Query 015722
Match_columns 402
No_of_seqs 265 out of 2352
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 08:57:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015722.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015722hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0538 Glycolate oxidase [Ene 100.0 1.8E-90 3.9E-95 651.8 30.9 355 38-392 1-356 (363)
2 PLN02493 probable peroxisomal 100.0 1.3E-83 2.9E-88 637.7 35.4 366 37-402 2-367 (367)
3 PRK11197 lldD L-lactate dehydr 100.0 1.9E-80 4.1E-85 618.6 34.9 356 37-393 2-379 (381)
4 PLN02535 glycolate oxidase 100.0 5.5E-80 1.2E-84 612.7 34.4 360 36-398 3-362 (364)
5 TIGR02708 L_lactate_ox L-lacta 100.0 3.8E-79 8.2E-84 606.6 35.1 348 36-390 11-359 (367)
6 cd04736 MDH_FMN Mandelate dehy 100.0 3.6E-79 7.8E-84 605.6 33.9 342 42-386 1-361 (361)
7 cd03332 LMO_FMN L-Lactate 2-mo 100.0 1.3E-78 2.9E-83 606.3 35.9 350 38-388 18-382 (383)
8 cd04737 LOX_like_FMN L-Lactate 100.0 1.8E-77 3.8E-82 593.9 34.1 347 37-389 4-351 (351)
9 PF01070 FMN_dh: FMN-dependent 100.0 1.1E-75 2.3E-80 584.5 32.4 343 48-390 1-356 (356)
10 cd02922 FCB2_FMN Flavocytochro 100.0 1.2E-73 2.7E-78 566.5 35.6 338 42-386 1-343 (344)
11 PLN02979 glycolate oxidase 100.0 3.8E-70 8.2E-75 537.4 32.3 324 79-402 43-366 (366)
12 COG1304 idi Isopentenyl diphos 100.0 6.4E-64 1.4E-68 497.1 24.5 348 41-393 1-352 (360)
13 cd02809 alpha_hydroxyacid_oxid 100.0 5.6E-58 1.2E-62 449.1 33.9 299 42-386 1-299 (299)
14 cd02811 IDI-2_FMN Isopentenyl- 100.0 5.3E-38 1.2E-42 311.0 25.8 269 73-386 18-326 (326)
15 PRK05437 isopentenyl pyrophosp 100.0 1.3E-37 2.8E-42 310.9 26.1 277 75-392 28-339 (352)
16 TIGR02151 IPP_isom_2 isopenten 100.0 2.4E-36 5.3E-41 300.0 25.1 276 75-391 21-331 (333)
17 TIGR01306 GMP_reduct_2 guanosi 100.0 4E-29 8.7E-34 244.6 21.0 257 76-392 3-313 (321)
18 PRK05458 guanosine 5'-monophos 100.0 3.1E-28 6.8E-33 239.2 25.7 256 76-391 6-315 (326)
19 TIGR01305 GMP_reduct_1 guanosi 100.0 1.8E-27 3.9E-32 231.3 24.2 255 76-387 9-329 (343)
20 cd02808 GltS_FMN Glutamate syn 99.9 1.7E-25 3.8E-30 226.7 26.6 273 94-391 61-391 (392)
21 PRK08649 inosine 5-monophospha 99.9 2.2E-25 4.8E-30 223.2 24.1 289 76-391 17-367 (368)
22 cd00381 IMPDH IMPDH: The catal 99.9 1.3E-24 2.8E-29 215.3 24.1 257 76-390 3-322 (325)
23 TIGR01304 IMP_DH_rel_2 IMP deh 99.9 8.7E-25 1.9E-29 218.4 20.6 290 75-390 13-368 (369)
24 PF00478 IMPDH: IMP dehydrogen 99.9 6.4E-24 1.4E-28 210.0 21.9 256 76-388 4-336 (352)
25 PRK06843 inosine 5-monophospha 99.9 3.4E-23 7.4E-28 208.4 24.9 256 75-387 10-381 (404)
26 TIGR01037 pyrD_sub1_fam dihydr 99.9 3.8E-23 8.3E-28 202.8 23.1 238 95-387 1-298 (300)
27 PRK05096 guanosine 5'-monophos 99.9 1.4E-22 3E-27 197.2 22.1 256 75-387 9-330 (346)
28 COG0042 tRNA-dihydrouridine sy 99.9 1E-22 2.2E-27 201.3 21.2 251 99-392 4-288 (323)
29 cd04739 DHOD_like Dihydroorota 99.9 1.5E-21 3.2E-26 193.6 27.2 239 94-387 1-302 (325)
30 PRK07259 dihydroorotate dehydr 99.9 1.1E-21 2.4E-26 192.6 25.9 239 94-387 1-298 (301)
31 PRK10415 tRNA-dihydrouridine s 99.9 2.7E-22 5.8E-27 198.6 21.1 250 98-391 2-286 (321)
32 cd04740 DHOD_1B_like Dihydroor 99.9 2.7E-21 5.8E-26 189.4 25.8 237 96-387 1-295 (296)
33 PRK07565 dihydroorotate dehydr 99.9 6.4E-21 1.4E-25 189.9 26.3 240 94-388 2-305 (334)
34 PRK10550 tRNA-dihydrouridine s 99.9 2.5E-21 5.4E-26 190.7 21.6 240 106-389 1-278 (312)
35 TIGR00737 nifR3_yhdG putative 99.9 4.3E-21 9.3E-26 190.0 23.3 246 100-387 2-280 (319)
36 PLN02495 oxidoreductase, actin 99.9 7.3E-21 1.6E-25 191.2 23.9 251 90-388 6-336 (385)
37 TIGR00742 yjbN tRNA dihydrouri 99.9 3.2E-21 6.9E-26 190.3 20.9 239 107-391 2-281 (318)
38 PTZ00314 inosine-5'-monophosph 99.9 5.2E-20 1.1E-24 191.6 26.2 144 243-386 265-466 (495)
39 PRK07107 inosine 5-monophospha 99.9 1.3E-20 2.8E-25 195.9 21.7 142 246-387 269-472 (502)
40 cd02940 DHPD_FMN Dihydropyrimi 99.9 2.4E-20 5.2E-25 183.0 22.0 215 94-348 1-286 (299)
41 COG0167 PyrD Dihydroorotate de 99.9 5.4E-20 1.2E-24 179.2 23.3 177 167-389 106-308 (310)
42 PLN02826 dihydroorotate dehydr 99.9 2.9E-19 6.3E-24 181.3 28.9 122 258-387 261-406 (409)
43 PRK08318 dihydropyrimidine deh 99.8 1.4E-19 3.1E-24 185.5 23.4 249 93-389 2-320 (420)
44 PRK05567 inosine 5'-monophosph 99.8 9.8E-20 2.1E-24 189.8 22.1 141 247-387 256-455 (486)
45 PLN02274 inosine-5'-monophosph 99.8 1.3E-19 2.8E-24 188.7 22.4 143 243-387 272-473 (505)
46 TIGR01302 IMP_dehydrog inosine 99.8 2E-19 4.4E-24 185.7 23.2 302 76-385 3-449 (450)
47 TIGR01303 IMP_DH_rel_1 IMP deh 99.8 2.1E-19 4.5E-24 185.8 22.6 146 243-388 249-457 (475)
48 PRK02506 dihydroorotate dehydr 99.8 3.8E-19 8.1E-24 175.3 22.7 241 94-387 1-306 (310)
49 PRK05286 dihydroorotate dehydr 99.8 8.5E-19 1.9E-23 175.2 24.4 233 90-377 44-344 (344)
50 PRK11815 tRNA-dihydrouridine s 99.8 4.4E-19 9.5E-24 176.5 22.3 244 102-391 7-291 (333)
51 PF01207 Dus: Dihydrouridine s 99.8 5.5E-20 1.2E-24 181.2 15.1 242 109-392 1-275 (309)
52 PF01645 Glu_synthase: Conserv 99.8 7.7E-19 1.7E-23 175.0 20.4 255 102-379 62-368 (368)
53 cd04738 DHOD_2_like Dihydrooro 99.8 1.1E-17 2.3E-22 166.2 23.4 248 66-368 9-326 (327)
54 cd04741 DHOD_1A_like Dihydroor 99.8 1.3E-17 2.9E-22 163.3 23.0 223 97-373 1-294 (294)
55 cd02801 DUS_like_FMN Dihydrour 99.8 2.6E-17 5.6E-22 155.0 18.1 200 107-348 1-218 (231)
56 cd02810 DHOD_DHPD_FMN Dihydroo 99.8 7.2E-17 1.6E-21 157.4 21.8 207 97-348 1-277 (289)
57 PRK07807 inosine 5-monophospha 99.8 1.1E-16 2.4E-21 165.8 23.6 143 246-388 254-459 (479)
58 cd02911 arch_FMN Archeal FMN-b 99.7 4.6E-17 9.9E-22 154.3 17.3 189 107-345 1-222 (233)
59 KOG2335 tRNA-dihydrouridine sy 99.7 1.6E-16 3.5E-21 155.1 18.4 202 103-348 15-238 (358)
60 COG0069 GltB Glutamate synthas 99.7 7E-16 1.5E-20 157.1 23.1 263 102-388 163-477 (485)
61 PF01180 DHO_dh: Dihydroorotat 99.7 2.7E-16 5.9E-21 154.0 17.8 224 95-373 2-295 (295)
62 PRK11750 gltB glutamate syntha 99.7 4.5E-16 9.7E-21 174.5 21.3 311 39-384 801-1165(1485)
63 KOG2550 IMP dehydrogenase/GMP 99.7 1.1E-16 2.3E-21 157.4 12.4 306 74-387 29-476 (503)
64 TIGR01036 pyrD_sub2 dihydrooro 99.7 5.7E-15 1.2E-19 147.1 23.0 207 95-348 46-322 (335)
65 TIGR03151 enACPred_II putative 99.7 1.3E-14 2.9E-19 142.9 23.0 184 99-352 7-199 (307)
66 TIGR00736 nifR3_rel_arch TIM-b 99.6 6.3E-15 1.4E-19 138.9 15.7 153 157-349 68-226 (231)
67 PF03060 NMO: Nitronate monoox 99.6 7.5E-14 1.6E-18 139.0 23.6 198 104-352 10-228 (330)
68 KOG1436 Dihydroorotate dehydro 99.6 1.5E-13 3.3E-18 131.5 20.0 121 259-387 252-396 (398)
69 cd04730 NPD_like 2-Nitropropan 99.5 1.5E-12 3.4E-17 123.0 21.8 190 105-358 2-200 (236)
70 COG2070 Dioxygenases related t 99.5 1.9E-12 4.2E-17 128.8 17.3 101 248-352 117-222 (336)
71 PRK13523 NADPH dehydrogenase N 99.4 4.3E-12 9.2E-17 126.6 17.6 225 96-348 6-310 (337)
72 cd04743 NPD_PKS 2-Nitropropane 99.4 1.4E-11 3.1E-16 121.0 20.2 182 105-350 2-209 (320)
73 cd04742 NPD_FabD 2-Nitropropan 99.4 6.2E-11 1.3E-15 120.3 22.3 219 104-351 12-256 (418)
74 cd02803 OYE_like_FMN_family Ol 99.3 2.8E-11 6.1E-16 120.1 16.7 150 173-348 144-316 (327)
75 cd04722 TIM_phosphate_binding 99.3 1.1E-10 2.4E-15 105.3 18.1 185 108-344 1-200 (200)
76 TIGR02814 pfaD_fam PfaD family 99.3 5.8E-10 1.2E-14 114.0 23.4 220 104-352 17-262 (444)
77 cd04734 OYE_like_3_FMN Old yel 99.3 4.3E-10 9.4E-15 112.6 19.5 223 97-348 5-320 (343)
78 cd02932 OYE_YqiM_FMN Old yello 99.3 3.6E-10 7.7E-15 112.9 18.9 150 173-348 157-325 (336)
79 PRK01130 N-acetylmannosamine-6 99.2 1.2E-09 2.7E-14 102.5 19.7 174 124-348 25-207 (221)
80 cd04735 OYE_like_4_FMN Old yel 99.2 3.3E-10 7.1E-15 113.9 16.6 152 173-348 147-318 (353)
81 cd02931 ER_like_FMN Enoate red 99.2 8.3E-10 1.8E-14 112.1 18.9 148 173-348 153-340 (382)
82 KOG2333 Uncharacterized conser 99.2 9.1E-10 2E-14 110.9 17.6 234 104-379 263-529 (614)
83 cd04747 OYE_like_5_FMN Old yel 99.2 1.9E-09 4.1E-14 108.5 19.4 149 173-348 147-333 (361)
84 cd04729 NanE N-acetylmannosami 99.2 3.7E-09 8E-14 99.3 19.4 98 248-348 112-211 (219)
85 cd02933 OYE_like_FMN Old yello 99.1 1.3E-09 2.9E-14 108.9 14.7 148 173-348 155-319 (338)
86 PF04131 NanE: Putative N-acet 99.1 5.1E-09 1.1E-13 94.9 15.9 96 248-348 82-178 (192)
87 PRK08255 salicylyl-CoA 5-hydro 99.1 1.9E-08 4.1E-13 110.8 22.7 149 173-348 554-722 (765)
88 cd02930 DCR_FMN 2,4-dienoyl-Co 99.1 8.3E-09 1.8E-13 103.8 18.2 226 97-348 5-311 (353)
89 COG1902 NemA NADH:flavin oxido 99.1 1.7E-08 3.7E-13 101.5 20.3 150 173-349 152-324 (363)
90 PRK10605 N-ethylmaleimide redu 99.0 2.7E-08 5.8E-13 100.4 21.4 146 173-348 162-326 (362)
91 cd04733 OYE_like_2_FMN Old yel 99.0 2.7E-09 5.9E-14 106.6 13.9 151 172-348 151-327 (338)
92 KOG1799 Dihydropyrimidine dehy 99.0 6.7E-10 1.4E-14 107.8 8.8 255 83-390 91-424 (471)
93 PRK06552 keto-hydroxyglutarate 99.0 2.4E-08 5.2E-13 93.5 17.0 172 160-348 15-188 (213)
94 cd02929 TMADH_HD_FMN Trimethyl 99.0 3.4E-08 7.3E-13 100.0 19.2 148 173-348 153-324 (370)
95 PRK09140 2-dehydro-3-deoxy-6-p 98.9 9.4E-08 2E-12 89.1 16.6 170 163-348 15-184 (206)
96 PF00724 Oxidored_FMN: NADH:fl 98.9 7.1E-08 1.5E-12 96.6 16.6 224 97-348 6-326 (341)
97 cd00331 IGPS Indole-3-glycerol 98.9 8.7E-08 1.9E-12 89.7 15.6 79 268-349 129-207 (217)
98 cd04727 pdxS PdxS is a subunit 98.8 9.8E-08 2.1E-12 91.6 13.1 98 248-348 101-230 (283)
99 TIGR00262 trpA tryptophan synt 98.8 7.2E-07 1.6E-11 85.9 19.2 156 166-350 20-234 (256)
100 PRK00278 trpC indole-3-glycero 98.8 2.9E-07 6.3E-12 88.8 16.4 81 266-349 166-246 (260)
101 TIGR01182 eda Entner-Doudoroff 98.7 2.6E-07 5.6E-12 85.8 14.8 171 160-348 10-181 (204)
102 cd04732 HisA HisA. Phosphorib 98.7 3.9E-07 8.5E-12 86.0 15.3 102 246-349 60-225 (234)
103 COG3010 NanE Putative N-acetyl 98.7 1.9E-06 4.1E-11 78.8 18.8 87 258-347 125-213 (229)
104 PRK07114 keto-hydroxyglutarate 98.7 5.6E-07 1.2E-11 84.6 15.0 172 160-347 17-192 (222)
105 TIGR00343 pyridoxal 5'-phospha 98.7 2.4E-07 5.3E-12 89.0 12.7 98 248-348 103-233 (287)
106 cd00452 KDPG_aldolase KDPG and 98.7 8.3E-07 1.8E-11 81.6 15.3 168 161-347 7-175 (190)
107 CHL00200 trpA tryptophan synth 98.7 3.1E-06 6.6E-11 81.8 19.6 157 166-351 25-239 (263)
108 cd04731 HisF The cyclase subun 98.6 3.9E-07 8.4E-12 86.8 12.8 77 270-349 152-229 (243)
109 KOG2334 tRNA-dihydrouridine sy 98.6 9.8E-07 2.1E-11 88.2 13.8 205 102-350 7-249 (477)
110 PRK06015 keto-hydroxyglutarate 98.6 2.6E-06 5.6E-11 78.9 15.7 169 161-347 7-176 (201)
111 PRK04180 pyridoxal biosynthesi 98.6 6E-07 1.3E-11 86.5 11.5 97 249-348 111-239 (293)
112 PRK00507 deoxyribose-phosphate 98.6 1.6E-06 3.4E-11 81.7 14.2 94 247-345 108-210 (221)
113 PF01081 Aldolase: KDPG and KH 98.5 5.3E-07 1.1E-11 83.3 10.1 169 162-348 12-181 (196)
114 PRK07695 transcriptional regul 98.5 1.7E-06 3.7E-11 80.1 13.4 111 251-371 86-199 (201)
115 PLN02591 tryptophan synthase 98.5 1.2E-05 2.5E-10 77.2 19.1 154 166-350 12-225 (250)
116 PRK14024 phosphoribosyl isomer 98.5 6.6E-07 1.4E-11 85.4 10.4 77 270-349 149-228 (241)
117 PRK13111 trpA tryptophan synth 98.5 1.3E-05 2.8E-10 77.3 18.7 156 166-351 22-236 (258)
118 PRK01033 imidazole glycerol ph 98.5 1E-06 2.2E-11 85.0 11.1 76 271-349 156-232 (258)
119 TIGR00007 phosphoribosylformim 98.5 1.5E-06 3.3E-11 81.9 12.0 77 270-349 148-224 (230)
120 COG0274 DeoC Deoxyribose-phosp 98.5 1.1E-06 2.5E-11 81.7 10.5 97 244-344 108-213 (228)
121 PRK13125 trpA tryptophan synth 98.5 2.1E-05 4.5E-10 75.2 19.6 100 249-350 120-221 (244)
122 cd04728 ThiG Thiazole synthase 98.4 1.7E-06 3.6E-11 81.8 11.2 77 267-348 131-209 (248)
123 cd04724 Tryptophan_synthase_al 98.4 1.9E-05 4E-10 75.5 17.8 152 167-350 11-222 (242)
124 PRK00208 thiG thiazole synthas 98.4 2.6E-06 5.6E-11 80.6 11.4 77 267-348 131-209 (250)
125 PRK07455 keto-hydroxyglutarate 98.4 5.5E-06 1.2E-10 76.1 13.1 170 160-347 14-184 (187)
126 PF00218 IGPS: Indole-3-glycer 98.4 6.1E-06 1.3E-10 79.2 13.8 168 173-349 71-244 (254)
127 TIGR03572 WbuZ glycosyl amidat 98.4 3.8E-06 8.3E-11 79.4 12.2 76 270-348 156-232 (232)
128 PRK00748 1-(5-phosphoribosyl)- 98.4 1.7E-06 3.6E-11 81.7 9.2 77 270-349 149-226 (233)
129 COG0800 Eda 2-keto-3-deoxy-6-p 98.4 5.3E-06 1.2E-10 76.8 12.1 165 166-347 21-185 (211)
130 PRK13587 1-(5-phosphoribosyl)- 98.4 3.6E-06 7.9E-11 80.0 11.3 100 247-348 64-226 (234)
131 PRK02083 imidazole glycerol ph 98.3 4.5E-06 9.7E-11 80.1 11.7 77 270-349 156-233 (253)
132 PRK13585 1-(5-phosphoribosyl)- 98.3 3.7E-06 7.9E-11 79.9 10.6 77 270-349 152-228 (241)
133 COG0107 HisF Imidazoleglycerol 98.3 3.8E-06 8.2E-11 78.2 10.2 117 247-378 62-251 (256)
134 PLN02411 12-oxophytodienoate r 98.3 1E-05 2.2E-10 82.6 14.3 148 173-348 168-347 (391)
135 PRK05718 keto-hydroxyglutarate 98.3 1.8E-05 3.9E-10 74.1 14.6 170 160-348 17-187 (212)
136 TIGR00126 deoC deoxyribose-pho 98.3 9E-06 1.9E-10 76.0 12.5 93 247-344 104-205 (211)
137 TIGR01163 rpe ribulose-phospha 98.3 3.4E-05 7.3E-10 71.4 15.8 47 301-348 149-198 (210)
138 PF00977 His_biosynth: Histidi 98.3 4.4E-06 9.6E-11 79.1 10.0 101 247-349 61-226 (229)
139 PRK13957 indole-3-glycerol-pho 98.3 3.6E-05 7.9E-10 73.4 16.0 167 173-349 64-236 (247)
140 TIGR01304 IMP_DH_rel_2 IMP deh 98.3 5.8E-06 1.3E-10 83.4 10.7 96 243-344 117-217 (369)
141 cd00945 Aldolase_Class_I Class 98.3 8E-05 1.7E-09 67.7 17.3 173 121-343 12-201 (201)
142 cd00959 DeoC 2-deoxyribose-5-p 98.2 2E-05 4.3E-10 73.3 13.1 89 247-341 103-201 (203)
143 cd04723 HisA_HisF Phosphoribos 98.2 1.6E-05 3.4E-10 75.5 12.3 101 247-349 66-224 (233)
144 TIGR00735 hisF imidazoleglycer 98.2 7.7E-06 1.7E-10 78.6 10.2 77 270-349 158-235 (254)
145 COG0134 TrpC Indole-3-glycerol 98.2 5.7E-05 1.2E-09 72.1 15.5 168 174-349 70-242 (254)
146 COG0159 TrpA Tryptophan syntha 98.2 0.00023 5E-09 68.4 19.4 157 166-352 27-242 (265)
147 PRK00043 thiE thiamine-phospha 98.2 2.9E-05 6.3E-10 71.9 13.0 80 267-348 111-193 (212)
148 cd04731 HisF The cyclase subun 98.2 1.8E-05 3.8E-10 75.4 11.3 76 270-348 30-105 (243)
149 PRK13802 bifunctional indole-3 98.1 6.6E-05 1.4E-09 81.4 16.7 168 173-349 73-246 (695)
150 KOG0399 Glutamate synthase [Am 98.1 1E-05 2.2E-10 89.0 10.3 142 246-387 1080-1269(2142)
151 PLN02334 ribulose-phosphate 3- 98.1 0.0002 4.3E-09 67.8 18.1 67 299-373 160-226 (229)
152 COG0106 HisA Phosphoribosylfor 98.1 2.3E-05 5E-10 74.0 11.2 101 247-349 63-227 (241)
153 PRK09427 bifunctional indole-3 98.1 8.7E-05 1.9E-09 77.0 15.9 192 174-385 74-271 (454)
154 PRK02083 imidazole glycerol ph 98.1 2.8E-05 6E-10 74.6 11.4 76 270-348 33-108 (253)
155 PRK08649 inosine 5-monophospha 98.1 1.7E-05 3.7E-10 80.1 10.2 96 243-344 116-216 (368)
156 PRK05848 nicotinate-nucleotide 98.1 3.7E-05 8.1E-10 74.6 12.1 90 248-348 169-262 (273)
157 PF05690 ThiG: Thiazole biosyn 98.1 2.6E-05 5.6E-10 73.1 10.3 78 267-348 131-209 (247)
158 TIGR03128 RuMP_HxlA 3-hexulose 98.1 0.00012 2.7E-09 67.7 14.7 96 249-348 93-191 (206)
159 TIGR00735 hisF imidazoleglycer 98.0 2.5E-05 5.4E-10 75.1 9.9 77 269-348 31-108 (254)
160 PRK07028 bifunctional hexulose 98.0 0.00032 7E-09 72.5 18.7 95 249-348 98-195 (430)
161 PRK14114 1-(5-phosphoribosyl)- 98.0 3.6E-05 7.8E-10 73.5 10.7 100 247-349 62-229 (241)
162 PRK04128 1-(5-phosphoribosyl)- 98.0 4.8E-05 1E-09 72.0 11.3 102 247-349 61-217 (228)
163 PRK07226 fructose-bisphosphate 98.0 0.00018 4E-09 69.6 15.0 87 251-348 131-236 (267)
164 PF00290 Trp_syntA: Tryptophan 98.0 0.00033 7.1E-09 67.5 16.4 157 166-354 20-237 (259)
165 PRK06806 fructose-bisphosphate 98.0 0.0031 6.7E-08 61.6 23.4 109 267-379 152-278 (281)
166 PLN02460 indole-3-glycerol-pho 98.0 0.00022 4.7E-09 70.9 15.5 188 149-349 123-323 (338)
167 cd04726 KGPDC_HPS 3-Keto-L-gul 98.0 0.0002 4.3E-09 65.9 14.4 93 250-347 95-190 (202)
168 cd00564 TMP_TenI Thiamine mono 98.0 9.8E-05 2.1E-09 67.0 11.7 78 268-348 103-183 (196)
169 PRK08883 ribulose-phosphate 3- 98.0 0.00094 2E-08 63.0 18.6 137 166-347 8-199 (220)
170 CHL00162 thiG thiamin biosynth 97.9 8.6E-05 1.9E-09 70.4 11.2 78 267-348 145-223 (267)
171 cd00958 DhnA Class I fructose- 97.9 0.0002 4.3E-09 67.8 13.9 82 256-348 119-219 (235)
172 TIGR01919 hisA-trpF 1-(5-phosp 97.9 7.1E-05 1.5E-09 71.6 10.7 101 247-349 62-231 (243)
173 cd00429 RPE Ribulose-5-phospha 97.9 0.00037 8.1E-09 64.3 15.1 46 302-348 151-199 (211)
174 cd00956 Transaldolase_FSA Tran 97.9 0.0023 5.1E-08 59.9 20.0 100 249-352 92-194 (211)
175 TIGR01859 fruc_bis_ald_ fructo 97.9 0.007 1.5E-07 59.2 23.6 109 267-379 152-279 (282)
176 cd01573 modD_like ModD; Quinol 97.9 0.00089 1.9E-08 65.1 17.1 87 249-346 172-261 (272)
177 cd04732 HisA HisA. Phosphorib 97.8 9.7E-05 2.1E-09 69.7 10.0 76 270-348 32-107 (234)
178 PRK00748 1-(5-phosphoribosyl)- 97.8 0.00018 4E-09 67.8 11.7 75 271-348 34-108 (233)
179 PF01791 DeoC: DeoC/LacD famil 97.8 0.00013 2.8E-09 69.3 10.4 95 249-347 112-234 (236)
180 PTZ00170 D-ribulose-5-phosphat 97.8 0.0018 3.9E-08 61.4 17.8 154 166-371 15-223 (228)
181 PRK04180 pyridoxal biosynthesi 97.8 0.00047 1E-08 66.8 13.5 121 173-343 27-148 (293)
182 PRK04302 triosephosphate isome 97.8 0.0017 3.7E-08 61.2 17.0 98 250-349 106-208 (223)
183 TIGR00693 thiE thiamine-phosph 97.7 0.00044 9.4E-09 63.5 12.3 81 266-348 102-185 (196)
184 PRK05742 nicotinate-nucleotide 97.7 0.0003 6.6E-09 68.4 11.7 89 249-348 178-266 (277)
185 PRK06512 thiamine-phosphate py 97.7 0.0005 1.1E-08 64.9 12.6 95 251-348 100-197 (221)
186 TIGR00734 hisAF_rel hisA/hisF 97.7 0.00015 3.4E-09 68.3 8.9 71 273-349 147-219 (221)
187 TIGR00078 nadC nicotinate-nucl 97.7 0.00043 9.3E-09 67.1 12.1 88 249-347 166-254 (265)
188 PRK05283 deoxyribose-phosphate 97.7 0.00027 5.9E-09 67.8 10.6 95 247-347 117-226 (257)
189 TIGR00875 fsa_talC_mipB fructo 97.7 0.0077 1.7E-07 56.5 20.1 173 123-351 8-193 (213)
190 PRK07428 nicotinate-nucleotide 97.7 0.0004 8.6E-09 68.0 11.9 89 249-348 184-276 (288)
191 PRK02615 thiamine-phosphate py 97.7 0.00066 1.4E-08 68.1 13.3 94 252-348 231-327 (347)
192 PRK14024 phosphoribosyl isomer 97.7 0.00039 8.4E-09 66.4 10.9 75 270-348 35-109 (241)
193 PF04481 DUF561: Protein of un 97.7 0.00058 1.3E-08 63.3 11.4 93 250-347 108-218 (242)
194 COG0214 SNZ1 Pyridoxine biosyn 97.7 0.001 2.2E-08 62.2 13.1 100 247-348 65-242 (296)
195 PRK11840 bifunctional sulfur c 97.6 0.00032 6.9E-09 69.1 10.2 78 266-348 204-283 (326)
196 cd01572 QPRTase Quinolinate ph 97.6 0.00051 1.1E-08 66.7 11.4 88 249-347 170-258 (268)
197 COG0352 ThiE Thiamine monophos 97.6 0.0012 2.6E-08 61.7 13.1 96 251-349 94-192 (211)
198 PLN02446 (5-phosphoribosyl)-5- 97.6 0.00041 8.9E-09 66.8 10.1 97 248-347 73-242 (262)
199 cd00405 PRAI Phosphoribosylant 97.6 0.007 1.5E-07 56.0 18.0 95 249-348 86-186 (203)
200 PRK07315 fructose-bisphosphate 97.6 0.026 5.6E-07 55.5 22.7 79 268-348 154-237 (293)
201 cd01568 QPRTase_NadC Quinolina 97.6 0.00085 1.8E-08 65.2 12.0 88 249-347 169-259 (269)
202 COG0269 SgbH 3-hexulose-6-phos 97.6 0.0015 3.2E-08 60.8 12.8 199 159-370 4-213 (217)
203 PRK13586 1-(5-phosphoribosyl)- 97.6 0.0006 1.3E-08 64.8 10.4 98 248-348 62-223 (232)
204 PRK08745 ribulose-phosphate 3- 97.5 0.011 2.5E-07 55.8 18.7 153 166-369 12-219 (223)
205 PRK06801 hypothetical protein; 97.5 0.043 9.2E-07 53.8 23.0 107 268-379 156-283 (286)
206 PRK08072 nicotinate-nucleotide 97.5 0.001 2.2E-08 64.8 11.6 88 249-347 176-264 (277)
207 PLN02617 imidazole glycerol ph 97.5 0.00078 1.7E-08 71.4 11.5 47 301-349 471-518 (538)
208 COG0036 Rpe Pentose-5-phosphat 97.5 0.011 2.3E-07 55.4 17.6 153 166-369 12-217 (220)
209 PRK01362 putative translaldola 97.5 0.033 7.1E-07 52.3 20.9 100 249-352 92-194 (214)
210 PRK08385 nicotinate-nucleotide 97.5 0.0012 2.6E-08 64.2 11.6 149 171-347 106-263 (278)
211 PRK13585 1-(5-phosphoribosyl)- 97.5 0.00067 1.5E-08 64.4 9.5 75 270-347 35-109 (241)
212 TIGR03572 WbuZ glycosyl amidat 97.4 0.00085 1.8E-08 63.4 10.0 76 270-348 33-108 (232)
213 TIGR01949 AroFGH_arch predicte 97.4 0.0015 3.3E-08 62.9 11.8 87 251-348 128-232 (258)
214 KOG1606 Stationary phase-induc 97.4 0.0035 7.6E-08 57.8 13.3 35 313-347 206-242 (296)
215 PF01729 QRPTase_C: Quinolinat 97.4 0.0014 3E-08 59.3 10.3 89 249-348 68-160 (169)
216 PRK04128 1-(5-phosphoribosyl)- 97.4 0.0008 1.7E-08 63.8 9.1 75 269-347 31-106 (228)
217 COG2022 ThiG Uncharacterized e 97.4 0.0012 2.5E-08 61.9 9.9 77 268-348 139-216 (262)
218 TIGR00007 phosphoribosylformim 97.4 0.002 4.4E-08 60.7 11.8 75 271-348 32-106 (230)
219 PF09370 TIM-br_sig_trns: TIM- 97.4 0.0062 1.4E-07 58.4 14.7 196 105-346 14-249 (268)
220 PRK13587 1-(5-phosphoribosyl)- 97.4 0.0011 2.4E-08 63.0 9.7 76 269-347 32-109 (234)
221 PRK12653 fructose-6-phosphate 97.4 0.057 1.2E-06 50.9 21.0 100 249-352 94-196 (220)
222 PRK05581 ribulose-phosphate 3- 97.3 0.016 3.4E-07 54.0 17.2 97 250-348 101-203 (220)
223 PF02581 TMP-TENI: Thiamine mo 97.3 0.0018 4E-08 58.8 10.5 77 266-345 101-179 (180)
224 PRK06096 molybdenum transport 97.3 0.013 2.7E-07 57.4 16.9 86 249-345 178-266 (284)
225 TIGR01334 modD putative molybd 97.3 0.013 2.8E-07 57.2 16.8 86 249-346 177-266 (277)
226 PRK12656 fructose-6-phosphate 97.3 0.062 1.3E-06 50.7 20.9 99 249-351 96-197 (222)
227 PRK12655 fructose-6-phosphate 97.3 0.048 1E-06 51.4 20.0 112 249-364 94-210 (220)
228 TIGR02129 hisA_euk phosphoribo 97.3 0.00086 1.9E-08 64.3 8.3 69 270-348 41-109 (253)
229 PRK13397 3-deoxy-7-phosphohept 97.3 0.026 5.6E-07 54.1 18.3 201 94-345 3-221 (250)
230 PRK13307 bifunctional formalde 97.3 0.016 3.6E-07 59.0 17.9 184 104-347 170-362 (391)
231 COG0107 HisF Imidazoleglycerol 97.3 0.0017 3.6E-08 60.9 9.4 76 270-348 33-108 (256)
232 PRK01033 imidazole glycerol ph 97.3 0.0029 6.2E-08 61.1 11.5 76 270-348 33-108 (258)
233 TIGR02129 hisA_euk phosphoribo 97.3 0.0023 4.9E-08 61.4 10.6 99 247-347 64-236 (253)
234 PRK04169 geranylgeranylglycery 97.2 0.0018 4E-08 61.4 9.5 66 278-348 152-218 (232)
235 PRK06559 nicotinate-nucleotide 97.2 0.0037 8.1E-08 61.1 11.6 87 249-347 185-273 (290)
236 PRK09722 allulose-6-phosphate 97.2 0.053 1.1E-06 51.4 19.0 120 246-370 46-220 (229)
237 PRK06106 nicotinate-nucleotide 97.2 0.0041 8.8E-08 60.6 11.7 87 249-347 182-270 (281)
238 PF04131 NanE: Putative N-acet 97.2 0.0039 8.4E-08 57.0 10.7 89 247-343 20-119 (192)
239 PRK12376 putative translaldola 97.2 0.13 2.9E-06 48.9 21.3 100 248-351 102-207 (236)
240 TIGR01182 eda Entner-Doudoroff 97.2 0.0029 6.4E-08 58.9 9.8 81 247-342 46-127 (204)
241 PF00977 His_biosynth: Histidi 97.1 0.0023 5.1E-08 60.6 9.3 75 271-348 33-107 (229)
242 cd04723 HisA_HisF Phosphoribos 97.1 0.0023 5E-08 60.8 9.2 74 270-347 38-111 (233)
243 PRK08185 hypothetical protein; 97.1 0.19 4.1E-06 49.2 22.5 109 268-379 149-277 (283)
244 PRK09016 quinolinate phosphori 97.1 0.0041 8.8E-08 61.0 10.9 88 249-348 197-285 (296)
245 PRK07998 gatY putative fructos 97.1 0.073 1.6E-06 52.0 19.2 107 268-379 153-278 (283)
246 cd04727 pdxS PdxS is a subunit 97.1 0.049 1.1E-06 52.8 17.6 86 247-343 53-139 (283)
247 PRK07896 nicotinate-nucleotide 97.1 0.0051 1.1E-07 60.2 10.9 87 249-347 188-278 (289)
248 PRK12595 bifunctional 3-deoxy- 97.1 0.093 2E-06 53.1 20.3 206 92-346 102-325 (360)
249 PRK08005 epimerase; Validated 97.0 0.05 1.1E-06 51.0 17.0 136 166-347 9-195 (210)
250 TIGR01769 GGGP geranylgeranylg 97.0 0.0036 7.7E-08 58.4 9.1 66 273-343 140-205 (205)
251 PRK03512 thiamine-phosphate py 97.0 0.013 2.9E-07 54.8 12.9 80 267-348 109-191 (211)
252 PRK06543 nicotinate-nucleotide 97.0 0.0073 1.6E-07 58.9 11.3 88 249-348 181-270 (281)
253 cd02812 PcrB_like PcrB_like pr 97.0 0.0037 8.1E-08 58.8 8.8 69 273-348 141-209 (219)
254 PRK06978 nicotinate-nucleotide 97.0 0.008 1.7E-07 58.8 11.4 88 249-348 194-282 (294)
255 PRK13586 1-(5-phosphoribosyl)- 97.0 0.008 1.7E-07 57.1 11.1 75 270-348 33-107 (232)
256 PLN02898 HMP-P kinase/thiamin- 96.9 0.01 2.2E-07 62.6 12.6 111 252-371 381-497 (502)
257 TIGR00343 pyridoxal 5'-phospha 96.9 0.028 6E-07 54.5 14.2 85 247-342 55-140 (287)
258 PRK11750 gltB glutamate syntha 96.9 0.0069 1.5E-07 70.1 11.4 121 272-392 602-736 (1485)
259 TIGR01768 GGGP-family geranylg 96.9 0.0066 1.4E-07 57.2 9.4 66 279-348 148-213 (223)
260 cd00947 TBP_aldolase_IIB Tagat 96.8 0.28 6E-06 47.9 20.8 109 268-378 148-274 (276)
261 PRK08227 autoinducer 2 aldolas 96.8 0.013 2.9E-07 56.6 11.6 82 251-346 132-229 (264)
262 PF00834 Ribul_P_3_epim: Ribul 96.8 0.029 6.3E-07 52.2 13.5 137 166-347 8-198 (201)
263 TIGR02134 transald_staph trans 96.8 0.33 7.1E-06 46.3 20.7 177 123-351 13-207 (236)
264 PRK12290 thiE thiamine-phospha 96.8 0.017 3.7E-07 59.4 12.7 96 252-348 291-397 (437)
265 PRK14114 1-(5-phosphoribosyl)- 96.8 0.0069 1.5E-07 57.9 9.4 73 271-347 34-106 (241)
266 cd04728 ThiG Thiazole synthase 96.8 0.008 1.7E-07 57.1 9.5 106 158-287 91-204 (248)
267 PF01884 PcrB: PcrB family; I 96.8 0.009 1.9E-07 56.5 9.6 66 278-348 151-216 (230)
268 PRK13813 orotidine 5'-phosphat 96.8 0.0076 1.6E-07 56.2 9.0 118 246-370 42-213 (215)
269 PRK06552 keto-hydroxyglutarate 96.7 0.011 2.4E-07 55.5 9.8 81 247-342 51-135 (213)
270 cd00381 IMPDH IMPDH: The catal 96.7 0.016 3.4E-07 57.9 11.3 67 271-343 97-163 (325)
271 PLN02716 nicotinate-nucleotide 96.7 0.019 4.2E-07 56.5 11.4 94 249-347 188-294 (308)
272 PRK00208 thiG thiazole synthas 96.7 0.013 2.8E-07 55.8 9.8 107 157-287 90-204 (250)
273 PRK08999 hypothetical protein; 96.6 0.015 3.3E-07 57.2 10.6 77 267-346 233-311 (312)
274 TIGR00259 thylakoid_BtpA membr 96.6 0.015 3.3E-07 55.9 10.2 70 271-347 161-231 (257)
275 TIGR01919 hisA-trpF 1-(5-phosp 96.6 0.012 2.6E-07 56.3 9.5 72 272-347 36-107 (243)
276 cd00452 KDPG_aldolase KDPG and 96.6 0.018 3.9E-07 52.8 10.2 82 247-343 42-124 (190)
277 PLN02446 (5-phosphoribosyl)-5- 96.6 0.01 2.2E-07 57.3 8.7 71 270-348 46-116 (262)
278 PRK09195 gatY tagatose-bisphos 96.5 0.71 1.5E-05 45.3 21.2 109 268-379 155-281 (284)
279 PF01081 Aldolase: KDPG and KH 96.5 0.019 4.1E-07 53.2 9.7 82 247-343 46-128 (196)
280 PF04898 Glu_syn_central: Glut 96.5 0.038 8.3E-07 53.9 12.0 120 271-390 146-280 (287)
281 PLN02591 tryptophan synthase 96.4 0.021 4.6E-07 54.9 9.8 40 249-288 179-219 (250)
282 PF03437 BtpA: BtpA family; I 96.4 0.11 2.3E-06 50.1 14.5 69 271-347 162-231 (254)
283 cd00408 DHDPS-like Dihydrodipi 96.4 0.5 1.1E-05 45.8 19.5 181 107-347 3-205 (281)
284 PRK06015 keto-hydroxyglutarate 96.4 0.023 4.9E-07 52.9 9.5 81 247-342 42-123 (201)
285 KOG2335 tRNA-dihydrouridine sy 96.4 0.048 1E-06 54.4 12.0 91 155-287 140-233 (358)
286 PRK12738 kbaY tagatose-bisphos 96.4 1.2 2.5E-05 43.8 22.6 109 268-379 155-281 (286)
287 PRK03170 dihydrodipicolinate s 96.3 0.51 1.1E-05 46.1 19.3 183 106-348 6-210 (292)
288 PRK01130 N-acetylmannosamine-6 96.3 0.14 3.1E-06 47.8 14.8 91 248-343 45-146 (221)
289 PRK06843 inosine 5-monophospha 96.3 0.015 3.3E-07 59.4 8.6 67 271-343 156-222 (404)
290 PRK06852 aldolase; Validated 96.3 0.08 1.7E-06 52.2 13.3 92 251-347 159-269 (304)
291 PF03932 CutC: CutC family; I 96.3 0.068 1.5E-06 49.7 12.0 124 164-340 66-196 (201)
292 PRK07709 fructose-bisphosphate 96.3 1.2 2.6E-05 43.6 21.2 107 268-379 156-282 (285)
293 PRK09250 fructose-bisphosphate 96.2 0.048 1E-06 54.5 11.4 75 273-347 223-322 (348)
294 COG0157 NadC Nicotinate-nucleo 96.2 0.05 1.1E-06 52.6 11.1 90 247-347 173-266 (280)
295 PF01116 F_bP_aldolase: Fructo 96.2 1.4 2.9E-05 43.4 21.3 110 268-379 155-284 (287)
296 cd04729 NanE N-acetylmannosami 96.2 0.21 4.5E-06 46.7 15.2 90 249-343 50-150 (219)
297 PRK08091 ribulose-phosphate 3- 96.2 0.27 5.8E-06 46.6 15.8 95 249-346 107-210 (228)
298 KOG4201 Anthranilate synthase 96.2 0.04 8.8E-07 51.2 9.8 98 247-349 174-272 (289)
299 PRK09140 2-dehydro-3-deoxy-6-p 96.2 0.049 1.1E-06 50.8 10.7 80 248-342 49-130 (206)
300 TIGR00167 cbbA ketose-bisphosp 96.2 1.4 3.1E-05 43.2 22.9 108 268-379 158-285 (288)
301 PF01207 Dus: Dihydrouridine s 96.2 0.034 7.3E-07 55.1 10.0 90 154-287 120-213 (309)
302 CHL00200 trpA tryptophan synth 96.1 0.11 2.3E-06 50.4 12.8 41 248-288 191-232 (263)
303 PRK14057 epimerase; Provisiona 96.1 0.38 8.2E-06 46.3 16.2 78 268-347 143-225 (254)
304 TIGR02320 PEP_mutase phosphoen 96.0 0.91 2E-05 44.5 19.0 194 108-349 10-246 (285)
305 TIGR00736 nifR3_rel_arch TIM-b 96.0 0.06 1.3E-06 51.2 10.3 84 157-287 135-220 (231)
306 TIGR03569 NeuB_NnaB N-acetylne 96.0 1 2.2E-05 45.0 19.5 233 107-379 1-261 (329)
307 COG0159 TrpA Tryptophan syntha 95.9 0.047 1E-06 52.7 9.3 40 247-287 193-233 (265)
308 PLN02617 imidazole glycerol ph 95.9 0.037 8.1E-07 58.8 9.4 76 271-348 271-359 (538)
309 TIGR01302 IMP_dehydrog inosine 95.9 0.03 6.6E-07 58.3 8.6 68 270-343 226-293 (450)
310 PRK05835 fructose-bisphosphate 95.9 2.1 4.5E-05 42.4 23.1 110 268-379 155-304 (307)
311 PRK12858 tagatose 1,6-diphosph 95.9 0.06 1.3E-06 54.0 10.3 73 273-348 190-281 (340)
312 PRK05718 keto-hydroxyglutarate 95.9 0.071 1.5E-06 50.0 10.1 81 247-342 53-134 (212)
313 TIGR01858 tag_bisphos_ald clas 95.9 2 4.3E-05 42.1 21.4 109 268-379 153-279 (282)
314 PRK09517 multifunctional thiam 95.8 0.11 2.5E-06 57.6 13.3 97 267-370 108-215 (755)
315 TIGR02313 HpaI-NOT-DapA 2,4-di 95.8 1.4 3E-05 43.3 19.6 182 106-347 5-210 (294)
316 PRK07114 keto-hydroxyglutarate 95.8 0.052 1.1E-06 51.2 9.0 80 248-342 54-138 (222)
317 PTZ00314 inosine-5'-monophosph 95.8 0.039 8.5E-07 58.2 9.1 252 76-343 19-310 (495)
318 PRK13306 ulaD 3-keto-L-gulonat 95.8 0.042 9.2E-07 51.6 8.4 97 268-371 117-213 (216)
319 TIGR03249 KdgD 5-dehydro-4-deo 95.8 2.1 4.6E-05 41.9 21.1 184 106-347 10-213 (296)
320 COG0106 HisA Phosphoribosylfor 95.8 0.071 1.5E-06 50.6 9.8 73 270-346 34-107 (241)
321 cd02810 DHOD_DHPD_FMN Dihydroo 95.7 0.13 2.7E-06 50.2 11.7 155 105-287 98-272 (289)
322 cd00950 DHDPS Dihydrodipicolin 95.7 1.4 3E-05 42.8 19.0 183 106-348 5-209 (284)
323 COG3010 NanE Putative N-acetyl 95.7 0.29 6.2E-06 45.4 12.9 88 247-342 54-153 (229)
324 PLN02274 inosine-5'-monophosph 95.7 0.046 9.9E-07 57.8 8.9 252 76-343 23-317 (505)
325 cd03319 L-Ala-DL-Glu_epimerase 95.7 0.45 9.7E-06 47.0 15.5 127 160-346 127-261 (316)
326 PRK07107 inosine 5-monophospha 95.6 0.093 2E-06 55.4 11.1 254 76-343 11-312 (502)
327 PLN02417 dihydrodipicolinate s 95.6 0.1 2.2E-06 50.9 10.5 92 273-367 28-124 (280)
328 TIGR00674 dapA dihydrodipicoli 95.6 1.9 4.1E-05 42.0 19.4 183 106-348 3-207 (285)
329 cd00331 IGPS Indole-3-glycerol 95.6 0.054 1.2E-06 50.5 8.2 71 270-346 34-104 (217)
330 cd04739 DHOD_like Dihydroorota 95.6 0.32 6.9E-06 48.5 14.1 187 105-334 99-304 (325)
331 TIGR02313 HpaI-NOT-DapA 2,4-di 95.5 0.11 2.4E-06 51.1 10.6 91 273-368 27-124 (294)
332 PRK03620 5-dehydro-4-deoxygluc 95.5 0.11 2.3E-06 51.4 10.5 92 273-368 34-130 (303)
333 PF05690 ThiG: Thiazole biosyn 95.5 0.047 1E-06 51.6 7.4 41 247-287 163-204 (247)
334 cd00951 KDGDH 5-dehydro-4-deox 95.5 0.11 2.4E-06 50.9 10.4 91 273-367 27-122 (289)
335 COG0135 TrpF Phosphoribosylant 95.5 0.73 1.6E-05 43.1 15.2 92 244-344 83-184 (208)
336 PRK03620 5-dehydro-4-deoxygluc 95.5 2.9 6.2E-05 41.2 20.7 183 106-347 12-215 (303)
337 PRK11840 bifunctional sulfur c 95.4 0.06 1.3E-06 53.3 8.2 107 157-287 164-278 (326)
338 PRK11572 copper homeostasis pr 95.4 0.26 5.7E-06 47.2 12.3 126 164-343 67-198 (248)
339 cd00408 DHDPS-like Dihydrodipi 95.4 0.15 3.3E-06 49.4 11.0 92 273-367 24-120 (281)
340 PF00478 IMPDH: IMP dehydrogen 95.4 0.06 1.3E-06 54.2 8.2 67 270-343 110-177 (352)
341 PRK12737 gatY tagatose-bisphos 95.4 3.1 6.7E-05 40.8 21.4 107 268-379 155-281 (284)
342 COG1830 FbaB DhnA-type fructos 95.4 0.24 5.3E-06 47.7 11.8 64 273-347 172-241 (265)
343 COG3142 CutC Uncharacterized p 95.4 0.36 7.8E-06 45.5 12.6 123 164-339 67-196 (241)
344 PRK10550 tRNA-dihydrouridine s 95.3 0.23 5.1E-06 49.3 12.1 88 157-287 134-224 (312)
345 PF00290 Trp_syntA: Tryptophan 95.3 0.15 3.2E-06 49.3 10.3 39 248-287 187-226 (259)
346 cd00952 CHBPH_aldolase Trans-o 95.3 0.14 3E-06 50.7 10.3 92 273-367 35-131 (309)
347 TIGR00262 trpA tryptophan synt 95.2 0.24 5.2E-06 47.8 11.6 41 247-287 186-227 (256)
348 cd04726 KGPDC_HPS 3-Keto-L-gul 95.2 0.49 1.1E-05 43.2 13.3 87 248-343 41-133 (202)
349 PRK07807 inosine 5-monophospha 95.2 0.081 1.8E-06 55.6 8.9 250 76-343 14-296 (479)
350 COG0042 tRNA-dihydrouridine sy 95.2 0.16 3.4E-06 50.7 10.6 42 246-287 184-228 (323)
351 COG2022 ThiG Uncharacterized e 95.2 0.16 3.5E-06 47.8 9.7 96 168-287 115-211 (262)
352 TIGR01305 GMP_reduct_1 guanosi 95.2 0.17 3.7E-06 50.4 10.5 95 243-343 75-178 (343)
353 PRK08610 fructose-bisphosphate 95.2 3.5 7.7E-05 40.4 21.4 107 268-379 156-282 (286)
354 TIGR00734 hisAF_rel hisA/hisF 95.2 0.1 2.2E-06 49.2 8.6 72 270-347 39-112 (221)
355 PRK12857 fructose-1,6-bisphosp 95.2 3.5 7.7E-05 40.4 23.2 107 268-379 155-281 (284)
356 cd00951 KDGDH 5-dehydro-4-deox 95.2 3.5 7.6E-05 40.3 20.9 184 106-348 5-209 (289)
357 COG0329 DapA Dihydrodipicolina 95.1 0.19 4.2E-06 49.5 10.7 90 273-367 31-127 (299)
358 PRK07565 dihydroorotate dehydr 95.1 0.24 5.3E-06 49.5 11.6 94 249-344 91-198 (334)
359 PRK05286 dihydroorotate dehydr 95.1 0.15 3.3E-06 51.3 10.0 104 157-287 212-318 (344)
360 CHL00162 thiG thiamin biosynth 95.0 0.073 1.6E-06 50.9 7.1 41 247-287 177-218 (267)
361 PRK08673 3-deoxy-7-phosphohept 95.0 1.3 2.7E-05 44.6 16.2 126 248-377 190-333 (335)
362 TIGR03249 KdgD 5-dehydro-4-deo 94.9 0.2 4.3E-06 49.2 10.3 92 273-368 32-128 (296)
363 PRK13396 3-deoxy-7-phosphohept 94.9 2 4.4E-05 43.3 17.5 128 248-378 198-343 (352)
364 TIGR00683 nanA N-acetylneurami 94.8 0.23 5.1E-06 48.6 10.5 92 273-367 27-124 (290)
365 PRK05096 guanosine 5'-monophos 94.8 0.24 5.2E-06 49.4 10.4 66 271-343 111-179 (346)
366 TIGR01303 IMP_DH_rel_1 IMP deh 94.8 0.13 2.9E-06 53.9 9.0 248 76-344 13-295 (475)
367 PRK05567 inosine 5'-monophosph 94.8 0.19 4.2E-06 52.9 10.3 251 76-343 10-297 (486)
368 PF00701 DHDPS: Dihydrodipicol 94.8 2.5 5.3E-05 41.2 17.4 183 106-348 6-210 (289)
369 PRK09196 fructose-1,6-bisphosp 94.8 4.8 0.0001 40.6 19.5 112 268-380 173-327 (347)
370 PRK13957 indole-3-glycerol-pho 94.8 0.18 3.8E-06 48.4 9.0 70 271-346 65-134 (247)
371 PRK13111 trpA tryptophan synth 94.7 0.61 1.3E-05 45.1 12.8 41 247-288 188-229 (258)
372 TIGR01521 FruBisAldo_II_B fruc 94.7 4.8 0.0001 40.5 19.4 112 268-380 171-325 (347)
373 TIGR01306 GMP_reduct_2 guanosi 94.7 0.34 7.4E-06 48.3 11.2 77 260-343 83-165 (321)
374 TIGR00737 nifR3_yhdG putative 94.7 0.32 7E-06 48.3 11.2 41 246-286 179-221 (319)
375 cd00516 PRTase_typeII Phosphor 94.7 0.33 7.1E-06 47.1 11.1 92 249-348 170-272 (281)
376 PRK10415 tRNA-dihydrouridine s 94.6 0.36 7.9E-06 48.1 11.4 42 246-287 181-224 (321)
377 cd00954 NAL N-Acetylneuraminic 94.6 0.29 6.3E-06 47.8 10.4 92 273-367 27-124 (288)
378 PRK00230 orotidine 5'-phosphat 94.5 0.098 2.1E-06 49.6 6.8 78 272-370 140-228 (230)
379 PF00701 DHDPS: Dihydrodipicol 94.5 0.24 5.3E-06 48.3 9.7 91 272-365 27-122 (289)
380 PRK04147 N-acetylneuraminate l 94.5 5 0.00011 39.2 19.0 179 106-345 8-209 (293)
381 COG4981 Enoyl reductase domain 94.5 1.1 2.3E-05 47.3 14.3 57 82-143 10-67 (717)
382 cd00950 DHDPS Dihydrodipicolin 94.5 0.32 6.9E-06 47.3 10.4 92 273-367 27-123 (284)
383 TIGR00674 dapA dihydrodipicoli 94.5 0.34 7.4E-06 47.2 10.6 92 273-367 25-121 (285)
384 cd01571 NAPRTase_B Nicotinate 94.5 0.25 5.3E-06 48.9 9.6 94 249-348 172-278 (302)
385 cd00945 Aldolase_Class_I Class 94.3 0.52 1.1E-05 42.4 10.9 82 272-367 18-108 (201)
386 PRK04147 N-acetylneuraminate l 94.3 0.37 8.1E-06 47.2 10.5 90 273-365 30-125 (293)
387 COG2876 AroA 3-deoxy-D-arabino 94.3 4.4 9.5E-05 39.2 17.1 94 248-344 142-250 (286)
388 PRK07084 fructose-bisphosphate 94.2 5.9 0.00013 39.5 18.7 81 268-349 164-274 (321)
389 PF04309 G3P_antiterm: Glycero 94.2 0.058 1.2E-06 49.0 4.1 138 167-348 28-174 (175)
390 cd04740 DHOD_1B_like Dihydroor 94.1 0.42 9.2E-06 46.7 10.5 153 105-287 89-260 (296)
391 TIGR01037 pyrD_sub1_fam dihydr 94.1 0.29 6.2E-06 48.1 9.3 106 156-287 157-263 (300)
392 TIGR00742 yjbN tRNA dihydrouri 94.1 0.54 1.2E-05 46.8 11.3 95 156-287 123-223 (318)
393 cd02809 alpha_hydroxyacid_oxid 94.1 0.48 1E-05 46.6 10.8 87 252-343 108-200 (299)
394 COG1646 Predicted phosphate-bi 94.1 0.23 5.1E-06 46.8 8.0 62 279-347 163-224 (240)
395 PRK03170 dihydrodipicolinate s 94.1 0.42 9.2E-06 46.7 10.4 92 273-367 28-124 (292)
396 COG0329 DapA Dihydrodipicolina 94.1 6.7 0.00015 38.7 22.0 181 106-345 9-211 (299)
397 PRK07259 dihydroorotate dehydr 94.0 0.49 1.1E-05 46.4 10.7 154 104-287 90-263 (301)
398 cd00954 NAL N-Acetylneuraminic 93.9 6.7 0.00015 38.2 19.4 180 106-345 5-208 (288)
399 PLN02979 glycolate oxidase 93.9 0.46 1E-05 48.0 10.3 92 247-344 111-252 (366)
400 COG1954 GlpP Glycerol-3-phosph 93.9 1 2.2E-05 40.6 11.3 109 124-289 65-175 (181)
401 cd02940 DHPD_FMN Dihydropyrimi 93.8 0.37 8E-06 47.4 9.4 111 156-287 168-281 (299)
402 PRK05458 guanosine 5'-monophos 93.8 0.49 1.1E-05 47.2 10.2 67 271-343 100-168 (326)
403 cd04738 DHOD_2_like Dihydrooro 93.8 0.22 4.8E-06 49.7 7.8 104 157-287 203-309 (327)
404 PRK08318 dihydropyrimidine deh 93.8 0.5 1.1E-05 48.7 10.7 111 156-287 168-282 (420)
405 cd03316 MR_like Mandelate race 93.7 0.79 1.7E-05 45.9 11.9 124 168-344 139-271 (357)
406 cd02801 DUS_like_FMN Dihydrour 93.7 0.81 1.8E-05 42.7 11.1 42 246-287 170-213 (231)
407 TIGR02317 prpB methylisocitrat 93.6 0.35 7.6E-06 47.4 8.6 83 259-343 12-108 (285)
408 PRK09427 bifunctional indole-3 93.5 1 2.2E-05 47.1 12.4 83 249-342 198-283 (454)
409 PRK05581 ribulose-phosphate 3- 93.5 2.8 6E-05 38.8 14.3 126 166-344 12-139 (220)
410 PLN02535 glycolate oxidase 93.4 0.61 1.3E-05 47.3 10.4 90 251-343 115-251 (364)
411 PRK11320 prpB 2-methylisocitra 93.4 0.38 8.3E-06 47.3 8.6 82 259-342 16-112 (292)
412 PLN02858 fructose-bisphosphate 93.3 18 0.00039 43.2 23.5 111 268-379 1250-1375(1378)
413 cd00377 ICL_PEPM Members of th 93.3 0.53 1.1E-05 45.0 9.2 98 249-346 59-183 (243)
414 cd02911 arch_FMN Archeal FMN-b 93.3 0.88 1.9E-05 43.2 10.6 39 247-287 181-220 (233)
415 cd03315 MLE_like Muconate lact 93.3 2.3 5E-05 40.8 13.7 88 247-344 115-211 (265)
416 TIGR03586 PseI pseudaminic aci 93.3 9.9 0.00021 38.1 21.5 125 247-379 123-260 (327)
417 cd06557 KPHMT-like Ketopantoat 93.2 3.2 7E-05 40.0 14.5 47 271-329 162-209 (254)
418 TIGR03151 enACPred_II putative 93.2 1.8 3.9E-05 42.9 13.1 42 247-288 149-191 (307)
419 PLN02493 probable peroxisomal 93.2 0.68 1.5E-05 47.0 10.2 92 247-344 112-253 (367)
420 cd06556 ICL_KPHMT Members of t 93.2 0.67 1.5E-05 44.3 9.7 85 259-343 11-109 (240)
421 PF13714 PEP_mutase: Phosphoen 93.1 0.62 1.3E-05 44.5 9.3 84 259-344 8-106 (238)
422 PF03932 CutC: CutC family; I 93.0 0.68 1.5E-05 43.1 9.1 73 268-344 8-93 (201)
423 TIGR02319 CPEP_Pphonmut carbox 92.9 10 0.00022 37.4 18.7 67 273-350 171-240 (294)
424 KOG0134 NADH:flavin oxidoreduc 92.7 1.4 3E-05 44.9 11.6 102 245-349 225-354 (400)
425 cd04741 DHOD_1A_like Dihydroor 92.7 0.83 1.8E-05 44.9 9.9 111 156-287 157-272 (294)
426 TIGR02319 CPEP_Pphonmut carbox 92.6 0.51 1.1E-05 46.5 8.2 83 259-343 15-112 (294)
427 cd00439 Transaldolase Transald 92.6 1.9 4.1E-05 41.5 12.0 98 249-350 130-241 (252)
428 COG2089 SpsE Sialic acid synth 92.4 6.2 0.00013 39.3 15.2 208 96-340 1-232 (347)
429 TIGR03569 NeuB_NnaB N-acetylne 92.4 3.1 6.6E-05 41.7 13.5 139 166-334 12-153 (329)
430 PLN02411 12-oxophytodienoate r 92.3 4 8.7E-05 41.8 14.6 92 96-193 15-109 (391)
431 PRK11815 tRNA-dihydrouridine s 92.2 1.5 3.3E-05 43.9 11.3 43 244-287 189-233 (333)
432 PRK07455 keto-hydroxyglutarate 92.2 1.2 2.6E-05 40.8 9.7 79 249-342 52-131 (187)
433 PRK00311 panB 3-methyl-2-oxobu 92.2 5 0.00011 38.9 14.4 39 271-321 165-203 (264)
434 PRK13398 3-deoxy-7-phosphohept 92.2 1.9 4.1E-05 41.8 11.6 96 248-346 124-234 (266)
435 TIGR01036 pyrD_sub2 dihydrooro 92.2 1.9 4.2E-05 43.2 11.9 104 157-287 211-317 (335)
436 PRK13397 3-deoxy-7-phosphohept 92.1 10 0.00022 36.6 16.1 66 246-311 171-247 (250)
437 TIGR01769 GGGP geranylgeranylg 92.1 1.3 2.9E-05 41.2 9.9 40 247-286 164-204 (205)
438 cd00957 Transaldolase_TalAB Tr 92.1 1.2 2.5E-05 44.3 10.1 100 247-351 134-251 (313)
439 TIGR01361 DAHP_synth_Bsub phos 92.1 2.3 5.1E-05 41.1 12.0 96 248-346 122-232 (260)
440 COG0176 MipB Transaldolase [Ca 92.0 4.1 8.8E-05 38.9 13.2 101 249-353 106-210 (239)
441 TIGR02317 prpB methylisocitrat 92.0 13 0.00029 36.4 19.2 187 108-349 14-235 (285)
442 PRK11572 copper homeostasis pr 92.0 0.9 1.9E-05 43.6 8.8 73 268-344 9-94 (248)
443 cd02922 FCB2_FMN Flavocytochro 91.8 1.2 2.7E-05 44.8 10.0 82 260-344 118-242 (344)
444 KOG4175 Tryptophan synthase al 91.8 8.9 0.00019 35.7 14.5 44 303-348 197-240 (268)
445 COG0434 SgcQ Predicted TIM-bar 91.6 0.46 1E-05 45.0 6.2 64 276-347 173-236 (263)
446 PF04309 G3P_antiterm: Glycero 91.6 0.43 9.2E-06 43.4 5.9 41 248-288 129-170 (175)
447 PRK00043 thiE thiamine-phospha 91.6 9.9 0.00021 34.7 15.3 42 246-287 146-188 (212)
448 KOG3111 D-ribulose-5-phosphate 91.5 1.9 4.2E-05 39.7 9.8 112 249-372 103-220 (224)
449 cd06557 KPHMT-like Ketopantoat 91.4 1.5 3.2E-05 42.3 9.7 84 259-342 11-110 (254)
450 PRK13523 NADPH dehydrogenase N 91.3 1.6 3.5E-05 43.8 10.3 95 151-286 202-304 (337)
451 PRK13125 trpA tryptophan synth 91.3 11 0.00024 35.9 15.6 88 166-286 14-107 (244)
452 PRK00311 panB 3-methyl-2-oxobu 91.3 2.3 5E-05 41.2 11.0 94 248-342 4-113 (264)
453 PTZ00411 transaldolase-like pr 91.0 2.3 5.1E-05 42.6 10.9 95 251-351 153-263 (333)
454 COG2513 PrpB PEP phosphonomuta 90.9 1.2 2.5E-05 43.6 8.4 84 259-344 17-114 (289)
455 PRK12595 bifunctional 3-deoxy- 90.9 6 0.00013 40.1 13.9 159 111-290 159-325 (360)
456 TIGR02321 Pphn_pyruv_hyd phosp 90.8 1.4 3.1E-05 43.3 9.1 83 259-343 14-110 (290)
457 COG1954 GlpP Glycerol-3-phosph 90.8 1.1 2.4E-05 40.4 7.5 87 249-347 86-177 (181)
458 PRK12346 transaldolase A; Prov 90.7 2.7 5.8E-05 41.8 11.0 100 247-351 135-252 (316)
459 COG0352 ThiE Thiamine monophos 90.7 10 0.00022 35.6 14.2 44 244-287 143-186 (211)
460 cd00377 ICL_PEPM Members of th 90.7 1.3 2.7E-05 42.4 8.4 82 259-342 8-103 (243)
461 TIGR00874 talAB transaldolase. 90.6 3 6.6E-05 41.5 11.2 100 247-351 134-251 (317)
462 cd03332 LMO_FMN L-Lactate 2-mo 90.6 2.7 5.8E-05 43.0 11.1 42 300-344 241-282 (383)
463 cd06556 ICL_KPHMT Members of t 90.5 11 0.00024 36.0 14.7 39 271-321 160-198 (240)
464 COG2070 Dioxygenases related t 90.4 4.8 0.0001 40.4 12.7 168 57-287 40-213 (336)
465 cd03174 DRE_TIM_metallolyase D 90.2 12 0.00026 35.4 14.9 154 168-369 17-188 (265)
466 PRK12457 2-dehydro-3-deoxyphos 90.2 2.9 6.3E-05 40.7 10.4 95 248-344 120-238 (281)
467 cd04737 LOX_like_FMN L-Lactate 90.1 2.2 4.8E-05 43.1 10.0 90 247-342 114-248 (351)
468 TIGR02708 L_lactate_ox L-lacta 90.1 3.1 6.7E-05 42.3 11.0 83 259-344 132-257 (367)
469 TIGR03128 RuMP_HxlA 3-hexulose 90.1 3.6 7.8E-05 37.8 10.8 89 247-344 39-134 (206)
470 cd02812 PcrB_like PcrB_like pr 89.9 0.66 1.4E-05 43.7 5.7 42 247-288 162-205 (219)
471 TIGR01768 GGGP-family geranylg 89.8 0.7 1.5E-05 43.6 5.8 42 247-288 166-209 (223)
472 PRK00366 ispG 4-hydroxy-3-meth 89.8 3.3 7.2E-05 41.6 10.7 69 167-286 39-107 (360)
473 TIGR03586 PseI pseudaminic aci 89.7 7.5 0.00016 38.9 13.3 82 250-342 81-166 (327)
474 PRK00278 trpC indole-3-glycero 89.6 3.6 7.7E-05 39.7 10.7 71 270-346 73-143 (260)
475 PRK13396 3-deoxy-7-phosphohept 89.6 4.7 0.0001 40.7 11.8 46 244-289 256-308 (352)
476 cd02933 OYE_like_FMN Old yello 89.5 4.8 0.0001 40.4 11.9 41 246-286 272-313 (338)
477 PRK01222 N-(5'-phosphoribosyl) 89.4 18 0.0004 33.6 19.4 88 248-345 89-185 (210)
478 cd00564 TMP_TenI Thiamine mono 89.3 13 0.00029 33.0 13.7 42 246-287 137-178 (196)
479 PRK12309 transaldolase/EF-hand 89.2 3.3 7.2E-05 42.4 10.6 99 247-350 140-256 (391)
480 PRK11320 prpB 2-methylisocitra 89.2 24 0.00052 34.7 20.2 179 124-349 26-240 (292)
481 PRK05269 transaldolase B; Prov 89.1 4 8.7E-05 40.7 10.8 100 247-351 136-253 (318)
482 cd04734 OYE_like_3_FMN Old yel 89.0 4.6 0.0001 40.6 11.4 41 246-286 272-314 (343)
483 TIGR01361 DAHP_synth_Bsub phos 88.8 17 0.00037 35.1 14.8 45 245-289 180-231 (260)
484 KOG2550 IMP dehydrogenase/GMP 88.5 1.8 3.9E-05 44.2 7.8 66 272-343 255-320 (503)
485 PRK13307 bifunctional formalde 88.5 8.1 0.00018 39.7 12.8 89 247-344 213-307 (391)
486 COG0269 SgbH 3-hexulose-6-phos 88.4 5.7 0.00012 37.3 10.6 91 247-345 43-139 (217)
487 PF03102 NeuB: NeuB family; I 88.4 3.4 7.4E-05 39.5 9.5 74 250-334 60-133 (241)
488 TIGR00683 nanA N-acetylneurami 88.4 26 0.00057 34.2 22.1 180 106-346 5-208 (290)
489 TIGR01858 tag_bisphos_ald clas 88.4 2.4 5.2E-05 41.5 8.6 45 243-287 184-230 (282)
490 PRK04169 geranylgeranylglycery 88.3 0.95 2.1E-05 43.0 5.6 42 247-288 171-214 (232)
491 COG0800 Eda 2-keto-3-deoxy-6-p 88.3 4.3 9.3E-05 38.0 9.7 82 249-341 5-90 (211)
492 cd04733 OYE_like_2_FMN Old yel 88.3 6.5 0.00014 39.3 11.9 40 247-286 280-321 (338)
493 PRK07709 fructose-bisphosphate 88.2 2.9 6.3E-05 41.0 9.0 46 243-288 187-234 (285)
494 PF00218 IGPS: Indole-3-glycer 88.0 2.7 5.8E-05 40.6 8.5 71 271-347 72-142 (254)
495 cd02811 IDI-2_FMN Isopentenyl- 87.9 6.6 0.00014 39.2 11.6 96 247-344 99-210 (326)
496 TIGR01362 KDO8P_synth 3-deoxy- 87.7 5.2 0.00011 38.5 10.1 92 248-344 106-222 (258)
497 TIGR00222 panB 3-methyl-2-oxob 87.7 25 0.00054 34.1 14.9 132 124-321 24-202 (263)
498 PRK12737 gatY tagatose-bisphos 87.7 3.1 6.8E-05 40.8 8.9 46 243-288 186-233 (284)
499 PRK12738 kbaY tagatose-bisphos 87.6 3.3 7.3E-05 40.6 9.1 45 243-287 186-232 (286)
500 PRK13305 sgbH 3-keto-L-gulonat 87.6 0.27 5.9E-06 46.3 1.4 94 269-371 118-213 (218)
No 1
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=100.00 E-value=1.8e-90 Score=651.84 Aligned_cols=355 Identities=73% Similarity=1.135 Sum_probs=340.1
Q ss_pred CCChHHHHHHHhhhCCccccccccCcccchhhHHHhHHhhhcccccccccCCCCCCccceeecCcccCCceeeccccccc
Q 015722 38 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQK 117 (402)
Q Consensus 38 ~~~i~d~~~~A~~~l~~~~~~y~~gGa~~e~t~~~N~~~~~~~~l~pr~l~~~~~~d~st~i~G~~l~~Pi~iAPm~~~~ 117 (402)
.+|++|||+.|++.||+.+|+|+.||++|+.|+++|+++|.||.|+||+|++++.+|+||+++|.++++||+|||++++.
T Consensus 1 lv~~~dfe~~A~~~L~K~a~dyy~sgA~d~~Tl~~N~~AF~ri~~rPr~L~dVs~iD~sTtvlG~~i~~Pi~iapTa~qk 80 (363)
T KOG0538|consen 1 LVNVDDFEALAKQQLPKMAYDYYESGAEDQETLDENINAFRRILFRPRILRDVSKIDTSTTVLGQKISAPIMIAPTAMQK 80 (363)
T ss_pred CccHHHHHHHHHHhhhHHHHHHHhcCCcchhhHHHHHHHHHhhhccchhheecccccccceeccccccceeEEcchHHHh
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChhhHHHHHHHHHcCCeEEecCCccCCHHHHhhcCC-CceEEEEeecCChhHHHHHHHHHHHcCCcEEEEecCCCCC
Q 015722 118 MAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTGP-GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRL 196 (402)
Q Consensus 118 ~~~~~ge~ala~aa~~~G~~~~vs~~~~~s~eei~~~~~-~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~ 196 (402)
++|||||.+.||+|.++|++|++|+.+++|+|||++++| +..|||||++.|++.+.++++|||++||++|++|+|+|+.
T Consensus 81 ma~pdGE~~taraa~~~~~~~i~Ss~at~S~EdI~~aap~~~rwfQLYvykdr~It~~Lv~raEk~GfkAlvlTvDtP~l 160 (363)
T KOG0538|consen 81 MAHPDGELATARAAQAAGTIMILSSWATCSVEDIASAAPPGIRWFQLYVYKDRDITEQLVKRAEKAGFKALVLTVDTPRL 160 (363)
T ss_pred ccCCcccHHHHHHHHhcCCcEEEechhcCCHHHHHhhCCCCcEEEEEEecCchHHHHHHHHHHHHcCceEEEEEeccccc
Confidence 999999999999999999999999999999999999885 8899999999999999999999999999999999999999
Q ss_pred CchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCCccHHHHHHHHHccCccEEEEeccCHHHHHHH
Q 015722 197 GRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLA 276 (402)
Q Consensus 197 g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~Pv~vK~~~~~~da~~a 276 (402)
|+|+.|++|.|.+|+.++.+|+.........++..+|...+++.+.||+++|++|+|+++.|++|+++||+++.|||+.|
T Consensus 161 G~R~~D~~n~f~lp~~l~lknfe~~~~~~v~~~~~sg~~~~~~~~id~Sl~W~Di~wLr~~T~LPIvvKGilt~eDA~~A 240 (363)
T KOG0538|consen 161 GRRESDIKNKFSLPKNLTLKNFEGLKLTEVEEAGDSGLAAYVSSQIDPSLSWKDIKWLRSITKLPIVVKGVLTGEDARKA 240 (363)
T ss_pred cCchhhhhhcccCCcccccccccccccccCCcccchhhhhhhhcCCCCCCChhhhHHHHhcCcCCeEEEeecccHHHHHH
Confidence 99999999999999988888886655444445566778889998999999999999999999999999999999999999
Q ss_pred HHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHHHhhhcCChH
Q 015722 277 IQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEA 356 (402)
Q Consensus 277 ~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~~~~~~G~~ 356 (402)
.++|+++|+||||||||+|..|+++++|+|+++++.+++||+.|||||+|.|++|||+|||.+|.||||++|++++.|+.
T Consensus 241 ve~G~~GIIVSNHGgRQlD~vpAtI~~L~Evv~aV~~ri~V~lDGGVR~G~DVlKALALGAk~VfiGRP~v~gLA~~Ge~ 320 (363)
T KOG0538|consen 241 VEAGVAGIIVSNHGGRQLDYVPATIEALPEVVKAVEGRIPVFLDGGVRRGTDVLKALALGAKGVFIGRPIVWGLAAKGEA 320 (363)
T ss_pred HHhCCceEEEeCCCccccCcccchHHHHHHHHHHhcCceEEEEecCcccchHHHHHHhcccceEEecCchheeeccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCChhhhcccceecc
Q 015722 357 GVRKVLQMLRDEFELTMALSGCRSLKEITRNHIVTH 392 (402)
Q Consensus 357 gv~~~i~~l~~el~~~m~~~G~~~i~el~~~~l~~~ 392 (402)
||+++++.|++|++..|++.||.|++|+++..+...
T Consensus 321 GV~~vl~iL~~efe~tmaLsGc~sv~ei~~~~v~~~ 356 (363)
T KOG0538|consen 321 GVKKVLDILRDEFELTMALSGCRSVKEITRNHVLTE 356 (363)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCchhhhCccceeec
Confidence 999999999999999999999999999999865443
No 2
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=100.00 E-value=1.3e-83 Score=637.72 Aligned_cols=366 Identities=86% Similarity=1.280 Sum_probs=334.5
Q ss_pred CCCChHHHHHHHhhhCCccccccccCcccchhhHHHhHHhhhcccccccccCCCCCCccceeecCcccCCceeecccccc
Q 015722 37 EITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQ 116 (402)
Q Consensus 37 ~~~~i~d~~~~A~~~l~~~~~~y~~gGa~~e~t~~~N~~~~~~~~l~pr~l~~~~~~d~st~i~G~~l~~Pi~iAPm~~~ 116 (402)
.++|++|||+.||++||+.+|+|++||++||.|+++|+++|++|.|+||+|++++++||+|++||+++++||++||+|++
T Consensus 2 ~~~~i~D~e~~Ar~~lp~~~~~y~~gga~de~t~~~N~~af~r~~l~PRvLrdv~~~d~~t~~lG~~~~~Pi~iAP~g~~ 81 (367)
T PLN02493 2 EITNVTEYDAIAKQKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVSKIDMTTTVLGFKISMPIMVAPTAMQ 81 (367)
T ss_pred ccCCHHHHHHHHHHhCCHHHHHHHccCcchhHHHHHHHHHHHhCCeecccccCCCCCCCceEECCccccccceechHHHH
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChhhHHHHHHHHHcCCeEEecCCccCCHHHHhhcCCCceEEEEeecCChhHHHHHHHHHHHcCCcEEEEecCCCCC
Q 015722 117 KMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRL 196 (402)
Q Consensus 117 ~~~~~~ge~ala~aa~~~G~~~~vs~~~~~s~eei~~~~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~ 196 (402)
+++||+||+++||+|+++|+++++|+.+++++|||+++.+++.|||||+++|++.++++++||+++||++|+||||+|+.
T Consensus 82 ~l~hp~gE~a~AraA~~~gi~~~lSt~ss~slEeva~~~~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTvD~p~~ 161 (367)
T PLN02493 82 KMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRL 161 (367)
T ss_pred hhcCCchHHHHHHHHHHcCCCeeecCcccCCHHHHHhcCCCCcEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEcCCCCC
Confidence 99999999999999999999999999999999999987667899999999999999999999999999999999999999
Q ss_pred CchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCCccHHHHHHHHHccCccEEEEeccCHHHHHHH
Q 015722 197 GRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLA 276 (402)
Q Consensus 197 g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~Pv~vK~~~~~~da~~a 276 (402)
|+|++|+||+|.+|.++...++..............+...+.....++.++|++|+|+|+.|++||++|++.+.+||++|
T Consensus 162 G~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~di~wlr~~~~~PiivKgV~~~~dA~~a 241 (367)
T PLN02493 162 GRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDARIA 241 (367)
T ss_pred CcchhhhcccCCCCcccchhhhhhccccCCCcccchhHHHHHhhcCCCCCCHHHHHHHHhccCCCEEeecCCCHHHHHHH
Confidence 99999999999988766655432211000011112223345555568899999999999999999999999999999999
Q ss_pred HHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHHHhhhcCChH
Q 015722 277 IQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEA 356 (402)
Q Consensus 277 ~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~~~~~~G~~ 356 (402)
.++|+|+|+||||||||+|+.+++++.|+++++++.+++|||+|||||+|.|++|||++||++|+||||++|++...|++
T Consensus 242 ~~~Gvd~I~VsnhGGrqld~~~~t~~~L~ei~~av~~~~~vi~dGGIr~G~Dv~KALALGA~aV~iGr~~l~~l~~~G~~ 321 (367)
T PLN02493 242 IQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEA 321 (367)
T ss_pred HHcCCCEEEECCCCCCCCCCchhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHH
Confidence 99999999999999999999999999999999988778999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCChhhhcccceeccCCCCCcccCC
Q 015722 357 GVRKVLQMLRDEFELTMALSGCRSLKEITRNHIVTHWDTPGAVARL 402 (402)
Q Consensus 357 gv~~~i~~l~~el~~~m~~~G~~~i~el~~~~l~~~~~~~~~~~~~ 402 (402)
||.++++.+++||+..|.++|+++++|+++..+......++.-+||
T Consensus 322 gv~~~l~~l~~el~~~m~l~G~~~i~~l~~~~~~~~~~~~~~~~~~ 367 (367)
T PLN02493 322 GVRKVLQMLRDEFELTMALSGCRSLKEISRNHITTEWDTPRPSARL 367 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHhChhhhhHHHhccCcccCC
Confidence 9999999999999999999999999999999887776666666665
No 3
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=100.00 E-value=1.9e-80 Score=618.64 Aligned_cols=356 Identities=35% Similarity=0.628 Sum_probs=323.1
Q ss_pred CCCChHHHHHHHhhhCCccccccccCcccchhhHHHhHHhhhcccccccccCCCCCCccceeecCcccCCceeecccccc
Q 015722 37 EITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQ 116 (402)
Q Consensus 37 ~~~~i~d~~~~A~~~l~~~~~~y~~gGa~~e~t~~~N~~~~~~~~l~pr~l~~~~~~d~st~i~G~~l~~Pi~iAPm~~~ 116 (402)
.++|++|||+.||++||+.+|+|++||++||.|+++|+++|++|.|+||+|++++++||+|++||+++++||++||+|++
T Consensus 2 ~~~~i~D~~~~Ar~~Lp~~~~~Y~~gga~de~t~~~N~~af~~~~l~PR~L~dv~~~d~~t~llG~~~~~Pi~iAP~g~~ 81 (381)
T PRK11197 2 IISAASDYRAAAQRRLPPFLFHYIDGGAYAEYTLRRNVEDLADIALRQRVLKDMSDLSLETTLFGEKLSMPVALAPVGLT 81 (381)
T ss_pred ccCCHHHHHHHHHHhCCHHHHHHHhcCcchHHHHHHHHHHHHhcceecccccCCCCCCCceEECCcccccchhhChHHHh
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChhhHHHHHHHHHcCCeEEecCCccCCHHHHhhcCCCceEEEEeecCChhHHHHHHHHHHHcCCcEEEEecCCCCC
Q 015722 117 KMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRL 196 (402)
Q Consensus 117 ~~~~~~ge~ala~aa~~~G~~~~vs~~~~~s~eei~~~~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~ 196 (402)
+++||+||+++||+|+++|+++++|+.+++|+|||++..+++.|||||+++|++.++++++||+++||++|+||||+|+.
T Consensus 82 ~l~hp~gE~~~AraA~~~g~~~~lSt~ss~slEeia~~~~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTVD~pv~ 161 (381)
T PRK11197 82 GMYARRGEVQAARAADAKGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPVP 161 (381)
T ss_pred hccCCchHHHHHHHHHHcCCCEEeeCCCcCCHHHHHhccCCCeEEEEEecCCHHHHHHHHHHHHHcCCCEEEEecCCCCC
Confidence 99999999999999999999999999999999999988777899999999999999999999999999999999999999
Q ss_pred CchhHHHhhhcCCCCccccccccccc-----------------cccCC-----CCCchhhHHHhhhhcCCCccHHHHHHH
Q 015722 197 GRREADIKNRFVLPPHLTLKNYEGLY-----------------IGKMD-----KTDDSGLASYVANQIDRSLNWKDVKWL 254 (402)
Q Consensus 197 g~r~~d~r~~~~~p~~~~~~~~~~~~-----------------~~~~~-----~~~~~~~~~~~~~~~d~~~~~~~i~~l 254 (402)
|+|++|+|++|.+|.. +.+++.+.. ..+.. .........+.....++.++|++|+|+
T Consensus 162 G~Rerd~rn~~~~p~~-~~~~~~~~~~~p~w~~~~~~~~~~~~~~n~~~~~~~~~g~~~~~~~~~~~~~~~ltW~di~~l 240 (381)
T PRK11197 162 GARYRDAHSGMSGPNA-AMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWI 240 (381)
T ss_pred CCChhhhhcCCCCCCc-hhhhHHhhhcCchhhhhhccccCCCcccccccccccccchhHHHHHHHhccCCCCCHHHHHHH
Confidence 9999999999988742 333211100 00000 000111223455556899999999999
Q ss_pred HHccCccEEEEeccCHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHH
Q 015722 255 QTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALA 334 (402)
Q Consensus 255 r~~~~~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~ 334 (402)
++.|++||++|++++.++|+.+.++|+|+|+||||||||++..+++++.|++|++++.+++|||+||||++|.|++|+|+
T Consensus 241 r~~~~~pvivKgV~s~~dA~~a~~~Gvd~I~Vs~hGGr~~d~~~~t~~~L~~i~~a~~~~~~vi~dGGIr~g~Di~KALa 320 (381)
T PRK11197 241 RDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDITILADSGIRNGLDVVRMIA 320 (381)
T ss_pred HHhCCCCEEEEecCCHHHHHHHHhCCCCEEEECCCCCCCCCCcccHHHHHHHHHHHhcCCCeEEeeCCcCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988866899999999999999999999
Q ss_pred cCcCEEEEchHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHhCCCChhhhcccceeccC
Q 015722 335 LGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIVTHW 393 (402)
Q Consensus 335 lGAd~V~iGr~~l~~~~~~G~~gv~~~i~~l~~el~~~m~~~G~~~i~el~~~~l~~~~ 393 (402)
+||++|++||||++++...|++||.++++.+++||+..|.++|+++++||++..+...+
T Consensus 321 LGA~~V~iGr~~l~~la~~G~~gv~~~l~~l~~El~~~m~l~G~~~i~el~~~~l~~~~ 379 (381)
T PRK11197 321 LGADTVLLGRAFVYALAAAGQAGVANLLDLIEKEMRVAMTLTGAKSISEITRDSLVQGN 379 (381)
T ss_pred cCcCceeEhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCHhhhcccc
Confidence 99999999999999999999999999999999999999999999999999998775443
No 4
>PLN02535 glycolate oxidase
Probab=100.00 E-value=5.5e-80 Score=612.69 Aligned_cols=360 Identities=64% Similarity=0.997 Sum_probs=327.0
Q ss_pred CCCCChHHHHHHHhhhCCccccccccCcccchhhHHHhHHhhhcccccccccCCCCCCccceeecCcccCCceeeccccc
Q 015722 36 SEITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAF 115 (402)
Q Consensus 36 ~~~~~i~d~~~~A~~~l~~~~~~y~~gGa~~e~t~~~N~~~~~~~~l~pr~l~~~~~~d~st~i~G~~l~~Pi~iAPm~~ 115 (402)
.+++|++|||+.||++||+.+|+|++||+++|.|+++|+++|++|+|+||+|++++++||+|++||+++++||++||+|+
T Consensus 3 ~~~~~i~d~~~~A~~~lp~~~~~Y~~gga~~e~t~~~N~~af~~~~l~Pr~L~dv~~~d~~t~~lG~~~~~P~~iaP~g~ 82 (364)
T PLN02535 3 DEIVNVNEFQELAKQALPKMYYDFYAGGAEDQHTLKENVQAFRRITFRPRVLVDVSKIDMSTTILGYTISAPIMIAPTAM 82 (364)
T ss_pred cccCCHHHHHHHHHHhCCHHHHHHHhcCCcccHHHHHHHHHHHhCCeecccccCCCCCCCceEECCccccccceechHHH
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCChhhHHHHHHHHHcCCeEEecCCccCCHHHHhhcCCCceEEEEeecCChhHHHHHHHHHHHcCCcEEEEecCCCC
Q 015722 116 QKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPR 195 (402)
Q Consensus 116 ~~~~~~~ge~ala~aa~~~G~~~~vs~~~~~s~eei~~~~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~ 195 (402)
+++.||+||+++||+|+++|+++++|+.+++++|||++..+++.|||||+++|++.++++++||+++||++|+||+|+|+
T Consensus 83 ~~l~hp~gE~a~AraA~~~g~~~~lSt~s~~slEeva~~~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTvD~p~ 162 (364)
T PLN02535 83 HKLAHPEGEIATARAAAACNTIMVLSFMASCTVEEVASSCNAVRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADVPR 162 (364)
T ss_pred hcccCcchHHHHHHHHHHcCCCeEecCcccCCHHHHHhcCCCCeEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeecCCC
Confidence 99999999999999999999999999999999999998767789999999999999999999999999999999999999
Q ss_pred CCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCCccHHHHHHHHHccCccEEEEeccCHHHHHH
Q 015722 196 LGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASL 275 (402)
Q Consensus 196 ~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~Pv~vK~~~~~~da~~ 275 (402)
.|+|++|+||+|.+|. .+++..............+...+.....++.++|++|+|+++.+++||++|++.++++|+.
T Consensus 163 ~g~R~~d~r~~~~~p~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~~i~~lr~~~~~PvivKgV~~~~dA~~ 239 (364)
T PLN02535 163 LGRREADIKNKMISPQ---LKNFEGLLSTEVVSDKGSGLEAFASETFDASLSWKDIEWLRSITNLPILIKGVLTREDAIK 239 (364)
T ss_pred CCCchhhhhcCCCCcc---hhhHhhhhccCCCccccccHHHHHHhccCCCCCHHHHHHHHhccCCCEEEecCCCHHHHHH
Confidence 9999999999998773 2222111000001111122344555556889999999999999999999999999999999
Q ss_pred HHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHHHhhhcCCh
Q 015722 276 AIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGE 355 (402)
Q Consensus 276 a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~~~~~~G~ 355 (402)
+.++|+|+|+|+||||+++|+++++++.|+++++++..++|||++|||+++.|++|+|++||++|+||||+++++...|+
T Consensus 240 a~~~GvD~I~vsn~GGr~~d~~~~t~~~L~ev~~av~~~ipVi~dGGIr~g~Dv~KALalGA~aV~vGr~~l~~l~~~g~ 319 (364)
T PLN02535 240 AVEVGVAGIIVSNHGARQLDYSPATISVLEEVVQAVGGRVPVLLDGGVRRGTDVFKALALGAQAVLVGRPVIYGLAAKGE 319 (364)
T ss_pred HHhcCCCEEEEeCCCcCCCCCChHHHHHHHHHHHHHhcCCCEEeeCCCCCHHHHHHHHHcCCCEEEECHHHHhhhhhccH
Confidence 99999999999999999999999999999999998866899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCChhhhcccceeccCCCCCc
Q 015722 356 AGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIVTHWDTPGA 398 (402)
Q Consensus 356 ~gv~~~i~~l~~el~~~m~~~G~~~i~el~~~~l~~~~~~~~~ 398 (402)
+|+.++++.+.+||+..|.++|+.+++|+++..+....+.-+|
T Consensus 320 ~gv~~~l~~l~~el~~~m~l~G~~~i~el~~~~l~~~~~~~~~ 362 (364)
T PLN02535 320 DGVRKVIEMLKDELEITMALSGCPSVKDITRSHVRTERERLQS 362 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHHHhhhhhccchHhhhhh
Confidence 9999999999999999999999999999999888665554433
No 5
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=100.00 E-value=3.8e-79 Score=606.61 Aligned_cols=348 Identities=37% Similarity=0.599 Sum_probs=317.6
Q ss_pred CCCCChHHHHHHHhhhCCccccccccCcccchhhHHHhHHhhhcccccccccCCCCCCccceeecCcccCCceeeccccc
Q 015722 36 SEITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAF 115 (402)
Q Consensus 36 ~~~~~i~d~~~~A~~~l~~~~~~y~~gGa~~e~t~~~N~~~~~~~~l~pr~l~~~~~~d~st~i~G~~l~~Pi~iAPm~~ 115 (402)
.+++|++|||+.||++||+.+|+|++||++||.|+++|+++|++|+|+||+|++++++||+|++||+++++||++||+++
T Consensus 11 ~~~~~i~D~~~~A~~~lp~~~~~y~~~ga~de~t~~~N~~af~~~~l~PR~L~dv~~~d~~t~llG~~~~~Pv~iaP~g~ 90 (367)
T TIGR02708 11 VDFINTYDLEEMAQQVIPKGAFGYIASGAGDTFTLRENIRAFNHKLIVPHLLQDVENPSTEIEFLGHKLKSPFIMAPVAA 90 (367)
T ss_pred cCCCCHHHHHHHHHHhCCHHHHHHHhcCCchHHHHHHHHHHHHhcCeecccccCCCCCCCceeeCCcccccccccCcHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCChhhHHHHHHHHHcCCeEEecCCccCCHHHHhhcC-CCceEEEEeecCChhHHHHHHHHHHHcCCcEEEEecCCC
Q 015722 116 QKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTG-PGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTP 194 (402)
Q Consensus 116 ~~~~~~~ge~ala~aa~~~G~~~~vs~~~~~s~eei~~~~-~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p 194 (402)
+++.||+||+++||+|+++|+++++|+.+++++|||++.. +++.|||||+.+|++.+.++++||+++||++|+||||+|
T Consensus 91 ~~l~~p~gE~~~ArAA~~~g~~~~lSt~ss~slEev~~~~~~~~~wfQlY~~~dr~~~~~li~RA~~aG~~alvlTvD~p 170 (367)
T TIGR02708 91 HKLANEQGEVATARGVSEFGSIYTTSSYSTADLPEISEALNGTPHWFQFYMSKDDGINRDIMDRVKADGAKAIVLTADAT 170 (367)
T ss_pred hhccCCcHHHHHHHHHHHcCCCeeecccccCCHHHHHhhcCCCceEEEEeccCCHHHHHHHHHHHHHcCCCEEEEecCCC
Confidence 9999999999999999999999999999999999999874 578999999999999999999999999999999999999
Q ss_pred CCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCCccHHHHHHHHHccCccEEEEeccCHHHHH
Q 015722 195 RLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDAS 274 (402)
Q Consensus 195 ~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~Pv~vK~~~~~~da~ 274 (402)
+.|+|++|+|++|.+|.+....+ ..+. ...... ........++.++|++|+|+++.+++||++|++.++++|+
T Consensus 171 ~~g~R~~d~r~~~~~p~~~~~~~-~~~~-----~~~~~~-~~~~~~~~~~~~~w~~i~~l~~~~~~PvivKGv~~~eda~ 243 (367)
T TIGR02708 171 VGGNREVDVRNGFVFPVGMPIVQ-EYLP-----TGAGKS-MDNVYKSAKQKLSPRDIEEIAGYSGLPVYVKGPQCPEDAD 243 (367)
T ss_pred CCCcchhhhhcCCCCCCccchhh-hhcc-----cCCccc-hhhhccccCCCCCHHHHHHHHHhcCCCEEEeCCCCHHHHH
Confidence 99999999999998875332111 0000 000000 0011112357899999999999999999999999999999
Q ss_pred HHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHHHhhhcCC
Q 015722 275 LAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDG 354 (402)
Q Consensus 275 ~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~~~~~~G 354 (402)
++.++|+|+|+||||||||+|.++++++.|+++++++++++|||+||||+++.|++|+|++||++|+||||++++++..|
T Consensus 244 ~a~~~Gvd~I~VS~HGGrq~~~~~a~~~~L~ei~~av~~~i~vi~dGGIr~g~Dv~KaLalGAd~V~igR~~l~~la~~G 323 (367)
T TIGR02708 244 RALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAEAVDKRVPIVFDSGVRRGQHVFKALASGADLVALGRPVIYGLALGG 323 (367)
T ss_pred HHHHcCcCEEEECCcCccCCCCCCcHHHHHHHHHHHhCCCCcEEeeCCcCCHHHHHHHHHcCCCEEEEcHHHHHHHHhcC
Confidence 99999999999999999999999999999999999887789999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCChhhhccccee
Q 015722 355 EAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 390 (402)
Q Consensus 355 ~~gv~~~i~~l~~el~~~m~~~G~~~i~el~~~~l~ 390 (402)
++||.++++.+++||+..|.++|+++++||++..+.
T Consensus 324 ~~gv~~~l~~l~~El~~~M~l~G~~~i~eL~~~~l~ 359 (367)
T TIGR02708 324 SQGARQVFEYLNKELKRVMQLTGTQTIEDVKGFDLR 359 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHhCccccc
Confidence 999999999999999999999999999999988774
No 6
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=100.00 E-value=3.6e-79 Score=605.59 Aligned_cols=342 Identities=44% Similarity=0.705 Sum_probs=313.2
Q ss_pred HHHHHHHhhhCCccccccccCcccchhhHHHhHHhhhcccccccccCCCCCCccceeecCcccCCceeecccccccccCC
Q 015722 42 MEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHP 121 (402)
Q Consensus 42 ~d~~~~A~~~l~~~~~~y~~gGa~~e~t~~~N~~~~~~~~l~pr~l~~~~~~d~st~i~G~~l~~Pi~iAPm~~~~~~~~ 121 (402)
+|||+.||++||+.+|+|++||++||.|+++|+++|++|.|+||+|++++++||+|++||+++++||++||+|+++++||
T Consensus 1 ~D~~~~Ar~~lp~~~~~Y~~~ga~de~t~~~N~~af~~~~l~PRvLr~v~~~d~~ttllG~~~~~P~~iaP~g~~~l~hp 80 (361)
T cd04736 1 EDYRSLAKKRLPRMVFDYLEGGAEDEKGLRHNRDAFDRWRFIPRRLVDVSKRDISASLFGKVWSAPLVIAPTGLNGAFWP 80 (361)
T ss_pred ChHHHHHHHhCCHHHHHHHccCcchHHHHHHHHHHHHHcCccccccCCCCCCCCceeECCccccccccccHHHHHhccCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHcCCeEEecCCccCCHHHHhhcCCCceEEEEeecCChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhH
Q 015722 122 EGECATARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREA 201 (402)
Q Consensus 122 ~ge~ala~aa~~~G~~~~vs~~~~~s~eei~~~~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~ 201 (402)
+||+++||+|+++|++|++|+.+++|+|||+++.+++.|||||+. |++.++++++||+++||++|+||||+|+.|+|++
T Consensus 81 ~gE~a~AraA~~~g~~~~lSt~ss~siEeva~a~~~~~wfQLY~~-~r~~~~~ll~RA~~aG~~alvlTvD~pv~g~R~~ 159 (361)
T cd04736 81 NGDLALARAAAKAGIPFVLSTASNMSIEDVARQADGDLWFQLYVV-HRELAELLVKRALAAGYTTLVLTTDVAVNGYRER 159 (361)
T ss_pred cHHHHHHHHHHHcCCcEEeeCCCCCCHHHHHhhcCCCeEEEEEec-CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCchh
Confidence 999999999999999999999999999999988777899999996 6999999999999999999999999999999999
Q ss_pred HHhhhcCCCCccccccccccccc----------------cCCC---CCchhhHHHhhhhcCCCccHHHHHHHHHccCccE
Q 015722 202 DIKNRFVLPPHLTLKNYEGLYIG----------------KMDK---TDDSGLASYVANQIDRSLNWKDVKWLQTITSLPI 262 (402)
Q Consensus 202 d~r~~~~~p~~~~~~~~~~~~~~----------------~~~~---~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~Pv 262 (402)
|+|++|.+|.+++.+++.+...+ .... ....+...+...+.++.++|++|+|+++.++.|+
T Consensus 160 d~r~~~~~p~~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~w~~i~~ir~~~~~pv 239 (361)
T cd04736 160 DLRNGFAIPFRYTPRVLLDGILHPRWLLRFLRNGMPQLANFASDDAIDVEVQAALMSRQMDASFNWQDLRWLRDLWPHKL 239 (361)
T ss_pred hhhcCCCCCcccchhhhhhhccCchhhhhhcccccccccccccccccchhhHHHHHHhccCCcCCHHHHHHHHHhCCCCE
Confidence 99999998877665553211000 0000 0011133344445789999999999999999999
Q ss_pred EEEeccCHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEE
Q 015722 263 LVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFV 342 (402)
Q Consensus 263 ~vK~~~~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~i 342 (402)
++|++.+.+|++.+.++|+|+|+||||||||++..+++++.|+++++.+ ++|||+||||++|.|++|||++||++|++
T Consensus 240 iiKgV~~~eda~~a~~~G~d~I~VSnhGGrqld~~~~~~~~L~ei~~~~--~~~vi~dGGIr~g~Dv~KALaLGA~aV~i 317 (361)
T cd04736 240 LVKGIVTAEDAKRCIELGADGVILSNHGGRQLDDAIAPIEALAEIVAAT--YKPVLIDSGIRRGSDIVKALALGANAVLL 317 (361)
T ss_pred EEecCCCHHHHHHHHHCCcCEEEECCCCcCCCcCCccHHHHHHHHHHHh--CCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 9999999999999999999999999999999999999999999999887 59999999999999999999999999999
Q ss_pred chHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHhCCCChhhhcc
Q 015722 343 GRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITR 386 (402)
Q Consensus 343 Gr~~l~~~~~~G~~gv~~~i~~l~~el~~~m~~~G~~~i~el~~ 386 (402)
|||++|+++..|++||.++++.|++||+..|.++|+++++|+++
T Consensus 318 Gr~~l~~la~~G~~gv~~~l~~l~~el~~~m~l~G~~~i~~l~~ 361 (361)
T cd04736 318 GRATLYGLAARGEAGVSEVLRLLKEEIDRTLALIGCPDIASLTP 361 (361)
T ss_pred CHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHcCc
Confidence 99999999999999999999999999999999999999999863
No 7
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=100.00 E-value=1.3e-78 Score=606.35 Aligned_cols=350 Identities=40% Similarity=0.651 Sum_probs=315.4
Q ss_pred CCChHHHHHHHhhhCCccccccccCcccchhhHHHhHHhhhcccccccccCCCCCCccceeecCcccCCceeeccccccc
Q 015722 38 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQK 117 (402)
Q Consensus 38 ~~~i~d~~~~A~~~l~~~~~~y~~gGa~~e~t~~~N~~~~~~~~l~pr~l~~~~~~d~st~i~G~~l~~Pi~iAPm~~~~ 117 (402)
++|++|||+.||++||+.+|+|++||++||.|+++|+++|++|+|+||+|+|++++||+|+|||+++++||++||+|+++
T Consensus 18 ~~~i~D~~~~Ar~~lp~~~~~y~~gGa~de~t~~~N~~af~~~~l~PRvL~dv~~~dt~t~llG~~~~~P~~iAP~g~~~ 97 (383)
T cd03332 18 PVDPERLEALAREALSPGAFAYVAGGAGSESTARANRDAFSRWRIVPRMLRGVTERDLSVELFGRTLAAPLLLAPIGVQE 97 (383)
T ss_pred cCCHHHHHHHHHHhCCHHHHHHhccCcchHHHHHHHHHHHHhcCccccccccCCCCCCceeeCCccccccceechHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChhhHHHHHHHHHcCCeEEecCCccCCHHHHhhcCC-CceEEEEeecCChhHHHHHHHHHHHcCCcEEEEecCCCCC
Q 015722 118 MAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTGP-GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRL 196 (402)
Q Consensus 118 ~~~~~ge~ala~aa~~~G~~~~vs~~~~~s~eei~~~~~-~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~ 196 (402)
+.||+||+++||+|+++|+++++|+.+++++|||++..+ ++.|||||+.+|++.+.++++||+++||++|+||||+|+.
T Consensus 98 l~~p~gE~a~ArAA~~~gi~~~lSt~ss~slEeIa~~~~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTVD~pv~ 177 (383)
T cd03332 98 LFHPDAELATARAAAELGVPYILSTASSSSIEDVAAAAGDAPRWFQLYWPKDDDLTESLLRRAEKAGYRVLVVTLDTWSL 177 (383)
T ss_pred hcCCcHHHHHHHHHHHcCCCeeecCCCCCCHHHHHhhcCCCCcEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence 999999999999999999999999999999999998744 7899999999999999999999999999999999999999
Q ss_pred CchhHHHhhhcCCCCc--ccccccc-c------cccccCCC-C----CchhhHHHhhhhcCCCccHHHHHHHHHccCccE
Q 015722 197 GRREADIKNRFVLPPH--LTLKNYE-G------LYIGKMDK-T----DDSGLASYVANQIDRSLNWKDVKWLQTITSLPI 262 (402)
Q Consensus 197 g~r~~d~r~~~~~p~~--~~~~~~~-~------~~~~~~~~-~----~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~Pv 262 (402)
|+|++|+|++| .|.. .+..++. . +....... . ...+.........++.++|++|+|+++.|++||
T Consensus 178 g~Rerd~r~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~~i~~lr~~~~~pv 256 (383)
T cd03332 178 GWRPRDLDLGY-LPFLRGIGIANYFSDPVFRKKLAEPVGEDPEAPPPMEAAVARFVSVFSGPSLTWEDLAFLREWTDLPI 256 (383)
T ss_pred CCchhhhhcCC-CCCccccchhhhhccchhhhccccCCCCCcccccccchhHHHHHHhcCCCCCCHHHHHHHHHhcCCCE
Confidence 99999999998 3431 1211110 0 00000000 0 011122233333578899999999999999999
Q ss_pred EEEeccCHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEE
Q 015722 263 LVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFV 342 (402)
Q Consensus 263 ~vK~~~~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~i 342 (402)
++|++.+.+||+.+.++|+|+|+|||||||++|+++++++.|+++++++.+++|||++|||++|.|++|||++||++|++
T Consensus 257 ivKgV~~~~dA~~a~~~G~d~I~vsnhGGr~~d~~~~t~~~L~ei~~~~~~~~~vi~dGGIr~G~Dv~KALaLGA~~v~i 336 (383)
T cd03332 257 VLKGILHPDDARRAVEAGVDGVVVSNHGGRQVDGSIAALDALPEIVEAVGDRLTVLFDSGVRTGADIMKALALGAKAVLI 336 (383)
T ss_pred EEecCCCHHHHHHHHHCCCCEEEEcCCCCcCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCcCcHHHHHHHHHcCCCEEEE
Confidence 99999999999999999999999999999999999999999999999987789999999999999999999999999999
Q ss_pred chHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHhCCCChhhhcccc
Q 015722 343 GRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNH 388 (402)
Q Consensus 343 Gr~~l~~~~~~G~~gv~~~i~~l~~el~~~m~~~G~~~i~el~~~~ 388 (402)
||||+|+++..|++||.++++.+++||+..|.++|+++++||+++.
T Consensus 337 Gr~~l~~l~~~G~~gv~~~l~~l~~El~~~m~l~G~~~i~~l~~~~ 382 (383)
T cd03332 337 GRPYAYGLALGGEDGVEHVLRNLLAELDLTMGLAGIRSIAELTRDA 382 (383)
T ss_pred cHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCccc
Confidence 9999999999999999999999999999999999999999998864
No 8
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=100.00 E-value=1.8e-77 Score=593.92 Aligned_cols=347 Identities=41% Similarity=0.686 Sum_probs=316.8
Q ss_pred CCCChHHHHHHHhhhCCccccccccCcccchhhHHHhHHhhhcccccccccCCCCCCccceeecCcccCCceeecccccc
Q 015722 37 EITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQ 116 (402)
Q Consensus 37 ~~~~i~d~~~~A~~~l~~~~~~y~~gGa~~e~t~~~N~~~~~~~~l~pr~l~~~~~~d~st~i~G~~l~~Pi~iAPm~~~ 116 (402)
+++|++|||+.||++||+.+|+|++||++||.|+++|+++|++|.|+||+|++++++||+|++||+++++||++||||++
T Consensus 4 ~~~~i~d~~~~A~~~lp~~~~~y~~~ga~~e~t~~~N~~a~~~~~l~prvL~dv~~~d~~t~~lG~~~~~P~~iaP~g~~ 83 (351)
T cd04737 4 DIINLYDLEAEAKKVIPKGAFGYIAGGSEDEWTLRENTRAFNHKQIVPRVLQGVESPDTSTELLGIKLKTPIIMAPIAAH 83 (351)
T ss_pred ccCcHHHHHHHHHHhCCHHHHHHHhcCcchHHHHHHHHHHHHhcCeechhccCCCCCCCceEeCCccccchhhhHHHHHH
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChhhHHHHHHHHHcCCeEEecCCccCCHHHHhhcC-CCceEEEEeecCChhHHHHHHHHHHHcCCcEEEEecCCCC
Q 015722 117 KMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTG-PGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPR 195 (402)
Q Consensus 117 ~~~~~~ge~ala~aa~~~G~~~~vs~~~~~s~eei~~~~-~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~ 195 (402)
++.||++|+++||+|+++|+++++|+.+++++|||+++. +++.|||||+++|++.++++++||+++||++|++|+|+|+
T Consensus 84 ~l~~p~ge~a~AraA~~~gi~~~lSt~s~~s~Eei~~~~~~~~~wfQlY~~~d~~~~~~ll~rA~~aG~~alvlTvD~p~ 163 (351)
T cd04737 84 GLAHATGEVATARGMAEVGSLFSISTYSNTSLEEIAKASNGGPKWFQLYMSKDDGFNRSLLDRAKAAGAKAIILTADATV 163 (351)
T ss_pred HhcCCchHHHHHHHHHHcCCCEEecCCCCCCHHHHHHhcCCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCC
Confidence 999999999999999999999999999999999999886 4789999999999999999999999999999999999999
Q ss_pred CCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCCccHHHHHHHHHccCccEEEEeccCHHHHHH
Q 015722 196 LGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASL 275 (402)
Q Consensus 196 ~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~Pv~vK~~~~~~da~~ 275 (402)
.|+|++|+|++|.+|.+....+...... ....+.. ......++.++|++++|+++.+++||++|++.++++|+.
T Consensus 164 ~g~R~~d~r~~~~~p~~~~~~~~~~~~~-----~~~~~~~-~~~~~~~~~~~~~~l~~lr~~~~~PvivKgv~~~~dA~~ 237 (351)
T cd04737 164 GGNREADIRNKFQFPFGMPNLNHFSEGT-----GKGKGIS-EIYAAAKQKLSPADIEFIAKISGLPVIVKGIQSPEDADV 237 (351)
T ss_pred CCcchHHHHhcCCCCcccchhhhhcccc-----ccCcchh-hhhhhccCCCCHHHHHHHHHHhCCcEEEecCCCHHHHHH
Confidence 9999999999998885443322110000 0000000 111234677899999999999999999999999999999
Q ss_pred HHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHHHhhhcCCh
Q 015722 276 AIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGE 355 (402)
Q Consensus 276 a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~~~~~~G~ 355 (402)
+.++|+|+|+||||||+|+|+++++++.|+++++++.+++|||++|||+++.|++|+|++||++|+||||++|+++..|+
T Consensus 238 a~~~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~~~~i~vi~dGGIr~g~Di~kaLalGA~~V~iGr~~l~~la~~G~ 317 (351)
T cd04737 238 AINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVPIIFDSGVRRGEHVFKALASGADAVAVGRPVLYGLALGGA 317 (351)
T ss_pred HHHcCCCEEEEeCCCCccCCCCchHHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHHHhhchH
Confidence 99999999999999999999999999999999998877899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCChhhhcccce
Q 015722 356 AGVRKVLQMLRDEFELTMALSGCRSLKEITRNHI 389 (402)
Q Consensus 356 ~gv~~~i~~l~~el~~~m~~~G~~~i~el~~~~l 389 (402)
+||.++++.+++||+.+|.++|+.+++|+++..+
T Consensus 318 ~gv~~~l~~l~~El~~~m~l~G~~~i~el~~~~~ 351 (351)
T cd04737 318 QGVASVLEHLNKELKIVMQLAGTRTIEDVKRTFL 351 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHhCCCCC
Confidence 9999999999999999999999999999987643
No 9
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=100.00 E-value=1.1e-75 Score=584.50 Aligned_cols=343 Identities=46% Similarity=0.744 Sum_probs=305.6
Q ss_pred HhhhCCccccccccCcccchhhHHHhHHhhhcccccccccCCCCCCccceeecCcccCCceeecccccccccCChhhHHH
Q 015722 48 AKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECAT 127 (402)
Q Consensus 48 A~~~l~~~~~~y~~gGa~~e~t~~~N~~~~~~~~l~pr~l~~~~~~d~st~i~G~~l~~Pi~iAPm~~~~~~~~~ge~al 127 (402)
||++||+..|+|++||+++|.|+++|+++|++|+|+||+|++++++||+|+|||+++++||++|||+++++.||++|.++
T Consensus 1 Ar~~lp~~~~~yi~gga~~e~t~~~N~~af~~i~l~prvL~dv~~~D~st~~lG~~~s~P~~iaP~~~~~l~~~~ge~~l 80 (356)
T PF01070_consen 1 ARRRLPPRVFDYIDGGAGDEVTFRRNREAFDRIRLRPRVLRDVSDPDTSTTFLGQKLSMPFFIAPMGGGGLAHPDGERAL 80 (356)
T ss_dssp HHHHS-HHHHHHHHHHSTTTHHHHHHHHGGGGEEE---SSSBGSS-BSSEEETTEEESSSEEEEEESTGGGTSTTHHHHH
T ss_pred CccccCHHHHHHHHHcCCCcHHHHHHHHHHHHhcccccccCCcccCCCCeeeCCccCCCCeEEcchhhhhhhccchHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCeEEecCCccCCHHHHhhcCCCceEEEEeecCChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhc
Q 015722 128 ARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRF 207 (402)
Q Consensus 128 a~aa~~~G~~~~vs~~~~~s~eei~~~~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~ 207 (402)
|++|+++|+++++|+.++.++|++++..+++.|||||.+.|++.+.++++||+++||++|+||+|+|+.++|++|+|++|
T Consensus 81 AraA~~~Gi~~~lss~s~~~~e~ia~~~~~~~~~Qly~~~d~~~~~~~i~rAe~aG~~Al~vtvD~~~~~~R~~d~r~g~ 160 (356)
T PF01070_consen 81 ARAAAKAGIPMMLSSQSSASLEEIAAASGGPLWFQLYPPRDRELTRDLIRRAEAAGAKALVVTVDAPQEGNRERDLRNGF 160 (356)
T ss_dssp HHHHHHHTSEEEEETTCSSCHHHHHHHCTSEEEEEEEGBSSHHHHHHHHHHHHHTTCSEEEEETSHSSHHHBHHHHHHTC
T ss_pred HHHHhccCcceeccCCccCCHHHHHhhccCCeEEEEEEecCHHHHHHHHHHhhcCCCCEEEEECcCcccCCccccccccc
Confidence 99999999999999999999999998877899999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccccccccccC-------------CCCCchhhHHHhhhhcCCCccHHHHHHHHHccCccEEEEeccCHHHHH
Q 015722 208 VLPPHLTLKNYEGLYIGKM-------------DKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDAS 274 (402)
Q Consensus 208 ~~p~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~Pv~vK~~~~~~da~ 274 (402)
.+|.+++.+++.+....+. ..........+.....++.++|++|+|+++.|++||++|++++++||+
T Consensus 161 ~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~~~~~~~~~pvivKgv~~~~da~ 240 (356)
T PF01070_consen 161 SVPPKLSPRNLLDGASHPRSGMPRLENNEAPPPGDNGAAAARFVGSQFDPSLTWDDIEWIRKQWKLPVIVKGVLSPEDAK 240 (356)
T ss_dssp CCSTTHCTTCGTTTTTTT-TTTGG-----CSSSSTSTCHHHHHHHCHB-TT-SHHHHHHHHHHCSSEEEEEEE-SHHHHH
T ss_pred CCCcccccccccccccCcccccccccccccccCCCcchhHHHHHHHhcCCCCCHHHHHHHhcccCCceEEEecccHHHHH
Confidence 9998877666533211100 011223345566666789999999999999999999999999999999
Q ss_pred HHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHHHhhhcCC
Q 015722 275 LAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDG 354 (402)
Q Consensus 275 ~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~~~~~~G 354 (402)
++.++|+|+|+||||||||+|+++++++.|+++++++++++|||+|||||+|.|++|+|+|||++|++|||++|++...|
T Consensus 241 ~~~~~G~~~i~vs~hGGr~~d~~~~~~~~L~~i~~~~~~~~~i~~dgGir~g~Dv~kalaLGA~~v~igr~~l~~l~~~g 320 (356)
T PF01070_consen 241 RAVDAGVDGIDVSNHGGRQLDWGPPTIDALPEIRAAVGDDIPIIADGGIRRGLDVAKALALGADAVGIGRPFLYALAAGG 320 (356)
T ss_dssp HHHHTT-SEEEEESGTGTSSTTS-BHHHHHHHHHHHHTTSSEEEEESS--SHHHHHHHHHTT-SEEEESHHHHHHHHHHH
T ss_pred HHHhcCCCEEEecCCCcccCccccccccccHHHHhhhcCCeeEEEeCCCCCHHHHHHHHHcCCCeEEEccHHHHHHHHhh
Confidence 99999999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCChhhhccccee
Q 015722 355 EAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 390 (402)
Q Consensus 355 ~~gv~~~i~~l~~el~~~m~~~G~~~i~el~~~~l~ 390 (402)
++||.++++.|++||+..|.++|+.+++||+++.+.
T Consensus 321 ~~gv~~~~~~l~~el~~~m~l~G~~~~~~l~~~~~~ 356 (356)
T PF01070_consen 321 EEGVERVLEILKEELKRAMFLLGARSIAELRRSLLR 356 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-SBGGGHTGGGEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCHHhcC
Confidence 999999999999999999999999999999998763
No 10
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=100.00 E-value=1.2e-73 Score=566.46 Aligned_cols=338 Identities=47% Similarity=0.746 Sum_probs=309.7
Q ss_pred HHHHHHHhhhCCccccccccCcccchhhHHHhHHhhhcccccccccCCCCCCccceeecCcccCCceeecccccccccCC
Q 015722 42 MEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHP 121 (402)
Q Consensus 42 ~d~~~~A~~~l~~~~~~y~~gGa~~e~t~~~N~~~~~~~~l~pr~l~~~~~~d~st~i~G~~l~~Pi~iAPm~~~~~~~~ 121 (402)
+|||+.||++||+.+|+|++||++||.|+++|+.+|++|+|+||+|++++++||+|+|||+++++||++|||+++++.||
T Consensus 1 ~d~~~~A~~~lp~~~~~y~~~ga~~e~t~~~N~~af~~~~l~pr~L~dv~~~d~~~~~lG~~~~~Pi~iaP~~~~~~~~~ 80 (344)
T cd02922 1 HDFEAAAKKYLSKKAWAYYSSGADDEITLRENLEAFQRIRFRPRVLRDVEKVDTSTTILGHKVSLPFFISPAALAKLAHP 80 (344)
T ss_pred ChHHHHHHHhCCHHHHHHhccCcchHHHHHHHHHHHHhCceeccccCCCCCCCCceEECCcccCCceeeChHHHhhhCCc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHcCCeEEecCCccCCHHHHhhc-CC-CceEEEEeecCChhHHHHHHHHHHHcCCcEEEEecCCCCCCch
Q 015722 122 EGECATARAASAAGTIMTLSSWATSSVEEVSST-GP-GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRR 199 (402)
Q Consensus 122 ~ge~ala~aa~~~G~~~~vs~~~~~s~eei~~~-~~-~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r 199 (402)
++|+++|++|+++|++|++|+++++++|+|++. .| .+.|||||.++|++.+.++++|++++||++|+||+|+|+.|+|
T Consensus 81 ~ge~~~AraA~~~gi~~~lss~s~~s~e~v~~~~~~~~~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r 160 (344)
T cd02922 81 DGELNLARAAGKHGILQMISTNASCSLEEIVDARPPDQPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKR 160 (344)
T ss_pred hHHHHHHHHHHHcCCCEEecCcccCCHHHHHHhcCCCCcEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcc
Confidence 999999999999999999999999999998876 34 6899999999999999999999999999999999999999999
Q ss_pred hHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCCccHHHHHHHHHccCccEEEEeccCHHHHHHHHHh
Q 015722 200 EADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQY 279 (402)
Q Consensus 200 ~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~Pv~vK~~~~~~da~~a~~a 279 (402)
++|+|++|..|.+++..+.... ....+...+.....++..+|++++++++.+++||++|++.++++|+.+.++
T Consensus 161 ~~d~r~~~~~p~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~PvivKgv~~~~dA~~a~~~ 233 (344)
T cd02922 161 ERDERLKAEEAVSDGPAGKKTK-------AKGGGAGRAMSGFIDPTLTWDDIKWLRKHTKLPIVLKGVQTVEDAVLAAEY 233 (344)
T ss_pred hhhhhhcCCcCccccccccccc-------cccchHHHHHhhccCCCCCHHHHHHHHHhcCCcEEEEcCCCHHHHHHHHHc
Confidence 9999999988765544321100 011112223333457888999999999999999999999999999999999
Q ss_pred CCcEEEEecCcccCCCCCcchHHHHHHHHHHh---cCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHHHhhhcCChH
Q 015722 280 GAAGIIVSNHGARQLDYVPATVMALEEVVQAA---KGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEA 356 (402)
Q Consensus 280 Gad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~---~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~~~~~~G~~ 356 (402)
|+|+|+|+||||+++|..+++++.|+++++.+ ++++|||++|||++|.|++|+|++||++|+||||+++++.+.|++
T Consensus 234 G~d~I~vsnhgG~~~d~~~~~~~~L~~i~~~~~~~~~~~~vi~~GGIr~G~Dv~kalaLGA~aV~iG~~~l~~l~~~G~~ 313 (344)
T cd02922 234 GVDGIVLSNHGGRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYVDGGVRRGTDVLKALCLGAKAVGLGRPFLYALSAYGEE 313 (344)
T ss_pred CCCEEEEECCCcccCCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHhhccHH
Confidence 99999999999999999999999999998854 457999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCChhhhcc
Q 015722 357 GVRKVLQMLRDEFELTMALSGCRSLKEITR 386 (402)
Q Consensus 357 gv~~~i~~l~~el~~~m~~~G~~~i~el~~ 386 (402)
||.++++.+++||+.+|.++|+++++||++
T Consensus 314 gv~~~l~~l~~EL~~~m~l~G~~~i~~l~~ 343 (344)
T cd02922 314 GVEKAIQILKDEIETTMRLLGVTSLDQLGP 343 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHhCc
Confidence 999999999999999999999999999975
No 11
>PLN02979 glycolate oxidase
Probab=100.00 E-value=3.8e-70 Score=537.38 Aligned_cols=324 Identities=85% Similarity=1.248 Sum_probs=293.9
Q ss_pred cccccccccCCCCCCccceeecCcccCCceeecccccccccCChhhHHHHHHHHHcCCeEEecCCccCCHHHHhhcCCCc
Q 015722 79 RILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTGPGI 158 (402)
Q Consensus 79 ~~~l~pr~l~~~~~~d~st~i~G~~l~~Pi~iAPm~~~~~~~~~ge~ala~aa~~~G~~~~vs~~~~~s~eei~~~~~~~ 158 (402)
-|.|+||+|++++++||+|++||+++++||++||+|++++.||+||+++||+|+++|+++++|+.++.|+|||+++.+++
T Consensus 43 ~~~lrPRvLrdv~~~dtst~llG~~~~~P~~iAP~g~~~l~hpdgE~a~ARAA~~agi~~~lSt~ss~slEeIa~a~~~~ 122 (366)
T PLN02979 43 FCDFRPRILIDVSKIDMTTTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGI 122 (366)
T ss_pred eeEEECccccCCCCCCCceEECCcccCccceecHHHHHhhCCCChHHHHHHHHHHcCCCeeeccCcCCCHHHHHhccCCC
Confidence 38899999999999999999999999999999999999999999999999999999999999999999999999887778
Q ss_pred eEEEEeecCChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHh
Q 015722 159 RFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYV 238 (402)
Q Consensus 159 ~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (402)
.|||||+++|++.+.++++||+++||++|++|||+|+.|+|++|+||+|.+|.+.+..++..............+...+.
T Consensus 123 ~wfQLY~~~Dr~~~~~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (366)
T PLN02979 123 RFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYV 202 (366)
T ss_pred eEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCCchhhhccCCCCCcccchhhhhhccccCCCcccchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999887666555422110000111122334455
Q ss_pred hhhcCCCccHHHHHHHHHccCccEEEEeccCHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEE
Q 015722 239 ANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVF 318 (402)
Q Consensus 239 ~~~~d~~~~~~~i~~lr~~~~~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~vi 318 (402)
....++.++|++|+|+|+.|++||++|++.+.+||+++.++|+|+|+||||||+|+|+++++++.|+++++++.+++|||
T Consensus 203 ~~~~~~~ltW~dl~wlr~~~~~PvivKgV~~~~dA~~a~~~Gvd~I~VsnhGGrqld~~p~t~~~L~ei~~~~~~~~~Vi 282 (366)
T PLN02979 203 AGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVF 282 (366)
T ss_pred hhcCCCCCCHHHHHHHHhccCCCEEeecCCCHHHHHHHHhcCCCEEEECCCCcCCCCCchhHHHHHHHHHHHhCCCCeEE
Confidence 45568899999999999999999999999999999999999999999999999999999999999999999887789999
Q ss_pred EecCCCCHHHHHHHHHcCcCEEEEchHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHhCCCChhhhcccceeccCCCCCc
Q 015722 319 LDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIVTHWDTPGA 398 (402)
Q Consensus 319 a~GGI~~g~dv~kal~lGAd~V~iGr~~l~~~~~~G~~gv~~~i~~l~~el~~~m~~~G~~~i~el~~~~l~~~~~~~~~ 398 (402)
+|||||+|.|++|||++||++|++|||++++++..|++||.++++.+++||+..|.++|+.+++|+.+..+......+|.
T Consensus 283 ~dGGIr~G~Di~KALALGAdaV~iGrp~L~~la~~G~~Gv~~~l~~l~~El~~~m~l~G~~~i~el~~~~~~~~~~~~~~ 362 (366)
T PLN02979 283 LDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCRSLKEISRNHITTEWDTPRP 362 (366)
T ss_pred EeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhChhhhhHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988777767777
Q ss_pred ccCC
Q 015722 399 VARL 402 (402)
Q Consensus 399 ~~~~ 402 (402)
-+||
T Consensus 363 ~~~~ 366 (366)
T PLN02979 363 SARL 366 (366)
T ss_pred ccCC
Confidence 7775
No 12
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=100.00 E-value=6.4e-64 Score=497.11 Aligned_cols=348 Identities=41% Similarity=0.611 Sum_probs=319.9
Q ss_pred hHHHHHHHhhhCCccccccccCcccchhhHHHhHHhhhcccccccccCCCCCCccceeecCcccCCceeecccccccccC
Q 015722 41 VMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAH 120 (402)
Q Consensus 41 i~d~~~~A~~~l~~~~~~y~~gGa~~e~t~~~N~~~~~~~~l~pr~l~~~~~~d~st~i~G~~l~~Pi~iAPm~~~~~~~ 120 (402)
+.|+++.|++++| +.|+|+.+|+++|.|++.|+++|+++.|+|++|++++++|++|++||+++++||++|||+++++.|
T Consensus 1 ~~~~~~~a~~~~~-~~~hy~~~~~~~e~t~~~n~~~f~~i~l~~~~L~~v~~idlst~~~G~~l~~Pi~iapmt~g~~~~ 79 (360)
T COG1304 1 VADLRRAAQRRLP-KAFHYIDGGAEDEVTLRRNREAFEDIALRPRVLPEVDDIDLSTTFLGQKLSAPIIIAPMTGGGLAH 79 (360)
T ss_pred CcchHHHHhhhcc-hHhHHHHhhccccccHhhhhhhhhhheeecccCCCcccCccceEecCccccCCEEEeccccccccC
Confidence 3689999999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHcCCeEEecCCccCCHHHHhhcCCCceEEEEeecCChhHHHHHHHHHHHcCCcEEEEecCCCCCCchh
Q 015722 121 PEGECATARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRRE 200 (402)
Q Consensus 121 ~~ge~ala~aa~~~G~~~~vs~~~~~s~eei~~~~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~ 200 (402)
+++|...+++|..+|.++++|+.+++++|++.+..+ ||+|+..|++...++++++.++|++.+++|+|.|+.++|+
T Consensus 80 ~~ge~~~a~~A~~a~~~~i~s~~gs~~ie~~~~~~~----~q~y~~~~R~~~~~~~~~a~n~G~~~lv~t~d~~~~~~r~ 155 (360)
T COG1304 80 PEGEVINAKLAAAAGEPFILSTVGSQRIEEVAAAPP----FQLYFSKDREFAPNLVDRAANAGAKQLVLTVDSPVGGERE 155 (360)
T ss_pred hhhHHHHHHHHHHcCCCeeeeccccCcHHHhhcCcc----hhhhhHHHHHhhHHHHHHHHhcCCcceeeccCccchHHHH
Confidence 999999999999999999999999999999886654 9999989999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCccccccccccccccCCCCCch----hhHHHhhhhcCCCccHHHHHHHHHccCccEEEEeccCHHHHHHH
Q 015722 201 ADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDS----GLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLA 276 (402)
Q Consensus 201 ~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~d~~~~~~~i~~lr~~~~~Pv~vK~~~~~~da~~a 276 (402)
+|.++.+..|+.....|+.+....+-...... ...++.....+|..+|+++.++++.|.+|+++||+.+++|+..+
T Consensus 156 ~d~~~~i~a~~~~~h~n~~qe~~~p~g~~~~~~~~~~i~~~~~~~~~P~i~ked~~~i~~~~~~~lv~kGV~~~~D~~~a 235 (360)
T COG1304 156 RDAVNGISAPALAIHLNVLQEATQPEGDRDGKGGLDSIAEYVSALSVPVISKEDGAGISKEWAGPLVLKGILAPEDAAGA 235 (360)
T ss_pred HHHHhccCCCcccccccHHHHhcCCcccccccchhhHHHHHHHhcCCCcccHHHHhHHHHhcCCcHHHhCCCCHHHHHhh
Confidence 99999998887666666544221110111111 23456656678999999999999999999999999999999999
Q ss_pred HHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHHHhhhcCChH
Q 015722 277 IQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEA 356 (402)
Q Consensus 277 ~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~~~~~~G~~ 356 (402)
.+.|+|+|++|||||+|+|+|+++++.|++|+++++++++|++|||||+|.|++|||++||++|++|||++|++...|++
T Consensus 236 ~~tg~~~I~vsnhggrqlD~g~st~~~L~ei~~av~~~~~vi~dGGiR~G~Dv~KAlALGA~~v~igrp~L~~l~~~g~~ 315 (360)
T COG1304 236 GGTGADGIEVSNHGGRQLDWGISTADSLPEIVEAVGDRIEVIADGGIRSGLDVAKALALGADAVGIGRPFLYGLAAGGEA 315 (360)
T ss_pred ccCCceEEEEEcCCCccccCCCChHHHHHHHHHHhCCCeEEEecCCCCCHHHHHHHHHhCCchhhhhHHHHHHHHhccHH
Confidence 99999999999999999999999999999999999888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCChhhhcccceeccC
Q 015722 357 GVRKVLQMLRDEFELTMALSGCRSLKEITRNHIVTHW 393 (402)
Q Consensus 357 gv~~~i~~l~~el~~~m~~~G~~~i~el~~~~l~~~~ 393 (402)
||.++++.+++||+..|.++|+++|+||++..++...
T Consensus 316 GV~~~le~~~~El~~~M~L~G~~~i~el~~~~l~~~~ 352 (360)
T COG1304 316 GVERVLEIIRKELKIAMALTGAKNIEELKRVPLVLSG 352 (360)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcHHHhccCceeecc
Confidence 9999999999999999999999999999999877643
No 13
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=100.00 E-value=5.6e-58 Score=449.07 Aligned_cols=299 Identities=57% Similarity=0.914 Sum_probs=283.4
Q ss_pred HHHHHHHhhhCCccccccccCcccchhhHHHhHHhhhcccccccccCCCCCCccceeecCcccCCceeecccccccccCC
Q 015722 42 MEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHP 121 (402)
Q Consensus 42 ~d~~~~A~~~l~~~~~~y~~gGa~~e~t~~~N~~~~~~~~l~pr~l~~~~~~d~st~i~G~~l~~Pi~iAPm~~~~~~~~ 121 (402)
+|||..|+++||+..|.|+.+|++++.|+++|+..|++|+|+||+|++++++||+|+|||++++.||++|||++.+..|+
T Consensus 1 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~l~~~~~id~~~~~lg~~~~~Pi~iapm~g~~~~~~ 80 (299)
T cd02809 1 ADLRALARRRLPKAVFDYIDGGAGDEVTLRRNRAAFDRIRLRPRVLRDVSKRDTSTTLLGQKLAMPFGIAPTGLQGLAHP 80 (299)
T ss_pred ChHHHHHHHhCCHHHhhhhccccchHHHHHHHHHHHHhceeecccCCCCCCCCCceEECCeecCCCeeeCcccccccCCc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999998888899
Q ss_pred hhhHHHHHHHHHcCCeEEecCCccCCHHHHhhcCCCceEEEEeecCChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhH
Q 015722 122 EGECATARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREA 201 (402)
Q Consensus 122 ~ge~ala~aa~~~G~~~~vs~~~~~s~eei~~~~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~ 201 (402)
+++.++|++|+++|+++++|++++.+.+++.+..+++.|+|||...+++.+.++++++++.|+++|++|+|||..+.|
T Consensus 81 ~~~~~la~aa~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~-- 158 (299)
T cd02809 81 DGELATARAAAAAGIPFTLSTVSTTSLEEVAAAAPGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLGRR-- 158 (299)
T ss_pred hHHHHHHHHHHHcCCCEEecCCCcCCHHHHHHhcCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCC--
Confidence 999999999999999999999888999999888778999999987789999999999999999999999999853211
Q ss_pred HHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCCccHHHHHHHHHccCccEEEEeccCHHHHHHHHHhCC
Q 015722 202 DIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGA 281 (402)
Q Consensus 202 d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~Pv~vK~~~~~~da~~a~~aGa 281 (402)
..|+.++++++.+++||++|++.++++|+.+.++|+
T Consensus 159 --------------------------------------------~~~~~i~~l~~~~~~pvivK~v~s~~~a~~a~~~G~ 194 (299)
T cd02809 159 --------------------------------------------LTWDDLAWLRSQWKGPLILKGILTPEDALRAVDAGA 194 (299)
T ss_pred --------------------------------------------CCHHHHHHHHHhcCCCEEEeecCCHHHHHHHHHCCC
Confidence 367889999999999999999999999999999999
Q ss_pred cEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHHHhhhcCChHHHHHH
Q 015722 282 AGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKV 361 (402)
Q Consensus 282 d~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~~~~~~G~~gv~~~ 361 (402)
|+|+++||||++.++++++++.|+++++.+.+++|||++|||+++.|++|+|++|||+|++||||++++...|++++.++
T Consensus 195 d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lGAd~V~ig~~~l~~~~~~g~~~v~~~ 274 (299)
T cd02809 195 DGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLIGRPFLYGLAAGGEAGVAHV 274 (299)
T ss_pred CEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHH
Confidence 99999999999999999999999999998866799999999999999999999999999999999999888899999999
Q ss_pred HHHHHHHHHHHHHHhCCCChhhhcc
Q 015722 362 LQMLRDEFELTMALSGCRSLKEITR 386 (402)
Q Consensus 362 i~~l~~el~~~m~~~G~~~i~el~~ 386 (402)
++.+++||+.+|.++|+++++||++
T Consensus 275 i~~l~~el~~~m~~~G~~~i~~l~~ 299 (299)
T cd02809 275 LEILRDELERAMALLGCASLADLDP 299 (299)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHhCc
Confidence 9999999999999999999999964
No 14
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=100.00 E-value=5.3e-38 Score=311.00 Aligned_cols=269 Identities=27% Similarity=0.365 Sum_probs=215.1
Q ss_pred hHHhhhcccccccccC--CCCCCccceeecCcccCCceeecccccccccCChhhHHHHHHHHHcCCeEEecCCcc--CC-
Q 015722 73 NRNAFSRILFRPRILR--DVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWAT--SS- 147 (402)
Q Consensus 73 N~~~~~~~~l~pr~l~--~~~~~d~st~i~G~~l~~Pi~iAPm~~~~~~~~~ge~ala~aa~~~G~~~~vs~~~~--~s- 147 (402)
+...||++.|+|+.|+ +++++||+|+|+|.+++.||++|||+++.....+.+..+|++|+++|+++++++.+. ..
T Consensus 18 ~~~~~d~i~l~~~~l~~~~~~~id~s~~~~G~~l~~Pi~ia~mtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~~ 97 (326)
T cd02811 18 GSTGFDDVRLVHNALPELDLDDIDLSTEFLGKRLSAPLLISAMTGGSEKAKEINRNLAEAAEELGIAMGVGSQRAALEDP 97 (326)
T ss_pred CCCChhhEEEecccCCCCCcccCCCeeEECCceecCCEEEeCCCCCChHHHHHHHHHHHHHHHcCCCeEecCchhhccCh
Confidence 4567999999999998 889999999999999999999999988754444456899999999999999987742 12
Q ss_pred -----HHHHhhcCC-CceEEEEeecC----ChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCcccccc
Q 015722 148 -----VEEVSSTGP-GIRFFQLYVTK----HRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKN 217 (402)
Q Consensus 148 -----~eei~~~~~-~~~~~QLy~~~----d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~ 217 (402)
.+.+.+..+ .+++..+.... +.+.. .+.++..+++++.|+++++.. ...|
T Consensus 98 e~~~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~---~~~i~~~~adalel~l~~~q~----------~~~~------- 157 (326)
T cd02811 98 ELAESFTVVREAPPNGPLIANLGAVQLNGYGVEEA---RRAVEMIEADALAIHLNPLQE----------AVQP------- 157 (326)
T ss_pred hhhhHHHHHHHhCCCceEEeecCccccCCCCHHHH---HHHHHhcCCCcEEEeCcchHh----------hcCC-------
Confidence 223444444 55556665433 34443 334445678999998875421 0001
Q ss_pred ccccccccCCCCCchhhHHHhhhhcCCCc-cH-HHHHHHHHccCccEEEEec---cCHHHHHHHHHhCCcEEEEecCccc
Q 015722 218 YEGLYIGKMDKTDDSGLASYVANQIDRSL-NW-KDVKWLQTITSLPILVKGV---LTAEDASLAIQYGAAGIIVSNHGAR 292 (402)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~-~~i~~lr~~~~~Pv~vK~~---~~~~da~~a~~aGad~I~vsn~gg~ 292 (402)
..+.++ .| +.|+++++.+++||++|++ .+.++++.+.++|+|+|+|+++||+
T Consensus 158 -----------------------~~~~df~~~~~~i~~l~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vsG~GGt 214 (326)
T cd02811 158 -----------------------EGDRDFRGWLERIEELVKALSVPVIVKEVGFGISRETAKRLADAGVKAIDVAGAGGT 214 (326)
T ss_pred -----------------------CCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCCCCC
Confidence 012222 23 6799999999999999987 7899999999999999999999884
Q ss_pred ---------C-----------CCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHHHhhhc
Q 015722 293 ---------Q-----------LDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAV 352 (402)
Q Consensus 293 ---------~-----------~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~~~~~ 352 (402)
+ .+++.++.+.|.++++.+. ++|||++|||+++.|++|+|++|||+|++||||+.++..
T Consensus 215 ~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~-~ipIiasGGIr~~~dv~kal~lGAd~V~i~~~~L~~~~~ 293 (326)
T cd02811 215 SWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALP-DLPLIASGGIRNGLDIAKALALGADLVGMAGPFLKAALE 293 (326)
T ss_pred cccccccccccccccccccccccccccHHHHHHHHHHHcC-CCcEEEECCCCCHHHHHHHHHhCCCEEEEcHHHHHHHhc
Confidence 1 1346777888999887764 799999999999999999999999999999999998776
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhCCCChhhhcc
Q 015722 353 DGEAGVRKVLQMLRDEFELTMALSGCRSLKEITR 386 (402)
Q Consensus 353 ~G~~gv~~~i~~l~~el~~~m~~~G~~~i~el~~ 386 (402)
|++++.++++.+.+||+.+|.++|++|++|++.
T Consensus 294 -g~~~~~~~i~~~~~el~~~m~~~G~~si~el~~ 326 (326)
T cd02811 294 -GEEAVIETIEQIIEELRTAMFLTGAKNLAELKQ 326 (326)
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhcC
Confidence 999999999999999999999999999999963
No 15
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=100.00 E-value=1.3e-37 Score=310.91 Aligned_cols=277 Identities=24% Similarity=0.345 Sum_probs=223.1
Q ss_pred HhhhcccccccccC--CCCCCccceeecCcccCCceeecccccccccCChhhHHHHHHHHHcCCeEEecCCcc--CC---
Q 015722 75 NAFSRILFRPRILR--DVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWAT--SS--- 147 (402)
Q Consensus 75 ~~~~~~~l~pr~l~--~~~~~d~st~i~G~~l~~Pi~iAPm~~~~~~~~~ge~ala~aa~~~G~~~~vs~~~~--~s--- 147 (402)
..||+++|+|+.|. +++++||+|+|+|.+++.||+++||++++....+.+.+||++|+++|+++++++++. .+
T Consensus 28 ~~~d~v~l~~~~lp~~~~~~vd~s~~~~g~~l~~Pi~i~~MtGgs~~~~~in~~La~~a~~~G~~~~~Gs~~~~~~~~~~ 107 (352)
T PRK05437 28 TGFDDVRLIHNALPELDLDDIDLSTEFLGKKLSAPFLINAMTGGSEKAKEINRKLAEAAEELGIAMGVGSQRAALKDPEL 107 (352)
T ss_pred CChheEEEecccCCCCChhhccceeeECCceecCCEEecccCCCChhHHHHHHHHHHHHHHcCCCeEecccHhhccChhh
Confidence 46999999999997 788999999999999999999999998763334556899999999999999988752 11
Q ss_pred ---HHHHhhcCC-CceEEEEeecCChhH-HHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccc
Q 015722 148 ---VEEVSSTGP-GIRFFQLYVTKHRNV-DAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLY 222 (402)
Q Consensus 148 ---~eei~~~~~-~~~~~QLy~~~d~~~-~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~ 222 (402)
.+.+.+..| .|++..|........ .++..+.++..+++++.|+++++.. ...|
T Consensus 108 ~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~~qe----------~~~p------------ 165 (352)
T PRK05437 108 ADSFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNPLQE----------LVQP------------ 165 (352)
T ss_pred HHHHHHHHHHCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCccchh----------hcCC------------
Confidence 222344444 566776665433222 2334445556788999998876531 0001
Q ss_pred cccCCCCCchhhHHHhhhhcCCCc--cHHHHHHHHHccCccEEEEec---cCHHHHHHHHHhCCcEEEEecCccc-----
Q 015722 223 IGKMDKTDDSGLASYVANQIDRSL--NWKDVKWLQTITSLPILVKGV---LTAEDASLAIQYGAAGIIVSNHGAR----- 292 (402)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~d~~~--~~~~i~~lr~~~~~Pv~vK~~---~~~~da~~a~~aGad~I~vsn~gg~----- 292 (402)
..+.++ ..+.++++++.+++||++|++ .+.++++.+.++|+|+|+|+|+||+
T Consensus 166 ------------------~g~~~f~~~le~i~~i~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vsg~GGt~~~~i 227 (352)
T PRK05437 166 ------------------EGDRDFRGWLDNIAEIVSALPVPVIVKEVGFGISKETAKRLADAGVKAIDVAGAGGTSWAAI 227 (352)
T ss_pred ------------------CCcccHHHHHHHHHHHHHhhCCCEEEEeCCCCCcHHHHHHHHHcCCCEEEECCCCCCCccch
Confidence 112222 237799999999999999988 7899999999999999999999883
Q ss_pred ----C---------CCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHHHhhhcCChHHHH
Q 015722 293 ----Q---------LDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVR 359 (402)
Q Consensus 293 ----~---------~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~~~~~~G~~gv~ 359 (402)
+ .+++.++.+.|.++++.+ .++|||++|||+++.|+.|+|++|||+|++|||+++++...|.+++.
T Consensus 228 e~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~-~~ipvia~GGI~~~~dv~k~l~~GAd~v~ig~~~l~~~~~~g~~~v~ 306 (352)
T PRK05437 228 ENYRARDDRLASYFADWGIPTAQSLLEARSLL-PDLPIIASGGIRNGLDIAKALALGADAVGMAGPFLKAALEGGEEAVI 306 (352)
T ss_pred hhhhhhccccccccccccCCHHHHHHHHHHhc-CCCeEEEECCCCCHHHHHHHHHcCCCEEEEhHHHHHHHHhccHHHHH
Confidence 2 145788899999998874 37999999999999999999999999999999999998888999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCChhhhcccceecc
Q 015722 360 KVLQMLRDEFELTMALSGCRSLKEITRNHIVTH 392 (402)
Q Consensus 360 ~~i~~l~~el~~~m~~~G~~~i~el~~~~l~~~ 392 (402)
++++.+.+||+.+|..+|+++++||++..+...
T Consensus 307 ~~i~~~~~eL~~~m~~~G~~~i~eL~~~~~~~~ 339 (352)
T PRK05437 307 ELIEQWIEELKIAMFLTGAKNIAELRKVPLVLS 339 (352)
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHhCCCCEEec
Confidence 999999999999999999999999999877654
No 16
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=100.00 E-value=2.4e-36 Score=299.97 Aligned_cols=276 Identities=26% Similarity=0.364 Sum_probs=214.6
Q ss_pred HhhhcccccccccC--CCCCCccceeecCcccCCceeecccccccccCChhhHHHHHHHHHcCCeEEecCCccC--C---
Q 015722 75 NAFSRILFRPRILR--DVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATS--S--- 147 (402)
Q Consensus 75 ~~~~~~~l~pr~l~--~~~~~d~st~i~G~~l~~Pi~iAPm~~~~~~~~~ge~ala~aa~~~G~~~~vs~~~~~--s--- 147 (402)
..||+++|+|..|. +++++||||+|+|++++.||+++||++++......+..++++|+++|+++++++.+.. .
T Consensus 21 ~~~~~~~~~~~~lp~~~~~~~d~s~~~~g~~l~~Pi~iaaMtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~~~~ 100 (333)
T TIGR02151 21 TGFDDITLIHNALPEINLDDIDLTTEFLGKRLKAPFYINAMTGGSEEAGKINRNLARAARELGIPMGVGSQRAALKDPET 100 (333)
T ss_pred CCcceEEEecCCCCCCCcccCCCceEECCccccCCEEEeCCCCCchhHHHHHHHHHHHHHHcCCCeEEcCchhhccChhh
Confidence 35999999999996 6789999999999999999999999877522233467999999999999999876521 1
Q ss_pred ---HHHHhhcCC-CceEEEEeecCChhH-HHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccc
Q 015722 148 ---VEEVSSTGP-GIRFFQLYVTKHRNV-DAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLY 222 (402)
Q Consensus 148 ---~eei~~~~~-~~~~~QLy~~~d~~~-~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~ 222 (402)
...+.+..+ .|....+......+. ..+..+.++..+++++.++++++.. .
T Consensus 101 ~~~~~~vr~~~~~~p~i~nl~~~~~~~~~~~~~~~~i~~i~adal~i~ln~~q~----------------~--------- 155 (333)
T TIGR02151 101 ADTFEVVREEAPNGPLIANIGAPQLVEGGPEEAQEAIDMIEADALAIHLNVLQE----------------L--------- 155 (333)
T ss_pred HhHHHHHHHhCCCCcEEeecCchhhccccHHHHHHHHHHhcCCCEEEcCccccc----------------c---------
Confidence 122334333 455555543222111 3334444555678999998876531 0
Q ss_pred cccCCCCCchhhHHHhhhhcCCCc-cH-HHHHHHHHccCccEEEEec---cCHHHHHHHHHhCCcEEEEecCcccC----
Q 015722 223 IGKMDKTDDSGLASYVANQIDRSL-NW-KDVKWLQTITSLPILVKGV---LTAEDASLAIQYGAAGIIVSNHGARQ---- 293 (402)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~d~~~-~~-~~i~~lr~~~~~Pv~vK~~---~~~~da~~a~~aGad~I~vsn~gg~~---- 293 (402)
.++..+.++ .| +.++++++.+++||++|.+ .+.++++.+.++|+|+|+|+++||+.
T Consensus 156 ---------------~~p~g~~~f~~~le~i~~i~~~~~vPVivK~~g~g~~~~~a~~L~~aGvd~I~Vsg~gGt~~~~i 220 (333)
T TIGR02151 156 ---------------VQPEGDRNFKGWLEKIAEICSQLSVPVIVKEVGFGISKEVAKLLADAGVSAIDVAGAGGTSWAQV 220 (333)
T ss_pred ---------------cCCCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCCCCCcccch
Confidence 001112223 23 7799999999999999987 78999999999999999999998753
Q ss_pred --------------CCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHHHhhhcCChHHHH
Q 015722 294 --------------LDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVR 359 (402)
Q Consensus 294 --------------~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~~~~~~G~~gv~ 359 (402)
.+++.++.+.|.++++ +..++|||++|||+++.|+.|+|++|||+|++|||++.++...|++++.
T Consensus 221 e~~r~~~~~~~~~~~~~g~~t~~~l~~~~~-~~~~ipVIasGGI~~~~di~kaLalGAd~V~igr~~L~~~~~~g~~~v~ 299 (333)
T TIGR02151 221 ENYRAKGSNLASFFNDWGIPTAASLLEVRS-DAPDAPIIASGGLRTGLDVAKAIALGADAVGMARPFLKAALDEGEEAVI 299 (333)
T ss_pred hhhcccccccchhhhcccHhHHHHHHHHHh-cCCCCeEEEECCCCCHHHHHHHHHhCCCeehhhHHHHHHHHhcCHHHHH
Confidence 2346677788888876 2237999999999999999999999999999999999987767999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCChhhhcccceec
Q 015722 360 KVLQMLRDEFELTMALSGCRSLKEITRNHIVT 391 (402)
Q Consensus 360 ~~i~~l~~el~~~m~~~G~~~i~el~~~~l~~ 391 (402)
++++.+.+||+.+|.++|++|++||++..+..
T Consensus 300 ~~i~~~~~eL~~~m~~~G~~~i~el~~~~~~~ 331 (333)
T TIGR02151 300 EEIELIIEELKVAMFLTGAKTIAELKKVPLVI 331 (333)
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHccCCeEe
Confidence 99999999999999999999999999887654
No 17
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=99.97 E-value=4e-29 Score=244.57 Aligned_cols=257 Identities=19% Similarity=0.213 Sum_probs=192.6
Q ss_pred hhhcccccccccC--CCCCCccceeecCcccCCceeecccccccccCChhhHHHHHHHHHcCCeEEecCCccCCHHHHh-
Q 015722 76 AFSRILFRPRILR--DVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVS- 152 (402)
Q Consensus 76 ~~~~~~l~pr~l~--~~~~~d~st~i~G~~l~~Pi~iAPm~~~~~~~~~ge~ala~aa~~~G~~~~vs~~~~~s~eei~- 152 (402)
.||++.|+|..+. +++++|++|+|+|++++.||++++|.. ..|..||++|++.|...++..+ ++|+..
T Consensus 3 ~FddV~lvp~~lp~~s~~dVdlst~~~~~~l~~P~~inAM~t------~in~~LA~~a~~~G~~~i~hK~---~~E~~~s 73 (321)
T TIGR01306 3 DYEDIQLIPNKCIVNSRSECDTSVTLGKHKFKLPVVPANMQT------IIDEKLAEQLAENGYFYIMHRF---DEESRIP 73 (321)
T ss_pred CcccEEEecCCCCCCCHHHceeeEEECCcEecCcEEeeccch------hhhHHHHHHHHHcCCEEEEecC---CHHHHHH
Confidence 6999999999986 457999999999999999999999942 4688999999999999998652 555533
Q ss_pred ---hcCCCceEEEEeecCChhHHHHHHHHHHHcC--CcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCC
Q 015722 153 ---STGPGIRFFQLYVTKHRNVDAQLVKRAERAG--FKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMD 227 (402)
Q Consensus 153 ---~~~~~~~~~QLy~~~d~~~~~~~l~ra~~~G--~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~ 227 (402)
+..+..+.+-+-.....+.. +.+....++| .+.|++ |+..
T Consensus 74 fvrk~k~~~L~v~~SvG~t~e~~-~r~~~lv~a~~~~d~i~~--D~ah-------------------------------- 118 (321)
T TIGR01306 74 FIKDMQERGLFASISVGVKACEY-EFVTQLAEEALTPEYITI--DIAH-------------------------------- 118 (321)
T ss_pred HHHhccccccEEEEEcCCCHHHH-HHHHHHHhcCCCCCEEEE--eCcc--------------------------------
Confidence 22222223333333333333 2333344456 466655 4321
Q ss_pred CCCchhhHHHhhhhcCCCccHHHHHHHHHccCccEEEEe-ccCHHHHHHHHHhCCcEEEEecCcccCC--------CCCc
Q 015722 228 KTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKG-VLTAEDASLAIQYGAAGIIVSNHGARQL--------DYVP 298 (402)
Q Consensus 228 ~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~Pv~vK~-~~~~~da~~a~~aGad~I~vsn~gg~~~--------d~~~ 298 (402)
.+....++.++++|+.++.|.++|+ +.+.++|+.+.++|||+|.|++++|+.. ..+.
T Consensus 119 --------------g~s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~~~ 184 (321)
T TIGR01306 119 --------------GHSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGG 184 (321)
T ss_pred --------------CchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccceeeeccCCCc
Confidence 1223456889999999998866666 8999999999999999999998877531 1223
Q ss_pred chHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHH--------------------Hhhhc------
Q 015722 299 ATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVP--------------------FSLAV------ 352 (402)
Q Consensus 299 ~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l--------------------~~~~~------ 352 (402)
+.+..+.++++++ ++|||+||||+++.|++|||++|||+||+|++|- +++..
T Consensus 185 ~~l~ai~ev~~a~--~~pVIadGGIr~~~Di~KALa~GAd~Vmig~~~ag~~Espg~~~~~~g~~~k~y~g~~~~~~~~~ 262 (321)
T TIGR01306 185 WQLAALRWCAKAA--RKPIIADGGIRTHGDIAKSIRFGASMVMIGSLFAGHEESPGETVEKDGKLYKEYFGSASEFQKGE 262 (321)
T ss_pred hHHHHHHHHHHhc--CCeEEEECCcCcHHHHHHHHHcCCCEEeechhhcCcccCCCceEeeCCeEHhhhcCchhhhcccc
Confidence 3567899999877 7999999999999999999999999999999872 22110
Q ss_pred ----CCh-------HHHHHHHHHHHHHHHHHHHHhCCCChhhhcccceecc
Q 015722 353 ----DGE-------AGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIVTH 392 (402)
Q Consensus 353 ----~G~-------~gv~~~i~~l~~el~~~m~~~G~~~i~el~~~~l~~~ 392 (402)
.|. ..+.+++..+...|+..|.++|+.+|+||++..++..
T Consensus 263 ~~~~eg~~~~v~~~g~~~~~~~~~~~glr~~~~~~G~~~l~~~~~~~~~~~ 313 (321)
T TIGR01306 263 HKNVEGKKMFVEHKGSLSDTLIEMQQDLQSSISYAGGKDLDSLRTVDYVIV 313 (321)
T ss_pred cccccceEEEeccCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHhhCCEEEE
Confidence 010 1288999999999999999999999999997755543
No 18
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=99.96 E-value=3.1e-28 Score=239.22 Aligned_cols=256 Identities=18% Similarity=0.214 Sum_probs=194.6
Q ss_pred hhhcccccccccC--CCCCCccceeecCcccCCceeecccccccccCChhhHHHHHHHHHcCCeEEecCCccCCHHHHh-
Q 015722 76 AFSRILFRPRILR--DVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVS- 152 (402)
Q Consensus 76 ~~~~~~l~pr~l~--~~~~~d~st~i~G~~l~~Pi~iAPm~~~~~~~~~ge~ala~aa~~~G~~~~vs~~~~~s~eei~- 152 (402)
.||++.|+|..|. +++++|++|+|+|+++++||++++|.. ..|..||+.|++.|...++.- +++|+..
T Consensus 6 ~Fddv~lv~~~lp~~s~~dvdlst~~~~~~l~~P~~inAM~t------~iN~~LA~~a~~~G~~~~~~k---~~~e~~~~ 76 (326)
T PRK05458 6 DYEDIQLIPNKCIVNSRSECDTSVTLGPRTFKLPVVPANMQT------IIDEKIAEWLAENGYFYIMHR---FDPEARIP 76 (326)
T ss_pred CccceEEecCCCCCCCHHHcccceEECCcEecCcEEEecccc------hhHHHHHHHHHHcCCEEEEec---CCHHHHHH
Confidence 5999999999986 567999999999999999999999942 468899999999999988854 3556543
Q ss_pred ---hcCCCceEEEEeecCChhHHHHHHHHHHHcCC--cEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCC
Q 015722 153 ---STGPGIRFFQLYVTKHRNVDAQLVKRAERAGF--KAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMD 227 (402)
Q Consensus 153 ---~~~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~--~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~ 227 (402)
+..+..+++-+-+..+.+.. +.++...++|+ ++|+| |+...
T Consensus 77 ~~r~~~~~~l~v~~~vg~~~~~~-~~~~~Lv~ag~~~d~i~i--D~a~g------------------------------- 122 (326)
T PRK05458 77 FIKDMHEQGLIASISVGVKDDEY-DFVDQLAAEGLTPEYITI--DIAHG------------------------------- 122 (326)
T ss_pred HHHhccccccEEEEEecCCHHHH-HHHHHHHhcCCCCCEEEE--ECCCC-------------------------------
Confidence 23333234444444444433 33344445654 88876 43210
Q ss_pred CCCchhhHHHhhhhcCCCccHHHHHHHHHccC-ccEEEEeccCHHHHHHHHHhCCcEEEEecCcccCC------CCCcc-
Q 015722 228 KTDDSGLASYVANQIDRSLNWKDVKWLQTITS-LPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQL------DYVPA- 299 (402)
Q Consensus 228 ~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~-~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~~~------d~~~~- 299 (402)
+.....+.|+++|+.++ .||++|.+.|.++++.+.++|+|+|.+++|||++. ..+.+
T Consensus 123 ---------------h~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~aGad~i~vg~~~G~~~~t~~~~g~~~~~ 187 (326)
T PRK05458 123 ---------------HSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGG 187 (326)
T ss_pred ---------------chHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHHcCcCEEEECCCCCcccccccccCCCCCc
Confidence 11123466999999996 78887789999999999999999999999999641 12445
Q ss_pred -hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHH--------------------Hhh---hc---
Q 015722 300 -TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVP--------------------FSL---AV--- 352 (402)
Q Consensus 300 -~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l--------------------~~~---~~--- 352 (402)
.+..+.++++.+ ++|||++|||+++.|+.|||++||++||+|++|. ++. ..
T Consensus 188 w~l~ai~~~~~~~--~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG~~~~~~~espg~~~~~~g~~~k~y~g~~~~~~~~~ 265 (326)
T PRK05458 188 WQLAALRWCAKAA--RKPIIADGGIRTHGDIAKSIRFGATMVMIGSLFAGHEESPGKTVEIDGKLYKEYFGSASEFQKGE 265 (326)
T ss_pred cHHHHHHHHHHHc--CCCEEEeCCCCCHHHHHHHHHhCCCEEEechhhcCCccCCCceeeecchhHHHhhCcHhhhcccc
Confidence 445688888876 7999999999999999999999999999999987 110 00
Q ss_pred ----CChH-------HHHHHHHHHHHHHHHHHHHhCCCChhhhcccceec
Q 015722 353 ----DGEA-------GVRKVLQMLRDEFELTMALSGCRSLKEITRNHIVT 391 (402)
Q Consensus 353 ----~G~~-------gv~~~i~~l~~el~~~m~~~G~~~i~el~~~~l~~ 391 (402)
.|.+ .+.+++..+..+|+..|.++|+.+|.||++..++.
T Consensus 266 ~~~~eG~e~~v~~~G~l~~~l~~l~~gLr~~m~~~Ga~~i~el~~~~~v~ 315 (326)
T PRK05458 266 YKNVEGKKILVPHKGSLKDTLTEMEQDLQSSISYAGGRDLDAIRKVDYVI 315 (326)
T ss_pred ccccCCceEEecccCCHHHHHHHHHHHHHHHHHHhCCCCHHHHhcCCEEE
Confidence 2333 47889999999999999999999999999764443
No 19
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=99.96 E-value=1.8e-27 Score=231.34 Aligned_cols=255 Identities=23% Similarity=0.274 Sum_probs=194.7
Q ss_pred hhhcccccccc--cCCCCCCccceeecCc-----ccCCceeecccccccccCChhhHHHHHHHHHcCCeEEecCCccCCH
Q 015722 76 AFSRILFRPRI--LRDVSKIDMTTTVLGF-----NISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSV 148 (402)
Q Consensus 76 ~~~~~~l~pr~--l~~~~~~d~st~i~G~-----~l~~Pi~iAPm~~~~~~~~~ge~ala~aa~~~G~~~~vs~~~~~s~ 148 (402)
.|+|+.|+|+. +.+.+++||+++|..+ .+..||+-|.|-.. ++.++|.+.++.|..++++- ++++
T Consensus 9 ~f~DVll~P~~s~v~sR~evdl~~~~~~~~~~~~~~~iPii~AnMdtv------~~~~mA~~la~~g~~~~iHk--~~~~ 80 (343)
T TIGR01305 9 DFKDVLLRPKRSTLKSRADVELERTFTFRNSKQTYSGVPIIAANMDTV------GTFEMAAALSQHSIFTAIHK--HYSV 80 (343)
T ss_pred CccceEEecCcCccCcHHHceeeEEEccccCCceeeCCceEecCCCcc------cCHHHHHHHHHCCCeEEEee--CCCH
Confidence 69999999974 4566899999999744 78999999999655 38899999999999999964 4566
Q ss_pred HHHhh----cCCCc-eEEEEeecCChhHHHHHHHHHHHc--CCcEEEEecCCCCCCchhHHHhhhcCCCCcccccccccc
Q 015722 149 EEVSS----TGPGI-RFFQLYVTKHRNVDAQLVKRAERA--GFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGL 221 (402)
Q Consensus 149 eei~~----~~~~~-~~~QLy~~~d~~~~~~~l~ra~~~--G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~ 221 (402)
|+.++ ..+.. ..+-+-.....+ ..+.++...++ +.+.|+| |+.. +
T Consensus 81 e~~~~~v~~~~~~~~~~~~vsvG~~~~-d~er~~~L~~a~~~~d~ivi--D~Ah----------G--------------- 132 (343)
T TIGR01305 81 DEWKAFATNSSPDCLQNVAVSSGSSDN-DLEKMTSILEAVPQLKFICL--DVAN----------G--------------- 132 (343)
T ss_pred HHHHHHHHhhcccccceEEEEeccCHH-HHHHHHHHHhcCCCCCEEEE--ECCC----------C---------------
Confidence 65332 22211 111112222222 23344444445 4888776 4321 1
Q ss_pred ccccCCCCCchhhHHHhhhhcCCCccHHHHHHHHHccCccEEEEe-ccCHHHHHHHHHhCCcEEEEe-----cCcccCCC
Q 015722 222 YIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKG-VLTAEDASLAIQYGAAGIIVS-----NHGARQLD 295 (402)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~Pv~vK~-~~~~~da~~a~~aGad~I~vs-----n~gg~~~d 295 (402)
+.....+.|+|+|+.|+.+.++|| +.|+++++.++++|||+|.|+ +|++|+++
T Consensus 133 ---------------------hs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~ikVgiGpGSicttR~~~ 191 (343)
T TIGR01305 133 ---------------------YSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRTKT 191 (343)
T ss_pred ---------------------cHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCEEEEcccCCCcccCceeC
Confidence 222356889999999988888898 899999999999999999998 88899988
Q ss_pred CCc-chHHHHHHHHHHhcC-CCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHH--------------------Hhhhc-
Q 015722 296 YVP-ATVMALEEVVQAAKG-RVPVFLDGGVRRGTDVFKALALGASGVFVGRPVP--------------------FSLAV- 352 (402)
Q Consensus 296 ~~~-~~~~~l~~i~~~~~~-~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l--------------------~~~~~- 352 (402)
+.. |.+++|++++++++. ++|||+||||+++.|++|||++|||+||+|+.+. ++++.
T Consensus 192 Gvg~pqltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA~GAd~VMlG~llAG~~Espg~~i~~~G~~~K~yrGMgS~ 271 (343)
T TIGR01305 192 GVGYPQLSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFGAGADFVMLGGMFAGHTESGGEVIERNGRKFKLFYGMSSD 271 (343)
T ss_pred CCCcCHHHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHHcCCCEEEECHhhhCcCcCcceeEeECCEEEEEEeccchH
Confidence 754 899999999998865 7999999999999999999999999999998652 11111
Q ss_pred ----------------CCh-------HHHHHHHHHHHHHHHHHHHHhCCCChhhhccc
Q 015722 353 ----------------DGE-------AGVRKVLQMLRDEFELTMALSGCRSLKEITRN 387 (402)
Q Consensus 353 ----------------~G~-------~gv~~~i~~l~~el~~~m~~~G~~~i~el~~~ 387 (402)
+|. ..+.+++..+...|+..|.++|..+|.||++.
T Consensus 272 ~Am~~~~g~~~ry~~~EG~e~~vp~kG~v~~~l~~l~gGlrs~m~Y~Ga~~i~el~~~ 329 (343)
T TIGR01305 272 TAMKKHAGGVAEYRASEGKTVEVPYRGDVENTILDILGGLRSACTYVGAAKLKELSKR 329 (343)
T ss_pred HHHhhccCcccccccccCceEEeccCCcHHHHHHHHHHHHHHHhhccCcCcHHHHHhC
Confidence 010 02788999999999999999999999999654
No 20
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=99.94 E-value=1.7e-25 Score=226.73 Aligned_cols=273 Identities=24% Similarity=0.227 Sum_probs=190.3
Q ss_pred ccceeecC-----cccCCceeecccccccccCChhhHHHHHHHHHcCCeEEecCCccCCHHHHhhcCCCceEEEEeecCC
Q 015722 94 DMTTTVLG-----FNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKH 168 (402)
Q Consensus 94 d~st~i~G-----~~l~~Pi~iAPm~~~~~~~~~ge~ala~aa~~~G~~~~vs~~~~~s~eei~~~~~~~~~~QLy~~~d 168 (402)
+.++++.+ ..++.||+++||+++.+ .++...+++.+++++|....+++. ..+.+++.... ....|+- ...
T Consensus 61 ~~~~~~g~~~~~~~~i~~Pi~~~~Ms~Gs~-s~~a~~aLa~aa~~aG~~~~~Geg-g~~~~~~~~~~--~~i~q~~-~~~ 135 (392)
T cd02808 61 DDRVTIGPNAEKPLKLDSPFNISAMSFGAL-SKEAKEALAIGAALAGTASNTGEG-GELPEEREGGG--DIIKQVA-SGR 135 (392)
T ss_pred ccceeeccccCCccccccceEecCCCCCcc-cHHHHHHHHHHHHhcCCceeecCC-CCCHHHHhhhh--heEEEec-CCC
Confidence 33555544 45689999999998765 445567999999999999888764 46677765332 2345542 222
Q ss_pred hhHHHHHHHHHHHcCCcEEEEecCCCCC-CchhHHHhhhcCCCC-ccccccccccccccCCCCCchhhHHHhhhhcCCCc
Q 015722 169 RNVDAQLVKRAERAGFKAIALTVDTPRL-GRREADIKNRFVLPP-HLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSL 246 (402)
Q Consensus 169 ~~~~~~~l~ra~~~G~~ai~itvd~p~~-g~r~~d~r~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 246 (402)
.......++. +++|.|-+..-.. | .+-.+|. |++..-... ......++.+++..++++
T Consensus 136 fGv~~~~~~~-----~~~ieik~~QGAkpg-------~gg~l~~~Kv~~eiA~~--------r~~~~g~~~isp~~~~~~ 195 (392)
T cd02808 136 FGVRPEYLNK-----ADAIEIKIGQGAKPG-------EGGHLPGEKVTEEIAKI--------RGIPPGVDLISPPPHHDI 195 (392)
T ss_pred CccCHHHccc-----CcEEEEEeccCCCCC-------CCCccccccCCHHHHHH--------hCCCCCccccCCCCCCCC
Confidence 2222222221 5667766552210 1 1111221 222110000 000011233443344554
Q ss_pred c-----HHHHHHHHHccC-ccEEEEecc--CHHHHHHHHHhC-CcEEEEecCcccC--------CCCCcchHHHHHHHHH
Q 015722 247 N-----WKDVKWLQTITS-LPILVKGVL--TAEDASLAIQYG-AAGIIVSNHGARQ--------LDYVPATVMALEEVVQ 309 (402)
Q Consensus 247 ~-----~~~i~~lr~~~~-~Pv~vK~~~--~~~da~~a~~aG-ad~I~vsn~gg~~--------~d~~~~~~~~l~~i~~ 309 (402)
. .+.|+++|+.++ +||++|++. +.+++..+.+.| +|+|+|+||+|.+ .+++.++...|.++++
T Consensus 196 ~~~~~l~~~I~~lr~~~~~~pV~vK~~~~~~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v~~ 275 (392)
T cd02808 196 YSIEDLAQLIEDLREATGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQ 275 (392)
T ss_pred CCHHHHHHHHHHHHHhCCCceEEEEECCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHHHH
Confidence 3 467999999998 999999986 467766666666 9999999996543 3568899999999988
Q ss_pred Hh-----cCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHHHhhhcC-----------------------------Ch
Q 015722 310 AA-----KGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVD-----------------------------GE 355 (402)
Q Consensus 310 ~~-----~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~~~~~~-----------------------------G~ 355 (402)
.+ +.++|||++|||+++.|++|+|++|||+|++||++++++.|. |.
T Consensus 276 ~~~~~~~~~~i~viasGGI~~g~Dv~kalaLGAd~V~ig~~~l~al~c~~~~~c~~~~cP~Giat~~~~~~~~~~~~~~~ 355 (392)
T cd02808 276 ALVKNGLRDRVSLIASGGLRTGADVAKALALGADAVGIGTAALIALGCIQARKCHTNTCPVGVATQDPELRRRLDVEGKA 355 (392)
T ss_pred HHHHcCCCCCCeEEEECCCCCHHHHHHHHHcCCCeeeechHHHHhcchHHHHhcCCCCCCcccccCChHhhhhcCCchHH
Confidence 76 247999999999999999999999999999999999988654 77
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCChhhhcccceec
Q 015722 356 AGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIVT 391 (402)
Q Consensus 356 ~gv~~~i~~l~~el~~~m~~~G~~~i~el~~~~l~~ 391 (402)
++|.++++.+.+||+.+|..+|+++++++++.++..
T Consensus 356 ~~v~~~~~~~~~el~~~m~~~G~~~~~~l~~~~l~~ 391 (392)
T cd02808 356 ERVANYLKSLAEELRELAAALGKRSLELLGRSDLLA 391 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCChHHCCHHHhhc
Confidence 899999999999999999999999999999887643
No 21
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.94 E-value=2.2e-25 Score=223.15 Aligned_cols=289 Identities=21% Similarity=0.274 Sum_probs=189.9
Q ss_pred hhhcccccccccC--CCCCCccceeecCcccCCceeecccccccccCChhhHHHHHHHHHcCCeEEecC-C---ccCCHH
Q 015722 76 AFSRILFRPRILR--DVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSS-W---ATSSVE 149 (402)
Q Consensus 76 ~~~~~~l~pr~l~--~~~~~d~st~i~G~~l~~Pi~iAPm~~~~~~~~~ge~ala~aa~~~G~~~~vs~-~---~~~s~e 149 (402)
.||++.|+|. +. +.+++||++.+.+..++.||+++||.+.+ +.+++.+++++|...+++. . ...+.+
T Consensus 17 ~fddV~lvp~-~~~~~~~dvdls~~~~~~~i~~Piv~a~M~gVt------~~~la~avs~~GglGvl~~~gl~~~~~~~e 89 (368)
T PRK08649 17 GLDEIAIVPS-RRTRDPEDVSTSWQIDAYRFEIPIIASPMDAVV------SPETAIELGKLGGLGVLNLEGLWTRYEDPE 89 (368)
T ss_pred CcceEEEeCC-CCCCCHHHceeeeeecceeccCcEeccCCcccC------CHHHHHHHHhCCCceEEeeccccccCCCHH
Confidence 6999999998 53 55789999999999999999999998765 7799999999999777762 1 223455
Q ss_pred HHhhc----CCC---ceEEEEe-ecCChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCcccccccccc
Q 015722 150 EVSST----GPG---IRFFQLY-VTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGL 221 (402)
Q Consensus 150 ei~~~----~~~---~~~~QLy-~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~ 221 (402)
++.+. .+. ...-+++ -+.+++...++++.+++++ +.+++... .....++.... ...++..-. +
T Consensus 90 ~l~~qi~~~~~~~~~~~~~~~~~~P~~p~l~~~iv~~~~~~~---V~v~vr~~--~~~~~e~a~~l-~eaGvd~I~---v 160 (368)
T PRK08649 90 PILDEIASLGKDEATRLMQELYAEPIKPELITERIAEIRDAG---VIVAVSLS--PQRAQELAPTV-VEAGVDLFV---I 160 (368)
T ss_pred HHHHHHHhcCcHHHHHHHHHhhcCCCCHHHHHHHHHHHHhCe---EEEEEecC--CcCHHHHHHHH-HHCCCCEEE---E
Confidence 44321 110 0001111 1345666667777776654 22222110 00000110000 000000000 0
Q ss_pred ccccCCCCCchhhHHHhhhhcCCCccHHHHHHHHHccCccEEEEeccCHHHHHHHHHhCCcEEEEecCccc------CCC
Q 015722 222 YIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGAR------QLD 295 (402)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~------~~d 295 (402)
+... ..+.+. .+.-.|+.+.++++..++||+++.+.+.++++.++++|||+|.+..++|+ ...
T Consensus 161 hgrt-------~~~~h~----~~~~~~~~i~~~ik~~~ipVIaG~V~t~e~A~~l~~aGAD~V~VG~G~Gs~~~t~~~~g 229 (368)
T PRK08649 161 QGTV-------VSAEHV----SKEGEPLNLKEFIYELDVPVIVGGCVTYTTALHLMRTGAAGVLVGIGPGAACTSRGVLG 229 (368)
T ss_pred eccc-------hhhhcc----CCcCCHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCEEEECCCCCcCCCCcccCC
Confidence 0000 001111 12225676666766689999998899999999999999999999744442 123
Q ss_pred CCcchHHHHHHHHHHhc--------CCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHHHhhhcC--------------
Q 015722 296 YVPATVMALEEVVQAAK--------GRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVD-------------- 353 (402)
Q Consensus 296 ~~~~~~~~l~~i~~~~~--------~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~~~~~~-------------- 353 (402)
.+.+.+.++.+++++.. .++|||++|||+++.|++|||++|||+||+|++|.....+.
T Consensus 230 ~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~diakAlalGAd~Vm~Gs~fa~t~Espg~~~~~gm~s~~~~ 309 (368)
T PRK08649 230 IGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDIAKAIACGADAVMLGSPLARAAEAPGRGWHWGMAAPHPS 309 (368)
T ss_pred CCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHHHHHHcCCCeecccchhcccccCCCcccccCcccCCCc
Confidence 36778888888875421 15999999999999999999999999999999986543221
Q ss_pred ---Ch-------HHHHHHHH----------HHHHHHHHHHHHhCCCChhhhcccceec
Q 015722 354 ---GE-------AGVRKVLQ----------MLRDEFELTMALSGCRSLKEITRNHIVT 391 (402)
Q Consensus 354 ---G~-------~gv~~~i~----------~l~~el~~~m~~~G~~~i~el~~~~l~~ 391 (402)
|. ..+.+++. .+...|+..|.++|+.+|+||++..++.
T Consensus 310 ~~eg~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~l~~~m~~~g~~~~~~~~~~~~~~ 367 (368)
T PRK08649 310 LPRGTRIKVGTTGSLEQILFGPSHLPDGTHNLVGALRRSMATLGYSDLKEFQKVEVVV 367 (368)
T ss_pred CCCceEEeCCCcCcHHHHhcCcccccchHHHHHHHHHHHHHhcCCCcHHHHhhcCeEe
Confidence 11 12777877 9999999999999999999999876653
No 22
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=99.93 E-value=1.3e-24 Score=215.27 Aligned_cols=257 Identities=25% Similarity=0.333 Sum_probs=193.6
Q ss_pred hhhccccccccc-CCCCCCccceeecC-cccCCceeecccccccccCChhhHHHHHHHHHcCCeEEecCCccCCHHHHhh
Q 015722 76 AFSRILFRPRIL-RDVSKIDMTTTVLG-FNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSS 153 (402)
Q Consensus 76 ~~~~~~l~pr~l-~~~~~~d~st~i~G-~~l~~Pi~iAPm~~~~~~~~~ge~ala~aa~~~G~~~~vs~~~~~s~eei~~ 153 (402)
.||++.|+|... .+.+++|++|+|.+ ..++.||+.|||.+.+ +..++.+.+++|...++.. +.+++++.+
T Consensus 3 ~~ddv~l~p~~~~~~~~~vdl~t~l~~~~~l~~Piv~apM~~vt------~~~ma~ava~~GglGvi~~--~~~~~~~~~ 74 (325)
T cd00381 3 TFDDVLLVPGYSTVLPSEVDLSTKLTKNITLNIPLVSAPMDTVT------ESEMAIAMARLGGIGVIHR--NMSIEEQAE 74 (325)
T ss_pred CcccEEEeCCCCCCCHHHceeeEEecCccccCCCEEecCCCcCC------cHHHHHHHHHCCCEEEEeC--CCCHHHHHH
Confidence 599999999764 46788999999988 8899999999998765 6789999999999888863 345555432
Q ss_pred c---CCCceE-EEEeecCChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCC
Q 015722 154 T---GPGIRF-FQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKT 229 (402)
Q Consensus 154 ~---~~~~~~-~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~ 229 (402)
. ..+++. .+. ...+ +...+.++.+.++|++.|+|+....
T Consensus 75 ~i~~vk~~l~v~~~-~~~~-~~~~~~~~~l~eagv~~I~vd~~~G----------------------------------- 117 (325)
T cd00381 75 EVRKVKGRLLVGAA-VGTR-EDDKERAEALVEAGVDVIVIDSAHG----------------------------------- 117 (325)
T ss_pred HHHHhccCceEEEe-cCCC-hhHHHHHHHHHhcCCCEEEEECCCC-----------------------------------
Confidence 2 112222 232 2222 2334566666778999888754210
Q ss_pred CchhhHHHhhhhcCCCccHHHHHHHHHccC-ccEEEEeccCHHHHHHHHHhCCcEEEEecCccc------CCCCCcchHH
Q 015722 230 DDSGLASYVANQIDRSLNWKDVKWLQTITS-LPILVKGVLTAEDASLAIQYGAAGIIVSNHGAR------QLDYVPATVM 302 (402)
Q Consensus 230 ~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~-~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~------~~d~~~~~~~ 302 (402)
++....+.++++++..+ +||++..+.+.++|+.+.++|+|+|++...+|. ....+.+.+.
T Consensus 118 -------------~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~ 184 (325)
T cd00381 118 -------------HSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQAT 184 (325)
T ss_pred -------------CcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhcCCCEEEECCCCCcCcccceeCCCCCCHHH
Confidence 11123467899998874 889888889999999999999999999533221 1345778899
Q ss_pred HHHHHHHHhcC-CCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHHHhhhcC----------------------------
Q 015722 303 ALEEVVQAAKG-RVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVD---------------------------- 353 (402)
Q Consensus 303 ~l~~i~~~~~~-~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~~~~~~---------------------------- 353 (402)
.+.++.+.+.. ++|||++|||+++.|+.|+|++||++||+||.|.-...+.
T Consensus 185 ~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~GA~~VmiGt~fa~t~Es~g~~~~~~g~~~~~~~g~~s~~~~~~~~~ 264 (325)
T cd00381 185 AVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVMLGSLLAGTDESPGEYIEINGKRYKEYRGMGSLGAMKKGGG 264 (325)
T ss_pred HHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHcCCCEEEecchhcccccCCCcEEEECCeeeeeEecccchhhhhcCcc
Confidence 99999887643 6999999999999999999999999999999886422110
Q ss_pred --------------C-------hHHHHHHHHHHHHHHHHHHHHhCCCChhhhccccee
Q 015722 354 --------------G-------EAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 390 (402)
Q Consensus 354 --------------G-------~~gv~~~i~~l~~el~~~m~~~G~~~i~el~~~~l~ 390 (402)
| ...+.+.+..+...|+..|.++|+.+|+||++....
T Consensus 265 ~~~~~~~~~~~~~eg~~~~v~~~g~~~~~~~~~~~glr~~~~y~G~~~l~~~~~~~~~ 322 (325)
T cd00381 265 DRYFGEEAKKLVPEGVEGIVPYKGSVKDVLPQLVGGLRSSMGYCGAKSLKELQEKARF 322 (325)
T ss_pred ccccccccccccCCceEEEEecCCcHHHHHHHHHHHHHHHHHhcCCCcHHHHHhcCeE
Confidence 1 012888999999999999999999999999987543
No 23
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=99.93 E-value=8.7e-25 Score=218.42 Aligned_cols=290 Identities=21% Similarity=0.273 Sum_probs=186.3
Q ss_pred Hhhhccccccc-ccCCCCCCccceeecCcccCCceeecccccccccCChhhHHHHHHHHHcCCeEEecCC----ccCCHH
Q 015722 75 NAFSRILFRPR-ILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSW----ATSSVE 149 (402)
Q Consensus 75 ~~~~~~~l~pr-~l~~~~~~d~st~i~G~~l~~Pi~iAPm~~~~~~~~~ge~ala~aa~~~G~~~~vs~~----~~~s~e 149 (402)
..||++.++|. .-++.+++||++++.+.+++.||++|||++.+ +.+++..|+++|.+.++|.. .....+
T Consensus 13 ~~~d~i~~vp~~~t~~~~~v~~~~~i~~~~l~~PivlAPMagVt------d~~fr~~~~~~Galgvvsaegl~~~~~~~~ 86 (369)
T TIGR01304 13 YSLDDISVVPSRRTRSSKDVDTAWQIDAYRFELPFIAHPMDALV------SPEFAIELGELGGLGVLNLEGLWGRHEDPD 86 (369)
T ss_pred CCcceEEEcCCCCCCChhhccceeEEcceecCCceeecCCCccc------CHHHHHHHHHcCCcccccchHHHhcCCCHH
Confidence 47999999996 55788899999999999999999999999875 78999999999997777631 112222
Q ss_pred HHh----hcCCC-------ceEEEEee-cCChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCcccccc
Q 015722 150 EVS----STGPG-------IRFFQLYV-TKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKN 217 (402)
Q Consensus 150 ei~----~~~~~-------~~~~QLy~-~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~ 217 (402)
.+. ..... ....++|. +.+++.+.++++.+++++.. +-+.++ |. ...++.... ...+...
T Consensus 87 ~~~~QI~g~~~~~~~a~aa~~~~e~~~~~~~p~l~~~ii~~vr~a~Vt-vkiRl~-~~---~~~e~a~~l-~eAGad~-- 158 (369)
T TIGR01304 87 PAIAKIAEAYEEGDQAAATRLLQELHAAPLKPELLGERIAEVRDSGVI-TAVRVS-PQ---NAREIAPIV-VKAGADL-- 158 (369)
T ss_pred HHHHHHhhcCCChHHHHHHHHHHHcCCCccChHHHHHHHHHHHhcceE-EEEecC-Cc---CHHHHHHHH-HHCCCCE--
Confidence 221 10000 00011111 23455555555555555411 111111 00 000110000 0000000
Q ss_pred ccccccccCCCCCchhhHHHhhhhcCCCccHHHHHHHHHccCccEEEEeccCHHHHHHHHHhCCcEEEEecCcccC----
Q 015722 218 YEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQ---- 293 (402)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~~---- 293 (402)
+. +..+ .-.+++. ...-.|..+.++++..++||+++++.+.++++.++++|||+|.++.+|+..
T Consensus 159 ---I~---ihgr--t~~q~~~----sg~~~p~~l~~~i~~~~IPVI~G~V~t~e~A~~~~~aGaDgV~~G~gg~~~~~~~ 226 (369)
T TIGR01304 159 ---LV---IQGT--LVSAEHV----STSGEPLNLKEFIGELDVPVIAGGVNDYTTALHLMRTGAAGVIVGPGGANTTRLV 226 (369)
T ss_pred ---EE---Eecc--chhhhcc----CCCCCHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCEEEECCCCCcccccc
Confidence 00 0000 0001111 112357888888888899999988999999999999999999965444422
Q ss_pred CCCCcchHHHHHHHHHHh-------cC-CCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHHHhhhcCC-----------
Q 015722 294 LDYVPATVMALEEVVQAA-------KG-RVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDG----------- 354 (402)
Q Consensus 294 ~d~~~~~~~~l~~i~~~~-------~~-~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~~~~~~G----------- 354 (402)
+..+.+....+.+++++. ++ .+|||++|||+++.|++|||++|||+|++|++|+.+..+.|
T Consensus 227 lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~di~kAlAlGAdaV~iGt~~a~a~Eapg~~~~w~~~~~~ 306 (369)
T TIGR01304 227 LGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIETSGDLVKAIACGADAVVLGSPLARAAEAPGRGYFWPAAAAH 306 (369)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHHcCCCEeeeHHHHHhhhcCCCCCCccchhhcC
Confidence 223567777888776543 22 49999999999999999999999999999999986543321
Q ss_pred ------------hHH----HHHHH----------HHHHHHHHHHHHHhCCCChhhhccccee
Q 015722 355 ------------EAG----VRKVL----------QMLRDEFELTMALSGCRSLKEITRNHIV 390 (402)
Q Consensus 355 ------------~~g----v~~~i----------~~l~~el~~~m~~~G~~~i~el~~~~l~ 390 (402)
..| +++++ .+|...|++.|..+|+.+++|+++..+.
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~n~~g~~~~~~~~~g~~~~~~~~~~~~~ 368 (369)
T TIGR01304 307 PRLPRGVVTESGTVGEAPTLEEILHGPSTLPDGVENFEGGLKRAMAKCGYTDLKEFQKVSLT 368 (369)
T ss_pred ccCCccccccccccCCCCcHHHHeeCCCCCCcchhhhHHHHHHHHHHcCchhhhhhhhccee
Confidence 112 44554 3678899999999999999999987654
No 24
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=99.92 E-value=6.4e-24 Score=209.97 Aligned_cols=256 Identities=24% Similarity=0.336 Sum_probs=180.8
Q ss_pred hhhccccccccc---CCCCCCccceee-cCcccCCceeecccccccccCChhhHHHHHHHHHcCCeEEecCCccCCHHHH
Q 015722 76 AFSRILFRPRIL---RDVSKIDMTTTV-LGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEV 151 (402)
Q Consensus 76 ~~~~~~l~pr~l---~~~~~~d~st~i-~G~~l~~Pi~iAPm~~~~~~~~~ge~ala~aa~~~G~~~~vs~~~~~s~eei 151 (402)
.||++.|+|... .+..++|+++.+ -+.+++.||+-|||...+ |..+|.+.++.|...++.- ++++|+.
T Consensus 4 tfdDVllvP~~s~v~~s~~dv~~~~~~~~~~~l~iPivsa~MDtVt------e~~mAiama~~Gglgvih~--~~~~e~q 75 (352)
T PF00478_consen 4 TFDDVLLVPGRSTVLPSRSDVSLSTKLTRNITLKIPIVSAPMDTVT------ESEMAIAMARLGGLGVIHR--NMSIEEQ 75 (352)
T ss_dssp -GGGEEEE--SBSSTGGGGG-BEEEESSTSEEESSSEEE-SSTTTS------SHHHHHHHHHTTSEEEEES--SSCHHHH
T ss_pred ccccEEEecCCCCCCCCHhheECcccccCCEeecCceEecCccccc------hHHHHHHHHHhcCCceecC--CCCHHHH
Confidence 699999999873 455666666556 679999999999996554 7799999999999999964 4555542
Q ss_pred -------hhcCC-------CceEEEEeecCChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCcccccc
Q 015722 152 -------SSTGP-------GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKN 217 (402)
Q Consensus 152 -------~~~~~-------~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~ 217 (402)
++..+ +.+.+-..+.... ...+.++...++|++.|+|. ++. +
T Consensus 76 ~~~v~~vK~~~~~a~~d~~~~l~V~aavg~~~-~~~er~~~L~~agvD~ivID--~a~----------g----------- 131 (352)
T PF00478_consen 76 AEEVKKVKRYYPNASKDEKGRLLVAAAVGTRD-DDFERAEALVEAGVDVIVID--SAH----------G----------- 131 (352)
T ss_dssp HHHHHHHHTHHTTHHBHTTSCBCEEEEEESST-CHHHHHHHHHHTT-SEEEEE---SS----------T-----------
T ss_pred HHHHhhhccccccccccccccceEEEEecCCH-HHHHHHHHHHHcCCCEEEcc--ccC----------c-----------
Confidence 22111 2222222222222 12344555566899999873 321 1
Q ss_pred ccccccccCCCCCchhhHHHhhhhcCCCccHHHHHHHHHccC-ccEEEEeccCHHHHHHHHHhCCcEEEEecCcccC---
Q 015722 218 YEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITS-LPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQ--- 293 (402)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~-~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~~--- 293 (402)
+.....+.++++|+.++ +||++..+.|.+.++.++++|||+|.|.-.+|..
T Consensus 132 -------------------------~s~~~~~~ik~ik~~~~~~~viaGNV~T~e~a~~L~~aGad~vkVGiGpGsiCtT 186 (352)
T PF00478_consen 132 -------------------------HSEHVIDMIKKIKKKFPDVPVIAGNVVTYEGAKDLIDAGADAVKVGIGPGSICTT 186 (352)
T ss_dssp -------------------------TSHHHHHHHHHHHHHSTTSEEEEEEE-SHHHHHHHHHTT-SEEEESSSSSTTBHH
T ss_pred -------------------------cHHHHHHHHHHHHHhCCCceEEecccCCHHHHHHHHHcCCCEEEEeccCCccccc
Confidence 11223467899999985 9999999999999999999999999997544431
Q ss_pred ---CCCCcchHHHHHHHHHHhcC-CCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHH--------------------Hh
Q 015722 294 ---LDYVPATVMALEEVVQAAKG-RVPVFLDGGVRRGTDVFKALALGASGVFVGRPVP--------------------FS 349 (402)
Q Consensus 294 ---~d~~~~~~~~l~~i~~~~~~-~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l--------------------~~ 349 (402)
.-.|.|.+.++.+++++..+ .+|||+||||+++.|++|||++|||+||+|++|- ++
T Consensus 187 r~v~GvG~PQ~tAv~~~a~~a~~~~v~iIADGGi~~sGDi~KAla~GAd~VMlG~llAgt~EsPG~~~~~~g~~~K~yrG 266 (352)
T PF00478_consen 187 REVTGVGVPQLTAVYECAEAARDYGVPIIADGGIRTSGDIVKALAAGADAVMLGSLLAGTDESPGEVIYIDGKRYKKYRG 266 (352)
T ss_dssp HHHHSBSCTHHHHHHHHHHHHHCTTSEEEEESS-SSHHHHHHHHHTT-SEEEESTTTTTBTTSSSEEEEETTEEEEEEEE
T ss_pred ccccccCCcHHHHHHHHHHHhhhccCceeecCCcCcccceeeeeeecccceeechhhccCcCCCCceEEECCeEEEEecc
Confidence 23478899999999987753 7999999999999999999999999999999772 12
Q ss_pred hhc------------------------CCh-------HHHHHHHHHHHHHHHHHHHHhCCCChhhhcccc
Q 015722 350 LAV------------------------DGE-------AGVRKVLQMLRDEFELTMALSGCRSLKEITRNH 388 (402)
Q Consensus 350 ~~~------------------------~G~-------~gv~~~i~~l~~el~~~m~~~G~~~i~el~~~~ 388 (402)
++. .|. ..+.+++..|...|+..|.++|..+|.||++..
T Consensus 267 MgS~~A~~~~~~~~~ry~~~~~~~~v~eGve~~vp~~G~v~~~l~~l~gglrs~m~y~Ga~~i~el~~~~ 336 (352)
T PF00478_consen 267 MGSLGAMKKRRGSGDRYFQAEDKKFVPEGVEGLVPYKGSVSDILPQLVGGLRSGMGYVGARSIKELRKKA 336 (352)
T ss_dssp TTSHHHHHHHSTTGCTCTSSTSSTSSSSBEEEEEE-BB-HHHHHHHHHHHHHHHHHHTTSSBHHHHHHHH
T ss_pred cccHHHHhhccccchhccccccccccccceeecCCCCCCHHHHHHHHHHHHHHHHHhcCcccHHHHHhCC
Confidence 211 111 128899999999999999999999999999874
No 25
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.92 E-value=3.4e-23 Score=208.40 Aligned_cols=256 Identities=21% Similarity=0.263 Sum_probs=184.3
Q ss_pred Hhhhccccccccc-CCCCCCccceeec-CcccCCceeecccccccccCChhhHHHHHHHHHcCCeEEecCCccCCHHHHh
Q 015722 75 NAFSRILFRPRIL-RDVSKIDMTTTVL-GFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVS 152 (402)
Q Consensus 75 ~~~~~~~l~pr~l-~~~~~~d~st~i~-G~~l~~Pi~iAPm~~~~~~~~~ge~ala~aa~~~G~~~~vs~~~~~s~eei~ 152 (402)
..||++.|+|... ...+++|++|.+. ...+..||+.|||.+.+ +..||.+.+++|...+++. +.++|++.
T Consensus 10 ltfdDvll~P~~s~~~~~~vdl~t~lt~~l~l~iPIvsApMd~Vt------~~~lA~AvA~aGGlGvI~~--~~~~e~l~ 81 (404)
T PRK06843 10 LTFDDVSLIPRKSSVLPSEVSLKTQLTKNISLNIPFLSSAMDTVT------ESQMAIAIAKEGGIGIIHK--NMSIEAQR 81 (404)
T ss_pred cCccceEEccCCCccCHHhccccchhhhccCCCCCEecCCCCCCC------CHHHHHHHHHCCCEEEecC--CCCHHHHH
Confidence 3699999999764 3567899999885 57789999999997654 5689999999999999973 46676643
Q ss_pred hcCC--------CceE------------------E------------------------EEee----cCChhHHHHHHHH
Q 015722 153 STGP--------GIRF------------------F------------------------QLYV----TKHRNVDAQLVKR 178 (402)
Q Consensus 153 ~~~~--------~~~~------------------~------------------------QLy~----~~d~~~~~~~l~r 178 (402)
+... ++.. + ||++ ... ..+.+.++.
T Consensus 82 ~eI~~vk~~~~~~~i~~~~d~~~~~~~~~t~~~~~~~~~~~~d~~~~~~~~~a~~d~~~~l~v~aavg~~-~~~~~~v~~ 160 (404)
T PRK06843 82 KEIEKVKTYKFQKTINTNGDTNEQKPEIFTAKQHLEKSDAYKNAEHKEDFPNACKDLNNKLRVGAAVSID-IDTIERVEE 160 (404)
T ss_pred HHHHHHHhhcCCCceeecccccccchhheeccccchHHHHHhhhhhhhhcchhhhhhhcCeEEEEEEeCC-HHHHHHHHH
Confidence 2110 0000 0 0110 111 113344444
Q ss_pred HHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCCccHHHHHHHHHcc
Q 015722 179 AERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTIT 258 (402)
Q Consensus 179 a~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~ 258 (402)
+.++|++.|+| |+.. .++....+.++++|+.+
T Consensus 161 lv~aGvDvI~i--D~a~----------------------------------------------g~~~~~~~~v~~ik~~~ 192 (404)
T PRK06843 161 LVKAHVDILVI--DSAH----------------------------------------------GHSTRIIELVKKIKTKY 192 (404)
T ss_pred HHhcCCCEEEE--ECCC----------------------------------------------CCChhHHHHHHHHHhhC
Confidence 44556665554 2210 12223457799999998
Q ss_pred -CccEEEEeccCHHHHHHHHHhCCcEEEEecCcc-----cCCC-CCcchHHHHHHHHHHhc-CCCeEEEecCCCCHHHHH
Q 015722 259 -SLPILVKGVLTAEDASLAIQYGAAGIIVSNHGA-----RQLD-YVPATVMALEEVVQAAK-GRVPVFLDGGVRRGTDVF 330 (402)
Q Consensus 259 -~~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg-----~~~d-~~~~~~~~l~~i~~~~~-~~i~via~GGI~~g~dv~ 330 (402)
+.+|+++.+.|.++++.+.++|+|+|.++...| ++.+ .|.+.+..+.++.+.+. .++|||++|||+++.|+.
T Consensus 193 p~~~vi~g~V~T~e~a~~l~~aGaD~I~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~ 272 (404)
T PRK06843 193 PNLDLIAGNIVTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICIIADGGIRFSGDVV 272 (404)
T ss_pred CCCcEEEEecCCHHHHHHHHHcCCCEEEECCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHH
Confidence 688999999999999999999999999864333 3343 36778888877777653 379999999999999999
Q ss_pred HHHHcCcCEEEEchHHHH--------------------hhhc-----CC-----------------hHH----------H
Q 015722 331 KALALGASGVFVGRPVPF--------------------SLAV-----DG-----------------EAG----------V 358 (402)
Q Consensus 331 kal~lGAd~V~iGr~~l~--------------------~~~~-----~G-----------------~~g----------v 358 (402)
|||++||++||+|++|.- +++. .| +|| +
T Consensus 273 KALalGA~aVmvGs~~agt~Espg~~~~~~g~~~K~yrGmgS~~Am~~~~~~ry~~~~~~~~~~~v~eGveg~v~~~G~v 352 (404)
T PRK06843 273 KAIAAGADSVMIGNLFAGTKESPSEEIIYNGKKFKSYVGMGSISAMKRGSKSRYFQLENNEPKKLVPEGIEGMVPYSGKL 352 (404)
T ss_pred HHHHcCCCEEEEcceeeeeecCCCcEEEECCEEEEEEeccchHHHHhccccccccccccccccccCCCccEEEecCCCCH
Confidence 999999999999998742 1110 00 011 8
Q ss_pred HHHHHHHHHHHHHHHHHhCCCChhhhccc
Q 015722 359 RKVLQMLRDEFELTMALSGCRSLKEITRN 387 (402)
Q Consensus 359 ~~~i~~l~~el~~~m~~~G~~~i~el~~~ 387 (402)
.+++..+..+|+..|.++|+.+|.||+..
T Consensus 353 ~~~~~~l~gglrs~m~y~Ga~~i~el~~~ 381 (404)
T PRK06843 353 KDILTQLKGGLMSGMGYLGAATISDLKIN 381 (404)
T ss_pred HHHHHHHHHHHHHHhhccCCCcHHHHHhc
Confidence 88999999999999999999999999854
No 26
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=99.91 E-value=3.8e-23 Score=202.78 Aligned_cols=238 Identities=20% Similarity=0.272 Sum_probs=173.9
Q ss_pred cceeecCcccCCceeecccccccccCChhhHHHHHHHHHcCCeEEecC---------------------C------ccCC
Q 015722 95 MTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSS---------------------W------ATSS 147 (402)
Q Consensus 95 ~st~i~G~~l~~Pi~iAPm~~~~~~~~~ge~ala~aa~~~G~~~~vs~---------------------~------~~~s 147 (402)
++|+++|.+++.||++||...+. .....+...+.|..++++. + .+..
T Consensus 1 l~~~~~g~~l~npi~~aag~~~~------~~~~~~~~~~~G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~g 74 (300)
T TIGR01037 1 LEVELFGIRFKNPLILASGIMGS------GVESLRRIDRSGAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNPG 74 (300)
T ss_pred CcEEECCEECCCCCEeCCcCCCC------CHHHHHHHHHcCCcEEEeCccccccccCCCCCeEEecccHHhhhccCCCcC
Confidence 47899999999999999953221 2233444555688777651 1 1112
Q ss_pred HHH----Hhhc---CCCceEEEEeecCChhHHHHHHHHHHHcC--CcEEEEecCCCCCCchhHHHhhhcCCCCccccccc
Q 015722 148 VEE----VSST---GPGIRFFQLYVTKHRNVDAQLVKRAERAG--FKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNY 218 (402)
Q Consensus 148 ~ee----i~~~---~~~~~~~QLy~~~d~~~~~~~l~ra~~~G--~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~ 218 (402)
.+. +... .+.|..+||+ ..+.+...+.++.+++++ ++++.+|+.||..- +. +
T Consensus 75 ~~~~~~~~~~~~~~~~~pl~~qi~-g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~--------~~------g---- 135 (300)
T TIGR01037 75 VEAFLEELKPVREEFPTPLIASVY-GSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVK--------GG------G---- 135 (300)
T ss_pred HHHHHHHHHHHhccCCCcEEEEee-cCCHHHHHHHHHHHHhccCccCEEEEECCCCCCC--------CC------c----
Confidence 222 2211 1247899997 567888888999988763 99999999999631 00 0
Q ss_pred cccccccCCCCCchhhHHHhhhhcCCCccHHHHHHHHHccCccEEEEeccCH----HHHHHHHHhCCcEEEEecC-cccC
Q 015722 219 EGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTA----EDASLAIQYGAAGIIVSNH-GARQ 293 (402)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~Pv~vK~~~~~----~da~~a~~aGad~I~vsn~-gg~~ 293 (402)
..+. .++++..+.++++|+.+++||++|+..+. +.++.+.++|+|+|+++|+ .++.
T Consensus 136 -----------------~~l~--~~~~~~~eiv~~vr~~~~~pv~vKi~~~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~ 196 (300)
T TIGR01037 136 -----------------IAIG--QDPELSADVVKAVKDKTDVPVFAKLSPNVTDITEIAKAAEEAGADGLTLINTLRGMK 196 (300)
T ss_pred -----------------cccc--cCHHHHHHHHHHHHHhcCCCEEEECCCChhhHHHHHHHHHHcCCCEEEEEccCCccc
Confidence 0011 24556778999999999999999997554 3477889999999999874 2211
Q ss_pred C------------CC---Ccc----hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHHHhhhcCC
Q 015722 294 L------------DY---VPA----TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDG 354 (402)
Q Consensus 294 ~------------d~---~~~----~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~~~~~~G 354 (402)
. .+ |++ .++.+.++++.+ ++|||++|||++++|+.++|.+|||+|++||++++. +
T Consensus 197 ~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~--~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~----p 270 (300)
T TIGR01037 197 IDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMV--DIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYR----G 270 (300)
T ss_pred cccccCceeeCCCCccccchhhhHHHHHHHHHHHhcC--CCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcC----c
Confidence 1 11 222 246777777776 699999999999999999999999999999999863 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCChhhhccc
Q 015722 355 EAGVRKVLQMLRDEFELTMALSGCRSLKEITRN 387 (402)
Q Consensus 355 ~~gv~~~i~~l~~el~~~m~~~G~~~i~el~~~ 387 (402)
.+++.++++|+.+|+..|+++++|+++.
T Consensus 271 -----~~~~~i~~~l~~~~~~~g~~~~~e~~g~ 298 (300)
T TIGR01037 271 -----FAFKKIIEGLIAFLKAEGFTSIEELIGI 298 (300)
T ss_pred -----hHHHHHHHHHHHHHHHcCCCCHHHHhCc
Confidence 4788999999999999999999999864
No 27
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=99.91 E-value=1.4e-22 Score=197.25 Aligned_cols=256 Identities=19% Similarity=0.186 Sum_probs=187.7
Q ss_pred Hhhhccccccccc--CCCCCCccceeec-----CcccCCceeecccccccccCChhhHHHHHHHHHcCCeEEecCCccCC
Q 015722 75 NAFSRILFRPRIL--RDVSKIDMTTTVL-----GFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSS 147 (402)
Q Consensus 75 ~~~~~~~l~pr~l--~~~~~~d~st~i~-----G~~l~~Pi~iAPm~~~~~~~~~ge~ala~aa~~~G~~~~vs~~~~~s 147 (402)
..|+|+.|+|+.- .+.+++||+.+|. ...+..||+-|+|-.. ++..+|.+.++.|..++++- +++
T Consensus 9 l~f~DVll~P~~s~v~sRsevdl~~~~~~~~~~~~~~giPii~AnMdTV------~~~~mA~~la~~g~~~~iHk--~~~ 80 (346)
T PRK05096 9 LGFKDVLIRPKRSTLKSRSDVELERQFTFKHSGQSWSGVPIIAANMDTV------GTFEMAKALASFDILTAVHK--HYS 80 (346)
T ss_pred CCceeEEEecCcCccccHHHceecceeeeecccccccCCceEecCCCcc------ccHHHHHHHHHCCCeEEEec--CCC
Confidence 3699999999753 4557899988875 3557899999999654 38899999999999999963 466
Q ss_pred HHHHhh----cCCCc-eEEEEeecCChhHHHHHHHHHHH--cCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccc
Q 015722 148 VEEVSS----TGPGI-RFFQLYVTKHRNVDAQLVKRAER--AGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEG 220 (402)
Q Consensus 148 ~eei~~----~~~~~-~~~QLy~~~d~~~~~~~l~ra~~--~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~ 220 (402)
+|+.++ ..+.. ..+-+-.....+.. +.++...+ +|.+.|+| |+.. +
T Consensus 81 ~e~~~~fv~~~~~~~~~~~~vavG~~~~d~-er~~~L~~~~~g~D~ivi--D~Ah----------G-------------- 133 (346)
T PRK05096 81 VEEWAAFVNNSSADVLKHVMVSTGTSDADF-EKTKQILALSPALNFICI--DVAN----------G-------------- 133 (346)
T ss_pred HHHHHHHHHhccccccceEEEEecCCHHHH-HHHHHHHhcCCCCCEEEE--ECCC----------C--------------
Confidence 776433 22111 11112223333333 33333333 58898877 4321 1
Q ss_pred cccccCCCCCchhhHHHhhhhcCCCccHHHHHHHHHcc-CccEEEEeccCHHHHHHHHHhCCcEEEEecCccc----CC-
Q 015722 221 LYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTIT-SLPILVKGVLTAEDASLAIQYGAAGIIVSNHGAR----QL- 294 (402)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~-~~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~----~~- 294 (402)
+.....+.|+++|+.+ +.+|+...+.|.+.++.++++|||+|.|.-..|. +.
T Consensus 134 ----------------------hs~~~i~~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~aGAD~vKVGIGpGSiCtTr~v 191 (346)
T PRK05096 134 ----------------------YSEHFVQFVAKAREAWPDKTICAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRVK 191 (346)
T ss_pred ----------------------cHHHHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHcCCCEEEEcccCCccccCccc
Confidence 2223567899999988 5889988999999999999999999999754442 22
Q ss_pred -CCCcchHHHHHHHHHHhc-CCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHH--------------------Hhhhc
Q 015722 295 -DYVPATVMALEEVVQAAK-GRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVP--------------------FSLAV 352 (402)
Q Consensus 295 -d~~~~~~~~l~~i~~~~~-~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l--------------------~~~~~ 352 (402)
..|.|.+.++.+++++.. ..+|||+||||++..|++|||++|||+||+|+.|- ++++.
T Consensus 192 tGvG~PQltAV~~~a~~a~~~gvpiIADGGi~~sGDI~KAlaaGAd~VMlGsllAGt~EsPGe~~~~~G~~~K~yrGMgS 271 (346)
T PRK05096 192 TGVGYPQLSAVIECADAAHGLGGQIVSDGGCTVPGDVAKAFGGGADFVMLGGMLAGHEESGGEIVEENGEKFMLFYGMSS 271 (346)
T ss_pred cccChhHHHHHHHHHHHHHHcCCCEEecCCcccccHHHHHHHcCCCEEEeChhhcCcccCCCcEEEECCEEEEEEecccc
Confidence 246788899999988764 37999999999999999999999999999999872 22211
Q ss_pred -------CC-------hH----------HHHHHHHHHHHHHHHHHHHhCCCChhhhccc
Q 015722 353 -------DG-------EA----------GVRKVLQMLRDEFELTMALSGCRSLKEITRN 387 (402)
Q Consensus 353 -------~G-------~~----------gv~~~i~~l~~el~~~m~~~G~~~i~el~~~ 387 (402)
.| +| .+.+++..+...|+..|.++|..+|.||++.
T Consensus 272 ~~Am~~~~g~~~ry~~~EG~~~~Vp~kG~v~~~i~~l~gGlrs~m~Y~Ga~~i~el~~~ 330 (346)
T PRK05096 272 ESAMKRHVGGVAEYRAAEGKTVKLPLRGPVENTARDILGGLRSACTYVGASRLKELTKR 330 (346)
T ss_pred HHHHhhccCcccccccccCceEEeccCCcHHHHHHHHHHHHHHHHcccCcCcHHHHHhC
Confidence 00 11 2888999999999999999999999999654
No 28
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=1e-22 Score=201.32 Aligned_cols=251 Identities=24% Similarity=0.270 Sum_probs=197.6
Q ss_pred ecCcccCCceeecccccccccCChhhHHHHHHHHHcCC-eEEecCCccC------CHHHHh--hcC--CCceEEEEeecC
Q 015722 99 VLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGT-IMTLSSWATS------SVEEVS--STG--PGIRFFQLYVTK 167 (402)
Q Consensus 99 i~G~~l~~Pi~iAPm~~~~~~~~~ge~ala~aa~~~G~-~~~vs~~~~~------s~eei~--~~~--~~~~~~QLy~~~ 167 (402)
+....+..++++|||.+.+ |.++++.+++.|. ..++|+|.+. +-+... ... ..|..+||. ..
T Consensus 4 ~~~~~~~~~~~lAPM~gvt------d~~fR~l~~~~ga~~~~~TEmv~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~-gs 76 (323)
T COG0042 4 IGLIELRNRVILAPMAGVT------DLPFRRLARELGAYDLLYTEMVSAKALLHGRKKFLLLLDELEEERPVAVQLG-GS 76 (323)
T ss_pred cccccccCcEEEecCCCCc------cHHHHHHHHHhCCCceEEEccEEEhhhccCCcchhhhcCcCCCCCCEEEEec-CC
Confidence 4456778999999999876 8999999999999 8888888432 111111 111 267899998 78
Q ss_pred ChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCCcc
Q 015722 168 HRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLN 247 (402)
Q Consensus 168 d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 247 (402)
|++.+.+..+.+++.|++.|+||++||.. +++-. +.++.++ .+|++.
T Consensus 77 dp~~l~eaA~~~~~~g~~~IdlN~GCP~~---------------~V~~~----------------g~Ga~Ll--~~p~lv 123 (323)
T COG0042 77 DPELLAEAAKIAEELGADIIDLNCGCPSP---------------KVVKG----------------GAGAALL--KNPELL 123 (323)
T ss_pred CHHHHHHHHHHHHhcCCCEEeeeCCCChH---------------HhcCC----------------Ccchhhc--CCHHHH
Confidence 99999999999999999999999999963 12111 1233444 378888
Q ss_pred HHHHHHHHHccC-ccEEEEecc--------CHHHHHHHHHhCCcEEEEecCccc--CCCCCcchHHHHHHHHHHhcCCCe
Q 015722 248 WKDVKWLQTITS-LPILVKGVL--------TAEDASLAIQYGAAGIIVSNHGAR--QLDYVPATVMALEEVVQAAKGRVP 316 (402)
Q Consensus 248 ~~~i~~lr~~~~-~Pv~vK~~~--------~~~da~~a~~aGad~I~vsn~gg~--~~d~~~~~~~~l~~i~~~~~~~i~ 316 (402)
.+.|+++++.++ +||.||... ..+-++.+.++|++.++| ||.+ |.+.+++.++.+.++++.+++ +|
T Consensus 124 ~~iv~a~~~av~~iPVTVKiRlG~d~~~~~~~~ia~~~~~~g~~~ltV--HgRtr~~~y~~~ad~~~I~~vk~~~~~-ip 200 (323)
T COG0042 124 AEIVKAMVEAVGDIPVTVKIRLGWDDDDILALEIARILEDAGADALTV--HGRTRAQGYLGPADWDYIKELKEAVPS-IP 200 (323)
T ss_pred HHHHHHHHHhhCCCCeEEEEecccCcccccHHHHHHHHHhcCCCEEEE--ecccHHhcCCCccCHHHHHHHHHhCCC-Ce
Confidence 899999999994 999999762 234578899999999999 7765 455678899999999999943 99
Q ss_pred EEEecCCCCHHHHHHHHH-cCcCEEEEch-----HHHHhh---hcCCh---HHHHHHHHHHHHHHHHHHHHhCCCChhhh
Q 015722 317 VFLDGGVRRGTDVFKALA-LGASGVFVGR-----PVPFSL---AVDGE---AGVRKVLQMLRDEFELTMALSGCRSLKEI 384 (402)
Q Consensus 317 via~GGI~~g~dv~kal~-lGAd~V~iGr-----~~l~~~---~~~G~---~gv~~~i~~l~~el~~~m~~~G~~~i~el 384 (402)
||++|+|.+.+|+.+.|. .|+|+||+|| |+++.. ...|+ ....+.++.+.++++.+.++.|...+..+
T Consensus 201 vi~NGdI~s~~~a~~~l~~tg~DgVMigRga~~nP~l~~~i~~~~~g~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 280 (323)
T COG0042 201 VIANGDIKSLEDAKEMLEYTGADGVMIGRGALGNPWLFRQIDYLETGELLPPTLAEVLDILREHLELLLEYYGKKGLRRL 280 (323)
T ss_pred EEeCCCcCCHHHHHHHHHhhCCCEEEEcHHHccCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 999999999999999999 6899999999 556542 22343 45678899999999999999997788888
Q ss_pred cccceecc
Q 015722 385 TRNHIVTH 392 (402)
Q Consensus 385 ~~~~l~~~ 392 (402)
+++.....
T Consensus 281 r~h~~~~~ 288 (323)
T COG0042 281 RKHLGYYL 288 (323)
T ss_pred HHHHHHHh
Confidence 88765543
No 29
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=99.90 E-value=1.5e-21 Score=193.62 Aligned_cols=239 Identities=19% Similarity=0.213 Sum_probs=171.8
Q ss_pred ccceeecCcccCCceeecccccccccCChhhHHHHHHHHHcCCeEEec-CCc----------------------------
Q 015722 94 DMTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLS-SWA---------------------------- 144 (402)
Q Consensus 94 d~st~i~G~~l~~Pi~iAPm~~~~~~~~~ge~ala~aa~~~G~~~~vs-~~~---------------------------- 144 (402)
|++|+++|+++++||++|.-+.+. +....+.+...|..+++. |..
T Consensus 1 dL~v~~~Gl~l~nPv~~ASg~~~~------~~e~~~~~~~~G~Gavv~ktit~~~~~~~gn~~pr~~~~~~~~~~~~~~i 74 (325)
T cd04739 1 DLSTTYLGLSLKNPLVASASPLSR------NLDNIRRLEDAGAGAIVLPSLFEEQIEREAQELDRFLTYGSSFAEALSYF 74 (325)
T ss_pred CceEEECCEecCCCCEeCCcCCCC------CHHHHHHHHHCCCcEEEecccchhhhhhcCCCCCceEeecccCcCccccc
Confidence 689999999999999997543332 334455577777766652 211
Q ss_pred ------cCCHH----HHhhc---CCCceEEEEeecCChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCC
Q 015722 145 ------TSSVE----EVSST---GPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPP 211 (402)
Q Consensus 145 ------~~s~e----ei~~~---~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~ 211 (402)
+..++ ++.+. ...+.++|+. ..+.+...+++++++++|+++|.||+.||... |
T Consensus 75 n~~g~~n~g~~~~~~~i~~~~~~~~~pvi~si~-g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~------------~- 140 (325)
T cd04739 75 PEYGRYNLGPEEYLELIRRAKRAVSIPVIASLN-GVSAGGWVDYARQIEEAGADALELNIYALPTD------------P- 140 (325)
T ss_pred ccccccCcCHHHHHHHHHHHHhccCCeEEEEeC-CCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCC------------C-
Confidence 01111 22221 1356788986 45677788999999999999999999885210 0
Q ss_pred ccccccccccccccCCCCCchhhHHHhhhhcCCCccHHHHHHHHHccCccEEEEeccC----HHHHHHHHHhCCcEEEEe
Q 015722 212 HLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLT----AEDASLAIQYGAAGIIVS 287 (402)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~Pv~vK~~~~----~~da~~a~~aGad~I~vs 287 (402)
+. . +. . .+....+.++++++.+++||++|.... .+.++.+.++|+|+|+++
T Consensus 141 ~~--~----------------g~--~-----~~~~~~eiv~~v~~~~~iPv~vKl~p~~~~~~~~a~~l~~~Gadgi~~~ 195 (325)
T cd04739 141 DI--S----------------GA--E-----VEQRYLDILRAVKSAVTIPVAVKLSPFFSALAHMAKQLDAAGADGLVLF 195 (325)
T ss_pred Cc--c----------------cc--h-----HHHHHHHHHHHHHhccCCCEEEEcCCCccCHHHHHHHHHHcCCCeEEEE
Confidence 00 0 00 0 012345789999999999999998744 356788999999999999
Q ss_pred cCcc-cCCC---------C---Cc----chHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHHHhh
Q 015722 288 NHGA-RQLD---------Y---VP----ATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSL 350 (402)
Q Consensus 288 n~gg-~~~d---------~---~~----~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~~~ 350 (402)
|+.. ...| + |+ -.++.+.++++.+ ++|||++|||+|++|+.++|.+||++|++||++++.
T Consensus 196 nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~--~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ta~~~~- 272 (325)
T cd04739 196 NRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRV--KASLAASGGVHDAEDVVKYLLAGADVVMTTSALLRH- 272 (325)
T ss_pred cCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHccc--CCCEEEECCCCCHHHHHHHHHcCCCeeEEehhhhhc-
Confidence 8742 1111 1 11 1345566666655 799999999999999999999999999999999872
Q ss_pred hcCChHHHHHHHHHHHHHHHHHHHHhCCCChhhhccc
Q 015722 351 AVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRN 387 (402)
Q Consensus 351 ~~~G~~gv~~~i~~l~~el~~~m~~~G~~~i~el~~~ 387 (402)
|+. ++..+.+||+.+|...|+++++|+++.
T Consensus 273 ---gp~----~~~~i~~~L~~~l~~~g~~~i~e~~G~ 302 (325)
T cd04739 273 ---GPD----YIGTLLAGLEAWMEEHGYESVQQLRGS 302 (325)
T ss_pred ---Cch----HHHHHHHHHHHHHHHcCCCCHHHHhcc
Confidence 443 678899999999999999999999984
No 30
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=99.90 E-value=1.1e-21 Score=192.64 Aligned_cols=239 Identities=21% Similarity=0.242 Sum_probs=179.1
Q ss_pred ccceeecCcccCCceeecccccccccCChhhHHHHHHHHHcCCeEEe-cCCcc--------------------------C
Q 015722 94 DMTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTL-SSWAT--------------------------S 146 (402)
Q Consensus 94 d~st~i~G~~l~~Pi~iAPm~~~~~~~~~ge~ala~aa~~~G~~~~v-s~~~~--------------------------~ 146 (402)
|++|+++|++++.||++|+-... .+..+++.+.+.|..+++ .|... .
T Consensus 1 ~l~~~~~G~~~~nPv~~aag~~~------~~~~~~~~~~~~g~g~v~~kti~~~~~~g~~~pr~~~~~~~~~n~~g~~~~ 74 (301)
T PRK07259 1 RLSVELPGLKLKNPVMPASGTFG------FGGEYARFYDLNGLGAIVTKSTTLEPREGNPTPRIAETPGGMLNAIGLQNP 74 (301)
T ss_pred CCceEECCEECCCCcEECCcCCC------CCHHHHHHhhhcCCcEEEeCCCCCCCCCCCCCCcEEecCCceeecCCCCCc
Confidence 68999999999999999873222 134677777788877665 23210 1
Q ss_pred CHH----HHhhc---CCCceEEEEeecCChhHHHHHHHHHHHcC-CcEEEEecCCCCCCchhHHHhhhcCCCCccccccc
Q 015722 147 SVE----EVSST---GPGIRFFQLYVTKHRNVDAQLVKRAERAG-FKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNY 218 (402)
Q Consensus 147 s~e----ei~~~---~~~~~~~QLy~~~d~~~~~~~l~ra~~~G-~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~ 218 (402)
.++ ++.+. ...+..+|+. ..+.+...+.+++++++| +++|.||+.||... ++ .
T Consensus 75 g~~~~~~~~~~~~~~~~~p~i~si~-g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~-------~g-------g---- 135 (301)
T PRK07259 75 GVDAFIEEELPWLEEFDTPIIANVA-GSTEEEYAEVAEKLSKAPNVDAIELNISCPNVK-------HG-------G---- 135 (301)
T ss_pred CHHHHHHHHHHHHhccCCcEEEEec-cCCHHHHHHHHHHHhccCCcCEEEEECCCCCCC-------CC-------c----
Confidence 122 22221 1356889996 567888899999999999 99999999999631 00 0
Q ss_pred cccccccCCCCCchhhHHHhhhhcCCCccHHHHHHHHHccCccEEEEeccCHH----HHHHHHHhCCcEEEEecC-cccC
Q 015722 219 EGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAE----DASLAIQYGAAGIIVSNH-GARQ 293 (402)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~Pv~vK~~~~~~----da~~a~~aGad~I~vsn~-gg~~ 293 (402)
..+. .++.+.++.++++|+.+++||++|+..+.+ .++.+.++|+|+|+++|. .|..
T Consensus 136 -----------------~~~~--~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~~nt~~g~~ 196 (301)
T PRK07259 136 -----------------MAFG--TDPELAYEVVKAVKEVVKVPVIVKLTPNVTDIVEIAKAAEEAGADGLSLINTLKGMA 196 (301)
T ss_pred -----------------cccc--cCHHHHHHHHHHHHHhcCCCEEEEcCCCchhHHHHHHHHHHcCCCEEEEEccccccc
Confidence 0000 245567889999999999999999986543 377889999999999873 1110
Q ss_pred --C----------CC---C----cchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHHHhhhcCC
Q 015722 294 --L----------DY---V----PATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDG 354 (402)
Q Consensus 294 --~----------d~---~----~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~~~~~~G 354 (402)
. .+ + +..++.+.++++.+ ++|||++|||++++|+.+++++|||+|++||++++.
T Consensus 197 ~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~--~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~~----- 269 (301)
T PRK07259 197 IDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAV--DIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFYD----- 269 (301)
T ss_pred cccccCceeecCCcCccCCcCcccccHHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhcC-----
Confidence 0 01 1 22567888888877 799999999999999999999999999999999863
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCChhhhccc
Q 015722 355 EAGVRKVLQMLRDEFELTMALSGCRSLKEITRN 387 (402)
Q Consensus 355 ~~gv~~~i~~l~~el~~~m~~~G~~~i~el~~~ 387 (402)
+ .+++.++++++.+|...|+++++|+.+.
T Consensus 270 P----~~~~~i~~~l~~~~~~~g~~~i~~~~g~ 298 (301)
T PRK07259 270 P----YAFPKIIEGLEAYLDKYGIKSIEEIVGI 298 (301)
T ss_pred c----HHHHHHHHHHHHHHHHcCCCCHHHHhCc
Confidence 3 4678899999999999999999999864
No 31
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=99.90 E-value=2.7e-22 Score=198.57 Aligned_cols=250 Identities=18% Similarity=0.177 Sum_probs=187.2
Q ss_pred eecCcccCCceeecccccccccCChhhHHHHHHHHHcCCeEEecCCccCCHH----H----Hhhc--CCCceEEEEeecC
Q 015722 98 TVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVE----E----VSST--GPGIRFFQLYVTK 167 (402)
Q Consensus 98 ~i~G~~l~~Pi~iAPm~~~~~~~~~ge~ala~aa~~~G~~~~vs~~~~~s~e----e----i~~~--~~~~~~~QLy~~~ 167 (402)
+|.+.+++.|+++|||++.+ ++++++.|+++|..++.+++.+.... + .... .+.+..+||+ ..
T Consensus 2 ~i~~~~~~~~~~lAPM~g~t------d~~fR~l~~~~g~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~vQl~-g~ 74 (321)
T PRK10415 2 RIGQYQLRNRLIAAPMAGIT------DRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIA-GS 74 (321)
T ss_pred ccCCccCCCCEEecCCCCCC------cHHHHHHHHHHCCCEEEEccEEcchhhhcCHhHHHHhccCccCCCEEEEEe-CC
Confidence 35567788999999999886 89999999999999888887443211 1 1111 1256679997 77
Q ss_pred ChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCCcc
Q 015722 168 HRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLN 247 (402)
Q Consensus 168 d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 247 (402)
|++.+.+.++.+++.|++.|+||++||.. ++... +.+..+. .+|++.
T Consensus 75 ~~~~~~~aa~~~~~~g~d~IdlN~gCP~~---------------~v~~~----------------g~Gs~ll--~~p~~~ 121 (321)
T PRK10415 75 DPKEMADAARINVESGAQIIDINMGCPAK---------------KVNRK----------------LAGSALL--QYPDLV 121 (321)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCHH---------------HHcCC----------------CcccHHh--cCHHHH
Confidence 89998999999889999999999999962 11100 1122232 367778
Q ss_pred HHHHHHHHHccCccEEEEecc--------CHHHHHHHHHhCCcEEEEecCccc--CCCCCcchHHHHHHHHHHhcCCCeE
Q 015722 248 WKDVKWLQTITSLPILVKGVL--------TAEDASLAIQYGAAGIIVSNHGAR--QLDYVPATVMALEEVVQAAKGRVPV 317 (402)
Q Consensus 248 ~~~i~~lr~~~~~Pv~vK~~~--------~~~da~~a~~aGad~I~vsn~gg~--~~d~~~~~~~~l~~i~~~~~~~i~v 317 (402)
.+.++++++.+++||.+|... ..+-++.+.++|+|+|++ ||++ +...|++.++.+.++++.+ ++||
T Consensus 122 ~eiv~av~~a~d~pv~vKiR~G~~~~~~~~~~~a~~le~~G~d~i~v--h~rt~~~~~~G~a~~~~i~~ik~~~--~iPV 197 (321)
T PRK10415 122 KSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTI--HGRTRACLFNGEAEYDSIRAVKQKV--SIPV 197 (321)
T ss_pred HHHHHHHHHhcCCceEEEEEccccCCcchHHHHHHHHHHhCCCEEEE--ecCccccccCCCcChHHHHHHHHhc--CCcE
Confidence 888999999999999999852 124567889999999999 5543 3455778899999999987 7999
Q ss_pred EEecCCCCHHHHHHHHH-cCcCEEEEchH-----HHHhhh----cCC----hHHHHHHHHHHHHHHHHHHHHhCCC-Chh
Q 015722 318 FLDGGVRRGTDVFKALA-LGASGVFVGRP-----VPFSLA----VDG----EAGVRKVLQMLRDEFELTMALSGCR-SLK 382 (402)
Q Consensus 318 ia~GGI~~g~dv~kal~-lGAd~V~iGr~-----~l~~~~----~~G----~~gv~~~i~~l~~el~~~m~~~G~~-~i~ 382 (402)
|++|||.+.+|+.+++. .|||+||+||+ |++... ..| +....+.++.+.++++.+..+.|.. .+.
T Consensus 198 I~nGgI~s~~da~~~l~~~gadgVmiGR~~l~nP~if~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (321)
T PRK10415 198 IANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYR 277 (321)
T ss_pred EEeCCCCCHHHHHHHHhccCCCEEEEChHhhcCChHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHChHHHHH
Confidence 99999999999999998 79999999995 444321 112 2234577788889998888888764 567
Q ss_pred hhcccceec
Q 015722 383 EITRNHIVT 391 (402)
Q Consensus 383 el~~~~l~~ 391 (402)
++++..-+.
T Consensus 278 ~~rk~~~~y 286 (321)
T PRK10415 278 IARKHVSWY 286 (321)
T ss_pred HHHHHHHHH
Confidence 777765443
No 32
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=99.89 E-value=2.7e-21 Score=189.36 Aligned_cols=237 Identities=20% Similarity=0.231 Sum_probs=172.2
Q ss_pred ceeecCcccCCceeecccccccccCChhhHHHHHHHHHcCCeEEecC-CccC--------------------------CH
Q 015722 96 TTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSS-WATS--------------------------SV 148 (402)
Q Consensus 96 st~i~G~~l~~Pi~iAPm~~~~~~~~~ge~ala~aa~~~G~~~~vs~-~~~~--------------------------s~ 148 (402)
+|+++|++++.||++|+- ..+ ....+.+.+...|..+++.. .... .+
T Consensus 1 ~~~~~G~~~~nP~~~aag-~~~-----~~~~~~~~~~~g~~g~v~~~ti~~~~~~~~~~p~~~~~~~~~~n~~g~~~~g~ 74 (296)
T cd04740 1 SVELAGLRLKNPVILASG-TFG-----FGEELSRVADLGKLGAIVTKSITLEPREGNPPPRVVETPGGMLNAIGLQNPGV 74 (296)
T ss_pred CeEECCEEcCCCCEECCC-CCC-----CHHHHHHHHhcCCceEEEECCcCCCCCCCCCCCeEEecCcceeeecCCCCcCH
Confidence 578999999999999842 111 12345554544447666632 2111 11
Q ss_pred HH----Hhhc---CCCceEEEEeecCChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCcccccccccc
Q 015722 149 EE----VSST---GPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGL 221 (402)
Q Consensus 149 ee----i~~~---~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~ 221 (402)
++ +.+. ...+..+||. ..+.+...+.+++++++|+++|.||+.||....| .
T Consensus 75 ~~~~~~~~~~~~~~~~p~ivsi~-g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~--------------g------- 132 (296)
T cd04740 75 EAFLEELLPWLREFGTPVIASIA-GSTVEEFVEVAEKLADAGADAIELNISCPNVKGG--------------G------- 132 (296)
T ss_pred HHHHHHHHHHhhcCCCcEEEEEe-cCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCC--------------c-------
Confidence 22 2221 2357889997 5677888899999999999999999999963110 0
Q ss_pred ccccCCCCCchhhHHHhhhhcCCCccHHHHHHHHHccCccEEEEeccCH----HHHHHHHHhCCcEEEEecC-cccCCC-
Q 015722 222 YIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTA----EDASLAIQYGAAGIIVSNH-GARQLD- 295 (402)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~Pv~vK~~~~~----~da~~a~~aGad~I~vsn~-gg~~~d- 295 (402)
..+. .++.+..+.++++|+.+++||++|...+. +.++.+.++|+|+|+++|+ .|+..|
T Consensus 133 -------------~~~~---~~~~~~~eiv~~vr~~~~~Pv~vKl~~~~~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~ 196 (296)
T cd04740 133 -------------MAFG---TDPEAVAEIVKAVKKATDVPVIVKLTPNVTDIVEIARAAEEAGADGLTLINTLKGMAIDI 196 (296)
T ss_pred -------------cccc---CCHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHHHHcCCCEEEEECCCccccccc
Confidence 0011 24556678899999999999999986443 4477889999999999875 221111
Q ss_pred --------------CCc----chHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHHHhhhcCChHH
Q 015722 296 --------------YVP----ATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAG 357 (402)
Q Consensus 296 --------------~~~----~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~~~~~~G~~g 357 (402)
.|+ ..++.+.++++.+ ++|||++|||.+++|+.++|++|||+|++||++++. +
T Consensus 197 ~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~--~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~~-----p-- 267 (296)
T cd04740 197 ETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAV--EIPIIGVGGIASGEDALEFLMAGASAVQVGTANFVD-----P-- 267 (296)
T ss_pred ccCceeecCCcceecCcccchHHHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhcC-----h--
Confidence 122 1457788888777 799999999999999999999999999999999863 3
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCChhhhccc
Q 015722 358 VRKVLQMLRDEFELTMALSGCRSLKEITRN 387 (402)
Q Consensus 358 v~~~i~~l~~el~~~m~~~G~~~i~el~~~ 387 (402)
.+++.++++|+.+|+..|+++++|+++.
T Consensus 268 --~~~~~i~~~l~~~~~~~g~~~~~~~~g~ 295 (296)
T cd04740 268 --EAFKEIIEGLEAYLDEEGIKSIEELVGL 295 (296)
T ss_pred --HHHHHHHHHHHHHHHHcCCCCHHHHhCc
Confidence 4678999999999999999999999863
No 33
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.89 E-value=6.4e-21 Score=189.89 Aligned_cols=240 Identities=19% Similarity=0.186 Sum_probs=170.4
Q ss_pred ccceeecCcccCCceeecccccccccCChhhHHHHHHHHHcCCeEEec-CCc----------------------------
Q 015722 94 DMTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLS-SWA---------------------------- 144 (402)
Q Consensus 94 d~st~i~G~~l~~Pi~iAPm~~~~~~~~~ge~ala~aa~~~G~~~~vs-~~~---------------------------- 144 (402)
|++|+++|+++++||++|.-+.+. .....+.+.+.|...++. |..
T Consensus 2 ~l~~~~~Gl~l~nPv~~asg~~~~------~~~~~~~~~~~g~Gavv~kti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (334)
T PRK07565 2 DLSTTYLGLTLRNPLVASASPLSE------SVDNVKRLEDAGAGAVVLKSLFEEQIRHEAAELDRHLTHGTESFAEALDY 75 (334)
T ss_pred CceEEECCEecCCCCEecCcCCCC------CHHHHHHHHHCCCeEEEEeeCCHHHhhccccccccccccCCCcchhhhhh
Confidence 689999999999999987644432 223344477777665552 111
Q ss_pred -------cCCHHH----Hh---hcCCCceEEEEeecCChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCC
Q 015722 145 -------TSSVEE----VS---STGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLP 210 (402)
Q Consensus 145 -------~~s~ee----i~---~~~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p 210 (402)
+..+++ +. +..+.+...|+. ..+.+...+++++++++|+++|.+|+.||...
T Consensus 76 ~n~~gl~n~g~d~~~~~i~~~~~~~~~pvi~sI~-g~~~~e~~~~a~~~~~agad~ielN~scpp~~------------- 141 (334)
T PRK07565 76 FPEPAKFYVGPEEYLELIRRAKEAVDIPVIASLN-GSSAGGWVDYARQIEQAGADALELNIYYLPTD------------- 141 (334)
T ss_pred hhhhhccCcCHHHHHHHHHHHHHhcCCcEEEEec-cCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCC-------------
Confidence 011221 11 112357788986 45667777889999999999999999886310
Q ss_pred CccccccccccccccCCCCCchhhHHHhhhhcCCCccHHHHHHHHHccCccEEEEeccC----HHHHHHHHHhCCcEEEE
Q 015722 211 PHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLT----AEDASLAIQYGAAGIIV 286 (402)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~Pv~vK~~~~----~~da~~a~~aGad~I~v 286 (402)
... .+. ..+...++.++++++.+++||++|.... .+.++.+.++|+|+|++
T Consensus 142 --~~~----------------~g~-------~~~~~~~eil~~v~~~~~iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~~ 196 (334)
T PRK07565 142 --PDI----------------SGA-------EVEQRYLDILRAVKSAVSIPVAVKLSPYFSNLANMAKRLDAAGADGLVL 196 (334)
T ss_pred --CCC----------------ccc-------cHHHHHHHHHHHHHhccCCcEEEEeCCCchhHHHHHHHHHHcCCCeEEE
Confidence 000 000 0011246889999999999999997643 34577889999999999
Q ss_pred ecCccc-CC---------CCCcc-------hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHHHh
Q 015722 287 SNHGAR-QL---------DYVPA-------TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFS 349 (402)
Q Consensus 287 sn~gg~-~~---------d~~~~-------~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~~ 349 (402)
+|+... .. .++.+ .++.+.++++.+ ++|||++|||+|++|+.|+|.+||++|++||++++.
T Consensus 197 ~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~--~ipIig~GGI~s~~Da~e~l~aGA~~V~v~t~~~~~ 274 (334)
T PRK07565 197 FNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRV--GADLAATTGVHDAEDVIKMLLAGADVVMIASALLRH 274 (334)
T ss_pred ECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhc--CCCEEEECCCCCHHHHHHHHHcCCCceeeehHHhhh
Confidence 886321 11 12211 245566666655 799999999999999999999999999999999872
Q ss_pred hhcCChHHHHHHHHHHHHHHHHHHHHhCCCChhhhcccc
Q 015722 350 LAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNH 388 (402)
Q Consensus 350 ~~~~G~~gv~~~i~~l~~el~~~m~~~G~~~i~el~~~~ 388 (402)
|+ .+++.+.+||+.+|...|+++++|+++..
T Consensus 275 ----g~----~~~~~i~~~L~~~l~~~g~~~i~e~~g~~ 305 (334)
T PRK07565 275 ----GP----DYIGTILRGLEDWMERHGYESLQQFRGSM 305 (334)
T ss_pred ----Cc----HHHHHHHHHHHHHHHHcCCCCHHHHhccc
Confidence 44 47889999999999999999999999854
No 34
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=99.88 E-value=2.5e-21 Score=190.67 Aligned_cols=240 Identities=19% Similarity=0.185 Sum_probs=171.7
Q ss_pred CceeecccccccccCChhhHHHHHHHHHcC-CeEEecCCccC--------CHHHHhh------cC--CCceEEEEeecCC
Q 015722 106 MPIMIAPTAFQKMAHPEGECATARAASAAG-TIMTLSSWATS--------SVEEVSS------TG--PGIRFFQLYVTKH 168 (402)
Q Consensus 106 ~Pi~iAPm~~~~~~~~~ge~ala~aa~~~G-~~~~vs~~~~~--------s~eei~~------~~--~~~~~~QLy~~~d 168 (402)
||+++|||++.+ +.++++.|++.| ..+++++|.+. ....+.. .. +.|..+||+ ..|
T Consensus 1 ~~~~lAPMag~t------d~~fR~l~~~~g~~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~-g~~ 73 (312)
T PRK10550 1 MRVLLAPMEGVL------DSLVRELLTEVNDYDLCITEFLRVVDQLLPVKVFHRLCPELHNASRTPSGTLVRIQLL-GQY 73 (312)
T ss_pred CCeEEECCCCCc------CHHHHHHHHHhCCCCEEEeCCEEechhcccchhHHHHhHHhcccCCCCCCCcEEEEec-cCC
Confidence 689999999986 899999999999 78888888442 1111111 11 267899998 789
Q ss_pred hhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCCccH
Q 015722 169 RNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNW 248 (402)
Q Consensus 169 ~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 248 (402)
++.+.+.++++++.|++.|.||++||.. +++.. +.+..+. .+|.+..
T Consensus 74 p~~~~~aA~~~~~~g~d~IdiN~GCP~~---------------~v~~~----------------g~Gs~Ll--~~~~~~~ 120 (312)
T PRK10550 74 PQWLAENAARAVELGSWGVDLNCGCPSK---------------TVNGS----------------GGGATLL--KDPELIY 120 (312)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCch---------------HHhcC----------------CCchHhh--cCHHHHH
Confidence 9999999999999999999999999963 11100 1122233 3677788
Q ss_pred HHHHHHHHccC--ccEEEEeccC-------HHHHHHHHHhCCcEEEEecCccc--CCCCCcc-hHHHHHHHHHHhcCCCe
Q 015722 249 KDVKWLQTITS--LPILVKGVLT-------AEDASLAIQYGAAGIIVSNHGAR--QLDYVPA-TVMALEEVVQAAKGRVP 316 (402)
Q Consensus 249 ~~i~~lr~~~~--~Pv~vK~~~~-------~~da~~a~~aGad~I~vsn~gg~--~~d~~~~-~~~~l~~i~~~~~~~i~ 316 (402)
+.++.+++.++ +||.||.... .+-++.+.++|+|.|+| ||++ |.+.+++ .++.+.++++.+ ++|
T Consensus 121 eiv~avr~~~~~~~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~V--h~Rt~~~~y~g~~~~~~~i~~ik~~~--~iP 196 (312)
T PRK10550 121 QGAKAMREAVPAHLPVTVKVRLGWDSGERKFEIADAVQQAGATELVV--HGRTKEDGYRAEHINWQAIGEIRQRL--TIP 196 (312)
T ss_pred HHHHHHHHhcCCCcceEEEEECCCCCchHHHHHHHHHHhcCCCEEEE--CCCCCccCCCCCcccHHHHHHHHhhc--CCc
Confidence 89999999884 8999997521 24467889999999999 5554 3445554 789999999987 799
Q ss_pred EEEecCCCCHHHHHHHHH-cCcCEEEEch-----HHHHhhhcCCh--HHHHHHHHHHHHHHHHHHHHhCC-CChhhhccc
Q 015722 317 VFLDGGVRRGTDVFKALA-LGASGVFVGR-----PVPFSLAVDGE--AGVRKVLQMLRDEFELTMALSGC-RSLKEITRN 387 (402)
Q Consensus 317 via~GGI~~g~dv~kal~-lGAd~V~iGr-----~~l~~~~~~G~--~gv~~~i~~l~~el~~~m~~~G~-~~i~el~~~ 387 (402)
||++|||.|++|+.+++. .|||+||||| |+++.....|. ....+.++.+.++++......+. ..+.++++.
T Consensus 197 Vi~nGdI~t~~da~~~l~~~g~DgVmiGRg~l~nP~lf~~~~~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~rk~ 276 (312)
T PRK10550 197 VIANGEIWDWQSAQQCMAITGCDAVMIGRGALNIPNLSRVVKYNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQW 276 (312)
T ss_pred EEEeCCcCCHHHHHHHHhccCCCEEEEcHHhHhCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHhcCcchhHHHHHHHH
Confidence 999999999999999997 7899999999 45554332232 22345555566655433332221 235556655
Q ss_pred ce
Q 015722 388 HI 389 (402)
Q Consensus 388 ~l 389 (402)
..
T Consensus 277 ~~ 278 (312)
T PRK10550 277 LG 278 (312)
T ss_pred HH
Confidence 43
No 35
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=99.88 E-value=4.3e-21 Score=189.96 Aligned_cols=246 Identities=21% Similarity=0.228 Sum_probs=179.1
Q ss_pred cCcccCCceeecccccccccCChhhHHHHHHHHHcCCeEEecCCccC-CH-------HHHhhcCC--CceEEEEeecCCh
Q 015722 100 LGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATS-SV-------EEVSSTGP--GIRFFQLYVTKHR 169 (402)
Q Consensus 100 ~G~~l~~Pi~iAPm~~~~~~~~~ge~ala~aa~~~G~~~~vs~~~~~-s~-------eei~~~~~--~~~~~QLy~~~d~ 169 (402)
.|++++.|+++|||.+.+ +.++++.|+++|..++.+++.+. ++ .++....+ .|..+||. ..++
T Consensus 2 ~~~~~~~~l~lAPm~~~t------~~~fR~l~~~~g~~~~~temi~~~~l~~~~~~~~~~~~~~~~~~p~i~ql~-g~~~ 74 (319)
T TIGR00737 2 GNIQLKSRVVLAPMAGVT------DSPFRRLVAEYGAGLTVCEMVSSEAIVYDSQRTMRLLDIAEDETPISVQLF-GSDP 74 (319)
T ss_pred CCccCCCCEEecCCCCCC------cHHHHHHHHHHCCCEEEECCEEEhhhhcCCHHHHHHhhcCCccceEEEEEe-CCCH
Confidence 567889999999998876 88999999999988888877332 11 11222222 57889997 6789
Q ss_pred hHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCCccHH
Q 015722 170 NVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWK 249 (402)
Q Consensus 170 ~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 249 (402)
+.+.+.+++++++|+++|.||+.||.. +|.+ . +.+..+. .++.+..+
T Consensus 75 ~~~~~aa~~~~~~G~d~IelN~gcP~~-~~~~--------------~----------------~~Gs~l~--~~~~~~~e 121 (319)
T TIGR00737 75 DTMAEAAKINEELGADIIDINMGCPVP-KITK--------------K----------------GAGSALL--RDPDLIGK 121 (319)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCCHH-HhcC--------------C----------------CccchHh--CCHHHHHH
Confidence 999999999999999999999999842 1100 0 0111222 25667778
Q ss_pred HHHHHHHccCccEEEEecc--------CHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEec
Q 015722 250 DVKWLQTITSLPILVKGVL--------TAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDG 321 (402)
Q Consensus 250 ~i~~lr~~~~~Pv~vK~~~--------~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~G 321 (402)
.++++++.+++||.+|... ..+.++.+.++|+|+|++++.-..+...+++.++.+.++++.+ ++|||++|
T Consensus 122 i~~~vr~~~~~pv~vKir~g~~~~~~~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nG 199 (319)
T TIGR00737 122 IVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAV--RIPVIGNG 199 (319)
T ss_pred HHHHHHhhcCCCEEEEEEcccCCCcchHHHHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcC--CCcEEEeC
Confidence 9999999999999999742 2355788899999999994321112234567789999999887 69999999
Q ss_pred CCCCHHHHHHHHH-cCcCEEEEchHHHHh-----hh----cCCh----HHHHHHHHHHHHHHHHHHHHhCCC-Chhhhcc
Q 015722 322 GVRRGTDVFKALA-LGASGVFVGRPVPFS-----LA----VDGE----AGVRKVLQMLRDEFELTMALSGCR-SLKEITR 386 (402)
Q Consensus 322 GI~~g~dv~kal~-lGAd~V~iGr~~l~~-----~~----~~G~----~gv~~~i~~l~~el~~~m~~~G~~-~i~el~~ 386 (402)
||.+++|+.+++. .|||+||+||+++.. -. ..|+ ....+.++.+.++++...+..|.. .+..+++
T Consensus 200 gI~~~~da~~~l~~~gad~VmigR~~l~~P~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~r~ 279 (319)
T TIGR00737 200 DIFSPEDAKAMLETTGCDGVMIGRGALGNPWLFRQIEQYLTTGKYKPPPTFAEKLDAILRHLQLLADYYGESKGLRIARK 279 (319)
T ss_pred CCCCHHHHHHHHHhhCCCEEEEChhhhhCChHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 9999999999995 799999999976532 11 1121 234466777888888877777743 4555554
Q ss_pred c
Q 015722 387 N 387 (402)
Q Consensus 387 ~ 387 (402)
.
T Consensus 280 ~ 280 (319)
T TIGR00737 280 H 280 (319)
T ss_pred H
Confidence 4
No 36
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=99.88 E-value=7.3e-21 Score=191.23 Aligned_cols=251 Identities=19% Similarity=0.241 Sum_probs=177.7
Q ss_pred CCCCccceeecCcccCCceeecccccccccCChhhHHHHHHHHHcCCeEEec-CC---c----cC---------------
Q 015722 90 VSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLS-SW---A----TS--------------- 146 (402)
Q Consensus 90 ~~~~d~st~i~G~~l~~Pi~iAPm~~~~~~~~~ge~ala~aa~~~G~~~~vs-~~---~----~~--------------- 146 (402)
.+..|++|+|+|++++.||++|.-..+ ......+.+.++|...++. +. . +.
T Consensus 6 ~~~~dLst~~~Gl~l~NP~i~ASgp~t------~~~e~~~~~~~~g~GAVV~KTi~~~~~~~~n~~pr~~~~~~g~~~~~ 79 (385)
T PLN02495 6 ASEPDLSVTVNGLKMPNPFVIGSGPPG------TNYTVMKRAFDEGWGGVIAKTVSLDASKVINVTPRYARLRAGANGSA 79 (385)
T ss_pred cCCCcceEEECCEEcCCCcEeCCccCC------CCHHHHHHHHhcCCeEEEeccccCCccccCCCCCeEEecCccccccc
Confidence 355799999999999999999774332 2445556666668776662 11 0 00
Q ss_pred ----------------CHH----HHh---hcCC-CceEEEEeecCChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHH
Q 015722 147 ----------------SVE----EVS---STGP-GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREAD 202 (402)
Q Consensus 147 ----------------s~e----ei~---~~~~-~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d 202 (402)
.++ ++. +..+ .+.+..+....+.+...+++++++++|++++.+|+.||...
T Consensus 80 ~~n~iGl~N~~~~s~~g~~~~l~~i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~----- 154 (385)
T PLN02495 80 KGRVIGWQNIELISDRPFETMLAEFKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGM----- 154 (385)
T ss_pred ccccccccCcccccccCHHHHHHHHHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCC-----
Confidence 122 222 1223 36777775446788889999999999999999999999631
Q ss_pred HhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCCccHHHHHHHHHccCccEEEEeccCH----HHHHHHHH
Q 015722 203 IKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTA----EDASLAIQ 278 (402)
Q Consensus 203 ~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~Pv~vK~~~~~----~da~~a~~ 278 (402)
+ .+.. +..+. .+++...+.++++++.+++||++|+..+. +.++.+.+
T Consensus 155 -------~----~r~~----------------g~~~g--q~~e~~~~i~~~Vk~~~~iPv~vKLsPn~t~i~~ia~aa~~ 205 (385)
T PLN02495 155 -------P----ERKM----------------GAAVG--QDCDLLEEVCGWINAKATVPVWAKMTPNITDITQPARVALK 205 (385)
T ss_pred -------C----cCcc----------------chhhc--cCHHHHHHHHHHHHHhhcCceEEEeCCChhhHHHHHHHHHH
Confidence 0 0000 00111 24555667789999999999999998654 34678899
Q ss_pred hCCcEEEEecCcc--cCC----------------CCCcc-------hHHHHHHHHHHhc----CCCeEEEecCCCCHHHH
Q 015722 279 YGAAGIIVSNHGA--RQL----------------DYVPA-------TVMALEEVVQAAK----GRVPVFLDGGVRRGTDV 329 (402)
Q Consensus 279 aGad~I~vsn~gg--~~~----------------d~~~~-------~~~~l~~i~~~~~----~~i~via~GGI~~g~dv 329 (402)
+|+|+|++.|+-. ... .+|.+ ++..+.++++.+. .++|||+.|||.+++|+
T Consensus 206 ~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~alkpiAl~~v~~i~~~~~~~~~~~ipIiGvGGI~s~~Da 285 (385)
T PLN02495 206 SGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVRPIALAKVMAIAKMMKSEFPEDRSLSGIGGVETGGDA 285 (385)
T ss_pred hCCCEEEEecccCcccccccccCccccccCCCCCCCCccchhhhHHHHHHHHHHHHHHhhhccCCCcEEEECCCCCHHHH
Confidence 9999999998622 111 11111 2334555666552 25999999999999999
Q ss_pred HHHHHcCcCEEEEchHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHhCCCChhhhcccc
Q 015722 330 FKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNH 388 (402)
Q Consensus 330 ~kal~lGAd~V~iGr~~l~~~~~~G~~gv~~~i~~l~~el~~~m~~~G~~~i~el~~~~ 388 (402)
++.|.+||++|++|+.+++ .|+. +++.+.+||+.+|...|+++++|+++..
T Consensus 286 ~e~i~aGAs~VQv~Ta~~~----~Gp~----vi~~i~~~L~~~m~~~G~~si~e~~G~~ 336 (385)
T PLN02495 286 AEFILLGADTVQVCTGVMM----HGYP----LVKNLCAELQDFMKKHNFSSIEDFRGAS 336 (385)
T ss_pred HHHHHhCCCceeEeeeeee----cCcH----HHHHHHHHHHHHHHHcCCCCHHHHhCcC
Confidence 9999999999999999876 3553 6788999999999999999999998764
No 37
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=99.88 E-value=3.2e-21 Score=190.33 Aligned_cols=239 Identities=18% Similarity=0.203 Sum_probs=171.9
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCC-eEEecCCccC------CHHHHhhcCC--CceEEEEeecCChhHHHHHHH
Q 015722 107 PIMIAPTAFQKMAHPEGECATARAASAAGT-IMTLSSWATS------SVEEVSSTGP--GIRFFQLYVTKHRNVDAQLVK 177 (402)
Q Consensus 107 Pi~iAPm~~~~~~~~~ge~ala~aa~~~G~-~~~vs~~~~~------s~eei~~~~~--~~~~~QLy~~~d~~~~~~~l~ 177 (402)
|+++|||++.+ |.++++.|+++|. .++.++|.+. ...+.....+ .|..+||+ ..|++.+.+.++
T Consensus 2 ~~~lAPM~g~T------d~~fR~l~~~~g~~~~~~TEMv~a~~l~~~~~~~~l~~~~~e~p~~vQl~-g~~p~~~~~aA~ 74 (318)
T TIGR00742 2 RFSVAPMLDWT------DRHFRYFLRLLSKHTLLYTEMITAKAIIHGDKKDILKFSPEESPVALQLG-GSDPNDLAKCAK 74 (318)
T ss_pred CEEEECCCCCc------CHHHHHHHHHhCCCCEEEeCCEEEhhhhccCHHHHcccCCCCCcEEEEEc-cCCHHHHHHHHH
Confidence 78999999886 8999999999998 6888887432 1122222222 67899998 789999999999
Q ss_pred HHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCCccHHHHHHHHHc
Q 015722 178 RAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTI 257 (402)
Q Consensus 178 ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~ 257 (402)
.+++.|+++|+||++||.. ++... +.+..++ .+|++..+.++.+++.
T Consensus 75 ~~~~~g~d~IDlN~GCP~~---------------~v~~~----------------g~Gs~Ll--~~p~~~~~iv~av~~~ 121 (318)
T TIGR00742 75 IAEKRGYDEINLNVGCPSD---------------RVQNG----------------NFGACLM--GNADLVADCVKAMQEA 121 (318)
T ss_pred HHHhCCCCEEEEECCCCHH---------------HhCCC----------------CeehHhh--cCHHHHHHHHHHHHHH
Confidence 9999999999999999963 01000 1122333 3677778899999999
Q ss_pred cCccEEEEeccC------H----HHHHHHHHhCCcEEEEecCcccC---CC-------CCcchHHHHHHHHHHhcCCCeE
Q 015722 258 TSLPILVKGVLT------A----EDASLAIQYGAAGIIVSNHGARQ---LD-------YVPATVMALEEVVQAAKGRVPV 317 (402)
Q Consensus 258 ~~~Pv~vK~~~~------~----~da~~a~~aGad~I~vsn~gg~~---~d-------~~~~~~~~l~~i~~~~~~~i~v 317 (402)
+++||.||.... . +-++.+.++|+|.|+| ||++. .. .++..++.+.++++.+. ++||
T Consensus 122 ~~~PVsvKiR~g~~~~~~~~~~~~~~~~l~~~G~~~itv--HgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~-~ipV 198 (318)
T TIGR00742 122 VNIPVTVKHRIGIDPLDSYEFLCDFVEIVSGKGCQNFIV--HARKAWLSGLSPKENREIPPLRYERVYQLKKDFP-HLTI 198 (318)
T ss_pred hCCCeEEEEecCCCCcchHHHHHHHHHHHHHcCCCEEEE--eCCchhhcCCCccccccCCchhHHHHHHHHHhCC-CCcE
Confidence 999999998631 1 2367888999999999 66652 11 12336778888887663 6999
Q ss_pred EEecCCCCHHHHHHHHHcCcCEEEEch-----HHHHhhhc----CC---hHHHHHHHHHHHHHHHHHHHHhCCCChhhhc
Q 015722 318 FLDGGVRRGTDVFKALALGASGVFVGR-----PVPFSLAV----DG---EAGVRKVLQMLRDEFELTMALSGCRSLKEIT 385 (402)
Q Consensus 318 ia~GGI~~g~dv~kal~lGAd~V~iGr-----~~l~~~~~----~G---~~gv~~~i~~l~~el~~~m~~~G~~~i~el~ 385 (402)
|++|||+|.+|+.+++. |||+||||| ||+|.... .| .....+.++.+.++++..... ...+.+++
T Consensus 199 i~NGdI~s~~da~~~l~-g~dgVMigRgal~nP~if~~~~~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~--~~~~~~~r 275 (318)
T TIGR00742 199 EINGGIKNSEQIKQHLS-HVDGVMVGREAYENPYLLANVDREIFNETDEILTRKEIVEQMLPYIEEYLSQ--GLSLNHIT 275 (318)
T ss_pred EEECCcCCHHHHHHHHh-CCCEEEECHHHHhCCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHc--cchHHHHH
Confidence 99999999999999996 999999999 45554221 12 123345666677777765443 24567777
Q ss_pred ccceec
Q 015722 386 RNHIVT 391 (402)
Q Consensus 386 ~~~l~~ 391 (402)
+...+.
T Consensus 276 k~~~~y 281 (318)
T TIGR00742 276 RHLLGL 281 (318)
T ss_pred HHHHHH
Confidence 665444
No 38
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.86 E-value=5.2e-20 Score=191.58 Aligned_cols=144 Identities=26% Similarity=0.349 Sum_probs=119.5
Q ss_pred CCCccHHHHHHHHHcc-CccEEEEeccCHHHHHHHHHhCCcEEEEecCccc------CCCCCcchHHHHHHHHHHhc-CC
Q 015722 243 DRSLNWKDVKWLQTIT-SLPILVKGVLTAEDASLAIQYGAAGIIVSNHGAR------QLDYVPATVMALEEVVQAAK-GR 314 (402)
Q Consensus 243 d~~~~~~~i~~lr~~~-~~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~------~~d~~~~~~~~l~~i~~~~~-~~ 314 (402)
+....|+.|+++|+.+ ++||+++.+.|.++++.+.++|||+|.++.+.|. ..+.|.|.+..+.++.+.+. .+
T Consensus 265 ~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~ 344 (495)
T PTZ00314 265 NSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARERG 344 (495)
T ss_pred CchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHcCCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhcC
Confidence 4445688999999997 6899999999999999999999999999754331 23567888889888887664 37
Q ss_pred CeEEEecCCCCHHHHHHHHHcCcCEEEEchHHHH--------------------hhhc------C---------------
Q 015722 315 VPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF--------------------SLAV------D--------------- 353 (402)
Q Consensus 315 i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~--------------------~~~~------~--------------- 353 (402)
+|||++|||+++.|++||+++||++||+|+.|.- +++. .
T Consensus 345 v~vIadGGi~~~~di~kAla~GA~~Vm~G~~~a~~~e~~~~~~~~~g~~~k~yrGm~s~~a~~~~~~~~~y~~~~~~~~~ 424 (495)
T PTZ00314 345 VPCIADGGIKNSGDICKALALGADCVMLGSLLAGTEEAPGEYFFKDGVRLKVYRGMGSLEAMLSKESGERYLDENETIKV 424 (495)
T ss_pred CeEEecCCCCCHHHHHHHHHcCCCEEEECchhccccccCCceeeeCCeEEEEEeccchHHHhhccccccccccccccccc
Confidence 9999999999999999999999999999998742 1110 0
Q ss_pred --Ch-------HHHHHHHHHHHHHHHHHHHHhCCCChhhhcc
Q 015722 354 --GE-------AGVRKVLQMLRDEFELTMALSGCRSLKEITR 386 (402)
Q Consensus 354 --G~-------~gv~~~i~~l~~el~~~m~~~G~~~i~el~~ 386 (402)
|. ..+.+++..+..+|+..|.++|+.+|.||+.
T Consensus 425 ~egv~~~v~~~g~~~~~~~~~~~gl~~~~~y~g~~~i~~~~~ 466 (495)
T PTZ00314 425 AQGVSGSVVDKGSVAKLIPYLVKGVKHGMQYIGAHSIPELHE 466 (495)
T ss_pred CCceEEeeecCCcHHHHHHHHHHHHHHHHHhhCCCcHHHHHh
Confidence 10 1288999999999999999999999999987
No 39
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.86 E-value=1.3e-20 Score=195.90 Aligned_cols=142 Identities=23% Similarity=0.303 Sum_probs=119.2
Q ss_pred ccHHHHHHHHHccCccEEEEe--ccCHHHHHHHHHhCCcEEEEecCcc-----c-CCCCCcchHHHHHHHHHHh------
Q 015722 246 LNWKDVKWLQTITSLPILVKG--VLTAEDASLAIQYGAAGIIVSNHGA-----R-QLDYVPATVMALEEVVQAA------ 311 (402)
Q Consensus 246 ~~~~~i~~lr~~~~~Pv~vK~--~~~~~da~~a~~aGad~I~vsn~gg-----~-~~d~~~~~~~~l~~i~~~~------ 311 (402)
...+.|+++|+.++.++.|+. +.+.++++.+.++|||+|.|++||| | +.+.|++.+.++.++++++
T Consensus 269 ~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~aGAd~I~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~ 348 (502)
T PRK07107 269 WQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEAGADFVKVGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEE 348 (502)
T ss_pred HHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHHcCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhh
Confidence 346789999999875555554 8999999999999999999999999 5 6778999999999998876
Q ss_pred -cCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHH--------------------Hhhhc------------------
Q 015722 312 -KGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVP--------------------FSLAV------------------ 352 (402)
Q Consensus 312 -~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l--------------------~~~~~------------------ 352 (402)
+.++|||+||||+++.|++|||++|||+||+|++|- ++++.
T Consensus 349 ~g~~~~viadgGir~~gdi~KAla~GA~~vm~G~~~ag~~espg~~~~~~g~~~k~yrgm~s~~a~~~~ry~~~~~~~~~ 428 (502)
T PRK07107 349 TGVYIPICSDGGIVYDYHMTLALAMGADFIMLGRYFARFDESPTNKVNINGNYMKEYWGEGSNRARNWQRYDLGGDKKLS 428 (502)
T ss_pred cCCcceEEEcCCCCchhHHHHHHHcCCCeeeeChhhhccccCCCcEEEECCEEEEEeecccCHhhhhccccccccccccc
Confidence 224999999999999999999999999999999883 12111
Q ss_pred --CChH-------HHHHHHHHHHHHHHHHHHHhCCCChhhhccc
Q 015722 353 --DGEA-------GVRKVLQMLRDEFELTMALSGCRSLKEITRN 387 (402)
Q Consensus 353 --~G~~-------gv~~~i~~l~~el~~~m~~~G~~~i~el~~~ 387 (402)
.|.+ .+.+++..+..+|+..|.++|..+|.||+..
T Consensus 429 ~~egv~~~v~~~g~~~~~~~~~~~glrs~~~y~g~~~i~~l~~~ 472 (502)
T PRK07107 429 FEEGVDSYVPYAGSLKDNVAITLSKVRSTMCNCGALSIPELQQK 472 (502)
T ss_pred cCCccEEEecCCCCHHHHHHHHHHHHHHhhhccCCCcHHHHHhC
Confidence 0111 2888999999999999999999999999865
No 40
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=99.86 E-value=2.4e-20 Score=183.03 Aligned_cols=215 Identities=23% Similarity=0.238 Sum_probs=152.9
Q ss_pred ccceeecCcccCCceeecccccccccCChhhHHHHHHHHHcCCeEEec-CCccC--------------------------
Q 015722 94 DMTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLS-SWATS-------------------------- 146 (402)
Q Consensus 94 d~st~i~G~~l~~Pi~iAPm~~~~~~~~~ge~ala~aa~~~G~~~~vs-~~~~~-------------------------- 146 (402)
|++|+++|+++++||++|+-.... +....+.+..+|...++. +....
T Consensus 1 ~l~~~~~Gl~l~nPi~~aag~~~~------~~~~~~~~~~~G~Gavv~kti~~~~~~~gn~~pr~~~~~~~~~n~~g~~n 74 (299)
T cd02940 1 DLSVTFCGIKFPNPFGLASAPPTT------SYPMIRRAFEAGWGGAVTKTLGLDKDIVTNVSPRIARLRTSGRGQIGFNN 74 (299)
T ss_pred CCceEECCEEcCCCCEeCCcCCCC------CHHHHHHHHHhCCCEEEeccccCcCCCCCCCCCeEEEeCCCchhcccccC
Confidence 689999999999999999832221 334445555557655442 11100
Q ss_pred -------CHHH----Hh---hcCC-CceEEEEeecCChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCC
Q 015722 147 -------SVEE----VS---STGP-GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPP 211 (402)
Q Consensus 147 -------s~ee----i~---~~~~-~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~ 211 (402)
.++. +. +..+ .+...|++...+.+...+.++++++.|+++|.+|+.||..-
T Consensus 75 ~e~~s~~~~~~~~~~~~~~~~~~~~~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~-------------- 140 (299)
T cd02940 75 IELISEKPLEYWLKEIRELKKDFPDKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGM-------------- 140 (299)
T ss_pred CccccccCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCC--------------
Confidence 0111 11 1122 56789997433888888999999989999999999999631
Q ss_pred ccccccccccccccCCCCCchhhHHHhhhhcCCCccHHHHHHHHHccCccEEEEeccCH----HHHHHHHHhCCcEEEEe
Q 015722 212 HLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTA----EDASLAIQYGAAGIIVS 287 (402)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~Pv~vK~~~~~----~da~~a~~aGad~I~vs 287 (402)
..+. .+..+. .+++...+.++++++.+++||+||+.... +.++.+.++|+|+|+++
T Consensus 141 --~~~~----------------~G~~l~--~~~~~~~~iv~~v~~~~~~Pv~vKl~~~~~~~~~~a~~~~~~Gadgi~~~ 200 (299)
T cd02940 141 --PERG----------------MGAAVG--QDPELVEEICRWVREAVKIPVIAKLTPNITDIREIARAAKEGGADGVSAI 200 (299)
T ss_pred --CCCC----------------Cchhhc--cCHHHHHHHHHHHHHhcCCCeEEECCCCchhHHHHHHHHHHcCCCEEEEe
Confidence 0000 011111 25556678899999999999999987543 56788999999999998
Q ss_pred cCccc---------------------CCCCCcc----hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEE
Q 015722 288 NHGAR---------------------QLDYVPA----TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFV 342 (402)
Q Consensus 288 n~gg~---------------------~~d~~~~----~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~i 342 (402)
|+... +...|++ +++.+.++++.+.+++|||++|||++++|+.++|.+|||+|||
T Consensus 201 Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~i 280 (299)
T cd02940 201 NTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQV 280 (299)
T ss_pred cccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChheE
Confidence 75311 1112333 4788999998886679999999999999999999999999999
Q ss_pred chHHHH
Q 015722 343 GRPVPF 348 (402)
Q Consensus 343 Gr~~l~ 348 (402)
||.+++
T Consensus 281 ~ta~~~ 286 (299)
T cd02940 281 CTAVMN 286 (299)
T ss_pred ceeecc
Confidence 999876
No 41
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=99.86 E-value=5.4e-20 Score=179.23 Aligned_cols=177 Identities=24% Similarity=0.343 Sum_probs=138.7
Q ss_pred CChhHHHHHHHHHHHcC-CcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCC
Q 015722 167 KHRNVDAQLVKRAERAG-FKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRS 245 (402)
Q Consensus 167 ~d~~~~~~~l~ra~~~G-~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 245 (402)
...+...+.++..++++ ++++.+|+.||.. |. .+ .+. .+++
T Consensus 106 ~~~~~~~d~~~~~~~~~~ad~ielNiScPnt-------------~g---~~--------------------~l~--~~~e 147 (310)
T COG0167 106 PSEEAWADYARLLEEAGDADAIELNISCPNT-------------PG---GR--------------------ALG--QDPE 147 (310)
T ss_pred CcHHHHHHHHHHHHhcCCCCEEEEEccCCCC-------------CC---hh--------------------hhc--cCHH
Confidence 34566677888888888 8999999998852 11 00 010 1455
Q ss_pred ccHHHHHHHHHccCccEEEEeccCHHH----HHHHHHhCCcEEEEecCcc-cC-C------------CCC---c----ch
Q 015722 246 LNWKDVKWLQTITSLPILVKGVLTAED----ASLAIQYGAAGIIVSNHGA-RQ-L------------DYV---P----AT 300 (402)
Q Consensus 246 ~~~~~i~~lr~~~~~Pv~vK~~~~~~d----a~~a~~aGad~I~vsn~gg-~~-~------------d~~---~----~~ 300 (402)
...+.++++++.+++||++|+..+.++ |+.+.++|+|+|++.|+-. +. . .+| + -+
T Consensus 148 ~l~~l~~~vk~~~~~Pv~vKl~P~~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~a 227 (310)
T COG0167 148 LLEKLLEAVKAATKVPVFVKLAPNITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIA 227 (310)
T ss_pred HHHHHHHHHHhcccCceEEEeCCCHHHHHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcCcccchHHH
Confidence 555778999999999999999876543 7889999999999999522 11 0 122 2 25
Q ss_pred HHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHhCCCC
Q 015722 301 VMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRS 380 (402)
Q Consensus 301 ~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~~~~~~G~~gv~~~i~~l~~el~~~m~~~G~~~ 380 (402)
+..++++++.++.++|||+.|||.|++|+++.+++||++|+|||++++. |+ .+++.+.++|..+|...|++|
T Consensus 228 l~~v~~l~~~~~~~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Tal~~~----Gp----~i~~~I~~~l~~~l~~~g~~s 299 (310)
T COG0167 228 LRVVAELYKRLGGDIPIIGVGGIETGEDALEFILAGASAVQVGTALIYK----GP----GIVKEIIKGLARWLEEKGFES 299 (310)
T ss_pred HHHHHHHHHhcCCCCcEEEecCcCcHHHHHHHHHcCCchheeeeeeeee----Cc----hHHHHHHHHHHHHHHHcCCCC
Confidence 6788888888877899999999999999999999999999999999873 55 368899999999999999999
Q ss_pred hhhhcccce
Q 015722 381 LKEITRNHI 389 (402)
Q Consensus 381 i~el~~~~l 389 (402)
++|+++...
T Consensus 300 i~d~iG~~~ 308 (310)
T COG0167 300 IQDIIGSAL 308 (310)
T ss_pred HHHHhchhc
Confidence 999988654
No 42
>PLN02826 dihydroorotate dehydrogenase
Probab=99.86 E-value=2.9e-19 Score=181.33 Aligned_cols=122 Identities=28% Similarity=0.462 Sum_probs=100.5
Q ss_pred cCccEEEEec--cCHHH----HHHHHHhCCcEEEEecCc-cc----------CCCCC---cc----hHHHHHHHHHHhcC
Q 015722 258 TSLPILVKGV--LTAED----ASLAIQYGAAGIIVSNHG-AR----------QLDYV---PA----TVMALEEVVQAAKG 313 (402)
Q Consensus 258 ~~~Pv~vK~~--~~~~d----a~~a~~aGad~I~vsn~g-g~----------~~d~~---~~----~~~~l~~i~~~~~~ 313 (402)
.++||++|+. .+.++ ++.+.++|+|+|+++|+- ++ +..+| ++ +++.+.++++.+.+
T Consensus 261 ~~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~ 340 (409)
T PLN02826 261 GPPPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRG 340 (409)
T ss_pred cCCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCC
Confidence 4689999996 44444 788999999999999851 11 11222 22 56788899888877
Q ss_pred CCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHhCCCChhhhccc
Q 015722 314 RVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRN 387 (402)
Q Consensus 314 ~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~~~~~~G~~gv~~~i~~l~~el~~~m~~~G~~~i~el~~~ 387 (402)
++|||++|||.+++|+++++.+||++|++||++++. |+ .++..+++||..+|...|+++++|+.+.
T Consensus 341 ~ipIIgvGGI~sg~Da~e~i~AGAs~VQv~Ta~~~~----Gp----~~i~~I~~eL~~~l~~~G~~si~e~iG~ 406 (409)
T PLN02826 341 KIPLVGCGGVSSGEDAYKKIRAGASLVQLYTAFAYE----GP----ALIPRIKAELAACLERDGFKSIQEAVGA 406 (409)
T ss_pred CCcEEEECCCCCHHHHHHHHHhCCCeeeecHHHHhc----CH----HHHHHHHHHHHHHHHHcCCCCHHHHhCc
Confidence 899999999999999999999999999999999873 54 3678899999999999999999999874
No 43
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=99.85 E-value=1.4e-19 Score=185.52 Aligned_cols=249 Identities=20% Similarity=0.208 Sum_probs=174.6
Q ss_pred CccceeecCcccCCceeecccccccccCChhhHHHHHHHHHcCCeEEec-CC----ccC---------------------
Q 015722 93 IDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLS-SW----ATS--------------------- 146 (402)
Q Consensus 93 ~d~st~i~G~~l~~Pi~iAPm~~~~~~~~~ge~ala~aa~~~G~~~~vs-~~----~~~--------------------- 146 (402)
.|++|+++|++++.||++|.-... .. ...+.+.. ++|..+++. |. .+.
T Consensus 2 ~~L~~~~~Gl~l~nPv~~aag~~~---~~--~~~~~~~~-~~g~Gavv~kti~~~~gn~~~pr~~~~~~~~~~~~g~~n~ 75 (420)
T PRK08318 2 ADLSITFCGIKSPNPFWLASAPPT---NK--YYNVARAF-EAGWGGVVWKTLGPPIVNVSSPRFGALVKEDRRFIGFNNI 75 (420)
T ss_pred CCceEEECCEecCCCcEeCCcCCC---CC--HHHHHHHH-HhCCCEEEEeecCCCCCCCCCCeEEEecCCCcccccccCc
Confidence 478999999999999999863221 11 22333333 356554331 11 000
Q ss_pred ------CHHH----H---hhcCC-CceEEEEeecCChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCc
Q 015722 147 ------SVEE----V---SSTGP-GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPH 212 (402)
Q Consensus 147 ------s~ee----i---~~~~~-~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~ 212 (402)
.++. + .+..+ .+..+||....+.+...+.++.+++.|+++|.+|+.||..-
T Consensus 76 ~~~s~~~~~~~~~~~~~~~~~~~~~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~--------------- 140 (420)
T PRK08318 76 ELITDRPLEVNLREIRRVKRDYPDRALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHGM--------------- 140 (420)
T ss_pred ccccccCHHHHHHHHHHHHhhCCCceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCc---------------
Confidence 1121 1 11222 45789997443778888999999999999999999999620
Q ss_pred cccccccccccccCCCCCchhhHHHhhhhcCCCccHHHHHHHHHccCccEEEEeccCH----HHHHHHHHhCCcEEEEec
Q 015722 213 LTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTA----EDASLAIQYGAAGIIVSN 288 (402)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~Pv~vK~~~~~----~da~~a~~aGad~I~vsn 288 (402)
..+. .+..+. .+++...+.++++++.+++||+||+..+. +.++.+.++|+|+|++.|
T Consensus 141 -~~~~----------------~g~~~~--~~~~~~~~i~~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~~Gadgi~~~N 201 (420)
T PRK08318 141 -SERG----------------MGSAVG--QVPELVEMYTRWVKRGSRLPVIVKLTPNITDIREPARAAKRGGADAVSLIN 201 (420)
T ss_pred -cccC----------------Cccccc--CCHHHHHHHHHHHHhccCCcEEEEcCCCcccHHHHHHHHHHCCCCEEEEec
Confidence 0000 000111 25556678899999999999999997542 457889999999999876
Q ss_pred C-cc-----------------c---CCCCCcc----hHHHHHHHHHHhc-CCCeEEEecCCCCHHHHHHHHHcCcCEEEE
Q 015722 289 H-GA-----------------R---QLDYVPA----TVMALEEVVQAAK-GRVPVFLDGGVRRGTDVFKALALGASGVFV 342 (402)
Q Consensus 289 ~-gg-----------------~---~~d~~~~----~~~~l~~i~~~~~-~~i~via~GGI~~g~dv~kal~lGAd~V~i 342 (402)
+ .+ + +...|++ +++.+.++++.+. .++|||++|||.+++|++++|.+||++|||
T Consensus 202 t~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqi 281 (420)
T PRK08318 202 TINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQV 281 (420)
T ss_pred ccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhCCChhee
Confidence 5 11 1 0112444 4788888887763 379999999999999999999999999999
Q ss_pred chHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHhCCCChhhhcccce
Q 015722 343 GRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHI 389 (402)
Q Consensus 343 Gr~~l~~~~~~G~~gv~~~i~~l~~el~~~m~~~G~~~i~el~~~~l 389 (402)
||.+++ .|+ .++..+.++|+.+|...|+.++.|+.+..+
T Consensus 282 ~ta~~~----~gp----~ii~~I~~~L~~~l~~~g~~si~e~iG~~~ 320 (420)
T PRK08318 282 CTAAMQ----YGF----RIVEDMISGLSHYMDEKGFASLEDMVGLAV 320 (420)
T ss_pred eeeecc----CCc----hhHHHHHHHHHHHHHHcCcchHHHHhcccc
Confidence 999886 244 367889999999999999999999986533
No 44
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.85 E-value=9.8e-20 Score=189.77 Aligned_cols=141 Identities=26% Similarity=0.384 Sum_probs=118.1
Q ss_pred cHHHHHHHHHcc-CccEEEEeccCHHHHHHHHHhCCcEEEEe-----cCcccCC-CCCcchHHHHHHHHHHhc-CCCeEE
Q 015722 247 NWKDVKWLQTIT-SLPILVKGVLTAEDASLAIQYGAAGIIVS-----NHGARQL-DYVPATVMALEEVVQAAK-GRVPVF 318 (402)
Q Consensus 247 ~~~~i~~lr~~~-~~Pv~vK~~~~~~da~~a~~aGad~I~vs-----n~gg~~~-d~~~~~~~~l~~i~~~~~-~~i~vi 318 (402)
.++.++++++.+ +.||+++.+.+.++++.+.++|+|+|.++ +|++++. .+|.|+++++.++++.+. .++|||
T Consensus 256 vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~aGad~i~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~vi 335 (486)
T PRK05567 256 VLDRVREIKAKYPDVQIIAGNVATAEAARALIEAGADAVKVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVI 335 (486)
T ss_pred HHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHcCCCEEEECCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEE
Confidence 457799999998 89999999999999999999999999984 3444544 458899999999988763 379999
Q ss_pred EecCCCCHHHHHHHHHcCcCEEEEchHHHH--------------------hhhc------------------------CC
Q 015722 319 LDGGVRRGTDVFKALALGASGVFVGRPVPF--------------------SLAV------------------------DG 354 (402)
Q Consensus 319 a~GGI~~g~dv~kal~lGAd~V~iGr~~l~--------------------~~~~------------------------~G 354 (402)
++|||+++.|++|||++||++||+|++|-- +++. .|
T Consensus 336 adGGi~~~~di~kAla~GA~~v~~G~~~a~~~e~pg~~~~~~g~~~k~y~gm~s~~a~~~~~~~r~~~~~~~~~~~~~~g 415 (486)
T PRK05567 336 ADGGIRYSGDIAKALAAGASAVMLGSMLAGTEEAPGEVELYQGRSYKSYRGMGSLGAMSKGSSDRYFQSVNAADKLVPEG 415 (486)
T ss_pred EcCCCCCHHHHHHHHHhCCCEEEECccccccccCCCceEEECCEEEEEEeccchHHHHhcccccccccccccccccCCCc
Confidence 999999999999999999999999997731 1111 01
Q ss_pred h-------HHHHHHHHHHHHHHHHHHHHhCCCChhhhccc
Q 015722 355 E-------AGVRKVLQMLRDEFELTMALSGCRSLKEITRN 387 (402)
Q Consensus 355 ~-------~gv~~~i~~l~~el~~~m~~~G~~~i~el~~~ 387 (402)
. ..+.+++..+...|+..|.++|..+|.||+..
T Consensus 416 ~~~~~~~~g~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~ 455 (486)
T PRK05567 416 IEGRVPYKGPLSEIIHQLMGGLRSGMGYTGAATIEELREK 455 (486)
T ss_pred eEEeCCCCCCHHHHHHHHHHHHHHHHHhcCcCcHHHHHhc
Confidence 0 12889999999999999999999999999854
No 45
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.84 E-value=1.3e-19 Score=188.72 Aligned_cols=143 Identities=24% Similarity=0.302 Sum_probs=115.7
Q ss_pred CCCccHHHHHHHHHccC-ccEEEEeccCHHHHHHHHHhCCcEEEEecCccc----CCCC--Cc---chHHHHHHHHHHhc
Q 015722 243 DRSLNWKDVKWLQTITS-LPILVKGVLTAEDASLAIQYGAAGIIVSNHGAR----QLDY--VP---ATVMALEEVVQAAK 312 (402)
Q Consensus 243 d~~~~~~~i~~lr~~~~-~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~----~~d~--~~---~~~~~l~~i~~~~~ 312 (402)
+....|+.++++|+.++ .+|+++.+.|.++|+.|.++|||+|+|++|+|. +... |. +++..++++++..
T Consensus 272 ~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~- 350 (505)
T PLN02274 272 DSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQH- 350 (505)
T ss_pred CcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHhc-
Confidence 33456899999999984 888889999999999999999999999988663 3221 22 3455677776654
Q ss_pred CCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHHHh--------------------hhc--------------------
Q 015722 313 GRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFS--------------------LAV-------------------- 352 (402)
Q Consensus 313 ~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~~--------------------~~~-------------------- 352 (402)
++|||++|||+++.|+.|||++||++||+|+.|... ++.
T Consensus 351 -~vpVIadGGI~~~~di~kAla~GA~~V~vGs~~~~t~Esp~~~~~~~g~~~k~yrgmgs~~a~~~~~~~ry~~~~~~~~ 429 (505)
T PLN02274 351 -GVPVIADGGISNSGHIVKALTLGASTVMMGSFLAGTTEAPGEYFYQDGVRVKKYRGMGSLEAMTKGSDQRYLGDTAKLK 429 (505)
T ss_pred -CCeEEEeCCCCCHHHHHHHHHcCCCEEEEchhhcccccCCcceeeeCCeEEEEEeccchHHHHhccccccccccCcccc
Confidence 799999999999999999999999999999987421 110
Q ss_pred --CChH-------HHHHHHHHHHHHHHHHHHHhCCCChhhhccc
Q 015722 353 --DGEA-------GVRKVLQMLRDEFELTMALSGCRSLKEITRN 387 (402)
Q Consensus 353 --~G~~-------gv~~~i~~l~~el~~~m~~~G~~~i~el~~~ 387 (402)
.|.+ .|.+++..|..+|+..|.++|+.+|.||+..
T Consensus 430 v~egv~~~v~~~g~~~~~~~~~~~g~~~~~~y~g~~~~~~~~~~ 473 (505)
T PLN02274 430 IAQGVSGAVADKGSVLKFVPYTMQAVKQGFQDLGASSLQSAHEL 473 (505)
T ss_pred cCCceEEecccCCCHHHHHHHHHHHHHHhhhhcCcchHHHHHhh
Confidence 0111 2889999999999999999999999999866
No 46
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.84 E-value=2e-19 Score=185.65 Aligned_cols=302 Identities=23% Similarity=0.325 Sum_probs=191.6
Q ss_pred hhhccccccccc-CCCCCCccceeec-CcccCCceeecccccccccCChhhHHHHHHHHHcCCeEEecCCccCCHHHHhh
Q 015722 76 AFSRILFRPRIL-RDVSKIDMTTTVL-GFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSS 153 (402)
Q Consensus 76 ~~~~~~l~pr~l-~~~~~~d~st~i~-G~~l~~Pi~iAPm~~~~~~~~~ge~ala~aa~~~G~~~~vs~~~~~s~eei~~ 153 (402)
.|||+.|+|... ...+++|++|.+- +.+++.|++.|||...+ |-.++.+.++.|...++.. ++++++.++
T Consensus 3 t~ddv~l~p~~~~~~~~~~~~~~~~~~~~~l~~p~~s~~mdtvT------e~ema~~ma~~gg~GvI~~--n~~~e~q~~ 74 (450)
T TIGR01302 3 TFDDVLLLPGFIDVEPDDVDLSTRITRNIKLNIPILSSPMDTVT------ESRMAIAMAREGGIGVIHR--NMSIEEQAE 74 (450)
T ss_pred CccceEecccccccCccccccccccccccCcCCCeeecCCCccC------HHHHHHHHHhcCCCceeec--CCCHHHHHH
Confidence 599999999865 3446899999987 78999999999997654 6677777888877777753 455654322
Q ss_pred ----cCC--CceEEEEeecCChhHHHHHHHHHHHcCCcEEEEecCCC----CCC-chhHHHh-------------h--hc
Q 015722 154 ----TGP--GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTP----RLG-RREADIK-------------N--RF 207 (402)
Q Consensus 154 ----~~~--~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p----~~g-~r~~d~r-------------~--~~ 207 (402)
... ....-++..........++++...+.++..+.|.-+.. ..| -..+|+. . ..
T Consensus 75 ~V~~Vk~~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~~~~~~V~dvm~~~~~ 154 (450)
T TIGR01302 75 QVKRVKRAENGIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVKDKGKPVSEVMTREEV 154 (450)
T ss_pred HHhhhccccCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhhcCCCCHHHhhCCCCC
Confidence 111 11111111111223345566666677777776643321 000 0111111 0 00
Q ss_pred -CCCCccccccc---------------------------cc----cccccC---CCC------C-------chhhHHHhh
Q 015722 208 -VLPPHLTLKNY---------------------------EG----LYIGKM---DKT------D-------DSGLASYVA 239 (402)
Q Consensus 208 -~~p~~~~~~~~---------------------------~~----~~~~~~---~~~------~-------~~~~~~~~~ 239 (402)
.++.......+ .+ +..... ... . .......+.
T Consensus 155 ~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~~~~~~~~d~~g~l~V~aav~~~~~~~~r~~~L~~ 234 (450)
T TIGR01302 155 ITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRRKFPHASKDENGRLIVGAAVGTREFDKERAEALVK 234 (450)
T ss_pred EEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhcccCCcceEeCCCCEEEEEEecCchhHHHHHHHHHH
Confidence 00000000000 00 000000 000 0 000011111
Q ss_pred h----------hcCCCccHHHHHHHHHcc-CccEEEEeccCHHHHHHHHHhCCcEEEEecCccc-----C-CCCCcchHH
Q 015722 240 N----------QIDRSLNWKDVKWLQTIT-SLPILVKGVLTAEDASLAIQYGAAGIIVSNHGAR-----Q-LDYVPATVM 302 (402)
Q Consensus 240 ~----------~~d~~~~~~~i~~lr~~~-~~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~-----~-~d~~~~~~~ 302 (402)
. +.+....++.|+++|+.+ ++||+++.+.|.++++.+.++|||+|.|+.+.|. . ..+|.+.+.
T Consensus 235 aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aGad~i~vg~g~G~~~~t~~~~~~g~p~~~ 314 (450)
T TIGR01302 235 AGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDAGADGLRVGIGPGSICTTRIVAGVGVPQIT 314 (450)
T ss_pred hCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHhCCCEEEECCCCCcCCccceecCCCccHHH
Confidence 0 112334567899999985 7999999999999999999999999999866542 1 246888899
Q ss_pred HHHHHHHHhc-CCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHH--------------------Hhhhc---------
Q 015722 303 ALEEVVQAAK-GRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVP--------------------FSLAV--------- 352 (402)
Q Consensus 303 ~l~~i~~~~~-~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l--------------------~~~~~--------- 352 (402)
++.++++.+. .++|||++|||+++.|++|||++||++||+|+.|. ++++.
T Consensus 315 ~i~~~~~~~~~~~vpviadGGi~~~~di~kAla~GA~~V~~G~~~a~~~e~pg~~~~~~g~~~k~yrgm~s~~a~~~~~~ 394 (450)
T TIGR01302 315 AVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGADAVMLGSLLAGTTESPGEYEIINGRRYKQYRGMGSLGAMTKGSS 394 (450)
T ss_pred HHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEECchhhcCCcCCCceEEECCEEEEEEeccchHHHHhcccc
Confidence 9999987653 47999999999999999999999999999999873 11111
Q ss_pred ---------------CCh-------HHHHHHHHHHHHHHHHHHHHhCCCChhhhc
Q 015722 353 ---------------DGE-------AGVRKVLQMLRDEFELTMALSGCRSLKEIT 385 (402)
Q Consensus 353 ---------------~G~-------~gv~~~i~~l~~el~~~m~~~G~~~i~el~ 385 (402)
.|. ..|.+++..+..+|+..|.++|+.+|.||+
T Consensus 395 ~ry~~~~~~~~~~~~egv~~~~~~~g~~~~~~~~~~~g~~~~~~~~g~~~~~~~~ 449 (450)
T TIGR01302 395 DRYLQDENKTKKFVPEGVEGAVPYKGSVLELLPQLVGGLKSGMGYVGARSIDELR 449 (450)
T ss_pred ccccccccccccccCCceEEcccccCcHHHHHHHHHHHHHHhhhccCcCcHHHHh
Confidence 111 128899999999999999999999999986
No 47
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.84 E-value=2.1e-19 Score=185.82 Aligned_cols=146 Identities=26% Similarity=0.317 Sum_probs=119.8
Q ss_pred CCCccHHHHHHHHHcc-CccEEEEeccCHHHHHHHHHhCCcEEEEecCcccC------CCCCcchHHHHHHHHHHhcC-C
Q 015722 243 DRSLNWKDVKWLQTIT-SLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQ------LDYVPATVMALEEVVQAAKG-R 314 (402)
Q Consensus 243 d~~~~~~~i~~lr~~~-~~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~~------~d~~~~~~~~l~~i~~~~~~-~ 314 (402)
++....+.++++++.+ ++||++..+.|.+.++.+.++|||+|.|+..+|+. ..+|.++...+.++++++.. +
T Consensus 249 ~~~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~ 328 (475)
T TIGR01303 249 HQVKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKLG 328 (475)
T ss_pred CcHHHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHhCCCEEEECCcCCccccCccccCCCCchHHHHHHHHHHHHHcC
Confidence 3444567799999987 79999977999999999999999999998777752 24588888888888765532 7
Q ss_pred CeEEEecCCCCHHHHHHHHHcCcCEEEEchHHH---------------------Hhhhc---------------------
Q 015722 315 VPVFLDGGVRRGTDVFKALALGASGVFVGRPVP---------------------FSLAV--------------------- 352 (402)
Q Consensus 315 i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l---------------------~~~~~--------------------- 352 (402)
+|||++|||+++.|++|||++||++||+|+.|- ++++.
T Consensus 329 ~~viadGgi~~~~di~kala~GA~~vm~g~~~ag~~espg~~~~~~~g~~~k~yrGmgs~~a~~~~~~~~ry~~~~~~~~ 408 (475)
T TIGR01303 329 GHVWADGGVRHPRDVALALAAGASNVMVGSWFAGTYESPGDLMRDRDGRPYKESFGMASKRAVVARTGADNAFDRARKAL 408 (475)
T ss_pred CcEEEeCCCCCHHHHHHHHHcCCCEEeechhhcccccCCCceEEeECCEEEEEEecccCHHHHhhccccchhhhhhcccc
Confidence 999999999999999999999999999999762 11111
Q ss_pred --CChHH-----------HHHHHHHHHHHHHHHHHHhCCCChhhhcccc
Q 015722 353 --DGEAG-----------VRKVLQMLRDEFELTMALSGCRSLKEITRNH 388 (402)
Q Consensus 353 --~G~~g-----------v~~~i~~l~~el~~~m~~~G~~~i~el~~~~ 388 (402)
.|.+| +.+++..+..+|+..|.++|+.+|.||+...
T Consensus 409 v~eGv~~~~~~~~~~~g~~~~~i~~~~~gl~s~~~y~g~~~i~~~~~~~ 457 (475)
T TIGR01303 409 FEEGISTSRMGLDPDRGGVEDLIDHIISGVRSSCTYAGASSLEEFHERA 457 (475)
T ss_pred ccCceecccccccCCCCCHHHHHHHHHHHHHHHhhhcCCCcHHHHHhCC
Confidence 23232 7789999999999999999999999998763
No 48
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=99.84 E-value=3.8e-19 Score=175.35 Aligned_cols=241 Identities=18% Similarity=0.174 Sum_probs=169.0
Q ss_pred ccceeecCcccCCceeecccccccccCChhhHHHHHHHHHcCCeEEec-CCc--------------------------cC
Q 015722 94 DMTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLS-SWA--------------------------TS 146 (402)
Q Consensus 94 d~st~i~G~~l~~Pi~iAPm~~~~~~~~~ge~ala~aa~~~G~~~~vs-~~~--------------------------~~ 146 (402)
|++|+++|.+++.||++|.-... .+....+.+.+.|..+++. |.. +.
T Consensus 1 dL~~~~~Gl~l~NPv~~AsG~~~------~~~e~~~~~~~~g~Gavv~ktit~~p~~gn~~pr~~~~~~~~~N~~Gl~n~ 74 (310)
T PRK02506 1 STSTQIAGFKFDNCLMNAAGVYC------MTKEELEEVEASAAGAFVTKSATLEPRPGNPEPRYADTPLGSINSMGLPNL 74 (310)
T ss_pred CCceEECCEECCCCCEeCCCCCC------CCHHHHHHHHHcCCcEEEeCccCCCCCCCCCCCeEEECcchhhccCCCCCc
Confidence 68999999999999999874332 1344455577888776652 221 01
Q ss_pred CHH----HHhh---cC-CCceEEEEeecCChhHHHHHHHHHHHcC-CcEEEEecCCCCCCchhHHHhhhcCCCCcccccc
Q 015722 147 SVE----EVSS---TG-PGIRFFQLYVTKHRNVDAQLVKRAERAG-FKAIALTVDTPRLGRREADIKNRFVLPPHLTLKN 217 (402)
Q Consensus 147 s~e----ei~~---~~-~~~~~~QLy~~~d~~~~~~~l~ra~~~G-~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~ 217 (402)
.++ ++.+ .. ..+...++. ..+.+...+.+++++++| +++|.+|+.||.... + ..
T Consensus 75 g~~~~~~~i~~~~~~~~~~pvI~Si~-G~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~~~-------------~---~~ 137 (310)
T PRK02506 75 GFDYYLDYVLELQKKGPNKPHFLSVV-GLSPEETHTILKKIQASDFNGLVELNLSCPNVPG-------------K---PQ 137 (310)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEEE-eCcHHHHHHHHHHHhhcCCCCEEEEECCCCCCCC-------------c---cc
Confidence 122 2221 11 145667775 556777788899999888 899999999995210 0 00
Q ss_pred ccccccccCCCCCchhhHHHhhhhcCCCccHHHHHHHHHccCccEEEEeccCH---HHHHHH---HHhCCcEEEEecCc-
Q 015722 218 YEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTA---EDASLA---IQYGAAGIIVSNHG- 290 (402)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~Pv~vK~~~~~---~da~~a---~~aGad~I~vsn~g- 290 (402)
+ ..|++...+.++++++.+++||++|..... +.++.+ .+.|+++|...|.-
T Consensus 138 --------------------~--g~d~~~~~~i~~~v~~~~~~Pv~vKlsp~~~~~~~a~~~~~~~~~g~~~i~~~nt~~ 195 (310)
T PRK02506 138 --------------------I--AYDFETTEQILEEVFTYFTKPLGVKLPPYFDIVHFDQAAAIFNKFPLAFVNCINSIG 195 (310)
T ss_pred --------------------c--ccCHHHHHHHHHHHHHhcCCccEEecCCCCCHHHHHHHHHHhCcCceEEEEEeccCC
Confidence 0 013444567899999999999999987432 223333 35577877776641
Q ss_pred -cc--------C-C-----CC---Cc----chHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHHH
Q 015722 291 -AR--------Q-L-----DY---VP----ATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 348 (402)
Q Consensus 291 -g~--------~-~-----d~---~~----~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~ 348 (402)
+. . + .+ |+ ..+..+.++++.++.++|||++|||.+++|+++++.+||++||+|+++++
T Consensus 196 ~~~~iD~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqv~ta~~~ 275 (310)
T PRK02506 196 NGLVIDPEDETVVIKPKNGFGGIGGDYIKPTALANVRAFYQRLNPSIQIIGTGGVKTGRDAFEHILCGASMVQVGTALHK 275 (310)
T ss_pred CceEEecCCCCccccCCCCCCcCCchhccHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCHHhhhHHHHH
Confidence 11 0 1 11 12 24566777777776689999999999999999999999999999999987
Q ss_pred hhhcCChHHHHHHHHHHHHHHHHHHHHhCCCChhhhccc
Q 015722 349 SLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRN 387 (402)
Q Consensus 349 ~~~~~G~~gv~~~i~~l~~el~~~m~~~G~~~i~el~~~ 387 (402)
. |+ .++..+.+||+.+|...|+++++|+++.
T Consensus 276 ~----gp----~~~~~i~~~L~~~l~~~g~~si~e~~G~ 306 (310)
T PRK02506 276 E----GP----AVFERLTKELKAIMAEKGYQSLEDFRGK 306 (310)
T ss_pred h----Ch----HHHHHHHHHHHHHHHHhCCCCHHHHhCh
Confidence 2 33 3678899999999999999999999874
No 49
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.83 E-value=8.5e-19 Score=175.21 Aligned_cols=233 Identities=15% Similarity=0.173 Sum_probs=159.1
Q ss_pred CCCCccceeecCcccCCceeecccccccccCChhhHHHHHHHHHcCCeEEec-CCccC----------------------
Q 015722 90 VSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLS-SWATS---------------------- 146 (402)
Q Consensus 90 ~~~~d~st~i~G~~l~~Pi~iAPm~~~~~~~~~ge~ala~aa~~~G~~~~vs-~~~~~---------------------- 146 (402)
..+.+++|+++|.++++||++|. |.. ++....+.+.++|..+++. |....
T Consensus 44 ~~~~~L~~~~~Gl~l~nPi~~As-G~~------~~~~~~~~~~~~G~Gavv~ktvt~~p~~gn~~pr~~~~~~~~~~~N~ 116 (344)
T PRK05286 44 YTDPRLPVTVMGLTFPNPVGLAA-GFD------KNGEAIDALGALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINR 116 (344)
T ss_pred CCCCCCceEECCEECCCCCEECC-CCC------CChHHHHHHHHcCCCEEEeCCcCCCCCCCCCCCCEEecccccccccC
Confidence 45778999999999999998866 222 2445666688888877662 22110
Q ss_pred ------CHH----HHhhc-CCCceEEEEeecC------ChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCC
Q 015722 147 ------SVE----EVSST-GPGIRFFQLYVTK------HRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVL 209 (402)
Q Consensus 147 ------s~e----ei~~~-~~~~~~~QLy~~~------d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~ 209 (402)
.++ ++.+. ..-|.++++.... ..+...++++++.+ ++++|.+|+.||....
T Consensus 117 ~gl~n~g~~~~~~~l~~~~~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~-~ad~lelN~scP~~~g----------- 184 (344)
T PRK05286 117 MGFNNDGADALAERLKKAYRGIPLGINIGKNKDTPLEDAVDDYLICLEKLYP-YADYFTVNISSPNTPG----------- 184 (344)
T ss_pred CCCCCHhHHHHHHHHHHhcCCCcEEEEEecCCCCCcccCHHHHHHHHHHHHh-hCCEEEEEccCCCCCC-----------
Confidence 011 22221 1234677775321 23444555555544 4889999998885310
Q ss_pred CCccccccccccccccCCCCCchhhHHHhhhhcCCCccHHHHHHHHHccC-----ccEEEEeccC------HHHHHHHHH
Q 015722 210 PPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITS-----LPILVKGVLT------AEDASLAIQ 278 (402)
Q Consensus 210 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~-----~Pv~vK~~~~------~~da~~a~~ 278 (402)
.+. ..++....+.++++|+.++ +||++|.... .+.++.+.+
T Consensus 185 -----~~~-----------------------~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~ 236 (344)
T PRK05286 185 -----LRD-----------------------LQYGEALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADLALE 236 (344)
T ss_pred -----ccc-----------------------ccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHHHHH
Confidence 000 0123334477899999886 9999998742 234678889
Q ss_pred hCCcEEEEecCcc-------------cCCCCCcc----hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEE
Q 015722 279 YGAAGIIVSNHGA-------------RQLDYVPA----TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVF 341 (402)
Q Consensus 279 aGad~I~vsn~gg-------------~~~d~~~~----~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~ 341 (402)
+|+|+|+++|.-. ++...|++ .++.+.++++.+++++|||++|||++++|+.+++.+|||+|+
T Consensus 237 ~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~ 316 (344)
T PRK05286 237 HGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQ 316 (344)
T ss_pred hCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHH
Confidence 9999999988420 00011222 566788888887667999999999999999999999999999
Q ss_pred EchHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHhC
Q 015722 342 VGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSG 377 (402)
Q Consensus 342 iGr~~l~~~~~~G~~gv~~~i~~l~~el~~~m~~~G 377 (402)
+||++++. |+ .++..+++||+.+|...|
T Consensus 317 v~~~~~~~----gP----~~~~~i~~~L~~~l~~~g 344 (344)
T PRK05286 317 IYSGLIYE----GP----GLVKEIVRGLARLLRRDG 344 (344)
T ss_pred HHHHHHHh----Cc----hHHHHHHHHHHHHHHhcC
Confidence 99999862 34 367889999999998765
No 50
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=99.83 E-value=4.4e-19 Score=176.50 Aligned_cols=244 Identities=19% Similarity=0.178 Sum_probs=172.8
Q ss_pred cccCCceeecccccccccCChhhHHHHHHHHHcCC-eEEecCCccC------CHHHHhhcCC--CceEEEEeecCChhHH
Q 015722 102 FNISMPIMIAPTAFQKMAHPEGECATARAASAAGT-IMTLSSWATS------SVEEVSSTGP--GIRFFQLYVTKHRNVD 172 (402)
Q Consensus 102 ~~l~~Pi~iAPm~~~~~~~~~ge~ala~aa~~~G~-~~~vs~~~~~------s~eei~~~~~--~~~~~QLy~~~d~~~~ 172 (402)
.....|+++|||.+.+ |.++++.|++.|. .++.+++.+. ...+.....+ .+..+||+ ..|++.+
T Consensus 7 ~~~~~~~~lAPM~g~t------d~~fR~~~~~~g~~~~~~temv~~~~l~~~~~~~~l~~~~~e~p~~vQl~-g~~p~~~ 79 (333)
T PRK11815 7 KLPSRRFSVAPMMDWT------DRHCRYFHRLLSRHALLYTEMVTTGAIIHGDRERLLAFDPEEHPVALQLG-GSDPADL 79 (333)
T ss_pred cCCCCCEEEeCCCCCc------CHHHHHHHHHhCCCCEEEECCEEeccccccCHHHHhccCCCCCcEEEEEe-CCCHHHH
Confidence 3456799999999886 8899999999997 6777887432 1122222222 67899998 7899999
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCCccHHHHH
Q 015722 173 AQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVK 252 (402)
Q Consensus 173 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~ 252 (402)
.+.+++++++|+++|.||++||..-.| . + +.+..+. .+|++..+.++
T Consensus 80 ~~aA~~~~~~g~d~IdlN~gCP~~~v~---------------~--------------~--~~Gs~L~--~~p~~~~eiv~ 126 (333)
T PRK11815 80 AEAAKLAEDWGYDEINLNVGCPSDRVQ---------------N--------------G--RFGACLM--AEPELVADCVK 126 (333)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCHHHcc---------------C--------------C--CeeeHHh--cCHHHHHHHHH
Confidence 999999999999999999999963100 0 0 0011222 36777888999
Q ss_pred HHHHccCccEEEEecc------C----HHHHHHHHHhCCcEEEEecCccc---CCC-------CCcchHHHHHHHHHHhc
Q 015722 253 WLQTITSLPILVKGVL------T----AEDASLAIQYGAAGIIVSNHGAR---QLD-------YVPATVMALEEVVQAAK 312 (402)
Q Consensus 253 ~lr~~~~~Pv~vK~~~------~----~~da~~a~~aGad~I~vsn~gg~---~~d-------~~~~~~~~l~~i~~~~~ 312 (402)
.+++.+++||.+|... + .+-++.+.++|+|+|+|+ +++ +.. ..+..++.+.++++.+
T Consensus 127 avr~~v~~pVsvKiR~g~~~~~t~~~~~~~~~~l~~aG~d~i~vh--~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~- 203 (333)
T PRK11815 127 AMKDAVSIPVTVKHRIGIDDQDSYEFLCDFVDTVAEAGCDTFIVH--ARKAWLKGLSPKENREIPPLDYDRVYRLKRDF- 203 (333)
T ss_pred HHHHHcCCceEEEEEeeeCCCcCHHHHHHHHHHHHHhCCCEEEEc--CCchhhcCCCccccccCCCcCHHHHHHHHHhC-
Confidence 9999999999999642 1 233677889999999994 332 111 1334688888888764
Q ss_pred CCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHHH-----hhh---cCCh----HHHHHHHHHHHHHHHHHHHHhCCCC
Q 015722 313 GRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF-----SLA---VDGE----AGVRKVLQMLRDEFELTMALSGCRS 380 (402)
Q Consensus 313 ~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~-----~~~---~~G~----~gv~~~i~~l~~el~~~m~~~G~~~ 380 (402)
.++|||++|||++.+|+.++++ |||+|||||+++. ... ..|+ ....++++.+.++++..... |. .
T Consensus 204 ~~iPVI~nGgI~s~eda~~~l~-~aDgVmIGRa~l~nP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~ 280 (333)
T PRK11815 204 PHLTIEINGGIKTLEEAKEHLQ-HVDGVMIGRAAYHNPYLLAEVDRELFGEPAPPLSRSEVLEAMLPYIERHLAQ-GG-R 280 (333)
T ss_pred CCCeEEEECCcCCHHHHHHHHh-cCCEEEEcHHHHhCCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHc-Cc-h
Confidence 2699999999999999999997 8999999996543 211 1122 23456667777777776663 43 4
Q ss_pred hhhhcccceec
Q 015722 381 LKEITRNHIVT 391 (402)
Q Consensus 381 i~el~~~~l~~ 391 (402)
+..+++.....
T Consensus 281 ~~~~rk~~~~y 291 (333)
T PRK11815 281 LNHITRHMLGL 291 (333)
T ss_pred HHHHHHHHHHH
Confidence 66666664443
No 51
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=99.83 E-value=5.5e-20 Score=181.24 Aligned_cols=242 Identities=23% Similarity=0.294 Sum_probs=158.8
Q ss_pred eecccccccccCChhhHHHHHHHHHcCCe-EEecCCccC-----C---HHHHhhcCC--CceEEEEeecCChhHHHHHHH
Q 015722 109 MIAPTAFQKMAHPEGECATARAASAAGTI-MTLSSWATS-----S---VEEVSSTGP--GIRFFQLYVTKHRNVDAQLVK 177 (402)
Q Consensus 109 ~iAPm~~~~~~~~~ge~ala~aa~~~G~~-~~vs~~~~~-----s---~eei~~~~~--~~~~~QLy~~~d~~~~~~~l~ 177 (402)
++|||.+.+ +.++++.+++.|.. .+++++.+. . ..+.....+ .|..+||. ..|++.+.+.++
T Consensus 1 ~LAPM~g~t------d~~fR~l~~~~g~~~~~~temi~a~~~~~~~~~~~~~~~~~~~~~p~~~Ql~-g~~~~~~~~aa~ 73 (309)
T PF01207_consen 1 ILAPMAGVT------DLPFRRLCREFGADDLTYTEMISAKAILRSNKKTIRLLPFLPNERPLIVQLF-GNDPEDLAEAAE 73 (309)
T ss_dssp -E---TTTS------SHHHHHHHHCCTSSSBEE-S-EEHHHHHCT-HHHHHHS-GCC-T-TEEEEEE--S-HHHHHHHHH
T ss_pred CccCCCCCc------hHHHHHHHHHHCCCeEEEcCCEEECcccccccceeecccccccccceeEEEe-eccHHHHHHHHH
Confidence 589998876 89999999999999 888887432 1 011111222 57999998 789999999999
Q ss_pred HHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCCccHHHHHHHHHc
Q 015722 178 RAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTI 257 (402)
Q Consensus 178 ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~ 257 (402)
.+.+.|+++|+||++||.. +++.. +.+..++ .+|+...+.|+.+++.
T Consensus 74 ~~~~~~~~~IDlN~GCP~~---------------~v~~~----------------g~Ga~Ll--~~p~~~~~iv~~~~~~ 120 (309)
T PF01207_consen 74 IVAELGFDGIDLNMGCPAP---------------KVTKG----------------GAGAALL--KDPDLLAEIVKAVRKA 120 (309)
T ss_dssp HHCCTT-SEEEEEE---SH---------------HHHHC----------------T-GGGGG--C-HHHHHHHHHHHHHH
T ss_pred hhhccCCcEEeccCCCCHH---------------HHhcC----------------CcChhhh--cChHHhhHHHHhhhcc
Confidence 9988999999999999963 11111 1223343 3677777889999999
Q ss_pred cCccEEEEecc--------CHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHH
Q 015722 258 TSLPILVKGVL--------TAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDV 329 (402)
Q Consensus 258 ~~~Pv~vK~~~--------~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv 329 (402)
+++||.+|... +.+-++.+.++|+++|+|.+.-..|...+++.|+.++++++.+ ++|||++|||.|.+|+
T Consensus 121 ~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~--~ipvi~NGdI~s~~d~ 198 (309)
T PF01207_consen 121 VPIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEAL--PIPVIANGDIFSPEDA 198 (309)
T ss_dssp -SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC---TSEEEEESS--SHHHH
T ss_pred cccceEEecccccccchhHHHHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhcc--cceeEEcCccCCHHHH
Confidence 99999999752 2345788999999999993332335667799999999999988 6999999999999999
Q ss_pred HHHHH-cCcCEEEEch-----HHHHhh---hcCCh----HHHHHHHHHHHHHHHHHHHHhC-CCChhhhcccceecc
Q 015722 330 FKALA-LGASGVFVGR-----PVPFSL---AVDGE----AGVRKVLQMLRDEFELTMALSG-CRSLKEITRNHIVTH 392 (402)
Q Consensus 330 ~kal~-lGAd~V~iGr-----~~l~~~---~~~G~----~gv~~~i~~l~~el~~~m~~~G-~~~i~el~~~~l~~~ 392 (402)
.+.+. .|+|+||||| ||+|.. ...|. .-+.+.++.+.++++.+....| ...+..+++......
T Consensus 199 ~~~~~~tg~dgvMigRgal~nP~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~y~ 275 (309)
T PF01207_consen 199 ERMLEQTGADGVMIGRGALGNPWLFREIDQIKEGEPEPFPPIAERLDIILRHYDYMEEFYGEEKALRQMRKHLKWYF 275 (309)
T ss_dssp HHHCCCH-SSEEEESHHHCC-CCHHCHHHCHHHHTT--S--HHHHHHHHHHHHHHHHHHHHCCHHHHHHHTTCCCCT
T ss_pred HHHHHhcCCcEEEEchhhhhcCHHhhhhhhhccCCCCCCCchhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHH
Confidence 99998 4999999999 667752 11111 1145677788888888888776 346777776655443
No 52
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=99.82 E-value=7.7e-19 Score=175.04 Aligned_cols=255 Identities=24% Similarity=0.283 Sum_probs=152.2
Q ss_pred cccCCceeecccccccccCChhhHHHHHHHHHcCCeEEecCCccCCHHHHhhcCCCceEEEEeecCChhHHHHHHHHHHH
Q 015722 102 FNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAER 181 (402)
Q Consensus 102 ~~l~~Pi~iAPm~~~~~~~~~ge~ala~aa~~~G~~~~vs~~~~~s~eei~~~~~~~~~~QLy~~~d~~~~~~~l~ra~~ 181 (402)
.+++.||+++.|+++.+ .++.-.++|+++..+|+....++. ..+.++..... ....+|+- ........+.++
T Consensus 62 ~~l~~p~~is~MS~GaL-S~~a~~Ala~ga~~~G~~~ntGEG-g~~~~~~~~~~-~~~I~Q~~-sg~fGv~~~~l~---- 133 (368)
T PF01645_consen 62 LELSIPFMISAMSYGAL-SEEAKEALAKGANMAGTASNTGEG-GELPEERKAAK-DLRIKQIA-SGRFGVRPEYLK---- 133 (368)
T ss_dssp HHHHTTEEEEEB-CTTC--HHHHHHHHHHHHHCT-EEEETTT----GGGCSB-T-TSSEEEE--TT-TT--HHHHC----
T ss_pred hhheeeeecccCChhhc-CHHHHHHHHHHHHHhCceEecCCC-CCCHHHhcccC-CceEEEcC-CCCCCCCHHHhc----
Confidence 46899999999999865 456788999999999988876654 45555544332 22378864 555666655553
Q ss_pred cCCcEEEEecCCCCCCchhHHHhhhcCCCC-ccccccccccccccCCCCCchhhHHHhhhhcCCCc-cH----HHHHHHH
Q 015722 182 AGFKAIALTVDTPRLGRREADIKNRFVLPP-HLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSL-NW----KDVKWLQ 255 (402)
Q Consensus 182 ~G~~ai~itvd~p~~g~r~~d~r~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~----~~i~~lr 255 (402)
.+++|.|-+..-.... .+-.+|. |++.. +..+. ........+++..++++ +. +.|+++|
T Consensus 134 -~a~~iEIKigQGAKpG------~GG~Lp~~KV~~~-ia~~R-------~~~~g~~~iSP~~h~di~s~edl~~~I~~Lr 198 (368)
T PF01645_consen 134 -QADMIEIKIGQGAKPG------EGGHLPGEKVTEE-IARIR-------GVPPGVDLISPPPHHDIYSIEDLAQLIEELR 198 (368)
T ss_dssp -C-SEEEEE---TTSTT------T--EE-GGG--HH-HHHHH-------TS-TT--EE--SS-TT-SSHHHHHHHHHHHH
T ss_pred -CCCeEEEEEecCcccc------CcceechhhchHH-HHHHh-------CCCCCCccccCCCCCCcCCHHHHHHHHHHHH
Confidence 5688888776433100 1111222 22211 00000 00000112222222222 22 4589999
Q ss_pred Hcc-CccEEEEecc--CHHHHH-HHHHhCCcEEEEecC-cccC-------CCCCcchHHHHHHHHHHh-----cCCCeEE
Q 015722 256 TIT-SLPILVKGVL--TAEDAS-LAIQYGAAGIIVSNH-GARQ-------LDYVPATVMALEEVVQAA-----KGRVPVF 318 (402)
Q Consensus 256 ~~~-~~Pv~vK~~~--~~~da~-~a~~aGad~I~vsn~-gg~~-------~d~~~~~~~~l~~i~~~~-----~~~i~vi 318 (402)
+.. ..||.+|.+. ..++.. .+.++|+|.|+++++ ||+. .+.|.|....|.++.+.+ ++++.++
T Consensus 199 ~~~~~~pVgvKl~~~~~~~~~~~~~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP~~~~l~~a~~~L~~~glr~~V~Li 278 (368)
T PF01645_consen 199 ELNPGKPVGVKLVAGRGVEDIAAGAAKAGADFITIDGAEGGTGAAPLTSMDHVGLPTEYALARAHQALVKNGLRDRVSLI 278 (368)
T ss_dssp HH-TTSEEEEEEE-STTHHHHHHHHHHTT-SEEEEE-TT---SSEECCHHHHC---HHHHHHHHHHHHHCTT-CCCSEEE
T ss_pred hhCCCCcEEEEECCCCcHHHHHHhhhhccCCEEEEeCCCCCCCCCchhHHhhCCCcHHHHHHHHHHHHHHcCCCCceEEE
Confidence 988 8999999873 344444 488999999999987 4442 246888888899988876 4689999
Q ss_pred EecCCCCHHHHHHHHHcCcCEEEEchHHHHhhhcC-----------------------------ChHHHHHHHHHHHHHH
Q 015722 319 LDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVD-----------------------------GEAGVRKVLQMLRDEF 369 (402)
Q Consensus 319 a~GGI~~g~dv~kal~lGAd~V~iGr~~l~~~~~~-----------------------------G~~gv~~~i~~l~~el 369 (402)
++||++|+.|++|+++||||+|.+||++|+++.|. +.+.|.++++.+.+|+
T Consensus 279 ~sGgl~t~~dv~kalaLGAD~v~igt~~liAlGC~~~~~C~~~~CP~Giatq~~~l~~~l~~~~~~~~v~n~~~~~~~el 358 (368)
T PF01645_consen 279 ASGGLRTGDDVAKALALGADAVYIGTAALIALGCIQCRKCHTGTCPVGIATQDPKLRKRLDVEEKAERVANFLKACAEEL 358 (368)
T ss_dssp EESS--SHHHHHHHHHCT-SEEE-SHHHHHHCT--S---CCCT--TTSSS---CCHH--CT----HHHHHHHHHHHHHHH
T ss_pred EeCCccCHHHHHHHHhcCCCeeEecchhhhhcchHHHhcccCCCCCceeeecCcccccccccccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988752 3567999999999999
Q ss_pred HHHHHHhCCC
Q 015722 370 ELTMALSGCR 379 (402)
Q Consensus 370 ~~~m~~~G~~ 379 (402)
+..|..+|.+
T Consensus 359 ~~~~~a~G~~ 368 (368)
T PF01645_consen 359 REILAALGKR 368 (368)
T ss_dssp HHHHHHHT-S
T ss_pred HHHHHHhCCC
Confidence 9999999964
No 53
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=99.80 E-value=1.1e-17 Score=166.24 Aligned_cols=248 Identities=18% Similarity=0.207 Sum_probs=163.0
Q ss_pred chhhHHHhHHhhhccccccccc-CCCCCCccceeecCcccCCceeecccccccccCChhhHHHHHHHHHcCCeEEec-CC
Q 015722 66 DQWTLQENRNAFSRILFRPRIL-RDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLS-SW 143 (402)
Q Consensus 66 ~e~t~~~N~~~~~~~~l~pr~l-~~~~~~d~st~i~G~~l~~Pi~iAPm~~~~~~~~~ge~ala~aa~~~G~~~~vs-~~ 143 (402)
-|.+++-....++-+...|-.+ ....+.|++|+++|++++.||++|. |.. ++....+.+.+.|..+++. |.
T Consensus 9 ~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~Gl~l~nPi~~As-G~~------~~~~~~~~~~~~G~Gavv~kti 81 (327)
T cd04738 9 PETAHRLAIRALKLGLGPPLLLLLVYDDPRLEVEVFGLTFPNPVGLAA-GFD------KNAEAIDALLALGFGFVEVGTV 81 (327)
T ss_pred HHHHHHHHHHHHHhcCCCCCccccCCCCCCcceEECCEECCCCCEeCc-CCC------CCHHHHHHHHHCCCcEEEEecc
Confidence 4566667777777777666332 4567789999999999999998866 221 2334455555788776652 22
Q ss_pred cc----------------------------CC----HHHHhhcC--CCceEEEEeecCC------hhHHHHHHHHHHHcC
Q 015722 144 AT----------------------------SS----VEEVSSTG--PGIRFFQLYVTKH------RNVDAQLVKRAERAG 183 (402)
Q Consensus 144 ~~----------------------------~s----~eei~~~~--~~~~~~QLy~~~d------~~~~~~~l~ra~~~G 183 (402)
.. .. ++++.+.. ..|..+|+..... .+...++++++.. +
T Consensus 82 t~~~~~gn~~pr~~~~~~~~~~~n~~g~~n~g~~~~~~~l~~~~~~~~plivsi~g~~~~~~~~~~~d~~~~~~~~~~-~ 160 (327)
T cd04738 82 TPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADAVAKRLKKRRPRGGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGP-Y 160 (327)
T ss_pred CCCCCCCCCCCCEEEccCccceeecCCCCCccHHHHHHHHHHhccCCCeEEEEEeCCCCCcccccHHHHHHHHHHHHh-h
Confidence 11 01 12232222 2567888864321 2334444455443 3
Q ss_pred CcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCCccHHHHHHHHHccC----
Q 015722 184 FKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITS---- 259 (402)
Q Consensus 184 ~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~---- 259 (402)
+++|.+|+.||.... .+. ..++....+.++++++.++
T Consensus 161 ad~ielN~scP~~~g----------------~~~-----------------------~~~~~~~~~iv~av~~~~~~~~~ 201 (327)
T cd04738 161 ADYLVVNVSSPNTPG----------------LRD-----------------------LQGKEALRELLTAVKEERNKLGK 201 (327)
T ss_pred CCEEEEECCCCCCCc----------------ccc-----------------------ccCHHHHHHHHHHHHHHHhhccc
Confidence 899999999996310 000 0133334477889988875
Q ss_pred -ccEEEEecc--C----HHHHHHHHHhCCcEEEEecCcc-c------------CCCCCc----chHHHHHHHHHHhcCCC
Q 015722 260 -LPILVKGVL--T----AEDASLAIQYGAAGIIVSNHGA-R------------QLDYVP----ATVMALEEVVQAAKGRV 315 (402)
Q Consensus 260 -~Pv~vK~~~--~----~~da~~a~~aGad~I~vsn~gg-~------------~~d~~~----~~~~~l~~i~~~~~~~i 315 (402)
+||++|... + .+.++.+.++|+|+|+++|.-. . +...|+ .+++.+.++++.+++++
T Consensus 202 ~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~i 281 (327)
T cd04738 202 KVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKI 281 (327)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCCC
Confidence 999999863 2 2346778999999999987411 0 001122 34678888888886679
Q ss_pred eEEEecCCCCHHHHHHHHHcCcCEEEEchHHHHhhhcCChHHHHHHHHHHHHH
Q 015722 316 PVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDE 368 (402)
Q Consensus 316 ~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~~~~~~G~~gv~~~i~~l~~e 368 (402)
|||++|||+|++|+.+++.+|||+|||||++++. |+. ++..+++|
T Consensus 282 pIi~~GGI~t~~da~e~l~aGAd~V~vg~~~~~~----gP~----~~~~i~~~ 326 (327)
T cd04738 282 PIIGVGGISSGEDAYEKIRAGASLVQLYTGLVYE----GPG----LVKRIKRE 326 (327)
T ss_pred cEEEECCCCCHHHHHHHHHcCCCHHhccHHHHhh----CcH----HHHHHHhc
Confidence 9999999999999999999999999999999863 443 44555554
No 54
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=99.79 E-value=1.3e-17 Score=163.27 Aligned_cols=223 Identities=19% Similarity=0.125 Sum_probs=153.2
Q ss_pred eeecCcccCCceeecccccccccCChhhHHHHHHHHHcCCeEEec-CCcc--------------------------CCH-
Q 015722 97 TTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLS-SWAT--------------------------SSV- 148 (402)
Q Consensus 97 t~i~G~~l~~Pi~iAPm~~~~~~~~~ge~ala~aa~~~G~~~~vs-~~~~--------------------------~s~- 148 (402)
++++|.+++.||++|.-..+ .+....+.+.+.|..+++. |... ..+
T Consensus 1 ~~~~Gl~l~nPi~~Asg~~~------~~~e~~~~~~~~G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~N~~G~~n~g~~ 74 (294)
T cd04741 1 VTPPGLTISPPLMNAAGPWC------TTLEDLLELAASSTGAVTTRSSTLAGRPGNPEPRYYAFPLGSINSLGLPNLGLD 74 (294)
T ss_pred CccCCeeCCCCCEECCCCCC------CCHHHHHHHHHcCCcEEEeCcccCCCCCCCCCCcEEecCccccccccCCCcCHH
Confidence 57899999999999884332 2555666666788877662 2210 012
Q ss_pred ---HHHhhc------CCCceEEEEeecCChhHHHHHHHHHHHc---CCcEEEEecCCCCCCchhHHHhhhcCCCCccccc
Q 015722 149 ---EEVSST------GPGIRFFQLYVTKHRNVDAQLVKRAERA---GFKAIALTVDTPRLGRREADIKNRFVLPPHLTLK 216 (402)
Q Consensus 149 ---eei~~~------~~~~~~~QLy~~~d~~~~~~~l~ra~~~---G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~ 216 (402)
+++.+. ...|..+|+... .+...+.++++++. |+++|.+|+.||..... .
T Consensus 75 ~~~~~i~~~~~~~~~~~~pvivsi~g~--~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~----------------~ 136 (294)
T cd04741 75 YYLEYIRTISDGLPGSAKPFFISVTGS--AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGK----------------P 136 (294)
T ss_pred HHHHHHHHHhhhccccCCeEEEECCCC--HHHHHHHHHHHHhhccccccEEEEECCCCCCCCc----------------c
Confidence 223221 125788998743 67777777877775 69999999999963100 0
Q ss_pred cccccccccCCCCCchhhHHHhhhhcCCCccHHHHHHHHHccCccEEEEeccC--H----HHHHHHHHh--CCcEEEEec
Q 015722 217 NYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLT--A----EDASLAIQY--GAAGIIVSN 288 (402)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~Pv~vK~~~~--~----~da~~a~~a--Gad~I~vsn 288 (402)
.+ ..+++...+.++++++.+++||++|+... . +.++.+.++ |+|+|++.|
T Consensus 137 --------------------~~--~~~~~~~~~i~~~v~~~~~iPv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~N 194 (294)
T cd04741 137 --------------------PP--AYDFDATLEYLTAVKAAYSIPVGVKTPPYTDPAQFDTLAEALNAFACPISFITATN 194 (294)
T ss_pred --------------------cc--cCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEEc
Confidence 00 01445566889999999999999998742 2 234555677 999999876
Q ss_pred Ccc---------cC-------CCCCcc-------hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchH
Q 015722 289 HGA---------RQ-------LDYVPA-------TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRP 345 (402)
Q Consensus 289 ~gg---------~~-------~d~~~~-------~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~ 345 (402)
+-+ +. ..+|.+ .+..+.++++.++.++|||++|||.+++|+++++.+|||+||+||.
T Consensus 195 t~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~l~aGA~~Vqv~ta 274 (294)
T cd04741 195 TLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRRLLPSEIQIIGVGGVLDGRGAFRMRLAGASAVQVGTA 274 (294)
T ss_pred cCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHHhcCCCCCEEEeCCCCCHHHHHHHHHcCCCceeEchh
Confidence 421 11 112333 3455677777775569999999999999999999999999999999
Q ss_pred HHHhhhcCChHHHHHHHHHHHHHHHHHH
Q 015722 346 VPFSLAVDGEAGVRKVLQMLRDEFELTM 373 (402)
Q Consensus 346 ~l~~~~~~G~~gv~~~i~~l~~el~~~m 373 (402)
+++. |+ .+++.+.+||+.+|
T Consensus 275 ~~~~----gp----~~~~~i~~~L~~~~ 294 (294)
T cd04741 275 LGKE----GP----KVFARIEKELEDIW 294 (294)
T ss_pred hhhc----Cc----hHHHHHHHHHHhhC
Confidence 8862 44 35677888888764
No 55
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=99.76 E-value=2.6e-17 Score=155.05 Aligned_cols=200 Identities=20% Similarity=0.209 Sum_probs=148.0
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCeEEecCCccC-C-----HH--HHhhcC--CCceEEEEeecCChhHHHHHH
Q 015722 107 PIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATS-S-----VE--EVSSTG--PGIRFFQLYVTKHRNVDAQLV 176 (402)
Q Consensus 107 Pi~iAPm~~~~~~~~~ge~ala~aa~~~G~~~~vs~~~~~-s-----~e--ei~~~~--~~~~~~QLy~~~d~~~~~~~l 176 (402)
|+++|||.+.+ ++++++.++++|.-.+.+++-.. + -+ ...... +.+..+||. ..+.+...+.+
T Consensus 1 ~~~~aPm~~~~------~~~fR~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~qi~-g~~~~~~~~aa 73 (231)
T cd02801 1 KLILAPMVGVT------DLPFRLLCRRYGADLVYTEMISAKALLRGNRKRLRLLTRNPEERPLIVQLG-GSDPETLAEAA 73 (231)
T ss_pred CeEeCCCCCCc------CHHHHHHHHHHCCCEEEecCEEEhhhhhcCHHHHHhhccCccCCCEEEEEc-CCCHHHHHHHH
Confidence 67899998765 89999999999988887776322 1 11 111111 267889997 56888889999
Q ss_pred HHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCCccHHHHHHHHH
Q 015722 177 KRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQT 256 (402)
Q Consensus 177 ~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~ 256 (402)
++++++|+++|.|++.||..-. ++. ..| ..+. .++.+..+.++++++
T Consensus 74 ~~~~~aG~d~ieln~g~p~~~~-----~~~------------------------~~G--~~l~--~~~~~~~eii~~v~~ 120 (231)
T cd02801 74 KIVEELGADGIDLNMGCPSPKV-----TKG------------------------GAG--AALL--KDPELVAEIVRAVRE 120 (231)
T ss_pred HHHHhcCCCEEEEeCCCCHHHH-----hCC------------------------Cee--ehhc--CCHHHHHHHHHHHHH
Confidence 9999999999999999985310 000 000 0111 255567788999999
Q ss_pred ccCccEEEEeccCH-------HHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHH
Q 015722 257 ITSLPILVKGVLTA-------EDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDV 329 (402)
Q Consensus 257 ~~~~Pv~vK~~~~~-------~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv 329 (402)
.++.|+.+|..... +.++.+.++|+|.|++++....+...++..++.+..+++.+ ++||+++|||++.+|+
T Consensus 121 ~~~~~v~vk~r~~~~~~~~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~--~ipvi~~Ggi~~~~d~ 198 (231)
T cd02801 121 AVPIPVTVKIRLGWDDEEETLELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAV--SIPVIANGDIFSLEDA 198 (231)
T ss_pred hcCCCEEEEEeeccCCchHHHHHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCC--CCeEEEeCCCCCHHHH
Confidence 88899999975321 23567889999999995432122234566788888888765 7999999999999999
Q ss_pred HHHHHc-CcCEEEEchHHHH
Q 015722 330 FKALAL-GASGVFVGRPVPF 348 (402)
Q Consensus 330 ~kal~l-GAd~V~iGr~~l~ 348 (402)
.+++.. |||+|++||+++.
T Consensus 199 ~~~l~~~gad~V~igr~~l~ 218 (231)
T cd02801 199 LRCLEQTGVDGVMIGRGALG 218 (231)
T ss_pred HHHHHhcCCCEEEEcHHhHh
Confidence 999998 8999999999886
No 56
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=99.76 E-value=7.2e-17 Score=157.44 Aligned_cols=207 Identities=21% Similarity=0.271 Sum_probs=148.8
Q ss_pred eeecCcccCCceeecccccccccCChhhHHHHHHHHHcCCeEEec-CCccC-----------------------------
Q 015722 97 TTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLS-SWATS----------------------------- 146 (402)
Q Consensus 97 t~i~G~~l~~Pi~iAPm~~~~~~~~~ge~ala~aa~~~G~~~~vs-~~~~~----------------------------- 146 (402)
|+++|++++.||++|..... .+....+.+.++|..+++. |....
T Consensus 1 ~~~~G~~~~nPv~~aag~~~------~~~~~~~~~~~~g~g~vv~kti~~~~~~~n~~pr~~~~~~~~~~~~~~~~~~n~ 74 (289)
T cd02810 1 VNFLGLKLKNPFGVAAGPLL------KTGELIARAAAAGFGAVVYKTVTLHPRPGNPLPRVARLPPEGESYPEQLGILNS 74 (289)
T ss_pred CeECCEECCCCCEeCCCCCC------CCHHHHHHHHHcCCCeEEeCcccCCCCCCCCCCCEEEeccccccCcccceEeec
Confidence 57899999999999886543 2556777788888766652 22100
Q ss_pred ------CHH----HHhhc----CCCceEEEEeecCChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCc
Q 015722 147 ------SVE----EVSST----GPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPH 212 (402)
Q Consensus 147 ------s~e----ei~~~----~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~ 212 (402)
.++ ++.+. ...+..+||. ..+.+...+.+++++++|+++|.||+.||.....
T Consensus 75 ~g~~~~g~~~~~~~i~~~~~~~~~~pvi~si~-g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~------------- 140 (289)
T cd02810 75 FGLPNLGLDVWLQDIAKAKKEFPGQPLIASVG-GSSKEDYVELARKIERAGAKALELNLSCPNVGGG------------- 140 (289)
T ss_pred CCCCCcCHHHHHHHHHHHHhccCCCeEEEEec-cCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCC-------------
Confidence 111 22211 1356788987 4577888889999999999999999999963110
Q ss_pred cccccccccccccCCCCCchhhHHHhhhhcCCCccHHHHHHHHHccCccEEEEec--cC----HHHHHHHHHhCCcEEEE
Q 015722 213 LTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGV--LT----AEDASLAIQYGAAGIIV 286 (402)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~Pv~vK~~--~~----~~da~~a~~aGad~I~v 286 (402)
+. +. .++....+.++++|+.+++||++|.. .+ .+.++.+.++|+|+|++
T Consensus 141 ---~~--------------------~~--~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~ 195 (289)
T cd02810 141 ---RQ--------------------LG--QDPEAVANLLKAVKAAVDIPLLVKLSPYFDLEDIVELAKAAERAGADGLTA 195 (289)
T ss_pred ---cc--------------------cc--cCHHHHHHHHHHHHHccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 00 00 13444567899999988999999976 33 34578889999999999
Q ss_pred ecC-cccC------------CCC---Cc----chHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHH
Q 015722 287 SNH-GARQ------------LDY---VP----ATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPV 346 (402)
Q Consensus 287 sn~-gg~~------------~d~---~~----~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~ 346 (402)
+|+ .++. ..+ |+ ..++.+.++++.++.++|||++|||++++|+.+++++|||+|++||++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd~V~vg~a~ 275 (289)
T cd02810 196 INTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAVQVATAL 275 (289)
T ss_pred EcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCccHheEcHHH
Confidence 875 1110 011 11 246677888887754799999999999999999999999999999999
Q ss_pred HH
Q 015722 347 PF 348 (402)
Q Consensus 347 l~ 348 (402)
+.
T Consensus 276 ~~ 277 (289)
T cd02810 276 MW 277 (289)
T ss_pred Hh
Confidence 86
No 57
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.76 E-value=1.1e-16 Score=165.77 Aligned_cols=143 Identities=26% Similarity=0.337 Sum_probs=116.0
Q ss_pred ccHHHHHHHHHcc-CccEEEEeccCHHHHHHHHHhCCcEEEEecCccc----CC--CCCcchHHHHHHHHHHhcC-CCeE
Q 015722 246 LNWKDVKWLQTIT-SLPILVKGVLTAEDASLAIQYGAAGIIVSNHGAR----QL--DYVPATVMALEEVVQAAKG-RVPV 317 (402)
Q Consensus 246 ~~~~~i~~lr~~~-~~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~----~~--d~~~~~~~~l~~i~~~~~~-~i~v 317 (402)
..++.++++|+.+ +.+|+...+.|.+.++.+.++|||+|.|.-..|. +. ..+.|.+.++.+++++... ++||
T Consensus 254 ~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~aGad~v~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~v 333 (479)
T PRK07807 254 KMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHV 333 (479)
T ss_pred HHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHHcCCCEEEECccCCcccccccccCCchhHHHHHHHHHHHHHhcCCcE
Confidence 3457799999988 6889888999999999999999999998643332 11 2367889999999886543 7999
Q ss_pred EEecCCCCHHHHHHHHHcCcCEEEEchHHHHh---------------------------hh-----------------cC
Q 015722 318 FLDGGVRRGTDVFKALALGASGVFVGRPVPFS---------------------------LA-----------------VD 353 (402)
Q Consensus 318 ia~GGI~~g~dv~kal~lGAd~V~iGr~~l~~---------------------------~~-----------------~~ 353 (402)
|++|||+++.|+.|+|++||++||+|+.|.-. +. ..
T Consensus 334 ia~ggi~~~~~~~~al~~ga~~v~~g~~~ag~~Espg~~~~~~~g~~~k~yrgmgs~~a~~~~~~~~~~~~~~~~~~~~e 413 (479)
T PRK07807 334 WADGGVRHPRDVALALAAGASNVMIGSWFAGTYESPGDLMRDRDGRPYKESFGMASARAVAARTAGDSAFDRARKALFEE 413 (479)
T ss_pred EecCCCCCHHHHHHHHHcCCCeeeccHhhccCccCCCceEeccCCeEEEEeeccccHHHHhcccCccchhhhcccCCCCC
Confidence 99999999999999999999999999977321 10 01
Q ss_pred ChHH-----------HHHHHHHHHHHHHHHHHHhCCCChhhhcccc
Q 015722 354 GEAG-----------VRKVLQMLRDEFELTMALSGCRSLKEITRNH 388 (402)
Q Consensus 354 G~~g-----------v~~~i~~l~~el~~~m~~~G~~~i~el~~~~ 388 (402)
|.+| +..++..|...|+..|.++|+.+|.||+...
T Consensus 414 Gv~~~~~~~~~~~g~~~~~~~~l~~glr~~~~y~g~~~i~~~~~~~ 459 (479)
T PRK07807 414 GISTSRMYLDPGRPGVEDLLDHITSGVRSSCTYAGARTLAEFHERA 459 (479)
T ss_pred CccceeeeccCCCCCHHHHHHHHHHHHHHHHhhcCcCcHHHHHhCC
Confidence 2112 7788999999999999999999999998763
No 58
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=99.75 E-value=4.6e-17 Score=154.29 Aligned_cols=189 Identities=15% Similarity=0.103 Sum_probs=134.9
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCeEEecCCcc----------------------CCHHHHh------hcCCCc
Q 015722 107 PIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWAT----------------------SSVEEVS------STGPGI 158 (402)
Q Consensus 107 Pi~iAPm~~~~~~~~~ge~ala~aa~~~G~~~~vs~~~~----------------------~s~eei~------~~~~~~ 158 (402)
|+++|||++.+ +.+++++..+.+...+++..+. .+.+.+. +..+.+
T Consensus 1 ~~~lApMag~t------d~~f~~~~~~~~g~~~~Gg~~~d~~~~~aa~~~~~~~~~ef~~~~~~~~~~~~~~~~~~~~~p 74 (233)
T cd02911 1 PVALASMAGIT------DGDFCRKRADHAGLVFLGGYNLDERTIEAARKLVKRGRKEFLPDDPLEFIEGEIKALKDSNVL 74 (233)
T ss_pred CceeeecCCCc------CHHHHHhhCccCCEEEEcccccCHHHHHHHHHHHhcCCccccccchHHHHHHHHHHhhccCCe
Confidence 89999999876 7789985444443345543221 1122121 112357
Q ss_pred eEEEEeecCChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHh
Q 015722 159 RFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYV 238 (402)
Q Consensus 159 ~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (402)
..+|++ ..|++.+.++++.+++. ++.|.||+.||.. ++... +.+..+
T Consensus 75 ~~vqi~-g~~~~~~~~aa~~~~~~-~~~ielN~gCP~~---------------~v~~~----------------g~G~~L 121 (233)
T cd02911 75 VGVNVR-SSSLEPLLNAAALVAKN-AAILEINAHCRQP---------------EMVEA----------------GAGEAL 121 (233)
T ss_pred EEEEec-CCCHHHHHHHHHHHhhc-CCEEEEECCCCcH---------------HHhcC----------------CcchHH
Confidence 889998 67889889999998875 6999999999963 01100 112233
Q ss_pred hhhcCCCccHHHHHHHHHccCccEEEEecc-----CHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcC
Q 015722 239 ANQIDRSLNWKDVKWLQTITSLPILVKGVL-----TAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKG 313 (402)
Q Consensus 239 ~~~~d~~~~~~~i~~lr~~~~~Pv~vK~~~-----~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~ 313 (402)
+ .+|+...+.++.+++ .++||.+|... +.+.++.+.++|+|+|.+++. . .+....++.+++++ +
T Consensus 122 l--~~p~~l~eiv~avr~-~~~pVsvKir~g~~~~~~~la~~l~~aG~d~ihv~~~--~--~g~~ad~~~I~~i~--~-- 190 (233)
T cd02911 122 L--KDPERLSEFIKALKE-TGVPVSVKIRAGVDVDDEELARLIEKAGADIIHVDAM--D--PGNHADLKKIRDIS--T-- 190 (233)
T ss_pred c--CCHHHHHHHHHHHHh-cCCCEEEEEcCCcCcCHHHHHHHHHHhCCCEEEECcC--C--CCCCCcHHHHHHhc--C--
Confidence 3 367677788999998 59999999863 345678899999999877532 1 12355677787775 3
Q ss_pred CCeEEEecCCCCHHHHHHHHHcCcCEEEEchH
Q 015722 314 RVPVFLDGGVRRGTDVFKALALGASGVFVGRP 345 (402)
Q Consensus 314 ~i~via~GGI~~g~dv~kal~lGAd~V~iGr~ 345 (402)
++|||++|||.+++|+.+++..|||+||+||+
T Consensus 191 ~ipVIgnGgI~s~eda~~~l~~GaD~VmiGR~ 222 (233)
T cd02911 191 ELFIIGNNSVTTIESAKEMFSYGADMVSVARA 222 (233)
T ss_pred CCEEEEECCcCCHHHHHHHHHcCCCEEEEcCC
Confidence 79999999999999999999999999999995
No 59
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=1.6e-16 Score=155.11 Aligned_cols=202 Identities=20% Similarity=0.231 Sum_probs=154.8
Q ss_pred ccCCce-eecccccccccCChhhHHHHHHHHHcCCeEEecCCccC-CH---HHHh----hcCC--CceEEEEeecCChhH
Q 015722 103 NISMPI-MIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATS-SV---EEVS----STGP--GIRFFQLYVTKHRNV 171 (402)
Q Consensus 103 ~l~~Pi-~iAPm~~~~~~~~~ge~ala~aa~~~G~~~~vs~~~~~-s~---eei~----~~~~--~~~~~QLy~~~d~~~ 171 (402)
+...|. ++|||-..+ ++++++.+++.|.-.+.+.|-.. +. +.-. ...+ .|+.+|+- .+|++.
T Consensus 15 ~~~~~~ri~APMvd~S------~l~fR~L~R~y~~~l~yTpMi~a~~fv~~ek~r~~~~st~~~D~PLIvQf~-~ndp~~ 87 (358)
T KOG2335|consen 15 KQGRPKRIVAPMVDYS------ELAFRRLVRLYGADLLYTPMIHAKTFVHSEKYRDSELSTSPEDRPLIVQFG-GNDPEN 87 (358)
T ss_pred hcCCcccccCCccccc------HHHHHHHHHHhCCceEechHHHHHHHhcCccchhhhcccCCCCCceEEEEc-CCCHHH
Confidence 334443 589997765 89999999999998888776211 10 1111 1122 78999986 789999
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCCccHHHH
Q 015722 172 DAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDV 251 (402)
Q Consensus 172 ~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i 251 (402)
+.++++.++..+ ++|.||++||.. .-.+.+ .+.+++ .++++.-+.|
T Consensus 88 ll~Aa~lv~~y~-D~idlNcGCPq~----~a~~g~---------------------------yGa~L~--~~~eLv~e~V 133 (358)
T KOG2335|consen 88 LLKAARLVQPYC-DGIDLNCGCPQK----VAKRGG---------------------------YGAFLM--DNPELVGEMV 133 (358)
T ss_pred HHHHHHHhhhhc-CcccccCCCCHH----HHhcCC---------------------------ccceec--cCHHHHHHHH
Confidence 999999988886 999999999942 000111 122333 2566777889
Q ss_pred HHHHHccCccEEEEec------cCHHHHHHHHHhCCcEEEEecCcccCC----CCCcchHHHHHHHHHHhcCCCeEEEec
Q 015722 252 KWLQTITSLPILVKGV------LTAEDASLAIQYGAAGIIVSNHGARQL----DYVPATVMALEEVVQAAKGRVPVFLDG 321 (402)
Q Consensus 252 ~~lr~~~~~Pv~vK~~------~~~~da~~a~~aGad~I~vsn~gg~~~----d~~~~~~~~l~~i~~~~~~~i~via~G 321 (402)
..+++.++.||.+|+. -|.+.++.+.++|++.++| ||.+.. ..++..++.+..|++.+++ +|||++|
T Consensus 134 ~~v~~~l~~pVs~KIRI~~d~~kTvd~ak~~e~aG~~~ltV--HGRtr~~kg~~~~pad~~~i~~v~~~~~~-ipviaNG 210 (358)
T KOG2335|consen 134 SAVRANLNVPVSVKIRIFVDLEKTVDYAKMLEDAGVSLLTV--HGRTREQKGLKTGPADWEAIKAVRENVPD-IPVIANG 210 (358)
T ss_pred HHHHhhcCCCeEEEEEecCcHHHHHHHHHHHHhCCCcEEEE--ecccHHhcCCCCCCcCHHHHHHHHHhCcC-CcEEeeC
Confidence 9999999999999986 3567799999999999999 776532 2567889999999999964 9999999
Q ss_pred CCCCHHHHHHHHH-cCcCEEEEchHHHH
Q 015722 322 GVRRGTDVFKALA-LGASGVFVGRPVPF 348 (402)
Q Consensus 322 GI~~g~dv~kal~-lGAd~V~iGr~~l~ 348 (402)
+|.+.+|+-.++. .|||+||+||.+++
T Consensus 211 nI~~~~d~~~~~~~tG~dGVM~arglL~ 238 (358)
T KOG2335|consen 211 NILSLEDVERCLKYTGADGVMSARGLLY 238 (358)
T ss_pred CcCcHHHHHHHHHHhCCceEEecchhhc
Confidence 9999999999999 99999999995544
No 60
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=99.72 E-value=7e-16 Score=157.12 Aligned_cols=263 Identities=21% Similarity=0.190 Sum_probs=179.1
Q ss_pred cccCCceeecccccccccCChhhHHHHHHHHHcCCeEEecCCccCCHHHHhhcCCCceEEEEeecCChhHHHHHHHHHHH
Q 015722 102 FNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAER 181 (402)
Q Consensus 102 ~~l~~Pi~iAPm~~~~~~~~~ge~ala~aa~~~G~~~~vs~~~~~s~eei~~~~~~~~~~QLy~~~d~~~~~~~l~ra~~ 181 (402)
..+..||.++.|+++.+ .++...++|+++.+.|..+-.++. ..+.+.. ........|+- ......+.+.+.
T Consensus 163 ~~i~~~~~~~aMS~GAl-S~eA~~alA~a~~~~G~~sntGEG-Ge~~~~~--~~~~s~I~Qva-SGRFGV~~~yL~---- 233 (485)
T COG0069 163 LELKKRFVTGAMSFGAL-SKEAHEALARAMNRIGTKSNTGEG-GEDPERY--EDGRSAIKQVA-SGRFGVTPEYLA---- 233 (485)
T ss_pred ceeeecccccccCCccc-cHHHHHHHHHHHHHhcCcccCCCC-CCCHHHh--ccccceEEEec-cccCccCHHHhC----
Confidence 66788999999999876 456788999999999987765554 4455444 11134577864 445555555443
Q ss_pred cCCcEEEEecCCCCCCchhHHHhhhcCCCC-ccccccccccccccCCCCCchhhHHHhhhhcCCC-ccHHH----HHHHH
Q 015722 182 AGFKAIALTVDTPRLGRREADIKNRFVLPP-HLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRS-LNWKD----VKWLQ 255 (402)
Q Consensus 182 ~G~~ai~itvd~p~~g~r~~d~r~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~----i~~lr 255 (402)
.+++|.|-+..-...- .+-++|. |++.. +..+.. .......+++..+.+ ++.++ |..||
T Consensus 234 -~a~~ieIKiaQGAKPG------eGG~Lpg~KV~~~-IA~~R~-------~~pG~~~ISP~pHHDiysieDLaqlI~dLk 298 (485)
T COG0069 234 -NADAIEIKIAQGAKPG------EGGQLPGEKVTPE-IAKTRG-------SPPGVGLISPPPHHDIYSIEDLAQLIKDLK 298 (485)
T ss_pred -ccceEEEEeccCCCCC------CCCCCCCccCCHH-HHHhcC-------CCCCCCCcCCCCcccccCHHHHHHHHHHHH
Confidence 4567777664322100 1223443 33221 000000 000011223222222 34443 66677
Q ss_pred Hcc-CccEEEEecc--CHHHHHH-HHHhCCcEEEEecC-cccC-------CCCCcchHHHHHHHHHHh-----cCCCeEE
Q 015722 256 TIT-SLPILVKGVL--TAEDASL-AIQYGAAGIIVSNH-GARQ-------LDYVPATVMALEEVVQAA-----KGRVPVF 318 (402)
Q Consensus 256 ~~~-~~Pv~vK~~~--~~~da~~-a~~aGad~I~vsn~-gg~~-------~d~~~~~~~~l~~i~~~~-----~~~i~vi 318 (402)
+.. ..||.||.+. ..+.+.. +.++|||.|+|++| |||. ...|.|....|+++.+.+ ++++.|+
T Consensus 299 ~~~~~~~I~VKlva~~~v~~iaagvakA~AD~I~IdG~~GGTGAsP~~~~~~~GiP~e~glae~~q~L~~~glRd~v~l~ 378 (485)
T COG0069 299 EANPWAKISVKLVAEHGVGTIAAGVAKAGADVITIDGADGGTGASPLTSIDHAGIPWELGLAETHQTLVLNGLRDKVKLI 378 (485)
T ss_pred hcCCCCeEEEEEecccchHHHHhhhhhccCCEEEEcCCCCcCCCCcHhHhhcCCchHHHHHHHHHHHHHHcCCcceeEEE
Confidence 765 3679999984 3455544 78999999999998 5553 235777777888888765 4689999
Q ss_pred EecCCCCHHHHHHHHHcCcCEEEEchHHHHhhhcC-----------------------------ChHHHHHHHHHHHHHH
Q 015722 319 LDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVD-----------------------------GEAGVRKVLQMLRDEF 369 (402)
Q Consensus 319 a~GGI~~g~dv~kal~lGAd~V~iGr~~l~~~~~~-----------------------------G~~gv~~~i~~l~~el 369 (402)
++||++|+.||+||++||||.|.+||+.+.++.|. .++.|.+++..+.+|+
T Consensus 379 ~~Ggl~Tg~DVaka~aLGAd~v~~gTa~lia~GCim~r~CH~~tCp~GIaTqdp~Lrkrl~~~~~~~~v~N~~~~~a~e~ 458 (485)
T COG0069 379 ADGGLRTGADVAKAAALGADAVGFGTAALVALGCIMCRVCHTGTCPVGIATQDPELRKRLDVEGKPERVINYFTFVAEEL 458 (485)
T ss_pred ecCCccCHHHHHHHHHhCcchhhhchHHHHHhhhHhhhhccCCCCCceeeecCHHHHhhcCccccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998887651 3578999999999999
Q ss_pred HHHHHHhCCCChhhhcccc
Q 015722 370 ELTMALSGCRSLKEITRNH 388 (402)
Q Consensus 370 ~~~m~~~G~~~i~el~~~~ 388 (402)
+++|+.+|.++++||.+..
T Consensus 459 rella~lG~~~l~el~g~~ 477 (485)
T COG0069 459 RELLAALGKRSLSELIGRT 477 (485)
T ss_pred HHHHHHhCCCCHHHHhcch
Confidence 9999999999999998653
No 61
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=99.71 E-value=2.7e-16 Score=154.02 Aligned_cols=224 Identities=22% Similarity=0.248 Sum_probs=137.0
Q ss_pred cceeecCcccCCceeecccccccccCChhhHHHHHHHHHcCCeEEec-CCccC---------------------------
Q 015722 95 MTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLS-SWATS--------------------------- 146 (402)
Q Consensus 95 ~st~i~G~~l~~Pi~iAPm~~~~~~~~~ge~ala~aa~~~G~~~~vs-~~~~~--------------------------- 146 (402)
|+|+++|.+++.||++|. |.. . +....+.+.++|..+++. +....
T Consensus 2 L~~~~~Gl~l~nPi~~as-G~~----~--~~~~~~~~~~~G~Gavv~ksvt~~~~~gn~~pr~~~~~~~~~~~n~~G~~n 74 (295)
T PF01180_consen 2 LSTNFCGLTLKNPIGLAS-GLD----K--NGEEIKRLFDAGFGAVVTKSVTPEPREGNPEPRIFRLPEGESILNSMGLPN 74 (295)
T ss_dssp G-EEETTEEESSSEEE-T-TSS----T--SSHHHHHHHHHSSSEEEEEEE-SSGB--SSSS-EEEETTETEEEE---S-B
T ss_pred ccEEECCEEcCCCcEECC-cCC----C--CchhhhhhhcCCccEEEeccccccccccccCCcEEeeccccccccccCCCh
Confidence 789999999999999975 222 1 223445666777666552 21100
Q ss_pred -CHH----HHhh---cC----CCceEEEEeecCC---hhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCC
Q 015722 147 -SVE----EVSS---TG----PGIRFFQLYVTKH---RNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPP 211 (402)
Q Consensus 147 -s~e----ei~~---~~----~~~~~~QLy~~~d---~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~ 211 (402)
.++ ++.+ .. +-+..+.+. ..+ .+...+.+++++ .|++++.+|+.||... .
T Consensus 75 ~g~~~~~~~~~~~~~~~~~~~~~pvi~Si~-~~~~~~~~d~~~~a~~~~-~~ad~lElN~ScPn~~-------------~ 139 (295)
T PF01180_consen 75 PGLEYYLERLRPILKEAKKDVDIPVIASIN-GDSEEEIEDWAELAKRLE-AGADALELNLSCPNVP-------------G 139 (295)
T ss_dssp SHHHHHHHHHHHTHHHTTCH-CEEEEEEE--TSSSGHHHHHHHHHHHHH-HHCSEEEEESTSTTST-------------T
T ss_pred HHHHHHHHHHHHHhhhcccccceeEEEEee-cCCchhHHHHHHHHHHhc-CcCCceEEEeeccCCC-------------C
Confidence 011 1111 11 112333332 223 344445555555 7788999988888531 0
Q ss_pred ccccccccccccccCCCCCchhhHHHhhhhcCCCccHHHHHHHHHccCccEEEEecc---CH---HHHHHHHHhCCcEEE
Q 015722 212 HLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVL---TA---EDASLAIQYGAAGII 285 (402)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~Pv~vK~~~---~~---~da~~a~~aGad~I~ 285 (402)
+. ... .++....+.++++++.+++||++|... .. +.+..+.+.|+|+|+
T Consensus 140 ~~-----------------------~~~--~~~~~~~~i~~~v~~~~~~Pv~vKL~p~~~~~~~~~~~~~~~~~g~~gi~ 194 (295)
T PF01180_consen 140 GR-----------------------PFG--QDPELVAEIVRAVREAVDIPVFVKLSPNFTDIEPFAIAAELAADGADGIV 194 (295)
T ss_dssp SG-----------------------GGG--GHHHHHHHHHHHHHHHHSSEEEEEE-STSSCHHHHHHHHHHHTHTECEEE
T ss_pred cc-----------------------ccc--cCHHHHHHHHHHHHhccCCCEEEEecCCCCchHHHHHHHHhhccceeEEE
Confidence 00 000 122234466788888889999999975 22 234555688999999
Q ss_pred EecCccc----------CC----CC---Cc----chHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEch
Q 015722 286 VSNHGAR----------QL----DY---VP----ATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGR 344 (402)
Q Consensus 286 vsn~gg~----------~~----d~---~~----~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr 344 (402)
+.|.-.. .. .+ |+ .++..+.++++.++.++|||++|||.|++|++++|.+||++|++++
T Consensus 195 ~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~i~p~aL~~V~~~~~~~~~~i~Iig~GGI~s~~da~e~l~aGA~~Vqv~S 274 (295)
T PF01180_consen 195 AINTFGQGDAIDLETRRPVLGNGFGGLSGPAIRPIALRWVRELRKALGQDIPIIGVGGIHSGEDAIEFLMAGASAVQVCS 274 (295)
T ss_dssp E---EEEEE-EETTTTEESSSGGEEEEEEGGGHHHHHHHHHHHHHHTTTSSEEEEESS--SHHHHHHHHHHTESEEEESH
T ss_pred EecCccCcccccchhcceeeccccCCcCchhhhhHHHHHHHHHHhccccceEEEEeCCcCCHHHHHHHHHhCCCHheech
Confidence 8775111 11 11 22 2456778888888667999999999999999999999999999999
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHHHHHHH
Q 015722 345 PVPFSLAVDGEAGVRKVLQMLRDEFELTM 373 (402)
Q Consensus 345 ~~l~~~~~~G~~gv~~~i~~l~~el~~~m 373 (402)
.+++. |+. +++.+.+||+.+|
T Consensus 275 al~~~----Gp~----~~~~i~~~L~~~l 295 (295)
T PF01180_consen 275 ALIYR----GPG----VIRRINRELEEWL 295 (295)
T ss_dssp HHHHH----GTT----HHHHHHHHHHHHH
T ss_pred hhhhc----CcH----HHHHHHHHHHhhC
Confidence 99873 443 6778888888876
No 62
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=99.71 E-value=4.5e-16 Score=174.53 Aligned_cols=311 Identities=17% Similarity=0.130 Sum_probs=197.2
Q ss_pred CChHHHHHHHhhhCCcccc-ccccCcccchhhHHHhHHhhhcccccccccC--CCCCCccceeecCcccCCceeeccccc
Q 015722 39 TNVMEYEALAKEKLPKMVY-DYYASGAEDQWTLQENRNAFSRILFRPRILR--DVSKIDMTTTVLGFNISMPIMIAPTAF 115 (402)
Q Consensus 39 ~~i~d~~~~A~~~l~~~~~-~y~~gGa~~e~t~~~N~~~~~~~~l~pr~l~--~~~~~d~st~i~G~~l~~Pi~iAPm~~ 115 (402)
.++..+++.++.. ....| .|-.-+... ....++++.+.|..+. +++++..-.+ +-.+|.++.|++
T Consensus 801 ~~i~~lq~a~~~g-~~~~y~~y~~~~~~~------~~~~lr~ll~~~~~~~~~p~~eve~v~~-----I~~rf~~~aMSf 868 (1485)
T PRK11750 801 DVVNTLQKAVQSG-DYSDYQEYAKLVNER------PVATLRDLLALKPADNPIPLDEVEPAEE-----LFKRFDSAAMSI 868 (1485)
T ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHhccC------CCCCHHHHhcccCCCCCCCccccccHHH-----HhcccccccCCC
Confidence 3567777777764 11111 122212111 1224666666664332 2333222111 344689999999
Q ss_pred ccccCChhhHHHHHHHHHcCCeEEecCCccCCHHHHhhcCCCceEEEEeecCChhHHHHHHHHHHHcCCcEEEEecCCCC
Q 015722 116 QKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPR 195 (402)
Q Consensus 116 ~~~~~~~ge~ala~aa~~~G~~~~vs~~~~~s~eei~~~~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~ 195 (402)
+.++ ++.-.++|+++.+.|+....++. ..+.++.... .....+|+- ......+.+.+. .+++|.|.+..-.
T Consensus 869 GalS-~eA~~aLA~a~~~~G~~sntGEG-G~~p~~~~~~-~~~~i~Qia-SGrFGv~~e~l~-----~a~~ieIKi~QGA 939 (1485)
T PRK11750 869 GALS-PEAHEALAIAMNRLGGRSNSGEG-GEDPARYGTE-KVSKIKQVA-SGRFGVTPAYLV-----NAEVLQIKVAQGA 939 (1485)
T ss_pred CccC-HHHHHHHHHHHHHhCCceecCCC-CCCHHHHhcc-cCCeEEEcc-CCcCCCCHHHhc-----cCCEEEEEecCCC
Confidence 8764 56788999999999998765554 5566655322 234578874 344555555554 3688888776433
Q ss_pred CCchhHHHhhhcCCCC-ccccccccccccccCCCCCchhhHHHhhhhcCCCc-cHHH----HHHHHHcc-CccEEEEecc
Q 015722 196 LGRREADIKNRFVLPP-HLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSL-NWKD----VKWLQTIT-SLPILVKGVL 268 (402)
Q Consensus 196 ~g~r~~d~r~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~----i~~lr~~~-~~Pv~vK~~~ 268 (402)
.+. .|-.+|. |++.. +..+ .........+++..+++. +.++ |.++|+.. +.||.||.+.
T Consensus 940 KPG------~GG~Lpg~KV~~~-IA~~-------R~~~~G~~liSP~phhdiySieDL~qlI~~Lk~~~~~~~I~VKl~a 1005 (1485)
T PRK11750 940 KPG------EGGQLPGDKVNPL-IARL-------RYSVPGVTLISPPPHHDIYSIEDLAQLIFDLKQVNPKALVSVKLVS 1005 (1485)
T ss_pred CCC------CCCcCccccCCHH-HHHH-------cCCCCCCCCCCCCCCccCCCHHHHHHHHHHHHHhCCCCcEEEEEcc
Confidence 100 1223442 33211 0000 000011122333233333 4443 66777776 5799999874
Q ss_pred C--HHH-HHHHHHhCCcEEEEecC-cccC------C-CCCcchHHHHHHHHHHh-----cCCCeEEEecCCCCHHHHHHH
Q 015722 269 T--AED-ASLAIQYGAAGIIVSNH-GARQ------L-DYVPATVMALEEVVQAA-----KGRVPVFLDGGVRRGTDVFKA 332 (402)
Q Consensus 269 ~--~~d-a~~a~~aGad~I~vsn~-gg~~------~-d~~~~~~~~l~~i~~~~-----~~~i~via~GGI~~g~dv~ka 332 (402)
. ..+ +.-+.++|+|.|++++| ||+. . +.|.|....|.++.+.+ ++++.++++||++|+.|++||
T Consensus 1006 ~~~vg~ia~gvaka~aD~I~IdG~~GGTGAap~~~~~~~GlP~e~gL~~~~~~L~~~glR~rv~l~a~Ggl~t~~Dv~kA 1085 (1485)
T PRK11750 1006 EPGVGTIATGVAKAYADLITISGYDGGTGASPLTSVKYAGSPWELGLAETHQALVANGLRHKIRLQVDGGLKTGLDVIKA 1085 (1485)
T ss_pred CCCccHHHhChhhcCCCEEEEeCCCCCcccccHHHHhhCCccHHHHHHHHHHHHHhcCCCcceEEEEcCCcCCHHHHHHH
Confidence 3 233 33567899999999998 4442 1 34666666788887765 468999999999999999999
Q ss_pred HHcCcCEEEEchHHHHhhhcC----------------------------ChHHHHHHHHHHHHHHHHHHHHhCCCChhhh
Q 015722 333 LALGASGVFVGRPVPFSLAVD----------------------------GEAGVRKVLQMLRDEFELTMALSGCRSLKEI 384 (402)
Q Consensus 333 l~lGAd~V~iGr~~l~~~~~~----------------------------G~~gv~~~i~~l~~el~~~m~~~G~~~i~el 384 (402)
++||||.|.+||++|.++.|. ..+.|.+++..+.+|++.+|..+|.++++|+
T Consensus 1086 ~aLGAd~~~~gt~~lialGCi~~r~Ch~~~CPvGiaTqd~~lr~~~~~~~~~~v~nf~~~~~~el~~~la~lG~~s~~el 1165 (1485)
T PRK11750 1086 AILGAESFGFGTGPMVALGCKYLRICHLNNCATGVATQDEKLRKNHYHGLPEMVMNYFEFIAEETREWMAQLGVRSLEDL 1165 (1485)
T ss_pred HHcCCcccccchHHHHHcCCHHHHhhcCCCCCcEEeccCHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHhCCCCHHHh
Confidence 999999999999999988761 1356899999999999999999999999999
No 63
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=99.70 E-value=1.1e-16 Score=157.39 Aligned_cols=306 Identities=22% Similarity=0.262 Sum_probs=194.7
Q ss_pred HHhhhccccccccc-CCCCCCccceeec-CcccCCceeecccccccccCChhhHHHHHHHHHcCCeEEecCCccCCHHHH
Q 015722 74 RNAFSRILFRPRIL-RDVSKIDMTTTVL-GFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEV 151 (402)
Q Consensus 74 ~~~~~~~~l~pr~l-~~~~~~d~st~i~-G~~l~~Pi~iAPm~~~~~~~~~ge~ala~aa~~~G~~~~vs~~~~~s~eei 151 (402)
...|+++.++|..+ ...+++||++.+- ..+++.|++.|||.-.+ |..||.+.+.+|....+. .++++|+.
T Consensus 29 ~LtynDfliLPg~idF~s~eVsL~t~ltr~itl~tPlvsSpMDTVt------es~MAiaMAl~ggIg~IH--hNctpe~Q 100 (503)
T KOG2550|consen 29 GLTYNDFLILPGFIDFASDEVSLQTKLTRNITLNTPLVSSPMDTVT------ESEMAIAMALLGGIGFIH--HNCTPEDQ 100 (503)
T ss_pred CccccceeecccccccccccceeehhhhhcccccCceeccCCcccc------hhHHHHHHHhcCCceeee--cCCCHHHH
Confidence 35799999999887 4566899999974 68899999999996654 778999999999887774 46777764
Q ss_pred hhcC----C--CceEEEEeecCChhHHHHHHHHHHHcCCcEEEEecCCCCCCc-------hhHHHhhh------------
Q 015722 152 SSTG----P--GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGR-------READIKNR------------ 206 (402)
Q Consensus 152 ~~~~----~--~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~-------r~~d~r~~------------ 206 (402)
+... . +.+.-+..+.......-+.++.-++.||..+-+|-|.-..++ |+-+....
T Consensus 101 A~~v~~vK~~~~g~~~~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~~~~~~~~~~vmt~~ 180 (503)
T KOG2550|consen 101 ADMVRRVKNYENGFINNPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFLEDNSLLVSDVMTKN 180 (503)
T ss_pred HHHHHHHHHhhcccccCCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhhhcccchhhhhcccc
Confidence 4321 1 111111111222333445555556678888887754332221 11111100
Q ss_pred -cCCCCcccccc---------------------cc------ccc---cccC-CC---------C-Cc-----hhhHHH--
Q 015722 207 -FVLPPHLTLKN---------------------YE------GLY---IGKM-DK---------T-DD-----SGLASY-- 237 (402)
Q Consensus 207 -~~~p~~~~~~~---------------------~~------~~~---~~~~-~~---------~-~~-----~~~~~~-- 237 (402)
+..|.++++.. +. ++. ..++ .+ + .+ ...-..
T Consensus 181 ~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~~~yPlask~~~kqll~gAaiGTre~dK~rl~ll~ 260 (503)
T KOG2550|consen 181 PVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKNRDYPLASKDSTKQLLCGAAIGTRDDDKERLDLLV 260 (503)
T ss_pred cccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhhcCCCccccCcccceeeeeccccccchhHHHHHhh
Confidence 00011111100 00 000 0000 00 0 00 000000
Q ss_pred ---------hhhhcCCCccHHHHHHHHHcc-CccEEEEeccCHHHHHHHHHhCCcEEEEecCccc----C--CCCCcchH
Q 015722 238 ---------VANQIDRSLNWKDVKWLQTIT-SLPILVKGVLTAEDASLAIQYGAAGIIVSNHGAR----Q--LDYVPATV 301 (402)
Q Consensus 238 ---------~~~~~d~~~~~~~i~~lr~~~-~~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~----~--~d~~~~~~ 301 (402)
-++++++.+..+.|+|+|+.. +++|+...+.|.+.|+.++++|||++.|.-..|. | ...|.+..
T Consensus 261 ~aGvdvviLDSSqGnS~~qiemik~iK~~yP~l~ViaGNVVT~~qa~nLI~aGaDgLrVGMGsGSiCiTqevma~GrpQ~ 340 (503)
T KOG2550|consen 261 QAGVDVVILDSSQGNSIYQLEMIKYIKETYPDLQIIAGNVVTKEQAANLIAAGADGLRVGMGSGSICITQKVMACGRPQG 340 (503)
T ss_pred hcCCcEEEEecCCCcchhHHHHHHHHHhhCCCceeeccceeeHHHHHHHHHccCceeEeccccCceeeeceeeeccCCcc
Confidence 112344556678899999998 4677777789999999999999999999644332 2 23456666
Q ss_pred HHHHHHHHHhc-CCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHH--------------------HHhhhc--------
Q 015722 302 MALEEVVQAAK-GRVPVFLDGGVRRGTDVFKALALGASGVFVGRPV--------------------PFSLAV-------- 352 (402)
Q Consensus 302 ~~l~~i~~~~~-~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~--------------------l~~~~~-------- 352 (402)
.++.++.+... -.+|||+||||++..++.|||.+||+.||+|.-+ ++++..
T Consensus 341 TAVy~va~~A~q~gvpviADGGiq~~Ghi~KAl~lGAstVMmG~lLAgtTEapGeyf~~~g~rlKkyrGMGSl~AM~~~s 420 (503)
T KOG2550|consen 341 TAVYKVAEFANQFGVPCIADGGIQNVGHVVKALGLGASTVMMGGLLAGTTEAPGEYFFRDGVRLKKYRGMGSLDAMESSS 420 (503)
T ss_pred cchhhHHHHHHhcCCceeecCCcCccchhHhhhhcCchhheecceeeeeeccCcceeeecCeeehhccCcchHHHHhhhh
Confidence 66666666442 3799999999999999999999999999999843 122110
Q ss_pred --------------CC-------hHHHHHHHHHHHHHHHHHHHHhCCCChhhhccc
Q 015722 353 --------------DG-------EAGVRKVLQMLRDEFELTMALSGCRSLKEITRN 387 (402)
Q Consensus 353 --------------~G-------~~gv~~~i~~l~~el~~~m~~~G~~~i~el~~~ 387 (402)
.| .-.+.+++..+...++..+...|++++++++..
T Consensus 421 ~~rY~~e~dkvkiAQGVsg~v~dKGsv~kfipyl~~giqh~cqdiGa~sL~~l~~~ 476 (503)
T KOG2550|consen 421 QKRYFSEVDKVKIAQGVSGSVQDKGSVQKFIPYLLAGIQHSCQDIGARSLKELREM 476 (503)
T ss_pred hhccccccceEeeccCcEEEeccCcchhhhHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 01 123788999999999999999999999999865
No 64
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=99.68 E-value=5.7e-15 Score=147.06 Aligned_cols=207 Identities=17% Similarity=0.219 Sum_probs=131.5
Q ss_pred cceeecCcccCCceeecccccccccCChhhHHHHHHHHHcCCeEEec-CCccC---------------------------
Q 015722 95 MTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLS-SWATS--------------------------- 146 (402)
Q Consensus 95 ~st~i~G~~l~~Pi~iAPm~~~~~~~~~ge~ala~aa~~~G~~~~vs-~~~~~--------------------------- 146 (402)
++|+++|.+++.||++|. |.. ++....+...++|..+++. |....
T Consensus 46 L~~~~~Gl~l~NPi~lAs-G~~------~~~~~~~~~~~~G~Gavv~kTvt~~p~~gn~~Pr~~~~~~~~~~iN~~Gl~n 118 (335)
T TIGR01036 46 LEVTVLGLKFPNPLGLAA-GFD------KDGEAIDALGAMGFGFLEIGTVTPKPQPGNPRPRLFRLIEDEALINRMGFNN 118 (335)
T ss_pred CcEEECCEECCCCcEeCC-ccC------CCHHHHHHHHhcCCCEEEeCCcCCCCCCCCCCCCEEECccccccccCCCCCC
Confidence 899999999999999954 221 2444666667778877662 22110
Q ss_pred -CHH----HHhhcC-CCceEEEEeecC------ChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccc
Q 015722 147 -SVE----EVSSTG-PGIRFFQLYVTK------HRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLT 214 (402)
Q Consensus 147 -s~e----ei~~~~-~~~~~~QLy~~~------d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~ 214 (402)
.++ ++.+.. ..+..+.+.... ..+...+.++++.+ .++++.+|+.||... +
T Consensus 119 ~G~~~~l~~i~~~~~~~~i~vsi~~~~~~~~~~~~~dy~~~~~~~~~-~ad~iElNlScPn~~--------------~-- 181 (335)
T TIGR01036 119 HGADVLVERLKRARYKGPIGINIGKNKDTPSEDAKEDYAACLRKLGP-LADYLVVNVSSPNTP--------------G-- 181 (335)
T ss_pred hhHHHHHHHHhhccCCCcEEEEEeCCCCCCcccCHHHHHHHHHHHhh-hCCEEEEEccCCCCC--------------C--
Confidence 011 111111 133444443221 22333444444433 278888888887521 0
Q ss_pred cccccccccccCCCCCchhhHHHhhhhcCCCccHHHHHHHHHccC-------ccEEEEeccC------HHHHHHHHHhCC
Q 015722 215 LKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITS-------LPILVKGVLT------AEDASLAIQYGA 281 (402)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~-------~Pv~vK~~~~------~~da~~a~~aGa 281 (402)
.+. ..+++...+.++++++.++ +||++|.... .+.++.+.++|+
T Consensus 182 ~~~-----------------------~~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ia~~~~~~Ga 238 (335)
T TIGR01036 182 LRD-----------------------LQYKAELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLTESDLEDIADSLVELGI 238 (335)
T ss_pred ccc-----------------------ccCHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHhCC
Confidence 000 0123334466777777665 9999999743 234677899999
Q ss_pred cEEEEecCcc-c--------C-CCC---Ccc----hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEch
Q 015722 282 AGIIVSNHGA-R--------Q-LDY---VPA----TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGR 344 (402)
Q Consensus 282 d~I~vsn~gg-~--------~-~d~---~~~----~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr 344 (402)
|+|++.|+-. + . ..+ |++ .+..+.++++.+++++|||+.|||.+++|+.+++.+||++|++||
T Consensus 239 dGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~ipiig~GGI~~~~da~e~l~aGA~~Vqv~t 318 (335)
T TIGR01036 239 DGVIATNTTVSRSLVQGPKNSDETGGLSGKPLQDKSTEIIRRLYAELQGRLPIIGVGGISSAQDALEKIRAGASLLQIYS 318 (335)
T ss_pred cEEEEECCCCccccccCccccCCCCcccCHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCcHHHhhH
Confidence 9999998521 0 0 112 222 445677777777668999999999999999999999999999999
Q ss_pred HHHH
Q 015722 345 PVPF 348 (402)
Q Consensus 345 ~~l~ 348 (402)
++++
T Consensus 319 a~~~ 322 (335)
T TIGR01036 319 GFIY 322 (335)
T ss_pred HHHH
Confidence 9986
No 65
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=99.67 E-value=1.3e-14 Score=142.86 Aligned_cols=184 Identities=21% Similarity=0.224 Sum_probs=130.1
Q ss_pred ecCcccCCceeecccccccccCChhhHHHHHHHHHcCCeEEecCCccCCHHHH-------hhcCCCceEEEEeecCChhH
Q 015722 99 VLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEV-------SSTGPGIRFFQLYVTKHRNV 171 (402)
Q Consensus 99 i~G~~l~~Pi~iAPm~~~~~~~~~ge~ala~aa~~~G~~~~vs~~~~~s~eei-------~~~~~~~~~~QLy~~~d~~~ 171 (402)
++| ++.||+.|||++.+ +..++.++.++|...+++.. ..+++++ .+....|+.+.+....+ .
T Consensus 7 ~lg--i~~Pii~apM~~~s------~~~la~avs~aGglG~l~~~-~~~~~~l~~~i~~~~~~t~~pfgvn~~~~~~--~ 75 (307)
T TIGR03151 7 LLG--IEYPIFQGGMAWVA------TGSLAAAVSNAGGLGIIGAG-NAPPDVVRKEIRKVKELTDKPFGVNIMLLSP--F 75 (307)
T ss_pred HhC--CCCCEEcCCCCCCC------CHHHHHHHHhCCCcceeccc-cCCHHHHHHHHHHHHHhcCCCcEEeeecCCC--C
Confidence 444 46899999998743 45799999999999888743 2344433 22233455555543211 1
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCCccHHHH
Q 015722 172 DAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDV 251 (402)
Q Consensus 172 ~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i 251 (402)
..+.++.+.+.|.+.+.++.. .| .+.+
T Consensus 76 ~~~~~~~~~~~~v~~v~~~~g--------------------------------------------------~p---~~~i 102 (307)
T TIGR03151 76 VDELVDLVIEEKVPVVTTGAG--------------------------------------------------NP---GKYI 102 (307)
T ss_pred HHHHHHHHHhCCCCEEEEcCC--------------------------------------------------Cc---HHHH
Confidence 234555555667666543211 11 1356
Q ss_pred HHHHHccCccEEEEeccCHHHHHHHHHhCCcEEEEecC--cccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHH
Q 015722 252 KWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNH--GARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDV 329 (402)
Q Consensus 252 ~~lr~~~~~Pv~vK~~~~~~da~~a~~aGad~I~vsn~--gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv 329 (402)
+++++. +++++. .+.+.++++.+.++|+|.|++.++ ||+. +..+++..++++++.+ ++|||++|||.+++|+
T Consensus 103 ~~lk~~-g~~v~~-~v~s~~~a~~a~~~GaD~Ivv~g~eagGh~--g~~~~~~ll~~v~~~~--~iPviaaGGI~~~~~~ 176 (307)
T TIGR03151 103 PRLKEN-GVKVIP-VVASVALAKRMEKAGADAVIAEGMESGGHI--GELTTMALVPQVVDAV--SIPVIAAGGIADGRGM 176 (307)
T ss_pred HHHHHc-CCEEEE-EcCCHHHHHHHHHcCCCEEEEECcccCCCC--CCCcHHHHHHHHHHHh--CCCEEEECCCCCHHHH
Confidence 777765 566654 668899999999999999999775 4432 2345789999999887 7999999999999999
Q ss_pred HHHHHcCcCEEEEchHHHHhhhc
Q 015722 330 FKALALGASGVFVGRPVPFSLAV 352 (402)
Q Consensus 330 ~kal~lGAd~V~iGr~~l~~~~~ 352 (402)
.+++++||++|++|+.|+....+
T Consensus 177 ~~al~~GA~gV~iGt~f~~t~Es 199 (307)
T TIGR03151 177 AAAFALGAEAVQMGTRFLCAKEC 199 (307)
T ss_pred HHHHHcCCCEeecchHHhccccc
Confidence 99999999999999999876443
No 66
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=99.63 E-value=6.3e-15 Score=138.94 Aligned_cols=153 Identities=14% Similarity=0.047 Sum_probs=117.4
Q ss_pred CceEEEEeecCChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHH
Q 015722 157 GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLAS 236 (402)
Q Consensus 157 ~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (402)
.+..+|+- ..+++...++++.+++ +++.|.||+.||+. ++... +.+.
T Consensus 68 ~~vivnv~-~~~~ee~~~~a~~v~~-~~d~IdiN~gCP~~---------------~v~~~----------------g~G~ 114 (231)
T TIGR00736 68 ALVSVNVR-FVDLEEAYDVLLTIAE-HADIIEINAHCRQP---------------EITEI----------------GIGQ 114 (231)
T ss_pred CCEEEEEe-cCCHHHHHHHHHHHhc-CCCEEEEECCCCcH---------------HHcCC----------------CCch
Confidence 57899997 5688888888888866 79999999999963 11100 1122
Q ss_pred HhhhhcCCCccHHHHHHHHHccCccEEEEecc------CHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHH
Q 015722 237 YVANQIDRSLNWKDVKWLQTITSLPILVKGVL------TAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQA 310 (402)
Q Consensus 237 ~~~~~~d~~~~~~~i~~lr~~~~~Pv~vK~~~------~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~ 310 (402)
.+. .+|+...+.++.+++ .++||+||... +.+.++.+.++|+|+|+| |.++.. .+...++.++++++.
T Consensus 115 ~Ll--~dp~~l~~iv~av~~-~~~PVsvKiR~~~~~~~~~~~a~~l~~aGad~i~V--d~~~~g-~~~a~~~~I~~i~~~ 188 (231)
T TIGR00736 115 ELL--KNKELLKEFLTKMKE-LNKPIFVKIRGNCIPLDELIDALNLVDDGFDGIHV--DAMYPG-KPYADMDLLKILSEE 188 (231)
T ss_pred hhc--CCHHHHHHHHHHHHc-CCCcEEEEeCCCCCcchHHHHHHHHHHcCCCEEEE--eeCCCC-CchhhHHHHHHHHHh
Confidence 232 367667788999985 58999999874 235688899999999999 433210 122679999999998
Q ss_pred hcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHHHh
Q 015722 311 AKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFS 349 (402)
Q Consensus 311 ~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~~ 349 (402)
++ .+|||++|||.+.+|+.+++..|||+||+||+.+.+
T Consensus 189 ~~-~ipIIgNGgI~s~eda~e~l~~GAd~VmvgR~~l~~ 226 (231)
T TIGR00736 189 FN-DKIIIGNNSIDDIESAKEMLKAGADFVSVARAILKG 226 (231)
T ss_pred cC-CCcEEEECCcCCHHHHHHHHHhCCCeEEEcHhhccC
Confidence 73 499999999999999999999999999999988753
No 67
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=99.63 E-value=7.5e-14 Score=138.97 Aligned_cols=198 Identities=22% Similarity=0.235 Sum_probs=114.3
Q ss_pred cCCceeecccccccccCChhhHHHHHHHHHcCCeEEecCCccCCHHHH-------hhcCCCceEEEEeecCChhHHH---
Q 015722 104 ISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEV-------SSTGPGIRFFQLYVTKHRNVDA--- 173 (402)
Q Consensus 104 l~~Pi~iAPm~~~~~~~~~ge~ala~aa~~~G~~~~vs~~~~~s~eei-------~~~~~~~~~~QLy~~~d~~~~~--- 173 (402)
++.||+.+||++.+ . -.|+.+.+++|...+++.. ..+.+++ ++..+.|+.+.+..........
T Consensus 10 i~~PIiqapM~~is--~----~~LaaAVs~aGglG~l~~~-~~~~~~l~~~i~~~~~~t~~pfgvnl~~~~~~~~~~~~~ 82 (330)
T PF03060_consen 10 IKYPIIQAPMGGIS--T----PELAAAVSNAGGLGFLGAG-GLTPEQLREEIRKIRALTDKPFGVNLFLPPPDPADEEDA 82 (330)
T ss_dssp -SSSEEE---TTTS--S----HHHHHHHHHTTSBEEEECT-TSSHHHHHHHHHHHHHH-SS-EEEEEETTSTTHHHH-HH
T ss_pred CCcCEEcCCCCCCC--h----HHHHHHHHhCCCEeecccc-ccChHHHHHHHHHHHhhccccccccccccCcccchhhhh
Confidence 47899999998843 3 4799999999999999843 3444433 3334456777776544333222
Q ss_pred -------HHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCC-CCccccccccccccccCCCCCchhhHHHhhhhcCCC
Q 015722 174 -------QLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVL-PPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRS 245 (402)
Q Consensus 174 -------~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 245 (402)
..++...+.+.. -+..+...+.. |.-+ ......|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~v------------------------~~~~G~p- 124 (330)
T PF03060_consen 83 WPKELGNAVLELCIEEGVP-------------FEEQLDVALEAKPDVV------------------------SFGFGLP- 124 (330)
T ss_dssp HHHHTHHHHHHHHHHTT-S-------------HHHHHHHHHHS--SEE------------------------EEESSSC-
T ss_pred hhhhhHHHHHHHHHHhCcc-------------cccccccccccceEEE------------------------Eeecccc-
Confidence 111122222222 00000000000 0000 0000112
Q ss_pred ccHHHHHHHHHccCccEEEEeccCHHHHHHHHHhCCcEEEEecC--cccCC-CCCcchHHHHHHHHHHhcCCCeEEEecC
Q 015722 246 LNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNH--GARQL-DYVPATVMALEEVVQAAKGRVPVFLDGG 322 (402)
Q Consensus 246 ~~~~~i~~lr~~~~~Pv~vK~~~~~~da~~a~~aGad~I~vsn~--gg~~~-d~~~~~~~~l~~i~~~~~~~i~via~GG 322 (402)
..+.++.+++. ++.++. .+.++++|+.+.++|+|+|++.+. ||+.. +.+ +++..++++++.+ ++|||+.||
T Consensus 125 -~~~~i~~l~~~-gi~v~~-~v~s~~~A~~a~~~G~D~iv~qG~eAGGH~g~~~~-~~~~L~~~v~~~~--~iPViaAGG 198 (330)
T PF03060_consen 125 -PPEVIERLHAA-GIKVIP-QVTSVREARKAAKAGADAIVAQGPEAGGHRGFEVG-STFSLLPQVRDAV--DIPVIAAGG 198 (330)
T ss_dssp --HHHHHHHHHT-T-EEEE-EESSHHHHHHHHHTT-SEEEEE-TTSSEE---SSG--HHHHHHHHHHH---SS-EEEESS
T ss_pred -hHHHHHHHHHc-CCcccc-ccCCHHHHHHhhhcCCCEEEEeccccCCCCCcccc-ceeeHHHHHhhhc--CCcEEEecC
Confidence 23557777664 666654 568999999999999999999875 56543 222 5788899999988 799999999
Q ss_pred CCCHHHHHHHHHcCcCEEEEchHHHHhhhc
Q 015722 323 VRRGTDVFKALALGASGVFVGRPVPFSLAV 352 (402)
Q Consensus 323 I~~g~dv~kal~lGAd~V~iGr~~l~~~~~ 352 (402)
|.++.++..+|++||++|++||.|+....+
T Consensus 199 I~dg~~iaaal~lGA~gV~~GTrFl~t~Es 228 (330)
T PF03060_consen 199 IADGRGIAAALALGADGVQMGTRFLATEES 228 (330)
T ss_dssp --SHHHHHHHHHCT-SEEEESHHHHTSTTS
T ss_pred cCCHHHHHHHHHcCCCEeecCCeEEecccc
Confidence 999999999999999999999999865443
No 68
>KOG1436 consensus Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=99.58 E-value=1.5e-13 Score=131.49 Aligned_cols=121 Identities=23% Similarity=0.384 Sum_probs=96.4
Q ss_pred CccEEEEeccCH-----HH-HHHHHHhCCcEEEEecCcc-c-----C-----CCC---Cc----chHHHHHHHHHHhcCC
Q 015722 259 SLPILVKGVLTA-----ED-ASLAIQYGAAGIIVSNHGA-R-----Q-----LDY---VP----ATVMALEEVVQAAKGR 314 (402)
Q Consensus 259 ~~Pv~vK~~~~~-----~d-a~~a~~aGad~I~vsn~gg-~-----~-----~d~---~~----~~~~~l~~i~~~~~~~ 314 (402)
+.|+.+|...+. +| +....+.+.|+++++|.-= | + ..+ |+ .+.+.++.+...++++
T Consensus 252 ~~pvl~kiapDL~~~el~dia~v~kk~~idg~IvsnttVsrp~~~~~~~~~~etGGLsG~plk~~st~~vR~mY~lt~g~ 331 (398)
T KOG1436|consen 252 KPPVLVKIAPDLSEKELKDIALVVKKLNIDGLIVSNTTVSRPKASLVNKLKEETGGLSGPPLKPISTNTVRAMYTLTRGK 331 (398)
T ss_pred CCceEEEeccchhHHHHHHHHHHHHHhCccceeecCceeecCccccccccccccCCCCCCccchhHHHHHHHHHHhccCC
Confidence 469999987432 23 4555789999999998521 1 0 011 22 2456788888888889
Q ss_pred CeEEEecCCCCHHHHHHHHHcCcCEEEEchHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHhCCCChhhhccc
Q 015722 315 VPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRN 387 (402)
Q Consensus 315 i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~~~~~~G~~gv~~~i~~l~~el~~~m~~~G~~~i~el~~~ 387 (402)
||||..|||.+|.|+.+.+.+||+.|++++++.|. |+ .+++.++.||...|...|..++.|+.+.
T Consensus 332 IpiIG~GGV~SG~DA~EkiraGASlvQlyTal~ye----Gp----~i~~kIk~El~~ll~~kG~t~v~d~iG~ 396 (398)
T KOG1436|consen 332 IPIIGCGGVSSGKDAYEKIRAGASLVQLYTALVYE----GP----AIIEKIKRELSALLKAKGFTSVDDAIGK 396 (398)
T ss_pred CceEeecCccccHhHHHHHhcCchHHHHHHHHhhc----Cc----hhHHHHHHHHHHHHHhcCCCcHHHhccC
Confidence 99999999999999999999999999999998762 44 3789999999999999999999999765
No 69
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.53 E-value=1.5e-12 Score=122.99 Aligned_cols=190 Identities=23% Similarity=0.257 Sum_probs=130.3
Q ss_pred CCceeecccccccccCChhhHHHHHHHHHcCCeEEecCCccCCHHH-------HhhcCCCceEEEEeecCChhHHHHHHH
Q 015722 105 SMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEE-------VSSTGPGIRFFQLYVTKHRNVDAQLVK 177 (402)
Q Consensus 105 ~~Pi~iAPm~~~~~~~~~ge~ala~aa~~~G~~~~vs~~~~~s~ee-------i~~~~~~~~~~QLy~~~d~~~~~~~l~ 177 (402)
..|+++|||.+.+ +..+++++.++|....++.. ..+.++ +.+..+.+..+++..........+.++
T Consensus 2 ~~pi~~a~m~g~~------~~~~~~~~~~~G~ig~i~~~-~~~~~~~~~~~~~i~~~~~~~~~v~~i~~~~~~~~~~~~~ 74 (236)
T cd04730 2 RYPIIQAPMAGVS------TPELAAAVSNAGGLGFIGAG-YLTPEALRAEIRKIRALTDKPFGVNLLVPSSNPDFEALLE 74 (236)
T ss_pred CCCEECCCCCCCC------CHHHHHHHHhCCCccccCCC-CCCHHHHHHHHHHHHHhcCCCeEEeEecCCCCcCHHHHHH
Confidence 4799999998764 56899999999875556432 223332 222222345577764321134567788
Q ss_pred HHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCCccHHHHHHHHHc
Q 015722 178 RAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTI 257 (402)
Q Consensus 178 ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~ 257 (402)
.+.++|++++.++.+. ..+.++++++
T Consensus 75 ~~~~~g~d~v~l~~~~-----------------------------------------------------~~~~~~~~~~- 100 (236)
T cd04730 75 VALEEGVPVVSFSFGP-----------------------------------------------------PAEVVERLKA- 100 (236)
T ss_pred HHHhCCCCEEEEcCCC-----------------------------------------------------CHHHHHHHHH-
Confidence 8889999998763210 1123344443
Q ss_pred cCccEEEEeccCHHHHHHHHHhCCcEEEEecC--cccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHc
Q 015722 258 TSLPILVKGVLTAEDASLAIQYGAAGIIVSNH--GARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALAL 335 (402)
Q Consensus 258 ~~~Pv~vK~~~~~~da~~a~~aGad~I~vsn~--gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~l 335 (402)
.+++++++ +.+.++++.+.+.|+|+|.+.+. ||.........++.+.++++.+ ++||++.|||++++|+.+++.+
T Consensus 101 ~~i~~i~~-v~~~~~~~~~~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~--~~Pvi~~GGI~~~~~v~~~l~~ 177 (236)
T cd04730 101 AGIKVIPT-VTSVEEARKAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAV--DIPVIAAGGIADGRGIAAALAL 177 (236)
T ss_pred cCCEEEEe-CCCHHHHHHHHHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHh--CCCEEEECCCCCHHHHHHHHHc
Confidence 35677654 46778899999999999998653 1221111134577888888776 7999999999999999999999
Q ss_pred CcCEEEEchHHHHhhhcCChHHH
Q 015722 336 GASGVFVGRPVPFSLAVDGEAGV 358 (402)
Q Consensus 336 GAd~V~iGr~~l~~~~~~G~~gv 358 (402)
|||+|++|+.++....+.+...+
T Consensus 178 GadgV~vgS~l~~~~e~~~~~~~ 200 (236)
T cd04730 178 GADGVQMGTRFLATEESGASPAY 200 (236)
T ss_pred CCcEEEEchhhhcCcccCCCHHH
Confidence 99999999999987766555433
No 70
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=99.46 E-value=1.9e-12 Score=128.77 Aligned_cols=101 Identities=30% Similarity=0.409 Sum_probs=82.9
Q ss_pred HHHHHHHHHccCccEEEEeccCHHHHHHHHHhCCcEEEEecC--cccCC--CCCcchHHHHHHHHHHhcCC-CeEEEecC
Q 015722 248 WKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNH--GARQL--DYVPATVMALEEVVQAAKGR-VPVFLDGG 322 (402)
Q Consensus 248 ~~~i~~lr~~~~~Pv~vK~~~~~~da~~a~~aGad~I~vsn~--gg~~~--d~~~~~~~~l~~i~~~~~~~-i~via~GG 322 (402)
.+.++.+++ .+..++. .+.++..|+++.++|+|+|++.+. ||+.- +..+++..++++|++.+ + +|||+.||
T Consensus 117 ~~~i~~~~~-~g~~v~~-~v~~~~~A~~~~~~G~d~vI~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~~--~~iPViAAGG 192 (336)
T COG2070 117 AEFVARLKA-AGIKVIH-SVITVREALKAERAGADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDAV--DGIPVIAAGG 192 (336)
T ss_pred HHHHHHHHH-cCCeEEE-EeCCHHHHHHHHhCCCCEEEecCCcCCCcCCCCCCCccHHHHHHHHHHHh--cCCCEEEecC
Confidence 366777777 4555554 457899999999999999999754 44422 33667789999999998 5 99999999
Q ss_pred CCCHHHHHHHHHcCcCEEEEchHHHHhhhc
Q 015722 323 VRRGTDVFKALALGASGVFVGRPVPFSLAV 352 (402)
Q Consensus 323 I~~g~dv~kal~lGAd~V~iGr~~l~~~~~ 352 (402)
|.++.++..||++||++|++||.|+....|
T Consensus 193 I~dg~~i~AAlalGA~gVq~GT~Fl~t~Ea 222 (336)
T COG2070 193 IADGRGIAAALALGADGVQMGTRFLATKEA 222 (336)
T ss_pred ccChHHHHHHHHhccHHHHhhhhhhccccc
Confidence 999999999999999999999999876544
No 71
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=99.44 E-value=4.3e-12 Score=126.63 Aligned_cols=225 Identities=18% Similarity=0.147 Sum_probs=142.3
Q ss_pred ceeecCcccCCceeeccccccccc----CC-hhhHHHHHHHHHcCCeEEecCCccC--------------CH------HH
Q 015722 96 TTTVLGFNISMPIMIAPTAFQKMA----HP-EGECATARAASAAGTIMTLSSWATS--------------SV------EE 150 (402)
Q Consensus 96 st~i~G~~l~~Pi~iAPm~~~~~~----~~-~ge~ala~aa~~~G~~~~vs~~~~~--------------s~------ee 150 (402)
..+|.+.++++-|+.|||....-. .+ +..+..-+.-++-|+.+++++.... +. .+
T Consensus 6 P~~ig~~~lkNRiv~apm~~~~~~~~~G~~t~~~~~~y~~rA~gG~GlIi~~~~~v~~~~~~~~~~~~~~~d~~i~~~r~ 85 (337)
T PRK13523 6 PYTIKDVTLKNRIVMSPMCMYSSENKDGKVTNFHLIHYGTRAAGQVGLVIVEATAVLPEGRISDKDLGIWDDEHIEGLHK 85 (337)
T ss_pred CeeECCEeeecccEecccccccccCCCCCCCHHHHHHHHHHHcCCCeEEEECCeEECccccCCCCceecCCHHHHHHHHH
Confidence 356788999999999999532211 11 2245666666667888877653211 11 11
Q ss_pred Hhhc---CCCceEEEEeecCC---------------------------h-------hHHHHHHHHHHHcCCcEEEEecCC
Q 015722 151 VSST---GPGIRFFQLYVTKH---------------------------R-------NVDAQLVKRAERAGFKAIALTVDT 193 (402)
Q Consensus 151 i~~~---~~~~~~~QLy~~~d---------------------------~-------~~~~~~l~ra~~~G~~ai~itvd~ 193 (402)
+.+. .....++||+.... . +...+.+++++++||++|.|+..+
T Consensus 86 l~d~vh~~G~~i~~QL~H~G~~~~~~~~~~~ps~~~~~~~~~~p~~mt~eeI~~ii~~f~~aA~~a~~aGfDgVeih~ah 165 (337)
T PRK13523 86 LVTFIHDHGAKAAIQLAHAGRKAELEGDIVAPSAIPFDEKSKTPVEMTKEQIKETVLAFKQAAVRAKEAGFDVIEIHGAH 165 (337)
T ss_pred HHHHHHhcCCEEEEEccCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccc
Confidence 2221 22456889854211 0 122344567788999999999875
Q ss_pred CCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCCccHHHHHHHHHccCccEEEEecc-----
Q 015722 194 PRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVL----- 268 (402)
Q Consensus 194 p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~Pv~vK~~~----- 268 (402)
-+ +.+.|-.|. .+.+ ++.-| +. +. ....+..+.|+.+|+.++.||.+|...
T Consensus 166 Gy-------Ll~qFlSp~-~N~R------------tD~yG-Gs-le--nR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~ 221 (337)
T PRK13523 166 GY-------LINEFLSPL-SNKR------------TDEYG-GS-PE--NRYRFLREIIDAVKEVWDGPLFVRISASDYHP 221 (337)
T ss_pred ch-------HHHHhcCCc-cCCc------------CCCCC-CC-HH--HHHHHHHHHHHHHHHhcCCCeEEEecccccCC
Confidence 32 223442221 0111 01001 11 11 123466789999999999999999863
Q ss_pred ---CHHH----HHHHHHhCCcEEEEecCcccCC----CC-CcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcC
Q 015722 269 ---TAED----ASLAIQYGAAGIIVSNHGARQL----DY-VPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALG 336 (402)
Q Consensus 269 ---~~~d----a~~a~~aGad~I~vsn~gg~~~----d~-~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lG 336 (402)
+.++ ++.+.++|+|.|.|+. |+.. .. ....++...++++.+ ++||+++|+|++++++.++|+.|
T Consensus 222 ~G~~~~e~~~i~~~l~~~gvD~i~vs~--g~~~~~~~~~~~~~~~~~~~~ik~~~--~ipVi~~G~i~~~~~a~~~l~~g 297 (337)
T PRK13523 222 GGLTVQDYVQYAKWMKEQGVDLIDVSS--GAVVPARIDVYPGYQVPFAEHIREHA--NIATGAVGLITSGAQAEEILQNN 297 (337)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeCC--CCCCCCCCCCCccccHHHHHHHHhhc--CCcEEEeCCCCCHHHHHHHHHcC
Confidence 4544 4677889999999964 3311 11 111456677787776 79999999999999999999987
Q ss_pred -cCEEEEchHHHH
Q 015722 337 -ASGVFVGRPVPF 348 (402)
Q Consensus 337 -Ad~V~iGr~~l~ 348 (402)
||+|++||+++.
T Consensus 298 ~~D~V~~gR~~ia 310 (337)
T PRK13523 298 RADLIFIGRELLR 310 (337)
T ss_pred CCChHHhhHHHHh
Confidence 999999999985
No 72
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.42 E-value=1.4e-11 Score=121.01 Aligned_cols=182 Identities=15% Similarity=0.156 Sum_probs=122.1
Q ss_pred CCceeecccccccccCChhhHHHHHHHHHcCCeEEecCCccCCHHHHh-------hc-CCCceEEEEeecCChhHHHHHH
Q 015722 105 SMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVS-------ST-GPGIRFFQLYVTKHRNVDAQLV 176 (402)
Q Consensus 105 ~~Pi~iAPm~~~~~~~~~ge~ala~aa~~~G~~~~vs~~~~~s~eei~-------~~-~~~~~~~QLy~~~d~~~~~~~l 176 (402)
+.||+.+||++.+ + .-.|+.+.+++|...+++.. ..+.+++. +. ...|+.+.|-...+.....+.+
T Consensus 2 ~yPIiqgpM~~vs--~---~~~LaaAVS~AGgLG~la~~-~~~~e~l~~~i~~~~~l~tdkPfGVnl~~~~~~~~~~~~l 75 (320)
T cd04743 2 RYPIVQGPMTRVS--D---VAEFAVAVAEGGGLPFIALA-LMRGEQVKALLEETAELLGDKPWGVGILGFVDTELRAAQL 75 (320)
T ss_pred CCCEECCCcCCCC--C---cHHHHHHHHhCCccccCCCC-CCCHHHHHHHHHHHHHhccCCCeEEEEeccCCCcchHHHH
Confidence 5799999998754 1 14799999999998887643 33444322 21 2345555553222222334455
Q ss_pred HHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCCccHHHHHHHHH
Q 015722 177 KRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQT 256 (402)
Q Consensus 177 ~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~ 256 (402)
+.+.+.+.+.+.++.+ .|. + ++++++
T Consensus 76 ~vi~e~~v~~V~~~~G--------------------------------------------------~P~---~-~~~lk~ 101 (320)
T cd04743 76 AVVRAIKPTFALIAGG--------------------------------------------------RPD---Q-ARALEA 101 (320)
T ss_pred HHHHhcCCcEEEEcCC--------------------------------------------------ChH---H-HHHHHH
Confidence 5555566655443211 121 2 456655
Q ss_pred ccCccEEEEeccCHHHHHHHHHhCCcEEEEecC--cccCCCCCcchHHHHHHHHHHhc--------CCCeEEEecCCCCH
Q 015722 257 ITSLPILVKGVLTAEDASLAIQYGAAGIIVSNH--GARQLDYVPATVMALEEVVQAAK--------GRVPVFLDGGVRRG 326 (402)
Q Consensus 257 ~~~~Pv~vK~~~~~~da~~a~~aGad~I~vsn~--gg~~~d~~~~~~~~l~~i~~~~~--------~~i~via~GGI~~g 326 (402)
.+++++ -.+.+++.+++++++|+|+|++.++ ||+. +..+++..++++.+.+. .++|||+.|||.++
T Consensus 102 -~Gi~v~-~~v~s~~~A~~a~~~GaD~vVaqG~EAGGH~--G~~~t~~L~~~v~~~l~~~~~~~~~~~iPViAAGGI~dg 177 (320)
T cd04743 102 -IGISTY-LHVPSPGLLKQFLENGARKFIFEGRECGGHV--GPRSSFVLWESAIDALLAANGPDKAGKIHLLFAGGIHDE 177 (320)
T ss_pred -CCCEEE-EEeCCHHHHHHHHHcCCCEEEEecCcCcCCC--CCCCchhhHHHHHHHHHHhhcccccCCccEEEEcCCCCH
Confidence 366665 3568999999999999999999876 5543 23455556666665542 26999999999999
Q ss_pred HHHHHHHHcCc--------CEEEEchHHHHhh
Q 015722 327 TDVFKALALGA--------SGVFVGRPVPFSL 350 (402)
Q Consensus 327 ~dv~kal~lGA--------d~V~iGr~~l~~~ 350 (402)
..+..++++|| ++|++||.|+..-
T Consensus 178 r~~aaalaLGA~~~~~Ga~~GV~mGTrFl~t~ 209 (320)
T cd04743 178 RSAAMVSALAAPLAERGAKVGVLMGTAYLFTE 209 (320)
T ss_pred HHHHHHHHcCCcccccccccEEEEccHHhcch
Confidence 99999999999 8999999998754
No 73
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.39 E-value=6.2e-11 Score=120.35 Aligned_cols=219 Identities=19% Similarity=0.190 Sum_probs=131.7
Q ss_pred cCCceeecccccccccCChhhHHHHHHHHHcCCeEEecCCccCCHHHHh-------hc-C-CCceEEEEeec-CChhHHH
Q 015722 104 ISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVS-------ST-G-PGIRFFQLYVT-KHRNVDA 173 (402)
Q Consensus 104 l~~Pi~iAPm~~~~~~~~~ge~ala~aa~~~G~~~~vs~~~~~s~eei~-------~~-~-~~~~~~QLy~~-~d~~~~~ 173 (402)
++.|++.+||+.+ +. ..+|+.+..++|....++.. ..+++++. +. . ..|+.+.|+.. .+++...
T Consensus 12 iryPii~gpMa~G-is----s~eLVaAvs~AGgLG~lgag-~l~~e~l~~~I~~ir~~lt~~~PfGVNL~~~~~~~~~e~ 85 (418)
T cd04742 12 LRYAYVAGAMARG-IA----SAELVVAMGKAGMLGFFGAG-GLPLDEVEQAIERIQAALGNGEPYGVNLIHSPDEPELEE 85 (418)
T ss_pred CCccEECCcccCC-CC----CHHHHHHHHhCCCeeeecCC-CCCHHHHHHHHHHHHHhccCCCCeEEeeecCCCCchhHH
Confidence 4789999999832 23 44799999999999988754 34555543 22 3 46788888753 3444456
Q ss_pred HHHHHHHHcCCcEEEEe--cC-CCCCCchhHHHhhhcCC-CCc-cccccccccccccCCCCCchhhHHHhhhhcCCCccH
Q 015722 174 QLVKRAERAGFKAIALT--VD-TPRLGRREADIKNRFVL-PPH-LTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNW 248 (402)
Q Consensus 174 ~~l~ra~~~G~~ai~it--vd-~p~~g~r~~d~r~~~~~-p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 248 (402)
+.++.+.+.|.+.+... ++ .|.. .+.++ .|+.. +.+ +...+. + +.+ . +..+..+....| ..-
T Consensus 86 ~~v~l~le~gV~~ve~sa~~~~~p~~-~~~r~--~G~~~~~~g~~~~~~~--V----iak--V-sr~evAs~~f~p-pp~ 152 (418)
T cd04742 86 GLVDLFLRHGVRVVEASAFMQLTPAL-VRYRA--KGLRRDADGRVQIANR--I----IAK--V-SRPEVAEAFMSP-APE 152 (418)
T ss_pred HHHHHHHHcCCCEEEeccccCCCcch-hhHHh--cCCcccccccccccce--E----EEe--c-CChhhhhhhcCC-CCH
Confidence 67888888999876543 11 1111 11111 11100 000 000000 0 000 0 000011111111 244
Q ss_pred HHHHHHHHccCccEEEEeccCHHHHHHHHHhC-CcEEEEecC-cccCCCCCcchHHHHHHHHH---Hhc------CCCeE
Q 015722 249 KDVKWLQTITSLPILVKGVLTAEDASLAIQYG-AAGIIVSNH-GARQLDYVPATVMALEEVVQ---AAK------GRVPV 317 (402)
Q Consensus 249 ~~i~~lr~~~~~Pv~vK~~~~~~da~~a~~aG-ad~I~vsn~-gg~~~d~~~~~~~~l~~i~~---~~~------~~i~v 317 (402)
+.++++.+. |+.|.++|+.+.+.| +|.|++..- ||+. +..+++..++.+.+ .+. .++||
T Consensus 153 ~~v~~L~~~--------G~it~~eA~~A~~~g~aD~Ivvq~EAGGH~--g~~~~~~Llp~v~~l~d~v~~~~~~~~~ipV 222 (418)
T cd04742 153 RILKKLLAE--------GKITEEQAELARRVPVADDITVEADSGGHT--DNRPLSVLLPTIIRLRDELAARYGYRRPIRV 222 (418)
T ss_pred HHHHHHHHc--------CCCCHHHHHHHHhCCCCCEEEEcccCCCCC--CCccHHhHHHHHHHHHHHHhhccccCCCceE
Confidence 678888774 333999999999999 599998632 5543 22344455555543 331 26999
Q ss_pred EEecCCCCHHHHHHHHHcCcCEEEEchHHHHhhh
Q 015722 318 FLDGGVRRGTDVFKALALGASGVFVGRPVPFSLA 351 (402)
Q Consensus 318 ia~GGI~~g~dv~kal~lGAd~V~iGr~~l~~~~ 351 (402)
++.|||.|+.++..++++||++|++||.|+....
T Consensus 223 iAAGGI~tg~~vaAA~alGAd~V~~GT~flat~E 256 (418)
T cd04742 223 GAAGGIGTPEAAAAAFALGADFIVTGSINQCTVE 256 (418)
T ss_pred EEECCCCCHHHHHHHHHcCCcEEeeccHHHhCcc
Confidence 9999999999999999999999999999986543
No 74
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.34 E-value=2.8e-11 Score=120.06 Aligned_cols=150 Identities=23% Similarity=0.248 Sum_probs=102.8
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCCccHHHHH
Q 015722 173 AQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVK 252 (402)
Q Consensus 173 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~ 252 (402)
.+.+++++++||++|.|+..+.+ +...|-.|. .+.+ .+.-| +. +. ....+..+.++
T Consensus 144 ~~aA~~a~~aGfDgveih~~~gy-------L~~qFlsp~-~n~R------------~d~yG-gs-~e--nr~r~~~eii~ 199 (327)
T cd02803 144 AAAARRAKEAGFDGVEIHGAHGY-------LLSQFLSPY-TNKR------------TDEYG-GS-LE--NRARFLLEIVA 199 (327)
T ss_pred HHHHHHHHHcCCCEEEEcchhhh-------HHHHhcCcc-ccCC------------CcccC-CC-HH--HHHHHHHHHHH
Confidence 34456777899999999987654 233443231 1111 00000 01 11 12345678899
Q ss_pred HHHHcc--CccEEEEecc--------CHHH----HHHHHHhCCcEEEEecCcccCCCC--------CcchHHHHHHHHHH
Q 015722 253 WLQTIT--SLPILVKGVL--------TAED----ASLAIQYGAAGIIVSNHGARQLDY--------VPATVMALEEVVQA 310 (402)
Q Consensus 253 ~lr~~~--~~Pv~vK~~~--------~~~d----a~~a~~aGad~I~vsn~gg~~~d~--------~~~~~~~l~~i~~~ 310 (402)
.+|+.+ +.||.+|... +.++ ++.+.++|+|+|.+++....+... ....++.+..+++.
T Consensus 200 avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~ 279 (327)
T cd02803 200 AVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKA 279 (327)
T ss_pred HHHHHcCCCceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHH
Confidence 999998 6899999862 3444 677889999999997543221111 12345677888887
Q ss_pred hcCCCeEEEecCCCCHHHHHHHHHc-CcCEEEEchHHHH
Q 015722 311 AKGRVPVFLDGGVRRGTDVFKALAL-GASGVFVGRPVPF 348 (402)
Q Consensus 311 ~~~~i~via~GGI~~g~dv~kal~l-GAd~V~iGr~~l~ 348 (402)
+ ++||+++|||++.+++.++|.. |||.|++||+++.
T Consensus 280 ~--~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~igR~~la 316 (327)
T cd02803 280 V--KIPVIAVGGIRDPEVAEEILAEGKADLVALGRALLA 316 (327)
T ss_pred C--CCCEEEeCCCCCHHHHHHHHHCCCCCeeeecHHHHh
Confidence 7 7999999999999999999998 7999999999986
No 75
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=99.33 E-value=1.1e-10 Score=105.35 Aligned_cols=185 Identities=23% Similarity=0.215 Sum_probs=121.8
Q ss_pred eeecccccccccCChhhHHHHHHHHHcCCeEEecCC-ccC-------C---HHHHhhcCCCceEEEEeecCChhHHHHHH
Q 015722 108 IMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSW-ATS-------S---VEEVSSTGPGIRFFQLYVTKHRNVDAQLV 176 (402)
Q Consensus 108 i~iAPm~~~~~~~~~ge~ala~aa~~~G~~~~vs~~-~~~-------s---~eei~~~~~~~~~~QLy~~~d~~~~~~~l 176 (402)
|++++|.++.. +....+++.+.+.|+.++.... ... . ++.+......+..+|++.....+......
T Consensus 1 ~~~~~~~~~~~---~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 77 (200)
T cd04722 1 VILALLAGGPS---GDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAA 77 (200)
T ss_pred CeeeccccCch---HHHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEEEccCCchhhhhHHH
Confidence 45677765431 2356889999998876544222 111 1 33344444467889998654444444445
Q ss_pred HHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCCccHHHHHHHHH
Q 015722 177 KRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQT 256 (402)
Q Consensus 177 ~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~ 256 (402)
++++++|++.+.|+..++.. +....+.++++++
T Consensus 78 ~~~~~~g~d~v~l~~~~~~~-----------------------------------------------~~~~~~~~~~i~~ 110 (200)
T cd04722 78 AAARAAGADGVEIHGAVGYL-----------------------------------------------AREDLELIRELRE 110 (200)
T ss_pred HHHHHcCCCEEEEeccCCcH-----------------------------------------------HHHHHHHHHHHHH
Confidence 78889999999987765421 1124567888888
Q ss_pred cc-CccEEEEeccCHHHHHH-HHHhCCcEEEEecCcccCCCCCcc--hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHH
Q 015722 257 IT-SLPILVKGVLTAEDASL-AIQYGAAGIIVSNHGARQLDYVPA--TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKA 332 (402)
Q Consensus 257 ~~-~~Pv~vK~~~~~~da~~-a~~aGad~I~vsn~gg~~~d~~~~--~~~~l~~i~~~~~~~i~via~GGI~~g~dv~ka 332 (402)
.+ +.|+++|.....+.... +.+.|+|.|.++++.+.+...... ....+..+... .++||+++|||.+++++.++
T Consensus 111 ~~~~~~v~~~~~~~~~~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~pi~~~GGi~~~~~~~~~ 188 (200)
T cd04722 111 AVPDVKVVVKLSPTGELAAAAAEEAGVDEVGLGNGGGGGGGRDAVPIADLLLILAKRG--SKVPVIAGGGINDPEDAAEA 188 (200)
T ss_pred hcCCceEEEEECCCCccchhhHHHcCCCEEEEcCCcCCCCCccCchhHHHHHHHHHhc--CCCCEEEECCCCCHHHHHHH
Confidence 87 79999997643322222 688999999998764433222221 12334444433 37999999999999999999
Q ss_pred HHcCcCEEEEch
Q 015722 333 LALGASGVFVGR 344 (402)
Q Consensus 333 l~lGAd~V~iGr 344 (402)
+.+|||+|++||
T Consensus 189 ~~~Gad~v~vgs 200 (200)
T cd04722 189 LALGADGVIVGS 200 (200)
T ss_pred HHhCCCEEEecC
Confidence 999999999997
No 76
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=99.30 E-value=5.8e-10 Score=114.03 Aligned_cols=220 Identities=19% Similarity=0.190 Sum_probs=131.1
Q ss_pred cCCceeecccccccccCChhhHHHHHHHHHcCCeEEecCCccCCHHHHhh-------cCC-Cc-eEEEEeecC-ChhHHH
Q 015722 104 ISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSS-------TGP-GI-RFFQLYVTK-HRNVDA 173 (402)
Q Consensus 104 l~~Pi~iAPm~~~~~~~~~ge~ala~aa~~~G~~~~vs~~~~~s~eei~~-------~~~-~~-~~~QLy~~~-d~~~~~ 173 (402)
+..|++.+||+++ +. ...|+.+..++|....++.. ..+++++.+ ..+ ++ +.+.|+... +++...
T Consensus 17 iryPiiqgpMa~G-iS----s~eLVaAVs~AGgLG~lgag-~l~~e~l~~~I~~ir~~~~~~p~fGVNL~~~~~~~~~e~ 90 (444)
T TIGR02814 17 VRYAYVAGAMANG-IA----SAELVIAMGRAGILGFFGAG-GLPLEEVEQAIHRIQQALPGGPAYGVNLIHSPSDPALEW 90 (444)
T ss_pred CCCcEECccccCC-CC----CHHHHHHHHhCCceeeeCCC-CCCHHHHHHHHHHHHHhcCCCCceEEEecccCCCcccHH
Confidence 4789999999832 23 44799999999999988754 355665432 223 35 788887543 333334
Q ss_pred HHHHHHHHcCCcEEEEec--C-CCCCCchhHHHhhhcCCC--CccccccccccccccCCCCCchhhHHHhhhhcCCCccH
Q 015722 174 QLVKRAERAGFKAIALTV--D-TPRLGRREADIKNRFVLP--PHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNW 248 (402)
Q Consensus 174 ~~l~ra~~~G~~ai~itv--d-~p~~g~r~~d~r~~~~~p--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 248 (402)
++++.+.+.|.+.+...- + +|.. .+.+. .++... .++...+. .+.+ . +..+.......|. .-
T Consensus 91 ~~v~l~l~~~V~~veasa~~~~~p~~-v~~r~--~G~~~~~~g~~~~~~~------Viak--V-sr~~vAs~f~~p~-p~ 157 (444)
T TIGR02814 91 GLVDLLLRHGVRIVEASAFMQLTPAL-VRYRA--KGLHRDADGRVVIRNR------LIAK--V-SRPEVAEAFMSPA-PA 157 (444)
T ss_pred HHHHHHHHcCCCEEEeccccCCCcch-hhhhh--ccccccccccccccce------EEEe--c-CCHHHHHHhcCCC-cH
Confidence 566777788988776431 1 1211 11110 111000 00000000 0000 0 0011111111221 23
Q ss_pred HHHHHHHHccCccEEEEeccCHHHHHHHHHhC-CcEEEEec-CcccCCCCCcchHHHHHHHH---HHh------cCCCeE
Q 015722 249 KDVKWLQTITSLPILVKGVLTAEDASLAIQYG-AAGIIVSN-HGARQLDYVPATVMALEEVV---QAA------KGRVPV 317 (402)
Q Consensus 249 ~~i~~lr~~~~~Pv~vK~~~~~~da~~a~~aG-ad~I~vsn-~gg~~~d~~~~~~~~l~~i~---~~~------~~~i~v 317 (402)
+.|+.+.+. |+.|+++|+.+.+.| +|.|++.. .||+. +..+++..++.|. +.+ ..++||
T Consensus 158 ~~v~~L~~~--------G~it~eEA~~a~~~g~aD~Ivve~EAGGHt--g~~~~~~Llp~i~~lrd~v~~~~~y~~~VpV 227 (444)
T TIGR02814 158 HILQKLLAE--------GRITREEAELARRVPVADDICVEADSGGHT--DNRPLVVLLPAIIRLRDTLMRRYGYRKPIRV 227 (444)
T ss_pred HHHHHHHHc--------CCCCHHHHHHHHhCCCCcEEEEeccCCCCC--CCCcHHHHHHHHHHHHHHHhhcccCCCCceE
Confidence 567777664 334999999999999 49888862 25543 2345556667664 333 126899
Q ss_pred EEecCCCCHHHHHHHHHcCcCEEEEchHHHHhhhc
Q 015722 318 FLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAV 352 (402)
Q Consensus 318 ia~GGI~~g~dv~kal~lGAd~V~iGr~~l~~~~~ 352 (402)
++.|||.|+.++..++++||++|++||.|+.+..+
T Consensus 228 iAAGGI~t~~~vaAAlaLGAdgV~~GT~flat~Es 262 (444)
T TIGR02814 228 GAAGGIGTPEAAAAAFMLGADFIVTGSVNQCTVEA 262 (444)
T ss_pred EEeCCCCCHHHHHHHHHcCCcEEEeccHHHhCccc
Confidence 99999999999999999999999999999876544
No 77
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=99.25 E-value=4.3e-10 Score=112.61 Aligned_cols=223 Identities=18% Similarity=0.202 Sum_probs=135.7
Q ss_pred eeecCcccCCceeecccccccccCChh-----hHHHHHHHHHcCCeEEecCCccC--------------CH---H---HH
Q 015722 97 TTVLGFNISMPIMIAPTAFQKMAHPEG-----ECATARAASAAGTIMTLSSWATS--------------SV---E---EV 151 (402)
Q Consensus 97 t~i~G~~l~~Pi~iAPm~~~~~~~~~g-----e~ala~aa~~~G~~~~vs~~~~~--------------s~---e---ei 151 (402)
.+|.+.++++-|++|||... +. ++| .+..-+.-++.|..+++++.... +. + ++
T Consensus 5 ~~i~~~~lkNRiv~apm~~~-~~-~~G~~t~~~~~~y~~~A~gG~GlIi~e~~~v~~~~~~~~~~~~l~~d~~i~~~~~l 82 (343)
T cd04734 5 LQLGHLTLRNRIVSTAHATN-YA-EDGLPSERYIAYHEERARGGAGLIITEGSSVHPSDSPAFGNLNASDDEIIPGFRRL 82 (343)
T ss_pred eeeCCEEecCCeEECCcccc-cc-cCCCCCHHHHHHHHHHHhCCCCEEEEeeeeeCCcccCCCCccccCCHHHHHHHHHH
Confidence 56788999999999999533 22 332 34555555556777777543211 11 1 12
Q ss_pred hhc---CCCceEEEEeecC----------------C------------------h---hHHHHHHHHHHHcCCcEEEEec
Q 015722 152 SST---GPGIRFFQLYVTK----------------H------------------R---NVDAQLVKRAERAGFKAIALTV 191 (402)
Q Consensus 152 ~~~---~~~~~~~QLy~~~----------------d------------------~---~~~~~~l~ra~~~G~~ai~itv 191 (402)
.+. .+...++||.... + . +...+.+++|+++||++|.||.
T Consensus 83 ~~~vh~~g~~~~~Ql~H~G~~~~~~~~~~~~~~ps~~~~~~~~~~~~~mt~~eI~~ii~~f~~AA~ra~~aGfDgVeih~ 162 (343)
T cd04734 83 AEAVHAHGAVIMIQLTHLGRRGDGDGSWLPPLAPSAVPEPRHRAVPKAMEEEDIEEIIAAFADAARRCQAGGLDGVELQA 162 (343)
T ss_pred HHHHHhcCCeEEEeccCCCcCcCcccCCCcccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcc
Confidence 221 2245678875311 0 0 1224455677889999999988
Q ss_pred CCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCCccHHHHHHHHHccCc--cEEEEec--
Q 015722 192 DTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSL--PILVKGV-- 267 (402)
Q Consensus 192 d~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~--Pv~vK~~-- 267 (402)
.+-+ +.+.|-.|. .+.+ ++.-| +. +. ....+..+.++.+|+.++. ||.+|..
T Consensus 163 ahGy-------Ll~qFlsp~-~N~R------------tD~yG-Gs-le--nR~r~~~eiv~~ir~~vg~~~~v~iRl~~~ 218 (343)
T cd04734 163 AHGH-------LIDQFLSPL-TNRR------------TDEYG-GS-LE--NRMRFLLEVLAAVRAAVGPDFIVGIRISGD 218 (343)
T ss_pred ccch-------HHHHhhCCC-cCCC------------CCcCC-CC-HH--HHhHHHHHHHHHHHHHcCCCCeEEEEeehh
Confidence 5422 223342221 1111 01111 11 11 1345677899999999854 4555543
Q ss_pred ------cCHHH----HHHHHHhC-CcEEEEecCcccC-C----------CCCc-chHHHHHHHHHHhcCCCeEEEecCCC
Q 015722 268 ------LTAED----ASLAIQYG-AAGIIVSNHGARQ-L----------DYVP-ATVMALEEVVQAAKGRVPVFLDGGVR 324 (402)
Q Consensus 268 ------~~~~d----a~~a~~aG-ad~I~vsn~gg~~-~----------d~~~-~~~~~l~~i~~~~~~~i~via~GGI~ 324 (402)
.+.++ ++.+.++| +|.|.||. |... . ..+. ..++....+++.+ ++||+++|||+
T Consensus 219 ~~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~--~ipvi~~G~i~ 295 (343)
T cd04734 219 EDTEGGLSPDEALEIAARLAAEGLIDYVNVSA-GSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAV--DLPVFHAGRIR 295 (343)
T ss_pred hccCCCCCHHHHHHHHHHHHhcCCCCEEEeCC-CCCCcccccccccCCCCCCcchhHHHHHHHHHHc--CCCEEeeCCCC
Confidence 23333 56778898 89999963 2111 0 1111 1356777888877 79999999999
Q ss_pred CHHHHHHHHHcC-cCEEEEchHHHH
Q 015722 325 RGTDVFKALALG-ASGVFVGRPVPF 348 (402)
Q Consensus 325 ~g~dv~kal~lG-Ad~V~iGr~~l~ 348 (402)
+.+++.++++.| ||+|++||+++.
T Consensus 296 ~~~~~~~~l~~~~~D~V~~gR~~la 320 (343)
T cd04734 296 DPAEAEQALAAGHADMVGMTRAHIA 320 (343)
T ss_pred CHHHHHHHHHcCCCCeeeecHHhHh
Confidence 999999999976 999999999985
No 78
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=99.25 E-value=3.6e-10 Score=112.88 Aligned_cols=150 Identities=25% Similarity=0.270 Sum_probs=102.2
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCCccHHHHH
Q 015722 173 AQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVK 252 (402)
Q Consensus 173 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~ 252 (402)
.+.+++++++||+++.|++.|.+ +-+.|-.|. .+.+ ++.-| +. +. ..+.+..+.++
T Consensus 157 ~~aA~~a~~aGfDgVei~~~~gy-------Ll~qFlsp~-~N~R------------~D~yG-gs-l~--nr~rf~~eiv~ 212 (336)
T cd02932 157 VAAARRAVEAGFDVIEIHAAHGY-------LLHQFLSPL-SNKR------------TDEYG-GS-LE--NRMRFLLEVVD 212 (336)
T ss_pred HHHHHHHHHcCCCEEEEcccccc-------HHHHhcCCc-cCCC------------CcccC-CC-HH--HHhHHHHHHHH
Confidence 34456777899999999988754 223443231 0100 01001 11 11 24556789999
Q ss_pred HHHHcc--CccEEEEec--------cCHHH----HHHHHHhCCcEEEEecCccc--CC-CCCc-chHHHHHHHHHHhcCC
Q 015722 253 WLQTIT--SLPILVKGV--------LTAED----ASLAIQYGAAGIIVSNHGAR--QL-DYVP-ATVMALEEVVQAAKGR 314 (402)
Q Consensus 253 ~lr~~~--~~Pv~vK~~--------~~~~d----a~~a~~aGad~I~vsn~gg~--~~-d~~~-~~~~~l~~i~~~~~~~ 314 (402)
.+|+.+ +.||.+|.. .+.++ ++.+.+.|+|.|.++..+.+ +. ...+ ..++.+.++++.+ +
T Consensus 213 aIR~~vG~d~~v~vri~~~~~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~~--~ 290 (336)
T cd02932 213 AVRAVWPEDKPLFVRISATDWVEGGWDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQEA--G 290 (336)
T ss_pred HHHHHcCCCceEEEEEcccccCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhhC--C
Confidence 999999 689999954 24544 45677889999999753322 11 1111 1346677788777 7
Q ss_pred CeEEEecCCCCHHHHHHHHHcC-cCEEEEchHHHH
Q 015722 315 VPVFLDGGVRRGTDVFKALALG-ASGVFVGRPVPF 348 (402)
Q Consensus 315 i~via~GGI~~g~dv~kal~lG-Ad~V~iGr~~l~ 348 (402)
+||+++|||.+.+++.++|..| ||+|++||+++.
T Consensus 291 iPVi~~G~i~t~~~a~~~l~~g~aD~V~~gR~~i~ 325 (336)
T cd02932 291 IPVIAVGLITDPEQAEAILESGRADLVALGRELLR 325 (336)
T ss_pred CCEEEeCCCCCHHHHHHHHHcCCCCeehhhHHHHh
Confidence 9999999999999999999998 999999999986
No 79
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=99.22 E-value=1.2e-09 Score=102.55 Aligned_cols=174 Identities=21% Similarity=0.173 Sum_probs=114.0
Q ss_pred hHHHHHHHHHcCCeEEecCCccCCHHHHhhcCCCceEEEEeecCC-----h--hHHHHHHHHHHHcCCcEEEEecCCCCC
Q 015722 124 ECATARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKH-----R--NVDAQLVKRAERAGFKAIALTVDTPRL 196 (402)
Q Consensus 124 e~ala~aa~~~G~~~~vs~~~~~s~eei~~~~~~~~~~QLy~~~d-----~--~~~~~~l~ra~~~G~~ai~itvd~p~~ 196 (402)
-..+++++.+.|+..+.. .+...++++.+....|....+| +| . ....+.++.+.++|++++.+ |.+..
T Consensus 25 ~~~~a~a~~~~G~~~~~~-~~~~~i~~i~~~~~~Pil~~~~--~d~~~~~~~~~~~~~~v~~a~~aGad~I~~--d~~~~ 99 (221)
T PRK01130 25 MAAMALAAVQGGAVGIRA-NGVEDIKAIRAVVDVPIIGIIK--RDYPDSEVYITPTLKEVDALAAAGADIIAL--DATLR 99 (221)
T ss_pred HHHHHHHHHHCCCeEEEc-CCHHHHHHHHHhCCCCEEEEEe--cCCCCCCceECCCHHHHHHHHHcCCCEEEE--eCCCC
Confidence 368999999999875542 1112233344333344433333 11 0 01234578888999996654 44321
Q ss_pred CchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCCccHHHHHHHHHccCccEEEEeccCHHHHHHH
Q 015722 197 GRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLA 276 (402)
Q Consensus 197 g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~Pv~vK~~~~~~da~~a 276 (402)
. .| +.....+.++.+++..++|++ ..+.+.++++.+
T Consensus 100 ~-----------~p--------------------------------~~~~~~~~i~~~~~~~~i~vi-~~v~t~ee~~~a 135 (221)
T PRK01130 100 P-----------RP--------------------------------DGETLAELVKRIKEYPGQLLM-ADCSTLEEGLAA 135 (221)
T ss_pred C-----------CC--------------------------------CCCCHHHHHHHHHhCCCCeEE-EeCCCHHHHHHH
Confidence 0 00 001123456677664456665 467889999999
Q ss_pred HHhCCcEEEEecCcccCC--CCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHHH
Q 015722 277 IQYGAAGIIVSNHGARQL--DYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 348 (402)
Q Consensus 277 ~~aGad~I~vsn~gg~~~--d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~ 348 (402)
.++|+|.|.++++|.+.. ......++.+.++++.+ ++||++.|||++++|+.+++++|||+|++|+.++.
T Consensus 136 ~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~--~iPvia~GGI~t~~~~~~~l~~GadgV~iGsai~~ 207 (221)
T PRK01130 136 QKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAV--GCPVIAEGRINTPEQAKKALELGAHAVVVGGAITR 207 (221)
T ss_pred HHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHCCCCEEEEchHhcC
Confidence 999999998765543321 22344578889988877 79999999999999999999999999999998764
No 80
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.22 E-value=3.3e-10 Score=113.91 Aligned_cols=152 Identities=21% Similarity=0.228 Sum_probs=99.4
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCCccHHHHH
Q 015722 173 AQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVK 252 (402)
Q Consensus 173 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~ 252 (402)
.+.+++|+++||++|.|+..+-+ +-+.|-.|. .+.+ ++.-| +... ....+..+.++
T Consensus 147 ~~aA~~a~~aGfDgVeih~ahGy-------Ll~qFlsp~-~N~R------------~D~yG-Gsle---nR~r~~~eii~ 202 (353)
T cd04735 147 GEATRRAIEAGFDGVEIHGANGY-------LIQQFFSPH-SNRR------------TDEWG-GSLE---NRMRFPLAVVK 202 (353)
T ss_pred HHHHHHHHHcCCCEEEEccccch-------HHHHhcCCc-cCCC------------CcccC-CcHH---HHHHHHHHHHH
Confidence 34556788899999999986533 234443231 1111 01001 1111 23456778999
Q ss_pred HHHHccC------ccEEEEecc--------CHHH----HHHHHHhCCcEEEEecCcccCC--CCCcchHHHHHHHHHHhc
Q 015722 253 WLQTITS------LPILVKGVL--------TAED----ASLAIQYGAAGIIVSNHGARQL--DYVPATVMALEEVVQAAK 312 (402)
Q Consensus 253 ~lr~~~~------~Pv~vK~~~--------~~~d----a~~a~~aGad~I~vsn~gg~~~--d~~~~~~~~l~~i~~~~~ 312 (402)
.+|+.++ .||.+|... +.++ ++.+.++|+|.|.|+..+.+.. .........+..+++.+.
T Consensus 203 ~vr~~vg~~~~~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~ 282 (353)
T cd04735 203 AVQEVIDKHADKDFILGYRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIA 282 (353)
T ss_pred HHHHHhccccCCCceEEEEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhC
Confidence 9999874 456666542 3333 5678899999999975322211 111223455666666664
Q ss_pred CCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHHH
Q 015722 313 GRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 348 (402)
Q Consensus 313 ~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~ 348 (402)
.++|||++|||++++++.++++.|||+|++||+++.
T Consensus 283 ~~iPVi~~Ggi~t~e~ae~~l~~gaD~V~~gR~lia 318 (353)
T cd04735 283 GRLPLIAVGSINTPDDALEALETGADLVAIGRGLLV 318 (353)
T ss_pred CCCCEEEECCCCCHHHHHHHHHcCCChHHHhHHHHh
Confidence 579999999999999999999999999999999986
No 81
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=99.21 E-value=8.3e-10 Score=112.09 Aligned_cols=148 Identities=17% Similarity=0.232 Sum_probs=98.5
Q ss_pred HHHHHHHHHcCCcEEEEecCC-CCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCCccHHHH
Q 015722 173 AQLVKRAERAGFKAIALTVDT-PRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDV 251 (402)
Q Consensus 173 ~~~l~ra~~~G~~ai~itvd~-p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i 251 (402)
.+..++|+++||++|.|+... -+ +.+.|--|. .+.+ ++.-| +. +. ....+..+.|
T Consensus 153 ~~AA~ra~~AGfDgVEih~ah~Gy-------Ll~qFLSp~-~N~R------------tDeyG-Gs-le--nR~rf~~eii 208 (382)
T cd02931 153 GESAVIAKEAGFDGVEIHAVHEGY-------LLDQFTISL-FNKR------------TDKYG-GS-LE--NRLRFAIEIV 208 (382)
T ss_pred HHHHHHHHHcCCCEEEEeccccCh-------HHHHhcCCc-cCCC------------CCcCC-CC-HH--HHhHHHHHHH
Confidence 345567788999999998743 22 223442221 1111 01001 11 11 2345678999
Q ss_pred HHHHHcc--CccEEEEecc----------------------CHHH----HHHHHHhCCcEEEEecCcccC--CC-C----
Q 015722 252 KWLQTIT--SLPILVKGVL----------------------TAED----ASLAIQYGAAGIIVSNHGARQ--LD-Y---- 296 (402)
Q Consensus 252 ~~lr~~~--~~Pv~vK~~~----------------------~~~d----a~~a~~aGad~I~vsn~gg~~--~d-~---- 296 (402)
+.+|+.+ +.||.+|... +.++ ++.+.++|+|.|.|+. |+. .. .
T Consensus 209 ~~vr~~~g~~f~v~vri~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~--g~~~~~~~~~~~~ 286 (382)
T cd02931 209 EEIKARCGEDFPVSLRYSVKSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDA--GSYDAWYWNHPPM 286 (382)
T ss_pred HHHHHhcCCCceEEEEEechhhccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCC--CCCcccccccCCc
Confidence 9999998 4699999752 2344 5677789999999953 321 11 1
Q ss_pred --Ccch-HHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcC-cCEEEEchHHHH
Q 015722 297 --VPAT-VMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALG-ASGVFVGRPVPF 348 (402)
Q Consensus 297 --~~~~-~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lG-Ad~V~iGr~~l~ 348 (402)
.... +.....+++.+ ++||+++|||++++++.++|+.| ||+|++||+++.
T Consensus 287 ~~~~~~~~~~~~~ik~~~--~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~la 340 (382)
T cd02931 287 YQKKGMYLPYCKALKEVV--DVPVIMAGRMEDPELASEAINEGIADMISLGRPLLA 340 (382)
T ss_pred cCCcchhHHHHHHHHHHC--CCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhHh
Confidence 1111 34567777777 79999999999999999999976 999999999885
No 82
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=99.19 E-value=9.1e-10 Score=110.90 Aligned_cols=234 Identities=20% Similarity=0.237 Sum_probs=157.0
Q ss_pred cCCceeecccccccccCChhhHHHHHHHHHcCCeEEecCCccCCH-------H-HHhhcC--CCceEEEEeecCChhHHH
Q 015722 104 ISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSV-------E-EVSSTG--PGIRFFQLYVTKHRNVDA 173 (402)
Q Consensus 104 l~~Pi~iAPm~~~~~~~~~ge~ala~aa~~~G~~~~vs~~~~~s~-------e-ei~~~~--~~~~~~QLy~~~d~~~~~ 173 (402)
+.--.++||++.. |+++++|.|.++|+..+-|+|+.+.. | .+.+.. ...+.+||- ...++...
T Consensus 263 ~r~K~~LaPLTTv------GNLPFRRlCk~lGADvTcgEMA~~tpLlqG~~sEWALlkRH~sEdiFGVQla-g~~pdt~~ 335 (614)
T KOG2333|consen 263 FRDKKYLAPLTTV------GNLPFRRLCKKLGADVTCGEMAMATPLLQGTASEWALLKRHQSEDIFGVQLA-GSKPDTAA 335 (614)
T ss_pred cccceeecccccc------CCccHHHHHHHhCCccchhHHHHHHHHhcccchhhhhhhhcCcccceeeEec-cCChHHHH
Confidence 4466789998654 48899999999999988888864321 1 122222 256789997 45556555
Q ss_pred HHHHHH-HHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCCccHHHHH
Q 015722 174 QLVKRA-ERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVK 252 (402)
Q Consensus 174 ~~l~ra-~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~ 252 (402)
+.++.+ +..-++.|+||++||.. +. + + . |.+..+++ .|......++
T Consensus 336 kaaq~i~e~~~VDFIDlN~GCPID------lv--y--------~-----------q----G~GsALl~--rp~rl~~~l~ 382 (614)
T KOG2333|consen 336 KAAQVIAETCDVDFIDLNMGCPID------LV--Y--------R-----------Q----GGGSALLN--RPARLIRILR 382 (614)
T ss_pred HHHHHHHhhcceeeeeccCCCChh------ee--e--------c-----------c----CCcchhhc--CcHHHHHHHH
Confidence 555543 34679999999999962 10 0 0 0 11223332 3444445677
Q ss_pred HHHHcc-CccEEEEeccC--------HHHHHHHH-HhCCcEEEEecCcc--cCCCCCcchHHHHHHHHHHhcCCCeEEEe
Q 015722 253 WLQTIT-SLPILVKGVLT--------AEDASLAI-QYGAAGIIVSNHGA--RQLDYVPATVMALEEVVQAAKGRVPVFLD 320 (402)
Q Consensus 253 ~lr~~~-~~Pv~vK~~~~--------~~da~~a~-~aGad~I~vsn~gg--~~~d~~~~~~~~l~~i~~~~~~~i~via~ 320 (402)
...... .+|+.||+... .+-+..+. +-|+++|++ ||. .|-+.-.+.|+.+.+|.+.+...+|+|++
T Consensus 383 ~m~~vs~~iPiTVKiRTG~keg~~~a~~Li~~i~newg~savTl--HGRSRqQRYTK~AnWdYi~e~a~~ak~~l~liGN 460 (614)
T KOG2333|consen 383 AMNAVSGDIPITVKIRTGTKEGHPVAHELIPRIVNEWGASAVTL--HGRSRQQRYTKSANWDYIEECADKAKSALPLIGN 460 (614)
T ss_pred HHHHhccCCCeEEEEecccccCchhHHHHHHHHhhccCcceEEe--cCchhhhhhhcccChHHHHHHHHhcccCceeEec
Confidence 766666 46999998632 12234444 789999999 654 35566778999999999988767999999
Q ss_pred cCCCCHHHHHHHHHcC--cCEEEEch-----HHHHhhhcCCh---HHHHHHHHHHHHHHHHHHHHhCCC
Q 015722 321 GGVRRGTDVFKALALG--ASGVFVGR-----PVPFSLAVDGE---AGVRKVLQMLRDEFELTMALSGCR 379 (402)
Q Consensus 321 GGI~~g~dv~kal~lG--Ad~V~iGr-----~~l~~~~~~G~---~gv~~~i~~l~~el~~~m~~~G~~ 379 (402)
|.|-+.+|-.+.+..+ .+.||||| ||||...-.-. ..-.+-++.|++-...-|+..|.+
T Consensus 461 GDi~S~eDw~~~~~~~p~v~svMIaRGALIKPWIFtEIkeqq~wD~sSteRldiL~df~nyGLeHWGSD 529 (614)
T KOG2333|consen 461 GDILSWEDWYERLNQNPNVDSVMIARGALIKPWIFTEIKEQQHWDISSTERLDILKDFCNYGLEHWGSD 529 (614)
T ss_pred CccccHHHHHHHhhcCCCcceEEeeccccccchHhhhhhhhhcCCccchHHHHHHHHHHhhhhhhcCCc
Confidence 9999999999999876 89999999 88875321000 001123556666666666666654
No 83
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.17 E-value=1.9e-09 Score=108.47 Aligned_cols=149 Identities=18% Similarity=0.180 Sum_probs=98.6
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCCccHHHHH
Q 015722 173 AQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVK 252 (402)
Q Consensus 173 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~ 252 (402)
.+..++|+++||++|.|+..+-+ +-+.|--|. .+.+ ++.-| +... ....+..+.|+
T Consensus 147 ~~AA~~a~~aGfDgVeih~ahGy-------Ll~qFLSp~-~N~R------------tDeYG-Gsle---nR~Rf~~eii~ 202 (361)
T cd04747 147 ARAAADARRLGFDGIELHGAHGY-------LIDQFFWAG-TNRR------------ADGYG-GSLA---ARSRFAAEVVK 202 (361)
T ss_pred HHHHHHHHHcCCCEEEEecccch-------HHHHhcCCC-CCCC------------CCCCC-CCHH---HHHHHHHHHHH
Confidence 44557788899999999988744 334442221 1111 01001 0111 12446779999
Q ss_pred HHHHcc--CccEEEEecc------------CHHH----HHHHHHhCCcEEEEecCcc-cCCCCCcchHHHHHHHHHHhcC
Q 015722 253 WLQTIT--SLPILVKGVL------------TAED----ASLAIQYGAAGIIVSNHGA-RQLDYVPATVMALEEVVQAAKG 313 (402)
Q Consensus 253 ~lr~~~--~~Pv~vK~~~------------~~~d----a~~a~~aGad~I~vsn~gg-~~~d~~~~~~~~l~~i~~~~~~ 313 (402)
.+|+.+ +.||.+|... +.++ ++.+.++|+|.|.++...- .+.. ....+.....+++.+
T Consensus 203 air~~vG~d~~v~vRis~~~~~~~~~~~g~~~~e~~~~~~~l~~~gvd~i~vs~g~~~~~~~-~~~~~~~~~~~k~~~-- 279 (361)
T cd04747 203 AIRAAVGPDFPIILRFSQWKQQDYTARLADTPDELEALLAPLVDAGVDIFHCSTRRFWEPEF-EGSELNLAGWTKKLT-- 279 (361)
T ss_pred HHHHHcCCCCeEEEEECcccccccccCCCCCHHHHHHHHHHHHHcCCCEEEecCCCccCCCc-CccchhHHHHHHHHc--
Confidence 999998 4799999762 3333 4556889999999875211 1111 112345556677766
Q ss_pred CCeEEEecCC------------------CCHHHHHHHHHcC-cCEEEEchHHHH
Q 015722 314 RVPVFLDGGV------------------RRGTDVFKALALG-ASGVFVGRPVPF 348 (402)
Q Consensus 314 ~i~via~GGI------------------~~g~dv~kal~lG-Ad~V~iGr~~l~ 348 (402)
++||+++||| ++++++.++|.-| ||+|++||+++.
T Consensus 280 ~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~g~~D~V~~gR~~ia 333 (361)
T cd04747 280 GLPTITVGSVGLDGDFIGAFAGDEGASPASLDRLLERLERGEFDLVAVGRALLS 333 (361)
T ss_pred CCCEEEECCcccccccccccccccccccCCHHHHHHHHHCCCCCeehhhHHHHh
Confidence 7999999999 5999999999976 999999999885
No 84
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=99.16 E-value=3.7e-09 Score=99.26 Aligned_cols=98 Identities=23% Similarity=0.250 Sum_probs=79.0
Q ss_pred HHHHHHHHHccCccEEEEeccCHHHHHHHHHhCCcEEEEecCcccCC--CCCcchHHHHHHHHHHhcCCCeEEEecCCCC
Q 015722 248 WKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQL--DYVPATVMALEEVVQAAKGRVPVFLDGGVRR 325 (402)
Q Consensus 248 ~~~i~~lr~~~~~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~~~--d~~~~~~~~l~~i~~~~~~~i~via~GGI~~ 325 (402)
.+.++++++..++|+++ .+.++++++.+.++|+|.|.++++|-+.. ....+.++.+.++++.+ ++||++.|||++
T Consensus 112 ~~~i~~~~~~g~~~iiv-~v~t~~ea~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~--~ipvia~GGI~~ 188 (219)
T cd04729 112 AELIKRIHEEYNCLLMA-DISTLEEALNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKAL--GIPVIAEGRINS 188 (219)
T ss_pred HHHHHHHHHHhCCeEEE-ECCCHHHHHHHHHcCCCEEEccCccccccccCCCCCCHHHHHHHHHhc--CCCEEEeCCCCC
Confidence 35677777765577765 56789999999999999997766653221 22345678899998877 799999999999
Q ss_pred HHHHHHHHHcCcCEEEEchHHHH
Q 015722 326 GTDVFKALALGASGVFVGRPVPF 348 (402)
Q Consensus 326 g~dv~kal~lGAd~V~iGr~~l~ 348 (402)
++|+.+++.+|||+|++|+.++.
T Consensus 189 ~~~~~~~l~~GadgV~vGsal~~ 211 (219)
T cd04729 189 PEQAAKALELGADAVVVGSAITR 211 (219)
T ss_pred HHHHHHHHHCCCCEEEEchHHhC
Confidence 99999999999999999999764
No 85
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=99.11 E-value=1.3e-09 Score=108.87 Aligned_cols=148 Identities=19% Similarity=0.148 Sum_probs=102.6
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCCccHHHHH
Q 015722 173 AQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVK 252 (402)
Q Consensus 173 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~ 252 (402)
.+.+++|+++||++|.|+..|-+ +-+.|--|. .+.+ ++.-| +. +. ....+..+.++
T Consensus 155 ~~aA~~a~~aGfDgVeih~ahGy-------Ll~qFlSp~-~N~R------------~D~yG-Gs-le--nR~rf~~eii~ 210 (338)
T cd02933 155 RQAARNAIEAGFDGVEIHGANGY-------LIDQFLRDG-SNKR------------TDEYG-GS-IE--NRARFLLEVVD 210 (338)
T ss_pred HHHHHHHHHcCCCEEEEccccch-------hHHHhcCCc-cCCC------------CCcCC-Cc-HH--HhhhHHHHHHH
Confidence 45567888899999999988744 234443231 1111 01001 11 11 12346778999
Q ss_pred HHHHccCc-cEEEEecc-----------CHHH----HHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCe
Q 015722 253 WLQTITSL-PILVKGVL-----------TAED----ASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVP 316 (402)
Q Consensus 253 ~lr~~~~~-Pv~vK~~~-----------~~~d----a~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~ 316 (402)
.+|+.++. ||.+|... +.++ ++.+.++|+|.|.||. |..........++...+|++.+ ++|
T Consensus 211 air~~vg~d~v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~-g~~~~~~~~~~~~~~~~ik~~~--~ip 287 (338)
T cd02933 211 AVAEAIGADRVGIRLSPFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVE-PRVAGNPEDQPPDFLDFLRKAF--KGP 287 (338)
T ss_pred HHHHHhCCCceEEEECccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEec-CCCCCcccccchHHHHHHHHHc--CCC
Confidence 99999854 89999752 3333 5778889999999973 3322222334567788888887 799
Q ss_pred EEEecCCCCHHHHHHHHHcC-cCEEEEchHHHH
Q 015722 317 VFLDGGVRRGTDVFKALALG-ASGVFVGRPVPF 348 (402)
Q Consensus 317 via~GGI~~g~dv~kal~lG-Ad~V~iGr~~l~ 348 (402)
|+++|||+ ++++.++|+.| ||+|++||+++.
T Consensus 288 vi~~G~i~-~~~a~~~l~~g~~D~V~~gR~~la 319 (338)
T cd02933 288 LIAAGGYD-AESAEAALADGKADLVAFGRPFIA 319 (338)
T ss_pred EEEECCCC-HHHHHHHHHcCCCCEEEeCHhhhh
Confidence 99999997 99999999976 999999999885
No 86
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=99.08 E-value=5.1e-09 Score=94.92 Aligned_cols=96 Identities=25% Similarity=0.262 Sum_probs=74.1
Q ss_pred HHHHHHHHHccCccEEEEeccCHHHHHHHHHhCCcEEEEecCcccCCC-CCcchHHHHHHHHHHhcCCCeEEEecCCCCH
Q 015722 248 WKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLD-YVPATVMALEEVVQAAKGRVPVFLDGGVRRG 326 (402)
Q Consensus 248 ~~~i~~lr~~~~~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~~~d-~~~~~~~~l~~i~~~~~~~i~via~GGI~~g 326 (402)
.+.++++++.. -+++-.+.|.|++..|.++|+|.|-....|.+... +..|.++++.++++. .+|||+.|+|.++
T Consensus 82 ~~li~~i~~~~--~l~MADist~ee~~~A~~~G~D~I~TTLsGYT~~t~~~~pD~~lv~~l~~~---~~pvIaEGri~tp 156 (192)
T PF04131_consen 82 EELIREIKEKY--QLVMADISTLEEAINAAELGFDIIGTTLSGYTPYTKGDGPDFELVRELVQA---DVPVIAEGRIHTP 156 (192)
T ss_dssp HHHHHHHHHCT--SEEEEE-SSHHHHHHHHHTT-SEEE-TTTTSSTTSTTSSHHHHHHHHHHHT---TSEEEEESS--SH
T ss_pred HHHHHHHHHhC--cEEeeecCCHHHHHHHHHcCCCEEEcccccCCCCCCCCCCCHHHHHHHHhC---CCcEeecCCCCCH
Confidence 36689999987 66778999999999999999999988776765321 255678899988763 7999999999999
Q ss_pred HHHHHHHHcCcCEEEEchHHHH
Q 015722 327 TDVFKALALGASGVFVGRPVPF 348 (402)
Q Consensus 327 ~dv~kal~lGAd~V~iGr~~l~ 348 (402)
+++.++|.+||++|.||+++-.
T Consensus 157 e~a~~al~~GA~aVVVGsAITr 178 (192)
T PF04131_consen 157 EQAAKALELGAHAVVVGSAITR 178 (192)
T ss_dssp HHHHHHHHTT-SEEEE-HHHH-
T ss_pred HHHHHHHhcCCeEEEECcccCC
Confidence 9999999999999999998654
No 87
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.06 E-value=1.9e-08 Score=110.83 Aligned_cols=149 Identities=21% Similarity=0.230 Sum_probs=98.2
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCCccHHHHH
Q 015722 173 AQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVK 252 (402)
Q Consensus 173 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~ 252 (402)
.+.+++|+++||++|.|+..+-+ +.+.|-.|. .+.+ ++.-| +. +. ....+..+.++
T Consensus 554 ~~aA~~a~~aGfDgveih~ahGy-------Ll~qFlsp~-~N~R------------tD~yG-Gs-le--nR~r~~~eiv~ 609 (765)
T PRK08255 554 VAAARRAAEAGFDWLELHCAHGY-------LLSSFISPL-TNQR------------TDEYG-GS-LE--NRLRYPLEVFR 609 (765)
T ss_pred HHHHHHHHHcCCCEEEEecccch-------HHHHhcCCC-CCCC------------CCCCC-CC-HH--HHhHHHHHHHH
Confidence 34456778899999999987433 223442221 0000 01001 01 10 12345678999
Q ss_pred HHHHcc--CccEEEEecc--------CHHH----HHHHHHhCCcEEEEecCcccCC----CCCcc-hHHHHHHHHHHhcC
Q 015722 253 WLQTIT--SLPILVKGVL--------TAED----ASLAIQYGAAGIIVSNHGARQL----DYVPA-TVMALEEVVQAAKG 313 (402)
Q Consensus 253 ~lr~~~--~~Pv~vK~~~--------~~~d----a~~a~~aGad~I~vsn~gg~~~----d~~~~-~~~~l~~i~~~~~~ 313 (402)
.+|+.+ +.||.+|+.. +.++ ++.+.++|+|.|.||. |++.. ..++. ......++++.+
T Consensus 610 ~ir~~~~~~~~v~~ri~~~~~~~~g~~~~~~~~~~~~l~~~g~d~i~vs~-g~~~~~~~~~~~~~~~~~~~~~ik~~~-- 686 (765)
T PRK08255 610 AVRAVWPAEKPMSVRISAHDWVEGGNTPDDAVEIARAFKAAGADLIDVSS-GQVSKDEKPVYGRMYQTPFADRIRNEA-- 686 (765)
T ss_pred HHHHhcCCCCeeEEEEccccccCCCCCHHHHHHHHHHHHhcCCcEEEeCC-CCCCcCCCCCcCccccHHHHHHHHHHc--
Confidence 999987 4799999762 2333 5778899999999963 22211 11111 234456677776
Q ss_pred CCeEEEecCCCCHHHHHHHHHcC-cCEEEEchHHHH
Q 015722 314 RVPVFLDGGVRRGTDVFKALALG-ASGVFVGRPVPF 348 (402)
Q Consensus 314 ~i~via~GGI~~g~dv~kal~lG-Ad~V~iGr~~l~ 348 (402)
++||+++|+|++++++.++|..| ||+|++||+++.
T Consensus 687 ~~pv~~~G~i~~~~~a~~~l~~g~~D~v~~gR~~l~ 722 (765)
T PRK08255 687 GIATIAVGAISEADHVNSIIAAGRADLCALARPHLA 722 (765)
T ss_pred CCEEEEeCCCCCHHHHHHHHHcCCcceeeEcHHHHh
Confidence 79999999999999999999976 999999999986
No 88
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=99.06 E-value=8.3e-09 Score=103.77 Aligned_cols=226 Identities=16% Similarity=0.128 Sum_probs=136.1
Q ss_pred eeecCcccCCceeecccccc--cccCC-hhhHHHHHHHHHcCCeEEecCCccC--------------C---HH---HHhh
Q 015722 97 TTVLGFNISMPIMIAPTAFQ--KMAHP-EGECATARAASAAGTIMTLSSWATS--------------S---VE---EVSS 153 (402)
Q Consensus 97 t~i~G~~l~~Pi~iAPm~~~--~~~~~-~ge~ala~aa~~~G~~~~vs~~~~~--------------s---~e---ei~~ 153 (402)
.+|.++++++-|+.|||... .-..| +..+..-+.-++-|+.+++++.... + ++ ++++
T Consensus 5 ~~ig~~~lkNRiv~~p~~~~~~~~~~~~~~~~~~y~~rA~gG~glii~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~l~~ 84 (353)
T cd02930 5 LDLGFTTLRNRVLMGSMHTGLEELDDGIDRLAAFYAERARGGVGLIVTGGFAPNEAGKLGPGGPVLNSPRQAAGHRLITD 84 (353)
T ss_pred eeECCEEEccccEeCCccccccCCCCCCHHHHHHHHHHhcCCceEEEEeeEEeCCcccCCCCCcccCCHHHHHHHHHHHH
Confidence 57888999999999999521 11112 2334555555566787776543111 1 11 1222
Q ss_pred c---CCCceEEEEeecCC---------------------------------hhHHHHHHHHHHHcCCcEEEEecCCCCCC
Q 015722 154 T---GPGIRFFQLYVTKH---------------------------------RNVDAQLVKRAERAGFKAIALTVDTPRLG 197 (402)
Q Consensus 154 ~---~~~~~~~QLy~~~d---------------------------------~~~~~~~l~ra~~~G~~ai~itvd~p~~g 197 (402)
. .+...++||..... .+...+.+++|+++||+++.|+...-+
T Consensus 85 ~vh~~g~~~~~QL~h~G~~~~~~~~~~ps~~~~~~~~~~p~~mt~~eI~~i~~~f~~aA~~a~~aGfDgVeih~ahGy-- 162 (353)
T cd02930 85 AVHAEGGKIALQILHAGRYAYHPLCVAPSAIRAPINPFTPRELSEEEIEQTIEDFARCAALAREAGYDGVEIMGSEGY-- 162 (353)
T ss_pred HHHHcCCEEEeeccCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccch--
Confidence 1 22456788842110 112344556778899999999764322
Q ss_pred chhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCCccHHHHHHHHHccC--ccEEEEec--------
Q 015722 198 RREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITS--LPILVKGV-------- 267 (402)
Q Consensus 198 ~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~--~Pv~vK~~-------- 267 (402)
+.+.|-.|. .+.+ ++.-| +. +. ....+..+.++.+|+.++ .||.+|..
T Consensus 163 -----Ll~qFlsp~-~N~R------------tD~yG-Gs-le--nR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g 220 (353)
T cd02930 163 -----LINQFLAPR-TNKR------------TDEWG-GS-FE--NRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEGG 220 (353)
T ss_pred -----HHHHhcCCc-cCCC------------cCccC-CC-HH--HHhHHHHHHHHHHHHHcCCCceEEEEecccccCCCC
Confidence 233442221 1100 01001 11 11 134567789999999984 56666654
Q ss_pred cCHHH----HHHHHHhCCcEEEEec--CcccCC----CCCcc-hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcC
Q 015722 268 LTAED----ASLAIQYGAAGIIVSN--HGARQL----DYVPA-TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALG 336 (402)
Q Consensus 268 ~~~~d----a~~a~~aGad~I~vsn--~gg~~~----d~~~~-~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lG 336 (402)
.+.++ ++.+.++|+|.|.||. |..+.. ..... ......++++.+ ++||+++|+|++.+++.++++.|
T Consensus 221 ~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v--~iPVi~~G~i~~~~~a~~~i~~g 298 (353)
T cd02930 221 STWEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAV--DIPVIASNRINTPEVAERLLADG 298 (353)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhC--CCCEEEcCCCCCHHHHHHHHHCC
Confidence 24444 5677889999999974 222211 01111 234556777777 79999999999999999999976
Q ss_pred -cCEEEEchHHHH
Q 015722 337 -ASGVFVGRPVPF 348 (402)
Q Consensus 337 -Ad~V~iGr~~l~ 348 (402)
+|+|++||+++.
T Consensus 299 ~~D~V~~gR~~l~ 311 (353)
T cd02930 299 DADMVSMARPFLA 311 (353)
T ss_pred CCChhHhhHHHHH
Confidence 999999999885
No 89
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=99.06 E-value=1.7e-08 Score=101.51 Aligned_cols=150 Identities=25% Similarity=0.323 Sum_probs=99.0
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhh-cCCCccHHHH
Q 015722 173 AQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQ-IDRSLNWKDV 251 (402)
Q Consensus 173 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~i 251 (402)
.+..+||+++||+++.|+--+-+ |.+.|-.|. .+.+ ++ +|-++. .--.+..+.+
T Consensus 152 ~~AA~rA~~AGFDgVEIH~AhGY-------Li~qFlsp~-tN~R------------tD-----~YGGSlENR~Rf~~EVv 206 (363)
T COG1902 152 ARAARRAKEAGFDGVEIHGAHGY-------LLSQFLSPL-TNKR------------TD-----EYGGSLENRARFLLEVV 206 (363)
T ss_pred HHHHHHHHHcCCCEEEEeeccch-------HHHHhcCCc-cCCC------------CC-----ccCCcHHHHHHHHHHHH
Confidence 45567888999999999875433 334453231 1111 11 111110 1123577999
Q ss_pred HHHHHccC--ccEEEEecc---------CHHH----HHHHHHhC-CcEEEEecCccc---CCCCC-cc-hHHHHHHHHHH
Q 015722 252 KWLQTITS--LPILVKGVL---------TAED----ASLAIQYG-AAGIIVSNHGAR---QLDYV-PA-TVMALEEVVQA 310 (402)
Q Consensus 252 ~~lr~~~~--~Pv~vK~~~---------~~~d----a~~a~~aG-ad~I~vsn~gg~---~~d~~-~~-~~~~l~~i~~~ 310 (402)
+.+|+.++ .||.++... +.++ ++.+.+.| +|.|.++..+.. ..... +. .......++..
T Consensus 207 ~aVr~~vg~~~~vg~Rls~~d~~~~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~ 286 (363)
T COG1902 207 DAVREAVGADFPVGVRLSPDDFFDGGGLTIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKA 286 (363)
T ss_pred HHHHHHhCCCceEEEEECccccCCCCCCCHHHHHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHh
Confidence 99999995 589999762 2233 67788999 799999853221 11111 11 12344556655
Q ss_pred hcCCCeEEEecCCCCHHHHHHHHHcC-cCEEEEchHHHHh
Q 015722 311 AKGRVPVFLDGGVRRGTDVFKALALG-ASGVFVGRPVPFS 349 (402)
Q Consensus 311 ~~~~i~via~GGI~~g~dv~kal~lG-Ad~V~iGr~~l~~ 349 (402)
+ ++|+|++|+|++++.+.++|+-| ||.|.+||||+..
T Consensus 287 ~--~~pvi~~G~i~~~~~Ae~~l~~g~aDlVa~gR~~lad 324 (363)
T COG1902 287 V--RIPVIAVGGINDPEQAEEILASGRADLVAMGRPFLAD 324 (363)
T ss_pred c--CCCEEEeCCCCCHHHHHHHHHcCCCCEEEechhhhcC
Confidence 5 69999999999999999999998 9999999999863
No 90
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=99.05 E-value=2.7e-08 Score=100.43 Aligned_cols=146 Identities=18% Similarity=0.097 Sum_probs=94.2
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhh-hcCCCccHHHH
Q 015722 173 AQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVAN-QIDRSLNWKDV 251 (402)
Q Consensus 173 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~~~~~~i 251 (402)
.+..++|+++||++|.|+..+-+ +-+.|--|. .+.+ ++ +|-++ +.--.+..+.|
T Consensus 162 ~~AA~rA~~AGfDGVEIh~ahGy-------Ll~qFLSp~-~N~R------------tD-----eYGGslENR~Rf~~Eiv 216 (362)
T PRK10605 162 RQAIANAREAGFDLVELHSAHGY-------LLHQFLSPS-SNQR------------TD-----QYGGSVENRARLVLEVV 216 (362)
T ss_pred HHHHHHHHHcCCCEEEEcccccc-------hHHHhcCCc-CCCC------------CC-----cCCCcHHHHHHHHHHHH
Confidence 34557888899999999876533 234443231 1111 01 01111 01123567999
Q ss_pred HHHHHccC-ccEEEEec-----------cCHHH-----HHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCC
Q 015722 252 KWLQTITS-LPILVKGV-----------LTAED-----ASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGR 314 (402)
Q Consensus 252 ~~lr~~~~-~Pv~vK~~-----------~~~~d-----a~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~ 314 (402)
+.+|+.++ -+|.+|.. .+.++ ++.+.+.|+|.|.|+... . ....+-.......|++.+ +
T Consensus 217 ~aVr~~vg~~~igvRis~~~~~~~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~-~-~~~~~~~~~~~~~ik~~~--~ 292 (362)
T PRK10605 217 DAGIAEWGADRIGIRISPLGTFNNVDNGPNEEADALYLIEQLGKRGIAYLHMSEPD-W-AGGEPYSDAFREKVRARF--H 292 (362)
T ss_pred HHHHHHcCCCeEEEEECCccccccCCCCCCHHHHHHHHHHHHHHcCCCEEEecccc-c-cCCccccHHHHHHHHHHC--C
Confidence 99999883 35777763 23344 466778899999998521 1 111111233446666666 6
Q ss_pred CeEEEecCCCCHHHHHHHHHcC-cCEEEEchHHHH
Q 015722 315 VPVFLDGGVRRGTDVFKALALG-ASGVFVGRPVPF 348 (402)
Q Consensus 315 i~via~GGI~~g~dv~kal~lG-Ad~V~iGr~~l~ 348 (402)
+||++.|++ +++++.++|+.| ||+|++|||++.
T Consensus 293 ~pv~~~G~~-~~~~ae~~i~~G~~D~V~~gR~~ia 326 (362)
T PRK10605 293 GVIIGAGAY-TAEKAETLIGKGLIDAVAFGRDYIA 326 (362)
T ss_pred CCEEEeCCC-CHHHHHHHHHcCCCCEEEECHHhhh
Confidence 899999996 899999999998 999999999986
No 91
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.04 E-value=2.7e-09 Score=106.63 Aligned_cols=151 Identities=21% Similarity=0.300 Sum_probs=102.6
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCCccHHHH
Q 015722 172 DAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDV 251 (402)
Q Consensus 172 ~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i 251 (402)
..+.+++++++||++|.|+..+-+ +-+.|-.|. .+.+ ++.-| +. +. ....+..+.|
T Consensus 151 ~~~aA~ra~~aGfDgVeih~a~gy-------Ll~qFlsp~-~N~R------------~D~yG-Gs-le--nR~rf~~EiI 206 (338)
T cd04733 151 FAHAARLAQEAGFDGVQIHAAHGY-------LLSQFLSPL-TNKR------------TDEYG-GS-LE--NRARLLLEIY 206 (338)
T ss_pred HHHHHHHHHHcCCCEEEEchhhhh-------HHHHhcCCc-CCCC------------CccCC-CC-HH--HHHHHHHHHH
Confidence 355667888999999999988743 234443231 1111 01001 11 11 2345678999
Q ss_pred HHHHHcc--CccEEEEec--------cCHHH----HHHHHHhCCcEEEEecCcccCCCCC---------cc--hHHHHHH
Q 015722 252 KWLQTIT--SLPILVKGV--------LTAED----ASLAIQYGAAGIIVSNHGARQLDYV---------PA--TVMALEE 306 (402)
Q Consensus 252 ~~lr~~~--~~Pv~vK~~--------~~~~d----a~~a~~aGad~I~vsn~gg~~~d~~---------~~--~~~~l~~ 306 (402)
+.+|+.+ +.||.+|.. .+.++ ++.+.++|+|.|.|+.....+.... +. .++...+
T Consensus 207 ~aIR~avG~d~~v~vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (338)
T cd04733 207 DAIRAAVGPGFPVGIKLNSADFQRGGFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEK 286 (338)
T ss_pred HHHHHHcCCCCeEEEEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHH
Confidence 9999998 479999985 35544 5677899999999953211111100 01 1455667
Q ss_pred HHHHhcCCCeEEEecCCCCHHHHHHHHHcC-cCEEEEchHHHH
Q 015722 307 VVQAAKGRVPVFLDGGVRRGTDVFKALALG-ASGVFVGRPVPF 348 (402)
Q Consensus 307 i~~~~~~~i~via~GGI~~g~dv~kal~lG-Ad~V~iGr~~l~ 348 (402)
+++.+ ++||+++|+|.+.+++.++++.| ||.|++||+++.
T Consensus 287 ik~~v--~iPVi~~G~i~t~~~a~~~l~~g~aD~V~lgR~~ia 327 (338)
T cd04733 287 IRKVT--KTPLMVTGGFRTRAAMEQALASGAVDGIGLARPLAL 327 (338)
T ss_pred HHHHc--CCCEEEeCCCCCHHHHHHHHHcCCCCeeeeChHhhh
Confidence 88777 79999999999999999999987 999999999985
No 92
>KOG1799 consensus Dihydropyrimidine dehydrogenase [Nucleotide transport and metabolism]
Probab=99.04 E-value=6.7e-10 Score=107.82 Aligned_cols=255 Identities=16% Similarity=0.179 Sum_probs=170.2
Q ss_pred cccccCCCCCCccceeecCcccCCceeecccccccccCChhhHHHHHHHHHcCCeEEecCCcc-----------------
Q 015722 83 RPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWAT----------------- 145 (402)
Q Consensus 83 ~pr~l~~~~~~d~st~i~G~~l~~Pi~iAPm~~~~~~~~~ge~ala~aa~~~G~~~~vs~~~~----------------- 145 (402)
.|..|-.++++|.+++.-|++...|+.++.-. |-...++.+.|-..|-++.+.-...
T Consensus 91 ~~k~~~~l~~ie~~vd~~G~k~~npf~~~s~P------p~t~~~lm~raf~~gwg~l~~kt~~ld~~kV~nv~prvar~~ 164 (471)
T KOG1799|consen 91 GLKALLYLKSIEELVDWDGQKPANPFHQKSKP------PPTIAELMDRAFPSGWGYLEQKTKILDENKVRNVEPRVARSP 164 (471)
T ss_pred chhhhcchhhhhhhccccCccCCCccccCCCC------CCccHHHHHhhhhcccchhheeeeecchhhheecccceeecc
Confidence 35556677889999999999999999885421 2224567777777776665531100
Q ss_pred ----C---------CHH---------------HHhhcCCCceEE----EEeecCChhHHHHHHHHHHHcCCcEEEEecCC
Q 015722 146 ----S---------SVE---------------EVSSTGPGIRFF----QLYVTKHRNVDAQLVKRAERAGFKAIALTVDT 193 (402)
Q Consensus 146 ----~---------s~e---------------ei~~~~~~~~~~----QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~ 193 (402)
+ .+| |++...|....+ -+| +.....++.++.+++|.+.+.+|+.|
T Consensus 165 t~~~~~~p~~~i~~nielIsdr~~e~~L~~f~eLk~~~p~~imIas~Mciy---nk~~w~el~d~~eqag~d~lE~nlsc 241 (471)
T KOG1799|consen 165 TKRSCFIPKRPIPTNIELISDRKAEQYLGTFGELKNVEPVVIMIASEMCIY---NKKCWMELNDSGEQAGQDDLETNLSC 241 (471)
T ss_pred CCCCccccCCCccchhhhhccchHHHHHHHHHHhcccCCceeeehHHHHHh---hhhhHHHHhhhHHhhcccchhccCCC
Confidence 0 001 111111100000 011 23344577888888999999999988
Q ss_pred CCCCchhHHHhhhcCCCC-ccccccccccccccCCCCCchhhHHHhhhhcCCCccHHHHHHHHHccCccEEEEeccCHH-
Q 015722 194 PRLGRREADIKNRFVLPP-HLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAE- 271 (402)
Q Consensus 194 p~~g~r~~d~r~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~Pv~vK~~~~~~- 271 (402)
|.. .+. ++++ .++ .+|..+-+...|++....+|++-|...+..
T Consensus 242 phg------------m~ergmgl---------------------a~g--q~p~v~~EvC~Wi~A~~~Ip~~~kmTPNitd 286 (471)
T KOG1799|consen 242 PHG------------MCERGMGL---------------------ALG--QCPIVDCEVCGWINAKATIPMVSKMTPNITD 286 (471)
T ss_pred CCC------------Cccccccc---------------------eec--cChhhhHHHhhhhhhccccccccccCCCccc
Confidence 862 121 1111 111 256667788999999999999999876543
Q ss_pred ---HHHHHHHhCCcEEEEecCc------------------ccCCCCC-------cchHHHHHHHHHHhcCCCeEEEecCC
Q 015722 272 ---DASLAIQYGAAGIIVSNHG------------------ARQLDYV-------PATVMALEEVVQAAKGRVPVFLDGGV 323 (402)
Q Consensus 272 ---da~~a~~aGad~I~vsn~g------------------g~~~d~~-------~~~~~~l~~i~~~~~~~i~via~GGI 323 (402)
-|+.+.+.|+.+|...|.- |+.-.+| |.++..+..|++.+. ..|+.+.|||
T Consensus 287 ~revar~~~~~g~~GiaA~NTi~SvM~i~~~~~~P~~~~~~~sT~GG~S~~AvRPIAl~~V~~IA~~m~-~F~l~~~GGv 365 (471)
T KOG1799|consen 287 KREVARSVNPVGCEGIAAINTIMSVMGIDMKTLRPEPCVEGYSTPGGYSYKAVRPIALAKVMNIAKMMK-EFSLSGIGGV 365 (471)
T ss_pred ccccchhcCcccccchhhHhHHHHHhcccccccCCCcccccccCCCCccccccchHHHHHHHHHHHHhh-cCccccccCc
Confidence 4667778899988876520 1111122 334555666666653 7899999999
Q ss_pred CCHHHHHHHHHcCcCEEEEchHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHhCCCChhhhccccee
Q 015722 324 RRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 390 (402)
Q Consensus 324 ~~g~dv~kal~lGAd~V~iGr~~l~~~~~~G~~gv~~~i~~l~~el~~~m~~~G~~~i~el~~~~l~ 390 (402)
.++.|.+..|.+|++.|++++..+. +|.. .++.+-.||+..|.+.|.++|++++++.|.
T Consensus 366 Et~~~~~~Fil~Gs~~vQVCt~V~~----~~~~----~V~~~Ca~LK~~m~~~~~~ti~~~~G~SL~ 424 (471)
T KOG1799|consen 366 ETGYDAAEFILLGSNTVQVCTGVMM----HGYG----HVKTLCAELKDFMKQHNFSTIEEFRGHSLQ 424 (471)
T ss_pred ccccchhhHhhcCCcHhhhhhHHHh----cCcc----hHHHHHHHHHHHHHHcCchhhhhccCcchh
Confidence 9999999999999999999998764 3443 346778899999999999999999988654
No 93
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.99 E-value=2.4e-08 Score=93.50 Aligned_cols=172 Identities=16% Similarity=0.187 Sum_probs=119.0
Q ss_pred EEEEeecCChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCC-CC-ccccccccccccccCCCCCchhhHHH
Q 015722 160 FFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVL-PP-HLTLKNYEGLYIGKMDKTDDSGLASY 237 (402)
Q Consensus 160 ~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~-p~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (402)
.+-+.-..+.+...++++.+.+.|++.+.||+++|....-.+.++..|.- |. .+...++... .+.......|+. +
T Consensus 15 vi~vir~~~~~~a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~--~~~~~a~~aGA~-F 91 (213)
T PRK06552 15 VVAVVRGESKEEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGAGTVLDA--VTARLAILAGAQ-F 91 (213)
T ss_pred EEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCCH--HHHHHHHHcCCC-E
Confidence 44455567888889999999999999999999999866666667665521 21 1222222110 001101111212 2
Q ss_pred hhhhcCCCccHHHHHHHHHccCccEEEEeccCHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeE
Q 015722 238 VANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPV 317 (402)
Q Consensus 238 ~~~~~d~~~~~~~i~~lr~~~~~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~v 317 (402)
+ ..|.++.+.+++.++ .++|++ -|+.|+.++..+.++|+|.|.++-.+ ....+.++.++..+ +++|+
T Consensus 92 i---vsP~~~~~v~~~~~~-~~i~~i-PG~~T~~E~~~A~~~Gad~vklFPa~-------~~G~~~ik~l~~~~-p~ip~ 158 (213)
T PRK06552 92 I---VSPSFNRETAKICNL-YQIPYL-PGCMTVTEIVTALEAGSEIVKLFPGS-------TLGPSFIKAIKGPL-PQVNV 158 (213)
T ss_pred E---ECCCCCHHHHHHHHH-cCCCEE-CCcCCHHHHHHHHHcCCCEEEECCcc-------cCCHHHHHHHhhhC-CCCEE
Confidence 2 256677666777654 578875 78999999999999999999995311 12245566666655 36999
Q ss_pred EEecCCCCHHHHHHHHHcCcCEEEEchHHHH
Q 015722 318 FLDGGVRRGTDVFKALALGASGVFVGRPVPF 348 (402)
Q Consensus 318 ia~GGI~~g~dv~kal~lGAd~V~iGr~~l~ 348 (402)
++.|||. .+.+.+++++||++|.+|+.++-
T Consensus 159 ~atGGI~-~~N~~~~l~aGa~~vavgs~l~~ 188 (213)
T PRK06552 159 MVTGGVN-LDNVKDWFAAGADAVGIGGELNK 188 (213)
T ss_pred EEECCCC-HHHHHHHHHCCCcEEEEchHHhC
Confidence 9999998 89999999999999999999864
No 94
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=98.98 E-value=3.4e-08 Score=100.00 Aligned_cols=148 Identities=14% Similarity=0.105 Sum_probs=94.5
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCCccHHHHH
Q 015722 173 AQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVK 252 (402)
Q Consensus 173 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~ 252 (402)
.+.+++|+++||++|.|+..+.+ +.+.|-.|. .+.+ ++.-| +. + +....+..+.++
T Consensus 153 ~~AA~ra~~aGfDgVEih~ahGy-------Ll~QFlSp~-~N~R------------tD~yG-Gs-l--enR~Rf~~eii~ 208 (370)
T cd02929 153 VDAALRARDAGFDIVYVYAAHGY-------LPLQFLLPR-YNKR------------TDEYG-GS-L--ENRARFWRETLE 208 (370)
T ss_pred HHHHHHHHHcCCCEEEEcccccc-------hHHHhhCcc-ccCC------------ccccC-CC-h--HhhhHHHHHHHH
Confidence 44556778899999999988754 233442221 1110 01001 00 1 123456789999
Q ss_pred HHHHccC--ccEEEEec----------cCHHHH----HHHHHhCCcEEEEecCcccC-----CCC--CcchHHHHHHHHH
Q 015722 253 WLQTITS--LPILVKGV----------LTAEDA----SLAIQYGAAGIIVSNHGARQ-----LDY--VPATVMALEEVVQ 309 (402)
Q Consensus 253 ~lr~~~~--~Pv~vK~~----------~~~~da----~~a~~aGad~I~vsn~gg~~-----~d~--~~~~~~~l~~i~~ 309 (402)
.+|+.++ .||.+|.. .+.+++ +.+.+ .+|.|.++.. ... ... ....++...++++
T Consensus 209 aIr~~vg~~~~v~vRls~~~~~~~~g~~~~~e~~~~~~~l~~-~~D~i~vs~g-~~~~~~~~~~~~~~~~~~~~~~~ik~ 286 (370)
T cd02929 209 DTKDAVGDDCAVATRFSVDELIGPGGIESEGEGVEFVEMLDE-LPDLWDVNVG-DWANDGEDSRFYPEGHQEPYIKFVKQ 286 (370)
T ss_pred HHHHHcCCCceEEEEecHHHhcCCCCCCCHHHHHHHHHHHHh-hCCEEEecCC-CccccccccccCCccccHHHHHHHHH
Confidence 9999984 56777754 134432 34443 4899988642 110 000 1112456677777
Q ss_pred HhcCCCeEEEecCCCCHHHHHHHHHcC-cCEEEEchHHHH
Q 015722 310 AAKGRVPVFLDGGVRRGTDVFKALALG-ASGVFVGRPVPF 348 (402)
Q Consensus 310 ~~~~~i~via~GGI~~g~dv~kal~lG-Ad~V~iGr~~l~ 348 (402)
.+ ++|||++|||++++++.++|..| ||+|++||+++.
T Consensus 287 ~~--~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~la 324 (370)
T cd02929 287 VT--SKPVVGVGRFTSPDKMVEVVKSGILDLIGAARPSIA 324 (370)
T ss_pred HC--CCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhhh
Confidence 76 79999999999999999999987 999999999985
No 95
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=98.88 E-value=9.4e-08 Score=89.10 Aligned_cols=170 Identities=18% Similarity=0.201 Sum_probs=113.7
Q ss_pred EeecCChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhc
Q 015722 163 LYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQI 242 (402)
Q Consensus 163 Ly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (402)
+.-..+.+...+.++.+.+.|++.+.||.++|..-...+.++..+..+-.+...++...+ ........++. ++ .
T Consensus 15 v~r~~~~~~~~~~~~a~~~gGi~~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~~--~~~~a~~aGA~-fi---v 88 (206)
T PRK09140 15 ILRGITPDEALAHVGALIEAGFRAIEIPLNSPDPFDSIAALVKALGDRALIGAGTVLSPE--QVDRLADAGGR-LI---V 88 (206)
T ss_pred EEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHcCCCcEEeEEecCCHH--HHHHHHHcCCC-EE---E
Confidence 444667888889999999999999999999986544556666555322222222221100 00000011111 11 2
Q ss_pred CCCccHHHHHHHHHccCccEEEEeccCHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecC
Q 015722 243 DRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGG 322 (402)
Q Consensus 243 d~~~~~~~i~~lr~~~~~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GG 322 (402)
.|..+.+.++..+ ..+.|++ -++.|++++..+.++|+|.|.++-. ....++.++.+++.+++++|+++.||
T Consensus 89 sp~~~~~v~~~~~-~~~~~~~-~G~~t~~E~~~A~~~Gad~vk~Fpa-------~~~G~~~l~~l~~~~~~~ipvvaiGG 159 (206)
T PRK09140 89 TPNTDPEVIRRAV-ALGMVVM-PGVATPTEAFAALRAGAQALKLFPA-------SQLGPAGIKALRAVLPPDVPVFAVGG 159 (206)
T ss_pred CCCCCHHHHHHHH-HCCCcEE-cccCCHHHHHHHHHcCCCEEEECCC-------CCCCHHHHHHHHhhcCCCCeEEEECC
Confidence 3445555555544 4566665 5689999999999999999998431 12336677777776644699999999
Q ss_pred CCCHHHHHHHHHcCcCEEEEchHHHH
Q 015722 323 VRRGTDVFKALALGASGVFVGRPVPF 348 (402)
Q Consensus 323 I~~g~dv~kal~lGAd~V~iGr~~l~ 348 (402)
| +.+++...+++||++|.+++.++.
T Consensus 160 I-~~~n~~~~~~aGa~~vav~s~l~~ 184 (206)
T PRK09140 160 V-TPENLAPYLAAGAAGFGLGSALYR 184 (206)
T ss_pred C-CHHHHHHHHHCCCeEEEEehHhcc
Confidence 9 689999999999999999998864
No 96
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=98.87 E-value=7.1e-08 Score=96.60 Aligned_cols=224 Identities=22% Similarity=0.288 Sum_probs=132.2
Q ss_pred eeecCcccCCceeecccccccccCChh------hHHHHHHHHHcCCeEEecCCccC--------------CHHH------
Q 015722 97 TTVLGFNISMPIMIAPTAFQKMAHPEG------ECATARAASAAGTIMTLSSWATS--------------SVEE------ 150 (402)
Q Consensus 97 t~i~G~~l~~Pi~iAPm~~~~~~~~~g------e~ala~aa~~~G~~~~vs~~~~~--------------s~ee------ 150 (402)
.+|.+.++++-|++|||+.. ...++| .+..-+.-++-|+.+++++.... +.+.
T Consensus 6 ~~ig~~~lkNRiv~apm~~~-~~~~~g~~~~~~~~~yy~~rA~GG~Glii~~~~~v~~~~~~~~~~~~i~~d~~i~~~k~ 84 (341)
T PF00724_consen 6 LKIGNLTLKNRIVMAPMTTN-MADPDGGVPTDRLIAYYERRAKGGAGLIITEATAVSPEGRGFPGQPGIWDDEQIPGLKK 84 (341)
T ss_dssp EEETTEEESSSEEE----SS-TSCTTTTBCHHHHHHHHHHHHHTTTSEEEEEEEESSGGGSSSTTSEBSSSHHHHHHHHH
T ss_pred eeECCEEecCCeEECCCCCC-CcccCCCCcHHHHHHHHHHHhhcCCceEEecccccccccccccccchhchhhHHHHHHH
Confidence 56888999999999999643 233333 34555556666777777544211 1111
Q ss_pred Hhh---cCCCceEEEEee----------------cC-------------------Chh-------HHHHHHHHHHHcCCc
Q 015722 151 VSS---TGPGIRFFQLYV----------------TK-------------------HRN-------VDAQLVKRAERAGFK 185 (402)
Q Consensus 151 i~~---~~~~~~~~QLy~----------------~~-------------------d~~-------~~~~~l~ra~~~G~~ 185 (402)
+++ ..+...++||.. +. +.+ ...+..++|+++||+
T Consensus 85 l~~~vh~~Ga~i~~QL~H~G~~~~~~~~~~~~~~psa~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~~AA~~A~~AGfD 164 (341)
T PF00724_consen 85 LADAVHAHGAKIIAQLWHAGRQANPEYSGDPPVGPSAPSALPSPIKFMGYPPREMTEEEIEEIIEDFAQAARRAKEAGFD 164 (341)
T ss_dssp HHHHHHHTTSEEEEEEE--GGGSSGCCSGGGCEESSCSSSSSTTTTETSCEEEE--HHHHHHHHHHHHHHHHHHHHTT-S
T ss_pred HHHHHHhcCccceeeccccccccCcccCCCCccCcccccccCcccccCCCCCeeCCHHHHHHHHHHHHHHHHHHHHhccC
Confidence 222 122455677652 00 011 123445778889999
Q ss_pred EEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhh-cCCCccHHHHHHHHHcc--CccE
Q 015722 186 AIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQ-IDRSLNWKDVKWLQTIT--SLPI 262 (402)
Q Consensus 186 ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~i~~lr~~~--~~Pv 262 (402)
++.|+..+-+ +-+.|--|. .+.+ ++. |-++. .-..+..+.|+.+|+.+ +.||
T Consensus 165 GVEIH~ahGy-------Ll~qFLSp~-~N~R------------tDe-----YGGs~ENR~Rf~~Eii~aIr~~vg~d~~v 219 (341)
T PF00724_consen 165 GVEIHAAHGY-------LLSQFLSPL-TNRR------------TDE-----YGGSLENRARFLLEIIEAIREAVGPDFPV 219 (341)
T ss_dssp EEEEEESTTS-------HHHHHHSTT-T---------------SST-----TSSSHHHHHHHHHHHHHHHHHHHTGGGEE
T ss_pred eEeecccchh-------hhhheeeec-cCCC------------chh-----hhhhhchhhHHHHHHHHHHHHHhcCCceE
Confidence 9999987643 334442221 1111 110 11100 01235678999999987 5789
Q ss_pred EEEecc--------CHHH----HHHHHHhCCcEEEEecCcccC-------CCC--Cc-chHHHHHHHHHHhcCCCeEEEe
Q 015722 263 LVKGVL--------TAED----ASLAIQYGAAGIIVSNHGARQ-------LDY--VP-ATVMALEEVVQAAKGRVPVFLD 320 (402)
Q Consensus 263 ~vK~~~--------~~~d----a~~a~~aGad~I~vsn~gg~~-------~d~--~~-~~~~~l~~i~~~~~~~i~via~ 320 (402)
.+|... +.++ ++.+.++|+|.+.++...+.. ... .+ ..+.....+++.+ ++|||++
T Consensus 220 ~~Rls~~~~~~~g~~~~e~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ik~~~--~~pvi~~ 297 (341)
T PF00724_consen 220 GVRLSPDDFVEGGITLEETIEIAKLLEELGVDFLDVSHGSYVHWSEPRPSPPFDFEPGYNLDLAEAIKKAV--KIPVIGV 297 (341)
T ss_dssp EEEEETTCSSTTSHHSHHHHHHHHHHHHHHHTTEEEEEESEEEEEBTSSTTTTTTTTTTTHHHHHHHHHHH--SSEEEEE
T ss_pred EEEEeeecccCCCCchHHHHHHHHHHHHHhhhhccccccccccccccccccccccccchhhhhhhhhhhhc--CceEEEE
Confidence 999762 1222 577889999998776321110 011 11 1245566777777 7999999
Q ss_pred cCCCCHHHHHHHHHcC-cCEEEEchHHHH
Q 015722 321 GGVRRGTDVFKALALG-ASGVFVGRPVPF 348 (402)
Q Consensus 321 GGI~~g~dv~kal~lG-Ad~V~iGr~~l~ 348 (402)
|||++++.+.++++.| ||+|.+||+++.
T Consensus 298 G~i~~~~~ae~~l~~g~~DlV~~gR~~la 326 (341)
T PF00724_consen 298 GGIRTPEQAEKALEEGKADLVAMGRPLLA 326 (341)
T ss_dssp SSTTHHHHHHHHHHTTSTSEEEESHHHHH
T ss_pred eeecchhhhHHHHhcCCceEeeccHHHHh
Confidence 9999999999999988 999999999986
No 97
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=98.85 E-value=8.7e-08 Score=89.73 Aligned_cols=79 Identities=19% Similarity=0.241 Sum_probs=59.4
Q ss_pred cCHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHH
Q 015722 268 LTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVP 347 (402)
Q Consensus 268 ~~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l 347 (402)
.+.++++.+.+.|+|.+.+++..++ ...+.++.+.++++.++.++||++.|||.+++|+.+++.+||++|.+|++++
T Consensus 129 ~~~~e~~~~~~~g~~~i~~t~~~~~---~~~~~~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~Ga~gvivGsai~ 205 (217)
T cd00331 129 HDEEELERALALGAKIIGINNRDLK---TFEVDLNTTERLAPLIPKDVILVSESGISTPEDVKRLAEAGADAVLIGESLM 205 (217)
T ss_pred CCHHHHHHHHHcCCCEEEEeCCCcc---ccCcCHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcCCCEEEECHHHc
Confidence 5667777777777777766432211 1233456777777765447899999999999999999999999999999987
Q ss_pred Hh
Q 015722 348 FS 349 (402)
Q Consensus 348 ~~ 349 (402)
..
T Consensus 206 ~~ 207 (217)
T cd00331 206 RA 207 (217)
T ss_pred CC
Confidence 53
No 98
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=98.77 E-value=9.8e-08 Score=91.60 Aligned_cols=98 Identities=27% Similarity=0.301 Sum_probs=81.3
Q ss_pred HHHHHHHHHccCccEEEEeccCHHHHHHHHHhCCcEEEEecCcccCC------------------------C------CC
Q 015722 248 WKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQL------------------------D------YV 297 (402)
Q Consensus 248 ~~~i~~lr~~~~~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~~~------------------------d------~~ 297 (402)
.+.+..+|..++.|+ +-++.|.+++.++.+.|+|.|-...+|++.- . ..
T Consensus 101 ~~~~~~iK~~~~~l~-MAD~stleEal~a~~~Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~ 179 (283)
T cd04727 101 DEEHHIDKHKFKVPF-VCGARNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEI 179 (283)
T ss_pred HHHHHHHHHHcCCcE-EccCCCHHHHHHHHHCCCCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhccc
Confidence 356788888777666 5789999999999999999998877666532 0 12
Q ss_pred cchHHHHHHHHHHhcCCCeEE--EecCCCCHHHHHHHHHcCcCEEEEchHHHH
Q 015722 298 PATVMALEEVVQAAKGRVPVF--LDGGVRRGTDVFKALALGASGVFVGRPVPF 348 (402)
Q Consensus 298 ~~~~~~l~~i~~~~~~~i~vi--a~GGI~~g~dv~kal~lGAd~V~iGr~~l~ 348 (402)
.+.++.|.++++.+ ++||+ +.|||.|++++.+++.+||++|.+|+.++.
T Consensus 180 ~~d~elLk~l~~~~--~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~ 230 (283)
T cd04727 180 QAPYELVKETAKLG--RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK 230 (283)
T ss_pred CCCHHHHHHHHHhc--CCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhc
Confidence 35678899998876 69997 999999999999999999999999998874
No 99
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=98.77 E-value=7.2e-07 Score=85.88 Aligned_cols=156 Identities=19% Similarity=0.225 Sum_probs=98.1
Q ss_pred cCChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCC
Q 015722 166 TKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRS 245 (402)
Q Consensus 166 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 245 (402)
..|.+.+.++++...+.|++.|.+. .|.. -.+-.+.... .+....+.......
T Consensus 20 ~P~~~~~~~~~~~l~~~Gad~iElG--iPfs----------DP~aDGpvIq---------------~a~~~al~~G~~~~ 72 (256)
T TIGR00262 20 DPTLETSLEIIKTLIEAGADALELG--VPFS----------DPLADGPTIQ---------------AADLRALRAGMTPE 72 (256)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEC--CCCC----------CCCCcCHHHH---------------HHHHHHHHcCCCHH
Confidence 3467788899999999999999874 3421 0000111110 00111222111222
Q ss_pred ccHHHHHHHHHc-cCccEEEEeccCH-------HHHHHHHHhCCcEEEEec---------------Ccc---------cC
Q 015722 246 LNWKDVKWLQTI-TSLPILVKGVLTA-------EDASLAIQYGAAGIIVSN---------------HGA---------RQ 293 (402)
Q Consensus 246 ~~~~~i~~lr~~-~~~Pv~vK~~~~~-------~da~~a~~aGad~I~vsn---------------~gg---------~~ 293 (402)
..++.++++|+. .++|++.=+..++ +-++.+.++|+|+|++.. +|- +.
T Consensus 73 ~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~ 152 (256)
T TIGR00262 73 KCFELLKKVRQKHPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNAD 152 (256)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence 356778899876 6888763333333 347888899999988831 110 00
Q ss_pred ----------CC-----------CC------cchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHH
Q 015722 294 ----------LD-----------YV------PATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPV 346 (402)
Q Consensus 294 ----------~d-----------~~------~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~ 346 (402)
.+ .| +...+.+.++++.. +.||++.|||++++++.+++..|||+|.+|+.+
T Consensus 153 ~eri~~i~~~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~--~~pi~vgfGI~~~e~~~~~~~~GADgvVvGSai 230 (256)
T TIGR00262 153 DERLKQIAEKSQGFVYLVSRAGVTGARNRAASALNELVKRLKAYS--AKPVLVGFGISKPEQVKQAIDAGADGVIVGSAI 230 (256)
T ss_pred HHHHHHHHHhCCCCEEEEECCCCCCCcccCChhHHHHHHHHHhhc--CCCEEEeCCCCCHHHHHHHHHcCCCEEEECHHH
Confidence 00 11 12345566666654 679999999999999999999999999999998
Q ss_pred HHhh
Q 015722 347 PFSL 350 (402)
Q Consensus 347 l~~~ 350 (402)
+.-+
T Consensus 231 v~~~ 234 (256)
T TIGR00262 231 VKII 234 (256)
T ss_pred HHHH
Confidence 7654
No 100
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=98.77 E-value=2.9e-07 Score=88.82 Aligned_cols=81 Identities=22% Similarity=0.261 Sum_probs=59.2
Q ss_pred eccCHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchH
Q 015722 266 GVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRP 345 (402)
Q Consensus 266 ~~~~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~ 345 (402)
.+.+.++++++.++|+|.|.++| +.+..-.+.++...++.+.+++.+++|+.|||.+++|+.+++.+|||+|.||+.
T Consensus 166 evh~~~E~~~A~~~gadiIgin~---rdl~~~~~d~~~~~~l~~~~p~~~~vIaegGI~t~ed~~~~~~~Gad~vlVGsa 242 (260)
T PRK00278 166 EVHDEEELERALKLGAPLIGINN---RNLKTFEVDLETTERLAPLIPSDRLVVSESGIFTPEDLKRLAKAGADAVLVGES 242 (260)
T ss_pred EeCCHHHHHHHHHcCCCEEEECC---CCcccccCCHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHHcCCCEEEECHH
Confidence 34566677777777777666632 222222334666677776665457999999999999999999999999999999
Q ss_pred HHHh
Q 015722 346 VPFS 349 (402)
Q Consensus 346 ~l~~ 349 (402)
++.+
T Consensus 243 I~~~ 246 (260)
T PRK00278 243 LMRA 246 (260)
T ss_pred HcCC
Confidence 8853
No 101
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=98.75 E-value=2.6e-07 Score=85.81 Aligned_cols=171 Identities=16% Similarity=0.178 Sum_probs=116.0
Q ss_pred EEEEeecCChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCC-ccccccccccccccCCCCCchhhHHHh
Q 015722 160 FFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPP-HLTLKNYEGLYIGKMDKTDDSGLASYV 238 (402)
Q Consensus 160 ~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (402)
.+-+.-..+.+...+.++.+.+.|++.+.||+++|..-.-.+.++..| |. .+...++... .+.+.....|+. ++
T Consensus 10 liaVlr~~~~e~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~--~~~~vGAGTVl~~--~~a~~a~~aGA~-Fi 84 (204)
T TIGR01182 10 IVPVIRIDDVDDALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEV--PDALIGAGTVLNP--EQLRQAVDAGAQ-FI 84 (204)
T ss_pred EEEEEecCCHHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHC--CCCEEEEEeCCCH--HHHHHHHHcCCC-EE
Confidence 344444668888889999999999999999999987655556666554 32 1223322111 000001111111 22
Q ss_pred hhhcCCCccHHHHHHHHHccCccEEEEeccCHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEE
Q 015722 239 ANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVF 318 (402)
Q Consensus 239 ~~~~d~~~~~~~i~~lr~~~~~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~vi 318 (402)
..|.++.+.+++.++ .++|++ -|++|+.++..|.++|+|.|.++-.+ .-+|+. .++.++..+ ++++++
T Consensus 85 ---vsP~~~~~v~~~~~~-~~i~~i-PG~~TptEi~~A~~~Ga~~vKlFPA~---~~GG~~---yikal~~pl-p~i~~~ 152 (204)
T TIGR01182 85 ---VSPGLTPELAKHAQD-HGIPII-PGVATPSEIMLALELGITALKLFPAE---VSGGVK---MLKALAGPF-PQVRFC 152 (204)
T ss_pred ---ECCCCCHHHHHHHHH-cCCcEE-CCCCCHHHHHHHHHCCCCEEEECCch---hcCCHH---HHHHHhccC-CCCcEE
Confidence 256667666777655 578875 59999999999999999999996421 112344 444444445 479999
Q ss_pred EecCCCCHHHHHHHHHcCcCEEEEchHHHH
Q 015722 319 LDGGVRRGTDVFKALALGASGVFVGRPVPF 348 (402)
Q Consensus 319 a~GGI~~g~dv~kal~lGAd~V~iGr~~l~ 348 (402)
++|||. .+.+.++|++||.+|++|+.++-
T Consensus 153 ptGGV~-~~N~~~~l~aGa~~vg~Gs~L~~ 181 (204)
T TIGR01182 153 PTGGIN-LANVRDYLAAPNVACGGGSWLVP 181 (204)
T ss_pred ecCCCC-HHHHHHHHhCCCEEEEEChhhcC
Confidence 999998 59999999999999999998763
No 102
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=98.71 E-value=3.9e-07 Score=86.02 Aligned_cols=102 Identities=24% Similarity=0.416 Sum_probs=78.5
Q ss_pred ccHHHHHHHHHccCccEEEEe-ccCHHHHHHHHHhCCcEEEEecC---------------cc------------------
Q 015722 246 LNWKDVKWLQTITSLPILVKG-VLTAEDASLAIQYGAAGIIVSNH---------------GA------------------ 291 (402)
Q Consensus 246 ~~~~~i~~lr~~~~~Pv~vK~-~~~~~da~~a~~aGad~I~vsn~---------------gg------------------ 291 (402)
..++.++.+++.+++|+++.+ +.++++++.+.+.|||.|++... |.
T Consensus 60 ~~~~~i~~i~~~~~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~ 139 (234)
T cd04732 60 VNLELIEEIVKAVGIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAAVKNPELVKELLKEYGGERIVVGLDAKDGKVATKG 139 (234)
T ss_pred CCHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEEECchHHhChHHHHHHHHHcCCceEEEEEEeeCCEEEECC
Confidence 356778888888888988875 57888999888999998887420 11
Q ss_pred ----cCC------------------------C--CCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEE
Q 015722 292 ----RQL------------------------D--YVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVF 341 (402)
Q Consensus 292 ----~~~------------------------d--~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~ 341 (402)
+.. + ...+.++.+.++++.+ ++||++.|||++.+|+.+++..||++|+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~ga~~iii~~~~~~g~~~g~~~~~i~~i~~~~--~ipvi~~GGi~~~~di~~~~~~Ga~gv~ 217 (234)
T cd04732 140 WLETSEVSLEELAKRFEELGVKAIIYTDISRDGTLSGPNFELYKELAAAT--GIPVIASGGVSSLDDIKALKELGVAGVI 217 (234)
T ss_pred CeeecCCCHHHHHHHHHHcCCCEEEEEeecCCCccCCCCHHHHHHHHHhc--CCCEEEecCCCCHHHHHHHHHCCCCEEE
Confidence 000 0 0113467778777766 7999999999999999999999999999
Q ss_pred EchHHHHh
Q 015722 342 VGRPVPFS 349 (402)
Q Consensus 342 iGr~~l~~ 349 (402)
+||.++.+
T Consensus 218 vg~~~~~~ 225 (234)
T cd04732 218 VGKALYEG 225 (234)
T ss_pred EeHHHHcC
Confidence 99998864
No 103
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=98.71 E-value=1.9e-06 Score=78.82 Aligned_cols=87 Identities=18% Similarity=0.176 Sum_probs=72.5
Q ss_pred cCccEEEEeccCHHHHHHHHHhCCcEEEEecCcccCC--CCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHc
Q 015722 258 TSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQL--DYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALAL 335 (402)
Q Consensus 258 ~~~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~~~--d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~l 335 (402)
.+.-+.+-.+.+.|++..|.++|+|.|-..-+|.+.. ....+.++.++++.+ . +++||+.|.+.|++++.+++..
T Consensus 125 ~~~~l~MAD~St~ee~l~a~~~G~D~IGTTLsGYT~~~~~~~~pDf~lvk~l~~-~--~~~vIAEGr~~tP~~Ak~a~~~ 201 (229)
T COG3010 125 YPGQLAMADCSTFEEGLNAHKLGFDIIGTTLSGYTGYTEKPTEPDFQLVKQLSD-A--GCRVIAEGRYNTPEQAKKAIEI 201 (229)
T ss_pred cCCcEEEeccCCHHHHHHHHHcCCcEEecccccccCCCCCCCCCcHHHHHHHHh-C--CCeEEeeCCCCCHHHHHHHHHh
Confidence 3566888999999999999999999997765665532 223456788888776 3 7999999999999999999999
Q ss_pred CcCEEEEchHHH
Q 015722 336 GASGVFVGRPVP 347 (402)
Q Consensus 336 GAd~V~iGr~~l 347 (402)
||++|.+|+++-
T Consensus 202 Ga~aVvVGsAIT 213 (229)
T COG3010 202 GADAVVVGSAIT 213 (229)
T ss_pred CCeEEEECcccC
Confidence 999999999764
No 104
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.68 E-value=5.6e-07 Score=84.62 Aligned_cols=172 Identities=14% Similarity=0.140 Sum_probs=116.0
Q ss_pred EEEEeecCChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcC--CCC-ccccccccccccccCCCCCchhhHH
Q 015722 160 FFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFV--LPP-HLTLKNYEGLYIGKMDKTDDSGLAS 236 (402)
Q Consensus 160 ~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~--~p~-~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (402)
.+-+.-..|.+...++++.+.+.|++.+.||+++|..-...++++..|. .|. .+...++.+. .+.......|+.
T Consensus 17 vi~Vvr~~~~~~a~~~~~al~~gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~--e~a~~a~~aGA~- 93 (222)
T PRK07114 17 MVPVFYHADVEVAKKVIKACYDGGARVFEFTNRGDFAHEVFAELVKYAAKELPGMILGVGSIVDA--ATAALYIQLGAN- 93 (222)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeEeCcCH--HHHHHHHHcCCC-
Confidence 3444556788888999999999999999999999986555556654332 231 1222222110 000001111111
Q ss_pred HhhhhcCCCccHHHHHHHHHccCccEEEEeccCHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCe
Q 015722 237 YVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVP 316 (402)
Q Consensus 237 ~~~~~~d~~~~~~~i~~lr~~~~~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~ 316 (402)
++ ..|.++-+.++..++ .++|++ -|++|+.++..|.++|++.|.++-.+ ..|+ ..++.+...+ ++++
T Consensus 94 Fi---VsP~~~~~v~~~~~~-~~i~~i-PG~~TpsEi~~A~~~Ga~~vKlFPA~----~~G~---~~ikal~~p~-p~i~ 160 (222)
T PRK07114 94 FI---VTPLFNPDIAKVCNR-RKVPYS-PGCGSLSEIGYAEELGCEIVKLFPGS----VYGP---GFVKAIKGPM-PWTK 160 (222)
T ss_pred EE---ECCCCCHHHHHHHHH-cCCCEe-CCCCCHHHHHHHHHCCCCEEEECccc----ccCH---HHHHHHhccC-CCCe
Confidence 22 256677677777765 478775 79999999999999999999996321 1233 3444444444 3799
Q ss_pred EEEecCCCC-HHHHHHHHHcCcCEEEEchHHH
Q 015722 317 VFLDGGVRR-GTDVFKALALGASGVFVGRPVP 347 (402)
Q Consensus 317 via~GGI~~-g~dv~kal~lGAd~V~iGr~~l 347 (402)
++++|||.- .+++..++.+|+.+|++|+.++
T Consensus 161 ~~ptGGV~~~~~n~~~yl~aGa~avg~Gs~L~ 192 (222)
T PRK07114 161 IMPTGGVEPTEENLKKWFGAGVTCVGMGSKLI 192 (222)
T ss_pred EEeCCCCCcchhcHHHHHhCCCEEEEEChhhc
Confidence 999999995 4899999999999999999775
No 105
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=98.68 E-value=2.4e-07 Score=88.96 Aligned_cols=98 Identities=27% Similarity=0.261 Sum_probs=81.0
Q ss_pred HHHHHHHHHccCccEEEEeccCHHHHHHHHHhCCcEEEEecCcccCC---------------------C----------C
Q 015722 248 WKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQL---------------------D----------Y 296 (402)
Q Consensus 248 ~~~i~~lr~~~~~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~~~---------------------d----------~ 296 (402)
.+.+..+|+.++.|++ -++.+.++|.++.+.|+|.|-..+.||+.- . .
T Consensus 103 de~~~~~K~~f~vpfm-ad~~~l~EAlrai~~GadmI~Tt~e~gTg~v~~av~hlr~~~~~~~~~~~~~~~~~~~~~a~~ 181 (287)
T TIGR00343 103 DWTFHIDKKKFKVPFV-CGARDLGEALRRINEGAAMIRTKGEAGTGNIVEAVRHMRKINEEIRQIQNMLEEEDLAAVAKE 181 (287)
T ss_pred HHHHHHHHHHcCCCEE-ccCCCHHHHHHHHHCCCCEEeccccCCCccHHHHHHHHHHHHHHHHHHhcccchhHHhhhhcc
Confidence 3557777888888774 788999999999999999999877766531 0 0
Q ss_pred CcchHHHHHHHHHHhcCCCeEE--EecCCCCHHHHHHHHHcCcCEEEEchHHHH
Q 015722 297 VPATVMALEEVVQAAKGRVPVF--LDGGVRRGTDVFKALALGASGVFVGRPVPF 348 (402)
Q Consensus 297 ~~~~~~~l~~i~~~~~~~i~vi--a~GGI~~g~dv~kal~lGAd~V~iGr~~l~ 348 (402)
-.+.++.|.++++.. ++||+ +.|||.|++|+.+++.+||++|.+|+.+..
T Consensus 182 ~~~~~elLkei~~~~--~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~k 233 (287)
T TIGR00343 182 LRVPVELLLEVLKLG--KLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK 233 (287)
T ss_pred cCCCHHHHHHHHHhC--CCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhc
Confidence 125678888888865 79998 999999999999999999999999998764
No 106
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=98.66 E-value=8.3e-07 Score=81.61 Aligned_cols=168 Identities=19% Similarity=0.226 Sum_probs=104.7
Q ss_pred EEEeecCChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCC-ccccccccccccccCCCCCchhhHHHhh
Q 015722 161 FQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPP-HLTLKNYEGLYIGKMDKTDDSGLASYVA 239 (402)
Q Consensus 161 ~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (402)
+-++-..+.+...+.++.+.+.|++.+.+++..+..-.-.+.++..+ |. .+...++... ..+......+. .++
T Consensus 7 ~~i~r~~~~~~~~~~~~~l~~~G~~~vev~~~~~~~~~~i~~l~~~~--~~~~iGag~v~~~--~~~~~a~~~Ga-~~i- 80 (190)
T cd00452 7 VAVLRGDDAEDALALAEALIEGGIRAIEITLRTPGALEAIRALRKEF--PEALIGAGTVLTP--EQADAAIAAGA-QFI- 80 (190)
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHC--CCCEEEEEeCCCH--HHHHHHHHcCC-CEE-
Confidence 33444567778888888888999999999988765322223444333 21 1122121100 00000000000 011
Q ss_pred hhcCCCccHHHHHHHHHccCccEEEEeccCHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEE
Q 015722 240 NQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFL 319 (402)
Q Consensus 240 ~~~d~~~~~~~i~~lr~~~~~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via 319 (402)
.-|..+.+.++. ++..+.|+++ ++.|++++..|.++|+|.|.++.. .+...+.+..+++.++ ++|+++
T Consensus 81 --~~p~~~~~~~~~-~~~~~~~~i~-gv~t~~e~~~A~~~Gad~i~~~p~-------~~~g~~~~~~l~~~~~-~~p~~a 148 (190)
T cd00452 81 --VSPGLDPEVVKA-ANRAGIPLLP-GVATPTEIMQALELGADIVKLFPA-------EAVGPAYIKALKGPFP-QVRFMP 148 (190)
T ss_pred --EcCCCCHHHHHH-HHHcCCcEEC-CcCCHHHHHHHHHCCCCEEEEcCC-------cccCHHHHHHHHhhCC-CCeEEE
Confidence 122333344444 4445777765 778999999999999999998531 1223456666655542 599999
Q ss_pred ecCCCCHHHHHHHHHcCcCEEEEchHHH
Q 015722 320 DGGVRRGTDVFKALALGASGVFVGRPVP 347 (402)
Q Consensus 320 ~GGI~~g~dv~kal~lGAd~V~iGr~~l 347 (402)
.||| +.+++.+++.+||++|.+++.+.
T Consensus 149 ~GGI-~~~n~~~~~~~G~~~v~v~s~i~ 175 (190)
T cd00452 149 TGGV-SLDNAAEWLAAGVVAVGGGSLLP 175 (190)
T ss_pred eCCC-CHHHHHHHHHCCCEEEEEchhcc
Confidence 9999 89999999999999999999876
No 107
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=98.65 E-value=3.1e-06 Score=81.81 Aligned_cols=157 Identities=13% Similarity=0.132 Sum_probs=96.8
Q ss_pred cCChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCC
Q 015722 166 TKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRS 245 (402)
Q Consensus 166 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 245 (402)
..|.+.+.++++...+.|++.|.|.+ |.. -.+..+.+.. .+....+.......
T Consensus 25 ~P~~~~~~~~~~~l~~~Gad~iElGi--PfS----------DP~aDGpvIq---------------~a~~rAL~~g~~~~ 77 (263)
T CHL00200 25 DPDIVITKKALKILDKKGADIIELGI--PYS----------DPLADGPIIQ---------------EASNRALKQGINLN 77 (263)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECC--CCC----------CCCccCHHHH---------------HHHHHHHHcCCCHH
Confidence 34678889999999999999998743 421 0000111110 01112222212223
Q ss_pred ccHHHHHHHHHccCccEEEEeccC------H-HHHHHHHHhCCcEEEEec---------------Ccc---------cC-
Q 015722 246 LNWKDVKWLQTITSLPILVKGVLT------A-EDASLAIQYGAAGIIVSN---------------HGA---------RQ- 293 (402)
Q Consensus 246 ~~~~~i~~lr~~~~~Pv~vK~~~~------~-~da~~a~~aGad~I~vsn---------------~gg---------~~- 293 (402)
..++.++++|+..+.|+++=+=.+ . +-.+.+.++|+|++++-. ||= +.
T Consensus 78 ~~~~~~~~~r~~~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~ 157 (263)
T CHL00200 78 KILSILSEVNGEIKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSK 157 (263)
T ss_pred HHHHHHHHHhcCCCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCH
Confidence 456788899877788976322111 1 237888999999999832 110 00
Q ss_pred ------------------CC--CCc-----c-hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHH
Q 015722 294 ------------------LD--YVP-----A-TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVP 347 (402)
Q Consensus 294 ------------------~d--~~~-----~-~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l 347 (402)
.. .|. . ..+.+.++++.. +.||.+.+||++++++.++...|||+|.+|++++
T Consensus 158 eri~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t--~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGSalv 235 (263)
T CHL00200 158 SRIQKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMT--NKPIILGFGISTSEQIKQIKGWNINGIVIGSACV 235 (263)
T ss_pred HHHHHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhc--CCCEEEECCcCCHHHHHHHHhcCCCEEEECHHHH
Confidence 00 111 1 123344555443 7999999999999999999999999999999998
Q ss_pred Hhhh
Q 015722 348 FSLA 351 (402)
Q Consensus 348 ~~~~ 351 (402)
.-+.
T Consensus 236 ~~i~ 239 (263)
T CHL00200 236 QILL 239 (263)
T ss_pred HHHH
Confidence 6543
No 108
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=98.63 E-value=3.9e-07 Score=86.80 Aligned_cols=77 Identities=19% Similarity=0.265 Sum_probs=61.4
Q ss_pred HHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHc-CcCEEEEchHHHH
Q 015722 270 AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALAL-GASGVFVGRPVPF 348 (402)
Q Consensus 270 ~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~l-GAd~V~iGr~~l~ 348 (402)
.+.++.+.+.|+|.|++++..... ......++.+.++.+.+ ++||+++|||++.+|+.+++.. |||+|++||+++.
T Consensus 152 ~~~~~~l~~~G~d~i~v~~i~~~g-~~~g~~~~~i~~i~~~~--~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~ 228 (243)
T cd04731 152 VEWAKEVEELGAGEILLTSMDRDG-TKKGYDLELIRAVSSAV--NIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHF 228 (243)
T ss_pred HHHHHHHHHCCCCEEEEeccCCCC-CCCCCCHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHc
Confidence 466788999999999996421100 01223678888888776 7999999999999999999997 9999999999987
Q ss_pred h
Q 015722 349 S 349 (402)
Q Consensus 349 ~ 349 (402)
+
T Consensus 229 ~ 229 (243)
T cd04731 229 G 229 (243)
T ss_pred C
Confidence 4
No 109
>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=98.57 E-value=9.8e-07 Score=88.22 Aligned_cols=205 Identities=20% Similarity=0.205 Sum_probs=138.9
Q ss_pred cccCCceeecccccccccCChhhHHHHHHHHHcCCeEEecCCccC--CHHHHh---------------------hcCC--
Q 015722 102 FNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATS--SVEEVS---------------------STGP-- 156 (402)
Q Consensus 102 ~~l~~Pi~iAPm~~~~~~~~~ge~ala~aa~~~G~~~~vs~~~~~--s~eei~---------------------~~~~-- 156 (402)
..++.-+++|||--. |++++.-.|-+.|+-++-+..-.. -++-+. ...|
T Consensus 7 l~y~nk~iLApMvr~------G~lpmrLLal~~Gadlv~~peIVdkKLIe~ir~~NealgtIDfv~p~~~~vvfr~~~~e 80 (477)
T KOG2334|consen 7 LFYRNKLILAPMVRA------GELPMRLLALQYGADLVYTPEIVDKKLIECIRVENEALGTIDFVDPSDSTVVFRTCPAE 80 (477)
T ss_pred hhhcCcEeeehHHHh------ccchHHHHHHHhccceecChhhhhHHHHhccccccccccceeeecCCcceEEEEechhh
Confidence 446778899999432 588999999999998887643110 111110 0111
Q ss_pred -CceEEEEeecCChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhH
Q 015722 157 -GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLA 235 (402)
Q Consensus 157 -~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (402)
....||+- ..+.+...+..+.+. .-...|+++++||- .|....++...
T Consensus 81 ~~rlilQ~g-T~sa~lA~e~A~lv~-nDvsgidiN~gCpK----------~fSi~~gmgaa------------------- 129 (477)
T KOG2334|consen 81 NSRLILQIG-TASAELALEAAKLVD-NDVSGIDINMGCPK----------EFSIHGGMGAA------------------- 129 (477)
T ss_pred cCeEEEEec-CCcHHHHHHHHHHhh-cccccccccCCCCC----------ccccccCCCch-------------------
Confidence 34678875 345554444443333 34678899999994 23222222111
Q ss_pred HHhhhhcCCCccHHHHHHHHHccCccEEEEec------cCHHHHHHHHHhCCcEEEEecCcccCC--CCCcchHHHHHHH
Q 015722 236 SYVANQIDRSLNWKDVKWLQTITSLPILVKGV------LTAEDASLAIQYGAAGIIVSNHGARQL--DYVPATVMALEEV 307 (402)
Q Consensus 236 ~~~~~~~d~~~~~~~i~~lr~~~~~Pv~vK~~------~~~~da~~a~~aGad~I~vsn~gg~~~--d~~~~~~~~l~~i 307 (402)
.+ .+|+.-..++..+.+..++|+..|+. .|.+..++..+.|+.+|.| |+.+.- ..-+.+.+.+.++
T Consensus 130 -lL---t~~dkl~~IL~sLvk~~~vpvtckIR~L~s~edtL~lv~ri~~tgi~ai~v--h~rt~d~r~~~~~~~~~i~~i 203 (477)
T KOG2334|consen 130 -LL---TDPDKLVAILYSLVKGNKVPVTCKIRLLDSKEDTLKLVKRICATGIAAITV--HCRTRDERNQEPATKDYIREI 203 (477)
T ss_pred -hh---cCHHHHHHHHHHHHhcCcccceeEEEecCCcccHHHHHHHHHhcCCceEEE--EeeccccCCCCCCCHHHHHHH
Confidence 11 25655667899999999999999986 2345578889999999999 654321 1246678899999
Q ss_pred HHHhcCCCeEEEecCCCC---HHHHHHHHH-cCcCEEEEchHHHHhh
Q 015722 308 VQAAKGRVPVFLDGGVRR---GTDVFKALA-LGASGVFVGRPVPFSL 350 (402)
Q Consensus 308 ~~~~~~~i~via~GGI~~---g~dv~kal~-lGAd~V~iGr~~l~~~ 350 (402)
+..++ .+|||+.||++. +.|+.+.-. .|++.|||.|...++.
T Consensus 204 ~~~~~-~V~vi~ng~~~~~e~y~Di~~~~~~~~~~~vmiAR~A~~n~ 249 (477)
T KOG2334|consen 204 AQACQ-MVPVIVNGGSMDIEQYSDIEDFQEKTGADSVMIARAAESNP 249 (477)
T ss_pred HHHhc-cceEeeccchhhHHhhhhHHHHHHHhccchhhhhHhhhcCC
Confidence 98884 399999999999 999999887 7999999999665543
No 110
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.57 E-value=2.6e-06 Score=78.93 Aligned_cols=169 Identities=12% Similarity=0.107 Sum_probs=112.3
Q ss_pred EEEeecCChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCC-ccccccccccccccCCCCCchhhHHHhh
Q 015722 161 FQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPP-HLTLKNYEGLYIGKMDKTDDSGLASYVA 239 (402)
Q Consensus 161 ~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (402)
+-+.-..+.+...+.++.+.+.|++.+.||+++|..-.-.+.++..+ |. .+...++.+. .+.+.....|+. ++
T Consensus 7 v~Vir~~~~~~a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~--~~~~vGAGTVl~~--e~a~~ai~aGA~-Fi- 80 (201)
T PRK06015 7 IPVLLIDDVEHAVPLARALAAGGLPAIEITLRTPAALDAIRAVAAEV--EEAIVGAGTILNA--KQFEDAAKAGSR-FI- 80 (201)
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHC--CCCEEeeEeCcCH--HHHHHHHHcCCC-EE-
Confidence 33444667888889999999999999999999987554445555554 32 1222222110 000111111111 21
Q ss_pred hhcCCCccHHHHHHHHHccCccEEEEeccCHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEE
Q 015722 240 NQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFL 319 (402)
Q Consensus 240 ~~~d~~~~~~~i~~lr~~~~~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via 319 (402)
..|.++-+.+++.++ .++|++ -|++|+.++..|.++|+|.|.++-.+ .-+|+ ..++.++..+ ++++++.
T Consensus 81 --vSP~~~~~vi~~a~~-~~i~~i-PG~~TptEi~~A~~~Ga~~vK~FPa~---~~GG~---~yikal~~pl-p~~~l~p 149 (201)
T PRK06015 81 --VSPGTTQELLAAAND-SDVPLL-PGAATPSEVMALREEGYTVLKFFPAE---QAGGA---AFLKALSSPL-AGTFFCP 149 (201)
T ss_pred --ECCCCCHHHHHHHHH-cCCCEe-CCCCCHHHHHHHHHCCCCEEEECCch---hhCCH---HHHHHHHhhC-CCCcEEe
Confidence 256677677777665 578774 79999999999999999999996321 11123 3455555555 3799999
Q ss_pred ecCCCCHHHHHHHHHcCcCEEEEchHHH
Q 015722 320 DGGVRRGTDVFKALALGASGVFVGRPVP 347 (402)
Q Consensus 320 ~GGI~~g~dv~kal~lGAd~V~iGr~~l 347 (402)
+|||. .+++..+|++|+.+++.|+.+.
T Consensus 150 tGGV~-~~n~~~~l~ag~~~~~ggs~l~ 176 (201)
T PRK06015 150 TGGIS-LKNARDYLSLPNVVCVGGSWVA 176 (201)
T ss_pred cCCCC-HHHHHHHHhCCCeEEEEchhhC
Confidence 99998 6899999999988777777554
No 111
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=98.56 E-value=6e-07 Score=86.54 Aligned_cols=97 Identities=27% Similarity=0.327 Sum_probs=79.3
Q ss_pred HHHHHHHHccCccEEEEeccCHHHHHHHHHhCCcEEEEecCcccC------------------CC------------CCc
Q 015722 249 KDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQ------------------LD------------YVP 298 (402)
Q Consensus 249 ~~i~~lr~~~~~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~~------------------~d------------~~~ 298 (402)
+.+..+|..++.|++ -++.+.++|.++.+.|+|.|-..+..|+. +. .-.
T Consensus 111 ~~~~~~K~~f~~~fm-ad~~~l~EAlrai~~GadmI~Ttge~gtg~v~~av~h~r~~~~~i~~L~gyt~~~~~~~a~~~~ 189 (293)
T PRK04180 111 EEYHIDKWDFTVPFV-CGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQINGEIRRLTSMSEDELYTAAKELQ 189 (293)
T ss_pred HHHHHHHHHcCCCEE-ccCCCHHHHHHHHHCCCCeeeccCCCCCccHHHHHHHHHHHHHHHHHHhCCCHHHHHhhccccC
Confidence 567888888888874 78899999999999999999887433331 10 023
Q ss_pred chHHHHHHHHHHhcCCCeEE--EecCCCCHHHHHHHHHcCcCEEEEchHHHH
Q 015722 299 ATVMALEEVVQAAKGRVPVF--LDGGVRRGTDVFKALALGASGVFVGRPVPF 348 (402)
Q Consensus 299 ~~~~~l~~i~~~~~~~i~vi--a~GGI~~g~dv~kal~lGAd~V~iGr~~l~ 348 (402)
+.++.|.++++.. ++||+ +.|||.|++|+.+++.+||++|.+|+.++.
T Consensus 190 ~~~elL~ei~~~~--~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~k 239 (293)
T PRK04180 190 APYELVKEVAELG--RLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFK 239 (293)
T ss_pred CCHHHHHHHHHhC--CCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhc
Confidence 5678889988866 79998 999999999999999999999999998763
No 112
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=98.55 E-value=1.6e-06 Score=81.75 Aligned_cols=94 Identities=22% Similarity=0.202 Sum_probs=72.1
Q ss_pred cHHHHHHHHHccCccEEEEec-----cCHHH----HHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeE
Q 015722 247 NWKDVKWLQTITSLPILVKGV-----LTAED----ASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPV 317 (402)
Q Consensus 247 ~~~~i~~lr~~~~~Pv~vK~~-----~~~~d----a~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~v 317 (402)
..+++..+++.. .|+.+|.+ ++.++ ++.+.++|+|+|..|.. ...+..+.+.+..+++.++++++|
T Consensus 108 v~~ei~~v~~~~-~~~~lKvIlEt~~L~~e~i~~a~~~~~~agadfIKTsTG----~~~~gat~~~v~~m~~~~~~~~~I 182 (221)
T PRK00507 108 VEADIRAVVEAA-GGAVLKVIIETCLLTDEEKVKACEIAKEAGADFVKTSTG----FSTGGATVEDVKLMRETVGPRVGV 182 (221)
T ss_pred HHHHHHHHHHhc-CCceEEEEeecCcCCHHHHHHHHHHHHHhCCCEEEcCCC----CCCCCCCHHHHHHHHHHhCCCceE
Confidence 346677777765 47788985 34443 45688999998887642 123346778888888888788999
Q ss_pred EEecCCCCHHHHHHHHHcCcCEEEEchH
Q 015722 318 FLDGGVRRGTDVFKALALGASGVFVGRP 345 (402)
Q Consensus 318 ia~GGI~~g~dv~kal~lGAd~V~iGr~ 345 (402)
.++|||+|.+|+.+.+.+||+.++..+.
T Consensus 183 KasGGIrt~~~a~~~i~aGA~riGtS~~ 210 (221)
T PRK00507 183 KASGGIRTLEDALAMIEAGATRLGTSAG 210 (221)
T ss_pred EeeCCcCCHHHHHHHHHcCcceEccCcH
Confidence 9999999999999999999999877653
No 113
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=98.53 E-value=5.3e-07 Score=83.25 Aligned_cols=169 Identities=16% Similarity=0.215 Sum_probs=105.5
Q ss_pred EEeecCChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCC-ccccccccccccccCCCCCchhhHHHhhh
Q 015722 162 QLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPP-HLTLKNYEGLYIGKMDKTDDSGLASYVAN 240 (402)
Q Consensus 162 QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (402)
-+.-..+.+...++++...+.|++.+.||+++|....-.+.++..+ |. .+.+.++...+ +.+.....|+. ++
T Consensus 12 aVir~~~~~~a~~~~~al~~gGi~~iEiT~~t~~a~~~I~~l~~~~--p~~~vGAGTV~~~e--~a~~a~~aGA~-Fi-- 84 (196)
T PF01081_consen 12 AVIRGDDPEDAVPIAEALIEGGIRAIEITLRTPNALEAIEALRKEF--PDLLVGAGTVLTAE--QAEAAIAAGAQ-FI-- 84 (196)
T ss_dssp EEETTSSGGGHHHHHHHHHHTT--EEEEETTSTTHHHHHHHHHHHH--TTSEEEEES--SHH--HHHHHHHHT-S-EE--
T ss_pred EEEEcCCHHHHHHHHHHHHHCCCCEEEEecCCccHHHHHHHHHHHC--CCCeeEEEeccCHH--HHHHHHHcCCC-EE--
Confidence 3444667888889999999999999999999986544444455554 32 12222221100 00000111111 11
Q ss_pred hcCCCccHHHHHHHHHccCccEEEEeccCHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEe
Q 015722 241 QIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLD 320 (402)
Q Consensus 241 ~~d~~~~~~~i~~lr~~~~~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~ 320 (402)
..|.++.+.+++.++ .++|++ -|++|+.++..|.++|++.|.++-.+ .-+|+ ..++.++..+ ++++++++
T Consensus 85 -vSP~~~~~v~~~~~~-~~i~~i-PG~~TptEi~~A~~~G~~~vK~FPA~---~~GG~---~~ik~l~~p~-p~~~~~pt 154 (196)
T PF01081_consen 85 -VSPGFDPEVIEYARE-YGIPYI-PGVMTPTEIMQALEAGADIVKLFPAG---ALGGP---SYIKALRGPF-PDLPFMPT 154 (196)
T ss_dssp -EESS--HHHHHHHHH-HTSEEE-EEESSHHHHHHHHHTT-SEEEETTTT---TTTHH---HHHHHHHTTT-TT-EEEEB
T ss_pred -ECCCCCHHHHHHHHH-cCCccc-CCcCCHHHHHHHHHCCCCEEEEecch---hcCcH---HHHHHHhccC-CCCeEEEc
Confidence 256677677777765 477774 89999999999999999999996321 11223 4555555444 37999999
Q ss_pred cCCCCHHHHHHHHHcCcCEEEEchHHHH
Q 015722 321 GGVRRGTDVFKALALGASGVFVGRPVPF 348 (402)
Q Consensus 321 GGI~~g~dv~kal~lGAd~V~iGr~~l~ 348 (402)
|||. .+++..++.+|+.+|++|+.+.-
T Consensus 155 GGV~-~~N~~~~l~ag~~~vg~Gs~L~~ 181 (196)
T PF01081_consen 155 GGVN-PDNLAEYLKAGAVAVGGGSWLFP 181 (196)
T ss_dssp SS---TTTHHHHHTSTTBSEEEESGGGS
T ss_pred CCCC-HHHHHHHHhCCCEEEEECchhcC
Confidence 9998 58999999999999999997764
No 114
>PRK07695 transcriptional regulator TenI; Provisional
Probab=98.52 E-value=1.7e-06 Score=80.11 Aligned_cols=111 Identities=20% Similarity=0.192 Sum_probs=76.6
Q ss_pred HHHHHHccC-ccEEEEeccCHHHHHHHHHhCCcEEEEecCcccCC-C-CCcchHHHHHHHHHHhcCCCeEEEecCCCCHH
Q 015722 251 VKWLQTITS-LPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQL-D-YVPATVMALEEVVQAAKGRVPVFLDGGVRRGT 327 (402)
Q Consensus 251 i~~lr~~~~-~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~~~-d-~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~ 327 (402)
++.+|+..+ ..|.+ .+.+.++++.+.++|+|+|.++....+.. . ..+..++.+.++.+.+ ++||++.||| +.+
T Consensus 86 ~~~~r~~~~~~~ig~-s~~s~e~a~~a~~~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~--~ipvia~GGI-~~~ 161 (201)
T PRK07695 86 VRSVREKFPYLHVGY-SVHSLEEAIQAEKNGADYVVYGHVFPTDCKKGVPARGLEELSDIARAL--SIPVIAIGGI-TPE 161 (201)
T ss_pred HHHHHHhCCCCEEEE-eCCCHHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEEcCC-CHH
Confidence 344555443 33443 46788999999999999997753222211 1 1233567788887766 7999999999 899
Q ss_pred HHHHHHHcCcCEEEEchHHHHhhhcCChHHHHHHHHHHHHHHHH
Q 015722 328 DVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFEL 371 (402)
Q Consensus 328 dv~kal~lGAd~V~iGr~~l~~~~~~G~~gv~~~i~~l~~el~~ 371 (402)
++.+++.+||++|.+|+.+..+ +.+...+..+.+.++.
T Consensus 162 ~~~~~~~~Ga~gvav~s~i~~~------~~p~~~~~~~~~~~~~ 199 (201)
T PRK07695 162 NTRDVLAAGVSGIAVMSGIFSS------ANPYSKAKRYAESIKK 199 (201)
T ss_pred HHHHHHHcCCCEEEEEHHHhcC------CCHHHHHHHHHHHHhh
Confidence 9999999999999999998753 2233445555555443
No 115
>PLN02591 tryptophan synthase
Probab=98.51 E-value=1.2e-05 Score=77.21 Aligned_cols=154 Identities=18% Similarity=0.218 Sum_probs=95.8
Q ss_pred cCChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCC--CccccccccccccccCCCCCchhhHHHhhhhcC
Q 015722 166 TKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLP--PHLTLKNYEGLYIGKMDKTDDSGLASYVANQID 243 (402)
Q Consensus 166 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 243 (402)
..|.+.+.++++...+.|++.|.|. -|.. -| .+.... .+....+.....
T Consensus 12 ~P~~e~~~~~~~~l~~~Gad~iElG--iPfS------------DP~aDGpvIq---------------~a~~rAL~~G~~ 62 (250)
T PLN02591 12 DPDLDTTAEALRLLDACGADVIELG--VPYS------------DPLADGPVIQ---------------AAATRALEKGTT 62 (250)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEC--CCCC------------CCcccCHHHH---------------HHHHHHHHcCCC
Confidence 3467888999999999999999873 3421 11 111110 011112222122
Q ss_pred CCccHHHHHHHHHccCccEEEEeccC------H-HHHHHHHHhCCcEEEEec---------------Ccc---------c
Q 015722 244 RSLNWKDVKWLQTITSLPILVKGVLT------A-EDASLAIQYGAAGIIVSN---------------HGA---------R 292 (402)
Q Consensus 244 ~~~~~~~i~~lr~~~~~Pv~vK~~~~------~-~da~~a~~aGad~I~vsn---------------~gg---------~ 292 (402)
....++.++++|+..+.|+++=+=.+ . +-.+.+.++|+|++++-. ||= +
T Consensus 63 ~~~~~~~~~~~r~~~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt 142 (250)
T PLN02591 63 LDSVISMLKEVAPQLSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNGIELVLLTTPTT 142 (250)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 23356778888877788976432111 1 236778889999888831 110 0
Q ss_pred C----------------------CCC---C-cchH-HHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchH
Q 015722 293 Q----------------------LDY---V-PATV-MALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRP 345 (402)
Q Consensus 293 ~----------------------~d~---~-~~~~-~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~ 345 (402)
. ..+ + +..+ +.+.++++.. ++||+.--||++++|+.+++..|||+|.+|+.
T Consensus 143 ~~~ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~--~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGSa 220 (250)
T PLN02591 143 PTERMKAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKEVT--DKPVAVGFGISKPEHAKQIAGWGADGVIVGSA 220 (250)
T ss_pred CHHHHHHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcC--CCceEEeCCCCCHHHHHHHHhcCCCEEEECHH
Confidence 0 001 1 1222 3466666643 89999988999999999999999999999999
Q ss_pred HHHhh
Q 015722 346 VPFSL 350 (402)
Q Consensus 346 ~l~~~ 350 (402)
++.-.
T Consensus 221 lVk~i 225 (250)
T PLN02591 221 MVKAL 225 (250)
T ss_pred HHHhh
Confidence 98654
No 116
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=98.51 E-value=6.6e-07 Score=85.36 Aligned_cols=77 Identities=23% Similarity=0.249 Sum_probs=62.7
Q ss_pred HHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHH---cCcCEEEEchHH
Q 015722 270 AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALA---LGASGVFVGRPV 346 (402)
Q Consensus 270 ~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~---lGAd~V~iGr~~ 346 (402)
.+-++.+.++|++.|++.+...-+...|+ .++.+.++++.+ ++|||++|||++.+|+.+++. .||++|++||++
T Consensus 149 ~~~~~~l~~~G~~~iiv~~~~~~g~~~G~-d~~~i~~i~~~~--~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra~ 225 (241)
T PRK14024 149 WEVLERLDSAGCSRYVVTDVTKDGTLTGP-NLELLREVCART--DAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKAL 225 (241)
T ss_pred HHHHHHHHhcCCCEEEEEeecCCCCccCC-CHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHH
Confidence 35578899999999999543222223454 899999999876 799999999999999999875 499999999999
Q ss_pred HHh
Q 015722 347 PFS 349 (402)
Q Consensus 347 l~~ 349 (402)
+.+
T Consensus 226 ~~g 228 (241)
T PRK14024 226 YAG 228 (241)
T ss_pred HcC
Confidence 874
No 117
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=98.49 E-value=1.3e-05 Score=77.31 Aligned_cols=156 Identities=17% Similarity=0.199 Sum_probs=93.7
Q ss_pred cCChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCC
Q 015722 166 TKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRS 245 (402)
Q Consensus 166 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 245 (402)
..|.+.+.+.++...+.|++.|.| +.|.. -.+-.+.... .+....+.......
T Consensus 22 ~P~~~~~~~~~~~l~~~Gad~iEl--GiPfS----------DP~aDGpvIq---------------~a~~~AL~~G~~~~ 74 (258)
T PRK13111 22 DPDLETSLEIIKALVEAGADIIEL--GIPFS----------DPVADGPVIQ---------------AASLRALAAGVTLA 74 (258)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEE--CCCCC----------CCcccCHHHH---------------HHHHHHHHcCCCHH
Confidence 347788889999999999999987 33431 0000111110 00111222111222
Q ss_pred ccHHHHHHHH-HccCccEEEEecc------CH-HHHHHHHHhCCcEEEEec---------------Ccc---------cC
Q 015722 246 LNWKDVKWLQ-TITSLPILVKGVL------TA-EDASLAIQYGAAGIIVSN---------------HGA---------RQ 293 (402)
Q Consensus 246 ~~~~~i~~lr-~~~~~Pv~vK~~~------~~-~da~~a~~aGad~I~vsn---------------~gg---------~~ 293 (402)
..++.++++| +..+.|+++=+=. .. +-.+.+.++|+|++++-. ||= +.
T Consensus 75 ~~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~~gl~~I~lvap~t~ 154 (258)
T PRK13111 75 DVFELVREIREKDPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKKHGLDLIFLVAPTTT 154 (258)
T ss_pred HHHHHHHHHHhcCCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 3456788888 4457787542211 11 236778888888888731 110 00
Q ss_pred -------------------CC--CC-----cc-hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHH
Q 015722 294 -------------------LD--YV-----PA-TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPV 346 (402)
Q Consensus 294 -------------------~d--~~-----~~-~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~ 346 (402)
.. .| +. ..+.+.++++.. ++||++-+||++++|+.+++.. ||+|.+|+.+
T Consensus 155 ~eri~~i~~~s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~--~~pv~vGfGI~~~e~v~~~~~~-ADGviVGSai 231 (258)
T PRK13111 155 DERLKKIASHASGFVYYVSRAGVTGARSADAADLAELVARLKAHT--DLPVAVGFGISTPEQAAAIAAV-ADGVIVGSAL 231 (258)
T ss_pred HHHHHHHHHhCCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcC--CCcEEEEcccCCHHHHHHHHHh-CCEEEEcHHH
Confidence 00 11 11 234677777655 7999999999999999999975 9999999999
Q ss_pred HHhhh
Q 015722 347 PFSLA 351 (402)
Q Consensus 347 l~~~~ 351 (402)
+..+.
T Consensus 232 v~~~~ 236 (258)
T PRK13111 232 VKIIE 236 (258)
T ss_pred HHHHH
Confidence 87654
No 118
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.48 E-value=1e-06 Score=84.97 Aligned_cols=76 Identities=22% Similarity=0.245 Sum_probs=62.7
Q ss_pred HHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHH-HcCcCEEEEchHHHHh
Q 015722 271 EDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKAL-ALGASGVFVGRPVPFS 349 (402)
Q Consensus 271 ~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal-~lGAd~V~iGr~~l~~ 349 (402)
+.++.+.+.|++.|++.+...-+...| +.++.+.++++.+ ++|||++|||++.+|+.+++ ..|+++|.+|++|.|.
T Consensus 156 e~~~~~~~~g~~~ii~~~i~~~G~~~G-~d~~~i~~~~~~~--~ipvIasGGv~s~eD~~~l~~~~GvdgVivg~a~~~~ 232 (258)
T PRK01033 156 ELAKEYEALGAGEILLNSIDRDGTMKG-YDLELLKSFRNAL--KIPLIALGGAGSLDDIVEAILNLGADAAAAGSLFVFK 232 (258)
T ss_pred HHHHHHHHcCCCEEEEEccCCCCCcCC-CCHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHHHCCCCEEEEcceeeeC
Confidence 557888999999999964321122234 4889999998876 79999999999999999999 7999999999999984
No 119
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=98.48 E-value=1.5e-06 Score=81.95 Aligned_cols=77 Identities=29% Similarity=0.332 Sum_probs=61.4
Q ss_pred HHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHHHh
Q 015722 270 AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFS 349 (402)
Q Consensus 270 ~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~~ 349 (402)
.+-++.+.+.|++.+++.+-..-+... ...++.+.++++.+ ++||++.|||++.+|+.+++.+||++|++||.++.+
T Consensus 148 ~~~~~~~~~~g~~~ii~~~~~~~g~~~-g~~~~~i~~i~~~~--~ipvia~GGi~~~~di~~~~~~Gadgv~ig~a~~~~ 224 (230)
T TIGR00007 148 EELAKRLEELGLEGIIYTDISRDGTLS-GPNFELTKELVKAV--NVPVIASGGVSSIDDLIALKKLGVYGVIVGKALYEG 224 (230)
T ss_pred HHHHHHHHhCCCCEEEEEeecCCCCcC-CCCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHCCCCEEEEeHHHHcC
Confidence 355788999999999875321111112 35688899988876 799999999999999999999999999999999864
No 120
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=98.47 E-value=1.1e-06 Score=81.70 Aligned_cols=97 Identities=23% Similarity=0.246 Sum_probs=73.6
Q ss_pred CCccHHHHHHHHHccCccEEEEec-----cCHHH----HHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCC
Q 015722 244 RSLNWKDVKWLQTITSLPILVKGV-----LTAED----ASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGR 314 (402)
Q Consensus 244 ~~~~~~~i~~lr~~~~~Pv~vK~~-----~~~~d----a~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~ 314 (402)
.+...++|+.+++.++.++.+|.+ ++.++ .+.+.++|+|+|..|... ..+.++.+.+.-.++.++++
T Consensus 108 ~~~V~~eI~~v~~a~~~~~~lKVIlEt~~Lt~ee~~~A~~i~~~aGAdFVKTSTGf----~~~gAT~edv~lM~~~vg~~ 183 (228)
T COG0274 108 WEAVEREIRAVVEACADAVVLKVILETGLLTDEEKRKACEIAIEAGADFVKTSTGF----SAGGATVEDVKLMKETVGGR 183 (228)
T ss_pred HHHHHHHHHHHHHHhCCCceEEEEEeccccCHHHHHHHHHHHHHhCCCEEEcCCCC----CCCCCCHHHHHHHHHHhccC
Confidence 334557899999988766778976 34333 456789999999998521 14456777777777777888
Q ss_pred CeEEEecCCCCHHHHHHHHHcCcCEEEEch
Q 015722 315 VPVFLDGGVRRGTDVFKALALGASGVFVGR 344 (402)
Q Consensus 315 i~via~GGI~~g~dv~kal~lGAd~V~iGr 344 (402)
+.|-++|||||.+|+.+++.+||.-++.-+
T Consensus 184 vgvKaSGGIrt~eda~~~i~aga~RiGtSs 213 (228)
T COG0274 184 VGVKASGGIRTAEDAKAMIEAGATRIGTSS 213 (228)
T ss_pred ceeeccCCcCCHHHHHHHHHHhHHHhcccc
Confidence 999999999999999999999976655444
No 121
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=98.47 E-value=2.1e-05 Score=75.25 Aligned_cols=100 Identities=17% Similarity=0.080 Sum_probs=64.8
Q ss_pred HHHHHHHHccCccEEEEec--cCHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCH
Q 015722 249 KDVKWLQTITSLPILVKGV--LTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRG 326 (402)
Q Consensus 249 ~~i~~lr~~~~~Pv~vK~~--~~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g 326 (402)
+.++.+++. ++..++-.. .+.+..+...+..-..+.++-.||+.........+.+.++++... +.||+++|||++.
T Consensus 120 ~~~~~~~~~-Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~msv~~~~g~~~~~~~~~~i~~lr~~~~-~~~i~v~gGI~~~ 197 (244)
T PRK13125 120 KYVEIIKNK-GLKPVFFTSPKFPDLLIHRLSKLSPLFIYYGLRPATGVPLPVSVERNIKRVRNLVG-NKYLVVGFGLDSP 197 (244)
T ss_pred HHHHHHHHc-CCCEEEEECCCCCHHHHHHHHHhCCCEEEEEeCCCCCCCchHHHHHHHHHHHHhcC-CCCEEEeCCcCCH
Confidence 345555553 444443332 346777777777555554553344321222223456666666542 5789999999999
Q ss_pred HHHHHHHHcCcCEEEEchHHHHhh
Q 015722 327 TDVFKALALGASGVFVGRPVPFSL 350 (402)
Q Consensus 327 ~dv~kal~lGAd~V~iGr~~l~~~ 350 (402)
+++.+++.+|||++.+|+.++.-+
T Consensus 198 e~i~~~~~~gaD~vvvGSai~~~~ 221 (244)
T PRK13125 198 EDARDALSAGADGVVVGTAFIEEL 221 (244)
T ss_pred HHHHHHHHcCCCEEEECHHHHHHH
Confidence 999999999999999999987543
No 122
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=98.45 E-value=1.7e-06 Score=81.77 Aligned_cols=77 Identities=23% Similarity=0.299 Sum_probs=63.8
Q ss_pred ccCHHHHHHHHHhCCcEEEE--ecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEch
Q 015722 267 VLTAEDASLAIQYGAAGIIV--SNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGR 344 (402)
Q Consensus 267 ~~~~~da~~a~~aGad~I~v--sn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr 344 (402)
..++..++++.++|++.|.. +--|. ..|+...+.|..+++.. ++|||++|||.+++|+.+++.+|||+|++|+
T Consensus 131 ~dd~~~ar~l~~~G~~~vmPlg~pIGs---g~Gi~~~~~I~~I~e~~--~vpVI~egGI~tpeda~~AmelGAdgVlV~S 205 (248)
T cd04728 131 TDDPVLAKRLEDAGCAAVMPLGSPIGS---GQGLLNPYNLRIIIERA--DVPVIVDAGIGTPSDAAQAMELGADAVLLNT 205 (248)
T ss_pred CCCHHHHHHHHHcCCCEeCCCCcCCCC---CCCCCCHHHHHHHHHhC--CCcEEEeCCCCCHHHHHHHHHcCCCEEEECh
Confidence 46889999999999999965 21121 13566788888888764 7999999999999999999999999999999
Q ss_pred HHHH
Q 015722 345 PVPF 348 (402)
Q Consensus 345 ~~l~ 348 (402)
++..
T Consensus 206 AIt~ 209 (248)
T cd04728 206 AIAK 209 (248)
T ss_pred HhcC
Confidence 8764
No 123
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=98.41 E-value=1.9e-05 Score=75.50 Aligned_cols=152 Identities=16% Similarity=0.175 Sum_probs=94.4
Q ss_pred CChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCC--CccccccccccccccCCCCCchhhHHHhhhhcCC
Q 015722 167 KHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLP--PHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDR 244 (402)
Q Consensus 167 ~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 244 (402)
.+.+.+.+.+++.+++|++.|.+.+ |.. -| .+....+ .....+.+....
T Consensus 11 P~~~~~~~~~~~l~~~Gad~iel~i--Pfs------------dPv~DG~~I~~---------------a~~~al~~g~~~ 61 (242)
T cd04724 11 PDLETTLEILKALVEAGADIIELGI--PFS------------DPVADGPVIQA---------------ASERALANGVTL 61 (242)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECC--CCC------------CCCCCCHHHHH---------------HHHHHHHcCCCH
Confidence 3567888999999999999998754 531 01 0000110 001112111122
Q ss_pred CccHHHHHHHHHccCccEEE--Eecc--C---HHHHHHHHHhCCcEEEEec---------------Ccc---------cC
Q 015722 245 SLNWKDVKWLQTITSLPILV--KGVL--T---AEDASLAIQYGAAGIIVSN---------------HGA---------RQ 293 (402)
Q Consensus 245 ~~~~~~i~~lr~~~~~Pv~v--K~~~--~---~~da~~a~~aGad~I~vsn---------------~gg---------~~ 293 (402)
....+.++++|+..+.|+++ +... + .+-++.+.++|+|+|++-. +|- +.
T Consensus 62 ~~~~~~~~~vr~~~~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T~ 141 (242)
T cd04724 62 KDVLELVKEIRKKNTIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTTP 141 (242)
T ss_pred HHHHHHHHHHhhcCCCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 34567888888877788654 3211 1 2347778888999888811 110 00
Q ss_pred -----------C--------C---CC-----cchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHH
Q 015722 294 -----------L--------D---YV-----PATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPV 346 (402)
Q Consensus 294 -----------~--------d---~~-----~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~ 346 (402)
. . ++ +...+.+.++++.. ++||+++|||++.+++.++... ||+|.+|+.+
T Consensus 142 ~~~i~~i~~~~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~~--~~pI~vggGI~~~e~~~~~~~~-ADgvVvGSai 218 (242)
T cd04724 142 DERIKKIAELASGFIYYVSRTGVTGARTELPDDLKELIKRIRKYT--DLPIAVGFGISTPEQAAEVAKY-ADGVIVGSAL 218 (242)
T ss_pred HHHHHHHHhhCCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhcC--CCcEEEEccCCCHHHHHHHHcc-CCEEEECHHH
Confidence 0 0 11 11235566666543 7999999999999999999999 9999999998
Q ss_pred HHhh
Q 015722 347 PFSL 350 (402)
Q Consensus 347 l~~~ 350 (402)
+.-+
T Consensus 219 v~~~ 222 (242)
T cd04724 219 VKII 222 (242)
T ss_pred HHHH
Confidence 7654
No 124
>PRK00208 thiG thiazole synthase; Reviewed
Probab=98.41 E-value=2.6e-06 Score=80.57 Aligned_cols=77 Identities=22% Similarity=0.322 Sum_probs=63.3
Q ss_pred ccCHHHHHHHHHhCCcEEEE--ecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEch
Q 015722 267 VLTAEDASLAIQYGAAGIIV--SNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGR 344 (402)
Q Consensus 267 ~~~~~da~~a~~aGad~I~v--sn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr 344 (402)
..++..++++.++|++.|.. +--|. ..|+...+.+..+++.. ++|||++|||.+++|+.+++.+|||+|++|+
T Consensus 131 ~~d~~~ak~l~~~G~~~vmPlg~pIGs---g~gi~~~~~i~~i~e~~--~vpVIveaGI~tpeda~~AmelGAdgVlV~S 205 (250)
T PRK00208 131 TDDPVLAKRLEEAGCAAVMPLGAPIGS---GLGLLNPYNLRIIIEQA--DVPVIVDAGIGTPSDAAQAMELGADAVLLNT 205 (250)
T ss_pred CCCHHHHHHHHHcCCCEeCCCCcCCCC---CCCCCCHHHHHHHHHhc--CCeEEEeCCCCCHHHHHHHHHcCCCEEEECh
Confidence 46899999999999999965 21121 13566677888888764 7999999999999999999999999999999
Q ss_pred HHHH
Q 015722 345 PVPF 348 (402)
Q Consensus 345 ~~l~ 348 (402)
.+..
T Consensus 206 AItk 209 (250)
T PRK00208 206 AIAV 209 (250)
T ss_pred HhhC
Confidence 8764
No 125
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.39 E-value=5.5e-06 Score=76.12 Aligned_cols=170 Identities=14% Similarity=0.208 Sum_probs=103.8
Q ss_pred EEEEeecCChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCc-cccccccccccccCCCCCchhhHHHh
Q 015722 160 FFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPH-LTLKNYEGLYIGKMDKTDDSGLASYV 238 (402)
Q Consensus 160 ~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (402)
.+-+.-..+.+...+.++.+-+.|++.+.++...+..-......+..+ |.- .....+... ..+......++. ++
T Consensus 14 ~~~v~r~~~~~~~~~~~~~~~~~Gv~~vqlr~k~~~~~e~~~~~~~~~--~~~~~g~gtvl~~--d~~~~A~~~gAd-gv 88 (187)
T PRK07455 14 AIAVIRAPDLELGLQMAEAVAAGGMRLIEITWNSDQPAELISQLREKL--PECIIGTGTILTL--EDLEEAIAAGAQ-FC 88 (187)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHhC--CCcEEeEEEEEcH--HHHHHHHHcCCC-EE
Confidence 444555667777788888888888888888887765322223332221 110 000000000 000000000000 11
Q ss_pred hhhcCCCccHHHHHHHHHccCccEEEEeccCHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEE
Q 015722 239 ANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVF 318 (402)
Q Consensus 239 ~~~~d~~~~~~~i~~lr~~~~~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~vi 318 (402)
..|.++.++++ .++..+.+.++. +.|++++..+.+.|+|+|.++-. ..+...+.+..++..+ +++|++
T Consensus 89 ---~~p~~~~~~~~-~~~~~~~~~i~G-~~t~~e~~~A~~~Gadyv~~Fpt------~~~~G~~~l~~~~~~~-~~ipvv 156 (187)
T PRK07455 89 ---FTPHVDPELIE-AAVAQDIPIIPG-ALTPTEIVTAWQAGASCVKVFPV------QAVGGADYIKSLQGPL-GHIPLI 156 (187)
T ss_pred ---ECCCCCHHHHH-HHHHcCCCEEcC-cCCHHHHHHHHHCCCCEEEECcC------CcccCHHHHHHHHhhC-CCCcEE
Confidence 12344544444 455556676654 89999999999999999999321 1122356777777666 369999
Q ss_pred EecCCCCHHHHHHHHHcCcCEEEEchHHH
Q 015722 319 LDGGVRRGTDVFKALALGASGVFVGRPVP 347 (402)
Q Consensus 319 a~GGI~~g~dv~kal~lGAd~V~iGr~~l 347 (402)
+.||| +.+++...+++||++|.+++.++
T Consensus 157 aiGGI-~~~n~~~~l~aGa~~vav~s~i~ 184 (187)
T PRK07455 157 PTGGV-TLENAQAFIQAGAIAVGLSGQLF 184 (187)
T ss_pred EeCCC-CHHHHHHHHHCCCeEEEEehhcc
Confidence 99999 48999999999999999999764
No 126
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=98.39 E-value=6.1e-06 Score=79.17 Aligned_cols=168 Identities=23% Similarity=0.258 Sum_probs=98.1
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhh---cCCCCccccccccccccccCCCCCchhhHHHhhhhcCCCccHH
Q 015722 173 AQLVKRAERAGFKAIALTVDTPRLGRREADIKNR---FVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWK 249 (402)
Q Consensus 173 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~---~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 249 (402)
.++.+..+++|+.+|-|..|...++....+++.- +.+|- -.+.+. ++..++..+...|+...+. .-.-+..+
T Consensus 71 ~~~a~~y~~~GA~aiSVlTe~~~F~Gs~~dL~~v~~~~~~Pv--L~KDFI-id~~QI~eA~~~GADaVLL--I~~~L~~~ 145 (254)
T PF00218_consen 71 AEIAKAYEEAGAAAISVLTEPKFFGGSLEDLRAVRKAVDLPV--LRKDFI-IDPYQIYEARAAGADAVLL--IAAILSDD 145 (254)
T ss_dssp HHHHHHHHHTT-SEEEEE--SCCCHHHHHHHHHHHHHSSS-E--EEES----SHHHHHHHHHTT-SEEEE--EGGGSGHH
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCCCHHHHHHHHHHhCCCc--ccccCC-CCHHHHHHHHHcCCCEeeh--hHHhCCHH
Confidence 4566777889999999999998888777776532 33331 111110 0001111111111111110 11122333
Q ss_pred HHHHHH---HccCccEEEEeccCHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCH
Q 015722 250 DVKWLQ---TITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRG 326 (402)
Q Consensus 250 ~i~~lr---~~~~~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g 326 (402)
.++.+. ...++-.+| .+.+.++++++.++|++.|-|.|.- +..-...++...++...++.++.+|+.+||.+.
T Consensus 146 ~l~~l~~~a~~lGle~lV-EVh~~~El~~al~~~a~iiGINnRd---L~tf~vd~~~~~~l~~~ip~~~~~iseSGI~~~ 221 (254)
T PF00218_consen 146 QLEELLELAHSLGLEALV-EVHNEEELERALEAGADIIGINNRD---LKTFEVDLNRTEELAPLIPKDVIVISESGIKTP 221 (254)
T ss_dssp HHHHHHHHHHHTT-EEEE-EESSHHHHHHHHHTT-SEEEEESBC---TTTCCBHTHHHHHHHCHSHTTSEEEEESS-SSH
T ss_pred HHHHHHHHHHHcCCCeEE-EECCHHHHHHHHHcCCCEEEEeCcc---ccCcccChHHHHHHHhhCccceeEEeecCCCCH
Confidence 333333 334554443 5688999999999999999888753 333333445555666666667899999999999
Q ss_pred HHHHHHHHcCcCEEEEchHHHHh
Q 015722 327 TDVFKALALGASGVFVGRPVPFS 349 (402)
Q Consensus 327 ~dv~kal~lGAd~V~iGr~~l~~ 349 (402)
+|+.+...+|+|+|.||+.++.+
T Consensus 222 ~d~~~l~~~G~davLVGe~lm~~ 244 (254)
T PF00218_consen 222 EDARRLARAGADAVLVGEALMRS 244 (254)
T ss_dssp HHHHHHCTTT-SEEEESHHHHTS
T ss_pred HHHHHHHHCCCCEEEECHHHhCC
Confidence 99999999999999999999974
No 127
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=98.38 E-value=3.8e-06 Score=79.44 Aligned_cols=76 Identities=28% Similarity=0.261 Sum_probs=60.5
Q ss_pred HHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHH-HHHcCcCEEEEchHHHH
Q 015722 270 AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFK-ALALGASGVFVGRPVPF 348 (402)
Q Consensus 270 ~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~k-al~lGAd~V~iGr~~l~ 348 (402)
.+.++.+.++|+|.|++++....+...| ..++.+.++++.+ ++||+++|||++.+|+.+ ...+||++|++|++|.|
T Consensus 156 ~~~~~~~~~~G~d~i~i~~i~~~g~~~g-~~~~~~~~i~~~~--~ipvia~GGi~s~~di~~~l~~~gadgV~vg~a~h~ 232 (232)
T TIGR03572 156 VEWAREAEQLGAGEILLNSIDRDGTMKG-YDLELIKTVSDAV--SIPVIALGGAGSLDDLVEVALEAGASAVAAASLFHF 232 (232)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCcCC-CCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHHcCCCEEEEehhhhC
Confidence 4667889999999999976322111122 4688899998877 799999999999999999 55599999999998853
No 128
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=98.36 E-value=1.7e-06 Score=81.72 Aligned_cols=77 Identities=27% Similarity=0.288 Sum_probs=61.8
Q ss_pred HHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcC-cCEEEEchHHHH
Q 015722 270 AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALG-ASGVFVGRPVPF 348 (402)
Q Consensus 270 ~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lG-Ad~V~iGr~~l~ 348 (402)
.+.++.+.+.|++.|.+.+...-+...| +.++.+.++++.+ ++|||++|||++.+|+.+++..| |++|++||+++.
T Consensus 149 ~e~~~~~~~~g~~~ii~~~~~~~g~~~G-~d~~~i~~l~~~~--~ipvia~GGi~~~~di~~~~~~g~~~gv~vg~a~~~ 225 (233)
T PRK00748 149 EDLAKRFEDAGVKAIIYTDISRDGTLSG-PNVEATRELAAAV--PIPVIASGGVSSLDDIKALKGLGAVEGVIVGRALYE 225 (233)
T ss_pred HHHHHHHHhcCCCEEEEeeecCcCCcCC-CCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCccEEEEEHHHHc
Confidence 4557788889999888853211111234 6789999998876 69999999999999999999998 999999999987
Q ss_pred h
Q 015722 349 S 349 (402)
Q Consensus 349 ~ 349 (402)
+
T Consensus 226 ~ 226 (233)
T PRK00748 226 G 226 (233)
T ss_pred C
Confidence 5
No 129
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=98.36 E-value=5.3e-06 Score=76.76 Aligned_cols=165 Identities=19% Similarity=0.166 Sum_probs=109.5
Q ss_pred cCChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCC
Q 015722 166 TKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRS 245 (402)
Q Consensus 166 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 245 (402)
..+.+....+++..-+.|+++|.||+.+|....-.+.++..+. ..-+...++.+- .+.......|.+.. ..|.
T Consensus 21 ~~~~e~a~~~a~Ali~gGi~~IEITl~sp~a~e~I~~l~~~~p-~~lIGAGTVL~~--~q~~~a~~aGa~fi----VsP~ 93 (211)
T COG0800 21 GDDVEEALPLAKALIEGGIPAIEITLRTPAALEAIRALAKEFP-EALIGAGTVLNP--EQARQAIAAGAQFI----VSPG 93 (211)
T ss_pred eCCHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhCc-ccEEccccccCH--HHHHHHHHcCCCEE----ECCC
Confidence 5678888889999999999999999999998777777766653 111222222110 00000111122222 2566
Q ss_pred ccHHHHHHHHHccCccEEEEeccCHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCC
Q 015722 246 LNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRR 325 (402)
Q Consensus 246 ~~~~~i~~lr~~~~~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~ 325 (402)
++-+.++.. ...++|++ -|+.|+.++..|.++|++.+.++-... -+|+. .++.+.--. .+++++.+|||.
T Consensus 94 ~~~ev~~~a-~~~~ip~~-PG~~TptEi~~Ale~G~~~lK~FPa~~---~Gg~~---~~ka~~gP~-~~v~~~pTGGVs- 163 (211)
T COG0800 94 LNPEVAKAA-NRYGIPYI-PGVATPTEIMAALELGASALKFFPAEV---VGGPA---MLKALAGPF-PQVRFCPTGGVS- 163 (211)
T ss_pred CCHHHHHHH-HhCCCccc-CCCCCHHHHHHHHHcChhheeecCccc---cCcHH---HHHHHcCCC-CCCeEeecCCCC-
Confidence 675555554 44588885 899999999999999999999964211 12233 222222111 379999999998
Q ss_pred HHHHHHHHHcCcCEEEEchHHH
Q 015722 326 GTDVFKALALGASGVFVGRPVP 347 (402)
Q Consensus 326 g~dv~kal~lGAd~V~iGr~~l 347 (402)
...+.+++++|+.+|++|+-+.
T Consensus 164 ~~N~~~yla~gv~avG~Gs~l~ 185 (211)
T COG0800 164 LDNAADYLAAGVVAVGLGSWLV 185 (211)
T ss_pred HHHHHHHHhCCceEEecCcccc
Confidence 6799999999999999888654
No 130
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.36 E-value=3.6e-06 Score=80.00 Aligned_cols=100 Identities=22% Similarity=0.317 Sum_probs=78.6
Q ss_pred cHHHHHHHHHccCccEEEEe-ccCHHHHHHHHHhCCcEEEEec---------------Cccc---CC-------------
Q 015722 247 NWKDVKWLQTITSLPILVKG-VLTAEDASLAIQYGAAGIIVSN---------------HGAR---QL------------- 294 (402)
Q Consensus 247 ~~~~i~~lr~~~~~Pv~vK~-~~~~~da~~a~~aGad~I~vsn---------------~gg~---~~------------- 294 (402)
..+.|+++.+.+.+|+.+.+ +.+.++++.+.++||+.+++.. +|.+ .+
T Consensus 64 n~~~I~~i~~~~~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt~a~~~~~~l~~~~~~fg~~ivvslD~~~g~v~~~gw~ 143 (234)
T PRK13587 64 EFDYIKSLRRLTTKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKGIQDTDWLKEMAHTFPGRIYLSVDAYGEDIKVNGWE 143 (234)
T ss_pred hHHHHHHHHhhcCCeEEEcCCcCCHHHHHHHHHCCCCEEEECchHhcCHHHHHHHHHHcCCCEEEEEEeeCCEEEecCCc
Confidence 45778999888899999975 6899999999999999998852 1111 00
Q ss_pred -----------------------------CC--CcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEc
Q 015722 295 -----------------------------DY--VPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVG 343 (402)
Q Consensus 295 -----------------------------d~--~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iG 343 (402)
++ ..+.++.+.++.+.. ++||++.|||++.+|+.+++.+|+++|.+|
T Consensus 144 ~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~~~~li~~l~~~~--~ipvi~~GGi~s~edi~~l~~~G~~~vivG 221 (234)
T PRK13587 144 EDTELNLFSFVRQLSDIPLGGIIYTDIAKDGKMSGPNFELTGQLVKAT--TIPVIASGGIRHQQDIQRLASLNVHAAIIG 221 (234)
T ss_pred ccCCCCHHHHHHHHHHcCCCEEEEecccCcCCCCccCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCCEEEEh
Confidence 01 123456677776654 799999999999999999999999999999
Q ss_pred hHHHH
Q 015722 344 RPVPF 348 (402)
Q Consensus 344 r~~l~ 348 (402)
++++.
T Consensus 222 ~a~~~ 226 (234)
T PRK13587 222 KAAHQ 226 (234)
T ss_pred HHHHh
Confidence 99874
No 131
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.34 E-value=4.5e-06 Score=80.11 Aligned_cols=77 Identities=21% Similarity=0.225 Sum_probs=61.6
Q ss_pred HHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHH-cCcCEEEEchHHHH
Q 015722 270 AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALA-LGASGVFVGRPVPF 348 (402)
Q Consensus 270 ~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~-lGAd~V~iGr~~l~ 348 (402)
.+.++.+.+.|++.|++.++.......| ..++.+.++.+.+ ++|||++|||++.+|+.+++. .||++|++|+.+.+
T Consensus 156 ~~~~~~~~~~g~~~ii~~~i~~~g~~~g-~d~~~i~~~~~~~--~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~ 232 (253)
T PRK02083 156 VEWAKEVEELGAGEILLTSMDRDGTKNG-YDLELTRAVSDAV--NVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHF 232 (253)
T ss_pred HHHHHHHHHcCCCEEEEcCCcCCCCCCC-cCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHc
Confidence 3557888999999999966432111122 3688889988876 799999999999999999997 49999999999987
Q ss_pred h
Q 015722 349 S 349 (402)
Q Consensus 349 ~ 349 (402)
+
T Consensus 233 ~ 233 (253)
T PRK02083 233 G 233 (253)
T ss_pred C
Confidence 4
No 132
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.32 E-value=3.7e-06 Score=79.93 Aligned_cols=77 Identities=27% Similarity=0.364 Sum_probs=62.4
Q ss_pred HHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHHHh
Q 015722 270 AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFS 349 (402)
Q Consensus 270 ~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~~ 349 (402)
.+.++.+.+.|++.|.+.+...... .....++.+.++++.+ ++||++.|||++.+|+.+++.+||++|++|+.++.+
T Consensus 152 ~~~~~~~~~~G~~~i~~~~~~~~g~-~~g~~~~~i~~i~~~~--~iPvia~GGI~~~~di~~~~~~Ga~gv~vgsa~~~~ 228 (241)
T PRK13585 152 VEAAKRFEELGAGSILFTNVDVEGL-LEGVNTEPVKELVDSV--DIPVIASGGVTTLDDLRALKEAGAAGVVVGSALYKG 228 (241)
T ss_pred HHHHHHHHHcCCCEEEEEeecCCCC-cCCCCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCCEEEEEHHHhcC
Confidence 4668889999999999865311111 1335788899998877 799999999999999999989999999999998753
No 133
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=98.32 E-value=3.8e-06 Score=78.23 Aligned_cols=117 Identities=24% Similarity=0.347 Sum_probs=88.4
Q ss_pred cHHHHHHHHHccCccEEEEe-ccCHHHHHHHHHhCCcEEEEec-------------------------------------
Q 015722 247 NWKDVKWLQTITSLPILVKG-VLTAEDASLAIQYGAAGIIVSN------------------------------------- 288 (402)
Q Consensus 247 ~~~~i~~lr~~~~~Pv~vK~-~~~~~da~~a~~aGad~I~vsn------------------------------------- 288 (402)
..+.++++.+.+.+|+.|.| +.+.+|+++++.+|||-|.+..
T Consensus 62 ~~~vv~r~A~~vfiPltVGGGI~s~eD~~~ll~aGADKVSINsaAv~~p~lI~~~a~~FGsQciVvaIDakr~~~g~~~~ 141 (256)
T COG0107 62 MLDVVERVAEQVFIPLTVGGGIRSVEDARKLLRAGADKVSINSAAVKDPELITEAADRFGSQCIVVAIDAKRVPDGENGW 141 (256)
T ss_pred HHHHHHHHHhhceeeeEecCCcCCHHHHHHHHHcCCCeeeeChhHhcChHHHHHHHHHhCCceEEEEEEeeeccCCCCCc
Confidence 45778899899999999975 6899999999999999988821
Q ss_pred -----CcccC---C------------------------CCCc--chHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHH
Q 015722 289 -----HGARQ---L------------------------DYVP--ATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALA 334 (402)
Q Consensus 289 -----~gg~~---~------------------------d~~~--~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~ 334 (402)
|||+. + |+.. -.++.+..+++.+ ++||||+||..+.+|+.+++.
T Consensus 142 ~~v~~~gGr~~t~~d~~~Wa~~~e~~GAGEIlLtsmD~DGtk~GyDl~l~~~v~~~v--~iPvIASGGaG~~ehf~eaf~ 219 (256)
T COG0107 142 YEVFTHGGREDTGLDAVEWAKEVEELGAGEILLTSMDRDGTKAGYDLELTRAVREAV--NIPVIASGGAGKPEHFVEAFT 219 (256)
T ss_pred EEEEecCCCcCCCcCHHHHHHHHHHcCCceEEEeeecccccccCcCHHHHHHHHHhC--CCCEEecCCCCcHHHHHHHHH
Confidence 23321 1 1111 1456778888877 899999999999999999999
Q ss_pred cC-cCEEEEchHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHhCC
Q 015722 335 LG-ASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGC 378 (402)
Q Consensus 335 lG-Ad~V~iGr~~l~~~~~~G~~gv~~~i~~l~~el~~~m~~~G~ 378 (402)
.| ||++..++-|.|+ +- -..|++..|...|.
T Consensus 220 ~~~adAaLAAsiFH~~-----~~--------~i~evK~yL~~~gi 251 (256)
T COG0107 220 EGKADAALAASIFHFG-----EI--------TIGEVKEYLAEQGI 251 (256)
T ss_pred hcCccHHHhhhhhhcC-----cc--------cHHHHHHHHHHcCC
Confidence 87 9999999988874 21 23455666666554
No 134
>PLN02411 12-oxophytodienoate reductase
Probab=98.31 E-value=1e-05 Score=82.56 Aligned_cols=148 Identities=17% Similarity=0.096 Sum_probs=91.1
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhh-hcCCCccHHHH
Q 015722 173 AQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVAN-QIDRSLNWKDV 251 (402)
Q Consensus 173 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~~~~~~i 251 (402)
.+..+||+++||+++.|+..+-+ +.+.|--|. .+.+ ++ +|-++ +.-..+..++|
T Consensus 168 ~~AA~rA~~AGFDGVEIH~AhGY-------Ll~QFLSp~-tN~R------------tD-----eYGGSlENR~RF~lEIi 222 (391)
T PLN02411 168 RQAALNAIRAGFDGIEIHGAHGY-------LIDQFLKDG-INDR------------TD-----EYGGSIENRCRFLMQVV 222 (391)
T ss_pred HHHHHHHHHcCCCEEEEccccch-------HHHHhCCCc-cCCC------------CC-----cCCCCHHHHhHHHHHHH
Confidence 45567888999999999876533 334453231 1111 11 01111 01123567999
Q ss_pred HHHHHccC-ccEEEEeccC-----------HH----HHHHHHHh------CCcEEEEecCccc---CCC---CCcc-h-H
Q 015722 252 KWLQTITS-LPILVKGVLT-----------AE----DASLAIQY------GAAGIIVSNHGAR---QLD---YVPA-T-V 301 (402)
Q Consensus 252 ~~lr~~~~-~Pv~vK~~~~-----------~~----da~~a~~a------Gad~I~vsn~gg~---~~d---~~~~-~-~ 301 (402)
+.+|+.++ -.|.+|.... .+ .++.+.+. |+|.|.||..... +.. .++. . .
T Consensus 223 ~aVr~~vg~d~vgvRiS~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~ 302 (391)
T PLN02411 223 QAVVSAIGADRVGVRVSPAIDHLDATDSDPLNLGLAVVERLNKLQLQNGSKLAYLHVTQPRYTAYGQTESGRHGSEEEEA 302 (391)
T ss_pred HHHHHHcCCCeEEEEEcccccccCCCCCcchhhHHHHHHHHHHHHhhcCCCeEEEEecCCcccccCCCcccccCCccchh
Confidence 99999984 3588887631 11 23344332 5999999852110 000 1111 1 1
Q ss_pred HHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcC-cCEEEEchHHHH
Q 015722 302 MALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALG-ASGVFVGRPVPF 348 (402)
Q Consensus 302 ~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lG-Ad~V~iGr~~l~ 348 (402)
....+|++.+ ++|||+.||| +.+++.++|+.| ||.|.+||+++.
T Consensus 303 ~~a~~ik~~v--~~pvi~~G~i-~~~~a~~~l~~g~aDlV~~gR~~ia 347 (391)
T PLN02411 303 QLMRTLRRAY--QGTFMCSGGF-TRELGMQAVQQGDADLVSYGRLFIS 347 (391)
T ss_pred HHHHHHHHHc--CCCEEEECCC-CHHHHHHHHHcCCCCEEEECHHHHh
Confidence 3446677776 6899999999 579999999999 999999999986
No 135
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.31 E-value=1.8e-05 Score=74.06 Aligned_cols=170 Identities=16% Similarity=0.160 Sum_probs=109.7
Q ss_pred EEEEeecCChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCC-ccccccccccccccCCCCCchhhHHHh
Q 015722 160 FFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPP-HLTLKNYEGLYIGKMDKTDDSGLASYV 238 (402)
Q Consensus 160 ~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (402)
.+-+.-..+.+...++++.+.+.|++.+.||+++|..-.-.+.++..| |. .+....+.. ..+.+.....|+. ++
T Consensus 17 ~iaV~r~~~~~~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~--p~~~IGAGTVl~--~~~a~~a~~aGA~-Fi 91 (212)
T PRK05718 17 VVPVIVINKLEDAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEV--PEALIGAGTVLN--PEQLAQAIEAGAQ-FI 91 (212)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHC--CCCEEEEeeccC--HHHHHHHHHcCCC-EE
Confidence 445555778888889999999999999999999986444445666555 32 122222111 0000001111111 22
Q ss_pred hhhcCCCccHHHHHHHHHccCccEEEEeccCHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEE
Q 015722 239 ANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVF 318 (402)
Q Consensus 239 ~~~~d~~~~~~~i~~lr~~~~~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~vi 318 (402)
..|.++-+.++..++ .++|++ -|++|+.++..+.++|++.|.++-.+ .. +| ...++.++..++ +++++
T Consensus 92 ---vsP~~~~~vi~~a~~-~~i~~i-PG~~TptEi~~a~~~Ga~~vKlFPa~--~~-gg---~~~lk~l~~p~p-~~~~~ 159 (212)
T PRK05718 92 ---VSPGLTPPLLKAAQE-GPIPLI-PGVSTPSELMLGMELGLRTFKFFPAE--AS-GG---VKMLKALAGPFP-DVRFC 159 (212)
T ss_pred ---ECCCCCHHHHHHHHH-cCCCEe-CCCCCHHHHHHHHHCCCCEEEEccch--hc-cC---HHHHHHHhccCC-CCeEE
Confidence 246666666777665 577774 78999999999999999999995311 11 12 345555555553 69999
Q ss_pred EecCCCCHHHHHHHHHcCcCEEEEchHHHH
Q 015722 319 LDGGVRRGTDVFKALALGASGVFVGRPVPF 348 (402)
Q Consensus 319 a~GGI~~g~dv~kal~lGAd~V~iGr~~l~ 348 (402)
++|||. .+++.+++.+|+.+++.|+ +++
T Consensus 160 ptGGV~-~~ni~~~l~ag~v~~vggs-~L~ 187 (212)
T PRK05718 160 PTGGIS-PANYRDYLALPNVLCIGGS-WMV 187 (212)
T ss_pred EeCCCC-HHHHHHHHhCCCEEEEECh-HhC
Confidence 999998 6999999999955555544 444
No 136
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=98.31 E-value=9e-06 Score=76.05 Aligned_cols=93 Identities=24% Similarity=0.278 Sum_probs=67.3
Q ss_pred cHHHHHHHHHccCccEEEEec-----cCHHH----HHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeE
Q 015722 247 NWKDVKWLQTITSLPILVKGV-----LTAED----ASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPV 317 (402)
Q Consensus 247 ~~~~i~~lr~~~~~Pv~vK~~-----~~~~d----a~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~v 317 (402)
..++++++++..+ .+.+|.+ ++.++ .+.+.++|+|+|..|.. - ..+..+.+.+..+++.++++++|
T Consensus 104 v~~ei~~i~~~~~-g~~lKvIlE~~~L~~~ei~~a~~ia~eaGADfvKTsTG-f---~~~gat~~dv~~m~~~v~~~v~I 178 (211)
T TIGR00126 104 VYDDIRAVVEACA-GVLLKVIIETGLLTDEEIRKACEICIDAGADFVKTSTG-F---GAGGATVEDVRLMRNTVGDTIGV 178 (211)
T ss_pred HHHHHHHHHHHcC-CCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEeCCC-C---CCCCCCHHHHHHHHHHhccCCeE
Confidence 4567888888764 3334544 34333 46788999999999742 1 12345666666666677678999
Q ss_pred EEecCCCCHHHHHHHHHcCcCEEEEch
Q 015722 318 FLDGGVRRGTDVFKALALGASGVFVGR 344 (402)
Q Consensus 318 ia~GGI~~g~dv~kal~lGAd~V~iGr 344 (402)
-++|||++.+|+++.+.+||+-++..+
T Consensus 179 KaaGGirt~~~a~~~i~aGa~riGts~ 205 (211)
T TIGR00126 179 KASGGVRTAEDAIAMIEAGASRIGASA 205 (211)
T ss_pred EEeCCCCCHHHHHHHHHHhhHHhCcch
Confidence 999999999999999999998876543
No 137
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=98.28 E-value=3.4e-05 Score=71.40 Aligned_cols=47 Identities=19% Similarity=0.225 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhc---CCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHHH
Q 015722 301 VMALEEVVQAAK---GRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 348 (402)
Q Consensus 301 ~~~l~~i~~~~~---~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~ 348 (402)
++.+.++++.+. ..+||+++|||+ .+++.+++..|||.+.+||+++.
T Consensus 149 ~~~i~~i~~~~~~~~~~~~i~v~GGI~-~env~~l~~~gad~iivgsai~~ 198 (210)
T TIGR01163 149 LEKIREVRKMIDENGLSILIEVDGGVN-DDNARELAEAGADILVAGSAIFG 198 (210)
T ss_pred HHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHHHHHcCCCEEEEChHHhC
Confidence 345555555442 237999999996 79999999999999999999863
No 138
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=98.28 E-value=4.4e-06 Score=79.12 Aligned_cols=101 Identities=28% Similarity=0.418 Sum_probs=77.0
Q ss_pred cHHHHHHHHHccCccEEEEe-ccCHHHHHHHHHhCCcEEEEec---------------Cc------------c-------
Q 015722 247 NWKDVKWLQTITSLPILVKG-VLTAEDASLAIQYGAAGIIVSN---------------HG------------A------- 291 (402)
Q Consensus 247 ~~~~i~~lr~~~~~Pv~vK~-~~~~~da~~a~~aGad~I~vsn---------------~g------------g------- 291 (402)
..+.|+.+.+.+.+|+.+.+ +.+.++++.+.++|++.++++. +| |
T Consensus 61 n~~~i~~i~~~~~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~~~~~~~~l~~~~~~~g~~~ivvslD~~~g~~v~~~g 140 (229)
T PF00977_consen 61 NLELIKEIAKETGIPIQVGGGIRSIEDAERLLDAGADRVVIGTEALEDPELLEELAERYGSQRIVVSLDARDGYKVATNG 140 (229)
T ss_dssp HHHHHHHHHHHSSSEEEEESSE-SHHHHHHHHHTT-SEEEESHHHHHCCHHHHHHHHHHGGGGEEEEEEEEETEEEEETT
T ss_pred HHHHHHHHHhcCCccEEEeCccCcHHHHHHHHHhCCCEEEeChHHhhchhHHHHHHHHcCcccEEEEEEeeeceEEEecC
Confidence 45778999999999999975 5899999999999999999852 01 1
Q ss_pred -cC---------------------------CCC--CcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEE
Q 015722 292 -RQ---------------------------LDY--VPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVF 341 (402)
Q Consensus 292 -~~---------------------------~d~--~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~ 341 (402)
.. .++ .-+.++.+.++++.+ ++|||++|||++.+|+.++...|+++|.
T Consensus 141 w~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~d~~~~~~l~~~~--~~~viasGGv~~~~Dl~~l~~~G~~gvi 218 (229)
T PF00977_consen 141 WQESSGIDLEEFAKRLEELGAGEIILTDIDRDGTMQGPDLELLKQLAEAV--NIPVIASGGVRSLEDLRELKKAGIDGVI 218 (229)
T ss_dssp TTEEEEEEHHHHHHHHHHTT-SEEEEEETTTTTTSSS--HHHHHHHHHHH--SSEEEEESS--SHHHHHHHHHTTECEEE
T ss_pred ccccCCcCHHHHHHHHHhcCCcEEEEeeccccCCcCCCCHHHHHHHHHHc--CCCEEEecCCCCHHHHHHHHHCCCcEEE
Confidence 00 012 124567788888877 8999999999999999999999999999
Q ss_pred EchHHHHh
Q 015722 342 VGRPVPFS 349 (402)
Q Consensus 342 iGr~~l~~ 349 (402)
+|++|+.+
T Consensus 219 vg~al~~g 226 (229)
T PF00977_consen 219 VGSALHEG 226 (229)
T ss_dssp ESHHHHTT
T ss_pred EehHhhCC
Confidence 99999754
No 139
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=98.27 E-value=3.6e-05 Score=73.42 Aligned_cols=167 Identities=22% Similarity=0.246 Sum_probs=100.5
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhc---CCCCccccccccccccccCCCCCchhhHHHhhhhcCCCccHH
Q 015722 173 AQLVKRAERAGFKAIALTVDTPRLGRREADIKNRF---VLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWK 249 (402)
Q Consensus 173 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~---~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 249 (402)
.++++..++.|+.+|-|..|...++....+++.-- .+| +-.+.+. ++..++..+...|+...+. .-..++-+
T Consensus 64 ~~~A~~y~~~GA~aISVlTe~~~F~Gs~~~l~~v~~~v~~P--vL~KDFI-id~~QI~ea~~~GADavLL--I~~~L~~~ 138 (247)
T PRK13957 64 VQIAKTYETLGASAISVLTDQSYFGGSLEDLKSVSSELKIP--VLRKDFI-LDEIQIREARAFGASAILL--IVRILTPS 138 (247)
T ss_pred HHHHHHHHHCCCcEEEEEcCCCcCCCCHHHHHHHHHhcCCC--EEecccc-CCHHHHHHHHHcCCCEEEe--EHhhCCHH
Confidence 35677788899999999888887777776665332 222 1111110 0000110000011111000 01112222
Q ss_pred HHHHHH---HccCccEEEEeccCHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCH
Q 015722 250 DVKWLQ---TITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRG 326 (402)
Q Consensus 250 ~i~~lr---~~~~~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g 326 (402)
.++.+. ...++-.+| .+.+.++++++.++|++.|-|.|..- ..-...++...++...++.+..+|+.|||.|+
T Consensus 139 ~l~~l~~~a~~lGle~LV-EVh~~~El~~a~~~ga~iiGINnRdL---~t~~vd~~~~~~L~~~ip~~~~~IsESGI~t~ 214 (247)
T PRK13957 139 QIKSFLKHASSLGMDVLV-EVHTEDEAKLALDCGAEIIGINTRDL---DTFQIHQNLVEEVAAFLPPNIVKVGESGIESR 214 (247)
T ss_pred HHHHHHHHHHHcCCceEE-EECCHHHHHHHHhCCCCEEEEeCCCC---ccceECHHHHHHHHhhCCCCcEEEEcCCCCCH
Confidence 333333 334554443 56888999999999999888887532 22223344555666667667889999999999
Q ss_pred HHHHHHHHcCcCEEEEchHHHHh
Q 015722 327 TDVFKALALGASGVFVGRPVPFS 349 (402)
Q Consensus 327 ~dv~kal~lGAd~V~iGr~~l~~ 349 (402)
+|+.+.... ||+|.||+.++.+
T Consensus 215 ~d~~~l~~~-~davLvG~~lm~~ 236 (247)
T PRK13957 215 SDLDKFRKL-VDAALIGTYFMEK 236 (247)
T ss_pred HHHHHHHHh-CCEEEECHHHhCC
Confidence 999997776 9999999999864
No 140
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=98.26 E-value=5.8e-06 Score=83.41 Aligned_cols=96 Identities=21% Similarity=0.296 Sum_probs=72.2
Q ss_pred CCCccHHHHHHHHHccCccEEEEeccC----HHHHHHHHHhCCcEEEEecCcccCCC-CCcchHHHHHHHHHHhcCCCeE
Q 015722 243 DRSLNWKDVKWLQTITSLPILVKGVLT----AEDASLAIQYGAAGIIVSNHGARQLD-YVPATVMALEEVVQAAKGRVPV 317 (402)
Q Consensus 243 d~~~~~~~i~~lr~~~~~Pv~vK~~~~----~~da~~a~~aGad~I~vsn~gg~~~d-~~~~~~~~l~~i~~~~~~~i~v 317 (402)
+|++..+.++++++.. +.+|...+ .+.++.++++|+|.|++++.--.|.+ .+...+..|.++.+.+ ++||
T Consensus 117 ~p~l~~~ii~~vr~a~---VtvkiRl~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~--~IPV 191 (369)
T TIGR01304 117 KPELLGERIAEVRDSG---VITAVRVSPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGEL--DVPV 191 (369)
T ss_pred ChHHHHHHHHHHHhcc---eEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHC--CCCE
Confidence 4555667788888863 77887643 35678899999999999532111222 2334466777777766 7999
Q ss_pred EEecCCCCHHHHHHHHHcCcCEEEEch
Q 015722 318 FLDGGVRRGTDVFKALALGASGVFVGR 344 (402)
Q Consensus 318 ia~GGI~~g~dv~kal~lGAd~V~iGr 344 (402)
|+ |+|.+.+|+.+++.+|||+|++|+
T Consensus 192 I~-G~V~t~e~A~~~~~aGaDgV~~G~ 217 (369)
T TIGR01304 192 IA-GGVNDYTTALHLMRTGAAGVIVGP 217 (369)
T ss_pred EE-eCCCCHHHHHHHHHcCCCEEEECC
Confidence 98 999999999999999999999886
No 141
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=98.25 E-value=8e-05 Score=67.66 Aligned_cols=173 Identities=20% Similarity=0.110 Sum_probs=112.8
Q ss_pred ChhhHHHHHHHHHcCCeEEecCCccCCHHHHhhcCC---CceEEEEeecCC----hhHHHHHHHHHHHcCCcEEEEecCC
Q 015722 121 PEGECATARAASAAGTIMTLSSWATSSVEEVSSTGP---GIRFFQLYVTKH----RNVDAQLVKRAERAGFKAIALTVDT 193 (402)
Q Consensus 121 ~~ge~ala~aa~~~G~~~~vs~~~~~s~eei~~~~~---~~~~~QLy~~~d----~~~~~~~l~ra~~~G~~ai~itvd~ 193 (402)
.+.-..+++.+.+.|+...+... .-++.+.+..+ -+..+++.. .. .+...+.+++++++|++++.++.
T Consensus 12 ~~~~~~~~~~~~~~gv~gi~~~g--~~i~~~~~~~~~~~~~v~~~v~~-~~~~~~~~~~~~~a~~a~~~Gad~i~v~~-- 86 (201)
T cd00945 12 LEDIAKLCDEAIEYGFAAVCVNP--GYVRLAADALAGSDVPVIVVVGF-PTGLTTTEVKVAEVEEAIDLGADEIDVVI-- 86 (201)
T ss_pred HHHHHHHHHHHHHhCCcEEEECH--HHHHHHHHHhCCCCCeEEEEecC-CCCCCcHHHHHHHHHHHHHcCCCEEEEec--
Confidence 33445788888888987655332 22343433332 234556543 22 46677888999999999998743
Q ss_pred CCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCCccHHHHHHHHHc--cCccEEEEecc---
Q 015722 194 PRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTI--TSLPILVKGVL--- 268 (402)
Q Consensus 194 p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~--~~~Pv~vK~~~--- 268 (402)
|.. +. |. .+.....+.++.+++. .++|++++...
T Consensus 87 ~~~----------~~-~~------------------------------~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~ 125 (201)
T cd00945 87 NIG----------SL-KE------------------------------GDWEEVLEEIAAVVEAADGGLPLKVILETRGL 125 (201)
T ss_pred cHH----------HH-hC------------------------------CCHHHHHHHHHHHHHHhcCCceEEEEEECCCC
Confidence 210 00 00 0011234566777776 48999998762
Q ss_pred -CHHHH----HHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEc
Q 015722 269 -TAEDA----SLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVG 343 (402)
Q Consensus 269 -~~~da----~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iG 343 (402)
+++.. +.+.+.|+|+|..+.. .. .+...+..+.++++.++.+++|++.||+.+.+++..++.+||+++.+|
T Consensus 126 ~~~~~~~~~~~~~~~~g~~~iK~~~~-~~---~~~~~~~~~~~i~~~~~~~~~v~~~gg~~~~~~~~~~~~~Ga~g~~~g 201 (201)
T cd00945 126 KTADEIAKAARIAAEAGADFIKTSTG-FG---GGGATVEDVKLMKEAVGGRVGVKAAGGIKTLEDALAAIEAGADGIGTS 201 (201)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEeCCC-CC---CCCCCHHHHHHHHHhcccCCcEEEECCCCCHHHHHHHHHhccceeecC
Confidence 45443 3456899999998642 11 123456777777777654689999999999999999999999999875
No 142
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=98.23 E-value=2e-05 Score=73.29 Aligned_cols=89 Identities=29% Similarity=0.352 Sum_probs=63.7
Q ss_pred cHHHHHHHHHccC-ccEEEEec-----cCHHH----HHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCe
Q 015722 247 NWKDVKWLQTITS-LPILVKGV-----LTAED----ASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVP 316 (402)
Q Consensus 247 ~~~~i~~lr~~~~-~Pv~vK~~-----~~~~d----a~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~ 316 (402)
..+++.++++..+ .|+ |.+ ++.+. ++.+.++|+|.|.++. |.. ...++++.+..+++.++.++|
T Consensus 103 ~~~ei~~v~~~~~g~~l--kvI~e~~~l~~~~i~~a~ria~e~GaD~IKTsT-G~~---~~~at~~~v~~~~~~~~~~v~ 176 (203)
T cd00959 103 VYEEIAAVVEACGGAPL--KVILETGLLTDEEIIKACEIAIEAGADFIKTST-GFG---PGGATVEDVKLMKEAVGGRVG 176 (203)
T ss_pred HHHHHHHHHHhcCCCeE--EEEEecCCCCHHHHHHHHHHHHHhCCCEEEcCC-CCC---CCCCCHHHHHHHHHHhCCCce
Confidence 4567888888764 444 433 34443 5778999999999973 321 233555555555555556899
Q ss_pred EEEecCCCCHHHHHHHHHcCcCEEE
Q 015722 317 VFLDGGVRRGTDVFKALALGASGVF 341 (402)
Q Consensus 317 via~GGI~~g~dv~kal~lGAd~V~ 341 (402)
|.++|||+|.+++++.+.+||+-++
T Consensus 177 ik~aGGikt~~~~l~~~~~g~~riG 201 (203)
T cd00959 177 VKAAGGIRTLEDALAMIEAGATRIG 201 (203)
T ss_pred EEEeCCCCCHHHHHHHHHhChhhcc
Confidence 9999999999999999999998765
No 143
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=98.22 E-value=1.6e-05 Score=75.54 Aligned_cols=101 Identities=31% Similarity=0.386 Sum_probs=76.8
Q ss_pred cHHHHHHHHHccCccEEEEe-ccCHHHHHHHHHhCCcEEEEec--------------Ccc-c---CCC--C---------
Q 015722 247 NWKDVKWLQTITSLPILVKG-VLTAEDASLAIQYGAAGIIVSN--------------HGA-R---QLD--Y--------- 296 (402)
Q Consensus 247 ~~~~i~~lr~~~~~Pv~vK~-~~~~~da~~a~~aGad~I~vsn--------------~gg-~---~~d--~--------- 296 (402)
..+.++.+.+.+.+|+.+.+ +.+.++++.+.++||+.+++.. .|. + .+| .
T Consensus 66 n~~~i~~i~~~~~~~v~vgGGir~~edv~~~l~~Ga~~viigt~~~~~~~~~~~~~~~~~~~iivslD~~~~~~~~~~~~ 145 (233)
T cd04723 66 NDEAIRELAAAWPLGLWVDGGIRSLENAQEWLKRGASRVIVGTETLPSDDDEDRLAALGEQRLVLSLDFRGGQLLKPTDF 145 (233)
T ss_pred cHHHHHHHHHhCCCCEEEecCcCCHHHHHHHHHcCCCeEEEcceeccchHHHHHHHhcCCCCeEEEEeccCCeeccccCc
Confidence 45778888888889999875 5788999999999999998753 122 1 011 0
Q ss_pred ----------------------------CcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHHH
Q 015722 297 ----------------------------VPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 348 (402)
Q Consensus 297 ----------------------------~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~ 348 (402)
..+..+.+.++.+.+ .+||++.|||++.+|+.+++.+||++|.+|++++.
T Consensus 146 ~~~~~~~~~~~~~~~~li~~di~~~G~~~g~~~~~~~~i~~~~--~ipvi~~GGi~s~edi~~l~~~G~~~vivGsal~~ 223 (233)
T cd04723 146 IGPEELLRRLAKWPEELIVLDIDRVGSGQGPDLELLERLAARA--DIPVIAAGGVRSVEDLELLKKLGASGALVASALHD 223 (233)
T ss_pred CCHHHHHHHHHHhCCeEEEEEcCccccCCCcCHHHHHHHHHhc--CCCEEEeCCCCCHHHHHHHHHcCCCEEEEehHHHc
Confidence 112234455555544 79999999999999999999999999999999886
Q ss_pred h
Q 015722 349 S 349 (402)
Q Consensus 349 ~ 349 (402)
+
T Consensus 224 g 224 (233)
T cd04723 224 G 224 (233)
T ss_pred C
Confidence 4
No 144
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=98.21 E-value=7.7e-06 Score=78.60 Aligned_cols=77 Identities=18% Similarity=0.281 Sum_probs=62.0
Q ss_pred HHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcC-cCEEEEchHHHH
Q 015722 270 AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALG-ASGVFVGRPVPF 348 (402)
Q Consensus 270 ~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lG-Ad~V~iGr~~l~ 348 (402)
.+.++.+.++|+|.|.+++... ......+.++.+.++++.+ ++|||++|||++.+|+.+++..| |++|++|+.+..
T Consensus 158 ~~~~~~l~~~G~~~iivt~i~~-~g~~~g~~~~~~~~i~~~~--~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~ 234 (254)
T TIGR00735 158 VEWAKEVEKLGAGEILLTSMDK-DGTKSGYDLELTKAVSEAV--KIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHY 234 (254)
T ss_pred HHHHHHHHHcCCCEEEEeCcCc-ccCCCCCCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhC
Confidence 3557888999999999964211 1112345688889988876 79999999999999999999988 999999999876
Q ss_pred h
Q 015722 349 S 349 (402)
Q Consensus 349 ~ 349 (402)
+
T Consensus 235 ~ 235 (254)
T TIGR00735 235 R 235 (254)
T ss_pred C
Confidence 3
No 145
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=98.20 E-value=5.7e-05 Score=72.06 Aligned_cols=168 Identities=18% Similarity=0.250 Sum_probs=103.9
Q ss_pred HHHHHHHHcCCcEEEEecCCCCCCchhHHHhh---hcCCCCccccccccccccccCCCCCchhhHH--HhhhhcCCCccH
Q 015722 174 QLVKRAERAGFKAIALTVDTPRLGRREADIKN---RFVLPPHLTLKNYEGLYIGKMDKTDDSGLAS--YVANQIDRSLNW 248 (402)
Q Consensus 174 ~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~---~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~~~ 248 (402)
+.++..++.|+.+|-|..|.+.+....++++. ...+| +-.+.+. ++..++..+...|+.. .+....+.. ..
T Consensus 70 ~ia~~Ye~~GAa~iSVLTd~~~F~Gs~e~L~~v~~~v~~P--vL~KDFi-iD~yQI~~Ar~~GADavLLI~~~L~~~-~l 145 (254)
T COG0134 70 EIAKAYEEGGAAAISVLTDPKYFQGSFEDLRAVRAAVDLP--VLRKDFI-IDPYQIYEARAAGADAVLLIVAALDDE-QL 145 (254)
T ss_pred HHHHHHHHhCCeEEEEecCccccCCCHHHHHHHHHhcCCC--eeeccCC-CCHHHHHHHHHcCcccHHHHHHhcCHH-HH
Confidence 35667778999999999999887666666643 33334 1112110 0111111111111111 111111111 12
Q ss_pred HHHHHHHHccCccEEEEeccCHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHH
Q 015722 249 KDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTD 328 (402)
Q Consensus 249 ~~i~~lr~~~~~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~d 328 (402)
+.+.......+.-++| .+.+.+++++|.++|++-|-|.|..-+.+ ...++...++....+.+.-+|..+||.+++|
T Consensus 146 ~el~~~A~~LGm~~LV-EVh~~eEl~rAl~~ga~iIGINnRdL~tf---~vdl~~t~~la~~~p~~~~~IsESGI~~~~d 221 (254)
T COG0134 146 EELVDRAHELGMEVLV-EVHNEEELERALKLGAKIIGINNRDLTTL---EVDLETTEKLAPLIPKDVILISESGISTPED 221 (254)
T ss_pred HHHHHHHHHcCCeeEE-EECCHHHHHHHHhCCCCEEEEeCCCcchh---eecHHHHHHHHhhCCCCcEEEecCCCCCHHH
Confidence 2233333334554443 56889999999999999999988643322 2334445566666666788999999999999
Q ss_pred HHHHHHcCcCEEEEchHHHHh
Q 015722 329 VFKALALGASGVFVGRPVPFS 349 (402)
Q Consensus 329 v~kal~lGAd~V~iGr~~l~~ 349 (402)
+.+....||+++.||+.+|..
T Consensus 222 v~~l~~~ga~a~LVG~slM~~ 242 (254)
T COG0134 222 VRRLAKAGADAFLVGEALMRA 242 (254)
T ss_pred HHHHHHcCCCEEEecHHHhcC
Confidence 999999999999999999874
No 146
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=98.18 E-value=0.00023 Score=68.36 Aligned_cols=157 Identities=18% Similarity=0.223 Sum_probs=98.6
Q ss_pred cCChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCC
Q 015722 166 TKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRS 245 (402)
Q Consensus 166 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 245 (402)
..+.+.+.+.++.+.++|+++|.+.+ |.. -.+-.+.+.. .+....+.......
T Consensus 27 dP~~e~s~e~i~~L~~~GaD~iELGv--PfS----------DPvADGP~Iq---------------~A~~rAL~~g~t~~ 79 (265)
T COG0159 27 DPDLETSLEIIKTLVEAGADILELGV--PFS----------DPVADGPTIQ---------------AAHLRALAAGVTLE 79 (265)
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEecC--CCC----------CcCccCHHHH---------------HHHHHHHHCCCCHH
Confidence 34668889999999999999998744 421 0011111111 01111222222333
Q ss_pred ccHHHHHHHHHc-cCccEEEEeccC------HHH-HHHHHHhCCcEEEEec---------------Ccc--------cC-
Q 015722 246 LNWKDVKWLQTI-TSLPILVKGVLT------AED-ASLAIQYGAAGIIVSN---------------HGA--------RQ- 293 (402)
Q Consensus 246 ~~~~~i~~lr~~-~~~Pv~vK~~~~------~~d-a~~a~~aGad~I~vsn---------------~gg--------~~- 293 (402)
..++.++.+|+. .++|+++=.-.+ .+. .+.+.++|+|++++-. ||= +.
T Consensus 80 ~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~ 159 (265)
T COG0159 80 DTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTP 159 (265)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 467889999965 678988754322 232 6788999999998831 110 00
Q ss_pred ----------------------CCCCc-c----hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHH
Q 015722 294 ----------------------LDYVP-A----TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPV 346 (402)
Q Consensus 294 ----------------------~d~~~-~----~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~ 346 (402)
..+.. . .-+.+.++++.. ++||.+-=||++++++.+.... ||+|.+|+++
T Consensus 160 ~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~--~~Pv~vGFGIs~~e~~~~v~~~-ADGVIVGSAi 236 (265)
T COG0159 160 DERLKKIAEAASGFIYYVSRMGVTGARNPVSADVKELVKRVRKYT--DVPVLVGFGISSPEQAAQVAEA-ADGVIVGSAI 236 (265)
T ss_pred HHHHHHHHHhCCCcEEEEecccccCCCcccchhHHHHHHHHHHhc--CCCeEEecCcCCHHHHHHHHHh-CCeEEEcHHH
Confidence 00111 1 234455555554 8999997799999999999999 9999999999
Q ss_pred HHhhhc
Q 015722 347 PFSLAV 352 (402)
Q Consensus 347 l~~~~~ 352 (402)
+..+..
T Consensus 237 V~~i~~ 242 (265)
T COG0159 237 VKIIEE 242 (265)
T ss_pred HHHHHh
Confidence 876543
No 147
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=98.18 E-value=2.9e-05 Score=71.92 Aligned_cols=80 Identities=26% Similarity=0.303 Sum_probs=60.9
Q ss_pred ccCHHHHHHHHHhCCcEEEEecCcccCCC---CCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEc
Q 015722 267 VLTAEDASLAIQYGAAGIIVSNHGARQLD---YVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVG 343 (402)
Q Consensus 267 ~~~~~da~~a~~aGad~I~vsn~gg~~~d---~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iG 343 (402)
+.+.+++..+.+.|+|.|.++.-..+... ..+..++.+.++++.. .++||++.||| +.+++.+++.+||++|.+|
T Consensus 111 ~~t~~e~~~a~~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~v~a~GGI-~~~~i~~~~~~Ga~gv~~g 188 (212)
T PRK00043 111 THTLEEAAAALAAGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAV-GDIPIVAIGGI-TPENAPEVLEAGADGVAVV 188 (212)
T ss_pred CCCHHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc-CCCCEEEECCc-CHHHHHHHHHcCCCEEEEe
Confidence 35788999999999999998632111111 1122378888888766 24999999999 6899999999999999999
Q ss_pred hHHHH
Q 015722 344 RPVPF 348 (402)
Q Consensus 344 r~~l~ 348 (402)
+.+..
T Consensus 189 s~i~~ 193 (212)
T PRK00043 189 SAITG 193 (212)
T ss_pred HHhhc
Confidence 98653
No 148
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=98.16 E-value=1.8e-05 Score=75.43 Aligned_cols=76 Identities=21% Similarity=0.221 Sum_probs=62.8
Q ss_pred HHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHHH
Q 015722 270 AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 348 (402)
Q Consensus 270 ~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~ 348 (402)
.+-++.+.++|+|.|.+.+-.+ .....++.++.+.++++.+ ++||+++|||++.+|+.+++..||+.|++|+.++.
T Consensus 30 ~~~a~~~~~~G~~~i~i~d~~~-~~~~~~~~~~~i~~i~~~~--~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~~~~ 105 (243)
T cd04731 30 VELAKRYNEQGADELVFLDITA-SSEGRETMLDVVERVAEEV--FIPLTVGGGIRSLEDARRLLRAGADKVSINSAAVE 105 (243)
T ss_pred HHHHHHHHHCCCCEEEEEcCCc-ccccCcccHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCceEEECchhhh
Confidence 3567888999999999875432 1123456788899998877 79999999999999999999999999999998774
No 149
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=98.15 E-value=6.6e-05 Score=81.42 Aligned_cols=168 Identities=22% Similarity=0.226 Sum_probs=104.0
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhh---cCCCCccccccccccccccCCCCCchhhHHHhhhhcCCCccHH
Q 015722 173 AQLVKRAERAGFKAIALTVDTPRLGRREADIKNR---FVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWK 249 (402)
Q Consensus 173 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~---~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 249 (402)
.++++..++.|+.+|-|..|...++....+++.- ..+| +-.+.+. ++..++..+...|+...+. .-.-++-+
T Consensus 73 ~~~a~~y~~~GA~aiSVlTe~~~F~Gs~~~l~~vr~~v~~P--vLrKDFI-id~~QI~ea~~~GADavLL--I~~~L~~~ 147 (695)
T PRK13802 73 AALAREYEQGGASAISVLTEGRRFLGSLDDFDKVRAAVHIP--VLRKDFI-VTDYQIWEARAHGADLVLL--IVAALDDA 147 (695)
T ss_pred HHHHHHHHHcCCcEEEEecCcCcCCCCHHHHHHHHHhCCCC--EEecccc-CCHHHHHHHHHcCCCEeeh--hHhhcCHH
Confidence 4566677889999999999988877766666433 2233 1112110 0111111111111111110 01112222
Q ss_pred HHHHHHH---ccCccEEEEeccCHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCH
Q 015722 250 DVKWLQT---ITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRG 326 (402)
Q Consensus 250 ~i~~lr~---~~~~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g 326 (402)
.++.+.+ ..++-.+| .+.+.++++++.++|++.|-|.|.. +..-...++...++...++.++.+|+.+||+++
T Consensus 148 ~l~~l~~~a~~lGme~Lv-Evh~~~el~~a~~~ga~iiGINnRd---L~tf~vd~~~t~~L~~~ip~~~~~VsESGI~~~ 223 (695)
T PRK13802 148 QLKHLLDLAHELGMTVLV-ETHTREEIERAIAAGAKVIGINARN---LKDLKVDVNKYNELAADLPDDVIKVAESGVFGA 223 (695)
T ss_pred HHHHHHHHHHHcCCeEEE-EeCCHHHHHHHHhCCCCEEEEeCCC---CccceeCHHHHHHHHhhCCCCcEEEEcCCCCCH
Confidence 3333333 34555544 5688999999999999999888753 322233445555666666667889999999999
Q ss_pred HHHHHHHHcCcCEEEEchHHHHh
Q 015722 327 TDVFKALALGASGVFVGRPVPFS 349 (402)
Q Consensus 327 ~dv~kal~lGAd~V~iGr~~l~~ 349 (402)
+|+.++..+|||+|.||+.++.+
T Consensus 224 ~d~~~l~~~G~davLIGeslm~~ 246 (695)
T PRK13802 224 VEVEDYARAGADAVLVGEGVATA 246 (695)
T ss_pred HHHHHHHHCCCCEEEECHHhhCC
Confidence 99999999999999999988754
No 150
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=98.15 E-value=1e-05 Score=88.99 Aligned_cols=142 Identities=28% Similarity=0.262 Sum_probs=102.2
Q ss_pred ccHHHHHHHHH----cc-CccEEEEeccCHH---HHHHHHHhCCcEEEEecC-cccC------CCCCcchHHH-HHHHHH
Q 015722 246 LNWKDVKWLQT----IT-SLPILVKGVLTAE---DASLAIQYGAAGIIVSNH-GARQ------LDYVPATVMA-LEEVVQ 309 (402)
Q Consensus 246 ~~~~~i~~lr~----~~-~~Pv~vK~~~~~~---da~~a~~aGad~I~vsn~-gg~~------~d~~~~~~~~-l~~i~~ 309 (402)
++.++++++.= .- .-.|.||.+...- .|--..++.||.|.||+| ||+. ....--+|+. |.|-.+
T Consensus 1080 YSIEDLaQLIyDLk~aNP~ArVSVKLVSEaGVGiVASGVaK~~ADhI~vSGhDGGTGAS~wt~IK~AGlPWELGlAEThQ 1159 (2142)
T KOG0399|consen 1080 YSIEDLAQLIYDLKCANPRARVSVKLVSEAGVGIVASGVAKGNADHILVSGHDGGTGASRWTGIKHAGLPWELGLAETHQ 1159 (2142)
T ss_pred ccHHHHHHHHHHhhccCCCceeEEEEEecccceeeeeccccccCceEEEeccCCCcCcccccccccCCCChhhcchhhhh
Confidence 56677666542 22 3468889874322 133345678999999999 6553 1122223443 555544
Q ss_pred H-----hcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHHHhhhc--------------------------CC-hHH
Q 015722 310 A-----AKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAV--------------------------DG-EAG 357 (402)
Q Consensus 310 ~-----~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~~~~~--------------------------~G-~~g 357 (402)
. ++.++-+-.||+++||-|++-|-.+||+-.+.++.-+.++.| .| ++-
T Consensus 1160 tLv~NdLR~rvVlqtDGqlrtG~DV~iAallGAeefgf~T~plIalGCiMmRkCH~NtCpVGiAtQdp~LRakF~G~Peh 1239 (2142)
T KOG0399|consen 1160 TLVLNDLRGRVVLQTDGQLRTGRDVAIAALLGAEEFGFSTAPLIALGCIMMRKCHLNTCPVGIATQDPELRAKFPGQPEH 1239 (2142)
T ss_pred HHhhccccccEEEEecCccccchHHHHHHHhCchhhcccccHHHHHhhHHHHHhccCCCCcccccCCHHHHhhCCCCcHH
Confidence 3 345788999999999999999999999999999966666554 13 355
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCChhhhccc
Q 015722 358 VRKVLQMLRDEFELTMALSGCRSLKEITRN 387 (402)
Q Consensus 358 v~~~i~~l~~el~~~m~~~G~~~i~el~~~ 387 (402)
|.+++-.+.+|++.+|+.+|++++.|+.+.
T Consensus 1240 vVNff~yvaEEvR~imakLGfrtldemvGr 1269 (2142)
T KOG0399|consen 1240 VVNFFFYVAEEVRGIMAKLGFRTLDEMVGR 1269 (2142)
T ss_pred HHHHHHHHHHHHHHHHHHhCcchHHHHhcc
Confidence 888999999999999999999999999653
No 151
>PLN02334 ribulose-phosphate 3-epimerase
Probab=98.14 E-value=0.0002 Score=67.76 Aligned_cols=67 Identities=21% Similarity=0.238 Sum_probs=48.5
Q ss_pred chHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHHHhhhcCChHHHHHHHHHHHHHHHHHH
Q 015722 299 ATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTM 373 (402)
Q Consensus 299 ~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~~~~~~G~~gv~~~i~~l~~el~~~m 373 (402)
..++.+.++++.. .++||.++||| +.+++.+.+.+|||.+.+|++++.+ +.....++.++++++..|
T Consensus 160 ~~~~~i~~~~~~~-~~~~I~a~GGI-~~e~i~~l~~aGad~vvvgsai~~~------~d~~~~~~~l~~~~~~~~ 226 (229)
T PLN02334 160 SMMDKVRALRKKY-PELDIEVDGGV-GPSTIDKAAEAGANVIVAGSAVFGA------PDYAEVISGLRASVEKAA 226 (229)
T ss_pred HHHHHHHHHHHhC-CCCcEEEeCCC-CHHHHHHHHHcCCCEEEEChHHhCC------CCHHHHHHHHHHHHHHhh
Confidence 3455566666543 35799999999 5999999999999999999986532 234456666766666554
No 152
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=98.13 E-value=2.3e-05 Score=73.98 Aligned_cols=101 Identities=30% Similarity=0.435 Sum_probs=81.2
Q ss_pred cHHHHHHHHHccCccEEEEe-ccCHHHHHHHHHhCCcEEEEec---------------CcccC-----------------
Q 015722 247 NWKDVKWLQTITSLPILVKG-VLTAEDASLAIQYGAAGIIVSN---------------HGARQ----------------- 293 (402)
Q Consensus 247 ~~~~i~~lr~~~~~Pv~vK~-~~~~~da~~a~~aGad~I~vsn---------------~gg~~----------------- 293 (402)
..+.++++.+.++.||-+.| +.+.++++.+.++|++.+++.. +|++-
T Consensus 63 n~~~i~~i~~~~~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt~av~~p~~v~~~~~~~g~rivv~lD~r~g~vav~GW~ 142 (241)
T COG0106 63 NLEAIKEILEATDVPVQVGGGIRSLEDVEALLDAGVARVIIGTAAVKNPDLVKELCEEYGDRIVVALDARDGKVAVSGWQ 142 (241)
T ss_pred cHHHHHHHHHhCCCCEEeeCCcCCHHHHHHHHHCCCCEEEEecceecCHHHHHHHHHHcCCcEEEEEEccCCcccccccc
Confidence 44678888898999998875 5789999999999999998852 22210
Q ss_pred ----------------------------CCC--CcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHc-CcCEEEE
Q 015722 294 ----------------------------LDY--VPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALAL-GASGVFV 342 (402)
Q Consensus 294 ----------------------------~d~--~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~l-GAd~V~i 342 (402)
.|+ .-+.++.+.++.+.+ ++||+++|||++-+|+..+-.+ |..+|.+
T Consensus 143 e~s~~~~~~l~~~~~~~g~~~ii~TdI~~DGtl~G~n~~l~~~l~~~~--~ipviaSGGv~s~~Di~~l~~~~G~~GvIv 220 (241)
T COG0106 143 EDSGVELEELAKRLEEVGLAHILYTDISRDGTLSGPNVDLVKELAEAV--DIPVIASGGVSSLDDIKALKELSGVEGVIV 220 (241)
T ss_pred ccccCCHHHHHHHHHhcCCCeEEEEecccccccCCCCHHHHHHHHHHh--CcCEEEecCcCCHHHHHHHHhcCCCcEEEE
Confidence 012 234677888888888 8999999999999999999999 9999999
Q ss_pred chHHHHh
Q 015722 343 GRPVPFS 349 (402)
Q Consensus 343 Gr~~l~~ 349 (402)
||+++.+
T Consensus 221 G~ALy~g 227 (241)
T COG0106 221 GRALYEG 227 (241)
T ss_pred ehHHhcC
Confidence 9998864
No 153
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=98.10 E-value=8.7e-05 Score=76.97 Aligned_cols=192 Identities=15% Similarity=0.131 Sum_probs=112.9
Q ss_pred HHHHHHHHcCCcEEEEecCCCCCCchhHHHhhh---cCCCCccccccccccccccCCCCCchhhHHHhhhhcCCCccHHH
Q 015722 174 QLVKRAERAGFKAIALTVDTPRLGRREADIKNR---FVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKD 250 (402)
Q Consensus 174 ~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~---~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 250 (402)
++++.. +.|+.+|-|-.|...++....+++.- ..+| +-.+.+. ++..++..+...|+...+. .-.-++-+.
T Consensus 74 ~~a~~y-~~gA~aiSVlTe~~~F~Gs~~~l~~vr~~v~~P--vLrKDFi-id~~QI~ea~~~GADavLL--I~~~L~~~~ 147 (454)
T PRK09427 74 EIARVY-KHYASAISVLTDEKYFQGSFDFLPIVRAIVTQP--ILCKDFI-IDPYQIYLARYYGADAILL--MLSVLDDEQ 147 (454)
T ss_pred HHHHHH-HcCCeEEEEecCcCcCCCCHHHHHHHHHhCCCC--EEecccc-CCHHHHHHHHHcCCCchhH--HHHhCCHHH
Confidence 445555 67899999988888877666666432 2222 1111110 0111111111111111111 011122223
Q ss_pred HHHHHH---ccCccEEEEeccCHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHH
Q 015722 251 VKWLQT---ITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGT 327 (402)
Q Consensus 251 i~~lr~---~~~~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~ 327 (402)
++.+.+ ..++-.+| .+.+.++++++.++|++-|-+.|..-. .-...++.-.++...++.++.+|+.+||+|++
T Consensus 148 l~~l~~~a~~lGl~~lv-Evh~~~El~~al~~~a~iiGiNnRdL~---t~~vd~~~~~~l~~~ip~~~~~vseSGI~t~~ 223 (454)
T PRK09427 148 YRQLAAVAHSLNMGVLT-EVSNEEELERAIALGAKVIGINNRNLR---DLSIDLNRTRELAPLIPADVIVISESGIYTHA 223 (454)
T ss_pred HHHHHHHHHHcCCcEEE-EECCHHHHHHHHhCCCCEEEEeCCCCc---cceECHHHHHHHHhhCCCCcEEEEeCCCCCHH
Confidence 333333 34554443 678999999999999999988885322 22233444555556666678899999999999
Q ss_pred HHHHHHHcCcCEEEEchHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHhCCCChhhhc
Q 015722 328 DVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEIT 385 (402)
Q Consensus 328 dv~kal~lGAd~V~iGr~~l~~~~~~G~~gv~~~i~~l~~el~~~m~~~G~~~i~el~ 385 (402)
|+.++ ..|||+|.||+.+|.+ +.....++.+ +....+.||.++.+|+.
T Consensus 224 d~~~~-~~~~davLiG~~lm~~------~d~~~~~~~L---~~~~vKICGit~~eda~ 271 (454)
T PRK09427 224 QVREL-SPFANGFLIGSSLMAE------DDLELAVRKL---ILGENKVCGLTRPQDAK 271 (454)
T ss_pred HHHHH-HhcCCEEEECHHHcCC------CCHHHHHHHH---hccccccCCCCCHHHHH
Confidence 99886 4589999999999874 2222333333 23456789999988876
No 154
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.10 E-value=2.8e-05 Score=74.64 Aligned_cols=76 Identities=21% Similarity=0.225 Sum_probs=63.8
Q ss_pred HHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHHH
Q 015722 270 AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 348 (402)
Q Consensus 270 ~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~ 348 (402)
.+-++.+.++|++.|.+.+..+. .......++.++++++.+ ++||+++|||++.+|+.+++..||+.|++|+.++.
T Consensus 33 ~~~a~~~~~~G~~~i~i~dl~~~-~~~~~~~~~~i~~i~~~~--~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~~l~ 108 (253)
T PRK02083 33 VELAKRYNEEGADELVFLDITAS-SEGRDTMLDVVERVAEQV--FIPLTVGGGIRSVEDARRLLRAGADKVSINSAAVA 108 (253)
T ss_pred HHHHHHHHHcCCCEEEEEeCCcc-cccCcchHHHHHHHHHhC--CCCEEeeCCCCCHHHHHHHHHcCCCEEEEChhHhh
Confidence 46688888999999999764321 123467889999998887 79999999999999999999999999999998765
No 155
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.09 E-value=1.7e-05 Score=80.13 Aligned_cols=96 Identities=21% Similarity=0.281 Sum_probs=70.5
Q ss_pred CCCccHHHHHHHHHccCccEEEEec--cCHHHHHHHHHhCCcEEEEecCccc--CCCCCcc-hHHHHHHHHHHhcCCCeE
Q 015722 243 DRSLNWKDVKWLQTITSLPILVKGV--LTAEDASLAIQYGAAGIIVSNHGAR--QLDYVPA-TVMALEEVVQAAKGRVPV 317 (402)
Q Consensus 243 d~~~~~~~i~~lr~~~~~Pv~vK~~--~~~~da~~a~~aGad~I~vsn~gg~--~~d~~~~-~~~~l~~i~~~~~~~i~v 317 (402)
+|++..+.++.+++. .+++.++.. ...+-++.+.++|+|.|++ ||.+ |.+.+.. .+..+.++.+.. ++||
T Consensus 116 ~p~l~~~iv~~~~~~-~V~v~vr~~~~~~~e~a~~l~eaGvd~I~v--hgrt~~~~h~~~~~~~~~i~~~ik~~--~ipV 190 (368)
T PRK08649 116 KPELITERIAEIRDA-GVIVAVSLSPQRAQELAPTVVEAGVDLFVI--QGTVVSAEHVSKEGEPLNLKEFIYEL--DVPV 190 (368)
T ss_pred CHHHHHHHHHHHHhC-eEEEEEecCCcCHHHHHHHHHHCCCCEEEE--eccchhhhccCCcCCHHHHHHHHHHC--CCCE
Confidence 444556778888885 455545442 2346688999999999999 4432 3333333 456666666665 7999
Q ss_pred EEecCCCCHHHHHHHHHcCcCEEEEch
Q 015722 318 FLDGGVRRGTDVFKALALGASGVFVGR 344 (402)
Q Consensus 318 ia~GGI~~g~dv~kal~lGAd~V~iGr 344 (402)
|+ |+|.|.+++.+++.+|||+|++|+
T Consensus 191 Ia-G~V~t~e~A~~l~~aGAD~V~VG~ 216 (368)
T PRK08649 191 IV-GGCVTYTTALHLMRTGAAGVLVGI 216 (368)
T ss_pred EE-eCCCCHHHHHHHHHcCCCEEEECC
Confidence 99 999999999999999999999996
No 156
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.09 E-value=3.7e-05 Score=74.60 Aligned_cols=90 Identities=16% Similarity=0.127 Sum_probs=71.5
Q ss_pred HHHHHHHHHccC-ccEEEEeccCHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhc---CCCeEEEecCC
Q 015722 248 WKDVKWLQTITS-LPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAK---GRVPVFLDGGV 323 (402)
Q Consensus 248 ~~~i~~lr~~~~-~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~---~~i~via~GGI 323 (402)
.+.++.+|+..+ ...+.-.+.+.++++.+.++|+|.|.+.| .+.+.|.++++..+ +++.+.++|||
T Consensus 169 ~~~v~~~k~~~p~~~~I~VEv~tleea~~A~~~GaDiI~LDn----------~~~e~l~~~v~~~~~~~~~~~ieAsGgI 238 (273)
T PRK05848 169 KEFIQHARKNIPFTAKIEIECESLEEAKNAMNAGADIVMCDN----------MSVEEIKEVVAYRNANYPHVLLEASGNI 238 (273)
T ss_pred HHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHcCCCEEEECC----------CCHHHHHHHHHHhhccCCCeEEEEECCC
Confidence 356888888775 23334467899999999999999999876 24566666666543 36789999999
Q ss_pred CCHHHHHHHHHcCcCEEEEchHHHH
Q 015722 324 RRGTDVFKALALGASGVFVGRPVPF 348 (402)
Q Consensus 324 ~~g~dv~kal~lGAd~V~iGr~~l~ 348 (402)
+.+.+.++..+|+|.+.+|++...
T Consensus 239 -t~~ni~~ya~~GvD~IsvG~l~~s 262 (273)
T PRK05848 239 -TLENINAYAKSGVDAISSGSLIHQ 262 (273)
T ss_pred -CHHHHHHHHHcCCCEEEeChhhcC
Confidence 899999999999999999997653
No 157
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=98.08 E-value=2.6e-05 Score=73.12 Aligned_cols=78 Identities=22% Similarity=0.254 Sum_probs=57.7
Q ss_pred ccCHHHHHHHHHhCCcEEEEecCc-ccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchH
Q 015722 267 VLTAEDASLAIQYGAAGIIVSNHG-ARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRP 345 (402)
Q Consensus 267 ~~~~~da~~a~~aGad~I~vsn~g-g~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~ 345 (402)
..++-.+++++++||..|.--+.. | ...|..+...|..|++.. ++|||+|+||.+++|+.+++.+|||+|.+-++
T Consensus 131 ~~D~v~akrL~d~GcaavMPlgsPIG--Sg~Gi~n~~~l~~i~~~~--~vPvIvDAGiG~pSdaa~AMElG~daVLvNTA 206 (247)
T PF05690_consen 131 TDDPVLAKRLEDAGCAAVMPLGSPIG--SGRGIQNPYNLRIIIERA--DVPVIVDAGIGTPSDAAQAMELGADAVLVNTA 206 (247)
T ss_dssp -S-HHHHHHHHHTT-SEBEEBSSSTT--T---SSTHHHHHHHHHHG--SSSBEEES---SHHHHHHHHHTT-SEEEESHH
T ss_pred CCCHHHHHHHHHCCCCEEEecccccc--cCcCCCCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHcCCceeehhhH
Confidence 457788999999999999874321 1 113567778899998887 89999999999999999999999999999998
Q ss_pred HHH
Q 015722 346 VPF 348 (402)
Q Consensus 346 ~l~ 348 (402)
+..
T Consensus 207 iA~ 209 (247)
T PF05690_consen 207 IAK 209 (247)
T ss_dssp HHT
T ss_pred Hhc
Confidence 743
No 158
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=98.07 E-value=0.00012 Score=67.71 Aligned_cols=96 Identities=20% Similarity=0.199 Sum_probs=68.1
Q ss_pred HHHHHHHHccCccEEEEec--c-CHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCC
Q 015722 249 KDVKWLQTITSLPILVKGV--L-TAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRR 325 (402)
Q Consensus 249 ~~i~~lr~~~~~Pv~vK~~--~-~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~ 325 (402)
+.++++++ .++++++-.. . ..++++.+.+.|+|.|.+.. |......++..++.+.++++.+. .++|.++||| +
T Consensus 93 ~~i~~~~~-~g~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~p-g~~~~~~~~~~~~~i~~l~~~~~-~~~i~v~GGI-~ 168 (206)
T TIGR03128 93 GAVKAAKK-HGKEVQVDLINVKDKVKRAKELKELGADYIGVHT-GLDEQAKGQNPFEDLQTILKLVK-EARVAVAGGI-N 168 (206)
T ss_pred HHHHHHHH-cCCEEEEEecCCCChHHHHHHHHHcCCCEEEEcC-CcCcccCCCCCHHHHHHHHHhcC-CCcEEEECCc-C
Confidence 34556555 4788876532 2 24788889999999998842 21111233455667777776663 4677779999 6
Q ss_pred HHHHHHHHHcCcCEEEEchHHHH
Q 015722 326 GTDVFKALALGASGVFVGRPVPF 348 (402)
Q Consensus 326 g~dv~kal~lGAd~V~iGr~~l~ 348 (402)
.+.+.+++.+||+.|.+||.++.
T Consensus 169 ~~n~~~~~~~Ga~~v~vGsai~~ 191 (206)
T TIGR03128 169 LDTIPDVIKLGPDIVIVGGAITK 191 (206)
T ss_pred HHHHHHHHHcCCCEEEEeehhcC
Confidence 89999999999999999999653
No 159
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=98.05 E-value=2.5e-05 Score=75.12 Aligned_cols=77 Identities=21% Similarity=0.210 Sum_probs=63.7
Q ss_pred CH-HHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHH
Q 015722 269 TA-EDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVP 347 (402)
Q Consensus 269 ~~-~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l 347 (402)
++ +.|+...+.|+|.+.+.+.-+- .......++.+.++++.+ ++||+++|||++.+|+.+++.+||+.|.+|++++
T Consensus 31 dp~~~a~~~~~~G~~~l~v~Dl~~~-~~~~~~n~~~i~~i~~~~--~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~~~ 107 (254)
T TIGR00735 31 DPVELAQRYDEEGADELVFLDITAS-SEGRTTMIDVVERTAETV--FIPLTVGGGIKSIEDVDKLLRAGADKVSINTAAV 107 (254)
T ss_pred CHHHHHHHHHHcCCCEEEEEcCCcc-cccChhhHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHh
Confidence 44 5678888999999999764221 123456788899998887 7999999999999999999999999999999876
Q ss_pred H
Q 015722 348 F 348 (402)
Q Consensus 348 ~ 348 (402)
.
T Consensus 108 ~ 108 (254)
T TIGR00735 108 K 108 (254)
T ss_pred h
Confidence 4
No 160
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=98.04 E-value=0.00032 Score=72.52 Aligned_cols=95 Identities=22% Similarity=0.238 Sum_probs=67.8
Q ss_pred HHHHHHHHccCccEEEEec--cC-HHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCC
Q 015722 249 KDVKWLQTITSLPILVKGV--LT-AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRR 325 (402)
Q Consensus 249 ~~i~~lr~~~~~Pv~vK~~--~~-~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~ 325 (402)
+.++.+++ .+.++++..+ .+ .+.++.+.+.|+|+|.+. .|.+....++..++.|.++++.+ ++||++.||| +
T Consensus 98 ~~i~~a~~-~G~~~~~g~~s~~t~~e~~~~a~~~GaD~I~~~-pg~~~~~~~~~~~~~l~~l~~~~--~iPI~a~GGI-~ 172 (430)
T PRK07028 98 DAVRAARK-YGVRLMADLINVPDPVKRAVELEELGVDYINVH-VGIDQQMLGKDPLELLKEVSEEV--SIPIAVAGGL-D 172 (430)
T ss_pred HHHHHHHH-cCCEEEEEecCCCCHHHHHHHHHhcCCCEEEEE-eccchhhcCCChHHHHHHHHhhC--CCcEEEECCC-C
Confidence 34556655 4667666422 23 466788899999999774 23221112344567788887765 5999999999 5
Q ss_pred HHHHHHHHHcCcCEEEEchHHHH
Q 015722 326 GTDVFKALALGASGVFVGRPVPF 348 (402)
Q Consensus 326 g~dv~kal~lGAd~V~iGr~~l~ 348 (402)
.+.+.+++++||++|.+||.++.
T Consensus 173 ~~n~~~~l~aGAdgv~vGsaI~~ 195 (430)
T PRK07028 173 AETAAKAVAAGADIVIVGGNIIK 195 (430)
T ss_pred HHHHHHHHHcCCCEEEEChHHcC
Confidence 89999999999999999998764
No 161
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.03 E-value=3.6e-05 Score=73.51 Aligned_cols=100 Identities=23% Similarity=0.267 Sum_probs=75.3
Q ss_pred cHHHHHHHHHccCccEEEEe-ccCHHHHHHHHHhCCcEEEEec--------------Cccc-------------------
Q 015722 247 NWKDVKWLQTITSLPILVKG-VLTAEDASLAIQYGAAGIIVSN--------------HGAR------------------- 292 (402)
Q Consensus 247 ~~~~i~~lr~~~~~Pv~vK~-~~~~~da~~a~~aGad~I~vsn--------------~gg~------------------- 292 (402)
..+.++.+.+.+ .|+.+.+ +.+.++++.+.++|+|.+++.. +|.+
T Consensus 62 n~~~i~~i~~~~-~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT~a~~~p~~l~~~~~~~~~ivvslD~k~g~v~~~gw~~ 140 (241)
T PRK14114 62 NLPVLEKLSEFA-EHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLEDPSFLKFLKEIDVEPVFSLDTRGGKVAFKGWLA 140 (241)
T ss_pred hHHHHHHHHhhc-CcEEEecCCCCHHHHHHHHHCCCCEEEECchhhCCHHHHHHHHHhCCCEEEEEEccCCEEeeCCCee
Confidence 456778887776 6888864 5788999999999999988742 1110
Q ss_pred --CC------------------------CC--CcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHc-----C-cC
Q 015722 293 --QL------------------------DY--VPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALAL-----G-AS 338 (402)
Q Consensus 293 --~~------------------------d~--~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~l-----G-Ad 338 (402)
.. |+ .-+.++.+.++++.. ++|||++|||++.+|+.++..+ | ++
T Consensus 141 ~~~~~~~e~~~~~~~~g~~~ii~tdI~rdGt~~G~d~el~~~l~~~~--~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~ 218 (241)
T PRK14114 141 EEEIDPVSLLKRLKEYGLEEIVHTEIEKDGTLQEHDFSLTRKIAIEA--EVKVFAAGGISSENSLKTAQRVHRETNGLLK 218 (241)
T ss_pred cCCCCHHHHHHHHHhcCCCEEEEEeechhhcCCCcCHHHHHHHHHHC--CCCEEEECCCCCHHHHHHHHhcccccCCcEE
Confidence 00 11 124566777777665 7999999999999999999987 6 99
Q ss_pred EEEEchHHHHh
Q 015722 339 GVFVGRPVPFS 349 (402)
Q Consensus 339 ~V~iGr~~l~~ 349 (402)
+|.+|++++.+
T Consensus 219 gvivg~Al~~g 229 (241)
T PRK14114 219 GVIVGRAFLEG 229 (241)
T ss_pred EEEEehHHHCC
Confidence 99999998764
No 162
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.03 E-value=4.8e-05 Score=72.04 Aligned_cols=102 Identities=27% Similarity=0.300 Sum_probs=73.6
Q ss_pred cHHHHHHHHHccCccEEEE-eccCHHHHHHHHHhCCcEEEEecCc-------------cc---CCC--------------
Q 015722 247 NWKDVKWLQTITSLPILVK-GVLTAEDASLAIQYGAAGIIVSNHG-------------AR---QLD-------------- 295 (402)
Q Consensus 247 ~~~~i~~lr~~~~~Pv~vK-~~~~~~da~~a~~aGad~I~vsn~g-------------g~---~~d-------------- 295 (402)
..+.++++.+.+++|+.+- |+.+.+|++.+.+.|++.+++.... |. .+|
T Consensus 61 n~~~i~~i~~~~~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~~~~~l~~~~~~~g~ivvslD~~~g~v~~~gw~~~ 140 (228)
T PRK04128 61 NLDVVKNIIRETGLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAFDLEFLEKVTSEFEGITVSLDVKGGRIAVKGWLEE 140 (228)
T ss_pred hHHHHHHHHhhCCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhcCHHHHHHHHHHcCCEEEEEEccCCeEecCCCeEc
Confidence 4567888888888999986 4689999999999999999884210 10 001
Q ss_pred CCcchHHHHHHH------------------------HHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHHHh
Q 015722 296 YVPATVMALEEV------------------------VQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFS 349 (402)
Q Consensus 296 ~~~~~~~~l~~i------------------------~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~~ 349 (402)
......+.+.++ .+.. .++|||++|||++.+|+.++..+|+++|.+|++++.+
T Consensus 141 ~~~~~~~~~~~~~~~~~~ii~t~i~~dGt~~G~d~l~~~~-~~~pviasGGv~~~~Dl~~l~~~g~~gvivg~al~~g 217 (228)
T PRK04128 141 SSIKVEDAYEMLKNYVNRFIYTSIERDGTLTGIEEIERFW-GDEEFIYAGGVSSAEDVKKLAEIGFSGVIIGKALYEG 217 (228)
T ss_pred CCCCHHHHHHHHHHHhCEEEEEeccchhcccCHHHHHHhc-CCCCEEEECCCCCHHHHHHHHHCCCCEEEEEhhhhcC
Confidence 111122332222 2221 3699999999999999999999999999999998864
No 163
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=97.99 E-value=0.00018 Score=69.63 Aligned_cols=87 Identities=29% Similarity=0.379 Sum_probs=62.5
Q ss_pred HHHHHHccCccEEEE---------eccCHHH----HHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeE
Q 015722 251 VKWLQTITSLPILVK---------GVLTAED----ASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPV 317 (402)
Q Consensus 251 i~~lr~~~~~Pv~vK---------~~~~~~d----a~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~v 317 (402)
+.++...+++|+++- ...+.+. ++.+.++|+|.|..+-+| ..+.+.++.+.. ++||
T Consensus 131 v~~~~~~~g~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e~GAD~vKt~~~~---------~~~~l~~~~~~~--~ipV 199 (267)
T PRK07226 131 VAEECEEWGMPLLAMMYPRGPGIKNEYDPEVVAHAARVAAELGADIVKTNYTG---------DPESFREVVEGC--PVPV 199 (267)
T ss_pred HHHHHHHcCCcEEEEEecCCCccCCCccHHHHHHHHHHHHHHCCCEEeeCCCC---------CHHHHHHHHHhC--CCCE
Confidence 344444567887763 1123333 577889999999986321 356677776654 7999
Q ss_pred EEecCCC--CHHHHHHHH----HcCcCEEEEchHHHH
Q 015722 318 FLDGGVR--RGTDVFKAL----ALGASGVFVGRPVPF 348 (402)
Q Consensus 318 ia~GGI~--~g~dv~kal----~lGAd~V~iGr~~l~ 348 (402)
+++|||+ |.+++++.+ .+||+++.+||.++.
T Consensus 200 ~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~ 236 (267)
T PRK07226 200 VIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQ 236 (267)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhc
Confidence 9999999 777777765 899999999998775
No 164
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=97.99 E-value=0.00033 Score=67.54 Aligned_cols=157 Identities=18% Similarity=0.224 Sum_probs=95.2
Q ss_pred cCChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCC--CccccccccccccccCCCCCchhhHHHhhhhcC
Q 015722 166 TKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLP--PHLTLKNYEGLYIGKMDKTDDSGLASYVANQID 243 (402)
Q Consensus 166 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 243 (402)
..|.+.+.++++...+.|++.|.|.+ |.. -| .+.... .+....+....+
T Consensus 20 ~P~~~~~~~~~~~l~~~GaD~iEiGi--PfS------------DP~ADGpvIq---------------~A~~rAL~~G~~ 70 (259)
T PF00290_consen 20 YPDLETTLEILKALEEAGADIIEIGI--PFS------------DPVADGPVIQ---------------KASQRALKNGFT 70 (259)
T ss_dssp SSSHHHHHHHHHHHHHTTBSSEEEE----SS------------SCTTSSHHHH---------------HHHHHHHHTT--
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECC--CCC------------CCCCCCHHHH---------------HHHHHHHHCCCC
Confidence 44678899999999999999998854 321 11 111110 011112222122
Q ss_pred CCccHHHHHHHH-HccCccEEEEecc------CH-HHHHHHHHhCCcEEEEec---------------Cccc--------
Q 015722 244 RSLNWKDVKWLQ-TITSLPILVKGVL------TA-EDASLAIQYGAAGIIVSN---------------HGAR-------- 292 (402)
Q Consensus 244 ~~~~~~~i~~lr-~~~~~Pv~vK~~~------~~-~da~~a~~aGad~I~vsn---------------~gg~-------- 292 (402)
....++.++++| +..+.|+++=+=. .. +-++.|.++|+|++++-. ||=.
T Consensus 71 ~~~~~~~~~~ir~~~~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p~ 150 (259)
T PF00290_consen 71 LEKIFELVKEIRKKEPDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHGLDLIPLVAPT 150 (259)
T ss_dssp HHHHHHHHHHHHHHCTSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT-EEEEEEETT
T ss_pred HHHHHHHHHHHhccCCCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcCCeEEEEECCC
Confidence 223457789999 7778998764321 12 246788899999999832 1100
Q ss_pred -C-------------------C---CCCcc-----hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEch
Q 015722 293 -Q-------------------L---DYVPA-----TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGR 344 (402)
Q Consensus 293 -~-------------------~---d~~~~-----~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr 344 (402)
. . .+... ..+.+..+++.. ++||.+-=||++++|+.+.. .|||+|.||+
T Consensus 151 t~~~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~--~~Pv~vGFGI~~~e~~~~~~-~~aDGvIVGS 227 (259)
T PF00290_consen 151 TPEERIKKIAKQASGFIYLVSRMGVTGSRTELPDELKEFIKRIKKHT--DLPVAVGFGISTPEQAKKLA-AGADGVIVGS 227 (259)
T ss_dssp S-HHHHHHHHHH-SSEEEEESSSSSSSTTSSCHHHHHHHHHHHHHTT--SS-EEEESSS-SHHHHHHHH-TTSSEEEESH
T ss_pred CCHHHHHHHHHhCCcEEEeeccCCCCCCcccchHHHHHHHHHHHhhc--CcceEEecCCCCHHHHHHHH-ccCCEEEECH
Confidence 0 0 01111 124456665554 79999977999999999888 9999999999
Q ss_pred HHHHhhhcCC
Q 015722 345 PVPFSLAVDG 354 (402)
Q Consensus 345 ~~l~~~~~~G 354 (402)
+++.-+...+
T Consensus 228 a~v~~i~~~~ 237 (259)
T PF00290_consen 228 AFVKIIEENG 237 (259)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHcc
Confidence 9998765444
No 165
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=97.99 E-value=0.0031 Score=61.62 Aligned_cols=109 Identities=17% Similarity=0.242 Sum_probs=76.0
Q ss_pred ccCHHHHHHHH-HhCCcEEEEe--c-CcccCCCCCcchHHHHHHHHHHhcCCCeEEEec--CCCCHHHHHHHHHcCcCEE
Q 015722 267 VLTAEDASLAI-QYGAAGIIVS--N-HGARQLDYVPATVMALEEVVQAAKGRVPVFLDG--GVRRGTDVFKALALGASGV 340 (402)
Q Consensus 267 ~~~~~da~~a~-~aGad~I~vs--n-~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~G--GI~~g~dv~kal~lGAd~V 340 (402)
..++++++.+. +.|+|++-++ + ||-+ .+..+-.++.|.++++.+ ++|+++-| ||. .+++.+++..|++.|
T Consensus 152 ~t~~eea~~f~~~tg~DyLAvaiG~~hg~~-~~~~~l~~~~L~~i~~~~--~iPlV~hG~SGI~-~e~~~~~i~~G~~ki 227 (281)
T PRK06806 152 LTSTTEAKRFAEETDVDALAVAIGNAHGMY-NGDPNLRFDRLQEINDVV--HIPLVLHGGSGIS-PEDFKKCIQHGIRKI 227 (281)
T ss_pred eCCHHHHHHHHHhhCCCEEEEccCCCCCCC-CCCCccCHHHHHHHHHhc--CCCEEEECCCCCC-HHHHHHHHHcCCcEE
Confidence 36889998887 4699999994 3 4432 222234688999999887 79999999 987 899999999999999
Q ss_pred EEchHHHHhhhc-------CCh-----HHHHHHHHHHHHHHHHHHHHhCCC
Q 015722 341 FVGRPVPFSLAV-------DGE-----AGVRKVLQMLRDEFELTMALSGCR 379 (402)
Q Consensus 341 ~iGr~~l~~~~~-------~G~-----~gv~~~i~~l~~el~~~m~~~G~~ 379 (402)
-+.+.+..+... ..+ .-.....+.+++.++..|..+|..
T Consensus 228 nv~T~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gs~ 278 (281)
T PRK06806 228 NVATATFNSVITAVNNLVLNTPYSDYFTYHQDVIKAAYENVKKHMQIFGSE 278 (281)
T ss_pred EEhHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999987653210 000 112233345566666666666643
No 166
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=97.99 E-value=0.00022 Score=70.86 Aligned_cols=188 Identities=14% Similarity=0.188 Sum_probs=108.8
Q ss_pred HHHhhcCCCceEEEEeecCChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhh----cCCCCccccccccccccc
Q 015722 149 EEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNR----FVLPPHLTLKNYEGLYIG 224 (402)
Q Consensus 149 eei~~~~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~----~~~p~~~~~~~~~~~~~~ 224 (402)
.|+++++|...++. ..-|+ .++++..++.|+.+|-|-.|...++....+++.. ..+| +-.+.|. ++..
T Consensus 123 AEvKrASPSkG~I~--~~~dp---~~iA~~Ye~~GA~aISVLTd~~~F~Gs~e~L~~vr~~~v~lP--vLrKDFI-ID~y 194 (338)
T PLN02460 123 AEVKKASPSRGVLR--ENFDP---VEIAQAYEKGGAACLSVLTDEKYFQGSFENLEAIRNAGVKCP--LLCKEFI-VDAW 194 (338)
T ss_pred eeeccCCCCCCccC--CCCCH---HHHHHHHHhCCCcEEEEecCcCcCCCCHHHHHHHHHcCCCCC--Eeecccc-CCHH
Confidence 45566666322221 12233 3566677889999999999988887777666532 2333 1111110 0111
Q ss_pred cCCCCCchhhHH--HhhhhcCCCccHHHHHHHHHccCccEEEEeccCHHHHHHHHHh-CCcEEEEecCcccCCCCCcchH
Q 015722 225 KMDKTDDSGLAS--YVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQY-GAAGIIVSNHGARQLDYVPATV 301 (402)
Q Consensus 225 ~~~~~~~~~~~~--~~~~~~d~~~~~~~i~~lr~~~~~Pv~vK~~~~~~da~~a~~a-Gad~I~vsn~gg~~~d~~~~~~ 301 (402)
++..+...|+.. .+....++ ...+.+-.+....++-++| .+.+.++++++.++ |++-|-|.|..-..+ ...+
T Consensus 195 QI~eAr~~GADAVLLIaaiL~~-~~L~~l~~~A~~LGme~LV-EVH~~~ElerAl~~~ga~iIGINNRdL~Tf---~vDl 269 (338)
T PLN02460 195 QIYYARSKGADAILLIAAVLPD-LDIKYMLKICKSLGMAALI-EVHDEREMDRVLGIEGVELIGINNRSLETF---EVDI 269 (338)
T ss_pred HHHHHHHcCCCcHHHHHHhCCH-HHHHHHHHHHHHcCCeEEE-EeCCHHHHHHHHhcCCCCEEEEeCCCCCcc---eECH
Confidence 111111111111 11111111 1223333333445665544 67899999999998 999999988532222 2223
Q ss_pred HHHHHHHH-----Hh-cCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHHHh
Q 015722 302 MALEEVVQ-----AA-KGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFS 349 (402)
Q Consensus 302 ~~l~~i~~-----~~-~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~~ 349 (402)
+...++.. .+ +.++-+++.+||+|++|+.....+|||+|.||..++..
T Consensus 270 ~~t~~L~~~~~~~~i~~~~~~~VsESGI~t~~Dv~~l~~~GadAvLVGEsLMr~ 323 (338)
T PLN02460 270 SNTKKLLEGERGEQIREKGIIVVGESGLFTPDDVAYVQNAGVKAVLVGESLVKQ 323 (338)
T ss_pred HHHHHHhhhccccccCCCCeEEEECCCCCCHHHHHHHHHCCCCEEEECHHHhCC
Confidence 33333333 22 23567899999999999999999999999999999874
No 167
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=97.99 E-value=0.0002 Score=65.93 Aligned_cols=93 Identities=23% Similarity=0.195 Sum_probs=68.0
Q ss_pred HHHHHHHccCccEEE--EeccCHHHHHHHHHhCCcEEEEecCcccCCCC-CcchHHHHHHHHHHhcCCCeEEEecCCCCH
Q 015722 250 DVKWLQTITSLPILV--KGVLTAEDASLAIQYGAAGIIVSNHGARQLDY-VPATVMALEEVVQAAKGRVPVFLDGGVRRG 326 (402)
Q Consensus 250 ~i~~lr~~~~~Pv~v--K~~~~~~da~~a~~aGad~I~vsn~gg~~~d~-~~~~~~~l~~i~~~~~~~i~via~GGI~~g 326 (402)
.++.+++ .++++++ =+..|++++..+.+.|+|.+.+. .+...... .+...+.+.++++. .++||+++|||+ .
T Consensus 95 ~i~~~~~-~g~~~~v~~~~~~t~~e~~~~~~~~~d~v~~~-~~~~~~~~~~~~~~~~i~~~~~~--~~~~i~~~GGI~-~ 169 (202)
T cd04726 95 AVKAAKK-YGKEVQVDLIGVEDPEKRAKLLKLGVDIVILH-RGIDAQAAGGWWPEDDLKKVKKL--LGVKVAVAGGIT-P 169 (202)
T ss_pred HHHHHHH-cCCeEEEEEeCCCCHHHHHHHHHCCCCEEEEc-CcccccccCCCCCHHHHHHHHhh--cCCCEEEECCcC-H
Confidence 4555554 4666665 45678888888899999998883 11111111 34456777777765 379999999996 9
Q ss_pred HHHHHHHHcCcCEEEEchHHH
Q 015722 327 TDVFKALALGASGVFVGRPVP 347 (402)
Q Consensus 327 ~dv~kal~lGAd~V~iGr~~l 347 (402)
+++.+++..|||+|.+||++.
T Consensus 170 ~~i~~~~~~Gad~vvvGsai~ 190 (202)
T cd04726 170 DTLPEFKKAGADIVIVGRAIT 190 (202)
T ss_pred HHHHHHHhcCCCEEEEeehhc
Confidence 999999999999999999975
No 168
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=97.96 E-value=9.8e-05 Score=66.98 Aligned_cols=78 Identities=24% Similarity=0.229 Sum_probs=61.0
Q ss_pred cCHHHHHHHHHhCCcEEEEecCcccCC--C-CCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEch
Q 015722 268 LTAEDASLAIQYGAAGIIVSNHGARQL--D-YVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGR 344 (402)
Q Consensus 268 ~~~~da~~a~~aGad~I~vsn~gg~~~--d-~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr 344 (402)
.+.++++.+.+.|+|.|.++....+.. . ..+..++.+.++++.. ++||++.|||. .+++.+++.+||++|.+|+
T Consensus 103 ~t~~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~pv~a~GGi~-~~~i~~~~~~Ga~~i~~g~ 179 (196)
T cd00564 103 HSLEEALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAELV--EIPVVAIGGIT-PENAAEVLAAGADGVAVIS 179 (196)
T ss_pred CCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEECCCC-HHHHHHHHHcCCCEEEEeh
Confidence 578899999999999999864311111 1 1345677888887654 79999999995 7999999999999999999
Q ss_pred HHHH
Q 015722 345 PVPF 348 (402)
Q Consensus 345 ~~l~ 348 (402)
.++.
T Consensus 180 ~i~~ 183 (196)
T cd00564 180 AITG 183 (196)
T ss_pred Hhhc
Confidence 8764
No 169
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=97.96 E-value=0.00094 Score=62.96 Aligned_cols=137 Identities=20% Similarity=0.215 Sum_probs=90.6
Q ss_pred cCChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCC
Q 015722 166 TKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRS 245 (402)
Q Consensus 166 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 245 (402)
..|.....+.+++++++|++.+ ++|.-- | .| +| +-.
T Consensus 8 ~ad~~~l~~~i~~l~~~g~~~l--H~DvmD-G--------~F-vp--------------------------------n~t 43 (220)
T PRK08883 8 SADFARLGEDVEKVLAAGADVV--HFDVMD-N--------HY-VP--------------------------------NLT 43 (220)
T ss_pred hcCHHHHHHHHHHHHHcCCCEE--EEeccc-C--------cc-cC--------------------------------ccc
Confidence 4577788899999999999886 444210 0 01 11 112
Q ss_pred ccHHHHHHHHHc-cCccEEEEe-ccCHHH-HHHHHHhCCcEEEEecC---------------cc---------cC-----
Q 015722 246 LNWKDVKWLQTI-TSLPILVKG-VLTAED-ASLAIQYGAAGIIVSNH---------------GA---------RQ----- 293 (402)
Q Consensus 246 ~~~~~i~~lr~~-~~~Pv~vK~-~~~~~d-a~~a~~aGad~I~vsn~---------------gg---------~~----- 293 (402)
+..+.++++|+. ++.|+=+-. +.+++. ++...++|+|.|++.-- |- +.
T Consensus 44 fg~~~i~~i~~~~~~~~~dvHLMv~~p~~~i~~~~~~gad~i~~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~ 123 (220)
T PRK08883 44 FGAPICKALRDYGITAPIDVHLMVKPVDRIIPDFAKAGASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPLHHLE 123 (220)
T ss_pred cCHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHcCCcEEEEeCCCCCHHHHH
Confidence 455778888887 577766654 345554 56777888888888410 10 00
Q ss_pred -----CC-----------CC----cchHHHHHHHHHHhcC---CCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHH
Q 015722 294 -----LD-----------YV----PATVMALEEVVQAAKG---RVPVFLDGGVRRGTDVFKALALGASGVFVGRPVP 347 (402)
Q Consensus 294 -----~d-----------~~----~~~~~~l~~i~~~~~~---~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l 347 (402)
.| +| +..++-+.++++.... ++||.++|||. .+.+.+...+|||.+.+||.+.
T Consensus 124 ~~l~~~D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~-~eni~~l~~aGAd~vVvGSaIf 199 (220)
T PRK08883 124 YIMDKVDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVK-VDNIREIAEAGADMFVAGSAIF 199 (220)
T ss_pred HHHHhCCeEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcCCCEEEEeHHHh
Confidence 01 12 2344566666655421 48999999999 8999999999999999999854
No 170
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=97.95 E-value=8.6e-05 Score=70.39 Aligned_cols=78 Identities=22% Similarity=0.330 Sum_probs=63.4
Q ss_pred ccCHHHHHHHHHhCCcEEEEecCc-ccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchH
Q 015722 267 VLTAEDASLAIQYGAAGIIVSNHG-ARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRP 345 (402)
Q Consensus 267 ~~~~~da~~a~~aGad~I~vsn~g-g~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~ 345 (402)
..++-.|++++++||..|.--+.. | ...|..+...|.-|++.. ++||+.++||.+++|+.+++.+|||+|++.+.
T Consensus 145 ~~D~v~a~rLed~Gc~aVMPlgsPIG--Sg~Gl~n~~~l~~i~e~~--~vpVivdAGIgt~sDa~~AmElGaDgVL~nSa 220 (267)
T CHL00162 145 NADPMLAKHLEDIGCATVMPLGSPIG--SGQGLQNLLNLQIIIENA--KIPVIIDAGIGTPSEASQAMELGASGVLLNTA 220 (267)
T ss_pred CCCHHHHHHHHHcCCeEEeeccCccc--CCCCCCCHHHHHHHHHcC--CCcEEEeCCcCCHHHHHHHHHcCCCEEeecce
Confidence 356788999999999999863320 1 113566778888888754 79999999999999999999999999999998
Q ss_pred HHH
Q 015722 346 VPF 348 (402)
Q Consensus 346 ~l~ 348 (402)
+..
T Consensus 221 Iak 223 (267)
T CHL00162 221 VAQ 223 (267)
T ss_pred eec
Confidence 764
No 171
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=97.94 E-value=0.0002 Score=67.77 Aligned_cols=82 Identities=28% Similarity=0.426 Sum_probs=60.3
Q ss_pred HccCccEEEEec---------cCHHH----HHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecC
Q 015722 256 TITSLPILVKGV---------LTAED----ASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGG 322 (402)
Q Consensus 256 ~~~~~Pv~vK~~---------~~~~d----a~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GG 322 (402)
...++|+++=.. .+.++ ++.+.++|+|.|.+++.+ .++.+.++.+.. ++||++.||
T Consensus 119 ~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~~~~~---------~~~~~~~i~~~~--~~pvv~~GG 187 (235)
T cd00958 119 HKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVKTKYTG---------DAESFKEVVEGC--PVPVVIAGG 187 (235)
T ss_pred HHcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHHCCCEEEecCCC---------CHHHHHHHHhcC--CCCEEEeCC
Confidence 345788876321 12333 455889999999995422 467788887765 689999999
Q ss_pred C--CCHHH----HHHHHHcCcCEEEEchHHHH
Q 015722 323 V--RRGTD----VFKALALGASGVFVGRPVPF 348 (402)
Q Consensus 323 I--~~g~d----v~kal~lGAd~V~iGr~~l~ 348 (402)
| .+.+| +..++.+||++|.+||.++.
T Consensus 188 ~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~i~~ 219 (235)
T cd00958 188 PKKDSEEEFLKMVYDAMEAGAAGVAVGRNIFQ 219 (235)
T ss_pred CCCCCHHHHHHHHHHHHHcCCcEEEechhhhc
Confidence 8 66666 67778899999999999875
No 172
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=97.93 E-value=7.1e-05 Score=71.59 Aligned_cols=101 Identities=17% Similarity=0.026 Sum_probs=74.7
Q ss_pred cHHHHHHHHHccCccEEEE-eccCHHHHHHHHHhCCcEEEEecC---------------ccc--------------C---
Q 015722 247 NWKDVKWLQTITSLPILVK-GVLTAEDASLAIQYGAAGIIVSNH---------------GAR--------------Q--- 293 (402)
Q Consensus 247 ~~~~i~~lr~~~~~Pv~vK-~~~~~~da~~a~~aGad~I~vsn~---------------gg~--------------~--- 293 (402)
..+.++.+.+.+..|+.+. |+.+.++++.+.+.|+|.|+++.. |.+ .
T Consensus 62 n~~~i~~i~~~~~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~a~~~p~~~~~~~~~~g~~ivvslD~k~~g~~~~v~~ 141 (243)
T TIGR01919 62 NEMMLEEVVKLLVVVEELSGGRRDDSSLRAALTGGRARVNGGTAALENPWWAAAVIRYGGDIVAVGLDVLEDGEWHTLGN 141 (243)
T ss_pred hHHHHHHHHHHCCCCEEEcCCCCCHHHHHHHHHcCCCEEEECchhhCCHHHHHHHHHHccccEEEEEEEecCCceEEEEC
Confidence 3467888888888999886 468999999999999999988521 110 0
Q ss_pred -------C------------------------CC--CcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHH---HcCc
Q 015722 294 -------L------------------------DY--VPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKAL---ALGA 337 (402)
Q Consensus 294 -------~------------------------d~--~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal---~lGA 337 (402)
. |+ .-+.++.+.++++.. ++|||++|||++-+|+.+.- ..|+
T Consensus 142 ~Gw~~~~~~~~~~~~~~~~~g~~~ii~tdI~~dGt~~G~d~~l~~~l~~~~--~~pviasGGv~s~eDl~~l~~l~~~Gv 219 (243)
T TIGR01919 142 RGWSDGGGDLEVLERLLDSGGCSRVVVTDSKKDGLSGGPNELLLEVVAART--DAIVAASGGSSLLDDLRAIKYLDEGGV 219 (243)
T ss_pred CCeecCCCcHHHHHHHHHhCCCCEEEEEecCCcccCCCcCHHHHHHHHhhC--CCCEEEECCcCCHHHHHHHHhhccCCe
Confidence 0 01 123445556655554 79999999999999999864 3599
Q ss_pred CEEEEchHHHHh
Q 015722 338 SGVFVGRPVPFS 349 (402)
Q Consensus 338 d~V~iGr~~l~~ 349 (402)
++|.+|++++.+
T Consensus 220 ~gvivg~Al~~g 231 (243)
T TIGR01919 220 SVAIGGKLLYAR 231 (243)
T ss_pred eEEEEhHHHHcC
Confidence 999999998754
No 173
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=97.92 E-value=0.00037 Score=64.29 Aligned_cols=46 Identities=13% Similarity=0.130 Sum_probs=36.3
Q ss_pred HHHHHHHHHhc---CCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHHH
Q 015722 302 MALEEVVQAAK---GRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 348 (402)
Q Consensus 302 ~~l~~i~~~~~---~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~ 348 (402)
+.+.++++... .++||++.|||+. +++.+++..|||+|.+||+++.
T Consensus 151 ~~i~~~~~~~~~~~~~~pi~v~GGI~~-env~~~~~~gad~iivgsai~~ 199 (211)
T cd00429 151 EKIRKLRELIPENNLNLLIEVDGGINL-ETIPLLAEAGADVLVAGSALFG 199 (211)
T ss_pred HHHHHHHHHHHhcCCCeEEEEECCCCH-HHHHHHHHcCCCEEEECHHHhC
Confidence 44555554442 1489999999995 9999999999999999999874
No 174
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=97.90 E-value=0.0023 Score=59.89 Aligned_cols=100 Identities=20% Similarity=0.156 Sum_probs=76.2
Q ss_pred HHHHHHHHccCccEEEEeccCHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhc---CCCeEEEecCCCC
Q 015722 249 KDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAK---GRVPVFLDGGVRR 325 (402)
Q Consensus 249 ~~i~~lr~~~~~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~---~~i~via~GGI~~ 325 (402)
+.++.+++. ++++.+-.+.+.+.+..+.++|++.|.. +-||--+.|...++.+.++.+.+. .+..|++ .|+++
T Consensus 92 ~ai~~L~~~-gi~v~~T~V~s~~Qa~~Aa~AGA~yvsP--~vgR~~~~g~dg~~~i~~i~~~~~~~~~~tkil~-As~r~ 167 (211)
T cd00956 92 KAIKKLSEE-GIKTNVTAIFSAAQALLAAKAGATYVSP--FVGRIDDLGGDGMELIREIRTIFDNYGFDTKILA-ASIRN 167 (211)
T ss_pred HHHHHHHHc-CCceeeEEecCHHHHHHHHHcCCCEEEE--ecChHhhcCCCHHHHHHHHHHHHHHcCCCceEEe-cccCC
Confidence 455666554 7888888899999999999999998554 545544556666677777766552 2344555 56999
Q ss_pred HHHHHHHHHcCcCEEEEchHHHHhhhc
Q 015722 326 GTDVFKALALGASGVFVGRPVPFSLAV 352 (402)
Q Consensus 326 g~dv~kal~lGAd~V~iGr~~l~~~~~ 352 (402)
..++..++.+|||.|-+.-.++..+..
T Consensus 168 ~~ei~~a~~~Gad~vTv~~~vl~~l~~ 194 (211)
T cd00956 168 PQHVIEAALAGADAITLPPDVLEQLLK 194 (211)
T ss_pred HHHHHHHHHcCCCEEEeCHHHHHHHhc
Confidence 999999999999999999988876643
No 175
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=97.87 E-value=0.007 Score=59.20 Aligned_cols=109 Identities=16% Similarity=0.304 Sum_probs=78.8
Q ss_pred ccCHHHHHHHHH-hCCcEEEEe--c-CcccCCCCCcchHHHHHHHHHHhcCCCeEEEec--CCCCHHHHHHHHHcCcCEE
Q 015722 267 VLTAEDASLAIQ-YGAAGIIVS--N-HGARQLDYVPATVMALEEVVQAAKGRVPVFLDG--GVRRGTDVFKALALGASGV 340 (402)
Q Consensus 267 ~~~~~da~~a~~-aGad~I~vs--n-~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~G--GI~~g~dv~kal~lGAd~V 340 (402)
..++++|+.+.+ .|+|.+.++ + ||-+. ....-.++.|.+|++.+ ++|+++=| ||. .+++.+++.+|++.|
T Consensus 152 ~t~~eea~~f~~~tgvD~Lavs~Gt~hg~~~-~~~~l~~e~L~~i~~~~--~iPlv~hGgSGi~-~e~i~~~i~~Gi~ki 227 (282)
T TIGR01859 152 LADPDEAEQFVKETGVDYLAAAIGTSHGKYK-GEPGLDFERLKEIKELT--NIPLVLHGASGIP-EEQIKKAIKLGIAKI 227 (282)
T ss_pred cCCHHHHHHHHHHHCcCEEeeccCccccccC-CCCccCHHHHHHHHHHh--CCCEEEECCCCCC-HHHHHHHHHcCCCEE
Confidence 358999999886 999999975 2 44221 12334588999999988 79999999 997 788999999999999
Q ss_pred EEchHHHHhhhc-------C-----C-hHHHHHHHHHHHHHHHHHHHHhCCC
Q 015722 341 FVGRPVPFSLAV-------D-----G-EAGVRKVLQMLRDEFELTMALSGCR 379 (402)
Q Consensus 341 ~iGr~~l~~~~~-------~-----G-~~gv~~~i~~l~~el~~~m~~~G~~ 379 (402)
-++|-+..+... . . ..-.....+.+.+.+++.|..+|..
T Consensus 228 Nv~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~gs~ 279 (282)
T TIGR01859 228 NIDTDCRIAFTAAIRKVLTEKKDEYDPRKILGPAREAIKETVKEKMRLFGSA 279 (282)
T ss_pred EECcHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999977544211 0 0 1223445566777778888887754
No 176
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=97.86 E-value=0.00089 Score=65.10 Aligned_cols=87 Identities=23% Similarity=0.242 Sum_probs=63.3
Q ss_pred HHHHHHHHccCccEEEEeccCHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhc---CCCeEEEecCCCC
Q 015722 249 KDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAK---GRVPVFLDGGVRR 325 (402)
Q Consensus 249 ~~i~~lr~~~~~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~---~~i~via~GGI~~ 325 (402)
+.++.+|+..+...+.-.+.+.+++..+.++|+|.|.++|-. +. .+.++.+.++ .++|++++||| +
T Consensus 172 ~av~~~R~~~~~~~IgVev~t~eea~~A~~~gaD~I~ld~~~-------p~---~l~~~~~~~~~~~~~i~i~AsGGI-~ 240 (272)
T cd01573 172 KALARLRATAPEKKIVVEVDSLEEALAAAEAGADILQLDKFS-------PE---ELAELVPKLRSLAPPVLLAAAGGI-N 240 (272)
T ss_pred HHHHHHHHhCCCCeEEEEcCCHHHHHHHHHcCCCEEEECCCC-------HH---HHHHHHHHHhccCCCceEEEECCC-C
Confidence 557888876532223234578999999999999999997531 22 2334443332 36999999999 6
Q ss_pred HHHHHHHHHcCcCEEEEchHH
Q 015722 326 GTDVFKALALGASGVFVGRPV 346 (402)
Q Consensus 326 g~dv~kal~lGAd~V~iGr~~ 346 (402)
.+.+.++..+|+|++.+|..+
T Consensus 241 ~~ni~~~~~~Gvd~I~vsai~ 261 (272)
T cd01573 241 IENAAAYAAAGADILVTSAPY 261 (272)
T ss_pred HHHHHHHHHcCCcEEEEChhh
Confidence 999999999999999877754
No 177
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=97.85 E-value=9.7e-05 Score=69.67 Aligned_cols=76 Identities=29% Similarity=0.355 Sum_probs=62.1
Q ss_pred HHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHHH
Q 015722 270 AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 348 (402)
Q Consensus 270 ~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~ 348 (402)
.+.|+...+.|+|.+.+..--+. ..+....++.+.++.+.+ .+||++.|||++.+|+.+++.+|||.|++|+..+.
T Consensus 32 ~~~a~~~~~~g~d~l~v~dl~~~-~~~~~~~~~~i~~i~~~~--~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~l~ 107 (234)
T cd04732 32 VEVAKKWEEAGAKWLHVVDLDGA-KGGEPVNLELIEEIVKAV--GIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAAVK 107 (234)
T ss_pred HHHHHHHHHcCCCEEEEECCCcc-ccCCCCCHHHHHHHHHhc--CCCEEEeCCcCCHHHHHHHHHcCCCEEEECchHHh
Confidence 46678888999999999743221 123456788999998887 79999999999999999999999999999997753
No 178
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=97.84 E-value=0.00018 Score=67.77 Aligned_cols=75 Identities=24% Similarity=0.286 Sum_probs=62.0
Q ss_pred HHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHHH
Q 015722 271 EDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 348 (402)
Q Consensus 271 ~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~ 348 (402)
+-|+...+.|+|.+.+..-.|. ..+....++.+.++++.+ .+||+++|||++.+|+.+++.+||+.|.+|+.++.
T Consensus 34 ~~a~~~~~~g~~~i~v~dld~~-~~g~~~~~~~i~~i~~~~--~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~~~l~ 108 (233)
T PRK00748 34 AQAKAWEDQGAKWLHLVDLDGA-KAGKPVNLELIEAIVKAV--DIPVQVGGGIRSLETVEALLDAGVSRVIIGTAAVK 108 (233)
T ss_pred HHHHHHHHcCCCEEEEEeCCcc-ccCCcccHHHHHHHHHHC--CCCEEEcCCcCCHHHHHHHHHcCCCEEEECchHHh
Confidence 4577788899999999763221 123456788999998876 79999999999999999999999999999998875
No 179
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=97.82 E-value=0.00013 Score=69.28 Aligned_cols=95 Identities=26% Similarity=0.374 Sum_probs=62.4
Q ss_pred HHHHHHHH---ccCccEEEEeccCHHH-------------HHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhc
Q 015722 249 KDVKWLQT---ITSLPILVKGVLTAED-------------ASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAK 312 (402)
Q Consensus 249 ~~i~~lr~---~~~~Pv~vK~~~~~~d-------------a~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~ 312 (402)
+++..+++ .+.+|+++-..+..++ ++.+.++|+|.|.++.. +. ........+.+.++.+..
T Consensus 112 ~~i~~v~~~~~~~gl~vIlE~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg-~~-~~~t~~~~~~~~~~~~~~- 188 (236)
T PF01791_consen 112 EEIAAVVEECHKYGLKVILEPYLRGEEVADEKKPDLIARAARIAAELGADFVKTSTG-KP-VGATPEDVELMRKAVEAA- 188 (236)
T ss_dssp HHHHHHHHHHHTSEEEEEEEECECHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-S-SS-SCSHHHHHHHHHHHHHTH-
T ss_pred HHHHHHHHHHhcCCcEEEEEEecCchhhcccccHHHHHHHHHHHHHhCCCEEEecCC-cc-ccccHHHHHHHHHHHHhc-
Confidence 44444444 4478888875444333 46778999999999743 11 111223344455554433
Q ss_pred CCCe----EEEecCC------CCHHHHHHHHHcCc--CEEEEchHHH
Q 015722 313 GRVP----VFLDGGV------RRGTDVFKALALGA--SGVFVGRPVP 347 (402)
Q Consensus 313 ~~i~----via~GGI------~~g~dv~kal~lGA--d~V~iGr~~l 347 (402)
.+| |.++||| ++.+++.+++.+|| .++..||.+.
T Consensus 189 -~~p~~~~Vk~sGGi~~~~~~~~l~~a~~~i~aGa~~~G~~~Gr~i~ 234 (236)
T PF01791_consen 189 -PVPGKVGVKASGGIDAEDFLRTLEDALEFIEAGADRIGTSSGRNIW 234 (236)
T ss_dssp -SSTTTSEEEEESSSSHHHHHHSHHHHHHHHHTTHSEEEEEEHHHHH
T ss_pred -CCCcceEEEEeCCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 455 9999999 99999999999999 8888888653
No 180
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=97.80 E-value=0.0018 Score=61.36 Aligned_cols=154 Identities=16% Similarity=0.156 Sum_probs=99.5
Q ss_pred cCChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCC
Q 015722 166 TKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRS 245 (402)
Q Consensus 166 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 245 (402)
..|.....+.+++++++|++.+ |+|.-- | .| +| +-.
T Consensus 15 ~~d~~~l~~~~~~l~~~~~~~~--H~DimD-g--------~f-vp--------------------------------n~~ 50 (228)
T PTZ00170 15 AADFSKLADEAQDVLSGGADWL--HVDVMD-G--------HF-VP--------------------------------NLS 50 (228)
T ss_pred hcCHHHHHHHHHHHHHcCCCEE--EEeccc-C--------cc-CC--------------------------------CcC
Confidence 4577788899999999999886 445210 0 01 01 112
Q ss_pred ccHHHHHHHHHcc-CccEEEEec-cCHHH-HHHHHHhCCcEEEEecCcccC-C---------------------------
Q 015722 246 LNWKDVKWLQTIT-SLPILVKGV-LTAED-ASLAIQYGAAGIIVSNHGARQ-L--------------------------- 294 (402)
Q Consensus 246 ~~~~~i~~lr~~~-~~Pv~vK~~-~~~~d-a~~a~~aGad~I~vsn~gg~~-~--------------------------- 294 (402)
+..+.++++|+.+ ++|+-+|.- .+++. ++.+.++|+|.|++...++.. +
T Consensus 51 ~G~~~v~~lr~~~~~~~lDvHLm~~~p~~~i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G~~~gval~p~t~~e~l 130 (228)
T PTZ00170 51 FGPPVVKSLRKHLPNTFLDCHLMVSNPEKWVDDFAKAGASQFTFHIEATEDDPKAVARKIREAGMKVGVAIKPKTPVEVL 130 (228)
T ss_pred cCHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHCCCeEEEEECCCCCHHHH
Confidence 3457899999988 899999975 55654 577889999999995322210 0
Q ss_pred ---------C------------CC---cchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHHHhh
Q 015722 295 ---------D------------YV---PATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSL 350 (402)
Q Consensus 295 ---------d------------~~---~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~~~ 350 (402)
| +. +..++-+.++++.. +.+.|.++|||+ .+.+.++..+|||.+.+||++..+
T Consensus 131 ~~~l~~~~vD~Vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~-~~~~I~VdGGI~-~~ti~~~~~aGad~iVvGsaI~~a- 207 (228)
T PTZ00170 131 FPLIDTDLVDMVLVMTVEPGFGGQSFMHDMMPKVRELRKRY-PHLNIQVDGGIN-LETIDIAADAGANVIVAGSSIFKA- 207 (228)
T ss_pred HHHHccchhhhHHhhhcccCCCCcEecHHHHHHHHHHHHhc-ccCeEEECCCCC-HHHHHHHHHcCCCEEEEchHHhCC-
Confidence 0 00 11123334443332 257899999999 678889999999999999985421
Q ss_pred hcCChHHHHHHHHHHHHHHHH
Q 015722 351 AVDGEAGVRKVLQMLRDEFEL 371 (402)
Q Consensus 351 ~~~G~~gv~~~i~~l~~el~~ 371 (402)
+...+.++.++++++.
T Consensus 208 -----~d~~~~~~~i~~~~~~ 223 (228)
T PTZ00170 208 -----KDRKQAIELLRESVQK 223 (228)
T ss_pred -----CCHHHHHHHHHHHHHH
Confidence 1234556666666554
No 181
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=97.79 E-value=0.00047 Score=66.79 Aligned_cols=121 Identities=21% Similarity=0.169 Sum_probs=85.7
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCCccHHHHH
Q 015722 173 AQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVK 252 (402)
Q Consensus 173 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~ 252 (402)
.+..+-|+++|+..+.+++.||.. .+.. + | .. ..-+.++|+
T Consensus 27 ~~~a~iae~~g~~~v~~~~~~psd------~~~~----------------------g---g--~~------Rm~~p~~I~ 67 (293)
T PRK04180 27 AEQAKIAEEAGAVAVMALERVPAD------IRAA----------------------G---G--VA------RMADPKMIE 67 (293)
T ss_pred HHHHHHHHHhChHHHHHccCCCch------Hhhc----------------------C---C--ee------ecCCHHHHH
Confidence 456778899999999999999852 1100 0 0 00 011457889
Q ss_pred HHHHccCccEEEEecc-CHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHH
Q 015722 253 WLQTITSLPILVKGVL-TAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFK 331 (402)
Q Consensus 253 ~lr~~~~~Pv~vK~~~-~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~k 331 (402)
++++.+++||+.|.-. ...+|+.+.++|+|.|.-|..- .|.-+....+++.+ ++|+++ |++|-++++.
T Consensus 68 aIk~~V~iPVigk~Righ~~Ea~~L~~~GvDiID~Te~l-------rpad~~~~~~K~~f--~~~fma--d~~~l~EAlr 136 (293)
T PRK04180 68 EIMDAVSIPVMAKARIGHFVEAQILEALGVDYIDESEVL-------TPADEEYHIDKWDF--TVPFVC--GARNLGEALR 136 (293)
T ss_pred HHHHhCCCCeEEeehhhHHHHHHHHHHcCCCEEeccCCC-------CchHHHHHHHHHHc--CCCEEc--cCCCHHHHHH
Confidence 9999999999998754 4789999999999999643211 12334455555544 566654 7999999999
Q ss_pred HHHcCcCEEEEc
Q 015722 332 ALALGASGVFVG 343 (402)
Q Consensus 332 al~lGAd~V~iG 343 (402)
++.+|||.|.--
T Consensus 137 ai~~GadmI~Tt 148 (293)
T PRK04180 137 RIAEGAAMIRTK 148 (293)
T ss_pred HHHCCCCeeecc
Confidence 999999988543
No 182
>PRK04302 triosephosphate isomerase; Provisional
Probab=97.77 E-value=0.0017 Score=61.15 Aligned_cols=98 Identities=27% Similarity=0.304 Sum_probs=63.6
Q ss_pred HHHHHHHccCccEEEEeccCHHHHHHHHHhCCcEEEEecCc--ccCCCCCcchHHHHHHHHHHh---cCCCeEEEecCCC
Q 015722 250 DVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHG--ARQLDYVPATVMALEEVVQAA---KGRVPVFLDGGVR 324 (402)
Q Consensus 250 ~i~~lr~~~~~Pv~vK~~~~~~da~~a~~aGad~I~vsn~g--g~~~d~~~~~~~~l~~i~~~~---~~~i~via~GGI~ 324 (402)
.++..++ .++.+++ .+.+.++++.+.+.|.|.|.+-+.+ |+.......+.+.+.++.+.+ ..++||++.|||+
T Consensus 106 ~v~~a~~-~Gl~~I~-~v~~~~~~~~~~~~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~~~~pvi~GggI~ 183 (223)
T PRK04302 106 VVERAKK-LGLESVV-CVNNPETSAAAAALGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVNPDVKVLCGAGIS 183 (223)
T ss_pred HHHHHHH-CCCeEEE-EcCCHHHHHHHhcCCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhccCCCEEEEECCCC
Confidence 3445544 3554443 4567788888889999988764321 211110011222333332222 2368999999999
Q ss_pred CHHHHHHHHHcCcCEEEEchHHHHh
Q 015722 325 RGTDVFKALALGASGVFVGRPVPFS 349 (402)
Q Consensus 325 ~g~dv~kal~lGAd~V~iGr~~l~~ 349 (402)
+.+++..++..|||+|.+|+.++..
T Consensus 184 ~~e~~~~~~~~gadGvlVGsa~l~~ 208 (223)
T PRK04302 184 TGEDVKAALELGADGVLLASGVVKA 208 (223)
T ss_pred CHHHHHHHHcCCCCEEEEehHHhCC
Confidence 9999999999999999999998853
No 183
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=97.74 E-value=0.00044 Score=63.46 Aligned_cols=81 Identities=25% Similarity=0.214 Sum_probs=62.4
Q ss_pred eccCHHHHHHHHHhCCcEEEEecCcccCCCC---CcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEE
Q 015722 266 GVLTAEDASLAIQYGAAGIIVSNHGARQLDY---VPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFV 342 (402)
Q Consensus 266 ~~~~~~da~~a~~aGad~I~vsn~gg~~~d~---~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~i 342 (402)
.+.+.+++..+.+.|+|.|.++.-..+..+. .+..++.+.++++... ++||++.||| +.+++.+++.+||++|.+
T Consensus 102 s~h~~~e~~~a~~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~-~~pv~a~GGI-~~~~~~~~~~~G~~gva~ 179 (196)
T TIGR00693 102 STHNLEELAEAEAEGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSI-DIPIVAIGGI-TLENAAEVLAAGADGVAV 179 (196)
T ss_pred eCCCHHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcC-CCCEEEECCc-CHHHHHHHHHcCCCEEEE
Confidence 4578899989999999999987543222211 2235677888776542 5999999999 589999999999999999
Q ss_pred chHHHH
Q 015722 343 GRPVPF 348 (402)
Q Consensus 343 Gr~~l~ 348 (402)
|+.+..
T Consensus 180 ~~~i~~ 185 (196)
T TIGR00693 180 VSAIMQ 185 (196)
T ss_pred hHHhhC
Confidence 998763
No 184
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.74 E-value=0.0003 Score=68.43 Aligned_cols=89 Identities=16% Similarity=0.179 Sum_probs=67.6
Q ss_pred HHHHHHHHccCccEEEEeccCHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHH
Q 015722 249 KDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTD 328 (402)
Q Consensus 249 ~~i~~lr~~~~~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~d 328 (402)
+-++.+|+..+...+--.+.+.++++.+.++|+|.|.+.|- ..+.+.++++..++++|+.++|||. .+.
T Consensus 178 ~av~~~r~~~~~~~I~VEv~tleea~eA~~~gaD~I~LD~~----------~~e~l~~~v~~~~~~i~leAsGGIt-~~n 246 (277)
T PRK05742 178 QAVAAAHRIAPGKPVEVEVESLDELRQALAAGADIVMLDEL----------SLDDMREAVRLTAGRAKLEASGGIN-EST 246 (277)
T ss_pred HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhCCCCcEEEECCCC-HHH
Confidence 33677777643222223457899999999999999988642 3456666666555689999999995 999
Q ss_pred HHHHHHcCcCEEEEchHHHH
Q 015722 329 VFKALALGASGVFVGRPVPF 348 (402)
Q Consensus 329 v~kal~lGAd~V~iGr~~l~ 348 (402)
+.++..+|+|.+.+|.+...
T Consensus 247 i~~~a~tGvD~Isvg~lt~s 266 (277)
T PRK05742 247 LRVIAETGVDYISIGAMTKD 266 (277)
T ss_pred HHHHHHcCCCEEEEChhhcC
Confidence 99999999999999997654
No 185
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=97.73 E-value=0.0005 Score=64.86 Aligned_cols=95 Identities=14% Similarity=0.056 Sum_probs=67.4
Q ss_pred HHHHHHccCccEEEEe--ccCHHHHHHHHHhCCcEEEEecCcccCC-CCCcchHHHHHHHHHHhcCCCeEEEecCCCCHH
Q 015722 251 VKWLQTITSLPILVKG--VLTAEDASLAIQYGAAGIIVSNHGARQL-DYVPATVMALEEVVQAAKGRVPVFLDGGVRRGT 327 (402)
Q Consensus 251 i~~lr~~~~~Pv~vK~--~~~~~da~~a~~aGad~I~vsn~gg~~~-d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~ 327 (402)
+..+|+...--.++.. ..+.+++..+.+.|+|+|.++----+.. +..+..++.+.++++.+ ++||++-||| +.+
T Consensus 100 ~~~~r~~~~~~~iiG~s~~~s~~~a~~A~~~gaDYv~~Gpv~t~tK~~~~p~gl~~l~~~~~~~--~iPvvAIGGI-~~~ 176 (221)
T PRK06512 100 LAEAIEKHAPKMIVGFGNLRDRHGAMEIGELRPDYLFFGKLGADNKPEAHPRNLSLAEWWAEMI--EIPCIVQAGS-DLA 176 (221)
T ss_pred HHHHHHhcCCCCEEEecCCCCHHHHHHhhhcCCCEEEECCCCCCCCCCCCCCChHHHHHHHHhC--CCCEEEEeCC-CHH
Confidence 4555554422234443 2467888889999999999864321111 12233466777777665 7999999999 699
Q ss_pred HHHHHHHcCcCEEEEchHHHH
Q 015722 328 DVFKALALGASGVFVGRPVPF 348 (402)
Q Consensus 328 dv~kal~lGAd~V~iGr~~l~ 348 (402)
++.+++.+||++|.+-+.++.
T Consensus 177 n~~~~~~~GA~giAvisai~~ 197 (221)
T PRK06512 177 SAVEVAETGAEFVALERAVFD 197 (221)
T ss_pred HHHHHHHhCCCEEEEhHHhhC
Confidence 999999999999999998874
No 186
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=97.71 E-value=0.00015 Score=68.28 Aligned_cols=71 Identities=21% Similarity=0.294 Sum_probs=54.6
Q ss_pred HHHHHHhCCcEEEEecC--cccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHHHh
Q 015722 273 ASLAIQYGAAGIIVSNH--GARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFS 349 (402)
Q Consensus 273 a~~a~~aGad~I~vsn~--gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~~ 349 (402)
...+.+.|+ ++++..- -|+ ...+.++.+.++.+.+ ++|||++|||++.+|+.++..+||++|.+|++++.+
T Consensus 147 ~~~~~~~g~-~ii~tdI~~dGt---~~G~d~eli~~i~~~~--~~pvia~GGi~s~ed~~~l~~~Ga~~vivgsal~~g 219 (221)
T TIGR00734 147 RDFLNSFDY-GLIVLDIHSVGT---MKGPNLELLTKTLELS--EHPVMLGGGISGVEDLELLKEMGVSAVLVATAVHKG 219 (221)
T ss_pred HHHHHhcCC-EEEEEECCcccc---CCCCCHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHHCCCCEEEEhHHhhCC
Confidence 344556787 6665432 122 2235688899988876 799999999999999999888999999999998764
No 187
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=97.71 E-value=0.00043 Score=67.07 Aligned_cols=88 Identities=25% Similarity=0.229 Sum_probs=68.6
Q ss_pred HHHHHHHHccC-ccEEEEeccCHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHH
Q 015722 249 KDVKWLQTITS-LPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGT 327 (402)
Q Consensus 249 ~~i~~lr~~~~-~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~ 327 (402)
..++.+|+..+ ...+.--+.+.++++.|.++|+|+|.+.|- ..+.++++.+.+..++||.++|||. .+
T Consensus 166 ~av~~~r~~~~~~~~Igvev~t~eea~~A~~~gaDyI~ld~~----------~~e~lk~~v~~~~~~ipi~AsGGI~-~~ 234 (265)
T TIGR00078 166 KAVKRARAAAPFALKIEVEVESLEEAEEAAEAGADIIMLDNM----------KPEEIKEAVQLLKGRVLLEASGGIT-LD 234 (265)
T ss_pred HHHHHHHHhCCCCCeEEEEeCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhcCCCcEEEECCCC-HH
Confidence 34788888764 223333567899999999999999999652 2366777776664469999999995 99
Q ss_pred HHHHHHHcCcCEEEEchHHH
Q 015722 328 DVFKALALGASGVFVGRPVP 347 (402)
Q Consensus 328 dv~kal~lGAd~V~iGr~~l 347 (402)
.+.+..++|+|++.+|.+..
T Consensus 235 ni~~~a~~Gvd~Isvgait~ 254 (265)
T TIGR00078 235 NLEEYAETGVDVISSGALTH 254 (265)
T ss_pred HHHHHHHcCCCEEEeCHHHc
Confidence 99999999999999976543
No 188
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=97.71 E-value=0.00027 Score=67.82 Aligned_cols=95 Identities=27% Similarity=0.256 Sum_probs=65.7
Q ss_pred cHHHHHHHHHccCccEEEEec-----cCHHH-----HHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHh-----
Q 015722 247 NWKDVKWLQTITSLPILVKGV-----LTAED-----ASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAA----- 311 (402)
Q Consensus 247 ~~~~i~~lr~~~~~Pv~vK~~-----~~~~d-----a~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~----- 311 (402)
..++|+++++..+-++.+|.+ ++.++ .+.+.++|||+|..|..-+ .+.++.+.+.-+++.+
T Consensus 117 v~~ei~~v~~~~~~~~~lKVIlEt~~L~~ee~i~~a~~~a~~aGADFVKTSTGf~----~~gAt~edv~lm~~~i~~~~~ 192 (257)
T PRK05283 117 GFELVKACKEACAANVLLKVIIETGELKDEALIRKASEIAIKAGADFIKTSTGKV----PVNATLEAARIMLEVIRDMGV 192 (257)
T ss_pred HHHHHHHHHHHhCCCceEEEEEeccccCCHHHHHHHHHHHHHhCCCEEEcCCCCC----CCCCCHHHHHHHHHHHHhccc
Confidence 446788888876534677876 34342 3567899999999975311 2235555555555544
Q ss_pred cCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHH
Q 015722 312 KGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVP 347 (402)
Q Consensus 312 ~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l 347 (402)
++++.|-++|||||.+++.+++.+|.+.. |.-|+
T Consensus 193 ~~~vgIKAsGGIrt~~~A~~~i~ag~~~l--g~~~~ 226 (257)
T PRK05283 193 AKTVGFKPAGGVRTAEDAAQYLALADEIL--GADWA 226 (257)
T ss_pred CCCeeEEccCCCCCHHHHHHHHHHHHHHh--Chhhc
Confidence 35799999999999999999999997653 44444
No 189
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=97.71 E-value=0.0077 Score=56.48 Aligned_cols=173 Identities=20% Similarity=0.147 Sum_probs=113.0
Q ss_pred hhHHHHHHHHHcCCeEEecCCcc------CCH----HHHhhcCCCceEEEEeecCChhHHHHHHHHHHHcCCcEEEEecC
Q 015722 123 GECATARAASAAGTIMTLSSWAT------SSV----EEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVD 192 (402)
Q Consensus 123 ge~ala~aa~~~G~~~~vs~~~~------~s~----eei~~~~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd 192 (402)
.++.-.+.+.+.|..-.++|..+ .+. +++.+..+++..+|++ ..|.+.+.+..++..+.. ..++|-+
T Consensus 8 Ad~~~i~~~~~~~~i~GvTTNPsll~k~g~~~~~~~~~i~~~~~g~vs~qv~-~~~~~~mi~~a~~l~~~~-~~i~iKI- 84 (213)
T TIGR00875 8 ANVEEIKKAAELGILAGVTTNPSLIAKEGRSFWEVLKEIQEAVEGPVSAETI-SLDAEGMVEEAKELAKLA-PNIVVKI- 84 (213)
T ss_pred CCHHHHHHHHhcCCcceEeCCHHHHHhcCCCHHHHHHHHHHhcCCcEEEEEe-eCCHHHHHHHHHHHHHhC-CCeEEEe-
Confidence 46667777888887666665422 222 3344445577888986 455555444444444443 2232211
Q ss_pred CCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCCccHHHHHHHHHccCccEEEEeccCHHH
Q 015722 193 TPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAED 272 (402)
Q Consensus 193 ~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~Pv~vK~~~~~~d 272 (402)
|. +. -..+.++.+++. ++++-+=.+.+.+.
T Consensus 85 -----------------P~--T~------------------------------~Gl~A~~~L~~~-Gi~v~~T~vfs~~Q 114 (213)
T TIGR00875 85 -----------------PM--TS------------------------------EGLKAVKILKKE-GIKTNVTLVFSAAQ 114 (213)
T ss_pred -----------------CC--CH------------------------------HHHHHHHHHHHC-CCceeEEEecCHHH
Confidence 10 00 012445556553 78888888899999
Q ss_pred HHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHh---cCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHHHh
Q 015722 273 ASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAA---KGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFS 349 (402)
Q Consensus 273 a~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~---~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~~ 349 (402)
|..|.++|++.|.. .-||-.+.|...++.+.++.+.+ +.+..|++.+ +|+..++.+++.+|||.|-+.-.++..
T Consensus 115 a~~Aa~aGa~yisp--yvgRi~d~g~dg~~~v~~~~~~~~~~~~~tkIlaAS-~r~~~~v~~~~~~G~d~vTip~~vl~~ 191 (213)
T TIGR00875 115 ALLAAKAGATYVSP--FVGRLDDIGGDGMKLIEEVKTIFENHAPDTEVIAAS-VRHPRHVLEAALIGADIATMPLDVMQQ 191 (213)
T ss_pred HHHHHHcCCCEEEe--ecchHHHcCCCHHHHHHHHHHHHHHcCCCCEEEEec-cCCHHHHHHHHHcCCCEEEcCHHHHHH
Confidence 99999999998776 44554455556666666666654 3367777755 999999999999999999999988877
Q ss_pred hh
Q 015722 350 LA 351 (402)
Q Consensus 350 ~~ 351 (402)
+.
T Consensus 192 l~ 193 (213)
T TIGR00875 192 LF 193 (213)
T ss_pred HH
Confidence 64
No 190
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.70 E-value=0.0004 Score=67.97 Aligned_cols=89 Identities=18% Similarity=0.242 Sum_probs=68.0
Q ss_pred HHHHHHHHccCccE-EEEeccCHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHh---cCCCeEEEecCCC
Q 015722 249 KDVKWLQTITSLPI-LVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAA---KGRVPVFLDGGVR 324 (402)
Q Consensus 249 ~~i~~lr~~~~~Pv-~vK~~~~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~---~~~i~via~GGI~ 324 (402)
+.++.+|+..+... +--.+.+.+++..|.++|+|.|.+.|-+ + +.+.++.+.+ ..++++.++|||
T Consensus 184 ~av~~~r~~~~~~~~I~VEv~tleea~eA~~~GaD~I~LDn~~-------~---e~l~~av~~~~~~~~~i~leAsGGI- 252 (288)
T PRK07428 184 EAITRIRQRIPYPLTIEVETETLEQVQEALEYGADIIMLDNMP-------V---DLMQQAVQLIRQQNPRVKIEASGNI- 252 (288)
T ss_pred HHHHHHHHhCCCCCEEEEECCCHHHHHHHHHcCCCEEEECCCC-------H---HHHHHHHHHHHhcCCCeEEEEECCC-
Confidence 56888888765222 2224578999999999999999997632 3 4444444433 357999999999
Q ss_pred CHHHHHHHHHcCcCEEEEchHHHH
Q 015722 325 RGTDVFKALALGASGVFVGRPVPF 348 (402)
Q Consensus 325 ~g~dv~kal~lGAd~V~iGr~~l~ 348 (402)
+.+.+.++.++|+|.+.+|++...
T Consensus 253 t~~ni~~ya~tGvD~Isvgsl~~s 276 (288)
T PRK07428 253 TLETIRAVAETGVDYISSSAPITR 276 (288)
T ss_pred CHHHHHHHHHcCCCEEEEchhhhC
Confidence 599999999999999999998763
No 191
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=97.68 E-value=0.00066 Score=68.13 Aligned_cols=94 Identities=23% Similarity=0.218 Sum_probs=69.3
Q ss_pred HHHHHcc-CccEEEEeccCHHHHHHHHHhCCcEEEEecCcccCCC--CCcchHHHHHHHHHHhcCCCeEEEecCCCCHHH
Q 015722 252 KWLQTIT-SLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLD--YVPATVMALEEVVQAAKGRVPVFLDGGVRRGTD 328 (402)
Q Consensus 252 ~~lr~~~-~~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~~~d--~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~d 328 (402)
...|+.. +..++--.+.+.++++.|.+.|+|+|.++-...+.-. ..+..++.+..+.+.. ++||++-|||. .++
T Consensus 231 ~~aR~llg~~~iIG~S~Hs~~e~~~A~~~GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~~--~iPv~AiGGI~-~~n 307 (347)
T PRK02615 231 AVARQLLGPEKIIGRSTTNPEEMAKAIAEGADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKEA--PIPWFAIGGID-KSN 307 (347)
T ss_pred HHHHHhcCCCCEEEEecCCHHHHHHHHHcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEECCCC-HHH
Confidence 4445544 2334333346799999999999999999754433211 1244577788877765 79999999996 899
Q ss_pred HHHHHHcCcCEEEEchHHHH
Q 015722 329 VFKALALGASGVFVGRPVPF 348 (402)
Q Consensus 329 v~kal~lGAd~V~iGr~~l~ 348 (402)
+.+.+.+||++|.+++.++.
T Consensus 308 i~~l~~~Ga~gVAvisaI~~ 327 (347)
T PRK02615 308 IPEVLQAGAKRVAVVRAIMG 327 (347)
T ss_pred HHHHHHcCCcEEEEeHHHhC
Confidence 99999999999999998874
No 192
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=97.66 E-value=0.00039 Score=66.38 Aligned_cols=75 Identities=28% Similarity=0.194 Sum_probs=61.4
Q ss_pred HHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHHH
Q 015722 270 AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 348 (402)
Q Consensus 270 ~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~ 348 (402)
.+.|+...+.|+|.|.+..--+. .+.....+.+.++.+.+ .+||.+.|||+|.+|+.+++.+||+-|.+|+..+.
T Consensus 35 ~~~a~~~~~~g~~~l~ivDLd~~--~g~~~n~~~i~~i~~~~--~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~~l~ 109 (241)
T PRK14024 35 LDAALAWQRDGAEWIHLVDLDAA--FGRGSNRELLAEVVGKL--DVKVELSGGIRDDESLEAALATGCARVNIGTAALE 109 (241)
T ss_pred HHHHHHHHHCCCCEEEEEecccc--CCCCccHHHHHHHHHHc--CCCEEEcCCCCCHHHHHHHHHCCCCEEEECchHhC
Confidence 35677888899999988642221 13446678999999887 79999999999999999999999999999998764
No 193
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=97.66 E-value=0.00058 Score=63.30 Aligned_cols=93 Identities=25% Similarity=0.288 Sum_probs=63.1
Q ss_pred HHHHHHHcc-CccEEEEe--ccC----HHHHHHHHHhCCcEEEEecCcccCC-----------CCCcchHHHHHHHHHHh
Q 015722 250 DVKWLQTIT-SLPILVKG--VLT----AEDASLAIQYGAAGIIVSNHGARQL-----------DYVPATVMALEEVVQAA 311 (402)
Q Consensus 250 ~i~~lr~~~-~~Pv~vK~--~~~----~~da~~a~~aGad~I~vsn~gg~~~-----------d~~~~~~~~l~~i~~~~ 311 (402)
..++.|+.. +.|+.|-. ++. .+-|+.+.++|+|.|.. .||+.. ....|++....+|.+++
T Consensus 108 Lt~~tR~LLP~~~LsVTVPHiL~ld~Qv~LA~~L~~~GaDiIQT--EGgtss~p~~~g~lglIekaapTLAaay~ISr~v 185 (242)
T PF04481_consen 108 LTRETRSLLPDITLSVTVPHILPLDQQVQLAEDLVKAGADIIQT--EGGTSSKPTSPGILGLIEKAAPTLAAAYAISRAV 185 (242)
T ss_pred HHHHHHHhCCCCceEEecCccccHHHHHHHHHHHHHhCCcEEEc--CCCCCCCCCCcchHHHHHHHhHHHHHHHHHHhcc
Confidence 345555554 34554432 222 24478899999999876 566531 12235666677777776
Q ss_pred cCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHH
Q 015722 312 KGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVP 347 (402)
Q Consensus 312 ~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l 347 (402)
++||+...|+.. --+--|+++||.+|+||+..=
T Consensus 186 --~iPVlcASGlS~-vT~PmAiaaGAsGVGVGSavn 218 (242)
T PF04481_consen 186 --SIPVLCASGLSA-VTAPMAIAAGASGVGVGSAVN 218 (242)
T ss_pred --CCceEeccCcch-hhHHHHHHcCCcccchhHHhh
Confidence 899999999984 446668999999999999753
No 194
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=97.65 E-value=0.001 Score=62.21 Aligned_cols=100 Identities=33% Similarity=0.407 Sum_probs=71.5
Q ss_pred cHHHHHHHHHccCccEEEEec-cCHHHHHHHHHhCCcEEEEec---------C------------cccCC----------
Q 015722 247 NWKDVKWLQTITSLPILVKGV-LTAEDASLAIQYGAAGIIVSN---------H------------GARQL---------- 294 (402)
Q Consensus 247 ~~~~i~~lr~~~~~Pv~vK~~-~~~~da~~a~~aGad~I~vsn---------~------------gg~~~---------- 294 (402)
+.+.|+++.+.+.+||..|.. .+.-+|+.+...|+|.|.=|- | |.|.+
T Consensus 65 Dp~~i~eim~aVsIPVMAKvRIGH~~EA~iLealgVD~IDESEVLTPAD~~~Hi~K~~FtVPFVcGarnLgEAlRRI~EG 144 (296)
T COG0214 65 DPKMIEEIMDAVSIPVMAKVRIGHFVEAQILEALGVDMIDESEVLTPADEEFHINKWKFTVPFVCGARNLGEALRRISEG 144 (296)
T ss_pred CHHHHHHHHHhcccceeeeeecchhHHHHHHHHhCCCccccccccCCCchhhhcchhhcccceecCcCcHHHHHHHHhhh
Confidence 347789999999999999975 577889999999999997651 1 22210
Q ss_pred ------CC--C------------------------------------cchHHHHHHHHHHhcCCCeE--EEecCCCCHHH
Q 015722 295 ------DY--V------------------------------------PATVMALEEVVQAAKGRVPV--FLDGGVRRGTD 328 (402)
Q Consensus 295 ------d~--~------------------------------------~~~~~~l~~i~~~~~~~i~v--ia~GGI~~g~d 328 (402)
.+ | ..+.+.+.++++. +++|| ++.|||.|+.|
T Consensus 145 AaMIRTKGEaGTGnv~eAVrHmr~i~~eI~~l~~~~edel~~~Ak~~~~p~elv~~~~~~--grLPVvnFAAGGvATPAD 222 (296)
T COG0214 145 AAMIRTKGEAGTGNVVEAVRHMRKINGEIRRLQSMTEDELYVVAKELQAPYELVKEVAKL--GRLPVVNFAAGGVATPAD 222 (296)
T ss_pred HHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHhCChHHHHHHHHHh--CCCCeEeecccCcCChhH
Confidence 00 0 0122333333332 36665 79999999999
Q ss_pred HHHHHHcCcCEEEEchHHHH
Q 015722 329 VFKALALGASGVFVGRPVPF 348 (402)
Q Consensus 329 v~kal~lGAd~V~iGr~~l~ 348 (402)
+.-.+.||||+|.+|+-++.
T Consensus 223 AALMM~LGadGVFVGSGIFK 242 (296)
T COG0214 223 AALMMQLGADGVFVGSGIFK 242 (296)
T ss_pred HHHHHHhCCCeEEecccccC
Confidence 99999999999999996543
No 195
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=97.64 E-value=0.00032 Score=69.13 Aligned_cols=78 Identities=23% Similarity=0.311 Sum_probs=61.5
Q ss_pred eccCHHHHHHHHHhCCcEEEEec--CcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEc
Q 015722 266 GVLTAEDASLAIQYGAAGIIVSN--HGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVG 343 (402)
Q Consensus 266 ~~~~~~da~~a~~aGad~I~vsn--~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iG 343 (402)
...++..++++.++|+-+|.--. -|. ..|....+.|..+.+.. ++||+.++||.+++|+.+|+.+|||+|.+.
T Consensus 204 c~~d~~~a~~l~~~g~~avmPl~~pIGs---g~gv~~p~~i~~~~e~~--~vpVivdAGIg~~sda~~AmelGadgVL~n 278 (326)
T PRK11840 204 CSDDPIAAKRLEDAGAVAVMPLGAPIGS---GLGIQNPYTIRLIVEGA--TVPVLVDAGVGTASDAAVAMELGCDGVLMN 278 (326)
T ss_pred eCCCHHHHHHHHhcCCEEEeeccccccC---CCCCCCHHHHHHHHHcC--CCcEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence 34689999999999995554311 121 12456778888888764 799999999999999999999999999999
Q ss_pred hHHHH
Q 015722 344 RPVPF 348 (402)
Q Consensus 344 r~~l~ 348 (402)
+.+..
T Consensus 279 SaIa~ 283 (326)
T PRK11840 279 TAIAE 283 (326)
T ss_pred ceecc
Confidence 97753
No 196
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=97.63 E-value=0.00051 Score=66.68 Aligned_cols=88 Identities=24% Similarity=0.227 Sum_probs=69.7
Q ss_pred HHHHHHHHccC-ccEEEEeccCHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHH
Q 015722 249 KDVKWLQTITS-LPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGT 327 (402)
Q Consensus 249 ~~i~~lr~~~~-~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~ 327 (402)
..++.+|+..+ ...+.--+.+.++++.+.++|+|+|.+.|- ..+.+.++++.++.++|+.++|||. .+
T Consensus 170 ~~v~~~r~~~~~~~~Igvev~s~eea~~A~~~gaDyI~ld~~----------~~e~l~~~~~~~~~~ipi~AiGGI~-~~ 238 (268)
T cd01572 170 EAVRRARAAAPFTLKIEVEVETLEQLKEALEAGADIIMLDNM----------SPEELREAVALLKGRVLLEASGGIT-LE 238 (268)
T ss_pred HHHHHHHHhCCCCCeEEEEECCHHHHHHHHHcCCCEEEECCc----------CHHHHHHHHHHcCCCCcEEEECCCC-HH
Confidence 34788888764 223333457899999999999999999653 2577777777664469999999995 99
Q ss_pred HHHHHHHcCcCEEEEchHHH
Q 015722 328 DVFKALALGASGVFVGRPVP 347 (402)
Q Consensus 328 dv~kal~lGAd~V~iGr~~l 347 (402)
.+.++.++|+|++.+|++..
T Consensus 239 ni~~~a~~Gvd~Iav~sl~~ 258 (268)
T cd01572 239 NIRAYAETGVDYISVGALTH 258 (268)
T ss_pred HHHHHHHcCCCEEEEEeeec
Confidence 99999999999999999765
No 197
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=97.61 E-value=0.0012 Score=61.72 Aligned_cols=96 Identities=21% Similarity=0.204 Sum_probs=72.9
Q ss_pred HHHHHHccCccEEEEec-cCHHHHHHHHHhCCcEEEEecCcccCC--CCCcchHHHHHHHHHHhcCCCeEEEecCCCCHH
Q 015722 251 VKWLQTITSLPILVKGV-LTAEDASLAIQYGAAGIIVSNHGARQL--DYVPATVMALEEVVQAAKGRVPVFLDGGVRRGT 327 (402)
Q Consensus 251 i~~lr~~~~~Pv~vK~~-~~~~da~~a~~aGad~I~vsn~gg~~~--d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~ 327 (402)
+...++..+-..++..+ .+.++++.|.+.|+|+|.++.-..+.- +..+.-++.+..+++.. ++|+++-|||. .+
T Consensus 94 ~~~ar~~~~~~~iIG~S~h~~eea~~A~~~g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~--~iP~vAIGGi~-~~ 170 (211)
T COG0352 94 LAEARELLGPGLIIGLSTHDLEEALEAEELGADYVGLGPIFPTSTKPDAPPLGLEGLREIRELV--NIPVVAIGGIN-LE 170 (211)
T ss_pred hHHHHHhcCCCCEEEeecCCHHHHHHHHhcCCCEEEECCcCCCCCCCCCCccCHHHHHHHHHhC--CCCEEEEcCCC-HH
Confidence 44555555444455543 578999999999999999865444432 22334578888887766 69999999998 89
Q ss_pred HHHHHHHcCcCEEEEchHHHHh
Q 015722 328 DVFKALALGASGVFVGRPVPFS 349 (402)
Q Consensus 328 dv~kal~lGAd~V~iGr~~l~~ 349 (402)
.+...+..||++|.+-|.++.+
T Consensus 171 nv~~v~~~Ga~gVAvvsai~~a 192 (211)
T COG0352 171 NVPEVLEAGADGVAVVSAITSA 192 (211)
T ss_pred HHHHHHHhCCCeEEehhHhhcC
Confidence 9999999999999999988753
No 198
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=97.60 E-value=0.00041 Score=66.78 Aligned_cols=97 Identities=22% Similarity=0.260 Sum_probs=72.3
Q ss_pred HHHHHHHHHccCccEEEEeccCHHHHHHHHHhCCcEEEEec-------------------Cc--------------c--c
Q 015722 248 WKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSN-------------------HG--------------A--R 292 (402)
Q Consensus 248 ~~~i~~lr~~~~~Pv~vK~~~~~~da~~a~~aGad~I~vsn-------------------~g--------------g--~ 292 (402)
.+.++.+++ +++||-+.|....++++.+.++||+.|++.. +| | +
T Consensus 73 ~~~i~~i~~-~~~~vqvGGGIR~e~i~~~l~~Ga~rViigT~Av~~~~~~p~~v~~~~~~~G~~~IvvsiD~k~~~g~~~ 151 (262)
T PLN02446 73 AAALEALRA-YPGGLQVGGGVNSENAMSYLDAGASHVIVTSYVFRDGQIDLERLKDLVRLVGKQRLVLDLSCRKKDGRYY 151 (262)
T ss_pred HHHHHHHHh-CCCCEEEeCCccHHHHHHHHHcCCCEEEEchHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEecCCCEE
Confidence 567888888 7889988875445888999999999888852 11 1 0
Q ss_pred ----------C------------------------CCC--CcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHc-
Q 015722 293 ----------Q------------------------LDY--VPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALAL- 335 (402)
Q Consensus 293 ----------~------------------------~d~--~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~l- 335 (402)
. -|+ .-+.++.+.++.+.+ ++|||++|||++-+|+.+...+
T Consensus 152 Va~~GW~~~t~~~~~e~~~~~~~~g~~eii~TdI~rDGtl~G~d~el~~~l~~~~--~ipVIASGGv~sleDi~~L~~~g 229 (262)
T PLN02446 152 VVTDRWQKFSDLAVDEETLEFLAAYCDEFLVHGVDVEGKRLGIDEELVALLGEHS--PIPVTYAGGVRSLDDLERVKVAG 229 (262)
T ss_pred EEECCCcccCCCCHHHHHHHHHHhCCCEEEEEEEcCCCcccCCCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHcC
Confidence 0 011 123556667776665 7999999999999999999988
Q ss_pred -CcCEEEEchHHH
Q 015722 336 -GASGVFVGRPVP 347 (402)
Q Consensus 336 -GAd~V~iGr~~l 347 (402)
|..+|.+|+++.
T Consensus 230 ~g~~gvIvGkAl~ 242 (262)
T PLN02446 230 GGRVDVTVGSALD 242 (262)
T ss_pred CCCEEEEEEeeHH
Confidence 578999999983
No 199
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=97.59 E-value=0.007 Score=56.01 Aligned_cols=95 Identities=23% Similarity=0.214 Sum_probs=64.4
Q ss_pred HHHHHHHHccCccEEEEe-ccCHHHH--HHHHHhCCcEEEEecCcccCC--CCCcchHHHHHHHHHHhcCCCeEEEecCC
Q 015722 249 KDVKWLQTITSLPILVKG-VLTAEDA--SLAIQYGAAGIIVSNHGARQL--DYVPATVMALEEVVQAAKGRVPVFLDGGV 323 (402)
Q Consensus 249 ~~i~~lr~~~~~Pv~vK~-~~~~~da--~~a~~aGad~I~vsn~gg~~~--d~~~~~~~~l~~i~~~~~~~i~via~GGI 323 (402)
+.++.+++..+.+++... +.+..+. ..+...|+|++.+.+...... .+.+..++.+.++. .++|+++.|||
T Consensus 86 ~~~~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~aD~il~dt~~~~~~Gg~g~~~~~~~l~~~~----~~~PvilaGGI 161 (203)
T cd00405 86 EYCAQLRARLGLPVIKAIRVKDEEDLEKAAAYAGEVDAILLDSKSGGGGGGTGKTFDWSLLRGLA----SRKPVILAGGL 161 (203)
T ss_pred HHHHHHHhhcCCcEEEEEecCChhhHHHhhhccccCCEEEEcCCCCCCCCCCcceEChHHhhccc----cCCCEEEECCC
Confidence 456777776666665222 2333333 355668999998865311100 12345677777765 37899999999
Q ss_pred CCHHHHHHHHHcC-cCEEEEchHHHH
Q 015722 324 RRGTDVFKALALG-ASGVFVGRPVPF 348 (402)
Q Consensus 324 ~~g~dv~kal~lG-Ad~V~iGr~~l~ 348 (402)
+++.+.+++..| +++|-+.+.+..
T Consensus 162 -~~~Nv~~~i~~~~~~gvdv~S~ie~ 186 (203)
T cd00405 162 -TPDNVAEAIRLVRPYGVDVSSGVET 186 (203)
T ss_pred -ChHHHHHHHHhcCCCEEEcCCcccC
Confidence 799999999999 999999997653
No 200
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=97.59 E-value=0.026 Score=55.53 Aligned_cols=79 Identities=24% Similarity=0.383 Sum_probs=63.7
Q ss_pred cCHHHHHHHHHhCCcEEEEe--c-CcccCCCCCcchHHHHHHHHHHhcCCCeEEEecC--CCCHHHHHHHHHcCcCEEEE
Q 015722 268 LTAEDASLAIQYGAAGIIVS--N-HGARQLDYVPATVMALEEVVQAAKGRVPVFLDGG--VRRGTDVFKALALGASGVFV 342 (402)
Q Consensus 268 ~~~~da~~a~~aGad~I~vs--n-~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GG--I~~g~dv~kal~lGAd~V~i 342 (402)
.++++|+.+.+.|+|.+-++ + ||-+.-....-.++.|.+|++.+. ++|+++=|| |. .+++.+++..|++.|-+
T Consensus 154 t~peea~~f~~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~~-~iPlVlhGGSGi~-~e~~~~~i~~Gi~KiNv 231 (293)
T PRK07315 154 APIEDAKAMVETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAVP-GFPIVLHGGSGIP-DDQIQEAIKLGVAKVNV 231 (293)
T ss_pred CCHHHHHHHHHcCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhcc-CCCEEEECCCCCC-HHHHHHHHHcCCCEEEE
Confidence 57899999999999999998 3 554421112346789999998872 499999998 87 78999999999999999
Q ss_pred chHHHH
Q 015722 343 GRPVPF 348 (402)
Q Consensus 343 Gr~~l~ 348 (402)
+|.+..
T Consensus 232 ~T~i~~ 237 (293)
T PRK07315 232 NTECQI 237 (293)
T ss_pred ccHHHH
Confidence 998764
No 201
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=97.57 E-value=0.00085 Score=65.17 Aligned_cols=88 Identities=25% Similarity=0.249 Sum_probs=67.2
Q ss_pred HHHHHHHHccC-ccEEEEeccCHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcC--CCeEEEecCCCC
Q 015722 249 KDVKWLQTITS-LPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKG--RVPVFLDGGVRR 325 (402)
Q Consensus 249 ~~i~~lr~~~~-~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~--~i~via~GGI~~ 325 (402)
..++.+|+..+ ...+.-.+.+.+++..+.++|+|.|.+.|- ..+.+.++.+.++. ++||.++|||.
T Consensus 169 ~~v~~~r~~~~~~~~I~vev~t~eea~~A~~~gaD~I~ld~~----------~~e~l~~~v~~i~~~~~i~i~asGGIt- 237 (269)
T cd01568 169 EAVKRARAAAPFEKKIEVEVETLEEAEEALEAGADIIMLDNM----------SPEELKEAVKLLKGLPRVLLEASGGIT- 237 (269)
T ss_pred HHHHHHHHhCCCCCeEEEecCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhccCCCeEEEEECCCC-
Confidence 34788888875 233334567899999999999999999663 22455555554433 78999999997
Q ss_pred HHHHHHHHHcCcCEEEEchHHH
Q 015722 326 GTDVFKALALGASGVFVGRPVP 347 (402)
Q Consensus 326 g~dv~kal~lGAd~V~iGr~~l 347 (402)
.+.+.++.++|||++.+|..+.
T Consensus 238 ~~ni~~~a~~Gad~Isvgal~~ 259 (269)
T cd01568 238 LENIRAYAETGVDVISTGALTH 259 (269)
T ss_pred HHHHHHHHHcCCCEEEEcHHHc
Confidence 8999999999999999987553
No 202
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=97.56 E-value=0.0015 Score=60.81 Aligned_cols=199 Identities=17% Similarity=0.196 Sum_probs=112.9
Q ss_pred eEEEEeecCChhHHHHHHHHHHHcCCcEEEEecCCCCC---Cchh-HHHhhhcCCCCccccccccccccccCC-CCCchh
Q 015722 159 RFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRL---GRRE-ADIKNRFVLPPHLTLKNYEGLYIGKMD-KTDDSG 233 (402)
Q Consensus 159 ~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~---g~r~-~d~r~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~ 233 (402)
..+|+-. |.-.++++++-+++.+-...+|-+++|.. |.+- +.+|..| |.++....++-.+..... +.....
T Consensus 4 p~LQvAL--D~~~l~~Ai~~a~~v~~~~diiEvGTpLik~eG~~aV~~lr~~~--pd~~IvAD~Kt~D~G~~e~~ma~~a 79 (217)
T COG0269 4 PLLQVAL--DLLDLEEAIEIAEEVADYVDIIEVGTPLIKAEGMRAVRALRELF--PDKIIVADLKTADAGAIEARMAFEA 79 (217)
T ss_pred cceEeee--cccCHHHHHHHHHHhhhcceEEEeCcHHHHHhhHHHHHHHHHHC--CCCeEEeeeeecchhHHHHHHHHHc
Confidence 4678753 55566677777776655577788899862 3222 4455444 544433322111100000 000000
Q ss_pred hHHHhhh-hcCCCccHHHHHHHHHccCccEEEEec--cCHHHH-HHHHHhCCcEEEEecCccc--CCCCCcchHHHHHHH
Q 015722 234 LASYVAN-QIDRSLNWKDVKWLQTITSLPILVKGV--LTAEDA-SLAIQYGAAGIIVSNHGAR--QLDYVPATVMALEEV 307 (402)
Q Consensus 234 ~~~~~~~-~~d~~~~~~~i~~lr~~~~~Pv~vK~~--~~~~da-~~a~~aGad~I~vsn~gg~--~~d~~~~~~~~l~~i 307 (402)
.+.++.- ...+..|.+..-...+..++-+.+=++ .++++. +.+.++|+|.+.+ |-|+ |..+-.+.++.|..+
T Consensus 80 GAd~~tV~g~A~~~TI~~~i~~A~~~~~~v~iDl~~~~~~~~~~~~l~~~gvd~~~~--H~g~D~q~~G~~~~~~~l~~i 157 (217)
T COG0269 80 GADWVTVLGAADDATIKKAIKVAKEYGKEVQIDLIGVWDPEQRAKWLKELGVDQVIL--HRGRDAQAAGKSWGEDDLEKI 157 (217)
T ss_pred CCCEEEEEecCCHHHHHHHHHHHHHcCCeEEEEeecCCCHHHHHHHHHHhCCCEEEE--EecccHhhcCCCccHHHHHHH
Confidence 0001000 011222333322223334555655544 466665 4455599999999 7555 222333347888888
Q ss_pred HHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHHHhhhcCChHHHHHHHHHHHHHHH
Q 015722 308 VQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFE 370 (402)
Q Consensus 308 ~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~~~~~~G~~gv~~~i~~l~~el~ 370 (402)
++.......|-+.|||. ++++......|++.|.+||.+-- ...+.+..+.+++++.
T Consensus 158 k~~~~~g~~vAVaGGI~-~~~i~~~~~~~~~ivIvGraIt~------a~dp~~~a~~~~~~i~ 213 (217)
T COG0269 158 KKLSDLGAKVAVAGGIT-PEDIPLFKGIGADIVIVGRAITG------AKDPAEAARKFKEEID 213 (217)
T ss_pred HHhhccCceEEEecCCC-HHHHHHHhcCCCCEEEECchhcC------CCCHHHHHHHHHHHHh
Confidence 87764458999999998 99999999999999999998653 3444556677777664
No 203
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.55 E-value=0.0006 Score=64.77 Aligned_cols=98 Identities=18% Similarity=0.114 Sum_probs=68.4
Q ss_pred HHHHHHHHHccCccEEEEe-ccCHHHHHHHHHhCCcEEEEecC---------------cccC----CC------------
Q 015722 248 WKDVKWLQTITSLPILVKG-VLTAEDASLAIQYGAAGIIVSNH---------------GARQ----LD------------ 295 (402)
Q Consensus 248 ~~~i~~lr~~~~~Pv~vK~-~~~~~da~~a~~aGad~I~vsn~---------------gg~~----~d------------ 295 (402)
.+.++++.+....|+.+.+ +.+.++++.+.+.|++.|++... |+.. +|
T Consensus 62 ~~~i~~i~~~~~~~v~vGGGIrs~e~~~~~l~~Ga~kvvigt~a~~~p~~~~~~~~~~g~~~ivvslD~~~~~~v~~~gw 141 (232)
T PRK13586 62 EMYIKEISKIGFDWIQVGGGIRDIEKAKRLLSLDVNALVFSTIVFTNFNLFHDIVREIGSNRVLVSIDYDNTKRVLIRGW 141 (232)
T ss_pred HHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHCCCCEEEECchhhCCHHHHHHHHHHhCCCCEEEEEEcCCCCEEEccCC
Confidence 3667777774334888864 57889999999999998887421 1100 01
Q ss_pred ------------------------------C--CcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEc
Q 015722 296 ------------------------------Y--VPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVG 343 (402)
Q Consensus 296 ------------------------------~--~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iG 343 (402)
+ .-+.++.+..+.+. ..|++++|||++-+|+.++..+|+++|.+|
T Consensus 142 ~~~~~~~~e~~~~l~~~g~~~ii~tdI~~dGt~~G~d~el~~~~~~~---~~~viasGGv~s~~Dl~~l~~~G~~gvivg 218 (232)
T PRK13586 142 KEKSMEVIDGIKKVNELELLGIIFTYISNEGTTKGIDYNVKDYARLI---RGLKEYAGGVSSDADLEYLKNVGFDYIIVG 218 (232)
T ss_pred eeCCCCHHHHHHHHHhcCCCEEEEecccccccCcCcCHHHHHHHHhC---CCCEEEECCCCCHHHHHHHHHCCCCEEEEe
Confidence 1 01233444444332 346999999999999999999999999999
Q ss_pred hHHHH
Q 015722 344 RPVPF 348 (402)
Q Consensus 344 r~~l~ 348 (402)
++++.
T Consensus 219 ~Aly~ 223 (232)
T PRK13586 219 MAFYL 223 (232)
T ss_pred hhhhc
Confidence 99874
No 204
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=97.53 E-value=0.011 Score=55.77 Aligned_cols=153 Identities=19% Similarity=0.240 Sum_probs=96.0
Q ss_pred cCChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCC
Q 015722 166 TKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRS 245 (402)
Q Consensus 166 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 245 (402)
..|.....+.+++++++|++.+ ++|.- .|.=+| +-.
T Consensus 12 ~ad~~~l~~~i~~l~~~g~d~l--HiDim----------DG~FVP--------------------------------N~t 47 (223)
T PRK08745 12 SADFARLGEEVDNVLKAGADWV--HFDVM----------DNHYVP--------------------------------NLT 47 (223)
T ss_pred hcCHHHHHHHHHHHHHcCCCEE--EEecc----------cCccCC--------------------------------Ccc
Confidence 4577788899999999999886 44421 110011 122
Q ss_pred ccHHHHHHHHHc-cCccEEEEe-ccCHHH-HHHHHHhCCcEEEEecC---------------cc---------cC-----
Q 015722 246 LNWKDVKWLQTI-TSLPILVKG-VLTAED-ASLAIQYGAAGIIVSNH---------------GA---------RQ----- 293 (402)
Q Consensus 246 ~~~~~i~~lr~~-~~~Pv~vK~-~~~~~d-a~~a~~aGad~I~vsn~---------------gg---------~~----- 293 (402)
+..+.++++|+. ++.|+=+-. +.+++. ++...++|+|.|++.-- |- +.
T Consensus 48 fg~~~i~~lr~~~~~~~~dvHLMv~~P~~~i~~~~~~gad~I~~H~Ea~~~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~ 127 (223)
T PRK08745 48 IGPMVCQALRKHGITAPIDVHLMVEPVDRIVPDFADAGATTISFHPEASRHVHRTIQLIKSHGCQAGLVLNPATPVDILD 127 (223)
T ss_pred cCHHHHHHHHhhCCCCCEEEEeccCCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCceeEEeCCCCCHHHHH
Confidence 455778899887 577876654 345554 66778889998888411 10 00
Q ss_pred -----CC-----------CC----cchHHHHHHHHHHhc---CCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHHHhh
Q 015722 294 -----LD-----------YV----PATVMALEEVVQAAK---GRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSL 350 (402)
Q Consensus 294 -----~d-----------~~----~~~~~~l~~i~~~~~---~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~~~ 350 (402)
.| +| +..++-+.++++... .++.|-+||||. .+.+.++.++|||.+.+||.+ |+
T Consensus 128 ~~l~~vD~VlvMtV~PGf~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~-~eti~~l~~aGaDi~V~GSai-F~- 204 (223)
T PRK08745 128 WVLPELDLVLVMSVNPGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDGGVK-ADNIGAIAAAGADTFVAGSAI-FN- 204 (223)
T ss_pred HHHhhcCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcCCCEEEEChhh-hC-
Confidence 01 12 223444555544432 247799999998 778888899999999999984 43
Q ss_pred hcCChHHHHHHHHHHHHHH
Q 015722 351 AVDGEAGVRKVLQMLRDEF 369 (402)
Q Consensus 351 ~~~G~~gv~~~i~~l~~el 369 (402)
.+...+.++.+++.+
T Consensus 205 ----~~d~~~~~~~lr~~~ 219 (223)
T PRK08745 205 ----APDYAQVIAQMRAAV 219 (223)
T ss_pred ----CCCHHHHHHHHHHHH
Confidence 122445566665543
No 205
>PRK06801 hypothetical protein; Provisional
Probab=97.51 E-value=0.043 Score=53.81 Aligned_cols=107 Identities=17% Similarity=0.213 Sum_probs=74.4
Q ss_pred cCHHHHHHHH-HhCCcEEEEec---CcccCCCCC-cchHHHHHHHHHHhcCCCeEEEecC--CCCHHHHHHHHHcCcCEE
Q 015722 268 LTAEDASLAI-QYGAAGIIVSN---HGARQLDYV-PATVMALEEVVQAAKGRVPVFLDGG--VRRGTDVFKALALGASGV 340 (402)
Q Consensus 268 ~~~~da~~a~-~aGad~I~vsn---~gg~~~d~~-~~~~~~l~~i~~~~~~~i~via~GG--I~~g~dv~kal~lGAd~V 340 (402)
.++++++... +.|+|.+-++. ||-+ ++. ...++.|.++++.+ ++|+++-|| |. .+++.+++.+|++.|
T Consensus 156 T~pe~a~~f~~~tgvD~LAvaiGt~Hg~y--~~~~~l~~e~l~~i~~~~--~~PLVlHGGSgi~-~e~~~~~i~~Gi~KI 230 (286)
T PRK06801 156 TDPQLARDFVDRTGIDALAVAIGNAHGKY--KGEPKLDFARLAAIHQQT--GLPLVLHGGSGIS-DADFRRAIELGIHKI 230 (286)
T ss_pred CCHHHHHHHHHHHCcCEEEeccCCCCCCC--CCCCCCCHHHHHHHHHhc--CCCEEEECCCCCC-HHHHHHHHHcCCcEE
Confidence 4678888877 89999999953 3322 122 24788999998877 699999998 87 688999999999999
Q ss_pred EEchHHHHhhhc-------CCh-------HHHHHHHHHHHHHHHHHHHHhCCC
Q 015722 341 FVGRPVPFSLAV-------DGE-------AGVRKVLQMLRDEFELTMALSGCR 379 (402)
Q Consensus 341 ~iGr~~l~~~~~-------~G~-------~gv~~~i~~l~~el~~~m~~~G~~ 379 (402)
-++|.+..+... ..+ .-.....+.+++.++..|..+|..
T Consensus 231 Nv~T~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~ 283 (286)
T PRK06801 231 NFYTGMSQAALAAVEQRMTHRHAIYDEFAELLLGIEEAISDTVAQQMRIFGSA 283 (286)
T ss_pred EehhHHHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999977654210 010 112333345666666777776643
No 206
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.51 E-value=0.001 Score=64.81 Aligned_cols=88 Identities=18% Similarity=0.138 Sum_probs=69.2
Q ss_pred HHHHHHHHccCccEEEE-eccCHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHH
Q 015722 249 KDVKWLQTITSLPILVK-GVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGT 327 (402)
Q Consensus 249 ~~i~~lr~~~~~Pv~vK-~~~~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~ 327 (402)
+.++.+|+..+...++. -+.+.++++.+.+.|+|+|.+.+ -..+.+.++++.+..++|+.+.||| +.+
T Consensus 176 ~~v~~aR~~~~~~~~Igvsv~tleea~~A~~~gaDyI~lD~----------~~~e~l~~~~~~~~~~i~i~AiGGI-t~~ 244 (277)
T PRK08072 176 KAVTSVREKLGHMVKIEVETETEEQVREAVAAGADIIMFDN----------RTPDEIREFVKLVPSAIVTEASGGI-TLE 244 (277)
T ss_pred HHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHcCCCEEEECC----------CCHHHHHHHHHhcCCCceEEEECCC-CHH
Confidence 45888888875333232 34789999999999999998853 2336777777766556889999999 599
Q ss_pred HHHHHHHcCcCEEEEchHHH
Q 015722 328 DVFKALALGASGVFVGRPVP 347 (402)
Q Consensus 328 dv~kal~lGAd~V~iGr~~l 347 (402)
.+.+..+.|+|++.+|.+..
T Consensus 245 ni~~~a~~Gvd~IAvg~l~~ 264 (277)
T PRK08072 245 NLPAYGGTGVDYISLGFLTH 264 (277)
T ss_pred HHHHHHHcCCCEEEEChhhc
Confidence 99999999999999999765
No 207
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=97.50 E-value=0.00078 Score=71.37 Aligned_cols=47 Identities=15% Similarity=0.179 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHH-cCcCEEEEchHHHHh
Q 015722 301 VMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALA-LGASGVFVGRPVPFS 349 (402)
Q Consensus 301 ~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~-lGAd~V~iGr~~l~~ 349 (402)
++.+..+.+.+ ++|||++||+.+.+|+.+++. .||+++..++.|.+.
T Consensus 471 ~~l~~~v~~~~--~ipviasGG~g~~~d~~~~~~~~~~~a~~aa~~fh~~ 518 (538)
T PLN02617 471 IELVKLVSDAV--TIPVIASSGAGTPEHFSDVFSKTNASAALAAGIFHRK 518 (538)
T ss_pred HHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHhcCCccEEEEEeeeccC
Confidence 45555566655 899999999999999999998 679999999988874
No 208
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=97.50 E-value=0.011 Score=55.42 Aligned_cols=153 Identities=24% Similarity=0.285 Sum_probs=98.4
Q ss_pred cCChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCC
Q 015722 166 TKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRS 245 (402)
Q Consensus 166 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 245 (402)
..|.....+.+++.+++|++.+ ++|.-- ..| +| +-+
T Consensus 12 saD~~~l~~el~~~~~agad~i--H~DVMD---------ghF-VP--------------------------------NiT 47 (220)
T COG0036 12 SADFARLGEELKALEAAGADLI--HIDVMD---------GHF-VP--------------------------------NIT 47 (220)
T ss_pred hCCHhHHHHHHHHHHHcCCCEE--EEeccC---------CCc-CC--------------------------------Ccc
Confidence 5678888999999999999986 444210 011 11 112
Q ss_pred ccHHHHHHHHHccCccEEEEe-ccCHHH-HHHHHHhCCcEEEEecC---------------c---------ccC------
Q 015722 246 LNWKDVKWLQTITSLPILVKG-VLTAED-ASLAIQYGAAGIIVSNH---------------G---------ARQ------ 293 (402)
Q Consensus 246 ~~~~~i~~lr~~~~~Pv~vK~-~~~~~d-a~~a~~aGad~I~vsn~---------------g---------g~~------ 293 (402)
+.-..++++++.++.|+=|-. +.+++. +....++|||.|++.-. | +|.
T Consensus 48 fGp~~v~~l~~~t~~p~DvHLMV~~p~~~i~~fa~agad~It~H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~ 127 (220)
T COG0036 48 FGPPVVKALRKITDLPLDVHLMVENPDRYIEAFAKAGADIITFHAEATEHIHRTIQLIKELGVKAGLVLNPATPLEALEP 127 (220)
T ss_pred cCHHHHHHHhhcCCCceEEEEecCCHHHHHHHHHHhCCCEEEEEeccCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHH
Confidence 344778999998888888775 455654 67778999999998521 1 011
Q ss_pred ----CC-----------CC----cchHHHHHHHHHHhcC--CCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHHHhhhc
Q 015722 294 ----LD-----------YV----PATVMALEEVVQAAKG--RVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAV 352 (402)
Q Consensus 294 ----~d-----------~~----~~~~~~l~~i~~~~~~--~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~~~~~ 352 (402)
.| +| +..++-+.++++.... ++-|-+||||. .+-+.++.++|||.+..|| .+|.
T Consensus 128 ~l~~vD~VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~~~~~~~~~~IeVDGGI~-~~t~~~~~~AGad~~VaGS-alF~--- 202 (220)
T COG0036 128 VLDDVDLVLLMSVNPGFGGQKFIPEVLEKIRELRAMIDERLDILIEVDGGIN-LETIKQLAAAGADVFVAGS-ALFG--- 202 (220)
T ss_pred HHhhCCEEEEEeECCCCcccccCHHHHHHHHHHHHHhcccCCeEEEEeCCcC-HHHHHHHHHcCCCEEEEEE-EEeC---
Confidence 01 22 2344555555555432 57799999998 6778788889999999999 4443
Q ss_pred CChHHHHHHHHHHHHHH
Q 015722 353 DGEAGVRKVLQMLRDEF 369 (402)
Q Consensus 353 ~G~~gv~~~i~~l~~el 369 (402)
.+.....++.++.++
T Consensus 203 --~~d~~~~i~~~~~~~ 217 (220)
T COG0036 203 --ADDYKATIRELRGEL 217 (220)
T ss_pred --CccHHHHHHHHHHHh
Confidence 222344555555443
No 209
>PRK01362 putative translaldolase; Provisional
Probab=97.48 E-value=0.033 Score=52.31 Aligned_cols=100 Identities=22% Similarity=0.132 Sum_probs=76.2
Q ss_pred HHHHHHHHccCccEEEEeccCHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhc---CCCeEEEecCCCC
Q 015722 249 KDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAK---GRVPVFLDGGVRR 325 (402)
Q Consensus 249 ~~i~~lr~~~~~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~---~~i~via~GGI~~ 325 (402)
+.++.+++. ++++-+=.+.+.+.+..|.++|++.|.. .-||-.|.+...+..+.++.+.+. .+..|++. .+|+
T Consensus 92 ~a~~~L~~~-Gi~v~~T~vfs~~Qa~~Aa~aGa~yisp--yvgRi~d~g~dg~~~i~~~~~~~~~~~~~tkilaA-S~r~ 167 (214)
T PRK01362 92 KAVKALSKE-GIKTNVTLIFSANQALLAAKAGATYVSP--FVGRLDDIGTDGMELIEDIREIYDNYGFDTEIIAA-SVRH 167 (214)
T ss_pred HHHHHHHHC-CCceEEeeecCHHHHHHHHhcCCcEEEe--ecchHhhcCCCHHHHHHHHHHHHHHcCCCcEEEEe-ecCC
Confidence 445566553 7888888889999999999999998876 445555566666777777766552 25566664 4999
Q ss_pred HHHHHHHHHcCcCEEEEchHHHHhhhc
Q 015722 326 GTDVFKALALGASGVFVGRPVPFSLAV 352 (402)
Q Consensus 326 g~dv~kal~lGAd~V~iGr~~l~~~~~ 352 (402)
..++.++..+|||.+-+.-.++..+..
T Consensus 168 ~~~v~~~~~~G~d~iTi~~~vl~~l~~ 194 (214)
T PRK01362 168 PMHVLEAALAGADIATIPYKVIKQLFK 194 (214)
T ss_pred HHHHHHHHHcCCCEEecCHHHHHHHHc
Confidence 999999999999999999888776643
No 210
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.47 E-value=0.0012 Score=64.23 Aligned_cols=149 Identities=20% Similarity=0.181 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHh---hhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCCcc
Q 015722 171 VDAQLVKRAERAGFKAIALTVDTPRLGRREADIK---NRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLN 247 (402)
Q Consensus 171 ~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r---~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 247 (402)
.+.++++.+++.+.+..++..-.-.+|.|.-+.. .|-..|.++.+... +-. . ..++.- . . .
T Consensus 106 ~T~~~v~~~~~~~~~~~i~~TRKt~Pg~R~l~k~Av~~GGg~~HR~gLsd~--vLi---k-------dnHi~~-~--~-i 169 (278)
T PRK08385 106 ETRKLVELVKAVNPKVRVAGTRKTLPGLRLLDKKAIIIGGGEPHRFSLSDA--ILI---K-------DNHLAL-V--P-L 169 (278)
T ss_pred HHHHHHHHHHhcCCCEEEEEeCCCChhhhHHHHHHHHhcCCcccCCCCccc--EEE---c-------cCHHHH-H--H-H
Confidence 4566777777778887777666666777664432 22112222221100 000 0 001110 0 0 1
Q ss_pred HHHHHHHHHccC-ccEEEEeccCHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHh-----cCCCeEEEec
Q 015722 248 WKDVKWLQTITS-LPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAA-----KGRVPVFLDG 321 (402)
Q Consensus 248 ~~~i~~lr~~~~-~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~-----~~~i~via~G 321 (402)
.+.++.+|+..+ .+|. =.+.+.++++.+.++|+|.|.+.|- +.+.+.++++.+ ++++.+.++|
T Consensus 170 ~~av~~~r~~~~~~kIe-VEv~~leea~~a~~agaDiI~LDn~----------~~e~l~~~v~~l~~~~~~~~~~leaSG 238 (278)
T PRK08385 170 EEAIRRAKEFSVYKVVE-VEVESLEDALKAAKAGADIIMLDNM----------TPEEIREVIEALKREGLRERVKIEVSG 238 (278)
T ss_pred HHHHHHHHHhCCCCcEE-EEeCCHHHHHHHHHcCcCEEEECCC----------CHHHHHHHHHHHHhcCcCCCEEEEEEC
Confidence 245778877653 4433 3568999999999999999999873 234555555433 2478999999
Q ss_pred CCCCHHHHHHHHHcCcCEEEEchHHH
Q 015722 322 GVRRGTDVFKALALGASGVFVGRPVP 347 (402)
Q Consensus 322 GI~~g~dv~kal~lGAd~V~iGr~~l 347 (402)
|| +.+.+.++..+|+|.+.+|.+..
T Consensus 239 GI-~~~ni~~yA~tGvD~Is~galt~ 263 (278)
T PRK08385 239 GI-TPENIEEYAKLDVDVISLGALTH 263 (278)
T ss_pred CC-CHHHHHHHHHcCCCEEEeChhhc
Confidence 99 69999999999999999999765
No 211
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.46 E-value=0.00067 Score=64.39 Aligned_cols=75 Identities=27% Similarity=0.394 Sum_probs=60.1
Q ss_pred HHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHH
Q 015722 270 AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVP 347 (402)
Q Consensus 270 ~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l 347 (402)
.+.++.+.+.|++.+.+-...+ .........+.+.++.+.. .+|+++.|||++.+|+.+++.+||+.|.+|+..+
T Consensus 35 ~e~a~~~~~~G~~~l~i~dl~~-~~~~~~~~~~~i~~i~~~~--~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~~ 109 (241)
T PRK13585 35 VEVAKRWVDAGAETLHLVDLDG-AFEGERKNAEAIEKIIEAV--GVPVQLGGGIRSAEDAASLLDLGVDRVILGTAAV 109 (241)
T ss_pred HHHHHHHHHcCCCEEEEEechh-hhcCCcccHHHHHHHHHHc--CCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHHh
Confidence 3668888899999998854321 1113345677888888776 7999999999999999999999999999999665
No 212
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=97.45 E-value=0.00085 Score=63.41 Aligned_cols=76 Identities=22% Similarity=0.243 Sum_probs=61.0
Q ss_pred HHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHHH
Q 015722 270 AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 348 (402)
Q Consensus 270 ~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~ 348 (402)
.+-|+...+.|++.|.+..-.+ .........+.+.++++.+ ++||+++|||++.+|+.+++.+||+.|.+|+..+.
T Consensus 33 ~~~a~~~~~~g~~~i~i~dl~~-~~~~~~~n~~~~~~i~~~~--~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~~~l~ 108 (232)
T TIGR03572 33 VNAARIYNAKGADELIVLDIDA-SKRGREPLFELISNLAEEC--FMPLTVGGGIRSLEDAKKLLSLGADKVSINTAALE 108 (232)
T ss_pred HHHHHHHHHcCCCEEEEEeCCC-cccCCCCCHHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhc
Confidence 3557778889999999865422 1113356778889998876 79999999999999999999999999999997764
No 213
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=97.44 E-value=0.0015 Score=62.89 Aligned_cols=87 Identities=23% Similarity=0.352 Sum_probs=61.0
Q ss_pred HHHHHHccCccEEEEec--------cCH---HH-HHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEE
Q 015722 251 VKWLQTITSLPILVKGV--------LTA---ED-ASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVF 318 (402)
Q Consensus 251 i~~lr~~~~~Pv~vK~~--------~~~---~d-a~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~vi 318 (402)
+..+...++.|+++... .+. .. ++.+.++|+|+|.++.. ..++.+.++.+.. ++||+
T Consensus 128 i~~~~~~~g~~liv~~~~~Gvh~~~~~~~~~~~~~~~a~~~GADyikt~~~---------~~~~~l~~~~~~~--~iPVv 196 (258)
T TIGR01949 128 IAEICDDWGVPLLAMMYPRGPHIDDRDPELVAHAARLGAELGADIVKTPYT---------GDIDSFRDVVKGC--PAPVV 196 (258)
T ss_pred HHHHHHHcCCCEEEEEeccCcccccccHHHHHHHHHHHHHHCCCEEeccCC---------CCHHHHHHHHHhC--CCcEE
Confidence 33444446788887421 122 22 46778999999998521 2467777777655 79999
Q ss_pred EecCCC--CHHHHH----HHHHcCcCEEEEchHHHH
Q 015722 319 LDGGVR--RGTDVF----KALALGASGVFVGRPVPF 348 (402)
Q Consensus 319 a~GGI~--~g~dv~----kal~lGAd~V~iGr~~l~ 348 (402)
+.|||+ +.++++ .++.+||+++.+|+.++.
T Consensus 197 a~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~ 232 (258)
T TIGR01949 197 VAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQ 232 (258)
T ss_pred EecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhc
Confidence 999999 655554 444899999999998775
No 214
>KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism]
Probab=97.43 E-value=0.0035 Score=57.84 Aligned_cols=35 Identities=46% Similarity=0.788 Sum_probs=31.1
Q ss_pred CCCeE--EEecCCCCHHHHHHHHHcCcCEEEEchHHH
Q 015722 313 GRVPV--FLDGGVRRGTDVFKALALGASGVFVGRPVP 347 (402)
Q Consensus 313 ~~i~v--ia~GGI~~g~dv~kal~lGAd~V~iGr~~l 347 (402)
+++|| ++.|||.|+.|+.-.+.||||+|.+|+-.+
T Consensus 206 GrlPVV~FAaGGvaTPADAALmMQLGCdGVFVGSgiF 242 (296)
T KOG1606|consen 206 GRLPVVNFAAGGVATPADAALMMQLGCDGVFVGSGIF 242 (296)
T ss_pred CCCceEEecccCcCChhHHHHHHHcCCCeEEeccccc
Confidence 46776 799999999999999999999999999554
No 215
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=97.40 E-value=0.0014 Score=59.34 Aligned_cols=89 Identities=24% Similarity=0.245 Sum_probs=66.2
Q ss_pred HHHHHHHHccC-ccEEEEeccCHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHH---HhcCCCeEEEecCCC
Q 015722 249 KDVKWLQTITS-LPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQ---AAKGRVPVFLDGGVR 324 (402)
Q Consensus 249 ~~i~~lr~~~~-~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~---~~~~~i~via~GGI~ 324 (402)
+.++.+++..+ .+.+.=.+.+.++++.+.++|+|.|.+.|- .+ +.+.++.+ ....++.|.++|||.
T Consensus 68 ~av~~~~~~~~~~~~I~VEv~~~ee~~ea~~~g~d~I~lD~~-------~~---~~~~~~v~~l~~~~~~v~ie~SGGI~ 137 (169)
T PF01729_consen 68 EAVKAARQAAPEKKKIEVEVENLEEAEEALEAGADIIMLDNM-------SP---EDLKEAVEELRELNPRVKIEASGGIT 137 (169)
T ss_dssp HHHHHHHHHSTTTSEEEEEESSHHHHHHHHHTT-SEEEEES--------CH---HHHHHHHHHHHHHTTTSEEEEESSSS
T ss_pred HHHHHHHHhCCCCceEEEEcCCHHHHHHHHHhCCCEEEecCc-------CH---HHHHHHHHHHhhcCCcEEEEEECCCC
Confidence 45788888764 332333567899999999999999999873 23 44444444 455689999999997
Q ss_pred CHHHHHHHHHcCcCEEEEchHHHH
Q 015722 325 RGTDVFKALALGASGVFVGRPVPF 348 (402)
Q Consensus 325 ~g~dv~kal~lGAd~V~iGr~~l~ 348 (402)
.+.+.++..+|+|.+.+|+....
T Consensus 138 -~~ni~~ya~~gvD~isvg~~~~~ 160 (169)
T PF01729_consen 138 -LENIAEYAKTGVDVISVGSLTHS 160 (169)
T ss_dssp -TTTHHHHHHTT-SEEEECHHHHS
T ss_pred -HHHHHHHHhcCCCEEEcChhhcC
Confidence 89999999999999999997654
No 216
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.40 E-value=0.0008 Score=63.77 Aligned_cols=75 Identities=17% Similarity=0.270 Sum_probs=57.1
Q ss_pred CHH-HHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHH
Q 015722 269 TAE-DASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVP 347 (402)
Q Consensus 269 ~~~-da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l 347 (402)
++. .|+...+. ++.+.+-.--|. ..+.++.++.+.++.+.+ .+||+++|||++-+|+.+++.+||+.|.+|+..+
T Consensus 31 dp~~~a~~~~~~-~~~l~ivDldga-~~g~~~n~~~i~~i~~~~--~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~ 106 (228)
T PRK04128 31 DPVEIALRFSEY-VDKIHVVDLDGA-FEGKPKNLDVVKNIIRET--GLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAF 106 (228)
T ss_pred CHHHHHHHHHHh-CCEEEEEECcch-hcCCcchHHHHHHHHhhC--CCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhc
Confidence 443 45565566 888877432221 223356788899998876 7999999999999999999999999999999755
No 217
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=97.40 E-value=0.0012 Score=61.86 Aligned_cols=77 Identities=22% Similarity=0.264 Sum_probs=62.0
Q ss_pred cCHHHHHHHHHhCCcEEEEecC-cccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHH
Q 015722 268 LTAEDASLAIQYGAAGIIVSNH-GARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPV 346 (402)
Q Consensus 268 ~~~~da~~a~~aGad~I~vsn~-gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~ 346 (402)
.++-.+++++++||.+|.=-+. =| ..-|+-+...|.-|.+.. ++|||+|-||.+++|+..++.+|||+|++-+++
T Consensus 139 dD~v~arrLee~GcaavMPl~aPIG--Sg~G~~n~~~l~iiie~a--~VPviVDAGiG~pSdAa~aMElG~DaVL~NTAi 214 (262)
T COG2022 139 DDPVLARRLEEAGCAAVMPLGAPIG--SGLGLQNPYNLEIIIEEA--DVPVIVDAGIGTPSDAAQAMELGADAVLLNTAI 214 (262)
T ss_pred CCHHHHHHHHhcCceEecccccccc--CCcCcCCHHHHHHHHHhC--CCCEEEeCCCCChhHHHHHHhcccceeehhhHh
Confidence 4567799999999998863211 01 113567778888888877 899999999999999999999999999999976
Q ss_pred HH
Q 015722 347 PF 348 (402)
Q Consensus 347 l~ 348 (402)
-.
T Consensus 215 A~ 216 (262)
T COG2022 215 AR 216 (262)
T ss_pred hc
Confidence 54
No 218
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=97.39 E-value=0.002 Score=60.65 Aligned_cols=75 Identities=29% Similarity=0.363 Sum_probs=60.4
Q ss_pred HHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHHH
Q 015722 271 EDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 348 (402)
Q Consensus 271 ~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~ 348 (402)
+.|+...+.|++.+.+-.-.+. ..+.....+.+.++.+.+ .+|+.+.|||++.+|+.+++.+||+.|.+|+..+.
T Consensus 32 ~~a~~~~~~g~~~l~v~dl~~~-~~g~~~~~~~i~~i~~~~--~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs~~l~ 106 (230)
T TIGR00007 32 EAAKKWEEEGAERIHVVDLDGA-KEGGPVNLPVIKKIVRET--GVPVQVGGGIRSLEDVEKLLDLGVDRVIIGTAAVE 106 (230)
T ss_pred HHHHHHHHcCCCEEEEEeCCcc-ccCCCCcHHHHHHHHHhc--CCCEEEeCCcCCHHHHHHHHHcCCCEEEEChHHhh
Confidence 5577788999999998643221 123445778889988877 79999999999999999999999999999987653
No 219
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=97.37 E-value=0.0062 Score=58.42 Aligned_cols=196 Identities=16% Similarity=0.208 Sum_probs=96.1
Q ss_pred CCceeecccccccccCChhhHHHHHHHHHcCCeEEec--CC-------ccC------------CH---HHHhhcCC-Cce
Q 015722 105 SMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLS--SW-------ATS------------SV---EEVSSTGP-GIR 159 (402)
Q Consensus 105 ~~Pi~iAPm~~~~~~~~~ge~ala~aa~~~G~~~~vs--~~-------~~~------------s~---eei~~~~~-~~~ 159 (402)
.-||+-+..|. + -.|+.+.+.|+.+.+. +. +|. .. +||....+ .|.
T Consensus 14 ~~pIig~gaGt-G--------lsAk~ae~gGaDlI~~ynsGrfR~~G~~SlagllpygnaN~iv~em~~eiLp~v~~tPV 84 (268)
T PF09370_consen 14 GKPIIGAGAGT-G--------LSAKCAEKGGADLILIYNSGRFRMAGRGSLAGLLPYGNANEIVMEMAREILPVVKDTPV 84 (268)
T ss_dssp T--EEEEEESS-H--------HHHHHHHHTT-SEEEE-HHHHHHHTT--GGGGGBTEEEHHHHHHHHHHHHGGG-SSS-E
T ss_pred CCceEEEeecc-c--------hhhHHHHhcCCCEEEEecchhHhhCCCcchhhhhcccCHhHHHHHHHHhhhhhccCCCE
Confidence 35766555433 2 4799999999988773 21 111 01 23333333 567
Q ss_pred EEEEeecCChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhh
Q 015722 160 FFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVA 239 (402)
Q Consensus 160 ~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (402)
++=+........+...+++.++.||..+. +-|..|.-.-..|+. +.
T Consensus 85 iaGv~atDP~~~~~~fl~~lk~~Gf~GV~---NfPTvgliDG~fR~~-------------------------------LE 130 (268)
T PF09370_consen 85 IAGVCATDPFRDMDRFLDELKELGFSGVQ---NFPTVGLIDGQFRQN-------------------------------LE 130 (268)
T ss_dssp EEEE-TT-TT--HHHHHHHHHHHT-SEEE---E-S-GGG--HHHHHH-------------------------------HH
T ss_pred EEEecCcCCCCcHHHHHHHHHHhCCceEE---ECCcceeeccHHHHH-------------------------------HH
Confidence 77776444445678889999999999975 445543211111111 11
Q ss_pred hhcCCCccH-HHHHHHHHcc-CccEEEEeccCHHHHHHHHHhCCcEEEEec---CcccC-CCCCcch---HHHHHHHHHH
Q 015722 240 NQIDRSLNW-KDVKWLQTIT-SLPILVKGVLTAEDASLAIQYGAAGIIVSN---HGARQ-LDYVPAT---VMALEEVVQA 310 (402)
Q Consensus 240 ~~~d~~~~~-~~i~~lr~~~-~~Pv~vK~~~~~~da~~a~~aGad~I~vsn---~gg~~-~d~~~~~---~~~l~~i~~~ 310 (402)
.....+ .+|+-++... ..-+.+.-+.++++|+...++|+|.|++.- .||.. .+...+- .+.+.++.++
T Consensus 131 ---e~Gmgy~~EVemi~~A~~~gl~T~~yvf~~e~A~~M~~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~a 207 (268)
T PF09370_consen 131 ---ETGMGYDREVEMIRKAHEKGLFTTAYVFNEEQARAMAEAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDA 207 (268)
T ss_dssp ---HTT--HHHHHHHHHHHHHTT-EE--EE-SHHHHHHHHHHT-SEEEEE-SS----------S--HHHHHHHHHHHHHH
T ss_pred ---hcCCCHHHHHHHHHHHHHCCCeeeeeecCHHHHHHHHHcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHH
Confidence 011222 2345444433 123444556799999999999999999841 12321 1122221 2233444443
Q ss_pred h---cCCCeEEEe-cCCCCHHHHHHHHH--cCcCEEEEchHH
Q 015722 311 A---KGRVPVFLD-GGVRRGTDVFKALA--LGASGVFVGRPV 346 (402)
Q Consensus 311 ~---~~~i~via~-GGI~~g~dv~kal~--lGAd~V~iGr~~ 346 (402)
+ .+++-+++- |-|.+++|+...+. .|+++..-|+.+
T Consensus 208 a~~v~~dii~l~hGGPI~~p~D~~~~l~~t~~~~Gf~G~Ss~ 249 (268)
T PF09370_consen 208 ARAVNPDIIVLCHGGPIATPEDAQYVLRNTKGIHGFIGASSM 249 (268)
T ss_dssp HHCC-TT-EEEEECTTB-SHHHHHHHHHH-TTEEEEEESTTT
T ss_pred HHHhCCCeEEEEeCCCCCCHHHHHHHHhcCCCCCEEecccch
Confidence 3 345545554 46999999999998 368888888754
No 220
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.36 E-value=0.0011 Score=63.03 Aligned_cols=76 Identities=14% Similarity=0.124 Sum_probs=60.4
Q ss_pred CH-HHHHHHHH-hCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHH
Q 015722 269 TA-EDASLAIQ-YGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPV 346 (402)
Q Consensus 269 ~~-~da~~a~~-aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~ 346 (402)
++ +.|+...+ .|+|.+.+..--+. ..+.+...+.+.++.+.+ .+||.+.|||||-+|+.+++.+||+-|.+|+..
T Consensus 32 dp~~~a~~~~~~~Ga~~l~ivDLd~a-~~~~~~n~~~I~~i~~~~--~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt~a 108 (234)
T PRK13587 32 SAEESIAYYSQFECVNRIHIVDLIGA-KAQHAREFDYIKSLRRLT--TKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKG 108 (234)
T ss_pred CHHHHHHHHHhccCCCEEEEEECccc-ccCCcchHHHHHHHHhhc--CCeEEEcCCcCCHHHHHHHHHCCCCEEEECchH
Confidence 44 55666777 69999998643221 123456788999998876 799999999999999999999999999999965
Q ss_pred H
Q 015722 347 P 347 (402)
Q Consensus 347 l 347 (402)
+
T Consensus 109 ~ 109 (234)
T PRK13587 109 I 109 (234)
T ss_pred h
Confidence 4
No 221
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=97.36 E-value=0.057 Score=50.94 Aligned_cols=100 Identities=15% Similarity=0.140 Sum_probs=73.2
Q ss_pred HHHHHHHHccCccEEEEeccCHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHh---cCCCeEEEecCCCC
Q 015722 249 KDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAA---KGRVPVFLDGGVRR 325 (402)
Q Consensus 249 ~~i~~lr~~~~~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~---~~~i~via~GGI~~ 325 (402)
+.++.+++. ++++-+=.+.+.+.|..|..+|++.|... -||-.+.|...+..+.++.+.+ +.+..|++.+ +++
T Consensus 94 ~A~~~L~~~-GI~vn~T~vfs~~Qa~~Aa~aGa~yIspy--vgR~~~~g~dg~~~i~~i~~~~~~~~~~tkILaAS-~r~ 169 (220)
T PRK12653 94 AAIKMLKAE-GIPTLGTAVYGAAQGLLSALAGAEYVAPY--VNRIDAQGGSGIQTVTDLQQLLKMHAPQAKVLAAS-FKT 169 (220)
T ss_pred HHHHHHHHc-CCCeeEEEecCHHHHHHHHhcCCcEEEee--cChHhhcCCChHHHHHHHHHHHHhcCCCcEEEEEe-cCC
Confidence 445555553 78888888899999999999999987763 3443344444455555555443 3356677655 999
Q ss_pred HHHHHHHHHcCcCEEEEchHHHHhhhc
Q 015722 326 GTDVFKALALGASGVFVGRPVPFSLAV 352 (402)
Q Consensus 326 g~dv~kal~lGAd~V~iGr~~l~~~~~ 352 (402)
..++.+++.+|||.+-+.-.++..+..
T Consensus 170 ~~~v~~~~~~G~d~vTip~~vl~~l~~ 196 (220)
T PRK12653 170 PRQALDCLLAGCESITLPLDVAQQMIS 196 (220)
T ss_pred HHHHHHHHHcCCCEEECCHHHHHHHHc
Confidence 999999999999999999988877653
No 222
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=97.34 E-value=0.016 Score=53.99 Aligned_cols=97 Identities=11% Similarity=0.133 Sum_probs=55.8
Q ss_pred HHHHHHHccCccEEEEec-cCHHHHHHHHHhCCcEEEEecC--cccCCCCCcchHHHHHHHHHHhcC---CCeEEEecCC
Q 015722 250 DVKWLQTITSLPILVKGV-LTAEDASLAIQYGAAGIIVSNH--GARQLDYVPATVMALEEVVQAAKG---RVPVFLDGGV 323 (402)
Q Consensus 250 ~i~~lr~~~~~Pv~vK~~-~~~~da~~a~~aGad~I~vsn~--gg~~~d~~~~~~~~l~~i~~~~~~---~i~via~GGI 323 (402)
.++.+++. ++.+++-.. .+..+..+....++|+|.+... |++.....+...+.+.++++.... ..+|.++|||
T Consensus 101 ~~~~~~~~-~~~~g~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI 179 (220)
T PRK05581 101 LLQLIKSA-GIKAGLVLNPATPLEPLEDVLDLLDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGI 179 (220)
T ss_pred HHHHHHHc-CCEEEEEECCCCCHHHHHHHHhhCCEEEEEEECCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCC
Confidence 35555553 333333221 2333333344456898876532 222111122234455555544321 1457799999
Q ss_pred CCHHHHHHHHHcCcCEEEEchHHHH
Q 015722 324 RRGTDVFKALALGASGVFVGRPVPF 348 (402)
Q Consensus 324 ~~g~dv~kal~lGAd~V~iGr~~l~ 348 (402)
+. +++.+++..|+|+|.+||+++.
T Consensus 180 ~~-~nv~~l~~~GaD~vvvgSai~~ 203 (220)
T PRK05581 180 NA-DNIKECAEAGADVFVAGSAVFG 203 (220)
T ss_pred CH-HHHHHHHHcCCCEEEEChhhhC
Confidence 97 8999999999999999999774
No 223
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=97.34 E-value=0.0018 Score=58.84 Aligned_cols=77 Identities=23% Similarity=0.286 Sum_probs=58.3
Q ss_pred eccCHHHHHHHHHhCCcEEEEecCcccCC--CCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEc
Q 015722 266 GVLTAEDASLAIQYGAAGIIVSNHGARQL--DYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVG 343 (402)
Q Consensus 266 ~~~~~~da~~a~~aGad~I~vsn~gg~~~--d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iG 343 (402)
-+-+.++++.+.+.|+|++.++.--.+.- +..+..++.+.++.+.. ++||++-||| +.+++.+...+||++|.+-
T Consensus 101 S~h~~~e~~~a~~~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~--~~pv~AlGGI-~~~~i~~l~~~Ga~gvAvi 177 (180)
T PF02581_consen 101 SCHSLEEAREAEELGADYVFLGPVFPTSSKPGAPPLGLDGLREIARAS--PIPVYALGGI-TPENIPELREAGADGVAVI 177 (180)
T ss_dssp EESSHHHHHHHHHCTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHT--SSCEEEESS---TTTHHHHHHTT-SEEEES
T ss_pred ecCcHHHHHHhhhcCCCEEEECCccCCCCCccccccCHHHHHHHHHhC--CCCEEEEcCC-CHHHHHHHHHcCCCEEEEE
Confidence 45788999999999999999975322221 12344578888888877 7999999999 5999999999999999987
Q ss_pred hH
Q 015722 344 RP 345 (402)
Q Consensus 344 r~ 345 (402)
++
T Consensus 178 ~a 179 (180)
T PF02581_consen 178 SA 179 (180)
T ss_dssp HH
T ss_pred ee
Confidence 75
No 224
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=97.34 E-value=0.013 Score=57.38 Aligned_cols=86 Identities=15% Similarity=0.136 Sum_probs=66.1
Q ss_pred HHHHHHHHccCccEEEEeccCHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHh---cCCCeEEEecCCCC
Q 015722 249 KDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAA---KGRVPVFLDGGVRR 325 (402)
Q Consensus 249 ~~i~~lr~~~~~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~---~~~i~via~GGI~~ 325 (402)
+.++.+|+..+...+.=.+.+.++++.+.++|+|.|.+.|- +.+.+.++.+.+ .+++.+-++|||.
T Consensus 178 ~av~~~r~~~~~~kIeVEv~tleqa~ea~~agaDiI~LDn~----------~~e~l~~av~~~~~~~~~~~leaSGGI~- 246 (284)
T PRK06096 178 GAINQLRRHAPEKKIVVEADTPKEAIAALRAQPDVLQLDKF----------SPQQATEIAQIAPSLAPHCTLSLAGGIN- 246 (284)
T ss_pred HHHHHHHHhCCCCCEEEECCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhhccCCCeEEEEECCCC-
Confidence 45888888764222334568999999999999999999773 234445554443 2578999999997
Q ss_pred HHHHHHHHHcCcCEEEEchH
Q 015722 326 GTDVFKALALGASGVFVGRP 345 (402)
Q Consensus 326 g~dv~kal~lGAd~V~iGr~ 345 (402)
.+.+.++..+|+|.+.+|.+
T Consensus 247 ~~ni~~yA~tGvD~Is~gal 266 (284)
T PRK06096 247 LNTLKNYADCGIRLFITSAP 266 (284)
T ss_pred HHHHHHHHhcCCCEEEECcc
Confidence 89999999999999999986
No 225
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=97.33 E-value=0.013 Score=57.15 Aligned_cols=86 Identities=14% Similarity=0.122 Sum_probs=65.8
Q ss_pred HHHHHHHHccC-ccEEEEeccCHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHh---cCCCeEEEecCCC
Q 015722 249 KDVKWLQTITS-LPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAA---KGRVPVFLDGGVR 324 (402)
Q Consensus 249 ~~i~~lr~~~~-~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~---~~~i~via~GGI~ 324 (402)
+.++.+|+..+ .++. =.+.+.++++.+.++|+|.|.+.|- +.+.+.++.+.+ ..++.+.++|||.
T Consensus 177 ~av~~~r~~~~~~kIe-VEv~tleea~ea~~~GaDiI~lDn~----------~~e~l~~~v~~l~~~~~~~~leasGGI~ 245 (277)
T TIGR01334 177 GAIGRLKQTAPERKIT-VEADTIEQALTVLQASPDILQLDKF----------TPQQLHHLHERLKFFDHIPTLAAAGGIN 245 (277)
T ss_pred HHHHHHHHhCCCCCEE-EECCCHHHHHHHHHcCcCEEEECCC----------CHHHHHHHHHHHhccCCCEEEEEECCCC
Confidence 45888888653 3333 3557999999999999999999762 223444444444 3578899999997
Q ss_pred CHHHHHHHHHcCcCEEEEchHH
Q 015722 325 RGTDVFKALALGASGVFVGRPV 346 (402)
Q Consensus 325 ~g~dv~kal~lGAd~V~iGr~~ 346 (402)
.+.+.++..+|+|.+.+|.++
T Consensus 246 -~~ni~~ya~~GvD~is~gal~ 266 (277)
T TIGR01334 246 -PENIADYIEAGIDLFITSAPY 266 (277)
T ss_pred -HHHHHHHHhcCCCEEEeCcce
Confidence 999999999999999999874
No 226
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=97.33 E-value=0.062 Score=50.73 Aligned_cols=99 Identities=21% Similarity=0.175 Sum_probs=73.9
Q ss_pred HHHHHHHHccCccEEEEeccCHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHh---cCCCeEEEecCCCC
Q 015722 249 KDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAA---KGRVPVFLDGGVRR 325 (402)
Q Consensus 249 ~~i~~lr~~~~~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~---~~~i~via~GGI~~ 325 (402)
+.++.+++. ++++-+=.+.+++.+..|.++||+.|.. .-||--|.|.-....+.++.+.+ ..+..|++.+ +|+
T Consensus 96 ~Ai~~L~~~-Gi~vn~T~ifs~~Qa~~Aa~aGa~yvsP--yvgRi~d~g~D~~~~i~~i~~~~~~~~~~tkILaAS-~r~ 171 (222)
T PRK12656 96 AAIKTLKAE-GYHITATAIYTVFQGLLAIEAGADYLAP--YYNRMENLNIDSNAVIGQLAEAIDRENSDSKILAAS-FKN 171 (222)
T ss_pred HHHHHHHHC-CCceEEeeeCCHHHHHHHHHCCCCEEec--ccchhhhcCCCHHHHHHHHHHHHHhcCCCCEEEEEe-cCC
Confidence 445666554 7888888899999999999999998765 43553344444445555555443 3467777766 999
Q ss_pred HHHHHHHHHcCcCEEEEchHHHHhhh
Q 015722 326 GTDVFKALALGASGVFVGRPVPFSLA 351 (402)
Q Consensus 326 g~dv~kal~lGAd~V~iGr~~l~~~~ 351 (402)
..++.+++.+||+.|-+.-.++..+.
T Consensus 172 ~~~v~~a~~~G~d~vTvp~~vl~~l~ 197 (222)
T PRK12656 172 VAQVNKAFALGAQAVTAGPDVFEAAF 197 (222)
T ss_pred HHHHHHHHHcCCCEEecCHHHHHHHh
Confidence 99999999999999999988877654
No 227
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=97.32 E-value=0.048 Score=51.43 Aligned_cols=112 Identities=17% Similarity=0.122 Sum_probs=77.5
Q ss_pred HHHHHHHHccCccEEEEeccCHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHh---cCCCeEEEecCCCC
Q 015722 249 KDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAA---KGRVPVFLDGGVRR 325 (402)
Q Consensus 249 ~~i~~lr~~~~~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~---~~~i~via~GGI~~ 325 (402)
+.++.+++. ++++-+=.+.+++.|..|..+|+++|.. .-||--+.|...+..+.++.+.+ +.+..|++.+ +++
T Consensus 94 ~Ai~~L~~~-GI~vn~T~vfs~~Qa~~Aa~aGa~yIsp--yvgR~~~~g~dg~~~i~~~~~~~~~~~~~tkILaAS-~r~ 169 (220)
T PRK12655 94 AAIKKLKKE-GIPTLGTAVYSAAQGLLAALAGAKYVAP--YVNRVDAQGGDGIRMVQELQTLLEMHAPESMVLAAS-FKT 169 (220)
T ss_pred HHHHHHHHC-CCceeEeEecCHHHHHHHHHcCCeEEEe--ecchHhHcCCCHHHHHHHHHHHHHhcCCCcEEEEEe-cCC
Confidence 445555553 7888887889999999999999998766 33443333444455555555443 3356677755 999
Q ss_pred HHHHHHHHHcCcCEEEEchHHHHhhhcCC--hHHHHHHHHH
Q 015722 326 GTDVFKALALGASGVFVGRPVPFSLAVDG--EAGVRKVLQM 364 (402)
Q Consensus 326 g~dv~kal~lGAd~V~iGr~~l~~~~~~G--~~gv~~~i~~ 364 (402)
..++.+++.+||+.+-+.-.++..+...- ..+++.+.+.
T Consensus 170 ~~~v~~~~~~G~d~vTip~~vl~~l~~~p~t~~~~~~F~~d 210 (220)
T PRK12655 170 PRQALDCLLAGCQSITLPLDVAQQMLNTPAVESAIEKFEQD 210 (220)
T ss_pred HHHHHHHHHcCCCEEECCHHHHHHHHcCCChHHHHHHHHHH
Confidence 99999999999999999998887665321 2444444333
No 228
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=97.32 E-value=0.00086 Score=64.30 Aligned_cols=69 Identities=26% Similarity=0.148 Sum_probs=59.9
Q ss_pred HHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHHH
Q 015722 270 AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 348 (402)
Q Consensus 270 ~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~ 348 (402)
.+.|+.-.++|++.+.|-.- |.+..+.+.++.+.+ .+||.+.||||+ +++.+++.+||+.|.+|+..+.
T Consensus 41 ~~~A~~~~~~Ga~~lHvVDL-------g~~n~~~i~~i~~~~--~~~v~vGGGIr~-e~v~~~l~aGa~rVvIGS~av~ 109 (253)
T TIGR02129 41 SYYAKLYKDDGVKGCHVIML-------GPNNDDAAKEALHAY--PGGLQVGGGIND-TNAQEWLDEGASHVIVTSWLFT 109 (253)
T ss_pred HHHHHHHHHcCCCEEEEEEC-------CCCcHHHHHHHHHhC--CCCEEEeCCcCH-HHHHHHHHcCCCEEEECcHHHh
Confidence 57789999999999998543 344888999999877 699999999998 9999999999999999997654
No 229
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=97.31 E-value=0.026 Score=54.14 Aligned_cols=201 Identities=22% Similarity=0.245 Sum_probs=110.9
Q ss_pred ccceeecCcccCCceee-cccccccccCChhhHHHHHHHHHcCCeEEec-CCccCCHHHHhhcCCCceEEEEeecCChhH
Q 015722 94 DMTTTVLGFNISMPIMI-APTAFQKMAHPEGECATARAASAAGTIMTLS-SWATSSVEEVSSTGPGIRFFQLYVTKHRNV 171 (402)
Q Consensus 94 d~st~i~G~~l~~Pi~i-APm~~~~~~~~~ge~ala~aa~~~G~~~~vs-~~~~~s~eei~~~~~~~~~~QLy~~~d~~~ 171 (402)
++...+.+.....+.++ .|.+.- .++--+.+|+.++++|+.+.-. .+.+ +. .+.-|| +-..+-
T Consensus 3 ~~~~~~~~~~~~~~~~iaGPC~vE---s~e~~~~~a~~~~~~g~~~~r~g~~kp-------Rt--s~~sf~---G~G~~g 67 (250)
T PRK13397 3 DIMSDFQNKTCSKNNFIVGPCSIE---SYDHIRLAASSAKKLGYNYFRGGAYKP-------RT--SAASFQ---GLGLQG 67 (250)
T ss_pred cceEEecCccCCCCcEEeccCccC---CHHHHHHHHHHHHHcCCCEEEecccCC-------CC--CCcccC---CCCHHH
Confidence 33444444555555444 565443 2333468999999999998874 2221 11 234455 223456
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCC-ccHHH
Q 015722 172 DAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRS-LNWKD 250 (402)
Q Consensus 172 ~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~ 250 (402)
...+.+.+++.|...+- ++-.+ +.-+....+ ++- + .+. ... ...+.
T Consensus 68 l~~L~~~~~~~Gl~~~T-ev~d~----~~v~~~~e~-vdi-l-----------------------qIg---s~~~~n~~L 114 (250)
T PRK13397 68 IRYLHEVCQEFGLLSVS-EIMSE----RQLEEAYDY-LDV-I-----------------------QVG---ARNMQNFEF 114 (250)
T ss_pred HHHHHHHHHHcCCCEEE-eeCCH----HHHHHHHhc-CCE-E-----------------------EEC---cccccCHHH
Confidence 66777777888877653 22111 111111110 000 0 000 011 13456
Q ss_pred HHHHHHccCccEEEEec--cCHHH----HHHHHHhCCcEEEEecCcccCCCCC---cchHHHHHHHHHHhcCCCeEEEec
Q 015722 251 VKWLQTITSLPILVKGV--LTAED----ASLAIQYGAAGIIVSNHGARQLDYV---PATVMALEEVVQAAKGRVPVFLDG 321 (402)
Q Consensus 251 i~~lr~~~~~Pv~vK~~--~~~~d----a~~a~~aGad~I~vsn~gg~~~d~~---~~~~~~l~~i~~~~~~~i~via~G 321 (402)
++.+.+ ++.||++|-. .++++ ++.+.+.|..-|++--.|-+..... ...+..++.+++.. .+||+++=
T Consensus 115 L~~va~-tgkPVilk~G~~~t~~e~~~A~e~i~~~Gn~~i~L~eRg~~~Y~~~~~n~~dl~ai~~lk~~~--~lPVivd~ 191 (250)
T PRK13397 115 LKTLSH-IDKPILFKRGLMATIEEYLGALSYLQDTGKSNIILCERGVRGYDVETRNMLDIMAVPIIQQKT--DLPIIVDV 191 (250)
T ss_pred HHHHHc-cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEccccCCCCCccccccCHHHHHHHHHHh--CCCeEECC
Confidence 677655 5899999954 56766 4556678887776652242221111 34456677777655 68999974
Q ss_pred ----CCCC--HHHHHHHHHcCcCEEEEchH
Q 015722 322 ----GVRR--GTDVFKALALGASGVFVGRP 345 (402)
Q Consensus 322 ----GI~~--g~dv~kal~lGAd~V~iGr~ 345 (402)
|.|. ..-...|+++|||+++|-+-
T Consensus 192 SHs~G~r~~v~~~a~AAvA~GAdGl~IE~H 221 (250)
T PRK13397 192 SHSTGRRDLLLPAAKIAKAVGANGIMMEVH 221 (250)
T ss_pred CCCCcccchHHHHHHHHHHhCCCEEEEEec
Confidence 4433 13456788899999999873
No 230
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=97.30 E-value=0.016 Score=59.04 Aligned_cols=184 Identities=15% Similarity=0.127 Sum_probs=105.5
Q ss_pred cCCceeecccccccccCChhhHHHHHHHHHcCCe-EEecCC-----ccCCHHHHhhcCC-CceEEEEeecCChhHHHHHH
Q 015722 104 ISMPIMIAPTAFQKMAHPEGECATARAASAAGTI-MTLSSW-----ATSSVEEVSSTGP-GIRFFQLYVTKHRNVDAQLV 176 (402)
Q Consensus 104 l~~Pi~iAPm~~~~~~~~~ge~ala~aa~~~G~~-~~vs~~-----~~~s~eei~~~~~-~~~~~QLy~~~d~~~~~~~l 176 (402)
+..|.++-++-... .+.-+.+++.....+.. +=+++. ....++++++..+ .+..+.|.. .|.+.+. +
T Consensus 170 ~~~p~L~vALD~~~---~~~A~~i~~~l~~~~~~~iKvG~~L~~~~G~~iVk~Lr~~~~~~~I~~DLK~-~Di~~~v--v 243 (391)
T PRK13307 170 WDPPYLQVALDLPD---LEEVERVLSQLPKSDHIIIEAGTPLIKKFGLEVISKIREVRPDAFIVADLKT-LDTGNLE--A 243 (391)
T ss_pred cccceEEEecCCCC---HHHHHHHHHhcccccceEEEECHHHHHHhCHHHHHHHHHhCCCCeEEEEecc-cChhhHH--H
Confidence 46677776653322 22223444444433222 223321 1223556666643 356677764 4666543 6
Q ss_pred HHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCCccHHHHHHHHH
Q 015722 177 KRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQT 256 (402)
Q Consensus 177 ~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~ 256 (402)
+.+.++|++.+.++...+. ....+.++.+++
T Consensus 244 ~~~a~aGAD~vTVH~ea~~-------------------------------------------------~ti~~ai~~akk 274 (391)
T PRK13307 244 RMAADATADAVVISGLAPI-------------------------------------------------STIEKAIHEAQK 274 (391)
T ss_pred HHHHhcCCCEEEEeccCCH-------------------------------------------------HHHHHHHHHHHH
Confidence 7778899999877642210 001133555555
Q ss_pred ccCccEEEEec--cCHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHH
Q 015722 257 ITSLPILVKGV--LTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALA 334 (402)
Q Consensus 257 ~~~~Pv~vK~~--~~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~ 334 (402)
. ++-+.+-.+ .++.+.......++|.|.+. -+....+..+.++.+.++++. ..+++|.++|||. .+++.+++.
T Consensus 275 ~-GikvgVD~lnp~tp~e~i~~l~~~vD~Vllh--t~vdp~~~~~~~~kI~~ikk~-~~~~~I~VdGGI~-~eti~~l~~ 349 (391)
T PRK13307 275 T-GIYSILDMLNVEDPVKLLESLKVKPDVVELH--RGIDEEGTEHAWGNIKEIKKA-GGKILVAVAGGVR-VENVEEALK 349 (391)
T ss_pred c-CCEEEEEEcCCCCHHHHHHHhhCCCCEEEEc--cccCCCcccchHHHHHHHHHh-CCCCcEEEECCcC-HHHHHHHHH
Confidence 3 444444222 24433333337899999884 221111224566777777765 3478999999999 888999999
Q ss_pred cCcCEEEEchHHH
Q 015722 335 LGASGVFVGRPVP 347 (402)
Q Consensus 335 lGAd~V~iGr~~l 347 (402)
+|||.+.+||.+.
T Consensus 350 aGADivVVGsaIf 362 (391)
T PRK13307 350 AGADILVVGRAIT 362 (391)
T ss_pred cCCCEEEEeHHHh
Confidence 9999999999854
No 231
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=97.28 E-value=0.0017 Score=60.88 Aligned_cols=76 Identities=22% Similarity=0.225 Sum_probs=60.8
Q ss_pred HHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHHH
Q 015722 270 AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 348 (402)
Q Consensus 270 ~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~ 348 (402)
.+.|++-.+.|||-++.-.-.. ..++....++.+.++++.+ -||+-+-|||++.+|+.+.|.+|||-|.|.++-+.
T Consensus 33 VelA~~Y~e~GADElvFlDItA-s~~gr~~~~~vv~r~A~~v--fiPltVGGGI~s~eD~~~ll~aGADKVSINsaAv~ 108 (256)
T COG0107 33 VELAKRYNEEGADELVFLDITA-SSEGRETMLDVVERVAEQV--FIPLTVGGGIRSVEDARKLLRAGADKVSINSAAVK 108 (256)
T ss_pred HHHHHHHHHcCCCeEEEEeccc-ccccchhHHHHHHHHHhhc--eeeeEecCCcCCHHHHHHHHHcCCCeeeeChhHhc
Confidence 4678888999999998633211 1122345678888888877 79999999999999999999999999999998664
No 232
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.27 E-value=0.0029 Score=61.05 Aligned_cols=76 Identities=14% Similarity=0.163 Sum_probs=61.2
Q ss_pred HHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHHH
Q 015722 270 AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 348 (402)
Q Consensus 270 ~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~ 348 (402)
.+.|+...+.|++.|.+..-.+. .....+..+.+.++.+.+ .+||+++|||++.+|+.+++.+||+.|.+|+..+.
T Consensus 33 ~~~a~~~~~~g~~~l~i~Dl~~~-~~~~~~n~~~i~~i~~~~--~~pv~~gGGi~s~~d~~~l~~~G~~~vvigs~~~~ 108 (258)
T PRK01033 33 INAVRIFNEKEVDELIVLDIDAS-KRGSEPNYELIENLASEC--FMPLCYGGGIKTLEQAKKIFSLGVEKVSINTAALE 108 (258)
T ss_pred HHHHHHHHHcCCCEEEEEECCCC-cCCCcccHHHHHHHHHhC--CCCEEECCCCCCHHHHHHHHHCCCCEEEEChHHhc
Confidence 35578888999999998754221 112356788899998876 79999999999999999999999999999997653
No 233
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=97.26 E-value=0.0023 Score=61.40 Aligned_cols=99 Identities=19% Similarity=0.197 Sum_probs=68.9
Q ss_pred cHHHHHHHHHccCccEEEEeccCHHHHHHHHHhCCcEEEEecC-------------------cccC----C------C--
Q 015722 247 NWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNH-------------------GARQ----L------D-- 295 (402)
Q Consensus 247 ~~~~i~~lr~~~~~Pv~vK~~~~~~da~~a~~aGad~I~vsn~-------------------gg~~----~------d-- 295 (402)
..+.++.+.+.+++|+.+.|....++++.+.++||+.++++.. |.-. + +
T Consensus 64 n~~~i~~i~~~~~~~v~vGGGIr~e~v~~~l~aGa~rVvIGS~av~~~~i~~~~~~~i~~~fG~~~IvvsiD~k~~~~g~ 143 (253)
T TIGR02129 64 NDDAAKEALHAYPGGLQVGGGINDTNAQEWLDEGASHVIVTSWLFTKGKFDLKRLKEIVSLVGKDRLIVDLSCRKTQDGR 143 (253)
T ss_pred cHHHHHHHHHhCCCCEEEeCCcCHHHHHHHHHcCCCEEEECcHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEEcCCCc
Confidence 4577888888888999998765559999999999999998630 1100 0 0
Q ss_pred -----------CCc------------------------------chHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHH
Q 015722 296 -----------YVP------------------------------ATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALA 334 (402)
Q Consensus 296 -----------~~~------------------------------~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~ 334 (402)
.+. +.++.+.++.+.+ ++|||++|||.+-+|+.+.-.
T Consensus 144 ~~V~~~GW~~~t~~~~~~e~~~~~~~~~~~il~TdI~rDGtl~G~dlel~~~l~~~~--~ipVIASGGv~s~eDi~~l~~ 221 (253)
T TIGR02129 144 WIVAMNKWQTITDLELNAETLEELSKYCDEFLIHAADVEGLCKGIDEELVSKLGEWS--PIPITYAGGAKSIDDLDLVDE 221 (253)
T ss_pred EEEEECCCcccCCCChHHHHHHHHHhhCCEEEEeeecccCccccCCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHH
Confidence 011 1223333333333 799999999999999998855
Q ss_pred c--CcCEEEEchHHH
Q 015722 335 L--GASGVFVGRPVP 347 (402)
Q Consensus 335 l--GAd~V~iGr~~l 347 (402)
+ |...+.+|++++
T Consensus 222 ~~~g~~~aIvG~Alf 236 (253)
T TIGR02129 222 LSKGKVDLTIGSALD 236 (253)
T ss_pred hcCCCCcEEeeehHH
Confidence 5 666688888764
No 234
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=97.23 E-value=0.0018 Score=61.39 Aligned_cols=66 Identities=21% Similarity=0.325 Sum_probs=53.2
Q ss_pred HhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCC-eEEEecCCCCHHHHHHHHHcCcCEEEEchHHHH
Q 015722 278 QYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRV-PVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 348 (402)
Q Consensus 278 ~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i-~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~ 348 (402)
-.|...+.+...++. +.+...+.+.++++.+ ++ ||++.|||++.+++.+++..|||+|.+|+.+..
T Consensus 152 ~~g~~~vYle~gs~~---g~~~~~e~I~~v~~~~--~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGSai~~ 218 (232)
T PRK04169 152 YLGMPIVYLEYGGGA---GDPVPPEMVKAVKKAL--DITPLIYGGGIRSPEQARELMAAGADTIVVGNIIEE 218 (232)
T ss_pred HcCCCeEEEECCCCC---CCCCCHHHHHHHHHhc--CCCcEEEECCCCCHHHHHHHHHhCCCEEEEChHHhh
Confidence 447776766533222 4566788899998876 56 999999999999999999999999999999875
No 235
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.21 E-value=0.0037 Score=61.08 Aligned_cols=87 Identities=20% Similarity=0.177 Sum_probs=70.1
Q ss_pred HHHHHHHHccC--ccEEEEeccCHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCH
Q 015722 249 KDVKWLQTITS--LPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRG 326 (402)
Q Consensus 249 ~~i~~lr~~~~--~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g 326 (402)
+.++.+|+..+ .+|.| .+.+.++++.+.++|+|.|.+.|- +.+.+.++++.++.++.+.++|||. .
T Consensus 185 ~av~~~r~~~~~~~kIeV-Ev~tleea~~a~~agaDiImLDnm----------spe~l~~av~~~~~~~~leaSGGI~-~ 252 (290)
T PRK06559 185 KAIAQARAYAPFVKMVEV-EVESLAAAEEAAAAGADIIMLDNM----------SLEQIEQAITLIAGRSRIECSGNID-M 252 (290)
T ss_pred HHHHHHHHhCCCCCeEEE-ECCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhcCceEEEEECCCC-H
Confidence 45888888764 33433 468899999999999999999873 3456666666666689999999997 8
Q ss_pred HHHHHHHHcCcCEEEEchHHH
Q 015722 327 TDVFKALALGASGVFVGRPVP 347 (402)
Q Consensus 327 ~dv~kal~lGAd~V~iGr~~l 347 (402)
+.+.++..+|+|.+.+|.+..
T Consensus 253 ~ni~~yA~tGVD~Is~galth 273 (290)
T PRK06559 253 TTISRFRGLAIDYVSSGSLTH 273 (290)
T ss_pred HHHHHHHhcCCCEEEeCcccc
Confidence 999999999999999999765
No 236
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=97.20 E-value=0.053 Score=51.44 Aligned_cols=120 Identities=21% Similarity=0.231 Sum_probs=74.3
Q ss_pred ccHHHHHHHHHccCccEEEEe-ccCHHH-HHHHHHhCCcEEEEecC----------------cc---------cC-----
Q 015722 246 LNWKDVKWLQTITSLPILVKG-VLTAED-ASLAIQYGAAGIIVSNH----------------GA---------RQ----- 293 (402)
Q Consensus 246 ~~~~~i~~lr~~~~~Pv~vK~-~~~~~d-a~~a~~aGad~I~vsn~----------------gg---------~~----- 293 (402)
+..+.++++|+.++.|+=+-. +.+++. ++...++|+|.|++.-- |- +.
T Consensus 46 fg~~~i~~ir~~t~~~~DvHLMv~~P~~~i~~~~~aGad~it~H~Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T~~~~l~ 125 (229)
T PRK09722 46 LSPFFVSQVKKLASKPLDVHLMVTDPQDYIDQLADAGADFITLHPETINGQAFRLIDEIRRAGMKVGLVLNPETPVESIK 125 (229)
T ss_pred cCHHHHHHHHhcCCCCeEEEEEecCHHHHHHHHHHcCCCEEEECccCCcchHHHHHHHHHHcCCCEEEEeCCCCCHHHHH
Confidence 344678888887777766654 345554 66777888888887411 10 00
Q ss_pred -----CC-----------CC----cchHHHHHHHHHHhc---CCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHHHhh
Q 015722 294 -----LD-----------YV----PATVMALEEVVQAAK---GRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSL 350 (402)
Q Consensus 294 -----~d-----------~~----~~~~~~l~~i~~~~~---~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~~~ 350 (402)
.| +| +..++-+.++++... .++.|-+||||. .+-+.++.++|||.+.+|+..+|+.
T Consensus 126 ~~l~~vD~VLvMsV~PGf~GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~~i~~~~~aGad~~V~Gss~iF~~ 204 (229)
T PRK09722 126 YYIHLLDKITVMTVDPGFAGQPFIPEMLDKIAELKALRERNGLEYLIEVDGSCN-QKTYEKLMEAGADVFIVGTSGLFNL 204 (229)
T ss_pred HHHHhcCEEEEEEEcCCCcchhccHHHHHHHHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHHHcCCCEEEEChHHHcCC
Confidence 01 12 223344444444332 247799999999 6788889999999999998766631
Q ss_pred hcCChHHHHHHHHHHHHHHH
Q 015722 351 AVDGEAGVRKVLQMLRDEFE 370 (402)
Q Consensus 351 ~~~G~~gv~~~i~~l~~el~ 370 (402)
.+...+.++.+++.++
T Consensus 205 ----~~d~~~~i~~l~~~~~ 220 (229)
T PRK09722 205 ----DEDIDEAWDIMTAQIE 220 (229)
T ss_pred ----CCCHHHHHHHHHHHHH
Confidence 1123445666655443
No 237
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.20 E-value=0.0041 Score=60.64 Aligned_cols=87 Identities=20% Similarity=0.188 Sum_probs=70.7
Q ss_pred HHHHHHHHccC--ccEEEEeccCHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCH
Q 015722 249 KDVKWLQTITS--LPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRG 326 (402)
Q Consensus 249 ~~i~~lr~~~~--~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g 326 (402)
+.++.+|+..+ .++. -.+.+.++++.+.++|+|.|.+.|- +.+.+.++.+.++.+.++-++|||. .
T Consensus 182 ~ai~~~r~~~~~~~kIe-VEv~tleea~ea~~~gaDiI~LDn~----------s~e~l~~av~~~~~~~~leaSGGI~-~ 249 (281)
T PRK06106 182 EAIRRARAGVGHLVKIE-VEVDTLDQLEEALELGVDAVLLDNM----------TPDTLREAVAIVAGRAITEASGRIT-P 249 (281)
T ss_pred HHHHHHHHhCCCCCcEE-EEeCCHHHHHHHHHcCCCEEEeCCC----------CHHHHHHHHHHhCCCceEEEECCCC-H
Confidence 55888888764 3443 3567999999999999999999873 3366777776666688999999997 8
Q ss_pred HHHHHHHHcCcCEEEEchHHH
Q 015722 327 TDVFKALALGASGVFVGRPVP 347 (402)
Q Consensus 327 ~dv~kal~lGAd~V~iGr~~l 347 (402)
+.+.++..+|.|.+.+|.+..
T Consensus 250 ~ni~~yA~tGVD~Is~Galth 270 (281)
T PRK06106 250 ETAPAIAASGVDLISVGWLTH 270 (281)
T ss_pred HHHHHHHhcCCCEEEeChhhc
Confidence 999999999999999999765
No 238
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=97.19 E-value=0.0039 Score=57.02 Aligned_cols=89 Identities=17% Similarity=0.170 Sum_probs=59.6
Q ss_pred cHHHHHHHHHccCccEEE--Ee---------ccCHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCC
Q 015722 247 NWKDVKWLQTITSLPILV--KG---------VLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRV 315 (402)
Q Consensus 247 ~~~~i~~lr~~~~~Pv~v--K~---------~~~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i 315 (402)
..++|+.+|+.+++|||- |- ..|.+++..+.++|+|-|-+..+..... .+..+.+.+|++.. .
T Consensus 20 ~~~dI~aik~~v~lPIIGi~K~~y~~~~V~ITPT~~ev~~l~~aGadIIAlDaT~R~Rp---~~l~~li~~i~~~~---~ 93 (192)
T PF04131_consen 20 GVEDIRAIKKAVDLPIIGIIKRDYPDSDVYITPTLKEVDALAEAGADIIALDATDRPRP---ETLEELIREIKEKY---Q 93 (192)
T ss_dssp SHHHHHHHHTTB-S-EEEE-B-SBTTSS--BS-SHHHHHHHHHCT-SEEEEE-SSSS-S---S-HHHHHHHHHHCT---S
T ss_pred CHHHHHHHHHhcCCCEEEEEeccCCCCCeEECCCHHHHHHHHHcCCCEEEEecCCCCCC---cCHHHHHHHHHHhC---c
Confidence 458899999999999862 32 1567999999999999999987543211 33345666666533 5
Q ss_pred eEEEecCCCCHHHHHHHHHcCcCEEEEc
Q 015722 316 PVFLDGGVRRGTDVFKALALGASGVFVG 343 (402)
Q Consensus 316 ~via~GGI~~g~dv~kal~lGAd~V~iG 343 (402)
.+++| |.|-+|...|..+|+|.|.--
T Consensus 94 l~MAD--ist~ee~~~A~~~G~D~I~TT 119 (192)
T PF04131_consen 94 LVMAD--ISTLEEAINAAELGFDIIGTT 119 (192)
T ss_dssp EEEEE---SSHHHHHHHHHTT-SEEE-T
T ss_pred EEeee--cCCHHHHHHHHHcCCCEEEcc
Confidence 66665 799999999999999998654
No 239
>PRK12376 putative translaldolase; Provisional
Probab=97.16 E-value=0.13 Score=48.94 Aligned_cols=100 Identities=19% Similarity=0.138 Sum_probs=73.6
Q ss_pred HHHHHHHHHccCccEEEEeccCHHHHHHHHHh----CCcEEEEecCcccCCCCCcchHHHHHHHHHHhc--CCCeEEEec
Q 015722 248 WKDVKWLQTITSLPILVKGVLTAEDASLAIQY----GAAGIIVSNHGARQLDYVPATVMALEEVVQAAK--GRVPVFLDG 321 (402)
Q Consensus 248 ~~~i~~lr~~~~~Pv~vK~~~~~~da~~a~~a----Gad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~--~~i~via~G 321 (402)
.+.++.+.+. ++|+-+=.+.++..+..+.++ |++.|.. .-||-.|.|...+..+.++.+.+. .+..|++.+
T Consensus 102 l~Ai~~L~~~-GI~vn~T~vfs~~Qa~~a~~A~ag~ga~yisp--fvgR~dd~g~D~~~~i~~i~~i~~~~~~tkILaAS 178 (236)
T PRK12376 102 IPLIKKLSAD-GVKLNVTAIFTIEQVKEVVDALTPGVPAIVSV--FAGRIADTGVDPVPLMKEALAICHSKPGVELLWAS 178 (236)
T ss_pred HHHHHHHHHC-CCeEEEeeecCHHHHHHHHHHhcCCCCeEEEE--ecchhhhcCCCcHHHHHHHHHHHHhCCCcEEEEEe
Confidence 3556666554 788888888999998765555 5888776 445544556556666666665542 357788866
Q ss_pred CCCCHHHHHHHHHcCcCEEEEchHHHHhhh
Q 015722 322 GVRRGTDVFKALALGASGVFVGRPVPFSLA 351 (402)
Q Consensus 322 GI~~g~dv~kal~lGAd~V~iGr~~l~~~~ 351 (402)
||+..++.+++.+|||.|-+.-.++..+.
T Consensus 179 -iR~~~~v~~a~~~Gad~vTvp~~v~~~l~ 207 (236)
T PRK12376 179 -PREVYNIIQADQLGCDIITVTPDVLKKLP 207 (236)
T ss_pred -cCCHHHHHHHHHcCCCEEEcCHHHHHHHH
Confidence 99999999999999999999987776654
No 240
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=97.15 E-value=0.0029 Score=58.87 Aligned_cols=81 Identities=22% Similarity=0.273 Sum_probs=60.6
Q ss_pred cHHHHHHHHHccC-ccEEEEeccCHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCC
Q 015722 247 NWKDVKWLQTITS-LPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRR 325 (402)
Q Consensus 247 ~~~~i~~lr~~~~-~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~ 325 (402)
..+.++++++..+ +.|.+..+++.++++.+.++|+++|+ |-+ ...+.+..+++ . ++|++. |+.|
T Consensus 46 a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~Fiv-sP~---------~~~~v~~~~~~-~--~i~~iP--G~~T 110 (204)
T TIGR01182 46 ALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFIV-SPG---------LTPELAKHAQD-H--GIPIIP--GVAT 110 (204)
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEE-CCC---------CCHHHHHHHHH-c--CCcEEC--CCCC
Confidence 4467899988773 56666778999999999999999984 321 12233333332 2 677777 9999
Q ss_pred HHHHHHHHHcCcCEEEE
Q 015722 326 GTDVFKALALGASGVFV 342 (402)
Q Consensus 326 g~dv~kal~lGAd~V~i 342 (402)
+.++.+|+.+||+.|=+
T Consensus 111 ptEi~~A~~~Ga~~vKl 127 (204)
T TIGR01182 111 PSEIMLALELGITALKL 127 (204)
T ss_pred HHHHHHHHHCCCCEEEE
Confidence 99999999999999854
No 241
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=97.15 E-value=0.0023 Score=60.56 Aligned_cols=75 Identities=21% Similarity=0.287 Sum_probs=57.6
Q ss_pred HHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHHH
Q 015722 271 EDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 348 (402)
Q Consensus 271 ~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~ 348 (402)
+.|+...+.|++.+.+..--+ ...+.+...+.+.++.+.+ .+||.+.||||+.+|+.+++.+||+-|.+|+..+.
T Consensus 33 ~~a~~~~~~g~~~l~ivDLda-a~~g~~~n~~~i~~i~~~~--~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~~~~ 107 (229)
T PF00977_consen 33 EVAKAFNEQGADELHIVDLDA-AKEGRGSNLELIKEIAKET--GIPIQVGGGIRSIEDAERLLDAGADRVVIGTEALE 107 (229)
T ss_dssp HHHHHHHHTT-SEEEEEEHHH-HCCTHHHHHHHHHHHHHHS--SSEEEEESSE-SHHHHHHHHHTT-SEEEESHHHHH
T ss_pred HHHHHHHHcCCCEEEEEEccC-cccCchhHHHHHHHHHhcC--CccEEEeCccCcHHHHHHHHHhCCCEEEeChHHhh
Confidence 557777789999998854211 1123456788899998887 59999999999999999999999999999997664
No 242
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=97.14 E-value=0.0023 Score=60.78 Aligned_cols=74 Identities=24% Similarity=0.255 Sum_probs=60.8
Q ss_pred HHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHH
Q 015722 270 AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVP 347 (402)
Q Consensus 270 ~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l 347 (402)
.+.|+...+.|+|.+.+..--+. .+.....+.+.++.+.+ .+|+.+.||||+.+|+.+++.+||+-|.+|+..+
T Consensus 38 ~~~a~~~~~~g~~~l~i~DLd~~--~~~~~n~~~i~~i~~~~--~~~v~vgGGir~~edv~~~l~~Ga~~viigt~~~ 111 (233)
T cd04723 38 LDVARAYKELGFRGLYIADLDAI--MGRGDNDEAIRELAAAW--PLGLWVDGGIRSLENAQEWLKRGASRVIVGTETL 111 (233)
T ss_pred HHHHHHHHHCCCCEEEEEeCccc--cCCCccHHHHHHHHHhC--CCCEEEecCcCCHHHHHHHHHcCCCeEEEcceec
Confidence 45678888999999998653221 14456788899988876 6899999999999999999999999999999654
No 243
>PRK08185 hypothetical protein; Provisional
Probab=97.13 E-value=0.19 Score=49.22 Aligned_cols=109 Identities=16% Similarity=0.260 Sum_probs=75.5
Q ss_pred cCHHHHHHHHHh-CCcEEEEec---CcccCCCCCc--chHHHHHHHHHHhcCCCeEEEecCCCCHH-HHHHHHHcCcCEE
Q 015722 268 LTAEDASLAIQY-GAAGIIVSN---HGARQLDYVP--ATVMALEEVVQAAKGRVPVFLDGGVRRGT-DVFKALALGASGV 340 (402)
Q Consensus 268 ~~~~da~~a~~a-Gad~I~vsn---~gg~~~d~~~--~~~~~l~~i~~~~~~~i~via~GGI~~g~-dv~kal~lGAd~V 340 (402)
.++++|+...+. |+|.+-++. ||-+. ..+. -.++.|.+|++.+ ++|+++=||+..++ |+.|++.+|..=|
T Consensus 149 t~peea~~f~~~TgvD~LAvaiGt~HG~y~-~~~kp~L~~e~l~~I~~~~--~iPLVlHGgsg~~~e~~~~ai~~GI~Ki 225 (283)
T PRK08185 149 TDPEQAEDFVSRTGVDTLAVAIGTAHGIYP-KDKKPELQMDLLKEINERV--DIPLVLHGGSANPDAEIAESVQLGVGKI 225 (283)
T ss_pred CCHHHHHHHHHhhCCCEEEeccCcccCCcC-CCCCCCcCHHHHHHHHHhh--CCCEEEECCCCCCHHHHHHHHHCCCeEE
Confidence 578999888876 999999963 44322 1112 2588999999887 79999999997665 5567888999999
Q ss_pred EEchHHHHhhhc-------CC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q 015722 341 FVGRPVPFSLAV-------DG------EAGVRKVLQMLRDEFELTMALSGCR 379 (402)
Q Consensus 341 ~iGr~~l~~~~~-------~G------~~gv~~~i~~l~~el~~~m~~~G~~ 379 (402)
-|+|-+..+... .. ..-.....+.+.+.++..|..+|..
T Consensus 226 Ni~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~i~~~gs~ 277 (283)
T PRK08185 226 NISSDMKYAFFKKVREILSDNPSLYEPNQIYPSAIEAAKEVVRHKMDLFNST 277 (283)
T ss_pred EeChHHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999976543210 01 1123334455677777778887754
No 244
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=97.13 E-value=0.0041 Score=61.00 Aligned_cols=88 Identities=20% Similarity=0.232 Sum_probs=69.9
Q ss_pred HHHHHHHHccC-ccEEEEeccCHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHH
Q 015722 249 KDVKWLQTITS-LPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGT 327 (402)
Q Consensus 249 ~~i~~lr~~~~-~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~ 327 (402)
+.++.+|+..+ .|+. -.+.+.++++.+.++|+|.|.+.|- +.+.+.++++.++.++.+.++|||. .+
T Consensus 197 ~av~~~r~~~~~~kIe-VEv~sleea~ea~~~gaDiI~LDn~----------s~e~~~~av~~~~~~~~ieaSGGI~-~~ 264 (296)
T PRK09016 197 QAVEKAFWLHPDVPVE-VEVENLDELDQALKAGADIIMLDNF----------TTEQMREAVKRTNGRALLEVSGNVT-LE 264 (296)
T ss_pred HHHHHHHHhCCCCCEE-EEeCCHHHHHHHHHcCCCEEEeCCC----------ChHHHHHHHHhhcCCeEEEEECCCC-HH
Confidence 45777777653 4543 3567899999999999999999873 2366677766666689999999997 88
Q ss_pred HHHHHHHcCcCEEEEchHHHH
Q 015722 328 DVFKALALGASGVFVGRPVPF 348 (402)
Q Consensus 328 dv~kal~lGAd~V~iGr~~l~ 348 (402)
.+.++..+|+|.+.+|.+...
T Consensus 265 ni~~yA~tGVD~Is~galths 285 (296)
T PRK09016 265 TLREFAETGVDFISVGALTKH 285 (296)
T ss_pred HHHHHHhcCCCEEEeCccccC
Confidence 999999999999999997543
No 245
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=97.09 E-value=0.073 Score=52.03 Aligned_cols=107 Identities=14% Similarity=0.198 Sum_probs=74.8
Q ss_pred cCHHHHHH-HHHhCCcEEEEec---CcccCCCCCcc-hHHHHHHHHHHhcCCCeEEEecCCCCH-HHHHHHHHcCcCEEE
Q 015722 268 LTAEDASL-AIQYGAAGIIVSN---HGARQLDYVPA-TVMALEEVVQAAKGRVPVFLDGGVRRG-TDVFKALALGASGVF 341 (402)
Q Consensus 268 ~~~~da~~-a~~aGad~I~vsn---~gg~~~d~~~~-~~~~l~~i~~~~~~~i~via~GGI~~g-~dv~kal~lGAd~V~ 341 (402)
.++++++. +.+.|+|.+-++. ||-+ .+|. .++.|.+|.+.+ ++|+..-||=..+ +|+.+++.+|..-|-
T Consensus 153 T~pe~a~~Fv~~TgvD~LAvaiGt~HG~Y---~~p~l~~~~l~~I~~~~--~vPLVlHGgSG~~~e~~~~ai~~Gi~KiN 227 (283)
T PRK07998 153 TEPEKVKDFVERTGCDMLAVSIGNVHGLE---DIPRIDIPLLKRIAEVS--PVPLVIHGGSGIPPEILRSFVNYKVAKVN 227 (283)
T ss_pred CCHHHHHHHHHHhCcCeeehhccccccCC---CCCCcCHHHHHHHHhhC--CCCEEEeCCCCCCHHHHHHHHHcCCcEEE
Confidence 57788765 4579999999874 5543 2332 478999999887 7999999987776 667789999999999
Q ss_pred EchHHHHhhhc-------CC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q 015722 342 VGRPVPFSLAV-------DG------EAGVRKVLQMLRDEFELTMALSGCR 379 (402)
Q Consensus 342 iGr~~l~~~~~-------~G------~~gv~~~i~~l~~el~~~m~~~G~~ 379 (402)
++|-+..+... .. ..-.....+.+++.++..|..+|..
T Consensus 228 i~Tel~~a~~~~~~~~l~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 278 (283)
T PRK07998 228 IASDLRKAFITTVGKAYVNNHNEANLARVMAKAKQAVEEDVYSKIKMMNSN 278 (283)
T ss_pred ECHHHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99976543210 00 0113334456677777788887754
No 246
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=97.07 E-value=0.049 Score=52.80 Aligned_cols=86 Identities=17% Similarity=0.137 Sum_probs=64.4
Q ss_pred cHHHHHHHHHccCccEEEEecc-CHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCC
Q 015722 247 NWKDVKWLQTITSLPILVKGVL-TAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRR 325 (402)
Q Consensus 247 ~~~~i~~lr~~~~~Pv~vK~~~-~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~ 325 (402)
+.++|+++++.+++||+-+.-. ...+++.+.++|+|.|.-+..- .|.-+.+..+++.. ++|+++ |++|
T Consensus 53 ~~~~I~~Ik~~V~iPVIGi~K~~~~~Ea~~L~eaGvDiIDaT~r~-------rP~~~~~~~iK~~~--~~l~MA--D~st 121 (283)
T cd04727 53 DPKMIKEIMDAVSIPVMAKVRIGHFVEAQILEALGVDMIDESEVL-------TPADEEHHIDKHKF--KVPFVC--GARN 121 (283)
T ss_pred CHHHHHHHHHhCCCCeEEeeehhHHHHHHHHHHcCCCEEeccCCC-------CcHHHHHHHHHHHc--CCcEEc--cCCC
Confidence 4588999999999999976543 3789999999999999532210 12344566666554 566665 6899
Q ss_pred HHHHHHHHHcCcCEEEEc
Q 015722 326 GTDVFKALALGASGVFVG 343 (402)
Q Consensus 326 g~dv~kal~lGAd~V~iG 343 (402)
-++++.+..+|||.|..-
T Consensus 122 leEal~a~~~Gad~I~TT 139 (283)
T cd04727 122 LGEALRRISEGAAMIRTK 139 (283)
T ss_pred HHHHHHHHHCCCCEEEec
Confidence 999999999999987543
No 247
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.06 E-value=0.0051 Score=60.20 Aligned_cols=87 Identities=20% Similarity=0.174 Sum_probs=67.1
Q ss_pred HHHHHHHHccC-ccEEEEeccCHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHH---hcCCCeEEEecCCC
Q 015722 249 KDVKWLQTITS-LPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQA---AKGRVPVFLDGGVR 324 (402)
Q Consensus 249 ~~i~~lr~~~~-~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~---~~~~i~via~GGI~ 324 (402)
+.++++|+..+ .|+. =.+.+.+++..+.++|+|.|.+.|- +.+.+.++.+. ..+++.+.++|||.
T Consensus 188 ~ai~~~r~~~~~~kIe-VEv~tl~ea~eal~~gaDiI~LDnm----------~~e~vk~av~~~~~~~~~v~ieaSGGI~ 256 (289)
T PRK07896 188 AALRAVRAAAPDLPCE-VEVDSLEQLDEVLAEGAELVLLDNF----------PVWQTQEAVQRRDARAPTVLLESSGGLT 256 (289)
T ss_pred HHHHHHHHhCCCCCEE-EEcCCHHHHHHHHHcCCCEEEeCCC----------CHHHHHHHHHHHhccCCCEEEEEECCCC
Confidence 55788887653 4543 3568999999999999999999873 13444444433 34578999999997
Q ss_pred CHHHHHHHHHcCcCEEEEchHHH
Q 015722 325 RGTDVFKALALGASGVFVGRPVP 347 (402)
Q Consensus 325 ~g~dv~kal~lGAd~V~iGr~~l 347 (402)
.+.+.++..+|+|.+.+|.+..
T Consensus 257 -~~ni~~yA~tGvD~Is~galt~ 278 (289)
T PRK07896 257 -LDTAAAYAETGVDYLAVGALTH 278 (289)
T ss_pred -HHHHHHHHhcCCCEEEeChhhc
Confidence 8999999999999999999765
No 248
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=97.06 E-value=0.093 Score=53.12 Aligned_cols=206 Identities=21% Similarity=0.235 Sum_probs=112.7
Q ss_pred CCccceeecCccc--CCc-eeecccccccccCChhhHHHHHHHHHcCCeEEecCCccCCHHHHhhcCCCceEEEEeecCC
Q 015722 92 KIDMTTTVLGFNI--SMP-IMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKH 168 (402)
Q Consensus 92 ~~d~st~i~G~~l--~~P-i~iAPm~~~~~~~~~ge~ala~aa~~~G~~~~vs~~~~~s~eei~~~~~~~~~~QLy~~~d 168 (402)
.-|+.+.+.|..+ ..| ++++|.... ..+.-+.+|+.+++.|+.+.-... .. -+. .|..|| .-.
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~iaGpc~iE---~~~~~~~~A~~lk~~g~~~~r~~~--~k----pRt--sp~~f~---g~~ 167 (360)
T PRK12595 102 PEDTIVDVKGEVIGDGNQSFIFGPCSVE---SYEQVEAVAKALKAKGLKLLRGGA--FK----PRT--SPYDFQ---GLG 167 (360)
T ss_pred CCCCEEEECCEEecCCCeeeEEeccccc---CHHHHHHHHHHHHHcCCcEEEccc--cC----CCC--CCcccc---CCC
Confidence 3345555544333 234 455664332 334456889999999988776321 00 011 233455 334
Q ss_pred hhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCCccH
Q 015722 169 RNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNW 248 (402)
Q Consensus 169 ~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 248 (402)
.+....+.+.+++.|...+. ++-.+ +.-+....+ ++- + .+.+ .-....
T Consensus 168 ~e~l~~L~~~~~~~Gl~~~t-~v~d~----~~~~~l~~~-vd~-l-----------------------kI~s--~~~~n~ 215 (360)
T PRK12595 168 VEGLKILKQVADEYGLAVIS-EIVNP----ADVEVALDY-VDV-I-----------------------QIGA--RNMQNF 215 (360)
T ss_pred HHHHHHHHHHHHHcCCCEEE-eeCCH----HHHHHHHHh-CCe-E-----------------------EECc--ccccCH
Confidence 46666777778888877653 22111 111111111 110 0 0000 001134
Q ss_pred HHHHHHHHccCccEEEEec--cCHHHH----HHHHHhCCcEEEEecCcccCCC---CCcchHHHHHHHHHHhcCCCeEEE
Q 015722 249 KDVKWLQTITSLPILVKGV--LTAEDA----SLAIQYGAAGIIVSNHGARQLD---YVPATVMALEEVVQAAKGRVPVFL 319 (402)
Q Consensus 249 ~~i~~lr~~~~~Pv~vK~~--~~~~da----~~a~~aGad~I~vsn~gg~~~d---~~~~~~~~l~~i~~~~~~~i~via 319 (402)
+.++.+.+ ++.||++|-. .+.++. +...+.|..-|++--+|-+... .....+..++.+++.. .+||+.
T Consensus 216 ~LL~~~a~-~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~erg~s~yp~~~~~~ldl~~i~~lk~~~--~~PV~~ 292 (360)
T PRK12595 216 ELLKAAGR-VNKPVLLKRGLSATIEEFIYAAEYIMSQGNGQIILCERGIRTYEKATRNTLDISAVPILKQET--HLPVMV 292 (360)
T ss_pred HHHHHHHc-cCCcEEEeCCCCCCHHHHHHHHHHHHHCCCCCEEEECCccCCCCCCCCCCcCHHHHHHHHHHh--CCCEEE
Confidence 66777765 5899999965 477764 4455778877776533433221 1123577788887765 689999
Q ss_pred ecCCCCH----H--HHHHHHHcCcCEEEEchHH
Q 015722 320 DGGVRRG----T--DVFKALALGASGVFVGRPV 346 (402)
Q Consensus 320 ~GGI~~g----~--dv~kal~lGAd~V~iGr~~ 346 (402)
|.+=..| . -...|+++|||+++|-+-+
T Consensus 293 d~~Hs~G~r~~~~~~a~aAva~GAdg~~iE~H~ 325 (360)
T PRK12595 293 DVTHSTGRRDLLLPTAKAALAIGADGVMAEVHP 325 (360)
T ss_pred eCCCCCcchhhHHHHHHHHHHcCCCeEEEEecC
Confidence 6442222 2 4456788999999998855
No 249
>PRK08005 epimerase; Validated
Probab=97.05 E-value=0.05 Score=50.95 Aligned_cols=136 Identities=16% Similarity=0.183 Sum_probs=85.9
Q ss_pred cCChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCC
Q 015722 166 TKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRS 245 (402)
Q Consensus 166 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 245 (402)
..|.....+.+++.+++|++.+ ++|.-- ..| +| +-.
T Consensus 9 ~ad~~~l~~el~~l~~~g~d~l--HiDvMD---------G~F-VP--------------------------------N~t 44 (210)
T PRK08005 9 SADPLRYAEALTALHDAPLGSL--HLDIED---------TSF-IN--------------------------------NIT 44 (210)
T ss_pred hCCHHHHHHHHHHHHHCCCCEE--EEeccC---------CCc-CC--------------------------------ccc
Confidence 4577788899999999999876 445210 001 11 112
Q ss_pred ccHHHHHHHHHccCccEEEEe-ccCHHH-HHHHHHhCCcEEEEecC---------------cc---------cC------
Q 015722 246 LNWKDVKWLQTITSLPILVKG-VLTAED-ASLAIQYGAAGIIVSNH---------------GA---------RQ------ 293 (402)
Q Consensus 246 ~~~~~i~~lr~~~~~Pv~vK~-~~~~~d-a~~a~~aGad~I~vsn~---------------gg---------~~------ 293 (402)
+..+.++++|+.++.|+=+-. +.+++. ++...++|+|.|++.-- |. +.
T Consensus 45 fG~~~i~~l~~~t~~~~DvHLMv~~P~~~i~~~~~~gad~It~H~Ea~~~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~ 124 (210)
T PRK08005 45 FGMKTIQAVAQQTRHPLSFHLMVSSPQRWLPWLAAIRPGWIFIHAESVQNPSEILADIRAIGAKAGLALNPATPLLPYRY 124 (210)
T ss_pred cCHHHHHHHHhcCCCCeEEEeccCCHHHHHHHHHHhCCCEEEEcccCccCHHHHHHHHHHcCCcEEEEECCCCCHHHHHH
Confidence 344678888887777766654 344554 56777888888888411 10 00
Q ss_pred ----CC-----------CC----cchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHH
Q 015722 294 ----LD-----------YV----PATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVP 347 (402)
Q Consensus 294 ----~d-----------~~----~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l 347 (402)
.| +| +..++-+.++++.. .+..|-+||||. .+-+.++.++|||.+.+|+.+.
T Consensus 125 ~l~~vD~VlvMsV~PGf~GQ~f~~~~~~KI~~l~~~~-~~~~I~VDGGI~-~~~i~~l~~aGad~~V~GsaiF 195 (210)
T PRK08005 125 LALQLDALMIMTSEPDGRGQQFIAAMCEKVSQSREHF-PAAECWADGGIT-LRAARLLAAAGAQHLVIGRALF 195 (210)
T ss_pred HHHhcCEEEEEEecCCCccceecHHHHHHHHHHHHhc-ccCCEEEECCCC-HHHHHHHHHCCCCEEEEChHhh
Confidence 01 12 12233344444333 235799999998 7788899999999999999753
No 250
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=97.03 E-value=0.0036 Score=58.37 Aligned_cols=66 Identities=18% Similarity=0.349 Sum_probs=53.3
Q ss_pred HHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEc
Q 015722 273 ASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVG 343 (402)
Q Consensus 273 a~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iG 343 (402)
+..+...|++.|.+-...|. ..+.+.+.+.++++.+ ++|++.-||||+.+++.+++..|||.|.+|
T Consensus 140 a~aa~~~G~~~i~Le~~sGa---~~~v~~e~i~~Vk~~~--~~Pv~vGGGIrs~e~a~~l~~~GAD~VVVG 205 (205)
T TIGR01769 140 CLAAKYFGMKWVYLEAGSGA---SYPVNPETISLVKKAS--GIPLIVGGGIRSPEIAYEIVLAGADAIVTG 205 (205)
T ss_pred HHHHHHcCCCEEEEEcCCCC---CCCCCHHHHHHHHHhh--CCCEEEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence 45667889999988542222 2234578888888887 799999999999999999999999999987
No 251
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=97.01 E-value=0.013 Score=54.76 Aligned_cols=80 Identities=16% Similarity=0.146 Sum_probs=61.0
Q ss_pred ccCHHHHHHHHHhCCcEEEEecCcccC-CC--CCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEc
Q 015722 267 VLTAEDASLAIQYGAAGIIVSNHGARQ-LD--YVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVG 343 (402)
Q Consensus 267 ~~~~~da~~a~~aGad~I~vsn~gg~~-~d--~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iG 343 (402)
+-+.+++..|.+.|+|+|.++---.+. .. ..+..++.+.++.+.. .++||+|-|||. .+++.+.+++||++|.+-
T Consensus 109 ~H~~~e~~~A~~~gaDYi~lgpvf~T~tK~~~~~~~G~~~l~~~~~~~-~~~PV~AiGGI~-~~ni~~l~~~Ga~GiAvi 186 (211)
T PRK03512 109 THDDMEIDVALAARPSYIALGHVFPTQTKQMPSAPQGLAQLARHVERL-ADYPTVAIGGIS-LERAPAVLATGVGSIAVV 186 (211)
T ss_pred CCCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc-CCCCEEEECCCC-HHHHHHHHHcCCCEEEEh
Confidence 467888999999999999997432222 11 1233466677766543 269999999998 999999999999999999
Q ss_pred hHHHH
Q 015722 344 RPVPF 348 (402)
Q Consensus 344 r~~l~ 348 (402)
+.++.
T Consensus 187 sai~~ 191 (211)
T PRK03512 187 SAITQ 191 (211)
T ss_pred hHhhC
Confidence 98764
No 252
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.00 E-value=0.0073 Score=58.86 Aligned_cols=88 Identities=18% Similarity=0.171 Sum_probs=69.9
Q ss_pred HHHHHHHHccC--ccEEEEeccCHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCH
Q 015722 249 KDVKWLQTITS--LPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRG 326 (402)
Q Consensus 249 ~~i~~lr~~~~--~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g 326 (402)
+.++.+|+..+ .+|. =.+.+.++++.+.++|+|.|.+.|- +.+.+.++++.++++..+.++|||. .
T Consensus 181 ~av~~~r~~~~~~~kIe-VEv~slee~~ea~~~gaDiImLDn~----------s~e~l~~av~~~~~~~~leaSGgI~-~ 248 (281)
T PRK06543 181 EALRHVRAQLGHTTHVE-VEVDRLDQIEPVLAAGVDTIMLDNF----------SLDDLREGVELVDGRAIVEASGNVN-L 248 (281)
T ss_pred HHHHHHHHhCCCCCcEE-EEeCCHHHHHHHHhcCCCEEEECCC----------CHHHHHHHHHHhCCCeEEEEECCCC-H
Confidence 45788888764 3343 3568999999999999999999873 3356666666666678899999997 8
Q ss_pred HHHHHHHHcCcCEEEEchHHHH
Q 015722 327 TDVFKALALGASGVFVGRPVPF 348 (402)
Q Consensus 327 ~dv~kal~lGAd~V~iGr~~l~ 348 (402)
+.+.++..+|.|.+.+|.+...
T Consensus 249 ~ni~~yA~tGVD~Is~galths 270 (281)
T PRK06543 249 NTVGAIASTGVDVISVGALTHS 270 (281)
T ss_pred HHHHHHHhcCCCEEEeCccccC
Confidence 9999999999999999996543
No 253
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=96.98 E-value=0.0037 Score=58.79 Aligned_cols=69 Identities=20% Similarity=0.251 Sum_probs=54.9
Q ss_pred HHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHHH
Q 015722 273 ASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 348 (402)
Q Consensus 273 a~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~ 348 (402)
|..+...|...|.+. ..|. ....+.+..+++.+. ++|++..||||+.+++.+++.+|||.|.+|+.+..
T Consensus 141 A~aae~~g~~ivyLe-~SG~-----~~~~e~I~~v~~~~~-~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGsai~~ 209 (219)
T cd02812 141 ALAAEYLGMPIVYLE-YSGA-----YGPPEVVRAVKKVLG-DTPLIVGGGIRSGEQAKEMAEAGADTIVVGNIVEE 209 (219)
T ss_pred HHHHHHcCCeEEEeC-CCCC-----cCCHHHHHHHHHhcC-CCCEEEeCCCCCHHHHHHHHHcCCCEEEECchhhC
Confidence 566778887777776 2221 355677888887653 68999999999999999999999999999998764
No 254
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.97 E-value=0.008 Score=58.85 Aligned_cols=88 Identities=20% Similarity=0.263 Sum_probs=67.8
Q ss_pred HHHHHHHHccC-ccEEEEeccCHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHH
Q 015722 249 KDVKWLQTITS-LPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGT 327 (402)
Q Consensus 249 ~~i~~lr~~~~-~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~ 327 (402)
+.++.+|+... .+|. =.+.+.++++.+.++|+|.|.+.|- +.+.+.++++.+++++.+-++|||. .+
T Consensus 194 ~av~~~r~~~~~~kIe-VEvetleea~eA~~aGaDiImLDnm----------spe~l~~av~~~~~~~~lEaSGGIt-~~ 261 (294)
T PRK06978 194 AALDAAFALNAGVPVQ-IEVETLAQLETALAHGAQSVLLDNF----------TLDMMREAVRVTAGRAVLEVSGGVN-FD 261 (294)
T ss_pred HHHHHHHHhCCCCcEE-EEcCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHhhcCCeEEEEECCCC-HH
Confidence 34677776542 3333 2457899999999999999999873 3356666666666678999999997 88
Q ss_pred HHHHHHHcCcCEEEEchHHHH
Q 015722 328 DVFKALALGASGVFVGRPVPF 348 (402)
Q Consensus 328 dv~kal~lGAd~V~iGr~~l~ 348 (402)
.+.++..+|.|.+.+|.+...
T Consensus 262 ni~~yA~tGVD~IS~galths 282 (294)
T PRK06978 262 TVRAFAETGVDRISIGALTKD 282 (294)
T ss_pred HHHHHHhcCCCEEEeCccccC
Confidence 999999999999999986543
No 255
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.97 E-value=0.008 Score=57.13 Aligned_cols=75 Identities=21% Similarity=0.147 Sum_probs=59.0
Q ss_pred HHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHHH
Q 015722 270 AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 348 (402)
Q Consensus 270 ~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~ 348 (402)
.+.|+...+.|+|.+.+-.-.+.. +.....+.+.++.+.. -.|+...|||||.+|+.+++.+||+-|.+|+..+.
T Consensus 33 ~~~a~~~~~~ga~~lhivDLd~a~--~~~~n~~~i~~i~~~~--~~~v~vGGGIrs~e~~~~~l~~Ga~kvvigt~a~~ 107 (232)
T PRK13586 33 IEIASKLYNEGYTRIHVVDLDAAE--GVGNNEMYIKEISKIG--FDWIQVGGGIRDIEKAKRLLSLDVNALVFSTIVFT 107 (232)
T ss_pred HHHHHHHHHCCCCEEEEEECCCcC--CCcchHHHHHHHHhhC--CCCEEEeCCcCCHHHHHHHHHCCCCEEEECchhhC
Confidence 355777788999999986543321 3455678888888743 24999999999999999999999999999997653
No 256
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=96.92 E-value=0.01 Score=62.59 Aligned_cols=111 Identities=21% Similarity=0.180 Sum_probs=74.7
Q ss_pred HHHHHccCccEEEEe-ccCHHHHHHHHHhCCcEEEEecCcccCC-C-CCcchHHHHHHHHHHhcCCCeEEEecCCCCHHH
Q 015722 252 KWLQTITSLPILVKG-VLTAEDASLAIQYGAAGIIVSNHGARQL-D-YVPATVMALEEVVQAAKGRVPVFLDGGVRRGTD 328 (402)
Q Consensus 252 ~~lr~~~~~Pv~vK~-~~~~~da~~a~~aGad~I~vsn~gg~~~-d-~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~d 328 (402)
...|+..+...++.. +.+.+++..|.+.|+|+|.++-...+.. . ..+..++.+.++.+.. ++||++-|||. .++
T Consensus 381 ~~~r~~~~~~~~iG~S~h~~~e~~~a~~~gadyi~~gpif~t~tk~~~~~~g~~~~~~~~~~~--~~Pv~aiGGI~-~~~ 457 (502)
T PLN02898 381 RLARSLLGPGKIIGVSCKTPEQAEQAWKDGADYIGCGGVFPTNTKANNKTIGLDGLREVCEAS--KLPVVAIGGIS-ASN 457 (502)
T ss_pred HHHHHhcCCCCEEEEeCCCHHHHHHHhhcCCCEEEECCeecCCCCCCCCCCCHHHHHHHHHcC--CCCEEEECCCC-HHH
Confidence 445554432233433 4688999999999999999753222211 1 1223467777776654 79999999996 999
Q ss_pred HHHHHHcCcC---EEEEchHHHHhhhcCChHHHHHHHHHHHHHHHH
Q 015722 329 VFKALALGAS---GVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFEL 371 (402)
Q Consensus 329 v~kal~lGAd---~V~iGr~~l~~~~~~G~~gv~~~i~~l~~el~~ 371 (402)
+.+++.+||+ +|.+++.++.. +.....++.+++.+..
T Consensus 458 ~~~~~~~G~~~~~gvav~~~i~~~------~d~~~~~~~~~~~~~~ 497 (502)
T PLN02898 458 AASVMESGAPNLKGVAVVSALFDQ------EDVLKATRKLHAILTE 497 (502)
T ss_pred HHHHHHcCCCcCceEEEEeHHhcC------CCHHHHHHHHHHHHHH
Confidence 9999999999 99999988632 2233445555554443
No 257
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=96.90 E-value=0.028 Score=54.55 Aligned_cols=85 Identities=18% Similarity=0.126 Sum_probs=63.9
Q ss_pred cHHHHHHHHHccCccEEEEec-cCHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCC
Q 015722 247 NWKDVKWLQTITSLPILVKGV-LTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRR 325 (402)
Q Consensus 247 ~~~~i~~lr~~~~~Pv~vK~~-~~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~ 325 (402)
+.++|+++++.+++||+-|.- ....+|+.+.++|+|.|.-|..- .|.-+....+++.+ ++|++ .|++|
T Consensus 55 ~p~~I~~I~~~V~iPVig~~kigh~~Ea~~L~~~GvDiIDeTe~l-------rPade~~~~~K~~f--~vpfm--ad~~~ 123 (287)
T TIGR00343 55 DPKMIKEIMDAVSIPVMAKVRIGHFVEAQILEALGVDYIDESEVL-------TPADWTFHIDKKKF--KVPFV--CGARD 123 (287)
T ss_pred CHHHHHHHHHhCCCCEEEEeeccHHHHHHHHHHcCCCEEEccCCC-------CcHHHHHHHHHHHc--CCCEE--ccCCC
Confidence 458899999999999998864 44789999999999999643221 12334455555444 55655 47999
Q ss_pred HHHHHHHHHcCcCEEEE
Q 015722 326 GTDVFKALALGASGVFV 342 (402)
Q Consensus 326 g~dv~kal~lGAd~V~i 342 (402)
-++++.++.+|||.|.-
T Consensus 124 l~EAlrai~~GadmI~T 140 (287)
T TIGR00343 124 LGEALRRINEGAAMIRT 140 (287)
T ss_pred HHHHHHHHHCCCCEEec
Confidence 99999999999998754
No 258
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=96.87 E-value=0.0069 Score=70.05 Aligned_cols=121 Identities=13% Similarity=0.150 Sum_probs=89.8
Q ss_pred HHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHh-----cCCCeEEE-ecCCCCHHHHHHHHHcCcCEEEEchH
Q 015722 272 DASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAA-----KGRVPVFL-DGGVRRGTDVFKALALGASGVFVGRP 345 (402)
Q Consensus 272 da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~-----~~~i~via-~GGI~~g~dv~kal~lGAd~V~iGr~ 345 (402)
+|..|++.|+.-|++|..+-..-....|.+-++..+..++ +.++.||+ +|.+|+.-|+...+..||++|.-.-+
T Consensus 602 ~A~~Av~~G~~ilILSDr~~~~~~~~IP~LLAv~aVH~hLir~glR~~vsLIveSGe~RevHhfA~LiGyGA~AV~PYLA 681 (1485)
T PRK11750 602 EAEQAVRDGTVLLVLSDRNIAKGRLPIPAAMAVGAVQHRLVDKGLRCDANIIVETASARDPHHFAVLLGFGATAVYPYLA 681 (1485)
T ss_pred HHHHHHHCCCeEEEEcCCCCCCCcCCcCHHHHHHHHHHHHHHcCCcceeeEEEecCCcCCHHHHHHHHhcChhhhhhHHH
Confidence 4678889999999999865322223455666666666554 34788888 89999999999999999999955443
Q ss_pred HH--HhhhcCC------hHHHHHHHHHHHHHHHHHHHHhCCCChhhhcccceecc
Q 015722 346 VP--FSLAVDG------EAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIVTH 392 (402)
Q Consensus 346 ~l--~~~~~~G------~~gv~~~i~~l~~el~~~m~~~G~~~i~el~~~~l~~~ 392 (402)
+- ..+...| ++.+.++++.+.++|..+|..+|.++++-.++.-+.-.
T Consensus 682 ~eti~~l~~~g~l~~~~~~a~~ny~~A~~kGLlKImsKMGIStl~SY~gaqiFEa 736 (1485)
T PRK11750 682 YETLGDLVDTGEILKDYRQVMLNYRKGINKGLYKIMSKMGISTIASYRGSQLFEA 736 (1485)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHhhcchhhHHhcCCcccccc
Confidence 31 1111222 36788999999999999999999999998877655443
No 259
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=96.86 E-value=0.0066 Score=57.23 Aligned_cols=66 Identities=18% Similarity=0.266 Sum_probs=52.5
Q ss_pred hCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHHH
Q 015722 279 YGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 348 (402)
Q Consensus 279 aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~ 348 (402)
.|...|.+-..||. +.+.+.+.+..+++.+. ++||+..||||+.+++.+++.+|||.|.+|+.+..
T Consensus 148 ~g~~~vYlE~gs~~---g~~v~~e~i~~v~~~~~-~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~~~~ 213 (223)
T TIGR01768 148 LGMPIIYLEAGSGA---PEPVPPELVAEVKKVLD-KARLFVGGGIRSVEKAREMAEAGADTIVTGNVIEE 213 (223)
T ss_pred cCCcEEEEEecCCC---CCCcCHHHHHHHHHHcC-CCCEEEecCCCCHHHHHHHHHcCCCEEEECcHHhh
Confidence 57787777533332 33456778888887763 69999999999999999999999999999998764
No 260
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=96.84 E-value=0.28 Score=47.88 Aligned_cols=109 Identities=19% Similarity=0.317 Sum_probs=73.1
Q ss_pred cCHHHHHHHH-HhCCcEEEEec---CcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCH-HHHHHHHHcCcCEEEE
Q 015722 268 LTAEDASLAI-QYGAAGIIVSN---HGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRG-TDVFKALALGASGVFV 342 (402)
Q Consensus 268 ~~~~da~~a~-~aGad~I~vsn---~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g-~dv~kal~lGAd~V~i 342 (402)
.++++|+.-. +.|+|.+-++. ||.+......-.++.|.+|.+.+ ++|+..=||=..+ +++.+++..|..=|-+
T Consensus 148 T~pe~a~~Fv~~TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~--~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi 225 (276)
T cd00947 148 TDPEEAEEFVEETGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERV--NVPLVLHGGSGIPDEQIRKAIKLGVCKINI 225 (276)
T ss_pred CCHHHHHHHHHHHCCCEEEeccCccccccCCCCCccCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEEEe
Confidence 5688887655 57999999874 55442101123578899999998 7999998877777 5588899999999999
Q ss_pred chHHHHhhhc-------CC------hHHHHHHHHHHHHHHHHHHHHhCC
Q 015722 343 GRPVPFSLAV-------DG------EAGVRKVLQMLRDEFELTMALSGC 378 (402)
Q Consensus 343 Gr~~l~~~~~-------~G------~~gv~~~i~~l~~el~~~m~~~G~ 378 (402)
++-+..+... .. ..-.....+.+.+.++..|..+|.
T Consensus 226 ~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~s 274 (276)
T cd00947 226 NTDLRLAFTAALREYLAENPKEFDPRKYLAPAIEAVKEVVKHKMELFGS 274 (276)
T ss_pred ChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9977554211 00 011233344556666666666664
No 261
>PRK08227 autoinducer 2 aldolase; Validated
Probab=96.84 E-value=0.013 Score=56.61 Aligned_cols=82 Identities=23% Similarity=0.369 Sum_probs=58.6
Q ss_pred HHHHHHccCccEEEEec------cCHH-----HHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEE
Q 015722 251 VKWLQTITSLPILVKGV------LTAE-----DASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFL 319 (402)
Q Consensus 251 i~~lr~~~~~Pv~vK~~------~~~~-----da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via 319 (402)
+..-...|++|+++ .. .+.. -++.+.+.|||.|.+.- +. +.+.++.+.+ .+||+.
T Consensus 132 v~~ea~~~G~Plla-~~prG~~~~~~~~~ia~aaRiaaELGADiVK~~y----------~~-~~f~~vv~a~--~vPVvi 197 (264)
T PRK08227 132 LVDAGLRYGMPVMA-VTAVGKDMVRDARYFSLATRIAAEMGAQIIKTYY----------VE-EGFERITAGC--PVPIVI 197 (264)
T ss_pred HHHHHHHhCCcEEE-EecCCCCcCchHHHHHHHHHHHHHHcCCEEecCC----------CH-HHHHHHHHcC--CCcEEE
Confidence 44455668899887 22 1211 26788999999999832 11 6778888765 799999
Q ss_pred ecCCCCH-HHH----HHHHHcCcCEEEEchHH
Q 015722 320 DGGVRRG-TDV----FKALALGASGVFVGRPV 346 (402)
Q Consensus 320 ~GGI~~g-~dv----~kal~lGAd~V~iGr~~ 346 (402)
.||=++. +|+ ..++..||.+|.+||=.
T Consensus 198 aGG~k~~~~~~L~~v~~ai~aGa~Gv~~GRNI 229 (264)
T PRK08227 198 AGGKKLPERDALEMCYQAIDEGASGVDMGRNI 229 (264)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCceeeechhh
Confidence 9999853 334 35777899999999954
No 262
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=96.84 E-value=0.029 Score=52.16 Aligned_cols=137 Identities=20% Similarity=0.225 Sum_probs=82.7
Q ss_pred cCChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCC
Q 015722 166 TKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRS 245 (402)
Q Consensus 166 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 245 (402)
..|.....+.+++++++|++.+= +|.- .+.-+| +-.
T Consensus 8 ~ad~~~l~~~i~~l~~~g~d~lH--iDiM----------Dg~fvp--------------------------------n~~ 43 (201)
T PF00834_consen 8 SADFLNLEEEIKRLEEAGADWLH--IDIM----------DGHFVP--------------------------------NLT 43 (201)
T ss_dssp GS-GGGHHHHHHHHHHTT-SEEE--EEEE----------BSSSSS--------------------------------SB-
T ss_pred hCCHHHHHHHHHHHHHcCCCEEE--Eeec----------ccccCC--------------------------------ccc
Confidence 45777888999999999998864 4420 010011 112
Q ss_pred ccHHHHHHHHHccCccEEEEe-ccCHH-HHHHHHHhCCcEEEEec---------------Ccc---------cC------
Q 015722 246 LNWKDVKWLQTITSLPILVKG-VLTAE-DASLAIQYGAAGIIVSN---------------HGA---------RQ------ 293 (402)
Q Consensus 246 ~~~~~i~~lr~~~~~Pv~vK~-~~~~~-da~~a~~aGad~I~vsn---------------~gg---------~~------ 293 (402)
+..+.++++|+.++.|+=+-. +.+++ -.+...++|+|.|++.- +|. +.
T Consensus 44 ~g~~~i~~i~~~~~~~~DvHLMv~~P~~~i~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T~~~~~~~ 123 (201)
T PF00834_consen 44 FGPDIIKAIRKITDLPLDVHLMVENPERYIEEFAEAGADYITFHAEATEDPKETIKYIKEAGIKAGIALNPETPVEELEP 123 (201)
T ss_dssp B-HHHHHHHHTTSSSEEEEEEESSSGGGHHHHHHHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS-GGGGTT
T ss_pred CCHHHHHHHhhcCCCcEEEEeeeccHHHHHHHHHhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCCCchHHHH
Confidence 345778888888888877765 34444 36677788888887741 011 10
Q ss_pred ----CC-----------CC----cchHHHHHHHHHHh---cCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHH
Q 015722 294 ----LD-----------YV----PATVMALEEVVQAA---KGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVP 347 (402)
Q Consensus 294 ----~d-----------~~----~~~~~~l~~i~~~~---~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l 347 (402)
+| +| +..++-+.++++.. +.++.|.+||||+ .+.+.++.++|||.+.+||.+.
T Consensus 124 ~l~~vD~VlvMsV~PG~~Gq~f~~~~~~KI~~l~~~~~~~~~~~~I~vDGGI~-~~~~~~~~~aGad~~V~Gs~iF 198 (201)
T PF00834_consen 124 YLDQVDMVLVMSVEPGFGGQKFIPEVLEKIRELRKLIPENGLDFEIEVDGGIN-EENIKQLVEAGADIFVAGSAIF 198 (201)
T ss_dssp TGCCSSEEEEESS-TTTSSB--HGGHHHHHHHHHHHHHHHTCGSEEEEESSES-TTTHHHHHHHT--EEEESHHHH
T ss_pred HhhhcCEEEEEEecCCCCcccccHHHHHHHHHHHHHHHhcCCceEEEEECCCC-HHHHHHHHHcCCCEEEECHHHh
Confidence 11 22 22344444444433 2369999999998 5678888899999999998754
No 263
>TIGR02134 transald_staph transaldolase. This small family of proteins is a member of the transaldolase sybfamily represented by pfam00923. Coxiella and Staphylococcus lack members of the known transaldolase equivalog families and appear to require a transaldolase activity for completion of the pentose phosphate pathway.
Probab=96.83 E-value=0.33 Score=46.26 Aligned_cols=177 Identities=11% Similarity=0.069 Sum_probs=112.4
Q ss_pred hhHHHHHHHHHcCCeEEecCCcc-------CCHHHHhh-----cCCCceEEEEeecCChhHHHHHHHHHHHcCCcEEEEe
Q 015722 123 GECATARAASAAGTIMTLSSWAT-------SSVEEVSS-----TGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALT 190 (402)
Q Consensus 123 ge~ala~aa~~~G~~~~vs~~~~-------~s~eei~~-----~~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~it 190 (402)
.|+.-.+.+.+.|..-.++|..+ ...+++.+ ..+++..+|++ ..|.+.+.+..++..+.+-. ++|-
T Consensus 13 Ad~~ei~~~~~~g~i~GvTTNPsll~k~g~~~~~~~~~~i~~~~~~~~vs~EV~-~~d~~~m~~eA~~l~~~~~n-v~VK 90 (236)
T TIGR02134 13 ANLEEMVKFSTHPYVKGFTTNPSLMRKAGIVDYEAFAHEALAQITDLPISFEVF-ADDLDEMEKEARYIASWGNN-VNVK 90 (236)
T ss_pred CCHHHHHHHHhCCCeeEEeCCHHHHHhcCCCCHHHHHHHHHHHccCCcEEEEEe-cCCHHHHHHHHHHHHhcCCC-eEEE
Confidence 36667777888887767766522 12333222 22367888986 55666655555555555532 3332
Q ss_pred cCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCCccHHHHHHHHHccCccEEEEeccCH
Q 015722 191 VDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTA 270 (402)
Q Consensus 191 vd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~Pv~vK~~~~~ 270 (402)
+ |.. .. ......+.++.+++. ++++-+=.+.++
T Consensus 91 I--P~T------------------~~--------------------------~G~~~l~ai~~L~~~-GI~vn~T~vfs~ 123 (236)
T TIGR02134 91 I--PVT------------------NT--------------------------KGESTGPLIQKLSAD-GITLNVTALTTI 123 (236)
T ss_pred E--CCc------------------Cc--------------------------ccchHHHHHHHHHHC-CCcEEeehcCCH
Confidence 2 210 00 000124556777665 788888788999
Q ss_pred HHHHHH---HHhC-CcEEEEecCcccCCCCCcchHHHHHHHHHHhc--CCCeEEEecCCCCHHHHHHHHHcCcCEEEEch
Q 015722 271 EDASLA---IQYG-AAGIIVSNHGARQLDYVPATVMALEEVVQAAK--GRVPVFLDGGVRRGTDVFKALALGASGVFVGR 344 (402)
Q Consensus 271 ~da~~a---~~aG-ad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~--~~i~via~GGI~~g~dv~kal~lGAd~V~iGr 344 (402)
..+..+ ..+| ++.|.. .-||--|.|.-....+.++.+.+. .+..|++.+ ||+..++.++..+|||.|-+.-
T Consensus 124 ~Qa~~aa~A~~aG~a~yisp--fvgR~dd~g~D~~~~i~~i~~i~~~~~~tkILaAS-~R~~~~v~~a~~~Gad~vTvp~ 200 (236)
T TIGR02134 124 EQVEKVCQSFTDGVPGIVSV--FAGRIADTGVDPEPHMREALEIVAQKPGVELLWAS-PRELFNIIQADRIGCDIITCAH 200 (236)
T ss_pred HHHHHHHHHHhCCCCeEEEE--ecchhhhcCCCcHHHHHHHHHHHHhCCCcEEEEEc-cCCHHHHHHHHHcCCCEEECCH
Confidence 988764 4589 588776 445544555555566666655442 367888877 9999999999999999999988
Q ss_pred HHHHhhh
Q 015722 345 PVPFSLA 351 (402)
Q Consensus 345 ~~l~~~~ 351 (402)
.++..+.
T Consensus 201 ~v~~~l~ 207 (236)
T TIGR02134 201 DILAKLP 207 (236)
T ss_pred HHHHHHH
Confidence 8776653
No 264
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=96.82 E-value=0.017 Score=59.41 Aligned_cols=96 Identities=15% Similarity=0.090 Sum_probs=67.4
Q ss_pred HHHHHccCccEEEEec-cCHHHHHHHHHhCCcEEEEecCcccCC---CCCcchHHHHHHHHHHhc-------CCCeEEEe
Q 015722 252 KWLQTITSLPILVKGV-LTAEDASLAIQYGAAGIIVSNHGARQL---DYVPATVMALEEVVQAAK-------GRVPVFLD 320 (402)
Q Consensus 252 ~~lr~~~~~Pv~vK~~-~~~~da~~a~~aGad~I~vsn~gg~~~---d~~~~~~~~l~~i~~~~~-------~~i~via~ 320 (402)
..+|+..+--.++... -+.+++.+|.+.|+|+|.++---.+.- ...+--++.|.++++.+. ..+||+|-
T Consensus 291 ~~aR~ilg~~~iIGvStHs~eEl~~A~~~gaDYI~lGPIFpT~TK~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAI 370 (437)
T PRK12290 291 ANLAQLTDAGIRLGLSTHGYYELLRIVQIQPSYIALGHIFPTTTKQMPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAI 370 (437)
T ss_pred hhhhhhcCCCCEEEEecCCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHHhhhccccccCCCCEEEE
Confidence 3444443222334433 568999999999999999863222221 122345677777766552 26999999
Q ss_pred cCCCCHHHHHHHHHcCcCEEEEchHHHH
Q 015722 321 GGVRRGTDVFKALALGASGVFVGRPVPF 348 (402)
Q Consensus 321 GGI~~g~dv~kal~lGAd~V~iGr~~l~ 348 (402)
||| +.+++...+.+||++|.+=|.++.
T Consensus 371 GGI-~~~Ni~~vl~aGa~GVAVVSAI~~ 397 (437)
T PRK12290 371 GGI-DQSNAEQVWQCGVSSLAVVRAITL 397 (437)
T ss_pred CCc-CHHHHHHHHHcCCCEEEEehHhhc
Confidence 999 599999999999999999998874
No 265
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.82 E-value=0.0069 Score=57.90 Aligned_cols=73 Identities=22% Similarity=0.171 Sum_probs=58.6
Q ss_pred HHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHH
Q 015722 271 EDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVP 347 (402)
Q Consensus 271 ~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l 347 (402)
+.|+...+.|+|.+.+-.--+. ..+.+...+.+.+|.+.+ .||.+.||||+-+|+.+++.+||+-|.||+..+
T Consensus 34 ~~A~~~~~~ga~~lhivDLd~a-~~g~~~n~~~i~~i~~~~---~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT~a~ 106 (241)
T PRK14114 34 ELVEKLIEEGFTLIHVVDLSKA-IENSVENLPVLEKLSEFA---EHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVL 106 (241)
T ss_pred HHHHHHHHCCCCEEEEEECCCc-ccCCcchHHHHHHHHhhc---CcEEEecCCCCHHHHHHHHHCCCCEEEECchhh
Confidence 5577778899999988542211 123456788899998875 699999999999999999999999999999654
No 266
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=96.81 E-value=0.008 Score=57.12 Aligned_cols=106 Identities=23% Similarity=0.349 Sum_probs=70.0
Q ss_pred ceEEEEeecCChh----HHHHHHHHHHHc---CCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCC
Q 015722 158 IRFFQLYVTKHRN----VDAQLVKRAERA---GFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTD 230 (402)
Q Consensus 158 ~~~~QLy~~~d~~----~~~~~l~ra~~~---G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~ 230 (402)
..|+.|-+..|.. ...+.+++++.. ||..+-+..|.|...+|..++.-.. +|+ +
T Consensus 91 ~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~~G~~~-vmP--------------l---- 151 (248)
T cd04728 91 TDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLEDAGCAA-VMP--------------L---- 151 (248)
T ss_pred CCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCE-eCC--------------C----
Confidence 3476665544433 234566666666 9999988888888877776652111 111 0
Q ss_pred chhhHHHhhhhcCCCccHHHHHHHHHccCccEEEEe-ccCHHHHHHHHHhCCcEEEEe
Q 015722 231 DSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKG-VLTAEDASLAIQYGAAGIIVS 287 (402)
Q Consensus 231 ~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~Pv~vK~-~~~~~da~~a~~aGad~I~vs 287 (402)
++.+++ ..+-.+.+.|+.+++..++||++-+ +.+++|+..+++.|+|++.+.
T Consensus 152 ----g~pIGs-g~Gi~~~~~I~~I~e~~~vpVI~egGI~tpeda~~AmelGAdgVlV~ 204 (248)
T cd04728 152 ----GSPIGS-GQGLLNPYNLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLLN 204 (248)
T ss_pred ----CcCCCC-CCCCCCHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 001111 0111246788999998889999974 789999999999999999884
No 267
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=96.77 E-value=0.009 Score=56.54 Aligned_cols=66 Identities=20% Similarity=0.345 Sum_probs=44.9
Q ss_pred HhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHHH
Q 015722 278 QYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 348 (402)
Q Consensus 278 ~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~ 348 (402)
=.|...|.+-...|+ .++.+ +.+.++++.+ .++|+|..|||||.+++.+++.+|||.|.+|+.+..
T Consensus 151 ~~g~~~iYLEaGSGa---~~~v~-~~v~~~~~~~-~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~iee 216 (230)
T PF01884_consen 151 YLGMPIIYLEAGSGA---YGPVP-EEVIAAVKKL-SDIPLIVGGGIRSPEQAREMAEAGADTIVVGNAIEE 216 (230)
T ss_dssp HTT-SEEEEE--TTS---SS-HH-HHHHHHHHHS-SSSEEEEESS--SHHHHHHHHCTTSSEEEESCHHHH
T ss_pred HhCCCEEEEEeCCCC---CCCcc-HHHHHHHHhc-CCccEEEeCCcCCHHHHHHHHHCCCCEEEECCEEEE
Confidence 458888888541121 12222 4444555555 489999999999999999999999999999998764
No 268
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=96.75 E-value=0.0076 Score=56.23 Aligned_cols=118 Identities=18% Similarity=0.187 Sum_probs=71.6
Q ss_pred ccHHHHHHHHHccCccEEEEec---cCHHH-HHHHHHhCCcEEEEecCcccC-----------CC---------------
Q 015722 246 LNWKDVKWLQTITSLPILVKGV---LTAED-ASLAIQYGAAGIIVSNHGARQ-----------LD--------------- 295 (402)
Q Consensus 246 ~~~~~i~~lr~~~~~Pv~vK~~---~~~~d-a~~a~~aGad~I~vsn~gg~~-----------~d--------------- 295 (402)
+..+.++++|+.+.+|+=+|.. .+.+. ++.+.++|+|.|+++...|.. ..
T Consensus 42 ~G~~~v~~ir~~~~i~~D~k~~di~~~~~~~~~~~~~~gad~vtvh~e~g~~~l~~~i~~~~~~g~~~~v~~~~~~~~~~ 121 (215)
T PRK13813 42 SGLGIIEELKRYAPVIADLKVADIPNTNRLICEAVFEAGAWGIIVHGFTGRDSLKAVVEAAAESGGKVFVVVEMSHPGAL 121 (215)
T ss_pred hCHHHHHHHHhcCCEEEEeeccccHHHHHHHHHHHHhCCCCEEEEcCcCCHHHHHHHHHHHHhcCCeEEEEEeCCCCCCC
Confidence 4557889999887666668874 23343 477889999999996432210 00
Q ss_pred -------------------CC----cchHHHHHHHHHHhcCCCeEEEecCCCCHH-HHHHHHHcCcCEEEEchHHHHhhh
Q 015722 296 -------------------YV----PATVMALEEVVQAAKGRVPVFLDGGVRRGT-DVFKALALGASGVFVGRPVPFSLA 351 (402)
Q Consensus 296 -------------------~~----~~~~~~l~~i~~~~~~~i~via~GGI~~g~-dv~kal~lGAd~V~iGr~~l~~~~ 351 (402)
.| ....+-+.++++....++. +++|||+... ++.+++.+|||.+.+||+++.+
T Consensus 122 ~~~~~~~~~v~~m~~e~G~~g~~~~~~~~~~i~~l~~~~~~~~~-ivdgGI~~~g~~~~~~~~aGad~iV~Gr~I~~~-- 198 (215)
T PRK13813 122 EFIQPHADKLAKLAQEAGAFGVVAPATRPERVRYIRSRLGDELK-IISPGIGAQGGKAADAIKAGADYVIVGRSIYNA-- 198 (215)
T ss_pred CCHHHHHHHHHHHHHHhCCCeEEECCCcchhHHHHHHhcCCCcE-EEeCCcCCCCCCHHHHHHcCCCEEEECcccCCC--
Confidence 00 0111222333333322233 4999999763 6778889999999999985532
Q ss_pred cCChHHHHHHHHHHHHHHH
Q 015722 352 VDGEAGVRKVLQMLRDEFE 370 (402)
Q Consensus 352 ~~G~~gv~~~i~~l~~el~ 370 (402)
+...+.++.++++++
T Consensus 199 ----~d~~~~~~~l~~~~~ 213 (215)
T PRK13813 199 ----ADPREAAKAINEEIR 213 (215)
T ss_pred ----CCHHHHHHHHHHHHh
Confidence 123455666666554
No 269
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.73 E-value=0.011 Score=55.50 Aligned_cols=81 Identities=25% Similarity=0.167 Sum_probs=60.0
Q ss_pred cHHHHHHHHHccC----ccEEEEeccCHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecC
Q 015722 247 NWKDVKWLQTITS----LPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGG 322 (402)
Q Consensus 247 ~~~~i~~lr~~~~----~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GG 322 (402)
..+.|+.+++..+ +.|.+..+++.++++.+.++|+++|+- -+ ...+.+..+. .. ++|++- |
T Consensus 51 a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fivs-P~---------~~~~v~~~~~-~~--~i~~iP--G 115 (213)
T PRK06552 51 ASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIVS-PS---------FNRETAKICN-LY--QIPYLP--G 115 (213)
T ss_pred HHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEEC-CC---------CCHHHHHHHH-Hc--CCCEEC--C
Confidence 4467899988773 445556679999999999999999863 11 1223333332 22 577665 8
Q ss_pred CCCHHHHHHHHHcCcCEEEE
Q 015722 323 VRRGTDVFKALALGASGVFV 342 (402)
Q Consensus 323 I~~g~dv~kal~lGAd~V~i 342 (402)
+.|++++.+++.+|||.|.+
T Consensus 116 ~~T~~E~~~A~~~Gad~vkl 135 (213)
T PRK06552 116 CMTVTEIVTALEAGSEIVKL 135 (213)
T ss_pred cCCHHHHHHHHHcCCCEEEE
Confidence 99999999999999999998
No 270
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=96.69 E-value=0.016 Score=57.88 Aligned_cols=67 Identities=21% Similarity=0.266 Sum_probs=52.4
Q ss_pred HHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEc
Q 015722 271 EDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVG 343 (402)
Q Consensus 271 ~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iG 343 (402)
+.++.+.++|+|.|.++.+.|. .....+.+.++++..+ +++|++ |.+.+.+++.+++.+|||+|.+|
T Consensus 97 ~~~~~l~eagv~~I~vd~~~G~----~~~~~~~i~~ik~~~p-~v~Vi~-G~v~t~~~A~~l~~aGaD~I~vg 163 (325)
T cd00381 97 ERAEALVEAGVDVIVIDSAHGH----SVYVIEMIKFIKKKYP-NVDVIA-GNVVTAEAARDLIDAGADGVKVG 163 (325)
T ss_pred HHHHHHHhcCCCEEEEECCCCC----cHHHHHHHHHHHHHCC-CceEEE-CCCCCHHHHHHHHhcCCCEEEEC
Confidence 4578889999999998753221 1234567788877653 688888 99999999999999999999984
No 271
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=96.67 E-value=0.019 Score=56.53 Aligned_cols=94 Identities=18% Similarity=0.144 Sum_probs=69.6
Q ss_pred HHHHHHHHccC-----ccEEEEeccCHHHHHHHHH------hCCcEEEEecC--cccCCCCCcchHHHHHHHHHHhcCCC
Q 015722 249 KDVKWLQTITS-----LPILVKGVLTAEDASLAIQ------YGAAGIIVSNH--GARQLDYVPATVMALEEVVQAAKGRV 315 (402)
Q Consensus 249 ~~i~~lr~~~~-----~Pv~vK~~~~~~da~~a~~------aGad~I~vsn~--gg~~~d~~~~~~~~l~~i~~~~~~~i 315 (402)
+.++.+++..+ .+|. -.+.+.++++.+.+ +|+|.|.+.|- ... -...+.+.+.++++.++++.
T Consensus 188 ~av~~~r~~~~~~~~~~kIe-VEv~tleea~ea~~~~~~~~agaDiImLDnm~~~~~---~~~~~~e~l~~av~~~~~~~ 263 (308)
T PLN02716 188 NAVQSADKYLEEKGLSMKIE-VETRTLEEVKEVLEYLSDTKTSLTRVMLDNMVVPLE---NGDVDVSMLKEAVELINGRF 263 (308)
T ss_pred HHHHHHHHhhhhcCCCeeEE-EEECCHHHHHHHHHhcccccCCCCEEEeCCCccccc---ccCCCHHHHHHHHHhhCCCc
Confidence 34666666221 2232 24578999999999 99999999884 111 11225677777777666688
Q ss_pred eEEEecCCCCHHHHHHHHHcCcCEEEEchHHH
Q 015722 316 PVFLDGGVRRGTDVFKALALGASGVFVGRPVP 347 (402)
Q Consensus 316 ~via~GGI~~g~dv~kal~lGAd~V~iGr~~l 347 (402)
++-++|||. .+.+.++..+|.|.+.+|.+..
T Consensus 264 ~lEaSGGIt-~~ni~~yA~tGVD~Is~Galth 294 (308)
T PLN02716 264 ETEASGNVT-LDTVHKIGQTGVTYISSGALTH 294 (308)
T ss_pred eEEEECCCC-HHHHHHHHHcCCCEEEeCcccc
Confidence 999999997 8999999999999999998654
No 272
>PRK00208 thiG thiazole synthase; Reviewed
Probab=96.66 E-value=0.013 Score=55.77 Aligned_cols=107 Identities=22% Similarity=0.358 Sum_probs=70.4
Q ss_pred CceEEEEeecCChh----HHHHHHHHHHHc---CCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCC
Q 015722 157 GIRFFQLYVTKHRN----VDAQLVKRAERA---GFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKT 229 (402)
Q Consensus 157 ~~~~~QLy~~~d~~----~~~~~l~ra~~~---G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~ 229 (402)
+..|+.|-+..|.. ...+.+++++.. ||..+-+..|.|...+|..++.-.+ +|+ +
T Consensus 90 ~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~~~G~~~-vmP--------------l--- 151 (250)
T PRK00208 90 GTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEEAGCAA-VMP--------------L--- 151 (250)
T ss_pred CCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCE-eCC--------------C---
Confidence 34577765544433 335566677766 9999978888888877777652111 111 0
Q ss_pred CchhhHHHhhhhcCCCccHHHHHHHHHccCccEEEE-eccCHHHHHHHHHhCCcEEEEe
Q 015722 230 DDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVK-GVLTAEDASLAIQYGAAGIIVS 287 (402)
Q Consensus 230 ~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~Pv~vK-~~~~~~da~~a~~aGad~I~vs 287 (402)
++.+++ ..+-.+.+.++.+++..++||++- ++.+++|+..+++.|+|++.+.
T Consensus 152 -----g~pIGs-g~gi~~~~~i~~i~e~~~vpVIveaGI~tpeda~~AmelGAdgVlV~ 204 (250)
T PRK00208 152 -----GAPIGS-GLGLLNPYNLRIIIEQADVPVIVDAGIGTPSDAAQAMELGADAVLLN 204 (250)
T ss_pred -----CcCCCC-CCCCCCHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 001111 011124667899998888999986 5689999999999999999884
No 273
>PRK08999 hypothetical protein; Provisional
Probab=96.63 E-value=0.015 Score=57.24 Aligned_cols=77 Identities=21% Similarity=0.233 Sum_probs=59.5
Q ss_pred ccCHHHHHHHHHhCCcEEEEecCcccCC--CCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEch
Q 015722 267 VLTAEDASLAIQYGAAGIIVSNHGARQL--DYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGR 344 (402)
Q Consensus 267 ~~~~~da~~a~~aGad~I~vsn~gg~~~--d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr 344 (402)
+.+.++++.|.+.|+|+|.++--..+.- +..+..++.+.++++.. ++||+|-||| +.+++...+.+||++|.+-+
T Consensus 233 ~h~~~~~~~a~~~~~dyi~~gpvf~t~tk~~~~~~g~~~~~~~~~~~--~~Pv~AiGGI-~~~~~~~~~~~g~~gva~i~ 309 (312)
T PRK08999 233 CHDAEELARAQRLGVDFAVLSPVQPTASHPGAAPLGWEGFAALIAGV--PLPVYALGGL-GPGDLEEAREHGAQGIAGIR 309 (312)
T ss_pred cCCHHHHHHHHhcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEECCC-CHHHHHHHHHhCCCEEEEEE
Confidence 4678899999999999999874332221 11223467788887766 7999999999 79999999999999998876
Q ss_pred HH
Q 015722 345 PV 346 (402)
Q Consensus 345 ~~ 346 (402)
.+
T Consensus 310 ~~ 311 (312)
T PRK08999 310 GL 311 (312)
T ss_pred Ee
Confidence 43
No 274
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=96.63 E-value=0.015 Score=55.91 Aligned_cols=70 Identities=24% Similarity=0.312 Sum_probs=56.2
Q ss_pred HHHHHHHHhC-CcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHH
Q 015722 271 EDASLAIQYG-AAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVP 347 (402)
Q Consensus 271 ~da~~a~~aG-ad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l 347 (402)
+.++.+...| +|+|+|++.+- +.+..++.|.++++.+. +.|++..||+. ++.+.+++.. ||+|.+|+-|=
T Consensus 161 e~a~~~~~~~~aDavivtG~~T----G~~~d~~~l~~vr~~~~-~~PvllggGvt-~eNv~e~l~~-adGviVgS~~K 231 (257)
T TIGR00259 161 SIALDTVERGLADAVILSGKTT----GTEVDLELLKLAKETVK-DTPVLAGSGVN-LENVEELLSI-ADGVIVATTIK 231 (257)
T ss_pred HHHHHHHHhcCCCEEEECcCCC----CCCCCHHHHHHHHhccC-CCeEEEECCCC-HHHHHHHHhh-CCEEEECCCcc
Confidence 4567777666 99999987531 34678899999887553 68999999997 9999999987 99999999753
No 275
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=96.61 E-value=0.012 Score=56.29 Aligned_cols=72 Identities=31% Similarity=0.158 Sum_probs=56.7
Q ss_pred HHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHH
Q 015722 272 DASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVP 347 (402)
Q Consensus 272 da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l 347 (402)
.++...+.|+..+.+..--+. .+.+...+.+.++.+.+ .+|+.+.|||||.+|+.+++.+||+-|.+|+..+
T Consensus 36 ~a~~~~~~g~~~lhivDLd~a--~g~~~n~~~i~~i~~~~--~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~a~ 107 (243)
T TIGR01919 36 AAKWWEQGGAEWIHLVDLDAA--FGGGNNEMMLEEVVKLL--VVVEELSGGRRDDSSLRAALTGGRARVNGGTAAL 107 (243)
T ss_pred HHHHHHhCCCeEEEEEECCCC--CCCcchHHHHHHHHHHC--CCCEEEcCCCCCHHHHHHHHHcCCCEEEECchhh
Confidence 345557788888887532111 13456788899999877 6999999999999999999999999999999754
No 276
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=96.61 E-value=0.018 Score=52.84 Aligned_cols=82 Identities=28% Similarity=0.284 Sum_probs=60.5
Q ss_pred cHHHHHHHHHccC-ccEEEEeccCHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCC
Q 015722 247 NWKDVKWLQTITS-LPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRR 325 (402)
Q Consensus 247 ~~~~i~~lr~~~~-~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~ 325 (402)
..+.++.+++..+ .++....+.+.+.+..+.++|+|+|...+ . . ..+.+.++.. +++++. |+.|
T Consensus 42 ~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~p~---~-------~-~~~~~~~~~~--~~~~i~--gv~t 106 (190)
T cd00452 42 ALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIVSPG---L-------D-PEVVKAANRA--GIPLLP--GVAT 106 (190)
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEcCC---C-------C-HHHHHHHHHc--CCcEEC--CcCC
Confidence 3457889988875 55565567889999999999999996421 1 1 1233333333 567776 8889
Q ss_pred HHHHHHHHHcCcCEEEEc
Q 015722 326 GTDVFKALALGASGVFVG 343 (402)
Q Consensus 326 g~dv~kal~lGAd~V~iG 343 (402)
.+++.+++.+|||.|.+-
T Consensus 107 ~~e~~~A~~~Gad~i~~~ 124 (190)
T cd00452 107 PTEIMQALELGADIVKLF 124 (190)
T ss_pred HHHHHHHHHCCCCEEEEc
Confidence 999999999999999983
No 277
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=96.60 E-value=0.01 Score=57.31 Aligned_cols=71 Identities=30% Similarity=0.193 Sum_probs=58.8
Q ss_pred HHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHHH
Q 015722 270 AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 348 (402)
Q Consensus 270 ~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~ 348 (402)
.+.|+.-.+.|++.+.|-.-+| +.+...+.+.+|++ + .+||-+-||||+ +++.++|.+||+-|.||+..+.
T Consensus 46 ~~~A~~~~~~Ga~~lHvVDLdg----g~~~n~~~i~~i~~-~--~~~vqvGGGIR~-e~i~~~l~~Ga~rViigT~Av~ 116 (262)
T PLN02446 46 AEFAEMYKRDGLTGGHVIMLGA----DDASLAAALEALRA-Y--PGGLQVGGGVNS-ENAMSYLDAGASHVIVTSYVFR 116 (262)
T ss_pred HHHHHHHHHCCCCEEEEEECCC----CCcccHHHHHHHHh-C--CCCEEEeCCccH-HHHHHHHHcCCCEEEEchHHHh
Confidence 4678888999999998864332 23556788888888 6 599999999997 9999999999999999997664
No 278
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=96.52 E-value=0.71 Score=45.26 Aligned_cols=109 Identities=18% Similarity=0.255 Sum_probs=72.1
Q ss_pred cCHHHHHHHH-HhCCcEEEEec---CcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCC-HHHHHHHHHcCcCEEEE
Q 015722 268 LTAEDASLAI-QYGAAGIIVSN---HGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRR-GTDVFKALALGASGVFV 342 (402)
Q Consensus 268 ~~~~da~~a~-~aGad~I~vsn---~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~-g~dv~kal~lGAd~V~i 342 (402)
.++++|+.-. +.|+|.+-++. ||-+.. ...-.++.|.+|++.+ ++|+..=||=.. -+++.|++..|..=|-|
T Consensus 155 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~-~p~Ld~~~L~~I~~~~--~vPLVLHGgSG~~~e~~~~ai~~Gi~KiNi 231 (284)
T PRK09195 155 TDPAQAREFVEATGIDSLAVAIGTAHGMYKG-EPKLDFDRLENIRQWV--NIPLVLHGASGLPTKDIQQTIKLGICKVNV 231 (284)
T ss_pred CCHHHHHHHHHHHCcCEEeeccCccccccCC-CCcCCHHHHHHHHHHh--CCCeEEecCCCCCHHHHHHHHHcCCeEEEe
Confidence 5788887655 67999999874 664421 1123578899999988 788887774333 46777899999999999
Q ss_pred chHHHHhhhc-------CC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q 015722 343 GRPVPFSLAV-------DG------EAGVRKVLQMLRDEFELTMALSGCR 379 (402)
Q Consensus 343 Gr~~l~~~~~-------~G------~~gv~~~i~~l~~el~~~m~~~G~~ 379 (402)
+|-+..+... .. ..-.....+.+++.++..|..+|..
T Consensus 232 ~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 281 (284)
T PRK09195 232 ATELKIAFSQALKNYLTEHPEANDPRHYLQPAKSAMKDVVSKVIADCGCE 281 (284)
T ss_pred CcHHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9976543210 00 0113334455666677777777653
No 279
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=96.52 E-value=0.019 Score=53.20 Aligned_cols=82 Identities=28% Similarity=0.246 Sum_probs=56.7
Q ss_pred cHHHHHHHHHcc-CccEEEEeccCHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCC
Q 015722 247 NWKDVKWLQTIT-SLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRR 325 (402)
Q Consensus 247 ~~~~i~~lr~~~-~~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~ 325 (402)
..+.|+.+++.. ++-|.+..+.+.++++.+.++|+++++--+ ...+.+..+.+. ++|++- |+.|
T Consensus 46 a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~FivSP~----------~~~~v~~~~~~~---~i~~iP--G~~T 110 (196)
T PF01081_consen 46 ALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIVSPG----------FDPEVIEYAREY---GIPYIP--GVMT 110 (196)
T ss_dssp HHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEEESS------------HHHHHHHHHH---TSEEEE--EESS
T ss_pred HHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEECCC----------CCHHHHHHHHHc---CCcccC--CcCC
Confidence 357788888877 445555667999999999999999986411 122344444432 577765 7899
Q ss_pred HHHHHHHHHcCcCEEEEc
Q 015722 326 GTDVFKALALGASGVFVG 343 (402)
Q Consensus 326 g~dv~kal~lGAd~V~iG 343 (402)
+.++.+|+.+||+.|=+=
T Consensus 111 ptEi~~A~~~G~~~vK~F 128 (196)
T PF01081_consen 111 PTEIMQALEAGADIVKLF 128 (196)
T ss_dssp HHHHHHHHHTT-SEEEET
T ss_pred HHHHHHHHHCCCCEEEEe
Confidence 999999999999999764
No 280
>PF04898 Glu_syn_central: Glutamate synthase central domain; InterPro: IPR006982 Glutamate synthase (GltS)1 is a key enzyme in the early stages of the assimilation of ammonia in bacteria, yeasts, and plants. In bacteria, L-glutamate is involved in osmoregulation, is the precursor for other amino acids, and can be the precursor for haem biosynthesis. In plants, GltS is especially essential in the reassimilation of ammonia released by photorespiration. On the basis of the amino acid sequence and the nature of the electron donor, three different classes of GltS can de defined as follows: 1) ferredoxin-dependent GltS (Fd-GltS), 2) NADPH-dependent GltS (NADPH-GltS), and 3) NADH-dependent GltS (properties of the three classes have been reviewed extensively []). The enzyme is a complex iron-sulphur flavoprotein catalysing the reductive transfer of the amido nitrogen from L-glutamine to 2-oxoglutarate to form two molecules of L-glutamate via intramolecular channelling of ammonia from the amidotransferase domain to the FMN-binding domain. Reaction of amidotransferase domain: L-glutamine + H2O = L-glutamate + NH3 Reactions of FMN-binding domain: 2-oxoglutarate + NH3 = 2-iminoglutarate + H2O 2e + FMNox = FMNred 2-iminoglutarate + FMNred = L-glutamate + FMNox The central domain of glutamate synthase connects the N-terminal amidotransferase domain with the FMN-binding domain and has an alpha/beta overall topology [].; GO: 0015930 glutamate synthase activity, 0006807 nitrogen compound metabolic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=96.48 E-value=0.038 Score=53.95 Aligned_cols=120 Identities=23% Similarity=0.251 Sum_probs=76.5
Q ss_pred HHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHh-----cCCCeEEE-ecCCCCHHHHHHHHHcCcCEEEEch
Q 015722 271 EDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAA-----KGRVPVFL-DGGVRRGTDVFKALALGASGVFVGR 344 (402)
Q Consensus 271 ~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~-----~~~i~via-~GGI~~g~dv~kal~lGAd~V~iGr 344 (402)
++|..|.+.|+..|++|..+...-....|.+-++..+..++ +.++.||+ +|-+|+.-|+...+-.||++|.=.-
T Consensus 146 ~ea~~Av~~G~~ilILsDr~~~~~~~~IP~lLAv~avh~~Li~~glR~~~slIvesge~re~Hh~a~LlGyGA~AV~PYl 225 (287)
T PF04898_consen 146 EEAEAAVREGANILILSDRNASPDRAPIPSLLAVSAVHHHLIREGLRTRVSLIVESGEAREVHHFATLLGYGADAVNPYL 225 (287)
T ss_dssp HHHHHHHHCT-SEEEEESTC-CTTEEE--HHHHHHHHHHHHHCTT-CCC-EEEEEESS--SHHHHHHHHCTT-SEEEEHC
T ss_pred HHHHHHHHcCCcEEEECCCCCCcCcccccHHHHHHHHHHHHHHcCCcceeeEEEecCCcccHHHHHHHHcCCHhhhcHHH
Confidence 35788899999999999765321112344555566666554 23566655 5789999999999999999985333
Q ss_pred HH--HHhhhcCC-------hHHHHHHHHHHHHHHHHHHHHhCCCChhhhccccee
Q 015722 345 PV--PFSLAVDG-------EAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 390 (402)
Q Consensus 345 ~~--l~~~~~~G-------~~gv~~~i~~l~~el~~~m~~~G~~~i~el~~~~l~ 390 (402)
++ +..+...| ++.+.++++.+.++|...|..+|...++--++.-+.
T Consensus 226 a~e~~~~~~~~~~~~~~~~~~~~~ny~~a~~kGllKimSKMGIstl~SY~gaqiF 280 (287)
T PF04898_consen 226 AYETIRELAERGELPELSPEEAIKNYRKALEKGLLKIMSKMGISTLQSYRGAQIF 280 (287)
T ss_dssp CHHHHHHCCCCCCCCT--HHHHHHHHHHHHHHHHHHHHHCTT--BHHHHCCS--E
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcChHHhhhcccceee
Confidence 22 11222223 367899999999999999999999999888765443
No 281
>PLN02591 tryptophan synthase
Probab=96.43 E-value=0.021 Score=54.88 Aligned_cols=40 Identities=30% Similarity=0.483 Sum_probs=35.4
Q ss_pred HHHHHHHHccCccEEEE-eccCHHHHHHHHHhCCcEEEEec
Q 015722 249 KDVKWLQTITSLPILVK-GVLTAEDASLAIQYGAAGIIVSN 288 (402)
Q Consensus 249 ~~i~~lr~~~~~Pv~vK-~~~~~~da~~a~~aGad~I~vsn 288 (402)
+.++.+|+.++.|+.+. |+.++++++.+.+.|+|+++|..
T Consensus 179 ~~i~~vk~~~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGS 219 (250)
T PLN02591 179 SLLQELKEVTDKPVAVGFGISKPEHAKQIAGWGADGVIVGS 219 (250)
T ss_pred HHHHHHHhcCCCceEEeCCCCCHHHHHHHHhcCCCEEEECH
Confidence 55999999999999997 56789999999999999999953
No 282
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=96.41 E-value=0.11 Score=50.12 Aligned_cols=69 Identities=30% Similarity=0.392 Sum_probs=55.0
Q ss_pred HHHHHH-HHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHH
Q 015722 271 EDASLA-IQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVP 347 (402)
Q Consensus 271 ~da~~a-~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l 347 (402)
+.++.+ ...++|+|+|++.. .+.+++++.|.++++.++ +||++.+|+. .+-+.+.|.. ||++.||+-|-
T Consensus 162 ~~~~~a~~~~~aDaviVtG~~----TG~~~~~~~l~~vr~~~~--~PVlvGSGvt-~~Ni~~~l~~-ADG~IVGS~~K 231 (254)
T PF03437_consen 162 EAAKDAVERGGADAVIVTGKA----TGEPPDPEKLKRVREAVP--VPVLVGSGVT-PENIAEYLSY-ADGAIVGSYFK 231 (254)
T ss_pred HHHHHHHHhcCCCEEEECCcc----cCCCCCHHHHHHHHhcCC--CCEEEecCCC-HHHHHHHHHh-CCEEEEeeeee
Confidence 334454 57899999998642 144778999999999883 9999999987 8889888865 99999999764
No 283
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=96.41 E-value=0.5 Score=45.77 Aligned_cols=181 Identities=18% Similarity=0.176 Sum_probs=109.6
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCeEEe--c---CCccCCHHHHh-------hcCC--CceEEEEeecCChhHH
Q 015722 107 PIMIAPTAFQKMAHPEGECATARAASAAGTIMTL--S---SWATSSVEEVS-------STGP--GIRFFQLYVTKHRNVD 172 (402)
Q Consensus 107 Pi~iAPm~~~~~~~~~ge~ala~aa~~~G~~~~v--s---~~~~~s~eei~-------~~~~--~~~~~QLy~~~d~~~~ 172 (402)
|.++.|+.-.+-.+.++-..+.+-+.+.|+..++ + ++.+.+.+|-. +... -+.++++- ..+.+..
T Consensus 3 ~a~~TPf~~dg~iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~-~~~~~~~ 81 (281)
T cd00408 3 PALVTPFTADGEVDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVG-ANSTREA 81 (281)
T ss_pred CCeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecC-CccHHHH
Confidence 5567777555555666667888888888875544 2 23455666532 2222 34555554 3355667
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCCccHHHHH
Q 015722 173 AQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVK 252 (402)
Q Consensus 173 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~ 252 (402)
.++++.++++|++++.+. .|... + . +..-..+..+
T Consensus 82 i~~a~~a~~~Gad~v~v~--pP~y~------------~--~-----------------------------~~~~~~~~~~ 116 (281)
T cd00408 82 IELARHAEEAGADGVLVV--PPYYN------------K--P-----------------------------SQEGIVAHFK 116 (281)
T ss_pred HHHHHHHHHcCCCEEEEC--CCcCC------------C--C-----------------------------CHHHHHHHHH
Confidence 788899999999999872 23210 0 0 0001234456
Q ss_pred HHHHccCccEEEEec-------cCHHHHHHHHHh-CCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCC
Q 015722 253 WLQTITSLPILVKGV-------LTAEDASLAIQY-GAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVR 324 (402)
Q Consensus 253 ~lr~~~~~Pv~vK~~-------~~~~da~~a~~a-Gad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~ 324 (402)
.+.+.+++|+++-.. .+++..+++.+. .+.+|+-+. .....+.++.+..++++.|+. |.
T Consensus 117 ~ia~~~~~pi~iYn~P~~tg~~l~~~~~~~L~~~~~v~giK~s~----------~d~~~~~~~~~~~~~~~~v~~-G~-- 183 (281)
T cd00408 117 AVADASDLPVILYNIPGRTGVDLSPETIARLAEHPNIVGIKDSS----------GDLDRLTRLIALLGPDFAVLS-GD-- 183 (281)
T ss_pred HHHhcCCCCEEEEECccccCCCCCHHHHHHHhcCCCEEEEEeCC----------CCHHHHHHHHHhcCCCeEEEE-cc--
Confidence 666777899987633 567777777652 233444321 344555566655544555553 42
Q ss_pred CHHHHHHHHHcCcCEEEEchHHH
Q 015722 325 RGTDVFKALALGASGVFVGRPVP 347 (402)
Q Consensus 325 ~g~dv~kal~lGAd~V~iGr~~l 347 (402)
...+...+.+|+++++.|...+
T Consensus 184 -d~~~~~~l~~G~~G~i~~~~n~ 205 (281)
T cd00408 184 -DDLLLPALALGADGAISGAANV 205 (281)
T ss_pred -hHHHHHHHHcCCCEEEehHHhh
Confidence 5678889999999999997543
No 284
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.40 E-value=0.023 Score=52.86 Aligned_cols=81 Identities=15% Similarity=0.120 Sum_probs=57.9
Q ss_pred cHHHHHHHHHccC-ccEEEEeccCHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCC
Q 015722 247 NWKDVKWLQTITS-LPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRR 325 (402)
Q Consensus 247 ~~~~i~~lr~~~~-~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~ 325 (402)
..+.|+.+++..+ +-|.+..+++.++++.+.++|+++|+- -+ ...+.+..++ .. ++|++ =|+.|
T Consensus 42 a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~FivS-P~---------~~~~vi~~a~-~~--~i~~i--PG~~T 106 (201)
T PRK06015 42 ALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIVS-PG---------TTQELLAAAN-DS--DVPLL--PGAAT 106 (201)
T ss_pred HHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEEC-CC---------CCHHHHHHHH-Hc--CCCEe--CCCCC
Confidence 3466888887764 445556679999999999999999853 11 1223333333 22 45555 58999
Q ss_pred HHHHHHHHHcCcCEEEE
Q 015722 326 GTDVFKALALGASGVFV 342 (402)
Q Consensus 326 g~dv~kal~lGAd~V~i 342 (402)
+.++..|+.+||+.|=+
T Consensus 107 ptEi~~A~~~Ga~~vK~ 123 (201)
T PRK06015 107 PSEVMALREEGYTVLKF 123 (201)
T ss_pred HHHHHHHHHCCCCEEEE
Confidence 99999999999999854
No 285
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=96.36 E-value=0.048 Score=54.39 Aligned_cols=91 Identities=18% Similarity=0.294 Sum_probs=71.5
Q ss_pred CCCceEEEEeecCChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhh
Q 015722 155 GPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGL 234 (402)
Q Consensus 155 ~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 234 (402)
.+.+....+-...|.+.+.++++.++++|++.+-|+--+ ++++..
T Consensus 140 l~~pVs~KIRI~~d~~kTvd~ak~~e~aG~~~ltVHGRt-------r~~kg~---------------------------- 184 (358)
T KOG2335|consen 140 LNVPVSVKIRIFVDLEKTVDYAKMLEDAGVSLLTVHGRT-------REQKGL---------------------------- 184 (358)
T ss_pred cCCCeEEEEEecCcHHHHHHHHHHHHhCCCcEEEEeccc-------HHhcCC----------------------------
Confidence 345677888888999999999999999999998775322 222100
Q ss_pred HHHhhhhcCCCccHHHHHHHHHccC-ccEEEEe-ccCHHHHHHHHH-hCCcEEEEe
Q 015722 235 ASYVANQIDRSLNWKDVKWLQTITS-LPILVKG-VLTAEDASLAIQ-YGAAGIIVS 287 (402)
Q Consensus 235 ~~~~~~~~d~~~~~~~i~~lr~~~~-~Pv~vK~-~~~~~da~~a~~-aGad~I~vs 287 (402)
..+..+|+.|+.+++..+ +||++-| |.+.+|+.++.+ .|+|||.+.
T Consensus 185 -------~~~pad~~~i~~v~~~~~~ipviaNGnI~~~~d~~~~~~~tG~dGVM~a 233 (358)
T KOG2335|consen 185 -------KTGPADWEAIKAVRENVPDIPVIANGNILSLEDVERCLKYTGADGVMSA 233 (358)
T ss_pred -------CCCCcCHHHHHHHHHhCcCCcEEeeCCcCcHHHHHHHHHHhCCceEEec
Confidence 134468999999999997 9999976 688999999887 999999874
No 286
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=96.36 E-value=1.2 Score=43.80 Aligned_cols=109 Identities=17% Similarity=0.256 Sum_probs=72.6
Q ss_pred cCHHHHHHHH-HhCCcEEEEec---CcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCC-HHHHHHHHHcCcCEEEE
Q 015722 268 LTAEDASLAI-QYGAAGIIVSN---HGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRR-GTDVFKALALGASGVFV 342 (402)
Q Consensus 268 ~~~~da~~a~-~aGad~I~vsn---~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~-g~dv~kal~lGAd~V~i 342 (402)
.++++|+.-. +.|+|.+-++. ||-+. ....-.++.|.+|++.+ ++|+..=||=.. -+++.|++.+|..=|-|
T Consensus 155 T~peea~~Fv~~TgvD~LAvaiGt~HG~Y~-~~p~Ldfd~l~~I~~~~--~vPLVLHGgSG~~~e~~~kai~~GI~KiNi 231 (286)
T PRK12738 155 TDPQEAKRFVELTGVDSLAVAIGTAHGLYS-KTPKIDFQRLAEIREVV--DVPLVLHGASDVPDEFVRRTIELGVTKVNV 231 (286)
T ss_pred CCHHHHHHHHHHhCCCEEEeccCcccCCCC-CCCcCCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEEEe
Confidence 5788876654 67999999873 56442 11123578999999988 789888774333 56777899999999999
Q ss_pred chHHHHhhhc-------CC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q 015722 343 GRPVPFSLAV-------DG------EAGVRKVLQMLRDEFELTMALSGCR 379 (402)
Q Consensus 343 Gr~~l~~~~~-------~G------~~gv~~~i~~l~~el~~~m~~~G~~ 379 (402)
+|-+..+... .. ..-.....+.+++-++..|..+|..
T Consensus 232 ~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 281 (286)
T PRK12738 232 ATELKIAFAGAVKAWFAENPQGNDPRYYMRVGMDAMKEVVRNKINVCGSA 281 (286)
T ss_pred CcHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9976554211 00 0123334455666677777777754
No 287
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=96.35 E-value=0.51 Score=46.11 Aligned_cols=183 Identities=19% Similarity=0.161 Sum_probs=106.6
Q ss_pred CceeecccccccccCChhhHHHHHHHHHcCCeEEe-----cCCccCCHHHHh-------hcCC--CceEEEEeecCChhH
Q 015722 106 MPIMIAPTAFQKMAHPEGECATARAASAAGTIMTL-----SSWATSSVEEVS-------STGP--GIRFFQLYVTKHRNV 171 (402)
Q Consensus 106 ~Pi~iAPm~~~~~~~~~ge~ala~aa~~~G~~~~v-----s~~~~~s~eei~-------~~~~--~~~~~QLy~~~d~~~ 171 (402)
.|.++.|+.-.+-.+.++-..+.+-+.+.|+-..+ +++.+.+.+|-. +..+ -+.++++. ..+.+.
T Consensus 6 ~~~~~TPf~~dg~iD~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~-~~~~~~ 84 (292)
T PRK03170 6 ITALVTPFKEDGSVDFAALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTG-SNSTAE 84 (292)
T ss_pred eeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecC-CchHHH
Confidence 56677887555555666666888888888975544 233456776632 2222 34566654 346677
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCCccHHHH
Q 015722 172 DAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDV 251 (402)
Q Consensus 172 ~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i 251 (402)
..++++.++++|++++.+. .|... +. ..+-..+..
T Consensus 85 ~i~~a~~a~~~G~d~v~~~--pP~~~------------~~-------------------------------~~~~i~~~~ 119 (292)
T PRK03170 85 AIELTKFAEKAGADGALVV--TPYYN------------KP-------------------------------TQEGLYQHF 119 (292)
T ss_pred HHHHHHHHHHcCCCEEEEC--CCcCC------------CC-------------------------------CHHHHHHHH
Confidence 7888899999999999873 23210 00 000112345
Q ss_pred HHHHHccCccEEEEec-------cCHHHHHHHHHhC-CcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCC
Q 015722 252 KWLQTITSLPILVKGV-------LTAEDASLAIQYG-AAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGV 323 (402)
Q Consensus 252 ~~lr~~~~~Pv~vK~~-------~~~~da~~a~~aG-ad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI 323 (402)
+.+.+.+++|+++=.. .+++..+++.+.+ +-+|.-+ ...+..+.++.+..+++..|+. |
T Consensus 120 ~~ia~~~~~pv~lYn~P~~~g~~l~~~~~~~L~~~p~v~giK~s----------~~d~~~~~~~~~~~~~~~~v~~-G-- 186 (292)
T PRK03170 120 KAIAEATDLPIILYNVPGRTGVDILPETVARLAEHPNIVGIKEA----------TGDLERVSELIELVPDDFAVYS-G-- 186 (292)
T ss_pred HHHHhcCCCCEEEEECccccCCCCCHHHHHHHHcCCCEEEEEEC----------CCCHHHHHHHHHhCCCCeEEEE-C--
Confidence 5666667788886532 4567777665432 2233321 1123445555544444454443 3
Q ss_pred CCHHHHHHHHHcCcCEEEEchHHHH
Q 015722 324 RRGTDVFKALALGASGVFVGRPVPF 348 (402)
Q Consensus 324 ~~g~dv~kal~lGAd~V~iGr~~l~ 348 (402)
....++..+.+|+++++-|...++
T Consensus 187 -~d~~~~~~l~~G~~G~is~~~n~~ 210 (292)
T PRK03170 187 -DDALALPFLALGGVGVISVAANVA 210 (292)
T ss_pred -ChHhHHHHHHcCCCEEEEhHHhhh
Confidence 234467888999999998876443
No 288
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=96.34 E-value=0.14 Score=47.83 Aligned_cols=91 Identities=13% Similarity=0.049 Sum_probs=59.4
Q ss_pred HHHHHHHHHccCccEEEEe--------c---cCHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCe
Q 015722 248 WKDVKWLQTITSLPILVKG--------V---LTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVP 316 (402)
Q Consensus 248 ~~~i~~lr~~~~~Pv~vK~--------~---~~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~ 316 (402)
.+.++++++.+++|++... + .+.++++.+.++|+|.|++...-... ..+....+.+..+++. ..++
T Consensus 45 ~~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~aGad~I~~d~~~~~~-p~~~~~~~~i~~~~~~--~~i~ 121 (221)
T PRK01130 45 VEDIKAIRAVVDVPIIGIIKRDYPDSEVYITPTLKEVDALAAAGADIIALDATLRPR-PDGETLAELVKRIKEY--PGQL 121 (221)
T ss_pred HHHHHHHHHhCCCCEEEEEecCCCCCCceECCCHHHHHHHHHcCCCEEEEeCCCCCC-CCCCCHHHHHHHHHhC--CCCe
Confidence 4667888888888886221 1 23568999999999988775321100 0011223444444432 3677
Q ss_pred EEEecCCCCHHHHHHHHHcCcCEEEEc
Q 015722 317 VFLDGGVRRGTDVFKALALGASGVFVG 343 (402)
Q Consensus 317 via~GGI~~g~dv~kal~lGAd~V~iG 343 (402)
++. ++.+.+++.++..+|+|.+.++
T Consensus 122 vi~--~v~t~ee~~~a~~~G~d~i~~~ 146 (221)
T PRK01130 122 LMA--DCSTLEEGLAAQKLGFDFIGTT 146 (221)
T ss_pred EEE--eCCCHHHHHHHHHcCCCEEEcC
Confidence 775 5789999999999999999775
No 289
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.31 E-value=0.015 Score=59.43 Aligned_cols=67 Identities=9% Similarity=0.177 Sum_probs=52.9
Q ss_pred HHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEc
Q 015722 271 EDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVG 343 (402)
Q Consensus 271 ~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iG 343 (402)
+.++.+.++|+|.|++....| .+....+.+.++++.++ +++|++ |+|.|.+++.+++.+|||+|.+|
T Consensus 156 ~~v~~lv~aGvDvI~iD~a~g----~~~~~~~~v~~ik~~~p-~~~vi~-g~V~T~e~a~~l~~aGaD~I~vG 222 (404)
T PRK06843 156 ERVEELVKAHVDILVIDSAHG----HSTRIIELVKKIKTKYP-NLDLIA-GNIVTKEAALDLISVGADCLKVG 222 (404)
T ss_pred HHHHHHHhcCCCEEEEECCCC----CChhHHHHHHHHHhhCC-CCcEEE-EecCCHHHHHHHHHcCCCEEEEC
Confidence 578889999999999864322 13455678888887763 466554 88999999999999999999877
No 290
>PRK06852 aldolase; Validated
Probab=96.30 E-value=0.08 Score=52.22 Aligned_cols=92 Identities=25% Similarity=0.286 Sum_probs=60.0
Q ss_pred HHHHHHccCccEEEE----e--c---cCHH----HHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeE
Q 015722 251 VKWLQTITSLPILVK----G--V---LTAE----DASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPV 317 (402)
Q Consensus 251 i~~lr~~~~~Pv~vK----~--~---~~~~----da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~v 317 (402)
+..-.+.|++|+++- + + ..++ -++.+.+.|||.|.+--.+ +.+....+.+.++.+.+ +++||
T Consensus 159 v~~ea~~~GlPll~~~yprG~~i~~~~~~~~ia~aaRiaaELGADIVKv~y~~----~~~~g~~e~f~~vv~~~-g~vpV 233 (304)
T PRK06852 159 IIYEAHKHGLIAVLWIYPRGKAVKDEKDPHLIAGAAGVAACLGADFVKVNYPK----KEGANPAELFKEAVLAA-GRTKV 233 (304)
T ss_pred HHHHHHHhCCcEEEEeeccCcccCCCccHHHHHHHHHHHHHHcCCEEEecCCC----cCCCCCHHHHHHHHHhC-CCCcE
Confidence 334445678998862 2 1 1222 2678899999999984321 01112346777777765 36999
Q ss_pred EEecCCCCH-HHHH----HHHH-cCcCEEEEchHHH
Q 015722 318 FLDGGVRRG-TDVF----KALA-LGASGVFVGRPVP 347 (402)
Q Consensus 318 ia~GGI~~g-~dv~----kal~-lGAd~V~iGr~~l 347 (402)
+..||=++. .|++ .++. .||.+|.+||=..
T Consensus 234 viaGG~k~~~~e~L~~v~~ai~~aGa~Gv~~GRNIf 269 (304)
T PRK06852 234 VCAGGSSTDPEEFLKQLYEQIHISGASGNATGRNIH 269 (304)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHcCCceeeechhhh
Confidence 999999863 3344 4666 8999999999543
No 291
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=96.29 E-value=0.068 Score=49.70 Aligned_cols=124 Identities=19% Similarity=0.306 Sum_probs=74.5
Q ss_pred eecCChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcC
Q 015722 164 YVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQID 243 (402)
Q Consensus 164 y~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 243 (402)
|...+.+.+.+-++.++++|++++++.+=.+ |
T Consensus 66 Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~------------------------------------------------d 97 (201)
T PF03932_consen 66 YSDEEIEIMKEDIRMLRELGADGFVFGALTE------------------------------------------------D 97 (201)
T ss_dssp --HHHHHHHHHHHHHHHHTT-SEEEE--BET------------------------------------------------T
T ss_pred CCHHHHHHHHHHHHHHHHcCCCeeEEEeECC------------------------------------------------C
Confidence 4344556777788888999999998733110 2
Q ss_pred CCccHHHHHHHHHcc-CccEEEEec----cCHHH-HHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeE
Q 015722 244 RSLNWKDVKWLQTIT-SLPILVKGV----LTAED-ASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPV 317 (402)
Q Consensus 244 ~~~~~~~i~~lr~~~-~~Pv~vK~~----~~~~d-a~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~v 317 (402)
...+.+.++.+.+.. +.|++.--. .+++. .+.+.+.|++.|-.|+ |. ......++.|.++.+..++++.|
T Consensus 98 g~iD~~~~~~Li~~a~~~~~tFHRAfD~~~d~~~al~~L~~lG~~rVLTSG--g~--~~a~~g~~~L~~lv~~a~~~i~I 173 (201)
T PF03932_consen 98 GEIDEEALEELIEAAGGMPVTFHRAFDEVPDPEEALEQLIELGFDRVLTSG--GA--PTALEGIENLKELVEQAKGRIEI 173 (201)
T ss_dssp SSB-HHHHHHHHHHHTTSEEEE-GGGGGSSTHHHHHHHHHHHT-SEEEEST--TS--SSTTTCHHHHHHHHHHHTTSSEE
T ss_pred CCcCHHHHHHHHHhcCCCeEEEeCcHHHhCCHHHHHHHHHhcCCCEEECCC--CC--CCHHHHHHHHHHHHHHcCCCcEE
Confidence 223445555555544 677776532 34444 4677899999997754 32 12233467777777776678999
Q ss_pred EEecCCCCHHHHHHHHH-cCcCEE
Q 015722 318 FLDGGVRRGTDVFKALA-LGASGV 340 (402)
Q Consensus 318 ia~GGI~~g~dv~kal~-lGAd~V 340 (402)
++-|||+ .+.+.+.++ +|+..+
T Consensus 174 m~GgGv~-~~nv~~l~~~tg~~~~ 196 (201)
T PF03932_consen 174 MPGGGVR-AENVPELVEETGVREI 196 (201)
T ss_dssp EEESS---TTTHHHHHHHHT-SEE
T ss_pred EecCCCC-HHHHHHHHHhhCCeEE
Confidence 9999998 667777777 788765
No 292
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=96.26 E-value=1.2 Score=43.63 Aligned_cols=107 Identities=17% Similarity=0.188 Sum_probs=75.3
Q ss_pred cCHHHHHHHH-HhCCcEEEEec---CcccCCCCCc--chHHHHHHHHHHhcCCCeEEEecCCCCH-HHHHHHHHcCcCEE
Q 015722 268 LTAEDASLAI-QYGAAGIIVSN---HGARQLDYVP--ATVMALEEVVQAAKGRVPVFLDGGVRRG-TDVFKALALGASGV 340 (402)
Q Consensus 268 ~~~~da~~a~-~aGad~I~vsn---~gg~~~d~~~--~~~~~l~~i~~~~~~~i~via~GGI~~g-~dv~kal~lGAd~V 340 (402)
.++++|+.-. +.|+|.+-++. ||-+ .+. -.++.|.+|.+.+ ++|+..=||=..+ +|+.|++.+|..=|
T Consensus 156 T~peeA~~Fv~~TgvD~LAvaiGt~HG~Y---~~~p~L~~~~L~~I~~~~--~iPLVLHGgSG~~~e~~~~ai~~Gi~Ki 230 (285)
T PRK07709 156 ADPAECKHLVEATGIDCLAPALGSVHGPY---KGEPNLGFAEMEQVRDFT--GVPLVLHGGTGIPTADIEKAISLGTSKI 230 (285)
T ss_pred CCHHHHHHHHHHhCCCEEEEeecccccCc---CCCCccCHHHHHHHHHHH--CCCEEEeCCCCCCHHHHHHHHHcCCeEE
Confidence 5788886654 68999999873 5543 233 3578899999888 7999999977666 77788999999999
Q ss_pred EEchHHHHhhhc-------CC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q 015722 341 FVGRPVPFSLAV-------DG------EAGVRKVLQMLRDEFELTMALSGCR 379 (402)
Q Consensus 341 ~iGr~~l~~~~~-------~G------~~gv~~~i~~l~~el~~~m~~~G~~ 379 (402)
-|+|-+-.+... .. ..-.....+.+++.++..|..+|..
T Consensus 231 Ni~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~a~~~~v~~~i~~~gs~ 282 (285)
T PRK07709 231 NVNTENQIEFTKAVREVLNKDQEVYDPRKFIGPGRDAIKATVIGKIREFGSN 282 (285)
T ss_pred EeChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999976443210 00 1223344556777777788887754
No 293
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=96.24 E-value=0.048 Score=54.50 Aligned_cols=75 Identities=24% Similarity=0.236 Sum_probs=50.2
Q ss_pred HHHHHHhCCcEEEEecCc---c-------cCC------CCCcchHHHHHHHHHHh-cCCCeEEEecCCCCHH-H----HH
Q 015722 273 ASLAIQYGAAGIIVSNHG---A-------RQL------DYVPATVMALEEVVQAA-KGRVPVFLDGGVRRGT-D----VF 330 (402)
Q Consensus 273 a~~a~~aGad~I~vsn~g---g-------~~~------d~~~~~~~~l~~i~~~~-~~~i~via~GGI~~g~-d----v~ 330 (402)
++.+.+.|||.|.+--.| + ... ..--...+.+..+.+.+ .+++||+.+||=...+ | +.
T Consensus 223 aRiaaELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~ag~vpVviAGG~k~~~~e~L~~v~ 302 (348)
T PRK09250 223 NHLAATIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMGRRGLINSGGASKGEDDLLDAVR 302 (348)
T ss_pred HHHHHHHcCCEEEecCCCChhhHHHhhcccccccccccccccchHHHHHHHHHhhccCCceEEEeCCCCCCHHHHHHHHH
Confidence 678899999999985322 1 000 00112345566666665 4579999999999643 3 34
Q ss_pred HH---HHcCcCEEEEchHHH
Q 015722 331 KA---LALGASGVFVGRPVP 347 (402)
Q Consensus 331 ka---l~lGAd~V~iGr~~l 347 (402)
.+ +..||.+|.+||=..
T Consensus 303 ~a~~~i~aGa~Gv~iGRNIf 322 (348)
T PRK09250 303 TAVINKRAGGMGLIIGRKAF 322 (348)
T ss_pred HHHHhhhcCCcchhhchhhh
Confidence 56 778999999999544
No 294
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=96.23 E-value=0.05 Score=52.62 Aligned_cols=90 Identities=21% Similarity=0.242 Sum_probs=68.6
Q ss_pred cHH-HHHHHHHccCc-cEEEEeccCHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHH--hcCCCeEEEecC
Q 015722 247 NWK-DVKWLQTITSL-PILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQA--AKGRVPVFLDGG 322 (402)
Q Consensus 247 ~~~-~i~~lr~~~~~-Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~--~~~~i~via~GG 322 (402)
+|+ .++.+|+..+. +-+-=.+-+.++++.|.++|+|.|.+.|- +.+.+.++.+. .++++-+=++||
T Consensus 173 ~i~~Av~~aR~~~~~~~kIEVEvesle~~~eAl~agaDiImLDNm----------~~e~~~~av~~l~~~~~~~lEaSGg 242 (280)
T COG0157 173 SITEAVRRARAAAPFTKKIEVEVESLEEAEEALEAGADIIMLDNM----------SPEELKEAVKLLGLAGRALLEASGG 242 (280)
T ss_pred cHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHcCCCEEEecCC----------CHHHHHHHHHHhccCCceEEEEeCC
Confidence 343 48888887543 21222468999999999999999999884 22455555555 455788999999
Q ss_pred CCCHHHHHHHHHcCcCEEEEchHHH
Q 015722 323 VRRGTDVFKALALGASGVFVGRPVP 347 (402)
Q Consensus 323 I~~g~dv~kal~lGAd~V~iGr~~l 347 (402)
|. .+.+..+..+|.|.+.+|.+..
T Consensus 243 It-~~ni~~yA~tGVD~IS~galth 266 (280)
T COG0157 243 IT-LENIREYAETGVDVISVGALTH 266 (280)
T ss_pred CC-HHHHHHHhhcCCCEEEeCcccc
Confidence 97 8899999999999999998654
No 295
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=96.22 E-value=1.4 Score=43.36 Aligned_cols=110 Identities=18% Similarity=0.266 Sum_probs=75.1
Q ss_pred cCHHHHHH-HHHhCCcEEEEec---CcccCCCCCcc--hHHHHHHHHHHhcCCCeEEEecCCCCHH-HHHHHHHcCcCEE
Q 015722 268 LTAEDASL-AIQYGAAGIIVSN---HGARQLDYVPA--TVMALEEVVQAAKGRVPVFLDGGVRRGT-DVFKALALGASGV 340 (402)
Q Consensus 268 ~~~~da~~-a~~aGad~I~vsn---~gg~~~d~~~~--~~~~l~~i~~~~~~~i~via~GGI~~g~-dv~kal~lGAd~V 340 (402)
.++++|+. ..+.|+|.+-++- ||.+... ..| .++.|.+|.+.++ ++|+..=||=..++ ++.|++.+|..=|
T Consensus 155 TdP~~a~~Fv~~TgvD~LAvaiGt~HG~y~~~-~~p~Ld~~~L~~I~~~~~-~iPLVlHGgSG~~~e~~~~ai~~Gi~Ki 232 (287)
T PF01116_consen 155 TDPEEAKEFVEETGVDALAVAIGTAHGMYKGG-KKPKLDFDRLKEIREAVP-DIPLVLHGGSGLPDEQIRKAIKNGISKI 232 (287)
T ss_dssp SSHHHHHHHHHHHTTSEEEE-SSSBSSSBSSS-SSTC--HHHHHHHHHHHH-TSEEEESSCTTS-HHHHHHHHHTTEEEE
T ss_pred cCHHHHHHHHHHhCCCEEEEecCccccccCCC-CCcccCHHHHHHHHHhcC-CCCEEEECCCCCCHHHHHHHHHcCceEE
Confidence 46788765 4689999999973 5644321 133 4788999999874 69999988766655 7889999999999
Q ss_pred EEchHHHHhhhc--------C-C----hHHHHHHHHHHHHHHHHHHHHhCCC
Q 015722 341 FVGRPVPFSLAV--------D-G----EAGVRKVLQMLRDEFELTMALSGCR 379 (402)
Q Consensus 341 ~iGr~~l~~~~~--------~-G----~~gv~~~i~~l~~el~~~m~~~G~~ 379 (402)
-++|-+..+... . + ..-.....+.+++.++..|..+|..
T Consensus 233 Ni~T~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~ 284 (287)
T PF01116_consen 233 NIGTELRRAFTDALREYLAENPDKYDPRKLMKAAKEAMKEVVKEKIRLFGSA 284 (287)
T ss_dssp EESHHHHHHHHHHHHHHHHHSTTEHSHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred EEehHHHHHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999976554311 0 0 1223445556777777888888764
No 296
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=96.22 E-value=0.21 Score=46.72 Aligned_cols=90 Identities=13% Similarity=0.128 Sum_probs=58.7
Q ss_pred HHHHHHHHccCccEEE---Eec--------cCHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeE
Q 015722 249 KDVKWLQTITSLPILV---KGV--------LTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPV 317 (402)
Q Consensus 249 ~~i~~lr~~~~~Pv~v---K~~--------~~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~v 317 (402)
+.++++++.+++|++. |.. .+.++++.+.++|+|.|.+.....+ ...+....+.+..+++.. ++++
T Consensus 50 ~~~~~i~~~~~iPil~~~~~~~~~~~~~ig~~~~~~~~a~~aGad~I~~~~~~~~-~p~~~~~~~~i~~~~~~g--~~~i 126 (219)
T cd04729 50 EDIRAIRARVDLPIIGLIKRDYPDSEVYITPTIEEVDALAAAGADIIALDATDRP-RPDGETLAELIKRIHEEY--NCLL 126 (219)
T ss_pred HHHHHHHHhCCCCEEEEEecCCCCCCceeCCCHHHHHHHHHcCCCEEEEeCCCCC-CCCCcCHHHHHHHHHHHh--CCeE
Confidence 4567777767888863 222 2346889999999998777432110 001112334555555443 5777
Q ss_pred EEecCCCCHHHHHHHHHcCcCEEEEc
Q 015722 318 FLDGGVRRGTDVFKALALGASGVFVG 343 (402)
Q Consensus 318 ia~GGI~~g~dv~kal~lGAd~V~iG 343 (402)
++ ++.|.+++.++..+|+|.+.+.
T Consensus 127 iv--~v~t~~ea~~a~~~G~d~i~~~ 150 (219)
T cd04729 127 MA--DISTLEEALNAAKLGFDIIGTT 150 (219)
T ss_pred EE--ECCCHHHHHHHHHcCCCEEEcc
Confidence 76 6899999999999999998764
No 297
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=96.21 E-value=0.27 Score=46.64 Aligned_cols=95 Identities=9% Similarity=-0.025 Sum_probs=56.9
Q ss_pred HHHHHHHHccCccEEEEe----ccCHHHHHHHHHhCCcEEEEec--CcccCCCCCcchHHHHHHHHHHhc---CCCeEEE
Q 015722 249 KDVKWLQTITSLPILVKG----VLTAEDASLAIQYGAAGIIVSN--HGARQLDYVPATVMALEEVVQAAK---GRVPVFL 319 (402)
Q Consensus 249 ~~i~~lr~~~~~Pv~vK~----~~~~~da~~a~~aGad~I~vsn--~gg~~~d~~~~~~~~l~~i~~~~~---~~i~via 319 (402)
+.++++|+. +.++-+.. ....+..+..++. +|.|.+-. -|......-+..++-+.++++... .++.|-+
T Consensus 107 ~~l~~Ik~~-g~~~kaGlalnP~Tp~~~i~~~l~~-vD~VLiMtV~PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeV 184 (228)
T PRK08091 107 LTIEWLAKQ-KTTVLIGLCLCPETPISLLEPYLDQ-IDLIQILTLDPRTGTKAPSDLILDRVIQVENRLGNRRVEKLISI 184 (228)
T ss_pred HHHHHHHHC-CCCceEEEEECCCCCHHHHHHHHhh-cCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEE
Confidence 446677664 33222222 2345666655553 78777632 221111122334555555554432 2577999
Q ss_pred ecCCCCHHHHHHHHHcCcCEEEEchHH
Q 015722 320 DGGVRRGTDVFKALALGASGVFVGRPV 346 (402)
Q Consensus 320 ~GGI~~g~dv~kal~lGAd~V~iGr~~ 346 (402)
||||+ .+-+.++.++|||.+.+|+.+
T Consensus 185 DGGI~-~~ti~~l~~aGaD~~V~GSal 210 (228)
T PRK08091 185 DGSMT-LELASYLKQHQIDWVVSGSAL 210 (228)
T ss_pred ECCCC-HHHHHHHHHCCCCEEEEChhh
Confidence 99998 778889999999999999984
No 298
>KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism]
Probab=96.20 E-value=0.04 Score=51.19 Aligned_cols=98 Identities=18% Similarity=0.203 Sum_probs=69.2
Q ss_pred cHHHHHHHHHccC-ccEEEEeccCHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCC
Q 015722 247 NWKDVKWLQTITS-LPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRR 325 (402)
Q Consensus 247 ~~~~i~~lr~~~~-~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~ 325 (402)
..+.+-.+.+..+ -|++ .+.+.++.+++++.|+.-|-|.|+.-.....-.++ ...+.+-.+.++-+++-+||.|
T Consensus 174 ~lk~l~k~~K~L~me~LV--EVn~~eEm~raleiGakvvGvNNRnL~sFeVDlst---TskL~E~i~kDvilva~SGi~t 248 (289)
T KOG4201|consen 174 LLKELYKISKDLGMEPLV--EVNDEEEMQRALEIGAKVVGVNNRNLHSFEVDLST---TSKLLEGIPKDVILVALSGIFT 248 (289)
T ss_pred HHHHHHHHHHHcCCccee--eeccHHHHHHHHHhCcEEEeecCCccceeeechhh---HHHHHhhCccceEEEeccCCCC
Confidence 3444555555444 3443 46788999999999999998887532222222222 2333334555788999999999
Q ss_pred HHHHHHHHHcCcCEEEEchHHHHh
Q 015722 326 GTDVFKALALGASGVFVGRPVPFS 349 (402)
Q Consensus 326 g~dv~kal~lGAd~V~iGr~~l~~ 349 (402)
++|+.++-..|..+|.+|..++..
T Consensus 249 pdDia~~q~~GV~avLVGEslmk~ 272 (289)
T KOG4201|consen 249 PDDIAKYQKAGVKAVLVGESLMKQ 272 (289)
T ss_pred HHHHHHHHHcCceEEEecHHHHhc
Confidence 999999999999999999998864
No 299
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=96.20 E-value=0.049 Score=50.84 Aligned_cols=80 Identities=21% Similarity=0.195 Sum_probs=57.4
Q ss_pred HHHHHHHHHccCcc--EEEEeccCHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCC
Q 015722 248 WKDVKWLQTITSLP--ILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRR 325 (402)
Q Consensus 248 ~~~i~~lr~~~~~P--v~vK~~~~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~ 325 (402)
.+.++.+++..+.+ |.+..+.+.++++.+.++|+|+++..+ ...+.+ +.+... +++++.. ..|
T Consensus 49 ~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivsp~----------~~~~v~-~~~~~~--~~~~~~G--~~t 113 (206)
T PRK09140 49 FDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVTPN----------TDPEVI-RRAVAL--GMVVMPG--VAT 113 (206)
T ss_pred HHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEECCC----------CCHHHH-HHHHHC--CCcEEcc--cCC
Confidence 35688888887544 444567899999999999999997521 112222 222222 4555553 999
Q ss_pred HHHHHHHHHcCcCEEEE
Q 015722 326 GTDVFKALALGASGVFV 342 (402)
Q Consensus 326 g~dv~kal~lGAd~V~i 342 (402)
.+++.++..+|||.|.+
T Consensus 114 ~~E~~~A~~~Gad~vk~ 130 (206)
T PRK09140 114 PTEAFAALRAGAQALKL 130 (206)
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 99999999999999997
No 300
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=96.18 E-value=1.4 Score=43.18 Aligned_cols=108 Identities=20% Similarity=0.302 Sum_probs=76.3
Q ss_pred cCHHHHHHHH-HhCCcEEEEec---CcccCCCCCc--chHHHHHHHHHHhcCCCeEEEecCCCCH-HHHHHHHHcCcCEE
Q 015722 268 LTAEDASLAI-QYGAAGIIVSN---HGARQLDYVP--ATVMALEEVVQAAKGRVPVFLDGGVRRG-TDVFKALALGASGV 340 (402)
Q Consensus 268 ~~~~da~~a~-~aGad~I~vsn---~gg~~~d~~~--~~~~~l~~i~~~~~~~i~via~GGI~~g-~dv~kal~lGAd~V 340 (402)
.++++|+.-. +.|+|.+-++. ||.+. ..| -.++.|.+|.+.+ ++|+..=||=..+ +++.+++..|..=|
T Consensus 158 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~--~~p~~Ld~~~L~~I~~~v--~vPLVlHGgSG~~~e~~~~ai~~Gi~Ki 233 (288)
T TIGR00167 158 TDPEEAKEFVKLTGVDSLAAAIGNVHGVYK--GEPKGLDFERLEEIQKYV--NLPLVLHGGSGIPDEEIKKAISLGVVKV 233 (288)
T ss_pred CCHHHHHHHHhccCCcEEeeccCccccccC--CCCCccCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEE
Confidence 5678887655 57999999873 55442 223 3678999999988 7999999987777 57888999999999
Q ss_pred EEchHHHHhhhc-------CC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q 015722 341 FVGRPVPFSLAV-------DG------EAGVRKVLQMLRDEFELTMALSGCR 379 (402)
Q Consensus 341 ~iGr~~l~~~~~-------~G------~~gv~~~i~~l~~el~~~m~~~G~~ 379 (402)
-|+|-+..+... .. ..-.....+.+++.++..|..+|..
T Consensus 234 Ni~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 285 (288)
T TIGR00167 234 NIDTELQIAFAAAVRNYYAENKDYYDPRVWLRPGEKAMKEVVLEKIKLFGSA 285 (288)
T ss_pred EcChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999976443210 00 1223344556677777777777754
No 301
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=96.16 E-value=0.034 Score=55.09 Aligned_cols=90 Identities=19% Similarity=0.373 Sum_probs=61.1
Q ss_pred cCCCceEEEEeecCC--hhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCc
Q 015722 154 TGPGIRFFQLYVTKH--RNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDD 231 (402)
Q Consensus 154 ~~~~~~~~QLy~~~d--~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~ 231 (402)
..+.|..+.+-.+.+ .+.+.+++++++++|+++|.||.-++.- .
T Consensus 120 ~~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q---------~------------------------- 165 (309)
T PF01207_consen 120 AVPIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHGRTRKQ---------R------------------------- 165 (309)
T ss_dssp H-SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEECS-TTC---------C-------------------------
T ss_pred ccccceEEecccccccchhHHHHHHHHhhhcccceEEEecCchhh---------c-------------------------
Confidence 344566777766555 6778999999999999999887643320 0
Q ss_pred hhhHHHhhhhcCCCccHHHHHHHHHccCccEEEEe-ccCHHHHHHHHHh-CCcEEEEe
Q 015722 232 SGLASYVANQIDRSLNWKDVKWLQTITSLPILVKG-VLTAEDASLAIQY-GAAGIIVS 287 (402)
Q Consensus 232 ~~~~~~~~~~~d~~~~~~~i~~lr~~~~~Pv~vK~-~~~~~da~~a~~a-Gad~I~vs 287 (402)
......|+.++++++.+++||+.=| +.+.+|++...+. |+|+|.+.
T Consensus 166 ----------~~~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~tg~dgvMig 213 (309)
T PF01207_consen 166 ----------YKGPADWEAIAEIKEALPIPVIANGDIFSPEDAERMLEQTGADGVMIG 213 (309)
T ss_dssp ----------CTS---HHHHHHCHHC-TSEEEEESS--SHHHHHHHCCCH-SSEEEES
T ss_pred ----------CCcccchHHHHHHhhcccceeEEcCccCCHHHHHHHHHhcCCcEEEEc
Confidence 1123589999999999999999865 6899999988766 99999984
No 302
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=96.09 E-value=0.11 Score=50.44 Aligned_cols=41 Identities=20% Similarity=0.319 Sum_probs=35.8
Q ss_pred HHHHHHHHHccCccEEEEe-ccCHHHHHHHHHhCCcEEEEec
Q 015722 248 WKDVKWLQTITSLPILVKG-VLTAEDASLAIQYGAAGIIVSN 288 (402)
Q Consensus 248 ~~~i~~lr~~~~~Pv~vK~-~~~~~da~~a~~aGad~I~vsn 288 (402)
.+.++.+|+.++.|+.+.. +.++++++.+.++|||+++|..
T Consensus 191 ~~~i~~ir~~t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGS 232 (263)
T CHL00200 191 KKLIETIKKMTNKPIILGFGISTSEQIKQIKGWNINGIVIGS 232 (263)
T ss_pred HHHHHHHHHhcCCCEEEECCcCCHHHHHHHHhcCCCEEEECH
Confidence 3668999999999999984 5779999999999999999953
No 303
>PRK14057 epimerase; Provisional
Probab=96.07 E-value=0.38 Score=46.32 Aligned_cols=78 Identities=12% Similarity=0.047 Sum_probs=48.4
Q ss_pred cCHHHHHHHHHhCCcEEEEe--cCcccCCCCCcchHHHHHHHHHHhc---CCCeEEEecCCCCHHHHHHHHHcCcCEEEE
Q 015722 268 LTAEDASLAIQYGAAGIIVS--NHGARQLDYVPATVMALEEVVQAAK---GRVPVFLDGGVRRGTDVFKALALGASGVFV 342 (402)
Q Consensus 268 ~~~~da~~a~~aGad~I~vs--n~gg~~~d~~~~~~~~l~~i~~~~~---~~i~via~GGI~~g~dv~kal~lGAd~V~i 342 (402)
...+..+..++. +|.|.+= +-|......-+..++-+.++++... .++.|-+||||. .+-+.++.++|||.+..
T Consensus 143 Tp~e~i~~~l~~-vD~VLvMtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~ti~~l~~aGad~~V~ 220 (254)
T PRK14057 143 TPLDVIIPILSD-VEVIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLT-QDQLPSLIAQGIDRVVS 220 (254)
T ss_pred CCHHHHHHHHHh-CCEEEEEEECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHHHHCCCCEEEE
Confidence 345566655543 7777653 2121111122334444555444332 257899999998 66888999999999999
Q ss_pred chHHH
Q 015722 343 GRPVP 347 (402)
Q Consensus 343 Gr~~l 347 (402)
|+.+.
T Consensus 221 GSalF 225 (254)
T PRK14057 221 GSALF 225 (254)
T ss_pred ChHhh
Confidence 98753
No 304
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=96.03 E-value=0.91 Score=44.54 Aligned_cols=194 Identities=16% Similarity=0.064 Sum_probs=107.0
Q ss_pred eeecccccccccCChhhHHHHHHHHHc---------CCeEEe-cCCc-----------cCCHHHHh-------hcCCCce
Q 015722 108 IMIAPTAFQKMAHPEGECATARAASAA---------GTIMTL-SSWA-----------TSSVEEVS-------STGPGIR 159 (402)
Q Consensus 108 i~iAPm~~~~~~~~~ge~ala~aa~~~---------G~~~~v-s~~~-----------~~s~eei~-------~~~~~~~ 159 (402)
.++.|-.. |...|+.+.++ |...+- |+.. ..+++|+. ....-|.
T Consensus 10 ~l~~p~~~--------D~~SA~~~e~~~~~~~~~~~Gf~ai~~ss~~~a~s~G~pD~~~~~~~e~~~~~~~I~~a~~~Pv 81 (285)
T TIGR02320 10 LERLMEAH--------NGLSALIAEEARVEVGGESLGFDGIWSSSLTDSTSRGVPDIEEASWTQRLDVVEFMFDVTTKPI 81 (285)
T ss_pred CEEEecCc--------CHHHHHHHHHhhhcccCcCCCcCEEEechHHHHHHCCCCCcCcCCHHHHHHHHHHHHhhcCCCE
Confidence 55666544 44678888888 866443 3321 12444433 2233455
Q ss_pred EEEEeecCChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhh
Q 015722 160 FFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVA 239 (402)
Q Consensus 160 ~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (402)
.+-.-...+...+.+.+++..++|+.+|.|. |.. ..+| .++ +.. .+....+
T Consensus 82 ~~D~d~Gg~~~~v~r~V~~l~~aGvaGi~iE-Dq~-~pk~-----cg~-~~~--------------------~~~~~l~- 132 (285)
T TIGR02320 82 ILDGDTGGNFEHFRRLVRKLERRGVSAVCIE-DKL-GLKK-----NSL-FGN--------------------DVAQPQA- 132 (285)
T ss_pred EEecCCCCCHHHHHHHHHHHHHcCCeEEEEe-ccC-CCcc-----ccc-cCC--------------------CCccccc-
Confidence 5555445677888899999999999998763 221 1110 110 000 0000000
Q ss_pred hhcCCCccHHHHHHHHHc-c--CccEEEE----e-ccCHHH----HHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHH
Q 015722 240 NQIDRSLNWKDVKWLQTI-T--SLPILVK----G-VLTAED----ASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEV 307 (402)
Q Consensus 240 ~~~d~~~~~~~i~~lr~~-~--~~Pv~vK----~-~~~~~d----a~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i 307 (402)
+...-.+.|+..++. . +++|+.. . ....++ ++...++|||+|.+- + ++.+.+.+.++
T Consensus 133 ---s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~--~------~~~~~~ei~~~ 201 (285)
T TIGR02320 133 ---SVEEFCGKIRAGKDAQTTEDFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMIH--S------RKKDPDEILEF 201 (285)
T ss_pred ---CHHHHHHHHHHHHHhccCCCeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEec--C------CCCCHHHHHHH
Confidence 111112345555543 2 4566655 1 123333 567889999999983 2 13556677777
Q ss_pred HHHhcC---CCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHHHh
Q 015722 308 VQAAKG---RVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFS 349 (402)
Q Consensus 308 ~~~~~~---~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~~ 349 (402)
.+.++. ++|+++..+-.-...+.+.-.+|.+.|..|..++++
T Consensus 202 ~~~~~~~~p~~pl~~~~~~~~~~~~~eL~~lG~~~v~~~~~~~~a 246 (285)
T TIGR02320 202 ARRFRNHYPRTPLVIVPTSYYTTPTDEFRDAGISVVIYANHLLRA 246 (285)
T ss_pred HHHhhhhCCCCCEEEecCCCCCCCHHHHHHcCCCEEEEhHHHHHH
Confidence 776643 568876543111224555666899999999877664
No 305
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=95.99 E-value=0.06 Score=51.16 Aligned_cols=84 Identities=17% Similarity=0.055 Sum_probs=59.5
Q ss_pred CceEEEEeecCChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHH
Q 015722 157 GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLAS 236 (402)
Q Consensus 157 ~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (402)
.|.++.+-+..+...+.++.++++++|+++|.| |+-. |
T Consensus 135 ~PVsvKiR~~~~~~~~~~~a~~l~~aGad~i~V--d~~~--------------~-------------------------- 172 (231)
T TIGR00736 135 KPIFVKIRGNCIPLDELIDALNLVDDGFDGIHV--DAMY--------------P-------------------------- 172 (231)
T ss_pred CcEEEEeCCCCCcchHHHHHHHHHHcCCCEEEE--eeCC--------------C--------------------------
Confidence 456677665444445567777888888888755 3210 0
Q ss_pred HhhhhcCCCccHHHHHHHHHccC-ccEEEE-eccCHHHHHHHHHhCCcEEEEe
Q 015722 237 YVANQIDRSLNWKDVKWLQTITS-LPILVK-GVLTAEDASLAIQYGAAGIIVS 287 (402)
Q Consensus 237 ~~~~~~d~~~~~~~i~~lr~~~~-~Pv~vK-~~~~~~da~~a~~aGad~I~vs 287 (402)
..+...|+.|+.+++.++ +||+.= ++.+.+|++..+++|||+|.+.
T Consensus 173 -----g~~~a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~~GAd~Vmvg 220 (231)
T TIGR00736 173 -----GKPYADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLKAGADFVSVA 220 (231)
T ss_pred -----CCchhhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHHhCCCeEEEc
Confidence 011136899999999984 998764 4689999999999999999984
No 306
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=95.98 E-value=1 Score=45.05 Aligned_cols=233 Identities=16% Similarity=0.153 Sum_probs=116.0
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCeEEecCCccCCHHHHhhcC-CC-ce-----E-----EEEe--ecCChhHH
Q 015722 107 PIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTG-PG-IR-----F-----FQLY--VTKHRNVD 172 (402)
Q Consensus 107 Pi~iAPm~~~~~~~~~ge~ala~aa~~~G~~~~vs~~~~~s~eei~~~~-~~-~~-----~-----~QLy--~~~d~~~~ 172 (402)
|++||=+|..--.+-+--..+.++|+++|+-.+= +-....+++.... +. .+ | +.+| ..-+.+..
T Consensus 1 ~~iIAEig~NH~Gdl~~A~~lI~~A~~aGadaVK--fQt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~ 78 (329)
T TIGR03569 1 TFIIAEAGVNHNGSLELAKKLVDAAAEAGADAVK--FQTFKAEDLVSKNAPKAEYQKINTGAEESQLEMLKKLELSEEDH 78 (329)
T ss_pred CEEEEEeCCCccCcHHHHHHHHHHHHHhCCCEEE--eeeCCHHHhhCcccccccccccCCcCCCcHHHHHHHhCCCHHHH
Confidence 6778877654211112224778899999976432 1123444442211 11 11 1 1111 01245667
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCC-ccccccccccccccCCCCCchhhHHHhhhhcCCC-ccHHH
Q 015722 173 AQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPP-HLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRS-LNWKD 250 (402)
Q Consensus 173 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~ 250 (402)
..+.+.+++.|...+. +|. ..+.-|+...+.+|. |+ ...+ ..+..
T Consensus 79 ~~L~~~~~~~Gi~~~s----tpf-d~~svd~l~~~~v~~~KI----------------------------aS~~~~n~pL 125 (329)
T TIGR03569 79 RELKEYCESKGIEFLS----TPF-DLESADFLEDLGVPRFKI----------------------------PSGEITNAPL 125 (329)
T ss_pred HHHHHHHHHhCCcEEE----EeC-CHHHHHHHHhcCCCEEEE----------------------------CcccccCHHH
Confidence 7788888888887764 222 112222222222221 00 0111 24567
Q ss_pred HHHHHHccCccEEEEec-cCHHHHH----HHHHhCCc---EEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecC
Q 015722 251 VKWLQTITSLPILVKGV-LTAEDAS----LAIQYGAA---GIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGG 322 (402)
Q Consensus 251 i~~lr~~~~~Pv~vK~~-~~~~da~----~a~~aGad---~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GG 322 (402)
|+.+.+ ++.||+++.. .+.++.. .+.+.|.+ .+.+...-.+.-......+..++.+++.. .+||..++=
T Consensus 126 L~~~A~-~gkPvilStGmatl~Ei~~Av~~i~~~G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~~f--~~pVG~SdH 202 (329)
T TIGR03569 126 LKKIAR-FGKPVILSTGMATLEEIEAAVGVLRDAGTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKEAF--DLPVGYSDH 202 (329)
T ss_pred HHHHHh-cCCcEEEECCCCCHHHHHHHHHHHHHcCCCcCcEEEEEECCCCCCCcccCCHHHHHHHHHHh--CCCEEECCC
Confidence 787766 5899999954 5666543 34567875 33332211111111123456677777666 589988752
Q ss_pred CCCHHHHHHHHHcCcCEEEEchHHHHhhhcCChHH----HHHHHHHHHHHHHHHHHHhCCC
Q 015722 323 VRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAG----VRKVLQMLRDEFELTMALSGCR 379 (402)
Q Consensus 323 I~~g~dv~kal~lGAd~V~iGr~~l~~~~~~G~~g----v~~~i~~l~~el~~~m~~~G~~ 379 (402)
-..-.-.+.|.++||+ +|=+-|-.--...|.+. -.+-+..|.++++..-..+|..
T Consensus 203 t~G~~~~~aAvalGA~--iIEkH~tldk~~~G~D~~~Sl~p~el~~lv~~ir~~~~~lG~~ 261 (329)
T TIGR03569 203 TLGIEAPIAAVALGAT--VIEKHFTLDKNLPGPDHKASLEPDELKEMVQGIRNVEKALGDG 261 (329)
T ss_pred CccHHHHHHHHHcCCC--EEEeCCChhhcCCCCChhhcCCHHHHHHHHHHHHHHHHHcCCC
Confidence 2222344567789999 44443322112223211 0122456667777777777753
No 307
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=95.93 E-value=0.047 Score=52.69 Aligned_cols=40 Identities=33% Similarity=0.461 Sum_probs=35.9
Q ss_pred cHHHHHHHHHccCccEEEE-eccCHHHHHHHHHhCCcEEEEe
Q 015722 247 NWKDVKWLQTITSLPILVK-GVLTAEDASLAIQYGAAGIIVS 287 (402)
Q Consensus 247 ~~~~i~~lr~~~~~Pv~vK-~~~~~~da~~a~~aGad~I~vs 287 (402)
..+.++++|+.+++|+.+. |+.++++++.+.++ +|+++|.
T Consensus 193 ~~~~v~~vr~~~~~Pv~vGFGIs~~e~~~~v~~~-ADGVIVG 233 (265)
T COG0159 193 VKELVKRVRKYTDVPVLVGFGISSPEQAAQVAEA-ADGVIVG 233 (265)
T ss_pred HHHHHHHHHHhcCCCeEEecCcCCHHHHHHHHHh-CCeEEEc
Confidence 3467999999999999998 67999999999999 9999994
No 308
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=95.89 E-value=0.037 Score=58.81 Aligned_cols=76 Identities=18% Similarity=0.139 Sum_probs=59.1
Q ss_pred HHHHHHHHhCCcEEEEecCccc-C-CCCCcchHHHHHHHHHHhcCCCeEEEecCCCCH-----------HHHHHHHHcCc
Q 015722 271 EDASLAIQYGAAGIIVSNHGAR-Q-LDYVPATVMALEEVVQAAKGRVPVFLDGGVRRG-----------TDVFKALALGA 337 (402)
Q Consensus 271 ~da~~a~~aGad~I~vsn~gg~-~-~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g-----------~dv~kal~lGA 337 (402)
+.|+.-.+.|||-|.+-+--+. . ...-.+.++.+.++.+.+ .+|+-+-||||+- +++.++|.+||
T Consensus 271 e~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~--~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~~Ga 348 (538)
T PLN02617 271 ELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASENV--FVPLTVGGGIRDFTDANGRYYSSLEVASEYFRSGA 348 (538)
T ss_pred HHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhC--CCCEEEcCCccccccccccccchHHHHHHHHHcCC
Confidence 5578888999999998654221 1 112234578888888877 7999999999998 55899999999
Q ss_pred CEEEEchHHHH
Q 015722 338 SGVFVGRPVPF 348 (402)
Q Consensus 338 d~V~iGr~~l~ 348 (402)
|-|.||+..+.
T Consensus 349 dkV~i~s~Av~ 359 (538)
T PLN02617 349 DKISIGSDAVY 359 (538)
T ss_pred CEEEEChHHHh
Confidence 99999997665
No 309
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=95.89 E-value=0.03 Score=58.34 Aligned_cols=68 Identities=18% Similarity=0.287 Sum_probs=54.9
Q ss_pred HHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEc
Q 015722 270 AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVG 343 (402)
Q Consensus 270 ~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iG 343 (402)
.+.++.+.++|+|.|.|...-|. ....++.+.++++.+ .++||++ |+|-|.+++..++.+|||+|-+|
T Consensus 226 ~~r~~~L~~aG~d~I~vd~a~g~----~~~~~~~i~~i~~~~-~~~~vi~-G~v~t~~~a~~l~~aGad~i~vg 293 (450)
T TIGR01302 226 KERAEALVKAGVDVIVIDSSHGH----SIYVIDSIKEIKKTY-PDLDIIA-GNVATAEQAKALIDAGADGLRVG 293 (450)
T ss_pred HHHHHHHHHhCCCEEEEECCCCc----HhHHHHHHHHHHHhC-CCCCEEE-EeCCCHHHHHHHHHhCCCEEEEC
Confidence 35678889999999999763221 245667888888765 3789998 99999999999999999999776
No 310
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=95.89 E-value=2.1 Score=42.44 Aligned_cols=110 Identities=15% Similarity=0.158 Sum_probs=74.9
Q ss_pred cCHHHHHHHH-HhCCcEEEEec---CcccCCCCC-cchHHHHHHHHHHhcCCCeEEEecCCCCHH---------------
Q 015722 268 LTAEDASLAI-QYGAAGIIVSN---HGARQLDYV-PATVMALEEVVQAAKGRVPVFLDGGVRRGT--------------- 327 (402)
Q Consensus 268 ~~~~da~~a~-~aGad~I~vsn---~gg~~~d~~-~~~~~~l~~i~~~~~~~i~via~GGI~~g~--------------- 327 (402)
.++++|+.-. +.|+|.+-++. ||-+...+. .-.++.|.+|++.+ ++|+..=||=..++
T Consensus 155 TdPeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~L~f~~L~~I~~~~--~iPLVLHGgSGip~e~~~~~~~~g~~~~~ 232 (307)
T PRK05835 155 VNPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLT--NIPLVLHGASAIPDDVRKSYLDAGGDLKG 232 (307)
T ss_pred CCHHHHHHHHHhhCCCEEEEccCccccccCCCCCCccCHHHHHHHHHHh--CCCEEEeCCCCCchHHhhhhhhhcccccc
Confidence 5788886654 67999998873 554321121 23578899999988 79999988766666
Q ss_pred -------HHHHHHHcCcCEEEEchHHHHhhhc-------CC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q 015722 328 -------DVFKALALGASGVFVGRPVPFSLAV-------DG------EAGVRKVLQMLRDEFELTMALSGCR 379 (402)
Q Consensus 328 -------dv~kal~lGAd~V~iGr~~l~~~~~-------~G------~~gv~~~i~~l~~el~~~m~~~G~~ 379 (402)
|+.|++.+|..=|-++|-+..+... .. ..-.....+.+++.++..|..+|..
T Consensus 233 ~~g~~~e~~~kai~~GI~KiNi~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 304 (307)
T PRK05835 233 SKGVPFEFLQESVKGGINKVNTDTDLRIAFIAEVRKVANEDKSQFDLRKFFSPAQLALKNVVKERMKLLGSA 304 (307)
T ss_pred ccCCCHHHHHHHHHcCceEEEeChHHHHHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 7999999999999999976544211 00 1123334455666677777777754
No 311
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=95.88 E-value=0.06 Score=54.04 Aligned_cols=73 Identities=22% Similarity=0.228 Sum_probs=43.8
Q ss_pred HHHHH--HhCCcEEEEecCccc----CCCCC------cchHHHHHHHHHHhcCCCeEEE-ecCCCCHHHHHHH----HHc
Q 015722 273 ASLAI--QYGAAGIIVSNHGAR----QLDYV------PATVMALEEVVQAAKGRVPVFL-DGGVRRGTDVFKA----LAL 335 (402)
Q Consensus 273 a~~a~--~aGad~I~vsn~gg~----~~d~~------~~~~~~l~~i~~~~~~~i~via-~GGI~~g~dv~ka----l~l 335 (402)
++.+. +.|+|.+.+--.+.. ..+.+ ....+.+.++.+.. .+|++. +||+ +.+++++. +..
T Consensus 190 ~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~--~~P~vvlsgG~-~~~~f~~~l~~A~~a 266 (340)
T PRK12858 190 MEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDAT--DLPFIFLSAGV-SPELFRRTLEFACEA 266 (340)
T ss_pred HHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhC--CCCEEEECCCC-CHHHHHHHHHHHHHc
Confidence 45566 499999999532110 00111 11124456655554 577655 7777 66777654 457
Q ss_pred Cc--CEEEEchHHHH
Q 015722 336 GA--SGVFVGRPVPF 348 (402)
Q Consensus 336 GA--d~V~iGr~~l~ 348 (402)
|| .+|.+||....
T Consensus 267 Ga~f~Gvl~GRniwq 281 (340)
T PRK12858 267 GADFSGVLCGRATWQ 281 (340)
T ss_pred CCCccchhhhHHHHh
Confidence 99 99999997543
No 312
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.87 E-value=0.071 Score=50.01 Aligned_cols=81 Identities=20% Similarity=0.255 Sum_probs=59.9
Q ss_pred cHHHHHHHHHccC-ccEEEEeccCHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCC
Q 015722 247 NWKDVKWLQTITS-LPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRR 325 (402)
Q Consensus 247 ~~~~i~~lr~~~~-~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~ 325 (402)
..+.|+.+++..+ .-|....+.+.++++.+.++|+++++.-+ ...+.+..+.+ . .+|++ =|+.|
T Consensus 53 ~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~FivsP~----------~~~~vi~~a~~-~--~i~~i--PG~~T 117 (212)
T PRK05718 53 ALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVSPG----------LTPPLLKAAQE-G--PIPLI--PGVST 117 (212)
T ss_pred HHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEECCC----------CCHHHHHHHHH-c--CCCEe--CCCCC
Confidence 3467889988774 44555667899999999999999997632 11244554443 2 45555 47999
Q ss_pred HHHHHHHHHcCcCEEEE
Q 015722 326 GTDVFKALALGASGVFV 342 (402)
Q Consensus 326 g~dv~kal~lGAd~V~i 342 (402)
+.++.+++.+||+.|-+
T Consensus 118 ptEi~~a~~~Ga~~vKl 134 (212)
T PRK05718 118 PSELMLGMELGLRTFKF 134 (212)
T ss_pred HHHHHHHHHCCCCEEEE
Confidence 99999999999999887
No 313
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=95.86 E-value=2 Score=42.07 Aligned_cols=109 Identities=17% Similarity=0.228 Sum_probs=73.2
Q ss_pred cCHHHHHHH-HHhCCcEEEEec---CcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCC-HHHHHHHHHcCcCEEEE
Q 015722 268 LTAEDASLA-IQYGAAGIIVSN---HGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRR-GTDVFKALALGASGVFV 342 (402)
Q Consensus 268 ~~~~da~~a-~~aGad~I~vsn---~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~-g~dv~kal~lGAd~V~i 342 (402)
.++++|+.- .+.|+|.+-++. ||-+.. ...-.++.|.+|++.+ ++|+..=||=.. -+++.|++.+|..=|-|
T Consensus 153 T~peea~~Fv~~TgvD~LAvaiGt~HG~yk~-~p~Ldf~~L~~I~~~~--~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi 229 (282)
T TIGR01858 153 TDPQEAKEFVEATGVDSLAVAIGTAHGLYKK-TPKLDFDRLAEIREVV--DVPLVLHGASDVPDEDVRRTIELGICKVNV 229 (282)
T ss_pred CCHHHHHHHHHHHCcCEEecccCccccCcCC-CCccCHHHHHHHHHHh--CCCeEEecCCCCCHHHHHHHHHcCCeEEEe
Confidence 578887654 579999999873 554321 1123578899999988 789888775444 46677899999999999
Q ss_pred chHHHHhhhc-------CC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q 015722 343 GRPVPFSLAV-------DG------EAGVRKVLQMLRDEFELTMALSGCR 379 (402)
Q Consensus 343 Gr~~l~~~~~-------~G------~~gv~~~i~~l~~el~~~m~~~G~~ 379 (402)
+|-+..+... .. ..-.....+.+++-++..|+.+|..
T Consensus 230 ~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 279 (282)
T TIGR01858 230 ATELKIAFSGAVKAYFAENPQANDPRYYMRPGKDAMKKVVRNKINVCGSA 279 (282)
T ss_pred CcHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9976543211 00 1223344456677777777777754
No 314
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=95.85 E-value=0.11 Score=57.57 Aligned_cols=97 Identities=18% Similarity=0.161 Sum_probs=64.5
Q ss_pred ccCHHHHHHHH----Hh---CCcEEEEecCcccCCC-CC--cchHHHHHHHHHHhcC-CCeEEEecCCCCHHHHHHHHHc
Q 015722 267 VLTAEDASLAI----QY---GAAGIIVSNHGARQLD-YV--PATVMALEEVVQAAKG-RVPVFLDGGVRRGTDVFKALAL 335 (402)
Q Consensus 267 ~~~~~da~~a~----~a---Gad~I~vsn~gg~~~d-~~--~~~~~~l~~i~~~~~~-~i~via~GGI~~g~dv~kal~l 335 (402)
+.+.++++.+. .. |+|+|.++--..+.-. .. +..++.+.++++.+.. .+||++-||| +.+++.+++++
T Consensus 108 ~h~~~e~~~~~~~~~~~g~~gaDYi~~Gpvf~T~tK~~~~~~lG~~~l~~~~~~~~~~~iPv~AiGGI-~~~~~~~~~~~ 186 (755)
T PRK09517 108 IETLDQLEAVIAQCAETGVALPDVIGIGPVASTATKPDAPPALGVDGIAEIAAVAQDHGIASVAIGGV-GLRNAAELAAT 186 (755)
T ss_pred CCCHHHHHHHHhhhccCCCCCCCEEEECCccccCCCCCCCCCCCHHHHHHHHHhcCcCCCCEEEECCC-CHHHHHHHHHc
Confidence 35677765542 22 5999999743333211 21 2356788888877621 3999999999 59999999999
Q ss_pred CcCEEEEchHHHHhhhcCChHHHHHHHHHHHHHHH
Q 015722 336 GASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFE 370 (402)
Q Consensus 336 GAd~V~iGr~~l~~~~~~G~~gv~~~i~~l~~el~ 370 (402)
||++|.+-+.++.+ +.....++.+.+.+.
T Consensus 187 Ga~giAvisai~~a------~d~~~a~~~l~~~~~ 215 (755)
T PRK09517 187 GIDGLCVVSAIMAA------ANPAAAARELRTAFQ 215 (755)
T ss_pred CCCEEEEehHhhCC------CCHHHHHHHHHHHHH
Confidence 99999999988632 233344455544433
No 315
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=95.84 E-value=1.4 Score=43.29 Aligned_cols=182 Identities=16% Similarity=0.123 Sum_probs=107.0
Q ss_pred CceeecccccccccCChhhHHHHHHHHHcCCeEEe-----cCCccCCHHHHhh-------cCC--CceEEEEeecCChhH
Q 015722 106 MPIMIAPTAFQKMAHPEGECATARAASAAGTIMTL-----SSWATSSVEEVSS-------TGP--GIRFFQLYVTKHRNV 171 (402)
Q Consensus 106 ~Pi~iAPm~~~~~~~~~ge~ala~aa~~~G~~~~v-----s~~~~~s~eei~~-------~~~--~~~~~QLy~~~d~~~ 171 (402)
.|.++.|+.-.+-.+.++=..+.+-..+.|+...+ +++.+.|.+|..+ ... -+.+..+. ..+.+.
T Consensus 5 ~~a~~TPf~~dg~iD~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~-~~~t~~ 83 (294)
T TIGR02313 5 IAPLITPFKRNGDIDEEALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTG-ALNHDE 83 (294)
T ss_pred eeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECC-cchHHH
Confidence 56778888554445555556777777888875433 2334567766322 222 34555554 345566
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCCccHHHH
Q 015722 172 DAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDV 251 (402)
Q Consensus 172 ~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i 251 (402)
..++++.+++.|++++.+. .|.+ +++ +.+-..+..
T Consensus 84 ai~~a~~A~~~Gad~v~v~--pP~y------------~~~-------------------------------~~~~l~~~f 118 (294)
T TIGR02313 84 TLELTKFAEEAGADAAMVI--VPYY------------NKP-------------------------------NQEALYDHF 118 (294)
T ss_pred HHHHHHHHHHcCCCEEEEc--CccC------------CCC-------------------------------CHHHHHHHH
Confidence 6788889999999999873 2321 010 000122445
Q ss_pred HHHHHcc-CccEEEEec-------cCHHHHHHHHH--hCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEec
Q 015722 252 KWLQTIT-SLPILVKGV-------LTAEDASLAIQ--YGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDG 321 (402)
Q Consensus 252 ~~lr~~~-~~Pv~vK~~-------~~~~da~~a~~--aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~G 321 (402)
+.+.+.+ ++||++=.+ .+++...++.+ -.+-+|.-+. ..+..+.++.+..+++..|+. |
T Consensus 119 ~~ia~a~~~lpv~iYn~P~~tg~~l~~~~l~~L~~~~pnv~giK~ss----------~d~~~~~~~~~~~~~~~~v~~-G 187 (294)
T TIGR02313 119 AEVADAVPDFPIIIYNIPGRAAQEIAPKTMARLRKDCPNIVGAKESN----------KDFEHLNHLFLEAGRDFLLFC-G 187 (294)
T ss_pred HHHHHhccCCCEEEEeCchhcCcCCCHHHHHHHHhhCCCEEEEEeCC----------CCHHHHHHHHHhcCCCeEEEE-c
Confidence 6677777 789887643 45677777663 3444555432 133445555555444554443 3
Q ss_pred CCCCHHHHHHHHHcCcCEEEEchHHH
Q 015722 322 GVRRGTDVFKALALGASGVFVGRPVP 347 (402)
Q Consensus 322 GI~~g~dv~kal~lGAd~V~iGr~~l 347 (402)
.-..++.++.+||++++.|..-+
T Consensus 188 ---~d~~~~~~l~~Ga~G~is~~~n~ 210 (294)
T TIGR02313 188 ---IELLCLPMLAIGAAGSIAATANV 210 (294)
T ss_pred ---chHHHHHHHHCCCCEEEecHHhh
Confidence 23566778899999999988543
No 316
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.81 E-value=0.052 Score=51.22 Aligned_cols=80 Identities=21% Similarity=0.133 Sum_probs=55.0
Q ss_pred HHHHHHHHHcc-----CccEEEEeccCHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecC
Q 015722 248 WKDVKWLQTIT-----SLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGG 322 (402)
Q Consensus 248 ~~~i~~lr~~~-----~~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GG 322 (402)
.+.++.+++.+ ++-|.+..+++.++++.+.++|+++|+--+ ...+.+..+.+ . ++|++ =|
T Consensus 54 ~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~FiVsP~----------~~~~v~~~~~~-~--~i~~i--PG 118 (222)
T PRK07114 54 HEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANFIVTPL----------FNPDIAKVCNR-R--KVPYS--PG 118 (222)
T ss_pred HHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCEEECCC----------CCHHHHHHHHH-c--CCCEe--CC
Confidence 35566665432 244555678999999999999999986411 12233333332 2 45555 48
Q ss_pred CCCHHHHHHHHHcCcCEEEE
Q 015722 323 VRRGTDVFKALALGASGVFV 342 (402)
Q Consensus 323 I~~g~dv~kal~lGAd~V~i 342 (402)
+.|+.++..|+.+||+.|=+
T Consensus 119 ~~TpsEi~~A~~~Ga~~vKl 138 (222)
T PRK07114 119 CGSLSEIGYAEELGCEIVKL 138 (222)
T ss_pred CCCHHHHHHHHHCCCCEEEE
Confidence 99999999999999998854
No 317
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=95.81 E-value=0.039 Score=58.18 Aligned_cols=252 Identities=17% Similarity=0.228 Sum_probs=139.7
Q ss_pred hhhccccccccc-CCCCCCccceeec-CcccCCceeecccccccccCChhhHHHHHHHHHcCCeEEecCCccCCHHHHhh
Q 015722 76 AFSRILFRPRIL-RDVSKIDMTTTVL-GFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSS 153 (402)
Q Consensus 76 ~~~~~~l~pr~l-~~~~~~d~st~i~-G~~l~~Pi~iAPm~~~~~~~~~ge~ala~aa~~~G~~~~vs~~~~~s~eei~~ 153 (402)
.|||+.|+|..- ...+++|++|.+- +..++.||+.|||...+ |..||.+.++.|...+++. ++++|++.+
T Consensus 19 t~ddv~l~p~~~~~~~~~v~~~t~l~~~~~l~~Pii~a~M~~vt------~~~ma~a~a~~GglGvi~~--~~~~e~~~~ 90 (495)
T PTZ00314 19 TYDDVILLPGYIDFSRDDVDLSTRLTRNIRLKIPIVSSPMDTVT------EHKMAIAMALMGGIGVIHN--NCSIEEQVE 90 (495)
T ss_pred CccceEecccccccccccccccccccCCcccCCceeecCccccc------cHHHHHHHHHCCCeEEecC--CCCHHHHHH
Confidence 599999999865 3457889998876 56889999999997765 7799999999999999953 677776554
Q ss_pred cCC------CceEEEEeecCChhHHHHHHHHHHHcCCcEEEEecCCC----CCC-chhHHHhhhcCCCCcccccccccc-
Q 015722 154 TGP------GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTP----RLG-RREADIKNRFVLPPHLTLKNYEGL- 221 (402)
Q Consensus 154 ~~~------~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p----~~g-~r~~d~r~~~~~p~~~~~~~~~~~- 221 (402)
... .................++++..++.++..+.|+-+.. ..| ...+|++..- ........+...
T Consensus 91 ~v~kvk~~e~g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~--~~~~~V~diMt~~ 168 (495)
T PTZ00314 91 EVRKVKRFENGFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVK--DKSTPVSEVMTPR 168 (495)
T ss_pred HHhhccccccccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhcc--cCCCCHHHhhCCc
Confidence 211 00000111111223345566666778888887754310 011 1223432100 000000000000
Q ss_pred -ccccCCC-CCchhhHHHhhhh-------cC--C----CccHHHHHHHHHc------cCccEEEEec--cC---HHHHHH
Q 015722 222 -YIGKMDK-TDDSGLASYVANQ-------ID--R----SLNWKDVKWLQTI------TSLPILVKGV--LT---AEDASL 275 (402)
Q Consensus 222 -~~~~~~~-~~~~~~~~~~~~~-------~d--~----~~~~~~i~~lr~~------~~~Pv~vK~~--~~---~~da~~ 275 (402)
....... .....+.+.+... .+ . -.+.+++...... -...+.|... .. .+.++.
T Consensus 169 ~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~~~p~a~~D~~GrL~Vgaavg~~~~~~~~~~~ 248 (495)
T PTZ00314 169 EKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNRGYPNASLDSNGQLLVGAAISTRPEDIERAAA 248 (495)
T ss_pred CCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcccCchhhhccCCCEEEEEEECCCHHHHHHHHH
Confidence 0000000 0000000000000 00 0 0122232222111 1233444322 22 355788
Q ss_pred HHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEc
Q 015722 276 AIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVG 343 (402)
Q Consensus 276 a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iG 343 (402)
+.++|+|.|.+...-|+ ....++.+.++++..+ +++|++ |.|.|.+++.+++.+|||+|-+|
T Consensus 249 l~~ag~d~i~id~a~G~----s~~~~~~i~~ik~~~~-~~~v~a-G~V~t~~~a~~~~~aGad~I~vg 310 (495)
T PTZ00314 249 LIEAGVDVLVVDSSQGN----SIYQIDMIKKLKSNYP-HVDIIA-GNVVTADQAKNLIDAGADGLRIG 310 (495)
T ss_pred HHHCCCCEEEEecCCCC----chHHHHHHHHHHhhCC-CceEEE-CCcCCHHHHHHHHHcCCCEEEEC
Confidence 89999999999753222 1334778888888753 688888 99999999999999999999765
No 318
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=95.80 E-value=0.042 Score=51.60 Aligned_cols=97 Identities=20% Similarity=0.141 Sum_probs=56.9
Q ss_pred cCHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHH
Q 015722 268 LTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVP 347 (402)
Q Consensus 268 ~~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l 347 (402)
.+.++++...+.|.+-+++.-.---+.++..-..+.+..+++..+.+..+.++|||+ .+.+-+....|||.+.+|||+.
T Consensus 117 ~~~~~l~~~~~~~~~~~vl~~a~~~~~~G~v~s~~~~~~ir~~~~~~~~i~V~gGI~-~~~~~~~~~~~ad~~VvGr~I~ 195 (216)
T PRK13306 117 WTWEQAQQWRDAGISQVIYHRSRDAQLAGVAWGEKDLNKVKKLSDMGFKVSVTGGLV-VEDLKLFKGIPVKTFIAGRAIR 195 (216)
T ss_pred CCHHHHHHHHcCChhhhhhhhhhhhhhcCCCCCHHHHHHHHHHhcCCCeEEEcCCCC-HhhHHHHhcCCCCEEEECCccc
Confidence 445666655666655554421000123344444456666666654456699999999 3333334556999999999944
Q ss_pred HhhhcCChHHHHHHHHHHHHHHHH
Q 015722 348 FSLAVDGEAGVRKVLQMLRDEFEL 371 (402)
Q Consensus 348 ~~~~~~G~~gv~~~i~~l~~el~~ 371 (402)
.+ +...+.++.++++++.
T Consensus 196 ~a------~dp~~a~~~i~~~i~~ 213 (216)
T PRK13306 196 GA------ADPAAAARAFKDEIAK 213 (216)
T ss_pred CC------CCHHHHHHHHHHHHHh
Confidence 32 2244567777777644
No 319
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=95.80 E-value=2.1 Score=41.93 Aligned_cols=184 Identities=14% Similarity=0.062 Sum_probs=106.9
Q ss_pred CceeecccccccccCChhhHHHHHHHHHcCCeEEe--c---CCccCCHHHHhh-------cCC--CceEEEEeecCChhH
Q 015722 106 MPIMIAPTAFQKMAHPEGECATARAASAAGTIMTL--S---SWATSSVEEVSS-------TGP--GIRFFQLYVTKHRNV 171 (402)
Q Consensus 106 ~Pi~iAPm~~~~~~~~~ge~ala~aa~~~G~~~~v--s---~~~~~s~eei~~-------~~~--~~~~~QLy~~~d~~~ 171 (402)
.|.++.|+.-.+-.+.++-..+.+-..+.|+-..+ + ++.+.+.+|..+ ... -+.++++- .+.+.
T Consensus 10 ~~a~vTPf~~dg~iD~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~--~~t~~ 87 (296)
T TIGR03249 10 LSFPVTPFDADGSFDEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVG--GNTSD 87 (296)
T ss_pred EEeeeCCcCCCCCcCHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC--ccHHH
Confidence 46667777544445555566888888888975543 2 234567766322 222 35667764 35677
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCCccHHHH
Q 015722 172 DAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDV 251 (402)
Q Consensus 172 ~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i 251 (402)
..++++.++++|++++.+. .|.+ .+. + ..-..+..
T Consensus 88 ai~~a~~a~~~Gadav~~~--pP~y------------~~~--s-----------------------------~~~i~~~f 122 (296)
T TIGR03249 88 AIEIARLAEKAGADGYLLL--PPYL------------ING--E-----------------------------QEGLYAHV 122 (296)
T ss_pred HHHHHHHHHHhCCCEEEEC--CCCC------------CCC--C-----------------------------HHHHHHHH
Confidence 7788899999999999872 2321 000 0 00012345
Q ss_pred HHHHHccCccEEEEe----ccCHHHHHHHHH-h-CCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCC
Q 015722 252 KWLQTITSLPILVKG----VLTAEDASLAIQ-Y-GAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRR 325 (402)
Q Consensus 252 ~~lr~~~~~Pv~vK~----~~~~~da~~a~~-a-Gad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~ 325 (402)
+.+.+.+++|+++=. ..+++...++.+ . .+.+|.-+. ..+..+.++.+..+++..|+.-.+. .
T Consensus 123 ~~v~~a~~~pvilYn~~g~~l~~~~~~~La~~~~nvvgiKds~----------~d~~~~~~~~~~~~~~~~v~~G~~~-~ 191 (296)
T TIGR03249 123 EAVCESTDLGVIVYQRDNAVLNADTLERLADRCPNLVGFKDGI----------GDMEQMIEITQRLGDRLGYLGGMPT-A 191 (296)
T ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHhhCCCEEEEEeCC----------CCHHHHHHHHHHcCCCeEEEeCCCc-c
Confidence 666666788887642 256777777765 2 445555431 2444555565555445544432111 1
Q ss_pred HHHHHHHHHcCcCEEEEchHHH
Q 015722 326 GTDVFKALALGASGVFVGRPVP 347 (402)
Q Consensus 326 g~dv~kal~lGAd~V~iGr~~l 347 (402)
...++..+.+||++++.|..-+
T Consensus 192 d~~~~~~~~~Ga~G~is~~~n~ 213 (296)
T TIGR03249 192 EVTAPAYLPLGVTSYSSAIFNF 213 (296)
T ss_pred hhhHHHHHhCCCCEEEecHHHh
Confidence 3345778889999999887543
No 320
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=95.80 E-value=0.071 Score=50.64 Aligned_cols=73 Identities=30% Similarity=0.378 Sum_probs=59.8
Q ss_pred HHHHHHHHHhCCcEEEEecC-cccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHH
Q 015722 270 AEDASLAIQYGAAGIIVSNH-GARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPV 346 (402)
Q Consensus 270 ~~da~~a~~aGad~I~vsn~-gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~ 346 (402)
.+.|+.-.+.||..+.+-.- |. ..+++-..+.+.+|.+.+ ++||=.-||||+-+++.+.|.+|++-|.+|+.-
T Consensus 34 ~~~a~~~~~~Ga~~lHlVDLdgA--~~g~~~n~~~i~~i~~~~--~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt~a 107 (241)
T COG0106 34 LEVAKKWSDQGAEWLHLVDLDGA--KAGGPRNLEAIKEILEAT--DVPVQVGGGIRSLEDVEALLDAGVARVIIGTAA 107 (241)
T ss_pred HHHHHHHHHcCCcEEEEeecccc--ccCCcccHHHHHHHHHhC--CCCEEeeCCcCCHHHHHHHHHCCCCEEEEecce
Confidence 46678888899999987431 21 124466788999999988 899999999999999999999999999999943
No 321
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=95.73 E-value=0.13 Score=50.18 Aligned_cols=155 Identities=22% Similarity=0.204 Sum_probs=88.8
Q ss_pred CCceeecccccccccCChhhHHHHHHHHHcCCeEEecCCcc----C---------C----HHHHhhcCCCceEEEEeecC
Q 015722 105 SMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWAT----S---------S----VEEVSSTGPGIRFFQLYVTK 167 (402)
Q Consensus 105 ~~Pi~iAPm~~~~~~~~~ge~ala~aa~~~G~~~~vs~~~~----~---------s----~eei~~~~~~~~~~QLy~~~ 167 (402)
..|++++ +.+. .++.=...++.+.+.|+.++-=+.+. . . ++++++...-|.++.+-...
T Consensus 98 ~~pvi~s-i~g~---~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~ 173 (289)
T cd02810 98 GQPLIAS-VGGS---SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYF 173 (289)
T ss_pred CCeEEEE-eccC---CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCC
Confidence 4676654 3332 23323577888888887654311110 0 1 12233333456777876666
Q ss_pred ChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCCcc
Q 015722 168 HRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLN 247 (402)
Q Consensus 168 d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 247 (402)
+.+.+.++++.++++|+++|.++-..... ..+... ..|. .. . .....++ ..+ ....
T Consensus 174 ~~~~~~~~a~~l~~~Gad~i~~~~~~~~~---~~~~~~--~~~~---~~--------~-~~~g~sg--~~~-----~~~~ 229 (289)
T cd02810 174 DLEDIVELAKAAERAGADGLTAINTISGR---VVDLKT--VGPG---PK--------R-GTGGLSG--API-----RPLA 229 (289)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEcccCcc---ceeccc--Cccc---cC--------C-CCCccCc--HHH-----HHHH
Confidence 66678899999999999999886432210 000000 0000 00 0 0000001 011 1235
Q ss_pred HHHHHHHHHcc--CccEEEE-eccCHHHHHHHHHhCCcEEEEe
Q 015722 248 WKDVKWLQTIT--SLPILVK-GVLTAEDASLAIQYGAAGIIVS 287 (402)
Q Consensus 248 ~~~i~~lr~~~--~~Pv~vK-~~~~~~da~~a~~aGad~I~vs 287 (402)
++.++.+++.+ ++||+.= ++.+.+++..++++|||+|.+.
T Consensus 230 ~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd~V~vg 272 (289)
T cd02810 230 LRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAVQVA 272 (289)
T ss_pred HHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCccHheEc
Confidence 77899999988 7898765 4678999999999999999884
No 322
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=95.72 E-value=1.4 Score=42.78 Aligned_cols=183 Identities=19% Similarity=0.160 Sum_probs=106.7
Q ss_pred CceeecccccccccCChhhHHHHHHHHHcCCeEEe--c---CCccCCHHHHh-------hcCC--CceEEEEeecCChhH
Q 015722 106 MPIMIAPTAFQKMAHPEGECATARAASAAGTIMTL--S---SWATSSVEEVS-------STGP--GIRFFQLYVTKHRNV 171 (402)
Q Consensus 106 ~Pi~iAPm~~~~~~~~~ge~ala~aa~~~G~~~~v--s---~~~~~s~eei~-------~~~~--~~~~~QLy~~~d~~~ 171 (402)
.|..+.|+.-.+-.+.++-....+-+.+.|+...+ + +..+.+.+|.. +... -+.++++. ..+.+.
T Consensus 5 ~~~~~TPf~~dg~iD~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~-~~~~~~ 83 (284)
T cd00950 5 ITALVTPFKDDGSVDFDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTG-SNNTAE 83 (284)
T ss_pred eeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccC-CccHHH
Confidence 45667777544455666666888888888975443 2 22345666532 2222 34556654 346677
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCCccHHHH
Q 015722 172 DAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDV 251 (402)
Q Consensus 172 ~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i 251 (402)
..++++.|+++|++++.+. .|.. .+. ..+-..+..
T Consensus 84 ~~~~a~~a~~~G~d~v~~~--~P~~------------~~~-------------------------------~~~~l~~~~ 118 (284)
T cd00950 84 AIELTKRAEKAGADAALVV--TPYY------------NKP-------------------------------SQEGLYAHF 118 (284)
T ss_pred HHHHHHHHHHcCCCEEEEc--cccc------------CCC-------------------------------CHHHHHHHH
Confidence 7889999999999999873 2221 000 000122445
Q ss_pred HHHHHccCccEEEEec-------cCHHHHHHHHHh-CCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCC
Q 015722 252 KWLQTITSLPILVKGV-------LTAEDASLAIQY-GAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGV 323 (402)
Q Consensus 252 ~~lr~~~~~Pv~vK~~-------~~~~da~~a~~a-Gad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI 323 (402)
+.+.+.+++|+++=.. .+++..+++.+. .+-+|+-+. .....+.++.+..++++.|+. |.
T Consensus 119 ~~ia~~~~~pi~lYn~P~~~g~~ls~~~~~~L~~~p~v~giK~s~----------~~~~~~~~~~~~~~~~~~v~~-G~- 186 (284)
T cd00950 119 KAIAEATDLPVILYNVPGRTGVNIEPETVLRLAEHPNIVGIKEAT----------GDLDRVSELIALCPDDFAVLS-GD- 186 (284)
T ss_pred HHHHhcCCCCEEEEEChhHhCCCCCHHHHHHHhcCCCEEEEEECC----------CCHHHHHHHHHhCCCCeEEEe-CC-
Confidence 5666667788886532 566777666653 233444321 123455556555555565553 42
Q ss_pred CCHHHHHHHHHcCcCEEEEchHHHH
Q 015722 324 RRGTDVFKALALGASGVFVGRPVPF 348 (402)
Q Consensus 324 ~~g~dv~kal~lGAd~V~iGr~~l~ 348 (402)
...+..++.+|+++++.|...++
T Consensus 187 --d~~~~~~~~~G~~G~~s~~~n~~ 209 (284)
T cd00950 187 --DALTLPFLALGGVGVISVAANVA 209 (284)
T ss_pred --hHhHHHHHHCCCCEEEehHHHhh
Confidence 34567788999999998886443
No 323
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=95.68 E-value=0.29 Score=45.43 Aligned_cols=88 Identities=15% Similarity=0.139 Sum_probs=60.1
Q ss_pred cHHHHHHHHHccCccEE--EEe---------ccCHHHHHHHHHhCCcEEEEecCcccCCCCCcchHH-HHHHHHHHhcCC
Q 015722 247 NWKDVKWLQTITSLPIL--VKG---------VLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVM-ALEEVVQAAKGR 314 (402)
Q Consensus 247 ~~~~i~~lr~~~~~Pv~--vK~---------~~~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~-~l~~i~~~~~~~ 314 (402)
..++|+.+++.+++|++ +|- ..+.++...+.++|++-|-+..+-....++ +++ .+.+++ . +.
T Consensus 54 gv~dIkai~~~v~vPIIGIiKrd~~~s~v~ITptlkeVd~L~~~Ga~IIA~DaT~R~RP~~---~~~~~i~~~k--~-~~ 127 (229)
T COG3010 54 GVEDIKAIRAVVDVPIIGIIKRDYPDSPVRITPTLKEVDALAEAGADIIAFDATDRPRPDG---DLEELIARIK--Y-PG 127 (229)
T ss_pred chhhHHHHHhhCCCCeEEEEecCCCCCCceecccHHHHHHHHHCCCcEEEeecccCCCCcc---hHHHHHHHhh--c-CC
Confidence 45778999999999986 221 146789999999999999887653322222 333 333311 1 23
Q ss_pred CeEEEecCCCCHHHHHHHHHcCcCEEEE
Q 015722 315 VPVFLDGGVRRGTDVFKALALGASGVFV 342 (402)
Q Consensus 315 i~via~GGI~~g~dv~kal~lGAd~V~i 342 (402)
.++--.+.|.+|.+-|..+|+|.|+-
T Consensus 128 --~l~MAD~St~ee~l~a~~~G~D~IGT 153 (229)
T COG3010 128 --QLAMADCSTFEEGLNAHKLGFDIIGT 153 (229)
T ss_pred --cEEEeccCCHHHHHHHHHcCCcEEec
Confidence 34444578999999999999999854
No 324
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=95.67 E-value=0.046 Score=57.79 Aligned_cols=252 Identities=15% Similarity=0.140 Sum_probs=136.9
Q ss_pred hhhccccccccc-CCCCCCccceeec-CcccCCceeecccccccccCChhhHHHHHHHHHcCCeEEecCCccCCHHHHhh
Q 015722 76 AFSRILFRPRIL-RDVSKIDMTTTVL-GFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSS 153 (402)
Q Consensus 76 ~~~~~~l~pr~l-~~~~~~d~st~i~-G~~l~~Pi~iAPm~~~~~~~~~ge~ala~aa~~~G~~~~vs~~~~~s~eei~~ 153 (402)
.|||+.|+|... ...+++|++|.+- ...+..||+.|||...+ +..+|.+.+++|...+++. +.+.|+..+
T Consensus 23 tfddv~l~p~~~~~~~~~~~~~t~lt~~~~~~~Pivsa~M~~vt------~~~lA~Ama~aGGiGfI~~--~as~E~q~~ 94 (505)
T PLN02274 23 TYDDVIFHPGYIDFPADAVDLSTRLSRNIPLSIPCVSSPMDTVT------ESDMAIAMAALGGIGIVHY--NNTAEEQAA 94 (505)
T ss_pred CccceEecccccCcCCcccccccccccccCcCCCEeccCCcccc------hHHHHHHHHhCCCeEEEcC--CCCHHHHHH
Confidence 599999999865 3446788888775 46778999999997765 6689999999998777763 455665432
Q ss_pred ----cCC--CceEEEEeecCChhHHHHHHHHHHHcCCcEEEEecCC-----CCCCchhHHHhhhcCCCCccccccccccc
Q 015722 154 ----TGP--GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDT-----PRLGRREADIKNRFVLPPHLTLKNYEGLY 222 (402)
Q Consensus 154 ----~~~--~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~-----p~~g~r~~d~r~~~~~p~~~~~~~~~~~~ 222 (402)
... ....-....-.......++++...+.++..+.|+-+. +..--..+|++..-. +. .....+....
T Consensus 95 ~Irkvk~~~~gmi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~~-~~-~~V~eIMt~~ 172 (505)
T PLN02274 95 IVRKAKSRRVGFVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVND-RE-TKLSEVMTSD 172 (505)
T ss_pred HHHHhhcccccccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhccc-cC-CcHHHHhccC
Confidence 111 0000001111122334556666677888888775321 111112233321000 00 0000000000
Q ss_pred --cccCCC-CCchhhHHHhhhh-------cC------CCccHHHHHHHHHcc---------CccEEEEec--c---CHHH
Q 015722 223 --IGKMDK-TDDSGLASYVANQ-------ID------RSLNWKDVKWLQTIT---------SLPILVKGV--L---TAED 272 (402)
Q Consensus 223 --~~~~~~-~~~~~~~~~~~~~-------~d------~~~~~~~i~~lr~~~---------~~Pv~vK~~--~---~~~d 272 (402)
...+.. .....+-+.+... .+ .-.+.+++....+.- ...+.|... . ..+-
T Consensus 173 ~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~p~~~~~~~d~~~~l~vgaavg~~~~~~~r 252 (505)
T PLN02274 173 DDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGYPKLGKPSVGKDGKLLVGAAIGTRESDKER 252 (505)
T ss_pred CCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCcCccccccCCCCCEEEEEEEcCCccHHHH
Confidence 000000 0000000000000 00 012344444433321 123444431 1 2356
Q ss_pred HHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEc
Q 015722 273 ASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVG 343 (402)
Q Consensus 273 a~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iG 343 (402)
++.+.++|+|.|.+...-| .....++.+.+|++..+ +++||+ |+|.|.+++..++.+|||+|.+|
T Consensus 253 ~~~l~~ag~d~i~iD~~~g----~~~~~~~~i~~ik~~~p-~~~vi~-g~v~t~e~a~~a~~aGaD~i~vg 317 (505)
T PLN02274 253 LEHLVKAGVDVVVLDSSQG----DSIYQLEMIKYIKKTYP-ELDVIG-GNVVTMYQAQNLIQAGVDGLRVG 317 (505)
T ss_pred HHHHHHcCCCEEEEeCCCC----CcHHHHHHHHHHHHhCC-CCcEEE-ecCCCHHHHHHHHHcCcCEEEEC
Confidence 8889999999999975422 12445688999988663 455555 88999999999999999999775
No 325
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=95.66 E-value=0.45 Score=47.00 Aligned_cols=127 Identities=13% Similarity=0.141 Sum_probs=87.6
Q ss_pred EEEEeecCChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhh
Q 015722 160 FFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVA 239 (402)
Q Consensus 160 ~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (402)
.+++. ..+.+.+.+.++++.+.||+++-+.++.
T Consensus 127 ~~~~~-~~~~~~~~~~~~~~~~~Gf~~iKik~g~---------------------------------------------- 159 (316)
T cd03319 127 DYTIS-IDTPEAMAAAAKKAAKRGFPLLKIKLGG---------------------------------------------- 159 (316)
T ss_pred EEEEe-CCCHHHHHHHHHHHHHcCCCEEEEEeCC----------------------------------------------
Confidence 34554 4567777777888888899999886531
Q ss_pred hhcCCCccHHHHHHHHHccC-ccEEEEec--cCHHHH----HHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhc
Q 015722 240 NQIDRSLNWKDVKWLQTITS-LPILVKGV--LTAEDA----SLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAK 312 (402)
Q Consensus 240 ~~~d~~~~~~~i~~lr~~~~-~Pv~vK~~--~~~~da----~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~ 312 (402)
++....+.++.+|+.++ .++.++.. .+.++| +.+.+.+++.|-= ...+..++.++++++..
T Consensus 160 ---~~~~d~~~v~~lr~~~g~~~l~vD~n~~~~~~~A~~~~~~l~~~~l~~iEe--------P~~~~d~~~~~~L~~~~- 227 (316)
T cd03319 160 ---DLEDDIERIRAIREAAPDARLRVDANQGWTPEEAVELLRELAELGVELIEQ--------PVPAGDDDGLAYLRDKS- 227 (316)
T ss_pred ---ChhhHHHHHHHHHHhCCCCeEEEeCCCCcCHHHHHHHHHHHHhcCCCEEEC--------CCCCCCHHHHHHHHhcC-
Confidence 11123466888888764 67777754 344554 4456667777631 01134577888888766
Q ss_pred CCCeEEEecCCCCHHHHHHHHHc-CcCEEEEchHH
Q 015722 313 GRVPVFLDGGVRRGTDVFKALAL-GASGVFVGRPV 346 (402)
Q Consensus 313 ~~i~via~GGI~~g~dv~kal~l-GAd~V~iGr~~ 346 (402)
++||++++.+.+..|+.+++.. ++|.|++--..
T Consensus 228 -~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~~~~~ 261 (316)
T cd03319 228 -PLPIMADESCFSAADAARLAGGGAYDGINIKLMK 261 (316)
T ss_pred -CCCEEEeCCCCCHHHHHHHHhcCCCCEEEEeccc
Confidence 7999999999999999999996 48888887543
No 326
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=95.64 E-value=0.093 Score=55.44 Aligned_cols=254 Identities=18% Similarity=0.167 Sum_probs=129.4
Q ss_pred hhhcccccccccC---CCCCCccceeec--------CcccCCceeecccccccccCChhhHHHHHHHHHcCCeEEecCCc
Q 015722 76 AFSRILFRPRILR---DVSKIDMTTTVL--------GFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWA 144 (402)
Q Consensus 76 ~~~~~~l~pr~l~---~~~~~d~st~i~--------G~~l~~Pi~iAPm~~~~~~~~~ge~ala~aa~~~G~~~~vs~~~ 144 (402)
.|||+.|+|.... ..+++|++|.+- +.++..|+.-|+|.... +-+||.+..+.|...++..
T Consensus 11 tfddvll~P~~~~~~~~~~~v~~~t~~~~~~~~~~~~i~l~iP~~Satmdtvt------gdalAiala~~gG~g~Ih~-- 82 (502)
T PRK07107 11 TFSEYLLVPGLSSKECVPANVSLKTPLVKFKKGEESAITLNIPLVSAIMQSVS------DDNMAIALAREGGLSFIFG-- 82 (502)
T ss_pred cccceEEccCCCCCCcCccceeccccccccccCcccccccCCChHHHHHHHHh------hHHHHHHHHHcCCCeEeeC--
Confidence 6999999998763 447889998875 45688899999986543 5688888888887777642
Q ss_pred cCCHHHHhhc----CC--CceEEEEeecCChhHHHHHHHHHHHcCCcEEEEecCC----CCCC-chhHHHhhhcCCCCcc
Q 015722 145 TSSVEEVSST----GP--GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDT----PRLG-RREADIKNRFVLPPHL 213 (402)
Q Consensus 145 ~~s~eei~~~----~~--~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~----p~~g-~r~~d~r~~~~~p~~~ 213 (402)
++++|+.++. .. .......+.-.....+.++++...+.++..+.|.=+. -..| --.+|++.....+. .
T Consensus 83 n~sie~qa~lV~kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~~~~~-~ 161 (502)
T PRK07107 83 SQSIESEAAMVRRVKNYKAGFVVSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISRMSLD-T 161 (502)
T ss_pred CCCHHHHHHHHHHHHHHhcCCcCCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccccCCC-C
Confidence 3566553321 11 0000111111122344556666667777777664321 0011 11233331100000 0
Q ss_pred cccccccc--ccccCCC-CCchhhHHHhhhh-------cC------CCccHHHHHHHHHc------cCccEEE-EeccC-
Q 015722 214 TLKNYEGL--YIGKMDK-TDDSGLASYVANQ-------ID------RSLNWKDVKWLQTI------TSLPILV-KGVLT- 269 (402)
Q Consensus 214 ~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~-------~d------~~~~~~~i~~lr~~------~~~Pv~v-K~~~~- 269 (402)
....+-.. ....... .....+.+.+... .| .-.+.+++...+.. -...+.| ..+..
T Consensus 162 ~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~~~P~a~~d~~grL~V~~av~~~ 241 (502)
T PRK07107 162 KVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHKENPLELLDSSKRYVVGAGINTR 241 (502)
T ss_pred CHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcccChhhhhhhccCeeeeeccChh
Confidence 00000000 0000000 0000000000000 00 01123333222211 0111222 22221
Q ss_pred --HHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEc
Q 015722 270 --AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVG 343 (402)
Q Consensus 270 --~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iG 343 (402)
.+-++.+.++|+|.|+|.+.-| .....++.+.++++..+.+++| ..|-|-|.+++..++.+|||++-+|
T Consensus 242 ~~~~ra~~Lv~aGvd~i~vd~a~g----~~~~~~~~i~~ir~~~~~~~~V-~aGnV~t~e~a~~li~aGAd~I~vg 312 (502)
T PRK07107 242 DYAERVPALVEAGADVLCIDSSEG----YSEWQKRTLDWIREKYGDSVKV-GAGNVVDREGFRYLAEAGADFVKVG 312 (502)
T ss_pred hHHHHHHHHHHhCCCeEeecCccc----ccHHHHHHHHHHHHhCCCCceE-EeccccCHHHHHHHHHcCCCEEEEC
Confidence 2457788999999999864322 1123467888888876433444 4499999999999999999999884
No 327
>PLN02417 dihydrodipicolinate synthase
Probab=95.61 E-value=0.1 Score=50.92 Aligned_cols=92 Identities=18% Similarity=0.272 Sum_probs=59.3
Q ss_pred HHHHHHhCCcEEEEecCcccCCCCCcc-hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHH----HHHcCcCEEEEchHHH
Q 015722 273 ASLAIQYGAAGIIVSNHGARQLDYVPA-TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFK----ALALGASGVFVGRPVP 347 (402)
Q Consensus 273 a~~a~~aGad~I~vsn~gg~~~d~~~~-~~~~l~~i~~~~~~~i~via~GGI~~g~dv~k----al~lGAd~V~iGr~~l 347 (402)
++.+.+.|+++|.+.++-|-...-... -.+.+..+++.+.+++||++.=|=.+-.|+++ |-.+|||+|++-.|++
T Consensus 28 i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~~~Gadav~~~~P~y 107 (280)
T PLN02417 28 VNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYY 107 (280)
T ss_pred HHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHHHHcCCCEEEEcCCcc
Confidence 355678899999997664421111111 12345555666667899998766656666665 3458999999999987
Q ss_pred HhhhcCChHHHHHHHHHHHH
Q 015722 348 FSLAVDGEAGVRKVLQMLRD 367 (402)
Q Consensus 348 ~~~~~~G~~gv~~~i~~l~~ 367 (402)
+.. .++++.++++.+.+
T Consensus 108 ~~~---~~~~i~~~f~~va~ 124 (280)
T PLN02417 108 GKT---SQEGLIKHFETVLD 124 (280)
T ss_pred CCC---CHHHHHHHHHHHHh
Confidence 642 35666666655544
No 328
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=95.59 E-value=1.9 Score=42.05 Aligned_cols=183 Identities=17% Similarity=0.113 Sum_probs=104.6
Q ss_pred CceeecccccccccCChhhHHHHHHHHHcCCeEEe--c---CCccCCHHHHh-------hcCC--CceEEEEeecCChhH
Q 015722 106 MPIMIAPTAFQKMAHPEGECATARAASAAGTIMTL--S---SWATSSVEEVS-------STGP--GIRFFQLYVTKHRNV 171 (402)
Q Consensus 106 ~Pi~iAPm~~~~~~~~~ge~ala~aa~~~G~~~~v--s---~~~~~s~eei~-------~~~~--~~~~~QLy~~~d~~~ 171 (402)
.|.++.|+.-.+-.+.++-..+.+-+.+.|+-..+ + ++.+.+.+|-. +... -+.++++- ..+.+.
T Consensus 3 ~~a~~TPf~~~g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~-~~s~~~ 81 (285)
T TIGR00674 3 ITALITPFKEDGSVDFAALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTG-SNATEE 81 (285)
T ss_pred cCceeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCC-CccHHH
Confidence 35567777444444555555777777788875443 2 22345666532 2222 34555653 335667
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCCccHHHH
Q 015722 172 DAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDV 251 (402)
Q Consensus 172 ~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i 251 (402)
+.++++.+++.|++++.+.. |.+ .+. +.+-..+..
T Consensus 82 ~i~~a~~a~~~Gad~v~v~p--P~y------------~~~-------------------------------~~~~i~~~~ 116 (285)
T TIGR00674 82 AISLTKFAEDVGADGFLVVT--PYY------------NKP-------------------------------TQEGLYQHF 116 (285)
T ss_pred HHHHHHHHHHcCCCEEEEcC--CcC------------CCC-------------------------------CHHHHHHHH
Confidence 77888999999999998732 321 000 000122445
Q ss_pred HHHHHccCccEEEEec-------cCHHHHHHHHHhC-CcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCC
Q 015722 252 KWLQTITSLPILVKGV-------LTAEDASLAIQYG-AAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGV 323 (402)
Q Consensus 252 ~~lr~~~~~Pv~vK~~-------~~~~da~~a~~aG-ad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI 323 (402)
+.+.+.+++||++=.. .+++..+++.+.. +-+|.-+ ...+..+.++.+..+++..|+. |
T Consensus 117 ~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~~~v~giK~s----------~~d~~~~~~l~~~~~~~~~v~~-G-- 183 (285)
T TIGR00674 117 KAIAEEVDLPIILYNVPSRTGVSLYPETVKRLAEEPNIVAIKEA----------TGNLERISEIKAIAPDDFVVLS-G-- 183 (285)
T ss_pred HHHHhcCCCCEEEEECcHHhcCCCCHHHHHHHHcCCCEEEEEeC----------CCCHHHHHHHHHhcCCCeEEEE-C--
Confidence 6666667888886543 4667777776543 2222221 1223445556555544555444 3
Q ss_pred CCHHHHHHHHHcCcCEEEEchHHHH
Q 015722 324 RRGTDVFKALALGASGVFVGRPVPF 348 (402)
Q Consensus 324 ~~g~dv~kal~lGAd~V~iGr~~l~ 348 (402)
...-++..+.+||++.+.|...++
T Consensus 184 -~d~~~~~~~~~G~~G~i~~~~~~~ 207 (285)
T TIGR00674 184 -DDALTLPMMALGGKGVISVTANVA 207 (285)
T ss_pred -chHHHHHHHHcCCCEEEehHHHhh
Confidence 224567889999999998876543
No 329
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=95.57 E-value=0.054 Score=50.52 Aligned_cols=71 Identities=24% Similarity=0.222 Sum_probs=55.1
Q ss_pred HHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHH
Q 015722 270 AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPV 346 (402)
Q Consensus 270 ~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~ 346 (402)
.+.|+...++||++|.+...-+. -....+.+..+++.+ ++||+.-|+|++..++..++.+|||+|.++.+.
T Consensus 34 ~~~A~~~~~~GA~~l~v~~~~~~----~~g~~~~~~~i~~~v--~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~ 104 (217)
T cd00331 34 VEIAKAYEKAGAAAISVLTEPKY----FQGSLEDLRAVREAV--SLPVLRKDFIIDPYQIYEARAAGADAVLLIVAA 104 (217)
T ss_pred HHHHHHHHHcCCCEEEEEeCccc----cCCCHHHHHHHHHhc--CCCEEECCeecCHHHHHHHHHcCCCEEEEeecc
Confidence 46688999999999988542111 012346677777766 799999999999999999999999999988754
No 330
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=95.56 E-value=0.32 Score=48.52 Aligned_cols=187 Identities=18% Similarity=0.113 Sum_probs=102.9
Q ss_pred CCceeecccccccccCChhhHHHHHHHHHcCCeEEe---cCCcc------CCH--------HHHhhcCCCceEEEEeecC
Q 015722 105 SMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTL---SSWAT------SSV--------EEVSSTGPGIRFFQLYVTK 167 (402)
Q Consensus 105 ~~Pi~iAPm~~~~~~~~~ge~ala~aa~~~G~~~~v---s~~~~------~s~--------eei~~~~~~~~~~QLy~~~ 167 (402)
..|++++=+ +. .++.-..+++.+.++|+.+.- |.... ..+ +.+.+...-|.++.|-+
T Consensus 99 ~~pvi~si~-g~---~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vKl~p-- 172 (325)
T cd04739 99 SIPVIASLN-GV---SAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVKLSP-- 172 (325)
T ss_pred CCeEEEEeC-CC---CHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCEEEEcCC--
Confidence 568776633 22 233345788888888865442 21100 011 22333334678888753
Q ss_pred ChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCCcc
Q 015722 168 HRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLN 247 (402)
Q Consensus 168 d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 247 (402)
+.....++++.++++|+++|.++=..+.. .-|+ .+.... .....++. ......
T Consensus 173 ~~~~~~~~a~~l~~~Gadgi~~~nt~~~~---~id~------------~~~~~~-----~~~glSG~-------~~~~~a 225 (325)
T cd04739 173 FFSALAHMAKQLDAAGADGLVLFNRFYQP---DIDL------------ETLEVV-----PNLLLSSP-------AEIRLP 225 (325)
T ss_pred CccCHHHHHHHHHHcCCCeEEEEcCcCCC---Cccc------------ccccee-----cCCCcCCc-------cchhHH
Confidence 33456788889999999999885432211 0000 000000 00000110 011235
Q ss_pred HHHHHHHHHccCccEEE-EeccCHHHHHHHHHhCCcEEEEecCcccCCCCCcchH-HHHHHHHHHhcCCCeEEEecCCCC
Q 015722 248 WKDVKWLQTITSLPILV-KGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATV-MALEEVVQAAKGRVPVFLDGGVRR 325 (402)
Q Consensus 248 ~~~i~~lr~~~~~Pv~v-K~~~~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~-~~l~~i~~~~~~~i~via~GGI~~ 325 (402)
++.+.++++.+++||+. .|+.+.+||...+.+|||+|.+... -+..|+..+ +.+.++.+.+ -.-|+.+
T Consensus 226 l~~v~~v~~~~~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ta---~~~~gp~~~~~i~~~L~~~l-------~~~g~~~ 295 (325)
T cd04739 226 LRWIAILSGRVKASLAASGGVHDAEDVVKYLLAGADVVMTTSA---LLRHGPDYIGTLLAGLEAWM-------EEHGYES 295 (325)
T ss_pred HHHHHHHHcccCCCEEEECCCCCHHHHHHHHHcCCCeeEEehh---hhhcCchHHHHHHHHHHHHH-------HHcCCCC
Confidence 67788888888999884 5689999999999999999998521 122234332 2334443332 2356788
Q ss_pred HHHHHHHHH
Q 015722 326 GTDVFKALA 334 (402)
Q Consensus 326 g~dv~kal~ 334 (402)
-+|+.-.++
T Consensus 296 i~e~~G~~~ 304 (325)
T cd04739 296 VQQLRGSMS 304 (325)
T ss_pred HHHHhcccc
Confidence 888764433
No 331
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=95.54 E-value=0.11 Score=51.07 Aligned_cols=91 Identities=18% Similarity=0.214 Sum_probs=60.2
Q ss_pred HHHHHHhCCcEEEEecCcccCCCCCcc---hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHH----HHHcCcCEEEEchH
Q 015722 273 ASLAIQYGAAGIIVSNHGARQLDYVPA---TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFK----ALALGASGVFVGRP 345 (402)
Q Consensus 273 a~~a~~aGad~I~vsn~gg~~~d~~~~---~~~~l~~i~~~~~~~i~via~GGI~~g~dv~k----al~lGAd~V~iGr~ 345 (402)
++.+.+.|+++|.+.++-|-. ...+ ..+.+..+++.+.+++||++--|-.+-.|.++ |-++|||+|++..|
T Consensus 27 v~~~~~~Gv~gi~v~GstGE~--~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v~pP 104 (294)
T TIGR02313 27 IEFQIEGGSHAISVGGTSGEP--GSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAGADAAMVIVP 104 (294)
T ss_pred HHHHHHcCCCEEEECccCccc--ccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcCCCEEEEcCc
Confidence 455678899999996553321 1122 23455666666777899997666666666653 44579999999999
Q ss_pred HHHhhhcCChHHHHHHHHHHHHH
Q 015722 346 VPFSLAVDGEAGVRKVLQMLRDE 368 (402)
Q Consensus 346 ~l~~~~~~G~~gv~~~i~~l~~e 368 (402)
+++.. .++++.+++..+.+.
T Consensus 105 ~y~~~---~~~~l~~~f~~ia~a 124 (294)
T TIGR02313 105 YYNKP---NQEALYDHFAEVADA 124 (294)
T ss_pred cCCCC---CHHHHHHHHHHHHHh
Confidence 98753 346665555555443
No 332
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=95.54 E-value=0.11 Score=51.40 Aligned_cols=92 Identities=18% Similarity=0.302 Sum_probs=59.3
Q ss_pred HHHHHHhCCcEEEEecCcccCCCCCcc-hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHH----HHcCcCEEEEchHHH
Q 015722 273 ASLAIQYGAAGIIVSNHGARQLDYVPA-TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKA----LALGASGVFVGRPVP 347 (402)
Q Consensus 273 a~~a~~aGad~I~vsn~gg~~~d~~~~-~~~~l~~i~~~~~~~i~via~GGI~~g~dv~ka----l~lGAd~V~iGr~~l 347 (402)
++.+.+.|+|+|.+.++.|-...-... -.+.+..+++.+.+++|||+.-|- +-.+.++. -.+|||+|++-.|++
T Consensus 34 i~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~-~t~~~i~~~~~a~~~Gadav~~~pP~y 112 (303)
T PRK03620 34 LEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGG-GTAQAIEYAQAAERAGADGILLLPPYL 112 (303)
T ss_pred HHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCC-CHHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 455678899999996654321111111 234566666777778999986664 56666543 347999999999987
Q ss_pred HhhhcCChHHHHHHHHHHHHH
Q 015722 348 FSLAVDGEAGVRKVLQMLRDE 368 (402)
Q Consensus 348 ~~~~~~G~~gv~~~i~~l~~e 368 (402)
+.. .++++.++++.+.+.
T Consensus 113 ~~~---~~~~i~~~f~~va~~ 130 (303)
T PRK03620 113 TEA---PQEGLAAHVEAVCKS 130 (303)
T ss_pred CCC---CHHHHHHHHHHHHHh
Confidence 642 356666666665544
No 333
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=95.51 E-value=0.047 Score=51.57 Aligned_cols=41 Identities=27% Similarity=0.498 Sum_probs=32.3
Q ss_pred cHHHHHHHHHccCccEEEE-eccCHHHHHHHHHhCCcEEEEe
Q 015722 247 NWKDVKWLQTITSLPILVK-GVLTAEDASLAIQYGAAGIIVS 287 (402)
Q Consensus 247 ~~~~i~~lr~~~~~Pv~vK-~~~~~~da~~a~~aGad~I~vs 287 (402)
+...++.+++..++||+|- |+.++.||..++|.|+|+|-+.
T Consensus 163 n~~~l~~i~~~~~vPvIvDAGiG~pSdaa~AMElG~daVLvN 204 (247)
T PF05690_consen 163 NPYNLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLVN 204 (247)
T ss_dssp THHHHHHHHHHGSSSBEEES---SHHHHHHHHHTT-SEEEES
T ss_pred CHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHcCCceeehh
Confidence 4466888888889999996 6789999999999999999773
No 334
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=95.50 E-value=0.11 Score=50.87 Aligned_cols=91 Identities=19% Similarity=0.324 Sum_probs=59.0
Q ss_pred HHHHHHhCCcEEEEecCcccCCCCCcc-hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHH----HHcCcCEEEEchHHH
Q 015722 273 ASLAIQYGAAGIIVSNHGARQLDYVPA-TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKA----LALGASGVFVGRPVP 347 (402)
Q Consensus 273 a~~a~~aGad~I~vsn~gg~~~d~~~~-~~~~l~~i~~~~~~~i~via~GGI~~g~dv~ka----l~lGAd~V~iGr~~l 347 (402)
++.+.+.|+++|.+.++-|-...-... -.+.+..+++.+.+++|||+.-|- +-.+.++. -.+|||++++-.|++
T Consensus 27 ~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~-~t~~~i~~a~~a~~~Gad~v~~~pP~y 105 (289)
T cd00951 27 VEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGY-GTATAIAYAQAAEKAGADGILLLPPYL 105 (289)
T ss_pred HHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCC-CHHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 455778999999996654321111111 134456666666678999997775 66666643 347999999999987
Q ss_pred HhhhcCChHHHHHHHHHHHH
Q 015722 348 FSLAVDGEAGVRKVLQMLRD 367 (402)
Q Consensus 348 ~~~~~~G~~gv~~~i~~l~~ 367 (402)
+.. .++++.++++.+.+
T Consensus 106 ~~~---~~~~i~~~f~~v~~ 122 (289)
T cd00951 106 TEA---PQEGLYAHVEAVCK 122 (289)
T ss_pred CCC---CHHHHHHHHHHHHh
Confidence 642 45666666555544
No 335
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=95.49 E-value=0.73 Score=43.07 Aligned_cols=92 Identities=21% Similarity=0.283 Sum_probs=64.8
Q ss_pred CCccHHHHHHHHHccCccEEEEec-cCH---HHHHHHHHhCCcEEEEecC-----cccCCCCCcchHHHHHHHHHHhcCC
Q 015722 244 RSLNWKDVKWLQTITSLPILVKGV-LTA---EDASLAIQYGAAGIIVSNH-----GARQLDYVPATVMALEEVVQAAKGR 314 (402)
Q Consensus 244 ~~~~~~~i~~lr~~~~~Pv~vK~~-~~~---~da~~a~~aGad~I~vsn~-----gg~~~d~~~~~~~~l~~i~~~~~~~ 314 (402)
.+.+.+.++.+++..++|++ |-+ ... .........-+|.+.+..+ ||+ +-.-.|+.++.. ...
T Consensus 83 G~e~~~~~~~l~~~~~~~v~-kai~v~~~~~~~~~~~~~~~~d~~LlDa~~~~~~GGt---G~~fDW~~l~~~----~~~ 154 (208)
T COG0135 83 GDEDPEYIDQLKEELGVPVI-KAISVSEEGDLELAAREEGPVDAILLDAKVPGLPGGT---GQTFDWNLLPKL----RLS 154 (208)
T ss_pred CCCCHHHHHHHHhhcCCceE-EEEEeCCccchhhhhhccCCccEEEEcCCCCCCCCCC---CcEECHHHhccc----ccc
Confidence 33466788999988788886 543 222 2344455666899988874 433 234467777765 125
Q ss_pred CeEEEecCCCCHHHHHHHHHcCc-CEEEEch
Q 015722 315 VPVFLDGGVRRGTDVFKALALGA-SGVFVGR 344 (402)
Q Consensus 315 i~via~GGI~~g~dv~kal~lGA-d~V~iGr 344 (402)
.|++..|||. ++.+.+|++++. .+|=+-+
T Consensus 155 ~~~~LAGGL~-p~NV~~ai~~~~p~gvDvSS 184 (208)
T COG0135 155 KPVMLAGGLN-PDNVAEAIALGPPYGVDVSS 184 (208)
T ss_pred CCEEEECCCC-HHHHHHHHHhcCCceEEecc
Confidence 7899999997 999999999987 8887776
No 336
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=95.49 E-value=2.9 Score=41.24 Aligned_cols=183 Identities=17% Similarity=0.097 Sum_probs=106.0
Q ss_pred CceeecccccccccCChhhHHHHHHHHHcCCeEEe--c---CCccCCHHHHh-------hcCC--CceEEEEeecCChhH
Q 015722 106 MPIMIAPTAFQKMAHPEGECATARAASAAGTIMTL--S---SWATSSVEEVS-------STGP--GIRFFQLYVTKHRNV 171 (402)
Q Consensus 106 ~Pi~iAPm~~~~~~~~~ge~ala~aa~~~G~~~~v--s---~~~~~s~eei~-------~~~~--~~~~~QLy~~~d~~~ 171 (402)
.|.++.|+.-.+-.+.++-..+.+...+.|+...+ + ++.+.+.||-. +... -+.+..+- .+.+.
T Consensus 12 ~~a~vTPf~~dg~iD~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~--~~t~~ 89 (303)
T PRK03620 12 LSFPVTPFDADGSFDEAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAG--GGTAQ 89 (303)
T ss_pred EEeeeCCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC--CCHHH
Confidence 56777887544445555556777888888875543 2 33456776632 2222 34566663 36777
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCCccHHHH
Q 015722 172 DAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDV 251 (402)
Q Consensus 172 ~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i 251 (402)
+.++++.++++|++++.+. .|.+. + . +..-..+..
T Consensus 90 ~i~~~~~a~~~Gadav~~~--pP~y~------------~--~-----------------------------~~~~i~~~f 124 (303)
T PRK03620 90 AIEYAQAAERAGADGILLL--PPYLT------------E--A-----------------------------PQEGLAAHV 124 (303)
T ss_pred HHHHHHHHHHhCCCEEEEC--CCCCC------------C--C-----------------------------CHHHHHHHH
Confidence 8889999999999999872 23210 0 0 000012445
Q ss_pred HHHHHccCccEEEEe----ccCHHHHHHHH-Hh-CCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCC
Q 015722 252 KWLQTITSLPILVKG----VLTAEDASLAI-QY-GAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRR 325 (402)
Q Consensus 252 ~~lr~~~~~Pv~vK~----~~~~~da~~a~-~a-Gad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~ 325 (402)
+.+.+.+++||++=. ..+++...++. +. .+-+|.-+. ..+..+.++.+..+++..|+ +| ..+
T Consensus 125 ~~va~~~~lpi~lYn~~g~~l~~~~l~~L~~~~pni~giK~s~----------~d~~~~~~~~~~~~~~f~vl-~G-~d~ 192 (303)
T PRK03620 125 EAVCKSTDLGVIVYNRDNAVLTADTLARLAERCPNLVGFKDGV----------GDIELMQRIVRALGDRLLYL-GG-LPT 192 (303)
T ss_pred HHHHHhCCCCEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEeCC----------CCHHHHHHHHHHcCCCeEEE-eC-CCc
Confidence 666667788887642 25677777666 43 344444331 23455555655555455544 33 221
Q ss_pred -HHHHHHHHHcCcCEEEEchHHH
Q 015722 326 -GTDVFKALALGASGVFVGRPVP 347 (402)
Q Consensus 326 -g~dv~kal~lGAd~V~iGr~~l 347 (402)
-..+..++.+||++...|..-+
T Consensus 193 ~e~~~~~~~~~G~~G~is~~an~ 215 (303)
T PRK03620 193 AEVFAAAYLALGVPTYSSAVFNF 215 (303)
T ss_pred chhhHHHHHhCCCCEEEecHHhh
Confidence 2334567789999998887544
No 337
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=95.45 E-value=0.06 Score=53.32 Aligned_cols=107 Identities=24% Similarity=0.362 Sum_probs=71.8
Q ss_pred CceEEEEeecCChh----HHHHHHHHHHHc---CCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCC
Q 015722 157 GIRFFQLYVTKHRN----VDAQLVKRAERA---GFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKT 229 (402)
Q Consensus 157 ~~~~~QLy~~~d~~----~~~~~l~ra~~~---G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~ 229 (402)
+..|+.|-+..|.. ...+.+++++.. ||..+.++.|.|...+|..++.-.--.| +
T Consensus 164 ~~~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~~g~~avmP---------------l--- 225 (326)
T PRK11840 164 GWDLVKLEVLGDAKTLYPDMVETLKATEILVKEGFQVMVYCSDDPIAAKRLEDAGAVAVMP---------------L--- 225 (326)
T ss_pred CCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcCCEEEee---------------c---
Confidence 45698887655443 235667777776 9999899999998877766652100001 0
Q ss_pred CchhhHHHhhhhcCCCccHHHHHHHHHccCccEEEE-eccCHHHHHHHHHhCCcEEEEe
Q 015722 230 DDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVK-GVLTAEDASLAIQYGAAGIIVS 287 (402)
Q Consensus 230 ~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~Pv~vK-~~~~~~da~~a~~aGad~I~vs 287 (402)
.+.+++ .-+-.+.+.|+.+++..++||++- |+.+++|+..|++.|+|++-+.
T Consensus 226 -----~~pIGs-g~gv~~p~~i~~~~e~~~vpVivdAGIg~~sda~~AmelGadgVL~n 278 (326)
T PRK11840 226 -----GAPIGS-GLGIQNPYTIRLIVEGATVPVLVDAGVGTASDAAVAMELGCDGVLMN 278 (326)
T ss_pred -----cccccC-CCCCCCHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence 001111 011124567888888888999986 6799999999999999999773
No 338
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=95.45 E-value=0.26 Score=47.20 Aligned_cols=126 Identities=17% Similarity=0.239 Sum_probs=77.9
Q ss_pred eecCChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcC
Q 015722 164 YVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQID 243 (402)
Q Consensus 164 y~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 243 (402)
|...+.+.+.+-++.+++.|++.+++.+=++ +
T Consensus 67 Ys~~E~~~M~~di~~~~~~GadGvV~G~L~~------------------------------------------------d 98 (248)
T PRK11572 67 YSDGEFAAMLEDIATVRELGFPGLVTGVLDV------------------------------------------------D 98 (248)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEeeECC------------------------------------------------C
Confidence 3334456777778888899999998743111 2
Q ss_pred CCccHHHHHHHHHcc-CccEEEEec----cCHHH-HHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeE
Q 015722 244 RSLNWKDVKWLQTIT-SLPILVKGV----LTAED-ASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPV 317 (402)
Q Consensus 244 ~~~~~~~i~~lr~~~-~~Pv~vK~~----~~~~d-a~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~v 317 (402)
...+.+.++.+.+.. +.|+..--. .++.. .+.+.+.|++.|-.|+ |.. .....++.|.++.+...+.+ |
T Consensus 99 g~vD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~al~~l~~lG~~rILTSG--g~~--~a~~g~~~L~~lv~~a~~~~-I 173 (248)
T PRK11572 99 GHVDMPRMRKIMAAAGPLAVTFHRAFDMCANPLNALKQLADLGVARILTSG--QQQ--DAEQGLSLIMELIAASDGPI-I 173 (248)
T ss_pred CCcCHHHHHHHHHHhcCCceEEechhhccCCHHHHHHHHHHcCCCEEECCC--CCC--CHHHHHHHHHHHHHhcCCCE-E
Confidence 223445556665555 567766432 34444 5678899999987743 321 11223455666655544444 8
Q ss_pred EEecCCCCHHHHHHHHHcCcCEEEEc
Q 015722 318 FLDGGVRRGTDVFKALALGASGVFVG 343 (402)
Q Consensus 318 ia~GGI~~g~dv~kal~lGAd~V~iG 343 (402)
++-|||+ .+.+.+...+|+..+=..
T Consensus 174 m~GgGV~-~~Nv~~l~~tG~~~~H~s 198 (248)
T PRK11572 174 MAGAGVR-LSNLHKFLDAGVREVHSS 198 (248)
T ss_pred EeCCCCC-HHHHHHHHHcCCCEEeeC
Confidence 8888887 777877778998877543
No 339
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=95.40 E-value=0.15 Score=49.38 Aligned_cols=92 Identities=25% Similarity=0.367 Sum_probs=59.6
Q ss_pred HHHHHHhCCcEEEEecCcccCCCCCcc-hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHH----HHHcCcCEEEEchHHH
Q 015722 273 ASLAIQYGAAGIIVSNHGARQLDYVPA-TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFK----ALALGASGVFVGRPVP 347 (402)
Q Consensus 273 a~~a~~aGad~I~vsn~gg~~~d~~~~-~~~~l~~i~~~~~~~i~via~GGI~~g~dv~k----al~lGAd~V~iGr~~l 347 (402)
++.+.+.|+++|.+.++.|....-... ..+.+..+++.+.+++||++.-|=.+-.+.++ +-.+|||+|++..|++
T Consensus 24 i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~pP~y 103 (281)
T cd00408 24 VEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGADGVLVVPPYY 103 (281)
T ss_pred HHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECCCcC
Confidence 455778899999997664432111111 23456666667667899988776666666554 3347999999999988
Q ss_pred HhhhcCChHHHHHHHHHHHH
Q 015722 348 FSLAVDGEAGVRKVLQMLRD 367 (402)
Q Consensus 348 ~~~~~~G~~gv~~~i~~l~~ 367 (402)
+.. .++++.+++..+.+
T Consensus 104 ~~~---~~~~~~~~~~~ia~ 120 (281)
T cd00408 104 NKP---SQEGIVAHFKAVAD 120 (281)
T ss_pred CCC---CHHHHHHHHHHHHh
Confidence 752 35665555555443
No 340
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=95.39 E-value=0.06 Score=54.16 Aligned_cols=67 Identities=24% Similarity=0.339 Sum_probs=51.2
Q ss_pred HHHHHHHHHhCCcEEEEec-CcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEc
Q 015722 270 AEDASLAIQYGAAGIIVSN-HGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVG 343 (402)
Q Consensus 270 ~~da~~a~~aGad~I~vsn-~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iG 343 (402)
.+-++.+.++|+|.|++.. ||- .....+.++++++..+ ++|||+ |.|-|++-+...+.+|||+|-+|
T Consensus 110 ~er~~~L~~agvD~ivID~a~g~-----s~~~~~~ik~ik~~~~-~~~via-GNV~T~e~a~~L~~aGad~vkVG 177 (352)
T PF00478_consen 110 FERAEALVEAGVDVIVIDSAHGH-----SEHVIDMIKKIKKKFP-DVPVIA-GNVVTYEGAKDLIDAGADAVKVG 177 (352)
T ss_dssp HHHHHHHHHTT-SEEEEE-SSTT-----SHHHHHHHHHHHHHST-TSEEEE-EEE-SHHHHHHHHHTT-SEEEES
T ss_pred HHHHHHHHHcCCCEEEccccCcc-----HHHHHHHHHHHHHhCC-CceEEe-cccCCHHHHHHHHHcCCCEEEEe
Confidence 4667888999999999974 432 2345677888888774 789986 88999999999999999999988
No 341
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=95.37 E-value=3.1 Score=40.83 Aligned_cols=107 Identities=18% Similarity=0.238 Sum_probs=71.6
Q ss_pred cCHHHHHHH-HHhCCcEEEEec---CcccCCCCCcc--hHHHHHHHHHHhcCCCeEEEecCCCC-HHHHHHHHHcCcCEE
Q 015722 268 LTAEDASLA-IQYGAAGIIVSN---HGARQLDYVPA--TVMALEEVVQAAKGRVPVFLDGGVRR-GTDVFKALALGASGV 340 (402)
Q Consensus 268 ~~~~da~~a-~~aGad~I~vsn---~gg~~~d~~~~--~~~~l~~i~~~~~~~i~via~GGI~~-g~dv~kal~lGAd~V 340 (402)
.++++|+.- .+.|+|.+-++. ||-+ .+.+ .++.|.+|++.+ ++|+..=||=.. -+++.|++.+|..=|
T Consensus 155 T~peeA~~Fv~~TgvD~LAvaiGt~HG~y---~~~p~Ld~~~L~~I~~~~--~iPLVlHGgSG~~~e~~~kai~~Gi~Ki 229 (284)
T PRK12737 155 TNPDAAAEFVERTGIDSLAVAIGTAHGLY---KGEPKLDFERLAEIREKV--SIPLVLHGASGVPDEDVKKAISLGICKV 229 (284)
T ss_pred CCHHHHHHHHHHhCCCEEeeccCcccccc---CCCCcCCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHCCCeEE
Confidence 578887664 469999999874 5644 2333 678899999988 789888775444 456678999999999
Q ss_pred EEchHHHHhhhc-------C--C----hHHHHHHHHHHHHHHHHHHHHhCCC
Q 015722 341 FVGRPVPFSLAV-------D--G----EAGVRKVLQMLRDEFELTMALSGCR 379 (402)
Q Consensus 341 ~iGr~~l~~~~~-------~--G----~~gv~~~i~~l~~el~~~m~~~G~~ 379 (402)
-|+|-+-.+... . + ..-.....+.+++.++..|..+|..
T Consensus 230 Ni~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 281 (284)
T PRK12737 230 NVATELKIAFSDAVKKYFYENPKANDPRKYMTPGKAAMKEVVREKIKVCGSE 281 (284)
T ss_pred EeCcHHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999976443210 0 0 0112334455666667777777653
No 342
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=95.36 E-value=0.24 Score=47.66 Aligned_cols=64 Identities=38% Similarity=0.479 Sum_probs=47.9
Q ss_pred HHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCC-HHH-----HHHHHHcCcCEEEEchHH
Q 015722 273 ASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRR-GTD-----VFKALALGASGVFVGRPV 346 (402)
Q Consensus 273 a~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~-g~d-----v~kal~lGAd~V~iGr~~ 346 (402)
++.+.+.|||.|.+.-.| ..+...++.+.+ .+||+.+||=++ .++ +..++..||.++.+||=+
T Consensus 172 aRlaaelGADIiK~~ytg---------~~e~F~~vv~~~--~vpVviaGG~k~~~~~~~l~~~~~ai~aGa~G~~~GRNi 240 (265)
T COG1830 172 ARLAAELGADIIKTKYTG---------DPESFRRVVAAC--GVPVVIAGGPKTETEREFLEMVTAAIEAGAMGVAVGRNI 240 (265)
T ss_pred HHHHHHhcCCeEeecCCC---------ChHHHHHHHHhC--CCCEEEeCCCCCCChHHHHHHHHHHHHccCcchhhhhhh
Confidence 567899999999984322 236777888777 499999999998 332 224566899999999954
Q ss_pred H
Q 015722 347 P 347 (402)
Q Consensus 347 l 347 (402)
.
T Consensus 241 f 241 (265)
T COG1830 241 F 241 (265)
T ss_pred h
Confidence 4
No 343
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=95.36 E-value=0.36 Score=45.47 Aligned_cols=123 Identities=18% Similarity=0.300 Sum_probs=79.2
Q ss_pred eecCChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcC
Q 015722 164 YVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQID 243 (402)
Q Consensus 164 y~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 243 (402)
|...+.+.+.+-++.++++|++++++.+-++ |
T Consensus 67 Y~~~E~~iM~~DI~~~~~lG~~GVV~G~lt~------------------------------------------------d 98 (241)
T COG3142 67 YSDDELEIMLEDIRLARELGVQGVVLGALTA------------------------------------------------D 98 (241)
T ss_pred cChHHHHHHHHHHHHHHHcCCCcEEEeeecC------------------------------------------------C
Confidence 4334456778888999999999998743211 2
Q ss_pred CCccHHHHHHHHHcc-CccEEEEe----ccCHHH-HHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeE
Q 015722 244 RSLNWKDVKWLQTIT-SLPILVKG----VLTAED-ASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPV 317 (402)
Q Consensus 244 ~~~~~~~i~~lr~~~-~~Pv~vK~----~~~~~d-a~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~v 317 (402)
...+.+.++.+.+.. +++|..-- +.++.. .+.+.+.|+..|-. |||. ....-.++.|.++.+..++++.|
T Consensus 99 g~iD~~~le~Li~aA~gL~vTFHrAFD~~~d~~~ale~li~~Gv~RILT--sGg~--~sa~eg~~~l~~li~~a~gri~I 174 (241)
T COG3142 99 GNIDMPRLEKLIEAAGGLGVTFHRAFDECPDPLEALEQLIELGVERILT--SGGK--ASALEGLDLLKRLIEQAKGRIII 174 (241)
T ss_pred CccCHHHHHHHHHHccCCceeeehhhhhcCCHHHHHHHHHHCCCcEEec--CCCc--CchhhhHHHHHHHHHHhcCCEEE
Confidence 234555566666654 56666653 244444 57889999999877 4553 12222345566666665678999
Q ss_pred EEecCCCCHHHHHHH-HHcCcCE
Q 015722 318 FLDGGVRRGTDVFKA-LALGASG 339 (402)
Q Consensus 318 ia~GGI~~g~dv~ka-l~lGAd~ 339 (402)
++-|||+ .+.+... ..+|+.-
T Consensus 175 m~GaGV~-~~N~~~l~~~tg~~e 196 (241)
T COG3142 175 MAGAGVR-AENIAELVLLTGVTE 196 (241)
T ss_pred EeCCCCC-HHHHHHHHHhcCchh
Confidence 9999998 6666665 4577643
No 344
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=95.31 E-value=0.23 Score=49.27 Aligned_cols=88 Identities=10% Similarity=0.260 Sum_probs=61.5
Q ss_pred CceEEEEeecC-ChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhH
Q 015722 157 GIRFFQLYVTK-HRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLA 235 (402)
Q Consensus 157 ~~~~~QLy~~~-d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (402)
-|.++.+-.+. +.+...++++.++++|+++|.|+-.+.. .++
T Consensus 134 ~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~---------~~y---------------------------- 176 (312)
T PRK10550 134 LPVTVKVRLGWDSGERKFEIADAVQQAGATELVVHGRTKE---------DGY---------------------------- 176 (312)
T ss_pred cceEEEEECCCCCchHHHHHHHHHHhcCCCEEEECCCCCc---------cCC----------------------------
Confidence 36666665432 2344678888899999999877532210 000
Q ss_pred HHhhhhcCCCccHHHHHHHHHccCccEEEEe-ccCHHHHHHHH-HhCCcEEEEe
Q 015722 236 SYVANQIDRSLNWKDVKWLQTITSLPILVKG-VLTAEDASLAI-QYGAAGIIVS 287 (402)
Q Consensus 236 ~~~~~~~d~~~~~~~i~~lr~~~~~Pv~vK~-~~~~~da~~a~-~aGad~I~vs 287 (402)
.-+...|+.++++++.+++||+.=| +.++++++.++ +.|+|+|.+.
T Consensus 177 ------~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~DgVmiG 224 (312)
T PRK10550 177 ------RAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCDAVMIG 224 (312)
T ss_pred ------CCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCCCEEEEc
Confidence 0122468999999999999998754 68999999876 5899999983
No 345
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=95.30 E-value=0.15 Score=49.34 Aligned_cols=39 Identities=36% Similarity=0.481 Sum_probs=33.1
Q ss_pred HHHHHHHHHccCccEEEE-eccCHHHHHHHHHhCCcEEEEe
Q 015722 248 WKDVKWLQTITSLPILVK-GVLTAEDASLAIQYGAAGIIVS 287 (402)
Q Consensus 248 ~~~i~~lr~~~~~Pv~vK-~~~~~~da~~a~~aGad~I~vs 287 (402)
.+.++.+|+.++.|+.+. |+.++++++.+. .|+|+++|.
T Consensus 187 ~~~i~~ik~~~~~Pv~vGFGI~~~e~~~~~~-~~aDGvIVG 226 (259)
T PF00290_consen 187 KEFIKRIKKHTDLPVAVGFGISTPEQAKKLA-AGADGVIVG 226 (259)
T ss_dssp HHHHHHHHHTTSS-EEEESSS-SHHHHHHHH-TTSSEEEES
T ss_pred HHHHHHHHhhcCcceEEecCCCCHHHHHHHH-ccCCEEEEC
Confidence 366999999999999998 678999999988 999999994
No 346
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=95.26 E-value=0.14 Score=50.71 Aligned_cols=92 Identities=23% Similarity=0.322 Sum_probs=58.3
Q ss_pred HHHHHHhCCcEEEEecCcccCCCCCcc-hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHH----HcCcCEEEEchHHH
Q 015722 273 ASLAIQYGAAGIIVSNHGARQLDYVPA-TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKAL----ALGASGVFVGRPVP 347 (402)
Q Consensus 273 a~~a~~aGad~I~vsn~gg~~~d~~~~-~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal----~lGAd~V~iGr~~l 347 (402)
++.+.+.|+++|.+.++-|-...-... ..+.+..+++.+.+++|||+.-|=.+-.|+++.. .+|||+|++-.|++
T Consensus 35 v~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P~y 114 (309)
T cd00952 35 VERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGRPMW 114 (309)
T ss_pred HHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECCCcC
Confidence 345678999999996654321111111 1234555666677789999876655666766543 37999999999987
Q ss_pred HhhhcCChHHHHHHHHHHHH
Q 015722 348 FSLAVDGEAGVRKVLQMLRD 367 (402)
Q Consensus 348 ~~~~~~G~~gv~~~i~~l~~ 367 (402)
+.. .++++.++++.+.+
T Consensus 115 ~~~---~~~~l~~yf~~va~ 131 (309)
T cd00952 115 LPL---DVDTAVQFYRDVAE 131 (309)
T ss_pred CCC---CHHHHHHHHHHHHH
Confidence 653 34555555555444
No 347
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=95.23 E-value=0.24 Score=47.77 Aligned_cols=41 Identities=34% Similarity=0.400 Sum_probs=36.0
Q ss_pred cHHHHHHHHHccCccEEEEe-ccCHHHHHHHHHhCCcEEEEe
Q 015722 247 NWKDVKWLQTITSLPILVKG-VLTAEDASLAIQYGAAGIIVS 287 (402)
Q Consensus 247 ~~~~i~~lr~~~~~Pv~vK~-~~~~~da~~a~~aGad~I~vs 287 (402)
..+.++.+|+.++.|+.+.+ +.++++++.+.++|||++++.
T Consensus 186 ~~~~i~~lr~~~~~pi~vgfGI~~~e~~~~~~~~GADgvVvG 227 (256)
T TIGR00262 186 LNELVKRLKAYSAKPVLVGFGISKPEQVKQAIDAGADGVIVG 227 (256)
T ss_pred HHHHHHHHHhhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 45779999999999999985 567999999999999999984
No 348
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=95.23 E-value=0.49 Score=43.24 Aligned_cols=87 Identities=25% Similarity=0.212 Sum_probs=58.9
Q ss_pred HHHHHHHHHc-cCccEEE--EeccCH-HHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhc-CCCeEEEe-c
Q 015722 248 WKDVKWLQTI-TSLPILV--KGVLTA-EDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAK-GRVPVFLD-G 321 (402)
Q Consensus 248 ~~~i~~lr~~-~~~Pv~v--K~~~~~-~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~-~~i~via~-G 321 (402)
.+.++++++. .+.|+++ |..... ..++.+.++|+|+|++.... .+ +.+.++.+..+ .+++++++ =
T Consensus 41 ~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~~------~~---~~~~~~i~~~~~~g~~~~v~~~ 111 (202)
T cd04726 41 MEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVTVLGAA------PL---STIKKAVKAAKKYGKEVQVDLI 111 (202)
T ss_pred HHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEeeC------CH---HHHHHHHHHHHHcCCeEEEEEe
Confidence 4678888886 4778877 333222 35788999999999994311 11 22222322221 25777775 7
Q ss_pred CCCCHHHHHHHHHcCcCEEEEc
Q 015722 322 GVRRGTDVFKALALGASGVFVG 343 (402)
Q Consensus 322 GI~~g~dv~kal~lGAd~V~iG 343 (402)
+..|..++.+++..|+|.|.++
T Consensus 112 ~~~t~~e~~~~~~~~~d~v~~~ 133 (202)
T cd04726 112 GVEDPEKRAKLLKLGVDIVILH 133 (202)
T ss_pred CCCCHHHHHHHHHCCCCEEEEc
Confidence 8999999999888999999985
No 349
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=95.22 E-value=0.081 Score=55.56 Aligned_cols=250 Identities=16% Similarity=0.187 Sum_probs=133.0
Q ss_pred hhhcccccccccC-CC-CCCccceeecCcccCCceeecccccccccCChhhHHHHHHHHHcCCeEEecCCccCCHHHHhh
Q 015722 76 AFSRILFRPRILR-DV-SKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSS 153 (402)
Q Consensus 76 ~~~~~~l~pr~l~-~~-~~~d~st~i~G~~l~~Pi~iAPm~~~~~~~~~ge~ala~aa~~~G~~~~vs~~~~~s~eei~~ 153 (402)
.|||+.|+|.... .. +++|++|++ +..+..||+.|||...+ |..||.+.++.|...++.. +++.++..+
T Consensus 14 tfddvll~p~~~~~~~~~~v~~~t~~-~~~l~~Pi~sa~Mdtvt------~~~MAiaLAr~GGiGvih~--nl~~~~q~~ 84 (479)
T PRK07807 14 TYDDVFLVPSRSDVGSRFDVDLSTAD-GTGTTIPLVVANMTAVA------GRRMAETVARRGGLVVLPQ--DIPIDVVAE 84 (479)
T ss_pred CccceEecccccCccCCCceecccCC-CCccccceeecCCcchh------HHHHHHHHHHCCCceEeeC--CCCHHHHHH
Confidence 6999999998763 34 488999984 88999999999997664 7789999999998877753 455554332
Q ss_pred c----CCCceEE-EEeecCChhHHHHHHHHHHHcCCcEEEEecCCC-CCC-chhHHHhhhcCCCCccccccccccccccC
Q 015722 154 T----GPGIRFF-QLYVTKHRNVDAQLVKRAERAGFKAIALTVDTP-RLG-RREADIKNRFVLPPHLTLKNYEGLYIGKM 226 (402)
Q Consensus 154 ~----~~~~~~~-QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p-~~g-~r~~d~r~~~~~p~~~~~~~~~~~~~~~~ 226 (402)
. .-...+. +...-....-..++++...+.++..+.|+-+.- ..| --.+|++.. +.......+.......+
T Consensus 85 ~l~~VKv~~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~---~~~~~V~diMt~~~itV 161 (479)
T PRK07807 85 VVAWVKSRDLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGV---DRFTQVRDVMSTDLVTL 161 (479)
T ss_pred HHhhcccccccccCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhcC---ccCCCHHHhccCCceEE
Confidence 2 1111110 000111222345566666777877777643211 011 112333210 00000000000000000
Q ss_pred CC-CCchhhHHHhhhh-------cC------CCccHHHHHHHHHccCc-----cEEEE---ec--cCHHHHHHHHHhCCc
Q 015722 227 DK-TDDSGLASYVANQ-------ID------RSLNWKDVKWLQTITSL-----PILVK---GV--LTAEDASLAIQYGAA 282 (402)
Q Consensus 227 ~~-~~~~~~~~~~~~~-------~d------~~~~~~~i~~lr~~~~~-----Pv~vK---~~--~~~~da~~a~~aGad 282 (402)
.. .....+...+... .| .-.+.++|......-.. -+.+. ++ ...+.++.+.++|+|
T Consensus 162 ~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~~~~~~~g~l~V~aav~~~~~~~~~a~~Lv~aGvd 241 (479)
T PRK07807 162 PAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYTPAVDAAGRLRVAAAVGINGDVAAKARALLEAGVD 241 (479)
T ss_pred CCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCCchhhhhhccchHhhhccChhHHHHHHHHHHhCCC
Confidence 00 0000000000000 00 00123333222221100 00111 01 113457788899999
Q ss_pred EEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEc
Q 015722 283 GIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVG 343 (402)
Q Consensus 283 ~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iG 343 (402)
.|.+...-| .+...++.+++|++..+ +++||+ |.|.|.+.+..++.+|||+|-+|
T Consensus 242 ~i~~D~a~~----~~~~~~~~i~~ik~~~p-~~~v~a-gnv~t~~~a~~l~~aGad~v~vg 296 (479)
T PRK07807 242 VLVVDTAHG----HQEKMLEALRAVRALDP-GVPIVA-GNVVTAEGTRDLVEAGADIVKVG 296 (479)
T ss_pred EEEEeccCC----ccHHHHHHHHHHHHHCC-CCeEEe-eccCCHHHHHHHHHcCCCEEEEC
Confidence 999975433 24567788999998763 677777 99999999999999999998744
No 350
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=95.22 E-value=0.16 Score=50.73 Aligned_cols=42 Identities=26% Similarity=0.630 Sum_probs=36.4
Q ss_pred ccHHHHHHHHHccC-ccEEEEe-ccCHHHHHHHHH-hCCcEEEEe
Q 015722 246 LNWKDVKWLQTITS-LPILVKG-VLTAEDASLAIQ-YGAAGIIVS 287 (402)
Q Consensus 246 ~~~~~i~~lr~~~~-~Pv~vK~-~~~~~da~~a~~-aGad~I~vs 287 (402)
..|+.|..+++.++ +||+.-| +.++++++..++ .|+|+|.+.
T Consensus 184 ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~DgVMig 228 (323)
T COG0042 184 ADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGVMIG 228 (323)
T ss_pred cCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCCEEEEc
Confidence 68999999999998 9999865 589999988776 579999984
No 351
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=95.20 E-value=0.16 Score=47.85 Aligned_cols=96 Identities=21% Similarity=0.309 Sum_probs=60.8
Q ss_pred ChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCCcc
Q 015722 168 HRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLN 247 (402)
Q Consensus 168 d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 247 (402)
|.-.+.+..+...+-||..+--+-|-|+..+|..|.--.--+|-. .-+++ .-.-.+
T Consensus 115 D~~etl~Aae~Lv~eGF~VlPY~~dD~v~arrLee~GcaavMPl~-----------------------aPIGS-g~G~~n 170 (262)
T COG2022 115 DPIETLKAAEQLVKEGFVVLPYTTDDPVLARRLEEAGCAAVMPLG-----------------------APIGS-GLGLQN 170 (262)
T ss_pred ChHHHHHHHHHHHhCCCEEeeccCCCHHHHHHHHhcCceEecccc-----------------------ccccC-CcCcCC
Confidence 444455555666667887777777777666665543111001110 00000 011134
Q ss_pred HHHHHHHHHccCccEEEE-eccCHHHHHHHHHhCCcEEEEe
Q 015722 248 WKDVKWLQTITSLPILVK-GVLTAEDASLAIQYGAAGIIVS 287 (402)
Q Consensus 248 ~~~i~~lr~~~~~Pv~vK-~~~~~~da~~a~~aGad~I~vs 287 (402)
...++-+++..++||+|- |+.++.+|..++|.|+|+|-+.
T Consensus 171 ~~~l~iiie~a~VPviVDAGiG~pSdAa~aMElG~DaVL~N 211 (262)
T COG2022 171 PYNLEIIIEEADVPVIVDAGIGTPSDAAQAMELGADAVLLN 211 (262)
T ss_pred HHHHHHHHHhCCCCEEEeCCCCChhHHHHHHhcccceeehh
Confidence 567888899999999995 7889999999999999999774
No 352
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=95.19 E-value=0.17 Score=50.43 Aligned_cols=95 Identities=17% Similarity=0.118 Sum_probs=62.2
Q ss_pred CCCccHHH-HHHHHHcc---CccEEEEeccCH---HHHHHHHHhC--CcEEEEecCcccCCCCCcchHHHHHHHHHHhcC
Q 015722 243 DRSLNWKD-VKWLQTIT---SLPILVKGVLTA---EDASLAIQYG--AAGIIVSNHGARQLDYVPATVMALEEVVQAAKG 313 (402)
Q Consensus 243 d~~~~~~~-i~~lr~~~---~~Pv~vK~~~~~---~da~~a~~aG--ad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~ 313 (402)
+..++.+. .+++++.. ..-+.+-..... +-++.+.++| +|.|++...-| .....++.++.+++..+
T Consensus 75 Hk~~~~e~~~~~v~~~~~~~~~~~~vsvG~~~~d~er~~~L~~a~~~~d~iviD~AhG----hs~~~i~~ik~ir~~~p- 149 (343)
T TIGR01305 75 HKHYSVDEWKAFATNSSPDCLQNVAVSSGSSDNDLEKMTSILEAVPQLKFICLDVANG----YSEHFVEFVKLVREAFP- 149 (343)
T ss_pred eeCCCHHHHHHHHHhhcccccceEEEEeccCHHHHHHHHHHHhcCCCCCEEEEECCCC----cHHHHHHHHHHHHhhCC-
Confidence 44455554 55554422 223333222333 4467778885 99999975322 12456778888888763
Q ss_pred CCeEEEecCCCCHHHHHHHHHcCcCEEEEc
Q 015722 314 RVPVFLDGGVRRGTDVFKALALGASGVFVG 343 (402)
Q Consensus 314 ~i~via~GGI~~g~dv~kal~lGAd~V~iG 343 (402)
. +.+..|.|-|++++..++.+|||+|-+|
T Consensus 150 ~-~~viaGNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 150 E-HTIMAGNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred C-CeEEEecccCHHHHHHHHHcCCCEEEEc
Confidence 3 4555588999999999999999999776
No 353
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=95.18 E-value=3.5 Score=40.44 Aligned_cols=107 Identities=15% Similarity=0.226 Sum_probs=74.4
Q ss_pred cCHHHHHHHH-HhCCcEEEEec---CcccCCCCCcc--hHHHHHHHHHHhcCCCeEEEecCCCCH-HHHHHHHHcCcCEE
Q 015722 268 LTAEDASLAI-QYGAAGIIVSN---HGARQLDYVPA--TVMALEEVVQAAKGRVPVFLDGGVRRG-TDVFKALALGASGV 340 (402)
Q Consensus 268 ~~~~da~~a~-~aGad~I~vsn---~gg~~~d~~~~--~~~~l~~i~~~~~~~i~via~GGI~~g-~dv~kal~lGAd~V 340 (402)
.++++|+.-. +-|+|.+-++. ||-+ .+.| .++.|.+|.+.+ ++|+..=||=..+ +++.|++.+|..=|
T Consensus 156 T~peea~~Fv~~TgvD~LAvaiGt~HG~Y---~~~p~Ld~~~L~~I~~~~--~vPLVLHGgSG~~~e~~~~ai~~GI~Ki 230 (286)
T PRK08610 156 ADPKECQELVEKTGIDALAPALGSVHGPY---KGEPKLGFKEMEEIGLST--GLPLVLHGGTGIPTKDIQKAIPFGTAKI 230 (286)
T ss_pred CCHHHHHHHHHHHCCCEEEeecccccccc---CCCCCCCHHHHHHHHHHH--CCCEEEeCCCCCCHHHHHHHHHCCCeEE
Confidence 5788886654 67999999874 5543 2333 578899999888 7999999987776 67778999999999
Q ss_pred EEchHHHHhhhc-------CC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q 015722 341 FVGRPVPFSLAV-------DG------EAGVRKVLQMLRDEFELTMALSGCR 379 (402)
Q Consensus 341 ~iGr~~l~~~~~-------~G------~~gv~~~i~~l~~el~~~m~~~G~~ 379 (402)
-|+|-+-.+... .. ..-.....+.+++.++..|..+|..
T Consensus 231 Ni~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~fgs~ 282 (286)
T PRK08610 231 NVNTENQIASAKAVRDVLNNDKEVYDPRKYLGPAREAIKETVKGKIKEFGTS 282 (286)
T ss_pred EeccHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999976443210 00 1123344456667777777777654
No 354
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=95.17 E-value=0.1 Score=49.23 Aligned_cols=72 Identities=21% Similarity=0.127 Sum_probs=55.6
Q ss_pred HHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHH--cCcCEEEEchHHH
Q 015722 270 AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALA--LGASGVFVGRPVP 347 (402)
Q Consensus 270 ~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~--lGAd~V~iGr~~l 347 (402)
.+.|+...+.|+|.+.+..--+. .+.+...+.+.++.+. +|+.+.|||||.+|+.+++. .||+-|.+|++.+
T Consensus 39 ~~~a~~~~~~g~~~l~ivDLd~~--~~~~~n~~~i~~i~~~----~~v~vgGGirs~e~~~~~~~~l~~a~rvvigT~a~ 112 (221)
T TIGR00734 39 DDAAKVIEEIGARFIYIADLDRI--VGLGDNFSLLSKLSKR----VELIADCGVRSPEDLETLPFTLEFASRVVVATETL 112 (221)
T ss_pred HHHHHHHHHcCCCEEEEEEcccc--cCCcchHHHHHHHHhh----CcEEEcCccCCHHHHHHHHhhhccceEEeecChhh
Confidence 35677788999999998643221 1445677888888874 48999999999999999876 2799999999654
No 355
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=95.17 E-value=3.5 Score=40.40 Aligned_cols=107 Identities=15% Similarity=0.217 Sum_probs=72.1
Q ss_pred cCHHHHHHH-HHhCCcEEEEec---CcccCCCCCcc--hHHHHHHHHHHhcCCCeEEEecCCCC-HHHHHHHHHcCcCEE
Q 015722 268 LTAEDASLA-IQYGAAGIIVSN---HGARQLDYVPA--TVMALEEVVQAAKGRVPVFLDGGVRR-GTDVFKALALGASGV 340 (402)
Q Consensus 268 ~~~~da~~a-~~aGad~I~vsn---~gg~~~d~~~~--~~~~l~~i~~~~~~~i~via~GGI~~-g~dv~kal~lGAd~V 340 (402)
.++++|+.- .+.|+|.+-++. ||.+ .+.+ .++.|.+|++.+ ++|+..=||=.. -+++.|++.+|..=|
T Consensus 155 T~pe~a~~Fv~~TgvD~LAvaiGt~HG~y---~~~p~Ld~~~L~~i~~~~--~vPLVlHGgSG~~~e~~~~ai~~Gi~Ki 229 (284)
T PRK12857 155 TDPEEARRFVEETGVDALAIAIGTAHGPY---KGEPKLDFDRLAKIKELV--NIPIVLHGSSGVPDEAIRKAISLGVRKV 229 (284)
T ss_pred CCHHHHHHHHHHHCCCEEeeccCcccccc---CCCCcCCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEE
Confidence 468887665 467999999873 5543 2333 578899999987 789888775444 466778999999999
Q ss_pred EEchHHHHhhhc-------C--C----hHHHHHHHHHHHHHHHHHHHHhCCC
Q 015722 341 FVGRPVPFSLAV-------D--G----EAGVRKVLQMLRDEFELTMALSGCR 379 (402)
Q Consensus 341 ~iGr~~l~~~~~-------~--G----~~gv~~~i~~l~~el~~~m~~~G~~ 379 (402)
-|+|-+..+... . + ..-.....+.+++.++..|..+|..
T Consensus 230 Ni~T~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 281 (284)
T PRK12857 230 NIDTNIREAFVARLREVLEKNPDEIDPRKILGPAREAAKEVIREKIRLFGSA 281 (284)
T ss_pred EeCcHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999976543210 0 0 1123344455666777777777653
No 356
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=95.16 E-value=3.5 Score=40.31 Aligned_cols=184 Identities=14% Similarity=0.086 Sum_probs=106.6
Q ss_pred CceeecccccccccCChhhHHHHHHHHHcCCeEEe--c---CCccCCHHHHh-------hcCC--CceEEEEeecCChhH
Q 015722 106 MPIMIAPTAFQKMAHPEGECATARAASAAGTIMTL--S---SWATSSVEEVS-------STGP--GIRFFQLYVTKHRNV 171 (402)
Q Consensus 106 ~Pi~iAPm~~~~~~~~~ge~ala~aa~~~G~~~~v--s---~~~~~s~eei~-------~~~~--~~~~~QLy~~~d~~~ 171 (402)
.|.++.|+.-.+-.+.++-..+.+...+.|+...+ + ++...|.||.. +... -+.+.++. . +.+.
T Consensus 5 ~~a~vTPf~~dg~iD~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~-~-~t~~ 82 (289)
T cd00951 5 LSFPVTHFDADGSFDEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAG-Y-GTAT 82 (289)
T ss_pred EEEeecCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecC-C-CHHH
Confidence 35567777544445555556788888888975543 2 23455776632 2222 35566764 3 6777
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCCccHHHH
Q 015722 172 DAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDV 251 (402)
Q Consensus 172 ~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i 251 (402)
..+++++++++|++++.+. .|.+. + . +.+-..+..
T Consensus 83 ~i~~a~~a~~~Gad~v~~~--pP~y~------------~--~-----------------------------~~~~i~~~f 117 (289)
T cd00951 83 AIAYAQAAEKAGADGILLL--PPYLT------------E--A-----------------------------PQEGLYAHV 117 (289)
T ss_pred HHHHHHHHHHhCCCEEEEC--CCCCC------------C--C-----------------------------CHHHHHHHH
Confidence 7889999999999999872 23210 0 0 000012445
Q ss_pred HHHHHccCccEEEEe----ccCHHHHHHHHH-h-CCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCC
Q 015722 252 KWLQTITSLPILVKG----VLTAEDASLAIQ-Y-GAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRR 325 (402)
Q Consensus 252 ~~lr~~~~~Pv~vK~----~~~~~da~~a~~-a-Gad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~ 325 (402)
+.+.+.+++|+++=. ..+++..+++.+ . .+-+|.-+ ...+..+.++.+..+++..|+. | -.+
T Consensus 118 ~~v~~~~~~pi~lYn~~g~~l~~~~l~~L~~~~pnivgiKds----------~~d~~~~~~~~~~~~~~~~v~~-G-~~~ 185 (289)
T cd00951 118 EAVCKSTDLGVIVYNRANAVLTADSLARLAERCPNLVGFKDG----------VGDIELMRRIVAKLGDRLLYLG-G-LPT 185 (289)
T ss_pred HHHHhcCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEEEEEeC----------CCCHHHHHHHHHhcCCCeEEEe-C-CCc
Confidence 666667788988753 256777777765 3 23334332 1234455556555544443332 3 322
Q ss_pred HHH-HHHHHHcCcCEEEEchHHHH
Q 015722 326 GTD-VFKALALGASGVFVGRPVPF 348 (402)
Q Consensus 326 g~d-v~kal~lGAd~V~iGr~~l~ 348 (402)
.++ +..++.+||+++.-|.+-++
T Consensus 186 ~d~~~~~~l~~Ga~G~is~~~n~~ 209 (289)
T cd00951 186 AEVFALAYLAMGVPTYSSAVFNFV 209 (289)
T ss_pred chHhHHHHHHCCCCEEEechhhhh
Confidence 233 57888999999988875443
No 357
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=95.09 E-value=0.19 Score=49.51 Aligned_cols=90 Identities=26% Similarity=0.370 Sum_probs=57.2
Q ss_pred HHHHHHhCCcEEEEecCcccCCCCCcc---hHHHHHHHHHHhcCCCeEEEecCCCCHHHHH----HHHHcCcCEEEEchH
Q 015722 273 ASLAIQYGAAGIIVSNHGARQLDYVPA---TVMALEEVVQAAKGRVPVFLDGGVRRGTDVF----KALALGASGVFVGRP 345 (402)
Q Consensus 273 a~~a~~aGad~I~vsn~gg~~~d~~~~---~~~~l~~i~~~~~~~i~via~GGI~~g~dv~----kal~lGAd~V~iGr~ 345 (402)
++.+++.|+|+|++.++.|-. ...+ ..+.+..+++.+.+++|||+--|=.+-.+++ .|-.+|||++++-.|
T Consensus 31 v~~li~~Gv~gi~~~GttGE~--~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~Gad~il~v~P 108 (299)
T COG0329 31 VEFLIAAGVDGLVVLGTTGES--PTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGADGILVVPP 108 (299)
T ss_pred HHHHHHcCCCEEEECCCCccc--hhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 455788999999996654421 1122 2345666677777889998855544444444 333489999999999
Q ss_pred HHHhhhcCChHHHHHHHHHHHH
Q 015722 346 VPFSLAVDGEAGVRKVLQMLRD 367 (402)
Q Consensus 346 ~l~~~~~~G~~gv~~~i~~l~~ 367 (402)
+++.. .++|+.+.+..+.+
T Consensus 109 yY~k~---~~~gl~~hf~~ia~ 127 (299)
T COG0329 109 YYNKP---SQEGLYAHFKAIAE 127 (299)
T ss_pred CCcCC---ChHHHHHHHHHHHH
Confidence 98753 24555444444433
No 358
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=95.08 E-value=0.24 Score=49.47 Aligned_cols=94 Identities=17% Similarity=0.150 Sum_probs=59.9
Q ss_pred HHHHHHHHccCccEEEEec-cCHH----HHHHHHHhCCcEEEEec---CcccCCCCC-c--chHHHHHHHHHHhcCCCeE
Q 015722 249 KDVKWLQTITSLPILVKGV-LTAE----DASLAIQYGAAGIIVSN---HGARQLDYV-P--ATVMALEEVVQAAKGRVPV 317 (402)
Q Consensus 249 ~~i~~lr~~~~~Pv~vK~~-~~~~----da~~a~~aGad~I~vsn---~gg~~~d~~-~--~~~~~l~~i~~~~~~~i~v 317 (402)
+.++.+++..+.|++++.. .+.+ .++.+.++|+|+|.+.- ++.....+. + ...+.+..+++.+ ++||
T Consensus 91 ~~i~~~~~~~~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~--~iPV 168 (334)
T PRK07565 91 ELIRRAKEAVDIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAV--SIPV 168 (334)
T ss_pred HHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhcc--CCcE
Confidence 4566676767899999974 3443 36777889999999831 111111111 1 1235556666554 6899
Q ss_pred EEe--cCCCCHHHHHHHHH-cCcCEEEEch
Q 015722 318 FLD--GGVRRGTDVFKALA-LGASGVFVGR 344 (402)
Q Consensus 318 ia~--GGI~~g~dv~kal~-lGAd~V~iGr 344 (402)
++- +++....++++++. .|||+|.+-.
T Consensus 169 ~vKl~p~~~~~~~~a~~l~~~G~dgI~~~n 198 (334)
T PRK07565 169 AVKLSPYFSNLANMAKRLDAAGADGLVLFN 198 (334)
T ss_pred EEEeCCCchhHHHHHHHHHHcCCCeEEEEC
Confidence 876 45556678888775 8999987743
No 359
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=95.05 E-value=0.15 Score=51.25 Aligned_cols=104 Identities=19% Similarity=0.134 Sum_probs=66.8
Q ss_pred CceEEEEeecCChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHH
Q 015722 157 GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLAS 236 (402)
Q Consensus 157 ~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (402)
-|.++.|-+..+.+.+.++++.++++|+++|.++-..+.. . + ..-+. ..+ .....++.
T Consensus 212 ~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~---~-~----~~~~~---~~~---------~~gg~SG~-- 269 (344)
T PRK05286 212 VPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLSR---D-G----LKGLP---NAD---------EAGGLSGR-- 269 (344)
T ss_pred CceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCcccc---c-c----ccccc---cCC---------CCCCcccH--
Confidence 5788888765555567889999999999999886443210 0 0 00000 000 00000110
Q ss_pred HhhhhcCCCccHHHHHHHHHcc--CccEE-EEeccCHHHHHHHHHhCCcEEEEe
Q 015722 237 YVANQIDRSLNWKDVKWLQTIT--SLPIL-VKGVLTAEDASLAIQYGAAGIIVS 287 (402)
Q Consensus 237 ~~~~~~d~~~~~~~i~~lr~~~--~~Pv~-vK~~~~~~da~~a~~aGad~I~vs 287 (402)
.+ ....|+.+..+++.+ ++||+ +.|+.+.+|+...+.+|||+|.+.
T Consensus 270 ~~-----~~~~l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~ 318 (344)
T PRK05286 270 PL-----FERSTEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIY 318 (344)
T ss_pred HH-----HHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHHHH
Confidence 01 113678899999988 68988 467899999999999999999874
No 360
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=95.04 E-value=0.073 Score=50.86 Aligned_cols=41 Identities=24% Similarity=0.563 Sum_probs=35.8
Q ss_pred cHHHHHHHHHccCccEEEE-eccCHHHHHHHHHhCCcEEEEe
Q 015722 247 NWKDVKWLQTITSLPILVK-GVLTAEDASLAIQYGAAGIIVS 287 (402)
Q Consensus 247 ~~~~i~~lr~~~~~Pv~vK-~~~~~~da~~a~~aGad~I~vs 287 (402)
+...|+-+++..++||++- |+.+++|+..+++.|+|++-+.
T Consensus 177 n~~~l~~i~e~~~vpVivdAGIgt~sDa~~AmElGaDgVL~n 218 (267)
T CHL00162 177 NLLNLQIIIENAKIPVIIDAGIGTPSEASQAMELGASGVLLN 218 (267)
T ss_pred CHHHHHHHHHcCCCcEEEeCCcCCHHHHHHHHHcCCCEEeec
Confidence 4567899999889999986 6799999999999999999773
No 361
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=94.99 E-value=1.3 Score=44.55 Aligned_cols=126 Identities=22% Similarity=0.338 Sum_probs=74.1
Q ss_pred HHHHHHHHHccCccEEEEecc--CHHH----HHHHHHhCCcEEEEecCcccCCCC-Cc--chHHHHHHHHHHhcCCCeEE
Q 015722 248 WKDVKWLQTITSLPILVKGVL--TAED----ASLAIQYGAAGIIVSNHGARQLDY-VP--ATVMALEEVVQAAKGRVPVF 318 (402)
Q Consensus 248 ~~~i~~lr~~~~~Pv~vK~~~--~~~d----a~~a~~aGad~I~vsn~gg~~~d~-~~--~~~~~l~~i~~~~~~~i~vi 318 (402)
.+.++++-+ ++.||++|-.+ +.++ ++.....|-+-|++--.|.+.... .. ..+..++.+++.. .+|||
T Consensus 190 ~~LL~~va~-~~kPViLk~G~~~ti~E~l~A~e~i~~~GN~~viL~erG~~tf~~~~~~~ldl~ai~~lk~~~--~lPVi 266 (335)
T PRK08673 190 FDLLKEVGK-TNKPVLLKRGMSATIEEWLMAAEYILAEGNPNVILCERGIRTFETATRNTLDLSAVPVIKKLT--HLPVI 266 (335)
T ss_pred HHHHHHHHc-CCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCcChhhhhHHHHHHHHHhc--CCCEE
Confidence 345566544 68999999653 5666 345567788777776555544422 12 2345667666554 58999
Q ss_pred EecCCCCH------HHHHHHHHcCcCEEEEchHHHH--hhhcCChHHH-HHHHHHHHHHHHHHHHHhC
Q 015722 319 LDGGVRRG------TDVFKALALGASGVFVGRPVPF--SLAVDGEAGV-RKVLQMLRDEFELTMALSG 377 (402)
Q Consensus 319 a~GGI~~g------~dv~kal~lGAd~V~iGr~~l~--~~~~~G~~gv-~~~i~~l~~el~~~m~~~G 377 (402)
++..=.+| .-...|+++|||+++|-.-+-- ++ +.|...+ .+-++.|.++++..-..+|
T Consensus 267 ~d~sH~~G~~~~v~~~a~AAvA~GAdGliIE~H~~pd~al-sD~~~sl~p~e~~~lv~~i~~i~~~~g 333 (335)
T PRK08673 267 VDPSHATGKRDLVEPLALAAVAAGADGLIVEVHPDPEKAL-SDGPQSLTPEEFEELMKKLRAIAEALG 333 (335)
T ss_pred EeCCCCCccccchHHHHHHHHHhCCCEEEEEecCCcccCC-CcchhcCCHHHHHHHHHHHHHHHHHhC
Confidence 87654444 4567888999999999873321 11 2332110 1224455555555555544
No 362
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=94.95 E-value=0.2 Score=49.22 Aligned_cols=92 Identities=22% Similarity=0.340 Sum_probs=58.5
Q ss_pred HHHHHHhCCcEEEEecCcccCCCCCcc-hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHH----HHHcCcCEEEEchHHH
Q 015722 273 ASLAIQYGAAGIIVSNHGARQLDYVPA-TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFK----ALALGASGVFVGRPVP 347 (402)
Q Consensus 273 a~~a~~aGad~I~vsn~gg~~~d~~~~-~~~~l~~i~~~~~~~i~via~GGI~~g~dv~k----al~lGAd~V~iGr~~l 347 (402)
++.+.+.|+|+|.+.++.|-...-... -.+.+..+++.+++++||++.=|- +-.++++ +-.+|||++++-.|++
T Consensus 32 i~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~-~t~~ai~~a~~a~~~Gadav~~~pP~y 110 (296)
T TIGR03249 32 IEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGG-NTSDAIEIARLAEKAGADGYLLLPPYL 110 (296)
T ss_pred HHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCc-cHHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 455778999999997654422111111 123455566677778999887663 4555543 3348999999999987
Q ss_pred HhhhcCChHHHHHHHHHHHHH
Q 015722 348 FSLAVDGEAGVRKVLQMLRDE 368 (402)
Q Consensus 348 ~~~~~~G~~gv~~~i~~l~~e 368 (402)
+.. .++++.++++.+.+.
T Consensus 111 ~~~---s~~~i~~~f~~v~~a 128 (296)
T TIGR03249 111 ING---EQEGLYAHVEAVCES 128 (296)
T ss_pred CCC---CHHHHHHHHHHHHhc
Confidence 643 356665665555443
No 363
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=94.92 E-value=2 Score=43.32 Aligned_cols=128 Identities=17% Similarity=0.268 Sum_probs=76.1
Q ss_pred HHHHHHHHHccCccEEEEec--cCHHH----HHHHHHhCCcEEEEecCcccCCCC----CcchHHHHHHHHHHhcCCCeE
Q 015722 248 WKDVKWLQTITSLPILVKGV--LTAED----ASLAIQYGAAGIIVSNHGARQLDY----VPATVMALEEVVQAAKGRVPV 317 (402)
Q Consensus 248 ~~~i~~lr~~~~~Pv~vK~~--~~~~d----a~~a~~aGad~I~vsn~gg~~~d~----~~~~~~~l~~i~~~~~~~i~v 317 (402)
.+.++++.+ ++.||++|-. .+.++ ++...+.|-.-|++--.|-|.... -...+..++.+++.. .+||
T Consensus 198 ~~LL~~va~-t~kPVllk~G~~~t~ee~~~A~e~i~~~Gn~~viL~erG~rtf~s~y~~~~~dl~ai~~lk~~~--~lPV 274 (352)
T PRK13396 198 FSLLKKVGA-QDKPVLLKRGMAATIDEWLMAAEYILAAGNPNVILCERGIRTFDRQYTRNTLDLSVIPVLRSLT--HLPI 274 (352)
T ss_pred HHHHHHHHc-cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEecCCccCcCCCCCCCcCHHHHHHHHHhh--CCCE
Confidence 455777755 6899999954 36766 455567798888876555444421 233567788777655 6899
Q ss_pred EEec----CCC--CHHHHHHHHHcCcCEEEEchHHHHh-hhcCChHH-HHHHHHHHHHHHHHHHHHhCC
Q 015722 318 FLDG----GVR--RGTDVFKALALGASGVFVGRPVPFS-LAVDGEAG-VRKVLQMLRDEFELTMALSGC 378 (402)
Q Consensus 318 ia~G----GI~--~g~dv~kal~lGAd~V~iGr~~l~~-~~~~G~~g-v~~~i~~l~~el~~~m~~~G~ 378 (402)
|+|- |.+ ...-...|+++|||+++|=.-+--. ..+.|... -.+-++.|.++++..-..+|.
T Consensus 275 i~DpsH~~G~sd~~~~~a~AAva~GAdGliIE~H~~pd~AlsD~~qsl~p~~~~~l~~~i~~i~~~~g~ 343 (352)
T PRK13396 275 MIDPSHGTGKSEYVPSMAMAAIAAGTDSLMIEVHPNPAKALSDGPQSLTPDRFDRLMQELAVIGKTVGR 343 (352)
T ss_pred EECCcccCCcHHHHHHHHHHHHhhCCCeEEEEecCCcccCCChhhhcCCHHHHHHHHHHHHHHHHHhCC
Confidence 9983 322 2344557888999999998733211 01122211 012344555666666555553
No 364
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=94.84 E-value=0.23 Score=48.64 Aligned_cols=92 Identities=11% Similarity=0.120 Sum_probs=56.8
Q ss_pred HHHHHHhC-CcEEEEecCcccCCCCCcc-hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHH----HHHcCcCEEEEchHH
Q 015722 273 ASLAIQYG-AAGIIVSNHGARQLDYVPA-TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFK----ALALGASGVFVGRPV 346 (402)
Q Consensus 273 a~~a~~aG-ad~I~vsn~gg~~~d~~~~-~~~~l~~i~~~~~~~i~via~GGI~~g~dv~k----al~lGAd~V~iGr~~ 346 (402)
++.+.+.| +++|.+.++-|-...-... ..+.+..+++.+.+++||++.=|=.+-.|+++ +-.+|||+|++..|+
T Consensus 27 i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v~~P~ 106 (290)
T TIGR00683 27 IRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPF 106 (290)
T ss_pred HHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 45677889 9999997654421111111 12345556666667899987644444555553 334799999999998
Q ss_pred HHhhhcCChHHHHHHHHHHHH
Q 015722 347 PFSLAVDGEAGVRKVLQMLRD 367 (402)
Q Consensus 347 l~~~~~~G~~gv~~~i~~l~~ 367 (402)
++.. .++++.++++.+.+
T Consensus 107 y~~~---~~~~i~~yf~~v~~ 124 (290)
T TIGR00683 107 YYKF---SFPEIKHYYDTIIA 124 (290)
T ss_pred CCCC---CHHHHHHHHHHHHh
Confidence 7753 24555555555543
No 365
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=94.82 E-value=0.24 Score=49.40 Aligned_cols=66 Identities=21% Similarity=0.139 Sum_probs=50.1
Q ss_pred HHHHHHHH--hCCcEEEEec-CcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEc
Q 015722 271 EDASLAIQ--YGAAGIIVSN-HGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVG 343 (402)
Q Consensus 271 ~da~~a~~--aGad~I~vsn-~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iG 343 (402)
+-+..+.+ +|+|.|++.. ||- ....++.+++|++.++ +++||+ |.|-|++-+...+.+|||+|=+|
T Consensus 111 er~~~L~~~~~g~D~iviD~AhGh-----s~~~i~~ik~ik~~~P-~~~vIa-GNV~T~e~a~~Li~aGAD~vKVG 179 (346)
T PRK05096 111 EKTKQILALSPALNFICIDVANGY-----SEHFVQFVAKAREAWP-DKTICA-GNVVTGEMVEELILSGADIVKVG 179 (346)
T ss_pred HHHHHHHhcCCCCCEEEEECCCCc-----HHHHHHHHHHHHHhCC-CCcEEE-ecccCHHHHHHHHHcCCCEEEEc
Confidence 33566666 5999999974 442 2456788899988774 577666 99999999999889999998544
No 366
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=94.78 E-value=0.13 Score=53.92 Aligned_cols=248 Identities=14% Similarity=0.182 Sum_probs=134.5
Q ss_pred hhhcccccccccC-CC-CCCccceeecCcccCCceeecccccccccCChhhHHHHHHHHHcCCeEEecCCccCCHHHHhh
Q 015722 76 AFSRILFRPRILR-DV-SKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSS 153 (402)
Q Consensus 76 ~~~~~~l~pr~l~-~~-~~~d~st~i~G~~l~~Pi~iAPm~~~~~~~~~ge~ala~aa~~~G~~~~vs~~~~~s~eei~~ 153 (402)
.|||+.|+|.... .. +++|++|.+ ..++..||+.|||-..+ |-.||.+.++.|...++.. ++++++.++
T Consensus 13 tfddvll~p~~~~~~~~~~v~~~t~~-~~~l~~P~vsa~mdtvT------e~~MAi~~A~~GGigvIh~--n~~i~~qae 83 (475)
T TIGR01303 13 TYNDVFMVPSRSEVGSRFDVDLSTAD-GTGTTIPLVVANMTAVA------GRRMAETVARRGGIVILPQ--DLPIPAVKQ 83 (475)
T ss_pred CccceEEccCccCccCCCceeecccc-cCccccceeeccchhhH------HHHHHHHHHHCCCEEEEeC--CCCHHHHHH
Confidence 6999999998753 33 488999884 57899999999996554 8899999999999999864 577766443
Q ss_pred cCC----Cc----eEEEEeecCChhHHHHHHHHHHHcCCcEEEEecCCCCCC-chhHHHhhhcCCCCccccccccccccc
Q 015722 154 TGP----GI----RFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLG-RREADIKNRFVLPPHLTLKNYEGLYIG 224 (402)
Q Consensus 154 ~~~----~~----~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g-~r~~d~r~~~~~p~~~~~~~~~~~~~~ 224 (402)
.-. .. ..+.+. ...-..++++...+.+...+.|+-+.-..| --.+|++.. +.......+......
T Consensus 84 ~v~~VKv~eim~~~pvtv~---p~~tI~eA~~lm~~~~~~~~vVvD~gklvGIVT~rDL~~~---~~~~~V~dIMt~~li 157 (475)
T TIGR01303 84 TVAFVKSRDLVLDTPITLA---PHDTVSDAMALIHKRAHGAAVVILEDRPVGLVTDSDLLGV---DRFTQVRDIMSTDLV 157 (475)
T ss_pred HHhhcchhhccccCCeEEC---CCCCHHHHHHHHHhcCCeEEEEEECCEEEEEEEHHHhhcC---CCCCCHHHHccCCce
Confidence 211 00 112222 122344566666667776665532210011 112333210 000000000000000
Q ss_pred cCCC-CCchhhHHHhhhh-------cC------CCccHHHHHHHHHccCc-----cEEEE---ec--cCHHHHHHHHHhC
Q 015722 225 KMDK-TDDSGLASYVANQ-------ID------RSLNWKDVKWLQTITSL-----PILVK---GV--LTAEDASLAIQYG 280 (402)
Q Consensus 225 ~~~~-~~~~~~~~~~~~~-------~d------~~~~~~~i~~lr~~~~~-----Pv~vK---~~--~~~~da~~a~~aG 280 (402)
.... .....+...+... .+ .-.+..+|......-.. -+.+. ++ ...+-++.+.++|
T Consensus 158 tv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~~~~~d~~grl~Vgaav~~~~~~~~ra~~Lv~aG 237 (475)
T TIGR01303 158 TAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIYTPATDAAGRLRIGAAVGINGDVGGKAKALLDAG 237 (475)
T ss_pred EeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhCCchhhhccCceehheeeeCccHHHHHHHHHHhC
Confidence 0000 0000000000000 00 00123333332222100 01111 11 1135578889999
Q ss_pred CcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEch
Q 015722 281 AAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGR 344 (402)
Q Consensus 281 ad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr 344 (402)
+|.|++...-|+ .....+.++.|++.. .++|||+ |.+.|.+.+..++.+|||+|-||-
T Consensus 238 Vd~i~~D~a~g~----~~~~~~~i~~i~~~~-~~~~vi~-g~~~t~~~~~~l~~~G~d~i~vg~ 295 (475)
T TIGR01303 238 VDVLVIDTAHGH----QVKMISAIKAVRALD-LGVPIVA-GNVVSAEGVRDLLEAGANIIKVGV 295 (475)
T ss_pred CCEEEEeCCCCC----cHHHHHHHHHHHHHC-CCCeEEE-eccCCHHHHHHHHHhCCCEEEECC
Confidence 999999753343 245567888888765 3799999 779999999999999999988653
No 367
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=94.77 E-value=0.19 Score=52.89 Aligned_cols=251 Identities=16% Similarity=0.212 Sum_probs=134.7
Q ss_pred hhhccccccccc-CCCCCCccceeec-CcccCCceeecccccccccCChhhHHHHHHHHHcCCeEEecCCccCCHHHHhh
Q 015722 76 AFSRILFRPRIL-RDVSKIDMTTTVL-GFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSS 153 (402)
Q Consensus 76 ~~~~~~l~pr~l-~~~~~~d~st~i~-G~~l~~Pi~iAPm~~~~~~~~~ge~ala~aa~~~G~~~~vs~~~~~s~eei~~ 153 (402)
.|||+.|+|... ...+++|++|.+. +..+..||+-|||...+ +..|+.+.++.|...+++. ++++++..+
T Consensus 10 t~ddv~l~p~~~~~~~~~~~~~t~l~~~~~~~~Piv~a~m~~vT------~~ela~ava~~GglG~i~~--~~~~e~~~~ 81 (486)
T PRK05567 10 TFDDVLLVPAHSEVLPNDVDLSTQLTKNIRLNIPLLSAAMDTVT------EARMAIAMAREGGIGVIHK--NMSIEEQAE 81 (486)
T ss_pred CccceEecccccCcCcccccccchhhhhcCcCcCEEeCCCCCcC------HHHHHHHHHhCCCCCEecC--CCCHHHHHH
Confidence 599999999865 3446789998875 57788999999998765 5678888888888888863 455655322
Q ss_pred c----C--CCceEEEEeecCChhHHHHHHHHHHHcCCcEEEEecCCCC-CC-chhHHHhhhcCCCCccccccccc-cccc
Q 015722 154 T----G--PGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPR-LG-RREADIKNRFVLPPHLTLKNYEG-LYIG 224 (402)
Q Consensus 154 ~----~--~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~-~g-~r~~d~r~~~~~p~~~~~~~~~~-~~~~ 224 (402)
. . .....-++..........++++...+.++..+.|.-+.-. .| -..+|++..-.... ....+.. ....
T Consensus 82 ~I~~vk~~~dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~~~~~~--~V~dim~~~~~v 159 (486)
T PRK05567 82 EVRKVKRSESGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFETDLSQ--PVSEVMTKERLV 159 (486)
T ss_pred HHHHhhhhhhcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhcccCCC--cHHHHcCCCCCE
Confidence 1 1 1100011111112234456666667778777766422100 01 11233321100000 0000000 0000
Q ss_pred cCCC-CCchhhHHHhhhh-------cC------CCccHHHHHHHHHc------cCccEEEEecc-----CHHHHHHHHHh
Q 015722 225 KMDK-TDDSGLASYVANQ-------ID------RSLNWKDVKWLQTI------TSLPILVKGVL-----TAEDASLAIQY 279 (402)
Q Consensus 225 ~~~~-~~~~~~~~~~~~~-------~d------~~~~~~~i~~lr~~------~~~Pv~vK~~~-----~~~da~~a~~a 279 (402)
.... .........+... .+ .-.+.+++...... ....+.+.... +.+.++.+.++
T Consensus 160 ~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~aai~~~~~~~e~a~~L~~a 239 (486)
T PRK05567 160 TVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEEFPNACKDEQGRLRVGAAVGVGADNEERAEALVEA 239 (486)
T ss_pred EECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhhCCCcccccCCCEEEEeecccCcchHHHHHHHHHh
Confidence 0000 0000000000000 00 01133332221111 12244555443 24678889999
Q ss_pred CCcEEEEec-CcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEc
Q 015722 280 GAAGIIVSN-HGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVG 343 (402)
Q Consensus 280 Gad~I~vsn-~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iG 343 (402)
|+|.|++.. ||. ....++.+..+++.. +++||++ |+|.|.+++..++.+|||+|-+|
T Consensus 240 gvdvivvD~a~g~-----~~~vl~~i~~i~~~~-p~~~vi~-g~v~t~e~a~~l~~aGad~i~vg 297 (486)
T PRK05567 240 GVDVLVVDTAHGH-----SEGVLDRVREIKAKY-PDVQIIA-GNVATAEAARALIEAGADAVKVG 297 (486)
T ss_pred CCCEEEEECCCCc-----chhHHHHHHHHHhhC-CCCCEEE-eccCCHHHHHHHHHcCCCEEEEC
Confidence 999988764 432 133556777777765 3688888 99999999999999999999875
No 368
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=94.76 E-value=2.5 Score=41.19 Aligned_cols=183 Identities=20% Similarity=0.192 Sum_probs=105.3
Q ss_pred CceeecccccccccCChhhHHHHHHHHHcCCeEEe--cC---CccCCHHHHh-------hcCC--CceEEEEeecCChhH
Q 015722 106 MPIMIAPTAFQKMAHPEGECATARAASAAGTIMTL--SS---WATSSVEEVS-------STGP--GIRFFQLYVTKHRNV 171 (402)
Q Consensus 106 ~Pi~iAPm~~~~~~~~~ge~ala~aa~~~G~~~~v--s~---~~~~s~eei~-------~~~~--~~~~~QLy~~~d~~~ 171 (402)
.|.++.|+.-.+-.+.++-..+.+-..+.|+...+ ++ +.+.|.+|-. +..+ -+.++++- ..+.+.
T Consensus 6 ~~~~~TPf~~dg~id~~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~-~~st~~ 84 (289)
T PF00701_consen 6 FPALITPFNADGSIDEDALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVG-ANSTEE 84 (289)
T ss_dssp EEEE---BETTSSB-HHHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEE-SSSHHH
T ss_pred eeeeeCCCCCCcCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCc-chhHHH
Confidence 34556776444434444455777878888885544 22 3445666532 2222 35666764 446778
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCCccHHHH
Q 015722 172 DAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDV 251 (402)
Q Consensus 172 ~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i 251 (402)
..++++.++++|++++.+.. |... + .+ ..-..+..
T Consensus 85 ~i~~a~~a~~~Gad~v~v~~--P~~~------------~--~s-----------------------------~~~l~~y~ 119 (289)
T PF00701_consen 85 AIELARHAQDAGADAVLVIP--PYYF------------K--PS-----------------------------QEELIDYF 119 (289)
T ss_dssp HHHHHHHHHHTT-SEEEEEE--STSS------------S--CC-----------------------------HHHHHHHH
T ss_pred HHHHHHHHhhcCceEEEEec--cccc------------c--ch-----------------------------hhHHHHHH
Confidence 88899999999999998743 3220 0 00 00012445
Q ss_pred HHHHHccCccEEEEec-------cCHHHHHHHHHhC-CcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCC
Q 015722 252 KWLQTITSLPILVKGV-------LTAEDASLAIQYG-AAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGV 323 (402)
Q Consensus 252 ~~lr~~~~~Pv~vK~~-------~~~~da~~a~~aG-ad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI 323 (402)
+.+.+.+++|+++=.. .+++...++.+.. +-+|..+. ..+..+.++.+...+++.|+ +|
T Consensus 120 ~~ia~~~~~pi~iYn~P~~tg~~ls~~~l~~L~~~~nv~giK~s~----------~~~~~~~~~~~~~~~~~~v~-~G-- 186 (289)
T PF00701_consen 120 RAIADATDLPIIIYNNPARTGNDLSPETLARLAKIPNVVGIKDSS----------GDLERLIQLLRAVGPDFSVF-CG-- 186 (289)
T ss_dssp HHHHHHSSSEEEEEEBHHHHSSTSHHHHHHHHHTSTTEEEEEESS----------SBHHHHHHHHHHSSTTSEEE-ES--
T ss_pred HHHHhhcCCCEEEEECCCccccCCCHHHHHHHhcCCcEEEEEcCc----------hhHHHHHHHhhhcccCeeee-cc--
Confidence 6777778899988643 3556666666532 33333321 22344555666655566554 44
Q ss_pred CCHHHHHHHHHcCcCEEEEchHHHH
Q 015722 324 RRGTDVFKALALGASGVFVGRPVPF 348 (402)
Q Consensus 324 ~~g~dv~kal~lGAd~V~iGr~~l~ 348 (402)
....+..++.+|+++++.+.+.++
T Consensus 187 -~d~~~~~~l~~G~~G~is~~~n~~ 210 (289)
T PF00701_consen 187 -DDELLLPALAAGADGFISGLANVF 210 (289)
T ss_dssp -SGGGHHHHHHTTSSEEEESGGGTH
T ss_pred -ccccccccccccCCEEEEcccccC
Confidence 455688999999999999987543
No 369
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=94.76 E-value=4.8 Score=40.59 Aligned_cols=112 Identities=10% Similarity=0.189 Sum_probs=76.4
Q ss_pred cCHHHHHHH-HHhCCcEEEEec---CcccCCCCCc----chHHHHHHHHHHhcCCCeEEEecCCC---------------
Q 015722 268 LTAEDASLA-IQYGAAGIIVSN---HGARQLDYVP----ATVMALEEVVQAAKGRVPVFLDGGVR--------------- 324 (402)
Q Consensus 268 ~~~~da~~a-~~aGad~I~vsn---~gg~~~d~~~----~~~~~l~~i~~~~~~~i~via~GGI~--------------- 324 (402)
.++++|+.- .+.|+|.+-++. ||-+.....| -.++.|.+|++.++ ++|+..=||=.
T Consensus 173 T~PeeA~~Fv~~TgvD~LAvaiGT~HG~Yk~~~~p~~~~LdfdrL~eI~~~v~-~vPLVLHGgSG~~~~~~~~~~~~g~~ 251 (347)
T PRK09196 173 TDPEEAADFVKKTQVDALAIAIGTSHGAYKFTRKPTGDVLAIDRIKEIHARLP-NTHLVMHGSSSVPQELLDIINEYGGD 251 (347)
T ss_pred CCHHHHHHHHHHhCcCeEhhhhccccCCCCCCCCCChhhccHHHHHHHHhcCC-CCCEEEeCCCCCCHHHHHHHHHhcCC
Confidence 578887665 478999998874 5544211112 35788999998873 58888877543
Q ss_pred -------CHHHHHHHHHcCcCEEEEchHHHHhhhc-------CC------hHHHHHHHHHHHHHHHHHHHHhCCCC
Q 015722 325 -------RGTDVFKALALGASGVFVGRPVPFSLAV-------DG------EAGVRKVLQMLRDEFELTMALSGCRS 380 (402)
Q Consensus 325 -------~g~dv~kal~lGAd~V~iGr~~l~~~~~-------~G------~~gv~~~i~~l~~el~~~m~~~G~~~ 380 (402)
.-+|+.|++.+|..=|-|+|-+..+... .. ..-.....+.+++.++..|..+|...
T Consensus 252 ~~~~~G~~~e~i~~ai~~GI~KINi~Tdl~~a~~~~i~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~~ 327 (347)
T PRK09196 252 MPETYGVPVEEIQEGIKHGVRKVNIDTDLRLAMTGAIRRFLAENPSEFDPRKYLKPAMEAMKKICKARYEAFGTAG 327 (347)
T ss_pred ccccCCCCHHHHHHHHHCCCceEEeChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3477899999999999999976544221 00 12233445667788888888888653
No 370
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=94.76 E-value=0.18 Score=48.42 Aligned_cols=70 Identities=21% Similarity=0.268 Sum_probs=55.4
Q ss_pred HHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHH
Q 015722 271 EDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPV 346 (402)
Q Consensus 271 ~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~ 346 (402)
+-|+...++||++|.|-.-+. .-..+++.|..+++.+ ++||+.-..|-+..++.++.++|||+|.+=-.+
T Consensus 65 ~~A~~y~~~GA~aISVlTe~~----~F~Gs~~~l~~v~~~v--~~PvL~KDFIid~~QI~ea~~~GADavLLI~~~ 134 (247)
T PRK13957 65 QIAKTYETLGASAISVLTDQS----YFGGSLEDLKSVSSEL--KIPVLRKDFILDEIQIREARAFGASAILLIVRI 134 (247)
T ss_pred HHHHHHHHCCCcEEEEEcCCC----cCCCCHHHHHHHHHhc--CCCEEeccccCCHHHHHHHHHcCCCEEEeEHhh
Confidence 457788999999998864321 1123567888888877 799999999999999999999999999665433
No 371
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=94.74 E-value=0.61 Score=45.08 Aligned_cols=41 Identities=32% Similarity=0.308 Sum_probs=34.5
Q ss_pred cHHHHHHHHHccCccEEEEe-ccCHHHHHHHHHhCCcEEEEec
Q 015722 247 NWKDVKWLQTITSLPILVKG-VLTAEDASLAIQYGAAGIIVSN 288 (402)
Q Consensus 247 ~~~~i~~lr~~~~~Pv~vK~-~~~~~da~~a~~aGad~I~vsn 288 (402)
..+.++.+|+.++.|+++.. +.++++++.+.+. ||+++|..
T Consensus 188 ~~~~i~~vk~~~~~pv~vGfGI~~~e~v~~~~~~-ADGviVGS 229 (258)
T PRK13111 188 LAELVARLKAHTDLPVAVGFGISTPEQAAAIAAV-ADGVIVGS 229 (258)
T ss_pred HHHHHHHHHhcCCCcEEEEcccCCHHHHHHHHHh-CCEEEEcH
Confidence 34679999999899999974 5799999999976 99999953
No 372
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=94.70 E-value=4.8 Score=40.53 Aligned_cols=112 Identities=13% Similarity=0.205 Sum_probs=77.1
Q ss_pred cCHHHHHHH-HHhCCcEEEEec---CcccCCCCCc----chHHHHHHHHHHhcCCCeEEEecCCCCH-------------
Q 015722 268 LTAEDASLA-IQYGAAGIIVSN---HGARQLDYVP----ATVMALEEVVQAAKGRVPVFLDGGVRRG------------- 326 (402)
Q Consensus 268 ~~~~da~~a-~~aGad~I~vsn---~gg~~~d~~~----~~~~~l~~i~~~~~~~i~via~GGI~~g------------- 326 (402)
.++++|+.- .+.|+|.+-++. ||-+.....| -.++.|.+|++.+ +++|+..=||=..+
T Consensus 171 T~PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~Ld~~rL~eI~~~v-~~vPLVLHGgSG~p~~~~~~~~~~~~~ 249 (347)
T TIGR01521 171 TDPEEAADFVKKTKVDALAVAIGTSHGAYKFTRKPTGEVLAIQRIEEIHARL-PDTHLVMHGSSSVPQEWLDIINEYGGE 249 (347)
T ss_pred CCHHHHHHHHHHHCcCEEehhcccccCCcCCCCCCChhhcCHHHHHHHHccC-CCCCEEEeCCCCCchHhhHHHHhhccc
Confidence 578887664 468999999873 5544211112 3577899998887 35999998876555
Q ss_pred ---------HHHHHHHHcCcCEEEEchHHHHhhhc-------CC------hHHHHHHHHHHHHHHHHHHHHhCCCC
Q 015722 327 ---------TDVFKALALGASGVFVGRPVPFSLAV-------DG------EAGVRKVLQMLRDEFELTMALSGCRS 380 (402)
Q Consensus 327 ---------~dv~kal~lGAd~V~iGr~~l~~~~~-------~G------~~gv~~~i~~l~~el~~~m~~~G~~~ 380 (402)
+++.||+.+|..=|-|+|-+-.+... .. ..-.....+.+++.+...|..+|...
T Consensus 250 ~~~~~g~p~e~i~~ai~~GI~KVNi~Tdl~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~a~~~~v~~~i~~~gs~~ 325 (347)
T TIGR01521 250 IKETYGVPVEEIVEGIKYGVRKVNIDTDLRLASTAAFRRFAAQNPSEFDPRKFLKPTVEAMRDVCIARYEAFGTAG 325 (347)
T ss_pred ccccCCCCHHHHHHHHHCCCeeEEeChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 88999999999999999966443211 11 12234445667788888888888654
No 373
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=94.70 E-value=0.34 Score=48.26 Aligned_cols=77 Identities=16% Similarity=0.132 Sum_probs=57.6
Q ss_pred ccEEEEeccCHHH---HHHHHHhC--CcEEEEec-CcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHH
Q 015722 260 LPILVKGVLTAED---ASLAIQYG--AAGIIVSN-HGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKAL 333 (402)
Q Consensus 260 ~Pv~vK~~~~~~d---a~~a~~aG--ad~I~vsn-~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal 333 (402)
+++.+-...+.++ +..+.++| +|.|++.. ||- ....++.++.+++.. ..|++..|.|-+.+++.+++
T Consensus 83 L~v~~SvG~t~e~~~r~~~lv~a~~~~d~i~~D~ahg~-----s~~~~~~i~~i~~~~--p~~~vi~GnV~t~e~a~~l~ 155 (321)
T TIGR01306 83 LFASISVGVKACEYEFVTQLAEEALTPEYITIDIAHGH-----SNSVINMIKHIKTHL--PDSFVIAGNVGTPEAVRELE 155 (321)
T ss_pred cEEEEEcCCCHHHHHHHHHHHhcCCCCCEEEEeCccCc-----hHHHHHHHHHHHHhC--CCCEEEEecCCCHHHHHHHH
Confidence 3333333345554 56678889 79999874 442 245677888888876 56888889999999999999
Q ss_pred HcCcCEEEEc
Q 015722 334 ALGASGVFVG 343 (402)
Q Consensus 334 ~lGAd~V~iG 343 (402)
.+|||+|-+|
T Consensus 156 ~aGad~I~V~ 165 (321)
T TIGR01306 156 NAGADATKVG 165 (321)
T ss_pred HcCcCEEEEC
Confidence 9999999877
No 374
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=94.70 E-value=0.32 Score=48.25 Aligned_cols=41 Identities=20% Similarity=0.567 Sum_probs=35.4
Q ss_pred ccHHHHHHHHHccCccEEEE-eccCHHHHHHHH-HhCCcEEEE
Q 015722 246 LNWKDVKWLQTITSLPILVK-GVLTAEDASLAI-QYGAAGIIV 286 (402)
Q Consensus 246 ~~~~~i~~lr~~~~~Pv~vK-~~~~~~da~~a~-~aGad~I~v 286 (402)
..|+.++.+++.+++||+.= ++.++++++.++ +.|+|+|.+
T Consensus 179 ~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~Vmi 221 (319)
T TIGR00737 179 ANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVMI 221 (319)
T ss_pred hhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEEEE
Confidence 35888999999999999875 468999999998 689999998
No 375
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=94.69 E-value=0.33 Score=47.14 Aligned_cols=92 Identities=23% Similarity=0.175 Sum_probs=63.1
Q ss_pred HHHHHHHHccCccEEEEe---ccCHHHHHHHHHhC-CcEEEEecCcccCCCCCcchHHHHHHHHHHh-------cCCCeE
Q 015722 249 KDVKWLQTITSLPILVKG---VLTAEDASLAIQYG-AAGIIVSNHGARQLDYVPATVMALEEVVQAA-------KGRVPV 317 (402)
Q Consensus 249 ~~i~~lr~~~~~Pv~vK~---~~~~~da~~a~~aG-ad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~-------~~~i~v 317 (402)
+.++.+++..+.|...|. +.+.+++..+.++| +|+|.+.|.+ +...+....+.+.. ..++.|
T Consensus 170 ~a~~~~~~~~~~~~~~~idve~~~~~~~~~~~~~~~~d~irlDs~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~i 242 (281)
T cd00516 170 AAVKALRRWLPELFIALIDVEVDTLEEALEAAKAGGADGIRLDSGS-------PEELDPAVLILKARAHLDGKGLPRVKI 242 (281)
T ss_pred HHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHhcCCCCEEEeCCCC-------hHHHHHHHHHHHHHHhhhhcCCCceEE
Confidence 457777776543344443 35688899999999 9999987742 22222222222221 136889
Q ss_pred EEecCCCCHHHHHHHHHcCcCEEEEchHHHH
Q 015722 318 FLDGGVRRGTDVFKALALGASGVFVGRPVPF 348 (402)
Q Consensus 318 ia~GGI~~g~dv~kal~lGAd~V~iGr~~l~ 348 (402)
+++|||. .+.+.....+|.|.+++|+.+.-
T Consensus 243 ~~Sggi~-~~~i~~~~~~gvd~~gvG~~~~~ 272 (281)
T cd00516 243 EASGGLD-EENIRAYAETGVDVFGVGTLLHS 272 (281)
T ss_pred EEeCCCC-HHHHHHHHHcCCCEEEeCccccc
Confidence 9999997 88888888899999999997653
No 376
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=94.62 E-value=0.36 Score=48.05 Aligned_cols=42 Identities=14% Similarity=0.437 Sum_probs=36.0
Q ss_pred ccHHHHHHHHHccCccEEEEe-ccCHHHHHHHHH-hCCcEEEEe
Q 015722 246 LNWKDVKWLQTITSLPILVKG-VLTAEDASLAIQ-YGAAGIIVS 287 (402)
Q Consensus 246 ~~~~~i~~lr~~~~~Pv~vK~-~~~~~da~~a~~-aGad~I~vs 287 (402)
..|+.++++++.+++||+.=| +.++++++.+.+ .|+|+|.++
T Consensus 181 a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVmiG 224 (321)
T PRK10415 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIG 224 (321)
T ss_pred cChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEEEC
Confidence 368899999999999998754 679999999986 699999883
No 377
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=94.57 E-value=0.29 Score=47.82 Aligned_cols=92 Identities=17% Similarity=0.195 Sum_probs=56.9
Q ss_pred HHHHHHh-CCcEEEEecCcccCCCCCcc-hHHHHHHHHHHhcCCCeEEEecCCCCHHHHH----HHHHcCcCEEEEchHH
Q 015722 273 ASLAIQY-GAAGIIVSNHGARQLDYVPA-TVMALEEVVQAAKGRVPVFLDGGVRRGTDVF----KALALGASGVFVGRPV 346 (402)
Q Consensus 273 a~~a~~a-Gad~I~vsn~gg~~~d~~~~-~~~~l~~i~~~~~~~i~via~GGI~~g~dv~----kal~lGAd~V~iGr~~ 346 (402)
++.+.+. |+++|.+.++.|-...-... ..+.+..+++.+.+++|||+.=|=.+-.|++ .+-.+|||+|++-.|+
T Consensus 27 i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a~~~Gad~v~~~~P~ 106 (288)
T cd00954 27 VDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHAEELGYDAISAITPF 106 (288)
T ss_pred HHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 4556778 99999997664432111111 2234555666666789999844433444444 3445899999999998
Q ss_pred HHhhhcCChHHHHHHHHHHHH
Q 015722 347 PFSLAVDGEAGVRKVLQMLRD 367 (402)
Q Consensus 347 l~~~~~~G~~gv~~~i~~l~~ 367 (402)
++.. .++++.++++.+.+
T Consensus 107 y~~~---~~~~i~~~~~~v~~ 124 (288)
T cd00954 107 YYKF---SFEEIKDYYREIIA 124 (288)
T ss_pred CCCC---CHHHHHHHHHHHHH
Confidence 7652 35666555555544
No 378
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=94.54 E-value=0.098 Score=49.57 Aligned_cols=78 Identities=23% Similarity=0.333 Sum_probs=52.2
Q ss_pred HHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHH-----------HHHHHHHcCcCEE
Q 015722 272 DASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGT-----------DVFKALALGASGV 340 (402)
Q Consensus 272 da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~-----------dv~kal~lGAd~V 340 (402)
-++.+.+.|+|+++++.+ .+..+++..+ +--++.++||+ +. .+..++..||+.+
T Consensus 140 ~a~~a~~~g~dgvv~~~~-------------~~~~ir~~~~-~~~~~v~pGI~-~~g~~~~dq~~~~~~~~ai~~Gad~i 204 (230)
T PRK00230 140 LAKLAQEAGLDGVVCSAQ-------------EAAAIREATG-PDFLLVTPGIR-PAGSDAGDQKRVMTPAQAIAAGSDYI 204 (230)
T ss_pred HHHHHHHcCCeEEEeChH-------------HHHHHHhhcC-CceEEEcCCcC-CCCCCcchHHHHhCHHHHHHcCCCEE
Confidence 356678899999988532 2355555543 33457789998 33 4777888999999
Q ss_pred EEchHHHHhhhcCChHHHHHHHHHHHHHHH
Q 015722 341 FVGRPVPFSLAVDGEAGVRKVLQMLRDEFE 370 (402)
Q Consensus 341 ~iGr~~l~~~~~~G~~gv~~~i~~l~~el~ 370 (402)
.+||+...+ +-....++.+.+++.
T Consensus 205 VvGR~I~~a------~dP~~~a~~i~~~i~ 228 (230)
T PRK00230 205 VVGRPITQA------ADPAAAYEAILAEIA 228 (230)
T ss_pred EECCcccCC------CCHHHHHHHHHHHhh
Confidence 999997653 222345566666554
No 379
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=94.53 E-value=0.24 Score=48.28 Aligned_cols=91 Identities=24% Similarity=0.317 Sum_probs=56.2
Q ss_pred HHHHHHHhCCcEEEEecCcccCCCCCcc-hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHH----HHcCcCEEEEchHH
Q 015722 272 DASLAIQYGAAGIIVSNHGARQLDYVPA-TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKA----LALGASGVFVGRPV 346 (402)
Q Consensus 272 da~~a~~aGad~I~vsn~gg~~~d~~~~-~~~~l~~i~~~~~~~i~via~GGI~~g~dv~ka----l~lGAd~V~iGr~~ 346 (402)
.++.+.+.|+|+|.+.++.|-...-... ..+.+..+++.+++++|||+.=|=.+-.++++. -.+|||+|++..|+
T Consensus 27 ~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~~P~ 106 (289)
T PF00701_consen 27 LIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGANSTEEAIELARHAQDAGADAVLVIPPY 106 (289)
T ss_dssp HHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEEEST
T ss_pred HHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCcchhHHHHHHHHHHHhhcCceEEEEeccc
Confidence 3566788999999997654422111111 123455556667778998886555556666543 34899999999998
Q ss_pred HHhhhcCChHHHHHHHHHH
Q 015722 347 PFSLAVDGEAGVRKVLQML 365 (402)
Q Consensus 347 l~~~~~~G~~gv~~~i~~l 365 (402)
++.. .++++.++++.+
T Consensus 107 ~~~~---s~~~l~~y~~~i 122 (289)
T PF00701_consen 107 YFKP---SQEELIDYFRAI 122 (289)
T ss_dssp SSSC---CHHHHHHHHHHH
T ss_pred cccc---hhhHHHHHHHHH
Confidence 7642 345555554444
No 380
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=94.51 E-value=5 Score=39.24 Aligned_cols=179 Identities=16% Similarity=0.122 Sum_probs=105.9
Q ss_pred CceeecccccccccCChhhHHHHHHHHH-cCCeEEe--c---CCccCCHHHHh-------hcCC--CceEEEEeecCChh
Q 015722 106 MPIMIAPTAFQKMAHPEGECATARAASA-AGTIMTL--S---SWATSSVEEVS-------STGP--GIRFFQLYVTKHRN 170 (402)
Q Consensus 106 ~Pi~iAPm~~~~~~~~~ge~ala~aa~~-~G~~~~v--s---~~~~~s~eei~-------~~~~--~~~~~QLy~~~d~~ 170 (402)
.|.++.|+.-.+-.+.++-..+.+-..+ .|+...+ + ++.+.+.+|.. +..+ -+..+++- ..+.+
T Consensus 8 ~~a~~TPf~~dg~iD~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg-~~~t~ 86 (293)
T PRK04147 8 YAALLTPFDEDGQIDEQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVG-SVNTA 86 (293)
T ss_pred eeeeECcCCCCCCcCHHHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCC-CCCHH
Confidence 5667788765555566666788888888 8875443 2 23456776632 2222 34566664 34567
Q ss_pred HHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCCccHHH
Q 015722 171 VDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKD 250 (402)
Q Consensus 171 ~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 250 (402)
...++.+.+++.|++++.+. .|.+ .++ ..+-..+.
T Consensus 87 ~ai~~a~~a~~~Gad~v~v~--~P~y------------~~~-------------------------------~~~~l~~~ 121 (293)
T PRK04147 87 EAQELAKYATELGYDAISAV--TPFY------------YPF-------------------------------SFEEICDY 121 (293)
T ss_pred HHHHHHHHHHHcCCCEEEEe--CCcC------------CCC-------------------------------CHHHHHHH
Confidence 77788899999999999874 2321 000 00012344
Q ss_pred HHHHHHccCccEEEEec-------cCHHHHHHHHHh-CCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecC
Q 015722 251 VKWLQTITSLPILVKGV-------LTAEDASLAIQY-GAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGG 322 (402)
Q Consensus 251 i~~lr~~~~~Pv~vK~~-------~~~~da~~a~~a-Gad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GG 322 (402)
.+.+.+.+++|+++=.. .+++...++.+. .+-+|.-+. ..+..+.++.+..+ +..| .+|
T Consensus 122 f~~va~a~~lPv~iYn~P~~tg~~l~~~~l~~L~~~pnvvgiK~s~----------~d~~~~~~~~~~~~-~~~v-~~G- 188 (293)
T PRK04147 122 YREIIDSADNPMIVYNIPALTGVNLSLDQFNELFTLPKVIGVKQTA----------GDLYQLERIRKAFP-DKLI-YNG- 188 (293)
T ss_pred HHHHHHhCCCCEEEEeCchhhccCCCHHHHHHHhcCCCEEEEEeCC----------CCHHHHHHHHHhCC-CCEE-EEe-
Confidence 56666777889887643 456777666653 233343321 12344555555443 4444 444
Q ss_pred CCCHHHHHHHHHcCcCEEEEchH
Q 015722 323 VRRGTDVFKALALGASGVFVGRP 345 (402)
Q Consensus 323 I~~g~dv~kal~lGAd~V~iGr~ 345 (402)
.-+-++..+.+|++++..+..
T Consensus 189 --~d~~~~~~l~~G~~G~is~~~ 209 (293)
T PRK04147 189 --FDEMFASGLLAGADGAIGSTY 209 (293)
T ss_pred --ehHHHHHHHHcCCCEEEechh
Confidence 234567788899999987764
No 381
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=94.48 E-value=1.1 Score=47.30 Aligned_cols=57 Identities=18% Similarity=0.284 Sum_probs=37.1
Q ss_pred ccccccCC-CCCCccceeecCcccCCceeecccccccccCChhhHHHHHHHHHcCCeEEecCC
Q 015722 82 FRPRILRD-VSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSW 143 (402)
Q Consensus 82 l~pr~l~~-~~~~d~st~i~G~~l~~Pi~iAPm~~~~~~~~~ge~ala~aa~~~G~~~~vs~~ 143 (402)
+-|++.+. -..+.++|.|--+.=..|+++|-|.=.++ +-.+..+++++|--.-+...
T Consensus 10 yaPklvk~~~Gr~~v~TkfsrLtGr~PillaGMTPtTV-----dp~ivAAaAnAGhwaELAGG 67 (717)
T COG4981 10 YAPKLVKLPDGRVKVSTKFSRLTGRSPILLAGMTPTTV-----DPDIVAAAANAGHWAELAGG 67 (717)
T ss_pred hCcceEecCCCcEEEeechhhhcCCCCeeecCCCCCcC-----CHHHHHHHhcCCceeeecCC
Confidence 34776654 45667777664444468999999976653 34677788888765555433
No 382
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=94.48 E-value=0.32 Score=47.29 Aligned_cols=92 Identities=22% Similarity=0.354 Sum_probs=56.8
Q ss_pred HHHHHHhCCcEEEEecCcccCCCCCcc-hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHH----HHHcCcCEEEEchHHH
Q 015722 273 ASLAIQYGAAGIIVSNHGARQLDYVPA-TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFK----ALALGASGVFVGRPVP 347 (402)
Q Consensus 273 a~~a~~aGad~I~vsn~gg~~~d~~~~-~~~~l~~i~~~~~~~i~via~GGI~~g~dv~k----al~lGAd~V~iGr~~l 347 (402)
++.+.+.|+++|.+.++-|-...-... -.+.+..+++.+++++||++.=|=.+..++++ +-.+|||+|++..|.+
T Consensus 27 i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~~~~P~~ 106 (284)
T cd00950 27 IEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAGADAALVVTPYY 106 (284)
T ss_pred HHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHHcCCCEEEEccccc
Confidence 456778999999997654322111111 12345556666667889876555455666654 3447999999999987
Q ss_pred HhhhcCChHHHHHHHHHHHH
Q 015722 348 FSLAVDGEAGVRKVLQMLRD 367 (402)
Q Consensus 348 ~~~~~~G~~gv~~~i~~l~~ 367 (402)
+.. .++++.++++.+.+
T Consensus 107 ~~~---~~~~l~~~~~~ia~ 123 (284)
T cd00950 107 NKP---SQEGLYAHFKAIAE 123 (284)
T ss_pred CCC---CHHHHHHHHHHHHh
Confidence 642 34555555555444
No 383
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=94.47 E-value=0.34 Score=47.25 Aligned_cols=92 Identities=22% Similarity=0.325 Sum_probs=57.4
Q ss_pred HHHHHHhCCcEEEEecCcccCCCCCcc-hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHH----HHHcCcCEEEEchHHH
Q 015722 273 ASLAIQYGAAGIIVSNHGARQLDYVPA-TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFK----ALALGASGVFVGRPVP 347 (402)
Q Consensus 273 a~~a~~aGad~I~vsn~gg~~~d~~~~-~~~~l~~i~~~~~~~i~via~GGI~~g~dv~k----al~lGAd~V~iGr~~l 347 (402)
++.+.+.|+++|.+.++.|-...-... -.+.+..+++.+.+++||++.=|=.+-.|+++ |-.+|||+|++..|++
T Consensus 25 i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~pP~y 104 (285)
T TIGR00674 25 IDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAISLTKFAEDVGADGFLVVTPYY 104 (285)
T ss_pred HHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEcCCcC
Confidence 455678999999986654432111111 23455666666677899987656555666553 3347999999999987
Q ss_pred HhhhcCChHHHHHHHHHHHH
Q 015722 348 FSLAVDGEAGVRKVLQMLRD 367 (402)
Q Consensus 348 ~~~~~~G~~gv~~~i~~l~~ 367 (402)
+.. .++++.+++..+.+
T Consensus 105 ~~~---~~~~i~~~~~~i~~ 121 (285)
T TIGR00674 105 NKP---TQEGLYQHFKAIAE 121 (285)
T ss_pred CCC---CHHHHHHHHHHHHh
Confidence 643 34555555544433
No 384
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=94.45 E-value=0.25 Score=48.89 Aligned_cols=94 Identities=20% Similarity=0.218 Sum_probs=63.5
Q ss_pred HHHHHHHHccC--ccEEEEeccCH----HHHHHHHHh---CCcEEEEecCcccCCCCCcchHHHHHHHHHHh---c-CCC
Q 015722 249 KDVKWLQTITS--LPILVKGVLTA----EDASLAIQY---GAAGIIVSNHGARQLDYVPATVMALEEVVQAA---K-GRV 315 (402)
Q Consensus 249 ~~i~~lr~~~~--~Pv~vK~~~~~----~da~~a~~a---Gad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~---~-~~i 315 (402)
+.++.+++..+ .|+.+ .+.+. ++|..+.++ ++|.|.+.|.+++ .| -..+.+.++++++ + +++
T Consensus 172 ~A~~~~~~~~p~~~~i~v-evdt~~~~v~eal~~~~~~~~~~d~I~lDn~~~~---~G-~~~~~~~~~~~~l~~~g~~~~ 246 (302)
T cd01571 172 EAWKAFDETYPEDVPRIA-LIDTFNDEKEEALKAAKALGDKLDGVRLDTPSSR---RG-VFRYLIREVRWALDIRGYKHV 246 (302)
T ss_pred HHHHHHHHHCCCcCCeEE-EEeecCcchHHHHHHHHHhCCCCcEEEECCCCCC---CC-CHHHHHHHHHHHHHhCCCCCe
Confidence 44777777665 35544 34333 356666666 4899999886431 11 1334455555544 2 468
Q ss_pred eEEEecCCCCHHHHHHHHHcCcCEEEEchHHHH
Q 015722 316 PVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 348 (402)
Q Consensus 316 ~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~ 348 (402)
.|+++||| +.+.+.+...+|.|.+.+|+....
T Consensus 247 ~ieaSGgI-~~~~i~~~a~~gvD~isvGs~~~~ 278 (302)
T cd01571 247 KIFVSGGL-DEEDIKELEDVGVDAFGVGTAISK 278 (302)
T ss_pred EEEEeCCC-CHHHHHHHHHcCCCEEECCcccCC
Confidence 89999999 699999999999999999996653
No 385
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=94.34 E-value=0.52 Score=42.42 Aligned_cols=82 Identities=23% Similarity=0.189 Sum_probs=53.1
Q ss_pred HHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcC-CCeEEEecCCCC--------HHHHHHHHHcCcCEEEE
Q 015722 272 DASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKG-RVPVFLDGGVRR--------GTDVFKALALGASGVFV 342 (402)
Q Consensus 272 da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~-~i~via~GGI~~--------g~dv~kal~lGAd~V~i 342 (402)
.++.+.+.|+++|.+.+ +.+..+++.+++ ++||++.=|-.+ -+.+.++..+|||++++
T Consensus 18 ~~~~~~~~gv~gi~~~g-------------~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v 84 (201)
T cd00945 18 LCDEAIEYGFAAVCVNP-------------GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDV 84 (201)
T ss_pred HHHHHHHhCCcEEEECH-------------HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEE
Confidence 35677889999998843 566667777766 799876433332 34556777799999999
Q ss_pred chHHHHhhhcCChHHHHHHHHHHHH
Q 015722 343 GRPVPFSLAVDGEAGVRKVLQMLRD 367 (402)
Q Consensus 343 Gr~~l~~~~~~G~~gv~~~i~~l~~ 367 (402)
..|+.+.... .++++.+.++.+.+
T Consensus 85 ~~~~~~~~~~-~~~~~~~~~~~i~~ 108 (201)
T cd00945 85 VINIGSLKEG-DWEEVLEEIAAVVE 108 (201)
T ss_pred eccHHHHhCC-CHHHHHHHHHHHHH
Confidence 9887654310 13444444444433
No 386
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=94.31 E-value=0.37 Score=47.18 Aligned_cols=90 Identities=18% Similarity=0.252 Sum_probs=57.1
Q ss_pred HHHHHH-hCCcEEEEecCcccCCCCCcc-hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHH----HHHcCcCEEEEchHH
Q 015722 273 ASLAIQ-YGAAGIIVSNHGARQLDYVPA-TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFK----ALALGASGVFVGRPV 346 (402)
Q Consensus 273 a~~a~~-aGad~I~vsn~gg~~~d~~~~-~~~~l~~i~~~~~~~i~via~GGI~~g~dv~k----al~lGAd~V~iGr~~ 346 (402)
++.+.+ .|+++|.+.++.|-...-... -.+.+..+++.+.+++|||+.=|=.+-.|+++ +-.+|||+|++-.|+
T Consensus 30 i~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v~~P~ 109 (293)
T PRK04147 30 VRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATELGYDAISAVTPF 109 (293)
T ss_pred HHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 455677 899999997664421111111 23455666667777899998666556666653 445899999999998
Q ss_pred HHhhhcCChHHHHHHHHHH
Q 015722 347 PFSLAVDGEAGVRKVLQML 365 (402)
Q Consensus 347 l~~~~~~G~~gv~~~i~~l 365 (402)
++.. .++++.++++.+
T Consensus 110 y~~~---~~~~l~~~f~~v 125 (293)
T PRK04147 110 YYPF---SFEEICDYYREI 125 (293)
T ss_pred CCCC---CHHHHHHHHHHH
Confidence 7653 234444444443
No 387
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=94.30 E-value=4.4 Score=39.17 Aligned_cols=94 Identities=24% Similarity=0.388 Sum_probs=61.7
Q ss_pred HHHHHHHHHccCccEEEEec--cCHHH----HHHHHHhCCcEEEEecCcccCCCCC-cc--hHHHHHHHHHHhcCCCeEE
Q 015722 248 WKDVKWLQTITSLPILVKGV--LTAED----ASLAIQYGAAGIIVSNHGARQLDYV-PA--TVMALEEVVQAAKGRVPVF 318 (402)
Q Consensus 248 ~~~i~~lr~~~~~Pv~vK~~--~~~~d----a~~a~~aGad~I~vsn~gg~~~d~~-~~--~~~~l~~i~~~~~~~i~vi 318 (402)
++.++++-+ .+.||++|-. .|.++ |+-.+..|-..|++.-.|=|..+.+ +- .+..++-+++.. .+|||
T Consensus 142 F~LLke~G~-~~kPvLLKRg~~aTieEwL~AAEYI~s~GN~~vILCERGIRtfe~~TRntLDi~aV~~~kq~T--HLPVi 218 (286)
T COG2876 142 FALLKEVGR-QNKPVLLKRGLSATIEEWLNAAEYILSHGNGNVILCERGIRTFEKATRNTLDISAVPILKQET--HLPVI 218 (286)
T ss_pred hHHHHHhcc-cCCCeEEecCccccHHHHHHHHHHHHhCCCCcEEEEecccccccccccceechHHHHHHHhhc--CCCEE
Confidence 344555433 4789999954 46665 6667788999999987776655543 22 345677666654 68999
Q ss_pred Eec----CCCCHHH--HHHHHHcCcCEEEEch
Q 015722 319 LDG----GVRRGTD--VFKALALGASGVFVGR 344 (402)
Q Consensus 319 a~G----GI~~g~d--v~kal~lGAd~V~iGr 344 (402)
+|= |=|+.-. +..|+++|||++|+-=
T Consensus 219 vDpSH~~Grr~lv~pla~AA~AaGAdglmiEV 250 (286)
T COG2876 219 VDPSHATGRRDLVEPLAKAAIAAGADGLMIEV 250 (286)
T ss_pred ECCCCcccchhhHHHHHHHHHhccCCeeEEEe
Confidence 974 3232222 3367779999999863
No 388
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=94.25 E-value=5.9 Score=39.51 Aligned_cols=81 Identities=19% Similarity=0.238 Sum_probs=59.6
Q ss_pred cCHHHHHHHH-HhCCcEEEEec---CcccCC-CC---CcchHHHHHHHHHHhcCCCeEEEecCCCC--------------
Q 015722 268 LTAEDASLAI-QYGAAGIIVSN---HGARQL-DY---VPATVMALEEVVQAAKGRVPVFLDGGVRR-------------- 325 (402)
Q Consensus 268 ~~~~da~~a~-~aGad~I~vsn---~gg~~~-d~---~~~~~~~l~~i~~~~~~~i~via~GGI~~-------------- 325 (402)
.++++|+.-. +.|+|.+-++. ||-+.. ++ ..-.++.|.+|.+.+. ++|+..=||=..
T Consensus 164 T~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~d~L~~I~~~~~-~vPLVLHGgSg~~~~~~~~~~~~g~~ 242 (321)
T PRK07084 164 TQPEEVEDFVKKTGVDSLAISIGTSHGAYKFKPGQCPPPLRFDILEEIEKRIP-GFPIVLHGSSSVPQEYVKTINEYGGK 242 (321)
T ss_pred CCHHHHHHHHHHhCCCEEeeccccccccccCCCCCCCCccCHHHHHHHHHhcC-CCCEEEeCCCCCcHHHHHHHHHhcCc
Confidence 5688886655 57999999874 565432 11 1235788999998873 589988887533
Q ss_pred --------HHHHHHHHHcCcCEEEEchHHHHh
Q 015722 326 --------GTDVFKALALGASGVFVGRPVPFS 349 (402)
Q Consensus 326 --------g~dv~kal~lGAd~V~iGr~~l~~ 349 (402)
-+|+.||+.+|..=|-++|-+..+
T Consensus 243 ~~~~~Gi~~e~~~kai~~GI~KINi~Tdl~~a 274 (321)
T PRK07084 243 LKDAIGIPEEQLRKAAKSAVCKINIDSDGRLA 274 (321)
T ss_pred cccCCCCCHHHHHHHHHcCCceeccchHHHHH
Confidence 388999999999999999976544
No 389
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=94.15 E-value=0.058 Score=49.02 Aligned_cols=138 Identities=16% Similarity=0.164 Sum_probs=78.6
Q ss_pred CChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCC-
Q 015722 167 KHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRS- 245 (402)
Q Consensus 167 ~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~- 245 (402)
.|-..+.+++++++++| +-+.||+|.= .|+. .. ...-+|+.....++
T Consensus 28 g~I~~l~~~v~~~~~~g-K~vfVHiDli----------~Gl~------~D---------------~~~i~~L~~~~~~dG 75 (175)
T PF04309_consen 28 GDIGNLKDIVKRLKAAG-KKVFVHIDLI----------EGLS------RD---------------EAGIEYLKEYGKPDG 75 (175)
T ss_dssp EECCCHHHHHHHHHHTT--EEEEECCGE----------ETB-------SS---------------HHHHHHHHHTT--SE
T ss_pred CcHHHHHHHHHHHHHcC-CEEEEEehhc----------CCCC------CC---------------HHHHHHHHHcCCCcE
Confidence 56677889999999998 5566899842 2221 00 11222333322221
Q ss_pred -c--cHHHHHHHHHccCccEEEEec----cCHHH-HHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeE
Q 015722 246 -L--NWKDVKWLQTITSLPILVKGV----LTAED-ASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPV 317 (402)
Q Consensus 246 -~--~~~~i~~lr~~~~~Pv~vK~~----~~~~d-a~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~v 317 (402)
. ....++..++. ++.-+-+.- .+.+. .+.+.+...|+|-+= . + .....+.++++.+ ++||
T Consensus 76 IISTk~~~i~~Ak~~-gl~tIqRiFliDS~al~~~~~~i~~~~PD~vEil--P-----g--~~p~vi~~i~~~~--~~Pi 143 (175)
T PF04309_consen 76 IISTKSNLIKRAKKL-GLLTIQRIFLIDSSALETGIKQIEQSKPDAVEIL--P-----G--VMPKVIKKIREET--NIPI 143 (175)
T ss_dssp EEESSHHHHHHHHHT-T-EEEEEEE-SSHHHHHHHHHHHHHHT-SEEEEE--S-----C--CHHHHHCCCCCCC--SS-E
T ss_pred EEeCCHHHHHHHHHc-CCEEEEEeeeecHHHHHHHHHHHhhcCCCEEEEc--h-----H--HHHHHHHHHHHhc--CCCE
Confidence 1 12456666664 444433431 23343 455678899999882 1 1 1123444444433 6999
Q ss_pred EEecCCCCHHHHHHHHHcCcCEEEEchHHHH
Q 015722 318 FLDGGVRRGTDVFKALALGASGVFVGRPVPF 348 (402)
Q Consensus 318 ia~GGI~~g~dv~kal~lGAd~V~iGr~~l~ 348 (402)
|+.|=|++.+|+.++|..||.+|....+-+|
T Consensus 144 IAGGLI~~~e~v~~al~aGa~aVSTS~~~LW 174 (175)
T PF04309_consen 144 IAGGLIRTKEDVEEALKAGADAVSTSNKELW 174 (175)
T ss_dssp EEESS--SHHHHHHHCCTTCEEEEE--HHHC
T ss_pred EeecccCCHHHHHHHHHcCCEEEEcCChHhc
Confidence 9999999999999999999999999887665
No 390
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=94.14 E-value=0.42 Score=46.72 Aligned_cols=153 Identities=20% Similarity=0.230 Sum_probs=85.0
Q ss_pred CCceeecccccccccCChhhHHHHHHHHHcCCeEE-e--cCC-cc-------CCH-------HHHhhcCCCceEEEEeec
Q 015722 105 SMPIMIAPTAFQKMAHPEGECATARAASAAGTIMT-L--SSW-AT-------SSV-------EEVSSTGPGIRFFQLYVT 166 (402)
Q Consensus 105 ~~Pi~iAPm~~~~~~~~~ge~ala~aa~~~G~~~~-v--s~~-~~-------~s~-------eei~~~~~~~~~~QLy~~ 166 (402)
..|++++=++. .++.=...|+.+.++|+.++ + ++- .. .+. +.+.+...-|.++.+-
T Consensus 89 ~~p~ivsi~g~----~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~-- 162 (296)
T cd04740 89 GTPVIASIAGS----TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLT-- 162 (296)
T ss_pred CCcEEEEEecC----CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEeC--
Confidence 46776654332 23333577788888887554 3 210 00 111 2223333456777764
Q ss_pred CChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCCc
Q 015722 167 KHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSL 246 (402)
Q Consensus 167 ~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 246 (402)
.+.+...++++.++++|+++|.+. ++-. +. .-+.++. .|. + . ... + .++.......
T Consensus 163 ~~~~~~~~~a~~~~~~G~d~i~~~-nt~~-g~-~~~~~~~--~~~-~--~-------------~~~--g-g~sg~~~~~~ 218 (296)
T cd04740 163 PNVTDIVEIARAAEEAGADGLTLI-NTLK-GM-AIDIETR--KPI-L--G-------------NVT--G-GLSGPAIKPI 218 (296)
T ss_pred CCchhHHHHHHHHHHcCCCEEEEE-CCCc-cc-ccccccC--cee-e--c-------------CCc--c-eecCcccchH
Confidence 344557788889999999998763 2111 10 0000000 000 0 0 000 0 0000011224
Q ss_pred cHHHHHHHHHccCccEEEE-eccCHHHHHHHHHhCCcEEEEe
Q 015722 247 NWKDVKWLQTITSLPILVK-GVLTAEDASLAIQYGAAGIIVS 287 (402)
Q Consensus 247 ~~~~i~~lr~~~~~Pv~vK-~~~~~~da~~a~~aGad~I~vs 287 (402)
.++.++.+++.+++||+.= ++.+++++..++++|||+|.+.
T Consensus 219 ~~~~i~~i~~~~~ipii~~GGI~~~~da~~~l~~GAd~V~ig 260 (296)
T cd04740 219 ALRMVYQVYKAVEIPIIGVGGIASGEDALEFLMAGASAVQVG 260 (296)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 6788999999889998875 4679999999999999999984
No 391
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=94.14 E-value=0.29 Score=48.05 Aligned_cols=106 Identities=25% Similarity=0.261 Sum_probs=63.4
Q ss_pred CCceEEEEeecCChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhH
Q 015722 156 PGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLA 235 (402)
Q Consensus 156 ~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (402)
+-|.++.+- .+.+...+++++++++|+++|.++-... +. ..+++.. .|. .. . ......+
T Consensus 157 ~~pv~vKi~--~~~~~~~~~a~~l~~~G~d~i~v~nt~~--~~-~~~~~~~--~~~---~~--------~-~~gg~sg-- 215 (300)
T TIGR01037 157 DVPVFAKLS--PNVTDITEIAKAAEEAGADGLTLINTLR--GM-KIDIKTG--KPI---LA--------N-KTGGLSG-- 215 (300)
T ss_pred CCCEEEECC--CChhhHHHHHHHHHHcCCCEEEEEccCC--cc-ccccccC--cee---eC--------C-CCccccc--
Confidence 346677763 3455667888999999999998753221 11 0011100 000 00 0 0000000
Q ss_pred HHhhhhcCCCccHHHHHHHHHccCccEEE-EeccCHHHHHHHHHhCCcEEEEe
Q 015722 236 SYVANQIDRSLNWKDVKWLQTITSLPILV-KGVLTAEDASLAIQYGAAGIIVS 287 (402)
Q Consensus 236 ~~~~~~~d~~~~~~~i~~lr~~~~~Pv~v-K~~~~~~da~~a~~aGad~I~vs 287 (402)
+ ......++.+.++++.+++||+. .++.+++++..++++|||+|.+.
T Consensus 216 ----~-~~~~~~l~~v~~i~~~~~ipvi~~GGI~s~~da~~~l~~GAd~V~ig 263 (300)
T TIGR01037 216 ----P-AIKPIALRMVYDVYKMVDIPIIGVGGITSFEDALEFLMAGASAVQVG 263 (300)
T ss_pred ----h-hhhHHHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHcCCCceeec
Confidence 0 01113457788899988999985 56789999999999999999883
No 392
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=94.11 E-value=0.54 Score=46.81 Aligned_cols=95 Identities=14% Similarity=0.156 Sum_probs=62.3
Q ss_pred CCceEEEEeecCCh----hHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCc
Q 015722 156 PGIRFFQLYVTKHR----NVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDD 231 (402)
Q Consensus 156 ~~~~~~QLy~~~d~----~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~ 231 (402)
+.|..+.+-.+.+. +...++++.++++|+++|.|+.-+... .++. +. .
T Consensus 123 ~~PVsvKiR~g~~~~~~~~~~~~~~~~l~~~G~~~itvHgRt~~~--------qg~s-g~----~--------------- 174 (318)
T TIGR00742 123 NIPVTVKHRIGIDPLDSYEFLCDFVEIVSGKGCQNFIVHARKAWL--------SGLS-PK----E--------------- 174 (318)
T ss_pred CCCeEEEEecCCCCcchHHHHHHHHHHHHHcCCCEEEEeCCchhh--------cCCC-cc----c---------------
Confidence 35677777543322 455677888899999998887544210 1110 00 0
Q ss_pred hhhHHHhhhhcCCCccHHHHHHHHHcc-CccEEEE-eccCHHHHHHHHHhCCcEEEEe
Q 015722 232 SGLASYVANQIDRSLNWKDVKWLQTIT-SLPILVK-GVLTAEDASLAIQYGAAGIIVS 287 (402)
Q Consensus 232 ~~~~~~~~~~~d~~~~~~~i~~lr~~~-~~Pv~vK-~~~~~~da~~a~~aGad~I~vs 287 (402)
.. .-+...|+.+.++++.+ ++||+.= ++.+.+|++...+ |+|+|.++
T Consensus 175 ---~~-----~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~-g~dgVMig 223 (318)
T TIGR00742 175 ---NR-----EIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHLS-HVDGVMVG 223 (318)
T ss_pred ---cc-----cCCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHHh-CCCEEEEC
Confidence 00 01225788899999887 7998764 5789999998886 99999983
No 393
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=94.10 E-value=0.48 Score=46.64 Aligned_cols=87 Identities=17% Similarity=0.148 Sum_probs=60.2
Q ss_pred HHHHHccCccEEEEecc--CHH----HHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCC
Q 015722 252 KWLQTITSLPILVKGVL--TAE----DASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRR 325 (402)
Q Consensus 252 ~~lr~~~~~Pv~vK~~~--~~~----da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~ 325 (402)
+.+++..+.|+++.... +++ .++.+.+.|+|+|.+.- +....+....++.+.++++.+ ++||++- ++.+
T Consensus 108 ~~i~~~~~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~--~~p~~~~~~~~~~i~~l~~~~--~~pvivK-~v~s 182 (299)
T cd02809 108 EEVAAAAPGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTV--DTPVLGRRLTWDDLAWLRSQW--KGPLILK-GILT 182 (299)
T ss_pred HHHHHhcCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEec--CCCCCCCCCCHHHHHHHHHhc--CCCEEEe-ecCC
Confidence 34444445788877642 333 45677889999999842 211111113567888888876 5898885 5899
Q ss_pred HHHHHHHHHcCcCEEEEc
Q 015722 326 GTDVFKALALGASGVFVG 343 (402)
Q Consensus 326 g~dv~kal~lGAd~V~iG 343 (402)
.+++.++..+|||+|.+.
T Consensus 183 ~~~a~~a~~~G~d~I~v~ 200 (299)
T cd02809 183 PEDALRAVDAGADGIVVS 200 (299)
T ss_pred HHHHHHHHHCCCCEEEEc
Confidence 999999999999999884
No 394
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=94.08 E-value=0.23 Score=46.83 Aligned_cols=62 Identities=18% Similarity=0.326 Sum_probs=45.4
Q ss_pred hCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHH
Q 015722 279 YGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVP 347 (402)
Q Consensus 279 aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l 347 (402)
.|...+.+--.||. +.|...+.++++.+ ..++|.-||||+++++.+...+|||.+.+|+.+.
T Consensus 163 ~g~~~~YlEagsga---~~Pv~~e~v~~v~~----~~~LivGGGIrs~E~A~~~a~agAD~IVtG~iie 224 (240)
T COG1646 163 LGMPVVYLEAGSGA---GDPVPVEMVSRVLS----DTPLIVGGGIRSPEQAREMAEAGADTIVTGTIIE 224 (240)
T ss_pred hCCeEEEEEecCCC---CCCcCHHHHHHhhc----cceEEEcCCcCCHHHHHHHHHcCCCEEEECceee
Confidence 46666666433322 34556666655443 4599999999999999999999999999999654
No 395
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=94.08 E-value=0.42 Score=46.68 Aligned_cols=92 Identities=22% Similarity=0.339 Sum_probs=56.7
Q ss_pred HHHHHHhCCcEEEEecCcccCCCCCcc-hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHH----HHHcCcCEEEEchHHH
Q 015722 273 ASLAIQYGAAGIIVSNHGARQLDYVPA-TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFK----ALALGASGVFVGRPVP 347 (402)
Q Consensus 273 a~~a~~aGad~I~vsn~gg~~~d~~~~-~~~~l~~i~~~~~~~i~via~GGI~~g~dv~k----al~lGAd~V~iGr~~l 347 (402)
++.+.+.|+++|.+.++-|-...-... -.+.+..+++.+.+++||++.=|=.+-.|+++ +-.+|||+|++-.|.+
T Consensus 28 i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~pP~~ 107 (292)
T PRK03170 28 VDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEKAGADGALVVTPYY 107 (292)
T ss_pred HHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHHHcCCCEEEECCCcC
Confidence 456778899999986554322111122 12445666666777899876544444555553 3347999999999987
Q ss_pred HhhhcCChHHHHHHHHHHHH
Q 015722 348 FSLAVDGEAGVRKVLQMLRD 367 (402)
Q Consensus 348 ~~~~~~G~~gv~~~i~~l~~ 367 (402)
+.. .++++.++++.+.+
T Consensus 108 ~~~---~~~~i~~~~~~ia~ 124 (292)
T PRK03170 108 NKP---TQEGLYQHFKAIAE 124 (292)
T ss_pred CCC---CHHHHHHHHHHHHh
Confidence 643 35665555555543
No 396
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=94.05 E-value=6.7 Score=38.66 Aligned_cols=181 Identities=20% Similarity=0.217 Sum_probs=110.2
Q ss_pred CceeecccccccccCChhhHHHHHHHHHcCCeEEe--c---CCccCCHHHHhh-------cCC--CceEEEEeecCChhH
Q 015722 106 MPIMIAPTAFQKMAHPEGECATARAASAAGTIMTL--S---SWATSSVEEVSS-------TGP--GIRFFQLYVTKHRNV 171 (402)
Q Consensus 106 ~Pi~iAPm~~~~~~~~~ge~ala~aa~~~G~~~~v--s---~~~~~s~eei~~-------~~~--~~~~~QLy~~~d~~~ 171 (402)
.|.++.|+.-.+-.+.++-..+.+-..+.|+-..+ + +..+.|.+|-.+ ... -|...+.- ..+.+.
T Consensus 9 i~a~vTPF~~dg~vD~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g-~~~t~e 87 (299)
T COG0329 9 IPALVTPFDEDGSVDEEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVG-SNSTAE 87 (299)
T ss_pred eeccccCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecC-CCcHHH
Confidence 67778888654445666566778888888975444 2 224557776322 222 24556654 345667
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCCccHHHH
Q 015722 172 DAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDV 251 (402)
Q Consensus 172 ~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i 251 (402)
..++.+.+++.|++++.+. +|++ ... +..-..+..
T Consensus 88 ai~lak~a~~~Gad~il~v--~PyY-----------------~k~--------------------------~~~gl~~hf 122 (299)
T COG0329 88 AIELAKHAEKLGADGILVV--PPYY-----------------NKP--------------------------SQEGLYAHF 122 (299)
T ss_pred HHHHHHHHHhcCCCEEEEe--CCCC-----------------cCC--------------------------ChHHHHHHH
Confidence 7789999999999999872 2332 000 001123556
Q ss_pred HHHHHccCccEEEEec-------cCHHHHHHHHHh-CCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCC
Q 015722 252 KWLQTITSLPILVKGV-------LTAEDASLAIQY-GAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGV 323 (402)
Q Consensus 252 ~~lr~~~~~Pv~vK~~-------~~~~da~~a~~a-Gad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI 323 (402)
+++.+.+++|+++=.+ .+++...++.+. .+-+|.-+ ...++.+.++....+.+-=++.+|+
T Consensus 123 ~~ia~a~~lPvilYN~P~~tg~~l~~e~i~~la~~~nivgiKd~----------~gd~~~~~~~~~~~~~~~f~v~~G~- 191 (299)
T COG0329 123 KAIAEAVDLPVILYNIPSRTGVDLSPETIARLAEHPNIVGVKDS----------SGDLDRLEEIIAALGDRDFIVLSGD- 191 (299)
T ss_pred HHHHHhcCCCEEEEeCccccCCCCCHHHHHHHhcCCCEEEEEeC----------CcCHHHHHHHHHhcCccCeeEEeCc-
Confidence 7778888899888654 567777777762 22222221 1255667777666533212445453
Q ss_pred CCHHHHHHHHHcCcCEEEEchH
Q 015722 324 RRGTDVFKALALGASGVFVGRP 345 (402)
Q Consensus 324 ~~g~dv~kal~lGAd~V~iGr~ 345 (402)
-+.++-++.+|++++.-+..
T Consensus 192 --d~~~~~~~~~G~~G~is~~~ 211 (299)
T COG0329 192 --DELALPALLLGADGVISVTA 211 (299)
T ss_pred --hHHHHHHHhCCCCeEEeccc
Confidence 45667888899999999884
No 397
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=94.00 E-value=0.49 Score=46.45 Aligned_cols=154 Identities=24% Similarity=0.220 Sum_probs=85.1
Q ss_pred cCCceeecccccccccCChhhHHHHHHHHHcC-CeEE-e--cC-C-c--c----CCH---HH----HhhcCCCceEEEEe
Q 015722 104 ISMPIMIAPTAFQKMAHPEGECATARAASAAG-TIMT-L--SS-W-A--T----SSV---EE----VSSTGPGIRFFQLY 164 (402)
Q Consensus 104 l~~Pi~iAPm~~~~~~~~~ge~ala~aa~~~G-~~~~-v--s~-~-~--~----~s~---ee----i~~~~~~~~~~QLy 164 (402)
+..|++++=++. +++.=...|+.++++| ..++ + |. . . . ... .+ +.+...-|.++.+-
T Consensus 90 ~~~p~i~si~g~----~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~ 165 (301)
T PRK07259 90 FDTPIIANVAGS----TEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLT 165 (301)
T ss_pred cCCcEEEEeccC----CHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 356776654432 2343357777788887 5443 2 10 0 0 0 011 22 33333456777764
Q ss_pred ecCChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCC
Q 015722 165 VTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDR 244 (402)
Q Consensus 165 ~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 244 (402)
.+.+...+++++++++|+++|.++=..+ +.+ .+.+... |. + . ....+ ++.....
T Consensus 166 --~~~~~~~~~a~~l~~~G~d~i~~~nt~~--g~~-~~~~~~~--~~-~--~------------~~~gg----~sg~~~~ 219 (301)
T PRK07259 166 --PNVTDIVEIAKAAEEAGADGLSLINTLK--GMA-IDIKTRK--PI-L--A------------NVTGG----LSGPAIK 219 (301)
T ss_pred --CCchhHHHHHHHHHHcCCCEEEEEcccc--ccc-cccccCc--ee-e--c------------CCcCc----cCCcCcc
Confidence 2445667888999999999987631111 110 0000000 00 0 0 00000 0100112
Q ss_pred CccHHHHHHHHHccCccEEEE-eccCHHHHHHHHHhCCcEEEEe
Q 015722 245 SLNWKDVKWLQTITSLPILVK-GVLTAEDASLAIQYGAAGIIVS 287 (402)
Q Consensus 245 ~~~~~~i~~lr~~~~~Pv~vK-~~~~~~da~~a~~aGad~I~vs 287 (402)
...++.+..+++.+++||+.= ++.+++++..++.+|||.|.+.
T Consensus 220 p~~l~~v~~i~~~~~ipvi~~GGI~~~~da~~~l~aGAd~V~ig 263 (301)
T PRK07259 220 PIALRMVYQVYQAVDIPIIGMGGISSAEDAIEFIMAGASAVQVG 263 (301)
T ss_pred cccHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCceeEc
Confidence 246788999999889998864 5689999999999999999883
No 398
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=93.93 E-value=6.7 Score=38.23 Aligned_cols=180 Identities=19% Similarity=0.142 Sum_probs=101.8
Q ss_pred CceeecccccccccCChhhHHHHHHHHHc-CCeEEe--c---CCccCCHHHHh-------hcCC--CceEEEEeecCChh
Q 015722 106 MPIMIAPTAFQKMAHPEGECATARAASAA-GTIMTL--S---SWATSSVEEVS-------STGP--GIRFFQLYVTKHRN 170 (402)
Q Consensus 106 ~Pi~iAPm~~~~~~~~~ge~ala~aa~~~-G~~~~v--s---~~~~~s~eei~-------~~~~--~~~~~QLy~~~d~~ 170 (402)
.|..+.|+.-.+-.+.++-..+.+-..+. |+..++ + ++.+.+.+|-. +... -+.++++- ..+.+
T Consensus 5 ~~a~~TPf~~dg~iD~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~-~~~~~ 83 (288)
T cd00954 5 IAALLTPFDENGEINEDVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVG-SLNLK 83 (288)
T ss_pred eeceECCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccC-CCCHH
Confidence 45566776544444555556777777777 865543 2 23455666532 2222 24455553 34566
Q ss_pred HHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCCccHHH
Q 015722 171 VDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKD 250 (402)
Q Consensus 171 ~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 250 (402)
...++.+.++++|++++.+. .|.. .++ +.+-..+.
T Consensus 84 ~ai~~a~~a~~~Gad~v~~~--~P~y------------~~~-------------------------------~~~~i~~~ 118 (288)
T cd00954 84 ESQELAKHAEELGYDAISAI--TPFY------------YKF-------------------------------SFEEIKDY 118 (288)
T ss_pred HHHHHHHHHHHcCCCEEEEe--CCCC------------CCC-------------------------------CHHHHHHH
Confidence 77788889999999999873 2321 000 00012344
Q ss_pred HHHHHHcc-CccEEEEec-------cCHHHHHHHHHhC-CcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEec
Q 015722 251 VKWLQTIT-SLPILVKGV-------LTAEDASLAIQYG-AAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDG 321 (402)
Q Consensus 251 i~~lr~~~-~~Pv~vK~~-------~~~~da~~a~~aG-ad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~G 321 (402)
.+.+.+.+ ++||++=.. .+++..+++.+.. +-+|.-+. ..+..+.++.+..+++..|+. |
T Consensus 119 ~~~v~~a~~~lpi~iYn~P~~tg~~l~~~~~~~L~~~pnivgiK~s~----------~d~~~~~~~~~~~~~~~~v~~-G 187 (288)
T cd00954 119 YREIIAAAASLPMIIYHIPALTGVNLTLEQFLELFEIPNVIGVKFTA----------TDLYDLERIRAASPEDKLVLN-G 187 (288)
T ss_pred HHHHHHhcCCCCEEEEeCccccCCCCCHHHHHHHhcCCCEEEEEeCC----------CCHHHHHHHHHhCCCCcEEEE-e
Confidence 56666777 788887532 4667777766532 22333221 123445556555544555553 3
Q ss_pred CCCCHHHHHHHHHcCcCEEEEchH
Q 015722 322 GVRRGTDVFKALALGASGVFVGRP 345 (402)
Q Consensus 322 GI~~g~dv~kal~lGAd~V~iGr~ 345 (402)
. ...+..++.+||++++.|..
T Consensus 188 ~---d~~~~~~~~~G~~G~i~~~~ 208 (288)
T cd00954 188 F---DEMLLSALALGADGAIGSTY 208 (288)
T ss_pred c---hHHHHHHHHcCCCEEEeChh
Confidence 2 34566788899999988864
No 399
>PLN02979 glycolate oxidase
Probab=93.91 E-value=0.46 Score=48.02 Aligned_cols=92 Identities=17% Similarity=0.234 Sum_probs=62.8
Q ss_pred cHHHHHHHHHccCccEEEEec------cCHHHHHHHHHhCCcEEEEec----Cccc-----------------CCC----
Q 015722 247 NWKDVKWLQTITSLPILVKGV------LTAEDASLAIQYGAAGIIVSN----HGAR-----------------QLD---- 295 (402)
Q Consensus 247 ~~~~i~~lr~~~~~Pv~vK~~------~~~~da~~a~~aGad~I~vsn----~gg~-----------------~~d---- 295 (402)
+.|+|. +..+.|.+.+.- .+.+..++|.++|+.+|++.- .|-| ...
T Consensus 111 slEeIa---~a~~~~~wfQLY~~~Dr~~~~~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p~~~~~~~~~~~~~ 187 (366)
T PLN02979 111 SVEEVA---STGPGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDL 187 (366)
T ss_pred CHHHHH---hccCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCCchhhhccCCCCCcccchhhhhhccc
Confidence 445554 334557777754 234567889999999998841 1111 000
Q ss_pred -------------------CCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEch
Q 015722 296 -------------------YVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGR 344 (402)
Q Consensus 296 -------------------~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr 344 (402)
....+|+.|..+++.- ++|||+ .||.+.+|+.++..+|+|+|.|+.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~ltW~dl~wlr~~~--~~Pviv-KgV~~~~dA~~a~~~Gvd~I~Vsn 252 (366)
T PLN02979 188 GKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTIT--KLPILV-KGVLTGEDARIAIQAGAAGIIVSN 252 (366)
T ss_pred cCCCcccchhHHHHHhhcCCCCCCHHHHHHHHhcc--CCCEEe-ecCCCHHHHHHHHhcCCCEEEECC
Confidence 0123577788887755 799988 558899999999999999999875
No 400
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=93.86 E-value=1 Score=40.59 Aligned_cols=109 Identities=22% Similarity=0.201 Sum_probs=72.0
Q ss_pred hHHHHHHHHHcCCeEEecCCccCCHHHHhhcC-CCceEEEEeecCChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHH
Q 015722 124 ECATARAASAAGTIMTLSSWATSSVEEVSSTG-PGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREAD 202 (402)
Q Consensus 124 e~ala~aa~~~G~~~~vs~~~~~s~eei~~~~-~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d 202 (402)
|.++-=.+........+|+-++. +..+. .+...+|=.+.-|.....+.++.+++.+.+++.+
T Consensus 65 e~~i~fi~~~~~pdGIISTk~~~----i~~Akk~~~~aIqR~FilDS~Al~~~~~~i~~~~pD~iEv------------- 127 (181)
T COG1954 65 EVAIEFIKEVIKPDGIISTKSNV----IKKAKKLGILAIQRLFILDSIALEKGIKQIEKSEPDFIEV------------- 127 (181)
T ss_pred hHHHHHHHHhccCCeeEEccHHH----HHHHHHcCCceeeeeeeecHHHHHHHHHHHHHcCCCEEEE-------------
Confidence 44444445555555555554321 11111 1334455444567777788888888888887765
Q ss_pred HhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCCccHHHHHHHHHccCccEEEEe-ccCHHHHHHHHHhCC
Q 015722 203 IKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKG-VLTAEDASLAIQYGA 281 (402)
Q Consensus 203 ~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~Pv~vK~-~~~~~da~~a~~aGa 281 (402)
+|. ..-+.++++.++++.|++..| +.+.|++..|.++||
T Consensus 128 ------LPG----------------------------------v~Pkvi~~i~~~t~~piIAGGLi~t~Eev~~Al~aGA 167 (181)
T COG1954 128 ------LPG----------------------------------VMPKVIKEITEKTHIPIIAGGLIETEEEVREALKAGA 167 (181)
T ss_pred ------cCc----------------------------------ccHHHHHHHHHhcCCCEEeccccccHHHHHHHHHhCc
Confidence 221 123678999999999999887 478999999999999
Q ss_pred cEEEEecC
Q 015722 282 AGIIVSNH 289 (402)
Q Consensus 282 d~I~vsn~ 289 (402)
-++..||.
T Consensus 168 ~avSTs~~ 175 (181)
T COG1954 168 VAVSTSNT 175 (181)
T ss_pred EEEeecch
Confidence 99988764
No 401
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=93.81 E-value=0.37 Score=47.43 Aligned_cols=111 Identities=18% Similarity=0.164 Sum_probs=65.2
Q ss_pred CCceEEEEeecCChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhH
Q 015722 156 PGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLA 235 (402)
Q Consensus 156 ~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (402)
..|.++.|-+ +.....++++.++++|+++|.++ ++- .+....|+.+.-..+ .+..+ +.. +
T Consensus 168 ~~Pv~vKl~~--~~~~~~~~a~~~~~~Gadgi~~~-Nt~-~~~~~id~~~~~~~~-~~~~~------------~~~---g 227 (299)
T cd02940 168 KIPVIAKLTP--NITDIREIARAAKEGGADGVSAI-NTV-NSLMGVDLDGTPPAP-GVEGK------------TTY---G 227 (299)
T ss_pred CCCeEEECCC--CchhHHHHHHHHHHcCCCEEEEe-ccc-ccccccccccCCccc-cccCC------------CCc---C
Confidence 3578888753 45567788999999999998763 211 110000000000000 00000 000 0
Q ss_pred HHhhhhcCCCccHHHHHHHHHcc--CccEEEE-eccCHHHHHHHHHhCCcEEEEe
Q 015722 236 SYVANQIDRSLNWKDVKWLQTIT--SLPILVK-GVLTAEDASLAIQYGAAGIIVS 287 (402)
Q Consensus 236 ~~~~~~~d~~~~~~~i~~lr~~~--~~Pv~vK-~~~~~~da~~a~~aGad~I~vs 287 (402)
.+ +........|+.|.++++.+ ++||+.= ++.+.+|+...+.+|||+|.+.
T Consensus 228 g~-sG~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~i~ 281 (299)
T cd02940 228 GY-SGPAVKPIALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQVC 281 (299)
T ss_pred cc-cCCCcchHHHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChheEc
Confidence 01 00012234689999999999 8898764 5789999999999999999984
No 402
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=93.77 E-value=0.49 Score=47.24 Aligned_cols=67 Identities=15% Similarity=0.094 Sum_probs=50.5
Q ss_pred HHHHHHHHhCC--cEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEc
Q 015722 271 EDASLAIQYGA--AGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVG 343 (402)
Q Consensus 271 ~da~~a~~aGa--d~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iG 343 (402)
+.+..+.++|+ |.|.+...-| ......+.++++++..+ ++|||+ |.|.|.+++..+..+|||++.+|
T Consensus 100 ~~~~~Lv~ag~~~d~i~iD~a~g----h~~~~~e~I~~ir~~~p-~~~vi~-g~V~t~e~a~~l~~aGad~i~vg 168 (326)
T PRK05458 100 DFVDQLAAEGLTPEYITIDIAHG----HSDSVINMIQHIKKHLP-ETFVIA-GNVGTPEAVRELENAGADATKVG 168 (326)
T ss_pred HHHHHHHhcCCCCCEEEEECCCC----chHHHHHHHHHHHhhCC-CCeEEE-EecCCHHHHHHHHHcCcCEEEEC
Confidence 45777889965 9999964222 23456677888887662 466665 66889999999999999999877
No 403
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=93.75 E-value=0.22 Score=49.66 Aligned_cols=104 Identities=20% Similarity=0.175 Sum_probs=65.7
Q ss_pred CceEEEEeecCChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHH
Q 015722 157 GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLAS 236 (402)
Q Consensus 157 ~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (402)
.|.++.|-+..+.+...++++.++++|+++|.++-..... . ...-|. ..+ .....++ .
T Consensus 203 ~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~--~------~~~~~~---~~~---------~~gG~sG--~ 260 (327)
T cd04738 203 VPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISR--P------GLLRSP---LAN---------ETGGLSG--A 260 (327)
T ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccc--c------cccccc---ccC---------CCCccCC--h
Confidence 5788888654455567888999999999999876432210 0 000000 000 0000000 0
Q ss_pred HhhhhcCCCccHHHHHHHHHcc--CccEEE-EeccCHHHHHHHHHhCCcEEEEe
Q 015722 237 YVANQIDRSLNWKDVKWLQTIT--SLPILV-KGVLTAEDASLAIQYGAAGIIVS 287 (402)
Q Consensus 237 ~~~~~~d~~~~~~~i~~lr~~~--~~Pv~v-K~~~~~~da~~a~~aGad~I~vs 287 (402)
. .....++.+..+++.+ ++||+. .++.+.+|+...+.+|||.|.+.
T Consensus 261 ~-----~~~~~l~~v~~l~~~~~~~ipIi~~GGI~t~~da~e~l~aGAd~V~vg 309 (327)
T cd04738 261 P-----LKERSTEVLRELYKLTGGKIPIIGVGGISSGEDAYEKIRAGASLVQLY 309 (327)
T ss_pred h-----hhHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHcCCCHHhcc
Confidence 0 1113578899999988 689874 56789999999999999999884
No 404
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=93.75 E-value=0.5 Score=48.71 Aligned_cols=111 Identities=20% Similarity=0.158 Sum_probs=64.9
Q ss_pred CCceEEEEeecCChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhH
Q 015722 156 PGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLA 235 (402)
Q Consensus 156 ~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (402)
..|.++.|-+ +...+.++++.++++|+++|.++ ++-. +.-.-|+.+.-..|. +.... .....+|
T Consensus 168 ~~Pv~vKl~p--~~~~~~~~a~~~~~~Gadgi~~~-Nt~~-~~~~id~~~~~~~p~---------~~~~~-~~gg~SG-- 231 (420)
T PRK08318 168 RLPVIVKLTP--NITDIREPARAAKRGGADAVSLI-NTIN-SITGVDLDRMIPMPI---------VNGKS-SHGGYCG-- 231 (420)
T ss_pred CCcEEEEcCC--CcccHHHHHHHHHHCCCCEEEEe-cccC-ccccccccccCCCce---------ecCCC-Ccccccc--
Confidence 3678888863 44447788899999999998853 2211 100011110000000 00000 0000011
Q ss_pred HHhhhhcCCCccHHHHHHHHHcc---CccEEE-EeccCHHHHHHHHHhCCcEEEEe
Q 015722 236 SYVANQIDRSLNWKDVKWLQTIT---SLPILV-KGVLTAEDASLAIQYGAAGIIVS 287 (402)
Q Consensus 236 ~~~~~~~d~~~~~~~i~~lr~~~---~~Pv~v-K~~~~~~da~~a~~aGad~I~vs 287 (402)
.. .....|+.|..+++.+ ++||+- .|+.+.+||...+.+|||+|.+.
T Consensus 232 ~a-----~~p~~l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqi~ 282 (420)
T PRK08318 232 PA-----VKPIALNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQVC 282 (420)
T ss_pred hh-----hhHHHHHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhCCChheee
Confidence 00 1124788999999987 789874 56899999999999999999985
No 405
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=93.73 E-value=0.79 Score=45.93 Aligned_cols=124 Identities=19% Similarity=0.190 Sum_probs=83.0
Q ss_pred ChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCCcc
Q 015722 168 HRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLN 247 (402)
Q Consensus 168 d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 247 (402)
+.+.+.+.++++.+.||+++-|.++..... .+ ....+
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~-------------------------------------~~------~~~~d 175 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSG-------------------------------------GE------DLRED 175 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcc-------------------------------------hH------HHHHH
Confidence 466677778888889999998876532100 00 01235
Q ss_pred HHHHHHHHHcc--CccEEEEec--cCHHHHHH----HHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEE
Q 015722 248 WKDVKWLQTIT--SLPILVKGV--LTAEDASL----AIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFL 319 (402)
Q Consensus 248 ~~~i~~lr~~~--~~Pv~vK~~--~~~~da~~----a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via 319 (402)
.+.++.+|+.+ +.++.+..- .+.+++.. +.+.|++.|-= ...+..++.+.++++.+ .+||++
T Consensus 176 ~~~v~~ir~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iEq--------P~~~~~~~~~~~l~~~~--~ipi~~ 245 (357)
T cd03316 176 LARVRAVREAVGPDVDLMVDANGRWDLAEAIRLARALEEYDLFWFEE--------PVPPDDLEGLARLRQAT--SVPIAA 245 (357)
T ss_pred HHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHhCccCCCeEcC--------CCCccCHHHHHHHHHhC--CCCEEe
Confidence 67788999887 467877643 46666543 33445554431 01122467778888776 799999
Q ss_pred ecCCCCHHHHHHHHHcC-cCEEEEch
Q 015722 320 DGGVRRGTDVFKALALG-ASGVFVGR 344 (402)
Q Consensus 320 ~GGI~~g~dv~kal~lG-Ad~V~iGr 344 (402)
+..+.+..|+.+++..| +|.|.+--
T Consensus 246 dE~~~~~~~~~~~i~~~~~d~v~~k~ 271 (357)
T cd03316 246 GENLYTRWEFRDLLEAGAVDIIQPDV 271 (357)
T ss_pred ccccccHHHHHHHHHhCCCCEEecCc
Confidence 99999999999999976 78887743
No 406
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=93.67 E-value=0.81 Score=42.69 Aligned_cols=42 Identities=21% Similarity=0.619 Sum_probs=35.9
Q ss_pred ccHHHHHHHHHccCccEEEEe-ccCHHHHHHHHHh-CCcEEEEe
Q 015722 246 LNWKDVKWLQTITSLPILVKG-VLTAEDASLAIQY-GAAGIIVS 287 (402)
Q Consensus 246 ~~~~~i~~lr~~~~~Pv~vK~-~~~~~da~~a~~a-Gad~I~vs 287 (402)
..|+.++.+++.+++||+.=| +.+++++..+.+. |+|+|.+.
T Consensus 170 ~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~ig 213 (231)
T cd02801 170 ADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGVMIG 213 (231)
T ss_pred CCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEEEEc
Confidence 367889999999999998855 5789999999987 89999883
No 407
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=93.57 E-value=0.35 Score=47.41 Aligned_cols=83 Identities=20% Similarity=0.254 Sum_probs=59.4
Q ss_pred CccEEEEeccCHHHHHHHHHhCCcEEEEecCccc----CCCCCcchHH----HHHHHHHHhcCCCeEEEec--CCCCHHH
Q 015722 259 SLPILVKGVLTAEDASLAIQYGAAGIIVSNHGAR----QLDYVPATVM----ALEEVVQAAKGRVPVFLDG--GVRRGTD 328 (402)
Q Consensus 259 ~~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~----~~d~~~~~~~----~l~~i~~~~~~~i~via~G--GI~~g~d 328 (402)
+.|+++-++-+.-.|+.+.++|.++|.+|+++-. ..|.+.-+++ .+.+|.+.+ ++||++|. |..++.+
T Consensus 12 ~~~l~~p~~~Da~SAri~e~aGf~Ai~~sg~~~a~~lG~pD~g~lt~~e~~~~~~~I~~~~--~iPviaD~d~GyG~~~~ 89 (285)
T TIGR02317 12 EDILQIPGAINAMAALLAERAGFEAIYLSGAAVAASLGLPDLGITTLDEVAEDARRITRVT--DLPLLVDADTGFGEAFN 89 (285)
T ss_pred CCcEEeCCCCCHHHHHHHHHcCCCEEEEcHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcc--CCCEEEECCCCCCCHHH
Confidence 4688888888999999999999999999875321 1344443433 344444444 79999986 7777777
Q ss_pred H----HHHHHcCcCEEEEc
Q 015722 329 V----FKALALGASGVFVG 343 (402)
Q Consensus 329 v----~kal~lGAd~V~iG 343 (402)
+ .+...+||.++.|-
T Consensus 90 v~~tv~~~~~aG~agi~IE 108 (285)
T TIGR02317 90 VARTVREMEDAGAAAVHIE 108 (285)
T ss_pred HHHHHHHHHHcCCeEEEEe
Confidence 5 34455899999884
No 408
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=93.52 E-value=1 Score=47.10 Aligned_cols=83 Identities=19% Similarity=0.177 Sum_probs=52.7
Q ss_pred HHHHHHHHccC--cc-EEEEeccCHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCC
Q 015722 249 KDVKWLQTITS--LP-ILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRR 325 (402)
Q Consensus 249 ~~i~~lr~~~~--~P-v~vK~~~~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~ 325 (402)
+....+....+ .. |.--|+.+++|++.+.+ |+|++-|.. .+-..+.....+.++.. ..+.| .||++
T Consensus 198 ~~~~~l~~~ip~~~~~vseSGI~t~~d~~~~~~-~~davLiG~----~lm~~~d~~~~~~~L~~---~~vKI---CGit~ 266 (454)
T PRK09427 198 NRTRELAPLIPADVIVISESGIYTHAQVRELSP-FANGFLIGS----SLMAEDDLELAVRKLIL---GENKV---CGLTR 266 (454)
T ss_pred HHHHHHHhhCCCCcEEEEeCCCCCHHHHHHHHh-cCCEEEECH----HHcCCCCHHHHHHHHhc---ccccc---CCCCC
Confidence 44455555543 22 22236789999999865 799998832 22222333344444422 22332 67999
Q ss_pred HHHHHHHHHcCcCEEEE
Q 015722 326 GTDVFKALALGASGVFV 342 (402)
Q Consensus 326 g~dv~kal~lGAd~V~i 342 (402)
.+|+..+..+|||++++
T Consensus 267 ~eda~~a~~~GaD~lGf 283 (454)
T PRK09427 267 PQDAKAAYDAGAVYGGL 283 (454)
T ss_pred HHHHHHHHhCCCCEEee
Confidence 99999999999999988
No 409
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=93.51 E-value=2.8 Score=38.81 Aligned_cols=126 Identities=16% Similarity=0.021 Sum_probs=76.6
Q ss_pred cCChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCC
Q 015722 166 TKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRS 245 (402)
Q Consensus 166 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 245 (402)
..|.....+.++++.++|++.+.+.+- .+ . +. .+..
T Consensus 12 ~~~~~~~~~~~~~~~~~G~~~i~l~~~------------d~------~-----------------------~~---~~~~ 47 (220)
T PRK05581 12 SADFARLGEEVKAVEAAGADWIHVDVM------------DG------H-----------------------FV---PNLT 47 (220)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEeCc------------cC------C-----------------------cC---CCcC
Confidence 346677788999999999999877320 00 0 00 0111
Q ss_pred ccHHHHHHHHHccCccEEE--EeccCHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCC
Q 015722 246 LNWKDVKWLQTITSLPILV--KGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGV 323 (402)
Q Consensus 246 ~~~~~i~~lr~~~~~Pv~v--K~~~~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI 323 (402)
+..+.++++++.++.|+.+ +.-...+....+.++|+|+|.+ |++.. ......+..+++ .++.+..+-+-
T Consensus 48 ~~~~~~~~i~~~~~~~~~v~l~v~d~~~~i~~~~~~g~d~v~v--h~~~~----~~~~~~~~~~~~---~~~~~g~~~~~ 118 (220)
T PRK05581 48 IGPPVVEAIRKVTKLPLDVHLMVENPDRYVPDFAKAGADIITF--HVEAS----EHIHRLLQLIKS---AGIKAGLVLNP 118 (220)
T ss_pred cCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEE--eeccc----hhHHHHHHHHHH---cCCEEEEEECC
Confidence 3457788888776544323 2222344567778999999999 65420 111223333332 24555554466
Q ss_pred CCHHHHHHHHHcCcCEEEEch
Q 015722 324 RRGTDVFKALALGASGVFVGR 344 (402)
Q Consensus 324 ~~g~dv~kal~lGAd~V~iGr 344 (402)
.+..+..+.+..++|.+.+++
T Consensus 119 ~t~~e~~~~~~~~~d~i~~~~ 139 (220)
T PRK05581 119 ATPLEPLEDVLDLLDLVLLMS 139 (220)
T ss_pred CCCHHHHHHHHhhCCEEEEEE
Confidence 677888888887899888875
No 410
>PLN02535 glycolate oxidase
Probab=93.45 E-value=0.61 Score=47.30 Aligned_cols=90 Identities=19% Similarity=0.311 Sum_probs=62.4
Q ss_pred HHHHHHccCccEEEEec------cCHHHHHHHHHhCCcEEEEec----CcccC--------------CC-----------
Q 015722 251 VKWLQTITSLPILVKGV------LTAEDASLAIQYGAAGIIVSN----HGARQ--------------LD----------- 295 (402)
Q Consensus 251 i~~lr~~~~~Pv~vK~~------~~~~da~~a~~aGad~I~vsn----~gg~~--------------~d----------- 295 (402)
++++.+..+.|.+.+.- .+.+..++|.++|+.+|++.- .|-|. ..
T Consensus 115 lEeva~~~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~ 194 (364)
T PLN02535 115 VEEVASSCNAVRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADVPRLGRREADIKNKMISPQLKNFEGLLSTEVVSDK 194 (364)
T ss_pred HHHHHhcCCCCeEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeecCCCCCCchhhhhcCCCCcchhhHhhhhccCCCccc
Confidence 33444444567887764 234567899999999999852 11110 00
Q ss_pred ------------CCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEc
Q 015722 296 ------------YVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVG 343 (402)
Q Consensus 296 ------------~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iG 343 (402)
....+|+.+..+++.. ++|||+ .||.+++|+.++..+|+|+|.+.
T Consensus 195 ~~~~~~~~~~~~~~~~tW~~i~~lr~~~--~~Pviv-KgV~~~~dA~~a~~~GvD~I~vs 251 (364)
T PLN02535 195 GSGLEAFASETFDASLSWKDIEWLRSIT--NLPILI-KGVLTREDAIKAVEVGVAGIIVS 251 (364)
T ss_pred cccHHHHHHhccCCCCCHHHHHHHHhcc--CCCEEE-ecCCCHHHHHHHHhcCCCEEEEe
Confidence 1123577788887765 789888 66999999999999999999885
No 411
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=93.41 E-value=0.38 Score=47.31 Aligned_cols=82 Identities=23% Similarity=0.334 Sum_probs=59.1
Q ss_pred CccEEEEeccCHHHHHHHHHhCCcEEEEecCccc-----CCCCCcchHH----HHHHHHHHhcCCCeEEEec--CCCCHH
Q 015722 259 SLPILVKGVLTAEDASLAIQYGAAGIIVSNHGAR-----QLDYVPATVM----ALEEVVQAAKGRVPVFLDG--GVRRGT 327 (402)
Q Consensus 259 ~~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~-----~~d~~~~~~~----~l~~i~~~~~~~i~via~G--GI~~g~ 327 (402)
+.|+++-++-+.-.|+.+.++|+++|.+|+++=. ..|.+.-+++ .+.+|.+.+ ++||++|+ |..++.
T Consensus 16 ~~~l~~p~~~Da~SAri~e~~Gf~ai~~Sg~~~a~~~lG~PD~g~l~~~e~~~~~~~I~~~~--~iPviaD~d~GyG~~~ 93 (292)
T PRK11320 16 EKPLQIVGTINAYHALLAERAGFKAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDAC--DLPLLVDIDTGFGGAF 93 (292)
T ss_pred CCcEEecCCCCHHHHHHHHHcCCCEEEeCHHHHHhHhcCCCCCCCCCHHHHHHHHHHHHhcc--CCCEEEECCCCCCCHH
Confidence 4688888888999999999999999999875311 1354544443 334444444 79999987 766888
Q ss_pred HH----HHHHHcCcCEEEE
Q 015722 328 DV----FKALALGASGVFV 342 (402)
Q Consensus 328 dv----~kal~lGAd~V~i 342 (402)
.+ .+...+||.++.|
T Consensus 94 ~v~r~V~~~~~aGaagi~I 112 (292)
T PRK11320 94 NIARTVKSMIKAGAAAVHI 112 (292)
T ss_pred HHHHHHHHHHHcCCeEEEE
Confidence 86 3444589999988
No 412
>PLN02858 fructose-bisphosphate aldolase
Probab=93.33 E-value=18 Score=43.17 Aligned_cols=111 Identities=15% Similarity=0.135 Sum_probs=74.1
Q ss_pred cCHHHHHHHH-HhCCcEEEEec---CcccCCCCCcchHHHHHHHHHHhc-CCCeEEEec--CCCCHHHHHHHHHcCcCEE
Q 015722 268 LTAEDASLAI-QYGAAGIIVSN---HGARQLDYVPATVMALEEVVQAAK-GRVPVFLDG--GVRRGTDVFKALALGASGV 340 (402)
Q Consensus 268 ~~~~da~~a~-~aGad~I~vsn---~gg~~~d~~~~~~~~l~~i~~~~~-~~i~via~G--GI~~g~dv~kal~lGAd~V 340 (402)
.++++|+.-. +-|+|.+-++- ||-+......-.++.|.+|++.+. .++|+..=| |+. -+++.|++.+|..=|
T Consensus 1250 T~p~~a~~Fv~~TgvD~LAvaiGt~HG~Y~~~~p~l~~~~l~~i~~~~~~~~vpLVlHGgSG~~-~~~~~~ai~~Gi~Ki 1328 (1378)
T PLN02858 1250 TDVDQAKEFIDETGIDALAVCIGNVHGKYPASGPNLRLDLLKELRALSSKKGVLLVLHGASGLP-ESLIKECIENGVRKF 1328 (1378)
T ss_pred CCHHHHHHHHHhcCCcEEeeecccccccCCCCCCccCHHHHHHHHHHhcCCCCcEEEeCCCCCC-HHHHHHHHHcCCeEE
Confidence 3567776554 67999999873 664421111235788999999883 258888777 555 577889999999999
Q ss_pred EEchHHHHhhh----cCC----hHHHHHHHHHHHHHHHHHHHHhCCC
Q 015722 341 FVGRPVPFSLA----VDG----EAGVRKVLQMLRDEFELTMALSGCR 379 (402)
Q Consensus 341 ~iGr~~l~~~~----~~G----~~gv~~~i~~l~~el~~~m~~~G~~ 379 (402)
-|+|-+..+.. ..+ ..-.....+.+++-+++.|..+|..
T Consensus 1329 Ni~T~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gs~ 1375 (1378)
T PLN02858 1329 NVNTEVRTAYMEALSSPKKTDLIDVMSAAKEAMKAVVAEKLRLFGSA 1375 (1378)
T ss_pred EeCHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99997654421 111 1223444566777777888887754
No 413
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=93.30 E-value=0.53 Score=45.02 Aligned_cols=98 Identities=17% Similarity=0.227 Sum_probs=55.7
Q ss_pred HHHHHHHHccCccEEEEecc---CH----HHHHHHHHhCCcEEEEecC--c---c-cCCCCCcchHH---HHHHHHHHhc
Q 015722 249 KDVKWLQTITSLPILVKGVL---TA----EDASLAIQYGAAGIIVSNH--G---A-RQLDYVPATVM---ALEEVVQAAK 312 (402)
Q Consensus 249 ~~i~~lr~~~~~Pv~vK~~~---~~----~da~~a~~aGad~I~vsn~--g---g-~~~d~~~~~~~---~l~~i~~~~~ 312 (402)
+.++.+...++.|+++-+-. +. +.++++.++|+++|.+-.. + | .....-.+.-+ .|..++++..
T Consensus 59 ~~~~~I~~~~~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~ 138 (243)
T cd00377 59 AAVRRIARAVDLPVIADADTGYGNALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARD 138 (243)
T ss_pred HHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHh
Confidence 44677777778998875432 33 3367788999999999321 0 0 00001122223 3444444444
Q ss_pred C--CCeEEEe--------cCCCCHHHHHH-HHHcCcCEEEEchHH
Q 015722 313 G--RVPVFLD--------GGVRRGTDVFK-ALALGASGVFVGRPV 346 (402)
Q Consensus 313 ~--~i~via~--------GGI~~g~dv~k-al~lGAd~V~iGr~~ 346 (402)
+ +++|++= .|+...-.-.+ +..+|||+|++-.|.
T Consensus 139 ~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~v~~~~ 183 (243)
T cd00377 139 DLPDFVIIARTDALLAGEEGLDEAIERAKAYAEAGADGIFVEGLK 183 (243)
T ss_pred ccCCeEEEEEcCchhccCCCHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 3 6888876 23333333333 344899999997653
No 414
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=93.27 E-value=0.88 Score=43.23 Aligned_cols=39 Identities=31% Similarity=0.371 Sum_probs=32.3
Q ss_pred cHHHHHHHHHccCccEEEE-eccCHHHHHHHHHhCCcEEEEe
Q 015722 247 NWKDVKWLQTITSLPILVK-GVLTAEDASLAIQYGAAGIIVS 287 (402)
Q Consensus 247 ~~~~i~~lr~~~~~Pv~vK-~~~~~~da~~a~~aGad~I~vs 287 (402)
+|+.|+.++ .++||+.= ++.+.++++.+++.|+|+|.+.
T Consensus 181 d~~~I~~i~--~~ipVIgnGgI~s~eda~~~l~~GaD~VmiG 220 (233)
T cd02911 181 DLKKIRDIS--TELFIIGNNSVTTIESAKEMFSYGADMVSVA 220 (233)
T ss_pred cHHHHHHhc--CCCEEEEECCcCCHHHHHHHHHcCCCEEEEc
Confidence 577777776 57898764 5689999999999999999984
No 415
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=93.26 E-value=2.3 Score=40.83 Aligned_cols=88 Identities=19% Similarity=0.207 Sum_probs=61.5
Q ss_pred cHHHHHHHHHcc--CccEEEEec--cCHHHH----HHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEE
Q 015722 247 NWKDVKWLQTIT--SLPILVKGV--LTAEDA----SLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVF 318 (402)
Q Consensus 247 ~~~~i~~lr~~~--~~Pv~vK~~--~~~~da----~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~vi 318 (402)
+.+.++.+|+.. +.++.+... .+.+++ +.+.+.|++.|.-- ..+..++.+.++++.+ .+||.
T Consensus 115 d~~~v~~vr~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEeP--------~~~~d~~~~~~l~~~~--~ipia 184 (265)
T cd03315 115 DVAVVAALREAVGDDAELRVDANRGWTPKQAIRALRALEDLGLDYVEQP--------LPADDLEGRAALARAT--DTPIM 184 (265)
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHHHHHHHHhcCCCEEECC--------CCcccHHHHHHHHhhC--CCCEE
Confidence 346678888876 356666532 355554 45567787777531 1123467778887766 79999
Q ss_pred EecCCCCHHHHHHHHHcC-cCEEEEch
Q 015722 319 LDGGVRRGTDVFKALALG-ASGVFVGR 344 (402)
Q Consensus 319 a~GGI~~g~dv~kal~lG-Ad~V~iGr 344 (402)
+++.+.+..|+.+++..+ +|.|++--
T Consensus 185 ~dE~~~~~~~~~~~i~~~~~d~v~~k~ 211 (265)
T cd03315 185 ADESAFTPHDAFRELALGAADAVNIKT 211 (265)
T ss_pred ECCCCCCHHHHHHHHHhCCCCEEEEec
Confidence 999999999999999876 78888853
No 416
>TIGR03586 PseI pseudaminic acid synthase.
Probab=93.25 E-value=9.9 Score=38.06 Aligned_cols=125 Identities=16% Similarity=0.198 Sum_probs=66.6
Q ss_pred cHHHHHHHHHccCccEEEEec-cCHHHHH----HHHHhCCcEEEEecCcccCCC--CCcchHHHHHHHHHHhcCCCeEEE
Q 015722 247 NWKDVKWLQTITSLPILVKGV-LTAEDAS----LAIQYGAAGIIVSNHGARQLD--YVPATVMALEEVVQAAKGRVPVFL 319 (402)
Q Consensus 247 ~~~~i~~lr~~~~~Pv~vK~~-~~~~da~----~a~~aGad~I~vsn~gg~~~d--~~~~~~~~l~~i~~~~~~~i~via 319 (402)
.+..++.+.+ ++.||++|.. .+.++.. .+.+.|..-|++- |.-+... .....+..++.+++.. .+||..
T Consensus 123 n~~LL~~va~-~gkPvilstG~~t~~Ei~~Av~~i~~~g~~~i~Ll-hC~s~YP~~~~~~nL~~i~~lk~~f--~~pVG~ 198 (327)
T TIGR03586 123 DLPLIRYVAK-TGKPIIMSTGIATLEEIQEAVEACREAGCKDLVLL-KCTSSYPAPLEDANLRTIPDLAERF--NVPVGL 198 (327)
T ss_pred CHHHHHHHHh-cCCcEEEECCCCCHHHHHHHHHHHHHCCCCcEEEE-ecCCCCCCCcccCCHHHHHHHHHHh--CCCEEe
Confidence 4567777766 5899999954 5666643 3446788544442 3211111 1122456677666666 589955
Q ss_pred ecCCCCH--HHHHHHHHcCcCEEEEchHHHHhhhcCChHH----HHHHHHHHHHHHHHHHHHhCCC
Q 015722 320 DGGVRRG--TDVFKALALGASGVFVGRPVPFSLAVDGEAG----VRKVLQMLRDEFELTMALSGCR 379 (402)
Q Consensus 320 ~GGI~~g--~dv~kal~lGAd~V~iGr~~l~~~~~~G~~g----v~~~i~~l~~el~~~m~~~G~~ 379 (402)
+. ++. .-.+.|+++||+ +|=+-+-.--...|.+. -.+-+..|.+.++..-..+|..
T Consensus 199 SD--Ht~G~~~~~aAva~GA~--iIEkH~tld~~l~G~D~~~Sl~p~e~~~lv~~ir~~~~~lg~~ 260 (327)
T TIGR03586 199 SD--HTLGILAPVAAVALGAC--VIEKHFTLDRSDGGVDSAFSLEPDEFKALVKEVRNAWLALGEV 260 (327)
T ss_pred eC--CCCchHHHHHHHHcCCC--EEEeCCChhhcCCCCChhccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 54 332 334467779998 44443221111122211 0112455666667777777754
No 417
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=93.24 E-value=3.2 Score=40.02 Aligned_cols=47 Identities=23% Similarity=0.266 Sum_probs=34.1
Q ss_pred HHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEec-CCCCHHHH
Q 015722 271 EDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDG-GVRRGTDV 329 (402)
Q Consensus 271 ~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~G-GI~~g~dv 329 (402)
++++...++|||.|.+-. ++. +...+|.+.+ ++|+|.-| |-.+-.++
T Consensus 162 ~ra~a~~~AGA~~i~lE~---------v~~-~~~~~i~~~v--~iP~igiGaG~~~dgqv 209 (254)
T cd06557 162 EDALALEEAGAFALVLEC---------VPA-ELAKEITEAL--SIPTIGIGAGPDCDGQV 209 (254)
T ss_pred HHHHHHHHCCCCEEEEcC---------CCH-HHHHHHHHhC--CCCEEEeccCCCCCcee
Confidence 567888999999999832 443 6888888888 79999877 44333333
No 418
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=93.19 E-value=1.8 Score=42.86 Aligned_cols=42 Identities=17% Similarity=0.303 Sum_probs=36.3
Q ss_pred cHHHHHHHHHccCccEEEEe-ccCHHHHHHHHHhCCcEEEEec
Q 015722 247 NWKDVKWLQTITSLPILVKG-VLTAEDASLAIQYGAAGIIVSN 288 (402)
Q Consensus 247 ~~~~i~~lr~~~~~Pv~vK~-~~~~~da~~a~~aGad~I~vsn 288 (402)
+|..+.++++.+++||+.-| +.+.+++..+...|+|+|.+..
T Consensus 149 ~~~ll~~v~~~~~iPviaaGGI~~~~~~~~al~~GA~gV~iGt 191 (307)
T TIGR03151 149 TMALVPQVVDAVSIPVIAAGGIADGRGMAAAFALGAEAVQMGT 191 (307)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHcCCCEeecch
Confidence 57888899998899998865 6889999999999999999853
No 419
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=93.18 E-value=0.68 Score=46.98 Aligned_cols=92 Identities=17% Similarity=0.220 Sum_probs=62.5
Q ss_pred cHHHHHHHHHccCccEEEEec------cCHHHHHHHHHhCCcEEEEec----CcccC-----------------CC----
Q 015722 247 NWKDVKWLQTITSLPILVKGV------LTAEDASLAIQYGAAGIIVSN----HGARQ-----------------LD---- 295 (402)
Q Consensus 247 ~~~~i~~lr~~~~~Pv~vK~~------~~~~da~~a~~aGad~I~vsn----~gg~~-----------------~d---- 295 (402)
+.++|.+ ..+.|.+.+.- .+.+..++|.++|+.+|+++- .|.|. ..
T Consensus 112 slEeva~---~~~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTvD~p~~G~R~~d~r~~~~~p~~~~~~~~~~~~~ 188 (367)
T PLN02493 112 SVEEVAS---TGPGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDL 188 (367)
T ss_pred CHHHHHh---cCCCCcEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEcCCCCCCcchhhhcccCCCCcccchhhhhhccc
Confidence 4455543 34456776653 234567899999999999851 11110 00
Q ss_pred -------------------CCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEch
Q 015722 296 -------------------YVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGR 344 (402)
Q Consensus 296 -------------------~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr 344 (402)
....+|+.|..+++.- ++|||+ .||.+.+|+.+++.+|+|+|.+..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~tW~di~wlr~~~--~~Piiv-KgV~~~~dA~~a~~~Gvd~I~Vsn 253 (367)
T PLN02493 189 GKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTIT--KLPILV-KGVLTGEDARIAIQAGAAGIIVSN 253 (367)
T ss_pred cCCCcccchhHHHHHhhcCCCCCCHHHHHHHHhcc--CCCEEe-ecCCCHHHHHHHHHcCCCEEEECC
Confidence 0123567778777755 799988 558899999999999999999975
No 420
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=93.16 E-value=0.67 Score=44.30 Aligned_cols=85 Identities=16% Similarity=0.062 Sum_probs=57.4
Q ss_pred CccEEEEeccCHHHHHHHHHhCCcEEEEecCcccC----CCCCcchHHHHHHHHHHh-c--CCCeEEEecCCCCH---HH
Q 015722 259 SLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQ----LDYVPATVMALEEVVQAA-K--GRVPVFLDGGVRRG---TD 328 (402)
Q Consensus 259 ~~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~~----~d~~~~~~~~l~~i~~~~-~--~~i~via~GGI~~g---~d 328 (402)
+-|+++-++-+.-.|+.+.++|+|+|.++++++.. .|.+.-+++.+....+.+ + ..+||++|.---++ ++
T Consensus 11 ~~~i~~~~ayD~~sA~i~e~aG~dai~v~~s~~a~~~G~pD~~~vtl~em~~~~~~I~r~~~~~pviaD~~~G~g~~~~~ 90 (240)
T cd06556 11 KERFATLTAYDYSMAKQFADAGLNVMLVGDSQGMTVAGYDDTLPYPVNDVPYHVRAVRRGAPLALIVADLPFGAYGAPTA 90 (240)
T ss_pred CCeEEEecCCCHHHHHHHHHcCCCEEEEChHHHHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCCCEEEeCCCCCCcCHHH
Confidence 46888888888899999999999999998764321 244444554333332222 2 24799999754433 55
Q ss_pred ----HHHHHHcCcCEEEEc
Q 015722 329 ----VFKALALGASGVFVG 343 (402)
Q Consensus 329 ----v~kal~lGAd~V~iG 343 (402)
+.+.+.+||++|-|-
T Consensus 91 ~~~~~~~l~~aGa~gv~iE 109 (240)
T cd06556 91 AFELAKTFMRAGAAGVKIE 109 (240)
T ss_pred HHHHHHHHHHcCCcEEEEc
Confidence 445667999999993
No 421
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=93.11 E-value=0.62 Score=44.50 Aligned_cols=84 Identities=26% Similarity=0.331 Sum_probs=55.9
Q ss_pred CccEEEEeccCHHHHHHHHHhCCcEEEEecCccc----CCCCCcchHH----HHHHHHHHhcCCCeEEEec--CCCC-HH
Q 015722 259 SLPILVKGVLTAEDASLAIQYGAAGIIVSNHGAR----QLDYVPATVM----ALEEVVQAAKGRVPVFLDG--GVRR-GT 327 (402)
Q Consensus 259 ~~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~----~~d~~~~~~~----~l~~i~~~~~~~i~via~G--GI~~-g~ 327 (402)
+.|+++-++-+.-.|+.++++|+++|.+|+++-. ..|.+.-+++ .+.+|.+.+ ++||++|+ |..+ +.
T Consensus 8 ~~~l~~p~~~D~~SAr~~e~~Gf~ai~~sg~~~a~s~G~pD~~~lt~~e~~~~~~~I~~~~--~iPv~vD~d~GyG~~~~ 85 (238)
T PF13714_consen 8 GKPLVLPNVWDALSARLAERAGFDAIATSGAGVAASLGYPDGGLLTLTEMLAAVRRIARAV--SIPVIVDADTGYGNDPE 85 (238)
T ss_dssp SSSEEEEEESSHHHHHHHHHTT-SEEEEHHHHHHHHTTS-SSS-S-HHHHHHHHHHHHHHS--SSEEEEE-TTTSSSSHH
T ss_pred CCcEEeCCCcCHHHHHHHHHcCCCEEEechHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhh--cCcEEEEcccccCchhH
Confidence 3689999999999999999999999999864311 2455554443 345555555 89999997 6555 43
Q ss_pred H----HHHHHHcCcCEEEEch
Q 015722 328 D----VFKALALGASGVFVGR 344 (402)
Q Consensus 328 d----v~kal~lGAd~V~iGr 344 (402)
+ +.+...+||.++.|--
T Consensus 86 ~v~~tv~~~~~aG~agi~IED 106 (238)
T PF13714_consen 86 NVARTVRELERAGAAGINIED 106 (238)
T ss_dssp HHHHHHHHHHHCT-SEEEEES
T ss_pred HHHHHHHHHHHcCCcEEEeec
Confidence 3 3455568999999854
No 422
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=92.98 E-value=0.68 Score=43.06 Aligned_cols=73 Identities=23% Similarity=0.269 Sum_probs=46.7
Q ss_pred cCHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEe-----cCCCCH--------HHHHHHHH
Q 015722 268 LTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLD-----GGVRRG--------TDVFKALA 334 (402)
Q Consensus 268 ~~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~-----GGI~~g--------~dv~kal~ 334 (402)
.+.+++..|.+.|||.|-+-.+- ...+--|+...+..+++.. ++||.+- |++... +|+..+..
T Consensus 8 ~s~~~a~~A~~~GAdRiELc~~l--~~GGlTPS~g~i~~~~~~~--~ipv~vMIRpr~gdF~Ys~~E~~~M~~dI~~~~~ 83 (201)
T PF03932_consen 8 ESLEDALAAEAGGADRIELCSNL--EVGGLTPSLGLIRQAREAV--DIPVHVMIRPRGGDFVYSDEEIEIMKEDIRMLRE 83 (201)
T ss_dssp SSHHHHHHHHHTT-SEEEEEBTG--GGT-B---HHHHHHHHHHT--TSEEEEE--SSSS-S---HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCEEEECCCc--cCCCcCcCHHHHHHHHhhc--CCceEEEECCCCCCccCCHHHHHHHHHHHHHHHH
Confidence 68999999999999999986431 1112246678888888866 7888774 223221 56777888
Q ss_pred cCcCEEEEch
Q 015722 335 LGASGVFVGR 344 (402)
Q Consensus 335 lGAd~V~iGr 344 (402)
+|||++.+|-
T Consensus 84 ~GadG~VfG~ 93 (201)
T PF03932_consen 84 LGADGFVFGA 93 (201)
T ss_dssp TT-SEEEE--
T ss_pred cCCCeeEEEe
Confidence 9999999994
No 423
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=92.92 E-value=10 Score=37.35 Aligned_cols=67 Identities=13% Similarity=0.124 Sum_probs=46.1
Q ss_pred HHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeE---EEecCCCCHHHHHHHHHcCcCEEEEchHHHHh
Q 015722 273 ASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPV---FLDGGVRRGTDVFKALALGASGVFVGRPVPFS 349 (402)
Q Consensus 273 a~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~v---ia~GGI~~g~dv~kal~lGAd~V~iGr~~l~~ 349 (402)
++...++|||.|.+ +| +.+.+.+..+.+.+. .|+ +..||-.-...+...-.+|.+.|..+..++++
T Consensus 171 a~aY~eAGAD~ifi--~~-------~~~~~ei~~~~~~~~--~P~~~nv~~~~~~p~~s~~eL~~lG~~~v~~~~~~~~a 239 (294)
T TIGR02319 171 SREYVAAGADCIFL--EA-------MLDVEEMKRVRDEID--APLLANMVEGGKTPWLTTKELESIGYNLAIYPLSGWMA 239 (294)
T ss_pred HHHHHHhCCCEEEe--cC-------CCCHHHHHHHHHhcC--CCeeEEEEecCCCCCCCHHHHHHcCCcEEEEcHHHHHH
Confidence 45567999999998 32 456778888888774 444 34444322234556667899999999887765
Q ss_pred h
Q 015722 350 L 350 (402)
Q Consensus 350 ~ 350 (402)
.
T Consensus 240 a 240 (294)
T TIGR02319 240 A 240 (294)
T ss_pred H
Confidence 3
No 424
>KOG0134 consensus NADH:flavin oxidoreductase/12-oxophytodienoate reductase [Energy production and conversion; General function prediction only]
Probab=92.73 E-value=1.4 Score=44.93 Aligned_cols=102 Identities=20% Similarity=0.212 Sum_probs=61.6
Q ss_pred CccHHHHHHHHHccC-ccEEEEec---------cCHHH----HHHHHHhCCcEEEEecCcccCC---------CCCcch-
Q 015722 245 SLNWKDVKWLQTITS-LPILVKGV---------LTAED----ASLAIQYGAAGIIVSNHGARQL---------DYVPAT- 300 (402)
Q Consensus 245 ~~~~~~i~~lr~~~~-~Pv~vK~~---------~~~~d----a~~a~~aGad~I~vsn~gg~~~---------d~~~~~- 300 (402)
.+..+.++.+++..+ --+.+-++ .+.++ +...++-|.|.+-+++ |.-+ ...+..
T Consensus 225 Rf~lEv~daVr~~Ip~s~~~l~~~~~~~fq~~~~t~d~~~~~~~~y~~~g~df~~l~~--g~~~~~~h~i~~R~~~~~~~ 302 (400)
T KOG0134|consen 225 RFPLEVVDAVRKEIPASRVFLRGSPTNEFQDIGITIDDAIKMCGLYEDGGLDFVELTG--GTFLAYVHFIEPRQSTIARE 302 (400)
T ss_pred hhhHHHHHHHHHhhccccceEEecCchhhhhccccccchHHHHHHHHhcccchhhccC--chhhhhhhhccccccccccc
Confidence 367788999999863 11222222 12233 4556788999666642 3210 111111
Q ss_pred ---HHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCc-CEEEEchHHHHh
Q 015722 301 ---VMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGA-SGVFVGRPVPFS 349 (402)
Q Consensus 301 ---~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGA-d~V~iGr~~l~~ 349 (402)
.+.-..++...+ ..-|-+.||.++++.+.+++..|. ++|+.||+|+..
T Consensus 303 ~~~~~f~e~~r~~~k-gt~v~a~g~~~t~~~~~eav~~~~T~~ig~GR~f~an 354 (400)
T KOG0134|consen 303 AFFVEFAETIRPVFK-GTVVYAGGGGRTREAMVEAVKSGRTDLIGYGRPFLAN 354 (400)
T ss_pred cchhhhhhHHHHHhc-CcEEEecCCccCHHHHHHHHhcCCceeEEecchhccC
Confidence 122333443442 344667779999999999999995 599999999863
No 425
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=92.67 E-value=0.83 Score=44.87 Aligned_cols=111 Identities=16% Similarity=0.065 Sum_probs=63.7
Q ss_pred CCceEEEEeecCChhHHHHHHHHHHHc--CCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchh
Q 015722 156 PGIRFFQLYVTKHRNVDAQLVKRAERA--GFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSG 233 (402)
Q Consensus 156 ~~~~~~QLy~~~d~~~~~~~l~ra~~~--G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 233 (402)
..|.++.|-+..|.+.+.++++.+.++ |++++.++ ++-..+.. .+ +.+... .+ .... .....+
T Consensus 157 ~iPv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~-Nt~~~~~~-------id-~~~~~~-~~---~~~~-~~gG~S- 221 (294)
T cd04741 157 SIPVGVKTPPYTDPAQFDTLAEALNAFACPISFITAT-NTLGNGLV-------LD-PERETV-VL---KPKT-GFGGLA- 221 (294)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEE-ccCCcccc-------cc-CCCCCc-cc---CCCC-CCCCcC-
Confidence 467899997766766778888888888 88888753 22110000 00 000000 00 0000 000001
Q ss_pred hHHHhhhhcCCCccHHHHHHHHHccC--ccEEEE-eccCHHHHHHHHHhCCcEEEEe
Q 015722 234 LASYVANQIDRSLNWKDVKWLQTITS--LPILVK-GVLTAEDASLAIQYGAAGIIVS 287 (402)
Q Consensus 234 ~~~~~~~~~d~~~~~~~i~~lr~~~~--~Pv~vK-~~~~~~da~~a~~aGad~I~vs 287 (402)
+..+ . ...++.|..+++.++ +||+.= ++.+.+|+...+.+|||+|.+.
T Consensus 222 -G~~i----~-~~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~l~aGA~~Vqv~ 272 (294)
T cd04741 222 -GAYL----H-PLALGNVRTFRRLLPSEIQIIGVGGVLDGRGAFRMRLAGASAVQVG 272 (294)
T ss_pred -chhh----H-HHHHHHHHHHHHhcCCCCCEEEeCCCCCHHHHHHHHHcCCCceeEc
Confidence 1111 1 124566788888884 898764 5799999999999999999984
No 426
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=92.62 E-value=0.51 Score=46.49 Aligned_cols=83 Identities=22% Similarity=0.260 Sum_probs=59.0
Q ss_pred CccEEEEeccCHHHHHHHHHhCCcEEEEecCccc-----CCCCCcchHH----HHHHHHHHhcCCCeEEEec--CCCCHH
Q 015722 259 SLPILVKGVLTAEDASLAIQYGAAGIIVSNHGAR-----QLDYVPATVM----ALEEVVQAAKGRVPVFLDG--GVRRGT 327 (402)
Q Consensus 259 ~~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~-----~~d~~~~~~~----~l~~i~~~~~~~i~via~G--GI~~g~ 327 (402)
+.|+++-++-+.-.|+.+.++|.+++.+|+++.. ..|.+.-+++ .+.+|.+.+ ++||++|. |..+..
T Consensus 15 ~~~l~~p~v~Da~SArl~e~aGf~ai~~sg~~~~as~lG~pD~g~l~~~e~~~~~~~I~~~~--~lPv~aD~dtGyG~~~ 92 (294)
T TIGR02319 15 PEILVVPSAYDALSAKVIQQAGFPAVHMTGSGTSASMLGLPDLGFTSVSEQAINAKNIVLAV--DVPVIMDADAGYGNAM 92 (294)
T ss_pred CCcEEeecCcCHHHHHHHHHcCCCEEEecHHHHHHHHcCCCCcCCCCHHHHHHHHHHHHhcc--CCCEEEECCCCCCCcH
Confidence 4688888888999999999999999999764321 1354544443 334444444 79999986 666666
Q ss_pred HH----HHHHHcCcCEEEEc
Q 015722 328 DV----FKALALGASGVFVG 343 (402)
Q Consensus 328 dv----~kal~lGAd~V~iG 343 (402)
++ .++..+||.++.|-
T Consensus 93 ~v~r~V~~~~~aGaagi~IE 112 (294)
T TIGR02319 93 SVWRATREFERVGIVGYHLE 112 (294)
T ss_pred HHHHHHHHHHHcCCeEEEEE
Confidence 65 45556999999884
No 427
>cd00439 Transaldolase Transaldolase. Enzymes found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.
Probab=92.56 E-value=1.9 Score=41.49 Aligned_cols=98 Identities=11% Similarity=-0.005 Sum_probs=65.5
Q ss_pred HHHHHHHHccCccEEEEeccCHHHHHHHHHhCCcEEEEec-----CcccCC-CC-----CcchHHHHHHHHHHh---cCC
Q 015722 249 KDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSN-----HGARQL-DY-----VPATVMALEEVVQAA---KGR 314 (402)
Q Consensus 249 ~~i~~lr~~~~~Pv~vK~~~~~~da~~a~~aGad~I~vsn-----~gg~~~-d~-----~~~~~~~l~~i~~~~---~~~ 314 (402)
+.++.+.+. ++++-+=.+.+.+.+..+.++|++.|...- +|..++ +. +-+.+..+.++.+.. ..+
T Consensus 130 ~A~~~L~~~-GI~vn~T~vfs~~Qa~~aa~Aga~~ispfvgRid~~~~~~~~~~~~d~~~~~gi~~~~~~~~~~~~~~~~ 208 (252)
T cd00439 130 PAIKDLIAA-GISVNVTLIFSIAQYEAVADAGTSVASPFVSRIDTLMDKMLEQIGLDLRGKAGVAQVTLAYKLYKQKFKK 208 (252)
T ss_pred HHHHHHHHC-CCceeeeeecCHHHHHHHHHcCCCEEEEeccHHHHHhhhhccccccccccCcHHHHHHHHHHHHHHhCCC
Confidence 345555443 788888888999999999999999988741 121111 00 114455555555443 335
Q ss_pred CeEEEecCCCCHHHHHHHHHcCcCEEEEchHHHHhh
Q 015722 315 VPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSL 350 (402)
Q Consensus 315 i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~~~ 350 (402)
..|++.+ +++..++.+++ |+|.|-+.-..+..+
T Consensus 209 tkiL~AS-~r~~~~v~~l~--G~d~vT~~p~v~~~l 241 (252)
T cd00439 209 QRVLWAS-FSDTLYVAPLI--GCDTVTTMPDQALEA 241 (252)
T ss_pred CeEEEEe-eCCHHHHHHhh--CCCeeecCHHHHHHH
Confidence 6776655 99999998766 999999988777654
No 428
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=92.41 E-value=6.2 Score=39.29 Aligned_cols=208 Identities=19% Similarity=0.199 Sum_probs=0.0
Q ss_pred ceeecCcccCC---ceeecccccccccCChhhHHHHHHHHHcCCeEEecCCcc-CCHHHHhhcCCCceE-----------
Q 015722 96 TTTVLGFNISM---PIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWAT-SSVEEVSSTGPGIRF----------- 160 (402)
Q Consensus 96 st~i~G~~l~~---Pi~iAPm~~~~~~~~~ge~ala~aa~~~G~~~~vs~~~~-~s~eei~~~~~~~~~----------- 160 (402)
..+|.|+.+.. |++||=+|..--.+=+--.++..+|+++|+..+= +-+ .+.+.+.........
T Consensus 1 ~~~Ig~r~i~~~~~~~iIAEig~NHnG~le~A~~lIdaAk~aGADavK--fQt~~~~d~~t~~~~~~~~~i~~~~~~~sl 78 (347)
T COG2089 1 MIKIGNRTIGKDKKPFIIAEIGANHNGDLERAKELIDAAKEAGADAVK--FQTFYTPDIMTLESKNVPFKIKTLWDKVSL 78 (347)
T ss_pred CeeeCceeecCCCCcEEEeeecccccCcHHHHHHHHHHHHHcCcceee--eecccccccccccccCCccccccccccccH
Q ss_pred EEEee--cCChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCC-ccccccccccccccCCCCCchhhHHH
Q 015722 161 FQLYV--TKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPP-HLTLKNYEGLYIGKMDKTDDSGLASY 237 (402)
Q Consensus 161 ~QLy~--~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (402)
+|+|- .-+.++..++.+.|++.|.-.+ +.....+..|+.+.+..|. |+
T Consensus 79 yel~e~~~~p~e~~~~Lke~a~~~Gi~~~-----SSPfd~~svd~l~~~~~~ayKI------------------------ 129 (347)
T COG2089 79 YELYEEAETPLEWHAQLKEYARKRGIIFF-----SSPFDLTAVDLLESLNPPAYKI------------------------ 129 (347)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCeEEE-----ecCCCHHHHHHHHhcCCCeEEe------------------------
Q ss_pred hhhhcCCCccHHHHHHHHHccCccEEEE-eccCHHHHHHHH----HhCCc-EEEEecCcccCCCCCcchHHHHHHHHHHh
Q 015722 238 VANQIDRSLNWKDVKWLQTITSLPILVK-GVLTAEDASLAI----QYGAA-GIIVSNHGARQLDYVPATVMALEEVVQAA 311 (402)
Q Consensus 238 ~~~~~d~~~~~~~i~~lr~~~~~Pv~vK-~~~~~~da~~a~----~aGad-~I~vsn~gg~~~d~~~~~~~~l~~i~~~~ 311 (402)
...+.++-.+-+.....+.|+++= |+.+.++.+.+. +.|.- .+.+.....+.-...-..+..++.+++..
T Consensus 130 ----aS~E~~~~plik~iA~~~kPiIlSTGma~~~ei~~av~~~r~~g~~~i~LLhC~s~YPap~ed~NL~~i~~l~~~F 205 (347)
T COG2089 130 ----ASGEINDLPLIKYIAKKGKPIILSTGMATIEEIEEAVAILRENGNPDIALLHCTSAYPAPFEDVNLKAIPKLAEAF 205 (347)
T ss_pred ----cCccccChHHHHHHHhcCCCEEEEcccccHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCHHHhhHHHHHHHHHHh
Q ss_pred cCCCeEEEecCCCCHHHHHHHHHcCcCEE
Q 015722 312 KGRVPVFLDGGVRRGTDVFKALALGASGV 340 (402)
Q Consensus 312 ~~~i~via~GGI~~g~dv~kal~lGAd~V 340 (402)
+++|=.|.==..-.-.+.|+++||..+
T Consensus 206 --n~~vGlSDHT~g~~a~l~AvALGA~vi 232 (347)
T COG2089 206 --NAIVGLSDHTLGILAPLAAVALGASVI 232 (347)
T ss_pred --CCccccccCccchhHHHHHHHhcccce
No 429
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=92.38 E-value=3.1 Score=41.71 Aligned_cols=139 Identities=15% Similarity=0.174 Sum_probs=82.7
Q ss_pred cCChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCC
Q 015722 166 TKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRS 245 (402)
Q Consensus 166 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 245 (402)
.+|.+...++++.|.++|++++-.-.-. ...+. .+.... ..+.. ...+ ......+... .-.
T Consensus 12 ~Gdl~~A~~lI~~A~~aGadaVKfQt~~------~~~~~----~~~~~~-~~~~~---~~~~--~~~~~~~~~~---~~~ 72 (329)
T TIGR03569 12 NGSLELAKKLVDAAAEAGADAVKFQTFK------AEDLV----SKNAPK-AEYQK---INTG--AEESQLEMLK---KLE 72 (329)
T ss_pred cCcHHHHHHHHHHHHHhCCCEEEeeeCC------HHHhh----Cccccc-ccccc---cCCc--CCCcHHHHHH---HhC
Confidence 5688889999999999999998653211 11111 010000 00000 0000 0001111111 233
Q ss_pred ccHHHHHHHH---HccCccEEEEeccCHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecC
Q 015722 246 LNWKDVKWLQ---TITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGG 322 (402)
Q Consensus 246 ~~~~~i~~lr---~~~~~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GG 322 (402)
+.++..+++. +..+++++ =...+.+.+..+.+.|++.+.|.. .-...+..|..+++. ..|||.+-|
T Consensus 73 l~~e~~~~L~~~~~~~Gi~~~-stpfd~~svd~l~~~~v~~~KIaS-------~~~~n~pLL~~~A~~---gkPvilStG 141 (329)
T TIGR03569 73 LSEEDHRELKEYCESKGIEFL-STPFDLESADFLEDLGVPRFKIPS-------GEITNAPLLKKIARF---GKPVILSTG 141 (329)
T ss_pred CCHHHHHHHHHHHHHhCCcEE-EEeCCHHHHHHHHhcCCCEEEECc-------ccccCHHHHHHHHhc---CCcEEEECC
Confidence 4555544444 45567665 355788899999999999999943 123456777776653 689999999
Q ss_pred CCCHHHHHHHHH
Q 015722 323 VRRGTDVFKALA 334 (402)
Q Consensus 323 I~~g~dv~kal~ 334 (402)
..+-+++..|+.
T Consensus 142 matl~Ei~~Av~ 153 (329)
T TIGR03569 142 MATLEEIEAAVG 153 (329)
T ss_pred CCCHHHHHHHHH
Confidence 999999988775
No 430
>PLN02411 12-oxophytodienoate reductase
Probab=92.31 E-value=4 Score=41.83 Aligned_cols=92 Identities=14% Similarity=0.102 Sum_probs=48.3
Q ss_pred ceeecCcccCCceeeccccccccc--CC-hhhHHHHHHHHHcCCeEEecCCccCCHHHHhhcCCCceEEEEeecCChhHH
Q 015722 96 TTTVLGFNISMPIMIAPTAFQKMA--HP-EGECATARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVD 172 (402)
Q Consensus 96 st~i~G~~l~~Pi~iAPm~~~~~~--~~-~ge~ala~aa~~~G~~~~vs~~~~~s~eei~~~~~~~~~~QLy~~~d~~~~ 172 (402)
..+|.+.++++-|++|||+...-. .| +-.++.-+.-++-| .+++++....+.+. ...+ ...-++-....+.+
T Consensus 15 P~~ig~~~lkNRiv~aPm~~~~~~dG~~t~~~~~yy~~rA~gG-GLIIte~~~V~~~g--~~~~--~~~gi~~d~~i~~~ 89 (391)
T PLN02411 15 PYKMGRFDLSHRVVLAPMTRCRALNGIPNAALAEYYAQRSTPG-GFLISEGTLISPTA--PGFP--HVPGIYSDEQVEAW 89 (391)
T ss_pred CeeECCEEEcccCEECCcCcCcCCCCCCCHHHHHHHHHHHcCC-CEEEeCceEECccc--CcCC--CCCccCCHHHHHHH
Confidence 456788999999999999643211 11 11233333333345 66666543333221 1111 11123322233566
Q ss_pred HHHHHHHHHcCCcEEEEecCC
Q 015722 173 AQLVKRAERAGFKAIALTVDT 193 (402)
Q Consensus 173 ~~~l~ra~~~G~~ai~itvd~ 193 (402)
.++++.+++.|++++ +-+.+
T Consensus 90 ~~l~~avH~~G~~i~-~QL~H 109 (391)
T PLN02411 90 KKVVDAVHAKGSIIF-CQLWH 109 (391)
T ss_pred HHHHHHHHhcCCEEE-EeccC
Confidence 788888889998753 44443
No 431
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=92.25 E-value=1.5 Score=43.86 Aligned_cols=43 Identities=26% Similarity=0.402 Sum_probs=35.4
Q ss_pred CCccHHHHHHHHHcc-CccEEEE-eccCHHHHHHHHHhCCcEEEEe
Q 015722 244 RSLNWKDVKWLQTIT-SLPILVK-GVLTAEDASLAIQYGAAGIIVS 287 (402)
Q Consensus 244 ~~~~~~~i~~lr~~~-~~Pv~vK-~~~~~~da~~a~~aGad~I~vs 287 (402)
+...|+.+..+++.+ ++||+.= ++.+++|++.+.+ |+|+|.+.
T Consensus 189 ~~~~~~~i~~v~~~~~~iPVI~nGgI~s~eda~~~l~-~aDgVmIG 233 (333)
T PRK11815 189 PPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHLQ-HVDGVMIG 233 (333)
T ss_pred CCcCHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh-cCCEEEEc
Confidence 345788899999886 8998874 5789999999886 79999983
No 432
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=92.25 E-value=1.2 Score=40.82 Aligned_cols=79 Identities=30% Similarity=0.274 Sum_probs=51.9
Q ss_pred HHHHHHHHccCcc-EEEEeccCHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHH
Q 015722 249 KDVKWLQTITSLP-ILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGT 327 (402)
Q Consensus 249 ~~i~~lr~~~~~P-v~vK~~~~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~ 327 (402)
+.++.+++..+.- +-...+.+.++++.|.++|+|+|++. |-+ + .+.++++.. +++.+. | ..|.+
T Consensus 52 e~~~~~~~~~~~~~~g~gtvl~~d~~~~A~~~gAdgv~~p-~~~------~----~~~~~~~~~--~~~~i~-G-~~t~~ 116 (187)
T PRK07455 52 ELISQLREKLPECIIGTGTILTLEDLEEAIAAGAQFCFTP-HVD------P----ELIEAAVAQ--DIPIIP-G-ALTPT 116 (187)
T ss_pred HHHHHHHHhCCCcEEeEEEEEcHHHHHHHHHcCCCEEECC-CCC------H----HHHHHHHHc--CCCEEc-C-cCCHH
Confidence 4466666654321 21223467799999999999999652 211 1 222333333 455443 4 99999
Q ss_pred HHHHHHHcCcCEEEE
Q 015722 328 DVFKALALGASGVFV 342 (402)
Q Consensus 328 dv~kal~lGAd~V~i 342 (402)
++.++..+|||.|.+
T Consensus 117 e~~~A~~~Gadyv~~ 131 (187)
T PRK07455 117 EIVTAWQAGASCVKV 131 (187)
T ss_pred HHHHHHHCCCCEEEE
Confidence 999999999999998
No 433
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=92.24 E-value=5 Score=38.91 Aligned_cols=39 Identities=23% Similarity=0.291 Sum_probs=30.8
Q ss_pred HHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEec
Q 015722 271 EDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDG 321 (402)
Q Consensus 271 ~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~G 321 (402)
++++...++|||.|.+-+ ++. +...+|.+.+ ++|+|.-|
T Consensus 165 ~ra~a~~eAGA~~i~lE~---------v~~-~~~~~i~~~l--~iP~igiG 203 (264)
T PRK00311 165 EDAKALEEAGAFALVLEC---------VPA-ELAKEITEAL--SIPTIGIG 203 (264)
T ss_pred HHHHHHHHCCCCEEEEcC---------CCH-HHHHHHHHhC--CCCEEEec
Confidence 557888999999999832 444 6788888888 79999876
No 434
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=92.24 E-value=1.9 Score=41.84 Aligned_cols=96 Identities=20% Similarity=0.289 Sum_probs=61.5
Q ss_pred HHHHHHHHHccCccEEEEec--cCHHHH----HHHHHhCCcEEEEecCcccCCCCCc-c--hHHHHHHHHHHhcCCCeEE
Q 015722 248 WKDVKWLQTITSLPILVKGV--LTAEDA----SLAIQYGAAGIIVSNHGARQLDYVP-A--TVMALEEVVQAAKGRVPVF 318 (402)
Q Consensus 248 ~~~i~~lr~~~~~Pv~vK~~--~~~~da----~~a~~aGad~I~vsn~gg~~~d~~~-~--~~~~l~~i~~~~~~~i~vi 318 (402)
.+.++++ ..++.||++|-. .+.++. +.....|-.-+.+--.|++.....+ . .+..++.+++.. .+||+
T Consensus 124 ~~LL~~~-a~~gkPV~lk~G~~~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~~Y~~~~vdl~~i~~lk~~~--~~pV~ 200 (266)
T PRK13398 124 FELLKEV-GKTKKPILLKRGMSATLEEWLYAAEYIMSEGNENVVLCERGIRTFETYTRNTLDLAAVAVIKELS--HLPII 200 (266)
T ss_pred HHHHHHH-hcCCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCeEEEEECCCCCCCCCCHHHHHHHHHHHHHhcc--CCCEE
Confidence 4556777 457899999965 366664 4455678876666545654332222 2 334455555444 58999
Q ss_pred EecCCCC------HHHHHHHHHcCcCEEEEchHH
Q 015722 319 LDGGVRR------GTDVFKALALGASGVFVGRPV 346 (402)
Q Consensus 319 a~GGI~~------g~dv~kal~lGAd~V~iGr~~ 346 (402)
.|..=.. ...+..|+++||++++|-+-+
T Consensus 201 ~D~sHs~G~~~~v~~~~~aAva~Ga~Gl~iE~H~ 234 (266)
T PRK13398 201 VDPSHATGRRELVIPMAKAAIAAGADGLMIEVHP 234 (266)
T ss_pred EeCCCcccchhhHHHHHHHHHHcCCCEEEEeccC
Confidence 9643322 467778899999999998743
No 435
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=92.20 E-value=1.9 Score=43.22 Aligned_cols=104 Identities=18% Similarity=0.198 Sum_probs=65.0
Q ss_pred CceEEEEeecCChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHH
Q 015722 157 GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLAS 236 (402)
Q Consensus 157 ~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (402)
.|.++.|.+.-+.+.+.++++.++++|+++|.++ ++-. . + +. +.-| +.. + ..+..+| .
T Consensus 211 ~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~-NT~~-~-~--~~---~~~~-~~~--~---------~~GGlSG--~ 268 (335)
T TIGR01036 211 VPVLVKIAPDLTESDLEDIADSLVELGIDGVIAT-NTTV-S-R--SL---VQGP-KNS--D---------ETGGLSG--K 268 (335)
T ss_pred CceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEE-CCCC-c-c--cc---ccCc-ccc--C---------CCCcccC--H
Confidence 5789999876666678889999999999999864 3221 0 0 00 0000 000 0 0001111 1
Q ss_pred HhhhhcCCCccHHHHHHHHHcc--CccEE-EEeccCHHHHHHHHHhCCcEEEEe
Q 015722 237 YVANQIDRSLNWKDVKWLQTIT--SLPIL-VKGVLTAEDASLAIQYGAAGIIVS 287 (402)
Q Consensus 237 ~~~~~~d~~~~~~~i~~lr~~~--~~Pv~-vK~~~~~~da~~a~~aGad~I~vs 287 (402)
.+. ......+..+++.. ++||+ +.|+.+.+|+...+.+|||.|.+.
T Consensus 269 ~i~-----p~al~~v~~~~~~~~~~ipiig~GGI~~~~da~e~l~aGA~~Vqv~ 317 (335)
T TIGR01036 269 PLQ-----DKSTEIIRRLYAELQGRLPIIGVGGISSAQDALEKIRAGASLLQIY 317 (335)
T ss_pred HHH-----HHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCcHHHhh
Confidence 111 12456677777766 57887 567899999999999999999884
No 436
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=92.13 E-value=10 Score=36.56 Aligned_cols=66 Identities=29% Similarity=0.327 Sum_probs=42.5
Q ss_pred ccHHHHHHHHHccCccEEEEeccC-------HHHHHHHHHhCCcEEEEecCcc--cCCCCCcc--hHHHHHHHHHHh
Q 015722 246 LNWKDVKWLQTITSLPILVKGVLT-------AEDASLAIQYGAAGIIVSNHGA--RQLDYVPA--TVMALEEVVQAA 311 (402)
Q Consensus 246 ~~~~~i~~lr~~~~~Pv~vK~~~~-------~~da~~a~~aGad~I~vsn~gg--~~~d~~~~--~~~~l~~i~~~~ 311 (402)
.+...+..+++.++.||++--.-+ +..++.|..+|||++++--|-- ..+..++. +++.+.++.+.+
T Consensus 171 ~dl~ai~~lk~~~~lPVivd~SHs~G~r~~v~~~a~AAvA~GAdGl~IE~H~~P~~A~sD~~q~l~~~~l~~l~~~~ 247 (250)
T PRK13397 171 LDIMAVPIIQQKTDLPIIVDVSHSTGRRDLLLPAAKIAKAVGANGIMMEVHPDPDHALSDAAQQIDYKQLEQLGQEL 247 (250)
T ss_pred cCHHHHHHHHHHhCCCeEECCCCCCcccchHHHHHHHHHHhCCCEEEEEecCCcccccCchhhhCCHHHHHHHHHHh
Confidence 455668889888899999864411 2557889999999888866632 22322332 345555555443
No 437
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=92.11 E-value=1.3 Score=41.24 Aligned_cols=40 Identities=23% Similarity=0.392 Sum_probs=35.5
Q ss_pred cHHHHHHHHHccCccEEEEe-ccCHHHHHHHHHhCCcEEEE
Q 015722 247 NWKDVKWLQTITSLPILVKG-VLTAEDASLAIQYGAAGIIV 286 (402)
Q Consensus 247 ~~~~i~~lr~~~~~Pv~vK~-~~~~~da~~a~~aGad~I~v 286 (402)
+.+.++.+++.++.|+++.+ +.+.++++.+.++|+|+|++
T Consensus 164 ~~e~i~~Vk~~~~~Pv~vGGGIrs~e~a~~l~~~GAD~VVV 204 (205)
T TIGR01769 164 NPETISLVKKASGIPLIVGGGIRSPEIAYEIVLAGADAIVT 204 (205)
T ss_pred CHHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHcCCCEEEe
Confidence 35778999999999999985 68999999999999999987
No 438
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=92.10 E-value=1.2 Score=44.34 Aligned_cols=100 Identities=12% Similarity=0.141 Sum_probs=67.1
Q ss_pred cHHHHHHHHHc--cCccEEEEeccCHHHHHHHHHhCCcEEEEecCcccCCCC-------------CcchHHHHHHHHHHh
Q 015722 247 NWKDVKWLQTI--TSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDY-------------VPATVMALEEVVQAA 311 (402)
Q Consensus 247 ~~~~i~~lr~~--~~~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~~~d~-------------~~~~~~~l~~i~~~~ 311 (402)
+|+=++.++.. -++++-+=.+.+.+.+..|.++|++.|... -||-.|+ .-+.+..+.++.+.+
T Consensus 134 T~eGi~A~~~L~~~GI~vn~TlvFS~~Qa~~aa~AGa~~ISPf--VgRi~d~~~~~~~~~~~~~~~d~Gv~~v~~i~~~~ 211 (313)
T cd00957 134 TWEGIQAAKQLEKEGIHCNLTLLFSFAQAVACAEAGVTLISPF--VGRILDWYKKHSGDKAYTAEEDPGVASVKKIYNYY 211 (313)
T ss_pred CHHHHHHHHHHHHCCCceeeeeecCHHHHHHHHHcCCCEEEee--cchHHHhhhhccccccCCccCCcHHHHHHHHHHHH
Confidence 45444444332 278888778899999999999999988764 2332222 113445555555544
Q ss_pred ---cCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHHHhhh
Q 015722 312 ---KGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLA 351 (402)
Q Consensus 312 ---~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~~~~ 351 (402)
+.+..|++ ..+|+..++.+ .+|||.+-+.-.++..+.
T Consensus 212 ~~~~~~T~vma-ASfRn~~~v~~--laG~d~~Ti~p~ll~~L~ 251 (313)
T cd00957 212 KKFGYKTKVMG-ASFRNIGQILA--LAGCDYLTISPALLEELK 251 (313)
T ss_pred HHcCCCcEEEe-cccCCHHHHHH--HhCCCeEEcCHHHHHHHH
Confidence 23455554 55999999997 589999999988876654
No 439
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=92.08 E-value=2.3 Score=41.06 Aligned_cols=96 Identities=19% Similarity=0.266 Sum_probs=61.4
Q ss_pred HHHHHHHHHccCccEEEEec-c-CHHHH----HHHHHhCCcEEEEecCcccCCCC---CcchHHHHHHHHHHhcCCCeEE
Q 015722 248 WKDVKWLQTITSLPILVKGV-L-TAEDA----SLAIQYGAAGIIVSNHGARQLDY---VPATVMALEEVVQAAKGRVPVF 318 (402)
Q Consensus 248 ~~~i~~lr~~~~~Pv~vK~~-~-~~~da----~~a~~aGad~I~vsn~gg~~~d~---~~~~~~~l~~i~~~~~~~i~vi 318 (402)
.+.++.+.+ ++.||++|-. . +.++. +.+.+.|.+-|++--.|-+..+. -...+..+..+++.. .+||+
T Consensus 122 ~~LL~~~a~-~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~--~~pV~ 198 (260)
T TIGR01361 122 FELLKEVGK-QGKPVLLKRGMGNTIEEWLYAAEYILSSGNGNVILCERGIRTFEKATRNTLDLSAVPVLKKET--HLPII 198 (260)
T ss_pred HHHHHHHhc-CCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHhh--CCCEE
Confidence 455666654 6899999965 3 67664 44557888777764333322212 124567777777655 69999
Q ss_pred EecCCCC------HHHHHHHHHcCcCEEEEchHH
Q 015722 319 LDGGVRR------GTDVFKALALGASGVFVGRPV 346 (402)
Q Consensus 319 a~GGI~~------g~dv~kal~lGAd~V~iGr~~ 346 (402)
.|.+=.. ..-...|+++||++++|-+-+
T Consensus 199 ~ds~Hs~G~r~~~~~~~~aAva~Ga~gl~iE~H~ 232 (260)
T TIGR01361 199 VDPSHAAGRRDLVIPLAKAAIAAGADGLMIEVHP 232 (260)
T ss_pred EcCCCCCCccchHHHHHHHHHHcCCCEEEEEeCC
Confidence 9433222 234457888999999998744
No 440
>COG0176 MipB Transaldolase [Carbohydrate transport and metabolism]
Probab=92.04 E-value=4.1 Score=38.89 Aligned_cols=101 Identities=21% Similarity=0.167 Sum_probs=71.5
Q ss_pred HHHHHHHHccCccEEEEeccCHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHh---cCC-CeEEEecCCC
Q 015722 249 KDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAA---KGR-VPVFLDGGVR 324 (402)
Q Consensus 249 ~~i~~lr~~~~~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~---~~~-i~via~GGI~ 324 (402)
+.++.+++. ++++-+=.+.+.+.|..+.++|++.|.. .-||-.|++......+.++++.+ ... ..+++- +++
T Consensus 106 ~Ai~~L~~e-GI~~NvTLiFS~~QAl~aa~aga~~iSp--FvgRi~D~~~d~~~~I~~~~~iy~~y~~~~~~t~va-s~~ 181 (239)
T COG0176 106 KAIKALEAE-GIKTNVTLIFSAAQALLAAEAGATYISP--FVGRIDDWGIDGMLGIAEAREIYDYYKQHGAKTLVA-SAR 181 (239)
T ss_pred HHHHHHHHC-CCeeeEEEEecHHHHHHHHHhCCeEEEe--ecchHHhhccCchHHHHHHHHHHHHhccccceEEEe-cCc
Confidence 334555443 5677766778999999999999988776 34565666655554555554433 223 456664 499
Q ss_pred CHHHHHHHHHcCcCEEEEchHHHHhhhcC
Q 015722 325 RGTDVFKALALGASGVFVGRPVPFSLAVD 353 (402)
Q Consensus 325 ~g~dv~kal~lGAd~V~iGr~~l~~~~~~ 353 (402)
.+.++..+..+|||.+-+.-..+-.+...
T Consensus 182 ~~~~~~~~~l~G~d~~Tip~~~l~~l~~~ 210 (239)
T COG0176 182 FPNHVYIAALAGADVLTIPPDLLKQLLKH 210 (239)
T ss_pred cHHHHHHHHHhCCCcccCCHHHHHHHHhc
Confidence 99999999999999999998887766554
No 441
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=91.99 E-value=13 Score=36.43 Aligned_cols=187 Identities=18% Similarity=0.130 Sum_probs=101.6
Q ss_pred eeecccccccccCChhhHHHHHHHHHcCCeEEe-cCCc-----------cCCHHHHh-------hcCCCceEEEEee-cC
Q 015722 108 IMIAPTAFQKMAHPEGECATARAASAAGTIMTL-SSWA-----------TSSVEEVS-------STGPGIRFFQLYV-TK 167 (402)
Q Consensus 108 i~iAPm~~~~~~~~~ge~ala~aa~~~G~~~~v-s~~~-----------~~s~eei~-------~~~~~~~~~QLy~-~~ 167 (402)
.++.|-.. |...|+.+.++|...+. |+.. ..+.+|+. +...-|..+-+=. +.
T Consensus 14 ~l~~p~~~--------Da~SAri~e~aGf~Ai~~sg~~~a~~lG~pD~g~lt~~e~~~~~~~I~~~~~iPviaD~d~GyG 85 (285)
T TIGR02317 14 ILQIPGAI--------NAMAALLAERAGFEAIYLSGAAVAASLGLPDLGITTLDEVAEDARRITRVTDLPLLVDADTGFG 85 (285)
T ss_pred cEEeCCCC--------CHHHHHHHHHcCCCEEEEcHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCCEEEECCCCCC
Confidence 45667544 44678889998876544 3221 12444432 2222344443311 24
Q ss_pred ChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCCcc
Q 015722 168 HRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLN 247 (402)
Q Consensus 168 d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 247 (402)
+...+.+.+++.+++|+.+|.|. |. +..+| .++ .+. ...+ +...-
T Consensus 86 ~~~~v~~tv~~~~~aG~agi~IE-Dq-~~pK~-----cgh-~~g-----------------------~~lv----~~ee~ 130 (285)
T TIGR02317 86 EAFNVARTVREMEDAGAAAVHIE-DQ-VLPKR-----CGH-LPG-----------------------KELV----SREEM 130 (285)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEe-cC-CCccc-----cCC-CCC-----------------------cccc----CHHHH
Confidence 56677788888889998887663 21 11111 111 000 0000 11111
Q ss_pred HHHHHHHHHcc-CccEEEEec------cCHHH----HHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCe
Q 015722 248 WKDVKWLQTIT-SLPILVKGV------LTAED----ASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVP 316 (402)
Q Consensus 248 ~~~i~~lr~~~-~~Pv~vK~~------~~~~d----a~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~ 316 (402)
.+.|+..++.. +.++++=-. ...++ ++...++|||.|.+ +| +.+.+.+.++.+.+ +.|
T Consensus 131 ~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~ay~~AGAD~vfi--~g-------~~~~e~i~~~~~~i--~~P 199 (285)
T TIGR02317 131 VDKIAAAVDAKRDEDFVIIARTDARAVEGLDAAIERAKAYVEAGADMIFP--EA-------LTSLEEFRQFAKAV--KVP 199 (285)
T ss_pred HHHHHHHHHhccCCCEEEEEEcCcccccCHHHHHHHHHHHHHcCCCEEEe--CC-------CCCHHHHHHHHHhc--CCC
Confidence 23455555543 334444322 12334 45667999999998 33 45677788888877 467
Q ss_pred EE---EecCCCCH-HHHHHHHHcCcCEEEEchHHHHh
Q 015722 317 VF---LDGGVRRG-TDVFKALALGASGVFVGRPVPFS 349 (402)
Q Consensus 317 vi---a~GGI~~g-~dv~kal~lGAd~V~iGr~~l~~ 349 (402)
++ ..+|- ++ -++.+.-.+|.+.|..|..++++
T Consensus 200 l~~n~~~~~~-~p~~s~~eL~~lGv~~v~~~~~~~~a 235 (285)
T TIGR02317 200 LLANMTEFGK-TPLFTADELREAGYKMVIYPVTAFRA 235 (285)
T ss_pred EEEEeccCCC-CCCCCHHHHHHcCCcEEEEchHHHHH
Confidence 63 33442 22 24566667999999999877765
No 442
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=91.98 E-value=0.9 Score=43.58 Aligned_cols=73 Identities=23% Similarity=0.235 Sum_probs=52.3
Q ss_pred cCHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEe-----cCCCCH--------HHHHHHHH
Q 015722 268 LTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLD-----GGVRRG--------TDVFKALA 334 (402)
Q Consensus 268 ~~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~-----GGI~~g--------~dv~kal~ 334 (402)
.+++++..|.+.|||.|-+... ....+--|+...+..+++.+ ++||.+- |++... .|+..+..
T Consensus 9 ~s~~~a~~A~~~GAdRiELc~~--L~~GGlTPS~g~i~~~~~~~--~ipv~vMIRPR~gdF~Ys~~E~~~M~~di~~~~~ 84 (248)
T PRK11572 9 YSMECALTAQQAGADRIELCAA--PKEGGLTPSLGVLKSVRERV--TIPVHPIIRPRGGDFCYSDGEFAAMLEDIATVRE 84 (248)
T ss_pred CCHHHHHHHHHcCCCEEEEccC--cCCCCcCCCHHHHHHHHHhc--CCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 6899999999999999998532 11112246778888888876 6887764 333222 46677777
Q ss_pred cCcCEEEEch
Q 015722 335 LGASGVFVGR 344 (402)
Q Consensus 335 lGAd~V~iGr 344 (402)
+|||+|.+|-
T Consensus 85 ~GadGvV~G~ 94 (248)
T PRK11572 85 LGFPGLVTGV 94 (248)
T ss_pred cCCCEEEEee
Confidence 9999999994
No 443
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=91.82 E-value=1.2 Score=44.80 Aligned_cols=82 Identities=22% Similarity=0.298 Sum_probs=59.0
Q ss_pred ccEEEEec------cCHHHHHHHHHhCCcEEEEecC----ccc--------CCC-------------------------C
Q 015722 260 LPILVKGV------LTAEDASLAIQYGAAGIIVSNH----GAR--------QLD-------------------------Y 296 (402)
Q Consensus 260 ~Pv~vK~~------~~~~da~~a~~aGad~I~vsn~----gg~--------~~d-------------------------~ 296 (402)
.|+++-.- .+.+..+++.++|+++|+++-- |-| +.. .
T Consensus 118 ~~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (344)
T cd02922 118 QPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFID 197 (344)
T ss_pred CcEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHHHHHhhccC
Confidence 57766432 2345678999999999999621 111 100 0
Q ss_pred CcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEch
Q 015722 297 VPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGR 344 (402)
Q Consensus 297 ~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr 344 (402)
+..+++.|.++++.. ++||++- ||.+.+|+.++..+|+|++.+..
T Consensus 198 ~~~~~~~i~~l~~~~--~~PvivK-gv~~~~dA~~a~~~G~d~I~vsn 242 (344)
T cd02922 198 PTLTWDDIKWLRKHT--KLPIVLK-GVQTVEDAVLAAEYGVDGIVLSN 242 (344)
T ss_pred CCCCHHHHHHHHHhc--CCcEEEE-cCCCHHHHHHHHHcCCCEEEEEC
Confidence 224577888888776 7899987 68999999999999999999875
No 444
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=91.80 E-value=8.9 Score=35.67 Aligned_cols=44 Identities=27% Similarity=0.352 Sum_probs=33.2
Q ss_pred HHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHHH
Q 015722 303 ALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 348 (402)
Q Consensus 303 ~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~ 348 (402)
.+.+++++. ++.|+-+-=||.+++++...=.- ||+|.+|+.++.
T Consensus 197 L~qrvrk~t-~dtPlAVGFGvst~EHf~qVgsv-aDGVvvGSkiv~ 240 (268)
T KOG4175|consen 197 LLQRVRKAT-GDTPLAVGFGVSTPEHFKQVGSV-ADGVVVGSKIVK 240 (268)
T ss_pred HHHHHHHhc-CCCceeEeeccCCHHHHHhhhhh-ccceEecHHHHH
Confidence 445555554 36788777799999998765555 999999998765
No 445
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=91.64 E-value=0.46 Score=45.05 Aligned_cols=64 Identities=25% Similarity=0.359 Sum_probs=52.8
Q ss_pred HHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHH
Q 015722 276 AIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVP 347 (402)
Q Consensus 276 a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l 347 (402)
....++|+|+++++. .+.++..+.|..+++++ +.|+++.+|+. .+.+.+.|.. ||++.+|+.+=
T Consensus 173 ver~~aDaVI~tG~~----TG~~~d~~el~~a~~~~--~~pvlvGSGv~-~eN~~~~l~~-adG~IvgT~lK 236 (263)
T COG0434 173 VERGLADAVIVTGSR----TGSPPDLEELKLAKEAV--DTPVLVGSGVN-PENIEELLKI-ADGVIVGTSLK 236 (263)
T ss_pred HHccCCCEEEEeccc----CCCCCCHHHHHHHHhcc--CCCEEEecCCC-HHHHHHHHHH-cCceEEEEEEc
Confidence 566789999998752 25578899999988887 59999999997 7888888887 99999999653
No 446
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=91.62 E-value=0.43 Score=43.42 Aligned_cols=41 Identities=34% Similarity=0.453 Sum_probs=32.3
Q ss_pred HHHHHHHHHccCccEEEEe-ccCHHHHHHHHHhCCcEEEEec
Q 015722 248 WKDVKWLQTITSLPILVKG-VLTAEDASLAIQYGAAGIIVSN 288 (402)
Q Consensus 248 ~~~i~~lr~~~~~Pv~vK~-~~~~~da~~a~~aGad~I~vsn 288 (402)
.+.++++++.++.|++..| +.+.+++..+.++||++|..|+
T Consensus 129 p~vi~~i~~~~~~PiIAGGLI~~~e~v~~al~aGa~aVSTS~ 170 (175)
T PF04309_consen 129 PKVIKKIREETNIPIIAGGLIRTKEDVEEALKAGADAVSTSN 170 (175)
T ss_dssp HHHHCCCCCCCSS-EEEESS--SHHHHHHHCCTTCEEEEE--
T ss_pred HHHHHHHHHhcCCCEEeecccCCHHHHHHHHHcCCEEEEcCC
Confidence 3668888898999999886 5789999999999999999876
No 447
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=91.58 E-value=9.9 Score=34.73 Aligned_cols=42 Identities=24% Similarity=0.441 Sum_probs=36.6
Q ss_pred ccHHHHHHHHHccC-ccEEEEeccCHHHHHHHHHhCCcEEEEe
Q 015722 246 LNWKDVKWLQTITS-LPILVKGVLTAEDASLAIQYGAAGIIVS 287 (402)
Q Consensus 246 ~~~~~i~~lr~~~~-~Pv~vK~~~~~~da~~a~~aGad~I~vs 287 (402)
..++.++++++..+ .||++=|..+.+++..+.++|+|+|.+.
T Consensus 146 ~g~~~~~~~~~~~~~~~v~a~GGI~~~~i~~~~~~Ga~gv~~g 188 (212)
T PRK00043 146 QGLEGLREIRAAVGDIPIVAIGGITPENAPEVLEAGADGVAVV 188 (212)
T ss_pred CCHHHHHHHHHhcCCCCEEEECCcCHHHHHHHHHcCCCEEEEe
Confidence 35788999988886 9999888779999999999999999984
No 448
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=91.46 E-value=1.9 Score=39.68 Aligned_cols=112 Identities=19% Similarity=0.153 Sum_probs=70.5
Q ss_pred HHHHHHHHcc-CccEEEEeccCHHHHHHHHHhCCcEEEEec-CcccCCCCCcch-HHHHHHH---HHHhcCCCeEEEecC
Q 015722 249 KDVKWLQTIT-SLPILVKGVLTAEDASLAIQYGAAGIIVSN-HGARQLDYVPAT-VMALEEV---VQAAKGRVPVFLDGG 322 (402)
Q Consensus 249 ~~i~~lr~~~-~~Pv~vK~~~~~~da~~a~~aGad~I~vsn-~gg~~~d~~~~~-~~~l~~i---~~~~~~~i~via~GG 322 (402)
+.++.+|+.- +.=+.+|-...++++....+ -+|.+-|-. ..|- +|..- -+.++.+ ++.. ++..|-+|||
T Consensus 103 ~lv~~ir~~Gmk~G~alkPgT~Ve~~~~~~~-~~D~vLvMtVePGF---GGQkFme~mm~KV~~lR~ky-p~l~ievDGG 177 (224)
T KOG3111|consen 103 ELVEKIREKGMKVGLALKPGTPVEDLEPLAE-HVDMVLVMTVEPGF---GGQKFMEDMMPKVEWLREKY-PNLDIEVDGG 177 (224)
T ss_pred HHHHHHHHcCCeeeEEeCCCCcHHHHHHhhc-cccEEEEEEecCCC---chhhhHHHHHHHHHHHHHhC-CCceEEecCC
Confidence 4578888753 33455565567788776655 467665532 1110 12221 1333433 3332 3677779999
Q ss_pred CCCHHHHHHHHHcCcCEEEEchHHHHhhhcCChHHHHHHHHHHHHHHHHH
Q 015722 323 VRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELT 372 (402)
Q Consensus 323 I~~g~dv~kal~lGAd~V~iGr~~l~~~~~~G~~gv~~~i~~l~~el~~~ 372 (402)
+. ++.+-|+..+||+.+..|+..+.+ ..-.++|..|+++.+..
T Consensus 178 v~-~~ti~~~a~AGAN~iVaGsavf~a------~d~~~vi~~lr~~v~~a 220 (224)
T KOG3111|consen 178 VG-PSTIDKAAEAGANMIVAGSAVFGA------ADPSDVISLLRNSVEKA 220 (224)
T ss_pred cC-cchHHHHHHcCCCEEEecceeecC------CCHHHHHHHHHHHHhhh
Confidence 97 888999999999999999987653 22346777777776543
No 449
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=91.42 E-value=1.5 Score=42.35 Aligned_cols=84 Identities=17% Similarity=0.113 Sum_probs=55.3
Q ss_pred CccEEEEeccCHHHHHHHHHhCCcEEEEecCccc----CCCCCcchHHH-HHHHHHHhc-CCCe-EEEecCCC---C-HH
Q 015722 259 SLPILVKGVLTAEDASLAIQYGAAGIIVSNHGAR----QLDYVPATVMA-LEEVVQAAK-GRVP-VFLDGGVR---R-GT 327 (402)
Q Consensus 259 ~~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~----~~d~~~~~~~~-l~~i~~~~~-~~i~-via~GGI~---~-g~ 327 (402)
+.|+++-++-+.-.|+.+.++|+|.|.++...+. ..|.++.+++. +..++...+ .+.| |++|-+.. + .+
T Consensus 11 ~~~l~~~~ayD~~sA~l~e~aG~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~~~p~viaD~~fg~y~~~~~ 90 (254)
T cd06557 11 GEKIVMLTAYDYPTAKLADEAGVDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGAPRALVVADMPFGSYQTSPE 90 (254)
T ss_pred CCcEEEEeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCeEEEeCCCCcccCCHH
Confidence 5688888888888999999999999975422111 13455555543 333333222 2678 88876644 3 34
Q ss_pred H----HHHHHH-cCcCEEEE
Q 015722 328 D----VFKALA-LGASGVFV 342 (402)
Q Consensus 328 d----v~kal~-lGAd~V~i 342 (402)
+ +.+.+. +||++|.|
T Consensus 91 ~av~~a~r~~~~aGa~aVki 110 (254)
T cd06557 91 QALRNAARLMKEAGADAVKL 110 (254)
T ss_pred HHHHHHHHHHHHhCCeEEEE
Confidence 4 567777 99999999
No 450
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=91.35 E-value=1.6 Score=43.83 Aligned_cols=95 Identities=13% Similarity=0.102 Sum_probs=61.8
Q ss_pred HhhcCCCceEEEEee------cCChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccc
Q 015722 151 VSSTGPGIRFFQLYV------TKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIG 224 (402)
Q Consensus 151 i~~~~~~~~~~QLy~------~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~ 224 (402)
|.+..+.+..+.+-. ..+.+...+++++++++|++.|.|+..+... +. . .
T Consensus 202 ir~~~~~~v~vRis~~d~~~~G~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~-------------~~-~--~-------- 257 (337)
T PRK13523 202 VKEVWDGPLFVRISASDYHPGGLTVQDYVQYAKWMKEQGVDLIDVSSGAVVP-------------AR-I--D-------- 257 (337)
T ss_pred HHHhcCCCeEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCC-------------CC-C--C--------
Confidence 333333445555543 1255667788888888999998876653110 00 0 0
Q ss_pred cCCCCCchhhHHHhhhhcCCCccHHHHHHHHHccCccEEEEe-ccCHHHHHHHHHhC-CcEEEE
Q 015722 225 KMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKG-VLTAEDASLAIQYG-AAGIIV 286 (402)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~Pv~vK~-~~~~~da~~a~~aG-ad~I~v 286 (402)
..+.+.|+..+.+|+.+++||+.-+ +.++++++.+++.| +|.|.+
T Consensus 258 -----------------~~~~~~~~~~~~ik~~~~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~ 304 (337)
T PRK13523 258 -----------------VYPGYQVPFAEHIREHANIATGAVGLITSGAQAEEILQNNRADLIFI 304 (337)
T ss_pred -----------------CCccccHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCChHHh
Confidence 0112356778899999999987655 46899999999887 999876
No 451
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=91.34 E-value=11 Score=35.90 Aligned_cols=88 Identities=11% Similarity=0.141 Sum_probs=55.7
Q ss_pred cCChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCC
Q 015722 166 TKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRS 245 (402)
Q Consensus 166 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 245 (402)
..+.+.+.++++..++. +++|.+++-||-+- -.+.... ......+. ..
T Consensus 14 ~p~~~~~~~~~~~l~~~-ad~iElgip~sdp~------------adG~~i~---------------~~~~~a~~----~g 61 (244)
T PRK13125 14 YPNVESFKEFIIGLVEL-VDILELGIPPKYPK------------YDGPVIR---------------KSHRKVKG----LD 61 (244)
T ss_pred CCCHHHHHHHHHHHHhh-CCEEEECCCCCCCC------------CCCHHHH---------------HHHHHHHH----cC
Confidence 34667788888888887 99999988665320 0000000 00011111 11
Q ss_pred ccHHHHHHHHHccCccEE--EEe---ccCHHH-HHHHHHhCCcEEEE
Q 015722 246 LNWKDVKWLQTITSLPIL--VKG---VLTAED-ASLAIQYGAAGIIV 286 (402)
Q Consensus 246 ~~~~~i~~lr~~~~~Pv~--vK~---~~~~~d-a~~a~~aGad~I~v 286 (402)
. ++.++++|+.+++|+. +|. +..++. ++.+.++|+|+|++
T Consensus 62 ~-~~~v~~vr~~~~~Pl~lM~y~n~~~~~~~~~i~~~~~~Gadgvii 107 (244)
T PRK13125 62 I-WPLLEEVRKDVSVPIILMTYLEDYVDSLDNFLNMARDVGADGVLF 107 (244)
T ss_pred c-HHHHHHHhccCCCCEEEEEecchhhhCHHHHHHHHHHcCCCEEEE
Confidence 1 6889999988889974 443 235555 78899999999999
No 452
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=91.33 E-value=2.3 Score=41.24 Aligned_cols=94 Identities=16% Similarity=0.064 Sum_probs=59.6
Q ss_pred HHHHHHHHHccCccEEEEeccCHHHHHHHHHhCCcEEEEecCccc----CCCCCcchHHH-HHHHHHHhc-CCC-eEEEe
Q 015722 248 WKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGAR----QLDYVPATVMA-LEEVVQAAK-GRV-PVFLD 320 (402)
Q Consensus 248 ~~~i~~lr~~~~~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~----~~d~~~~~~~~-l~~i~~~~~-~~i-~via~ 320 (402)
...++.+++. +.|+++-++-+.-.|+.+.++|+|.|.++...+. ..|.++.+++. +..++...+ .+. +|++|
T Consensus 4 ~~~lr~~~~~-g~~i~~~tayD~~sArl~e~aG~d~i~vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~~~p~vvaD 82 (264)
T PRK00311 4 ISDLQKMKQE-GEKIVMLTAYDYPFAKLFDEAGVDVILVGDSLGMVVLGYDSTLPVTLDDMIYHTKAVARGAPRALVVAD 82 (264)
T ss_pred HHHHHHHHhC-CCCEEEEeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCcEEEe
Confidence 3445554443 4688888888889999999999999986422111 13455555544 333332222 145 48888
Q ss_pred cCCCCH----HH----HHHHHH-cCcCEEEE
Q 015722 321 GGVRRG----TD----VFKALA-LGASGVFV 342 (402)
Q Consensus 321 GGI~~g----~d----v~kal~-lGAd~V~i 342 (402)
-+..+. ++ +.+.+. +||++|-|
T Consensus 83 ~pfg~y~~~~~~av~~a~r~~~~aGa~aVki 113 (264)
T PRK00311 83 MPFGSYQASPEQALRNAGRLMKEAGAHAVKL 113 (264)
T ss_pred CCCCCccCCHHHHHHHHHHHHHHhCCeEEEE
Confidence 764443 66 466777 89999999
No 453
>PTZ00411 transaldolase-like protein; Provisional
Probab=91.01 E-value=2.3 Score=42.58 Aligned_cols=95 Identities=16% Similarity=0.177 Sum_probs=64.9
Q ss_pred HHHHHHccCccEEEEeccCHHHHHHHHHhCCcEEEEecCcccCCCC-------------CcchHHHHHHHHHHhc---CC
Q 015722 251 VKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDY-------------VPATVMALEEVVQAAK---GR 314 (402)
Q Consensus 251 i~~lr~~~~~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~~~d~-------------~~~~~~~l~~i~~~~~---~~ 314 (402)
++.+.+. ++++-+=.+.+...|..|.++|++.|... -||-.|+ +.+.+..+.++.+... .+
T Consensus 153 a~~L~~e-GI~~N~TlvFS~~QA~aaaeAGa~~ISPf--VGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~g~~ 229 (333)
T PTZ00411 153 AKALEKE-GIHCNLTLLFSFAQAVACAQAGVTLISPF--VGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYYKKHGYK 229 (333)
T ss_pred HHHHHHC-CCceeEeEecCHHHHHHHHHcCCCEEEee--cchHHHhcccccccccccccCCchHHHHHHHHHHHHHcCCC
Confidence 4444433 77887778899999999999999988764 2332221 3344556666655442 23
Q ss_pred CeEEEecCCCCHHHHHHHHHcCcCEEEEchHHHHhhh
Q 015722 315 VPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLA 351 (402)
Q Consensus 315 i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~~~~ 351 (402)
. .|....+|+..++.+ .+|||.+-|.-.++..+.
T Consensus 230 T-~Im~ASfRn~~qi~~--laG~D~lTi~p~ll~~L~ 263 (333)
T PTZ00411 230 T-IVMGASFRNTGEILE--LAGCDKLTISPKLLEELA 263 (333)
T ss_pred e-EEEecccCCHHHHHH--HHCCCEEeCCHHHHHHHH
Confidence 4 445566999999988 389999998877776554
No 454
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=90.93 E-value=1.2 Score=43.56 Aligned_cols=84 Identities=24% Similarity=0.330 Sum_probs=59.8
Q ss_pred CccEEEEeccCHHHHHHHHHhCCcEEEEecCccc----CCCCCcchHHH----HHHHHHHhcCCCeEEEec--CCCCHHH
Q 015722 259 SLPILVKGVLTAEDASLAIQYGAAGIIVSNHGAR----QLDYVPATVMA----LEEVVQAAKGRVPVFLDG--GVRRGTD 328 (402)
Q Consensus 259 ~~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~----~~d~~~~~~~~----l~~i~~~~~~~i~via~G--GI~~g~d 328 (402)
+.|+++-++-++-.|+.+.++|.++|.+|++|-. -.|.+..+++. ..+|.+++ ++||++|. |...+..
T Consensus 17 ~~~~~~pg~~d~~sA~la~~aGF~al~~sg~~vA~slG~pD~~~~t~~e~~~~vrrI~~a~--~lPv~vD~dtGfG~~~n 94 (289)
T COG2513 17 GDPLVLPGAWDAGSALLAERAGFKALYLSGAGVAASLGLPDLGITTLDEVLADARRITDAV--DLPVLVDIDTGFGEALN 94 (289)
T ss_pred CCCEEecCCcCHHHHHHHHHcCCeEEEeccHHHHHhcCCCccccccHHHHHHHHHHHHhhc--CCceEEeccCCCCcHHH
Confidence 4688888999999999999999999999876421 13566665543 34444444 89999986 5555444
Q ss_pred HH----HHHHcCcCEEEEch
Q 015722 329 VF----KALALGASGVFVGR 344 (402)
Q Consensus 329 v~----kal~lGAd~V~iGr 344 (402)
+. +++.+|+.++.|=-
T Consensus 95 vartV~~~~~aG~agi~iED 114 (289)
T COG2513 95 VARTVRELEQAGAAGIHIED 114 (289)
T ss_pred HHHHHHHHHHcCcceeeeee
Confidence 43 55568999888754
No 455
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=90.86 E-value=6 Score=40.12 Aligned_cols=159 Identities=19% Similarity=0.217 Sum_probs=83.1
Q ss_pred cccccccccCChhhHHHHHHHHHcCCeEEecCCccCCHHHHhhcCCCceEEEEeecCChhHHHHHHHHHHHcCCcEEEEe
Q 015722 111 APTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALT 190 (402)
Q Consensus 111 APm~~~~~~~~~ge~ala~aa~~~G~~~~vs~~~~~s~eei~~~~~~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~it 190 (402)
+|-++.++.. ++-..+.+.|.+.|++++.+-+...+++.+.+..+ ++|+-. .+-.. ..+++.+.+.|-..+ +
T Consensus 159 sp~~f~g~~~-e~l~~L~~~~~~~Gl~~~t~v~d~~~~~~l~~~vd---~lkI~s-~~~~n-~~LL~~~a~~gkPVi-l- 230 (360)
T PRK12595 159 SPYDFQGLGV-EGLKILKQVADEYGLAVISEIVNPADVEVALDYVD---VIQIGA-RNMQN-FELLKAAGRVNKPVL-L- 230 (360)
T ss_pred CCccccCCCH-HHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHHhCC---eEEECc-ccccC-HHHHHHHHccCCcEE-E-
Confidence 3444555433 56678999999999998766555556666665533 666632 11111 356777666664333 2
Q ss_pred cCCCCCCchhHHHhhhcCCCCcccc-ccccccccccCCCCCchhhHHHhhhhcCCCccHHHHHHHHHccCccEEEEec--
Q 015722 191 VDTPRLGRREADIKNRFVLPPHLTL-KNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGV-- 267 (402)
Q Consensus 191 vd~p~~g~r~~d~r~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~~Pv~vK~~-- 267 (402)
-++..+ ...|+..... .+.. .| .++.. .+ . +...|.. ....++++..+..+++.+++||++--.
T Consensus 231 -k~G~~~-t~~e~~~Ave---~i~~~Gn-~~i~L--~e-r---g~s~yp~-~~~~~ldl~~i~~lk~~~~~PV~~d~~Hs 297 (360)
T PRK12595 231 -KRGLSA-TIEEFIYAAE---YIMSQGN-GQIIL--CE-R---GIRTYEK-ATRNTLDISAVPILKQETHLPVMVDVTHS 297 (360)
T ss_pred -eCCCCC-CHHHHHHHHH---HHHHCCC-CCEEE--EC-C---ccCCCCC-CCCCCcCHHHHHHHHHHhCCCEEEeCCCC
Confidence 222210 1222222211 0000 00 00000 00 0 0000110 012235788899999989999987321
Q ss_pred cC-----HHHHHHHHHhCCcEEEEecCc
Q 015722 268 LT-----AEDASLAIQYGAAGIIVSNHG 290 (402)
Q Consensus 268 ~~-----~~da~~a~~aGad~I~vsn~g 290 (402)
.. +..+..|..+||||+++--|-
T Consensus 298 ~G~r~~~~~~a~aAva~GAdg~~iE~H~ 325 (360)
T PRK12595 298 TGRRDLLLPTAKAALAIGADGVMAEVHP 325 (360)
T ss_pred CcchhhHHHHHHHHHHcCCCeEEEEecC
Confidence 11 235677899999999987774
No 456
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=90.84 E-value=1.4 Score=43.29 Aligned_cols=83 Identities=20% Similarity=0.164 Sum_probs=57.8
Q ss_pred CccEEEEeccCHHHHHHHHHhCCcEEEEecCccc----CCCCCcchHH----HHHHHHHHhcCCCeEEEec--CCCCHHH
Q 015722 259 SLPILVKGVLTAEDASLAIQYGAAGIIVSNHGAR----QLDYVPATVM----ALEEVVQAAKGRVPVFLDG--GVRRGTD 328 (402)
Q Consensus 259 ~~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~----~~d~~~~~~~----~l~~i~~~~~~~i~via~G--GI~~g~d 328 (402)
+.++.+-++.+.-.|+.+.++|+++|.+|++|-. ..|.+.-+++ .+.+|.+.+ ++||++|. |..+..+
T Consensus 14 ~~~~~~pg~~D~lSAri~e~aGf~ai~~ss~~va~slG~pD~g~l~~~e~~~~~~~I~~~~--~lPv~aD~d~GyG~~~~ 91 (290)
T TIGR02321 14 GRLFTAMAAHNPLVAKLAEQAGFGGIWGSGFELSASYAVPDANILSMSTHLEMMRAIASTV--SIPLIADIDTGFGNAVN 91 (290)
T ss_pred CCCEEeccccCHHHHHHHHHcCCCEEEECHHHHHHHCCCCCcccCCHHHHHHHHHHHHhcc--CCCEEEECCCCCCCcHH
Confidence 4567777888888999999999999999875311 2355554443 344445444 79999986 5555445
Q ss_pred H----HHHHHcCcCEEEEc
Q 015722 329 V----FKALALGASGVFVG 343 (402)
Q Consensus 329 v----~kal~lGAd~V~iG 343 (402)
+ .++..+|+.++.|-
T Consensus 92 v~~tV~~~~~aGvagi~IE 110 (290)
T TIGR02321 92 VHYVVPQYEAAGASAIVME 110 (290)
T ss_pred HHHHHHHHHHcCCeEEEEe
Confidence 5 34555899999884
No 457
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=90.79 E-value=1.1 Score=40.36 Aligned_cols=87 Identities=15% Similarity=0.145 Sum_probs=57.8
Q ss_pred HHHHHHHHccCccEEEEe----ccCHHH-HHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCC
Q 015722 249 KDVKWLQTITSLPILVKG----VLTAED-ASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGV 323 (402)
Q Consensus 249 ~~i~~lr~~~~~Pv~vK~----~~~~~d-a~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI 323 (402)
+.+...+++ +++.+-.. ....+- ...+.+.++|+|-+- .| -....+.++.+.. .+|||+-|=|
T Consensus 86 ~~i~~Akk~-~~~aIqR~FilDS~Al~~~~~~i~~~~pD~iEvL-------PG--v~Pkvi~~i~~~t--~~piIAGGLi 153 (181)
T COG1954 86 NVIKKAKKL-GILAIQRLFILDSIALEKGIKQIEKSEPDFIEVL-------PG--VMPKVIKEITEKT--HIPIIAGGLI 153 (181)
T ss_pred HHHHHHHHc-CCceeeeeeeecHHHHHHHHHHHHHcCCCEEEEc-------Cc--ccHHHHHHHHHhc--CCCEEecccc
Confidence 345555553 44444332 122333 455677899999882 11 2235667776666 7999999999
Q ss_pred CCHHHHHHHHHcCcCEEEEchHHH
Q 015722 324 RRGTDVFKALALGASGVFVGRPVP 347 (402)
Q Consensus 324 ~~g~dv~kal~lGAd~V~iGr~~l 347 (402)
++-+|+..||..||-+|.-..--+
T Consensus 154 ~t~Eev~~Al~aGA~avSTs~~~l 177 (181)
T COG1954 154 ETEEEVREALKAGAVAVSTSNTKL 177 (181)
T ss_pred ccHHHHHHHHHhCcEEEeecchhh
Confidence 999999999999999987554333
No 458
>PRK12346 transaldolase A; Provisional
Probab=90.72 E-value=2.7 Score=41.82 Aligned_cols=100 Identities=12% Similarity=0.154 Sum_probs=66.2
Q ss_pred cHHHHHHHHHc--cCccEEEEeccCHHHHHHHHHhCCcEEEEecCcccCCCC-------------CcchHHHHHHHHHHh
Q 015722 247 NWKDVKWLQTI--TSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDY-------------VPATVMALEEVVQAA 311 (402)
Q Consensus 247 ~~~~i~~lr~~--~~~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~~~d~-------------~~~~~~~l~~i~~~~ 311 (402)
+|+=++.++.. -++++-+=.+.+.+.+..|.++|++.|... -||-.|+ +-+.+..+.++.+..
T Consensus 135 T~eGi~A~~~L~~~GI~~n~TliFS~~Qa~~aa~AGa~~ISPf--VgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~ 212 (316)
T PRK12346 135 TWEGIRAAEELEKEGINCNLTLLFSFAQARACAEAGVFLISPF--VGRIYDWYQARKPMDPYVVEEDPGVKSVRNIYDYY 212 (316)
T ss_pred CHHHHHHHHHHHHCCCceeEEEecCHHHHHHHHHcCCCEEEec--ccHHHHhhhhccccccccccCCChHHHHHHHHHHH
Confidence 55544444332 267877778899999999999999988763 2332221 233445555555544
Q ss_pred ---cCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHHHhhh
Q 015722 312 ---KGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLA 351 (402)
Q Consensus 312 ---~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~~~~ 351 (402)
+.+..|++ ..+|+..++. ..+|||.+-|.-.++..+.
T Consensus 213 k~~~~~T~Vm~-ASfRn~~qi~--alaG~d~lTi~p~ll~~L~ 252 (316)
T PRK12346 213 KQHRYETIVMG-ASFRRTEQIL--ALAGCDRLTISPNLLKELQ 252 (316)
T ss_pred HHcCCCcEEEe-cccCCHHHHH--HHhCCCEEeCCHHHHHHHH
Confidence 22445555 4599999998 3469999999887776654
No 459
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=90.69 E-value=10 Score=35.62 Aligned_cols=44 Identities=18% Similarity=0.435 Sum_probs=39.2
Q ss_pred CCccHHHHHHHHHccCccEEEEeccCHHHHHHHHHhCCcEEEEe
Q 015722 244 RSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVS 287 (402)
Q Consensus 244 ~~~~~~~i~~lr~~~~~Pv~vK~~~~~~da~~a~~aGad~I~vs 287 (402)
+...++.++++++..++|++.=|..+.+.+..+.++|+|+|.+.
T Consensus 143 ~~~G~~~l~~~~~~~~iP~vAIGGi~~~nv~~v~~~Ga~gVAvv 186 (211)
T COG0352 143 PPLGLEGLREIRELVNIPVVAIGGINLENVPEVLEAGADGVAVV 186 (211)
T ss_pred CccCHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHHhCCCeEEeh
Confidence 34578889999998889999888899999999999999999884
No 460
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=90.68 E-value=1.3 Score=42.44 Aligned_cols=82 Identities=24% Similarity=0.305 Sum_probs=56.4
Q ss_pred CccEEEEeccCHHHHHHHHHhCCcEEEEecCccc----CCCCCcchHHHH----HHHHHHhcCCCeEEEecCCC--CHHH
Q 015722 259 SLPILVKGVLTAEDASLAIQYGAAGIIVSNHGAR----QLDYVPATVMAL----EEVVQAAKGRVPVFLDGGVR--RGTD 328 (402)
Q Consensus 259 ~~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~----~~d~~~~~~~~l----~~i~~~~~~~i~via~GGI~--~g~d 328 (402)
+.|+++-++-+.-.|+.+.++|+|+|.+++++.. ..|.+..+++.+ ..|.+.+ .+||++|+... +.++
T Consensus 8 ~~~i~~~~~~D~~sA~~~e~~G~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~--~~Pv~~D~~~G~g~~~~ 85 (243)
T cd00377 8 GGPLVLPGAWDALSARLAERAGFKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRIARAV--DLPVIADADTGYGNALN 85 (243)
T ss_pred CCcEEecCCCCHHHHHHHHHcCCCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHhhc--cCCEEEEcCCCCCCHHH
Confidence 4688888888888999999999999999876432 134455554433 3333333 79999998553 3334
Q ss_pred H----HHHHHcCcCEEEE
Q 015722 329 V----FKALALGASGVFV 342 (402)
Q Consensus 329 v----~kal~lGAd~V~i 342 (402)
+ .+.+..|+++|.|
T Consensus 86 ~~~~v~~~~~~G~~gv~i 103 (243)
T cd00377 86 VARTVRELEEAGAAGIHI 103 (243)
T ss_pred HHHHHHHHHHcCCEEEEE
Confidence 4 3445589999999
No 461
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=90.57 E-value=3 Score=41.49 Aligned_cols=100 Identities=11% Similarity=0.123 Sum_probs=66.5
Q ss_pred cHHHHHHHHHc--cCccEEEEeccCHHHHHHHHHhCCcEEEEecCcccCCCC-----C--------cchHHHHHHHHHHh
Q 015722 247 NWKDVKWLQTI--TSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDY-----V--------PATVMALEEVVQAA 311 (402)
Q Consensus 247 ~~~~i~~lr~~--~~~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~~~d~-----~--------~~~~~~l~~i~~~~ 311 (402)
+|+=++.++.. -++++-+=.+.+.+.+..|.++|++.|... -||-.|+ + .+.+..+.+|.+.+
T Consensus 134 T~eGi~A~~~L~~~GI~vN~TliFS~~Qa~aaa~AGa~~ISPF--VgRi~dw~~~~~g~~~~~~~~d~Gv~~v~~i~~~~ 211 (317)
T TIGR00874 134 TWEGIRAAEELEKEGIHCNLTLLFSFVQAIACAEAKVTLISPF--VGRILDWYKAATGKKEYSIEEDPGVASVKKIYNYY 211 (317)
T ss_pred CHHHHHHHHHHHHCCCceeeeeecCHHHHHHHHHcCCCEEEee--cchHhHhhhhccCccccccccCchHHHHHHHHHHH
Confidence 45444443332 278888778899999999999999988764 2332221 1 33455555555544
Q ss_pred ---cCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHHHhhh
Q 015722 312 ---KGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLA 351 (402)
Q Consensus 312 ---~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~~~~ 351 (402)
+.+..|++ ..+|+..++.+ .+|||.+-|.-.++..+.
T Consensus 212 k~~g~~T~Im~-ASfRn~~qv~~--laG~d~~Ti~p~ll~~L~ 251 (317)
T TIGR00874 212 KKHGYPTEVMG-ASFRNKEEILA--LAGCDRLTISPALLDELK 251 (317)
T ss_pred HHcCCCcEEEe-eccCCHHHHHH--HHCCCeEeCCHHHHHHHH
Confidence 23445554 56999999997 579999999877776554
No 462
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=90.57 E-value=2.7 Score=42.98 Aligned_cols=42 Identities=26% Similarity=0.384 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEch
Q 015722 300 TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGR 344 (402)
Q Consensus 300 ~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr 344 (402)
+|+.|..+++.. ++||++- ||.+.+|+.+++.+|+|+|.|..
T Consensus 241 tW~~i~~lr~~~--~~pvivK-gV~~~~dA~~a~~~G~d~I~vsn 282 (383)
T cd03332 241 TWEDLAFLREWT--DLPIVLK-GILHPDDARRAVEAGVDGVVVSN 282 (383)
T ss_pred CHHHHHHHHHhc--CCCEEEe-cCCCHHHHHHHHHCCCCEEEEcC
Confidence 567788888766 6898885 79999999999999999999874
No 463
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=90.49 E-value=11 Score=35.99 Aligned_cols=39 Identities=23% Similarity=0.207 Sum_probs=30.3
Q ss_pred HHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEec
Q 015722 271 EDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDG 321 (402)
Q Consensus 271 ~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~G 321 (402)
+.++...++|||.|.+-. + +.+.+.++.+.+ ++|+++.|
T Consensus 160 ~Ra~ay~~AGAd~i~~e~---------~-~~e~~~~i~~~~--~~P~~~~g 198 (240)
T cd06556 160 ADALAYAPAGADLIVMEC---------V-PVELAKQITEAL--AIPLAGIG 198 (240)
T ss_pred HHHHHHHHcCCCEEEEcC---------C-CHHHHHHHHHhC--CCCEEEEe
Confidence 346777899999999831 3 677888888877 78998866
No 464
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=90.45 E-value=4.8 Score=40.45 Aligned_cols=168 Identities=18% Similarity=0.272 Sum_probs=96.9
Q ss_pred cccccCcccchhhHHHhHHhhhcccccccccCCCCCCccceeecCcccCCceeecccccccccC--ChhhHHHHHHHHHc
Q 015722 57 YDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAH--PEGECATARAASAA 134 (402)
Q Consensus 57 ~~y~~gGa~~e~t~~~N~~~~~~~~l~pr~l~~~~~~d~st~i~G~~l~~Pi~iAPm~~~~~~~--~~ge~ala~aa~~~ 134 (402)
...+.++......++++...+....-+|.......... .|++...+.+ ..-+..+--.+..+
T Consensus 40 lG~ia~~~~~~e~l~~~i~~~~~~~~~p~~~~~f~~~~----------------~~v~~~~l~~~~~~~~~~~~~ii~~~ 103 (336)
T COG2070 40 LGIIASGGLPAEQLRAEIRKIRALTDKPFVANNFGSAP----------------APVNVNILVARRNAAEAGVDAIIEGA 103 (336)
T ss_pred ccccccccCCHHHHHHHHHHHHHhcCCcchhccccccc----------------ccchhheecccccchHHhhhhHHhcC
Confidence 34666666666677888877777777664422111110 2222222222 22234455556667
Q ss_pred CCeEEecCCccCCHHHHhhcCC-CceEEEEeecCChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCcc
Q 015722 135 GTIMTLSSWATSSVEEVSSTGP-GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHL 213 (402)
Q Consensus 135 G~~~~vs~~~~~s~eei~~~~~-~~~~~QLy~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~ 213 (402)
|++.+.+++...+-+.+..... +...+.... +.+..+++++.|.++++. ..+..| |
T Consensus 104 ~vpvv~~~~g~~~~~~i~~~~~~g~~v~~~v~------~~~~A~~~~~~G~d~vI~--~g~eAG--------G------- 160 (336)
T COG2070 104 GVPVVSTSFGAPPAEFVARLKAAGIKVIHSVI------TVREALKAERAGADAVIA--QGAEAG--------G------- 160 (336)
T ss_pred CCCEEeccCCCCcHHHHHHHHHcCCeEEEEeC------CHHHHHHHHhCCCCEEEe--cCCcCC--------C-------
Confidence 9999887765334444433211 223333221 245567888899999875 111110 0
Q ss_pred ccccccccccccCCCCCchhhHHHhhhhcCCCc-cHHHHHHHHHccC-ccEEEEe-ccCHHHHHHHHHhCCcEEEEe
Q 015722 214 TLKNYEGLYIGKMDKTDDSGLASYVANQIDRSL-NWKDVKWLQTITS-LPILVKG-VLTAEDASLAIQYGAAGIIVS 287 (402)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~i~~lr~~~~-~Pv~vK~-~~~~~da~~a~~aGad~I~vs 287 (402)
+... .++.+ +...+.++++.++ +||+.-| +.+.+++..+...|||+|.+.
T Consensus 161 -----------------------H~g~-~~~~~~t~~Lv~ev~~~~~~iPViAAGGI~dg~~i~AAlalGA~gVq~G 213 (336)
T COG2070 161 -----------------------HRGG-VDLEVSTFALVPEVVDAVDGIPVIAAGGIADGRGIAAALALGADGVQMG 213 (336)
T ss_pred -----------------------cCCC-CCCCccHHHHHHHHHHHhcCCCEEEecCccChHHHHHHHHhccHHHHhh
Confidence 0000 01222 3466889999888 8999865 689999999999999999884
No 465
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=90.22 E-value=12 Score=35.42 Aligned_cols=154 Identities=13% Similarity=0.192 Sum_probs=83.8
Q ss_pred ChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCCcc
Q 015722 168 HRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLN 247 (402)
Q Consensus 168 d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 247 (402)
+.+...++++...++|++.|.++...+. + .. + ...-.
T Consensus 17 s~e~~~~i~~~L~~~GV~~IEvg~~~~~---------------~-~~-------------------------p--~~~~~ 53 (265)
T cd03174 17 STEDKLEIAEALDEAGVDSIEVGSGASP---------------K-AV-------------------------P--QMEDD 53 (265)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeccCcCc---------------c-cc-------------------------c--cCCCH
Confidence 5677788889999999999987543221 0 00 0 00124
Q ss_pred HHHHHHHHHcc-CccEEEEeccC-HHHHHHHHHhCCcEEEEecCcccC-----CCCCc-chHHHHHHHHHHh-cCCCeEE
Q 015722 248 WKDVKWLQTIT-SLPILVKGVLT-AEDASLAIQYGAAGIIVSNHGARQ-----LDYVP-ATVMALEEVVQAA-KGRVPVF 318 (402)
Q Consensus 248 ~~~i~~lr~~~-~~Pv~vK~~~~-~~da~~a~~aGad~I~vsn~gg~~-----~d~~~-~~~~~l~~i~~~~-~~~i~vi 318 (402)
++.++.+++.. +.++. -.+.+ .++++.+.++|++.|.++..+-.. +..+. ..++.+.+..+.+ ...+++.
T Consensus 54 ~~~i~~l~~~~~~~~~~-~l~~~~~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~ 132 (265)
T cd03174 54 WEVLRAIRKLVPNVKLQ-ALVRNREKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVE 132 (265)
T ss_pred HHHHHHHHhccCCcEEE-EEccCchhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 67788888876 34432 33334 788999999999999997643210 00111 1223222222222 1234444
Q ss_pred Eec-CC----CCHHHHH----HHHHcCcCEEEEchHHHHhhhcCChHHHHHHHHHHHHHH
Q 015722 319 LDG-GV----RRGTDVF----KALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEF 369 (402)
Q Consensus 319 a~G-GI----~~g~dv~----kal~lGAd~V~iGr~~l~~~~~~G~~gv~~~i~~l~~el 369 (402)
.+- .+ .+.+++. ++..+|++.+.+.-.. + ..-++.+.++++.+++.+
T Consensus 133 ~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt~--G--~~~P~~v~~li~~l~~~~ 188 (265)
T cd03174 133 GSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKDTV--G--LATPEEVAELVKALREAL 188 (265)
T ss_pred EEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEechhc--C--CcCHHHHHHHHHHHHHhC
Confidence 433 33 3333333 3455899999887542 1 112455666665555443
No 466
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=90.19 E-value=2.9 Score=40.67 Aligned_cols=95 Identities=21% Similarity=0.351 Sum_probs=63.5
Q ss_pred HHHHHHHHHccCccEEEEec--cCHHH----HHHHHHhCCcEEEEecCcccCCCC-CcchHHHHHHHHHHhcCCCeEEEe
Q 015722 248 WKDVKWLQTITSLPILVKGV--LTAED----ASLAIQYGAAGIIVSNHGARQLDY-VPATVMALEEVVQAAKGRVPVFLD 320 (402)
Q Consensus 248 ~~~i~~lr~~~~~Pv~vK~~--~~~~d----a~~a~~aGad~I~vsn~gg~~~d~-~~~~~~~l~~i~~~~~~~i~via~ 320 (402)
.+.++++.+ ++.||.+|-. +++++ ++...+.|-..|++.-+|-+-.+. -...+..++.+++.. ..+|||+|
T Consensus 120 tdLL~a~~~-t~kpV~lKrGqf~s~~e~~~aae~i~~~Gn~~vilcERG~~fgy~~~~~D~~~ip~mk~~~-t~lPVi~D 197 (281)
T PRK12457 120 TDLVVAIAK-TGKPVNIKKPQFMSPTQMKHVVSKCREAGNDRVILCERGSSFGYDNLVVDMLGFRQMKRTT-GDLPVIFD 197 (281)
T ss_pred HHHHHHHhc-cCCeEEecCCCcCCHHHHHHHHHHHHHcCCCeEEEEeCCCCCCCCCcccchHHHHHHHhhC-CCCCEEEe
Confidence 355666655 6899999965 67776 677788899999997666441111 133455667666542 25899987
Q ss_pred ---------------cCCCCH--HHHHHHHHcCcCEEEEch
Q 015722 321 ---------------GGVRRG--TDVFKALALGASGVFVGR 344 (402)
Q Consensus 321 ---------------GGI~~g--~dv~kal~lGAd~V~iGr 344 (402)
||.|.- .-+..++++|||++++=.
T Consensus 198 pSHsvq~p~~~g~~s~G~re~v~~larAAvA~GaDGl~iEv 238 (281)
T PRK12457 198 VTHSLQCRDPLGAASGGRRRQVLDLARAGMAVGLAGLFLEA 238 (281)
T ss_pred CCccccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCEEEEEe
Confidence 444432 224467789999999986
No 467
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=90.08 E-value=2.2 Score=43.09 Aligned_cols=90 Identities=20% Similarity=0.313 Sum_probs=61.6
Q ss_pred cHHHHHHHHHcc-CccEEEEec------cCHHHHHHHHHhCCcEEEEec----CcccC--------CC------------
Q 015722 247 NWKDVKWLQTIT-SLPILVKGV------LTAEDASLAIQYGAAGIIVSN----HGARQ--------LD------------ 295 (402)
Q Consensus 247 ~~~~i~~lr~~~-~~Pv~vK~~------~~~~da~~a~~aGad~I~vsn----~gg~~--------~d------------ 295 (402)
+.|+|. +.. +.|.+++.- .+.+..++|.++|+.+|+++- .|.|. ..
T Consensus 114 s~Eei~---~~~~~~~~wfQlY~~~d~~~~~~ll~rA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~ 190 (351)
T cd04737 114 SLEEIA---KASNGGPKWFQLYMSKDDGFNRSLLDRAKAAGAKAIILTADATVGGNREADIRNKFQFPFGMPNLNHFSEG 190 (351)
T ss_pred CHHHHH---HhcCCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchHHHHhcCCCCcccchhhhhccc
Confidence 444444 333 456777754 234567889999999998852 12110 00
Q ss_pred --C------------CcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEE
Q 015722 296 --Y------------VPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFV 342 (402)
Q Consensus 296 --~------------~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~i 342 (402)
. ...+|+.|.++++.. ++||++= ||.+++|+.++..+|||+|.+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~--~~PvivK-gv~~~~dA~~a~~~G~d~I~v 248 (351)
T cd04737 191 TGKGKGISEIYAAAKQKLSPADIEFIAKIS--GLPVIVK-GIQSPEDADVAINAGADGIWV 248 (351)
T ss_pred cccCcchhhhhhhccCCCCHHHHHHHHHHh--CCcEEEe-cCCCHHHHHHHHHcCCCEEEE
Confidence 0 113567788888776 7899987 589999999999999999999
No 468
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=90.08 E-value=3.1 Score=42.31 Aligned_cols=83 Identities=23% Similarity=0.348 Sum_probs=58.7
Q ss_pred CccEEEEec------cCHHHHHHHHHhCCcEEEEec----CcccC---------------------------C------C
Q 015722 259 SLPILVKGV------LTAEDASLAIQYGAAGIIVSN----HGARQ---------------------------L------D 295 (402)
Q Consensus 259 ~~Pv~vK~~------~~~~da~~a~~aGad~I~vsn----~gg~~---------------------------~------d 295 (402)
+.|.+.-.- .+.+..++|.++|+.+|+++- .|.|. . .
T Consensus 132 ~~~~wfQlY~~~dr~~~~~li~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (367)
T TIGR02708 132 GTPHWFQFYMSKDDGINRDIMDRVKADGAKAIVLTADATVGGNREVDVRNGFVFPVGMPIVQEYLPTGAGKSMDNVYKSA 211 (367)
T ss_pred CCceEEEEeccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchhhhhcCCCCCCccchhhhhcccCCccchhhhcccc
Confidence 346555432 234668899999999999852 11110 0 0
Q ss_pred CCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEch
Q 015722 296 YVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGR 344 (402)
Q Consensus 296 ~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr 344 (402)
....+|+.|.++++.. ++||++= ||.+.+|+.++..+|+|+|.|+.
T Consensus 212 ~~~~~w~~i~~l~~~~--~~PvivK-Gv~~~eda~~a~~~Gvd~I~VS~ 257 (367)
T TIGR02708 212 KQKLSPRDIEEIAGYS--GLPVYVK-GPQCPEDADRALKAGASGIWVTN 257 (367)
T ss_pred CCCCCHHHHHHHHHhc--CCCEEEe-CCCCHHHHHHHHHcCcCEEEECC
Confidence 0123578888888876 7899976 69999999999999999998865
No 469
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=90.07 E-value=3.6 Score=37.76 Aligned_cols=89 Identities=22% Similarity=0.138 Sum_probs=55.2
Q ss_pred cHHHHHHHHHcc-CccEEEEe-ccCHH--HHHHHHHhCCcEEEEecCcccCCCCCcch-HHHHHHHHHHhcCCCeEEEe-
Q 015722 247 NWKDVKWLQTIT-SLPILVKG-VLTAE--DASLAIQYGAAGIIVSNHGARQLDYVPAT-VMALEEVVQAAKGRVPVFLD- 320 (402)
Q Consensus 247 ~~~~i~~lr~~~-~~Pv~vK~-~~~~~--da~~a~~aGad~I~vsn~gg~~~d~~~~~-~~~l~~i~~~~~~~i~via~- 320 (402)
..+.++.+|+.. +.++++-. ++++. +++.+.++|+|.|++ |+-. +... .+.+..+++ . .++++++
T Consensus 39 g~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Gad~i~v--h~~~----~~~~~~~~i~~~~~-~--g~~~~~~~ 109 (206)
T TIGR03128 39 GIEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGADIVTV--LGVA----DDATIKGAVKAAKK-H--GKEVQVDL 109 (206)
T ss_pred CHHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCCCEEEE--eccC----CHHHHHHHHHHHHH-c--CCEEEEEe
Confidence 356788888874 33444322 23443 689999999999998 4321 1112 233333332 2 6788775
Q ss_pred cCCCCH-HHHHHHHHcCcCEEEEch
Q 015722 321 GGVRRG-TDVFKALALGASGVFVGR 344 (402)
Q Consensus 321 GGI~~g-~dv~kal~lGAd~V~iGr 344 (402)
-+..+. +++..+..+|+|.|.+..
T Consensus 110 ~~~~t~~~~~~~~~~~g~d~v~~~p 134 (206)
T TIGR03128 110 INVKDKVKRAKELKELGADYIGVHT 134 (206)
T ss_pred cCCCChHHHHHHHHHcCCCEEEEcC
Confidence 355554 677778889999998864
No 470
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=89.91 E-value=0.66 Score=43.73 Aligned_cols=42 Identities=26% Similarity=0.389 Sum_probs=36.9
Q ss_pred cHHHHHHHHHcc-CccEEEEe-ccCHHHHHHHHHhCCcEEEEec
Q 015722 247 NWKDVKWLQTIT-SLPILVKG-VLTAEDASLAIQYGAAGIIVSN 288 (402)
Q Consensus 247 ~~~~i~~lr~~~-~~Pv~vK~-~~~~~da~~a~~aGad~I~vsn 288 (402)
..+.++.+++.+ +.|+++.+ +.++++++.+.++|||.|++.+
T Consensus 162 ~~e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs 205 (219)
T cd02812 162 PPEVVRAVKKVLGDTPLIVGGGIRSGEQAKEMAEAGADTIVVGN 205 (219)
T ss_pred CHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcCCCEEEECc
Confidence 457789999988 89999985 5899999999999999999965
No 471
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=89.85 E-value=0.7 Score=43.65 Aligned_cols=42 Identities=21% Similarity=0.238 Sum_probs=37.2
Q ss_pred cHHHHHHHHHcc-CccEEEEe-ccCHHHHHHHHHhCCcEEEEec
Q 015722 247 NWKDVKWLQTIT-SLPILVKG-VLTAEDASLAIQYGAAGIIVSN 288 (402)
Q Consensus 247 ~~~~i~~lr~~~-~~Pv~vK~-~~~~~da~~a~~aGad~I~vsn 288 (402)
..+.++.+++.+ +.|+++.+ +.+.++++.+.++|||+|++.+
T Consensus 166 ~~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs 209 (223)
T TIGR01768 166 PPELVAEVKKVLDKARLFVGGGIRSVEKAREMAEAGADTIVTGN 209 (223)
T ss_pred CHHHHHHHHHHcCCCCEEEecCCCCHHHHHHHHHcCCCEEEECc
Confidence 468899999988 89998875 6899999999999999999965
No 472
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=89.79 E-value=3.3 Score=41.62 Aligned_cols=69 Identities=16% Similarity=0.166 Sum_probs=54.7
Q ss_pred CChhHHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCCc
Q 015722 167 KHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSL 246 (402)
Q Consensus 167 ~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 246 (402)
.|.+.+.+.+++.+++||+-+-+++... .
T Consensus 39 ~Dv~atv~Qi~~L~~aGceiVRvav~~~---------------------------------------------------~ 67 (360)
T PRK00366 39 ADVEATVAQIKRLARAGCEIVRVAVPDM---------------------------------------------------E 67 (360)
T ss_pred hhHHHHHHHHHHHHHcCCCEEEEccCCH---------------------------------------------------H
Confidence 4566777788889999999887654210 0
Q ss_pred cHHHHHHHHHccCccEEEEeccCHHHHHHHHHhCCcEEEE
Q 015722 247 NWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIV 286 (402)
Q Consensus 247 ~~~~i~~lr~~~~~Pv~vK~~~~~~da~~a~~aGad~I~v 286 (402)
.-+.++++++..++|++.=+-.++.-|..+.++|+|.|-+
T Consensus 68 ~a~al~~I~~~~~iPlvADIHFd~~lAl~a~~~G~~~iRI 107 (360)
T PRK00366 68 AAAALPEIKKQLPVPLVADIHFDYRLALAAAEAGADALRI 107 (360)
T ss_pred HHHhHHHHHHcCCCCEEEecCCCHHHHHHHHHhCCCEEEE
Confidence 2255788999999999987778999999999999999988
No 473
>TIGR03586 PseI pseudaminic acid synthase.
Probab=89.70 E-value=7.5 Score=38.92 Aligned_cols=82 Identities=9% Similarity=0.177 Sum_probs=60.1
Q ss_pred HHHHHHHccCccEEEEeccCHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHH
Q 015722 250 DVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDV 329 (402)
Q Consensus 250 ~i~~lr~~~~~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv 329 (402)
.+...++..+++++ =...+.+.+..+.+.|++.+.+.. +-...+..|..+.+. ..|||.+-|..|-+++
T Consensus 81 ~L~~~~~~~Gi~~~-stpfd~~svd~l~~~~v~~~KI~S-------~~~~n~~LL~~va~~---gkPvilstG~~t~~Ei 149 (327)
T TIGR03586 81 ELFERAKELGLTIF-SSPFDETAVDFLESLDVPAYKIAS-------FEITDLPLIRYVAKT---GKPIIMSTGIATLEEI 149 (327)
T ss_pred HHHHHHHHhCCcEE-EccCCHHHHHHHHHcCCCEEEECC-------ccccCHHHHHHHHhc---CCcEEEECCCCCHHHH
Confidence 35555666788775 355778889999999999999943 123456777776653 6899999999999999
Q ss_pred HHHHH----cCcCEEEE
Q 015722 330 FKALA----LGASGVFV 342 (402)
Q Consensus 330 ~kal~----lGAd~V~i 342 (402)
..|+. .|..-|.+
T Consensus 150 ~~Av~~i~~~g~~~i~L 166 (327)
T TIGR03586 150 QEAVEACREAGCKDLVL 166 (327)
T ss_pred HHHHHHHHHCCCCcEEE
Confidence 88775 47644444
No 474
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=89.64 E-value=3.6 Score=39.73 Aligned_cols=71 Identities=20% Similarity=0.189 Sum_probs=54.8
Q ss_pred HHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHH
Q 015722 270 AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPV 346 (402)
Q Consensus 270 ~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~ 346 (402)
.+.|+...++||++|.+..... .-...++.|..+++.+ ++||+.--=|....++..+..+|||+|.+.-..
T Consensus 73 ~~~A~~~~~~GA~aisvlte~~----~f~g~~~~l~~v~~~v--~iPvl~kdfi~~~~qi~~a~~~GAD~VlLi~~~ 143 (260)
T PRK00278 73 VEIAKAYEAGGAACLSVLTDER----FFQGSLEYLRAARAAV--SLPVLRKDFIIDPYQIYEARAAGADAILLIVAA 143 (260)
T ss_pred HHHHHHHHhCCCeEEEEecccc----cCCCCHHHHHHHHHhc--CCCEEeeeecCCHHHHHHHHHcCCCEEEEEecc
Confidence 4568888999999998854211 1112367888888877 799998777888999999999999999887644
No 475
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=89.61 E-value=4.7 Score=40.72 Aligned_cols=46 Identities=24% Similarity=0.413 Sum_probs=35.6
Q ss_pred CCccHHHHHHHHHccCccEEEEec-------cCHHHHHHHHHhCCcEEEEecC
Q 015722 244 RSLNWKDVKWLQTITSLPILVKGV-------LTAEDASLAIQYGAAGIIVSNH 289 (402)
Q Consensus 244 ~~~~~~~i~~lr~~~~~Pv~vK~~-------~~~~da~~a~~aGad~I~vsn~ 289 (402)
..+++..+..+++.+++||++=-. ..+..+..|..+|||++++--|
T Consensus 256 ~~~dl~ai~~lk~~~~lPVi~DpsH~~G~sd~~~~~a~AAva~GAdGliIE~H 308 (352)
T PRK13396 256 NTLDLSVIPVLRSLTHLPIMIDPSHGTGKSEYVPSMAMAAIAAGTDSLMIEVH 308 (352)
T ss_pred CCcCHHHHHHHHHhhCCCEEECCcccCCcHHHHHHHHHHHHhhCCCeEEEEec
Confidence 346788899999999999977532 2345688899999998888656
No 476
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=89.53 E-value=4.8 Score=40.40 Aligned_cols=41 Identities=22% Similarity=0.211 Sum_probs=35.3
Q ss_pred ccHHHHHHHHHccCccEEEEeccCHHHHHHHHHhC-CcEEEE
Q 015722 246 LNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYG-AAGIIV 286 (402)
Q Consensus 246 ~~~~~i~~lr~~~~~Pv~vK~~~~~~da~~a~~aG-ad~I~v 286 (402)
+.++..+.+|+.+++||++-|..++++++.+++.| +|.|.+
T Consensus 272 ~~~~~~~~ik~~~~ipvi~~G~i~~~~a~~~l~~g~~D~V~~ 313 (338)
T cd02933 272 QPPDFLDFLRKAFKGPLIAAGGYDAESAEAALADGKADLVAF 313 (338)
T ss_pred cchHHHHHHHHHcCCCEEEECCCCHHHHHHHHHcCCCCEEEe
Confidence 45678899999999999998776799999999876 999987
No 477
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=89.36 E-value=18 Score=33.64 Aligned_cols=88 Identities=23% Similarity=0.240 Sum_probs=53.7
Q ss_pred HHHHHHHHHccCccEEEEec--cCHHHHHHHH--HhCCcEEEEecC----cccCCCCCcchHHHHHHHHHHhcCCCeEEE
Q 015722 248 WKDVKWLQTITSLPILVKGV--LTAEDASLAI--QYGAAGIIVSNH----GARQLDYVPATVMALEEVVQAAKGRVPVFL 319 (402)
Q Consensus 248 ~~~i~~lr~~~~~Pv~vK~~--~~~~da~~a~--~aGad~I~vsn~----gg~~~d~~~~~~~~l~~i~~~~~~~i~via 319 (402)
.+.++.+++..+++++ |-+ ...++...+. ...+|++.+... ||+ +-.-.|+.+. +.+ ..|++.
T Consensus 89 ~~~~~~l~~~~~~~ii-k~i~v~~~~~l~~~~~~~~~~d~~L~Ds~~~~~GGt---G~~~dw~~l~---~~~--~~p~~L 159 (210)
T PRK01222 89 PEFCRQLKRRYGLPVI-KALRVRSAGDLEAAAAYYGDADGLLLDAYVGLPGGT---GKTFDWSLLP---AGL--AKPWIL 159 (210)
T ss_pred HHHHHHHHhhcCCcEE-EEEecCCHHHHHHHHhhhccCCEEEEcCCCCCCCCC---CCccchHHhh---hcc--CCCEEE
Confidence 3456777776666764 433 2333333332 236899888753 332 1122455552 122 469999
Q ss_pred ecCCCCHHHHHHHHH-cCcCEEEEchH
Q 015722 320 DGGVRRGTDVFKALA-LGASGVFVGRP 345 (402)
Q Consensus 320 ~GGI~~g~dv~kal~-lGAd~V~iGr~ 345 (402)
.|||. ++.+.+++. .+..+|=+-+-
T Consensus 160 AGGi~-peNv~~ai~~~~p~gvDvsSg 185 (210)
T PRK01222 160 AGGLN-PDNVAEAIRQVRPYGVDVSSG 185 (210)
T ss_pred ECCCC-HHHHHHHHHhcCCCEEEecCc
Confidence 99997 899999998 48888877663
No 478
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=89.27 E-value=13 Score=33.03 Aligned_cols=42 Identities=24% Similarity=0.438 Sum_probs=36.3
Q ss_pred ccHHHHHHHHHccCccEEEEeccCHHHHHHHHHhCCcEEEEe
Q 015722 246 LNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVS 287 (402)
Q Consensus 246 ~~~~~i~~lr~~~~~Pv~vK~~~~~~da~~a~~aGad~I~vs 287 (402)
..++.++++++..+.|+++-|..+.+++..+.++|+|+|.++
T Consensus 137 ~~~~~~~~~~~~~~~pv~a~GGi~~~~i~~~~~~Ga~~i~~g 178 (196)
T cd00564 137 LGLELLREIAELVEIPVVAIGGITPENAAEVLAAGADGVAVI 178 (196)
T ss_pred CCHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHcCCCEEEEe
Confidence 467888888887889999887778899999999999999884
No 479
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=89.17 E-value=3.3 Score=42.43 Aligned_cols=99 Identities=14% Similarity=0.132 Sum_probs=65.2
Q ss_pred cHHHHHHHHHc--cCccEEEEeccCHHHHHHHHHhCCcEEEEecCcccCCC-----C--------CcchHHHHHHHHHHh
Q 015722 247 NWKDVKWLQTI--TSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLD-----Y--------VPATVMALEEVVQAA 311 (402)
Q Consensus 247 ~~~~i~~lr~~--~~~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~~~d-----~--------~~~~~~~l~~i~~~~ 311 (402)
+|+=++.++.. -++++-+=.+.+.+.|..|.++|++.|... -||-.| . .-|.+..+.+|.+..
T Consensus 140 T~eGi~A~~~L~~~GI~~n~TlvFS~~QA~aaaeAGa~~ISPf--VgRi~dw~~~~~g~~~~~~~~dpGv~~v~~i~~~~ 217 (391)
T PRK12309 140 TWEGIKAAEVLEKEGIHCNLTLLFGFHQAIACAEAGVTLISPF--VGRILDWYKKETGRDSYPGAEDPGVQSVTQIYNYY 217 (391)
T ss_pred CHHHHHHHHHHHHCCCceeeeeecCHHHHHHHHHcCCCEEEee--cchhhhhhhhccCCCccccccchHHHHHHHHHHHH
Confidence 45444444332 267877777899999999999999988764 233222 1 112445566665544
Q ss_pred c---CCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHHHhh
Q 015722 312 K---GRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSL 350 (402)
Q Consensus 312 ~---~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~~~ 350 (402)
. .+..|++. .+|+..++.+ .+|||.+-|.-.++..+
T Consensus 218 ~~~~~~T~Im~A-SfRn~~~v~~--laG~d~~Ti~p~ll~~L 256 (391)
T PRK12309 218 KKFGYKTEVMGA-SFRNIGEIIE--LAGCDLLTISPKLLEQL 256 (391)
T ss_pred HhcCCCcEEEec-ccCCHHHHHH--HHCCCeeeCCHHHHHHH
Confidence 2 24555554 5999999998 48999998887666544
No 480
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=89.17 E-value=24 Score=34.75 Aligned_cols=179 Identities=16% Similarity=0.087 Sum_probs=96.8
Q ss_pred hHHHHHHHHHcCCeEE-ecCC--c----------cCCHHHHh-------hcCCCceEEEEee-cCChhHHHHHHHHHHHc
Q 015722 124 ECATARAASAAGTIMT-LSSW--A----------TSSVEEVS-------STGPGIRFFQLYV-TKHRNVDAQLVKRAERA 182 (402)
Q Consensus 124 e~ala~aa~~~G~~~~-vs~~--~----------~~s~eei~-------~~~~~~~~~QLy~-~~d~~~~~~~l~ra~~~ 182 (402)
|...|+.+.++|...+ +|+. + ..+++|+. +..+-|..+-+=- +.+...+.+.+++.+++
T Consensus 26 Da~SAri~e~~Gf~ai~~Sg~~~a~~~lG~PD~g~l~~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~r~V~~~~~a 105 (292)
T PRK11320 26 NAYHALLAERAGFKAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDACDLPLLVDIDTGFGGAFNIARTVKSMIKA 105 (292)
T ss_pred CHHHHHHHHHcCCCEEEeCHHHHHhHhcCCCCCCCCCHHHHHHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHHHHHHc
Confidence 4467888999887655 3332 1 11344432 2232344433311 24777788889999999
Q ss_pred CCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCCccHHHHHHHHHcc-Ccc
Q 015722 183 GFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTIT-SLP 261 (402)
Q Consensus 183 G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~-~~P 261 (402)
|+.+|.|. |. +..+| .++ .+. ...+ +...-.+.|+..++.- +.+
T Consensus 106 Gaagi~IE-Dq-~~pK~-----cg~-~~~-----------------------~~lv----~~ee~~~kI~Aa~~a~~~~d 150 (292)
T PRK11320 106 GAAAVHIE-DQ-VGAKR-----CGH-RPN-----------------------KEIV----SQEEMVDRIKAAVDARTDPD 150 (292)
T ss_pred CCeEEEEe-cC-CCccc-----cCC-CCC-----------------------Cccc----CHHHHHHHHHHHHHhccCCC
Confidence 99888663 22 11111 110 000 0000 1111123455555433 334
Q ss_pred EEEEec------cCHHH----HHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEE---EecCCCCH-H
Q 015722 262 ILVKGV------LTAED----ASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVF---LDGGVRRG-T 327 (402)
Q Consensus 262 v~vK~~------~~~~d----a~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~vi---a~GGI~~g-~ 327 (402)
+++=-. ...++ ++.-.++|||.|.+ +| +.+.+.+.++.+.+ +.|++ ..+|- ++ .
T Consensus 151 ~~IiARTDa~~~~g~deAI~Ra~aY~eAGAD~ifi--~~-------~~~~~~i~~~~~~~--~~Pl~~n~~~~~~-~p~~ 218 (292)
T PRK11320 151 FVIMARTDALAVEGLDAAIERAQAYVEAGADMIFP--EA-------MTELEMYRRFADAV--KVPILANITEFGA-TPLF 218 (292)
T ss_pred eEEEEecCcccccCHHHHHHHHHHHHHcCCCEEEe--cC-------CCCHHHHHHHHHhc--CCCEEEEeccCCC-CCCC
Confidence 444221 12344 45667999999998 33 45678888888877 56773 33442 22 2
Q ss_pred HHHHHHHcCcCEEEEchHHHHh
Q 015722 328 DVFKALALGASGVFVGRPVPFS 349 (402)
Q Consensus 328 dv~kal~lGAd~V~iGr~~l~~ 349 (402)
.+.+.-.+|.+.|..|...+++
T Consensus 219 s~~~L~~lGv~~v~~~~~~~~a 240 (292)
T PRK11320 219 TTEELASAGVAMVLYPLSAFRA 240 (292)
T ss_pred CHHHHHHcCCcEEEEChHHHHH
Confidence 3455556899999999877664
No 481
>PRK05269 transaldolase B; Provisional
Probab=89.10 E-value=4 Score=40.69 Aligned_cols=100 Identities=13% Similarity=0.172 Sum_probs=67.6
Q ss_pred cHHHHHHHHHcc--CccEEEEeccCHHHHHHHHHhCCcEEEEecCcccCCCC-------------CcchHHHHHHHHHHh
Q 015722 247 NWKDVKWLQTIT--SLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDY-------------VPATVMALEEVVQAA 311 (402)
Q Consensus 247 ~~~~i~~lr~~~--~~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~~~d~-------------~~~~~~~l~~i~~~~ 311 (402)
+|+=++.++... ++++-+=.+.+.+.+..|.++|++.|... -||-.|+ +.+.+..+.++.+..
T Consensus 136 T~eGi~A~~~L~~~GI~vn~TlvFs~~Qa~~aa~AGa~~ISPf--VgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~ 213 (318)
T PRK05269 136 TWEGIRAAEQLEKEGINCNLTLLFSFAQARACAEAGVFLISPF--VGRILDWYKKNTGKKEYAPAEDPGVVSVTKIYNYY 213 (318)
T ss_pred CHHHHHHHHHHHHcCCceeEeEecCHHHHHHHHHcCCCEEEee--ccHHHHHhhhcccccccCcCCCcHHHHHHHHHHHH
Confidence 454444443322 67777778899999999999999988764 2332111 334555566665544
Q ss_pred ---cCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHHHhhh
Q 015722 312 ---KGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLA 351 (402)
Q Consensus 312 ---~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l~~~~ 351 (402)
+.+..|++. .+|+..++.+ .+|||.|-|.-.++..+.
T Consensus 214 k~~~~~t~im~A-Sfrn~~~v~~--laG~d~vTi~p~ll~~l~ 253 (318)
T PRK05269 214 KKHGYKTVVMGA-SFRNTGQILE--LAGCDRLTISPALLEELA 253 (318)
T ss_pred HHcCCCceEEee-ccCCHHHHHH--HhCCCeEECCHHHHHHHH
Confidence 235566664 6999999997 669999988877776654
No 482
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=89.03 E-value=4.6 Score=40.57 Aligned_cols=41 Identities=17% Similarity=0.208 Sum_probs=34.7
Q ss_pred ccHHHHHHHHHccCccEEEEe-ccCHHHHHHHHHhC-CcEEEE
Q 015722 246 LNWKDVKWLQTITSLPILVKG-VLTAEDASLAIQYG-AAGIIV 286 (402)
Q Consensus 246 ~~~~~i~~lr~~~~~Pv~vK~-~~~~~da~~a~~aG-ad~I~v 286 (402)
+.|+.++.+++.+++||++-| +.++++++.+++.| +|+|.+
T Consensus 272 ~~~~~~~~ik~~~~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~ 314 (343)
T cd04734 272 PFLPLAARIKQAVDLPVFHAGRIRDPAEAEQALAAGHADMVGM 314 (343)
T ss_pred hhHHHHHHHHHHcCCCEEeeCCCCCHHHHHHHHHcCCCCeeee
Confidence 457888999999999999876 57899999998765 999987
No 483
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=88.84 E-value=17 Score=35.10 Aligned_cols=45 Identities=33% Similarity=0.425 Sum_probs=34.0
Q ss_pred CccHHHHHHHHHccCccEEE-Eec-cC-----HHHHHHHHHhCCcEEEEecC
Q 015722 245 SLNWKDVKWLQTITSLPILV-KGV-LT-----AEDASLAIQYGAAGIIVSNH 289 (402)
Q Consensus 245 ~~~~~~i~~lr~~~~~Pv~v-K~~-~~-----~~da~~a~~aGad~I~vsn~ 289 (402)
..++..+..+++.++.||++ -.- .. ...+..|..+|+|+|++--|
T Consensus 180 ~~dl~~i~~lk~~~~~pV~~ds~Hs~G~r~~~~~~~~aAva~Ga~gl~iE~H 231 (260)
T TIGR01361 180 TLDLSAVPVLKKETHLPIIVDPSHAAGRRDLVIPLAKAAIAAGADGLMIEVH 231 (260)
T ss_pred CcCHHHHHHHHHhhCCCEEEcCCCCCCccchHHHHHHHHHHcCCCEEEEEeC
Confidence 35778899999988999987 321 11 45678899999999887656
No 484
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=88.54 E-value=1.8 Score=44.20 Aligned_cols=66 Identities=18% Similarity=0.265 Sum_probs=51.5
Q ss_pred HHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEc
Q 015722 272 DASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVG 343 (402)
Q Consensus 272 da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iG 343 (402)
....+.++|+|.|++...-|. ..-.++.++.|++..+ +++||+ |.+-|.+++...+++|||++=||
T Consensus 255 rl~ll~~aGvdvviLDSSqGn----S~~qiemik~iK~~yP-~l~Via-GNVVT~~qa~nLI~aGaDgLrVG 320 (503)
T KOG2550|consen 255 RLDLLVQAGVDVVILDSSQGN----SIYQLEMIKYIKETYP-DLQIIA-GNVVTKEQAANLIAAGADGLRVG 320 (503)
T ss_pred HHHHhhhcCCcEEEEecCCCc----chhHHHHHHHHHhhCC-Cceeec-cceeeHHHHHHHHHccCceeEec
Confidence 356788999999999754331 2345678888888764 788887 88999999999999999996555
No 485
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=88.48 E-value=8.1 Score=39.65 Aligned_cols=89 Identities=17% Similarity=0.177 Sum_probs=59.0
Q ss_pred cHHHHHHHHHc-cCccEEE--EeccCHHH-HHHHHHhCCcEEEEecCcccCCCCCcchHH-HHHHHHHHhcCCCeEEE-e
Q 015722 247 NWKDVKWLQTI-TSLPILV--KGVLTAED-ASLAIQYGAAGIIVSNHGARQLDYVPATVM-ALEEVVQAAKGRVPVFL-D 320 (402)
Q Consensus 247 ~~~~i~~lr~~-~~~Pv~v--K~~~~~~d-a~~a~~aGad~I~vsn~gg~~~d~~~~~~~-~l~~i~~~~~~~i~via-~ 320 (402)
..+.++++++. .+.|+.+ |....++. ++.+.++|+|.++++..++ ..++. .+..+++ . .+.+.+ .
T Consensus 213 G~~iVk~Lr~~~~~~~I~~DLK~~Di~~~vv~~~a~aGAD~vTVH~ea~------~~ti~~ai~~akk-~--GikvgVD~ 283 (391)
T PRK13307 213 GLEVISKIREVRPDAFIVADLKTLDTGNLEARMAADATADAVVISGLAP------ISTIEKAIHEAQK-T--GIYSILDM 283 (391)
T ss_pred CHHHHHHHHHhCCCCeEEEEecccChhhHHHHHHHhcCCCEEEEeccCC------HHHHHHHHHHHHH-c--CCEEEEEE
Confidence 35778899887 4667765 33333343 7788999999999943221 22232 2333332 2 455666 4
Q ss_pred cCCCCHHHHHHHHHcCcCEEEEch
Q 015722 321 GGVRRGTDVFKALALGASGVFVGR 344 (402)
Q Consensus 321 GGI~~g~dv~kal~lGAd~V~iGr 344 (402)
=+..++.+.++.+..|.|.|.+.+
T Consensus 284 lnp~tp~e~i~~l~~~vD~Vllht 307 (391)
T PRK13307 284 LNVEDPVKLLESLKVKPDVVELHR 307 (391)
T ss_pred cCCCCHHHHHHHhhCCCCEEEEcc
Confidence 567788899998889999999987
No 486
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=88.42 E-value=5.7 Score=37.26 Aligned_cols=91 Identities=26% Similarity=0.239 Sum_probs=63.0
Q ss_pred cHHHHHHHHHccCccEEEEeccC----HHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEec-
Q 015722 247 NWKDVKWLQTITSLPILVKGVLT----AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDG- 321 (402)
Q Consensus 247 ~~~~i~~lr~~~~~Pv~vK~~~~----~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~G- 321 (402)
..+-|+.+|+.++-.++|-..-+ .-+++.+.++|||.++|++.. -.+++....+..+.+ ++.+.++=
T Consensus 43 G~~aV~~lr~~~pd~~IvAD~Kt~D~G~~e~~ma~~aGAd~~tV~g~A------~~~TI~~~i~~A~~~--~~~v~iDl~ 114 (217)
T COG0269 43 GMRAVRALRELFPDKIIVADLKTADAGAIEARMAFEAGADWVTVLGAA------DDATIKKAIKVAKEY--GKEVQIDLI 114 (217)
T ss_pred hHHHHHHHHHHCCCCeEEeeeeecchhHHHHHHHHHcCCCEEEEEecC------CHHHHHHHHHHHHHc--CCeEEEEee
Confidence 34679999999865566544322 246899999999999997631 133443333333333 45555554
Q ss_pred CCCCHHHHHHHHH-cCcCEEEEchH
Q 015722 322 GVRRGTDVFKALA-LGASGVFVGRP 345 (402)
Q Consensus 322 GI~~g~dv~kal~-lGAd~V~iGr~ 345 (402)
|..++++..+-+. +|.+.+.+=|.
T Consensus 115 ~~~~~~~~~~~l~~~gvd~~~~H~g 139 (217)
T COG0269 115 GVWDPEQRAKWLKELGVDQVILHRG 139 (217)
T ss_pred cCCCHHHHHHHHHHhCCCEEEEEec
Confidence 7999999999999 99999988774
No 487
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=88.41 E-value=3.4 Score=39.53 Aligned_cols=74 Identities=12% Similarity=0.151 Sum_probs=44.9
Q ss_pred HHHHHHHccCccEEEEeccCHHHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHH
Q 015722 250 DVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDV 329 (402)
Q Consensus 250 ~i~~lr~~~~~Pv~vK~~~~~~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv 329 (402)
.+....+..++.++ =...+.+.+..+.+.|++++.|.. +-...+..|..+++ .+.|||.+-|..+-+++
T Consensus 60 ~L~~~~~~~gi~f~-stpfd~~s~d~l~~~~~~~~KIaS-------~dl~n~~lL~~~A~---tgkPvIlSTG~stl~EI 128 (241)
T PF03102_consen 60 ELFEYCKELGIDFF-STPFDEESVDFLEELGVPAYKIAS-------GDLTNLPLLEYIAK---TGKPVILSTGMSTLEEI 128 (241)
T ss_dssp HHHHHHHHTT-EEE-EEE-SHHHHHHHHHHT-SEEEE-G-------GGTT-HHHHHHHHT---T-S-EEEE-TT--HHHH
T ss_pred HHHHHHHHcCCEEE-ECCCCHHHHHHHHHcCCCEEEecc-------ccccCHHHHHHHHH---hCCcEEEECCCCCHHHH
Confidence 34333344455443 344678899999999999999943 12345666776664 37999999999999999
Q ss_pred HHHHH
Q 015722 330 FKALA 334 (402)
Q Consensus 330 ~kal~ 334 (402)
.+|+.
T Consensus 129 ~~Av~ 133 (241)
T PF03102_consen 129 ERAVE 133 (241)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88876
No 488
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=88.40 E-value=26 Score=34.21 Aligned_cols=180 Identities=14% Similarity=0.050 Sum_probs=101.6
Q ss_pred CceeecccccccccCChhhHHHHHHHHHcC-CeEEe--c---CCccCCHHHHhh-------cCC--CceEEEEeecCChh
Q 015722 106 MPIMIAPTAFQKMAHPEGECATARAASAAG-TIMTL--S---SWATSSVEEVSS-------TGP--GIRFFQLYVTKHRN 170 (402)
Q Consensus 106 ~Pi~iAPm~~~~~~~~~ge~ala~aa~~~G-~~~~v--s---~~~~~s~eei~~-------~~~--~~~~~QLy~~~d~~ 170 (402)
.|.++.|+.-.+-.+.++-..+.+...+.| +...+ + ++.+.+.||..+ ... -+..+++. ..+.+
T Consensus 5 ~~~~~TPf~~dg~iD~~~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~-~~~t~ 83 (290)
T TIGR00683 5 FSALLVSFNEDGTINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVG-SVNLK 83 (290)
T ss_pred EeeeecCCCCCCCcCHHHHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecC-CCCHH
Confidence 456677775444455555567777788888 64433 2 234567776322 222 24566664 34667
Q ss_pred HHHHHHHHHHHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCCccHHH
Q 015722 171 VDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKD 250 (402)
Q Consensus 171 ~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 250 (402)
...++++.++++|++++.+. .|.+ .+. + .+-..+.
T Consensus 84 ~~i~la~~a~~~Gad~v~v~--~P~y------------~~~--~-----------------------------~~~i~~y 118 (290)
T TIGR00683 84 EAVELGKYATELGYDCLSAV--TPFY------------YKF--S-----------------------------FPEIKHY 118 (290)
T ss_pred HHHHHHHHHHHhCCCEEEEe--CCcC------------CCC--C-----------------------------HHHHHHH
Confidence 77889999999999999873 2321 000 0 0001233
Q ss_pred HHHHHHcc-CccEEEEec-------cCHHHHHHHHHhC-CcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEec
Q 015722 251 VKWLQTIT-SLPILVKGV-------LTAEDASLAIQYG-AAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDG 321 (402)
Q Consensus 251 i~~lr~~~-~~Pv~vK~~-------~~~~da~~a~~aG-ad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~G 321 (402)
.+.+.+.+ ++|+++=.. .+++..+++.+.. +-+|.-+. ..+..+.++.+..+ +..| .+|
T Consensus 119 f~~v~~~~~~lpv~lYn~P~~tg~~l~~~~i~~L~~~pnv~giK~s~----------~d~~~~~~~~~~~~-~~~v-~~G 186 (290)
T TIGR00683 119 YDTIIAETGGLNMIVYSIPFLTGVNMGIEQFGELYKNPKVLGVKFTA----------GDFYLLERLKKAYP-NHLI-WAG 186 (290)
T ss_pred HHHHHhhCCCCCEEEEeCccccccCcCHHHHHHHhcCCCEEEEEeCC----------CCHHHHHHHHHhCC-CCEE-EEC
Confidence 44554445 578776432 4667777766532 22222221 12344555554443 4544 344
Q ss_pred CCCCHHHHHHHHHcCcCEEEEchHH
Q 015722 322 GVRRGTDVFKALALGASGVFVGRPV 346 (402)
Q Consensus 322 GI~~g~dv~kal~lGAd~V~iGr~~ 346 (402)
. .+..+.++.+||+++.-+..-
T Consensus 187 ~---d~~~~~~l~~G~~G~i~~~~n 208 (290)
T TIGR00683 187 F---DEMMLPAASLGVDGAIGSTFN 208 (290)
T ss_pred c---hHHHHHHHHCCCCEEEecHHH
Confidence 2 456778889999999887743
No 489
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=88.38 E-value=2.4 Score=41.50 Aligned_cols=45 Identities=18% Similarity=0.454 Sum_probs=39.2
Q ss_pred CCCccHHHHHHHHHccCccEEEEec--cCHHHHHHHHHhCCcEEEEe
Q 015722 243 DRSLNWKDVKWLQTITSLPILVKGV--LTAEDASLAIQYGAAGIIVS 287 (402)
Q Consensus 243 d~~~~~~~i~~lr~~~~~Pv~vK~~--~~~~da~~a~~aGad~I~vs 287 (402)
.|.++++.+++|++.+++|+++-|. .+.++.+++.+.|+.-|-+.
T Consensus 184 ~p~Ldf~~L~~I~~~~~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~ 230 (282)
T TIGR01858 184 TPKLDFDRLAEIREVVDVPLVLHGASDVPDEDVRRTIELGICKVNVA 230 (282)
T ss_pred CCccCHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCCeEEEeC
Confidence 4678999999999999999999886 45688999999999988874
No 490
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=88.32 E-value=0.95 Score=43.05 Aligned_cols=42 Identities=26% Similarity=0.361 Sum_probs=37.0
Q ss_pred cHHHHHHHHHccCc-cEEEEe-ccCHHHHHHHHHhCCcEEEEec
Q 015722 247 NWKDVKWLQTITSL-PILVKG-VLTAEDASLAIQYGAAGIIVSN 288 (402)
Q Consensus 247 ~~~~i~~lr~~~~~-Pv~vK~-~~~~~da~~a~~aGad~I~vsn 288 (402)
..+.++.+++.++. |+++.+ +.+.++++.+.++|||+|+|.+
T Consensus 171 ~~e~I~~v~~~~~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGS 214 (232)
T PRK04169 171 PPEMVKAVKKALDITPLIYGGGIRSPEQARELMAAGADTIVVGN 214 (232)
T ss_pred CHHHHHHHHHhcCCCcEEEECCCCCHHHHHHHHHhCCCEEEECh
Confidence 46789999999888 999985 6889999999999999999954
No 491
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=88.29 E-value=4.3 Score=37.98 Aligned_cols=82 Identities=21% Similarity=0.241 Sum_probs=60.9
Q ss_pred HHHHHHHHccCccEEEEeccCHHH----HHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCC
Q 015722 249 KDVKWLQTITSLPILVKGVLTAED----ASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVR 324 (402)
Q Consensus 249 ~~i~~lr~~~~~Pv~vK~~~~~~d----a~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~ 324 (402)
+.+.++++.-=+||+.. .++++ ++.+.+.|.+.|-+... .+...+.++.+++.++ --+|+.|=|-
T Consensus 5 ~~~~~l~~~~vI~Vlr~--~~~e~a~~~a~Ali~gGi~~IEITl~-------sp~a~e~I~~l~~~~p--~~lIGAGTVL 73 (211)
T COG0800 5 KILSKLKAQPVVPVIRG--DDVEEALPLAKALIEGGIPAIEITLR-------TPAALEAIRALAKEFP--EALIGAGTVL 73 (211)
T ss_pred HHHHHHHHCCeeEEEEe--CCHHHHHHHHHHHHHcCCCeEEEecC-------CCCHHHHHHHHHHhCc--ccEEcccccc
Confidence 33455555322455432 35555 56788999999999653 3567889999988874 4589999999
Q ss_pred CHHHHHHHHHcCcCEEE
Q 015722 325 RGTDVFKALALGASGVF 341 (402)
Q Consensus 325 ~g~dv~kal~lGAd~V~ 341 (402)
+++++..+.++||+++.
T Consensus 74 ~~~q~~~a~~aGa~fiV 90 (211)
T COG0800 74 NPEQARQAIAAGAQFIV 90 (211)
T ss_pred CHHHHHHHHHcCCCEEE
Confidence 99999999999999875
No 492
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=88.29 E-value=6.5 Score=39.28 Aligned_cols=40 Identities=23% Similarity=0.287 Sum_probs=33.4
Q ss_pred cHHHHHHHHHccCccEEEEec-cCHHHHHHHHHhC-CcEEEE
Q 015722 247 NWKDVKWLQTITSLPILVKGV-LTAEDASLAIQYG-AAGIIV 286 (402)
Q Consensus 247 ~~~~i~~lr~~~~~Pv~vK~~-~~~~da~~a~~aG-ad~I~v 286 (402)
.++..+++|+.+++||++-+. .++++++.+++.| +|.|-+
T Consensus 280 ~~~~~~~ik~~v~iPVi~~G~i~t~~~a~~~l~~g~aD~V~l 321 (338)
T cd04733 280 FLEFAEKIRKVTKTPLMVTGGFRTRAAMEQALASGAVDGIGL 321 (338)
T ss_pred hHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHcCCCCeeee
Confidence 457788999999999988765 5899999999876 898877
No 493
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=88.17 E-value=2.9 Score=41.00 Aligned_cols=46 Identities=22% Similarity=0.474 Sum_probs=39.7
Q ss_pred CCCccHHHHHHHHHccCccEEEEec--cCHHHHHHHHHhCCcEEEEec
Q 015722 243 DRSLNWKDVKWLQTITSLPILVKGV--LTAEDASLAIQYGAAGIIVSN 288 (402)
Q Consensus 243 d~~~~~~~i~~lr~~~~~Pv~vK~~--~~~~da~~a~~aGad~I~vsn 288 (402)
.|.+.++.++.|++.+++|+++-|. ...++.+++.+.|+.-|-++.
T Consensus 187 ~p~L~~~~L~~I~~~~~iPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~T 234 (285)
T PRK07709 187 EPNLGFAEMEQVRDFTGVPLVLHGGTGIPTADIEKAISLGTSKINVNT 234 (285)
T ss_pred CCccCHHHHHHHHHHHCCCEEEeCCCCCCHHHHHHHHHcCCeEEEeCh
Confidence 4678899999999999999999886 456889999999999988853
No 494
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=88.02 E-value=2.7 Score=40.57 Aligned_cols=71 Identities=24% Similarity=0.261 Sum_probs=49.5
Q ss_pred HHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHHH
Q 015722 271 EDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVP 347 (402)
Q Consensus 271 ~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~l 347 (402)
+.|+...++||++|.|-.-. ..-..+++.|..+++.+ ++||..-==|-++.++.++.++|||+|.+=-.++
T Consensus 72 ~~a~~y~~~GA~aiSVlTe~----~~F~Gs~~dL~~v~~~~--~~PvL~KDFIid~~QI~eA~~~GADaVLLI~~~L 142 (254)
T PF00218_consen 72 EIAKAYEEAGAAAISVLTEP----KFFGGSLEDLRAVRKAV--DLPVLRKDFIIDPYQIYEARAAGADAVLLIAAIL 142 (254)
T ss_dssp HHHHHHHHTT-SEEEEE--S----CCCHHHHHHHHHHHHHS--SS-EEEES---SHHHHHHHHHTT-SEEEEEGGGS
T ss_pred HHHHHHHhcCCCEEEEECCC----CCCCCCHHHHHHHHHHh--CCCcccccCCCCHHHHHHHHHcCCCEeehhHHhC
Confidence 44777789999999985321 12234678888888887 7999998889999999999999999998765444
No 495
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=87.88 E-value=6.6 Score=39.17 Aligned_cols=96 Identities=16% Similarity=0.106 Sum_probs=60.1
Q ss_pred cHHHHHHHHHccC-ccEEEEec------cCHHHHHHHH-HhCCcEEEEecCcc-c-CCCCCcchH----HHHHHHHHHhc
Q 015722 247 NWKDVKWLQTITS-LPILVKGV------LTAEDASLAI-QYGAAGIIVSNHGA-R-QLDYVPATV----MALEEVVQAAK 312 (402)
Q Consensus 247 ~~~~i~~lr~~~~-~Pv~vK~~------~~~~da~~a~-~aGad~I~vsn~gg-~-~~d~~~~~~----~~l~~i~~~~~ 312 (402)
.++.++.+|+..+ .|+++-.. .+++++..+. ..++|++.+.-.-. . ....+...+ +.|..+++.+
T Consensus 99 ~~~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~~i~~~~adalel~l~~~q~~~~~~~~~df~~~~~~i~~l~~~~- 177 (326)
T cd02811 99 LAESFTVVREAPPNGPLIANLGAVQLNGYGVEEARRAVEMIEADALAIHLNPLQEAVQPEGDRDFRGWLERIEELVKAL- 177 (326)
T ss_pred hhhHHHHHHHhCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCcchHhhcCCCCCcCHHHHHHHHHHHHHhc-
Confidence 3466778888775 88776432 1566655544 47899998842110 0 011122233 5566666666
Q ss_pred CCCeEEEe--cCCCCHHHHHHHHHcCcCEEEEch
Q 015722 313 GRVPVFLD--GGVRRGTDVFKALALGASGVFVGR 344 (402)
Q Consensus 313 ~~i~via~--GGI~~g~dv~kal~lGAd~V~iGr 344 (402)
++||++= |--.+.+++.+...+|+|++.+..
T Consensus 178 -~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vsG 210 (326)
T cd02811 178 -SVPVIVKEVGFGISRETAKRLADAGVKAIDVAG 210 (326)
T ss_pred -CCCEEEEecCCCCCHHHHHHHHHcCCCEEEECC
Confidence 7899883 433667777777789999999864
No 496
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=87.73 E-value=5.2 Score=38.55 Aligned_cols=92 Identities=23% Similarity=0.308 Sum_probs=62.5
Q ss_pred HHHHHHHHHccCccEEEEec--cCHHH----HHHHHHhCCcEEEEecCcccCCCCC--cchHHHHHHHHHHhcCCCeEEE
Q 015722 248 WKDVKWLQTITSLPILVKGV--LTAED----ASLAIQYGAAGIIVSNHGARQLDYV--PATVMALEEVVQAAKGRVPVFL 319 (402)
Q Consensus 248 ~~~i~~lr~~~~~Pv~vK~~--~~~~d----a~~a~~aGad~I~vsn~gg~~~d~~--~~~~~~l~~i~~~~~~~i~via 319 (402)
.+.++++.+ ++.||.+|-. .++++ ++.+...|-+.|++.-+|-+ .... ...+..++-+++ . ..|||+
T Consensus 106 ~~LL~a~g~-t~kpV~lKrG~~~t~~e~l~aaeyi~~~Gn~~viLcERG~t-f~y~r~~~D~~~ip~~k~-~--~~PVi~ 180 (258)
T TIGR01362 106 TDLLVAAAK-TGRIVNVKKGQFLSPWDMKNVVEKVLSTGNKNILLCERGTS-FGYNNLVVDMRSLPIMRE-L--GCPVIF 180 (258)
T ss_pred HHHHHHHhc-cCCeEEecCCCcCCHHHHHHHHHHHHHcCCCcEEEEeCCCC-cCCCCcccchhhhHHHHh-c--CCCEEE
Confidence 456666655 6899999954 67776 67788899999998766542 2111 224556666554 3 589998
Q ss_pred e---------------cCCCCHHH--HHHHHHcCcCEEEEch
Q 015722 320 D---------------GGVRRGTD--VFKALALGASGVFVGR 344 (402)
Q Consensus 320 ~---------------GGI~~g~d--v~kal~lGAd~V~iGr 344 (402)
| ||.|.--- +..|+++|||+++|=.
T Consensus 181 DpSHsvq~pg~~g~~s~G~r~~v~~la~AAvA~GaDGl~iEv 222 (258)
T TIGR01362 181 DATHSVQQPGGLGGASGGLREFVPTLARAAVAVGIDGLFMET 222 (258)
T ss_pred eCCccccCCCCCCCCCCCcHHHHHHHHHHHHHhCCCEEEEEe
Confidence 7 55554322 3357889999999986
No 497
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=87.72 E-value=25 Score=34.11 Aligned_cols=132 Identities=20% Similarity=0.208 Sum_probs=0.0
Q ss_pred hHHHHHHHHHcCCeEEecCCc------------cCCHHH-------HhhcCCCceEE-----EEeecCChhHHHHHHHHH
Q 015722 124 ECATARAASAAGTIMTLSSWA------------TSSVEE-------VSSTGPGIRFF-----QLYVTKHRNVDAQLVKRA 179 (402)
Q Consensus 124 e~ala~aa~~~G~~~~vs~~~------------~~s~ee-------i~~~~~~~~~~-----QLy~~~d~~~~~~~l~ra 179 (402)
|..+|+.+.++|+..++..-+ ..++++ |++..+.++.+ .=|.. ..+......+-.
T Consensus 24 D~~sA~i~~~aG~d~ilvGdSlgm~~lG~~~t~~vtldem~~h~~aV~rg~~~~~vv~DmPf~sy~~-~e~a~~na~rl~ 102 (263)
T TIGR00222 24 DYSFAKLFADAGVDVILVGDSLGMVVLGHDSTLPVTVADMIYHTAAVKRGAPNCLIVTDLPFMSYAT-PEQALKNAARVM 102 (263)
T ss_pred CHHHHHHHHHcCCCEEEECccHhHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCceEEeCCCcCCCCC-HHHHHHHHHHHH
Q ss_pred HHcCCcEEEEecCCCCCCchhHHHhhhcCCCCccccccccccccccCCCCCchhhHHHhhhhcCCCccHHHHHHHHHccC
Q 015722 180 ERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITS 259 (402)
Q Consensus 180 ~~~G~~ai~itvd~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~lr~~~~ 259 (402)
+++|+.++-| -+.....+.++.+.+. +
T Consensus 103 ~eaGa~aVki----------------------------------------------------Egg~~~~~~i~~l~~~-g 129 (263)
T TIGR00222 103 QETGANAVKL----------------------------------------------------EGGEWLVETVQMLTER-G 129 (263)
T ss_pred HHhCCeEEEE----------------------------------------------------cCcHhHHHHHHHHHHC-C
Q ss_pred ccEEEEeccCH-----------------------HHHHHHHHhCCcEEEEecCcccCCCCCcchHHHHHHHHHHhcCCCe
Q 015722 260 LPILVKGVLTA-----------------------EDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVP 316 (402)
Q Consensus 260 ~Pv~vK~~~~~-----------------------~da~~a~~aGad~I~vsn~gg~~~d~~~~~~~~l~~i~~~~~~~i~ 316 (402)
+||+--..++| ++|+.++++||++|.+ -+.+ .+...+|.+.+ ++|
T Consensus 130 IpV~gHiGltPq~a~~~ggy~~qgrt~~~a~~~i~~A~a~e~AGA~~ivl---------E~vp-~~~a~~It~~l--~iP 197 (263)
T TIGR00222 130 VPVVGHLGLTPQSVNILGGYKVQGKDEEAAKKLLEDALALEEAGAQLLVL---------ECVP-VELAAKITEAL--AIP 197 (263)
T ss_pred CCEEEecCCCceeEeecCCeeecCCCHHHHHHHHHHHHHHHHcCCCEEEE---------cCCc-HHHHHHHHHhC--CCC
Q ss_pred EEEec
Q 015722 317 VFLDG 321 (402)
Q Consensus 317 via~G 321 (402)
+|.-|
T Consensus 198 ~iGIG 202 (263)
T TIGR00222 198 VIGIG 202 (263)
T ss_pred EEeec
No 498
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=87.72 E-value=3.1 Score=40.77 Aligned_cols=46 Identities=22% Similarity=0.459 Sum_probs=39.5
Q ss_pred CCCccHHHHHHHHHccCccEEEEec--cCHHHHHHHHHhCCcEEEEec
Q 015722 243 DRSLNWKDVKWLQTITSLPILVKGV--LTAEDASLAIQYGAAGIIVSN 288 (402)
Q Consensus 243 d~~~~~~~i~~lr~~~~~Pv~vK~~--~~~~da~~a~~aGad~I~vsn 288 (402)
.|.++++.++.|++.+++|+++-|. .+.++.+++.+.|+.-|-++.
T Consensus 186 ~p~Ld~~~L~~I~~~~~iPLVlHGgSG~~~e~~~kai~~Gi~KiNi~T 233 (284)
T PRK12737 186 EPKLDFERLAEIREKVSIPLVLHGASGVPDEDVKKAISLGICKVNVAT 233 (284)
T ss_pred CCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHCCCeEEEeCc
Confidence 4678999999999999999999886 456789999999999888753
No 499
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=87.64 E-value=3.3 Score=40.61 Aligned_cols=45 Identities=13% Similarity=0.392 Sum_probs=39.0
Q ss_pred CCCccHHHHHHHHHccCccEEEEec--cCHHHHHHHHHhCCcEEEEe
Q 015722 243 DRSLNWKDVKWLQTITSLPILVKGV--LTAEDASLAIQYGAAGIIVS 287 (402)
Q Consensus 243 d~~~~~~~i~~lr~~~~~Pv~vK~~--~~~~da~~a~~aGad~I~vs 287 (402)
.|.++++.+++|++.+++|+++-|. ...++.+++.+.|+.-|-+.
T Consensus 186 ~p~Ldfd~l~~I~~~~~vPLVLHGgSG~~~e~~~kai~~GI~KiNi~ 232 (286)
T PRK12738 186 TPKIDFQRLAEIREVVDVPLVLHGASDVPDEFVRRTIELGVTKVNVA 232 (286)
T ss_pred CCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcCCeEEEeC
Confidence 4678899999999999999999886 34688999999999988874
No 500
>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=87.58 E-value=0.27 Score=46.30 Aligned_cols=94 Identities=16% Similarity=0.139 Sum_probs=56.0
Q ss_pred CHHHHHHHHHhCCcEEEEecCccc-CC-CCCcchHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHcCcCEEEEchHH
Q 015722 269 TAEDASLAIQYGAAGIIVSNHGAR-QL-DYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPV 346 (402)
Q Consensus 269 ~~~da~~a~~aGad~I~vsn~gg~-~~-d~~~~~~~~l~~i~~~~~~~i~via~GGI~~g~dv~kal~lGAd~V~iGr~~ 346 (402)
+.++++.+.+.|++-+++ |-+. .. .+...+...+..+++.++.+.++++.|||| +....+.-..+.|.+.+|||+
T Consensus 118 t~~~~~~l~~~g~~~~v~--h~a~~a~~~G~v~s~~e~~~ir~~~~~~~~i~VtpGIr-~~~~~~~dq~rvd~iVVGR~I 194 (218)
T PRK13305 118 TLDDARDWHRIGVRQAIY--HRGRDAQASGQQWGEADLARMKALSDIGLELSITGGIT-PADLPLFKDIRVKAFIAGRAL 194 (218)
T ss_pred CcchHHHHHHcCCHHHHH--HHHHHHHHhCCCCCHHHHHHHHHHhCCCCcEEEeCCcC-ccccccccccCCCEEEECCcc
Confidence 444555555666653333 2111 11 112233455677777765567799999999 344445556788999999998
Q ss_pred HHhhhcCChHHHHHHHHHHHHHHHH
Q 015722 347 PFSLAVDGEAGVRKVLQMLRDEFEL 371 (402)
Q Consensus 347 l~~~~~~G~~gv~~~i~~l~~el~~ 371 (402)
..+ +......+.+.+++..
T Consensus 195 t~A------~dP~~aa~~i~~~i~~ 213 (218)
T PRK13305 195 AGA------ANPAQVAADFHAQIDA 213 (218)
T ss_pred cCC------CCHHHHHHHHHHHHHH
Confidence 753 2233456677777654
Done!