BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015723
(402 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WDR|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta-Amylase
Length = 495
Score = 334 bits (856), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 151/286 (52%), Positives = 198/286 (69%), Gaps = 1/286 (0%)
Query: 110 YVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWS 169
YVPVYVMLPLG+++++ DP+ L QL L++ VDGVMVD WWGI+E P+ Y+W
Sbjct: 11 YVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWR 70
Query: 170 GYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRR 229
YR L Q+V+E L LQ +MSFH+CGGNVGD V+IP+PQWV++IG++N +I++T+R G R
Sbjct: 71 AYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTR 130
Query: 230 NSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRYP 289
N E LT G+D E + GRTA+E+Y DYM+SFR ++F G+I +IEVGLGP GELRYP
Sbjct: 131 NKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYP 190
Query: 290 TYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFWARGPGNAGSYNSTPHETGFFR 349
+YP GW++PGIGEFQCYDKYL A GH W P +AG YN P TGFF+
Sbjct: 191 SYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWEL-PDDAGKYNDVPESTGFFK 249
Query: 350 DGGEYDSYYGRFFLNWYSQVLIDHGDRVFALANLAFEGTCISAKVS 395
G Y + G+FFL WYS L++HGD++ AN AF G + +
Sbjct: 250 SNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGXKVKLAIK 295
>pdb|1Q6G|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (N340t)
With Increased Ph Optimum
Length = 495
Score = 333 bits (854), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 151/286 (52%), Positives = 198/286 (69%), Gaps = 1/286 (0%)
Query: 110 YVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWS 169
YVPVYVMLPLG+++++ DP+ L QL L++ VDGVMVD WWGI+E P+ Y+W
Sbjct: 11 YVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWR 70
Query: 170 GYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRR 229
YR L Q+V+E L LQ +MSFH+CGGNVGD V+IP+PQWV++IG++N +I++T+R G R
Sbjct: 71 AYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTR 130
Query: 230 NSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRYP 289
N E LT G+D E + GRTA+E+Y DYM+SFR ++F G+I +IEVGLGP GELRYP
Sbjct: 131 NKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYP 190
Query: 290 TYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFWARGPGNAGSYNSTPHETGFFR 349
+YP GW++PGIGEFQCYDKYL A GH W P +AG YN P TGFF+
Sbjct: 191 SYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWEL-PDDAGKYNDVPESTGFFK 249
Query: 350 DGGEYDSYYGRFFLNWYSQVLIDHGDRVFALANLAFEGTCISAKVS 395
G Y + G+FFL WYS L++HGD++ AN AF G + +
Sbjct: 250 SNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIK 295
>pdb|1UKP|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKP|B Chain B, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKP|C Chain C, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKP|D Chain D, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
Length = 495
Score = 333 bits (854), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 151/286 (52%), Positives = 198/286 (69%), Gaps = 1/286 (0%)
Query: 110 YVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWS 169
YVPVYVMLPLG+++++ DP+ L QL L++ VDGVMVD WWGI+E P+ Y+W
Sbjct: 11 YVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWR 70
Query: 170 GYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRR 229
YR L Q+V+E L LQ +MSFH+CGGNVGD V+IP+PQWV++IG++N +I++T+R G R
Sbjct: 71 AYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTR 130
Query: 230 NSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRYP 289
N E LT G+D E + GRTA+E+Y DYM+SFR ++F G+I +IEVGLGP GELRYP
Sbjct: 131 NKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYP 190
Query: 290 TYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFWARGPGNAGSYNSTPHETGFFR 349
+YP GW++PGIGEFQCYDKYL A GH W P +AG YN P TGFF+
Sbjct: 191 SYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWEL-PDDAGKYNDVPESTGFFK 249
Query: 350 DGGEYDSYYGRFFLNWYSQVLIDHGDRVFALANLAFEGTCISAKVS 395
G Y + G+FFL WYS L++HGD++ AN AF G + +
Sbjct: 250 SNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIK 295
>pdb|1UKO|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKO|B Chain B, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKO|C Chain C, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKO|D Chain D, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
Length = 495
Score = 333 bits (854), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 151/286 (52%), Positives = 198/286 (69%), Gaps = 1/286 (0%)
Query: 110 YVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWS 169
YVPVYVMLPLG+++++ DP+ L QL L++ VDGVMVD WWGI+E P+ Y+W
Sbjct: 11 YVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWR 70
Query: 170 GYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRR 229
YR L Q+V+E L LQ +MSFH+CGGNVGD V+IP+PQWV++IG++N +I++T+R G R
Sbjct: 71 AYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTR 130
Query: 230 NSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRYP 289
N E LT G+D E + GRTA+E+Y DYM+SFR ++F G+I +IEVGLGP GELRYP
Sbjct: 131 NKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYP 190
Query: 290 TYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFWARGPGNAGSYNSTPHETGFFR 349
+YP GW++PGIGEFQCYDKYL A GH W P +AG YN P TGFF+
Sbjct: 191 SYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWEL-PDDAGKYNDVPESTGFFK 249
Query: 350 DGGEYDSYYGRFFLNWYSQVLIDHGDRVFALANLAFEGTCISAKVS 395
G Y + G+FFL WYS L++HGD++ AN AF G + +
Sbjct: 250 SNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIK 295
>pdb|1V3I|A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction
Of Soybean Beta-Amylase
Length = 495
Score = 333 bits (854), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 151/286 (52%), Positives = 198/286 (69%), Gaps = 1/286 (0%)
Query: 110 YVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWS 169
YVPVYVMLPLG+++++ DP+ L QL L++ VDGVMVD WWGI+E P+ Y+W
Sbjct: 11 YVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWR 70
Query: 170 GYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRR 229
YR L Q+V+E L LQ +MSFH+CGGNVGD V+IP+PQWV++IG++N +I++T+R G R
Sbjct: 71 AYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTR 130
Query: 230 NSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRYP 289
N E LT G+D E + GRTA+E+Y DYM+SFR ++F G+I +IEVGLGP GELRYP
Sbjct: 131 NKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYP 190
Query: 290 TYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFWARGPGNAGSYNSTPHETGFFR 349
+YP GW++PGIGEFQCYDKYL A GH W P +AG YN P TGFF+
Sbjct: 191 SYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWEL-PDDAGKYNDVPESTGFFK 249
Query: 350 DGGEYDSYYGRFFLNWYSQVLIDHGDRVFALANLAFEGTCISAKVS 395
G Y + G+FFL WYS L++HGD++ AN AF G + +
Sbjct: 250 SNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIK 295
>pdb|1WDS|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta- Amylase
Length = 495
Score = 333 bits (854), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 151/286 (52%), Positives = 198/286 (69%), Gaps = 1/286 (0%)
Query: 110 YVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWS 169
YVPVYVMLPLG+++++ DP+ L QL L++ VDGVMVD WWGI+E P+ Y+W
Sbjct: 11 YVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWR 70
Query: 170 GYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRR 229
YR L Q+V+E L LQ +MSFH+CGGNVGD V+IP+PQWV++IG++N +I++T+R G R
Sbjct: 71 AYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTR 130
Query: 230 NSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRYP 289
N E LT G+D E + GRTA+E+Y DYM+SFR ++F G+I +IEVGLGP GELRYP
Sbjct: 131 NKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYP 190
Query: 290 TYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFWARGPGNAGSYNSTPHETGFFR 349
+YP GW++PGIGEFQCYDKYL A GH W P +AG YN P TGFF+
Sbjct: 191 SYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWEL-PDDAGKYNDVPESTGFFK 249
Query: 350 DGGEYDSYYGRFFLNWYSQVLIDHGDRVFALANLAFEGTCISAKVS 395
G Y + G+FFL WYS L++HGD++ AN AF G + +
Sbjct: 250 SNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIK 295
>pdb|1Q6C|A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With
Maltose
pdb|1WDP|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta-Amylase
pdb|1BFN|A Chain A, Beta-AmylaseBETA-Cyclodextrin Complex
Length = 495
Score = 333 bits (854), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 151/286 (52%), Positives = 198/286 (69%), Gaps = 1/286 (0%)
Query: 110 YVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWS 169
YVPVYVMLPLG+++++ DP+ L QL L++ VDGVMVD WWGI+E P+ Y+W
Sbjct: 11 YVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWR 70
Query: 170 GYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRR 229
YR L Q+V+E L LQ +MSFH+CGGNVGD V+IP+PQWV++IG++N +I++T+R G R
Sbjct: 71 AYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTR 130
Query: 230 NSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRYP 289
N E LT G+D E + GRTA+E+Y DYM+SFR ++F G+I +IEVGLGP GELRYP
Sbjct: 131 NKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYP 190
Query: 290 TYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFWARGPGNAGSYNSTPHETGFFR 349
+YP GW++PGIGEFQCYDKYL A GH W P +AG YN P TGFF+
Sbjct: 191 SYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWEL-PDDAGKYNDVPESTGFFK 249
Query: 350 DGGEYDSYYGRFFLNWYSQVLIDHGDRVFALANLAFEGTCISAKVS 395
G Y + G+FFL WYS L++HGD++ AN AF G + +
Sbjct: 250 SNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIK 295
>pdb|1WDQ|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta-Amylase
Length = 495
Score = 333 bits (854), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 151/286 (52%), Positives = 198/286 (69%), Gaps = 1/286 (0%)
Query: 110 YVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWS 169
YVPVYVMLPLG+++++ DP+ L QL L++ VDGVMVD WWGI+E P+ Y+W
Sbjct: 11 YVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWR 70
Query: 170 GYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRR 229
YR L Q+V+E L LQ +MSFH+CGGNVGD V+IP+PQWV++IG++N +I++T+R G R
Sbjct: 71 AYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTR 130
Query: 230 NSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRYP 289
N E LT G+D E + GRTA+E+Y DYM+SFR ++F G+I +IEVGLGP GELRYP
Sbjct: 131 NKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYP 190
Query: 290 TYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFWARGPGNAGSYNSTPHETGFFR 349
+YP GW++PGIGEFQCYDKYL A GH W P +AG YN P TGFF+
Sbjct: 191 SYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWEL-PDDAGKYNDVPESTGFFK 249
Query: 350 DGGEYDSYYGRFFLNWYSQVLIDHGDRVFALANLAFEGTCISAKVS 395
G Y + G+FFL WYS L++HGD++ AN AF G + +
Sbjct: 250 SNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIK 295
>pdb|1BYA|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYB|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYC|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYD|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
Length = 495
Score = 332 bits (851), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 151/286 (52%), Positives = 198/286 (69%), Gaps = 1/286 (0%)
Query: 110 YVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWS 169
YVPVYVMLPLG+++++ DP+ L QL L++ VDGVMVD WWGI+E P+ Y+W
Sbjct: 11 YVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWR 70
Query: 170 GYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRR 229
YR LFQ+V+E L LQ +MSFH+CGGNVGD V+IP+PQWV++IG++N +I++T+R G R
Sbjct: 71 AYRSLFQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTR 130
Query: 230 NSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRYP 289
N E LT G+D E + GRTA+E+Y DYM+SFR ++F G+I +IEVGLGP GELRYP
Sbjct: 131 NKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYP 190
Query: 290 TYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFWARGPGNAGSYNSTPHETGFFR 349
+YP GW++P IGEFQCYDKYL A GH W P +AG YN P TGFF+
Sbjct: 191 SYPQSQGWEFPRIGEFQCYDKYLKADFKAAVARAGHPEWEL-PDDAGKYNDVPESTGFFK 249
Query: 350 DGGEYDSYYGRFFLNWYSQVLIDHGDRVFALANLAFEGTCISAKVS 395
G Y + G+FFL WYS L++HGD++ AN AF G + +
Sbjct: 250 SNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIK 295
>pdb|1BTC|A Chain A, Three-Dimensional Structure Of Soybean Beta-Amylase
Determined At 3.0 Angstroms Resolution: Preliminary
Chain Tracing Of The Complex With Alpha-Cyclodextrin
Length = 491
Score = 332 bits (851), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 151/286 (52%), Positives = 198/286 (69%), Gaps = 1/286 (0%)
Query: 110 YVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWS 169
YVPVYVMLPLG+++++ DP+ L QL L++ VDGVMVD WWGI+E P+ Y+W
Sbjct: 7 YVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWR 66
Query: 170 GYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRR 229
YR LFQ+V+E L LQ +MSFH+CGGNVGD V+IP+PQWV++IG++N +I++T+R G R
Sbjct: 67 AYRSLFQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTR 126
Query: 230 NSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRYP 289
N E LT G+D E + GRTA+E+Y DYM+SFR ++F G+I +IEVGLGP GELRYP
Sbjct: 127 NKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYP 186
Query: 290 TYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFWARGPGNAGSYNSTPHETGFFR 349
+YP GW++P IGEFQCYDKYL A GH W P +AG YN P TGFF+
Sbjct: 187 SYPQSQGWEFPRIGEFQCYDKYLKADFKAAVARAGHPEWEL-PDDAGKYNDVPESTGFFK 245
Query: 350 DGGEYDSYYGRFFLNWYSQVLIDHGDRVFALANLAFEGTCISAKVS 395
G Y + G+FFL WYS L++HGD++ AN AF G + +
Sbjct: 246 SNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIK 291
>pdb|1V3H|A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction
Of Soybean Beta-Amylase
Length = 495
Score = 332 bits (851), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 150/286 (52%), Positives = 198/286 (69%), Gaps = 1/286 (0%)
Query: 110 YVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWS 169
YVPVYVMLPLG+++++ DP+ L QL L++ VDGVMVD WWGI+E P+ Y+W
Sbjct: 11 YVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWR 70
Query: 170 GYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRR 229
YR L Q+V+E L LQ +MSFH+CGGNVGD V+IP+PQWV++IG++N +I++T+R G R
Sbjct: 71 AYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTR 130
Query: 230 NSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRYP 289
N E LT G+D E + GRTA+E+Y DYM+SFR ++F G+I +IEVGLGP G+LRYP
Sbjct: 131 NKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGQLRYP 190
Query: 290 TYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFWARGPGNAGSYNSTPHETGFFR 349
+YP GW++PGIGEFQCYDKYL A GH W P +AG YN P TGFF+
Sbjct: 191 SYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWEL-PDDAGKYNDVPESTGFFK 249
Query: 350 DGGEYDSYYGRFFLNWYSQVLIDHGDRVFALANLAFEGTCISAKVS 395
G Y + G+FFL WYS L++HGD++ AN AF G + +
Sbjct: 250 SNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIK 295
>pdb|1Q6D|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (M51t)
With Increased Ph Optimum
Length = 495
Score = 331 bits (848), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 150/286 (52%), Positives = 197/286 (68%), Gaps = 1/286 (0%)
Query: 110 YVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWS 169
YVPVYVMLPLG+++++ DP+ L QL L++ VDGV VD WWGI+E P+ Y+W
Sbjct: 11 YVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVTVDVWWGIIELKGPKQYDWR 70
Query: 170 GYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRR 229
YR L Q+V+E L LQ +MSFH+CGGNVGD V+IP+PQWV++IG++N +I++T+R G R
Sbjct: 71 AYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTR 130
Query: 230 NSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRYP 289
N E LT G+D E + GRTA+E+Y DYM+SFR ++F G+I +IEVGLGP GELRYP
Sbjct: 131 NKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYP 190
Query: 290 TYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFWARGPGNAGSYNSTPHETGFFR 349
+YP GW++PGIGEFQCYDKYL A GH W P +AG YN P TGFF+
Sbjct: 191 SYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWEL-PDDAGKYNDVPESTGFFK 249
Query: 350 DGGEYDSYYGRFFLNWYSQVLIDHGDRVFALANLAFEGTCISAKVS 395
G Y + G+FFL WYS L++HGD++ AN AF G + +
Sbjct: 250 SNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIK 295
>pdb|2DQX|A Chain A, Mutant Beta-Amylase (W55r) From Soy Bean
Length = 495
Score = 331 bits (848), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 151/286 (52%), Positives = 198/286 (69%), Gaps = 1/286 (0%)
Query: 110 YVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWS 169
YVPVYVMLPLG+++++ DP+ L QL L++ VDGVMVD WGI+E P+ Y+W
Sbjct: 11 YVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVRWGIIELKGPKQYDWR 70
Query: 170 GYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRR 229
YR LFQ+V+E L LQ +MSFH+CGGNVGD V+IP+PQWV++IG++N +I++T+R G R
Sbjct: 71 AYRSLFQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTR 130
Query: 230 NSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRYP 289
N E LT G+D E + GRTA+E+Y DYM+SFR ++F G+I +IEVGLGP GELRYP
Sbjct: 131 NKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYP 190
Query: 290 TYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFWARGPGNAGSYNSTPHETGFFR 349
+YP GW++PGIGEFQCYDKYL A GH W P +AG YN P TGFF+
Sbjct: 191 SYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWEL-PDDAGKYNDVPESTGFFK 249
Query: 350 DGGEYDSYYGRFFLNWYSQVLIDHGDRVFALANLAFEGTCISAKVS 395
G Y + G+FFL WYS L++HGD++ AN AF G + +
Sbjct: 250 SNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIK 295
>pdb|1Q6E|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (E178y)
With Increased Ph Optimum At Ph 5.4
pdb|1Q6F|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (E178y)
With Increased Ph Optimum At Ph 7.1
Length = 495
Score = 330 bits (846), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 150/286 (52%), Positives = 197/286 (68%), Gaps = 1/286 (0%)
Query: 110 YVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWS 169
YVPVYVMLPLG+++++ DP+ L QL L++ VDGVMVD WWGI+E P+ Y+W
Sbjct: 11 YVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWR 70
Query: 170 GYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRR 229
YR L Q+V+E L LQ +MSFH+CGGNVGD V+IP+PQWV++IG++N +I++T+R G R
Sbjct: 71 AYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTR 130
Query: 230 NSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRYP 289
N E LT G+D E + GRTA+E+Y DYM+SFR ++F G+I +I VGLGP GELRYP
Sbjct: 131 NKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIYVGLGPAGELRYP 190
Query: 290 TYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFWARGPGNAGSYNSTPHETGFFR 349
+YP GW++PGIGEFQCYDKYL A GH W P +AG YN P TGFF+
Sbjct: 191 SYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWEL-PDDAGKYNDVPESTGFFK 249
Query: 350 DGGEYDSYYGRFFLNWYSQVLIDHGDRVFALANLAFEGTCISAKVS 395
G Y + G+FFL WYS L++HGD++ AN AF G + +
Sbjct: 250 SNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIK 295
>pdb|1FA2|A Chain A, Crystal Structure Of Beta-Amylase From Sweet Potato
Length = 498
Score = 322 bits (824), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 149/294 (50%), Positives = 203/294 (69%), Gaps = 2/294 (0%)
Query: 110 YVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWS 169
YV +YVMLPLG+++ + D E + ++LK +K+ DGVMVD WWGI+EA P+ Y+WS
Sbjct: 12 YVSLYVMLPLGVVNADNVFPDKEKVEDELKQVKAGGCDGVMVDVWWGIIEAKGPKQYDWS 71
Query: 170 GYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRR 229
YR LFQ+V++ LK+Q +MSFH+CGGNVGD V IP+PQW+++IG NP+I++T+R G R
Sbjct: 72 AYRELFQLVKKCGLKIQAIMSFHQCGGNVGDAVFIPIPQWILQIGDKNPDIFYTNRAGNR 131
Query: 230 NSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRYP 289
N E L+ G+D +R+ +GRTA+E+Y D+M SFR +F G I +IEVG G GELRYP
Sbjct: 132 NQEYLSLGVDNQRLFQGRTALEMYRDFMESFRDNMADFLKAGDIVDIEVGCGAAGELRYP 191
Query: 290 TYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFWARGPGNAGSYNSTPHETGFFR 349
+YP GW +PGIGEFQCYDKY++ +A + G+ W AG+YN TP +T FFR
Sbjct: 192 SYPETQGWVFPGIGEFQCYDKYMVADWKEAVKQAGNADWEMPGKGAGTYNDTPDKTEFFR 251
Query: 350 DGGEYDSYYGRFFLNWYSQVLIDHGDRVFALANLAFEG--TCISAKVSHQNFFF 401
G Y + G+FFL WYS LI HGD+V AN F G I+AKVS ++++
Sbjct: 252 PNGTYKTDMGKFFLTWYSNKLIIHGDQVLEEANKVFVGLRVNIAAKVSGIHWWY 305
>pdb|1B1Y|A Chain A, Sevenfold Mutant Of Barley Beta-Amylase
Length = 500
Score = 316 bits (809), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 152/286 (53%), Positives = 190/286 (66%), Gaps = 1/286 (0%)
Query: 110 YVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWS 169
YV VYVMLPL + +N + L QL+ L VDGVMVD WWG+VE P+ Y+WS
Sbjct: 5 YVQVYVMLPLDAVSVNNRFEKGDELRAQLRKLVEAGVDGVMVDVWWGLVEGKGPKAYDWS 64
Query: 170 GYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRR 229
Y++LF++V++ LKLQ +MSFH+CGGNVGD V+IP+PQWV ++G +P+I++TD G R
Sbjct: 65 AYKQLFELVQKAGLKLQAIMSFHQCGGNVGDAVNIPIPQWVRDVGTRDPDIFYTDGHGTR 124
Query: 230 NSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRYP 289
N E LT G+D + + GR+AV++Y DYM SFR +F G+I +IEVGLGP GELRYP
Sbjct: 125 NIEYLTLGVDNQPLFHGRSAVQMYADYMTSFRENMKDFLDAGVIVDIEVGLGPAGELRYP 184
Query: 290 TYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFWARGPGNAGSYNSTPHETGFFR 349
+YP HGW +PGIGEF CYDKYL AA A GH W P +AG YN TP T FFR
Sbjct: 185 SYPQSHGWSFPGIGEFICYDKYLQADFKAAAAAVGHPEW-EFPNDAGQYNDTPERTQFFR 243
Query: 350 DGGEYDSYYGRFFLNWYSQVLIDHGDRVFALANLAFEGTCISAKVS 395
D G Y S GRFFL WYS LI HGDR+ AN F G + +
Sbjct: 244 DNGTYLSEKGRFFLAWYSNNLIKHGDRILDEANKVFLGYKVQLAIK 289
>pdb|2XFF|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
Acarbose
pdb|2XFR|A Chain A, Crystal Structure Of Barley Beta-Amylase At Atomic
Resolution
pdb|2XFY|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
Alpha-Cyclodextrin
pdb|2XG9|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
4-O- Alpha-D-Glucopyranosylmoranoline
pdb|2XGB|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
2,3- Epoxypropyl-Alpha-D-Glucopyranoside
pdb|2XGI|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
3,4- Epoxybutyl Alpha-D-Glucopyranoside
Length = 535
Score = 315 bits (808), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 151/286 (52%), Positives = 189/286 (66%), Gaps = 1/286 (0%)
Query: 110 YVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWS 169
YV VYVMLPL + +N + L QL+ L VDGVMVD WWG+VE P+ Y+WS
Sbjct: 9 YVQVYVMLPLDAVSVNNRFEKGDELRAQLRKLVEAGVDGVMVDVWWGLVEGKGPKAYDWS 68
Query: 170 GYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRR 229
Y++LF++V++ LKLQ +MSFH+CGGNVGD V+IP+PQWV ++G +P+I++TD G R
Sbjct: 69 AYKQLFELVQKAGLKLQAIMSFHQCGGNVGDAVNIPIPQWVRDVGTRDPDIFYTDGHGTR 128
Query: 230 NSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRYP 289
N E LT G+D + + GR+AV++Y DYM SFR EF G+I +IEVGLGP GE+RYP
Sbjct: 129 NIEYLTLGVDNQPLFHGRSAVQMYADYMTSFRENMKEFLDAGVIVDIEVGLGPAGEMRYP 188
Query: 290 TYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFWARGPGNAGSYNSTPHETGFFR 349
+YP HGW +PGIGEF CYDKYL AA A GH W P + G YN TP T FFR
Sbjct: 189 SYPQSHGWSFPGIGEFICYDKYLQADFKAAAAAVGHPEWEF-PNDVGQYNDTPERTQFFR 247
Query: 350 DGGEYDSYYGRFFLNWYSQVLIDHGDRVFALANLAFEGTCISAKVS 395
D G Y S GRFFL WYS LI HGDR+ AN F G + +
Sbjct: 248 DNGTYLSEKGRFFLAWYSNNLIKHGDRILDEANKVFLGYKVQLAIK 293
>pdb|3VOC|A Chain A, Crystal Structure Of The Catalytic Domain Of Beta-amylase
From Paenibacillus Polymyxa
Length = 419
Score = 148 bits (373), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 102/292 (34%), Positives = 140/292 (47%), Gaps = 31/292 (10%)
Query: 115 VMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRL 174
VM PL I+ D QL+ LK+ V + D WWG VE+ ++WS Y+
Sbjct: 10 VMGPLAKIN------DWGSFKKQLQTLKNNGVYAITTDVWWGYVESAGDNQFDWSYYKTY 63
Query: 175 FQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRRNSECL 234
V+E LK ++S H+CGGNVGDD +IPLP W+ G + E+ F D G NSE L
Sbjct: 64 ANAVKEAGLKWVPIISTHKCGGNVGDDCNIPLPSWLSSKGSAD-EMQFKDESGYANSEAL 122
Query: 235 T--WGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRYPTYP 292
+ W G+ E+Y + +F II +I + GP GELRYP+Y
Sbjct: 123 SPLW------SGTGKQYDELYASFAENFAG------YKSIIPKIYLSGGPSGELRYPSYY 170
Query: 293 AKHGWKYPGIGEFQCYDKYLMKSLSKAAEAR-GHL-----FWARGPGNAGSYNSTPHETG 346
GW YPG G+FQ Y + + A + G L W + N G
Sbjct: 171 PAAGWSYPGRGKFQAYTETAKNAFRTAMNDKYGSLDKINAAWGTKLTSLSQINPPTDGDG 230
Query: 347 FFRDGGEYDSYYGRFFLNWYSQVLIDHGDRVFALANLAFE---GTCISAKVS 395
F+ +GG Y+S YG+ FL+WY VL H + A A+ F+ G I AK+S
Sbjct: 231 FYTNGG-YNSAYGKDFLSWYQSVLEKHLGVIGAAAHKNFDSVFGVRIGAKIS 281
>pdb|1VEP|A Chain A, Crystal Structure Analysis Of Triple (T47mY164ET328N)
MALTOSE OF BACILLUS CEREUS BETA-Amylase At Ph 6.5
Length = 516
Score = 127 bits (319), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 92/305 (30%), Positives = 142/305 (46%), Gaps = 40/305 (13%)
Query: 108 TPYVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYN 167
P Y+M PL I E+ + E N L+ K +MVD WWG +E + Q ++
Sbjct: 8 NPDYKAYLMAPLKKI---PEVTNWETFENDLRWAKQNGFYAIMVDFWWGDMEKNGDQQFD 64
Query: 168 WSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREG 227
+S +R Q V+ +K+ ++S H+CGGNVGDD ++P+P WV +++ +YF G
Sbjct: 65 FSYAQRFAQSVKNAGMKMIPIISTHQCGGNVGDDCNVPIPSWVWN-QKSDDSLYFKSETG 123
Query: 228 RRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELR 287
N E L L + Y + +F + +IA+IE+ GP GELR
Sbjct: 124 TVNKETL-------NPLASDVIRKEYGELYTAFAAAMKPY--KDVIAKIELSGGPAGELR 174
Query: 288 YPTYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFWARGPGNAGSYNST------ 341
YP+Y G YP G+FQ Y ++ A+++ L+ G+ N
Sbjct: 175 YPSYTTSDGTGYPSRGKFQAYTEF--------AKSKFRLWVLNKYGSLNEVNKAWGTKLI 226
Query: 342 ------PHETG--FFRDGGEYDSYYGRFFLNWYSQVLIDHGDRVFALANLAFEGTC---I 390
P G F +G Y S YG+ +L WY +L +H + LA+ AF+ T I
Sbjct: 227 SELAILPPSDGEQFLMNG--YLSMYGKDYLEWYQGILENHTKLIGELAHNAFDTTFQVPI 284
Query: 391 SAKVS 395
AK++
Sbjct: 285 GAKIA 289
>pdb|1VEN|A Chain A, Crystal Structure Analysis Of Y164eMALTOSE OF BACILUS
Cereus Beta-Amylase At Ph 4.6
Length = 516
Score = 125 bits (314), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 91/304 (29%), Positives = 141/304 (46%), Gaps = 40/304 (13%)
Query: 109 PYVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNW 168
P Y+M PL I E+ + E N L+ K + VD WWG +E + Q +++
Sbjct: 9 PDYKAYLMAPLKKI---PEVTNWETFENDLRWAKQNGFYAITVDFWWGDMEKNGDQQFDF 65
Query: 169 SGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGR 228
S +R Q V+ +K+ ++S H+CGGNVGDD ++P+P WV +++ +YF G
Sbjct: 66 SYAQRFAQSVKNAGMKMIPIISTHQCGGNVGDDCNVPIPSWVWN-QKSDDSLYFKSETGT 124
Query: 229 RNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRY 288
N E L L + Y + +F + +IA+IE+ GP GELRY
Sbjct: 125 VNKETL-------NPLASDVIRKEYGELYTAFAAAMKPY--KDVIAKIELSGGPAGELRY 175
Query: 289 PTYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFWARGPGNAGSYNST------- 341
P+Y G YP G+FQ Y ++ A+++ L+ G+ N
Sbjct: 176 PSYTTSDGTGYPSRGKFQAYTEF--------AKSKFRLWVLNKYGSLNEVNKAWGTKLIS 227
Query: 342 -----PHETG--FFRDGGEYDSYYGRFFLNWYSQVLIDHGDRVFALANLAFEGTC---IS 391
P G F +G Y S YG+ +L WY +L +H + LA+ AF+ T I
Sbjct: 228 ELAILPPSDGEQFLMNG--YLSMYGKDYLEWYQGILENHTKLIGELAHNAFDTTFQVPIG 285
Query: 392 AKVS 395
AK++
Sbjct: 286 AKIA 289
>pdb|1B90|A Chain A, Bacillus Cereus Beta-Amylase Apo Form
pdb|1B9Z|A Chain A, Bacillus Cereus Beta-Amylase Complexed With Maltose
pdb|5BCA|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|5BCA|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|5BCA|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|5BCA|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|1J18|A Chain A, Crystal Structure Of A Beta-Amylase From Bacillus Cereus
Var. Mycoides Cocrystallized With Maltose
pdb|1J0Y|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Glucose
pdb|1J0Y|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Glucose
pdb|1J0Y|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Glucose
pdb|1J0Y|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Glucose
pdb|1J0Z|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Maltose
pdb|1J0Z|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Maltose
pdb|1J0Z|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Maltose
pdb|1J0Z|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Maltose
pdb|1J10|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Ggx
pdb|1J10|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Ggx
pdb|1J10|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Ggx
pdb|1J10|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Ggx
pdb|1J11|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Epg
pdb|1J11|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Epg
pdb|1J11|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Epg
pdb|1J11|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Epg
pdb|1J12|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Ebg
pdb|1J12|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Ebg
pdb|1J12|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Ebg
pdb|1J12|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Ebg
pdb|1VEM|A Chain A, Crystal Structure Analysis Of Bacillus Cereus Beta-amylase
At The Optimum Ph (6.5)
Length = 516
Score = 122 bits (306), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 90/304 (29%), Positives = 140/304 (46%), Gaps = 40/304 (13%)
Query: 109 PYVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNW 168
P Y+M PL I E+ + E N L+ K + VD WWG +E + Q +++
Sbjct: 9 PDYKAYLMAPLKKI---PEVTNWETFENDLRWAKQNGFYAITVDFWWGDMEKNGDQQFDF 65
Query: 169 SGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGR 228
S +R Q V+ +K+ ++S H+CGGNVGDD ++P+P WV +++ +YF G
Sbjct: 66 SYAQRFAQSVKNAGMKMIPIISTHQCGGNVGDDCNVPIPSWVWN-QKSDDSLYFKSETGT 124
Query: 229 RNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRY 288
N E L L + Y + +F + +IA+I + GP GELRY
Sbjct: 125 VNKETL-------NPLASDVIRKEYGELYTAFAAAMKPY--KDVIAKIYLSGGPAGELRY 175
Query: 289 PTYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFWARGPGNAGSYNST------- 341
P+Y G YP G+FQ Y ++ A+++ L+ G+ N
Sbjct: 176 PSYTTSDGTGYPSRGKFQAYTEF--------AKSKFRLWVLNKYGSLNEVNKAWGTKLIS 227
Query: 342 -----PHETG--FFRDGGEYDSYYGRFFLNWYSQVLIDHGDRVFALANLAFEGTC---IS 391
P G F +G Y S YG+ +L WY +L +H + LA+ AF+ T I
Sbjct: 228 ELAILPPSDGEQFLMNG--YLSMYGKDYLEWYQGILENHTKLIGELAHNAFDTTFQVPIG 285
Query: 392 AKVS 395
AK++
Sbjct: 286 AKIA 289
>pdb|1VEO|A Chain A, Crystal Structure Analysis Of Y164fMALTOSE OF BACILLUS
Cereus Beta-Amylase At Ph 4.6
Length = 516
Score = 122 bits (305), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 90/304 (29%), Positives = 140/304 (46%), Gaps = 40/304 (13%)
Query: 109 PYVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNW 168
P Y+M PL I E+ + E N L+ K + VD WWG +E + Q +++
Sbjct: 9 PDYKAYLMAPLKKI---PEVTNWETFENDLRWAKQNGFYAITVDFWWGDMEKNGDQQFDF 65
Query: 169 SGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGR 228
S +R Q V+ +K+ ++S H+CGGNVGDD ++P+P WV +++ +YF G
Sbjct: 66 SYAQRFAQSVKNAGMKMIPIISTHQCGGNVGDDCNVPIPSWVWN-QKSDDSLYFKSETGT 124
Query: 229 RNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRY 288
N E L L + Y + +F + +IA+I + GP GELRY
Sbjct: 125 VNKETL-------NPLASDVIRKEYGELYTAFAAAMKPY--KDVIAKIFLSGGPAGELRY 175
Query: 289 PTYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFWARGPGNAGSYNST------- 341
P+Y G YP G+FQ Y ++ A+++ L+ G+ N
Sbjct: 176 PSYTTSDGTGYPSRGKFQAYTEF--------AKSKFRLWVLNKYGSLNEVNKAWGTKLIS 227
Query: 342 -----PHETG--FFRDGGEYDSYYGRFFLNWYSQVLIDHGDRVFALANLAFEGTC---IS 391
P G F +G Y S YG+ +L WY +L +H + LA+ AF+ T I
Sbjct: 228 ELAILPPSDGEQFLMNG--YLSMYGKDYLEWYQGILENHTKLIGELAHNAFDTTFQVPIG 285
Query: 392 AKVS 395
AK++
Sbjct: 286 AKIA 289
>pdb|1ITC|A Chain A, Beta-amylase From Bacillus Cereus Var. Mycoides Complexed
With Maltopentaose
Length = 516
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 89/304 (29%), Positives = 139/304 (45%), Gaps = 40/304 (13%)
Query: 109 PYVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNW 168
P Y+M PL I E+ + E N L+ K + VD WWG +E + Q +++
Sbjct: 9 PDYKAYLMAPLKKI---PEVTNWETFENDLRWAKQNGFYAITVDFWWGDMEKNGDQQFDF 65
Query: 169 SGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGR 228
S +R Q V+ +K+ ++S H+CGGNVGDD ++P+P WV +++ +YF G
Sbjct: 66 SYAQRFAQSVKNAGMKMIPIISTHQCGGNVGDDCNVPIPSWVWN-QKSDDSLYFKSETGT 124
Query: 229 RNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRY 288
N E L L + Y + +F + +IA+I + GP G LRY
Sbjct: 125 VNKETL-------NPLASDVIRKEYGELYTAFAAAMKPY--KDVIAKIYLSGGPAGALRY 175
Query: 289 PTYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFWARGPGNAGSYNST------- 341
P+Y G YP G+FQ Y ++ A+++ L+ G+ N
Sbjct: 176 PSYTTSDGTGYPSRGKFQAYTEF--------AKSKFRLWVLNKYGSLNEVNKAWGTKLIS 227
Query: 342 -----PHETG--FFRDGGEYDSYYGRFFLNWYSQVLIDHGDRVFALANLAFEGTC---IS 391
P G F +G Y S YG+ +L WY +L +H + LA+ AF+ T I
Sbjct: 228 ELAILPPSDGEQFLMNG--YLSMYGKDYLEWYQGILENHTKLIGELAHNAFDTTFQVPIG 285
Query: 392 AKVS 395
AK++
Sbjct: 286 AKIA 289
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 14/100 (14%)
Query: 232 ECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRYPTY 291
+C +W D R++ FD S G++ EI G ++Y +
Sbjct: 808 KCCSWSADGARIMVAAKNKIFLFDIHTS-----------GLLGEIHTGHH--STIQYCDF 854
Query: 292 PAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFWARG 331
++ + ++ C + + S SK A+ RGHL W G
Sbjct: 855 SPQNHLAVVALSQY-CVELWNTDSRSKVADCRGHLSWVHG 893
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 14/100 (14%)
Query: 232 ECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRYPTY 291
+C +W D ++++ + FD S G++AEI G ++Y +
Sbjct: 809 KCCSWSADGDKIIVAAKNKVLLFDIHTS-----------GLLAEIHTGHH--STIQYCDF 855
Query: 292 PAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFWARG 331
+ ++ C + + + S K A+ RGHL W G
Sbjct: 856 SPYDHLAVIALSQY-CVELWNIDSRLKVADCRGHLSWVHG 894
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 14/100 (14%)
Query: 232 ECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRYPTY 291
+C +W D ++++ + FD S G++AEI G ++Y +
Sbjct: 802 KCCSWSADGDKIIVAAKNKVLLFDIHTS-----------GLLAEIHTGHH--STIQYCDF 848
Query: 292 PAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFWARG 331
+ ++ C + + + S K A+ RGHL W G
Sbjct: 849 SPYDHLAVIALSQY-CVELWNIDSRLKVADCRGHLSWVHG 887
>pdb|2D7U|A Chain A, Crystal Structure Of Hypothetical Adenylosuccinate
Synthetase, Ph0438 From Pyrococcus Horikoshii Ot3
Length = 339
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 128 LVDPEILVNQLKILKSINV-DGVMVDCWWGIVEAHTPQVYNWSGY 171
LVDPE+ ++L+ LK NV D V +D I+E Q+ +GY
Sbjct: 75 LVDPEVFFHELEQLKDFNVKDRVGIDYRCAIIEEKHKQLDRTNGY 119
>pdb|3PRN|A Chain A, E1m, A104w Mutant Of Rh. Blastica Porin
Length = 289
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 18/37 (48%)
Query: 359 GRFFLNWYSQVLIDHGDRVFALANLAFEGTCISAKVS 395
G LNWY L GD+V N AF T + A VS
Sbjct: 206 GTVGLNWYDNGLSTAGDQVTLYGNYAFGATTVRAYVS 242
>pdb|1BH3|A Chain A, E1m, A116k Mutant Of Rh. Blastica Porin
Length = 289
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 18/37 (48%)
Query: 359 GRFFLNWYSQVLIDHGDRVFALANLAFEGTCISAKVS 395
G LNWY L GD+V N AF T + A VS
Sbjct: 206 GTVGLNWYDNGLSTAGDQVTLYGNYAFGATTVRAYVS 242
>pdb|1PRN|A Chain A, Refined Structure Of Porin From Rhodopseudomonas Blastica
And Comparison With The Porin From Rhodobacter
Capsulatus
Length = 289
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 18/37 (48%)
Query: 359 GRFFLNWYSQVLIDHGDRVFALANLAFEGTCISAKVS 395
G LNWY L GD+V N AF T + A VS
Sbjct: 206 GTVGLNWYDNGLSTAGDQVTLYGNYAFGATTVRAYVS 242
>pdb|5PRN|A Chain A, E1m, Y96w, S119w Mutant Of Rh. Blastica Porin
Length = 289
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 18/38 (47%)
Query: 359 GRFFLNWYSQVLIDHGDRVFALANLAFEGTCISAKVSH 396
G LNWY L GD+V N AF T + A VS
Sbjct: 206 GTVGLNWYDNGLSTAGDQVTLYGNYAFGATTVRAYVSD 243
>pdb|2PRN|A Chain A, Rhodopseudomonas Blastica Porin, Triple Mutant E1m, E99w,
A116w
Length = 289
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 18/37 (48%)
Query: 359 GRFFLNWYSQVLIDHGDRVFALANLAFEGTCISAKVS 395
G LNWY L GD+V N AF T + A VS
Sbjct: 206 GTVGLNWYDNGLSTAGDQVTLYGNYAFGATTVRAYVS 242
>pdb|6PRN|A Chain A, E1m, K50a, R52a Mutant Of Rh. Blastica Porin
Length = 289
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 18/37 (48%)
Query: 359 GRFFLNWYSQVLIDHGDRVFALANLAFEGTCISAKVS 395
G LNWY L GD+V N AF T + A VS
Sbjct: 206 GTVGLNWYDNGLSTAGDQVTLYGNYAFGATTVRAYVS 242
>pdb|7PRN|A Chain A, E1m, D97a, E99a Mutant Of Rh. Blastica Porin
Length = 289
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 18/37 (48%)
Query: 359 GRFFLNWYSQVLIDHGDRVFALANLAFEGTCISAKVS 395
G LNWY L GD+V N AF T + A VS
Sbjct: 206 GTVGLNWYDNGLSTAGDQVTLYGNYAFGATTVRAYVS 242
>pdb|8PRN|A Chain A, E1m, K50a, R52a, D97a, E99a Mutant Of Rh. Blastica Porin
Length = 289
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 18/37 (48%)
Query: 359 GRFFLNWYSQVLIDHGDRVFALANLAFEGTCISAKVS 395
G LNWY L GD+V N AF T + A VS
Sbjct: 206 GTVGLNWYDNGLSTAGDQVTLYGNYAFGATTVRAYVS 242
>pdb|1H6S|1 Chain 1, Asymmetric Conductivity Of Engineered Proteins
Length = 307
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 17/33 (51%)
Query: 363 LNWYSQVLIDHGDRVFALANLAFEGTCISAKVS 395
LNWY L GD+V N AF T + A VS
Sbjct: 228 LNWYDNGLSTAGDQVTLYGNYAFGATTVRAYVS 260
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.453
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,235,786
Number of Sequences: 62578
Number of extensions: 601514
Number of successful extensions: 1271
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1211
Number of HSP's gapped (non-prelim): 39
length of query: 402
length of database: 14,973,337
effective HSP length: 101
effective length of query: 301
effective length of database: 8,652,959
effective search space: 2604540659
effective search space used: 2604540659
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)