+++++. +++.++..+...+++|++|+++++ .+.+.....+..
T Consensus 72 ~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~ 148 (372)
T 3un9_A 72 SSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRD 148 (372)
T ss_dssp TTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHH
T ss_pred hhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHH
Confidence 456666666644 554444333322 2466666666654 555555555555556666666665 344433333322
Q ss_pred ----hCCCCcEEecCCCCCCchHHHH---HHHhcCCCCCEEccCCCCCCCcccHH---HHHhcCCCCCEEEecCCCCCCh
Q 015721 174 ----NCRNLEELGLLGCTSISDSGVI---DLVNGCQNIKFLDLNKCSNIGDNGIS---SVSKSCSSLKTLKLLDCYKVGD 243 (402)
Q Consensus 174 ----~~~~L~~L~l~~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~ 243 (402)
..++|++|++++| .+++.+.. ..+..+++|++|+++++. +++.+.. ......++|++|++++| .+++
T Consensus 149 ~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~ 225 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYN-GAGD 225 (372)
T ss_dssp HHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSS-CCCH
T ss_pred HHHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCC-CCCH
Confidence 2355666666653 34433322 223445566666665532 3332222 22233445555555553 3343
Q ss_pred HHHHHH---HHhCCCCcEEEecCCCCCChHHHHHHH
Q 015721 244 KSILSL---AKFCKNLETLIIGGCRDISDESIKHLA 276 (402)
Q Consensus 244 ~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~l~ 276 (402)
.+...+ ....++|++|+++++ .+++.+...++
T Consensus 226 ~g~~~l~~~L~~~~~L~~L~Ls~N-~i~~~g~~~L~ 260 (372)
T 3un9_A 226 TAALALARAAREHPSLELLHLYFN-ELSSEGRQVLR 260 (372)
T ss_dssp HHHHHHHHHHHHCSSCCEEECTTS-SCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCEEeccCC-CCCHHHHHHHH
Confidence 332222 223455555555543 34444444443
No 81
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.19 E-value=1e-12 Score=113.99 Aligned_cols=233 Identities=15% Similarity=0.146 Sum_probs=108.9
Q ss_pred CCCEEEccCCCCCChhHHHHHHh--cCCCCCeEecCCCCCcChHHHHHHH-hcCccCcEEecCCCccCChHH-HH-HHHH
Q 015721 99 SLKLLNLQNCKGITDAGIASIGS--GLCSLQSLDLSYCRKLTDKGLSAVA-EGCQDLRSLHLAGCKSVTDGT-LQ-ALSK 173 (402)
Q Consensus 99 ~L~~L~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~-~~-~~~~ 173 (402)
.++.+.+.++. +....+..+.. .+++|++|+++++. +.......+. ..+++|++|+++++....... +. ....
T Consensus 65 ~l~~l~l~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 65 RVRRLTVGAAQ-VPAQLLVGALRVLAYSRLKELTLEDLK-ITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp CCCEEEECSCC-CBHHHHHHHHHHHHHSCCCEEEEESCC-CBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred ceeEEEEeCCc-CCHHHHHHHHHhcccCceeEEEeeCCE-eccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 45666666643 44433333221 23557777776654 2211111111 446667777776653221100 11 1112
Q ss_pred hCCCCcEEecCCCCCCchHHHHHHHhcCCCCCEEccCCCCCCCcccHHH--HHhcCCCCCEEEecCCCCCChHHH-HHHH
Q 015721 174 NCRNLEELGLLGCTSISDSGVIDLVNGCQNIKFLDLNKCSNIGDNGISS--VSKSCSSLKTLKLLDCYKVGDKSI-LSLA 250 (402)
Q Consensus 174 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~-~~~~ 250 (402)
.+++|++|+++++. +... ....+..+++|++|+++++.......+.. ....+++|++|+++++........ ..+.
T Consensus 143 ~~~~L~~L~Ls~n~-l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~ 220 (310)
T 4glp_A 143 LKPGLKVLSIAQAH-SPAF-SCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALA 220 (310)
T ss_dssp BCSCCCEEEEECCS-SCCC-CTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHH
T ss_pred hccCCCEEEeeCCC-cchh-hHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHH
Confidence 46677777776632 2221 11234456677777777654332211111 113456677777776532211111 1233
Q ss_pred HhCCCCcEEEecCCCCCChH---HHHHHHHHhcCCCcEEEccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCChHHHHH
Q 015721 251 KFCKNLETLIIGGCRDISDE---SIKHLAASCKSSLKNLRMDWCLNISDSSLSCILSQCRNLEALDIGCCEEVTDAAFQD 327 (402)
Q Consensus 251 ~~~~~L~~L~l~~~~~~~~~---~~~~l~~~~~~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 327 (402)
..+++|+.|+++++. +... .+..+ . .+++|++|+++++ .++ .++.. -.++|+.|+++++. ++.. +.
T Consensus 221 ~~l~~L~~L~Ls~N~-l~~~~p~~~~~~-~-~~~~L~~L~Ls~N-~l~--~lp~~--~~~~L~~L~Ls~N~-l~~~--~~ 289 (310)
T 4glp_A 221 AAGVQPHSLDLSHNS-LRATVNPSAPRC-M-WSSALNSLNLSFA-GLE--QVPKG--LPAKLRVLDLSSNR-LNRA--PQ 289 (310)
T ss_dssp HHTCCCSSEECTTSC-CCCCCCSCCSSC-C-CCTTCCCEECCSS-CCC--SCCSC--CCSCCSCEECCSCC-CCSC--CC
T ss_pred hcCCCCCEEECCCCC-CCccchhhHHhc-c-CcCcCCEEECCCC-CCC--chhhh--hcCCCCEEECCCCc-CCCC--ch
Confidence 456777777776643 2211 11111 0 0147777777765 333 12211 13677777777643 3321 11
Q ss_pred HHhccCCCcEEEEeCCCCCH
Q 015721 328 LGEVELSLKVLKVNCPKVTV 347 (402)
Q Consensus 328 ~~~~~~~L~~L~l~~~~~~~ 347 (402)
...+++|+.|+++.|.+++
T Consensus 290 -~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 290 -PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp -TTSCCCCSCEECSSTTTSC
T ss_pred -hhhCCCccEEECcCCCCCC
Confidence 2344577777776666553
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.19 E-value=1.2e-12 Score=113.58 Aligned_cols=136 Identities=13% Similarity=0.115 Sum_probs=62.7
Q ss_pred CCCCeEecCCCCCcChHHHHHHHh--cCccCcEEecCCCccCChHHHHHHH-HhCCCCcEEecCCCCCCchHH--H-HHH
Q 015721 124 CSLQSLDLSYCRKLTDKGLSAVAE--GCQDLRSLHLAGCKSVTDGTLQALS-KNCRNLEELGLLGCTSISDSG--V-IDL 197 (402)
Q Consensus 124 ~~L~~L~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~--~-~~~ 197 (402)
..++.+.+.++. ++...+..+.. .+++|++|+++++... ......+. ..+++|++|+++++. ++... + ...
T Consensus 64 ~~l~~l~l~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~~~~~~L~~L~Ls~n~-i~~~~~~~~~~~ 140 (310)
T 4glp_A 64 LRVRRLTVGAAQ-VPAQLLVGALRVLAYSRLKELTLEDLKIT-GTMPPLPLEATGLALSSLRLRNVS-WATGRSWLAELQ 140 (310)
T ss_dssp CCCCEEEECSCC-CBHHHHHHHHHHHHHSCCCEEEEESCCCB-SCCCCCSSSCCCBCCSSCEEESCC-CSSTTSSHHHHH
T ss_pred cceeEEEEeCCc-CCHHHHHHHHHhcccCceeEEEeeCCEec-cchhhhhhhccCCCCCEEEeeccc-ccchhhhhHHHH
Confidence 346677776654 55444433322 2456777777765322 11111111 346677777776632 32210 0 112
Q ss_pred HhcCCCCCEEccCCCCCCCcccHHHHHhcCCCCCEEEecCCCCCChHHHHH--HHHhCCCCcEEEecCC
Q 015721 198 VNGCQNIKFLDLNKCSNIGDNGISSVSKSCSSLKTLKLLDCYKVGDKSILS--LAKFCKNLETLIIGGC 264 (402)
Q Consensus 198 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~ 264 (402)
+..+++|++|+++++..... .+.....+++|++|+++++.......+.. ....+++|++|+++++
T Consensus 141 ~~~~~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N 207 (310)
T 4glp_A 141 QWLKPGLKVLSIAQAHSPAF--SCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT 207 (310)
T ss_dssp TTBCSCCCEEEEECCSSCCC--CTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS
T ss_pred hhhccCCCEEEeeCCCcchh--hHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC
Confidence 23566777777766432111 11222345666666666643222211111 1123455666666554
No 83
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.19 E-value=2.6e-12 Score=110.01 Aligned_cols=180 Identities=18% Similarity=0.141 Sum_probs=87.6
Q ss_pred CCCCCeEecCCCCCcChHHHHHHHhcCccCcEEecCCCccCChHHHHHHHHhCCCCcEEecCCCCCCchHHHHHHHhcCC
Q 015721 123 LCSLQSLDLSYCRKLTDKGLSAVAEGCQDLRSLHLAGCKSVTDGTLQALSKNCRNLEELGLLGCTSISDSGVIDLVNGCQ 202 (402)
Q Consensus 123 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 202 (402)
.++|++|+++++. +.... +..+..+++|++|+++++. +.... +..+..+++|++|+++++..+... ....+..++
T Consensus 31 ~~~l~~L~l~~n~-i~~~~-~~~~~~~~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~~l~~~-~~~~~~~l~ 105 (285)
T 1ozn_A 31 PAASQRIFLHGNR-ISHVP-AASFRACRNLTILWLHSNV-LARID-AAAFTGLALLEQLDLSDNAQLRSV-DPATFHGLG 105 (285)
T ss_dssp CTTCSEEECTTSC-CCEEC-TTTTTTCTTCCEEECCSSC-CCEEC-TTTTTTCTTCCEEECCSCTTCCCC-CTTTTTTCT
T ss_pred CCCceEEEeeCCc-CCccC-HHHcccCCCCCEEECCCCc-cceeC-HhhcCCccCCCEEeCCCCCCcccc-CHHHhcCCc
Confidence 4678888888765 44321 1223567888888887753 22211 122334777888888774323321 122345667
Q ss_pred CCCEEccCCCCCCCcccHHHHHhcCCCCCEEEecCCCCCChHHHHHHHHhCCCCcEEEecCCCCCChHHHHHHHHHhcCC
Q 015721 203 NIKFLDLNKCSNIGDNGISSVSKSCSSLKTLKLLDCYKVGDKSILSLAKFCKNLETLIIGGCRDISDESIKHLAASCKSS 282 (402)
Q Consensus 203 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~ 282 (402)
+|++|+++++..... .+.....+++|++|+++++.. .... ...+..+++|+.|+++++. ++......+ .. .++
T Consensus 106 ~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l-~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~~-~~-l~~ 178 (285)
T 1ozn_A 106 RLHTLHLDRCGLQEL--GPGLFRGLAALQYLYLQDNAL-QALP-DDTFRDLGNLTHLFLHGNR-ISSVPERAF-RG-LHS 178 (285)
T ss_dssp TCCEEECTTSCCCCC--CTTTTTTCTTCCEEECCSSCC-CCCC-TTTTTTCTTCCEEECCSSC-CCEECTTTT-TT-CTT
T ss_pred CCCEEECCCCcCCEE--CHhHhhCCcCCCEEECCCCcc-cccC-HhHhccCCCccEEECCCCc-ccccCHHHh-cC-ccc
Confidence 777777776432221 122233566777777766432 1111 1112335666666665542 221100000 11 155
Q ss_pred CcEEEccCCCCCChHHHHHHHhcCCCCcEEeccC
Q 015721 283 LKNLRMDWCLNISDSSLSCILSQCRNLEALDIGC 316 (402)
Q Consensus 283 L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~ 316 (402)
|++|+++++ .++.. ....+..+++|+.|++++
T Consensus 179 L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~ 210 (285)
T 1ozn_A 179 LDRLLLHQN-RVAHV-HPHAFRDLGRLMTLYLFA 210 (285)
T ss_dssp CCEEECCSS-CCCEE-CTTTTTTCTTCCEEECCS
T ss_pred cCEEECCCC-ccccc-CHhHccCcccccEeeCCC
Confidence 566665554 22211 112234455555555555
No 84
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.18 E-value=3.9e-11 Score=109.38 Aligned_cols=117 Identities=11% Similarity=0.051 Sum_probs=57.8
Q ss_pred CCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCCCCcChHHHHHHHhcCccCcEEecCCCccCChHHHHHHHHhCCC
Q 015721 98 KSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLTDKGLSAVAEGCQDLRSLHLAGCKSVTDGTLQALSKNCRN 177 (402)
Q Consensus 98 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 177 (402)
++|++|+++++. +... +. ...+++|++|+++++. +.. ++ ...++|++|+++++.. .. ++. ...+++
T Consensus 131 ~~L~~L~L~~n~-l~~l--p~-~~~l~~L~~L~l~~N~-l~~--lp---~~~~~L~~L~L~~n~l-~~--l~~-~~~l~~ 196 (454)
T 1jl5_A 131 PLLEYLGVSNNQ-LEKL--PE-LQNSSFLKIIDVDNNS-LKK--LP---DLPPSLEFIAAGNNQL-EE--LPE-LQNLPF 196 (454)
T ss_dssp TTCCEEECCSSC-CSSC--CC-CTTCTTCCEEECCSSC-CSC--CC---CCCTTCCEEECCSSCC-SS--CCC-CTTCTT
T ss_pred CCCCEEECcCCC-CCCC--cc-cCCCCCCCEEECCCCc-Ccc--cC---CCcccccEEECcCCcC-Cc--Ccc-ccCCCC
Confidence 578888887754 3332 22 2456777777777754 332 11 1234677777766532 22 111 234666
Q ss_pred CcEEecCCCCCCchHHHHHHHhcCCCCCEEccCCCCCCCcccHHHHHhcCCCCCEEEecCC
Q 015721 178 LEELGLLGCTSISDSGVIDLVNGCQNIKFLDLNKCSNIGDNGISSVSKSCSSLKTLKLLDC 238 (402)
Q Consensus 178 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 238 (402)
|+.|+++++. +.. ++ ...++|++|+++++... . ++. ...+++|++|+++++
T Consensus 197 L~~L~l~~N~-l~~--l~---~~~~~L~~L~l~~n~l~-~--lp~-~~~l~~L~~L~l~~N 247 (454)
T 1jl5_A 197 LTAIYADNNS-LKK--LP---DLPLSLESIVAGNNILE-E--LPE-LQNLPFLTTIYADNN 247 (454)
T ss_dssp CCEEECCSSC-CSS--CC---CCCTTCCEEECCSSCCS-S--CCC-CTTCTTCCEEECCSS
T ss_pred CCEEECCCCc-CCc--CC---CCcCcccEEECcCCcCC-c--ccc-cCCCCCCCEEECCCC
Confidence 6666666532 221 10 11235666666554222 1 111 224555555555553
No 85
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.15 E-value=3.4e-10 Score=99.28 Aligned_cols=75 Identities=19% Similarity=0.206 Sum_probs=40.3
Q ss_pred cCCCCcEEeccCCCCCChHHHHHHHh--ccCCCcEEEEeCCCCCHHHHHHHH---HhCCCCCEEeccCCCCCCHhHHHhh
Q 015721 305 QCRNLEALDIGCCEEVTDAAFQDLGE--VELSLKVLKVNCPKVTVVGIGNVL---EKCASLEYIDVRSCPHVTQASCEEA 379 (402)
Q Consensus 305 ~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~l~~~~---~~~~~L~~L~l~~c~~~~~~~~~~~ 379 (402)
.+|+|+.|.+.+|. +.+.....+.. .+++|++|++++|.+++.+...+. ..+++|+.|++++| .++++.++.+
T Consensus 250 ~~p~Lr~L~L~~~~-i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n-~i~d~~~~~l 327 (362)
T 2ra8_A 250 RFPNLKWLGIVDAE-EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN-YLSDEMKKEL 327 (362)
T ss_dssp TCTTCCEEEEESCT-THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB-BCCHHHHHHH
T ss_pred CCCCcCEEeCCCCC-CchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC-cCCHHHHHHH
Confidence 35666666666533 33333333332 234666666666666665543332 34566666666655 3666666555
Q ss_pred cc
Q 015721 380 GL 381 (402)
Q Consensus 380 ~~ 381 (402)
+.
T Consensus 328 ~~ 329 (362)
T 2ra8_A 328 QK 329 (362)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 86
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.10 E-value=3.7e-10 Score=102.96 Aligned_cols=244 Identities=15% Similarity=0.083 Sum_probs=127.5
Q ss_pred CCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCCCCcChHHHHHHHhcCccCcEEecCCCccCChHHHHHHHHhCCC
Q 015721 98 KSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLTDKGLSAVAEGCQDLRSLHLAGCKSVTDGTLQALSKNCRN 177 (402)
Q Consensus 98 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 177 (402)
++|+.|+++++. +... ....++|++|+++++. +.. ++. +..+++|++|+++++. +.. ++ ...++
T Consensus 111 ~~L~~L~l~~n~-l~~l-----~~~~~~L~~L~L~~n~-l~~--lp~-~~~l~~L~~L~l~~N~-l~~--lp---~~~~~ 174 (454)
T 1jl5_A 111 QSLKSLLVDNNN-LKAL-----SDLPPLLEYLGVSNNQ-LEK--LPE-LQNSSFLKIIDVDNNS-LKK--LP---DLPPS 174 (454)
T ss_dssp TTCCEEECCSSC-CSCC-----CSCCTTCCEEECCSSC-CSS--CCC-CTTCTTCCEEECCSSC-CSC--CC---CCCTT
T ss_pred CCCcEEECCCCc-cCcc-----cCCCCCCCEEECcCCC-CCC--Ccc-cCCCCCCCEEECCCCc-Ccc--cC---CCccc
Confidence 567777776643 3321 0112578888887764 432 222 4567888888887763 221 11 12457
Q ss_pred CcEEecCCCCCCchHHHHHHHhcCCCCCEEccCCCCCCCcccHHHHHhcCCCCCEEEecCCCCCChHHHHHHHHhCCCCc
Q 015721 178 LEELGLLGCTSISDSGVIDLVNGCQNIKFLDLNKCSNIGDNGISSVSKSCSSLKTLKLLDCYKVGDKSILSLAKFCKNLE 257 (402)
Q Consensus 178 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 257 (402)
|++|+++++ .+.. ++ .+..+++|+.|+++++....- + ...++|++|+++++. +.. ++. ...+++|+
T Consensus 175 L~~L~L~~n-~l~~--l~-~~~~l~~L~~L~l~~N~l~~l---~---~~~~~L~~L~l~~n~-l~~--lp~-~~~l~~L~ 240 (454)
T 1jl5_A 175 LEFIAAGNN-QLEE--LP-ELQNLPFLTAIYADNNSLKKL---P---DLPLSLESIVAGNNI-LEE--LPE-LQNLPFLT 240 (454)
T ss_dssp CCEEECCSS-CCSS--CC-CCTTCTTCCEEECCSSCCSSC---C---CCCTTCCEEECCSSC-CSS--CCC-CTTCTTCC
T ss_pred ccEEECcCC-cCCc--Cc-cccCCCCCCEEECCCCcCCcC---C---CCcCcccEEECcCCc-CCc--ccc-cCCCCCCC
Confidence 888888874 3333 22 256778888888887543221 1 123578888888763 221 222 33578888
Q ss_pred EEEecCCCCCChHHHHHHHHHhcCCCcEEEccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCChH-HH-----------
Q 015721 258 TLIIGGCRDISDESIKHLAASCKSSLKNLRMDWCLNISDSSLSCILSQCRNLEALDIGCCEEVTDA-AF----------- 325 (402)
Q Consensus 258 ~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~-~~----------- 325 (402)
.|+++++. +.. +. ..+++|++|+++++ .++. ++ ...++|+.|+++++. ++.. .+
T Consensus 241 ~L~l~~N~-l~~--l~----~~~~~L~~L~l~~N-~l~~--l~---~~~~~L~~L~ls~N~-l~~l~~~~~~L~~L~l~~ 306 (454)
T 1jl5_A 241 TIYADNNL-LKT--LP----DLPPSLEALNVRDN-YLTD--LP---ELPQSLTFLDVSENI-FSGLSELPPNLYYLNASS 306 (454)
T ss_dssp EEECCSSC-CSS--CC----SCCTTCCEEECCSS-CCSC--CC---CCCTTCCEEECCSSC-CSEESCCCTTCCEEECCS
T ss_pred EEECCCCc-CCc--cc----ccccccCEEECCCC-cccc--cC---cccCcCCEEECcCCc-cCcccCcCCcCCEEECcC
Confidence 88887753 221 00 11267777777765 2321 11 123556666665533 2110 00
Q ss_pred ---HHHHhccCCCcEEEEeCCCCCHHHHHHHHHhCCCCCEEeccCCCCCCHhHHHhhccCCCCcceEecccccc
Q 015721 326 ---QDLGEVELSLKVLKVNCPKVTVVGIGNVLEKCASLEYIDVRSCPHVTQASCEEAGLQFPQCCKVNFAGCLF 396 (402)
Q Consensus 326 ---~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~p~l~~l~~~~~~~ 396 (402)
..+....++|+.|+++.+.++.. . ..+++|+.|++++|. ++ .++. .+++++.+++++|..
T Consensus 307 N~l~~i~~~~~~L~~L~Ls~N~l~~l--p---~~~~~L~~L~L~~N~-l~--~lp~---~l~~L~~L~L~~N~l 369 (454)
T 1jl5_A 307 NEIRSLCDLPPSLEELNVSNNKLIEL--P---ALPPRLERLIASFNH-LA--EVPE---LPQNLKQLHVEYNPL 369 (454)
T ss_dssp SCCSEECCCCTTCCEEECCSSCCSCC--C---CCCTTCCEEECCSSC-CS--CCCC---CCTTCCEEECCSSCC
T ss_pred CcCCcccCCcCcCCEEECCCCccccc--c---ccCCcCCEEECCCCc-cc--cccc---hhhhccEEECCCCCC
Confidence 00011112555555544444431 1 124666666666653 22 1111 356677777776653
No 87
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.07 E-value=3.5e-10 Score=96.79 Aligned_cols=169 Identities=20% Similarity=0.188 Sum_probs=91.6
Q ss_pred cCccCcEEecCCCccCChHHHHHHHHhCCCCcEEecCCCCCCchHHHHHHHhcCCCCCEEccCCCCCCCcccHHHHHhcC
Q 015721 148 GCQDLRSLHLAGCKSVTDGTLQALSKNCRNLEELGLLGCTSISDSGVIDLVNGCQNIKFLDLNKCSNIGDNGISSVSKSC 227 (402)
Q Consensus 148 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 227 (402)
.+++|+.|++.++....- +. ...+++|+.|+++++ .++.. .. +..+++|+.|+++++.. .. ++. ...+
T Consensus 44 ~l~~L~~L~l~~~~i~~~---~~-~~~l~~L~~L~L~~n-~l~~~--~~-l~~l~~L~~L~l~~n~l-~~--~~~-l~~l 111 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV---QG-IQYLPNVTKLFLNGN-KLTDI--KP-LANLKNLGWLFLDENKV-KD--LSS-LKDL 111 (291)
T ss_dssp HHHTCCEEECTTSCCCCC---TT-GGGCTTCCEEECCSS-CCCCC--GG-GTTCTTCCEEECCSSCC-CC--GGG-GTTC
T ss_pred hcCcccEEEccCCCcccC---hh-HhcCCCCCEEEccCC-ccCCC--cc-cccCCCCCEEECCCCcC-CC--Chh-hccC
Confidence 367788888887643221 12 344788888888874 33331 12 66778888888877543 22 222 3456
Q ss_pred CCCCEEEecCCCCCChHHHHHHHHhCCCCcEEEecCCCCCChHHHHHHHHHhcCCCcEEEccCCCCCChHHHHHHHhcCC
Q 015721 228 SSLKTLKLLDCYKVGDKSILSLAKFCKNLETLIIGGCRDISDESIKHLAASCKSSLKNLRMDWCLNISDSSLSCILSQCR 307 (402)
Q Consensus 228 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~l~~~l~~~~ 307 (402)
++|++|+++++. +... . ....+++|+.|+++++.-.....+ .. .++|++|+++++ .+++ +.. +..++
T Consensus 112 ~~L~~L~L~~n~-i~~~--~-~l~~l~~L~~L~l~~n~l~~~~~l----~~-l~~L~~L~L~~N-~l~~--~~~-l~~l~ 178 (291)
T 1h6t_A 112 KKLKSLSLEHNG-ISDI--N-GLVHLPQLESLYLGNNKITDITVL----SR-LTKLDTLSLEDN-QISD--IVP-LAGLT 178 (291)
T ss_dssp TTCCEEECTTSC-CCCC--G-GGGGCTTCCEEECCSSCCCCCGGG----GG-CTTCSEEECCSS-CCCC--CGG-GTTCT
T ss_pred CCCCEEECCCCc-CCCC--h-hhcCCCCCCEEEccCCcCCcchhh----cc-CCCCCEEEccCC-cccc--chh-hcCCC
Confidence 777777777653 2221 1 233467777777766532221111 12 266777777665 3332 112 55667
Q ss_pred CCcEEeccCCCCCChHHHHHHHhccCCCcEEEEeCCCC
Q 015721 308 NLEALDIGCCEEVTDAAFQDLGEVELSLKVLKVNCPKV 345 (402)
Q Consensus 308 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 345 (402)
+|+.|+++++. +++. .. ...+++|+.|++..+.+
T Consensus 179 ~L~~L~L~~N~-i~~l--~~-l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 179 KLQNLYLSKNH-ISDL--RA-LAGLKNLDVLELFSQEC 212 (291)
T ss_dssp TCCEEECCSSC-CCBC--GG-GTTCTTCSEEEEEEEEE
T ss_pred ccCEEECCCCc-CCCC--hh-hccCCCCCEEECcCCcc
Confidence 77777776643 3321 12 22334666666644443
No 88
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=99.02 E-value=2.5e-10 Score=69.53 Aligned_cols=42 Identities=33% Similarity=0.381 Sum_probs=35.3
Q ss_pred ccccccCCHHHHHHHHccCCCcchhhHHHHhhHHHHHhhhhcc
Q 015721 4 LCINEVLRDDELRSILSRLEDDKDKERFGLVCKRWLHLQSTER 46 (402)
Q Consensus 4 ~~~~~~LP~eil~~If~~L~~~~~~~~~~~vcr~W~~~~~~~~ 46 (402)
...+..||+|++.+||+||+ .+|+.++++|||+|+.+.....
T Consensus 6 ~~~~~~LP~eil~~I~~~L~-~~dl~~~~~Vck~w~~~~~~~~ 47 (53)
T 1fs1_A 6 GVSWDSLPDELLLGIFSCLC-LPELLKVSGVCKRWYRLASDES 47 (53)
T ss_dssp ---CCSSCHHHHHHHHTTSC-GGGHHHHHTTCHHHHHHHTCGG
T ss_pred CCCHHHCCHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhCChH
Confidence 34567899999999999999 5999999999999999876543
No 89
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.01 E-value=8.7e-10 Score=94.36 Aligned_cols=167 Identities=17% Similarity=0.112 Sum_probs=113.8
Q ss_pred CCCCcEEecCCCCCCchHHHHHHHhcCCCCCEEccCCCCCCCcccHHHHHhcCCCCCEEEecCCCCCChHHHHHHHHhCC
Q 015721 175 CRNLEELGLLGCTSISDSGVIDLVNGCQNIKFLDLNKCSNIGDNGISSVSKSCSSLKTLKLLDCYKVGDKSILSLAKFCK 254 (402)
Q Consensus 175 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 254 (402)
+++|+.|++.++ .+... . .+..+++|+.|+++++...... . ...+++|+.|+++++. +.. +.. ...++
T Consensus 45 l~~L~~L~l~~~-~i~~~--~-~~~~l~~L~~L~L~~n~l~~~~---~-l~~l~~L~~L~l~~n~-l~~--~~~-l~~l~ 112 (291)
T 1h6t_A 45 LNSIDQIIANNS-DIKSV--Q-GIQYLPNVTKLFLNGNKLTDIK---P-LANLKNLGWLFLDENK-VKD--LSS-LKDLK 112 (291)
T ss_dssp HHTCCEEECTTS-CCCCC--T-TGGGCTTCCEEECCSSCCCCCG---G-GTTCTTCCEEECCSSC-CCC--GGG-GTTCT
T ss_pred cCcccEEEccCC-CcccC--h-hHhcCCCCCEEEccCCccCCCc---c-cccCCCCCEEECCCCc-CCC--Chh-hccCC
Confidence 678999999885 34331 1 2677899999999986543322 2 5578999999999864 332 122 44578
Q ss_pred CCcEEEecCCCCCChHHHHHHHHHhcCCCcEEEccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhccCC
Q 015721 255 NLETLIIGGCRDISDESIKHLAASCKSSLKNLRMDWCLNISDSSLSCILSQCRNLEALDIGCCEEVTDAAFQDLGEVELS 334 (402)
Q Consensus 255 ~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 334 (402)
+|+.|+++++.-.....+. . .++|++|+++++ .++. + ..+..+++|+.|++++|. +++... ...+++
T Consensus 113 ~L~~L~L~~n~i~~~~~l~----~-l~~L~~L~l~~n-~l~~--~-~~l~~l~~L~~L~L~~N~-l~~~~~---l~~l~~ 179 (291)
T 1h6t_A 113 KLKSLSLEHNGISDINGLV----H-LPQLESLYLGNN-KITD--I-TVLSRLTKLDTLSLEDNQ-ISDIVP---LAGLTK 179 (291)
T ss_dssp TCCEEECTTSCCCCCGGGG----G-CTTCCEEECCSS-CCCC--C-GGGGGCTTCSEEECCSSC-CCCCGG---GTTCTT
T ss_pred CCCEEECCCCcCCCChhhc----C-CCCCCEEEccCC-cCCc--c-hhhccCCCCCEEEccCCc-cccchh---hcCCCc
Confidence 9999999886432222222 2 288999999887 4442 2 347788999999999864 433221 344568
Q ss_pred CcEEEEeCCCCCHHHHHHHHHhCCCCCEEeccCCC
Q 015721 335 LKVLKVNCPKVTVVGIGNVLEKCASLEYIDVRSCP 369 (402)
Q Consensus 335 L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~ 369 (402)
|+.|+++.+.++... . +..+++|+.|++++|+
T Consensus 180 L~~L~L~~N~i~~l~--~-l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 180 LQNLYLSKNHISDLR--A-LAGLKNLDVLELFSQE 211 (291)
T ss_dssp CCEEECCSSCCCBCG--G-GTTCTTCSEEEEEEEE
T ss_pred cCEEECCCCcCCCCh--h-hccCCCCCEEECcCCc
Confidence 999999777777642 2 4678899999998864
No 90
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.97 E-value=8e-10 Score=103.96 Aligned_cols=145 Identities=21% Similarity=0.164 Sum_probs=76.2
Q ss_pred cCccCcEEecCCCccCChHHHHHHHHhCCCCcEEecCCCCCCchHHHHHHHhcCCCCCEEccCCCCCCCcccHHHHHhcC
Q 015721 148 GCQDLRSLHLAGCKSVTDGTLQALSKNCRNLEELGLLGCTSISDSGVIDLVNGCQNIKFLDLNKCSNIGDNGISSVSKSC 227 (402)
Q Consensus 148 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 227 (402)
.+++|+.|++.++....- +. ...+++|+.|+++++ .+... .. +..+++|+.|+++++..... + ....+
T Consensus 41 ~L~~L~~L~l~~n~i~~l---~~-l~~l~~L~~L~Ls~N-~l~~~--~~-l~~l~~L~~L~Ls~N~l~~l---~-~l~~l 108 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSV---QG-IQYLPNVTKLFLNGN-KLTDI--KP-LTNLKNLGWLFLDENKIKDL---S-SLKDL 108 (605)
T ss_dssp HHTTCCCCBCTTCCCCCC---TT-GGGCTTCCEEECTTS-CCCCC--GG-GGGCTTCCEEECCSSCCCCC---T-TSTTC
T ss_pred cCCCCCEEECcCCCCCCC---hH-HccCCCCCEEEeeCC-CCCCC--hh-hccCCCCCEEECcCCCCCCC---h-hhccC
Confidence 467788888877643221 12 344788888888774 33331 11 56777888888877543221 1 23356
Q ss_pred CCCCEEEecCCCCCChHHHHHHHHhCCCCcEEEecCCCCCChHHHHHHHHHhcCCCcEEEccCCCCCChHHHHHHHhcCC
Q 015721 228 SSLKTLKLLDCYKVGDKSILSLAKFCKNLETLIIGGCRDISDESIKHLAASCKSSLKNLRMDWCLNISDSSLSCILSQCR 307 (402)
Q Consensus 228 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~l~~~l~~~~ 307 (402)
++|+.|+++++..... . .+..+++|+.|+++++. +... ..+ .. .++|+.|+|+++ .+.. +.. +..++
T Consensus 109 ~~L~~L~Ls~N~l~~l---~-~l~~l~~L~~L~Ls~N~-l~~l--~~l-~~-l~~L~~L~Ls~N-~l~~--~~~-l~~l~ 175 (605)
T 1m9s_A 109 KKLKSLSLEHNGISDI---N-GLVHLPQLESLYLGNNK-ITDI--TVL-SR-LTKLDTLSLEDN-QISD--IVP-LAGLT 175 (605)
T ss_dssp TTCCEEECTTSCCCCC---G-GGGGCTTCSEEECCSSC-CCCC--GGG-GS-CTTCSEEECCSS-CCCC--CGG-GTTCT
T ss_pred CCCCEEEecCCCCCCC---c-cccCCCccCEEECCCCc-cCCc--hhh-cc-cCCCCEEECcCC-cCCC--chh-hccCC
Confidence 6777777776532221 1 12345666666666543 2221 111 11 256666666655 2321 111 45566
Q ss_pred CCcEEeccCC
Q 015721 308 NLEALDIGCC 317 (402)
Q Consensus 308 ~L~~L~l~~~ 317 (402)
+|+.|++++|
T Consensus 176 ~L~~L~Ls~N 185 (605)
T 1m9s_A 176 KLQNLYLSKN 185 (605)
T ss_dssp TCCEEECCSS
T ss_pred CCCEEECcCC
Confidence 6666666654
No 91
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.97 E-value=4.5e-10 Score=90.27 Aligned_cols=11 Identities=18% Similarity=0.196 Sum_probs=5.6
Q ss_pred CCCCcEEecCC
Q 015721 175 CRNLEELGLLG 185 (402)
Q Consensus 175 ~~~L~~L~l~~ 185 (402)
+++|+.|++++
T Consensus 43 l~~L~~L~l~~ 53 (197)
T 4ezg_A 43 MNSLTYITLAN 53 (197)
T ss_dssp HHTCCEEEEES
T ss_pred cCCccEEeccC
Confidence 34455555554
No 92
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.96 E-value=2.8e-11 Score=103.04 Aligned_cols=203 Identities=19% Similarity=0.135 Sum_probs=124.6
Q ss_pred ccCcEEecCCCccCChHHHHHHHHhCCCCcEEecCCCCCCchHHHHHHHhcCCCCCEEccCCCCCCCcccHHHHHhcCCC
Q 015721 150 QDLRSLHLAGCKSVTDGTLQALSKNCRNLEELGLLGCTSISDSGVIDLVNGCQNIKFLDLNKCSNIGDNGISSVSKSCSS 229 (402)
Q Consensus 150 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 229 (402)
++|++|+++++. +.... ...+..+++|++|+++++ .+... ....+..+++|++|+++++. +.... ......+++
T Consensus 28 ~~l~~L~ls~n~-l~~~~-~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~~~l~~ 101 (276)
T 2z62_A 28 FSTKNLDLSFNP-LRHLG-SYSFFSFPELQVLDLSRC-EIQTI-EDGAYQSLSHLSTLILTGNP-IQSLA-LGAFSGLSS 101 (276)
T ss_dssp TTCCEEECTTCC-CCEEC-TTTTTTCTTCSEEECTTC-CCCEE-CTTTTTTCTTCCEEECTTCC-CCEEC-TTTTTTCTT
T ss_pred CCccEEECCCCc-ccccC-HhHhccccCCcEEECCCC-cCCcc-CHHHccCCcCCCEEECCCCc-cCccC-hhhhcCCcc
Confidence 579999999874 33221 113345899999999985 44331 12245678999999999854 33221 223446889
Q ss_pred CCEEEecCCCCCChHHHHHHHHhCCCCcEEEecCCCCCC---hHHHHHHHHHhcCCCcEEEccCCCCCCh---HHHHHHH
Q 015721 230 LKTLKLLDCYKVGDKSILSLAKFCKNLETLIIGGCRDIS---DESIKHLAASCKSSLKNLRMDWCLNISD---SSLSCIL 303 (402)
Q Consensus 230 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~~l~~~~~~~L~~L~l~~~~~~~~---~~l~~~l 303 (402)
|++|+++++....... .....+++|+.|+++++.... +..+..+ ++|++|+++++ .++. ..+.. +
T Consensus 102 L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l-----~~L~~L~Ls~N-~l~~~~~~~~~~-l 172 (276)
T 2z62_A 102 LQKLVAVETNLASLEN--FPIGHLKTLKELNVAHNLIQSFKLPEYFSNL-----TNLEHLDLSSN-KIQSIYCTDLRV-L 172 (276)
T ss_dssp CCEEECTTSCCCCSTT--CCCTTCTTCCEEECCSSCCCCCCCCGGGGGC-----TTCCEEECCSS-CCCEECGGGGHH-H
T ss_pred ccEEECCCCCccccCc--hhcccCCCCCEEECcCCccceecCchhhccC-----CCCCEEECCCC-CCCcCCHHHhhh-h
Confidence 9999998764322111 113457899999998864221 2233332 89999999987 3332 22222 3
Q ss_pred hcCCCCc-EEeccCCCCCChHHHHHHHhccCCCcEEEEeCCCCCHHHHHHHHHhCCCCCEEeccCCCCC
Q 015721 304 SQCRNLE-ALDIGCCEEVTDAAFQDLGEVELSLKVLKVNCPKVTVVGIGNVLEKCASLEYIDVRSCPHV 371 (402)
Q Consensus 304 ~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~ 371 (402)
..++.|. .|+++++. ++.... .... ..+|+.|+++.+.++.... ..+..+++|+.|++++++..
T Consensus 173 ~~L~~l~l~L~ls~n~-l~~~~~-~~~~-~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 173 HQMPLLNLSLDLSLNP-MNFIQP-GAFK-EIRLKELALDTNQLKSVPD-GIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp HTCTTCCEEEECCSSC-CCEECT-TSSC-SCCEEEEECCSSCCSCCCT-TTTTTCCSCCEEECCSSCBC
T ss_pred hhccccceeeecCCCc-ccccCc-cccC-CCcccEEECCCCceeecCH-hHhcccccccEEEccCCccc
Confidence 4455554 88998754 332211 1111 2289999997777775432 23467999999999975543
No 93
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.95 E-value=1.3e-09 Score=102.56 Aligned_cols=168 Identities=17% Similarity=0.114 Sum_probs=116.5
Q ss_pred CCCCcEEecCCCCCCchHHHHHHHhcCCCCCEEccCCCCCCCcccHHHHHhcCCCCCEEEecCCCCCChHHHHHHHHhCC
Q 015721 175 CRNLEELGLLGCTSISDSGVIDLVNGCQNIKFLDLNKCSNIGDNGISSVSKSCSSLKTLKLLDCYKVGDKSILSLAKFCK 254 (402)
Q Consensus 175 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 254 (402)
+++|+.|++.++. +.. +. .+..+++|+.|+++++...... . ...+++|+.|+++++. +.. ++ .+..++
T Consensus 42 L~~L~~L~l~~n~-i~~--l~-~l~~l~~L~~L~Ls~N~l~~~~---~-l~~l~~L~~L~Ls~N~-l~~--l~-~l~~l~ 109 (605)
T 1m9s_A 42 LNSIDQIIANNSD-IKS--VQ-GIQYLPNVTKLFLNGNKLTDIK---P-LTNLKNLGWLFLDENK-IKD--LS-SLKDLK 109 (605)
T ss_dssp HTTCCCCBCTTCC-CCC--CT-TGGGCTTCCEEECTTSCCCCCG---G-GGGCTTCCEEECCSSC-CCC--CT-TSTTCT
T ss_pred CCCCCEEECcCCC-CCC--Ch-HHccCCCCCEEEeeCCCCCCCh---h-hccCCCCCEEECcCCC-CCC--Ch-hhccCC
Confidence 7889999998853 433 12 3677899999999986543322 2 5578999999999864 332 12 234578
Q ss_pred CCcEEEecCCCCCChHHHHHHHHHhcCCCcEEEccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhccCC
Q 015721 255 NLETLIIGGCRDISDESIKHLAASCKSSLKNLRMDWCLNISDSSLSCILSQCRNLEALDIGCCEEVTDAAFQDLGEVELS 334 (402)
Q Consensus 255 ~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 334 (402)
+|+.|+++++.......+ ..+ ++|+.|+++++ .++. + ..+..+++|+.|++++|. +.+... ...+++
T Consensus 110 ~L~~L~Ls~N~l~~l~~l----~~l-~~L~~L~Ls~N-~l~~--l-~~l~~l~~L~~L~Ls~N~-l~~~~~---l~~l~~ 176 (605)
T 1m9s_A 110 KLKSLSLEHNGISDINGL----VHL-PQLESLYLGNN-KITD--I-TVLSRLTKLDTLSLEDNQ-ISDIVP---LAGLTK 176 (605)
T ss_dssp TCCEEECTTSCCCCCGGG----GGC-TTCSEEECCSS-CCCC--C-GGGGSCTTCSEEECCSSC-CCCCGG---GTTCTT
T ss_pred CCCEEEecCCCCCCCccc----cCC-CccCEEECCCC-ccCC--c-hhhcccCCCCEEECcCCc-CCCchh---hccCCC
Confidence 999999988753332222 222 89999999987 4543 2 347789999999999865 433221 345569
Q ss_pred CcEEEEeCCCCCHHHHHHHHHhCCCCCEEeccCCCC
Q 015721 335 LKVLKVNCPKVTVVGIGNVLEKCASLEYIDVRSCPH 370 (402)
Q Consensus 335 L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~ 370 (402)
|+.|+++.+.++.. . .+..+++|+.|++++|+-
T Consensus 177 L~~L~Ls~N~i~~l--~-~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 177 LQNLYLSKNHISDL--R-ALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp CCEEECCSSCCCBC--G-GGTTCTTCSEEECCSEEE
T ss_pred CCEEECcCCCCCCC--h-HHccCCCCCEEEccCCcC
Confidence 99999977787764 2 256789999999998753
No 94
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.93 E-value=1.2e-09 Score=87.70 Aligned_cols=104 Identities=18% Similarity=0.250 Sum_probs=43.6
Q ss_pred CCCCEEccCCCCCCCcccHHHHHhcCCCCCEEEecCCCCCChHHHHHHHHhCCCCcEEEecCCCCCChHHHHHHHHHhcC
Q 015721 202 QNIKFLDLNKCSNIGDNGISSVSKSCSSLKTLKLLDCYKVGDKSILSLAKFCKNLETLIIGGCRDISDESIKHLAASCKS 281 (402)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 281 (402)
++|+.|+++++.. .. ++ ....+++|++|+++++ .+... . ....+++|++|+++++. ++......+ .. .+
T Consensus 44 ~~L~~L~l~~n~i-~~--l~-~l~~l~~L~~L~l~~n-~~~~~--~-~l~~l~~L~~L~l~~n~-l~~~~~~~l-~~-l~ 112 (197)
T 4ezg_A 44 NSLTYITLANINV-TD--LT-GIEYAHNIKDLTINNI-HATNY--N-PISGLSNLERLRIMGKD-VTSDKIPNL-SG-LT 112 (197)
T ss_dssp HTCCEEEEESSCC-SC--CT-TGGGCTTCSEEEEESC-CCSCC--G-GGTTCTTCCEEEEECTT-CBGGGSCCC-TT-CT
T ss_pred CCccEEeccCCCc-cC--hH-HHhcCCCCCEEEccCC-CCCcc--h-hhhcCCCCCEEEeECCc-cCcccChhh-cC-CC
Confidence 5566666665322 22 11 1334556666666654 22211 1 12235555555555532 221111111 11 14
Q ss_pred CCcEEEccCCCCCChHHHHHHHhcCCCCcEEeccCCC
Q 015721 282 SLKNLRMDWCLNISDSSLSCILSQCRNLEALDIGCCE 318 (402)
Q Consensus 282 ~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~ 318 (402)
+|++|+++++ .+++... ..+..+++|+.|++++|.
T Consensus 113 ~L~~L~Ls~n-~i~~~~~-~~l~~l~~L~~L~L~~n~ 147 (197)
T 4ezg_A 113 SLTLLDISHS-AHDDSIL-TKINTLPKVNSIDLSYNG 147 (197)
T ss_dssp TCCEEECCSS-BCBGGGH-HHHTTCSSCCEEECCSCT
T ss_pred CCCEEEecCC-ccCcHhH-HHHhhCCCCCEEEccCCC
Confidence 5555555554 3332111 223455555555555443
No 95
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.93 E-value=1.1e-08 Score=89.61 Aligned_cols=164 Identities=17% Similarity=0.135 Sum_probs=90.5
Q ss_pred HHHhcCCCCCEEccCCCCCCCcccHHHHHhcCCCCCEEEecCCCCCChHHHHHHHH-hCCCCcEEEecCCCCC--ChH--
Q 015721 196 DLVNGCQNIKFLDLNKCSNIGDNGISSVSKSCSSLKTLKLLDCYKVGDKSILSLAK-FCKNLETLIIGGCRDI--SDE-- 270 (402)
Q Consensus 196 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~--~~~-- 270 (402)
.++..+|+|+.|.++++..... +.+ ..++|++|++..+ .+....+..+.. .+|+|+.|+++.+... .+.
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l~l---~~~--~~~~L~~L~L~~~-~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~ 239 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNLSI---GKK--PRPNLKSLEIISG-GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDM 239 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTCBC---CSC--BCTTCSEEEEECS-BCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCG
T ss_pred HHHhcCCCCcEEEEeCCCCcee---ccc--cCCCCcEEEEecC-CCChHHHHHHHHccCCCCcEEEEeccccccccchhH
Confidence 4455566666666655421211 111 2567777777654 355555555442 4677777777421110 111
Q ss_pred -HHHHHH-HHhcCCCcEEEccCCCCCChHHHHHHH--hcCCCCcEEeccCCCCCChHHHHHHHh---ccCCCcEEEEeCC
Q 015721 271 -SIKHLA-ASCKSSLKNLRMDWCLNISDSSLSCIL--SQCRNLEALDIGCCEEVTDAAFQDLGE---VELSLKVLKVNCP 343 (402)
Q Consensus 271 -~~~~l~-~~~~~~L~~L~l~~~~~~~~~~l~~~l--~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~ 343 (402)
.+..+. ...+++|++|.+.+| .+.+.....+. ..+|+|++|+++. +.+++.+...+.. .+++|+.|+++.+
T Consensus 240 ~~l~~~l~~~~~p~Lr~L~L~~~-~i~~~~~~~la~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 240 NVFRPLFSKDRFPNLKWLGIVDA-EEQNVVVEMFLESDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp GGTGGGSCTTTCTTCCEEEEESC-TTHHHHHHHHHHCSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred HHHHHHHhcCCCCCcCEEeCCCC-CCchHHHHHHHhCccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 111111 112378888888776 44443333333 2467888888875 4577766655543 3457888888666
Q ss_pred CCCHHHHHHHHHhCCCCCEEeccCCC
Q 015721 344 KVTVVGIGNVLEKCASLEYIDVRSCP 369 (402)
Q Consensus 344 ~~~~~~l~~~~~~~~~L~~L~l~~c~ 369 (402)
.+++.+...+.+.+ .-.++++..+
T Consensus 318 ~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 318 YLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp BCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred cCCHHHHHHHHHHc--CCEEEecCCc
Confidence 78877776665544 4456776643
No 96
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.92 E-value=8.9e-11 Score=99.93 Aligned_cols=132 Identities=19% Similarity=0.167 Sum_probs=70.4
Q ss_pred CCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCCCCcChHHHHHHHhcCccCcEEecCCCccCChHHHHHHHHhCCC
Q 015721 98 KSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLTDKGLSAVAEGCQDLRSLHLAGCKSVTDGTLQALSKNCRN 177 (402)
Q Consensus 98 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 177 (402)
++|++|+++++. ++......+ ..+++|++|+++++. +.... +..+..+++|++|+++++. +... ....+..+++
T Consensus 28 ~~l~~L~ls~n~-l~~~~~~~~-~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~ 101 (276)
T 2z62_A 28 FSTKNLDLSFNP-LRHLGSYSF-FSFPELQVLDLSRCE-IQTIE-DGAYQSLSHLSTLILTGNP-IQSL-ALGAFSGLSS 101 (276)
T ss_dssp TTCCEEECTTCC-CCEECTTTT-TTCTTCSEEECTTCC-CCEEC-TTTTTTCTTCCEEECTTCC-CCEE-CTTTTTTCTT
T ss_pred CCccEEECCCCc-ccccCHhHh-ccccCCcEEECCCCc-CCccC-HHHccCCcCCCEEECCCCc-cCcc-ChhhhcCCcc
Confidence 468888888754 443322222 457888888888764 43211 1223557788888887763 2221 1122334677
Q ss_pred CcEEecCCCCCCchHHHHHHHhcCCCCCEEccCCCCCCCcccHHHHHhcCCCCCEEEecCC
Q 015721 178 LEELGLLGCTSISDSGVIDLVNGCQNIKFLDLNKCSNIGDNGISSVSKSCSSLKTLKLLDC 238 (402)
Q Consensus 178 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 238 (402)
|++|++.++. +.... ...+..+++|++|+++++. +....++.....+++|++|+++++
T Consensus 102 L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N 159 (276)
T 2z62_A 102 LQKLVAVETN-LASLE-NFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSN 159 (276)
T ss_dssp CCEEECTTSC-CCCST-TCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSS
T ss_pred ccEEECCCCC-ccccC-chhcccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCC
Confidence 7777777642 22210 1124455677777776643 222112233345566666666654
No 97
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.91 E-value=4.6e-10 Score=95.08 Aligned_cols=36 Identities=17% Similarity=0.223 Sum_probs=20.4
Q ss_pred CCCcEEEccCCCCCChHHHHHHHhcCCCCcEEeccCCC
Q 015721 281 SSLKNLRMDWCLNISDSSLSCILSQCRNLEALDIGCCE 318 (402)
Q Consensus 281 ~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~ 318 (402)
++|++|+++++ .++. .....+..+++|+.|+++++.
T Consensus 181 ~~L~~L~L~~N-~l~~-~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 181 TELKTLKLDNN-QLKR-VPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TTCCEEECCSS-CCSC-CCTTTTTTCTTCCEEECCSSC
T ss_pred CCcCEEECCCC-cCCc-CCHHHhccccCCCEEEecCCC
Confidence 56667766665 3321 111234567777888877654
No 98
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.91 E-value=1.2e-10 Score=98.92 Aligned_cols=80 Identities=23% Similarity=0.219 Sum_probs=37.7
Q ss_pred CCCCCeEecCCCCCcChHHHHHHHhcCccCcEEecCCCccCChHHHHHHHHhCCCCcEEecCCCCCCchHHHHHHHhcCC
Q 015721 123 LCSLQSLDLSYCRKLTDKGLSAVAEGCQDLRSLHLAGCKSVTDGTLQALSKNCRNLEELGLLGCTSISDSGVIDLVNGCQ 202 (402)
Q Consensus 123 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 202 (402)
+++|++|++.++. +.. ++. ...+++|++|+++++.. .. +. ....+++|++|+++++ .++.. ....+..++
T Consensus 40 l~~L~~L~l~~~~-i~~--~~~-l~~l~~L~~L~l~~n~l-~~--~~-~l~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~ 109 (272)
T 3rfs_A 40 LNSIDQIIANNSD-IKS--VQG-IQYLPNVRYLALGGNKL-HD--IS-ALKELTNLTYLILTGN-QLQSL-PNGVFDKLT 109 (272)
T ss_dssp HTTCCEEECTTSC-CCC--CTT-GGGCTTCCEEECTTSCC-CC--CG-GGTTCTTCCEEECTTS-CCCCC-CTTTTTTCT
T ss_pred ccceeeeeeCCCC-ccc--ccc-cccCCCCcEEECCCCCC-CC--ch-hhcCCCCCCEEECCCC-ccCcc-ChhHhcCCc
Confidence 4567777776654 322 111 24466666666666532 21 11 1223566666666653 22210 111234455
Q ss_pred CCCEEccCCC
Q 015721 203 NIKFLDLNKC 212 (402)
Q Consensus 203 ~L~~L~l~~~ 212 (402)
+|++|+++++
T Consensus 110 ~L~~L~L~~n 119 (272)
T 3rfs_A 110 NLKELVLVEN 119 (272)
T ss_dssp TCCEEECTTS
T ss_pred CCCEEECCCC
Confidence 5555555553
No 99
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.88 E-value=2.3e-10 Score=97.86 Aligned_cols=197 Identities=15% Similarity=0.082 Sum_probs=105.5
Q ss_pred hcCCCCCeEecCCCCCcChHHHHHHHhcCccCcEEecCCCccCChHHHHHHHHhCCCCcEEecCCCCCCchHHHHHHHhc
Q 015721 121 SGLCSLQSLDLSYCRKLTDKGLSAVAEGCQDLRSLHLAGCKSVTDGTLQALSKNCRNLEELGLLGCTSISDSGVIDLVNG 200 (402)
Q Consensus 121 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 200 (402)
..++++++++++++. ++. ++. .-.++++.|+++++. +.... ...+..+++|+.|+++++ .++.. .. ...
T Consensus 7 ~~l~~l~~l~~~~~~-l~~--ip~--~~~~~l~~L~L~~N~-l~~~~-~~~~~~l~~L~~L~L~~n-~l~~~--~~-~~~ 75 (290)
T 1p9a_G 7 SKVASHLEVNCDKRN-LTA--LPP--DLPKDTTILHLSENL-LYTFS-LATLMPYTRLTQLNLDRA-ELTKL--QV-DGT 75 (290)
T ss_dssp ECSTTCCEEECTTSC-CSS--CCS--CCCTTCCEEECTTSC-CSEEE-GGGGTTCTTCCEEECTTS-CCCEE--EC-CSC
T ss_pred cccCCccEEECCCCC-CCc--CCC--CCCCCCCEEEcCCCc-CCccC-HHHhhcCCCCCEEECCCC-ccCcc--cC-CCC
Confidence 356788999888754 432 111 113678899998864 33211 223345788889988874 34331 11 156
Q ss_pred CCCCCEEccCCCCCCCcccHHHHHhcCCCCCEEEecCCCCCChHHHHHHHHhCCCCcEEEecCCCCCC---hHHHHHHHH
Q 015721 201 CQNIKFLDLNKCSNIGDNGISSVSKSCSSLKTLKLLDCYKVGDKSILSLAKFCKNLETLIIGGCRDIS---DESIKHLAA 277 (402)
Q Consensus 201 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~~l~~ 277 (402)
+++|+.|+++++.. .. ++.....+++|++|+++++. +.... ...+..+++|+.|+++++. +. ...+..
T Consensus 76 l~~L~~L~Ls~N~l-~~--l~~~~~~l~~L~~L~l~~N~-l~~l~-~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~--- 146 (290)
T 1p9a_G 76 LPVLGTLDLSHNQL-QS--LPLLGQTLPALTVLDVSFNR-LTSLP-LGALRGLGELQELYLKGNE-LKTLPPGLLTP--- 146 (290)
T ss_dssp CTTCCEEECCSSCC-SS--CCCCTTTCTTCCEEECCSSC-CCCCC-SSTTTTCTTCCEEECTTSC-CCCCCTTTTTT---
T ss_pred CCcCCEEECCCCcC-Cc--CchhhccCCCCCEEECCCCc-CcccC-HHHHcCCCCCCEEECCCCC-CCccChhhccc---
Confidence 78888888887533 22 22233456778888887753 22111 1123346777788776653 22 111111
Q ss_pred HhcCCCcEEEccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhccCCCcEEEEeCCC
Q 015721 278 SCKSSLKNLRMDWCLNISDSSLSCILSQCRNLEALDIGCCEEVTDAAFQDLGEVELSLKVLKVNCPK 344 (402)
Q Consensus 278 ~~~~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 344 (402)
.++|+.|+++++ .++. .....+..+++|+.|+++++. ++. ++......++|+.|++..|.
T Consensus 147 --l~~L~~L~L~~N-~l~~-l~~~~~~~l~~L~~L~L~~N~-l~~--ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 147 --TPKLEKLSLANN-NLTE-LPAGLLNGLENLDTLLLQENS-LYT--IPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp --CTTCCEEECTTS-CCSC-CCTTTTTTCTTCCEEECCSSC-CCC--CCTTTTTTCCCSEEECCSCC
T ss_pred --ccCCCEEECCCC-cCCc-cCHHHhcCcCCCCEEECCCCc-CCc--cChhhcccccCCeEEeCCCC
Confidence 167777777765 3331 111234566777777777643 321 11111122367777774333
No 100
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.87 E-value=1.5e-07 Score=74.46 Aligned_cols=126 Identities=16% Similarity=0.138 Sum_probs=80.0
Q ss_pred HHHHHHhCCCCcEEEecCCCCCChHHHHHHHHHh--cCCCcEEEccCCCCCChHHHH---HHHhcCCCCcEEeccCCCCC
Q 015721 246 ILSLAKFCKNLETLIIGGCRDISDESIKHLAASC--KSSLKNLRMDWCLNISDSSLS---CILSQCRNLEALDIGCCEEV 320 (402)
Q Consensus 246 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~--~~~L~~L~l~~~~~~~~~~l~---~~l~~~~~L~~L~l~~~~~~ 320 (402)
+.......++|++|+++++..+.+.++..++... .++|++|+++++ .+.+++.. ..+...++|++|++++| .+
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i 105 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESN-FI 105 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSS-CC
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCC-cC
Confidence 3444555667777777665456666666665443 256777777776 56655533 33556677888888773 46
Q ss_pred ChHHHHHHHhc---cCCCcEEEE--eCCCCCHHHH---HHHHHhCCCCCEEeccCCCCCCHh
Q 015721 321 TDAAFQDLGEV---ELSLKVLKV--NCPKVTVVGI---GNVLEKCASLEYIDVRSCPHVTQA 374 (402)
Q Consensus 321 ~~~~~~~~~~~---~~~L~~L~l--~~~~~~~~~l---~~~~~~~~~L~~L~l~~c~~~~~~ 374 (402)
++.+...+... .++|++|++ +++.+++.+. ...+...++|++|++++|. +.++
T Consensus 106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~-i~~~ 166 (185)
T 1io0_A 106 SGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ-QGPR 166 (185)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS-HHHH
T ss_pred CHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC-CChH
Confidence 77766665543 237888888 6777877663 3445567888888887754 4443
No 101
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.86 E-value=1.1e-09 Score=92.79 Aligned_cols=129 Identities=20% Similarity=0.225 Sum_probs=72.4
Q ss_pred hCCCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCCCCcChHHHHHHHhcCccCcEEecCCCccCChHHHHHHHHhC
Q 015721 96 GFKSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLTDKGLSAVAEGCQDLRSLHLAGCKSVTDGTLQALSKNC 175 (402)
Q Consensus 96 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 175 (402)
.+++|+.|.+.++. +... ..+ ..+++|++|+++++. +.. ++ ....+++|++|+++++. +... .......+
T Consensus 39 ~l~~L~~L~l~~~~-i~~~--~~l-~~l~~L~~L~l~~n~-l~~--~~-~l~~l~~L~~L~L~~n~-l~~~-~~~~~~~l 108 (272)
T 3rfs_A 39 ELNSIDQIIANNSD-IKSV--QGI-QYLPNVRYLALGGNK-LHD--IS-ALKELTNLTYLILTGNQ-LQSL-PNGVFDKL 108 (272)
T ss_dssp HHTTCCEEECTTSC-CCCC--TTG-GGCTTCCEEECTTSC-CCC--CG-GGTTCTTCCEEECTTSC-CCCC-CTTTTTTC
T ss_pred cccceeeeeeCCCC-cccc--ccc-ccCCCCcEEECCCCC-CCC--ch-hhcCCCCCCEEECCCCc-cCcc-ChhHhcCC
Confidence 46788888888754 3321 222 467888888888765 433 11 33567888888888763 2221 12223457
Q ss_pred CCCcEEecCCCCCCchHHHHHHHhcCCCCCEEccCCCCCCCcccHHHHHhcCCCCCEEEecCC
Q 015721 176 RNLEELGLLGCTSISDSGVIDLVNGCQNIKFLDLNKCSNIGDNGISSVSKSCSSLKTLKLLDC 238 (402)
Q Consensus 176 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 238 (402)
++|++|+++++ .+... ....+..+++|++|+++++. +... .+.....+++|+.|+++++
T Consensus 109 ~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~l~~n 167 (272)
T 3rfs_A 109 TNLKELVLVEN-QLQSL-PDGVFDKLTNLTYLNLAHNQ-LQSL-PKGVFDKLTNLTELDLSYN 167 (272)
T ss_dssp TTCCEEECTTS-CCCCC-CTTTTTTCTTCCEEECCSSC-CCCC-CTTTTTTCTTCCEEECCSS
T ss_pred cCCCEEECCCC-cCCcc-CHHHhccCCCCCEEECCCCc-cCcc-CHHHhccCccCCEEECCCC
Confidence 88888888874 33321 11234556777777777643 2211 1112234455555655553
No 102
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.86 E-value=2.3e-09 Score=81.81 Aligned_cols=58 Identities=33% Similarity=0.487 Sum_probs=25.1
Q ss_pred CCCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCCCCcChHHHHHHHhcCccCcEEecCCC
Q 015721 97 FKSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLTDKGLSAVAEGCQDLRSLHLAGC 160 (402)
Q Consensus 97 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 160 (402)
+++|+.|+++++. +... .....+++|++|+++++. +... ++.....+++|++|+++++
T Consensus 41 l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls~n~-i~~~-~~~~~~~l~~L~~L~ls~N 98 (149)
T 2je0_A 41 FEELEFLSTINVG-LTSI---ANLPKLNKLKKLELSDNR-VSGG-LEVLAEKCPNLTHLNLSGN 98 (149)
T ss_dssp CTTCCEEECTTSC-CCCC---TTCCCCTTCCEEECCSSC-CCSC-THHHHHHCTTCCEEECTTS
T ss_pred cCCCcEEECcCCC-CCCc---hhhhcCCCCCEEECCCCc-ccch-HHHHhhhCCCCCEEECCCC
Confidence 4555555555532 3222 112334555555555543 2211 2333334455555555544
No 103
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.85 E-value=1.4e-09 Score=92.91 Aligned_cols=57 Identities=21% Similarity=0.222 Sum_probs=28.4
Q ss_pred CCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCCCCcChHHHHHHHhcCccCcEEecCCC
Q 015721 98 KSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLTDKGLSAVAEGCQDLRSLHLAGC 160 (402)
Q Consensus 98 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 160 (402)
++++.|+++++. +.......+ ..+++|++|+++++. +..... . ..+++|++|+++++
T Consensus 31 ~~l~~L~L~~N~-l~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~--~-~~l~~L~~L~Ls~N 87 (290)
T 1p9a_G 31 KDTTILHLSENL-LYTFSLATL-MPYTRLTQLNLDRAE-LTKLQV--D-GTLPVLGTLDLSHN 87 (290)
T ss_dssp TTCCEEECTTSC-CSEEEGGGG-TTCTTCCEEECTTSC-CCEEEC--C-SCCTTCCEEECCSS
T ss_pred CCCCEEEcCCCc-CCccCHHHh-hcCCCCCEEECCCCc-cCcccC--C-CCCCcCCEEECCCC
Confidence 466677776643 333222222 345666666666654 332111 1 34556666666554
No 104
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.81 E-value=1.8e-09 Score=91.37 Aligned_cols=180 Identities=18% Similarity=0.152 Sum_probs=91.7
Q ss_pred CCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCCCCcChHHHHHHHhcCccCcEEecCCCccCChHHHHHHHHhCCC
Q 015721 98 KSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLTDKGLSAVAEGCQDLRSLHLAGCKSVTDGTLQALSKNCRN 177 (402)
Q Consensus 98 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 177 (402)
+++++|+++++. +.......+ ..+++|++|+++++. +... .+..+..+++|++|+++++.. ... ....+..+++
T Consensus 37 ~~l~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~l~~n~-l~~i-~~~~~~~l~~L~~L~l~~n~l-~~~-~~~~~~~l~~ 110 (270)
T 2o6q_A 37 ADTKKLDLQSNK-LSSLPSKAF-HRLTKLRLLYLNDNK-LQTL-PAGIFKELKNLETLWVTDNKL-QAL-PIGVFDQLVN 110 (270)
T ss_dssp TTCSEEECCSSC-CSCCCTTSS-SSCTTCCEEECCSSC-CSCC-CTTTTSSCTTCCEEECCSSCC-CCC-CTTTTTTCSS
T ss_pred CCCCEEECcCCC-CCeeCHHHh-cCCCCCCEEECCCCc-cCee-ChhhhcCCCCCCEEECCCCcC-CcC-CHhHcccccC
Confidence 467777777643 332221122 456777777777654 3321 112234567777777776532 211 1122334677
Q ss_pred CcEEecCCCCCCchHHHHHHHhcCCCCCEEccCCCCCCCcccHHHHHhcCCCCCEEEecCCCCCChHHHHHHHHhCCCCc
Q 015721 178 LEELGLLGCTSISDSGVIDLVNGCQNIKFLDLNKCSNIGDNGISSVSKSCSSLKTLKLLDCYKVGDKSILSLAKFCKNLE 257 (402)
Q Consensus 178 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 257 (402)
|++|+++++ .++.. ....+..+++|++|+++++. +.... ......+++|++|+++++. +.... ...+..+++|+
T Consensus 111 L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~Ls~n~-l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~ 184 (270)
T 2o6q_A 111 LAELRLDRN-QLKSL-PPRVFDSLTKLTYLSLGYNE-LQSLP-KGVFDKLTSLKELRLYNNQ-LKRVP-EGAFDKLTELK 184 (270)
T ss_dssp CCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSSC-CSCCC-TTTTTTCTTCC
T ss_pred CCEEECCCC-ccCee-CHHHhCcCcCCCEEECCCCc-CCccC-HhHccCCcccceeEecCCc-CcEeC-hhHhccCCCcC
Confidence 777777763 23221 11234566778888877753 22211 1223456778888887653 22111 11233467788
Q ss_pred EEEecCCCCCChHHHHHHHHHhcCCCcEEEccCCC
Q 015721 258 TLIIGGCRDISDESIKHLAASCKSSLKNLRMDWCL 292 (402)
Q Consensus 258 ~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~ 292 (402)
.|+++++. ++......+ .. .++|+.|++++++
T Consensus 185 ~L~L~~N~-l~~~~~~~~-~~-l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 185 TLKLDNNQ-LKRVPEGAF-DS-LEKLKMLQLQENP 216 (270)
T ss_dssp EEECCSSC-CSCCCTTTT-TT-CTTCCEEECCSSC
T ss_pred EEECCCCc-CCcCCHHHh-cc-ccCCCEEEecCCC
Confidence 88887653 221111111 11 2678888887653
No 105
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.81 E-value=1.9e-08 Score=76.73 Aligned_cols=132 Identities=27% Similarity=0.324 Sum_probs=92.0
Q ss_pred CCCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCCCCcChHHHHHHHhcCccCcEEecCCCccCChHHHHHHHHhCC
Q 015721 97 FKSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLTDKGLSAVAEGCQDLRSLHLAGCKSVTDGTLQALSKNCR 176 (402)
Q Consensus 97 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 176 (402)
.++|+.|+++++. +.+..++.....+++|++|+++++. +... .....+++|+.|+++++.... . ++.....++
T Consensus 16 ~~~l~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls~n~i~~-~-~~~~~~~l~ 88 (149)
T 2je0_A 16 PSDVKELVLDNSR-SNEGKLEGLTDEFEELEFLSTINVG-LTSI---ANLPKLNKLKKLELSDNRVSG-G-LEVLAEKCP 88 (149)
T ss_dssp GGGCSEEECTTCB-CBTTBCCSCCTTCTTCCEEECTTSC-CCCC---TTCCCCTTCCEEECCSSCCCS-C-THHHHHHCT
T ss_pred CccCeEEEccCCc-CChhHHHHHHhhcCCCcEEECcCCC-CCCc---hhhhcCCCCCEEECCCCcccc-h-HHHHhhhCC
Confidence 4678888888864 4422223333578999999999875 5442 334678999999999975332 1 455566699
Q ss_pred CCcEEecCCCCCCchHHHHHHHhcCCCCCEEccCCCCCCCcccH-HHHHhcCCCCCEEEec
Q 015721 177 NLEELGLLGCTSISDSGVIDLVNGCQNIKFLDLNKCSNIGDNGI-SSVSKSCSSLKTLKLL 236 (402)
Q Consensus 177 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~L~~L~l~ 236 (402)
+|+.|+++++ .++.......+..+++|++|+++++........ ......+++|+.|+++
T Consensus 89 ~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 89 NLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 9999999984 566544445678899999999998643322221 2456678999999875
No 106
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.73 E-value=9.9e-11 Score=97.34 Aligned_cols=13 Identities=0% Similarity=-0.128 Sum_probs=6.7
Q ss_pred CCCcceEeccccc
Q 015721 383 FPQCCKVNFAGCL 395 (402)
Q Consensus 383 ~p~l~~l~~~~~~ 395 (402)
+++++.+.+.+++
T Consensus 225 ~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 225 LEHLKELIARNTW 237 (239)
T ss_dssp CTTCSEEECTTC-
T ss_pred hccCceeeccCcc
Confidence 5555555555554
No 107
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.71 E-value=2.4e-09 Score=83.62 Aligned_cols=11 Identities=45% Similarity=0.733 Sum_probs=5.0
Q ss_pred CCCCCEEEccC
Q 015721 97 FKSLKLLNLQN 107 (402)
Q Consensus 97 ~~~L~~L~l~~ 107 (402)
+++|+.|++++
T Consensus 48 l~~L~~L~l~~ 58 (168)
T 2ell_A 48 FVNLEFLSLIN 58 (168)
T ss_dssp GGGCCEEEEES
T ss_pred CCCCCEEeCcC
Confidence 34444444444
No 108
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.65 E-value=5.4e-09 Score=81.55 Aligned_cols=11 Identities=36% Similarity=0.739 Sum_probs=5.6
Q ss_pred CCCCEEEccCC
Q 015721 98 KSLKLLNLQNC 108 (402)
Q Consensus 98 ~~L~~L~l~~~ 108 (402)
++|++|+++++
T Consensus 24 ~~L~~L~l~~n 34 (168)
T 2ell_A 24 AAVRELVLDNC 34 (168)
T ss_dssp TSCSEEECCSC
T ss_pred ccCCEEECCCC
Confidence 44555555543
No 109
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.65 E-value=1.5e-08 Score=84.71 Aligned_cols=155 Identities=20% Similarity=0.188 Sum_probs=73.9
Q ss_pred CCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCCCCcChHHHHHHHhcCccCcEEecCCCccCChHHHHHHHHhCCC
Q 015721 98 KSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLTDKGLSAVAEGCQDLRSLHLAGCKSVTDGTLQALSKNCRN 177 (402)
Q Consensus 98 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 177 (402)
++++.|+++++. +.......+ ..+++|++|+++++. +... .+..+..+++|++|+++++.. ... ....+..+++
T Consensus 35 ~~l~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~L~~n~l-~~~-~~~~~~~l~~ 108 (251)
T 3m19_A 35 ADTEKLDLQSTG-LATLSDATF-RGLTKLTWLNLDYNQ-LQTL-SAGVFDDLTELGTLGLANNQL-ASL-PLGVFDHLTQ 108 (251)
T ss_dssp TTCCEEECTTSC-CCCCCTTTT-TTCTTCCEEECTTSC-CCCC-CTTTTTTCTTCCEEECTTSCC-CCC-CTTTTTTCTT
T ss_pred CCCCEEEccCCC-cCccCHhHh-cCcccCCEEECCCCc-CCcc-CHhHhccCCcCCEEECCCCcc-ccc-ChhHhcccCC
Confidence 467777777643 333222222 456777777777654 3321 112234567777777776532 211 1122234666
Q ss_pred CcEEecCCCCCCchHHHHHHHhcCCCCCEEccCCCCCCCcccHHHHHhcCCCCCEEEecCCCCCChHHHHHHHHhCCCCc
Q 015721 178 LEELGLLGCTSISDSGVIDLVNGCQNIKFLDLNKCSNIGDNGISSVSKSCSSLKTLKLLDCYKVGDKSILSLAKFCKNLE 257 (402)
Q Consensus 178 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 257 (402)
|++|+++++ .++.. ....+..+++|++|+++++. +.... ......+++|++|+++++.. .... ...+..+++|+
T Consensus 109 L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~~-~~~~~~l~~L~~L~L~~N~l-~~~~-~~~~~~l~~L~ 182 (251)
T 3m19_A 109 LDKLYLGGN-QLKSL-PSGVFDRLTKLKELRLNTNQ-LQSIP-AGAFDKLTNLQTLSLSTNQL-QSVP-HGAFDRLGKLQ 182 (251)
T ss_dssp CCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSSCC-SCCC-TTTTTTCTTCC
T ss_pred CCEEEcCCC-cCCCc-ChhHhccCCcccEEECcCCc-CCccC-HHHcCcCcCCCEEECCCCcC-CccC-HHHHhCCCCCC
Confidence 777777663 33321 11223455666777666642 22211 11223455666666665422 1110 11222345566
Q ss_pred EEEecCC
Q 015721 258 TLIIGGC 264 (402)
Q Consensus 258 ~L~l~~~ 264 (402)
.|+++++
T Consensus 183 ~L~l~~N 189 (251)
T 3m19_A 183 TITLFGN 189 (251)
T ss_dssp EEECCSC
T ss_pred EEEeeCC
Confidence 6666554
No 110
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.64 E-value=2.2e-10 Score=95.22 Aligned_cols=199 Identities=12% Similarity=0.052 Sum_probs=122.1
Q ss_pred ccCcEEecCCCccCChHHHHHHHHhCCCCcEEecCCCCCCchHHHHHHHhcCCCCCEEccCCCCCCCcccHHHHHhcCCC
Q 015721 150 QDLRSLHLAGCKSVTDGTLQALSKNCRNLEELGLLGCTSISDSGVIDLVNGCQNIKFLDLNKCSNIGDNGISSVSKSCSS 229 (402)
Q Consensus 150 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 229 (402)
++|++|+++++. +... ....+..+++|+.|+++++..++... ...+..+++|++|++++++.+.... ...+..+++
T Consensus 31 ~~l~~L~l~~n~-l~~i-~~~~~~~l~~L~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~l~~~n~l~~i~-~~~f~~l~~ 106 (239)
T 2xwt_C 31 PSTQTLKLIETH-LRTI-PSHAFSNLPNISRIYVSIDVTLQQLE-SHSFYNLSKVTHIEIRNTRNLTYID-PDALKELPL 106 (239)
T ss_dssp TTCCEEEEESCC-CSEE-CTTTTTTCTTCCEEEEECCSSCCEEC-TTTEESCTTCCEEEEEEETTCCEEC-TTSEECCTT
T ss_pred CcccEEEEeCCc-ceEE-CHHHccCCCCCcEEeCCCCCCcceeC-HhHcCCCcCCcEEECCCCCCeeEcC-HHHhCCCCC
Confidence 479999998864 3321 11234458999999999854243311 1245678999999998744444321 123346789
Q ss_pred CCEEEecCCCCCChHHHHHHHHhCCCCc---EEEecCCCCCCh---HHHHHHHHHhcCCCc-EEEccCCCCCChHHHH-H
Q 015721 230 LKTLKLLDCYKVGDKSILSLAKFCKNLE---TLIIGGCRDISD---ESIKHLAASCKSSLK-NLRMDWCLNISDSSLS-C 301 (402)
Q Consensus 230 L~~L~l~~~~~~~~~~~~~~~~~~~~L~---~L~l~~~~~~~~---~~~~~l~~~~~~~L~-~L~l~~~~~~~~~~l~-~ 301 (402)
|++|+++++.. .. ++. +..+++|+ .|+++++..+.. ..+..+ ++|+ +|+++++ .++ .+. .
T Consensus 107 L~~L~l~~n~l-~~--lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l-----~~L~~~L~l~~n-~l~--~i~~~ 174 (239)
T 2xwt_C 107 LKFLGIFNTGL-KM--FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGL-----CNETLTLKLYNN-GFT--SVQGY 174 (239)
T ss_dssp CCEEEEEEECC-CS--CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTT-----BSSEEEEECCSC-CCC--EECTT
T ss_pred CCEEeCCCCCC-cc--ccc-cccccccccccEEECCCCcchhhcCcccccch-----hcceeEEEcCCC-CCc--ccCHh
Confidence 99999987542 22 122 33467777 999988633332 222222 7899 9999876 333 111 1
Q ss_pred HHhcCCCCcEEeccCCCCCChHHHHHHHhcc-CCCcEEEEeCCCCCHHHHHHHHHhCCCCCEEeccCCCC
Q 015721 302 ILSQCRNLEALDIGCCEEVTDAAFQDLGEVE-LSLKVLKVNCPKVTVVGIGNVLEKCASLEYIDVRSCPH 370 (402)
Q Consensus 302 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~ 370 (402)
.+.. ++|+.|+++++..++......+ ... ++|+.|+++.+.++..... .+++|+.|.+.++..
T Consensus 175 ~~~~-~~L~~L~L~~n~~l~~i~~~~~-~~l~~~L~~L~l~~N~l~~l~~~----~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 175 AFNG-TKLDAVYLNKNKYLTVIDKDAF-GGVYSGPSLLDVSQTSVTALPSK----GLEHLKELIARNTWT 238 (239)
T ss_dssp TTTT-CEEEEEECTTCTTCCEECTTTT-TTCSBCCSEEECTTCCCCCCCCT----TCTTCSEEECTTC--
T ss_pred hcCC-CCCCEEEcCCCCCcccCCHHHh-hccccCCcEEECCCCccccCChh----HhccCceeeccCccC
Confidence 2333 7899999998643543222222 233 5899999977777653221 588999999988653
No 111
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.61 E-value=1.5e-08 Score=84.79 Aligned_cols=157 Identities=18% Similarity=0.193 Sum_probs=103.8
Q ss_pred CcceEEeccCCcCCCCCCCCChhhHHHHHhhCCCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCCCCcChHHHHHH
Q 015721 66 SRLVELDLSQSVSRSFYPGVTDSDLAVIADGFKSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLTDKGLSAV 145 (402)
Q Consensus 66 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 145 (402)
++++.|+++++.... +....+ ..+++|++|+++++. +....... ...+++|++|+++++. +... .+..
T Consensus 35 ~~l~~L~L~~n~l~~----~~~~~~----~~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~L~~n~-l~~~-~~~~ 102 (251)
T 3m19_A 35 ADTEKLDLQSTGLAT----LSDATF----RGLTKLTWLNLDYNQ-LQTLSAGV-FDDLTELGTLGLANNQ-LASL-PLGV 102 (251)
T ss_dssp TTCCEEECTTSCCCC----CCTTTT----TTCTTCCEEECTTSC-CCCCCTTT-TTTCTTCCEEECTTSC-CCCC-CTTT
T ss_pred CCCCEEEccCCCcCc----cCHhHh----cCcccCCEEECCCCc-CCccCHhH-hccCCcCCEEECCCCc-cccc-ChhH
Confidence 578999999876432 222222 468999999999854 44432222 2568999999999875 4431 1233
Q ss_pred HhcCccCcEEecCCCccCChHHHHHHHHhCCCCcEEecCCCCCCchHHHHHHHhcCCCCCEEccCCCCCCCcccHHHHHh
Q 015721 146 AEGCQDLRSLHLAGCKSVTDGTLQALSKNCRNLEELGLLGCTSISDSGVIDLVNGCQNIKFLDLNKCSNIGDNGISSVSK 225 (402)
Q Consensus 146 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 225 (402)
+..+++|++|+++++. +.. .....+..+++|+.|+++++ .++.. ....+..+++|++|+++++... .. .+....
T Consensus 103 ~~~l~~L~~L~L~~N~-l~~-~~~~~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~L~~N~l~-~~-~~~~~~ 176 (251)
T 3m19_A 103 FDHLTQLDKLYLGGNQ-LKS-LPSGVFDRLTKLKELRLNTN-QLQSI-PAGAFDKLTNLQTLSLSTNQLQ-SV-PHGAFD 176 (251)
T ss_dssp TTTCTTCCEEECCSSC-CCC-CCTTTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSCCS-CC-CTTTTT
T ss_pred hcccCCCCEEEcCCCc-CCC-cChhHhccCCcccEEECcCC-cCCcc-CHHHcCcCcCCCEEECCCCcCC-cc-CHHHHh
Confidence 4678999999999874 332 12223345899999999985 44431 1124667899999999986433 21 122344
Q ss_pred cCCCCCEEEecCCCC
Q 015721 226 SCSSLKTLKLLDCYK 240 (402)
Q Consensus 226 ~~~~L~~L~l~~~~~ 240 (402)
.+++|+.|+++++..
T Consensus 177 ~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 177 RLGKLQTITLFGNQF 191 (251)
T ss_dssp TCTTCCEEECCSCCB
T ss_pred CCCCCCEEEeeCCce
Confidence 678999999998654
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.61 E-value=2.7e-08 Score=83.64 Aligned_cols=32 Identities=19% Similarity=0.265 Sum_probs=15.4
Q ss_pred CCCcEEEccCCCCCChHHHHHHHhcCCCCcEEeccC
Q 015721 281 SSLKNLRMDWCLNISDSSLSCILSQCRNLEALDIGC 316 (402)
Q Consensus 281 ~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~ 316 (402)
++|++|+++++ .+++. ..+..+++|+.|++++
T Consensus 150 ~~L~~L~L~~N-~i~~~---~~l~~l~~L~~L~l~~ 181 (263)
T 1xeu_A 150 SKLEVLDLHGN-EITNT---GGLTRLKKVNWIDLTG 181 (263)
T ss_dssp TTCCEEECTTS-CCCBC---TTSTTCCCCCEEEEEE
T ss_pred CCCCEEECCCC-cCcch---HHhccCCCCCEEeCCC
Confidence 45555555554 23221 2244555555555554
No 113
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.58 E-value=1.3e-09 Score=104.28 Aligned_cols=276 Identities=16% Similarity=0.109 Sum_probs=152.5
Q ss_pred HhcCcceEEeccCCcCCCCCCCCChhhHHHHHhhCCCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCCCCcChHHH
Q 015721 63 ARFSRLVELDLSQSVSRSFYPGVTDSDLAVIADGFKSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLTDKGL 142 (402)
Q Consensus 63 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 142 (402)
....+++.+.+..... ....+ .....+++.|++.++. +.... ...++.|+.+.+..+.......
T Consensus 303 ~~~~~l~~l~~~~~~~----~~~~~------~~~~~~L~~L~l~~~~-~~~~~----~~~l~~L~~l~l~~n~~~~~~~- 366 (635)
T 4g8a_A 303 NCLTNVSSFSLVSVTI----ERVKD------FSYNFGWQHLELVNCK-FGQFP----TLKLKSLKRLTFTSNKGGNAFS- 366 (635)
T ss_dssp GGGTTCSEEEEESCEE----EECGG------GGSCCCCSEEEEESCE-ESSCC----CCBCTTCCEEEEESCCSCCBCC-
T ss_pred hhhccccccccccccc----ccccc------cccchhhhhhhccccc-ccCcC----cccchhhhhcccccccCCCCcc-
Confidence 3455677777665431 11111 1245688888888754 22111 1245778888876643211110
Q ss_pred HHHHhcCccCcEEecCCCccCChHHHHHHHHhCCCCcEEecCCCCCCchHHHHHHHhcCCCCCEEccCCCCCCCcccHHH
Q 015721 143 SAVAEGCQDLRSLHLAGCKSVTDGTLQALSKNCRNLEELGLLGCTSISDSGVIDLVNGCQNIKFLDLNKCSNIGDNGISS 222 (402)
Q Consensus 143 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 222 (402)
...+++|+.++++++..............+.+|+.+++..+.... ....+..+++|+.+.+..+....... ..
T Consensus 367 ---~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~---~~~~~~~l~~L~~l~l~~~~~~~~~~-~~ 439 (635)
T 4g8a_A 367 ---EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT---MSSNFLGLEQLEHLDFQHSNLKQMSE-FS 439 (635)
T ss_dssp ---CCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE---ECSCCTTCTTCCEEECTTSEEESTTS-SC
T ss_pred ---cccccccccchhhccccccccccccchhhhhhhhhhhcccccccc---ccccccccccccchhhhhcccccccc-cc
Confidence 124788888888775432222222233347788888887643211 11224456888888887643322211 11
Q ss_pred HHhcCCCCCEEEecCCCCCChHHHHHHHHhCCCCcEEEecCCCCCC---hHHHHHHHHHhcCCCcEEEccCCCCCChHHH
Q 015721 223 VSKSCSSLKTLKLLDCYKVGDKSILSLAKFCKNLETLIIGGCRDIS---DESIKHLAASCKSSLKNLRMDWCLNISDSSL 299 (402)
Q Consensus 223 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~l 299 (402)
....+++++.++++.+..... .......++.|+.|+++++.... +..+..+ ++|+.|+++++ .++. ..
T Consensus 440 ~~~~l~~l~~l~ls~n~l~~~--~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l-----~~L~~L~Ls~N-~L~~-l~ 510 (635)
T 4g8a_A 440 VFLSLRNLIYLDISHTHTRVA--FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL-----RNLTFLDLSQC-QLEQ-LS 510 (635)
T ss_dssp TTTTCTTCCEEECTTSCCEEC--CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC-----TTCCEEECTTS-CCCE-EC
T ss_pred ccccccccccccccccccccc--cccccccchhhhhhhhhhcccccccCchhhhhc-----cccCEEECCCC-ccCC-cC
Confidence 223567788888876432111 12233446788888887753221 1122222 78888988887 4442 11
Q ss_pred HHHHhcCCCCcEEeccCCCCCChHHHHHHHhccCCCcEEEEeCCCCCHHHHHHHHHhC-CCCCEEeccCCCCCCH
Q 015721 300 SCILSQCRNLEALDIGCCEEVTDAAFQDLGEVELSLKVLKVNCPKVTVVGIGNVLEKC-ASLEYIDVRSCPHVTQ 373 (402)
Q Consensus 300 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~-~~L~~L~l~~c~~~~~ 373 (402)
+..+..+++|+.|+++++. ++..... ....+++|+.|+++.|.++......+ ..+ ++|+.|+++++|...+
T Consensus 511 ~~~f~~l~~L~~L~Ls~N~-l~~l~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~l-~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 511 PTAFNSLSSLQVLNMSHNN-FFSLDTF-PYKCLNSLQVLDYSLNHIMTSKKQEL-QHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp TTTTTTCTTCCEEECTTSC-CCBCCCG-GGTTCTTCCEEECTTSCCCBCCSSCT-TCCCTTCCEEECTTCCBCCS
T ss_pred hHHHcCCCCCCEEECCCCc-CCCCChh-HHhCCCCCCEEECCCCcCCCCCHHHH-HhhhCcCCEEEeeCCCCccc
Confidence 2346788889999998753 3322111 12334588999997777765432222 344 5799999988777654
No 114
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.57 E-value=1.7e-06 Score=68.27 Aligned_cols=124 Identities=16% Similarity=0.154 Sum_probs=92.5
Q ss_pred HHHHHHHHhcCCCcEEEccCCCCCChHHHH---HHHhcCCCCcEEeccCCCCCChHHHHHHHhc---cCCCcEEEEeCCC
Q 015721 271 SIKHLAASCKSSLKNLRMDWCLNISDSSLS---CILSQCRNLEALDIGCCEEVTDAAFQDLGEV---ELSLKVLKVNCPK 344 (402)
Q Consensus 271 ~~~~l~~~~~~~L~~L~l~~~~~~~~~~l~---~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~---~~~L~~L~l~~~~ 344 (402)
.+....... ++|++|+++++..+.+.+.. ..+...++|++|++++| .+++.+...+... .++|++|+++.+.
T Consensus 27 ~l~~~l~~~-~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 27 TLKRIQNND-PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp HHHHHHTTC-TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred HHHHHHhcC-CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 344444444 88999999987577776654 44567899999999985 4888877666543 3589999999999
Q ss_pred CCHHHHHHHH---HhCCCCCEEecc-CCCCCCHhHHHhhcc---CCCCcceEecccccc
Q 015721 345 VTVVGIGNVL---EKCASLEYIDVR-SCPHVTQASCEEAGL---QFPQCCKVNFAGCLF 396 (402)
Q Consensus 345 ~~~~~l~~~~---~~~~~L~~L~l~-~c~~~~~~~~~~~~~---~~p~l~~l~~~~~~~ 396 (402)
+++.+...+. ...++|++|+++ .+..+++++...++. ..+.++.+++++|..
T Consensus 105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 105 ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 9998866554 467799999994 246688888655543 357899999998864
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.53 E-value=6.2e-08 Score=81.44 Aligned_cols=127 Identities=17% Similarity=0.117 Sum_probs=63.1
Q ss_pred HhcCCCCCEEccCCCCCCCcccHHHHHhcCCCCCEEEecCCCCCChHHHHHHHHhCCCCcEEEecCCCCCChHHHHHHHH
Q 015721 198 VNGCQNIKFLDLNKCSNIGDNGISSVSKSCSSLKTLKLLDCYKVGDKSILSLAKFCKNLETLIIGGCRDISDESIKHLAA 277 (402)
Q Consensus 198 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 277 (402)
+..+++|+.|+++++.. ... +. ...+++|+.|+++++..... +.+. . ++|+.|+++++.-.....+.
T Consensus 59 l~~l~~L~~L~L~~N~i-~~~--~~-l~~l~~L~~L~L~~N~l~~l---~~~~-~-~~L~~L~L~~N~l~~~~~l~---- 125 (263)
T 1xeu_A 59 MQFFTNLKELHLSHNQI-SDL--SP-LKDLTKLEELSVNRNRLKNL---NGIP-S-ACLSRLFLDNNELRDTDSLI---- 125 (263)
T ss_dssp GGGCTTCCEEECCSSCC-CCC--GG-GTTCSSCCEEECCSSCCSCC---TTCC-C-SSCCEEECCSSCCSBSGGGT----
T ss_pred HhhCCCCCEEECCCCcc-CCC--hh-hccCCCCCEEECCCCccCCc---Cccc-c-CcccEEEccCCccCCChhhc----
Confidence 34445555555555322 211 11 33455556666555421110 1111 1 56666666664321111111
Q ss_pred HhcCCCcEEEccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhccCCCcEEEEeCCCCC
Q 015721 278 SCKSSLKNLRMDWCLNISDSSLSCILSQCRNLEALDIGCCEEVTDAAFQDLGEVELSLKVLKVNCPKVT 346 (402)
Q Consensus 278 ~~~~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 346 (402)
. .++|+.|+++++ .+++ +. .+..+++|+.|+++++. +++. . ....+++|+.|++..+.++
T Consensus 126 ~-l~~L~~L~Ls~N-~i~~--~~-~l~~l~~L~~L~L~~N~-i~~~--~-~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 126 H-LKNLEILSIRNN-KLKS--IV-MLGFLSKLEVLDLHGNE-ITNT--G-GLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp T-CTTCCEEECTTS-CCCB--CG-GGGGCTTCCEEECTTSC-CCBC--T-TSTTCCCCCEEEEEEEEEE
T ss_pred C-cccccEEECCCC-cCCC--Ch-HHccCCCCCEEECCCCc-Ccch--H-HhccCCCCCEEeCCCCccc
Confidence 1 267788887776 3442 22 36678888888888754 4332 2 2233457888888444443
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.51 E-value=4.8e-09 Score=98.01 Aligned_cols=36 Identities=25% Similarity=0.221 Sum_probs=25.3
Q ss_pred cCCCCCeEecCCCCCcChHHHHHHHhcCccCcEEecCCC
Q 015721 122 GLCSLQSLDLSYCRKLTDKGLSAVAEGCQDLRSLHLAGC 160 (402)
Q Consensus 122 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 160 (402)
.+++|+.|+++++. +. .+|..++.+++|++|++.++
T Consensus 347 ~~~~L~~L~Ls~n~-L~--~Lp~~i~~l~~L~~L~l~~n 382 (567)
T 1dce_A 347 TDEQLFRCELSVEK-ST--VLQSELESCKELQELEPENK 382 (567)
T ss_dssp TTTTSSSCCCCHHH-HH--HHHHHHHHHHHHHHHCTTCH
T ss_pred cCccceeccCChhh-HH--hhHHHHHHHHHHHHhccccc
Confidence 35778888887654 43 46666777888888888653
No 117
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.38 E-value=5.4e-07 Score=83.93 Aligned_cols=133 Identities=17% Similarity=0.149 Sum_probs=75.0
Q ss_pred cCcceEEeccCCcCCCCCCCCChhhHHHHHhhCCCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCCCCcChHHHHH
Q 015721 65 FSRLVELDLSQSVSRSFYPGVTDSDLAVIADGFKSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLTDKGLSA 144 (402)
Q Consensus 65 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 144 (402)
+.+++.|+++++.... +... .+++|+.|+++++. ++.. + ..+++|++|+++++. ++. ++.
T Consensus 58 ~~~L~~L~Ls~n~L~~----lp~~-------l~~~L~~L~Ls~N~-l~~i--p---~~l~~L~~L~Ls~N~-l~~--ip~ 117 (571)
T 3cvr_A 58 INQFSELQLNRLNLSS----LPDN-------LPPQITVLEITQNA-LISL--P---ELPASLEYLDACDNR-LST--LPE 117 (571)
T ss_dssp HTTCSEEECCSSCCSC----CCSC-------CCTTCSEEECCSSC-CSCC--C---CCCTTCCEEECCSSC-CSC--CCC
T ss_pred cCCccEEEeCCCCCCc----cCHh-------HcCCCCEEECcCCC-Cccc--c---cccCCCCEEEccCCC-CCC--cch
Confidence 4578888888765432 2111 13678888888754 4432 2 346788888888764 443 222
Q ss_pred HHhcCccCcEEecCCCccCChHHHHHHHHhCCCCcEEecCCCCCCchHHHHHHHhcCCCCCEEccCCCCCCCcccHHHHH
Q 015721 145 VAEGCQDLRSLHLAGCKSVTDGTLQALSKNCRNLEELGLLGCTSISDSGVIDLVNGCQNIKFLDLNKCSNIGDNGISSVS 224 (402)
Q Consensus 145 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 224 (402)
+ ..+|+.|+++++. +.. ++. .+++|+.|+++++ .++. ++. .+++|+.|+++++.... ++. .
T Consensus 118 -l--~~~L~~L~Ls~N~-l~~--lp~---~l~~L~~L~Ls~N-~l~~--lp~---~l~~L~~L~Ls~N~L~~---lp~-l 178 (571)
T 3cvr_A 118 -L--PASLKHLDVDNNQ-LTM--LPE---LPALLEYINADNN-QLTM--LPE---LPTSLEVLSVRNNQLTF---LPE-L 178 (571)
T ss_dssp -C--CTTCCEEECCSSC-CSC--CCC---CCTTCCEEECCSS-CCSC--CCC---CCTTCCEEECCSSCCSC---CCC-C
T ss_pred -h--hcCCCEEECCCCc-CCC--CCC---cCccccEEeCCCC-ccCc--CCC---cCCCcCEEECCCCCCCC---cch-h
Confidence 1 1278888887763 222 222 3677777777763 3332 111 35677777777643222 111 1
Q ss_pred hcCCCCCEEEecCC
Q 015721 225 KSCSSLKTLKLLDC 238 (402)
Q Consensus 225 ~~~~~L~~L~l~~~ 238 (402)
. ++|+.|+++++
T Consensus 179 ~--~~L~~L~Ls~N 190 (571)
T 3cvr_A 179 P--ESLEALDVSTN 190 (571)
T ss_dssp C--TTCCEEECCSS
T ss_pred h--CCCCEEECcCC
Confidence 1 56677776664
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.38 E-value=1.5e-09 Score=101.42 Aligned_cols=125 Identities=14% Similarity=0.157 Sum_probs=74.6
Q ss_pred CCCcEEEecCCCCCChHHHHHHHHHhcCCCcEEEccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhccC
Q 015721 254 KNLETLIIGGCRDISDESIKHLAASCKSSLKNLRMDWCLNISDSSLSCILSQCRNLEALDIGCCEEVTDAAFQDLGEVEL 333 (402)
Q Consensus 254 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 333 (402)
..|+.|+++++. ++. +..+ ..+ ++|+.|+++++ .++ .++..+..+++|+.|+++++. ++. ++. ...++
T Consensus 441 ~~L~~L~Ls~n~-l~~--lp~~-~~l-~~L~~L~Ls~N-~l~--~lp~~~~~l~~L~~L~Ls~N~-l~~--lp~-l~~l~ 508 (567)
T 1dce_A 441 ADVRVLHLAHKD-LTV--LCHL-EQL-LLVTHLDLSHN-RLR--ALPPALAALRCLEVLQASDNA-LEN--VDG-VANLP 508 (567)
T ss_dssp TTCSEEECTTSC-CSS--CCCG-GGG-TTCCEEECCSS-CCC--CCCGGGGGCTTCCEEECCSSC-CCC--CGG-GTTCS
T ss_pred cCceEEEecCCC-CCC--CcCc-ccc-ccCcEeecCcc-ccc--ccchhhhcCCCCCEEECCCCC-CCC--Ccc-cCCCC
Confidence 368888887753 322 1111 222 78888888877 444 344457788888888888754 433 232 23445
Q ss_pred CCcEEEEeCCCCCHHHHHHHHHhCCCCCEEeccCCCCCCH-hHHHhhccCCCCcceEe
Q 015721 334 SLKVLKVNCPKVTVVGIGNVLEKCASLEYIDVRSCPHVTQ-ASCEEAGLQFPQCCKVN 390 (402)
Q Consensus 334 ~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~-~~~~~~~~~~p~l~~l~ 390 (402)
+|+.|+++.|.++....+..+..+++|+.|++++|+--.. .....+...+|+++.|+
T Consensus 509 ~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 509 RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp SCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 8888888777776642133456788888888888643211 11222333477777664
No 119
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.36 E-value=1e-07 Score=76.46 Aligned_cols=130 Identities=21% Similarity=0.200 Sum_probs=68.1
Q ss_pred HHHHhcCCCCCEEEecCCCCCChHHHHHHHHhCCCCcEEEecCCCCCChHHHHHHHHHhcCCCcEEEccCCCCCChHHHH
Q 015721 221 SSVSKSCSSLKTLKLLDCYKVGDKSILSLAKFCKNLETLIIGGCRDISDESIKHLAASCKSSLKNLRMDWCLNISDSSLS 300 (402)
Q Consensus 221 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~l~ 300 (402)
+.....+++|++|+++++. +.. ++ ....+++|+.|+++++. +.. +......+ ++|++|+++++ .++. +.
T Consensus 41 ~~~~~~l~~L~~L~ls~n~-l~~--l~-~~~~l~~L~~L~l~~n~-l~~--l~~~~~~~-~~L~~L~L~~N-~l~~--l~ 109 (198)
T 1ds9_A 41 DATLSTLKACKHLALSTNN-IEK--IS-SLSGMENLRILSLGRNL-IKK--IENLDAVA-DTLEELWISYN-QIAS--LS 109 (198)
T ss_dssp HHHHHHTTTCSEEECSEEE-ESC--CC-CHHHHTTCCEEEEEEEE-ECS--CSSHHHHH-HHCSEEEEEEE-ECCC--HH
T ss_pred hHHHhcCCCCCEEECCCCC-Ccc--cc-ccccCCCCCEEECCCCC-ccc--ccchhhcC-CcCCEEECcCC-cCCc--CC
Confidence 3345567778888887643 222 12 23346777777776642 221 11111112 56777777766 4442 23
Q ss_pred HHHhcCCCCcEEeccCCCCCChH-HHHHHHhccCCCcEEEEeCCCCCHH---------HHHHHHHhCCCCCEEe
Q 015721 301 CILSQCRNLEALDIGCCEEVTDA-AFQDLGEVELSLKVLKVNCPKVTVV---------GIGNVLEKCASLEYID 364 (402)
Q Consensus 301 ~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~---------~l~~~~~~~~~L~~L~ 364 (402)
-+..+++|+.|+++++. +++. .+..+ ..+++|+.|++..|.++.. .....+..+|+|+.|+
T Consensus 110 -~~~~l~~L~~L~l~~N~-i~~~~~~~~l-~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 110 -GIEKLVNLRVLYMSNNK-ITNWGEIDKL-AALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp -HHHHHHHSSEEEESEEE-CCCHHHHHHH-TTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred -ccccCCCCCEEECCCCc-CCchhHHHHH-hcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 25566777777777643 3332 22222 3344777777755554332 1122345677777765
No 120
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.33 E-value=2.1e-07 Score=75.86 Aligned_cols=107 Identities=21% Similarity=0.210 Sum_probs=48.2
Q ss_pred CCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCCCCcChHHHHHHHhcCccCcEEecCCCccCChHHHHHHHHhCCC
Q 015721 98 KSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLTDKGLSAVAEGCQDLRSLHLAGCKSVTDGTLQALSKNCRN 177 (402)
Q Consensus 98 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 177 (402)
+.++.|+++++. +...........+++|++|+++++. +.... +..+..+++|++|+++++.. ... ....+..+++
T Consensus 32 ~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~-~~~~~~l~~L~~L~Ls~N~l-~~~-~~~~~~~l~~ 106 (220)
T 2v70_A 32 QYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNK-ITDIE-EGAFEGASGVNEILLTSNRL-ENV-QHKMFKGLES 106 (220)
T ss_dssp TTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSSC-CCEEC-TTTTTTCTTCCEEECCSSCC-CCC-CGGGGTTCSS
T ss_pred CCCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCCc-CCEEC-HHHhCCCCCCCEEECCCCcc-Ccc-CHhHhcCCcC
Confidence 356677776643 3322111112456677777776654 33211 11234456666666666432 111 1112233556
Q ss_pred CcEEecCCCCCCchHHHHHHHhcCCCCCEEccCC
Q 015721 178 LEELGLLGCTSISDSGVIDLVNGCQNIKFLDLNK 211 (402)
Q Consensus 178 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 211 (402)
|++|+++++ .+... .+..+..+++|+.|++++
T Consensus 107 L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~L~~ 138 (220)
T 2v70_A 107 LKTLMLRSN-RITCV-GNDSFIGLSSVRLLSLYD 138 (220)
T ss_dssp CCEEECTTS-CCCCB-CTTSSTTCTTCSEEECTT
T ss_pred CCEEECCCC-cCCeE-CHhHcCCCccCCEEECCC
Confidence 666666553 22211 012233445555555555
No 121
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.32 E-value=1.7e-07 Score=73.55 Aligned_cols=11 Identities=9% Similarity=0.045 Sum_probs=5.0
Q ss_pred CCCCcEEEecC
Q 015721 253 CKNLETLIIGG 263 (402)
Q Consensus 253 ~~~L~~L~l~~ 263 (402)
+++|+.|++++
T Consensus 139 l~~L~~Ld~~~ 149 (176)
T 1a9n_A 139 VPQVRVLDFQK 149 (176)
T ss_dssp CTTCSEETTEE
T ss_pred CCccceeCCCc
Confidence 44444444433
No 122
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.31 E-value=2.4e-06 Score=79.64 Aligned_cols=192 Identities=11% Similarity=0.082 Sum_probs=119.8
Q ss_pred CCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCCCCcChHHHHHHHhcCccCcEEecCCCccCChHHHHHHHHhCCC
Q 015721 98 KSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLTDKGLSAVAEGCQDLRSLHLAGCKSVTDGTLQALSKNCRN 177 (402)
Q Consensus 98 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 177 (402)
.+|+.|+++++. ++. ++. .-+++|++|+++++. ++. ++ ..+++|+.|+++++. +.. ++. . ..+
T Consensus 59 ~~L~~L~Ls~n~-L~~--lp~--~l~~~L~~L~Ls~N~-l~~--ip---~~l~~L~~L~Ls~N~-l~~--ip~-l--~~~ 121 (571)
T 3cvr_A 59 NQFSELQLNRLN-LSS--LPD--NLPPQITVLEITQNA-LIS--LP---ELPASLEYLDACDNR-LST--LPE-L--PAS 121 (571)
T ss_dssp TTCSEEECCSSC-CSC--CCS--CCCTTCSEEECCSSC-CSC--CC---CCCTTCCEEECCSSC-CSC--CCC-C--CTT
T ss_pred CCccEEEeCCCC-CCc--cCH--hHcCCCCEEECcCCC-Ccc--cc---cccCCCCEEEccCCC-CCC--cch-h--hcC
Confidence 489999999854 443 111 124789999999875 553 33 457999999999874 332 222 1 238
Q ss_pred CcEEecCCCCCCchHHHHHHHhcCCCCCEEccCCCCCCCcccHHHHHhcCCCCCEEEecCCCCCChHHHHHHHHhCCCCc
Q 015721 178 LEELGLLGCTSISDSGVIDLVNGCQNIKFLDLNKCSNIGDNGISSVSKSCSSLKTLKLLDCYKVGDKSILSLAKFCKNLE 257 (402)
Q Consensus 178 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 257 (402)
|+.|+++++ .++. ++. .+++|+.|+++++.. .. ++. .+++|+.|+++++. +.. ++. + .++|+
T Consensus 122 L~~L~Ls~N-~l~~--lp~---~l~~L~~L~Ls~N~l-~~--lp~---~l~~L~~L~Ls~N~-L~~--lp~-l--~~~L~ 183 (571)
T 3cvr_A 122 LKHLDVDNN-QLTM--LPE---LPALLEYINADNNQL-TM--LPE---LPTSLEVLSVRNNQ-LTF--LPE-L--PESLE 183 (571)
T ss_dssp CCEEECCSS-CCSC--CCC---CCTTCCEEECCSSCC-SC--CCC---CCTTCCEEECCSSC-CSC--CCC-C--CTTCC
T ss_pred CCEEECCCC-cCCC--CCC---cCccccEEeCCCCcc-Cc--CCC---cCCCcCEEECCCCC-CCC--cch-h--hCCCC
Confidence 999999984 4443 222 578999999998543 32 222 56889999999864 322 122 1 27899
Q ss_pred EEEecCCCCCChH-HHH-HHHHHhcCCCcEEEccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHh
Q 015721 258 TLIIGGCRDISDE-SIK-HLAASCKSSLKNLRMDWCLNISDSSLSCILSQCRNLEALDIGCCEEVTDAAFQDLGE 330 (402)
Q Consensus 258 ~L~l~~~~~~~~~-~~~-~l~~~~~~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 330 (402)
.|+++++. ++.. .+. .+... .+.|+.|+++++ .++ .++..+..+++|+.|++++|. ++......+..
T Consensus 184 ~L~Ls~N~-L~~lp~~~~~L~~~-~~~L~~L~Ls~N-~l~--~lp~~l~~l~~L~~L~L~~N~-l~~~~p~~l~~ 252 (571)
T 3cvr_A 184 ALDVSTNL-LESLPAVPVRNHHS-EETEIFFRCREN-RIT--HIPENILSLDPTCTIILEDNP-LSSRIRESLSQ 252 (571)
T ss_dssp EEECCSSC-CSSCCCCC---------CCEEEECCSS-CCC--CCCGGGGGSCTTEEEECCSSS-CCHHHHHHHHH
T ss_pred EEECcCCC-CCchhhHHHhhhcc-cccceEEecCCC-cce--ecCHHHhcCCCCCEEEeeCCc-CCCcCHHHHHH
Confidence 99998863 3311 010 11011 133499999987 454 344445569999999999854 66555555443
No 123
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.30 E-value=3.4e-07 Score=75.19 Aligned_cols=105 Identities=19% Similarity=0.177 Sum_probs=47.5
Q ss_pred CCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCCCCcChHHHHHHHhcCccCcEEecCCCccCChHHHHHHHHhCCC
Q 015721 98 KSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLTDKGLSAVAEGCQDLRSLHLAGCKSVTDGTLQALSKNCRN 177 (402)
Q Consensus 98 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 177 (402)
++|+.|+++++. +....... ...+++|++|+++++. +.... +..+..+++|+.|+++++. +... ....+..+++
T Consensus 40 ~~L~~L~Ls~n~-i~~~~~~~-~~~l~~L~~L~L~~N~-l~~i~-~~~~~~l~~L~~L~Ls~N~-l~~l-~~~~~~~l~~ 113 (229)
T 3e6j_A 40 TNAQILYLHDNQ-ITKLEPGV-FDSLINLKELYLGSNQ-LGALP-VGVFDSLTQLTVLDLGTNQ-LTVL-PSAVFDRLVH 113 (229)
T ss_dssp TTCSEEECCSSC-CCCCCTTT-TTTCTTCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSSC-CCCC-CTTTTTTCTT
T ss_pred CCCCEEEcCCCc-cCccCHHH-hhCccCCcEEECCCCC-CCCcC-hhhcccCCCcCEEECCCCc-CCcc-ChhHhCcchh
Confidence 567777776643 33221111 2345667777766654 32211 1122445666666666542 2110 1112223555
Q ss_pred CcEEecCCCCCCchHHHHHHHhcCCCCCEEccCC
Q 015721 178 LEELGLLGCTSISDSGVIDLVNGCQNIKFLDLNK 211 (402)
Q Consensus 178 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 211 (402)
|+.|+++++ .+.. ++..+..+++|+.|++++
T Consensus 114 L~~L~Ls~N-~l~~--lp~~~~~l~~L~~L~L~~ 144 (229)
T 3e6j_A 114 LKELFMCCN-KLTE--LPRGIERLTHLTHLALDQ 144 (229)
T ss_dssp CCEEECCSS-CCCS--CCTTGGGCTTCSEEECCS
T ss_pred hCeEeccCC-cccc--cCcccccCCCCCEEECCC
Confidence 555655552 2321 222234445555555554
No 124
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.30 E-value=1.9e-09 Score=94.93 Aligned_cols=225 Identities=17% Similarity=0.129 Sum_probs=124.0
Q ss_pred CcceEEeccCCcCCCCCCCCChhhHHHHHhhCCCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCCCCcChHHHHHH
Q 015721 66 SRLVELDLSQSVSRSFYPGVTDSDLAVIADGFKSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLTDKGLSAV 145 (402)
Q Consensus 66 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 145 (402)
+++++|+++++.... +....+ ..+++|++|+++++......... ....+++++++.+..+..+... .+..
T Consensus 30 ~~l~~L~Ls~N~i~~----i~~~~f----~~l~~L~~L~Ls~N~i~~~i~~~-~f~~L~~l~~~l~~~~N~l~~l-~~~~ 99 (350)
T 4ay9_X 30 RNAIELRFVLTKLRV----IQKGAF----SGFGDLEKIEISQNDVLEVIEAD-VFSNLPKLHEIRIEKANNLLYI-NPEA 99 (350)
T ss_dssp TTCSEEEEESCCCSE----ECTTSS----TTCTTCCEEEEECCTTCCEECTT-SBCSCTTCCEEEEEEETTCCEE-CTTS
T ss_pred CCCCEEEccCCcCCC----cCHHHH----cCCCCCCEEECcCCCCCCccChh-HhhcchhhhhhhcccCCccccc-Cchh
Confidence 578999999876432 222212 46889999999886532322111 1245677776554433334321 1223
Q ss_pred HhcCccCcEEecCCCccCChHHHHHHHHhCCCCcEEecCCCCCCchHHHHHHHhcC-CCCCEEccCCCCCCCcccHHHHH
Q 015721 146 AEGCQDLRSLHLAGCKSVTDGTLQALSKNCRNLEELGLLGCTSISDSGVIDLVNGC-QNIKFLDLNKCSNIGDNGISSVS 224 (402)
Q Consensus 146 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~ 224 (402)
+..+++|+.|+++++...... ........++..+++.++..+...... .+..+ ..++.|+++++. +.. ++...
T Consensus 100 f~~l~~L~~L~l~~n~l~~~~--~~~~~~~~~l~~l~l~~~~~i~~l~~~-~f~~~~~~l~~L~L~~N~-i~~--i~~~~ 173 (350)
T 4ay9_X 100 FQNLPNLQYLLISNTGIKHLP--DVHKIHSLQKVLLDIQDNINIHTIERN-SFVGLSFESVILWLNKNG-IQE--IHNSA 173 (350)
T ss_dssp BCCCTTCCEEEEEEECCSSCC--CCTTCCBSSCEEEEEESCTTCCEECTT-SSTTSBSSCEEEECCSSC-CCE--ECTTS
T ss_pred hhhccccccccccccccccCC--chhhcccchhhhhhhcccccccccccc-chhhcchhhhhhcccccc-ccC--CChhh
Confidence 456889999999875321111 011112456777777654444321111 12222 468888888743 332 22111
Q ss_pred hcCCCCCEEEecCCCCCChHHHHHHHHhCCCCcEEEecCCCCCChHHHHHHHHHhcCCCcEEEccCCCCCChHHHHHHHh
Q 015721 225 KSCSSLKTLKLLDCYKVGDKSILSLAKFCKNLETLIIGGCRDISDESIKHLAASCKSSLKNLRMDWCLNISDSSLSCILS 304 (402)
Q Consensus 225 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~l~~~l~ 304 (402)
....+|+++.+.++..++... ...+..+++|+.|+++++. ++. +....+.+|++|.+.++.++. .++. +.
T Consensus 174 f~~~~L~~l~l~~~n~l~~i~-~~~f~~l~~L~~LdLs~N~-l~~-----lp~~~~~~L~~L~~l~~~~l~--~lP~-l~ 243 (350)
T 4ay9_X 174 FNGTQLDELNLSDNNNLEELP-NDVFHGASGPVILDISRTR-IHS-----LPSYGLENLKKLRARSTYNLK--KLPT-LE 243 (350)
T ss_dssp STTEEEEEEECTTCTTCCCCC-TTTTTTEECCSEEECTTSC-CCC-----CCSSSCTTCCEEECTTCTTCC--CCCC-TT
T ss_pred ccccchhHHhhccCCcccCCC-HHHhccCcccchhhcCCCC-cCc-----cChhhhccchHhhhccCCCcC--cCCC-ch
Confidence 234678888887654444221 1233457899999998753 332 111224788888887765554 2332 56
Q ss_pred cCCCCcEEeccC
Q 015721 305 QCRNLEALDIGC 316 (402)
Q Consensus 305 ~~~~L~~L~l~~ 316 (402)
.+++|+.+++.+
T Consensus 244 ~l~~L~~l~l~~ 255 (350)
T 4ay9_X 244 KLVALMEASLTY 255 (350)
T ss_dssp TCCSCCEEECSC
T ss_pred hCcChhhCcCCC
Confidence 788888888875
No 125
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.26 E-value=5.9e-07 Score=72.60 Aligned_cols=106 Identities=18% Similarity=0.143 Sum_probs=45.8
Q ss_pred CCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCCCCcChHHHHHHHhcCccCcEEecCCCccCChHHHHHHHHhCCC
Q 015721 98 KSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLTDKGLSAVAEGCQDLRSLHLAGCKSVTDGTLQALSKNCRN 177 (402)
Q Consensus 98 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 177 (402)
++|++|+++++. +..... .....+++|++|+++++. +... .+..+..+++|++|+++++. +... .......+++
T Consensus 28 ~~l~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~Ls~n~-l~~~-~~~~~~~l~~ 101 (208)
T 2o6s_A 28 AQTTYLDLETNS-LKSLPN-GVFDELTSLTQLYLGGNK-LQSL-PNGVFNKLTSLTYLNLSTNQ-LQSL-PNGVFDKLTQ 101 (208)
T ss_dssp TTCSEEECCSSC-CCCCCT-TTTTTCTTCSEEECCSSC-CCCC-CTTTTTTCTTCCEEECCSSC-CCCC-CTTTTTTCTT
T ss_pred CCCcEEEcCCCc-cCcCCh-hhhcccccCcEEECCCCc-cCcc-ChhhcCCCCCcCEEECCCCc-CCcc-CHhHhcCccC
Confidence 466677776643 332211 112345666666666643 3211 11122345666666666542 1110 1111223555
Q ss_pred CcEEecCCCCCCchHHHHHHHhcCCCCCEEccCC
Q 015721 178 LEELGLLGCTSISDSGVIDLVNGCQNIKFLDLNK 211 (402)
Q Consensus 178 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 211 (402)
|++|+++++ .+... ....+..+++|++|++++
T Consensus 102 L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~l~~ 133 (208)
T 2o6s_A 102 LKELALNTN-QLQSL-PDGVFDKLTQLKDLRLYQ 133 (208)
T ss_dssp CCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCS
T ss_pred CCEEEcCCC-cCccc-CHhHhccCCcCCEEECCC
Confidence 555555542 22210 011233445555555554
No 126
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.25 E-value=4.3e-07 Score=74.03 Aligned_cols=106 Identities=23% Similarity=0.249 Sum_probs=48.8
Q ss_pred CCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCCCCcChHHHHHHHhcCccCcEEecCCCccCChHHHHHHHHhCCC
Q 015721 98 KSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLTDKGLSAVAEGCQDLRSLHLAGCKSVTDGTLQALSKNCRN 177 (402)
Q Consensus 98 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 177 (402)
++++.|+++++. +.......+ ..+++|++|+++++. +... .+..+.++++|++|+++++.. .. .....+..+++
T Consensus 32 ~~l~~L~l~~n~-i~~i~~~~~-~~l~~L~~L~Ls~N~-i~~~-~~~~~~~l~~L~~L~Ls~N~l-~~-l~~~~f~~l~~ 105 (220)
T 2v9t_B 32 ETITEIRLEQNT-IKVIPPGAF-SPYKKLRRIDLSNNQ-ISEL-APDAFQGLRSLNSLVLYGNKI-TE-LPKSLFEGLFS 105 (220)
T ss_dssp TTCCEEECCSSC-CCEECTTSS-TTCTTCCEEECCSSC-CCEE-CTTTTTTCSSCCEEECCSSCC-CC-CCTTTTTTCTT
T ss_pred cCCCEEECCCCc-CCCcCHhHh-hCCCCCCEEECCCCc-CCCc-CHHHhhCCcCCCEEECCCCcC-Cc-cCHhHccCCCC
Confidence 467777776643 332221112 345667777776654 3321 112234466666666666422 11 11112233556
Q ss_pred CcEEecCCCCCCchHHHHHHHhcCCCCCEEccCC
Q 015721 178 LEELGLLGCTSISDSGVIDLVNGCQNIKFLDLNK 211 (402)
Q Consensus 178 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 211 (402)
|+.|+++++ .+... ....+..+++|+.|++++
T Consensus 106 L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~L~~ 137 (220)
T 2v9t_B 106 LQLLLLNAN-KINCL-RVDAFQDLHNLNLLSLYD 137 (220)
T ss_dssp CCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCC-CCCEe-CHHHcCCCCCCCEEECCC
Confidence 666666552 22221 012234445555555555
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.20 E-value=3.1e-07 Score=72.01 Aligned_cols=133 Identities=15% Similarity=0.069 Sum_probs=82.1
Q ss_pred cCCCCCEEEecCCCCCChHHHHHHHHhCCCCcEEEecCCCCCChHHHHHHHHHhcCCCcEEEccCCCCCChHHHHHHHhc
Q 015721 226 SCSSLKTLKLLDCYKVGDKSILSLAKFCKNLETLIIGGCRDISDESIKHLAASCKSSLKNLRMDWCLNISDSSLSCILSQ 305 (402)
Q Consensus 226 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~l~~~l~~ 305 (402)
.+++|++|+++++. +.. ++.+....++|+.|+++++. ++.. ..+ .. .++|++|+++++ .++.. ...++..
T Consensus 17 ~~~~L~~L~l~~n~-l~~--i~~~~~~~~~L~~L~Ls~N~-l~~~--~~l-~~-l~~L~~L~Ls~N-~l~~~-~~~~~~~ 86 (176)
T 1a9n_A 17 NAVRDRELDLRGYK-IPV--IENLGATLDQFDAIDFSDNE-IRKL--DGF-PL-LRRLKTLLVNNN-RICRI-GEGLDQA 86 (176)
T ss_dssp CTTSCEEEECTTSC-CCS--CCCGGGGTTCCSEEECCSSC-CCEE--CCC-CC-CSSCCEEECCSS-CCCEE-CSCHHHH
T ss_pred CcCCceEEEeeCCC-Cch--hHHhhhcCCCCCEEECCCCC-CCcc--ccc-cc-CCCCCEEECCCC-ccccc-Ccchhhc
Confidence 46789999998863 332 22333434589999998863 3331 111 12 278999999887 44421 1133578
Q ss_pred CCCCcEEeccCCCCCChH-HHHHHHhccCCCcEEEEeCCCCCHHHH--HHHHHhCCCCCEEeccCCCC
Q 015721 306 CRNLEALDIGCCEEVTDA-AFQDLGEVELSLKVLKVNCPKVTVVGI--GNVLEKCASLEYIDVRSCPH 370 (402)
Q Consensus 306 ~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~l--~~~~~~~~~L~~L~l~~c~~ 370 (402)
+++|+.|+++++. +++. .+..+ ..+++|+.|+++.|.++...- ...+..+|+|+.|++++++.
T Consensus 87 l~~L~~L~L~~N~-i~~~~~~~~l-~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 87 LPDLTELILTNNS-LVELGDLDPL-ASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CTTCCEEECCSCC-CCCGGGGGGG-GGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCCCCEEECCCCc-CCcchhhHhh-hcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 8899999999854 3321 11222 345589999996666654221 12466889999999888653
No 128
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.19 E-value=7.2e-07 Score=78.77 Aligned_cols=162 Identities=18% Similarity=0.080 Sum_probs=80.9
Q ss_pred CCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCCCCcChHHHHHHHhcCccCcEEecCCCccCChHHHHHHHHhCCC
Q 015721 98 KSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLTDKGLSAVAEGCQDLRSLHLAGCKSVTDGTLQALSKNCRN 177 (402)
Q Consensus 98 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 177 (402)
+.++.|+++++. ++......+...+++|++|+++++. +.... +..+..+++|++|+++++. +... ....+..+++
T Consensus 39 ~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~-~~~~~~l~~L~~L~Ls~N~-l~~~-~~~~~~~l~~ 113 (361)
T 2xot_A 39 SYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNH-LNFIS-SEAFVPVPNLRYLDLSSNH-LHTL-DEFLFSDLQA 113 (361)
T ss_dssp TTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSSC-CCEEC-TTTTTTCTTCCEEECCSSC-CCEE-CTTTTTTCTT
T ss_pred CCCCEEECCCCC-CCccChhhhhhcccccCEEECCCCc-CCccC-hhhccCCCCCCEEECCCCc-CCcC-CHHHhCCCcC
Confidence 457777777643 4433222221256778888877754 43211 1223457777788777753 2221 1122344677
Q ss_pred CcEEecCCCCCCchHHHHHHHhcCCCCCEEccCCCCCCCcccHHHH--HhcCCCCCEEEecCCCCCChHHHHHHHHhCCC
Q 015721 178 LEELGLLGCTSISDSGVIDLVNGCQNIKFLDLNKCSNIGDNGISSV--SKSCSSLKTLKLLDCYKVGDKSILSLAKFCKN 255 (402)
Q Consensus 178 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 255 (402)
|+.|+++++ .+... ....+..+++|+.|+++++. +.......+ ...+++|+.|+++++. +...... .+..++.
T Consensus 114 L~~L~L~~N-~i~~~-~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~-~~~~l~~ 188 (361)
T 2xot_A 114 LEVLLLYNN-HIVVV-DRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNK-LKKLPLT-DLQKLPA 188 (361)
T ss_dssp CCEEECCSS-CCCEE-CTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSC-CCCCCHH-HHHHSCH
T ss_pred CCEEECCCC-cccEE-CHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCC-CCccCHH-HhhhccH
Confidence 777777763 33321 12234566777777777643 222111100 0246677777777643 3222211 2223444
Q ss_pred --CcEEEecCCCCCCh
Q 015721 256 --LETLIIGGCRDISD 269 (402)
Q Consensus 256 --L~~L~l~~~~~~~~ 269 (402)
++.|++++++...+
T Consensus 189 ~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 189 WVKNGLYLHNNPLECD 204 (361)
T ss_dssp HHHTTEECCSSCEECC
T ss_pred hhcceEEecCCCccCC
Confidence 36677766543333
No 129
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.17 E-value=2.4e-09 Score=94.33 Aligned_cols=224 Identities=13% Similarity=0.068 Sum_probs=126.8
Q ss_pred CCCCeEecCCCCCcChHHHHHHHhcCccCcEEecCCCccCChHHHHHHHHhCCCCcEEecCCCCCCchHHHHHHHhcCCC
Q 015721 124 CSLQSLDLSYCRKLTDKGLSAVAEGCQDLRSLHLAGCKSVTDGTLQALSKNCRNLEELGLLGCTSISDSGVIDLVNGCQN 203 (402)
Q Consensus 124 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 203 (402)
+++++|+++++. ++.-. +..+.++++|++|+++++...... ....+.++++++++.+..+..+... ....+..+++
T Consensus 30 ~~l~~L~Ls~N~-i~~i~-~~~f~~l~~L~~L~Ls~N~i~~~i-~~~~f~~L~~l~~~l~~~~N~l~~l-~~~~f~~l~~ 105 (350)
T 4ay9_X 30 RNAIELRFVLTK-LRVIQ-KGAFSGFGDLEKIEISQNDVLEVI-EADVFSNLPKLHEIRIEKANNLLYI-NPEAFQNLPN 105 (350)
T ss_dssp TTCSEEEEESCC-CSEEC-TTSSTTCTTCCEEEEECCTTCCEE-CTTSBCSCTTCCEEEEEEETTCCEE-CTTSBCCCTT
T ss_pred CCCCEEEccCCc-CCCcC-HHHHcCCCCCCEEECcCCCCCCcc-ChhHhhcchhhhhhhcccCCccccc-Cchhhhhccc
Confidence 689999999865 54311 123467899999999987533221 1122344777776555443444331 1234667899
Q ss_pred CCEEccCCCCCCCcccHHHHHhcCCCCCEEEecCCCCCChHHHHHHHHhCCCCcEEEecCCCCCChHHHHHHHHHhcCCC
Q 015721 204 IKFLDLNKCSNIGDNGISSVSKSCSSLKTLKLLDCYKVGDKSILSLAKFCKNLETLIIGGCRDISDESIKHLAASCKSSL 283 (402)
Q Consensus 204 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L 283 (402)
|++|+++++........ ......++..+.+.++..+.......+......++.|+++++. ++...... .. ..+|
T Consensus 106 L~~L~l~~n~l~~~~~~--~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~~i~~~~--f~-~~~L 179 (350)
T 4ay9_X 106 LQYLLISNTGIKHLPDV--HKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNSA--FN-GTQL 179 (350)
T ss_dssp CCEEEEEEECCSSCCCC--TTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEECTTS--ST-TEEE
T ss_pred cccccccccccccCCch--hhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc-ccCCChhh--cc-ccch
Confidence 99999987543221111 1113345677777665444322111122223468889987753 32110000 01 1568
Q ss_pred cEEEccCCCCCChHHHH-HHHhcCCCCcEEeccCCCCCChHHHHHHHhccCCCcEEEE-eCCCCCHHHHHHHHHhCCCCC
Q 015721 284 KNLRMDWCLNISDSSLS-CILSQCRNLEALDIGCCEEVTDAAFQDLGEVELSLKVLKV-NCPKVTVVGIGNVLEKCASLE 361 (402)
Q Consensus 284 ~~L~l~~~~~~~~~~l~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~l~~~~~~~~~L~ 361 (402)
++|.+.++..++ .+. ..+..+++|+.|+++++. ++.-.. ..+.+|+.|.+ +++.++... . +..+++|+
T Consensus 180 ~~l~l~~~n~l~--~i~~~~f~~l~~L~~LdLs~N~-l~~lp~----~~~~~L~~L~~l~~~~l~~lP--~-l~~l~~L~ 249 (350)
T 4ay9_X 180 DELNLSDNNNLE--ELPNDVFHGASGPVILDISRTR-IHSLPS----YGLENLKKLRARSTYNLKKLP--T-LEKLVALM 249 (350)
T ss_dssp EEEECTTCTTCC--CCCTTTTTTEECCSEEECTTSC-CCCCCS----SSCTTCCEEECTTCTTCCCCC--C-TTTCCSCC
T ss_pred hHHhhccCCccc--CCCHHHhccCcccchhhcCCCC-cCccCh----hhhccchHhhhccCCCcCcCC--C-chhCcChh
Confidence 888887653444 121 246788999999999853 432111 22448888888 666665432 1 35788899
Q ss_pred EEeccC
Q 015721 362 YIDVRS 367 (402)
Q Consensus 362 ~L~l~~ 367 (402)
.+++.+
T Consensus 250 ~l~l~~ 255 (350)
T 4ay9_X 250 EASLTY 255 (350)
T ss_dssp EEECSC
T ss_pred hCcCCC
Confidence 998865
No 130
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.16 E-value=4.6e-07 Score=74.61 Aligned_cols=40 Identities=23% Similarity=0.103 Sum_probs=35.8
Q ss_pred ccccCCHHHHHHHHccCCCcchhhHHHHhhHHHHHhhhhcc
Q 015721 6 INEVLRDDELRSILSRLEDDKDKERFGLVCKRWLHLQSTER 46 (402)
Q Consensus 6 ~~~~LP~eil~~If~~L~~~~~~~~~~~vcr~W~~~~~~~~ 46 (402)
.++.||+||+.+||+||+ .+|++++++|||+|+.++.+..
T Consensus 4 ~l~~LP~ei~l~IlsfL~-p~DL~~l~~vcr~Wr~la~D~~ 43 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFLS-PHDLCQLGSTNHYWNETVRDPI 43 (312)
T ss_dssp HHHHSCHHHHHHHHHTSC-HHHHHHHHTTCHHHHHHHTCHH
T ss_pred hhHhCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhccch
Confidence 356799999999999999 5999999999999999987653
No 131
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.14 E-value=0.0002 Score=56.19 Aligned_cols=120 Identities=18% Similarity=0.193 Sum_probs=67.9
Q ss_pred HHHHHHhCCCCcEEEecCCCCCChHHHHHHHHHhc--CCCcEEEccCCCCCChHH---HHHHHhcCCCCcEEeccCCCCC
Q 015721 246 ILSLAKFCKNLETLIIGGCRDISDESIKHLAASCK--SSLKNLRMDWCLNISDSS---LSCILSQCRNLEALDIGCCEEV 320 (402)
Q Consensus 246 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~--~~L~~L~l~~~~~~~~~~---l~~~l~~~~~L~~L~l~~~~~~ 320 (402)
+..+...-+.|++|++++...+.+.+...++.... ..|+.|+|+++ .+.+.+ +...+..-+.|++|++++ ..+
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~-N~I 110 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVES-NFL 110 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCS-SBC
T ss_pred HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCC-CcC
Confidence 33344444566666665544556666555554432 34677777666 555544 333455556677777776 446
Q ss_pred ChHHHHHHHhcc---CCCcEEEEeC--C-CCCHHH---HHHHHHhCCCCCEEeccC
Q 015721 321 TDAAFQDLGEVE---LSLKVLKVNC--P-KVTVVG---IGNVLEKCASLEYIDVRS 367 (402)
Q Consensus 321 ~~~~~~~~~~~~---~~L~~L~l~~--~-~~~~~~---l~~~~~~~~~L~~L~l~~ 367 (402)
++.+...+.... ..|++|+++. + .+...+ +...++.-++|+.|+++.
T Consensus 111 g~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~ 166 (197)
T 1pgv_A 111 TPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF 166 (197)
T ss_dssp CHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred CHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccC
Confidence 666666655433 2577777732 2 445432 445556667777777765
No 132
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.13 E-value=1.1e-06 Score=71.00 Aligned_cols=132 Identities=18% Similarity=0.191 Sum_probs=84.4
Q ss_pred cCcceEEeccCCcCCCCCCCCChhhHHHHHhhCCCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCCCCcChHHHHH
Q 015721 65 FSRLVELDLSQSVSRSFYPGVTDSDLAVIADGFKSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLTDKGLSA 144 (402)
Q Consensus 65 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 144 (402)
.+++++|+++++... .+.... ...+++|++|+++++. +..... .....+++|++|+++++. +... .+.
T Consensus 27 ~~~l~~L~l~~n~l~----~~~~~~----~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~-~~~ 94 (208)
T 2o6s_A 27 PAQTTYLDLETNSLK----SLPNGV----FDELTSLTQLYLGGNK-LQSLPN-GVFNKLTSLTYLNLSTNQ-LQSL-PNG 94 (208)
T ss_dssp CTTCSEEECCSSCCC----CCCTTT----TTTCTTCSEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSC-CCCC-CTT
T ss_pred CCCCcEEEcCCCccC----cCChhh----hcccccCcEEECCCCc-cCccCh-hhcCCCCCcCEEECCCCc-CCcc-CHh
Confidence 357899999987642 222221 2468999999999854 443221 222568999999999875 4421 122
Q ss_pred HHhcCccCcEEecCCCccCChHHHHHHHHhCCCCcEEecCCCCCCchHHHHHHHhcCCCCCEEccCCC
Q 015721 145 VAEGCQDLRSLHLAGCKSVTDGTLQALSKNCRNLEELGLLGCTSISDSGVIDLVNGCQNIKFLDLNKC 212 (402)
Q Consensus 145 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 212 (402)
.+..+++|++|+++++. +... ....+..+++|+.|+++++ .++.. ....+..+++|++|+++++
T Consensus 95 ~~~~l~~L~~L~L~~N~-l~~~-~~~~~~~l~~L~~L~l~~N-~l~~~-~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 95 VFDKLTQLKELALNTNQ-LQSL-PDGVFDKLTQLKDLRLYQN-QLKSV-PDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp TTTTCTTCCEEECCSSC-CCCC-CTTTTTTCTTCCEEECCSS-CCSCC-CTTTTTTCTTCCEEECCSC
T ss_pred HhcCccCCCEEEcCCCc-Cccc-CHhHhccCCcCCEEECCCC-cccee-CHHHhccCCCccEEEecCC
Confidence 34678999999999864 3221 1223445899999999984 34321 1123456778888888774
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.12 E-value=3.6e-07 Score=73.19 Aligned_cols=59 Identities=19% Similarity=0.293 Sum_probs=26.7
Q ss_pred HhCCCCcEEecCCCCCCchHHHHHHHhcCCCCCEEccCCCCCCCcccHHHHHhcCCCCCEEEecCC
Q 015721 173 KNCRNLEELGLLGCTSISDSGVIDLVNGCQNIKFLDLNKCSNIGDNGISSVSKSCSSLKTLKLLDC 238 (402)
Q Consensus 173 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 238 (402)
..+++|++|+++++ .+.. ++ .+..+++|+.|+++++. +.. ++.....+++|++|+++++
T Consensus 45 ~~l~~L~~L~ls~n-~l~~--l~-~~~~l~~L~~L~l~~n~-l~~--l~~~~~~~~~L~~L~L~~N 103 (198)
T 1ds9_A 45 STLKACKHLALSTN-NIEK--IS-SLSGMENLRILSLGRNL-IKK--IENLDAVADTLEELWISYN 103 (198)
T ss_dssp HHTTTCSEEECSEE-EESC--CC-CHHHHTTCCEEEEEEEE-ECS--CSSHHHHHHHCSEEEEEEE
T ss_pred hcCCCCCEEECCCC-CCcc--cc-ccccCCCCCEEECCCCC-ccc--ccchhhcCCcCCEEECcCC
Confidence 34666666666653 2222 11 33344566666665532 111 2222223345555555543
No 134
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.09 E-value=5.7e-07 Score=73.84 Aligned_cols=132 Identities=16% Similarity=0.155 Sum_probs=87.0
Q ss_pred CCCCEEEecCCCCCChHHHHHHHHhCCCCcEEEecCCCC--CChHHHHHHHHHhcCCCcEEEccCCCCCChHHHHHHHhc
Q 015721 228 SSLKTLKLLDCYKVGDKSILSLAKFCKNLETLIIGGCRD--ISDESIKHLAASCKSSLKNLRMDWCLNISDSSLSCILSQ 305 (402)
Q Consensus 228 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~l~~~l~~ 305 (402)
++|+.|+++++. +.... +..+..+++|+.|+++++.- +....+..+ ++|+.|+++++ .++. .....+..
T Consensus 40 ~~L~~L~Ls~n~-i~~~~-~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l-----~~L~~L~Ls~N-~l~~-l~~~~~~~ 110 (229)
T 3e6j_A 40 TNAQILYLHDNQ-ITKLE-PGVFDSLINLKELYLGSNQLGALPVGVFDSL-----TQLTVLDLGTN-QLTV-LPSAVFDR 110 (229)
T ss_dssp TTCSEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-----TTCCEEECCSS-CCCC-CCTTTTTT
T ss_pred CCCCEEEcCCCc-cCccC-HHHhhCccCCcEEECCCCCCCCcChhhcccC-----CCcCEEECCCC-cCCc-cChhHhCc
Confidence 789999999864 32211 22344578999999988642 111222222 89999999987 4442 11233678
Q ss_pred CCCCcEEeccCCCCCChHHHHHHHhccCCCcEEEEeCCCCCHHHHHHHHHhCCCCCEEeccCCCCCC
Q 015721 306 CRNLEALDIGCCEEVTDAAFQDLGEVELSLKVLKVNCPKVTVVGIGNVLEKCASLEYIDVRSCPHVT 372 (402)
Q Consensus 306 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~ 372 (402)
+++|+.|+++++. ++. ++......++|+.|++..|.++.... ..+..+++|+.|++.+++...
T Consensus 111 l~~L~~L~Ls~N~-l~~--lp~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 111 LVHLKELFMCCNK-LTE--LPRGIERLTHLTHLALDQNQLKSIPH-GAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CTTCCEEECCSSC-CCS--CCTTGGGCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECTTSCBCT
T ss_pred chhhCeEeccCCc-ccc--cCcccccCCCCCEEECCCCcCCccCH-HHHhCCCCCCEEEeeCCCccC
Confidence 9999999999854 432 22222455699999997777775432 334678999999999987553
No 135
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.09 E-value=6.9e-07 Score=72.82 Aligned_cols=132 Identities=21% Similarity=0.263 Sum_probs=83.8
Q ss_pred CcceEEeccCCcCCCCCCCCChhhHHHHHhhCCCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCCCCcChHHHHHH
Q 015721 66 SRLVELDLSQSVSRSFYPGVTDSDLAVIADGFKSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLTDKGLSAV 145 (402)
Q Consensus 66 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 145 (402)
++++.|+++++.... +....+ ..+++|+.|+++++. +.......+ ..+++|++|+++++. +... .+..
T Consensus 32 ~~l~~L~l~~n~i~~----i~~~~~----~~l~~L~~L~Ls~N~-i~~~~~~~~-~~l~~L~~L~Ls~N~-l~~l-~~~~ 99 (220)
T 2v9t_B 32 ETITEIRLEQNTIKV----IPPGAF----SPYKKLRRIDLSNNQ-ISELAPDAF-QGLRSLNSLVLYGNK-ITEL-PKSL 99 (220)
T ss_dssp TTCCEEECCSSCCCE----ECTTSS----TTCTTCCEEECCSSC-CCEECTTTT-TTCSSCCEEECCSSC-CCCC-CTTT
T ss_pred cCCCEEECCCCcCCC----cCHhHh----hCCCCCCEEECCCCc-CCCcCHHHh-hCCcCCCEEECCCCc-CCcc-CHhH
Confidence 578999999875432 221111 458899999999864 544322233 568999999999875 4421 1223
Q ss_pred HhcCccCcEEecCCCccCChHHHHHHHHhCCCCcEEecCCCCCCchHHHHHHHhcCCCCCEEccCCCC
Q 015721 146 AEGCQDLRSLHLAGCKSVTDGTLQALSKNCRNLEELGLLGCTSISDSGVIDLVNGCQNIKFLDLNKCS 213 (402)
Q Consensus 146 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 213 (402)
+..+++|++|+++++. +... .+..+..+++|+.|+++++ .++... ...+..+++|+.|+++++.
T Consensus 100 f~~l~~L~~L~L~~N~-l~~~-~~~~~~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 100 FEGLFSLQLLLLNANK-INCL-RVDAFQDLHNLNLLSLYDN-KLQTIA-KGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TTTCTTCCEEECCSSC-CCCC-CTTTTTTCTTCCEEECCSS-CCSCCC-TTTTTTCTTCCEEECCSSC
T ss_pred ccCCCCCCEEECCCCC-CCEe-CHHHcCCCCCCCEEECCCC-cCCEEC-HHHHhCCCCCCEEEeCCCC
Confidence 4678999999999874 3221 1223445899999999984 333211 1234456677777776643
No 136
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.08 E-value=5.3e-07 Score=73.51 Aligned_cols=133 Identities=17% Similarity=0.111 Sum_probs=72.0
Q ss_pred CCCCeEecCCCCCcChHHHHHHHhcCccCcEEecCCCccCChHHHHHHHHhCCCCcEEecCCCCCCchHHHHHHHhcCCC
Q 015721 124 CSLQSLDLSYCRKLTDKGLSAVAEGCQDLRSLHLAGCKSVTDGTLQALSKNCRNLEELGLLGCTSISDSGVIDLVNGCQN 203 (402)
Q Consensus 124 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 203 (402)
+.+++|+++++. +........+..+++|++|+++++. +... ....+..+++|++|+++++ .++.. ....+..+++
T Consensus 32 ~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i-~~~~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~ 106 (220)
T 2v70_A 32 QYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNK-ITDI-EEGAFEGASGVNEILLTSN-RLENV-QHKMFKGLES 106 (220)
T ss_dssp TTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSSC-CCEE-CTTTTTTCTTCCEEECCSS-CCCCC-CGGGGTTCSS
T ss_pred CCCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCCc-CCEE-CHHHhCCCCCCCEEECCCC-ccCcc-CHhHhcCCcC
Confidence 467888888765 4432111224567888888888763 2221 1122344778888888774 33321 1223566778
Q ss_pred CCEEccCCCCCCCcccHHHHHhcCCCCCEEEecCCCCCChHHHHHHHHhCCCCcEEEecCCC
Q 015721 204 IKFLDLNKCSNIGDNGISSVSKSCSSLKTLKLLDCYKVGDKSILSLAKFCKNLETLIIGGCR 265 (402)
Q Consensus 204 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 265 (402)
|++|+++++..... .+..+..+++|+.|+++++. +.... +..+..+++|+.|+++++.
T Consensus 107 L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~L~~N~-l~~~~-~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 107 LKTLMLRSNRITCV--GNDSFIGLSSVRLLSLYDNQ-ITTVA-PGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp CCEEECTTSCCCCB--CTTSSTTCTTCSEEECTTSC-CCCBC-TTTTTTCTTCCEEECCSCC
T ss_pred CCEEECCCCcCCeE--CHhHcCCCccCCEEECCCCc-CCEEC-HHHhcCCCCCCEEEecCcC
Confidence 88888877432221 11222356677777777643 22110 1222345667777776654
No 137
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.06 E-value=2.3e-06 Score=75.54 Aligned_cols=164 Identities=19% Similarity=0.105 Sum_probs=102.0
Q ss_pred CcceEEeccCCcCCCCCCCCChhhHHHHHhhCCCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCCCCcChHHHHHH
Q 015721 66 SRLVELDLSQSVSRSFYPGVTDSDLAVIADGFKSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLTDKGLSAV 145 (402)
Q Consensus 66 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 145 (402)
+.++.|+++++......... + ...+++|+.|+++++. +.......+ ..+++|++|+++++. +... .+..
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~----~---~~~l~~L~~L~L~~N~-i~~i~~~~~-~~l~~L~~L~Ls~N~-l~~~-~~~~ 107 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEW----T---PTRLTNLHSLLLSHNH-LNFISSEAF-VPVPNLRYLDLSSNH-LHTL-DEFL 107 (361)
T ss_dssp TTCSEEECCSSCCCEECTTS----S---SSCCTTCCEEECCSSC-CCEECTTTT-TTCTTCCEEECCSSC-CCEE-CTTT
T ss_pred CCCCEEECCCCCCCccChhh----h---hhcccccCEEECCCCc-CCccChhhc-cCCCCCCEEECCCCc-CCcC-CHHH
Confidence 45889999987543222221 1 1257899999999854 554332223 568999999999876 5432 1223
Q ss_pred HhcCccCcEEecCCCccCChHHHHHHHHhCCCCcEEecCCCCCCchHHHHHHH---hcCCCCCEEccCCCCCCCcccHHH
Q 015721 146 AEGCQDLRSLHLAGCKSVTDGTLQALSKNCRNLEELGLLGCTSISDSGVIDLV---NGCQNIKFLDLNKCSNIGDNGISS 222 (402)
Q Consensus 146 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~ 222 (402)
+..+++|+.|+++++.. ... .+..+..+++|+.|+++++ .+.... ...+ ..+++|+.|+++++ .+......
T Consensus 108 ~~~l~~L~~L~L~~N~i-~~~-~~~~~~~l~~L~~L~L~~N-~l~~l~-~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~- 181 (361)
T 2xot_A 108 FSDLQALEVLLLYNNHI-VVV-DRNAFEDMAQLQKLYLSQN-QISRFP-VELIKDGNKLPKLMLLDLSSN-KLKKLPLT- 181 (361)
T ss_dssp TTTCTTCCEEECCSSCC-CEE-CTTTTTTCTTCCEEECCSS-CCCSCC-GGGTC----CTTCCEEECCSS-CCCCCCHH-
T ss_pred hCCCcCCCEEECCCCcc-cEE-CHHHhCCcccCCEEECCCC-cCCeeC-HHHhcCcccCCcCCEEECCCC-CCCccCHH-
Confidence 46789999999999743 221 1223445899999999984 444311 1112 46799999999985 44443322
Q ss_pred HHhcCCC--CCEEEecCCCCCChHHH
Q 015721 223 VSKSCSS--LKTLKLLDCYKVGDKSI 246 (402)
Q Consensus 223 ~~~~~~~--L~~L~l~~~~~~~~~~~ 246 (402)
....++. ++.|.+.+++..-+..+
T Consensus 182 ~~~~l~~~~l~~l~l~~N~~~C~C~l 207 (361)
T 2xot_A 182 DLQKLPAWVKNGLYLHNNPLECDCKL 207 (361)
T ss_dssp HHHHSCHHHHTTEECCSSCEECCHHH
T ss_pred HhhhccHhhcceEEecCCCccCCcCc
Confidence 3334555 48899998765544443
No 138
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=97.99 E-value=1.8e-06 Score=72.09 Aligned_cols=40 Identities=25% Similarity=0.330 Sum_probs=35.3
Q ss_pred cccccCCHHHHHHHHccCCCcchhh-HHHHhhHHHHHhhhhc
Q 015721 5 CINEVLRDDELRSILSRLEDDKDKE-RFGLVCKRWLHLQSTE 45 (402)
Q Consensus 5 ~~~~~LP~eil~~If~~L~~~~~~~-~~~~vcr~W~~~~~~~ 45 (402)
..+..||+|++.+||.+|| .++++ ++++|||+|+.+..+.
T Consensus 49 ~~~~~LP~ell~~Il~~Lp-~~~L~~r~~~VCk~Wr~l~~~~ 89 (297)
T 2e31_A 49 EYLAELPEPLLLRVLAELP-ATELVQACRLVCLRWKELVDGA 89 (297)
T ss_dssp CCTTSSCHHHHHHHHHTSC-HHHHHHTGGGTCHHHHHHHTSH
T ss_pred cChhhCCHHHHHHHHHcCC-HHHHHHHHHHHhHHHHHHhcCh
Confidence 3556799999999999999 59999 9999999999987654
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.85 E-value=1.6e-06 Score=75.55 Aligned_cols=226 Identities=15% Similarity=0.180 Sum_probs=120.0
Q ss_pred CCCCCeEecCCCCCcChHHHHHHHhcCccCcEEecCCCccC--C--h--------------HHHHHHHHh--------CC
Q 015721 123 LCSLQSLDLSYCRKLTDKGLSAVAEGCQDLRSLHLAGCKSV--T--D--------------GTLQALSKN--------CR 176 (402)
Q Consensus 123 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~--~--------------~~~~~~~~~--------~~ 176 (402)
++++++|.+++. +....+..+...+++|+.|+++++... . . ......+.. |+
T Consensus 24 ~~~l~~L~l~g~--i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~ 101 (329)
T 3sb4_A 24 ANSITHLTLTGK--LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQ 101 (329)
T ss_dssp HHHCSEEEEEEE--ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECT
T ss_pred hCceeEEEEecc--ccHHHHHHHHHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccC
Confidence 357899999863 555556666555899999999876432 0 0 001122334 67
Q ss_pred CCcEEecCCCCCCchHHHHHHHhcCCCCCEEccCCCCC--CCcccHHHHHhcCCCCCEEEecC-----------------
Q 015721 177 NLEELGLLGCTSISDSGVIDLVNGCQNIKFLDLNKCSN--IGDNGISSVSKSCSSLKTLKLLD----------------- 237 (402)
Q Consensus 177 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--~~~~~~~~~~~~~~~L~~L~l~~----------------- 237 (402)
+|+.+++.. .+... -...+.+|++|+.+.+..... +....+ ..+.++..+....
T Consensus 102 ~L~~l~L~~--~i~~I-~~~aF~~~~~L~~l~l~~n~i~~i~~~aF----~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~ 174 (329)
T 3sb4_A 102 TLEKVILSE--KIKNI-EDAAFKGCDNLKICQIRKKTAPNLLPEAL----ADSVTAIFIPLGSSDAYRFKNRWEHFAFIE 174 (329)
T ss_dssp TCCC-CBCT--TCCEE-CTTTTTTCTTCCEEEBCCSSCCEECTTSS----CTTTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred CCcEEECCc--cccch-hHHHhhcCcccceEEcCCCCccccchhhh----cCCCceEEecCcchhhhhcccccccccccc
Confidence 777777765 22211 112456677888887766421 111111 1122222222211
Q ss_pred CCCCC-------hHHHHH-HHH---hCCCCcEEEecCCCCCChHHHHHHHHHhcCCCcEEEccCCCCCChHHHHHHHhcC
Q 015721 238 CYKVG-------DKSILS-LAK---FCKNLETLIIGGCRDISDESIKHLAASCKSSLKNLRMDWCLNISDSSLSCILSQC 306 (402)
Q Consensus 238 ~~~~~-------~~~~~~-~~~---~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~l~~~l~~~ 306 (402)
|..+. ...+.. +.. ...++..+.+.+. +....+..+...| ++|+.+++.++ .++. .-...+.+|
T Consensus 175 ~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~--l~~~~~~~l~~~~-~~L~~l~L~~n-~i~~-I~~~aF~~~ 249 (329)
T 3sb4_A 175 GEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGK--LDNADFKLIRDYM-PNLVSLDISKT-NATT-IPDFTFAQK 249 (329)
T ss_dssp SCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEEC--CCHHHHHHHHHHC-TTCCEEECTTB-CCCE-ECTTTTTTC
T ss_pred ccccceeEEecCCCcHHHHHhhcccCccccceEEEeee--ecHHHHHHHHHhc-CCCeEEECCCC-Ccce-ecHhhhhCC
Confidence 00000 000111 111 1335566666552 4445555555556 89999999875 2331 112247889
Q ss_pred CCCcEEeccCCCCCChHHHHHHHhccCCCc-EEEEeCCCCCHHHHHHHHHhCCCCCEEeccC
Q 015721 307 RNLEALDIGCCEEVTDAAFQDLGEVELSLK-VLKVNCPKVTVVGIGNVLEKCASLEYIDVRS 367 (402)
Q Consensus 307 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~ 367 (402)
++|+.|++.++ +....-. ....+++|+ .+.+.. .++..+-.. ...|++|+.+++..
T Consensus 250 ~~L~~l~l~~n--i~~I~~~-aF~~~~~L~~~l~l~~-~l~~I~~~a-F~~c~~L~~l~l~~ 306 (329)
T 3sb4_A 250 KYLLKIKLPHN--LKTIGQR-VFSNCGRLAGTLELPA-SVTAIEFGA-FMGCDNLRYVLATG 306 (329)
T ss_dssp TTCCEEECCTT--CCEECTT-TTTTCTTCCEEEEECT-TCCEECTTT-TTTCTTEEEEEECS
T ss_pred CCCCEEECCcc--cceehHH-HhhCChhccEEEEEcc-cceEEchhh-hhCCccCCEEEeCC
Confidence 99999999863 3222111 223455899 999943 454433222 35899999999865
No 140
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.80 E-value=0.00043 Score=54.26 Aligned_cols=123 Identities=15% Similarity=0.166 Sum_probs=88.1
Q ss_pred HHHHHHHHHhcCCCcEEEccCCCCCChHHHHH---HHhcCCCCcEEeccCCCCCChHHHHHHHh---ccCCCcEEEEeCC
Q 015721 270 ESIKHLAASCKSSLKNLRMDWCLNISDSSLSC---ILSQCRNLEALDIGCCEEVTDAAFQDLGE---VELSLKVLKVNCP 343 (402)
Q Consensus 270 ~~~~~l~~~~~~~L~~L~l~~~~~~~~~~l~~---~l~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~ 343 (402)
..+..+.... +.|++|+++++..+.+++... .+..-+.|+.|++++| .+++.+...++. ....|++|+|+.|
T Consensus 31 ~~l~~ll~~n-~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N 108 (197)
T 1pgv_A 31 SCINRLREDD-TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESN 108 (197)
T ss_dssp HHHHHHHTTC-SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHHHhcC-CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCC
Confidence 3455554443 789999998755777776544 4556678999999984 588887766654 3448999999999
Q ss_pred CCCHHHHHHHHHh---CCCCCEEeccCCC--CCCHhHHHh---hccCCCCcceEecccc
Q 015721 344 KVTVVGIGNVLEK---CASLEYIDVRSCP--HVTQASCEE---AGLQFPQCCKVNFAGC 394 (402)
Q Consensus 344 ~~~~~~l~~~~~~---~~~L~~L~l~~c~--~~~~~~~~~---~~~~~p~l~~l~~~~~ 394 (402)
.+++.+...+.+. -+.|+.|+++++. .+.+++... .-..-+.+..++++.+
T Consensus 109 ~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 109 FLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp BCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred cCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 9999988766554 4579999998753 577765433 3345567888887644
No 141
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.75 E-value=1.1e-05 Score=64.19 Aligned_cols=59 Identities=20% Similarity=0.193 Sum_probs=27.6
Q ss_pred CCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCCCCcChHHHHHHHhcCccCcEEecCCC
Q 015721 99 SLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLTDKGLSAVAEGCQDLRSLHLAGC 160 (402)
Q Consensus 99 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 160 (402)
+++.|+++++. +...........+++|++|+++++. +... .+..+..+++|++|+++++
T Consensus 30 ~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~-~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 30 HTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQ-LTGI-EPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSC-CCCB-CTTTTTTCTTCCEEECCSC
T ss_pred CCCEEECCCCc-CCccCCccccccCCCCCEEECCCCC-CCCc-CHhHcCCcccCCEEECCCC
Confidence 66666666643 3322111112345666666666544 3221 1122334555666666554
No 142
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.72 E-value=6.4e-06 Score=65.47 Aligned_cols=117 Identities=15% Similarity=0.163 Sum_probs=75.3
Q ss_pred CCCCcEEEecCCCCCChHHHHHHHHHhcCCCcEEEccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhcc
Q 015721 253 CKNLETLIIGGCRDISDESIKHLAASCKSSLKNLRMDWCLNISDSSLSCILSQCRNLEALDIGCCEEVTDAAFQDLGEVE 332 (402)
Q Consensus 253 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 332 (402)
.++|+.|+++++. ++... ..+ .. .++|+.|+++++ .++. .....+..+++|+.|+++++. ++......+ ...
T Consensus 30 ~~~l~~L~L~~n~-i~~ip-~~~-~~-l~~L~~L~Ls~N-~i~~-i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f-~~l 101 (193)
T 2wfh_A 30 PRDVTELYLDGNQ-FTLVP-KEL-SN-YKHLTLIDLSNN-RIST-LSNQSFSNMTQLLTLILSYNR-LRCIPPRTF-DGL 101 (193)
T ss_dssp CTTCCEEECCSSC-CCSCC-GGG-GG-CTTCCEEECCSS-CCCC-CCTTTTTTCTTCCEEECCSSC-CCBCCTTTT-TTC
T ss_pred CCCCCEEECCCCc-CchhH-HHh-hc-ccCCCEEECCCC-cCCE-eCHhHccCCCCCCEEECCCCc-cCEeCHHHh-CCC
Confidence 3689999998753 33111 111 22 289999999987 4442 112336789999999999854 433222222 334
Q ss_pred CCCcEEEEeCCCCCHHHHHHHHHhCCCCCEEeccCCCCCCHhHHHh
Q 015721 333 LSLKVLKVNCPKVTVVGIGNVLEKCASLEYIDVRSCPHVTQASCEE 378 (402)
Q Consensus 333 ~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~ 378 (402)
++|+.|+++.|.++.... ..+..+++|+.|++++++...+-.+.+
T Consensus 102 ~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~~~C~c~l~~ 146 (193)
T 2wfh_A 102 KSLRLLSLHGNDISVVPE-GAFNDLSALSHLAIGANPLYCDCNMQW 146 (193)
T ss_dssp TTCCEEECCSSCCCBCCT-TTTTTCTTCCEEECCSSCEECSGGGHH
T ss_pred CCCCEEECCCCCCCeeCh-hhhhcCccccEEEeCCCCeecCCcCHH
Confidence 599999997788875332 234578999999999987665444333
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.71 E-value=3.6e-06 Score=73.27 Aligned_cols=76 Identities=18% Similarity=0.191 Sum_probs=37.7
Q ss_pred hHHHHHHHhcCcceEEeccCCcCCCC--CCCCChh---------h-HHHHHhh--------CCCCCEEEccCCCCCChhH
Q 015721 56 HMLRKIAARFSRLVELDLSQSVSRSF--YPGVTDS---------D-LAVIADG--------FKSLKLLNLQNCKGITDAG 115 (402)
Q Consensus 56 ~~~~~~~~~~~~l~~L~l~~~~~~~~--~~~~~~~---------~-~~~~~~~--------~~~L~~L~l~~~~~~~~~~ 115 (402)
..+..+...+++|+.|+++++....+ ....... . -...+.. |++|+.+.+.. .+...+
T Consensus 39 ~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~ 116 (329)
T 3sb4_A 39 EDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE--KIKNIE 116 (329)
T ss_dssp HHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT--TCCEEC
T ss_pred HHHHHHHHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc--cccchh
Confidence 33444444488899999987754311 0000000 0 0011234 67777777765 233322
Q ss_pred HHHHHhcCCCCCeEecCCC
Q 015721 116 IASIGSGLCSLQSLDLSYC 134 (402)
Q Consensus 116 ~~~~~~~~~~L~~L~l~~~ 134 (402)
-.++ ..|++|+++++..+
T Consensus 117 ~~aF-~~~~~L~~l~l~~n 134 (329)
T 3sb4_A 117 DAAF-KGCDNLKICQIRKK 134 (329)
T ss_dssp TTTT-TTCTTCCEEEBCCS
T ss_pred HHHh-hcCcccceEEcCCC
Confidence 2222 45677777777654
No 144
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.58 E-value=2.8e-05 Score=60.81 Aligned_cols=35 Identities=26% Similarity=0.220 Sum_probs=15.8
Q ss_pred CCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCC
Q 015721 98 KSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYC 134 (402)
Q Consensus 98 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 134 (402)
++|++|+++++. +..... .....+++|++|+++++
T Consensus 28 ~~l~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n 62 (177)
T 2o6r_A 28 SSATRLELESNK-LQSLPH-GVFDKLTQLTKLSLSQN 62 (177)
T ss_dssp TTCSEEECCSSC-CCCCCT-TTTTTCTTCSEEECCSS
T ss_pred CCCcEEEeCCCc-ccEeCH-HHhcCcccccEEECCCC
Confidence 456666666532 222111 11134455666665554
No 145
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.56 E-value=8e-06 Score=78.84 Aligned_cols=107 Identities=21% Similarity=0.168 Sum_probs=56.9
Q ss_pred hcCCCCCeEecCCCCCcChHHHHHHHhcCccCcEEecCCCccCChHHHHHHHHhCCCCcEEecCCCCCCchHHHHHHHhc
Q 015721 121 SGLCSLQSLDLSYCRKLTDKGLSAVAEGCQDLRSLHLAGCKSVTDGTLQALSKNCRNLEELGLLGCTSISDSGVIDLVNG 200 (402)
Q Consensus 121 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 200 (402)
..+++|+.|+++++. +.. ++.....+++|++|+++++. +. .++..+..+++|+.|+++++ .++. ++..+..
T Consensus 221 ~~l~~L~~L~Ls~n~-l~~--l~~~~~~l~~L~~L~Ls~N~-l~--~lp~~~~~l~~L~~L~Ls~N-~l~~--lp~~~~~ 291 (727)
T 4b8c_D 221 YDDQLWHALDLSNLQ-IFN--ISANIFKYDFLTRLYLNGNS-LT--ELPAEIKNLSNLRVLDLSHN-RLTS--LPAELGS 291 (727)
T ss_dssp -CCCCCCEEECTTSC-CSC--CCGGGGGCCSCSCCBCTTSC-CS--CCCGGGGGGTTCCEEECTTS-CCSS--CCSSGGG
T ss_pred ccCCCCcEEECCCCC-CCC--CChhhcCCCCCCEEEeeCCc-Cc--ccChhhhCCCCCCEEeCcCC-cCCc--cChhhcC
Confidence 455667777776654 321 22222356777777777653 22 12222344677777777763 3332 3334556
Q ss_pred CCCCCEEccCCCCCCCcccHHHHHhcCCCCCEEEecCCC
Q 015721 201 CQNIKFLDLNKCSNIGDNGISSVSKSCSSLKTLKLLDCY 239 (402)
Q Consensus 201 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 239 (402)
+++|++|+++++. +.. ++..+..+++|+.|+++++.
T Consensus 292 l~~L~~L~L~~N~-l~~--lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 292 CFQLKYFYFFDNM-VTT--LPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp GTTCSEEECCSSC-CCC--CCSSTTSCTTCCCEECTTSC
T ss_pred CCCCCEEECCCCC-CCc--cChhhhcCCCccEEeCCCCc
Confidence 6777777776643 222 22224456677777777653
No 146
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.55 E-value=9.6e-06 Score=64.43 Aligned_cols=83 Identities=18% Similarity=0.117 Sum_probs=38.0
Q ss_pred CCCCeEecCCCCCcChHHHHHHHhcCccCcEEecCCCccCChHHHHHHHHhCCCCcEEecCCCCCCchHHHHHHHhcCCC
Q 015721 124 CSLQSLDLSYCRKLTDKGLSAVAEGCQDLRSLHLAGCKSVTDGTLQALSKNCRNLEELGLLGCTSISDSGVIDLVNGCQN 203 (402)
Q Consensus 124 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 203 (402)
++|++|+++++. +........+..+++|++|+++++. +... .+..+..+++|++|+++++ .++.. ....+..+++
T Consensus 29 ~~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~-~~~~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~ 103 (192)
T 1w8a_A 29 LHTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQ-LTGI-EPNAFEGASHIQELQLGEN-KIKEI-SNKMFLGLHQ 103 (192)
T ss_dssp TTCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSC-CCCB-CTTTTTTCTTCCEEECCSC-CCCEE-CSSSSTTCTT
T ss_pred CCCCEEECCCCc-CCccCCccccccCCCCCEEECCCCC-CCCc-CHhHcCCcccCCEEECCCC-cCCcc-CHHHhcCCCC
Confidence 367777777654 3321111123456667777776653 2211 1122233566666666653 22221 0112334455
Q ss_pred CCEEccCC
Q 015721 204 IKFLDLNK 211 (402)
Q Consensus 204 L~~L~l~~ 211 (402)
|++|++++
T Consensus 104 L~~L~L~~ 111 (192)
T 1w8a_A 104 LKTLNLYD 111 (192)
T ss_dssp CCEEECCS
T ss_pred CCEEECCC
Confidence 55555554
No 147
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.54 E-value=2.5e-05 Score=62.06 Aligned_cols=13 Identities=23% Similarity=0.662 Sum_probs=6.4
Q ss_pred hcCCCCCEEccCC
Q 015721 199 NGCQNIKFLDLNK 211 (402)
Q Consensus 199 ~~~~~L~~L~l~~ 211 (402)
..+++|+.|++++
T Consensus 99 ~~l~~L~~L~L~~ 111 (193)
T 2wfh_A 99 DGLKSLRLLSLHG 111 (193)
T ss_dssp TTCTTCCEEECCS
T ss_pred CCCCCCCEEECCC
Confidence 3445555555554
No 148
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.52 E-value=2.3e-05 Score=71.63 Aligned_cols=36 Identities=17% Similarity=0.070 Sum_probs=33.0
Q ss_pred ccCCHHHHHHHHccCCCcchhhHHHHhhHHHHHhhhh
Q 015721 8 EVLRDDELRSILSRLEDDKDKERFGLVCKRWLHLQST 44 (402)
Q Consensus 8 ~~LP~eil~~If~~L~~~~~~~~~~~vcr~W~~~~~~ 44 (402)
..||+|++.+||+||+ .++++++++|||+|++++..
T Consensus 16 ~~lp~~~~~~i~~~l~-~~~l~~~~~v~~~w~~~~~~ 51 (464)
T 3v7d_B 16 TSLPFEISLKIFNYLQ-FEDIINSLGVSQNWNKIIRK 51 (464)
T ss_dssp HHSCHHHHHHHHTTSC-HHHHHHHHTTCHHHHHHHTT
T ss_pred HHCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHcC
Confidence 4599999999999999 59999999999999998765
No 149
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.38 E-value=4.3e-05 Score=69.22 Aligned_cols=38 Identities=32% Similarity=0.426 Sum_probs=33.9
Q ss_pred ccCCHH----HHHHHHccCCCcchhhHHHHhhHHHHHhhhhcc
Q 015721 8 EVLRDD----ELRSILSRLEDDKDKERFGLVCKRWLHLQSTER 46 (402)
Q Consensus 8 ~~LP~e----il~~If~~L~~~~~~~~~~~vcr~W~~~~~~~~ 46 (402)
+.||+| |+.+||+||+ .+++.++++|||+|+.++.+..
T Consensus 12 ~~lp~e~~~~~~~~i~~~l~-~~~l~~~~~v~~~w~~~~~~~~ 53 (435)
T 1p22_A 12 TALPARGLDHIAENILSYLD-AKSLCAAELVCKEWYRVTSDGM 53 (435)
T ss_dssp HHTGGGTCHHHHHHHHTTCC-HHHHHHHHHHCHHHHHHHHHTT
T ss_pred HHCCcchHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhcChH
Confidence 459999 9999999999 5999999999999999876543
No 150
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.35 E-value=3.8e-05 Score=60.00 Aligned_cols=112 Identities=13% Similarity=0.125 Sum_probs=71.2
Q ss_pred CCCCcEEEecCCCCCChHHHHHHHHHhcCCCcEEEccCCCCCChHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhcc
Q 015721 253 CKNLETLIIGGCRDISDESIKHLAASCKSSLKNLRMDWCLNISDSSLSCILSQCRNLEALDIGCCEEVTDAAFQDLGEVE 332 (402)
Q Consensus 253 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 332 (402)
.++|+.|+++++. +.......+ .. .++|++|+++++ .++. .....+..+++|+.|+++++. ++... .......
T Consensus 27 ~~~l~~L~l~~n~-l~~~~~~~~-~~-l~~L~~L~l~~n-~l~~-~~~~~~~~l~~L~~L~l~~N~-l~~~~-~~~~~~l 99 (177)
T 2o6r_A 27 PSSATRLELESNK-LQSLPHGVF-DK-LTQLTKLSLSQN-QIQS-LPDGVFDKLTKLTILYLHENK-LQSLP-NGVFDKL 99 (177)
T ss_dssp CTTCSEEECCSSC-CCCCCTTTT-TT-CTTCSEEECCSS-CCCC-CCTTTTTTCTTCCEEECCSSC-CCCCC-TTTTTTC
T ss_pred CCCCcEEEeCCCc-ccEeCHHHh-cC-cccccEEECCCC-cceE-eChhHccCCCccCEEECCCCC-ccccC-HHHhhCC
Confidence 4689999998853 322111111 12 289999999987 4441 112235788999999999854 43221 1122344
Q ss_pred CCCcEEEEeCCCCCHHHHHHHHHhCCCCCEEeccCCCCCC
Q 015721 333 LSLKVLKVNCPKVTVVGIGNVLEKCASLEYIDVRSCPHVT 372 (402)
Q Consensus 333 ~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~ 372 (402)
++|+.|+++.|.++.... ..+..+++|+.|++++++...
T Consensus 100 ~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 100 TQLKELALDTNQLKSVPD-GIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp TTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCBCC
T ss_pred cccCEEECcCCcceEeCH-HHhcCCcccCEEEecCCCeec
Confidence 599999997777764322 234578999999999987554
No 151
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.29 E-value=8.1e-05 Score=67.57 Aligned_cols=38 Identities=26% Similarity=0.340 Sum_probs=33.7
Q ss_pred cccCCHHHHHHHHccCCCcchhhHHHHhhHHHHHhhhhc
Q 015721 7 NEVLRDDELRSILSRLEDDKDKERFGLVCKRWLHLQSTE 45 (402)
Q Consensus 7 ~~~LP~eil~~If~~L~~~~~~~~~~~vcr~W~~~~~~~ 45 (402)
++.||+|++.+||+||+ .+++.++++|||+|+.++...
T Consensus 19 ~~~lp~e~~~~i~~~l~-~~~l~~~~~v~~~~~~~~~~~ 56 (445)
T 2ovr_B 19 ISLLPKELALYVLSFLE-PKDLLQAAQTCRYWRILAEDN 56 (445)
T ss_dssp TTSSCHHHHHHHHTTSC-HHHHHHHTTSCHHHHHHHTCS
T ss_pred hHHCCHHHHHHHHHhCC-HHHHHHHHHHhHHHHhhcCch
Confidence 44699999999999999 599999999999999986543
No 152
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.25 E-value=3.2e-05 Score=74.65 Aligned_cols=109 Identities=21% Similarity=0.159 Sum_probs=73.0
Q ss_pred HhhCCCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCCCCcChHHHHHHHhcCccCcEEecCCCccCChHHHHHHHH
Q 015721 94 ADGFKSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLTDKGLSAVAEGCQDLRSLHLAGCKSVTDGTLQALSK 173 (402)
Q Consensus 94 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 173 (402)
...+++|+.|+++++. +... ..-...+++|++|+|+++. +. .++..+..+++|+.|+++++. +.. ++..+.
T Consensus 220 ~~~l~~L~~L~Ls~n~-l~~l--~~~~~~l~~L~~L~Ls~N~-l~--~lp~~~~~l~~L~~L~Ls~N~-l~~--lp~~~~ 290 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQ-IFNI--SANIFKYDFLTRLYLNGNS-LT--ELPAEIKNLSNLRVLDLSHNR-LTS--LPAELG 290 (727)
T ss_dssp --CCCCCCEEECTTSC-CSCC--CGGGGGCCSCSCCBCTTSC-CS--CCCGGGGGGTTCCEEECTTSC-CSS--CCSSGG
T ss_pred hccCCCCcEEECCCCC-CCCC--ChhhcCCCCCCEEEeeCCc-Cc--ccChhhhCCCCCCEEeCcCCc-CCc--cChhhc
Confidence 3457889999998865 3321 1112368899999998875 54 234445678999999999874 332 233345
Q ss_pred hCCCCcEEecCCCCCCchHHHHHHHhcCCCCCEEccCCCCC
Q 015721 174 NCRNLEELGLLGCTSISDSGVIDLVNGCQNIKFLDLNKCSN 214 (402)
Q Consensus 174 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 214 (402)
.+++|++|+++++ .++. ++..+..+++|+.|+++++..
T Consensus 291 ~l~~L~~L~L~~N-~l~~--lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 291 SCFQLKYFYFFDN-MVTT--LPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp GGTTCSEEECCSS-CCCC--CCSSTTSCTTCCCEECTTSCC
T ss_pred CCCCCCEEECCCC-CCCc--cChhhhcCCCccEEeCCCCcc
Confidence 5889999999884 4442 344467789999999988654
No 153
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.16 E-value=0.0011 Score=55.08 Aligned_cols=39 Identities=28% Similarity=0.390 Sum_probs=16.0
Q ss_pred cCCCCCeEecCCCCCcChHHHHHHHhcCccCcEEecCCC
Q 015721 122 GLCSLQSLDLSYCRKLTDKGLSAVAEGCQDLRSLHLAGC 160 (402)
Q Consensus 122 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 160 (402)
.+++|++|+++++.--...+++.....+++|+.|+++++
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N 206 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN 206 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC
Confidence 344555555544431111122233334455555555443
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.15 E-value=0.00089 Score=55.55 Aligned_cols=14 Identities=21% Similarity=0.446 Sum_probs=7.1
Q ss_pred HhcCCCCcEEeccC
Q 015721 303 LSQCRNLEALDIGC 316 (402)
Q Consensus 303 l~~~~~L~~L~l~~ 316 (402)
+..+++|+.|++++
T Consensus 192 ~~~l~~L~~L~Ls~ 205 (267)
T 3rw6_A 192 VQKAPNLKILNLSG 205 (267)
T ss_dssp HHHSTTCCEEECTT
T ss_pred HhhCCCCCEEECCC
Confidence 34455555555554
No 155
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.94 E-value=0.00035 Score=54.01 Aligned_cols=82 Identities=23% Similarity=0.251 Sum_probs=41.4
Q ss_pred CCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCCCCcChHHHHHHHhcCccCcEEecCCCccCChHHHHHHHHhCCC
Q 015721 98 KSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLTDKGLSAVAEGCQDLRSLHLAGCKSVTDGTLQALSKNCRN 177 (402)
Q Consensus 98 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 177 (402)
++|+.|+++++. +.......+ ..+++|++|+++++. +... .+..+..+++|++|+++++. +.. .....+..+++
T Consensus 30 ~~l~~L~L~~N~-i~~~~~~~~-~~l~~L~~L~Ls~N~-l~~l-~~~~f~~l~~L~~L~L~~N~-l~~-~~~~~~~~l~~ 103 (170)
T 3g39_A 30 TTTQVLYLYDNQ-ITKLEPGVF-DRLTQLTRLDLDNNQ-LTVL-PAGVFDKLTQLTQLSLNDNQ-LKS-IPRGAFDNLKS 103 (170)
T ss_dssp TTCSEEECCSSC-CCCCCTTTT-TTCTTCSEEECCSSC-CCCC-CTTTTTTCTTCCEEECCSSC-CCC-CCTTTTTTCTT
T ss_pred CCCcEEEcCCCc-CCccChhhh-cCcccCCEEECCCCC-cCcc-ChhhccCCCCCCEEECCCCc-cCE-eCHHHhcCCCC
Confidence 567777777643 333221122 356777777777654 3321 11223456667777776653 221 11122333566
Q ss_pred CcEEecCC
Q 015721 178 LEELGLLG 185 (402)
Q Consensus 178 L~~L~l~~ 185 (402)
|+.|++++
T Consensus 104 L~~L~L~~ 111 (170)
T 3g39_A 104 LTHIWLLN 111 (170)
T ss_dssp CCEEECCS
T ss_pred CCEEEeCC
Confidence 66666665
No 156
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.77 E-value=0.00022 Score=55.20 Aligned_cols=34 Identities=15% Similarity=0.227 Sum_probs=15.9
Q ss_pred CCCcEEEccCCCCCChHHHHHHHhcCCCCcEEeccC
Q 015721 281 SSLKNLRMDWCLNISDSSLSCILSQCRNLEALDIGC 316 (402)
Q Consensus 281 ~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~ 316 (402)
++|++|+++++ .++. .....+..+++|+.|++++
T Consensus 54 ~~L~~L~Ls~N-~l~~-l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 54 TQLTRLDLDNN-QLTV-LPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTCSEEECCSS-CCCC-CCTTTTTTCTTCCEEECCS
T ss_pred ccCCEEECCCC-CcCc-cChhhccCCCCCCEEECCC
Confidence 55666666554 2321 0111234555556665555
No 157
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.76 E-value=0.0007 Score=52.54 Aligned_cols=59 Identities=25% Similarity=0.214 Sum_probs=27.8
Q ss_pred CCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCCCCcChHHHHHHHhcCccCcEEecCCC
Q 015721 98 KSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCRKLTDKGLSAVAEGCQDLRSLHLAGC 160 (402)
Q Consensus 98 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 160 (402)
++|+.|+++++. +...... ....+++|++|+++++. +... .+..+..+++|+.|+++++
T Consensus 33 ~~L~~L~Ls~N~-l~~~~~~-~~~~l~~L~~L~Ls~N~-l~~i-~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 33 TDKQRLWLNNNQ-ITKLEPG-VFDHLVNLQQLYFNSNK-LTAI-PTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp TTCSEEECCSSC-CCCCCTT-TTTTCTTCCEEECCSSC-CCCC-CTTTTTTCTTCCEEECCSS
T ss_pred CCCcEEEeCCCC-ccccCHH-HhcCCcCCCEEECCCCC-CCcc-ChhHhCCcchhhEEECCCC
Confidence 466677766643 3322111 12345666666666653 3321 1112234555666666554
No 158
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.60 E-value=0.00036 Score=54.18 Aligned_cols=35 Identities=20% Similarity=0.243 Sum_probs=16.1
Q ss_pred CCcEEEEeCCCCCHHHHHHHHHhCCCCCEEeccCCC
Q 015721 334 SLKVLKVNCPKVTVVGIGNVLEKCASLEYIDVRSCP 369 (402)
Q Consensus 334 ~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~ 369 (402)
+|+.|+++.|.++.... ..+..+++|+.|++++++
T Consensus 82 ~L~~L~L~~N~l~~l~~-~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 82 QLTQLDLNDNHLKSIPR-GAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp TCCEEECCSSCCCCCCT-TTTTTCTTCSEEECCSSC
T ss_pred hhhEEECCCCccceeCH-HHhccccCCCEEEeCCCC
Confidence 55555554444443211 112345556666665544
No 159
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=95.98 E-value=0.00029 Score=62.79 Aligned_cols=256 Identities=18% Similarity=0.206 Sum_probs=137.5
Q ss_pred cCcceEEeccCCcCCCCCCCCChhhHHHHHhhCCCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCC-CCcChHHHH
Q 015721 65 FSRLVELDLSQSVSRSFYPGVTDSDLAVIADGFKSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYC-RKLTDKGLS 143 (402)
Q Consensus 65 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~ 143 (402)
+..++.+.+... ...+....+ ..+ +|+.+.+... +...+-.++. . .+|+++.+... ..+...
T Consensus 112 ~~~l~~i~ip~~-----i~~I~~~aF----~~~-~L~~i~l~~~--i~~I~~~aF~-~-~~L~~i~lp~~l~~I~~~--- 174 (401)
T 4fdw_A 112 LKGYNEIILPNS-----VKSIPKDAF----RNS-QIAKVVLNEG--LKSIGDMAFF-N-STVQEIVFPSTLEQLKED--- 174 (401)
T ss_dssp CSSCSEEECCTT-----CCEECTTTT----TTC-CCSEEECCTT--CCEECTTTTT-T-CCCCEEECCTTCCEECSS---
T ss_pred cCCccEEEECCc-----cCEehHhhc----ccC-CccEEEeCCC--ccEECHHhcC-C-CCceEEEeCCCccEehHH---
Confidence 355666666543 223333333 233 6888888652 3333333332 2 36888888652 112222
Q ss_pred HHHhcCccCcEEecCCCc--cCChHHHHHHHHhCCCCcEEecCCCCCCchHHHHHHHhcCCCCCEEccCCC-CCCCcccH
Q 015721 144 AVAEGCQDLRSLHLAGCK--SVTDGTLQALSKNCRNLEELGLLGCTSISDSGVIDLVNGCQNIKFLDLNKC-SNIGDNGI 220 (402)
Q Consensus 144 ~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~ 220 (402)
.+.+|++|+.+++.++. .+.... +. +.+|+.+.+... +... -...+.+|++|+.+.+... ..+....+
T Consensus 175 -aF~~c~~L~~l~l~~n~l~~I~~~a----F~-~~~L~~l~lp~~--l~~I-~~~aF~~~~~L~~l~l~~~l~~I~~~aF 245 (401)
T 4fdw_A 175 -IFYYCYNLKKADLSKTKITKLPAST----FV-YAGIEEVLLPVT--LKEI-GSQAFLKTSQLKTIEIPENVSTIGQEAF 245 (401)
T ss_dssp -TTTTCTTCCEEECTTSCCSEECTTT----TT-TCCCSEEECCTT--CCEE-CTTTTTTCTTCCCEECCTTCCEECTTTT
T ss_pred -HhhCcccCCeeecCCCcceEechhh----Ee-ecccCEEEeCCc--hhee-hhhHhhCCCCCCEEecCCCccCcccccc
Confidence 23568899999997532 122211 12 578999888652 2211 1134667889999988642 12222222
Q ss_pred HHHHhcCCCCCEEEecCCCCCChHHHHHHHHhCCCCcEEEecCCCC-------CChHHHHHHHHHhcCCCcEEEccCCCC
Q 015721 221 SSVSKSCSSLKTLKLLDCYKVGDKSILSLAKFCKNLETLIIGGCRD-------ISDESIKHLAASCKSSLKNLRMDWCLN 293 (402)
Q Consensus 221 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-------~~~~~~~~l~~~~~~~L~~L~l~~~~~ 293 (402)
. . .+|+.+.+... +...+ ...+..|++|+.+.+.+... +.+..+ ..| ++|+.+.+...
T Consensus 246 ~----~-~~L~~i~lp~~--i~~I~-~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF----~~c-~~L~~l~l~~~-- 310 (401)
T 4fdw_A 246 R----E-SGITTVKLPNG--VTNIA-SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCL----EGC-PKLARFEIPES-- 310 (401)
T ss_dssp T----T-CCCSEEEEETT--CCEEC-TTTTTTCTTCCEEEEESSCCCCCTTCEECTTTT----TTC-TTCCEECCCTT--
T ss_pred c----c-CCccEEEeCCC--ccEEC-hhHhhCCCCCCEEEeCCccccCCcccEECHHHh----hCC-ccCCeEEeCCc--
Confidence 1 2 67999988642 21111 12344588999999866432 222222 233 78999988642
Q ss_pred CChHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhccCCCcEEEEeCCCCCHHHHHHHHHhCC-CCCEEeccC
Q 015721 294 ISDSSLSCILSQCRNLEALDIGCCEEVTDAAFQDLGEVELSLKVLKVNCPKVTVVGIGNVLEKCA-SLEYIDVRS 367 (402)
Q Consensus 294 ~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~-~L~~L~l~~ 367 (402)
+..-+ ...+.+|++|+.+.+... ++...... ...+ +|+.+.+..+......-. ....++ .++.|.+..
T Consensus 311 i~~I~-~~aF~~c~~L~~l~lp~~--l~~I~~~a-F~~~-~L~~l~l~~n~~~~l~~~-~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 311 IRILG-QGLLGGNRKVTQLTIPAN--VTQINFSA-FNNT-GIKEVKVEGTTPPQVFEK-VWYGFPDDITVIRVPA 379 (401)
T ss_dssp CCEEC-TTTTTTCCSCCEEEECTT--CCEECTTS-SSSS-CCCEEEECCSSCCBCCCS-SCCCSCTTCCEEEECG
T ss_pred eEEEh-hhhhcCCCCccEEEECcc--ccEEcHHh-CCCC-CCCEEEEcCCCCcccccc-cccCCCCCccEEEeCH
Confidence 22101 123778999999999642 22211111 2345 899999955544332111 122453 678887754
No 160
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=95.06 E-value=0.0083 Score=52.26 Aligned_cols=61 Identities=18% Similarity=0.092 Sum_probs=30.1
Q ss_pred hcCCCCCeEecCC-CCCcChHHHHHHHhcCccCcEEecCCCccCChHHHHHHHHhCCCCcEEecCC
Q 015721 121 SGLCSLQSLDLSY-CRKLTDKGLSAVAEGCQDLRSLHLAGCKSVTDGTLQALSKNCRNLEELGLLG 185 (402)
Q Consensus 121 ~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 185 (402)
..+++|++|+|++ +. +... .+..+..+++|+.|+|+++. +.. ..+..+..+++|+.|++++
T Consensus 28 ~~~~~L~~L~l~~~n~-l~~~-~~~~~~~l~~L~~L~l~~N~-l~~-~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 28 PGAENLTELYIENQQH-LQHL-ELRDLRGLGELRNLTIVKSG-LRF-VAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CSCSCCSEEECCSCSS-CCEE-CGGGSCSCCCCSEEECCSSC-CCE-ECTTGGGSCSCCCEEECCS
T ss_pred CCCCCeeEEEccCCCC-CCCc-ChhHhccccCCCEEECCCCc-cce-eCHHHhcCCcCCCEEeCCC
Confidence 4556677777764 33 3321 11223456666666666642 222 1122233466666666665
No 161
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=94.87 E-value=0.0047 Score=53.85 Aligned_cols=92 Identities=13% Similarity=0.035 Sum_probs=59.1
Q ss_pred CCCcEEEccC-CCCCChHHHHHHHhcCCCCcEEeccCCCCCChHHHHHHHhccCCCcEEEEeCCCCCHHHHHHHHHhCCC
Q 015721 281 SSLKNLRMDW-CLNISDSSLSCILSQCRNLEALDIGCCEEVTDAAFQDLGEVELSLKVLKVNCPKVTVVGIGNVLEKCAS 359 (402)
Q Consensus 281 ~~L~~L~l~~-~~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~ 359 (402)
.+|++|+|++ + .++. .....+..+++|+.|+++++. ++..... ....+++|+.|+|+.|.++.... ..+..+ .
T Consensus 31 ~~L~~L~l~~~n-~l~~-~~~~~~~~l~~L~~L~l~~N~-l~~~~~~-~~~~l~~L~~L~l~~N~l~~~~~-~~~~~~-~ 104 (347)
T 2ifg_A 31 ENLTELYIENQQ-HLQH-LELRDLRGLGELRNLTIVKSG-LRFVAPD-AFHFTPRLSRLNLSFNALESLSW-KTVQGL-S 104 (347)
T ss_dssp SCCSEEECCSCS-SCCE-ECGGGSCSCCCCSEEECCSSC-CCEECTT-GGGSCSCCCEEECCSSCCSCCCS-TTTCSC-C
T ss_pred CCeeEEEccCCC-CCCC-cChhHhccccCCCEEECCCCc-cceeCHH-HhcCCcCCCEEeCCCCccceeCH-HHcccC-C
Confidence 6799999986 5 4442 112346789999999999854 5432222 22445699999998888875322 122233 3
Q ss_pred CCEEeccCCCCCCHhHHHh
Q 015721 360 LEYIDVRSCPHVTQASCEE 378 (402)
Q Consensus 360 L~~L~l~~c~~~~~~~~~~ 378 (402)
|+.|++.+++...+-.+.+
T Consensus 105 L~~l~l~~N~~~c~c~l~~ 123 (347)
T 2ifg_A 105 LQELVLSGNPLHCSCALRW 123 (347)
T ss_dssp CCEEECCSSCCCCCGGGHH
T ss_pred ceEEEeeCCCccCCCccHH
Confidence 9999999877654443333
No 162
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=94.71 E-value=0.006 Score=54.27 Aligned_cols=217 Identities=9% Similarity=0.125 Sum_probs=117.9
Q ss_pred cceEEeccCCcCCCCCCCCChhhHHHHHhhCCCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCC-CCcChHHHHHH
Q 015721 67 RLVELDLSQSVSRSFYPGVTDSDLAVIADGFKSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYC-RKLTDKGLSAV 145 (402)
Q Consensus 67 ~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~ 145 (402)
+|+.+.+... ...+....+ ..|++|+.+++.... +....-..+ .+.+|+++.+... ..+.. ..
T Consensus 158 ~L~~i~lp~~-----l~~I~~~aF----~~c~~L~~l~l~~n~-l~~I~~~aF--~~~~L~~l~lp~~l~~I~~----~a 221 (401)
T 4fdw_A 158 TVQEIVFPST-----LEQLKEDIF----YYCYNLKKADLSKTK-ITKLPASTF--VYAGIEEVLLPVTLKEIGS----QA 221 (401)
T ss_dssp CCCEEECCTT-----CCEECSSTT----TTCTTCCEEECTTSC-CSEECTTTT--TTCCCSEEECCTTCCEECT----TT
T ss_pred CceEEEeCCC-----ccEehHHHh----hCcccCCeeecCCCc-ceEechhhE--eecccCEEEeCCchheehh----hH
Confidence 5888888652 223333322 468999999998632 333222223 2578999998643 11222 22
Q ss_pred HhcCccCcEEecCCCccCChHHHHHHHHhCCCCcEEecCCCCCCchHHHHHHHhcCCCCCEEccCCCCCCCc---ccHHH
Q 015721 146 AEGCQDLRSLHLAGCKSVTDGTLQALSKNCRNLEELGLLGCTSISDSGVIDLVNGCQNIKFLDLNKCSNIGD---NGISS 222 (402)
Q Consensus 146 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~ 222 (402)
+.+|++|+.+.+... +....-.. +.. .+|+.+.+... +... -...+.+|++|+.+.+.+...... ..-..
T Consensus 222 F~~~~~L~~l~l~~~--l~~I~~~a-F~~-~~L~~i~lp~~--i~~I-~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~ 294 (401)
T 4fdw_A 222 FLKTSQLKTIEIPEN--VSTIGQEA-FRE-SGITTVKLPNG--VTNI-ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPY 294 (401)
T ss_dssp TTTCTTCCCEECCTT--CCEECTTT-TTT-CCCSEEEEETT--CCEE-CTTTTTTCTTCCEEEEESSCCCCCTTCEECTT
T ss_pred hhCCCCCCEEecCCC--ccCccccc-ccc-CCccEEEeCCC--ccEE-ChhHhhCCCCCCEEEeCCccccCCcccEECHH
Confidence 356889999999752 22211111 222 57888888642 2211 023467889999998865322100 01123
Q ss_pred HHhcCCCCCEEEecCCCCCChHHHHHHHHhCCCCcEEEecCCCCCChHHHHHHHHHhcCCCcEEEccCCCCCChHHHHHH
Q 015721 223 VSKSCSSLKTLKLLDCYKVGDKSILSLAKFCKNLETLIIGGCRDISDESIKHLAASCKSSLKNLRMDWCLNISDSSLSCI 302 (402)
Q Consensus 223 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~l~~~ 302 (402)
.+..|++|+.+.+... +...+ ...+..|++|+.+.+... +..-.-..+ ..| +|+.+.+.++. ... .....
T Consensus 295 aF~~c~~L~~l~l~~~--i~~I~-~~aF~~c~~L~~l~lp~~--l~~I~~~aF-~~~--~L~~l~l~~n~-~~~-l~~~~ 364 (401)
T 4fdw_A 295 CLEGCPKLARFEIPES--IRILG-QGLLGGNRKVTQLTIPAN--VTQINFSAF-NNT--GIKEVKVEGTT-PPQ-VFEKV 364 (401)
T ss_dssp TTTTCTTCCEECCCTT--CCEEC-TTTTTTCCSCCEEEECTT--CCEECTTSS-SSS--CCCEEEECCSS-CCB-CCCSS
T ss_pred HhhCCccCCeEEeCCc--eEEEh-hhhhcCCCCccEEEECcc--ccEEcHHhC-CCC--CCCEEEEcCCC-Ccc-ccccc
Confidence 3447889999998742 22111 123445889999999542 221111111 222 79999998752 211 00112
Q ss_pred HhcCC-CCcEEeccC
Q 015721 303 LSQCR-NLEALDIGC 316 (402)
Q Consensus 303 l~~~~-~L~~L~l~~ 316 (402)
+..++ +++.|.+..
T Consensus 365 F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 365 WYGFPDDITVIRVPA 379 (401)
T ss_dssp CCCSCTTCCEEEECG
T ss_pred ccCCCCCccEEEeCH
Confidence 44554 678888864
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=88.52 E-value=0.036 Score=49.21 Aligned_cols=209 Identities=17% Similarity=0.257 Sum_probs=106.6
Q ss_pred hhCCCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCC-CCcChHHHHHHHhcCccCcEEecCCCccCChHHHHHHHH
Q 015721 95 DGFKSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYC-RKLTDKGLSAVAEGCQDLRSLHLAGCKSVTDGTLQALSK 173 (402)
Q Consensus 95 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 173 (402)
..|++|+.+.+... +....-.. ...+++|+.+.+... ..+... ....+..|+.+.+........ ....
T Consensus 159 ~~c~~L~~i~l~~~--~~~I~~~~-F~~c~~L~~i~l~~~~~~I~~~----~F~~~~~L~~i~~~~~~~~i~----~~~~ 227 (394)
T 4fs7_A 159 ATCESLEYVSLPDS--METLHNGL-FSGCGKLKSIKLPRNLKIIRDY----CFAECILLENMEFPNSLYYLG----DFAL 227 (394)
T ss_dssp TTCTTCCEEECCTT--CCEECTTT-TTTCTTCCBCCCCTTCCEECTT----TTTTCTTCCBCCCCTTCCEEC----TTTT
T ss_pred cccCCCcEEecCCc--cceecccc-ccCCCCceEEEcCCCceEeCch----hhccccccceeecCCCceEee----hhhc
Confidence 45788998888652 22111112 246788888887543 112221 234577788777755321111 1122
Q ss_pred hCCCCcEEecCCCCC-CchHHHHHHHhcCCCCCEEccCCCCC-CCcccHHHHHhcCCCCCEEEecCCCCCChHHHHHHHH
Q 015721 174 NCRNLEELGLLGCTS-ISDSGVIDLVNGCQNIKFLDLNKCSN-IGDNGISSVSKSCSSLKTLKLLDCYKVGDKSILSLAK 251 (402)
Q Consensus 174 ~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 251 (402)
....|+.+.+..... +. ...+..+.+|+.+.+..... +.. .....++.++.+..... .+.. ..+.
T Consensus 228 ~~~~l~~i~ip~~~~~i~----~~~f~~~~~l~~~~~~~~~~~i~~----~~F~~~~~l~~~~~~~~-~i~~----~~F~ 294 (394)
T 4fs7_A 228 SKTGVKNIIIPDSFTELG----KSVFYGCTDLESISIQNNKLRIGG----SLFYNCSGLKKVIYGSV-IVPE----KTFY 294 (394)
T ss_dssp TTCCCCEEEECTTCCEEC----SSTTTTCSSCCEEEECCTTCEECS----CTTTTCTTCCEEEECSS-EECT----TTTT
T ss_pred ccCCCceEEECCCceecc----cccccccccceeEEcCCCcceeec----cccccccccceeccCce-eecc----cccc
Confidence 256788887754211 11 12345667788777754211 111 12234566777666542 2221 1233
Q ss_pred hCCCCcEEEecCCC-CCChHHHHHHHHHhcCCCcEEEccCC-CCCChHHHHHHHhcCCCCcEEeccCC-CCCChHHHHHH
Q 015721 252 FCKNLETLIIGGCR-DISDESIKHLAASCKSSLKNLRMDWC-LNISDSSLSCILSQCRNLEALDIGCC-EEVTDAAFQDL 328 (402)
Q Consensus 252 ~~~~L~~L~l~~~~-~~~~~~~~~l~~~~~~~L~~L~l~~~-~~~~~~~l~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~ 328 (402)
.+.+|+.+.+...- .+.+..+ ..| .+|+.+++... ..+.+ ..+.+|++|+.+.+... ..+.+..
T Consensus 295 ~~~~L~~i~l~~~i~~I~~~aF----~~c-~~L~~i~lp~~v~~I~~----~aF~~c~~L~~i~lp~~l~~I~~~a---- 361 (394)
T 4fs7_A 295 GCSSLTEVKLLDSVKFIGEEAF----ESC-TSLVSIDLPYLVEEIGK----RSFRGCTSLSNINFPLSLRKIGANA---- 361 (394)
T ss_dssp TCTTCCEEEECTTCCEECTTTT----TTC-TTCCEECCCTTCCEECT----TTTTTCTTCCEECCCTTCCEECTTT----
T ss_pred ccccccccccccccceechhhh----cCC-CCCCEEEeCCcccEEhH----HhccCCCCCCEEEECccccEehHHH----
Confidence 46778888774421 1122222 223 67888877432 11221 23678888888888642 2222222
Q ss_pred HhccCCCcEEEE
Q 015721 329 GEVELSLKVLKV 340 (402)
Q Consensus 329 ~~~~~~L~~L~l 340 (402)
...+++|+.+.+
T Consensus 362 F~~C~~L~~i~l 373 (394)
T 4fs7_A 362 FQGCINLKKVEL 373 (394)
T ss_dssp BTTCTTCCEEEE
T ss_pred hhCCCCCCEEEE
Confidence 234558888888
No 164
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=86.94 E-value=0.4 Score=42.38 Aligned_cols=123 Identities=18% Similarity=0.350 Sum_probs=64.0
Q ss_pred hhCCCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCC-CCcChHHHHHHHhcCccCcEEecCCC-ccCChHHHHHHH
Q 015721 95 DGFKSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYC-RKLTDKGLSAVAEGCQDLRSLHLAGC-KSVTDGTLQALS 172 (402)
Q Consensus 95 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~ 172 (402)
..+.+|+.+.+... +...+-.++ ..+++|+.+.+... ..+... .+.+|.+|+++.+... ..+.+ ..+
T Consensus 262 ~~c~~L~~i~lp~~--~~~I~~~aF-~~c~~L~~i~l~~~i~~I~~~----aF~~c~~L~~i~lp~~v~~I~~----~aF 330 (394)
T 4gt6_A 262 DSCAYLASVKMPDS--VVSIGTGAF-MNCPALQDIEFSSRITELPES----VFAGCISLKSIDIPEGITQILD----DAF 330 (394)
T ss_dssp TTCSSCCEEECCTT--CCEECTTTT-TTCTTCCEEECCTTCCEECTT----TTTTCTTCCEEECCTTCCEECT----TTT
T ss_pred eecccccEEecccc--cceecCccc-ccccccccccCCCcccccCce----eecCCCCcCEEEeCCcccEehH----hHh
Confidence 45778888887642 222111222 45778888887542 122222 2356888888888652 12222 223
Q ss_pred HhCCCCcEEecCCC-CCCchHHHHHHHhcCCCCCEEccCCCCCCCcccHHHHHhcCCCCCEEEecC
Q 015721 173 KNCRNLEELGLLGC-TSISDSGVIDLVNGCQNIKFLDLNKCSNIGDNGISSVSKSCSSLKTLKLLD 237 (402)
Q Consensus 173 ~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 237 (402)
..|.+|+.+.+... ..+.. ..+.+|.+|+.+.+.+... .......+.+|+.+.+..
T Consensus 331 ~~C~~L~~i~ip~sv~~I~~----~aF~~C~~L~~i~~~~~~~-----~~~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 331 AGCEQLERIAIPSSVTKIPE----SAFSNCTALNNIEYSGSRS-----QWNAISTDSGLQNLPVAP 387 (394)
T ss_dssp TTCTTCCEEEECTTCCBCCG----GGGTTCTTCCEEEESSCHH-----HHHTCBCCCCC-------
T ss_pred hCCCCCCEEEECcccCEEhH----hHhhCCCCCCEEEECCcee-----ehhhhhccCCCCEEEeCC
Confidence 45888888888542 22222 3467788888888875210 111223456777777653
No 165
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=74.79 E-value=3.1 Score=36.59 Aligned_cols=126 Identities=17% Similarity=0.308 Sum_probs=72.4
Q ss_pred HHHhcCcceEEeccCCcCCCCCCCCChhhHHHHHhhCCCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCC-CCcCh
Q 015721 61 IAARFSRLVELDLSQSVSRSFYPGVTDSDLAVIADGFKSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYC-RKLTD 139 (402)
Q Consensus 61 ~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~ 139 (402)
.+..+..|+.+.+.... ..+....+ ..+++|+.+.+.. .+...+-..+ ..|.+|+++.+... ..+..
T Consensus 260 aF~~c~~L~~i~lp~~~-----~~I~~~aF----~~c~~L~~i~l~~--~i~~I~~~aF-~~c~~L~~i~lp~~v~~I~~ 327 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSV-----VSIGTGAF----MNCPALQDIEFSS--RITELPESVF-AGCISLKSIDIPEGITQILD 327 (394)
T ss_dssp TTTTCSSCCEEECCTTC-----CEECTTTT----TTCTTCCEEECCT--TCCEECTTTT-TTCTTCCEEECCTTCCEECT
T ss_pred eeeecccccEEeccccc-----ceecCccc----ccccccccccCCC--cccccCceee-cCCCCcCEEEeCCcccEehH
Confidence 44567888888886432 22222222 4688999999864 2333222233 56899999999642 22333
Q ss_pred HHHHHHHhcCccCcEEecCCC-ccCChHHHHHHHHhCCCCcEEecCCCCCCchHHHHHHHhcCCCCCEEccCC
Q 015721 140 KGLSAVAEGCQDLRSLHLAGC-KSVTDGTLQALSKNCRNLEELGLLGCTSISDSGVIDLVNGCQNIKFLDLNK 211 (402)
Q Consensus 140 ~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 211 (402)
. .+.+|.+|+++.+... ..+.. ..+.+|++|+.+++.+.. ... ..+..+.+|+.+.+..
T Consensus 328 ~----aF~~C~~L~~i~ip~sv~~I~~----~aF~~C~~L~~i~~~~~~----~~~-~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 328 D----AFAGCEQLERIAIPSSVTKIPE----SAFSNCTALNNIEYSGSR----SQW-NAISTDSGLQNLPVAP 387 (394)
T ss_dssp T----TTTTCTTCCEEEECTTCCBCCG----GGGTTCTTCCEEEESSCH----HHH-HTCBCCCCC-------
T ss_pred h----HhhCCCCCCEEEECcccCEEhH----hHhhCCCCCCEEEECCce----eeh-hhhhccCCCCEEEeCC
Confidence 2 2357899999999652 22222 234569999999998721 112 3345678888887753
No 166
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=69.44 E-value=1.6 Score=31.38 Aligned_cols=40 Identities=13% Similarity=0.154 Sum_probs=23.1
Q ss_pred CCcEEEEeCCCCCHHHHHHHHHhCCCCCEEeccCCCCCCHh
Q 015721 334 SLKVLKVNCPKVTVVGIGNVLEKCASLEYIDVRSCPHVTQA 374 (402)
Q Consensus 334 ~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~ 374 (402)
+|+.|+|+.|.++...- ..+..+++|+.|++.++|..-+-
T Consensus 32 ~l~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~~NP~~CdC 71 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPP-GLLDALPALRTAHLGANPWRCDC 71 (130)
T ss_dssp TCSEEECTTSCCSSCCT-TTGGGCTTCCEEECCSSCCBCSG
T ss_pred CCCEEECCCCcCCccCh-hhhhhccccCEEEecCCCeeccC
Confidence 56666665555554322 22345667777777776665443
No 167
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=66.44 E-value=0.63 Score=41.09 Aligned_cols=119 Identities=18% Similarity=0.268 Sum_probs=65.5
Q ss_pred hCCCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCC-CCcChHHHHHHHhcCccCcEEecCCCccCChHHHHHHHHh
Q 015721 96 GFKSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYC-RKLTDKGLSAVAEGCQDLRSLHLAGCKSVTDGTLQALSKN 174 (402)
Q Consensus 96 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 174 (402)
.+..++.+...... +... ....+.+|+.+.+... ..+... .+.+|.+|+.+++... +.... ...+.+
T Consensus 274 ~~~~l~~~~~~~~~-i~~~----~F~~~~~L~~i~l~~~i~~I~~~----aF~~c~~L~~i~lp~~--v~~I~-~~aF~~ 341 (394)
T 4fs7_A 274 NCSGLKKVIYGSVI-VPEK----TFYGCSSLTEVKLLDSVKFIGEE----AFESCTSLVSIDLPYL--VEEIG-KRSFRG 341 (394)
T ss_dssp TCTTCCEEEECSSE-ECTT----TTTTCTTCCEEEECTTCCEECTT----TTTTCTTCCEECCCTT--CCEEC-TTTTTT
T ss_pred cccccceeccCcee-eccc----cccccccccccccccccceechh----hhcCCCCCCEEEeCCc--ccEEh-HHhccC
Confidence 46677777665421 2211 1245788999888642 222222 2356889999998652 22211 123445
Q ss_pred CCCCcEEecCCCCCCchHHHHHHHhcCCCCCEEccCCCCCCCcccHHHHHhcCCCCCEE
Q 015721 175 CRNLEELGLLGCTSISDSGVIDLVNGCQNIKFLDLNKCSNIGDNGISSVSKSCSSLKTL 233 (402)
Q Consensus 175 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 233 (402)
|.+|+.+.+... +...+ ...+.+|++|+.+.+... +.. +...+..+++|+.+
T Consensus 342 c~~L~~i~lp~~--l~~I~-~~aF~~C~~L~~i~lp~~--~~~--~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 342 CTSLSNINFPLS--LRKIG-ANAFQGCINLKKVELPKR--LEQ--YRYDFEDTTKFKWI 393 (394)
T ss_dssp CTTCCEECCCTT--CCEEC-TTTBTTCTTCCEEEEEGG--GGG--GGGGBCTTCEEEEE
T ss_pred CCCCCEEEECcc--ccEeh-HHHhhCCCCCCEEEECCC--CEE--hhheecCCCCCcEE
Confidence 889999988652 22110 134678899999988542 211 12223456666554
No 168
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=49.52 E-value=9.4 Score=21.15 Aligned_cols=17 Identities=29% Similarity=0.153 Sum_probs=11.7
Q ss_pred cccCCHHHHHHHHccCC
Q 015721 7 NEVLRDDELRSILSRLE 23 (402)
Q Consensus 7 ~~~LP~eil~~If~~L~ 23 (402)
|..||.||..+|++.-.
T Consensus 21 F~~LP~dIQ~Ells~~~ 37 (48)
T 2kwv_A 21 FKQLPADIQEEILSGKS 37 (48)
T ss_dssp TTTSCHHHHHHHTTCCC
T ss_pred HHHCcHHHHHHHHhcch
Confidence 45688888888876443
No 169
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=48.69 E-value=11 Score=26.94 Aligned_cols=38 Identities=13% Similarity=0.101 Sum_probs=20.3
Q ss_pred cCCCcEEEccCCCCCChHHHHHHHhcCCCCcEEeccCCCC
Q 015721 280 KSSLKNLRMDWCLNISDSSLSCILSQCRNLEALDIGCCEE 319 (402)
Q Consensus 280 ~~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~ 319 (402)
+.+|++|+|+++ .++.- -...+..+++|+.|++.++..
T Consensus 30 p~~l~~L~Ls~N-~l~~l-~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 30 PVDTTELVLTGN-NLTAL-PPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp CTTCSEEECTTS-CCSSC-CTTTGGGCTTCCEEECCSSCC
T ss_pred CcCCCEEECCCC-cCCcc-ChhhhhhccccCEEEecCCCe
Confidence 345666666665 23210 012355667777777776543
No 170
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=47.63 E-value=6.1 Score=34.38 Aligned_cols=125 Identities=15% Similarity=0.300 Sum_probs=72.5
Q ss_pred HhcCcceEEeccCCcCCCCCCCCChhhHHHHHhhCCCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCCC-CcChHH
Q 015721 63 ARFSRLVELDLSQSVSRSFYPGVTDSDLAVIADGFKSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCR-KLTDKG 141 (402)
Q Consensus 63 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~ 141 (402)
..+.+++.+.+.... ..+....+ ..+.+|+.+.+... ++..+-.++ ..+.+|+.+.+...- .+..
T Consensus 214 ~~~~~l~~i~~~~~~-----~~i~~~~f----~~~~~L~~i~lp~~--v~~I~~~aF-~~~~~l~~i~l~~~i~~i~~-- 279 (379)
T 4h09_A 214 SYGKNLKKITITSGV-----TTLGDGAF----YGMKALDEIAIPKN--VTSIGSFLL-QNCTALKTLNFYAKVKTVPY-- 279 (379)
T ss_dssp TTCSSCSEEECCTTC-----CEECTTTT----TTCSSCCEEEECTT--CCEECTTTT-TTCTTCCEEEECCCCSEECT--
T ss_pred ccccccceeeeccce-----eEEccccc----cCCccceEEEcCCC--ccEeCcccc-ceeehhccccccccceeccc--
Confidence 345667777775431 12222221 35788999988652 332222222 457889999886421 1222
Q ss_pred HHHHHhcCccCcEEecCCC--ccCChHHHHHHHHhCCCCcEEecCCC-CCCchHHHHHHHhcCCCCCEEccCC
Q 015721 142 LSAVAEGCQDLRSLHLAGC--KSVTDGTLQALSKNCRNLEELGLLGC-TSISDSGVIDLVNGCQNIKFLDLNK 211 (402)
Q Consensus 142 ~~~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~ 211 (402)
..+.+|++|+.+.+.+. ..+.+ ..+.+|.+|+.+.+... ..+.. ..+.+|.+|+.+.+..
T Consensus 280 --~aF~~c~~L~~i~l~~~~i~~I~~----~aF~~c~~L~~i~lp~~l~~I~~----~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 280 --LLCSGCSNLTKVVMDNSAIETLEP----RVFMDCVKLSSVTLPTALKTIQV----YAFKNCKALSTISYPK 342 (379)
T ss_dssp --TTTTTCTTCCEEEECCTTCCEECT----TTTTTCTTCCEEECCTTCCEECT----TTTTTCTTCCCCCCCT
T ss_pred --cccccccccccccccccccceehh----hhhcCCCCCCEEEcCccccEEHH----HHhhCCCCCCEEEECC
Confidence 22356899999999753 12222 23445899999999642 22222 3467889999988853
No 171
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=39.03 E-value=13 Score=32.16 Aligned_cols=104 Identities=20% Similarity=0.257 Sum_probs=62.9
Q ss_pred HHhcCcceEEeccCCcCCCCCCCCChhhHHHHHhhCCCCCEEEccCCCCCChhHHHHHHhcCCCCCeEecCCCC--CcCh
Q 015721 62 AARFSRLVELDLSQSVSRSFYPGVTDSDLAVIADGFKSLKLLNLQNCKGITDAGIASIGSGLCSLQSLDLSYCR--KLTD 139 (402)
Q Consensus 62 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~ 139 (402)
...+..|+.+.+... ...+....+ ..+.+|+.+.+... +...+...+ ..|.+|+.+.+.++. .+..
T Consensus 236 f~~~~~L~~i~lp~~-----v~~I~~~aF----~~~~~l~~i~l~~~--i~~i~~~aF-~~c~~L~~i~l~~~~i~~I~~ 303 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-----VTSIGSFLL----QNCTALKTLNFYAK--VKTVPYLLC-SGCSNLTKVVMDNSAIETLEP 303 (379)
T ss_dssp TTTCSSCCEEEECTT-----CCEECTTTT----TTCTTCCEEEECCC--CSEECTTTT-TTCTTCCEEEECCTTCCEECT
T ss_pred ccCCccceEEEcCCC-----ccEeCcccc----ceeehhcccccccc--ceecccccc-ccccccccccccccccceehh
Confidence 346778888888643 122222222 45788999998652 333222222 568999999997532 2333
Q ss_pred HHHHHHHhcCccCcEEecCCC-ccCChHHHHHHHHhCCCCcEEecCC
Q 015721 140 KGLSAVAEGCQDLRSLHLAGC-KSVTDGTLQALSKNCRNLEELGLLG 185 (402)
Q Consensus 140 ~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~ 185 (402)
. .+.+|.+|+.+.+... ..+.. ..+.+|++|+.+.+..
T Consensus 304 ~----aF~~c~~L~~i~lp~~l~~I~~----~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 304 R----VFMDCVKLSSVTLPTALKTIQV----YAFKNCKALSTISYPK 342 (379)
T ss_dssp T----TTTTCTTCCEEECCTTCCEECT----TTTTTCTTCCCCCCCT
T ss_pred h----hhcCCCCCCEEEcCccccEEHH----HHhhCCCCCCEEEECC
Confidence 2 2356899999999652 22222 2344589999998864
Done!