Query 015723
Match_columns 402
No_of_seqs 155 out of 232
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 08:58:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015723.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015723hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02905 beta-amylase 100.0 2E-145 3E-150 1130.1 34.9 361 42-402 182-556 (702)
2 PLN02705 beta-amylase 100.0 7E-141 1E-145 1093.0 33.1 332 71-402 206-538 (681)
3 PLN02803 beta-amylase 100.0 5E-134 1E-138 1032.2 34.3 296 106-402 81-380 (548)
4 PLN02801 beta-amylase 100.0 3E-134 7E-139 1029.6 31.7 295 107-402 12-308 (517)
5 PLN00197 beta-amylase; Provisi 100.0 8E-134 2E-138 1033.4 31.7 296 106-402 101-401 (573)
6 PLN02161 beta-amylase 100.0 1E-131 2E-136 1011.1 31.2 297 105-402 86-397 (531)
7 PF01373 Glyco_hydro_14: Glyco 100.0 6E-120 1E-124 908.4 21.6 274 114-402 1-284 (402)
8 PF02449 Glyco_hydro_42: Beta- 99.9 7.2E-26 1.6E-30 223.1 11.4 213 130-397 8-238 (374)
9 COG1874 LacA Beta-galactosidas 99.8 1.1E-19 2.4E-24 193.9 12.2 208 129-389 27-253 (673)
10 PF01301 Glyco_hydro_35: Glyco 99.0 2.8E-09 6E-14 105.4 11.4 78 129-211 21-101 (319)
11 PLN03059 beta-galactosidase; P 98.6 3.3E-07 7.2E-12 101.1 11.8 147 129-324 56-213 (840)
12 TIGR03356 BGL beta-galactosida 98.3 1.6E-06 3.5E-11 88.9 9.0 110 129-278 51-164 (427)
13 PF00232 Glyco_hydro_1: Glycos 98.1 8.4E-06 1.8E-10 83.9 8.8 100 129-268 55-158 (455)
14 PRK09852 cryptic 6-phospho-bet 97.8 8.5E-05 1.8E-09 77.8 9.6 111 129-278 68-183 (474)
15 KOG0496 Beta-galactosidase [Ca 97.8 8E-05 1.7E-09 80.5 8.5 143 129-281 46-203 (649)
16 PF00150 Cellulase: Cellulase 97.7 0.00015 3.2E-09 66.9 8.6 126 132-269 21-164 (281)
17 PRK15014 6-phospho-beta-glucos 97.7 0.00016 3.4E-09 75.8 9.0 111 129-278 66-181 (477)
18 PRK13511 6-phospho-beta-galact 97.6 0.00017 3.8E-09 75.0 8.4 109 129-278 51-163 (469)
19 PLN02814 beta-glucosidase 97.6 0.00022 4.7E-09 75.3 9.1 110 129-277 74-187 (504)
20 TIGR01233 lacG 6-phospho-beta- 97.6 0.00021 4.5E-09 74.6 8.7 110 128-278 49-162 (467)
21 PLN02849 beta-glucosidase 97.6 0.0003 6.5E-09 74.3 9.2 111 129-278 76-190 (503)
22 PLN02998 beta-glucosidase 97.5 0.00031 6.7E-09 74.1 9.1 111 129-278 79-193 (497)
23 PRK09589 celA 6-phospho-beta-g 97.4 0.00064 1.4E-08 71.2 8.8 111 129-278 64-179 (476)
24 PRK09593 arb 6-phospho-beta-gl 97.4 0.00075 1.6E-08 70.8 9.1 111 129-278 70-185 (478)
25 PF14871 GHL6: Hypothetical gl 97.3 0.004 8.7E-08 55.2 11.5 110 136-268 4-123 (132)
26 PF02638 DUF187: Glycosyl hydr 97.3 0.035 7.7E-07 55.2 19.2 204 128-397 15-232 (311)
27 COG2723 BglB Beta-glucosidase/ 97.0 0.0093 2E-07 63.0 12.4 112 129-279 56-172 (460)
28 smart00633 Glyco_10 Glycosyl h 96.5 0.015 3.2E-07 55.5 8.8 32 155-187 3-34 (254)
29 PF14488 DUF4434: Domain of un 95.9 0.086 1.9E-06 48.3 10.4 57 129-187 17-83 (166)
30 PF01229 Glyco_hydro_39: Glyco 95.3 0.053 1.1E-06 56.7 7.9 102 131-269 38-150 (486)
31 PF00331 Glyco_hydro_10: Glyco 95.0 0.079 1.7E-06 52.7 7.7 101 137-278 26-130 (320)
32 PF07745 Glyco_hydro_53: Glyco 93.9 0.1 2.2E-06 53.1 5.6 53 136-193 28-80 (332)
33 KOG0626 Beta-glucosidase, lact 93.5 0.31 6.8E-06 52.5 8.7 101 130-269 89-194 (524)
34 cd03465 URO-D_like The URO-D _ 93.5 0.47 1E-05 46.0 9.2 80 134-226 170-252 (330)
35 PRK11572 copper homeostasis pr 93.0 0.36 7.8E-06 47.5 7.7 70 110-191 51-124 (248)
36 PRK10785 maltodextrin glucosid 92.7 3 6.4E-05 45.2 14.6 156 130-324 177-364 (598)
37 TIGR02104 pulA_typeI pullulana 92.6 1.4 3.1E-05 47.6 12.1 63 132-194 164-255 (605)
38 cd03311 CIMS_C_terminal_like C 92.3 1.9 4.1E-05 42.5 11.7 131 132-264 155-295 (332)
39 PF03932 CutC: CutC family; I 91.6 0.33 7.1E-06 46.3 5.4 73 108-191 48-123 (201)
40 cd06592 GH31_glucosidase_KIAA1 90.6 3.5 7.5E-05 40.7 11.6 83 129-227 27-116 (303)
41 PF10566 Glyco_hydro_97: Glyco 90.5 0.62 1.3E-05 46.4 6.3 107 104-237 80-186 (273)
42 COG2730 BglC Endoglucanase [Ca 89.9 1.6 3.5E-05 44.9 8.9 71 135-208 76-154 (407)
43 PRK10150 beta-D-glucuronidase; 88.5 10 0.00022 40.9 14.0 45 129-187 310-354 (604)
44 cd04724 Tryptophan_synthase_al 88.3 5.9 0.00013 38.0 10.9 120 110-283 76-197 (242)
45 cd00465 URO-D_CIMS_like The UR 88.3 0.81 1.8E-05 43.9 5.1 61 133-197 145-210 (306)
46 PF03659 Glyco_hydro_71: Glyco 87.9 1.4 3E-05 45.6 6.9 53 130-191 15-67 (386)
47 PF00128 Alpha-amylase: Alpha 86.7 1.5 3.3E-05 40.4 5.8 64 130-196 2-80 (316)
48 PLN02229 alpha-galactosidase 86.5 1.6 3.4E-05 46.2 6.3 63 129-196 77-151 (427)
49 PF00290 Trp_syntA: Tryptophan 86.2 7.9 0.00017 38.3 10.7 112 107-264 84-197 (259)
50 PLN02361 alpha-amylase 85.8 2.8 6.1E-05 43.7 7.7 69 130-198 27-106 (401)
51 PF02836 Glyco_hydro_2_C: Glyc 85.6 2.8 6E-05 40.7 7.2 50 128-191 32-81 (298)
52 smart00642 Aamy Alpha-amylase 85.6 3.9 8.5E-05 37.3 7.8 68 129-196 16-97 (166)
53 TIGR01463 mtaA_cmuA methyltran 85.4 1.4 3.1E-05 43.5 5.1 58 135-196 183-243 (340)
54 PF02065 Melibiase: Melibiase; 85.3 5.6 0.00012 41.5 9.6 79 129-211 55-144 (394)
55 cd06593 GH31_xylosidase_YicI Y 84.8 5.9 0.00013 38.8 9.1 88 128-229 20-114 (308)
56 COG3142 CutC Uncharacterized p 84.6 2.6 5.7E-05 41.6 6.4 74 109-194 50-127 (241)
57 PRK01060 endonuclease IV; Prov 84.5 1.8 4E-05 41.0 5.3 64 116-186 1-64 (281)
58 PRK02412 aroD 3-dehydroquinate 84.1 12 0.00025 36.4 10.7 122 125-286 87-211 (253)
59 COG1649 Uncharacterized protei 83.6 12 0.00026 39.7 11.2 126 127-268 59-198 (418)
60 PRK13111 trpA tryptophan synth 83.6 5.5 0.00012 39.1 8.3 89 109-228 88-177 (258)
61 TIGR00433 bioB biotin syntheta 82.7 3 6.5E-05 40.0 6.0 53 135-189 123-178 (296)
62 TIGR03234 OH-pyruv-isom hydrox 82.4 8.4 0.00018 36.1 8.7 43 133-187 15-57 (254)
63 PHA00442 host recBCD nuclease 81.9 2.5 5.5E-05 33.4 4.2 27 136-181 30-56 (59)
64 COG3867 Arabinogalactan endo-1 81.3 3.6 7.8E-05 42.5 6.2 57 135-193 66-126 (403)
65 CHL00200 trpA tryptophan synth 81.0 15 0.00033 36.2 10.3 90 109-229 90-180 (263)
66 TIGR01515 branching_enzym alph 80.2 3.9 8.5E-05 44.5 6.5 56 130-191 154-228 (613)
67 PLN02591 tryptophan synthase 80.2 21 0.00045 35.1 10.9 89 109-228 77-166 (250)
68 TIGR02103 pullul_strch alpha-1 79.5 33 0.00073 39.7 13.7 138 170-350 405-556 (898)
69 PRK10658 putative alpha-glucos 79.5 15 0.00032 40.8 10.6 86 130-229 281-373 (665)
70 PRK10340 ebgA cryptic beta-D-g 79.3 9.3 0.0002 44.3 9.4 46 128-187 351-396 (1021)
71 cd02742 GH20_hexosaminidase Be 78.7 36 0.00078 33.7 12.1 125 126-267 10-183 (303)
72 PLN02808 alpha-galactosidase 77.9 6.8 0.00015 41.0 7.1 64 129-196 46-120 (386)
73 PF01487 DHquinase_I: Type I 3 77.4 31 0.00068 32.2 10.8 122 121-286 63-188 (224)
74 TIGR00542 hxl6Piso_put hexulos 77.4 4.8 0.0001 38.4 5.5 55 131-188 15-71 (279)
75 TIGR03217 4OH_2_O_val_ald 4-hy 77.1 14 0.00029 37.6 8.8 77 135-231 90-171 (333)
76 TIGR02402 trehalose_TreZ malto 76.7 6.5 0.00014 42.3 6.8 61 130-195 109-186 (542)
77 cd03308 CmuA_CmuC_like CmuA_Cm 76.2 4.3 9.3E-05 41.4 5.0 80 111-196 173-278 (378)
78 PF08821 CGGC: CGGC domain; I 76.0 9.2 0.0002 33.2 6.3 57 130-192 50-107 (107)
79 PF01261 AP_endonuc_2: Xylose 75.8 2.8 6.2E-05 36.6 3.2 45 138-187 1-45 (213)
80 TIGR01093 aroD 3-dehydroquinat 75.4 24 0.00053 33.4 9.6 115 132-287 78-194 (228)
81 PRK13125 trpA tryptophan synth 75.3 44 0.00096 32.0 11.4 89 110-227 74-162 (244)
82 PRK09856 fructoselysine 3-epim 75.3 8 0.00017 36.5 6.3 51 133-190 14-68 (275)
83 cd06565 GH20_GcnA-like Glycosy 75.1 48 0.001 33.0 11.9 62 127-188 12-79 (301)
84 PF10566 Glyco_hydro_97: Glyco 73.6 9 0.00019 38.3 6.4 69 129-198 29-101 (273)
85 PRK13209 L-xylulose 5-phosphat 73.4 7.5 0.00016 36.9 5.6 66 117-188 8-76 (283)
86 cd03307 Mta_CmuA_like MtaA_Cmu 73.0 4.8 0.0001 39.7 4.4 55 136-196 175-232 (326)
87 cd00502 DHQase_I Type I 3-dehy 72.7 32 0.0007 32.3 9.6 51 131-196 75-125 (225)
88 PLN02692 alpha-galactosidase 72.0 11 0.00024 39.8 6.9 144 129-301 70-231 (412)
89 TIGR00262 trpA tryptophan synt 71.8 27 0.00058 34.2 9.1 120 110-283 87-208 (256)
90 cd03309 CmuC_like CmuC_like. P 71.8 4.3 9.3E-05 40.9 3.8 54 139-196 162-222 (321)
91 PF03198 Glyco_hydro_72: Gluca 71.5 8.4 0.00018 39.5 5.7 53 127-190 48-100 (314)
92 COG3250 LacZ Beta-galactosidas 71.2 14 0.0003 42.2 7.8 48 126-187 315-362 (808)
93 TIGR02403 trehalose_treC alpha 71.0 12 0.00025 40.2 7.0 65 129-195 24-101 (543)
94 PRK06252 methylcobalamin:coenz 71.0 4.7 0.0001 39.7 3.8 56 135-196 183-241 (339)
95 PF01055 Glyco_hydro_31: Glyco 70.8 14 0.00031 37.7 7.3 85 128-228 39-133 (441)
96 PRK08195 4-hyroxy-2-oxovalerat 70.2 23 0.0005 36.0 8.5 76 136-231 92-172 (337)
97 TIGR02102 pullulan_Gpos pullul 69.7 8.9 0.00019 45.1 6.2 62 130-191 478-577 (1111)
98 PF14307 Glyco_tran_WbsX: Glyc 69.4 89 0.0019 31.6 12.5 30 127-156 53-82 (345)
99 cd06599 GH31_glycosidase_Aec37 69.3 28 0.00061 34.6 8.8 84 131-228 28-120 (317)
100 PRK12313 glycogen branching en 69.2 12 0.00025 40.9 6.6 58 129-191 167-242 (633)
101 COG3693 XynA Beta-1,4-xylanase 69.1 3.5 7.6E-05 42.6 2.5 53 149-212 60-115 (345)
102 cd07944 DRE_TIM_HOA_like 4-hyd 68.9 42 0.00091 32.8 9.8 77 135-231 85-166 (266)
103 PF01208 URO-D: Uroporphyrinog 67.9 7.1 0.00015 38.3 4.3 76 136-226 186-265 (343)
104 TIGR02456 treS_nterm trehalose 67.9 17 0.00037 38.8 7.4 65 129-196 25-103 (539)
105 PRK09441 cytoplasmic alpha-amy 67.8 14 0.00031 38.7 6.7 66 131-196 21-108 (479)
106 PLN02389 biotin synthase 67.7 11 0.00024 39.0 5.8 48 134-187 177-231 (379)
107 cd06568 GH20_SpHex_like A subg 67.6 95 0.0021 31.4 12.2 124 125-267 11-187 (329)
108 PRK13210 putative L-xylulose 5 67.5 14 0.00031 34.8 6.1 53 132-188 16-71 (284)
109 PF01791 DeoC: DeoC/LacD famil 67.3 7 0.00015 36.9 4.0 53 135-188 79-131 (236)
110 PF13200 DUF4015: Putative gly 66.9 68 0.0015 32.9 11.1 127 128-290 9-150 (316)
111 PRK09989 hypothetical protein; 66.2 15 0.00033 34.7 6.0 43 133-187 16-58 (258)
112 cd06604 GH31_glucosidase_II_Ma 64.6 39 0.00085 33.8 8.8 85 128-228 20-113 (339)
113 cd06564 GH20_DspB_LnbB-like Gl 64.6 77 0.0017 31.7 10.9 63 125-187 10-100 (326)
114 PLN00196 alpha-amylase; Provis 64.3 24 0.00051 37.2 7.5 64 130-196 42-119 (428)
115 cd00717 URO-D Uroporphyrinogen 64.3 11 0.00025 37.1 5.0 75 136-226 181-260 (335)
116 PLN02877 alpha-amylase/limit d 64.0 9.8 0.00021 44.2 5.0 59 133-191 374-488 (970)
117 PRK15108 biotin synthase; Prov 63.2 1.2E+02 0.0025 31.0 12.0 54 129-187 76-129 (345)
118 PRK14706 glycogen branching en 63.1 17 0.00037 40.1 6.5 59 128-191 163-239 (639)
119 PRK04302 triosephosphate isome 62.9 19 0.00041 33.9 5.9 44 136-187 76-119 (223)
120 cd06563 GH20_chitobiase-like T 62.7 1.1E+02 0.0024 31.1 11.7 85 125-224 11-126 (357)
121 cd07943 DRE_TIM_HOA 4-hydroxy- 62.3 36 0.00078 32.8 7.8 45 136-190 89-133 (263)
122 cd03310 CIMS_like CIMS - Cobal 62.0 31 0.00067 33.6 7.4 59 132-196 151-211 (321)
123 cd01299 Met_dep_hydrolase_A Me 61.6 28 0.0006 33.8 7.0 64 128-195 116-182 (342)
124 PRK10933 trehalose-6-phosphate 61.5 24 0.00052 38.1 7.1 65 129-195 30-107 (551)
125 PRK13398 3-deoxy-7-phosphohept 61.2 36 0.00078 33.7 7.8 72 119-192 28-99 (266)
126 PRK12677 xylose isomerase; Pro 60.4 14 0.0003 38.3 4.9 51 133-188 32-86 (384)
127 cd06562 GH20_HexA_HexB-like Be 60.0 1.4E+02 0.003 30.3 11.9 85 126-225 12-111 (348)
128 TIGR01464 hemE uroporphyrinoge 59.8 16 0.00034 36.3 5.1 75 137-226 185-263 (338)
129 PRK00042 tpiA triosephosphate 59.1 16 0.00035 35.8 4.9 44 137-190 78-125 (250)
130 PRK00115 hemE uroporphyrinogen 58.2 17 0.00037 36.3 5.1 76 135-226 189-269 (346)
131 TIGR03551 F420_cofH 7,8-dideme 58.1 8.5 0.00018 38.6 2.9 57 134-190 140-200 (343)
132 cd07491 Peptidases_S8_7 Peptid 58.1 65 0.0014 31.0 8.7 72 129-209 86-159 (247)
133 PRK04326 methionine synthase; 57.8 21 0.00045 35.3 5.5 78 132-226 161-239 (330)
134 TIGR01371 met_syn_B12ind 5-met 57.4 54 0.0012 37.0 9.2 121 132-265 575-710 (750)
135 cd06600 GH31_MGAM-like This fa 57.3 1.2E+02 0.0026 30.4 10.7 83 128-228 20-113 (317)
136 PRK07094 biotin synthase; Prov 57.3 14 0.0003 36.3 4.1 52 135-187 129-183 (323)
137 COG1856 Uncharacterized homolo 57.1 11 0.00025 37.6 3.5 52 135-187 100-154 (275)
138 PRK08508 biotin synthase; Prov 57.0 1.5E+02 0.0032 29.1 11.2 54 129-187 40-93 (279)
139 PLN03231 putative alpha-galact 56.8 20 0.00043 37.3 5.3 64 129-196 15-109 (357)
140 PRK09997 hydroxypyruvate isome 56.7 23 0.00049 33.5 5.4 42 133-186 16-57 (258)
141 PRK05402 glycogen branching en 56.5 28 0.00061 38.8 6.8 59 128-191 261-337 (726)
142 TIGR03699 mena_SCO4550 menaqui 55.6 9.5 0.00021 37.9 2.7 53 135-187 143-199 (340)
143 cd06591 GH31_xylosidase_XylS X 55.3 1.8E+02 0.0039 29.0 11.6 85 129-230 21-115 (319)
144 PLN02433 uroporphyrinogen deca 54.6 21 0.00046 35.8 5.0 74 137-226 184-262 (345)
145 PLN02960 alpha-amylase 54.6 25 0.00055 40.7 6.1 58 129-191 413-488 (897)
146 TIGR03849 arch_ComA phosphosul 54.6 30 0.00065 34.2 5.9 48 132-187 71-118 (237)
147 COG1082 IolE Sugar phosphate i 54.1 28 0.00061 32.4 5.5 50 131-187 14-63 (274)
148 PRK05222 5-methyltetrahydropte 54.0 18 0.0004 40.7 4.9 82 132-224 581-667 (758)
149 PLN02475 5-methyltetrahydropte 53.9 26 0.00057 39.7 6.1 82 132-226 586-674 (766)
150 PRK00957 methionine synthase; 53.8 25 0.00054 34.5 5.3 80 132-229 144-224 (305)
151 PRK08508 biotin synthase; Prov 53.6 18 0.00039 35.4 4.2 66 135-211 102-176 (279)
152 PRK08445 hypothetical protein; 53.4 16 0.00034 37.2 3.9 58 134-191 143-204 (348)
153 TIGR00423 radical SAM domain p 52.7 14 0.0003 36.5 3.3 54 134-187 106-163 (309)
154 TIGR02631 xylA_Arthro xylose i 52.5 18 0.00039 37.4 4.3 56 129-189 29-88 (382)
155 PRK09525 lacZ beta-D-galactosi 52.2 27 0.00058 40.8 5.9 47 128-188 367-413 (1027)
156 COG0620 MetE Methionine syntha 52.2 33 0.0007 35.1 5.9 64 132-201 158-227 (330)
157 PRK12595 bifunctional 3-deoxy- 51.5 53 0.0012 33.9 7.4 110 112-244 119-229 (360)
158 TIGR03700 mena_SCO4494 putativ 51.1 16 0.00034 37.0 3.5 56 134-189 149-208 (351)
159 PF02679 ComA: (2R)-phospho-3- 50.9 24 0.00053 34.9 4.6 67 108-187 65-131 (244)
160 PF13653 GDPD_2: Glycerophosph 50.7 16 0.00034 25.4 2.4 18 135-152 10-27 (30)
161 PF01717 Meth_synt_2: Cobalami 50.6 27 0.0006 34.4 5.0 86 132-229 154-245 (324)
162 cd06597 GH31_transferase_CtsY 50.1 90 0.002 31.6 8.7 63 128-190 20-106 (340)
163 PRK06256 biotin synthase; Vali 50.0 25 0.00054 34.8 4.6 47 135-187 152-205 (336)
164 cd03174 DRE_TIM_metallolyase D 49.8 1.4E+02 0.003 27.9 9.4 54 135-190 77-136 (265)
165 PRK09505 malS alpha-amylase; R 49.7 40 0.00087 37.8 6.6 62 130-191 228-314 (683)
166 PRK13655 phosphoenolpyruvate c 49.6 55 0.0012 35.7 7.3 56 167-228 216-275 (494)
167 PRK09936 hypothetical protein; 49.1 37 0.00081 34.7 5.7 52 129-187 35-90 (296)
168 TIGR02090 LEU1_arch isopropylm 49.0 62 0.0013 33.1 7.4 135 134-285 73-222 (363)
169 COG1523 PulA Type II secretory 48.9 33 0.00072 38.7 5.8 99 96-207 173-303 (697)
170 TIGR00419 tim triosephosphate 48.5 38 0.00082 32.5 5.4 45 137-191 73-117 (205)
171 cd06602 GH31_MGAM_SI_GAA This 48.3 1.4E+02 0.003 30.3 9.7 59 128-190 20-87 (339)
172 PRK03705 glycogen debranching 47.9 53 0.0012 36.6 7.2 53 137-191 184-264 (658)
173 PLN02784 alpha-amylase 47.8 43 0.00093 38.9 6.5 66 131-196 520-596 (894)
174 PRK14566 triosephosphate isome 47.7 32 0.00069 34.3 4.9 44 137-190 87-134 (260)
175 COG0149 TpiA Triosephosphate i 47.5 34 0.00075 34.1 5.1 44 137-190 80-127 (251)
176 PRK15108 biotin synthase; Prov 47.0 32 0.00069 35.0 4.9 51 135-186 136-188 (345)
177 cd07948 DRE_TIM_HCS Saccharomy 46.3 85 0.0018 30.8 7.6 69 135-213 74-146 (262)
178 COG1099 Predicted metal-depend 46.3 15 0.00031 36.7 2.3 65 135-209 14-81 (254)
179 TIGR02026 BchE magnesium-proto 46.2 54 0.0012 34.7 6.7 48 135-187 287-341 (497)
180 PRK12568 glycogen branching en 45.8 53 0.0011 37.3 6.8 61 128-191 265-341 (730)
181 PF13204 DUF4038: Protein of u 45.8 18 0.0004 35.7 3.0 62 130-191 28-110 (289)
182 PRK12858 tagatose 1,6-diphosph 45.6 50 0.0011 34.0 6.1 56 132-187 106-161 (340)
183 cd06589 GH31 The enzymes of gl 45.4 76 0.0017 30.6 7.1 71 128-215 20-99 (265)
184 PLN02561 triosephosphate isome 45.3 1.2E+02 0.0026 30.1 8.5 44 137-190 80-127 (253)
185 PRK06233 hypothetical protein; 45.3 42 0.00091 34.5 5.6 67 132-199 171-249 (372)
186 PRK14511 maltooligosyl trehalo 45.2 85 0.0018 36.5 8.4 65 130-195 18-95 (879)
187 PRK14565 triosephosphate isome 44.5 39 0.00085 33.2 4.9 44 137-190 77-124 (237)
188 PRK06520 5-methyltetrahydropte 44.3 43 0.00093 34.4 5.4 67 132-199 170-247 (368)
189 PRK12331 oxaloacetate decarbox 43.9 59 0.0013 34.6 6.5 52 130-191 94-145 (448)
190 PRK07360 FO synthase subunit 2 43.6 33 0.00072 35.0 4.5 57 134-190 162-222 (371)
191 PLN02447 1,4-alpha-glucan-bran 43.4 62 0.0013 36.9 6.9 62 128-194 246-326 (758)
192 cd07937 DRE_TIM_PC_TC_5S Pyruv 43.2 77 0.0017 31.1 6.8 51 130-190 89-139 (275)
193 cd07939 DRE_TIM_NifV Streptomy 43.2 1.1E+02 0.0025 29.3 7.9 53 135-187 72-128 (259)
194 COG2352 Ppc Phosphoenolpyruvat 43.1 23 0.0005 40.8 3.5 49 146-201 558-612 (910)
195 PLN02429 triosephosphate isome 43.1 41 0.00088 34.6 5.0 43 137-187 139-185 (315)
196 TIGR02401 trehalose_TreY malto 42.9 91 0.002 36.0 8.1 65 130-195 14-91 (825)
197 PRK09121 5-methyltetrahydropte 42.9 39 0.00085 34.3 4.9 121 132-264 156-296 (339)
198 PRK14510 putative bifunctional 42.7 1.8E+02 0.0038 35.0 10.7 62 136-197 191-276 (1221)
199 PTZ00445 p36-lilke protein; Pr 42.7 59 0.0013 32.0 5.8 60 128-187 25-96 (219)
200 TIGR03822 AblA_like_2 lysine-2 42.5 1.8E+02 0.0039 29.2 9.4 110 136-269 188-299 (321)
201 TIGR00539 hemN_rel putative ox 42.5 73 0.0016 32.1 6.7 48 135-187 100-155 (360)
202 PRK10426 alpha-glucosidase; Pr 42.0 1.3E+02 0.0029 33.4 9.0 87 131-229 220-317 (635)
203 smart00854 PGA_cap Bacterial c 41.8 70 0.0015 30.2 6.1 56 130-192 158-213 (239)
204 smart00518 AP2Ec AP endonuclea 41.7 69 0.0015 30.3 6.0 51 133-185 11-61 (273)
205 smart00481 POLIIIAc DNA polyme 41.6 86 0.0019 23.7 5.5 44 133-187 16-59 (67)
206 PTZ00333 triosephosphate isome 40.2 65 0.0014 31.9 5.8 44 137-190 81-128 (255)
207 PRK09875 putative hydrolase; P 39.9 1E+02 0.0022 30.9 7.2 67 125-211 27-94 (292)
208 COG1619 LdcA Uncharacterized p 39.9 88 0.0019 32.1 6.8 92 122-222 16-107 (313)
209 PTZ00413 lipoate synthase; Pro 39.5 2.4E+02 0.0053 30.1 10.1 125 128-281 176-306 (398)
210 PF01261 AP_endonuc_2: Xylose 39.4 30 0.00065 30.2 3.0 63 131-197 70-136 (213)
211 cd00311 TIM Triosephosphate is 39.3 68 0.0015 31.4 5.7 44 137-190 76-123 (242)
212 PRK09240 thiH thiamine biosynt 39.0 64 0.0014 33.0 5.7 46 135-185 163-219 (371)
213 cd00958 DhnA Class I fructose- 38.8 45 0.00097 31.2 4.3 54 130-187 74-127 (235)
214 PF00728 Glyco_hydro_20: Glyco 38.0 2.6E+02 0.0056 27.4 9.6 66 125-190 11-94 (351)
215 TIGR02100 glgX_debranch glycog 38.0 56 0.0012 36.5 5.5 64 132-195 182-272 (688)
216 PRK15452 putative protease; Pr 37.9 35 0.00076 36.2 3.8 37 110-151 59-95 (443)
217 TIGR03471 HpnJ hopanoid biosyn 37.9 84 0.0018 32.8 6.5 48 135-187 287-341 (472)
218 PRK15492 triosephosphate isome 37.7 59 0.0013 32.3 5.1 44 137-190 86-133 (260)
219 PF04476 DUF556: Protein of un 37.5 40 0.00087 33.4 3.8 46 138-187 137-185 (235)
220 PRK14705 glycogen branching en 37.4 62 0.0013 38.8 5.9 54 132-190 765-836 (1224)
221 PRK14581 hmsF outer membrane N 37.3 33 0.00071 38.5 3.6 58 129-187 69-137 (672)
222 PRK05799 coproporphyrinogen II 36.9 85 0.0019 31.6 6.2 44 136-184 100-150 (374)
223 PF05706 CDKN3: Cyclin-depende 36.8 26 0.00057 33.0 2.4 48 131-186 57-104 (168)
224 PF13380 CoA_binding_2: CoA bi 36.8 95 0.0021 26.6 5.6 45 128-186 62-106 (116)
225 PRK13210 putative L-xylulose 5 36.6 72 0.0016 30.1 5.3 59 132-192 94-154 (284)
226 PF00682 HMGL-like: HMGL-like 36.5 2.1E+02 0.0045 26.7 8.3 108 130-266 65-181 (237)
227 TIGR00676 fadh2 5,10-methylene 36.4 4.2E+02 0.009 26.0 10.7 153 130-324 13-183 (272)
228 TIGR03586 PseI pseudaminic aci 36.0 95 0.0021 31.9 6.3 72 112-187 1-95 (327)
229 PLN02389 biotin synthase 35.8 4.5E+02 0.0098 27.4 11.3 56 128-186 115-170 (379)
230 cd06595 GH31_xylosidase_XylS-l 35.6 1.2E+02 0.0026 29.9 6.9 61 129-189 22-94 (292)
231 PF03786 UxuA: D-mannonate deh 35.6 64 0.0014 33.7 5.1 50 137-190 16-66 (351)
232 PLN02899 alpha-galactosidase 35.4 50 0.0011 37.0 4.5 54 140-197 60-137 (633)
233 COG0159 TrpA Tryptophan syntha 35.4 2.1E+02 0.0045 28.9 8.4 92 109-231 93-185 (265)
234 PF04187 DUF399: Protein of un 35.4 27 0.0006 33.1 2.3 22 166-187 86-107 (213)
235 PTZ00170 D-ribulose-5-phosphat 35.3 86 0.0019 30.0 5.6 45 130-182 17-63 (228)
236 cd06598 GH31_transferase_CtsZ 35.3 1.1E+02 0.0024 30.5 6.6 63 128-190 20-91 (317)
237 COG0407 HemE Uroporphyrinogen- 35.0 69 0.0015 33.3 5.2 58 136-196 193-251 (352)
238 PF14587 Glyco_hydr_30_2: O-Gl 34.8 1.9E+02 0.0041 30.7 8.4 116 162-324 94-217 (384)
239 TIGR02751 PEPCase_arch phospho 34.7 69 0.0015 35.0 5.3 55 167-227 224-282 (506)
240 cd06570 GH20_chitobiase-like_1 34.6 5E+02 0.011 26.3 11.9 124 125-269 11-147 (311)
241 PRK03906 mannonate dehydratase 34.3 66 0.0014 33.7 5.0 53 126-186 37-100 (385)
242 PRK00111 hypothetical protein; 33.7 68 0.0015 30.6 4.6 47 251-304 128-175 (180)
243 PF02126 PTE: Phosphotriestera 33.7 1.2E+02 0.0026 30.7 6.6 63 130-211 36-98 (308)
244 cd00019 AP2Ec AP endonuclease 33.6 1.2E+02 0.0026 28.9 6.3 52 132-185 10-62 (279)
245 cd07381 MPP_CapA CapA and rela 33.5 1.5E+02 0.0033 27.8 6.9 56 130-192 160-215 (239)
246 TIGR02529 EutJ ethanolamine ut 33.5 1.2E+02 0.0026 29.1 6.3 64 115-190 24-96 (239)
247 PTZ00398 phosphoenolpyruvate c 33.4 42 0.0009 39.3 3.7 54 144-201 616-672 (974)
248 PF01522 Polysacc_deac_1: Poly 33.4 44 0.00095 27.2 2.9 19 168-186 17-35 (123)
249 TIGR00542 hxl6Piso_put hexulos 33.2 81 0.0017 30.1 5.1 55 132-186 94-150 (279)
250 PRK14040 oxaloacetate decarbox 33.2 1.2E+02 0.0027 33.5 7.1 52 130-191 95-146 (593)
251 COG1060 ThiH Thiamine biosynth 33.1 61 0.0013 33.8 4.5 59 133-191 159-221 (370)
252 TIGR02351 thiH thiazole biosyn 32.9 60 0.0013 33.1 4.4 45 135-184 162-216 (366)
253 PF05378 Hydant_A_N: Hydantoin 32.7 98 0.0021 28.6 5.4 45 130-182 132-176 (176)
254 cd00287 ribokinase_pfkB_like r 32.7 1.9E+02 0.0041 25.1 7.0 50 135-187 40-89 (196)
255 cd02801 DUS_like_FMN Dihydrour 32.5 77 0.0017 29.2 4.7 52 129-181 64-121 (231)
256 PF07488 Glyco_hydro_67M: Glyc 32.1 1.1E+02 0.0023 32.0 5.9 78 99-192 34-115 (328)
257 PRK13347 coproporphyrinogen II 32.0 1.2E+02 0.0026 31.8 6.5 52 135-191 152-211 (453)
258 PRK08446 coproporphyrinogen II 31.8 71 0.0015 32.2 4.7 50 135-184 98-149 (350)
259 PRK00009 phosphoenolpyruvate c 31.7 41 0.00089 39.0 3.3 33 167-202 581-616 (911)
260 PRK08673 3-deoxy-7-phosphohept 31.7 1.1E+02 0.0023 31.7 5.9 64 119-187 94-162 (335)
261 COG1243 ELP3 Histone acetyltra 31.6 74 0.0016 34.8 4.9 88 132-224 195-294 (515)
262 TIGR01210 conserved hypothetic 31.0 77 0.0017 31.8 4.7 56 135-190 117-176 (313)
263 cd00530 PTE Phosphotriesterase 30.9 1.5E+02 0.0033 28.3 6.5 56 128-194 28-84 (293)
264 PF04055 Radical_SAM: Radical 30.8 95 0.002 25.6 4.6 50 135-184 90-142 (166)
265 TIGR01211 ELP3 histone acetylt 30.5 81 0.0018 34.3 5.1 54 134-187 205-260 (522)
266 TIGR00695 uxuA mannonate dehyd 30.3 94 0.002 32.9 5.3 52 126-185 37-99 (394)
267 PRK05904 coproporphyrinogen II 30.2 82 0.0018 32.1 4.8 55 135-189 103-160 (353)
268 TIGR01108 oadA oxaloacetate de 30.0 1.5E+02 0.0032 32.8 7.0 52 130-191 89-140 (582)
269 PRK03195 hypothetical protein; 29.9 1.2E+02 0.0025 29.1 5.4 109 162-304 66-181 (186)
270 cd04740 DHOD_1B_like Dihydroor 29.6 1.5E+02 0.0033 28.8 6.4 57 130-187 100-159 (296)
271 TIGR00620 sporelyase spore pho 29.5 99 0.0022 29.9 5.0 32 168-210 70-101 (199)
272 PRK02227 hypothetical protein; 29.4 80 0.0017 31.4 4.4 48 136-187 135-185 (238)
273 PRK05926 hypothetical protein; 29.4 50 0.0011 34.1 3.2 58 134-191 168-229 (370)
274 cd08572 GDPD_GDE5_like Glycero 29.4 1.5E+02 0.0032 29.4 6.3 68 134-225 225-292 (293)
275 COG0502 BioB Biotin synthase a 29.3 51 0.0011 34.2 3.2 54 135-199 144-202 (335)
276 PRK09856 fructoselysine 3-epim 29.3 81 0.0018 29.7 4.4 54 132-185 90-145 (275)
277 PF11193 DUF2812: Protein of u 29.3 2.8E+02 0.006 23.3 7.2 57 130-186 2-68 (115)
278 cd02809 alpha_hydroxyacid_oxid 29.0 4.1E+02 0.009 26.2 9.4 129 130-268 127-286 (299)
279 cd06594 GH31_glucosidase_YihQ 28.9 5.6E+02 0.012 25.7 10.4 86 130-229 21-120 (317)
280 cd04908 ACT_Bt0572_1 N-termina 28.8 2E+02 0.0044 21.6 5.7 53 130-186 11-65 (66)
281 PRK13397 3-deoxy-7-phosphohept 28.6 1.6E+02 0.0034 29.4 6.3 105 124-244 21-126 (250)
282 cd08179 NADPH_BDH NADPH-depend 28.5 83 0.0018 32.0 4.5 60 133-204 40-99 (375)
283 PRK08599 coproporphyrinogen II 28.4 1.2E+02 0.0025 30.7 5.6 49 135-184 100-151 (377)
284 cd06603 GH31_GANC_GANAB_alpha 28.1 1.5E+02 0.0033 29.7 6.3 58 128-189 20-84 (339)
285 PF04909 Amidohydro_2: Amidohy 27.9 1.1E+02 0.0023 27.9 4.8 83 131-223 84-168 (273)
286 PF01136 Peptidase_U32: Peptid 27.8 60 0.0013 30.2 3.2 23 132-154 2-24 (233)
287 PRK13209 L-xylulose 5-phosphat 27.7 95 0.0021 29.5 4.6 53 132-185 99-154 (283)
288 cd00945 Aldolase_Class_I Class 27.6 1.2E+02 0.0025 26.6 4.8 53 130-187 63-118 (201)
289 cd03319 L-Ala-DL-Glu_epimerase 27.6 77 0.0017 31.1 4.0 57 127-199 236-293 (316)
290 TIGR00538 hemN oxygen-independ 27.4 1.4E+02 0.0031 31.2 6.1 50 135-191 151-212 (455)
291 TIGR03128 RuMP_HxlA 3-hexulose 27.3 1.5E+02 0.0032 27.1 5.5 43 137-190 68-110 (206)
292 PRK05660 HemN family oxidoredu 27.3 1.3E+02 0.0028 30.8 5.7 47 134-185 106-159 (378)
293 PRK14507 putative bifunctional 27.3 2E+02 0.0044 35.9 8.0 65 130-195 756-833 (1693)
294 PF08267 Meth_synt_1: Cobalami 27.2 75 0.0016 32.4 3.9 34 135-182 42-75 (310)
295 PRK05628 coproporphyrinogen II 27.1 1E+02 0.0022 31.3 4.8 52 135-187 108-163 (375)
296 COG2876 AroA 3-deoxy-D-arabino 26.9 1.4E+02 0.003 30.6 5.6 54 130-183 227-282 (286)
297 PRK11858 aksA trans-homoaconit 26.7 3.7E+02 0.008 27.7 8.9 54 134-187 77-134 (378)
298 cd08597 PI-PLCc_PRIP_metazoa C 26.6 1.3E+02 0.0027 30.3 5.3 63 126-192 24-98 (260)
299 TIGR00010 hydrolase, TatD fami 26.5 1.9E+02 0.004 26.5 6.1 46 134-192 17-62 (252)
300 TIGR00559 pdxJ pyridoxine 5'-p 26.4 78 0.0017 31.5 3.8 53 135-187 134-187 (237)
301 PRK08208 coproporphyrinogen II 26.2 1.4E+02 0.0029 31.2 5.7 50 135-185 141-193 (430)
302 PRK14567 triosephosphate isome 26.2 1.1E+02 0.0024 30.4 4.9 44 137-190 77-124 (253)
303 TIGR00677 fadh2_euk methylenet 26.1 1.8E+02 0.0039 28.9 6.3 70 134-215 147-225 (281)
304 cd08627 PI-PLCc_gamma1 Catalyt 25.9 62 0.0014 31.9 3.0 31 125-156 23-53 (229)
305 PF11340 DUF3142: Protein of u 25.8 4.2E+02 0.009 25.5 8.3 90 132-263 27-126 (181)
306 PRK06052 5-methyltetrahydropte 25.7 1.7E+02 0.0037 30.7 6.2 85 103-192 105-206 (344)
307 PLN02540 methylenetetrahydrofo 25.7 1.5E+02 0.0034 32.8 6.2 73 132-215 153-233 (565)
308 PLN03030 cationic peroxidase; 25.5 49 0.0011 34.1 2.3 46 236-287 262-317 (324)
309 cd06340 PBP1_ABC_ligand_bindin 25.4 4.8E+02 0.01 25.4 9.0 45 133-190 187-231 (347)
310 COG1609 PurR Transcriptional r 25.2 2.5E+02 0.0054 28.0 7.2 104 130-267 99-204 (333)
311 TIGR01917 gly_red_sel_B glycin 25.1 73 0.0016 34.2 3.5 10 113-122 283-292 (431)
312 COG2159 Predicted metal-depend 24.9 3.1E+02 0.0068 27.3 7.8 79 133-222 114-195 (293)
313 cd08556 GDPD Glycerophosphodie 24.9 1.4E+02 0.003 26.1 4.7 59 139-225 131-189 (189)
314 COG2089 SpsE Sialic acid synth 24.9 69 0.0015 33.5 3.2 70 112-185 14-106 (347)
315 PRK09249 coproporphyrinogen II 24.7 2.3E+02 0.0049 29.7 7.0 44 135-183 151-201 (453)
316 PF05913 DUF871: Bacterial pro 24.5 1.4E+02 0.0031 31.0 5.4 57 130-190 12-68 (357)
317 cd08560 GDPD_EcGlpQ_like_1 Gly 24.4 98 0.0021 32.0 4.2 50 134-187 247-296 (356)
318 PRK08207 coproporphyrinogen II 24.3 2.1E+02 0.0046 30.7 6.8 50 135-185 269-322 (488)
319 PF01026 TatD_DNase: TatD rela 24.2 1.9E+02 0.004 27.6 5.8 47 134-193 16-63 (255)
320 TIGR01531 glyc_debranch glycog 24.1 2.4E+02 0.0053 34.7 7.8 95 116-226 112-229 (1464)
321 smart00729 Elp3 Elongator prot 24.0 1.4E+02 0.003 25.7 4.6 52 135-187 100-155 (216)
322 PF02906 Fe_hyd_lg_C: Iron onl 23.9 72 0.0016 31.4 3.0 86 134-261 27-113 (285)
323 COG1501 Alpha-glucosidases, fa 23.8 2.3E+02 0.0049 32.6 7.2 61 128-190 276-342 (772)
324 cd04241 AAK_FomA-like AAK_FomA 23.7 1.2E+02 0.0026 28.8 4.4 36 161-200 15-51 (252)
325 PRK14042 pyruvate carboxylase 23.6 2.4E+02 0.0051 31.5 7.2 20 165-184 150-169 (596)
326 cd07484 Peptidases_S8_Thermita 23.4 5E+02 0.011 24.3 8.5 64 129-208 109-172 (260)
327 PRK13962 bifunctional phosphog 23.3 1.2E+02 0.0027 34.0 5.0 45 136-190 472-520 (645)
328 cd04882 ACT_Bt0572_2 C-termina 23.1 1.4E+02 0.0031 21.5 3.8 54 130-185 9-64 (65)
329 COG0366 AmyA Glycosidases [Car 23.0 1.5E+02 0.0032 30.1 5.2 60 129-191 26-99 (505)
330 cd08592 PI-PLCc_gamma Catalyti 22.9 75 0.0016 31.3 2.9 31 125-156 23-53 (229)
331 PF03447 NAD_binding_3: Homose 22.8 1.1E+02 0.0023 25.5 3.5 57 118-186 59-115 (117)
332 TIGR03234 OH-pyruv-isom hydrox 22.7 1.9E+02 0.004 27.1 5.4 54 132-187 84-141 (254)
333 cd02810 DHOD_DHPD_FMN Dihydroo 22.7 2.4E+02 0.0053 27.1 6.4 52 130-181 109-160 (289)
334 TIGR03569 NeuB_NnaB N-acetylne 22.7 99 0.0022 31.7 3.9 57 131-187 15-94 (329)
335 cd01311 PDC_hydrolase 2-pyrone 22.7 1.8E+02 0.004 27.7 5.5 46 135-187 83-128 (263)
336 PRK12581 oxaloacetate decarbox 22.7 3.3E+02 0.0071 29.6 7.8 71 126-212 126-196 (468)
337 cd07941 DRE_TIM_LeuA3 Desulfob 22.5 1.1E+02 0.0024 29.9 4.0 52 136-187 82-137 (273)
338 TIGR01163 rpe ribulose-phospha 22.4 2.7E+02 0.0057 25.2 6.2 24 129-152 8-31 (210)
339 PRK10528 multifunctional acyl- 22.1 1.8E+02 0.0039 26.3 5.1 78 169-269 95-188 (191)
340 cd01298 ATZ_TRZ_like TRZ/ATZ f 22.1 2.3E+02 0.005 27.9 6.2 44 144-196 174-217 (411)
341 KOG4013 Predicted Cu2+ homeost 22.0 1.1E+02 0.0023 30.4 3.7 70 109-193 58-130 (255)
342 PRK05927 hypothetical protein; 21.9 79 0.0017 32.4 3.0 59 132-190 144-206 (350)
343 cd08594 PI-PLCc_eta Catalytic 21.8 2.5E+02 0.0053 27.8 6.2 64 126-192 24-98 (227)
344 PRK14905 triosephosphate isome 21.6 1.6E+02 0.0034 30.7 5.1 44 137-190 87-134 (355)
345 PRK09282 pyruvate carboxylase 21.6 2.4E+02 0.0052 31.3 6.7 52 130-191 94-145 (592)
346 cd08629 PI-PLCc_delta1 Catalyt 21.6 2.4E+02 0.0052 28.4 6.1 64 126-192 24-98 (258)
347 cd04726 KGPDC_HPS 3-Keto-L-gul 21.5 3E+02 0.0066 24.8 6.4 42 136-188 68-109 (202)
348 COG2179 Predicted hydrolase of 21.5 2.1E+02 0.0044 27.5 5.4 53 133-187 15-67 (175)
349 PF07615 Ykof: YKOF-related Fa 21.5 1.8E+02 0.0039 23.9 4.4 56 132-190 18-73 (81)
350 cd06522 GH25_AtlA-like AtlA is 21.4 2.4E+02 0.0051 26.1 5.7 47 136-189 16-62 (192)
351 cd08178 AAD_C C-terminal alcoh 21.4 1.2E+02 0.0027 31.0 4.3 59 133-203 37-95 (398)
352 smart00729 Elp3 Elongator prot 21.3 4E+02 0.0086 22.8 6.8 56 130-191 134-189 (216)
353 PRK09993 C-lysozyme inhibitor; 21.3 72 0.0016 29.9 2.3 30 221-250 105-135 (153)
354 TIGR00423 radical SAM domain p 21.2 2.6E+02 0.0057 27.6 6.4 52 129-187 36-87 (309)
355 PRK11657 dsbG disulfide isomer 21.2 1.1E+02 0.0023 29.9 3.6 45 173-229 25-69 (251)
356 cd08598 PI-PLC1c_yeast Catalyt 21.1 1.8E+02 0.004 28.7 5.2 64 125-192 23-98 (231)
357 PF13407 Peripla_BP_4: Peripla 21.1 2.5E+02 0.0054 25.5 5.8 105 129-266 39-150 (257)
358 cd08212 RuBisCO_large_I Ribulo 21.0 2E+02 0.0044 30.9 5.9 52 130-192 224-275 (450)
359 PF11871 DUF3391: Domain of un 21.0 95 0.0021 26.2 2.9 19 135-153 38-56 (128)
360 cd08631 PI-PLCc_delta4 Catalyt 21.0 2.6E+02 0.0056 28.2 6.2 65 125-192 23-98 (258)
361 PRK12330 oxaloacetate decarbox 21.0 3.4E+02 0.0074 29.7 7.6 77 119-211 111-187 (499)
362 PRK13361 molybdenum cofactor b 20.8 2.7E+02 0.0059 27.8 6.4 49 133-186 102-158 (329)
363 TIGR00222 panB 3-methyl-2-oxob 20.8 2.8E+02 0.006 27.9 6.4 43 130-186 91-133 (263)
364 cd07493 Peptidases_S8_9 Peptid 20.8 3.9E+02 0.0085 25.2 7.3 71 129-208 88-169 (261)
365 PRK14582 pgaB outer membrane N 20.8 1.2E+02 0.0026 34.2 4.3 59 129-187 69-137 (671)
366 PRK08125 bifunctional UDP-gluc 20.7 3.8E+02 0.0082 29.4 8.0 99 133-251 11-118 (660)
367 PRK05301 pyrroloquinoline quin 20.7 3E+02 0.0065 27.7 6.8 60 123-191 96-163 (378)
368 cd08625 PI-PLCc_beta3 Catalyti 20.6 2.4E+02 0.0053 28.2 6.0 67 125-192 23-100 (258)
369 TIGR01918 various_sel_PB selen 20.4 96 0.0021 33.3 3.3 59 113-187 283-341 (431)
370 PRK06988 putative formyltransf 20.4 3.9E+02 0.0084 26.9 7.5 97 135-251 15-120 (312)
371 PRK08005 epimerase; Validated 20.4 1.2E+02 0.0025 29.3 3.6 44 130-181 11-56 (210)
372 PRK07379 coproporphyrinogen II 20.4 1.5E+02 0.0033 30.6 4.7 45 135-184 115-166 (400)
373 PF04015 DUF362: Domain of unk 20.4 1.1E+02 0.0024 28.1 3.4 58 126-187 17-75 (206)
374 PRK09997 hydroxypyruvate isome 20.4 2.3E+02 0.0049 26.8 5.5 51 132-185 85-140 (258)
375 TIGR01235 pyruv_carbox pyruvat 20.4 3.4E+02 0.0073 32.6 8.0 80 119-210 639-720 (1143)
376 cd06359 PBP1_Nba_like Type I p 20.3 5E+02 0.011 24.9 8.0 43 132-187 173-217 (333)
377 PF01183 Glyco_hydro_25: Glyco 20.3 1.5E+02 0.0034 26.6 4.2 109 138-269 12-120 (181)
378 cd02871 GH18_chitinase_D-like 20.2 1.6E+02 0.0035 29.2 4.7 44 108-151 236-292 (312)
379 cd02072 Glm_B12_BD B12 binding 20.1 40 0.00087 30.2 0.4 65 75-150 49-113 (128)
380 COG2200 Rtn c-di-GMP phosphodi 20.1 1.7E+02 0.0038 28.2 4.8 48 136-187 162-211 (256)
No 1
>PLN02905 beta-amylase
Probab=100.00 E-value=1.6e-145 Score=1130.06 Aligned_cols=361 Identities=72% Similarity=1.323 Sum_probs=349.2
Q ss_pred cccceecceecccccccc-------------cccchhhhcc-cccccccCCCCCCCCcccccchhhccCCCCCCcccCCC
Q 015723 42 HSLTYCNVTYCNACRFKR-------------TQFRTLAAIG-EWEEETEDDPHGGDSVDAADDMKAVHLPPKLPERDFAG 107 (402)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (402)
-|.+|+|++++|+|++|+ .++..+++|. +++..+++..++++|++|++++++.|++...+++++++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 261 (702)
T PLN02905 182 VSSGYRSSVEYNACRMKGVFVPASSPYDVSPSQSSELVVVMGDRGSQNENHGLIGGSVDAINSKQILDIPPKLTERDFAG 261 (702)
T ss_pred cccccccccccchhhhccccccCCCccccccCCCCcceeEeecccccccccCCccCcccccchhhhhhhhcccccccccC
Confidence 478999999999999999 4444555554 77788888888889999997777779999999999999
Q ss_pred CCCccEEEeeccceeeCCCcccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEE
Q 015723 108 TPYVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQV 187 (402)
Q Consensus 108 ~~~vpvyVMlPLd~V~~~~~~~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~v 187 (402)
+++||||||||||+|+++|+++++++|+++|++||++||||||||||||+||+++|++|||++|++||+|||++||||||
T Consensus 262 ~~~VpVyVMLPLd~V~~~~~l~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsgY~~L~~mvr~~GLKlqv 341 (702)
T PLN02905 262 TPYVPVYVMLPLGVINMKCELADPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWNGYKRLFQMVRELKLKLQV 341 (702)
T ss_pred CCceeEEEEeecceecCCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcHHHHHHHHHHHHcCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeccCCCCCCCccccCChhhhhhhhcCCCeEeeCCCCCccccceecccCcccccCCCCchHHHHHHHHHHHHHHhhh
Q 015723 188 VMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEF 267 (402)
Q Consensus 188 vmsFHqCGgNVGDt~~IpLP~WV~~~g~~~PDI~~tDr~G~rn~E~LSl~~D~~pvl~GRtp~~~Y~dfm~sF~~~fa~~ 267 (402)
|||||||||||||+|+||||+||++++++|||||||||+|+||+||||||+|++|||+||||+|+|+|||+|||++|++|
T Consensus 342 VMSFHqCGGNVGD~~~IPLP~WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~f 421 (702)
T PLN02905 342 VMSFHECGGNVGDDVCIPLPHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFDEF 421 (702)
T ss_pred EEEecccCCCCCCcccccCCHHHHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCceEEEEEeeccCCCccCCCCCCCCCCCccCCCcccccccHHHHHHHHHHHHHhCCcccCCCCCCCCCCCCCCCCCCc
Q 015723 268 FVDGIIAEIEVGLGPCGELRYPTYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFWARGPGNAGSYNSTPHETGF 347 (402)
Q Consensus 268 ~~~~vI~eI~VGlGP~GELRYPSyp~~~gW~~pGiGEFQCYDk~~~~~fr~~a~~kgn~~WG~gP~nag~yn~~P~~t~F 347 (402)
|++++|+||+|||||||||||||||+..||+||||||||||||||+++||++|+++||++||+||||||+||++|++|+|
T Consensus 422 l~~g~I~eI~VGLGPaGELRYPSYp~s~GW~fPGiGEFQCYDKymla~Lk~aA~a~GhpeWG~gP~dAG~YN~~P~~TgF 501 (702)
T PLN02905 422 FEDGVISMVEVGLGPCGELRYPSCPVKHGWRYPGIGEFQCYDQYLLKSLRKAAEARGHLFWARGPDNTGSYNSQPHETGF 501 (702)
T ss_pred hcCCceEEEEeccCCCccccCCCCcCcCCCCCCCcceeeeccHHHHHHHHHHHHHhCcHhhccCCCCCCccCCCCCCCCC
Confidence 99899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCccccccccchHHHhHHHHHhHHHHHHHHHHHhcCCceeeEEEeeeeeecC
Q 015723 348 FRDGGEYDSYYGRFFLNWYSQVLIDHGDRVFALANLAFEGTCISAKVSHQNFFFF 402 (402)
Q Consensus 348 F~~gg~~~S~YG~fFL~WYs~~Li~HgdrvL~~A~~~F~~~~l~aKV~GIHWwY~ 402 (402)
|+++|+|+|+||||||+|||++||+||||||++|+.+|++++|+||||||||||+
T Consensus 502 F~~~Gsw~S~YGkFFLsWYS~~Ll~HGDrVLs~A~~vF~g~~LaaKVaGIHWWY~ 556 (702)
T PLN02905 502 FCDGGDYDGYYGRFFLNWYSQVLVDHGDRVLSLAKLAFEGTCIAAKLPGVHWWYK 556 (702)
T ss_pred CCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeccccccCC
Confidence 9999999999999999999999999999999999999999999999999999996
No 2
>PLN02705 beta-amylase
Probab=100.00 E-value=6.9e-141 Score=1092.98 Aligned_cols=332 Identities=60% Similarity=1.119 Sum_probs=326.8
Q ss_pred ccccccCCCCCCCCcccc-cchhhccCCCCCCcccCCCCCCccEEEeeccceeeCCCcccChHHHHHHHHHHHHcCcceE
Q 015723 71 WEEETEDDPHGGDSVDAA-DDMKAVHLPPKLPERDFAGTPYVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGV 149 (402)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~vpvyVMlPLd~V~~~~~~~~~~~l~~dL~~LK~aGVdgV 149 (402)
.+++.+.+..+++|++|+ +||+++++++..++++++++++||||||||||+|+++|+|+++++|+++|++||++|||||
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VpVyVMLPLd~V~~~~~l~~~~al~a~L~aLK~aGVdGV 285 (681)
T PLN02705 206 PGNGRYTSTSPITSVGCLEADQLIQDVHSGEHENDFTETFYVPVYVMLAVGIINNFCQLVDPEGVRQELSHMKSLNVDGV 285 (681)
T ss_pred cccccccccCccccccccchhhhhhccCCCCCccCcCCCCceeEEEEeecceeccCCcccCHHHHHHHHHHHHHcCCCEE
Confidence 467788888889999999 6999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCccccCChhhhhhhhcCCCeEeeCCCCCc
Q 015723 150 MVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRR 229 (402)
Q Consensus 150 ~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsFHqCGgNVGDt~~IpLP~WV~~~g~~~PDI~~tDr~G~r 229 (402)
|||||||+||+++|++|||++|++||+|||++|||||||||||||||||||+|+||||+||++++++|||||||||+|+|
T Consensus 286 mvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IPLP~WV~e~g~~nPDifftDr~G~r 365 (681)
T PLN02705 286 VVDCWWGIVEGWNPQKYVWSGYRELFNIIREFKLKLQVVMAFHEYGGNASGNVMISLPQWVLEIGKDNQDIFFTDREGRR 365 (681)
T ss_pred EEeeeeeEeecCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEeeccCCCCCCcccccCCHHHHHhcccCCCceeecCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceecccCcccccCCCCchHHHHHHHHHHHHHHhhhhcCceEEEEEeeccCCCccCCCCCCCCCCCccCCCccccccc
Q 015723 230 NSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRYPTYPAKHGWKYPGIGEFQCYD 309 (402)
Q Consensus 230 n~E~LSl~~D~~pvl~GRtp~~~Y~dfm~sF~~~fa~~~~~~vI~eI~VGlGP~GELRYPSyp~~~gW~~pGiGEFQCYD 309 (402)
|+||||||+|++|||+||||+|+|+|||+|||++|++||++++|+||+|||||||||||||||+..||+|||||||||||
T Consensus 366 n~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl~~g~I~eI~VGLGP~GELRYPSYp~~~gW~fPGiGEFQCYD 445 (681)
T PLN02705 366 NTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFDDLFVEGLITAVEIGLGASGELKYPSFPERMGWIYPGIGEFQCYD 445 (681)
T ss_pred ccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHHHhccCCceeEEEeccCCCccccCCCCcccCCCCCCCcceeeecc
Confidence 99999999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCcccCCCCCCCCCCCCCCCCCCccccCCccccccccchHHHhHHHHHhHHHHHHHHHHHhcCCce
Q 015723 310 KYLMKSLSKAAEARGHLFWARGPGNAGSYNSTPHETGFFRDGGEYDSYYGRFFLNWYSQVLIDHGDRVFALANLAFEGTC 389 (402)
Q Consensus 310 k~~~~~fr~~a~~kgn~~WG~gP~nag~yn~~P~~t~FF~~gg~~~S~YG~fFL~WYs~~Li~HgdrvL~~A~~~F~~~~ 389 (402)
|||+++|+++|+++||++||+||+|||+||+.|++|+||+++|+|+|+||||||+|||++||+||||||++|+.+|++++
T Consensus 446 kymla~Lk~aA~a~GhpeWG~gP~dAg~YN~~P~~tgFF~~~G~w~S~YGkFFLsWYS~~Ll~HGDrVLs~A~~vF~~~~ 525 (681)
T PLN02705 446 KYSQQNLRKAAKSRGHSFWARGPDNAGQYNSRPHETGFFCERGDYDSYYGRFFLHWYSQLLIDHADNVLSLANLAFEETK 525 (681)
T ss_pred HHHHHHHHHHHHHhCcHhhccCCCCccccCCCCCCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence 99999999999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred eeEEEeeeeeecC
Q 015723 390 ISAKVSHQNFFFF 402 (402)
Q Consensus 390 l~aKV~GIHWwY~ 402 (402)
|+||||||||||+
T Consensus 526 LsaKVaGIHWWY~ 538 (681)
T PLN02705 526 IIVKIPAVYWWYK 538 (681)
T ss_pred EEEEeccccccCC
Confidence 9999999999996
No 3
>PLN02803 beta-amylase
Probab=100.00 E-value=5e-134 Score=1032.18 Aligned_cols=296 Identities=54% Similarity=1.049 Sum_probs=290.0
Q ss_pred CCCCCccEEEeeccceeeCCCcccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeE
Q 015723 106 AGTPYVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKL 185 (402)
Q Consensus 106 ~~~~~vpvyVMlPLd~V~~~~~~~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv 185 (402)
...++||||||||||+|+++|+++++++|+++|++||++||||||||||||+||+++|++|||++|++|++|||++||||
T Consensus 81 ~~~~~vpvyVMlPLd~V~~~~~~~~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKl 160 (548)
T PLN02803 81 KNDSGVPVFVMLPLDTVTMGGNLNKPRAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEGYAELVQMVQKHGLKL 160 (548)
T ss_pred ccCCceeEEEEeecceeccCCcccCHHHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHHHHHHHHHHHHcCCeE
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeeccCCCCCCCccccCChhhhhhhhcCCCeEeeCCCCCccccceecccCcccccCCCCchHHHHHHHHHHHHHHh
Q 015723 186 QVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFN 265 (402)
Q Consensus 186 ~vvmsFHqCGgNVGDt~~IpLP~WV~~~g~~~PDI~~tDr~G~rn~E~LSl~~D~~pvl~GRtp~~~Y~dfm~sF~~~fa 265 (402)
|+|||||||||||||+|+||||+||++++++||||+||||+|+||+||||||+|++|||+||||+|+|+|||+|||++|+
T Consensus 161 q~vmSFHqCGGNVGD~~~IpLP~WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~ 240 (548)
T PLN02803 161 QVVMSFHQCGGNVGDSCSIPLPPWVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRERFK 240 (548)
T ss_pred EEEEEecccCCCCCCcccccCCHHHHHhhhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCceEEEEEeeccCCCccCCCCCCCCCC-CccCCCcccccccHHHHHHHHHHHHHhCCcccCC-CCCCCCCCCCCCC
Q 015723 266 EFFVDGIIAEIEVGLGPCGELRYPTYPAKHG-WKYPGIGEFQCYDKYLMKSLSKAAEARGHLFWAR-GPGNAGSYNSTPH 343 (402)
Q Consensus 266 ~~~~~~vI~eI~VGlGP~GELRYPSyp~~~g-W~~pGiGEFQCYDk~~~~~fr~~a~~kgn~~WG~-gP~nag~yn~~P~ 343 (402)
+|++ +||+||+|||||||||||||||+..| |+||||||||||||||+++||++|+++||++||+ ||||||+||++|+
T Consensus 241 ~~l~-~~I~eI~VGlGP~GELRYPSYp~~~g~w~fPGiGEFQCYDky~l~~L~~aA~~~G~p~WG~~gP~dAg~Yn~~P~ 319 (548)
T PLN02803 241 DYLG-GVIAEIQVGMGPCGELRYPSYPESNGTWRFPGIGEFQCYDKYMRASLEASAEAIGKKDWGRGGPHDAGEYKQFPE 319 (548)
T ss_pred HHhc-CceEEEEeccccCccccCCCCcCcCCCccCCCccceeeccHHHHHHHHHHHHHhCCHhhccCCCCCcCcCCCCCC
Confidence 9998 79999999999999999999999888 9999999999999999999999999999999996 8999999999999
Q ss_pred CCCccccCCccccccccchHHHhHHHHHhHHHHHHHHHHHhcCC--ceeeEEEeeeeeecC
Q 015723 344 ETGFFRDGGEYDSYYGRFFLNWYSQVLIDHGDRVFALANLAFEG--TCISAKVSHQNFFFF 402 (402)
Q Consensus 344 ~t~FF~~gg~~~S~YG~fFL~WYs~~Li~HgdrvL~~A~~~F~~--~~l~aKV~GIHWwY~ 402 (402)
+|+||+++|+|+|+||||||+|||++||+||||||++|+++|++ ++|++|||||||||+
T Consensus 320 ~t~FF~~~G~~~S~YG~FFL~WYs~~Ll~HgdrvL~~A~~~F~g~~v~l~aKv~GIHWwY~ 380 (548)
T PLN02803 320 ETGFFRRDGTWNTEYGQFFLEWYSGKLLEHGDRILAAAEGIFQGTGAKLSGKVAGIHWHYR 380 (548)
T ss_pred CCCCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCceEEEEeceeeeecC
Confidence 99999998999999999999999999999999999999999986 489999999999996
No 4
>PLN02801 beta-amylase
Probab=100.00 E-value=3.2e-134 Score=1029.57 Aligned_cols=295 Identities=54% Similarity=1.053 Sum_probs=290.1
Q ss_pred CCCCccEEEeeccceeeCCCcccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEE
Q 015723 107 GTPYVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQ 186 (402)
Q Consensus 107 ~~~~vpvyVMlPLd~V~~~~~~~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~ 186 (402)
..++||||||||||+|+++|+++++++++++|++||++||||||||||||+||+++|++|||++|++|++|||++|||||
T Consensus 12 ~~~~vpvyVMlPLd~V~~~~~l~~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlq 91 (517)
T PLN02801 12 LANYVPVYVMLPLGVVTADNVLEDEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSAYRSLFELVQSFGLKIQ 91 (517)
T ss_pred cCCceeEEEeeecceecCCCccCCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHHHHHHHHHHHHcCCeEE
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeeccCCCCCCCccccCChhhhhhhhcCCCeEeeCCCCCccccceecccCcccccCCCCchHHHHHHHHHHHHHHhh
Q 015723 187 VVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNE 266 (402)
Q Consensus 187 vvmsFHqCGgNVGDt~~IpLP~WV~~~g~~~PDI~~tDr~G~rn~E~LSl~~D~~pvl~GRtp~~~Y~dfm~sF~~~fa~ 266 (402)
||||||||||||||+|+||||+||++++++||||+||||+|+||+||||||+|++|||+||||+|+|+|||+|||++|++
T Consensus 92 ~vmSFHqCGGNVGD~~~IpLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~ 171 (517)
T PLN02801 92 AIMSFHQCGGNVGDAVNIPIPQWVRDVGDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFRENMAD 171 (517)
T ss_pred EEEEecccCCCCCCcccccCCHHHHHhhccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCceEEEEEeeccCCCccCCCCCCCCCCCccCCCcccccccHHHHHHHHHHHHHhCCcccCCCCCCCCCCCCCCCCCC
Q 015723 267 FFVDGIIAEIEVGLGPCGELRYPTYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFWARGPGNAGSYNSTPHETG 346 (402)
Q Consensus 267 ~~~~~vI~eI~VGlGP~GELRYPSyp~~~gW~~pGiGEFQCYDk~~~~~fr~~a~~kgn~~WG~gP~nag~yn~~P~~t~ 346 (402)
|+++++|+||+|||||||||||||||+..||+||||||||||||||+++||++|+++||++||+ |+|||+||++|++|+
T Consensus 172 ~l~~~~I~eI~VGlGP~GELRYPSYp~~~gW~fpGiGEFQCYDky~~~~l~~aA~~~G~p~Wg~-P~dag~Yn~~P~~t~ 250 (517)
T PLN02801 172 FLEAGVIIDIEVGLGPAGELRYPSYPETQGWVFPGIGEFQCYDKYLKADFKEAATEAGHPEWEL-PDDAGEYNDTPEDTG 250 (517)
T ss_pred hccCCeeEEEEEcccccccccCCCCcCCCCCCCCCcceeeeccHHHHHHHHHHHHhcCCcccCC-CCCCCcccCCCCCCC
Confidence 9988899999999999999999999999999999999999999999999999999999999996 999999999999999
Q ss_pred ccccCCccccccccchHHHhHHHHHhHHHHHHHHHHHhcCCc--eeeEEEeeeeeecC
Q 015723 347 FFRDGGEYDSYYGRFFLNWYSQVLIDHGDRVFALANLAFEGT--CISAKVSHQNFFFF 402 (402)
Q Consensus 347 FF~~gg~~~S~YG~fFL~WYs~~Li~HgdrvL~~A~~~F~~~--~l~aKV~GIHWwY~ 402 (402)
||+++|+|+|+||||||+|||++|++||||||++|+++|+++ +|+||||||||||+
T Consensus 251 FF~~~G~~~s~YG~FFL~WYs~~Ll~HgdrvL~~A~~~F~g~~v~l~aKvaGIHWwY~ 308 (517)
T PLN02801 251 FFKSNGTYLTEEGKFFLTWYSNKLLLHGDQILDEANKAFLGCKVKLAAKVSGIHWWYK 308 (517)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeceeeeecC
Confidence 999999999999999999999999999999999999999875 89999999999996
No 5
>PLN00197 beta-amylase; Provisional
Probab=100.00 E-value=7.9e-134 Score=1033.37 Aligned_cols=296 Identities=49% Similarity=0.982 Sum_probs=289.2
Q ss_pred CCCCCccEEEeeccceeeCCCcccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeE
Q 015723 106 AGTPYVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKL 185 (402)
Q Consensus 106 ~~~~~vpvyVMlPLd~V~~~~~~~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv 185 (402)
...++||||||||||+|+++|+|+++++|+++|++||++||||||||||||+||+++|++|||++|++|++|||++||||
T Consensus 101 ~~~~~vpvyVMLPLd~V~~~~~l~~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsgY~~L~~mvr~~GLKl 180 (573)
T PLN00197 101 EKGKGVPVYVMMPLDSVTMGNTVNRRKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGGYNELLEMAKRHGLKV 180 (573)
T ss_pred ccCCCeeEEEEeecceeccCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHHHHHHHHHHHHcCCeE
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeeccCCCCCCCccccCChhhhhhhhcCCCeEeeCCCCCccccceecccCcccccCCCCchHHHHHHHHHHHHHHh
Q 015723 186 QVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFN 265 (402)
Q Consensus 186 ~vvmsFHqCGgNVGDt~~IpLP~WV~~~g~~~PDI~~tDr~G~rn~E~LSl~~D~~pvl~GRtp~~~Y~dfm~sF~~~fa 265 (402)
|||||||||||||||+|+||||+||++++++||||+||||+|+||+||||||+|++|||+||||+|+|+|||+|||++|+
T Consensus 181 q~VmSFHqCGGNVGD~~~IpLP~WV~~~g~~dpDifftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~ 260 (573)
T PLN00197 181 QAVMSFHQCGGNVGDSCTIPLPKWVVEEVDKDPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRAFRDNFK 260 (573)
T ss_pred EEEEEecccCCCCCCcccccCCHHHHHhhccCCCceeecCCCCcccceeccccccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCceEEEEEeeccCCCccCCCCCCCCCC-CccCCCcccccccHHHHHHHHHHHHHhCCcccCC-CCCCCCCCCCCCC
Q 015723 266 EFFVDGIIAEIEVGLGPCGELRYPTYPAKHG-WKYPGIGEFQCYDKYLMKSLSKAAEARGHLFWAR-GPGNAGSYNSTPH 343 (402)
Q Consensus 266 ~~~~~~vI~eI~VGlGP~GELRYPSyp~~~g-W~~pGiGEFQCYDk~~~~~fr~~a~~kgn~~WG~-gP~nag~yn~~P~ 343 (402)
+|++ ++|+||+|||||||||||||||+..| |+||||||||||||||+++||++|++.||++||+ ||+|||+||+.|+
T Consensus 261 ~~l~-~~I~eI~VGlGP~GELRYPSYp~~~g~w~fPGiGEFQCYDkyml~~L~~aA~~~G~p~WG~~gP~dAg~Yn~~P~ 339 (573)
T PLN00197 261 HLLG-DTIVEIQVGMGPAGELRYPSYPEQNGTWKFPGIGAFQCYDKYMLSSLKAAAEAAGKPEWGSTGPTDAGHYNNWPE 339 (573)
T ss_pred HHhc-CceeEEEeccCcCccccCCCCcCcCCCcCCCCccceeechHHHHHHHHHHHHHhCCHhhcCCCCCCccccCCCCC
Confidence 9998 69999999999999999999999888 9999999999999999999999999999999995 8999999999999
Q ss_pred CCCccc-cCCccccccccchHHHhHHHHHhHHHHHHHHHHHhcCC--ceeeEEEeeeeeecC
Q 015723 344 ETGFFR-DGGEYDSYYGRFFLNWYSQVLIDHGDRVFALANLAFEG--TCISAKVSHQNFFFF 402 (402)
Q Consensus 344 ~t~FF~-~gg~~~S~YG~fFL~WYs~~Li~HgdrvL~~A~~~F~~--~~l~aKV~GIHWwY~ 402 (402)
+|+||+ ++|+|+|+||||||+|||++||+||||||++|+.+|++ ++|++|||||||||+
T Consensus 340 ~t~FF~~~gG~w~S~YG~FFL~WYS~~Ll~HGDrVL~~A~~~F~g~~v~l~aKVaGIHWwY~ 401 (573)
T PLN00197 340 DTRFFKKEGGGWNSPYGEFFLSWYSQMLLDHGERILSSAKSIFENTGVKISVKIAGIHWHYG 401 (573)
T ss_pred CCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccceeecC
Confidence 999999 47899999999999999999999999999999999985 789999999999996
No 6
>PLN02161 beta-amylase
Probab=100.00 E-value=1.1e-131 Score=1011.09 Aligned_cols=297 Identities=41% Similarity=0.796 Sum_probs=287.4
Q ss_pred CCCCCCccEEEeeccceeeCCC----cccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHH
Q 015723 105 FAGTPYVPVYVMLPLGIIDMNC----ELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRE 180 (402)
Q Consensus 105 ~~~~~~vpvyVMlPLd~V~~~~----~~~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~ 180 (402)
....++||||||||||+|+.++ +++++++|+++|++||++||||||||||||+||+++|++|||++|++|++|||+
T Consensus 86 ~~~~~~vpvyVMlPLD~V~~~~~~~~~v~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsgY~~l~~mvr~ 165 (531)
T PLN02161 86 SSRHKRVPVFVMMPVDTFGIDASGCPKIKRLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSLYEELFRLISE 165 (531)
T ss_pred cccCCCeeEEEEeecceeccCcccccccCCHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHHHHHHHHHHHH
Confidence 3446799999999999999764 799999999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEEEeeeccCCCCCCCccccCChhhhhhhhcCCCeEeeCCCCCccccceecccCcccccCCCCchHHHHHHHHHH
Q 015723 181 LELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSF 260 (402)
Q Consensus 181 ~GLKv~vvmsFHqCGgNVGDt~~IpLP~WV~~~g~~~PDI~~tDr~G~rn~E~LSl~~D~~pvl~GRtp~~~Y~dfm~sF 260 (402)
+|||||||||||||||||||+|+||||+||++++++||||+||||+|+||+||||||+|++|||+||||+|+|+|||+||
T Consensus 166 ~GLKlq~vmSFHqCGGNvGd~~~IpLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SF 245 (531)
T PLN02161 166 AGLKLHVALCFHSNMHLFGGKGGISLPLWIREIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFMLSF 245 (531)
T ss_pred cCCeEEEEEEecccCCCCCCccCccCCHHHHhhhccCCCceEEcCCCCcccceeeeecccchhcCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcCceEEEEEeeccCCCccCCCCCCCCCC-CccCCCcccccccHHHHHHHHHHHHHhCCcccCC-CCCCCCCC
Q 015723 261 RVEFNEFFVDGIIAEIEVGLGPCGELRYPTYPAKHG-WKYPGIGEFQCYDKYLMKSLSKAAEARGHLFWAR-GPGNAGSY 338 (402)
Q Consensus 261 ~~~fa~~~~~~vI~eI~VGlGP~GELRYPSyp~~~g-W~~pGiGEFQCYDk~~~~~fr~~a~~kgn~~WG~-gP~nag~y 338 (402)
|++|++|++ ++|+||+|||||||||||||||+..| |+||||||||||||||+++||++|+++||++||+ +|+|||.|
T Consensus 246 r~~F~~~~~-~~I~eI~VGlGP~GELRYPSYp~~~g~w~fPGiGEFQCYDky~l~~L~~~A~~~G~p~WG~~gP~dAg~Y 324 (531)
T PLN02161 246 STKFEPYIG-NVIEEISIGLGPSGELRYPAHPSGDGRWKFPGIGEFQCHDKYMMEDLMAVASQEGKPQWGSRDPPNTGCY 324 (531)
T ss_pred HHHHHHHhc-CceEEEEeccccCccccCCCCcCcCCCccCCCcceeeeccHHHHHHHHHHHHHhCCHhhccCCCCCCccc
Confidence 999999997 79999999999999999999999876 9999999999999999999999999999999995 89999999
Q ss_pred CCCCCCCCcccc-CCccccccccchHHHhHHHHHhHHHHHHHHHHHhcCC--------ceeeEEEeeeeeecC
Q 015723 339 NSTPHETGFFRD-GGEYDSYYGRFFLNWYSQVLIDHGDRVFALANLAFEG--------TCISAKVSHQNFFFF 402 (402)
Q Consensus 339 n~~P~~t~FF~~-gg~~~S~YG~fFL~WYs~~Li~HgdrvL~~A~~~F~~--------~~l~aKV~GIHWwY~ 402 (402)
|+.|++|+||++ +|+|+|+||||||+|||++||+||||||++|+++|++ ++|+||||||||||+
T Consensus 325 n~~P~~t~FF~~~~gs~~S~YG~FFL~WYs~~Ll~HgdrvL~~A~~~F~~~~~~~~~~v~l~aKv~GIHWwY~ 397 (531)
T PLN02161 325 NSFPSGVPFFEEGNDSFLSDYGRFFLEWYSGKLICHADAILAKAADVLRRRQESEKSSVMLVAKIGGIYWWYK 397 (531)
T ss_pred CCCCCCCCCCcCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcceEEEEeccccccCC
Confidence 999999999997 5789999999999999999999999999999999963 789999999999996
No 7
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=100.00 E-value=5.6e-120 Score=908.38 Aligned_cols=274 Identities=60% Similarity=1.146 Sum_probs=237.2
Q ss_pred EEeeccceeeCCCcccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEEEEeeec
Q 015723 114 YVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHE 193 (402)
Q Consensus 114 yVMlPLd~V~~~~~~~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsFHq 193 (402)
|||||||+|+++++++ +++++|++||++||+|||||||||+||+++|++|||++|++|++|||++||||||||||||
T Consensus 1 yVmlPLd~v~~~~~~~---~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydWs~Y~~l~~~vr~~GLk~~~vmsfH~ 77 (402)
T PF01373_consen 1 YVMLPLDTVTDDNDWN---ALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDWSGYRELFEMVRDAGLKLQVVMSFHQ 77 (402)
T ss_dssp EEE--TTSSCTTSECH---HHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB---HHHHHHHHHHHHTT-EEEEEEE-S-
T ss_pred CceeeeeeecCCCcHH---HHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCcHHHHHHHHHHHHcCCeEEEEEeeec
Confidence 8999999999887764 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCccccCChhhhhhhhcCCCeEeeCCCCCccccceecccCcccccCCCCchHHHHHHHHHHHHHHhhhhcCceE
Q 015723 194 CGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGII 273 (402)
Q Consensus 194 CGgNVGDt~~IpLP~WV~~~g~~~PDI~~tDr~G~rn~E~LSl~~D~~pvl~GRtp~~~Y~dfm~sF~~~fa~~~~~~vI 273 (402)
|||||||+|+||||.||++++++| ||+||||+|+||+|||| ||++||| +|+|+|||+||+++|++|+ ++|
T Consensus 78 cGgNvgD~~~IpLP~Wv~~~~~~~-di~ytd~~G~rn~E~lS------p~~~grt-~~~Y~dfm~sF~~~f~~~~--~~I 147 (402)
T PF01373_consen 78 CGGNVGDDCNIPLPSWVWEIGKKD-DIFYTDRSGNRNKEYLS------PVLDGRT-LQCYSDFMRSFRDNFSDYL--STI 147 (402)
T ss_dssp BSSSTTSSSEB-S-HHHHHHHHHS-GGEEE-TTS-EEEEEE-------CTBTTBC-HHHHHHHHHHHHHHCHHHH--TGE
T ss_pred CCCCCCCccCCcCCHHHHhccccC-CcEEECCCCCcCcceee------cccCCch-HHHHHHHHHHHHHHHHHHH--hhh
Confidence 999999999999999999999999 99999999999999999 8999999 9999999999999999999 699
Q ss_pred EEEEeeccCCCccCCCCCCCCCCCccCCCcccccccHHHHHHHHHHHHHhC------CcccCC-CCCCCCCCCCCCCCCC
Q 015723 274 AEIEVGLGPCGELRYPTYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARG------HLFWAR-GPGNAGSYNSTPHETG 346 (402)
Q Consensus 274 ~eI~VGlGP~GELRYPSyp~~~gW~~pGiGEFQCYDk~~~~~fr~~a~~kg------n~~WG~-gP~nag~yn~~P~~t~ 346 (402)
+||+|||||||||||||||+.+||+||||||||||||||+++||++|+.|| |++||+ +|+++ ||++|++|+
T Consensus 148 ~~I~vglGP~GELRYPSy~~~~gw~~pgiGeFQcYDk~~~~~l~~~a~~kyg~~~~~~~~Wg~~gp~~~--y~~~P~~t~ 225 (402)
T PF01373_consen 148 TEIQVGLGPAGELRYPSYPESDGWRFPGIGEFQCYDKYMLASLRAAAEAKYGSLGAGNPAWGLSGPHDA--YNSPPEDTG 225 (402)
T ss_dssp EEEEE--SGGGBSS-S-S-GGGTB-TTS-----B-SHHHHHHHHHHHHHHTTCCTCTCTTHTS-SSSGG--TT-SGGGST
T ss_pred eEEEeccCCcceeccCCCCCCCCCcCCCcceeeeccHHHHHHHHHHHHHhhhhhccccccCCCCCCChh--hcCCCCCCC
Confidence 999999999999999999999999999999999999999999999999554 899995 79888 999999999
Q ss_pred ccccCCccccccccchHHHhHHHHHhHHHHHHHHHHHhcCCc---eeeEEEeeeeeecC
Q 015723 347 FFRDGGEYDSYYGRFFLNWYSQVLIDHGDRVFALANLAFEGT---CISAKVSHQNFFFF 402 (402)
Q Consensus 347 FF~~gg~~~S~YG~fFL~WYs~~Li~HgdrvL~~A~~~F~~~---~l~aKV~GIHWwY~ 402 (402)
||+++|+|+|+||||||+|||++|++||||||++|+++|+++ +|++|||||||||+
T Consensus 226 fF~~~G~~~s~YG~fFL~WYs~~L~~HgdrvL~~A~~~F~~~~~v~l~aKv~GIHWwy~ 284 (402)
T PF01373_consen 226 FFRDNGSWDSPYGKFFLSWYSGMLIDHGDRVLSLARSVFDGTFGVKLSAKVPGIHWWYN 284 (402)
T ss_dssp TTSTTCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHS-EEEEEEE---TTTT
T ss_pred CcccCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecceeeccC
Confidence 999999999999999999999999999999999999999987 89999999999995
No 8
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.93 E-value=7.2e-26 Score=223.06 Aligned_cols=213 Identities=19% Similarity=0.342 Sum_probs=154.1
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeee-eeeeecCCCceecchHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCccccCCh
Q 015723 130 DPEILVNQLKILKSINVDGVMVDCW-WGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQ 208 (402)
Q Consensus 130 ~~~~l~~dL~~LK~aGVdgV~vdVW-WGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsFHqCGgNVGDt~~IpLP~ 208 (402)
+++.|++||++||++|+|.|+|.++ |..+|| .||+|||+++|+++++++++|||| ||++ ++.+.|.
T Consensus 8 ~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP-~eG~ydF~~lD~~l~~a~~~Gi~v--iL~~----------~~~~~P~ 74 (374)
T PF02449_consen 8 PEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEP-EEGQYDFSWLDRVLDLAAKHGIKV--ILGT----------PTAAPPA 74 (374)
T ss_dssp -CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-S-BTTB---HHHHHHHHHHHCTT-EE--EEEE----------CTTTS-H
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEechhhccC-CCCeeecHHHHHHHHHHHhccCeE--EEEe----------ccccccc
Confidence 5689999999999999999999877 999999 899999999999999999999999 5574 6788999
Q ss_pred hhhhhhhcCCCeEeeCCCCCccccceecccCcccccCCCCc----hHHHHHHHHHHHHHHhhhhcCceEEEEEeeccCCC
Q 015723 209 WVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTA----VEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCG 284 (402)
Q Consensus 209 WV~~~g~~~PDI~~tDr~G~rn~E~LSl~~D~~pvl~GRtp----~~~Y~dfm~sF~~~fa~~~~~~vI~eI~VGlGP~G 284 (402)
|+. +++||++.+|++|++.. .++|.. .+.|+++++.|.+++++
T Consensus 75 Wl~---~~~Pe~~~~~~~g~~~~------------~g~~~~~~~~~p~yr~~~~~~~~~l~~------------------ 121 (374)
T PF02449_consen 75 WLY---DKYPEILPVDADGRRRG------------FGSRQHYCPNSPAYREYARRFIRALAE------------------ 121 (374)
T ss_dssp HHH---CCSGCCC-B-TTTSBEE------------CCCSTT-HCCHHHHHHHHHHHHHHHHH------------------
T ss_pred chh---hhcccccccCCCCCcCc------------cCCccccchhHHHHHHHHHHHHHHHHh------------------
Confidence 999 88999999999998755 444433 89999999999999999
Q ss_pred ccCCCCCCCCCCCcc---CCCcccccccHHHHHHHHHHHHHhC------CcccCCCC--CCCCCCCC--CCCCCCccccC
Q 015723 285 ELRYPTYPAKHGWKY---PGIGEFQCYDKYLMKSLSKAAEARG------HLFWARGP--GNAGSYNS--TPHETGFFRDG 351 (402)
Q Consensus 285 ELRYPSyp~~~gW~~---pGiGEFQCYDk~~~~~fr~~a~~kg------n~~WG~gP--~nag~yn~--~P~~t~FF~~g 351 (402)
||..+|...||++ ||.+ .|||+.|++.|++|+++|| |.+||+.- +....+.. +|..+....+.
T Consensus 122 --~y~~~p~vi~~~i~NE~~~~--~~~~~~~~~~f~~wLk~kY~ti~~LN~aWgt~~ws~~~~~f~~v~~P~~~~~~~~~ 197 (374)
T PF02449_consen 122 --RYGDHPAVIGWQIDNEPGYH--RCYSPACQAAFRQWLKEKYGTIEALNRAWGTAFWSQRYSSFDEVPPPRPTSSPENP 197 (374)
T ss_dssp --HHTTTTTEEEEEECCSTTCT--S--SHHHHHHHHHHHHHHHSSHHHHHHHHTTTGGG---SSGGG---S-S-SS---H
T ss_pred --hccccceEEEEEeccccCcC--cCCChHHHHHHHHHHHHHhCCHHHHHHHHcCCcccCccCcHHhcCCCCCCCCCCCh
Confidence 6678999999998 5644 7999999999999999999 89999843 22233333 34444422221
Q ss_pred CccccccccchHHHhHHHHHhHHHHHHHHHHHhcCCceeeEEEeee
Q 015723 352 GEYDSYYGRFFLNWYSQVLIDHGDRVFALANLAFEGTCISAKVSHQ 397 (402)
Q Consensus 352 g~~~S~YG~fFL~WYs~~Li~HgdrvL~~A~~~F~~~~l~aKV~GI 397 (402)
+ .-.+|...-+..+.+.-..+.+..+++-++.+|..+.-+.
T Consensus 198 ~-----~~~D~~rF~~~~~~~~~~~~~~~ir~~~p~~~vt~n~~~~ 238 (374)
T PF02449_consen 198 A-----QWLDWYRFQSDRVAEFFRWQADIIREYDPDHPVTTNFMGS 238 (374)
T ss_dssp H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHSTT-EEE-EE-TT
T ss_pred H-----HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCcccc
Confidence 1 1224555567788888888888888887788888776554
No 9
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=99.81 E-value=1.1e-19 Score=193.92 Aligned_cols=208 Identities=18% Similarity=0.306 Sum_probs=161.2
Q ss_pred cChHHHHHHHHHHHHcCcceEEEeee-eeeeecCCCceecchHHHHH-HHHHHHcCCeEEEEEeeeccCCCCCCCccccC
Q 015723 129 VDPEILVNQLKILKSINVDGVMVDCW-WGIVEAHTPQVYNWSGYRRL-FQIVRELELKLQVVMSFHECGGNVGDDVHIPL 206 (402)
Q Consensus 129 ~~~~~l~~dL~~LK~aGVdgV~vdVW-WGiVE~~~p~~Ydws~Y~~l-~~mvr~~GLKv~vvmsFHqCGgNVGDt~~IpL 206 (402)
.+++.|+++|++||++|++.|+++.+ |+.+|| .+|+|||++.|+. ++++++.||++ ||++ .|+...
T Consensus 27 ~p~~~w~ddl~~mk~~G~N~V~ig~faW~~~eP-~eG~fdf~~~D~~~l~~a~~~Gl~v--il~t---------~P~g~~ 94 (673)
T COG1874 27 WPRETWMDDLRKMKALGLNTVRIGYFAWNLHEP-EEGKFDFTWLDEIFLERAYKAGLYV--ILRT---------GPTGAP 94 (673)
T ss_pred CCHHHHHHHHHHHHHhCCCeeEeeeEEeeccCc-cccccCcccchHHHHHHHHhcCceE--EEec---------CCCCCC
Confidence 46799999999999999999999777 999999 8999999999999 99999999999 5574 278899
Q ss_pred ChhhhhhhhcCCCeEeeCCCCCccccceecccCcccccCCCCc----hHHHHHHHHHHHHHHhhhhcCceEEEEEeeccC
Q 015723 207 PQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTA----VEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGP 282 (402)
Q Consensus 207 P~WV~~~g~~~PDI~~tDr~G~rn~E~LSl~~D~~pvl~GRtp----~~~Y~dfm~sF~~~fa~~~~~~vI~eI~VGlGP 282 (402)
|+|+. +++|+|+.+|++|.+.. +++|.+ .+.|+++.+.+.+++++++
T Consensus 95 P~Wl~---~~~PeiL~~~~~~~~~~------------~g~r~~~~~~~~~Yr~~~~~i~~~irer~-------------- 145 (673)
T COG1874 95 PAWLA---KKYPEILAVDENGRVRS------------DGARENICPVSPVYREYLDRILQQIRERL-------------- 145 (673)
T ss_pred chHHh---cCChhheEecCCCcccC------------CCcccccccccHHHHHHHHHHHHHHHHHH--------------
Confidence 99999 89999999999999876 788866 5789999999999999931
Q ss_pred CCccCCCCCCCCCCCcc---CCCcccccccHHHHHHHHHHHHHhC------CcccCCC--CCCCCCCCCCCCCCCccccC
Q 015723 283 CGELRYPTYPAKHGWKY---PGIGEFQCYDKYLMKSLSKAAEARG------HLFWARG--PGNAGSYNSTPHETGFFRDG 351 (402)
Q Consensus 283 ~GELRYPSyp~~~gW~~---pGiGEFQCYDk~~~~~fr~~a~~kg------n~~WG~g--P~nag~yn~~P~~t~FF~~g 351 (402)
|..+|...+||+ +|-= -|||++|++.|+.|++++| |.+|++- -+....+..-+....|=.+.
T Consensus 146 -----~~~~~~v~~w~~dneY~~~--~~~~~~~~~~f~~wLk~~yg~l~~ln~~w~t~~ws~t~~~~~~i~~p~~~~e~~ 218 (673)
T COG1874 146 -----YGNGPAVITWQNDNEYGGH--PCYCDYCQAAFRLWLKKGYGSLDNLNEAWGTSFWSHTYKDFDEIMSPNPFGELP 218 (673)
T ss_pred -----hccCCceeEEEccCccCCc--cccccccHHHHHHHHHhCcchHHhhhhhhhhhhcccccccHHhhcCCCCccccC
Confidence 668999999998 5521 3999999999999999998 8899863 33444443322211111111
Q ss_pred --CccccccccchHHHhHHHHHhHHHHHHHHHHHhcCCce
Q 015723 352 --GEYDSYYGRFFLNWYSQVLIDHGDRVFALANLAFEGTC 389 (402)
Q Consensus 352 --g~~~S~YG~fFL~WYs~~Li~HgdrvL~~A~~~F~~~~ 389 (402)
+.+ ..|=+|. +.+.++--++....++..|++.+
T Consensus 219 ~~~~~-ld~~~f~----~e~~~~~~~~~~~~~~~~~P~~p 253 (673)
T COG1874 219 LPGLY-LDYRRFE----SEQILEFVREEGEAIKAYFPNRP 253 (673)
T ss_pred Cccch-hhHhhhh----hhhhHHHHHHHHHHHHHhCCCCC
Confidence 111 2222222 34577777888888888886543
No 10
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=98.99 E-value=2.8e-09 Score=105.36 Aligned_cols=78 Identities=19% Similarity=0.382 Sum_probs=54.8
Q ss_pred cChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchH---HHHHHHHHHHcCCeEEEEEeeeccCCCCCCCcccc
Q 015723 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSG---YRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIP 205 (402)
Q Consensus 129 ~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~---Y~~l~~mvr~~GLKv~vvmsFHqCGgNVGDt~~Ip 205 (402)
.+++.|+.-|++||++|+|.|.+.|+|...|+ .||+|||++ .++++++|+++||+|++=..==.|+- ...--
T Consensus 21 ~p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~-~~g~~df~g~~dl~~f~~~a~~~gl~vilrpGpyi~aE----~~~gG 95 (319)
T PF01301_consen 21 IPPEYWRDRLQKMKAAGLNTVSTYVPWNLHEP-EEGQFDFTGNRDLDRFLDLAQENGLYVILRPGPYICAE----WDNGG 95 (319)
T ss_dssp S-GGGHHHHHHHHHHTT-SEEEEE--HHHHSS-BTTB---SGGG-HHHHHHHHHHTT-EEEEEEES---TT----BGGGG
T ss_pred CChhHHHHHHHHHHhCCcceEEEeccccccCC-CCCcccccchhhHHHHHHHHHHcCcEEEecccceeccc----ccchh
Confidence 46899999999999999999999999999999 799999997 78999999999999866444333432 23345
Q ss_pred CChhhh
Q 015723 206 LPQWVM 211 (402)
Q Consensus 206 LP~WV~ 211 (402)
+|.||.
T Consensus 96 ~P~Wl~ 101 (319)
T PF01301_consen 96 LPAWLL 101 (319)
T ss_dssp --GGGG
T ss_pred hhhhhh
Confidence 999998
No 11
>PLN03059 beta-galactosidase; Provisional
Probab=98.58 E-value=3.3e-07 Score=101.07 Aligned_cols=147 Identities=20% Similarity=0.271 Sum_probs=106.0
Q ss_pred cChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHH---HHHHHHHHHcCCeEEEEEeeeccCCCCCCCcccc
Q 015723 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGY---RRLFQIVRELELKLQVVMSFHECGGNVGDDVHIP 205 (402)
Q Consensus 129 ~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y---~~l~~mvr~~GLKv~vvmsFHqCGgNVGDt~~Ip 205 (402)
.+++.|+.-|++||++|+|.|.+-|+|..-|| .||+|||++- .+.++++++.||.|++=.+=.-|+- --.--
T Consensus 56 ~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp-~~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAE----w~~GG 130 (840)
T PLN03059 56 STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-SPGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAE----WNFGG 130 (840)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEEecccccCC-CCCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeee----ecCCC
Confidence 47899999999999999999999999999999 7999999985 4567899999999977444444421 11234
Q ss_pred CChhhhhhhhcCCCeEeeCCCCCccccceecccCcccccCCCCchHHHHHHHHHHHHHHhhhhc--------CceEEEEE
Q 015723 206 LPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFV--------DGIIAEIE 277 (402)
Q Consensus 206 LP~WV~~~g~~~PDI~~tDr~G~rn~E~LSl~~D~~pvl~GRtp~~~Y~dfm~sF~~~fa~~~~--------~~vI~eI~ 277 (402)
||.||. +.|+|-+ ||.-+.|.+.|++|-+++.+.+. .|-|.-+|
T Consensus 131 lP~WL~----~~~~i~~------------------------Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQ 182 (840)
T PLN03059 131 FPVWLK----YVPGIEF------------------------RTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQ 182 (840)
T ss_pred Cchhhh----cCCCccc------------------------ccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEE
Confidence 999997 3555432 45567888888888888777662 24566666
Q ss_pred eeccCCCccCCCCCCCCCCCccCCCcccccccHHHHHHHHHHHHHhC
Q 015723 278 VGLGPCGELRYPTYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARG 324 (402)
Q Consensus 278 VGlGP~GELRYPSyp~~~gW~~pGiGEFQCYDk~~~~~fr~~a~~kg 324 (402)
| |=-|.+|... +| --|+.-++.+++.|++.|
T Consensus 183 I------ENEYGs~~~~-----~~-----~~d~~Yl~~l~~~~~~~G 213 (840)
T PLN03059 183 I------ENEYGPVEWE-----IG-----APGKAYTKWAADMAVKLG 213 (840)
T ss_pred e------cccccceecc-----cC-----cchHHHHHHHHHHHHHcC
Confidence 5 4446665322 12 124555677888888887
No 12
>TIGR03356 BGL beta-galactosidase.
Probab=98.34 E-value=1.6e-06 Score=88.87 Aligned_cols=110 Identities=18% Similarity=0.175 Sum_probs=87.2
Q ss_pred cChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceec---chHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCcccc
Q 015723 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYN---WSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIP 205 (402)
Q Consensus 129 ~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Yd---ws~Y~~l~~mvr~~GLKv~vvmsFHqCGgNVGDt~~Ip 205 (402)
.....+++||+.||++|++.+++++=|..+||++++++| +..|+++++.++++||++++.|. | ..
T Consensus 51 d~y~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~-H-----------fd 118 (427)
T TIGR03356 51 DHYHRYEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLY-H-----------WD 118 (427)
T ss_pred cHHHhHHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeec-c-----------CC
Confidence 467899999999999999999999999999997788888 79999999999999999988665 3 46
Q ss_pred CChhhhhhhhcCCCeEeeCCCCCccccceecccCcccccCCCCchHHHHHHHHHHHHHHhhhhc-CceEEEEEe
Q 015723 206 LPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFV-DGIIAEIEV 278 (402)
Q Consensus 206 LP~WV~~~g~~~PDI~~tDr~G~rn~E~LSl~~D~~pvl~GRtp~~~Y~dfm~sF~~~fa~~~~-~~vI~eI~V 278 (402)
+|.|+.+ +.|-.+. ..++.|.+|.+...++|.+... =.||.|..+
T Consensus 119 ~P~~l~~------------~gGw~~~----------------~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~ 164 (427)
T TIGR03356 119 LPQALED------------RGGWLNR----------------DTAEWFAEYAAVVAERLGDRVKHWITLNEPWC 164 (427)
T ss_pred ccHHHHh------------cCCCCCh----------------HHHHHHHHHHHHHHHHhCCcCCEEEEecCcce
Confidence 8999862 2333332 3378888888888888886422 025556654
No 13
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=98.12 E-value=8.4e-06 Score=83.87 Aligned_cols=100 Identities=19% Similarity=0.305 Sum_probs=77.8
Q ss_pred cChHHHHHHHHHHHHcCcceEEEeeeeeeeecCC-Cceec---chHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCccc
Q 015723 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEAHT-PQVYN---WSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHI 204 (402)
Q Consensus 129 ~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~-p~~Yd---ws~Y~~l~~mvr~~GLKv~vvmsFHqCGgNVGDt~~I 204 (402)
.....+++||+.||++|++..++.+=|..++|.+ +|+.| +..|+++++.++++||+.+|.|- | .
T Consensus 55 d~y~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~-H-----------~ 122 (455)
T PF00232_consen 55 DHYHRYKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLY-H-----------F 122 (455)
T ss_dssp GHHHHHHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEE-S-----------S
T ss_pred cchhhhhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeeee-e-----------c
Confidence 4678999999999999999999999999999976 78888 99999999999999999988665 3 5
Q ss_pred cCChhhhhhhhcCCCeEeeCCCCCccccceecccCcccccCCCCchHHHHHHHHHHHHHHhhhh
Q 015723 205 PLPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFF 268 (402)
Q Consensus 205 pLP~WV~~~g~~~PDI~~tDr~G~rn~E~LSl~~D~~pvl~GRtp~~~Y~dfm~sF~~~fa~~~ 268 (402)
.+|.|+.+.| |-. .|.-++.|.+|.+-..++|.++.
T Consensus 123 ~~P~~l~~~g------------gw~----------------~~~~~~~F~~Ya~~~~~~~gd~V 158 (455)
T PF00232_consen 123 DLPLWLEDYG------------GWL----------------NRETVDWFARYAEFVFERFGDRV 158 (455)
T ss_dssp --BHHHHHHT------------GGG----------------STHHHHHHHHHHHHHHHHHTTTB
T ss_pred ccccceeecc------------ccc----------------CHHHHHHHHHHHHHHHHHhCCCc
Confidence 7999998422 222 23448888999999999988844
No 14
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=97.81 E-value=8.5e-05 Score=77.76 Aligned_cols=111 Identities=14% Similarity=0.233 Sum_probs=87.3
Q ss_pred cChHHHHHHHHHHHHcCcceEEEeeeeeeeecCC----CceecchHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCccc
Q 015723 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEAHT----PQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHI 204 (402)
Q Consensus 129 ~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~----p~~Ydws~Y~~l~~mvr~~GLKv~vvmsFHqCGgNVGDt~~I 204 (402)
.....+++|++.||++|++..++.+=|..++|.+ +++-.++.|+++++.++++||+.+|.|.- -
T Consensus 68 D~Yhry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H------------~ 135 (474)
T PRK09852 68 DFYHRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCH------------F 135 (474)
T ss_pred chhhhhHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeC------------C
Confidence 4678999999999999999999999999999964 47788999999999999999999887763 4
Q ss_pred cCChhhhhhhhcCCCeEeeCCCCCccccceecccCcccccCCCCchHHHHHHHHHHHHHHhhhhcC-ceEEEEEe
Q 015723 205 PLPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVD-GIIAEIEV 278 (402)
Q Consensus 205 pLP~WV~~~g~~~PDI~~tDr~G~rn~E~LSl~~D~~pvl~GRtp~~~Y~dfm~sF~~~fa~~~~~-~vI~eI~V 278 (402)
.+|.|+.+ ++ .|=. .|..++.|.+|.+-..++|.+...- -||.|..+
T Consensus 136 ~~P~~l~~---~~--------GGW~----------------~~~~~~~F~~ya~~~~~~fgd~Vk~WiTfNEPn~ 183 (474)
T PRK09852 136 DVPMHLVT---EY--------GSWR----------------NRKMVEFFSRYARTCFEAFDGLVKYWLTFNEINI 183 (474)
T ss_pred CCCHHHHH---hc--------CCCC----------------CHHHHHHHHHHHHHHHHHhcCcCCeEEeecchhh
Confidence 79999862 11 2222 2445788889988888888874421 24567653
No 15
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=97.75 E-value=8e-05 Score=80.52 Aligned_cols=143 Identities=20% Similarity=0.382 Sum_probs=100.3
Q ss_pred cChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHH---HHHHHHcCCeEEEEEeeeccC-CCCCCCccc
Q 015723 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRL---FQIVRELELKLQVVMSFHECG-GNVGDDVHI 204 (402)
Q Consensus 129 ~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l---~~mvr~~GLKv~vvmsFHqCG-gNVGDt~~I 204 (402)
..++.|+.-|+++|++|.|+|.+-|+|..-|| .||+||||+-.+| +.+++++||-|++=+.=--|+ .|- -
T Consensus 46 ~~pe~W~~~i~k~k~~Gln~IqtYVfWn~Hep-~~g~y~FsG~~DlvkFikl~~~~GLyv~LRiGPyIcaEw~~-----G 119 (649)
T KOG0496|consen 46 STPEMWPDLIKKAKAGGLNVIQTYVFWNLHEP-SPGKYDFSGRYDLVKFIKLIHKAGLYVILRIGPYICAEWNF-----G 119 (649)
T ss_pred CChhhhHHHHHHHHhcCCceeeeeeecccccC-CCCcccccchhHHHHHHHHHHHCCeEEEecCCCeEEecccC-----C
Confidence 47899999999999999999999999999999 8999999996554 667889999997633322221 122 2
Q ss_pred cCChhhhhhhhcCCCeEeeCCCCCccccceecccCccc----ccCCC-------CchHHHHHHHHHHHHHHhhhhcCceE
Q 015723 205 PLPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKER----VLRGR-------TAVEVYFDYMRSFRVEFNEFFVDGII 273 (402)
Q Consensus 205 pLP~WV~~~g~~~PDI~~tDr~G~rn~E~LSl~~D~~p----vl~GR-------tp~~~Y~dfm~sF~~~fa~~~~~~vI 273 (402)
-+|.|+ +..|.|.|...+.....|-=.|.-=-+| +|..+ +.-..|..+-+.+++...++++...+
T Consensus 120 G~P~wL----~~~pg~~~Rt~nepfk~~~~~~~~~iv~~mk~L~~~qGGPIIl~QIENEYG~~~~~~~~~~k~y~~w~a~ 195 (649)
T KOG0496|consen 120 GLPWWL----RNVPGIVFRTDNEPFKAEMERWTTKIVPMMKKLFASQGGPIILVQIENEYGNYLRALGAEGKSYLKWAAV 195 (649)
T ss_pred Ccchhh----hhCCceEEecCChHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEeechhhHHHHHHHHHHHHhhccceE
Confidence 489666 4678888765554433322223322233 33222 11357889999999999999997666
Q ss_pred EEEEeecc
Q 015723 274 AEIEVGLG 281 (402)
Q Consensus 274 ~eI~VGlG 281 (402)
..+..+.|
T Consensus 196 m~~~l~~g 203 (649)
T KOG0496|consen 196 LATSLGTG 203 (649)
T ss_pred EEEecCCC
Confidence 66666655
No 16
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=97.72 E-value=0.00015 Score=66.90 Aligned_cols=126 Identities=11% Similarity=0.186 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeeeee-cCCCc---eecchHHHHHHHHHHHcCCeEEEEEeeec----cCCCCCCCcc
Q 015723 132 EILVNQLKILKSINVDGVMVDCWWGIVE-AHTPQ---VYNWSGYRRLFQIVRELELKLQVVMSFHE----CGGNVGDDVH 203 (402)
Q Consensus 132 ~~l~~dL~~LK~aGVdgV~vdVWWGiVE-~~~p~---~Ydws~Y~~l~~mvr~~GLKv~vvmsFHq----CGgNVGDt~~ 203 (402)
...+++++.||++|++.|+|.+.|...+ +..+. .--|..++++++.++++||+| |+.+|. |.++-+....
T Consensus 21 ~~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~v--ild~h~~~~w~~~~~~~~~~ 98 (281)
T PF00150_consen 21 SITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYV--ILDLHNAPGWANGGDGYGNN 98 (281)
T ss_dssp GSHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EE--EEEEEESTTCSSSTSTTTTH
T ss_pred CCHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeE--EEEeccCccccccccccccc
Confidence 4889999999999999999999995555 43333 346788999999999999999 558898 3333333333
Q ss_pred ccCChhhhh----hhhcCCCeEeeCCCCCccccceecccCcccccCCCC------chHHHHHHHHHHHHHHhhhhc
Q 015723 204 IPLPQWVME----IGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRT------AVEVYFDYMRSFRVEFNEFFV 269 (402)
Q Consensus 204 IpLP~WV~~----~g~~~PDI~~tDr~G~rn~E~LSl~~D~~pvl~GRt------p~~~Y~dfm~sF~~~fa~~~~ 269 (402)
.....|+.+ ..+.+ ++.. --+.|-.=++|...+.. +.+.|.+++++..+++.+.-.
T Consensus 99 ~~~~~~~~~~~~~la~~y-----~~~~-----~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~ 164 (281)
T PF00150_consen 99 DTAQAWFKSFWRALAKRY-----KDNP-----PVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADP 164 (281)
T ss_dssp HHHHHHHHHHHHHHHHHH-----TTTT-----TTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTS
T ss_pred hhhHHHHHhhhhhhcccc-----CCCC-----cEEEEEecCCccccCCccccccccchhhhhHHHHHHHHHHhcCC
Confidence 334445433 12211 1111 12233333667665543 358888999999888888544
No 17
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=97.67 E-value=0.00016 Score=75.79 Aligned_cols=111 Identities=11% Similarity=0.175 Sum_probs=86.8
Q ss_pred cChHHHHHHHHHHHHcCcceEEEeeeeeeeecCC----CceecchHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCccc
Q 015723 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEAHT----PQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHI 204 (402)
Q Consensus 129 ~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~----p~~Ydws~Y~~l~~mvr~~GLKv~vvmsFHqCGgNVGDt~~I 204 (402)
.....+++|++.||++|++.-++.+=|..++|.+ +++-.+..|+++++.++++||+.++-|- | .
T Consensus 66 D~Yhry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~-H-----------~ 133 (477)
T PRK15014 66 DFYGHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLS-H-----------F 133 (477)
T ss_pred CcccccHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEee-C-----------C
Confidence 4667999999999999999999999999999964 3666799999999999999999988554 2 5
Q ss_pred cCChhhhhhhhcCCCeEeeCCCCCccccceecccCcccccCCCCchHHHHHHHHHHHHHHhhhhc-CceEEEEEe
Q 015723 205 PLPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFV-DGIIAEIEV 278 (402)
Q Consensus 205 pLP~WV~~~g~~~PDI~~tDr~G~rn~E~LSl~~D~~pvl~GRtp~~~Y~dfm~sF~~~fa~~~~-~~vI~eI~V 278 (402)
.+|.|+.+ ++ .|-. .|..++.|.+|.+...++|.+... =-||.|..+
T Consensus 134 dlP~~L~~---~y--------GGW~----------------n~~~~~~F~~Ya~~~f~~fgdrVk~WiT~NEp~~ 181 (477)
T PRK15014 134 EMPLHLVQ---QY--------GSWT----------------NRKVVDFFVRFAEVVFERYKHKVKYWMTFNEINN 181 (477)
T ss_pred CCCHHHHH---hc--------CCCC----------------ChHHHHHHHHHHHHHHHHhcCcCCEEEEecCccc
Confidence 79999972 11 2222 234478899999888888877432 026777764
No 18
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=97.62 E-value=0.00017 Score=75.05 Aligned_cols=109 Identities=18% Similarity=0.210 Sum_probs=85.5
Q ss_pred cChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCcee---cchHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCcccc
Q 015723 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVY---NWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIP 205 (402)
Q Consensus 129 ~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Y---dws~Y~~l~~mvr~~GLKv~vvmsFHqCGgNVGDt~~Ip 205 (402)
.....+++|++.||++|++.-+..+=|..++|++++.. -+..|++|++.++++||+-+|.|- | ..
T Consensus 51 d~Y~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~-H-----------~d 118 (469)
T PRK13511 51 DFYHRYPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLH-H-----------FD 118 (469)
T ss_pred chhhhhHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec-C-----------CC
Confidence 56789999999999999999999999999999766544 578899999999999999988654 3 68
Q ss_pred CChhhhhhhhcCCCeEeeCCCCCccccceecccCcccccCCCCchHHHHHHHHHHHHHHhhhhc-CceEEEEEe
Q 015723 206 LPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFV-DGIIAEIEV 278 (402)
Q Consensus 206 LP~WV~~~g~~~PDI~~tDr~G~rn~E~LSl~~D~~pvl~GRtp~~~Y~dfm~sF~~~fa~~~~-~~vI~eI~V 278 (402)
+|.|+.+ +.|-.| |..++.|.+|.+-..++|.+ .. =-||.|..+
T Consensus 119 lP~~L~~------------~GGW~n----------------~~~v~~F~~YA~~~~~~fgd-Vk~W~T~NEP~~ 163 (469)
T PRK13511 119 TPEALHS------------NGDWLN----------------RENIDHFVRYAEFCFEEFPE-VKYWTTFNEIGP 163 (469)
T ss_pred CcHHHHH------------cCCCCC----------------HHHHHHHHHHHHHHHHHhCC-CCEEEEccchhh
Confidence 9999973 233333 34478888888888888877 53 124556543
No 19
>PLN02814 beta-glucosidase
Probab=97.61 E-value=0.00022 Score=75.31 Aligned_cols=110 Identities=17% Similarity=0.214 Sum_probs=87.1
Q ss_pred cChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecc---hHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCcccc
Q 015723 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNW---SGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIP 205 (402)
Q Consensus 129 ~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydw---s~Y~~l~~mvr~~GLKv~vvmsFHqCGgNVGDt~~Ip 205 (402)
.....+++|++.||++|++.-+..+=|..++|+++++.|= ..|++|++.++++||+-+|-|. | -.
T Consensus 74 D~Yhry~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~-H-----------~d 141 (504)
T PLN02814 74 DGYHKYKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLY-H-----------YD 141 (504)
T ss_pred cHHHhhHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEec-C-----------CC
Confidence 4678999999999999999999999999999987777775 7899999999999999988655 3 68
Q ss_pred CChhhhhhhhcCCCeEeeCCCCCccccceecccCcccccCCCCchHHHHHHHHHHHHHHhhhhcC-ceEEEEE
Q 015723 206 LPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVD-GIIAEIE 277 (402)
Q Consensus 206 LP~WV~~~g~~~PDI~~tDr~G~rn~E~LSl~~D~~pvl~GRtp~~~Y~dfm~sF~~~fa~~~~~-~vI~eI~ 277 (402)
||.|+.+ ++ .|-. .|..++.|.+|.+-..++|.+...- -||.|..
T Consensus 142 lP~~L~~---~y--------GGW~----------------n~~~i~~F~~YA~~~f~~fgdrVk~WiT~NEP~ 187 (504)
T PLN02814 142 LPQSLED---EY--------GGWI----------------NRKIIEDFTAFADVCFREFGEDVKLWTTINEAT 187 (504)
T ss_pred CCHHHHH---hc--------CCcC----------------ChhHHHHHHHHHHHHHHHhCCcCCEEEeccccc
Confidence 9999973 10 2222 3455888999999888888885431 1455655
No 20
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=97.61 E-value=0.00021 Score=74.62 Aligned_cols=110 Identities=18% Similarity=0.182 Sum_probs=85.9
Q ss_pred ccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCcee---cchHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCccc
Q 015723 128 LVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVY---NWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHI 204 (402)
Q Consensus 128 ~~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Y---dws~Y~~l~~mvr~~GLKv~vvmsFHqCGgNVGDt~~I 204 (402)
......+++|++.||++|++.-+..+-|..++|.++++. -...|+++++.++++||+-+|.|- | .
T Consensus 49 ~d~yhry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~-H-----------~ 116 (467)
T TIGR01233 49 SDFYHKYPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLH-H-----------F 116 (467)
T ss_pred CchhhhHHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEecc-C-----------C
Confidence 356789999999999999999999999999999877766 367899999999999999988554 3 6
Q ss_pred cCChhhhhhhhcCCCeEeeCCCCCccccceecccCcccccCCCCchHHHHHHHHHHHHHHhhhhc-CceEEEEEe
Q 015723 205 PLPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFV-DGIIAEIEV 278 (402)
Q Consensus 205 pLP~WV~~~g~~~PDI~~tDr~G~rn~E~LSl~~D~~pvl~GRtp~~~Y~dfm~sF~~~fa~~~~-~~vI~eI~V 278 (402)
.||.||.+ +.|=.| |.-++.|.+|.+-..++|.+ .. =-||.|..+
T Consensus 117 dlP~~L~~------------~GGW~n----------------~~~v~~F~~YA~~~f~~fgd-Vk~WiT~NEP~~ 162 (467)
T TIGR01233 117 DTPEALHS------------NGDFLN----------------RENIEHFIDYAAFCFEEFPE-VNYWTTFNEIGP 162 (467)
T ss_pred CCcHHHHH------------cCCCCC----------------HHHHHHHHHHHHHHHHHhCC-CCEEEEecchhh
Confidence 79999972 233333 45578888888888888876 32 124566543
No 21
>PLN02849 beta-glucosidase
Probab=97.56 E-value=0.0003 Score=74.26 Aligned_cols=111 Identities=15% Similarity=0.217 Sum_probs=87.5
Q ss_pred cChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceec---chHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCcccc
Q 015723 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYN---WSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIP 205 (402)
Q Consensus 129 ~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Yd---ws~Y~~l~~mvr~~GLKv~vvmsFHqCGgNVGDt~~Ip 205 (402)
.....+++|++.||++|++.-+..+=|..++|++.++.| ...|+++++.++++||+-+|-|. | ..
T Consensus 76 D~YhrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~-H-----------~d 143 (503)
T PLN02849 76 DGYHKYKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLF-H-----------YD 143 (503)
T ss_pred cHHHhHHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeec-C-----------CC
Confidence 467899999999999999999999999999998766555 67899999999999999988554 3 68
Q ss_pred CChhhhhhhhcCCCeEeeCCCCCccccceecccCcccccCCCCchHHHHHHHHHHHHHHhhhhcC-ceEEEEEe
Q 015723 206 LPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVD-GIIAEIEV 278 (402)
Q Consensus 206 LP~WV~~~g~~~PDI~~tDr~G~rn~E~LSl~~D~~pvl~GRtp~~~Y~dfm~sF~~~fa~~~~~-~vI~eI~V 278 (402)
+|.|+.+ ++ .|-. .|.-++.|.+|.+-..++|.+...- -||.|..+
T Consensus 144 lP~~L~~---~y--------GGW~----------------nr~~v~~F~~YA~~~f~~fgDrVk~WiT~NEP~~ 190 (503)
T PLN02849 144 HPQYLED---DY--------GGWI----------------NRRIIKDFTAYADVCFREFGNHVKFWTTINEANI 190 (503)
T ss_pred CcHHHHH---hc--------CCcC----------------CchHHHHHHHHHHHHHHHhcCcCCEEEEecchhh
Confidence 9999973 11 2322 3455889999999999999885431 14556653
No 22
>PLN02998 beta-glucosidase
Probab=97.54 E-value=0.00031 Score=74.05 Aligned_cols=111 Identities=16% Similarity=0.239 Sum_probs=87.5
Q ss_pred cChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceec---chHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCcccc
Q 015723 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYN---WSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIP 205 (402)
Q Consensus 129 ~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Yd---ws~Y~~l~~mvr~~GLKv~vvmsFHqCGgNVGDt~~Ip 205 (402)
.....+++|++.||++|++.-+..+-|..|+|++++.+| ...|+++++.++++||+-+|-|- | ..
T Consensus 79 D~Yhry~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~-H-----------~d 146 (497)
T PLN02998 79 DQYHKYKEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLH-H-----------FD 146 (497)
T ss_pred cHHHhhHHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEec-C-----------CC
Confidence 567899999999999999999999999999998777664 67899999999999999988554 3 67
Q ss_pred CChhhhhhhhcCCCeEeeCCCCCccccceecccCcccccCCCCchHHHHHHHHHHHHHHhhhhcC-ceEEEEEe
Q 015723 206 LPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVD-GIIAEIEV 278 (402)
Q Consensus 206 LP~WV~~~g~~~PDI~~tDr~G~rn~E~LSl~~D~~pvl~GRtp~~~Y~dfm~sF~~~fa~~~~~-~vI~eI~V 278 (402)
+|.|+.+ ++ .|- ..|..++.|.+|.+-..++|.+...- -||.|..+
T Consensus 147 lP~~L~~---~y--------GGW----------------~n~~~v~~F~~YA~~~~~~fgdrVk~WiT~NEP~~ 193 (497)
T PLN02998 147 LPQALED---EY--------GGW----------------LSQEIVRDFTAYADTCFKEFGDRVSHWTTINEVNV 193 (497)
T ss_pred CCHHHHH---hh--------CCc----------------CCchHHHHHHHHHHHHHHHhcCcCCEEEEccCcch
Confidence 9999973 11 222 23455899999999999998884431 14556653
No 23
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=97.37 E-value=0.00064 Score=71.22 Aligned_cols=111 Identities=12% Similarity=0.169 Sum_probs=85.8
Q ss_pred cChHHHHHHHHHHHHcCcceEEEeeeeeeeecCC-Cc---eecchHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCccc
Q 015723 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEAHT-PQ---VYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHI 204 (402)
Q Consensus 129 ~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~-p~---~Ydws~Y~~l~~mvr~~GLKv~vvmsFHqCGgNVGDt~~I 204 (402)
.....+++|++.||++|++.-+..+-|..++|.+ ++ +=-...|++|++.++++||+-+|-|- | -
T Consensus 64 D~Yhry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~-H-----------~ 131 (476)
T PRK09589 64 DFYHRYKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLS-H-----------F 131 (476)
T ss_pred cHHHhhHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec-C-----------C
Confidence 5678999999999999999999999999999975 23 33478899999999999999988654 3 6
Q ss_pred cCChhhhhhhhcCCCeEeeCCCCCccccceecccCcccccCCCCchHHHHHHHHHHHHHHhhhhcC-ceEEEEEe
Q 015723 205 PLPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVD-GIIAEIEV 278 (402)
Q Consensus 205 pLP~WV~~~g~~~PDI~~tDr~G~rn~E~LSl~~D~~pvl~GRtp~~~Y~dfm~sF~~~fa~~~~~-~vI~eI~V 278 (402)
.||.|+.+ + ..|=. .|..++.|.+|.+-..++|.+...- -||.|..+
T Consensus 132 dlP~~L~~---~--------yGGW~----------------n~~~i~~F~~YA~~~f~~fgdrVk~WiT~NEp~~ 179 (476)
T PRK09589 132 EMPYHLVT---E--------YGGWR----------------NRKLIDFFVRFAEVVFTRYKDKVKYWMTFNEINN 179 (476)
T ss_pred CCCHHHHH---h--------cCCcC----------------ChHHHHHHHHHHHHHHHHhcCCCCEEEEecchhh
Confidence 89999962 1 12322 2455788999998888888875431 25667654
No 24
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=97.36 E-value=0.00075 Score=70.75 Aligned_cols=111 Identities=14% Similarity=0.204 Sum_probs=85.6
Q ss_pred cChHHHHHHHHHHHHcCcceEEEeeeeeeeecCC-Cce---ecchHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCccc
Q 015723 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEAHT-PQV---YNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHI 204 (402)
Q Consensus 129 ~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~-p~~---Ydws~Y~~l~~mvr~~GLKv~vvmsFHqCGgNVGDt~~I 204 (402)
.....+++|++.||++|++.-+..+-|..|+|.+ +++ =-...|++|++.++++||+-+|-|- | -
T Consensus 70 d~Yhry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~-H-----------~ 137 (478)
T PRK09593 70 DMYHHYKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTIT-H-----------F 137 (478)
T ss_pred chHHhhHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec-c-----------c
Confidence 5678999999999999999999999999999975 333 3468999999999999999988554 3 6
Q ss_pred cCChhhhhhhhcCCCeEeeCCCCCccccceecccCcccccCCCCchHHHHHHHHHHHHHHhhhhcC-ceEEEEEe
Q 015723 205 PLPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVD-GIIAEIEV 278 (402)
Q Consensus 205 pLP~WV~~~g~~~PDI~~tDr~G~rn~E~LSl~~D~~pvl~GRtp~~~Y~dfm~sF~~~fa~~~~~-~vI~eI~V 278 (402)
.||.|+.+ ++ .|-. .|..++.|.+|.+-..++|.+...- -||.|..+
T Consensus 138 dlP~~L~~---~~--------GGW~----------------n~~~v~~F~~YA~~~~~~fgdrVk~WiT~NEP~~ 185 (478)
T PRK09593 138 DCPMHLIE---EY--------GGWR----------------NRKMVGFYERLCRTLFTRYKGLVKYWLTFNEINM 185 (478)
T ss_pred CCCHHHHh---hc--------CCCC----------------ChHHHHHHHHHHHHHHHHhcCcCCEEEeecchhh
Confidence 89999972 11 2322 2455788999998888888875431 14566654
No 25
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=97.28 E-value=0.004 Score=55.19 Aligned_cols=110 Identities=14% Similarity=0.187 Sum_probs=74.1
Q ss_pred HHHHHHHHcCcceEEEee---e-ee----eeecCCCceecchHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCccccCC
Q 015723 136 NQLKILKSINVDGVMVDC---W-WG----IVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLP 207 (402)
Q Consensus 136 ~dL~~LK~aGVdgV~vdV---W-WG----iVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsFHqCGgNVGDt~~IpLP 207 (402)
+-++.||++|||.|++.. + |. .+-+..|+- .-.-+.++++.+++.||+|.+-++|+ .-
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L-~~Dllge~v~a~h~~Girv~ay~~~~-------------~d 69 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGL-KRDLLGEQVEACHERGIRVPAYFDFS-------------WD 69 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCC-CcCHHHHHHHHHHHCCCEEEEEEeee-------------cC
Confidence 446789999999999943 2 32 222223333 47889999999999999999988862 45
Q ss_pred hhhhhhhhcCCCeEeeCCCCCc--cccceecccCcccccCCCCchHHHHHHHHHHHHHHhhhh
Q 015723 208 QWVMEIGQNNPEIYFTDREGRR--NSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFF 268 (402)
Q Consensus 208 ~WV~~~g~~~PDI~~tDr~G~r--n~E~LSl~~D~~pvl~GRtp~~~Y~dfm~sF~~~fa~~~ 268 (402)
.++. +++||=+.+|++|+. ..+....+.-.+++ ..-|+||+....+++.+.+
T Consensus 70 ~~~~---~~HPeW~~~~~~G~~~~~~~~~~~~~~~~c~------ns~Y~e~~~~~i~Ei~~~y 123 (132)
T PF14871_consen 70 EDAA---ERHPEWFVRDADGRPMRGERFGYPGWYTCCL------NSPYREFLLEQIREILDRY 123 (132)
T ss_pred hHHH---HhCCceeeECCCCCCcCCCCcCCCCceecCC------CccHHHHHHHHHHHHHHcC
Confidence 5555 789999999999982 22222211001111 2358899888888877633
No 26
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=97.26 E-value=0.035 Score=55.21 Aligned_cols=204 Identities=17% Similarity=0.189 Sum_probs=128.2
Q ss_pred ccChHHHHHHHHHHHHcCcceEEEeeee-ee------eecCC------Cce-ecchHHHHHHHHHHHcCCeEEEEEeeec
Q 015723 128 LVDPEILVNQLKILKSINVDGVMVDCWW-GI------VEAHT------PQV-YNWSGYRRLFQIVRELELKLQVVMSFHE 193 (402)
Q Consensus 128 ~~~~~~l~~dL~~LK~aGVdgV~vdVWW-Gi------VE~~~------p~~-Ydws~Y~~l~~mvr~~GLKv~vvmsFHq 193 (402)
+..++.+++-|+.||++|+|.|-+.|++ |. +||.+ +++ -.|..+..+++.+++.||+|++=|-+-.
T Consensus 15 ~~~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~ 94 (311)
T PF02638_consen 15 WPSKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGF 94 (311)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeec
Confidence 3478899999999999999999999994 42 34321 111 1377899999999999999999553211
Q ss_pred cCCCCCCCccccCChhhhhhhhcCCCeEeeCCCCCccccceecccCcccccCCCCchHHHHHHHHHHHHHHhhhhcCceE
Q 015723 194 CGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGII 273 (402)
Q Consensus 194 CGgNVGDt~~IpLP~WV~~~g~~~PDI~~tDr~G~rn~E~LSl~~D~~pvl~GRtp~~~Y~dfm~sF~~~fa~~~~~~vI 273 (402)
-..+.+. ..-.-|.|+. .++|+...+...+..+.-+|..+ .+.=++|+.+...++.+.+. |
T Consensus 95 ~~~~~~~-~~~~~p~~~~---~~~~~~~~~~~~~~~~~~~lnP~------------~PeVr~~i~~~v~Eiv~~Yd---v 155 (311)
T PF02638_consen 95 NAPDVSH-ILKKHPEWFA---VNHPGWVRTYEDANGGYYWLNPG------------HPEVRDYIIDIVKEIVKNYD---V 155 (311)
T ss_pred CCCchhh-hhhcCchhhe---ecCCCceeecccCCCCceEECCC------------CHHHHHHHHHHHHHHHhcCC---C
Confidence 1111111 1123577876 56677666655544444456665 88899999999999988664 5
Q ss_pred EEEEeeccCCCccCCCCCCCCCCCccCCCcccccccHHHHHHHHHHHHHhCCcccCCCCCCCCCCCCCCCCCCccccCCc
Q 015723 274 AEIEVGLGPCGELRYPTYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFWARGPGNAGSYNSTPHETGFFRDGGE 353 (402)
Q Consensus 274 ~eI~VGlGP~GELRYPSyp~~~gW~~pGiGEFQCYDk~~~~~fr~~a~~kgn~~WG~gP~nag~yn~~P~~t~FF~~gg~ 353 (402)
..|.+= --|||. . .-| ||....+.|++.-.. .|. ..|++.
T Consensus 156 DGIhlD-----dy~yp~---~------~~g----~~~~~~~~y~~~~g~--------~~~------~~~~d~-------- 195 (311)
T PF02638_consen 156 DGIHLD-----DYFYPP---P------SFG----YDFPDVAAYEKYTGK--------DPF------SSPEDD-------- 195 (311)
T ss_pred CeEEec-----cccccc---c------cCC----CCCccHHHHHHhcCc--------CCC------CCccch--------
Confidence 555432 123331 1 112 566667777763210 010 011110
Q ss_pred cccccccchHHHhHHHHHhHHHHHHHHHHHhcCCceeeEEEeee
Q 015723 354 YDSYYGRFFLNWYSQVLIDHGDRVFALANLAFEGTCISAKVSHQ 397 (402)
Q Consensus 354 ~~S~YG~fFL~WYs~~Li~HgdrvL~~A~~~F~~~~l~aKV~GI 397 (402)
...+|=.+.+-+--.+|-...+++=+.+.+++=..|+
T Consensus 196 -------~W~~WRr~~I~~~V~~i~~~ik~~kP~v~~sisp~g~ 232 (311)
T PF02638_consen 196 -------AWTQWRRDNINNFVKRIYDAIKAIKPWVKFSISPFGI 232 (311)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeecc
Confidence 1778888888777777777777776777777655544
No 27
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=96.97 E-value=0.0093 Score=62.96 Aligned_cols=112 Identities=17% Similarity=0.237 Sum_probs=86.4
Q ss_pred cChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCc-eec---chHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCccc
Q 015723 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQ-VYN---WSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHI 204 (402)
Q Consensus 129 ~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~-~Yd---ws~Y~~l~~mvr~~GLKv~vvmsFHqCGgNVGDt~~I 204 (402)
......++|++.||++|++.-++.+=|..+-|.+.+ ..| -..|++||+-+.+.||+..+-|+ | .
T Consensus 56 d~YhrYkeDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~-H-----------f 123 (460)
T COG2723 56 DFYHRYKEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLY-H-----------F 123 (460)
T ss_pred chhhhhHHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec-c-----------c
Confidence 457899999999999999999999999999996655 455 56799999999999999988666 3 6
Q ss_pred cCChhhhhhhhcCCCeEeeCCCCCccccceecccCcccccCCCCchHHHHHHHHHHHHHHhhhhcC-ceEEEEEee
Q 015723 205 PLPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVD-GIIAEIEVG 279 (402)
Q Consensus 205 pLP~WV~~~g~~~PDI~~tDr~G~rn~E~LSl~~D~~pvl~GRtp~~~Y~dfm~sF~~~fa~~~~~-~vI~eI~VG 279 (402)
.+|.||. +++ .|= ..|..++.|..|.+-..++|.++..- -|..|+.|=
T Consensus 124 d~P~~L~---~~y--------gGW----------------~nR~~i~~F~~ya~~vf~~f~dkVk~W~TFNE~n~~ 172 (460)
T COG2723 124 DLPLWLQ---KPY--------GGW----------------ENRETVDAFARYAATVFERFGDKVKYWFTFNEPNVV 172 (460)
T ss_pred CCcHHHh---hcc--------CCc----------------cCHHHHHHHHHHHHHHHHHhcCcceEEEEecchhhh
Confidence 8999998 332 232 23566888888888888888765431 144455443
No 28
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=96.45 E-value=0.015 Score=55.46 Aligned_cols=32 Identities=22% Similarity=0.479 Sum_probs=30.3
Q ss_pred eeeeecCCCceecchHHHHHHHHHHHcCCeEEE
Q 015723 155 WGIVEAHTPQVYNWSGYRRLFQIVRELELKLQV 187 (402)
Q Consensus 155 WGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~v 187 (402)
|+.+|| .+|+|||+..+++++.++++||++..
T Consensus 3 W~~~ep-~~G~~n~~~~D~~~~~a~~~gi~v~g 34 (254)
T smart00633 3 WDSTEP-SRGQFNFSGADAIVNFAKENGIKVRG 34 (254)
T ss_pred cccccC-CCCccChHHHHHHHHHHHHCCCEEEE
Confidence 899999 89999999999999999999999854
No 29
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=95.88 E-value=0.086 Score=48.33 Aligned_cols=57 Identities=14% Similarity=0.291 Sum_probs=44.0
Q ss_pred cChHHHHHHHHHHHHcCcceEEEeeeeeeeecCC--Ccee-cc-------hHHHHHHHHHHHcCCeEEE
Q 015723 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEAHT--PQVY-NW-------SGYRRLFQIVRELELKLQV 187 (402)
Q Consensus 129 ~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~--p~~Y-dw-------s~Y~~l~~mvr~~GLKv~v 187 (402)
-+++.|++.|+.||++|++.|-|- |.-.+... |-++ ++ +.+..+++.+.+.|+||.+
T Consensus 17 ~~~~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~ 83 (166)
T PF14488_consen 17 WTPAQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFV 83 (166)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEE
Confidence 478999999999999999999776 55555422 2222 11 3789999999999999976
No 30
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=95.35 E-value=0.053 Score=56.69 Aligned_cols=102 Identities=19% Similarity=0.281 Sum_probs=64.2
Q ss_pred hHHHHHHHHHHH-HcCcceEEEeeeeeee-------ec-CCCc--eecchHHHHHHHHHHHcCCeEEEEEeeeccCCCCC
Q 015723 131 PEILVNQLKILK-SINVDGVMVDCWWGIV-------EA-HTPQ--VYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVG 199 (402)
Q Consensus 131 ~~~l~~dL~~LK-~aGVdgV~vdVWWGiV-------E~-~~p~--~Ydws~Y~~l~~mvr~~GLKv~vvmsFHqCGgNVG 199 (402)
...++++|+.++ ++|+.-|++ |++. .. .+++ .|||+..|++++.+.++|||..+-|+|
T Consensus 38 ~~~~q~~l~~~~~~~gf~yvR~---h~l~~ddm~~~~~~~~~~~~~Ynf~~lD~i~D~l~~~g~~P~vel~f-------- 106 (486)
T PF01229_consen 38 RADWQEQLRELQEELGFRYVRF---HGLFSDDMMVYSESDEDGIPPYNFTYLDQILDFLLENGLKPFVELGF-------- 106 (486)
T ss_dssp BHHHHHHHHHHHCCS--SEEEE---S-TTSTTTT-EEEEETTEEEEE--HHHHHHHHHHHHCT-EEEEEE-S--------
T ss_pred hHHHHHHHHHHHhccCceEEEE---EeeccCchhhccccccCCCCcCChHHHHHHHHHHHHcCCEEEEEEEe--------
Confidence 457888998886 699999975 4444 11 2233 399999999999999999999999997
Q ss_pred CCccccCChhhhhhhhcCCCeEeeCCCCCccccceecccCcccccCCCCchHHHHHHHHHHHHHHhhhhc
Q 015723 200 DDVHIPLPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFV 269 (402)
Q Consensus 200 Dt~~IpLP~WV~~~g~~~PDI~~tDr~G~rn~E~LSl~~D~~pvl~GRtp~~~Y~dfm~sF~~~fa~~~~ 269 (402)
-|.++.. ....+ |. ..|+..+ -.-.+.+++++++|.+++.+.+|
T Consensus 107 ------~p~~~~~---~~~~~-~~-~~~~~~p---------------p~~~~~W~~lv~~~~~h~~~RYG 150 (486)
T PF01229_consen 107 ------MPMALAS---GYQTV-FW-YKGNISP---------------PKDYEKWRDLVRAFARHYIDRYG 150 (486)
T ss_dssp ------B-GGGBS---S--EE-TT-TTEE-S----------------BS-HHHHHHHHHHHHHHHHHHHH
T ss_pred ------chhhhcC---CCCcc-cc-ccCCcCC---------------cccHHHHHHHHHHHHHHHHhhcC
Confidence 6677752 21111 11 1111111 12279999999999999999877
No 31
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=95.01 E-value=0.079 Score=52.68 Aligned_cols=101 Identities=20% Similarity=0.387 Sum_probs=68.0
Q ss_pred HHHHHHHcCcceEEEe-ee-eeeeecCCCceecchHHHHHHHHHHHcCCeEEE-EEeeeccCCCCCCCccccCChhhhhh
Q 015723 137 QLKILKSINVDGVMVD-CW-WGIVEAHTPQVYNWSGYRRLFQIVRELELKLQV-VMSFHECGGNVGDDVHIPLPQWVMEI 213 (402)
Q Consensus 137 dL~~LK~aGVdgV~vd-VW-WGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~v-vmsFHqCGgNVGDt~~IpLP~WV~~~ 213 (402)
..+.+=....+.|+.. .. |+.+|+ .+|+|||+.-+++++-++++|+++.- .|..|. ..|.|+.+.
T Consensus 26 ~~~~~~~~~Fn~~t~eN~~Kw~~~e~-~~g~~~~~~~D~~~~~a~~~g~~vrGH~LvW~~-----------~~P~w~~~~ 93 (320)
T PF00331_consen 26 RYRELFAKHFNSVTPENEMKWGSIEP-EPGRFNFESADAILDWARENGIKVRGHTLVWHS-----------QTPDWVFNL 93 (320)
T ss_dssp HHHHHHHHH-SEEEESSTTSHHHHES-BTTBEE-HHHHHHHHHHHHTT-EEEEEEEEESS-----------SS-HHHHTS
T ss_pred HHHHHHHHhCCeeeeccccchhhhcC-CCCccCccchhHHHHHHHhcCcceeeeeEEEcc-----------cccceeeec
Confidence 4666666788888876 34 999999 79999999999999999999999972 122331 579999832
Q ss_pred hhcCCCeEeeCCCCCccccceecccCcccccCCCCchHHHHHHHHHHHHHHhhhhcC-ceEEEEEe
Q 015723 214 GQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVD-GIIAEIEV 278 (402)
Q Consensus 214 g~~~PDI~~tDr~G~rn~E~LSl~~D~~pvl~GRtp~~~Y~dfm~sF~~~fa~~~~~-~vI~eI~V 278 (402)
..+.... -+..++.|+.+.+++...+++ +.|....|
T Consensus 94 -----------~~~~~~~------------------~~~~~~~l~~~I~~v~~~y~~~g~i~~WDV 130 (320)
T PF00331_consen 94 -----------ANGSPDE------------------KEELRARLENHIKTVVTRYKDKGRIYAWDV 130 (320)
T ss_dssp -----------TTSSBHH------------------HHHHHHHHHHHHHHHHHHTTTTTTESEEEE
T ss_pred -----------cCCCccc------------------HHHHHHHHHHHHHHHHhHhccccceEEEEE
Confidence 0111000 246788888888888887775 45555544
No 32
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=93.90 E-value=0.1 Score=53.07 Aligned_cols=53 Identities=21% Similarity=0.340 Sum_probs=40.0
Q ss_pred HHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEEEEeeec
Q 015723 136 NQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHE 193 (402)
Q Consensus 136 ~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsFHq 193 (402)
.-|+.||+.||+.|++-+| |.|...|..|...-.++++.++++||||. |.||-
T Consensus 28 d~~~ilk~~G~N~vRlRvw---v~P~~~g~~~~~~~~~~akrak~~Gm~vl--ldfHY 80 (332)
T PF07745_consen 28 DLFQILKDHGVNAVRLRVW---VNPYDGGYNDLEDVIALAKRAKAAGMKVL--LDFHY 80 (332)
T ss_dssp -HHHHHHHTT--EEEEEE----SS-TTTTTTSHHHHHHHHHHHHHTT-EEE--EEE-S
T ss_pred CHHHHHHhcCCCeEEEEec---cCCcccccCCHHHHHHHHHHHHHCCCeEE--Eeecc
Confidence 4578899999999999997 66643588999999999999999999995 59994
No 33
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=93.54 E-value=0.31 Score=52.49 Aligned_cols=101 Identities=21% Similarity=0.223 Sum_probs=77.9
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCC--ceecch---HHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCccc
Q 015723 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTP--QVYNWS---GYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHI 204 (402)
Q Consensus 130 ~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p--~~Ydws---~Y~~l~~mvr~~GLKv~vvmsFHqCGgNVGDt~~I 204 (402)
..-..++|++.||++||++-+..+-|+.+=|.+. +.-|-. +|..|++-+.++||+-.|-| || -
T Consensus 89 ~Yh~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTL-fH-----------w 156 (524)
T KOG0626|consen 89 FYHRYKEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTL-FH-----------W 156 (524)
T ss_pred hhhhhHHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEE-ec-----------C
Confidence 4458999999999999999999999999999776 446654 69999999999999998855 45 4
Q ss_pred cCChhhhhhhhcCCCeEeeCCCCCccccceecccCcccccCCCCchHHHHHHHHHHHHHHhhhhc
Q 015723 205 PLPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFV 269 (402)
Q Consensus 205 pLP~WV~~~g~~~PDI~~tDr~G~rn~E~LSl~~D~~pvl~GRtp~~~Y~dfm~sF~~~fa~~~~ 269 (402)
-+|+|+.+ +.|- +-.++.++.+++|.+--=++|.+.-+
T Consensus 157 DlPq~LeD------------eYgG---------------wLn~~ivedF~~yA~~CF~~fGDrVK 194 (524)
T KOG0626|consen 157 DLPQALED------------EYGG---------------WLNPEIVEDFRDYADLCFQEFGDRVK 194 (524)
T ss_pred CCCHHHHH------------Hhcc---------------ccCHHHHHHHHHHHHHHHHHhcccce
Confidence 69999972 2222 22344578888888777777766543
No 34
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=93.47 E-value=0.47 Score=46.05 Aligned_cols=80 Identities=15% Similarity=0.409 Sum_probs=56.2
Q ss_pred HHHHHHHHHHcCcceEEEeeeeeeeecCCCceec---chHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCccccCChhh
Q 015723 134 LVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYN---WSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWV 210 (402)
Q Consensus 134 l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Yd---ws~Y~~l~~mvr~~GLKv~vvmsFHqCGgNVGDt~~IpLP~WV 210 (402)
+.+.++++.++|+++|.++.-|+.-.--+|..|. +-+++++++.+++.|.++ .+|-|| |.+ ++=.++
T Consensus 170 ~~~~~~~~~~~G~d~i~i~d~~~~~~~isp~~f~e~~~p~~k~i~~~i~~~g~~~----~lH~cG-~~~-----~~~~~l 239 (330)
T cd03465 170 IIRYADALIEAGADGIYISDPWASSSILSPEDFKEFSLPYLKKVFDAIKALGGPV----IHHNCG-DTA-----PILELM 239 (330)
T ss_pred HHHHHHHHHHhCCCEEEEeCCccccCCCCHHHHHHHhhHHHHHHHHHHHHcCCce----EEEECC-Cch-----hHHHHH
Confidence 3455667778899999999988754311355555 999999999999999887 669995 432 344455
Q ss_pred hhhhhcCCCeEeeCCC
Q 015723 211 MEIGQNNPEIYFTDRE 226 (402)
Q Consensus 211 ~~~g~~~PDI~~tDr~ 226 (402)
. +...|++-.|..
T Consensus 240 ~---~~~~d~~~~d~~ 252 (330)
T cd03465 240 A---DLGADVFSIDVT 252 (330)
T ss_pred H---HhCCCeEeeccc
Confidence 5 334577776654
No 35
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=93.05 E-value=0.36 Score=47.54 Aligned_cols=70 Identities=9% Similarity=0.243 Sum_probs=54.4
Q ss_pred CccEEEeeccceeeCCCccc----ChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeE
Q 015723 110 YVPVYVMLPLGIIDMNCELV----DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKL 185 (402)
Q Consensus 110 ~vpvyVMlPLd~V~~~~~~~----~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv 185 (402)
.+||+||+=-- .+.+. .-+.+.+|++.+|++|++||.+++- ..+++.|....++|++.++ |+++
T Consensus 51 ~ipv~vMIRPR----~gdF~Ys~~E~~~M~~di~~~~~~GadGvV~G~L------~~dg~vD~~~~~~Li~~a~--~~~v 118 (248)
T PRK11572 51 TIPVHPIIRPR----GGDFCYSDGEFAAMLEDIATVRELGFPGLVTGVL------DVDGHVDMPRMRKIMAAAG--PLAV 118 (248)
T ss_pred CCCeEEEEecC----CCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEeeE------CCCCCcCHHHHHHHHHHhc--CCce
Confidence 48999997432 12222 4578999999999999999998764 3589999999999999994 7888
Q ss_pred EEEEee
Q 015723 186 QVVMSF 191 (402)
Q Consensus 186 ~vvmsF 191 (402)
..=++|
T Consensus 119 TFHRAf 124 (248)
T PRK11572 119 TFHRAF 124 (248)
T ss_pred EEechh
Confidence 555565
No 36
>PRK10785 maltodextrin glucosidase; Provisional
Probab=92.65 E-value=3 Score=45.24 Aligned_cols=156 Identities=18% Similarity=0.274 Sum_probs=93.6
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceec-------------chHHHHHHHHHHHcCCeEEEEEeeeccCC
Q 015723 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYN-------------WSGYRRLFQIVRELELKLQVVMSFHECGG 196 (402)
Q Consensus 130 ~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Yd-------------ws~Y~~l~~mvr~~GLKv~vvmsFHqCGg 196 (402)
|-+.+.+.|..||++||++|-+.=. .|..+--.|| ...+++|++.+++.||||++=+-|.-||.
T Consensus 177 Dl~GI~~kLdYL~~LGv~~I~L~Pi---f~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~V~NH~~~ 253 (598)
T PRK10785 177 DLDGISEKLPYLKKLGVTALYLNPI---FTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDGVFNHTGD 253 (598)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCc---ccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEECCCcCCC
Confidence 5689999999999999999988653 2322222333 35789999999999999988777755553
Q ss_pred CCCCCccccCChhhhhhhh-----------cCCCeEeeCCCCCccccceec-ccCcccccCCCCchHHHHHHHHHHHH-H
Q 015723 197 NVGDDVHIPLPQWVMEIGQ-----------NNPEIYFTDREGRRNSECLTW-GIDKERVLRGRTAVEVYFDYMRSFRV-E 263 (402)
Q Consensus 197 NVGDt~~IpLP~WV~~~g~-----------~~PDI~~tDr~G~rn~E~LSl-~~D~~pvl~GRtp~~~Y~dfm~sF~~-~ 263 (402)
+ -| |+....+ .+.|-+..+..|+ +.+| +++.+|-|. +-.+..++++..=.+ -
T Consensus 254 ----~----~~-~f~~~~~~~~ga~~~~~spy~dwf~~~~~~~----~~~w~g~~~lPdLN--~~np~v~~~l~~~~~~v 318 (598)
T PRK10785 254 ----S----HP-WFDRHNRGTGGACHHPDSPWRDWYSFSDDGR----ALDWLGYASLPKLD--FQSEEVVNEIYRGEDSI 318 (598)
T ss_pred ----C----CH-HHHHhhccccccccCCCCCcceeeEECCCCC----cCCcCCCCcCcccc--CCCHHHHHHHHhhhhHH
Confidence 1 22 6654321 1224444444442 3454 455677665 335567777653111 2
Q ss_pred HhhhhcCceEEEEEeeccCCCccCCCCCC-CCCCCcc---CCCc--ccccccHHHHHHHHHHHHHhC
Q 015723 264 FNEFFVDGIIAEIEVGLGPCGELRYPTYP-AKHGWKY---PGIG--EFQCYDKYLMKSLSKAAEARG 324 (402)
Q Consensus 264 fa~~~~~~vI~eI~VGlGP~GELRYPSyp-~~~gW~~---pGiG--EFQCYDk~~~~~fr~~a~~kg 324 (402)
+.-.+. .+ .++||++ .-++ ...+-+....+.|++.+++..
T Consensus 319 ~~~Wl~---------------------~~~giDG~RlDva~~v~~~~~~~~~~~f~~~~~~~vk~~~ 364 (598)
T PRK10785 319 VRHWLK---------------------APYNIDGWRLDVVHMLGEGGGARNNLQHVAGITQAAKEEN 364 (598)
T ss_pred HHHhhc---------------------CCCCCcEEEEecHhHhccccCccccHHHHHHHHHHHHhhC
Confidence 222221 11 3578888 1122 123445566788999888765
No 37
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=92.58 E-value=1.4 Score=47.61 Aligned_cols=63 Identities=17% Similarity=0.303 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHcCcceEEE-eee-eee-eecCCCceec-------------------------chHHHHHHHHHHHcCC
Q 015723 132 EILVNQLKILKSINVDGVMV-DCW-WGI-VEAHTPQVYN-------------------------WSGYRRLFQIVRELEL 183 (402)
Q Consensus 132 ~~l~~dL~~LK~aGVdgV~v-dVW-WGi-VE~~~p~~Yd-------------------------ws~Y~~l~~mvr~~GL 183 (402)
..+.+.|..||++||+.|.+ +++ ... -|......|+ ...++++++.++++||
T Consensus 164 ~g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi 243 (605)
T TIGR02104 164 NGVSTGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENGI 243 (605)
T ss_pred ccchhHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCCC
Confidence 45667899999999999976 332 111 1111111121 2569999999999999
Q ss_pred eEEEEEee-ecc
Q 015723 184 KLQVVMSF-HEC 194 (402)
Q Consensus 184 Kv~vvmsF-HqC 194 (402)
+|++=+-| |-|
T Consensus 244 ~VilDvV~NH~~ 255 (605)
T TIGR02104 244 RVIMDVVYNHTY 255 (605)
T ss_pred EEEEEEEcCCcc
Confidence 99887777 544
No 38
>cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the C-terminal barrel, and a few single-barrel sequences most similar to the C-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Sidechains from
Probab=92.34 E-value=1.9 Score=42.52 Aligned_cols=131 Identities=14% Similarity=0.048 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHcCcceEEEeee-eeeeecCCCceecchHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCccccCChh-
Q 015723 132 EILVNQLKILKSINVDGVMVDCW-WGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQW- 209 (402)
Q Consensus 132 ~~l~~dL~~LK~aGVdgV~vdVW-WGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsFHqCGgNVGDt~~IpLP~W- 209 (402)
+++.+.+++|.++|++.|.+|+= |+.+=........-.+.+++.+.+.+.+....+ ..|-|.||...+....-+-|
T Consensus 155 ~~~~~e~~~l~~aG~~~iQiDEP~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v--~lHiC~G~~~~~~~~~~~y~~ 232 (332)
T cd03311 155 LALREEIRDLYDAGCRYIQIDEPALAEGLPLEPDDLAADYLKWANEALADRPDDTQI--HTHICYGNFRSTWAAEGGYEP 232 (332)
T ss_pred HHHHHHHHHHHHcCCCEEEeecchhhccCCcccHHHHHHHHHHHHHHHHhCCCCCEE--EEEEECCCCcccccccCcHHH
Confidence 46778889999999999999996 775543223345667777888888875555544 67999998643322222223
Q ss_pred hhhh-hhcCCCeEeeCCCCCc--ccccee-cccCcccc---cCCCCc-hHHHHHHHHHHHHHH
Q 015723 210 VMEI-GQNNPEIYFTDREGRR--NSECLT-WGIDKERV---LRGRTA-VEVYFDYMRSFRVEF 264 (402)
Q Consensus 210 V~~~-g~~~PDI~~tDr~G~r--n~E~LS-l~~D~~pv---l~GRtp-~~~Y~dfm~sF~~~f 264 (402)
+.+. -+...|.+..|-...| +-|.|. +..|+.-+ ...|++ ++.-.+-.+.+++..
T Consensus 233 i~~~l~~~~vd~~~le~~~~~~~~~~~l~~~~~~k~l~~GvVd~~~~~~e~~e~v~~ri~~~~ 295 (332)
T cd03311 233 IAEYIFELDVDVFFLEYDNSRAGGLEPLKELPYDKKVGLGVVDVKSPEVESPEEVKDRIEEAA 295 (332)
T ss_pred HHHHHHhCCCCEEEEEEcCCCCcchHHHHhCCCCCEEEeeeecCCCCCCCCHHHHHHHHHHHH
Confidence 1221 2445788887776543 233333 21243332 355766 455555555554443
No 39
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=91.64 E-value=0.33 Score=46.27 Aligned_cols=73 Identities=15% Similarity=0.309 Sum_probs=48.5
Q ss_pred CCCccEEEeecc---ceeeCCCcccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCe
Q 015723 108 TPYVPVYVMLPL---GIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELK 184 (402)
Q Consensus 108 ~~~vpvyVMlPL---d~V~~~~~~~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLK 184 (402)
...+|++||+=- |-+-++ ..-+.+.+|++.+|++|++|+.+++ +- .+++.|-...++|++.++ |+.
T Consensus 48 ~~~ipv~vMIRpr~gdF~Ys~---~E~~~M~~dI~~~~~~GadG~VfG~----L~--~dg~iD~~~~~~Li~~a~--~~~ 116 (201)
T PF03932_consen 48 AVDIPVHVMIRPRGGDFVYSD---EEIEIMKEDIRMLRELGADGFVFGA----LT--EDGEIDEEALEELIEAAG--GMP 116 (201)
T ss_dssp HTTSEEEEE--SSSS-S---H---HHHHHHHHHHHHHHHTT-SEEEE------BE--TTSSB-HHHHHHHHHHHT--TSE
T ss_pred hcCCceEEEECCCCCCccCCH---HHHHHHHHHHHHHHHcCCCeeEEEe----EC--CCCCcCHHHHHHHHHhcC--CCe
Confidence 346899999743 122111 2446899999999999999999865 33 488999999999999987 888
Q ss_pred EEEEEee
Q 015723 185 LQVVMSF 191 (402)
Q Consensus 185 v~vvmsF 191 (402)
+..=++|
T Consensus 117 ~tFHRAf 123 (201)
T PF03932_consen 117 VTFHRAF 123 (201)
T ss_dssp EEE-GGG
T ss_pred EEEeCcH
Confidence 8433343
No 40
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=90.63 E-value=3.5 Score=40.75 Aligned_cols=83 Identities=8% Similarity=0.174 Sum_probs=58.5
Q ss_pred cChHHHHHHHHHHHHcC--cceEEEeeeeeeeecCCCceec-----chHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCC
Q 015723 129 VDPEILVNQLKILKSIN--VDGVMVDCWWGIVEAHTPQVYN-----WSGYRRLFQIVRELELKLQVVMSFHECGGNVGDD 201 (402)
Q Consensus 129 ~~~~~l~~dL~~LK~aG--VdgV~vdVWWGiVE~~~p~~Yd-----ws~Y~~l~~mvr~~GLKv~vvmsFHqCGgNVGDt 201 (402)
.+.+.+.+-++.+++.| ++.|.+|.-|-. .-+.|. |-.-+++++.+++.|+|+.+++.
T Consensus 27 ~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~~----~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~----------- 91 (303)
T cd06592 27 INQETVLNYAQEIIDNGFPNGQIEIDDNWET----CYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVH----------- 91 (303)
T ss_pred cCHHHHHHHHHHHHHcCCCCCeEEeCCCccc----cCCccccChhhCCCHHHHHHHHHHCCCeEEEEEC-----------
Confidence 57788999999999999 689999986532 123333 44578999999999999977554
Q ss_pred ccccCChhhhhhhhcCCCeEeeCCCC
Q 015723 202 VHIPLPQWVMEIGQNNPEIYFTDREG 227 (402)
Q Consensus 202 ~~IpLP~WV~~~g~~~PDI~~tDr~G 227 (402)
|.|..-.=+.+++. ..+.+.++.+|
T Consensus 92 P~i~~~s~~~~e~~-~~g~~vk~~~g 116 (303)
T cd06592 92 PFINTDSENFREAV-EKGYLVSEPSG 116 (303)
T ss_pred CeeCCCCHHHHhhh-hCCeEEECCCC
Confidence 44443332333333 45788899888
No 41
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=90.52 E-value=0.62 Score=46.41 Aligned_cols=107 Identities=21% Similarity=0.312 Sum_probs=70.4
Q ss_pred cCCCCCCccEEEeeccceeeCCCcccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCC
Q 015723 104 DFAGTPYVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELEL 183 (402)
Q Consensus 104 ~~~~~~~vpvyVMlPLd~V~~~~~~~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GL 183 (402)
+++...+|.|.+-.--..-.+...+.+. +++-|+.+++.||.||.||-+ ..++|+-=.+|+++++.+.+++|
T Consensus 80 ~Ya~~KgVgi~lw~~~~~~~~~~~~~~~--~~~~f~~~~~~Gv~GvKidF~------~~d~Q~~v~~y~~i~~~AA~~~L 151 (273)
T PF10566_consen 80 DYAKEKGVGIWLWYHSETGGNVANLEKQ--LDEAFKLYAKWGVKGVKIDFM------DRDDQEMVNWYEDILEDAAEYKL 151 (273)
T ss_dssp HHHHHTT-EEEEEEECCHTTBHHHHHCC--HHHHHHHHHHCTEEEEEEE--------SSTSHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHcCCCEEEEEeCCcchhhHhHHHH--HHHHHHHHHHcCCCEEeeCcC------CCCCHHHHHHHHHHHHHHHHcCc
Confidence 4556677887766544441111113333 599999999999999999987 45899999999999999999998
Q ss_pred eEEEEEeeeccCCCCCCCccccCChhhhhhhhcCCCeEeeCCCCCccccceecc
Q 015723 184 KLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRRNSECLTWG 237 (402)
Q Consensus 184 Kv~vvmsFHqCGgNVGDt~~IpLP~WV~~~g~~~PDI~~tDr~G~rn~E~LSl~ 237 (402)
-| -||.|- .|.=+. +.+|.++ .++|.|-.|+-.|.
T Consensus 152 mv----nfHg~~----------kPtG~~---RTyPN~m--T~EgVrG~E~~~~~ 186 (273)
T PF10566_consen 152 MV----NFHGAT----------KPTGLR---RTYPNLM--TREGVRGQEYNKWS 186 (273)
T ss_dssp EE----EETTS-------------TTHH---HCSTTEE--EE--S--GGGGGTT
T ss_pred EE----EecCCc----------CCCccc---ccCccHH--HHHHhhhhhhcccc
Confidence 77 889542 444233 6899876 58899999995554
No 42
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=89.91 E-value=1.6 Score=44.92 Aligned_cols=71 Identities=17% Similarity=0.325 Sum_probs=51.3
Q ss_pred HHHHHHHHHcCcceEEEeee-eeeeecC---CCcee--c-chHHHHHHHHHHHcCCeEEEEEeeecc-CCCCCCCccccC
Q 015723 135 VNQLKILKSINVDGVMVDCW-WGIVEAH---TPQVY--N-WSGYRRLFQIVRELELKLQVVMSFHEC-GGNVGDDVHIPL 206 (402)
Q Consensus 135 ~~dL~~LK~aGVdgV~vdVW-WGiVE~~---~p~~Y--d-ws~Y~~l~~mvr~~GLKv~vvmsFHqC-GgNVGDt~~IpL 206 (402)
++++..+|++|++.|++++- |.. +.- .|... + ....+++++-+++.||+| ++..|.- |++.+++.....
T Consensus 76 ~~~~~~ik~~G~n~VRiPi~~~~~-~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V--~iD~H~~~~~~~~~~~s~~~ 152 (407)
T COG2730 76 EEDFDQIKSAGFNAVRIPIGYWAL-QATDGDNPYLIGLTQLKILDEAINWAKKLGIYV--LIDLHGYPGGNNGHEHSGYT 152 (407)
T ss_pred hhHHHHHHHcCCcEEEcccchhhh-hccCCCCCCeecchHHHHHHHHHHHHHhcCeeE--EEEecccCCCCCCcCccccc
Confidence 89999999999999999998 554 542 23322 1 228899999999999999 5598876 445555544433
Q ss_pred Ch
Q 015723 207 PQ 208 (402)
Q Consensus 207 P~ 208 (402)
..
T Consensus 153 ~~ 154 (407)
T COG2730 153 SD 154 (407)
T ss_pred cc
Confidence 33
No 43
>PRK10150 beta-D-glucuronidase; Provisional
Probab=88.54 E-value=10 Score=40.89 Aligned_cols=45 Identities=9% Similarity=0.122 Sum_probs=36.4
Q ss_pred cChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEE
Q 015723 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQV 187 (402)
Q Consensus 129 ~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~v 187 (402)
.+.+++.+||+.||++|+|.|++- ..-+ -.+++++|-+.||-|+.
T Consensus 310 ~~~~~~~~d~~l~K~~G~N~vR~s---h~p~-----------~~~~~~~cD~~GllV~~ 354 (604)
T PRK10150 310 LDEVLNVHDHNLMKWIGANSFRTS---HYPY-----------SEEMLDLADRHGIVVID 354 (604)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEec---cCCC-----------CHHHHHHHHhcCcEEEE
Confidence 578899999999999999999993 1111 13789999999998875
No 44
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=88.32 E-value=5.9 Score=38.04 Aligned_cols=120 Identities=21% Similarity=0.256 Sum_probs=72.9
Q ss_pred CccEEEeeccceeeCCCcccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEEEE
Q 015723 110 YVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVM 189 (402)
Q Consensus 110 ~vpvyVMlPLd~V~~~~~~~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvm 189 (402)
.+|+.+|.=++.+- ...+++=++.++++|++||.++-- + .....++++.++++|++.++.+
T Consensus 76 ~~pv~lm~y~n~~~-------~~G~~~fi~~~~~aG~~giiipDl-----~-------~ee~~~~~~~~~~~g~~~i~~i 136 (242)
T cd04724 76 TIPIVLMGYYNPIL-------QYGLERFLRDAKEAGVDGLIIPDL-----P-------PEEAEEFREAAKEYGLDLIFLV 136 (242)
T ss_pred CCCEEEEEecCHHH-------HhCHHHHHHHHHHCCCcEEEECCC-----C-------HHHHHHHHHHHHHcCCcEEEEe
Confidence 46887875544332 123567789999999999999521 1 1367899999999999998877
Q ss_pred eeeccCCCCCCCccccCChhhhhhhhcCCC-eEeeCCCCCccccceecccCcccccCCCCc-hHHHHHHHHHHHHHHhhh
Q 015723 190 SFHECGGNVGDDVHIPLPQWVMEIGQNNPE-IYFTDREGRRNSECLTWGIDKERVLRGRTA-VEVYFDYMRSFRVEFNEF 267 (402)
Q Consensus 190 sFHqCGgNVGDt~~IpLP~WV~~~g~~~PD-I~~tDr~G~rn~E~LSl~~D~~pvl~GRtp-~~~Y~dfm~sF~~~fa~~ 267 (402)
+ |+- .+.-+..+.+...+ |+++...| ++++++. .+.-.++.+..|+.. +
T Consensus 137 ~-----------P~T-~~~~i~~i~~~~~~~vy~~s~~g---------------~tG~~~~~~~~~~~~i~~lr~~~-~- 187 (242)
T cd04724 137 A-----------PTT-PDERIKKIAELASGFIYYVSRTG---------------VTGARTELPDDLKELIKRIRKYT-D- 187 (242)
T ss_pred C-----------CCC-CHHHHHHHHhhCCCCEEEEeCCC---------------CCCCccCCChhHHHHHHHHHhcC-C-
Confidence 7 222 34444444442334 44444443 4666664 333445555555431 1
Q ss_pred hcCceEEEEEeeccCC
Q 015723 268 FVDGIIAEIEVGLGPC 283 (402)
Q Consensus 268 ~~~~vI~eI~VGlGP~ 283 (402)
..|.||.|=.
T Consensus 188 ------~pI~vggGI~ 197 (242)
T cd04724 188 ------LPIAVGFGIS 197 (242)
T ss_pred ------CcEEEEccCC
Confidence 3566777654
No 45
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=88.28 E-value=0.81 Score=43.92 Aligned_cols=61 Identities=10% Similarity=0.105 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHcCcceEEEeeeeeeee-----cCCCceecchHHHHHHHHHHHcCCeEEEEEeeeccCCC
Q 015723 133 ILVNQLKILKSINVDGVMVDCWWGIVE-----AHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGN 197 (402)
Q Consensus 133 ~l~~dL~~LK~aGVdgV~vdVWWGiVE-----~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsFHqCGgN 197 (402)
.+.+.++++.++|+++|.++.=|+... ++.-.+|-+..++++++.+++.|.++ ..|-||+.
T Consensus 145 ~~~~~~~~~~eaG~d~i~i~dp~~~~~~~~is~~~~~e~~~p~~k~i~~~i~~~~~~~----~lH~cg~~ 210 (306)
T cd00465 145 FILEYAKTLIEAGAKALQIHEPAFSQINSFLGPKMFKKFALPAYKKVAEYKAAGEVPI----VHHSCYDA 210 (306)
T ss_pred HHHHHHHHHHHhCCCEEEEecccccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCce----EEEECCCH
Confidence 455667788899999999998777544 22223455899999999998888776 34999973
No 46
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=87.94 E-value=1.4 Score=45.61 Aligned_cols=53 Identities=15% Similarity=0.272 Sum_probs=46.4
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEEEEee
Q 015723 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSF 191 (402)
Q Consensus 130 ~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsF 191 (402)
+.+.|++|++..|++||||..+++. ....+.+.-...+++.+++.|+||.+ ||
T Consensus 15 t~~dw~~di~~A~~~GIDgFaLNig-------~~d~~~~~~l~~a~~AA~~~gFKlf~--Sf 67 (386)
T PF03659_consen 15 TQEDWEADIRLAQAAGIDGFALNIG-------SSDSWQPDQLADAYQAAEAVGFKLFF--SF 67 (386)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecc-------cCCcccHHHHHHHHHHHHhcCCEEEE--Ee
Confidence 7789999999999999999999996 34457789999999999999999955 65
No 47
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=86.66 E-value=1.5 Score=40.43 Aligned_cols=64 Identities=16% Similarity=0.272 Sum_probs=45.1
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeee-------ee-------eeecCCCceecchHHHHHHHHHHHcCCeEEEEEee-ecc
Q 015723 130 DPEILVNQLKILKSINVDGVMVDCW-------WG-------IVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSF-HEC 194 (402)
Q Consensus 130 ~~~~l~~dL~~LK~aGVdgV~vdVW-------WG-------iVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsF-HqC 194 (402)
+.+.+.+.|..||++||++|.+.-- || .|.+ .=| ....+++|++.+++.||||++=+-+ |-+
T Consensus 2 d~~gi~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~-~~G--t~~d~~~Lv~~~h~~gi~VilD~V~NH~~ 78 (316)
T PF00128_consen 2 DFRGIIDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDP-RFG--TMEDFKELVDAAHKRGIKVILDVVPNHTS 78 (316)
T ss_dssp SHHHHHHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEEST-TTB--HHHHHHHHHHHHHHTTCEEEEEEETSEEE
T ss_pred CHHHHHHhhHHHHHcCCCceecccccccccccccccceeeecccc-ccc--hhhhhhhhhhccccccceEEEeeeccccc
Confidence 3467889999999999999988632 22 1221 111 3567899999999999999875555 544
Q ss_pred CC
Q 015723 195 GG 196 (402)
Q Consensus 195 Gg 196 (402)
..
T Consensus 79 ~~ 80 (316)
T PF00128_consen 79 DD 80 (316)
T ss_dssp TT
T ss_pred cc
Confidence 44
No 48
>PLN02229 alpha-galactosidase
Probab=86.45 E-value=1.6 Score=46.22 Aligned_cols=63 Identities=21% Similarity=0.363 Sum_probs=47.8
Q ss_pred cChHHHHHHHHHH-----HHcCcceEEEeeeeeeeecC-------CCceecchHHHHHHHHHHHcCCeEEEEEeeeccCC
Q 015723 129 VDPEILVNQLKIL-----KSINVDGVMVDCWWGIVEAH-------TPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGG 196 (402)
Q Consensus 129 ~~~~~l~~dL~~L-----K~aGVdgV~vdVWWGiVE~~-------~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsFHqCGg 196 (402)
.+++.+.+..++| |++|.+-|.||.-|...++. .+.+|- ++.+.|++.+++.|||. ..|.+-|
T Consensus 77 i~E~~i~~~ad~~v~~Gl~~~Gy~yv~iDDgW~~~~rd~~G~l~~d~~rFP-~G~k~ladyiH~~GlKf----GIy~d~G 151 (427)
T PLN02229 77 INETVIKETADALVSTGLADLGYIHVNIDDCWSNLKRDSKGQLVPDPKTFP-SGIKLLADYVHSKGLKL----GIYSDAG 151 (427)
T ss_pred cCHHHHHHHHHHHHHhHHHhCCCEEEEEcCCcCCCCcCCCCCEEEChhhcC-CcHHHHHHHHHHCCCce----EEeccCC
Confidence 4788888888874 99999999999977433332 234444 68999999999999998 5555444
No 49
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=86.23 E-value=7.9 Score=38.32 Aligned_cols=112 Identities=16% Similarity=0.223 Sum_probs=76.7
Q ss_pred CCCCccEEEeeccceeeCCCcccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEE
Q 015723 107 GTPYVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQ 186 (402)
Q Consensus 107 ~~~~vpvyVMlPLd~V~~~~~~~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~ 186 (402)
....+|+.+|.=...|- .-.+++=++.+|++||+||-|+-- | +...+++.+.++++||.++
T Consensus 84 ~~~~~pivlm~Y~N~i~-------~~G~e~F~~~~~~aGvdGlIipDL--------P----~ee~~~~~~~~~~~gl~~I 144 (259)
T PF00290_consen 84 KEPDIPIVLMTYYNPIF-------QYGIERFFKEAKEAGVDGLIIPDL--------P----PEESEELREAAKKHGLDLI 144 (259)
T ss_dssp HCTSSEEEEEE-HHHHH-------HH-HHHHHHHHHHHTEEEEEETTS--------B----GGGHHHHHHHHHHTT-EEE
T ss_pred cCCCCCEEEEeeccHHh-------ccchHHHHHHHHHcCCCEEEEcCC--------C----hHHHHHHHHHHHHcCCeEE
Confidence 34668999998877753 235677789999999999998643 2 3456788999999999999
Q ss_pred EEEeeeccCCCCCCCccccCChhhhhhhhcCCCeE-eeCCCCCccccceecccCcccccCCCCch-HHHHHHHHHHHHHH
Q 015723 187 VVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIY-FTDREGRRNSECLTWGIDKERVLRGRTAV-EVYFDYMRSFRVEF 264 (402)
Q Consensus 187 vvmsFHqCGgNVGDt~~IpLP~WV~~~g~~~PDI~-~tDr~G~rn~E~LSl~~D~~pvl~GRtp~-~~Y~dfm~sF~~~f 264 (402)
...+ ++ +.+..+..+.+.-+... +..+.|.. +.|+.+ ..+.++.+..|+..
T Consensus 145 ~lv~-----------p~-t~~~Ri~~i~~~a~gFiY~vs~~GvT---------------G~~~~~~~~l~~~i~~ik~~~ 197 (259)
T PF00290_consen 145 PLVA-----------PT-TPEERIKKIAKQASGFIYLVSRMGVT---------------GSRTELPDELKEFIKRIKKHT 197 (259)
T ss_dssp EEEE-----------TT-S-HHHHHHHHHH-SSEEEEESSSSSS---------------STTSSCHHHHHHHHHHHHHTT
T ss_pred EEEC-----------CC-CCHHHHHHHHHhCCcEEEeeccCCCC---------------CCcccchHHHHHHHHHHHhhc
Confidence 8777 33 36778888777666644 45777763 445554 44667777766655
No 50
>PLN02361 alpha-amylase
Probab=85.77 E-value=2.8 Score=43.72 Aligned_cols=69 Identities=9% Similarity=-0.012 Sum_probs=49.1
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecc----------hHHHHHHHHHHHcCCeEEEEEee-eccCCCC
Q 015723 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNW----------SGYRRLFQIVRELELKLQVVMSF-HECGGNV 198 (402)
Q Consensus 130 ~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydw----------s~Y~~l~~mvr~~GLKv~vvmsF-HqCGgNV 198 (402)
-++.+.+.|..||++||++|-+.--.--....+=..+|+ +.++++++.++++||||++=+-+ |-||..-
T Consensus 27 ~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~V~NH~~g~~~ 106 (401)
T PLN02361 27 WWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADIVINHRVGTTQ 106 (401)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEEccccccCCCC
Confidence 468999999999999999998876432111111122232 46999999999999999875554 7776543
No 51
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=85.63 E-value=2.8 Score=40.66 Aligned_cols=50 Identities=12% Similarity=0.300 Sum_probs=34.6
Q ss_pred ccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEEEEee
Q 015723 128 LVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSF 191 (402)
Q Consensus 128 ~~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsF 191 (402)
..+.+.+++||+.||++|+|.|++-. ..+. .++.++|.+.||-|+.=+..
T Consensus 32 a~~~~~~~~d~~l~k~~G~N~iR~~h---~p~~-----------~~~~~~cD~~GilV~~e~~~ 81 (298)
T PF02836_consen 32 AMPDEAMERDLELMKEMGFNAIRTHH---YPPS-----------PRFYDLCDELGILVWQEIPL 81 (298)
T ss_dssp ---HHHHHHHHHHHHHTT-SEEEETT---S--S-----------HHHHHHHHHHT-EEEEE-S-
T ss_pred cCCHHHHHHHHHHHHhcCcceEEccc---ccCc-----------HHHHHHHhhcCCEEEEeccc
Confidence 45789999999999999999999832 2221 57889999999999775544
No 52
>smart00642 Aamy Alpha-amylase domain.
Probab=85.62 E-value=3.9 Score=37.26 Aligned_cols=68 Identities=12% Similarity=0.222 Sum_probs=47.9
Q ss_pred cChHHHHHHHHHHHHcCcceEEEeeeeeeeec-CCCcee-------------cchHHHHHHHHHHHcCCeEEEEEeeecc
Q 015723 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEA-HTPQVY-------------NWSGYRRLFQIVRELELKLQVVMSFHEC 194 (402)
Q Consensus 129 ~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~-~~p~~Y-------------dws~Y~~l~~mvr~~GLKv~vvmsFHqC 194 (402)
-+.+.+.+.|..||++||++|-+.-.+-..+. ....-| +.+.++++++.++++||+|++=+-+--|
T Consensus 16 G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH~ 95 (166)
T smart00642 16 GDLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINHT 95 (166)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCC
Confidence 46789999999999999999977654332220 001111 3467899999999999999876666444
Q ss_pred CC
Q 015723 195 GG 196 (402)
Q Consensus 195 Gg 196 (402)
+.
T Consensus 96 ~~ 97 (166)
T smart00642 96 SD 97 (166)
T ss_pred CC
Confidence 43
No 53
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=85.36 E-value=1.4 Score=43.45 Aligned_cols=58 Identities=17% Similarity=0.283 Sum_probs=42.3
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeecCCCc---eecchHHHHHHHHHHHcCCeEEEEEeeeccCC
Q 015723 135 VNQLKILKSINVDGVMVDCWWGIVEAHTPQ---VYNWSGYRRLFQIVRELELKLQVVMSFHECGG 196 (402)
Q Consensus 135 ~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~---~Ydws~Y~~l~~mvr~~GLKv~vvmsFHqCGg 196 (402)
.+.++++.++|+++|.+..-|+.-.--+|. +|-+.+++++++-+++.|... ..|-||.
T Consensus 183 ~~~~~~~~~~Gad~I~i~dp~a~~~~lsp~~f~e~~~p~~k~i~~~i~~~g~~~----ilH~CG~ 243 (340)
T TIGR01463 183 IAYAKAMVEAGADVIAIADPFASSDLISPETYKEFGLPYQKRLFAYIKEIGGIT----VLHICGF 243 (340)
T ss_pred HHHHHHHHHcCCCEEEecCCccCccccCHHHHHHHHHHHHHHHHHHHHhcCCce----EEEECCC
Confidence 455567789999999998878732122344 455999999999999988543 4688975
No 54
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=85.32 E-value=5.6 Score=41.48 Aligned_cols=79 Identities=18% Similarity=0.369 Sum_probs=51.1
Q ss_pred cChHHHHHHHHHHHHcCcceEEEeeee-----------eeeecCCCceecchHHHHHHHHHHHcCCeEEEEEeeeccCCC
Q 015723 129 VDPEILVNQLKILKSINVDGVMVDCWW-----------GIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGN 197 (402)
Q Consensus 129 ~~~~~l~~dL~~LK~aGVdgV~vdVWW-----------GiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsFHqCGgN 197 (402)
.+++.+.+.++++|++|++.+.||.=| |.-++ .+.+|= ++.+.|++.|++.|+|.=+=+..=.+ |
T Consensus 55 ~~e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~-~~~kFP-~Gl~~l~~~i~~~Gmk~GlW~ePe~v--~ 130 (394)
T PF02065_consen 55 ITEEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEP-DPKKFP-NGLKPLADYIHSLGMKFGLWFEPEMV--S 130 (394)
T ss_dssp --HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECB-BTTTST-THHHHHHHHHHHTT-EEEEEEETTEE--E
T ss_pred CCHHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeE-ChhhhC-CcHHHHHHHHHHCCCeEEEEeccccc--c
Confidence 478999999999999999999999877 44444 344443 58999999999999999664432111 1
Q ss_pred CCCCccccCChhhh
Q 015723 198 VGDDVHIPLPQWVM 211 (402)
Q Consensus 198 VGDt~~IpLP~WV~ 211 (402)
.+-...-..|.|+.
T Consensus 131 ~~S~l~~~hPdw~l 144 (394)
T PF02065_consen 131 PDSDLYREHPDWVL 144 (394)
T ss_dssp SSSCHCCSSBGGBT
T ss_pred chhHHHHhCcccee
Confidence 11122234677776
No 55
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=84.78 E-value=5.9 Score=38.83 Aligned_cols=88 Identities=13% Similarity=0.256 Sum_probs=58.8
Q ss_pred ccChHHHHHHHHHHHHcC--cceEEEeeeeeeeecCCCceecch-----HHHHHHHHHHHcCCeEEEEEeeeccCCCCCC
Q 015723 128 LVDPEILVNQLKILKSIN--VDGVMVDCWWGIVEAHTPQVYNWS-----GYRRLFQIVRELELKLQVVMSFHECGGNVGD 200 (402)
Q Consensus 128 ~~~~~~l~~dL~~LK~aG--VdgV~vdVWWGiVE~~~p~~Ydws-----~Y~~l~~mvr~~GLKv~vvmsFHqCGgNVGD 200 (402)
..+.+.+.+-++.+|++| +|.+.+|.=|. ....-+.|+|. -.+++++.+++.|+|+.+ ..|-. |+.
T Consensus 20 y~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~--~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~--~~~P~---i~~ 92 (308)
T cd06593 20 YYDEEEVNEFADGMRERNLPCDVIHLDCFWM--KEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCL--WINPY---IAQ 92 (308)
T ss_pred CCCHHHHHHHHHHHHHcCCCeeEEEEecccc--cCCcceeeEECcccCCCHHHHHHHHHHCCCeEEE--EecCC---CCC
Confidence 357889999999999999 88899997443 21111245554 689999999999999866 54422 111
Q ss_pred CccccCChhhhhhhhcCCCeEeeCCCCCc
Q 015723 201 DVHIPLPQWVMEIGQNNPEIYFTDREGRR 229 (402)
Q Consensus 201 t~~IpLP~WV~~~g~~~PDI~~tDr~G~r 229 (402)
+ -| +.++++ .++.|.++.+|..
T Consensus 93 ~----~~--~~~e~~-~~g~~v~~~~g~~ 114 (308)
T cd06593 93 K----SP--LFKEAA-EKGYLVKKPDGSV 114 (308)
T ss_pred C----ch--hHHHHH-HCCeEEECCCCCe
Confidence 1 12 233333 5688888887763
No 56
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=84.55 E-value=2.6 Score=41.62 Aligned_cols=74 Identities=22% Similarity=0.478 Sum_probs=56.0
Q ss_pred CCccEEEeeccceeeCCCccc----ChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCe
Q 015723 109 PYVPVYVMLPLGIIDMNCELV----DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELK 184 (402)
Q Consensus 109 ~~vpvyVMlPLd~V~~~~~~~----~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLK 184 (402)
..+|||+|.== ..+.+. .-+.+++|+++.|++|++||.+++- ..+|+-|=.-..+|++.+. ||.
T Consensus 50 ~~ipv~~MIRP----RgGdFvY~~~E~~iM~~DI~~~~~lG~~GVV~G~l------t~dg~iD~~~le~Li~aA~--gL~ 117 (241)
T COG3142 50 SKIPVYVMIRP----RGGDFVYSDDELEIMLEDIRLARELGVQGVVLGAL------TADGNIDMPRLEKLIEAAG--GLG 117 (241)
T ss_pred cCCceEEEEec----CCCCcccChHHHHHHHHHHHHHHHcCCCcEEEeee------cCCCccCHHHHHHHHHHcc--CCc
Confidence 45899999632 223332 4468999999999999999999764 4699999999999999887 666
Q ss_pred EEEEEeeecc
Q 015723 185 LQVVMSFHEC 194 (402)
Q Consensus 185 v~vvmsFHqC 194 (402)
|-.=++|-.|
T Consensus 118 vTFHrAFD~~ 127 (241)
T COG3142 118 VTFHRAFDEC 127 (241)
T ss_pred eeeehhhhhc
Confidence 6445577444
No 57
>PRK01060 endonuclease IV; Provisional
Probab=84.46 E-value=1.8 Score=40.99 Aligned_cols=64 Identities=8% Similarity=-0.068 Sum_probs=42.6
Q ss_pred eeccceeeCCCcccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEE
Q 015723 116 MLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQ 186 (402)
Q Consensus 116 MlPLd~V~~~~~~~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~ 186 (402)
|+++++.++ ..+.+++-|+.++++|+++|++.+.-..- ..+..++=...+++-+++++.||++.
T Consensus 1 ~~~~g~~~~-----~~~~~~~~l~~~~~~G~d~vEl~~~~p~~--~~~~~~~~~~~~~lk~~~~~~gl~~~ 64 (281)
T PRK01060 1 MKLIGAHVS-----AAGGLEGAVAEAAEIGANAFMIFTGNPQQ--WKRKPLEELNIEAFKAACEKYGISPE 64 (281)
T ss_pred CCeEEEeee-----cCCCHHHHHHHHHHcCCCEEEEECCCCCC--CcCCCCCHHHHHHHHHHHHHcCCCCC
Confidence 667777652 22339999999999999999995431100 01122333357778889999999963
No 58
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=84.07 E-value=12 Score=36.37 Aligned_cols=122 Identities=16% Similarity=0.229 Sum_probs=69.3
Q ss_pred CCccc-ChHHHHHHHHHHHHcC-cceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCc
Q 015723 125 NCELV-DPEILVNQLKILKSIN-VDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDV 202 (402)
Q Consensus 125 ~~~~~-~~~~l~~dL~~LK~aG-VdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsFHqCGgNVGDt~ 202 (402)
+|+.. +.+...+-|+.+-.+| ++.|.|+..+. =...+++.+.+++.|.|+++ |+|.=.
T Consensus 87 GG~~~~~~~~~~~ll~~~~~~~~~d~vDiEl~~~-----------~~~~~~l~~~~~~~~~kvI~--S~H~f~------- 146 (253)
T PRK02412 87 GGEIALSDEEYLALIKAVIKSGLPDYIDVELFSG-----------KDVVKEMVAFAHEHGVKVVL--SYHDFE------- 146 (253)
T ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCEEEEeccCC-----------hHHHHHHHHHHHHcCCEEEE--eeCCCC-------
Confidence 44433 3333444466666778 99999876442 13477888999999999855 999432
Q ss_pred cccCChhhhhhhhcCCCeEeeCCCCCccccceecccCcccc-cCCCCchHHHHHHHHHHHHHHhhhhcCceEEEEEeecc
Q 015723 203 HIPLPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERV-LRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLG 281 (402)
Q Consensus 203 ~IpLP~WV~~~g~~~PDI~~tDr~G~rn~E~LSl~~D~~pv-l~GRtp~~~Y~dfm~sF~~~fa~~~~~~vI~eI~VGlG 281 (402)
-+++.|-+. + .-.+..++++|-+.+ ...+++.++.+-+ .|..++..... .+-=|.++||
T Consensus 147 -~tP~~~~l~--~-------------~~~~~~~~gaDivKia~~a~~~~D~~~ll--~~~~~~~~~~~--~~P~i~~~MG 206 (253)
T PRK02412 147 -KTPPKEEIV--E-------------RLRKMESLGADIVKIAVMPQSEQDVLTLL--NATREMKELYA--DQPLITMSMG 206 (253)
T ss_pred -CCcCHHHHH--H-------------HHHHHHHhCCCEEEEEecCCCHHHHHHHH--HHHHHHHhcCC--CCCEEEEeCC
Confidence 234444321 1 112344566776555 3445555544422 34444433111 1344689999
Q ss_pred CCCcc
Q 015723 282 PCGEL 286 (402)
Q Consensus 282 P~GEL 286 (402)
+.|-+
T Consensus 207 ~~G~~ 211 (253)
T PRK02412 207 KLGRI 211 (253)
T ss_pred CCchH
Confidence 98864
No 59
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.63 E-value=12 Score=39.74 Aligned_cols=126 Identities=15% Similarity=0.188 Sum_probs=81.7
Q ss_pred cccChHHHHHHHHHHHHcCcceEEEeee-eee------eecCCCc-------eecchHHHHHHHHHHHcCCeEEEEEeee
Q 015723 127 ELVDPEILVNQLKILKSINVDGVMVDCW-WGI------VEAHTPQ-------VYNWSGYRRLFQIVRELELKLQVVMSFH 192 (402)
Q Consensus 127 ~~~~~~~l~~dL~~LK~aGVdgV~vdVW-WGi------VE~~~p~-------~Ydws~Y~~l~~mvr~~GLKv~vvmsFH 192 (402)
.+..+..+..-|..|.++|+|.|-.-|| +|. +.|...+ .=.|.-+..+++.+++.||+|++=+-|-
T Consensus 59 v~~~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~~ 138 (418)
T COG1649 59 VLFQRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGLPGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNPY 138 (418)
T ss_pred ccccHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCcCcccCCCCCCChHHHHHHHHHhcCCeeeechhhc
Confidence 4568999999999999999999999999 883 3332222 2246677788888999999999933321
Q ss_pred ccCCCCCCCccccCChhhhhhhhcCCCeEeeCCCCCccccceecccCcccccCCCCchHHHHHHHHHHHHHHhhhh
Q 015723 193 ECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFF 268 (402)
Q Consensus 193 qCGgNVGDt~~IpLP~WV~~~g~~~PDI~~tDr~G~rn~E~LSl~~D~~pvl~GRtp~~~Y~dfm~sF~~~fa~~~ 268 (402)
. -+|-=-.-+.--|.|.. .+.|+..+....|... -++ |++= ++.=++|+.+...+...-|
T Consensus 139 ~-~a~~~s~~~~~~p~~~~---~~~~~~~~~~~~~~~~----~~~------ldPg--~Pevq~~i~~lv~evV~~Y 198 (418)
T COG1649 139 R-MAPPTSPLTKRHPHWLT---TKRPGWVYVRHQGWGK----RVW------LDPG--IPEVQDFITSLVVEVVRNY 198 (418)
T ss_pred c-cCCCCChhHhhCCCCcc---cCCCCeEEEecCCcee----eeE------eCCC--ChHHHHHHHHHHHHHHhCC
Confidence 0 01100011233466776 5556666666666421 122 2211 6777899999999888844
No 60
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=83.56 E-value=5.5 Score=39.10 Aligned_cols=89 Identities=16% Similarity=0.188 Sum_probs=65.2
Q ss_pred CCccEEEeeccceeeCCCcccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEEE
Q 015723 109 PYVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVV 188 (402)
Q Consensus 109 ~~vpvyVMlPLd~V~~~~~~~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vv 188 (402)
..+|+.+|.=...|- .-.+++=++.+|++||+||-|+- = -+...+++++.++++||++++.
T Consensus 88 ~~~p~vlm~Y~N~i~-------~~G~e~f~~~~~~aGvdGviipD--------L----p~ee~~~~~~~~~~~gl~~I~l 148 (258)
T PRK13111 88 PTIPIVLMTYYNPIF-------QYGVERFAADAAEAGVDGLIIPD--------L----PPEEAEELRAAAKKHGLDLIFL 148 (258)
T ss_pred CCCCEEEEecccHHh-------hcCHHHHHHHHHHcCCcEEEECC--------C----CHHHHHHHHHHHHHcCCcEEEE
Confidence 346888887666543 22566779999999999999962 1 2367889999999999999876
Q ss_pred EeeeccCCCCCCCccccCChhhhhhhhcCCC-eEeeCCCCC
Q 015723 189 MSFHECGGNVGDDVHIPLPQWVMEIGQNNPE-IYFTDREGR 228 (402)
Q Consensus 189 msFHqCGgNVGDt~~IpLP~WV~~~g~~~PD-I~~tDr~G~ 228 (402)
++ ++. .+..+..+.+..++ |+++.+.|.
T Consensus 149 va-----------p~t-~~eri~~i~~~s~gfIY~vs~~Gv 177 (258)
T PRK13111 149 VA-----------PTT-TDERLKKIASHASGFVYYVSRAGV 177 (258)
T ss_pred eC-----------CCC-CHHHHHHHHHhCCCcEEEEeCCCC
Confidence 65 444 46788877777777 555577664
No 61
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=82.72 E-value=3 Score=40.04 Aligned_cols=53 Identities=13% Similarity=-0.035 Sum_probs=38.9
Q ss_pred HHHHHHHHHcCcceEEEeeeeee---eecCCCceecchHHHHHHHHHHHcCCeEEEEE
Q 015723 135 VNQLKILKSINVDGVMVDCWWGI---VEAHTPQVYNWSGYRRLFQIVRELELKLQVVM 189 (402)
Q Consensus 135 ~~dL~~LK~aGVdgV~vdVWWGi---VE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvm 189 (402)
++.|+.||++|++.|.++.= +. .+.-. +..+|..+.+.++.++++|+++.+-+
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E-~~~~~~~~i~-~~~s~~~~~~ai~~l~~~Gi~v~~~~ 178 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLD-TSQEFYSNII-STHTYDDRVDTLENAKKAGLKVCSGG 178 (296)
T ss_pred HHHHHHHHHcCCCEEEEccc-CCHHHHhhcc-CCCCHHHHHHHHHHHHHcCCEEEEeE
Confidence 57788999999999988732 21 11111 24688999999999999999985533
No 62
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=82.39 E-value=8.4 Score=36.09 Aligned_cols=43 Identities=14% Similarity=0.220 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEE
Q 015723 133 ILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQV 187 (402)
Q Consensus 133 ~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~v 187 (402)
-+++.|++++++|+++|++.. + ++. ...++.++++++||++..
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~------~-----~~~-~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLF------P-----YDW-DAEALKARLAAAGLEQVL 57 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecC------C-----ccC-CHHHHHHHHHHcCCeEEE
Confidence 588999999999999999842 1 122 367888899999999854
No 63
>PHA00442 host recBCD nuclease inhibitor
Probab=81.95 E-value=2.5 Score=33.39 Aligned_cols=27 Identities=41% Similarity=0.710 Sum_probs=22.0
Q ss_pred HHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHc
Q 015723 136 NQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVREL 181 (402)
Q Consensus 136 ~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~ 181 (402)
.-|.+|++.||| ||++|.+..+|+.+.
T Consensus 30 ~~L~~Lea~GVD-------------------NW~Gy~eA~emv~~e 56 (59)
T PHA00442 30 EFLKALRACGVD-------------------NWDGYMDAVEMVAEE 56 (59)
T ss_pred HHHHHHHHcCCc-------------------chhhHHHHHHHHhhh
Confidence 457778888886 899999999998753
No 64
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=81.31 E-value=3.6 Score=42.51 Aligned_cols=57 Identities=19% Similarity=0.285 Sum_probs=42.2
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeec----CCCceecchHHHHHHHHHHHcCCeEEEEEeeec
Q 015723 135 VNQLKILKSINVDGVMVDCWWGIVEA----HTPQVYNWSGYRRLFQIVRELELKLQVVMSFHE 193 (402)
Q Consensus 135 ~~dL~~LK~aGVdgV~vdVWWGiVE~----~~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsFHq 193 (402)
+.-|..||++||+-|++-+|=-=-.. -+.|.=|-..--++.+.+++.|+|| .+-||-
T Consensus 66 qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKV--l~dFHY 126 (403)
T COG3867 66 QDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKV--LLDFHY 126 (403)
T ss_pred HHHHHHHHHcCcCeEEEEEecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEE--Eeeccc
Confidence 44578899999999999999322211 1245557777778888889999999 559994
No 65
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=81.03 E-value=15 Score=36.22 Aligned_cols=90 Identities=12% Similarity=0.226 Sum_probs=66.2
Q ss_pred CCccEEEeeccceeeCCCcccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEEE
Q 015723 109 PYVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVV 188 (402)
Q Consensus 109 ~~vpvyVMlPLd~V~~~~~~~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vv 188 (402)
..+|+.+|.=+..|- .-.+++=++.+|++||+||-++.- | +....++++.++++||+.+..
T Consensus 90 ~~~p~vlm~Y~N~i~-------~~G~e~F~~~~~~aGvdgviipDL-----P-------~ee~~~~~~~~~~~gi~~I~l 150 (263)
T CHL00200 90 IKAPIVIFTYYNPVL-------HYGINKFIKKISQAGVKGLIIPDL-----P-------YEESDYLISVCNLYNIELILL 150 (263)
T ss_pred CCCCEEEEecccHHH-------HhCHHHHHHHHHHcCCeEEEecCC-----C-------HHHHHHHHHHHHHcCCCEEEE
Confidence 446877887766543 236777899999999999999753 2 245789999999999999987
Q ss_pred EeeeccCCCCCCCccccCChhhhhhhhcCCC-eEeeCCCCCc
Q 015723 189 MSFHECGGNVGDDVHIPLPQWVMEIGQNNPE-IYFTDREGRR 229 (402)
Q Consensus 189 msFHqCGgNVGDt~~IpLP~WV~~~g~~~PD-I~~tDr~G~r 229 (402)
++ |+ +.+..+..+.+.-.. |+++.+.|..
T Consensus 151 v~-----------Pt-T~~eri~~i~~~a~gFIY~vS~~GvT 180 (263)
T CHL00200 151 IA-----------PT-SSKSRIQKIARAAPGCIYLVSTTGVT 180 (263)
T ss_pred EC-----------CC-CCHHHHHHHHHhCCCcEEEEcCCCCC
Confidence 77 44 356788777665554 5555777764
No 66
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=80.23 E-value=3.9 Score=44.46 Aligned_cols=56 Identities=11% Similarity=0.118 Sum_probs=41.6
Q ss_pred ChHHHHHHH-HHHHHcCcceEEE-eeeeeeeecCCCceecc-----------------hHHHHHHHHHHHcCCeEEEEEe
Q 015723 130 DPEILVNQL-KILKSINVDGVMV-DCWWGIVEAHTPQVYNW-----------------SGYRRLFQIVRELELKLQVVMS 190 (402)
Q Consensus 130 ~~~~l~~dL-~~LK~aGVdgV~v-dVWWGiVE~~~p~~Ydw-----------------s~Y~~l~~mvr~~GLKv~vvms 190 (402)
+-+.+.+.| ..||++||+.|.+ +++.. |...+| ..++++++.++++||+|++=+-
T Consensus 154 ~~~~i~~~l~dyl~~LGvt~i~L~Pi~e~------~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V 227 (613)
T TIGR01515 154 SYRELADQLIPYVKELGFTHIELLPVAEH------PFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDWV 227 (613)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCcccC------CCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 357777886 9999999999999 66432 111122 2589999999999999977555
Q ss_pred e
Q 015723 191 F 191 (402)
Q Consensus 191 F 191 (402)
+
T Consensus 228 ~ 228 (613)
T TIGR01515 228 P 228 (613)
T ss_pred c
Confidence 5
No 67
>PLN02591 tryptophan synthase
Probab=80.23 E-value=21 Score=35.12 Aligned_cols=89 Identities=11% Similarity=0.107 Sum_probs=64.2
Q ss_pred CCccEEEeeccceeeCCCcccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEEE
Q 015723 109 PYVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVV 188 (402)
Q Consensus 109 ~~vpvyVMlPLd~V~~~~~~~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vv 188 (402)
..+|+.+|.=...|- .-.+++=++.+|++||+||-++-- -++.-.++.+.++++||..++.
T Consensus 77 ~~~p~ilm~Y~N~i~-------~~G~~~F~~~~~~aGv~GviipDL------------P~ee~~~~~~~~~~~gl~~I~l 137 (250)
T PLN02591 77 LSCPIVLFTYYNPIL-------KRGIDKFMATIKEAGVHGLVVPDL------------PLEETEALRAEAAKNGIELVLL 137 (250)
T ss_pred CCCCEEEEecccHHH-------HhHHHHHHHHHHHcCCCEEEeCCC------------CHHHHHHHHHHHHHcCCeEEEE
Confidence 346887887776653 236777899999999999999831 2467788999999999999886
Q ss_pred EeeeccCCCCCCCccccCChhhhhhhhcCCCeEe-eCCCCC
Q 015723 189 MSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYF-TDREGR 228 (402)
Q Consensus 189 msFHqCGgNVGDt~~IpLP~WV~~~g~~~PDI~~-tDr~G~ 228 (402)
.+ ++. .+..+..+.+.-++..| ..+.|.
T Consensus 138 v~-----------Ptt-~~~ri~~ia~~~~gFIY~Vs~~Gv 166 (250)
T PLN02591 138 TT-----------PTT-PTERMKAIAEASEGFVYLVSSTGV 166 (250)
T ss_pred eC-----------CCC-CHHHHHHHHHhCCCcEEEeeCCCC
Confidence 65 443 46688777776666443 355544
No 68
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=79.54 E-value=33 Score=39.67 Aligned_cols=138 Identities=17% Similarity=0.238 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCccccCChhhhhhhhcCCCeEe-eCCCCCccccceecccCcccccCCCC
Q 015723 170 GYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYF-TDREGRRNSECLTWGIDKERVLRGRT 248 (402)
Q Consensus 170 ~Y~~l~~mvr~~GLKv~vvmsFHqCGgNVGDt~~IpLP~WV~~~g~~~PDI~~-tDr~G~rn~E~LSl~~D~~pvl~GRt 248 (402)
.++++++-++++||+|++=+-|--++-. |. -...+.+ +-.|.-++ .+..|.... +-+|+++ .+
T Consensus 405 Efk~mV~alH~~Gi~VIlDVVyNHt~~~-g~-----~~~s~ld--~~~P~YY~r~~~~G~~~n---~~~~~d~-----a~ 468 (898)
T TIGR02103 405 EFREMVQALNKTGLNVVMDVVYNHTNAS-GP-----NDRSVLD--KIVPGYYHRLNEDGGVEN---STCCSNT-----AT 468 (898)
T ss_pred HHHHHHHHHHHCCCEEEEEeeccccccc-Cc-----cCccccc--ccCcHhhEeeCCCCCeec---CCCCcCC-----CC
Confidence 4889999999999999775555333321 10 0111111 22343333 233343211 1223331 12
Q ss_pred chHHHHHHHHHHHHHHhhhhcCceEEEEEeeccCCCccCCCCCCCCCCCccCCCcccccccHHHHHHHHHHHHHhC----
Q 015723 249 AVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRYPTYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARG---- 324 (402)
Q Consensus 249 p~~~Y~dfm~sF~~~fa~~~~~~vI~eI~VGlGP~GELRYPSyp~~~gW~~pGiGEFQCYDk~~~~~fr~~a~~kg---- 324 (402)
-.++-++|+..-.....+-+ .++|++|==.| -.++-....+++.+++..
T Consensus 469 e~~~Vrk~iiDsl~~W~~ey------------------------~VDGFRfDlm~---~~~~~f~~~~~~~l~~i~pdi~ 521 (898)
T TIGR02103 469 EHRMMAKLIVDSLVVWAKDY------------------------KVDGFRFDLMG---HHPKAQMLAAREAIKALTPEIY 521 (898)
T ss_pred CCHHHHHHHHHHHHHHHHHc------------------------CCCEEEEechh---hCCHHHHHHHHHHHHHhCCCEE
Confidence 24555666555444444322 24788884333 367777888888888874
Q ss_pred --CcccCCC-C------CCCCCCCCCCCCCCcccc
Q 015723 325 --HLFWARG-P------GNAGSYNSTPHETGFFRD 350 (402)
Q Consensus 325 --n~~WG~g-P------~nag~yn~~P~~t~FF~~ 350 (402)
-..|..+ . .+|.+.|..-.+-+||.+
T Consensus 522 l~GEgW~~~~~~~~~~~~~a~~~n~~~~~ig~FnD 556 (898)
T TIGR02103 522 FYGEGWDFGEVANNRRFINATQLNLAGTGIGTFSD 556 (898)
T ss_pred EEecCCCcccccchhhhhhhhccccCCCCeEEecc
Confidence 4467532 1 235566654445578875
No 69
>PRK10658 putative alpha-glucosidase; Provisional
Probab=79.49 E-value=15 Score=40.84 Aligned_cols=86 Identities=13% Similarity=0.246 Sum_probs=58.0
Q ss_pred ChHHHHHHHHHHHHcC--cceEEEeeeeeeeecCCCceecch-----HHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCc
Q 015723 130 DPEILVNQLKILKSIN--VDGVMVDCWWGIVEAHTPQVYNWS-----GYRRLFQIVRELELKLQVVMSFHECGGNVGDDV 202 (402)
Q Consensus 130 ~~~~l~~dL~~LK~aG--VdgV~vdVWWGiVE~~~p~~Ydws-----~Y~~l~~mvr~~GLKv~vvmsFHqCGgNVGDt~ 202 (402)
+.+.+.+-++.+++.| ++++.+|+.|.. ...-+.|.|. --+++++.+++.|+|+++++- |
T Consensus 281 ~e~~v~~~~~~~r~~~iP~d~i~lD~~w~~--~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~i~-----------P 347 (665)
T PRK10658 281 DEATVNSFIDGMAERDLPLHVFHFDCFWMK--EFQWCDFEWDPRTFPDPEGMLKRLKAKGLKICVWIN-----------P 347 (665)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEEchhhhc--CCceeeeEEChhhCCCHHHHHHHHHHCCCEEEEecc-----------C
Confidence 4667788888888766 478999998842 1112345443 458899999999999977433 5
Q ss_pred cccCChhhhhhhhcCCCeEeeCCCCCc
Q 015723 203 HIPLPQWVMEIGQNNPEIYFTDREGRR 229 (402)
Q Consensus 203 ~IpLP~WV~~~g~~~PDI~~tDr~G~r 229 (402)
.|..-.-+.+++.+ -+.|.++.+|..
T Consensus 348 ~i~~~s~~f~e~~~-~gy~vk~~~G~~ 373 (665)
T PRK10658 348 YIAQKSPLFKEGKE-KGYLLKRPDGSV 373 (665)
T ss_pred CcCCCchHHHHHHH-CCeEEECCCCCE
Confidence 55443344455554 378889988874
No 70
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=79.25 E-value=9.3 Score=44.27 Aligned_cols=46 Identities=13% Similarity=0.246 Sum_probs=36.5
Q ss_pred ccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEE
Q 015723 128 LVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQV 187 (402)
Q Consensus 128 ~~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~v 187 (402)
..+.+.+++||+.||++|+|.|++- ...+. .++.++|-+.||-|+.
T Consensus 351 a~~~e~~~~dl~lmK~~g~NavR~s---HyP~~-----------~~fydlcDe~GllV~d 396 (1021)
T PRK10340 351 AVGMDRVEKDIQLMKQHNINSVRTA---HYPND-----------PRFYELCDIYGLFVMA 396 (1021)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEec---CCCCC-----------HHHHHHHHHCCCEEEE
Confidence 4578999999999999999999983 22221 2678999999998755
No 71
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=78.66 E-value=36 Score=33.68 Aligned_cols=125 Identities=10% Similarity=0.172 Sum_probs=82.2
Q ss_pred CcccChHHHHHHHHHHHHcCcceEEEeee----eee--------eec-------CCCceecchHHHHHHHHHHHcCCeEE
Q 015723 126 CELVDPEILVNQLKILKSINVDGVMVDCW----WGI--------VEA-------HTPQVYNWSGYRRLFQIVRELELKLQ 186 (402)
Q Consensus 126 ~~~~~~~~l~~dL~~LK~aGVdgV~vdVW----WGi--------VE~-------~~p~~Ydws~Y~~l~~mvr~~GLKv~ 186 (402)
..+.+.+.+++-|+.|...++|...+-.= |-+ .|. ...+.|.=+.+++|++.+++.|+.|+
T Consensus 10 R~~~~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~di~elv~yA~~rgI~vi 89 (303)
T cd02742 10 RHFLSVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYAQLKDIIEYAAARGIEVI 89 (303)
T ss_pred ccCcCHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHHHHHHHHHHHHHcCCEEE
Confidence 46778899999999999999998755433 422 111 13567999999999999999999998
Q ss_pred EEEeeeccCCCCCCCccccCChhhhhhhhcCCCeEeeCCCC------------------------------Cccccceec
Q 015723 187 VVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREG------------------------------RRNSECLTW 236 (402)
Q Consensus 187 vvmsFHqCGgNVGDt~~IpLP~WV~~~g~~~PDI~~tDr~G------------------------------~rn~E~LSl 236 (402)
|-+- .|.=.....+.+|++.-....+ --..+++-+
T Consensus 90 PEiD---------------~PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~l~~e~~~lf~~~~iHi 154 (303)
T cd02742 90 PEID---------------MPGHSTAFVKSFPKLLTECYAGLKLRDVFDPLDPTLPKGYDFLDDLFGEIAELFPDRYLHI 154 (303)
T ss_pred Eecc---------------chHHHHHHHHhCHHhccCccccCCCCCCCCccCCCCccHHHHHHHHHHHHHHhCCCCeEEe
Confidence 8443 3332222223333332110000 002378889
Q ss_pred ccCcccccCCCCchHHHHHHHHHHHHHHhhh
Q 015723 237 GIDKERVLRGRTAVEVYFDYMRSFRVEFNEF 267 (402)
Q Consensus 237 ~~D~~pvl~GRtp~~~Y~dfm~sF~~~fa~~ 267 (402)
|.|+.+.. .+..+.|..|++...+...+.
T Consensus 155 GgDE~~~~--~~~~~l~~~f~~~~~~~v~~~ 183 (303)
T cd02742 155 GGDEAHFK--QDRKHLMSQFIQRVLDIVKKK 183 (303)
T ss_pred cceecCCC--CCHHHHHHHHHHHHHHHHHHc
Confidence 99997543 456788888888888777764
No 72
>PLN02808 alpha-galactosidase
Probab=77.88 E-value=6.8 Score=40.97 Aligned_cols=64 Identities=17% Similarity=0.296 Sum_probs=50.3
Q ss_pred cChHHHHHHHHH-----HHHcCcceEEEeeeeeeeecCCCceec-----c-hHHHHHHHHHHHcCCeEEEEEeeeccCC
Q 015723 129 VDPEILVNQLKI-----LKSINVDGVMVDCWWGIVEAHTPQVYN-----W-SGYRRLFQIVRELELKLQVVMSFHECGG 196 (402)
Q Consensus 129 ~~~~~l~~dL~~-----LK~aGVdgV~vdVWWGiVE~~~p~~Yd-----w-s~Y~~l~~mvr~~GLKv~vvmsFHqCGg 196 (402)
.+++.+.+..++ ||++|.+-|.||.-|...++.+.|..- | ++.+.|++.+++.|||. ..|.+-|
T Consensus 46 i~e~~i~~~a~~mv~~Gl~~~Gy~yv~iDd~W~~~~rd~~G~~~~d~~rFP~G~~~lad~iH~~Glkf----Giy~~~G 120 (386)
T PLN02808 46 INETLIKQTADAMVSSGLAALGYKYINLDDCWAELKRDSQGNLVPKASTFPSGIKALADYVHSKGLKL----GIYSDAG 120 (386)
T ss_pred CCHHHHHHHHHHHHHcchHHhCCEEEEEcCCcCCCCcCCCCCEeeChhhcCccHHHHHHHHHHCCCce----EEEecCC
Confidence 578888888888 599999999999998776665555322 2 68999999999999999 5555444
No 73
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=77.45 E-value=31 Score=32.24 Aligned_cols=122 Identities=18% Similarity=0.264 Sum_probs=69.7
Q ss_pred eeeCCCccc-ChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEEEEeeeccCCCCC
Q 015723 121 IIDMNCELV-DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVG 199 (402)
Q Consensus 121 ~V~~~~~~~-~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsFHqCGgNVG 199 (402)
+...+|... +++.-.+=|+.+-.+|++.|.|+.. .+.........+++.+.|| |+|+|-..+
T Consensus 63 ~~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiE~~------------~~~~~~~~~~~~~~~~~~i--I~S~H~f~~--- 125 (224)
T PF01487_consen 63 TKEEGGRFQGSEEEYLELLERAIRLGPDYIDIELD------------LFPDDLKSRLAARKGGTKI--ILSYHDFEK--- 125 (224)
T ss_dssp BGGGTSSBSS-HHHHHHHHHHHHHHTSSEEEEEGG------------CCHHHHHHHHHHHHTTSEE--EEEEEESS----
T ss_pred ccccCCCCcCCHHHHHHHHHHHHHcCCCEEEEEcc------------cchhHHHHHHHHhhCCCeE--EEEeccCCC---
Confidence 334445443 4455556677777778998887543 1444444478889999999 559994443
Q ss_pred CCccccCChh--hhhhhhcCCCeEeeCCCCCccccceecccCcccc-cCCCCchHHHHHHHHHHHHHHhhhhcCceEEEE
Q 015723 200 DDVHIPLPQW--VMEIGQNNPEIYFTDREGRRNSECLTWGIDKERV-LRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEI 276 (402)
Q Consensus 200 Dt~~IpLP~W--V~~~g~~~PDI~~tDr~G~rn~E~LSl~~D~~pv-l~GRtp~~~Y~dfm~sF~~~fa~~~~~~vI~eI 276 (402)
-|.| +.+. -.+...+++|-+.+ ...+++.+..+ +..|..++.+.. .+-=|
T Consensus 126 ------tp~~~~l~~~----------------~~~~~~~gadivKia~~~~~~~D~~~--l~~~~~~~~~~~---~~p~i 178 (224)
T PF01487_consen 126 ------TPSWEELIEL----------------LEEMQELGADIVKIAVMANSPEDVLR--LLRFTKEFREEP---DIPVI 178 (224)
T ss_dssp --------THHHHHHH----------------HHHHHHTT-SEEEEEEE-SSHHHHHH--HHHHHHHHHHHT---SSEEE
T ss_pred ------CCCHHHHHHH----------------HHHHHhcCCCeEEEEeccCCHHHHHH--HHHHHHHHhhcc---CCcEE
Confidence 2333 2211 12233455554444 34556555555 555666666541 36778
Q ss_pred EeeccCCCcc
Q 015723 277 EVGLGPCGEL 286 (402)
Q Consensus 277 ~VGlGP~GEL 286 (402)
-++||+.|.+
T Consensus 179 ~~~MG~~G~~ 188 (224)
T PF01487_consen 179 AISMGELGRI 188 (224)
T ss_dssp EEEETGGGHH
T ss_pred EEEcCCCchh
Confidence 8999999864
No 74
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=77.43 E-value=4.8 Score=38.41 Aligned_cols=55 Identities=15% Similarity=0.190 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecc--hHHHHHHHHHHHcCCeEEEE
Q 015723 131 PEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNW--SGYRRLFQIVRELELKLQVV 188 (402)
Q Consensus 131 ~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydw--s~Y~~l~~mvr~~GLKv~vv 188 (402)
.-.|++.|+.++++|+++|++.++-. +. .+..++| ....++-++++++||+|..+
T Consensus 15 ~~~~~e~l~~~~~~G~~~VEl~~~~~--~~-~~~~~~~~~~~~~~~~~~l~~~gl~i~~~ 71 (279)
T TIGR00542 15 GECWLERLQLAKTCGFDFVEMSVDET--DD-RLSRLDWSREQRLALVNAIIETGVRIPSM 71 (279)
T ss_pred CCCHHHHHHHHHHcCCCEEEEecCCc--cc-hhhccCCCHHHHHHHHHHHHHcCCCceee
Confidence 46899999999999999999954321 11 2334444 44677888999999999653
No 75
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=77.09 E-value=14 Score=37.61 Aligned_cols=77 Identities=18% Similarity=0.220 Sum_probs=51.7
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCccccCChhhhhhh
Q 015723 135 VNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIG 214 (402)
Q Consensus 135 ~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsFHqCGgNVGDt~~IpLP~WV~~~g 214 (402)
.++|+...++||+.|+|..-.... .--.+.++.+|+.|++++..+.. ..-.-|.-+.+..
T Consensus 90 ~~dl~~a~~~gvd~iri~~~~~e~----------d~~~~~i~~ak~~G~~v~~~l~~----------s~~~~~e~l~~~a 149 (333)
T TIGR03217 90 VHDLKAAYDAGARTVRVATHCTEA----------DVSEQHIGMARELGMDTVGFLMM----------SHMTPPEKLAEQA 149 (333)
T ss_pred HHHHHHHHHCCCCEEEEEeccchH----------HHHHHHHHHHHHcCCeEEEEEEc----------ccCCCHHHHHHHH
Confidence 368999999999999988743322 24689999999999999765541 2234566665543
Q ss_pred hc----CCC-eEeeCCCCCccc
Q 015723 215 QN----NPE-IYFTDREGRRNS 231 (402)
Q Consensus 215 ~~----~PD-I~~tDr~G~rn~ 231 (402)
++ -+| |.++|-.|.-.+
T Consensus 150 ~~~~~~Ga~~i~i~DT~G~~~P 171 (333)
T TIGR03217 150 KLMESYGADCVYIVDSAGAMLP 171 (333)
T ss_pred HHHHhcCCCEEEEccCCCCCCH
Confidence 21 233 566777776444
No 76
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=76.71 E-value=6.5 Score=42.26 Aligned_cols=61 Identities=13% Similarity=0.327 Sum_probs=45.4
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecch-----------------HHHHHHHHHHHcCCeEEEEEeee
Q 015723 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWS-----------------GYRRLFQIVRELELKLQVVMSFH 192 (402)
Q Consensus 130 ~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws-----------------~Y~~l~~mvr~~GLKv~vvmsFH 192 (402)
+-..+.+.|..||++||++|.+-= +.| .++.++|. .++++++.++++||+|++=+-+-
T Consensus 109 ~~~gi~~~l~yl~~LGv~~i~L~P---i~~--~~~~~~~GY~~~~~~~~~~~~G~~~e~k~lV~~aH~~Gi~VilD~V~N 183 (542)
T TIGR02402 109 TFDAAIEKLPYLADLGITAIELMP---VAQ--FPGTRGWGYDGVLPYAPHNAYGGPDDLKALVDAAHGLGLGVILDVVYN 183 (542)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCc---ccc--CCCCCCCCCCccCccccccccCCHHHHHHHHHHHHHCCCEEEEEEccC
Confidence 447888999999999999997642 112 23445553 48999999999999998866664
Q ss_pred ccC
Q 015723 193 ECG 195 (402)
Q Consensus 193 qCG 195 (402)
-|+
T Consensus 184 H~~ 186 (542)
T TIGR02402 184 HFG 186 (542)
T ss_pred CCC
Confidence 444
No 77
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC.
Probab=76.20 E-value=4.3 Score=41.41 Aligned_cols=80 Identities=13% Similarity=0.133 Sum_probs=53.0
Q ss_pred ccEEEeeccceeeCC-----Cc----ccChHHHHH-----------HHHHHHHcCcce-EEEeee--eeeeecCCCceec
Q 015723 111 VPVYVMLPLGIIDMN-----CE----LVDPEILVN-----------QLKILKSINVDG-VMVDCW--WGIVEAHTPQVYN 167 (402)
Q Consensus 111 vpvyVMlPLd~V~~~-----~~----~~~~~~l~~-----------dL~~LK~aGVdg-V~vdVW--WGiVE~~~p~~Yd 167 (402)
+-..+..|++++... +- ..+|+.+.+ -+++..++|+++ |.+..+ |+.+= +|.+|+
T Consensus 173 i~~~~~gPf~~la~~l~g~~~~~~~l~~~Pe~v~~ll~~~td~~i~~~~~~ieaGa~~~i~i~~~~s~~~~l--sp~~f~ 250 (378)
T cd03308 173 AGGVSEAPFDIIGDYLRGFKGISIDLRRRPEKVAEACEAVTPLMIKMGTATAPAPYPGPVFTPIPLHLPPFL--RPKQFE 250 (378)
T ss_pred cceeEeCChHHHHHHHhCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEecccccCcc--CHHHHH
Confidence 445888999955411 10 124544443 345566789998 777776 54333 355565
Q ss_pred ---chHHHHHHHHHHHcCCeEEEEEeeeccCC
Q 015723 168 ---WSGYRRLFQIVRELELKLQVVMSFHECGG 196 (402)
Q Consensus 168 ---ws~Y~~l~~mvr~~GLKv~vvmsFHqCGg 196 (402)
|-+++++++-+++.|.+++ .|-||.
T Consensus 251 ef~~P~~k~i~~~i~~~g~~~i----lh~cG~ 278 (378)
T cd03308 251 KFYWPSFKKVVEGLAARGQRIF----LFFEGD 278 (378)
T ss_pred HHHHHHHHHHHHHHHhcCCCEE----EEcCCC
Confidence 9999999999999987763 388984
No 78
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=76.00 E-value=9.2 Score=33.18 Aligned_cols=57 Identities=21% Similarity=0.290 Sum_probs=41.9
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHc-CCeEEEEEeee
Q 015723 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVREL-ELKLQVVMSFH 192 (402)
Q Consensus 130 ~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~-GLKv~vvmsFH 192 (402)
+.+.+...++.||+.|+|.|.+..= ++-. .+-- ---.++++.+++++. |++| |..||
T Consensus 50 pg~~~~~~~~~l~~~~~d~IHlssC--~~~~-~~~~-~CP~~~~~~~~I~~~~gi~V--V~GTH 107 (107)
T PF08821_consen 50 PGRKLVRRIKKLKKNGADVIHLSSC--MVKG-NPHG-PCPHIDEIKKIIEEKFGIEV--VEGTH 107 (107)
T ss_pred ChhHHHHHHHHHHHCCCCEEEEcCC--EecC-CCCC-CCCCHHHHHHHHHHHhCCCE--eeecC
Confidence 3678899999999999998877642 2221 1111 334499999999999 9998 55887
No 79
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=75.75 E-value=2.8 Score=36.64 Aligned_cols=45 Identities=18% Similarity=0.113 Sum_probs=35.8
Q ss_pred HHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEE
Q 015723 138 LKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQV 187 (402)
Q Consensus 138 L~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~v 187 (402)
|+.+|++|+++|++..+...-... . -...+++.++++++||++..
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~-~----~~~~~~~~~~~~~~gl~i~~ 45 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDE-K----DDEAEELRRLLEDYGLKIAS 45 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTH-H----HHHHHHHHHHHHHTTCEEEE
T ss_pred ChHHHHcCCCEEEEecCCCccccc-c----hHHHHHHHHHHHHcCCeEEE
Confidence 688999999999999886543321 1 45788999999999999755
No 80
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=75.38 E-value=24 Score=33.38 Aligned_cols=115 Identities=17% Similarity=0.231 Sum_probs=66.0
Q ss_pred HHHHHHHHHH-HHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCccccCChhh
Q 015723 132 EILVNQLKIL-KSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWV 210 (402)
Q Consensus 132 ~~l~~dL~~L-K~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsFHqCGgNVGDt~~IpLP~WV 210 (402)
+...+-|+.+ ...|+|.|.|+..+.. ...+++++.+++.|.|+++ |+|.=.+ |+ +.+.|+
T Consensus 78 ~~~~~ll~~~~~~~~~d~vDiEl~~~~-----------~~~~~l~~~~~~~~~kvI~--S~H~f~~----tp--~~~~l~ 138 (228)
T TIGR01093 78 EEYLEELKRAADSPGPDFVDIELFLPD-----------DAVKELINIAKKGGTKIIM--SYHDFQK----TP--SWEEIV 138 (228)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEccCCH-----------HHHHHHHHHHHHCCCEEEE--eccCCCC----CC--CHHHHH
Confidence 3333335555 6789999999987631 3477888888999999954 9994322 21 122332
Q ss_pred hhhhhcCCCeEeeCCCCCccccceecccCcccc-cCCCCchHHHHHHHHHHHHHHhhhhcCceEEEEEeeccCCCccC
Q 015723 211 MEIGQNNPEIYFTDREGRRNSECLTWGIDKERV-LRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELR 287 (402)
Q Consensus 211 ~~~g~~~PDI~~tDr~G~rn~E~LSl~~D~~pv-l~GRtp~~~Y~dfm~sF~~~fa~~~~~~vI~eI~VGlGP~GELR 287 (402)
.. -.+..++++|-+.+ ...+++.++.+= .+|..++.+.. .+-=|.++||+.|-+-
T Consensus 139 ~~-----------------~~~~~~~gaDivKia~~a~~~~D~~~l--l~~~~~~~~~~---~~p~i~~~MG~~G~~S 194 (228)
T TIGR01093 139 ER-----------------LEKALSYGADIVKIAVMANSKEDVLTL--LEITNKVDEHA---DVPLITMSMGDRGKIS 194 (228)
T ss_pred HH-----------------HHHHHHhCCCEEEEEeccCCHHHHHHH--HHHHHHHHhcC---CCCEEEEeCCCCChhH
Confidence 21 11333456665554 334454443322 24555554431 2345789999998653
No 81
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=75.26 E-value=44 Score=32.02 Aligned_cols=89 Identities=17% Similarity=0.240 Sum_probs=52.7
Q ss_pred CccEEEeeccceeeCCCcccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEEEE
Q 015723 110 YVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVM 189 (402)
Q Consensus 110 ~vpvyVMlPLd~V~~~~~~~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvm 189 (402)
.+|+.+|.=+..+ ..+ .++-++.++++|+++|.+... -+|. .....++++.++++|++..+.+
T Consensus 74 ~~Pl~lM~y~n~~-----~~~---~~~~i~~~~~~Gadgvii~dl--p~e~-------~~~~~~~~~~~~~~Gl~~~~~v 136 (244)
T PRK13125 74 SVPIILMTYLEDY-----VDS---LDNFLNMARDVGADGVLFPDL--LIDY-------PDDLEKYVEIIKNKGLKPVFFT 136 (244)
T ss_pred CCCEEEEEecchh-----hhC---HHHHHHHHHHcCCCEEEECCC--CCCc-------HHHHHHHHHHHHHcCCCEEEEE
Confidence 4577666433321 123 344578889999999999421 0121 2356789999999999997755
Q ss_pred eeeccCCCCCCCccccCChhhhhhhhcCCCeEeeCCCC
Q 015723 190 SFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREG 227 (402)
Q Consensus 190 sFHqCGgNVGDt~~IpLP~WV~~~g~~~PDI~~tDr~G 227 (402)
+ |+- .+.=+..+.+.-+.++|...+|
T Consensus 137 ~-----------p~T-~~e~l~~~~~~~~~~l~msv~~ 162 (244)
T PRK13125 137 S-----------PKF-PDLLIHRLSKLSPLFIYYGLRP 162 (244)
T ss_pred C-----------CCC-CHHHHHHHHHhCCCEEEEEeCC
Confidence 4 322 2233333335566677654433
No 82
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=75.26 E-value=8 Score=36.46 Aligned_cols=51 Identities=12% Similarity=0.412 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHcCcceEEEeeeeeeeecCCCcee--cc--hHHHHHHHHHHHcCCeEEEEEe
Q 015723 133 ILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVY--NW--SGYRRLFQIVRELELKLQVVMS 190 (402)
Q Consensus 133 ~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Y--dw--s~Y~~l~~mvr~~GLKv~vvms 190 (402)
-+++.|+.++++|+++|++ |+. .+..| ++ ..-+++-+.++++||++..+..
T Consensus 14 ~l~~~l~~~~~~G~~~vEl---~~~----~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~ 68 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEI---WGG----RPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTP 68 (275)
T ss_pred CHHHHHHHHHHcCCCEEEE---ccC----CccccccccCchHHHHHHHHHHHcCCeEEEecC
Confidence 5999999999999999998 321 01111 12 2567889999999999855433
No 83
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=75.08 E-value=48 Score=32.96 Aligned_cols=62 Identities=18% Similarity=0.283 Sum_probs=50.5
Q ss_pred cccChHHHHHHHHHHHHcCcceEEE---eee--eeeeecCC-CceecchHHHHHHHHHHHcCCeEEEE
Q 015723 127 ELVDPEILVNQLKILKSINVDGVMV---DCW--WGIVEAHT-PQVYNWSGYRRLFQIVRELELKLQVV 188 (402)
Q Consensus 127 ~~~~~~~l~~dL~~LK~aGVdgV~v---dVW--WGiVE~~~-p~~Ydws~Y~~l~~mvr~~GLKv~vv 188 (402)
.+-..+.+++-++.|...|.|.+.+ |-| -+.-|-.. .+.|.=+.++++.+.+++.||.|+|-
T Consensus 12 ~~~~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~~~~~yT~~ei~ei~~yA~~~gI~vIPe 79 (301)
T cd06565 12 AVPKVSYLKKLLRLLALLGANGLLLYYEDTFPYEGEPEVGRMRGAYTKEEIREIDDYAAELGIEVIPL 79 (301)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEEEecceecCCCcccccCCCCcCHHHHHHHHHHHHHcCCEEEec
Confidence 5667899999999999999999987 434 33333322 68899999999999999999999884
No 84
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=73.55 E-value=9 Score=38.35 Aligned_cols=69 Identities=19% Similarity=0.204 Sum_probs=47.4
Q ss_pred cChHHHHHHHHHHHHcCcceEEEeeeeeeeecC----CCceecchHHHHHHHHHHHcCCeEEEEEeeeccCCCC
Q 015723 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEAH----TPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNV 198 (402)
Q Consensus 129 ~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~----~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsFHqCGgNV 198 (402)
.+-+..++-+....+.|++.|.||..|.--+.. --..+.+....+|++-+++.|.+|.+.+- |..+||+
T Consensus 29 ~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~-~~~~~~~ 101 (273)
T PF10566_consen 29 ATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYH-SETGGNV 101 (273)
T ss_dssp SSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEE-CCHTTBH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEe-CCcchhh
Confidence 366788888999999999999999999763321 12467789999999999999999966433 3345554
No 85
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=73.37 E-value=7.5 Score=36.93 Aligned_cols=66 Identities=23% Similarity=0.284 Sum_probs=45.2
Q ss_pred eccceeeCCCcccChHHHHHHHHHHHHcCcceEEEeee-eeeeecCCCceecch--HHHHHHHHHHHcCCeEEEE
Q 015723 117 LPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCW-WGIVEAHTPQVYNWS--GYRRLFQIVRELELKLQVV 188 (402)
Q Consensus 117 lPLd~V~~~~~~~~~~~l~~dL~~LK~aGVdgV~vdVW-WGiVE~~~p~~Ydws--~Y~~l~~mvr~~GLKv~vv 188 (402)
+||.+... .+...-.+++.++.+|++|.++|++.+. ... ....++|+ ..+++-++++++||++..+
T Consensus 8 ~~~~~~~~--~~~~~~~~~e~~~~~~~~G~~~iEl~~~~~~~----~~~~~~~~~~~~~~l~~~l~~~gl~i~~~ 76 (283)
T PRK13209 8 IPLGIYEK--ALPAGECWLEKLAIAKTAGFDFVEMSVDESDE----RLARLDWSREQRLALVNALVETGFRVNSM 76 (283)
T ss_pred ccceeecc--cCCCCCCHHHHHHHHHHcCCCeEEEecCcccc----chhccCCCHHHHHHHHHHHHHcCCceeEE
Confidence 45555531 2223447899999999999999999643 110 12334555 3678999999999999654
No 86
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=72.98 E-value=4.8 Score=39.67 Aligned_cols=55 Identities=15% Similarity=0.171 Sum_probs=40.8
Q ss_pred HHHHHHHHcCcceEEEeeeeeeeecCCCceec---chHHHHHHHHHHHcCCeEEEEEeeeccCC
Q 015723 136 NQLKILKSINVDGVMVDCWWGIVEAHTPQVYN---WSGYRRLFQIVRELELKLQVVMSFHECGG 196 (402)
Q Consensus 136 ~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Yd---ws~Y~~l~~mvr~~GLKv~vvmsFHqCGg 196 (402)
+-++++.++|+++|.+..-|+...--+|..|. +-+++++++.+++ ..+ ..|-||+
T Consensus 175 ~~~~~~~eaGad~i~i~d~~a~~~~isp~~f~e~~~p~~k~i~~~i~~--~~~----ilh~cG~ 232 (326)
T cd03307 175 EYAKAQLEAGADIITIADPTASPELISPEFYEEFALPYHKKIVKELHG--CPT----ILHICGN 232 (326)
T ss_pred HHHHHHHHcCCCEEEecCCCccccccCHHHHHHHHHHHHHHHHHHHhc--CCc----EEEECCC
Confidence 45566678999999998889854312466776 9999999999998 222 3588875
No 87
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=72.72 E-value=32 Score=32.30 Aligned_cols=51 Identities=18% Similarity=0.168 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEEEEeeeccCC
Q 015723 131 PEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGG 196 (402)
Q Consensus 131 ~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsFHqCGg 196 (402)
.+...+-|+.+-.+|++.|.|+..+ +-..++++.+++.|-|+ |+|+|.-.+
T Consensus 75 ~~~~~~ll~~~~~~~~d~vDiEl~~-------------~~~~~~~~~~~~~~~ki--I~S~H~f~~ 125 (225)
T cd00502 75 EEEYLELLEEALKLGPDYVDIELDS-------------ALLEELINSRKKGNTKI--IGSYHDFSG 125 (225)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEecc-------------hHHHHHHHHHHhCCCEE--EEEeccCCC
Confidence 3344444666667789999887644 35788888888899999 559995443
No 88
>PLN02692 alpha-galactosidase
Probab=71.99 E-value=11 Score=39.85 Aligned_cols=144 Identities=18% Similarity=0.277 Sum_probs=81.8
Q ss_pred cChHHHHHHHHHH-----HHcCcceEEEeeeeeeeecCCCceecc------hHHHHHHHHHHHcCCeEEEEEeeeccCCC
Q 015723 129 VDPEILVNQLKIL-----KSINVDGVMVDCWWGIVEAHTPQVYNW------SGYRRLFQIVRELELKLQVVMSFHECGGN 197 (402)
Q Consensus 129 ~~~~~l~~dL~~L-----K~aGVdgV~vdVWWGiVE~~~p~~Ydw------s~Y~~l~~mvr~~GLKv~vvmsFHqCGgN 197 (402)
++++.+.+...+| |++|.+-|.||.-|...++...|..-. ++.+.|++.+++.|||. ..|.+-|.
T Consensus 70 i~E~~i~~~ad~~~~~gl~~~Gy~yv~iDDgW~~~~rd~~G~~~~d~~kFP~G~k~ladyiH~~GLKf----GIy~d~G~ 145 (412)
T PLN02692 70 IDEKMIKETADALVSTGLSKLGYTYVNIDDCWAEIARDEKGNLVPKKSTFPSGIKALADYVHSKGLKL----GIYSDAGY 145 (412)
T ss_pred cCHHHHHHHHHHHHhccchhcCcEEEEEcCCcCCCCCCCCCCeeeChhhcCCcHHHHHHHHHHCCCce----EEEecCCc
Confidence 4777887777754 889999999999775544433443333 68999999999999999 55665553
Q ss_pred CCCCccccCChhhhhhhhcCCCeEeeCCCCCccccceecccCccccc-C---CCCchHHHHHHHHHHHHHHhhhhcCceE
Q 015723 198 VGDDVHIPLPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVL-R---GRTAVEVYFDYMRSFRVEFNEFFVDGII 273 (402)
Q Consensus 198 VGDt~~IpLP~WV~~~g~~~PDI~~tDr~G~rn~E~LSl~~D~~pvl-~---GRtp~~~Y~dfm~sF~~~fa~~~~~~vI 273 (402)
.||....|.=. +..+.| -+-+-+||+|-+-+- . +..+.+.|..+ ++++..- |
T Consensus 146 --~tC~~~~pGS~---g~e~~D----------A~~fA~WGvDylK~D~C~~~~~~~~~~y~~m----~~AL~~t-G---- 201 (412)
T PLN02692 146 --FTCSKTMPGSL---GHEEQD----------AKTFASWGIDYLKYDNCNNDGSKPTVRYPVM----TRALMKA-G---- 201 (412)
T ss_pred --cccCCCCCCch---HHHHHH----------HHHHHhcCCCEEeccccCCCCcchhHHHHHH----HHHHHHh-C----
Confidence 24432222200 000000 123567898876662 2 22333445444 4444331 1
Q ss_pred EEEEeeccCCCccCCCC-CCC--CCCCccCC
Q 015723 274 AEIEVGLGPCGELRYPT-YPA--KHGWKYPG 301 (402)
Q Consensus 274 ~eI~VGlGP~GELRYPS-yp~--~~gW~~pG 301 (402)
-.|..+|-|-|... |. +-. ...|++-|
T Consensus 202 RpI~~SlC~wg~~~-p~~w~~~~~n~WR~s~ 231 (412)
T PLN02692 202 RPIFFSLCEWGDMH-PALWGSKVGNSWRTTN 231 (412)
T ss_pred CCeEEEecCCCcCC-hhhhhhhcCCcccccc
Confidence 24666676766643 21 111 23488755
No 89
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=71.81 E-value=27 Score=34.16 Aligned_cols=120 Identities=15% Similarity=0.226 Sum_probs=72.6
Q ss_pred CccEEEeeccceeeCCCcccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEEEE
Q 015723 110 YVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVM 189 (402)
Q Consensus 110 ~vpvyVMlPLd~V~~~~~~~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvm 189 (402)
.+|+..|+=.+.| -.-.+++-++.++++||+||-+.. || .+.-.++++.++++||+.++++
T Consensus 87 ~~plv~m~Y~Npi-------~~~G~e~f~~~~~~aGvdgviipD-----lp-------~ee~~~~~~~~~~~gl~~i~lv 147 (256)
T TIGR00262 87 NIPIGLLTYYNLI-------FRKGVEEFYAKCKEVGVDGVLVAD-----LP-------LEESGDLVEAAKKHGVKPIFLV 147 (256)
T ss_pred CCCEEEEEeccHH-------hhhhHHHHHHHHHHcCCCEEEECC-----CC-------hHHHHHHHHHHHHCCCcEEEEE
Confidence 3565566544432 124677889999999999999983 23 2457889999999999998777
Q ss_pred eeeccCCCCCCCccccCChhhhhhhhcCC-CeEeeCCCCCccccceecccCcccccCCCCc-hHHHHHHHHHHHHHHhhh
Q 015723 190 SFHECGGNVGDDVHIPLPQWVMEIGQNNP-EIYFTDREGRRNSECLTWGIDKERVLRGRTA-VEVYFDYMRSFRVEFNEF 267 (402)
Q Consensus 190 sFHqCGgNVGDt~~IpLP~WV~~~g~~~P-DI~~tDr~G~rn~E~LSl~~D~~pvl~GRtp-~~~Y~dfm~sF~~~fa~~ 267 (402)
+ |+- .+.-+..+.+.-+ =|++....|..-. |+. .+.-.++.+..|+...
T Consensus 148 ~-----------P~T-~~eri~~i~~~~~gfiy~vs~~G~TG~---------------~~~~~~~~~~~i~~lr~~~~-- 198 (256)
T TIGR00262 148 A-----------PNA-DDERLKQIAEKSQGFVYLVSRAGVTGA---------------RNRAASALNELVKRLKAYSA-- 198 (256)
T ss_pred C-----------CCC-CHHHHHHHHHhCCCCEEEEECCCCCCC---------------cccCChhHHHHHHHHHhhcC--
Confidence 6 333 2345444444433 2555455544321 211 2334566666665431
Q ss_pred hcCceEEEEEeeccCC
Q 015723 268 FVDGIIAEIEVGLGPC 283 (402)
Q Consensus 268 ~~~~vI~eI~VGlGP~ 283 (402)
..|.||.|=.
T Consensus 199 ------~pi~vgfGI~ 208 (256)
T TIGR00262 199 ------KPVLVGFGIS 208 (256)
T ss_pred ------CCEEEeCCCC
Confidence 1477777753
No 90
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=71.79 E-value=4.3 Score=40.90 Aligned_cols=54 Identities=17% Similarity=0.231 Sum_probs=38.3
Q ss_pred HHHHHc-CcceEEEeeeeee-----eecCCCceecchHHHHHHHHHHHc-CCeEEEEEeeeccCC
Q 015723 139 KILKSI-NVDGVMVDCWWGI-----VEAHTPQVYNWSGYRRLFQIVREL-ELKLQVVMSFHECGG 196 (402)
Q Consensus 139 ~~LK~a-GVdgV~vdVWWGi-----VE~~~p~~Ydws~Y~~l~~mvr~~-GLKv~vvmsFHqCGg 196 (402)
++..++ |+|+|.+-.-|+. +.++.=.+|-+-+++++++.+++. |..+ .+|.||-
T Consensus 162 ~~qiea~Gad~I~i~Ddwa~~~~~~LSpe~f~efv~P~~krIi~~ik~~~g~pi----ilH~cG~ 222 (321)
T cd03309 162 ERRIKHLEPDLLVYHDDLGSQKGSFISPATFREFILPRMQRIFDFLRSNTSALI----VHHSCGA 222 (321)
T ss_pred HHHHHHhCCCEEEEeCCCccccCCccCHHHHHHHHHHHHHHHHHHHHhccCCce----EEEeCCC
Confidence 333445 9999998777775 454333445599999999999998 5444 4589984
No 91
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=71.46 E-value=8.4 Score=39.49 Aligned_cols=53 Identities=15% Similarity=0.291 Sum_probs=38.4
Q ss_pred cccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEEEEe
Q 015723 127 ELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMS 190 (402)
Q Consensus 127 ~~~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvms 190 (402)
-|.|+++.+.|+..||++||+.|+|-- |.|. .-+++-++++.++||-|++-|+
T Consensus 48 PLad~~~C~rDi~~l~~LgiNtIRVY~----vdp~-------~nHd~CM~~~~~aGIYvi~Dl~ 100 (314)
T PF03198_consen 48 PLADPEACKRDIPLLKELGINTIRVYS----VDPS-------KNHDECMSAFADAGIYVILDLN 100 (314)
T ss_dssp GGG-HHHHHHHHHHHHHHT-SEEEES-------TT-------S--HHHHHHHHHTT-EEEEES-
T ss_pred cccCHHHHHHhHHHHHHcCCCEEEEEE----eCCC-------CCHHHHHHHHHhCCCEEEEecC
Confidence 367889999999999999999999863 4442 2589999999999999988665
No 92
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=71.17 E-value=14 Score=42.22 Aligned_cols=48 Identities=19% Similarity=0.342 Sum_probs=38.5
Q ss_pred CcccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEE
Q 015723 126 CELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQV 187 (402)
Q Consensus 126 ~~~~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~v 187 (402)
+..++++++++||+.||++|+|.|++- +.-|. .+..++|-+.||-|+-
T Consensus 315 G~~~~~~~~~~dl~lmk~~n~N~vRts---HyP~~-----------~~~ydLcDelGllV~~ 362 (808)
T COG3250 315 GRVTDEDAMERDLKLMKEANMNSVRTS---HYPNS-----------EEFYDLCDELGLLVID 362 (808)
T ss_pred ccccCHHHHHHHHHHHHHcCCCEEEec---CCCCC-----------HHHHHHHHHhCcEEEE
Confidence 456789999999999999999999985 55444 3567788888888864
No 93
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=71.04 E-value=12 Score=40.24 Aligned_cols=65 Identities=17% Similarity=0.315 Sum_probs=48.9
Q ss_pred cChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCcee-------------cchHHHHHHHHHHHcCCeEEEEEeeeccC
Q 015723 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVY-------------NWSGYRRLFQIVRELELKLQVVMSFHECG 195 (402)
Q Consensus 129 ~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Y-------------dws~Y~~l~~mvr~~GLKv~vvmsFHqCG 195 (402)
-+-+.+.+.|..||++||++|-+.-..-.-+ ....| ....++++++.++++||||++=+-+.-|+
T Consensus 24 G~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~--~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v~NH~~ 101 (543)
T TIGR02403 24 GDLRGIIEKLDYLKKLGVDYIWLNPFYVSPQ--KDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMVFNHTS 101 (543)
T ss_pred cCHHHHHHhHHHHHHcCCCEEEECCcccCCC--CCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEECccccc
Confidence 4668999999999999999998765532211 11234 23579999999999999999887776565
No 94
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=71.03 E-value=4.7 Score=39.72 Aligned_cols=56 Identities=16% Similarity=0.234 Sum_probs=39.5
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeecCCCceec---chHHHHHHHHHHHcCCeEEEEEeeeccCC
Q 015723 135 VNQLKILKSINVDGVMVDCWWGIVEAHTPQVYN---WSGYRRLFQIVRELELKLQVVMSFHECGG 196 (402)
Q Consensus 135 ~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Yd---ws~Y~~l~~mvr~~GLKv~vvmsFHqCGg 196 (402)
.+-++++.++|+++|.+..=|+.-.--+|..|. +-+++++++-+++. .+ ..|-||.
T Consensus 183 ~~~~~~~~~aGad~I~i~d~~a~~~~lsp~~f~ef~~p~~~~i~~~i~~~----~~--ilH~cG~ 241 (339)
T PRK06252 183 IEYAKAQLEAGADVICIADPSASPELLGPKMFEEFVLPYLNKIIDEVKGL----PT--ILHICGD 241 (339)
T ss_pred HHHHHHHHHcCCCEEEeCCCCccccccCHHHHHHHHHHHHHHHHHHhccC----Cc--EEEECCC
Confidence 445566778999999998888642112344554 88999999999876 23 4688974
No 95
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=70.82 E-value=14 Score=37.70 Aligned_cols=85 Identities=8% Similarity=0.145 Sum_probs=55.8
Q ss_pred ccChHHHHHHHHHHHHcC--cceEEEeeeeeeeecCCCceecch-----HHHHHHHHHHHcCCeEEEEEeeeccCCCCCC
Q 015723 128 LVDPEILVNQLKILKSIN--VDGVMVDCWWGIVEAHTPQVYNWS-----GYRRLFQIVRELELKLQVVMSFHECGGNVGD 200 (402)
Q Consensus 128 ~~~~~~l~~dL~~LK~aG--VdgV~vdVWWGiVE~~~p~~Ydws-----~Y~~l~~mvr~~GLKv~vvmsFHqCGgNVGD 200 (402)
..+.+.+.+-++.+++.| ++++.+|.+|..- -+.|.|+ ..+++++.+++.|+|+.+ ..|
T Consensus 39 ~~~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~~----~~~f~~d~~~FPd~~~~~~~l~~~G~~~~~--~~~-------- 104 (441)
T PF01055_consen 39 YYNQDEVREVIDRYRSNGIPLDVIWIDDDYQDG----YGDFTWDPERFPDPKQMIDELHDQGIKVVL--WVH-------- 104 (441)
T ss_dssp BTSHHHHHHHHHHHHHTT--EEEEEE-GGGSBT----TBTT-B-TTTTTTHHHHHHHHHHTT-EEEE--EEE--------
T ss_pred CCCHHHHHHHHHHHHHcCCCccceecccccccc----ccccccccccccchHHHHHhHhhCCcEEEE--Eee--------
Confidence 356888999999999866 5889999998762 2244444 689999999999999966 543
Q ss_pred CccccCChh---hhhhhhcCCCeEeeCCCCC
Q 015723 201 DVHIPLPQW---VMEIGQNNPEIYFTDREGR 228 (402)
Q Consensus 201 t~~IpLP~W---V~~~g~~~PDI~~tDr~G~ 228 (402)
|.|....- ..+.++ ..+++.++.+|.
T Consensus 105 -P~v~~~~~~~~~~~~~~-~~~~~v~~~~g~ 133 (441)
T PF01055_consen 105 -PFVSNDSPDYENYDEAK-EKGYLVKNPDGS 133 (441)
T ss_dssp -SEEETTTTB-HHHHHHH-HTT-BEBCTTSS
T ss_pred -cccCCCCCcchhhhhHh-hcCceeecccCC
Confidence 44444433 233333 237888898883
No 96
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=70.16 E-value=23 Score=36.02 Aligned_cols=76 Identities=18% Similarity=0.223 Sum_probs=52.7
Q ss_pred HHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCccccCChhhhhhhh
Q 015723 136 NQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQ 215 (402)
Q Consensus 136 ~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsFHqCGgNVGDt~~IpLP~WV~~~g~ 215 (402)
++|+...+.||+.|+|..-+... ..-.+.++.+|+.|+++.+.+.. ..-.-|..+.+..+
T Consensus 92 ~dl~~a~~~gvd~iri~~~~~e~----------~~~~~~i~~ak~~G~~v~~~l~~----------a~~~~~e~l~~~a~ 151 (337)
T PRK08195 92 DDLKMAYDAGVRVVRVATHCTEA----------DVSEQHIGLARELGMDTVGFLMM----------SHMAPPEKLAEQAK 151 (337)
T ss_pred HHHHHHHHcCCCEEEEEEecchH----------HHHHHHHHHHHHCCCeEEEEEEe----------ccCCCHHHHHHHHH
Confidence 67999999999999988744332 24689999999999999886662 23345666665432
Q ss_pred c----CCC-eEeeCCCCCccc
Q 015723 216 N----NPE-IYFTDREGRRNS 231 (402)
Q Consensus 216 ~----~PD-I~~tDr~G~rn~ 231 (402)
+ -+| |.++|-.|.-.+
T Consensus 152 ~~~~~Ga~~i~i~DT~G~~~P 172 (337)
T PRK08195 152 LMESYGAQCVYVVDSAGALLP 172 (337)
T ss_pred HHHhCCCCEEEeCCCCCCCCH
Confidence 2 233 566777776444
No 97
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=69.70 E-value=8.9 Score=45.09 Aligned_cols=62 Identities=15% Similarity=0.352 Sum_probs=43.9
Q ss_pred ChHHHHHHHHHHHHcCcceEEEe-ee-eeeeec-C----------CCceecch-------------------------HH
Q 015723 130 DPEILVNQLKILKSINVDGVMVD-CW-WGIVEA-H----------TPQVYNWS-------------------------GY 171 (402)
Q Consensus 130 ~~~~l~~dL~~LK~aGVdgV~vd-VW-WGiVE~-~----------~p~~Ydws-------------------------~Y 171 (402)
+-.++.+.|..||++||+.|.+- ++ .+.+.. . +...|+|- .+
T Consensus 478 tf~gl~ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~ynWGYdp~~yfape~~Ygtdp~dp~~ri~Ef 557 (1111)
T TIGR02102 478 TFAAFVEKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNYNWGYDPQNYFALSGMYSEDPKDPELRIAEF 557 (1111)
T ss_pred CHHHHHHhHHHHHHcCCCEEEEcCccccccccccccccccccccccccccccCCCcCcCcccccccccCCcCccccHHHH
Confidence 44688889999999999999763 43 333321 0 12245554 48
Q ss_pred HHHHHHHHHcCCeEEEEEee
Q 015723 172 RRLFQIVRELELKLQVVMSF 191 (402)
Q Consensus 172 ~~l~~mvr~~GLKv~vvmsF 191 (402)
+++++.++++||+|++=+-|
T Consensus 558 K~LV~alH~~GI~VILDVVy 577 (1111)
T TIGR02102 558 KNLINEIHKRGMGVILDVVY 577 (1111)
T ss_pred HHHHHHHHHCCCEEEEeccc
Confidence 99999999999999775555
No 98
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=69.39 E-value=89 Score=31.59 Aligned_cols=30 Identities=30% Similarity=0.617 Sum_probs=27.6
Q ss_pred cccChHHHHHHHHHHHHcCcceEEEeeeee
Q 015723 127 ELVDPEILVNQLKILKSINVDGVMVDCWWG 156 (402)
Q Consensus 127 ~~~~~~~l~~dL~~LK~aGVdgV~vdVWWG 156 (402)
.+.+++.+++|.+..|++||+|-.+.-.|-
T Consensus 53 dl~~p~v~~~Q~~lA~~~GI~gF~~~~Ywf 82 (345)
T PF14307_consen 53 DLRDPEVMEKQAELAKEYGIDGFCFYHYWF 82 (345)
T ss_pred cCCCHHHHHHHHHHHHHhCCCEEEEEeeec
Confidence 367999999999999999999999998887
No 99
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=69.29 E-value=28 Score=34.65 Aligned_cols=84 Identities=14% Similarity=0.287 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHHHcCc--ceEEEeeeeeeeecCCCceecch-----HHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCcc
Q 015723 131 PEILVNQLKILKSINV--DGVMVDCWWGIVEAHTPQVYNWS-----GYRRLFQIVRELELKLQVVMSFHECGGNVGDDVH 203 (402)
Q Consensus 131 ~~~l~~dL~~LK~aGV--dgV~vdVWWGiVE~~~p~~Ydws-----~Y~~l~~mvr~~GLKv~vvmsFHqCGgNVGDt~~ 203 (402)
.+.+.+-++.+++.+| |+|.+|.=|-.-+...-+.|+|. --+++++.+++.|+|+++ ..| |.
T Consensus 28 q~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~--~i~---------P~ 96 (317)
T cd06599 28 QEALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAP--NIK---------PG 96 (317)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEE--EeC---------Cc
Confidence 6788888999998775 78888743432222122345554 378999999999999976 443 22
Q ss_pred ccC--ChhhhhhhhcCCCeEeeCCCCC
Q 015723 204 IPL--PQWVMEIGQNNPEIYFTDREGR 228 (402)
Q Consensus 204 IpL--P~WV~~~g~~~PDI~~tDr~G~ 228 (402)
|.. |. -+++++ -+.|.++.+|.
T Consensus 97 i~~~~~~--y~e~~~-~g~~v~~~~g~ 120 (317)
T cd06599 97 LLQDHPR--YKELKE-AGAFIKPPDGR 120 (317)
T ss_pred ccCCCHH--HHHHHH-CCcEEEcCCCC
Confidence 221 22 334443 37888887775
No 100
>PRK12313 glycogen branching enzyme; Provisional
Probab=69.17 E-value=12 Score=40.88 Aligned_cols=58 Identities=14% Similarity=0.163 Sum_probs=41.5
Q ss_pred cChHHHHHHH-HHHHHcCcceEEEeeeeeeeecCCCceecc-----------------hHHHHHHHHHHHcCCeEEEEEe
Q 015723 129 VDPEILVNQL-KILKSINVDGVMVDCWWGIVEAHTPQVYNW-----------------SGYRRLFQIVRELELKLQVVMS 190 (402)
Q Consensus 129 ~~~~~l~~dL-~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydw-----------------s~Y~~l~~mvr~~GLKv~vvms 190 (402)
-+-+.+.+.| ..||++||+.|.+-=- .| .|...+| ..++++++.++++||+|++=+-
T Consensus 167 g~~~~~~~~ll~yl~~LGv~~i~L~Pi---~~--~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD~V 241 (633)
T PRK12313 167 LSYRELADELIPYVKEMGYTHVEFMPL---ME--HPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIGVILDWV 241 (633)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEeCch---hc--CCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 3456777775 9999999999985321 12 1222233 3499999999999999977666
Q ss_pred e
Q 015723 191 F 191 (402)
Q Consensus 191 F 191 (402)
+
T Consensus 242 ~ 242 (633)
T PRK12313 242 P 242 (633)
T ss_pred C
Confidence 6
No 101
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=69.10 E-value=3.5 Score=42.59 Aligned_cols=53 Identities=17% Similarity=0.360 Sum_probs=40.9
Q ss_pred EEEeee---eeeeecCCCceecchHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCccccCChhhhh
Q 015723 149 VMVDCW---WGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVME 212 (402)
Q Consensus 149 V~vdVW---WGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsFHqCGgNVGDt~~IpLP~WV~~ 212 (402)
+-++++ |..+|+ ++|+|+|..=|++++-+|++||++ -+|--= =.-..|.|+..
T Consensus 60 ~iTpenemKwe~i~p-~~G~f~Fe~AD~ia~FAr~h~m~l----hGHtLv------W~~q~P~W~~~ 115 (345)
T COG3693 60 QITPENEMKWEAIEP-ERGRFNFEAADAIANFARKHNMPL----HGHTLV------WHSQVPDWLFG 115 (345)
T ss_pred ccccccccccccccC-CCCccCccchHHHHHHHHHcCCee----ccceee------ecccCCchhhc
Confidence 445666 999999 899999999999999999999987 445110 11367888873
No 102
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=68.93 E-value=42 Score=32.82 Aligned_cols=77 Identities=14% Similarity=0.159 Sum_probs=54.4
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCccccCChhhhhhh
Q 015723 135 VNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIG 214 (402)
Q Consensus 135 ~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsFHqCGgNVGDt~~IpLP~WV~~~g 214 (402)
.++|+..+..||+.|++.+ ...+++...+.++.+++.|++|.+-+.. ..-.-|..+.+..
T Consensus 85 ~~~l~~a~~~gv~~iri~~----------~~~~~~~~~~~i~~ak~~G~~v~~~~~~----------a~~~~~~~~~~~~ 144 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAF----------HKHEFDEALPLIKAIKEKGYEVFFNLMA----------ISGYSDEELLELL 144 (266)
T ss_pred HHHHHHHhcCCcCEEEEec----------ccccHHHHHHHHHHHHHCCCeEEEEEEe----------ecCCCHHHHHHHH
Confidence 4578888999999999965 1227889999999999999999876552 2224577777643
Q ss_pred h----cCCC-eEeeCCCCCccc
Q 015723 215 Q----NNPE-IYFTDREGRRNS 231 (402)
Q Consensus 215 ~----~~PD-I~~tDr~G~rn~ 231 (402)
+ .-+| |.+.|-.|.-++
T Consensus 145 ~~~~~~g~~~i~l~DT~G~~~P 166 (266)
T cd07944 145 ELVNEIKPDVFYIVDSFGSMYP 166 (266)
T ss_pred HHHHhCCCCEEEEecCCCCCCH
Confidence 2 2233 666777776554
No 103
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=67.95 E-value=7.1 Score=38.32 Aligned_cols=76 Identities=14% Similarity=0.276 Sum_probs=47.0
Q ss_pred HHHHHHHHcCcceEEEeeeeeeeecCCCc---eecchHHHHHHHHHHHcCC-eEEEEEeeeccCCCCCCCccccCChhhh
Q 015723 136 NQLKILKSINVDGVMVDCWWGIVEAHTPQ---VYNWSGYRRLFQIVRELEL-KLQVVMSFHECGGNVGDDVHIPLPQWVM 211 (402)
Q Consensus 136 ~dL~~LK~aGVdgV~vdVWWGiVE~~~p~---~Ydws~Y~~l~~mvr~~GL-Kv~vvmsFHqCGgNVGDt~~IpLP~WV~ 211 (402)
+-++++.++|+|+|.+..-++.+= +|. +|-+-+++++++.+++.|. ++ -+|-||- .+ ++=.++.
T Consensus 186 ~~~~~~~~~G~d~i~~~d~~~~~i--sp~~f~e~~~P~~k~i~~~i~~~g~~~~----~lH~cG~-----~~-~~~~~l~ 253 (343)
T PF01208_consen 186 EYAKAQIEAGADGIFIFDSSGSLI--SPEMFEEFILPYLKKIIDAIKEAGKDPV----ILHICGN-----TT-PILDDLA 253 (343)
T ss_dssp HHHHHHHHTT-SEEEEEETTGGGS---HHHHHHHTHHHHHHHHHHHHHHETE-E----EEEETTH-----G--GGHHHHH
T ss_pred HHHHHHHHhCCCcccccccccCCC--CHHHHHHHHHHHHHHHHHHHHHhCCCce----EEEECCc-----hH-HHHHHHH
Confidence 345677799999997777333222 243 6778999999999999999 55 5699974 22 2333333
Q ss_pred hhhhcCCCeEeeCCC
Q 015723 212 EIGQNNPEIYFTDRE 226 (402)
Q Consensus 212 ~~g~~~PDI~~tDr~ 226 (402)
+...|++-.|..
T Consensus 254 ---~~g~d~~~~~~~ 265 (343)
T PF01208_consen 254 ---DLGADVLSVDEK 265 (343)
T ss_dssp ---TSS-SEEEE-TT
T ss_pred ---hcCCCEEEEcCC
Confidence 334566666543
No 104
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=67.86 E-value=17 Score=38.78 Aligned_cols=65 Identities=12% Similarity=0.226 Sum_probs=48.2
Q ss_pred cChHHHHHHHHHHHHcCcceEEEeeeeeeeecCC-Cceec-------------chHHHHHHHHHHHcCCeEEEEEeeecc
Q 015723 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEAHT-PQVYN-------------WSGYRRLFQIVRELELKLQVVMSFHEC 194 (402)
Q Consensus 129 ~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~-p~~Yd-------------ws~Y~~l~~mvr~~GLKv~vvmsFHqC 194 (402)
=|-+.+.+.|..||++||++|-+.-.. |..+ ...|+ ...+++|++.+++.||||++=+-+.-+
T Consensus 25 Gdl~gi~~~Ldyl~~LGv~~i~L~Pi~---~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~V~NH~ 101 (539)
T TIGR02456 25 GDFPGLTSKLDYLKWLGVDALWLLPFF---QSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDLVLNHT 101 (539)
T ss_pred cCHHHHHHhHHHHHHCCCCEEEECCCc---CCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEeccCcC
Confidence 466899999999999999999776542 2211 12232 367899999999999999887777655
Q ss_pred CC
Q 015723 195 GG 196 (402)
Q Consensus 195 Gg 196 (402)
+.
T Consensus 102 s~ 103 (539)
T TIGR02456 102 SD 103 (539)
T ss_pred CC
Confidence 43
No 105
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=67.78 E-value=14 Score=38.72 Aligned_cols=66 Identities=11% Similarity=0.055 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCcee---cc-------------------hHHHHHHHHHHHcCCeEEEE
Q 015723 131 PEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVY---NW-------------------SGYRRLFQIVRELELKLQVV 188 (402)
Q Consensus 131 ~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Y---dw-------------------s~Y~~l~~mvr~~GLKv~vv 188 (402)
++.+.+.|..||.+||++|-+.-..-.......-.| |+ ..+++|++.+++.||||++=
T Consensus 21 ~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi~D 100 (479)
T PRK09441 21 WNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVYAD 100 (479)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEEEE
Confidence 567899999999999999988764322211001122 22 34899999999999999988
Q ss_pred EeeeccCC
Q 015723 189 MSFHECGG 196 (402)
Q Consensus 189 msFHqCGg 196 (402)
+-|--|++
T Consensus 101 ~V~NH~~~ 108 (479)
T PRK09441 101 VVLNHKAG 108 (479)
T ss_pred ECcccccC
Confidence 88866765
No 106
>PLN02389 biotin synthase
Probab=67.69 E-value=11 Score=39.03 Aligned_cols=48 Identities=13% Similarity=0.108 Sum_probs=38.2
Q ss_pred HHHHHHHHHHcCcceEEEeeeeeeeecCCC-------ceecchHHHHHHHHHHHcCCeEEE
Q 015723 134 LVNQLKILKSINVDGVMVDCWWGIVEAHTP-------QVYNWSGYRRLFQIVRELELKLQV 187 (402)
Q Consensus 134 l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p-------~~Ydws~Y~~l~~mvr~~GLKv~v 187 (402)
-+++|+.||+||++.+.+ .+|. .+ ..-+|+.+.+.++.+++.||++..
T Consensus 177 ~~E~l~~LkeAGld~~~~-----~LeT-s~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v~s 231 (379)
T PLN02389 177 EKEQAAQLKEAGLTAYNH-----NLDT-SREYYPNVITTRSYDDRLETLEAVREAGISVCS 231 (379)
T ss_pred CHHHHHHHHHcCCCEEEe-----eecC-ChHHhCCcCCCCCHHHHHHHHHHHHHcCCeEeE
Confidence 357899999999999988 4663 22 123899999999999999999844
No 107
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=67.58 E-value=95 Score=31.44 Aligned_cols=124 Identities=12% Similarity=0.195 Sum_probs=80.2
Q ss_pred CCcccChHHHHHHHHHHHHcCcceEEEee----eeeee--------ec--------CCCceecchHHHHHHHHHHHcCCe
Q 015723 125 NCELVDPEILVNQLKILKSINVDGVMVDC----WWGIV--------EA--------HTPQVYNWSGYRRLFQIVRELELK 184 (402)
Q Consensus 125 ~~~~~~~~~l~~dL~~LK~aGVdgV~vdV----WWGiV--------E~--------~~p~~Ydws~Y~~l~~mvr~~GLK 184 (402)
...+.+.+.|++.|..|...++|...+-. -|-+- +. ...+.|.=+.+++|++.+++.|+.
T Consensus 11 aR~f~~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~elv~yA~~rgI~ 90 (329)
T cd06568 11 ARHFFTVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYAAERHIT 90 (329)
T ss_pred cCCCcCHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHcCCE
Confidence 34577899999999999999998876533 24321 11 123568888899999999999999
Q ss_pred EEEEEeeeccCCCCCCCccccCChhhhhhhhcCCCeEeeCCC---------------------------------CCccc
Q 015723 185 LQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDRE---------------------------------GRRNS 231 (402)
Q Consensus 185 v~vvmsFHqCGgNVGDt~~IpLP~WV~~~g~~~PDI~~tDr~---------------------------------G~rn~ 231 (402)
|++-+- .|.=.....+.+|++.-.... .--..
T Consensus 91 vIPEiD---------------~PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~v~~E~~~~f~~ 155 (329)
T cd06568 91 VVPEID---------------MPGHTNAALAAYPELNCDGKAKPLYTGIEVGFSSLDVDKPTTYEFVDDVFRELAALTPG 155 (329)
T ss_pred EEEecC---------------CcHHHHHHHHhChhhccCCCCCccccccCCCCcccCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 988433 333222222334433211100 00023
Q ss_pred cceecccCcccccCCCCchHHHHHHHHHHHHHHhhh
Q 015723 232 ECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEF 267 (402)
Q Consensus 232 E~LSl~~D~~pvl~GRtp~~~Y~dfm~sF~~~fa~~ 267 (402)
.|+-+|.|+.+. +..+.|..|++...+.+.+.
T Consensus 156 ~~iHiGgDE~~~----~~~~~~~~f~~~~~~~v~~~ 187 (329)
T cd06568 156 PYIHIGGDEAHS----TPHDDYAYFVNRVRAIVAKY 187 (329)
T ss_pred CeEEEecccCCC----CchHHHHHHHHHHHHHHHHC
Confidence 788899999764 34678888888888777663
No 108
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=67.48 E-value=14 Score=34.82 Aligned_cols=53 Identities=17% Similarity=0.198 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeeeeecC-CCceecch--HHHHHHHHHHHcCCeEEEE
Q 015723 132 EILVNQLKILKSINVDGVMVDCWWGIVEAH-TPQVYNWS--GYRRLFQIVRELELKLQVV 188 (402)
Q Consensus 132 ~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~-~p~~Ydws--~Y~~l~~mvr~~GLKv~vv 188 (402)
-.+++.|+.++++|+++|++.+- ++. .....+|+ ..+++.++++++||++..+
T Consensus 16 ~~~~e~~~~~~~~G~~~iEl~~~----~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~~ 71 (284)
T PRK13210 16 LSWEERLVFAKELGFDFVEMSVD----ESDERLARLDWSKEERLSLVKAIYETGVRIPSM 71 (284)
T ss_pred CCHHHHHHHHHHcCCCeEEEecC----CcccccccccCCHHHHHHHHHHHHHcCCCceEE
Confidence 37889999999999999999532 221 12233554 4788999999999999754
No 109
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=67.27 E-value=7 Score=36.91 Aligned_cols=53 Identities=13% Similarity=0.087 Sum_probs=46.1
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEEE
Q 015723 135 VNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVV 188 (402)
Q Consensus 135 ~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vv 188 (402)
..+.+...++|.|.|.+-++|+.+.+ +...+......++.+.+++.|||+++-
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~-~~~~~~~~~i~~v~~~~~~~gl~vIlE 131 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGS-GNEDEVIEEIAAVVEECHKYGLKVILE 131 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHT-THHHHHHHHHHHHHHHHHTSEEEEEEE
T ss_pred HHHHHHHHHcCCceeeeecccccccc-ccHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 67888899999999999999999887 667788888889999999999999874
No 110
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=66.87 E-value=68 Score=32.87 Aligned_cols=127 Identities=20% Similarity=0.280 Sum_probs=84.5
Q ss_pred ccChHHHHHHHHHHHHcCcceEEEeee--eeeeec----------CCCceecchHHHHHHHHHHHcCCeEEEE-Eeeecc
Q 015723 128 LVDPEILVNQLKILKSINVDGVMVDCW--WGIVEA----------HTPQVYNWSGYRRLFQIVRELELKLQVV-MSFHEC 194 (402)
Q Consensus 128 ~~~~~~l~~dL~~LK~aGVdgV~vdVW--WGiVE~----------~~p~~Ydws~Y~~l~~mvr~~GLKv~vv-msFHqC 194 (402)
..+++.+++-|+.+|+.++|.|.||+= +|.|== .....+ -.-.+++++.++++||.+++= .+|
T Consensus 9 a~~~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~~~-i~D~~~l~~~l~e~gIY~IARIv~F--- 84 (316)
T PF13200_consen 9 AGSPERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVKPY-IKDLKALVKKLKEHGIYPIARIVVF--- 84 (316)
T ss_pred cCCHHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhccccccc-ccCHHHHHHHHHHCCCEEEEEEEEe---
Confidence 457789999999999999999999996 664411 111112 356889999999999999873 344
Q ss_pred CCCCCCCccccCChhhhhhhhcCCCeEeeCCCCCccc--cceecccCcccccCCCCchHHHHHHHHHHHHHHhhhhcCce
Q 015723 195 GGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRRNS--ECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGI 272 (402)
Q Consensus 195 GgNVGDt~~IpLP~WV~~~g~~~PDI~~tDr~G~rn~--E~LSl~~D~~pvl~GRtp~~~Y~dfm~sF~~~fa~~~~~~v 272 (402)
-|+. +. +++||..+....|..=. +-.+ |+|- -.+.-++|.-.++.+.++. |
T Consensus 85 ----kD~~-------la---~~~pe~av~~~~G~~w~d~~~~~-WvnP--------~~~evw~Y~i~IA~Eaa~~-G--- 137 (316)
T PF13200_consen 85 ----KDPV-------LA---EAHPEWAVKTKDGSVWRDNEGEA-WVNP--------YSKEVWDYNIDIAKEAAKL-G--- 137 (316)
T ss_pred ----cChH-------Hh---hhChhhEEECCCCCcccCCCCCc-cCCC--------CCHHHHHHHHHHHHHHHHc-C---
Confidence 1221 11 45777666666664222 1122 2221 1788899999999998874 4
Q ss_pred EEEEEeeccCCCccCCCC
Q 015723 273 IAEIEVGLGPCGELRYPT 290 (402)
Q Consensus 273 I~eI~VGlGP~GELRYPS 290 (402)
+.||+.= =+|||+
T Consensus 138 FdEIqfD-----YIRFP~ 150 (316)
T PF13200_consen 138 FDEIQFD-----YIRFPD 150 (316)
T ss_pred CCEEEee-----eeecCC
Confidence 5666542 358887
No 111
>PRK09989 hypothetical protein; Provisional
Probab=66.23 E-value=15 Score=34.66 Aligned_cols=43 Identities=12% Similarity=0.172 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEE
Q 015723 133 ILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQV 187 (402)
Q Consensus 133 ~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~v 187 (402)
-+.+.|+++|++|.++|++..-| .++ -+++.++++++||++..
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~~~~---------~~~---~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFLFPY---------DYS---TLQIQKQLEQNHLTLAL 58 (258)
T ss_pred CHHHHHHHHHHcCCCEEEECCcc---------cCC---HHHHHHHHHHcCCcEEE
Confidence 57899999999999999994211 233 46788889999999853
No 112
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=64.63 E-value=39 Score=33.85 Aligned_cols=85 Identities=16% Similarity=0.298 Sum_probs=56.7
Q ss_pred ccChHHHHHHHHHHHHcC--cceEEEeeeeeeeecCCCceecch-----HHHHHHHHHHHcCCeEEEEEeeeccCCCCCC
Q 015723 128 LVDPEILVNQLKILKSIN--VDGVMVDCWWGIVEAHTPQVYNWS-----GYRRLFQIVRELELKLQVVMSFHECGGNVGD 200 (402)
Q Consensus 128 ~~~~~~l~~dL~~LK~aG--VdgV~vdVWWGiVE~~~p~~Ydws-----~Y~~l~~mvr~~GLKv~vvmsFHqCGgNVGD 200 (402)
..+.+.+.+-++.+++.| +|++.+|.-|.. .-+.|+|. --+++++.+++.|+|+++++.
T Consensus 20 y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~----~~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~---------- 85 (339)
T cd06604 20 YYPEEEVREIADEFRERDIPCDAIYLDIDYMD----GYRVFTWDKERFPDPKELIKELHEQGFKVVTIID---------- 85 (339)
T ss_pred CCCHHHHHHHHHHHHHhCCCcceEEECchhhC----CCCceeeccccCCCHHHHHHHHHHCCCEEEEEEe----------
Confidence 347788899999999877 488888866541 23345444 368999999999999977543
Q ss_pred CccccC-C-hhhhhhhhcCCCeEeeCCCCC
Q 015723 201 DVHIPL-P-QWVMEIGQNNPEIYFTDREGR 228 (402)
Q Consensus 201 t~~IpL-P-~WV~~~g~~~PDI~~tDr~G~ 228 (402)
|.|.. | .-+.+++.+ -+.|.++.+|.
T Consensus 86 -P~v~~~~~~~~~~e~~~-~g~~v~~~~g~ 113 (339)
T cd06604 86 -PGVKVDPGYDVYEEGLE-NDYFVKDPDGE 113 (339)
T ss_pred -CceeCCCCChHHHHHHH-CCeEEECCCCC
Confidence 33332 1 122333443 47788888875
No 113
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=64.62 E-value=77 Score=31.67 Aligned_cols=63 Identities=8% Similarity=0.196 Sum_probs=49.1
Q ss_pred CCcccChHHHHHHHHHHHHcCcceEEE---eee-eeee-e-----------------------cCCCceecchHHHHHHH
Q 015723 125 NCELVDPEILVNQLKILKSINVDGVMV---DCW-WGIV-E-----------------------AHTPQVYNWSGYRRLFQ 176 (402)
Q Consensus 125 ~~~~~~~~~l~~dL~~LK~aGVdgV~v---dVW-WGiV-E-----------------------~~~p~~Ydws~Y~~l~~ 176 (402)
...+.+.+.|++-|+.|...++|.+.+ |-| |-+- . ....+.|.=+.+++|++
T Consensus 10 aR~~~~~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv~ 89 (326)
T cd06564 10 GRKYYSMDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYTKEEFKELIA 89 (326)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCcccHHHHHHHHH
Confidence 345678899999999999999999986 333 3210 0 11467888999999999
Q ss_pred HHHHcCCeEEE
Q 015723 177 IVRELELKLQV 187 (402)
Q Consensus 177 mvr~~GLKv~v 187 (402)
.+++.|+.|++
T Consensus 90 yA~~rgI~vIP 100 (326)
T cd06564 90 YAKDRGVNIIP 100 (326)
T ss_pred HHHHcCCeEec
Confidence 99999999987
No 114
>PLN00196 alpha-amylase; Provisional
Probab=64.31 E-value=24 Score=37.20 Aligned_cols=64 Identities=8% Similarity=0.081 Sum_probs=47.1
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCcee------cc--------hHHHHHHHHHHHcCCeEEEEEeeeccC
Q 015723 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVY------NW--------SGYRRLFQIVRELELKLQVVMSFHECG 195 (402)
Q Consensus 130 ~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Y------dw--------s~Y~~l~~mvr~~GLKv~vvmsFHqCG 195 (402)
..+.+.+.|..||++||+.|-+.-- .|..++..| +- ..|+++++.++++||||++=+-|--|+
T Consensus 42 ~~~~i~~kldyL~~LGvtaIWL~P~---~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDvV~NH~~ 118 (428)
T PLN00196 42 WYNFLMGKVDDIAAAGITHVWLPPP---SHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINHRT 118 (428)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCC---CCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEECccCcc
Confidence 4678999999999999999988752 233222233 22 259999999999999998766665555
Q ss_pred C
Q 015723 196 G 196 (402)
Q Consensus 196 g 196 (402)
+
T Consensus 119 ~ 119 (428)
T PLN00196 119 A 119 (428)
T ss_pred c
Confidence 3
No 115
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=64.30 E-value=11 Score=37.12 Aligned_cols=75 Identities=13% Similarity=0.134 Sum_probs=50.2
Q ss_pred HHHHHHHHcCcceEEEeeeeeeeecCCCceec---chHHHHHHHHHHHc--CCeEEEEEeeeccCCCCCCCccccCChhh
Q 015723 136 NQLKILKSINVDGVMVDCWWGIVEAHTPQVYN---WSGYRRLFQIVREL--ELKLQVVMSFHECGGNVGDDVHIPLPQWV 210 (402)
Q Consensus 136 ~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Yd---ws~Y~~l~~mvr~~--GLKv~vvmsFHqCGgNVGDt~~IpLP~WV 210 (402)
+-++++.++|+++|.+..=|+.+ -+|.+|+ +-+++++++-+++. |.++ .|-|||+ . ++-.++
T Consensus 181 ~~~~~~ieaGad~i~i~d~~~~~--lsp~~f~ef~~P~~k~i~~~i~~~~~~~~i-----lh~cg~~----~--~~~~~~ 247 (335)
T cd00717 181 EYLKAQIEAGAQAVQIFDSWAGA--LSPEDFEEFVLPYLKRIIEEVKKRLPGVPV-----ILFAKGA----G--GLLEDL 247 (335)
T ss_pred HHHHHHHHhCCCEEEEeCccccc--CCHHHHHHHHHHHHHHHHHHHHHhCCCCCE-----EEEcCCC----H--HHHHHH
Confidence 33455667999999865546643 3477777 99999999999998 4433 4567753 2 455666
Q ss_pred hhhhhcCCCeEeeCCC
Q 015723 211 MEIGQNNPEIYFTDRE 226 (402)
Q Consensus 211 ~~~g~~~PDI~~tDr~ 226 (402)
.+ ...+++-.|..
T Consensus 248 ~~---~~~~~~s~d~~ 260 (335)
T cd00717 248 AQ---LGADVVGLDWR 260 (335)
T ss_pred Hh---cCCCEEEeCCC
Confidence 63 33577777765
No 116
>PLN02877 alpha-amylase/limit dextrinase
Probab=64.01 E-value=9.8 Score=44.21 Aligned_cols=59 Identities=22% Similarity=0.450 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHcCcceEEE-eee-eeee-ecC-----------------------------CCceecchH----------
Q 015723 133 ILVNQLKILKSINVDGVMV-DCW-WGIV-EAH-----------------------------TPQVYNWSG---------- 170 (402)
Q Consensus 133 ~l~~dL~~LK~aGVdgV~v-dVW-WGiV-E~~-----------------------------~p~~Ydws~---------- 170 (402)
+.-.-|+.||++||+.|.+ +++ .+.| |.. ....|+|-|
T Consensus 374 ~gi~hLk~LkelGVThVeLLPvfDf~tvdE~~~~~~~~~~~~l~~~~~~s~~~q~~v~~~~~~d~yNWGYDP~~YfaPEg 453 (970)
T PLN02877 374 AGVLHLKKLADAGLTHVHLLPTFQFGSVDDEKENWKCVDPKELEKLPPDSEEQQAAITAIQDDDGYNWGYNPVLWGVPKG 453 (970)
T ss_pred hHHHHHHHHHHcCCCEEEeCCccccCCcccccccccccccchhccccccchhhhhcccccccCCCCCCCCCccccCCCCc
Confidence 3345688889999999986 676 6554 211 023488876
Q ss_pred --------------HHHHHHHHHHcCCeEEEEEee
Q 015723 171 --------------YRRLFQIVRELELKLQVVMSF 191 (402)
Q Consensus 171 --------------Y~~l~~mvr~~GLKv~vvmsF 191 (402)
++++++.+.++||+|++=+-|
T Consensus 454 SYatdP~g~~RI~efk~mV~~lH~~GI~VImDVVy 488 (970)
T PLN02877 454 SYASNPDGPCRIIEFRKMVQALNRIGLRVVLDVVY 488 (970)
T ss_pred ccccCCCCcchHHHHHHHHHHHHHCCCEEEEEECC
Confidence 899999999999999764444
No 117
>PRK15108 biotin synthase; Provisional
Probab=63.19 E-value=1.2e+02 Score=30.97 Aligned_cols=54 Identities=13% Similarity=0.246 Sum_probs=41.5
Q ss_pred cChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEE
Q 015723 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQV 187 (402)
Q Consensus 129 ~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~v 187 (402)
.+++.+.+..+.+++.|+.-|.+..=| + .|-.-++.+|.++++.+++.|+++.+
T Consensus 76 ls~eEI~~~a~~~~~~G~~~i~i~~~g---~--~p~~~~~e~i~~~i~~ik~~~i~v~~ 129 (345)
T PRK15108 76 MEVEQVLESARKAKAAGSTRFCMGAAW---K--NPHERDMPYLEQMVQGVKAMGLETCM 129 (345)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecC---C--CCCcchHHHHHHHHHHHHhCCCEEEE
Confidence 355788888889999999998664334 1 34455789999999999999988743
No 118
>PRK14706 glycogen branching enzyme; Provisional
Probab=63.06 E-value=17 Score=40.15 Aligned_cols=59 Identities=14% Similarity=0.198 Sum_probs=42.2
Q ss_pred ccChHHHHHHH-HHHHHcCcceEEEeeeeeeeecCCCceecchH-----------------HHHHHHHHHHcCCeEEEEE
Q 015723 128 LVDPEILVNQL-KILKSINVDGVMVDCWWGIVEAHTPQVYNWSG-----------------YRRLFQIVRELELKLQVVM 189 (402)
Q Consensus 128 ~~~~~~l~~dL-~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~-----------------Y~~l~~mvr~~GLKv~vvm 189 (402)
+-.-+.+.+.| ..||++||+.|.+=- +.|- |...+|.+ ++++++.+.++||+|++=+
T Consensus 163 ~~ty~~~~~~l~~ylk~lG~t~velmP---v~e~--~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~ 237 (639)
T PRK14706 163 FLNYRELAHRLGEYVTYMGYTHVELLG---VMEH--PFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDW 237 (639)
T ss_pred ccCHHHHHHHHHHHHHHcCCCEEEccc---hhcC--CCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 44556677776 789999999998632 3442 33444543 8999999999999997654
Q ss_pred ee
Q 015723 190 SF 191 (402)
Q Consensus 190 sF 191 (402)
-+
T Consensus 238 v~ 239 (639)
T PRK14706 238 VP 239 (639)
T ss_pred cc
Confidence 44
No 119
>PRK04302 triosephosphate isomerase; Provisional
Probab=62.86 E-value=19 Score=33.94 Aligned_cols=44 Identities=11% Similarity=0.179 Sum_probs=35.8
Q ss_pred HHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEE
Q 015723 136 NQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQV 187 (402)
Q Consensus 136 ~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~v 187 (402)
..++.||++|+++|-++. +++.-.+..-.++++.+++.||.+++
T Consensus 76 ~~~~~l~~~G~~~vii~~--------ser~~~~~e~~~~v~~a~~~Gl~~I~ 119 (223)
T PRK04302 76 ILPEAVKDAGAVGTLINH--------SERRLTLADIEAVVERAKKLGLESVV 119 (223)
T ss_pred hHHHHHHHcCCCEEEEec--------cccccCHHHHHHHHHHHHHCCCeEEE
Confidence 458999999999998873 45555666788999999999999864
No 120
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=62.68 E-value=1.1e+02 Score=31.08 Aligned_cols=85 Identities=13% Similarity=0.153 Sum_probs=60.7
Q ss_pred CCcccChHHHHHHHHHHHHcCcceEEEee----eeeee--------ec-------------------CCCceecchHHHH
Q 015723 125 NCELVDPEILVNQLKILKSINVDGVMVDC----WWGIV--------EA-------------------HTPQVYNWSGYRR 173 (402)
Q Consensus 125 ~~~~~~~~~l~~dL~~LK~aGVdgV~vdV----WWGiV--------E~-------------------~~p~~Ydws~Y~~ 173 (402)
...+.+.+.+++-|..|...++|...+-. -|-+- |. ...+.|-=+.+++
T Consensus 11 aR~f~~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT~~di~e 90 (357)
T cd06563 11 SRHFFPVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYTQEEIRE 90 (357)
T ss_pred cccCcCHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceECHHHHHH
Confidence 34567889999999999999998876522 23211 10 0146799999999
Q ss_pred HHHHHHHcCCeEEEEEeeeccCCCCCCCccccCChhhhhhhhcCCCeEeeC
Q 015723 174 LFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTD 224 (402)
Q Consensus 174 l~~mvr~~GLKv~vvmsFHqCGgNVGDt~~IpLP~WV~~~g~~~PDI~~tD 224 (402)
|++.+++.|+.|++- |-.|.=.....+.+|++.-..
T Consensus 91 iv~yA~~rgI~VIPE---------------ID~PGH~~a~l~~~pel~~~~ 126 (357)
T cd06563 91 IVAYAAERGITVIPE---------------IDMPGHALAALAAYPELGCTG 126 (357)
T ss_pred HHHHHHHcCCEEEEe---------------cCCchhHHHHHHhCccccCCC
Confidence 999999999999883 456654444446788876543
No 121
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=62.27 E-value=36 Score=32.82 Aligned_cols=45 Identities=18% Similarity=0.152 Sum_probs=36.0
Q ss_pred HHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEEEEe
Q 015723 136 NQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMS 190 (402)
Q Consensus 136 ~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvms 190 (402)
+++++.++.|++.|++-.-... ..-..+.++.+++.|+++++.++
T Consensus 89 ~~i~~a~~~g~~~iri~~~~s~----------~~~~~~~i~~ak~~G~~v~~~~~ 133 (263)
T cd07943 89 DDLKMAADLGVDVVRVATHCTE----------ADVSEQHIGAARKLGMDVVGFLM 133 (263)
T ss_pred HHHHHHHHcCCCEEEEEechhh----------HHHHHHHHHHHHHCCCeEEEEEE
Confidence 7788999999999998664432 23578899999999999988654
No 122
>cd03310 CIMS_like CIMS - Cobalamine-independent methonine synthase, or MetE. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers both the N-and C-terminal barrel, and some single-barrel sequences, mostly from Archaea. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains from both barrels contribute to the binding o
Probab=62.00 E-value=31 Score=33.56 Aligned_cols=59 Identities=24% Similarity=0.161 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHcCcceEEEeee-eeeeecCCCceecchHHHHHHHHHHH-cCCeEEEEEeeeccCC
Q 015723 132 EILVNQLKILKSINVDGVMVDCW-WGIVEAHTPQVYNWSGYRRLFQIVRE-LELKLQVVMSFHECGG 196 (402)
Q Consensus 132 ~~l~~dL~~LK~aGVdgV~vdVW-WGiVE~~~p~~Ydws~Y~~l~~mvr~-~GLKv~vvmsFHqCGg 196 (402)
+...+.+++|+++|++.|.+|+= |+..-. + ..++....+++++.+.+ .|..+ ..|-||+
T Consensus 151 ~~~~~~~~~l~~~G~~~iqidEP~l~~~~~-s-~~~~~~~~~~~~~~~~~~~~~~~----~lHic~~ 211 (321)
T cd03310 151 EFLREQVKELKNRGIVVVQIDEPSLGAVGA-G-AFEDLEIVDAALEEVSLKSGGDV----EVHLCAP 211 (321)
T ss_pred HHHHHHHHHHHhcCCcEEEeCCCccccccc-c-ccchHHHHHHHHHHHhhccCCce----EEEECCC
Confidence 35677888999999999999985 665432 2 45788889999998876 33333 5688887
No 123
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=61.64 E-value=28 Score=33.81 Aligned_cols=64 Identities=11% Similarity=0.113 Sum_probs=46.9
Q ss_pred ccChHHHHHHHHHHHHcCcceEEEeeeeeeeecC---CCceecchHHHHHHHHHHHcCCeEEEEEeeeccC
Q 015723 128 LVDPEILVNQLKILKSINVDGVMVDCWWGIVEAH---TPQVYNWSGYRRLFQIVRELELKLQVVMSFHECG 195 (402)
Q Consensus 128 ~~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~---~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsFHqCG 195 (402)
+.+++.+++.++.+++.|++.|-+-.=++..-+. ....++-..++++++.+++.|+++ ..|.++
T Consensus 116 ~~~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v----~~H~~~ 182 (342)
T cd01299 116 VDGVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEEELRAIVDEAHKAGLYV----AAHAYG 182 (342)
T ss_pred ecCHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHHHHHHHHHHHHHcCCEE----EEEeCC
Confidence 3568899999999999999999765433221110 112577788999999999999988 557553
No 124
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=61.45 E-value=24 Score=38.12 Aligned_cols=65 Identities=14% Similarity=0.289 Sum_probs=46.5
Q ss_pred cChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceec-------------chHHHHHHHHHHHcCCeEEEEEeeeccC
Q 015723 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYN-------------WSGYRRLFQIVRELELKLQVVMSFHECG 195 (402)
Q Consensus 129 ~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Yd-------------ws~Y~~l~~mvr~~GLKv~vvmsFHqCG 195 (402)
-+-+.+.+.|..||++||++|-+.-.+-. +.....|+ .+.++++++.++++||||++=+-+--|+
T Consensus 30 Gdl~gi~~~ldyl~~lGv~~i~l~P~~~~--~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V~NH~s 107 (551)
T PRK10933 30 GDLRGVTQRLDYLQKLGVDAIWLTPFYVS--PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMVFNHTS 107 (551)
T ss_pred cCHHHHHHhhHHHHhCCCCEEEECCCCCC--CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCcc
Confidence 36788999999999999999977554311 11112232 2468999999999999998766664443
No 125
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=61.16 E-value=36 Score=33.67 Aligned_cols=72 Identities=17% Similarity=0.108 Sum_probs=50.4
Q ss_pred cceeeCCCcccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEEEEeee
Q 015723 119 LGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFH 192 (402)
Q Consensus 119 Ld~V~~~~~~~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsFH 192 (402)
|-+|.-=|.+.+++++.+--+.||++|+..++...|==.--+.+-+-+--++|+.+.+.+++.||.+.. .+|
T Consensus 28 ~~~iaGPCsie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~~t--e~~ 99 (266)
T PRK13398 28 KIIIAGPCAVESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLPVVT--EVM 99 (266)
T ss_pred EEEEEeCCcCCCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCCEEE--eeC
Confidence 334444466789999999999999999998888866210001011111266899999999999999955 554
No 126
>PRK12677 xylose isomerase; Provisional
Probab=60.39 E-value=14 Score=38.30 Aligned_cols=51 Identities=20% Similarity=0.217 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHcCcceEEEee---e-eeeeecCCCceecchHHHHHHHHHHHcCCeEEEE
Q 015723 133 ILVNQLKILKSINVDGVMVDC---W-WGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVV 188 (402)
Q Consensus 133 ~l~~dL~~LK~aGVdgV~vdV---W-WGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vv 188 (402)
.+++-++.++++|+++|++.. + |+.-+. ..+ ...+++-+++++.||+|..+
T Consensus 32 ~~~E~v~~~a~~Gf~gVElh~~~l~p~~~~~~----~~~-~~~~~lk~~l~~~GL~v~~v 86 (384)
T PRK12677 32 DPVEAVHKLAELGAYGVTFHDDDLVPFGATDA----ERD-RIIKRFKKALDETGLVVPMV 86 (384)
T ss_pred CHHHHHHHHHHhCCCEEEecccccCCCCCChh----hhH-HHHHHHHHHHHHcCCeeEEE
Confidence 588899999999999998831 2 222211 001 24788999999999998653
No 127
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=60.00 E-value=1.4e+02 Score=30.33 Aligned_cols=85 Identities=11% Similarity=0.140 Sum_probs=61.8
Q ss_pred CcccChHHHHHHHHHHHHcCcceEEEe----eeeeeeecC-----------CCceecchHHHHHHHHHHHcCCeEEEEEe
Q 015723 126 CELVDPEILVNQLKILKSINVDGVMVD----CWWGIVEAH-----------TPQVYNWSGYRRLFQIVRELELKLQVVMS 190 (402)
Q Consensus 126 ~~~~~~~~l~~dL~~LK~aGVdgV~vd----VWWGiVE~~-----------~p~~Ydws~Y~~l~~mvr~~GLKv~vvms 190 (402)
..+.+.+.|++-|..|....+|...+- .-|-+--+. ..+.|.=+.+++|++.+++.|+.|+| -
T Consensus 12 R~f~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~~rgI~vIP--E 89 (348)
T cd06562 12 RHFLSVDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYARLRGIRVIP--E 89 (348)
T ss_pred ccCCCHHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHHHcCCEEEE--e
Confidence 456788999999999999999987753 224332110 14679999999999999999999987 3
Q ss_pred eeccCCCCCCCccccCChhhhhhhhcCCCeEeeCC
Q 015723 191 FHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDR 225 (402)
Q Consensus 191 FHqCGgNVGDt~~IpLP~WV~~~g~~~PDI~~tDr 225 (402)
|-.|.=.....+.+|++.....
T Consensus 90 -------------ID~PGH~~a~~~~~p~l~~~~~ 111 (348)
T cd06562 90 -------------IDTPGHTGSWGQGYPELLTGCY 111 (348)
T ss_pred -------------ccCchhhHHHHHhChhhhCCCC
Confidence 4567655555567888765543
No 128
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=59.85 E-value=16 Score=36.28 Aligned_cols=75 Identities=12% Similarity=0.078 Sum_probs=48.3
Q ss_pred HHHHHHHcCcceEEEeeeeeeeecCCCceec---chHHHHHHHHHHHc-CCeEEEEEeeeccCCCCCCCccccCChhhhh
Q 015723 137 QLKILKSINVDGVMVDCWWGIVEAHTPQVYN---WSGYRRLFQIVREL-ELKLQVVMSFHECGGNVGDDVHIPLPQWVME 212 (402)
Q Consensus 137 dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Yd---ws~Y~~l~~mvr~~-GLKv~vvmsFHqCGgNVGDt~~IpLP~WV~~ 212 (402)
-++++.++|++++.+..=|+-+ -+|.+|+ +-+++++++-+++. |-.. | .|-|||. . ++-.++.
T Consensus 185 ~~~~~~eaGad~i~i~d~~~~~--lsp~~f~ef~~p~~k~i~~~i~~~~~~~~--i--lh~cg~~----~--~~~~~~~- 251 (338)
T TIGR01464 185 YLVEQVKAGAQAVQIFDSWAGA--LSPEDFEEFVLPYLKKIIEEVKARLPNVP--V--ILFAKGA----G--HLLEELA- 251 (338)
T ss_pred HHHHHHHcCCCEEEEECCcccc--CCHHHHHHHHHHHHHHHHHHHHHhCCCCC--E--EEEeCCc----H--HHHHHHH-
Confidence 3444667999999865546643 3577777 99999999999987 3222 2 3557752 2 3444555
Q ss_pred hhhcCCCeEeeCCC
Q 015723 213 IGQNNPEIYFTDRE 226 (402)
Q Consensus 213 ~g~~~PDI~~tDr~ 226 (402)
+...|++-.|..
T Consensus 252 --~~~~~~~s~d~~ 263 (338)
T TIGR01464 252 --ETGADVVGLDWT 263 (338)
T ss_pred --hcCCCEEEeCCC
Confidence 334577777764
No 129
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=59.14 E-value=16 Score=35.85 Aligned_cols=44 Identities=16% Similarity=0.221 Sum_probs=38.4
Q ss_pred HHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHH----HHHcCCeEEEEEe
Q 015723 137 QLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQI----VRELELKLQVVMS 190 (402)
Q Consensus 137 dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~m----vr~~GLKv~vvms 190 (402)
...+||++|++.|.|+ +++++=.|..=++++.. +.++||+.++ |
T Consensus 78 S~~mLkd~G~~~viiG--------HSERR~~f~Etd~~v~~K~~~a~~~gl~pIv--C 125 (250)
T PRK00042 78 SAEMLKDLGVKYVIIG--------HSERRQYFGETDELVNKKVKAALKAGLTPIL--C 125 (250)
T ss_pred CHHHHHHCCCCEEEeC--------cccccCccCcCHHHHHHHHHHHHHCCCEEEE--E
Confidence 4678999999999998 57888888888999988 9999999965 7
No 130
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=58.21 E-value=17 Score=36.33 Aligned_cols=76 Identities=12% Similarity=0.123 Sum_probs=49.9
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeecCCCceec---chHHHHHHHHHHHcC--CeEEEEEeeeccCCCCCCCccccCChh
Q 015723 135 VNQLKILKSINVDGVMVDCWWGIVEAHTPQVYN---WSGYRRLFQIVRELE--LKLQVVMSFHECGGNVGDDVHIPLPQW 209 (402)
Q Consensus 135 ~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Yd---ws~Y~~l~~mvr~~G--LKv~vvmsFHqCGgNVGDt~~IpLP~W 209 (402)
.+-++++.++|+++|.+..=|+.+ -+|.+|+ +-+.+++++.+++.| .++ .|-|||. . ++-.+
T Consensus 189 ~~~~~~~~eaGad~i~i~d~~~~~--lsp~~f~ef~~P~~k~i~~~i~~~~~~~~i-----lh~cg~~----~--~~~~~ 255 (346)
T PRK00115 189 IAYLNAQIEAGAQAVQIFDSWAGA--LSPADYREFVLPYMKRIVAELKREHPDVPV-----ILFGKGA----G--ELLEA 255 (346)
T ss_pred HHHHHHHHHcCCCEEEEecCcccc--CCHHHHHHHHHHHHHHHHHHHHHhCCCCCE-----EEEcCCc----H--HHHHH
Confidence 334556677999999865546654 3577777 999999999999985 332 3668753 2 22334
Q ss_pred hhhhhhcCCCeEeeCCC
Q 015723 210 VMEIGQNNPEIYFTDRE 226 (402)
Q Consensus 210 V~~~g~~~PDI~~tDr~ 226 (402)
+. +...|++-.|..
T Consensus 256 ~~---~~~~~~is~d~~ 269 (346)
T PRK00115 256 MA---ETGADVVGLDWT 269 (346)
T ss_pred HH---hcCCCEEeeCCC
Confidence 55 344577766654
No 131
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=58.07 E-value=8.5 Score=38.59 Aligned_cols=57 Identities=12% Similarity=0.168 Sum_probs=39.5
Q ss_pred HHHHHHHHHHcCcceEEE---eee-eeeeecCCCceecchHHHHHHHHHHHcCCeEEEEEe
Q 015723 134 LVNQLKILKSINVDGVMV---DCW-WGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMS 190 (402)
Q Consensus 134 l~~dL~~LK~aGVdgV~v---dVW-WGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvms 190 (402)
.++.|++||+||++.+.. +.+ -.+...-.|++-.+....+.+++++++||++...|=
T Consensus 140 ~~e~l~~LkeAGl~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi~v~s~~i 200 (343)
T TIGR03551 140 VEEALKRLKEAGLDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTATIM 200 (343)
T ss_pred HHHHHHHHHHhCcccccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcccceEE
Confidence 368899999999998751 122 112222245556677779999999999999966443
No 132
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=58.07 E-value=65 Score=30.96 Aligned_cols=72 Identities=14% Similarity=0.198 Sum_probs=49.7
Q ss_pred cChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCc--cccC
Q 015723 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDV--HIPL 206 (402)
Q Consensus 129 ~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsFHqCGgNVGDt~--~IpL 206 (402)
.+...+.+.|+...+.|++.|.+. ||.-.+ ......-+.++++++.+.+.|+-+++ + .||-|... +++.
T Consensus 86 ~~~~~i~~Ai~~Ai~~gadIIn~S--~g~~~~-~~~~~~~~~l~~ai~~A~~~Gilvva--a----AGN~g~~~~~~~~~ 156 (247)
T cd07491 86 ITPQSAAKAIEAAVEKKVDIISMS--WTIKKP-EDNDNDINELENAIKEALDRGILLFC--S----ASDQGAFTGDTYPP 156 (247)
T ss_pred cCHHHHHHHHHHHHHCCCcEEEee--eecccc-cccccchHHHHHHHHHHHhCCeEEEE--e----cCCCCCcCCCcccC
Confidence 467789999999999999988877 665332 12222457889999999999866644 5 46666544 4555
Q ss_pred Chh
Q 015723 207 PQW 209 (402)
Q Consensus 207 P~W 209 (402)
|.+
T Consensus 157 pa~ 159 (247)
T cd07491 157 PAA 159 (247)
T ss_pred ccc
Confidence 654
No 133
>PRK04326 methionine synthase; Provisional
Probab=57.77 E-value=21 Score=35.34 Aligned_cols=78 Identities=10% Similarity=0.093 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHcCcceEEEeee-eeeeecCCCceecchHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCccccCChhh
Q 015723 132 EILVNQLKILKSINVDGVMVDCW-WGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWV 210 (402)
Q Consensus 132 ~~l~~dL~~LK~aGVdgV~vdVW-WGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsFHqCGgNVGDt~~IpLP~WV 210 (402)
+.+.+.++.|+++|++.|.+|+= |... +. ++..+.+.++.+-+ +++..+ ..|-|.||.. |.|
T Consensus 161 ~~~~~~i~~l~~~G~~~iqidEP~l~~~----~~--~~~~~~~~l~~~~~-~~~~~v--~lH~C~G~~~-------~~~- 223 (330)
T PRK04326 161 KVINEEIKNLVEAGAKYIQIDEPALATH----PE--DVEIAVEALNRIVK-GINAKL--GLHVCYGDYS-------RIA- 223 (330)
T ss_pred HHHHHHHHHHHHCCCCEEEecCchhhcC----HH--HHHHHHHHHHHHHh-CCCCEE--EEEEeCCCcH-------HHH-
Confidence 46778889999999999999985 6641 22 34555555555544 445433 6799988742 112
Q ss_pred hhhhhcCCCeEeeCCC
Q 015723 211 MEIGQNNPEIYFTDRE 226 (402)
Q Consensus 211 ~~~g~~~PDI~~tDr~ 226 (402)
....+..-|.+..|-.
T Consensus 224 ~~l~~~~vd~i~~d~~ 239 (330)
T PRK04326 224 PYILEFPVDQFDLEFA 239 (330)
T ss_pred HHHHhCCCCEEEEEeC
Confidence 1122556677776664
No 134
>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase. This model describes the cobalamin-independent methionine synthase. A family of uncharacterized archaeal proteins is homologous to the C-terminal region of this family. That family is excluded from this model but, along with this family, belongs to pfam model pfam01717.
Probab=57.38 E-value=54 Score=37.05 Aligned_cols=121 Identities=11% Similarity=0.085 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHcCcceEEEeee-eeeeecCCCceecchHHH-HHHHHHHHc--CCe--EEEEEeeeccCCCCCCCcccc
Q 015723 132 EILVNQLKILKSINVDGVMVDCW-WGIVEAHTPQVYNWSGYR-RLFQIVREL--ELK--LQVVMSFHECGGNVGDDVHIP 205 (402)
Q Consensus 132 ~~l~~dL~~LK~aGVdgV~vdVW-WGiVE~~~p~~Ydws~Y~-~l~~mvr~~--GLK--v~vvmsFHqCGgNVGDt~~Ip 205 (402)
.++++.++.|.++|+..|-||+= |..--+ -..=+|..|. ...+.++.+ |++ +++ .+|-|-||.+|-
T Consensus 575 ~a~~~ev~~L~~aG~~~IQIDEPaL~~~l~--~~~~~~~~~l~~a~~~~~~~~~~v~~~~~I--~~H~C~g~~~~i---- 646 (750)
T TIGR01371 575 LAIRDEVLDLEEAGIKIIQIDEPALREGLP--LRKSDWPEYLDWAVEAFRLATSGVKDETQI--HTHMCYSEFNEI---- 646 (750)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCchhhhcCC--ccchhHHHHHHHHHHHHHHHHhCCCCCCEE--EEEEECCCcHHH----
Confidence 36677889999999999999987 742222 1222555543 334444442 553 444 889999987631
Q ss_pred CChhhhhhhhcCCCeEeeCCCCCccccceeccc-----Cc--cc-ccCCCCc-hHHHHHHHHHHHHHHh
Q 015723 206 LPQWVMEIGQNNPEIYFTDREGRRNSECLTWGI-----DK--ER-VLRGRTA-VEVYFDYMRSFRVEFN 265 (402)
Q Consensus 206 LP~WV~~~g~~~PDI~~tDr~G~rn~E~LSl~~-----D~--~p-vl~GRtp-~~~Y~dfm~sF~~~fa 265 (402)
+ .++. +.+-|.+..|-... +.|-|.... ++ .+ |.++|+| ++-..+..+.+++...
T Consensus 647 ~-~~l~---~l~vD~i~lE~~r~-~~e~L~~~~~~~~~~~~ig~GVvD~~s~~ve~~eei~~~i~~a~~ 710 (750)
T TIGR01371 647 I-ESIA---DLDADVISIEASRS-DMELLSAFKNGFGYPNGIGPGVYDIHSPRVPSVEEMADLIEKALQ 710 (750)
T ss_pred H-HHHH---hCCCCEEEEEecCC-ChhHHHHhhhhcccCCeEEEEEEeCCCCCcCCHHHHHHHHHHHHH
Confidence 1 2233 55667666653311 122332111 11 11 4688888 5555554444444433
No 135
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=57.29 E-value=1.2e+02 Score=30.35 Aligned_cols=83 Identities=14% Similarity=0.340 Sum_probs=55.8
Q ss_pred ccChHHHHHHHHHHHHcC--cceEEEeeeeeeeecCCCceecch-----HHHHHHHHHHHcCCeEEEEEeeeccCCCCCC
Q 015723 128 LVDPEILVNQLKILKSIN--VDGVMVDCWWGIVEAHTPQVYNWS-----GYRRLFQIVRELELKLQVVMSFHECGGNVGD 200 (402)
Q Consensus 128 ~~~~~~l~~dL~~LK~aG--VdgV~vdVWWGiVE~~~p~~Ydws-----~Y~~l~~mvr~~GLKv~vvmsFHqCGgNVGD 200 (402)
..+.+.+.+-++.+++.+ +|.|.+|.=|. . +-+.|+|. --+++++.+++.|+|+++++-
T Consensus 20 y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~--~--~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~---------- 85 (317)
T cd06600 20 YYPQDKVVEVVDIMQKEGFPYDVVFLDIHYM--D--SYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVD---------- 85 (317)
T ss_pred CCCHHHHHHHHHHHHHcCCCcceEEEChhhh--C--CCCceeechhcCCCHHHHHHHHHHCCCEEEEEee----------
Confidence 356788899999999876 58888886552 1 23455554 478899999999999977554
Q ss_pred CccccC----ChhhhhhhhcCCCeEeeCCCCC
Q 015723 201 DVHIPL----PQWVMEIGQNNPEIYFTDREGR 228 (402)
Q Consensus 201 t~~IpL----P~WV~~~g~~~PDI~~tDr~G~ 228 (402)
|.|.. |.+. ++. .-+.|.++.+|.
T Consensus 86 -P~i~~~~~~~~~~--~~~-~~~~~v~~~~g~ 113 (317)
T cd06600 86 -PGIRVDQNYSPFL--SGM-DKGKFCEIESGE 113 (317)
T ss_pred -ccccCCCCChHHH--HHH-HCCEEEECCCCC
Confidence 33432 3332 222 346777777775
No 136
>PRK07094 biotin synthase; Provisional
Probab=57.25 E-value=14 Score=36.30 Aligned_cols=52 Identities=12% Similarity=0.113 Sum_probs=38.6
Q ss_pred HHHHHHHHHcCcceEEEeee---eeeeecCCCceecchHHHHHHHHHHHcCCeEEE
Q 015723 135 VNQLKILKSINVDGVMVDCW---WGIVEAHTPQVYNWSGYRRLFQIVRELELKLQV 187 (402)
Q Consensus 135 ~~dL~~LK~aGVdgV~vdVW---WGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~v 187 (402)
++.|+.||++|++.|.+++= -.+.+.-.+ ...++.+.+.++.++++|+++..
T Consensus 129 ~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~-~~s~~~~~~~i~~l~~~Gi~v~~ 183 (323)
T PRK07094 129 YEEYKAWKEAGADRYLLRHETADKELYAKLHP-GMSFENRIACLKDLKELGYEVGS 183 (323)
T ss_pred HHHHHHHHHcCCCEEEeccccCCHHHHHHhCC-CCCHHHHHHHHHHHHHcCCeecc
Confidence 57789999999999987541 122222223 57889999999999999998754
No 137
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=57.14 E-value=11 Score=37.58 Aligned_cols=52 Identities=21% Similarity=0.196 Sum_probs=37.6
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeee--cCC-CceecchHHHHHHHHHHHcCCeEEE
Q 015723 135 VNQLKILKSINVDGVMVDCWWGIVE--AHT-PQVYNWSGYRRLFQIVRELELKLQV 187 (402)
Q Consensus 135 ~~dL~~LK~aGVdgV~vdVWWGiVE--~~~-p~~Ydws~Y~~l~~mvr~~GLKv~v 187 (402)
+.+++.||+++||.|.+|.. |.=| +.- ...+.=.-|.+.+.+++++|++|++
T Consensus 100 E~~~eklk~~~vdvvsLDfv-gDn~vIk~vy~l~ksv~dyl~~l~~L~e~~irvvp 154 (275)
T COG1856 100 ESDLEKLKEELVDVVSLDFV-GDNDVIKRVYKLPKSVEDYLRSLLLLKENGIRVVP 154 (275)
T ss_pred HHHHHHHHHhcCcEEEEeec-CChHHHHHHHcCCccHHHHHHHHHHHHHcCceece
Confidence 77899999999999999976 1111 000 1112234699999999999999965
No 138
>PRK08508 biotin synthase; Provisional
Probab=56.97 E-value=1.5e+02 Score=29.10 Aligned_cols=54 Identities=15% Similarity=-0.005 Sum_probs=38.6
Q ss_pred cChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEE
Q 015723 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQV 187 (402)
Q Consensus 129 ~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~v 187 (402)
.+++.+.+..+.+++.|+..+.+-.-+- +....++.+|.++++.+++.++++.+
T Consensus 40 ~s~eeI~~~a~~a~~~g~~~~~lv~sg~-----~~~~~~~e~~~ei~~~ik~~~p~l~i 93 (279)
T PRK08508 40 KDIEQIVQEAKMAKANGALGFCLVTSGR-----GLDDKKLEYVAEAAKAVKKEVPGLHL 93 (279)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEeccC-----CCCcccHHHHHHHHHHHHhhCCCcEE
Confidence 4677888889999999998876511111 11234889999999999998766643
No 139
>PLN03231 putative alpha-galactosidase; Provisional
Probab=56.84 E-value=20 Score=37.29 Aligned_cols=64 Identities=25% Similarity=0.370 Sum_probs=43.8
Q ss_pred cChHHHHHHHH----HHHHcCcceEEEeeeeeeeec----------------CCCcee-----cch------HHHHHHHH
Q 015723 129 VDPEILVNQLK----ILKSINVDGVMVDCWWGIVEA----------------HTPQVY-----NWS------GYRRLFQI 177 (402)
Q Consensus 129 ~~~~~l~~dL~----~LK~aGVdgV~vdVWWGiVE~----------------~~p~~Y-----dws------~Y~~l~~m 177 (402)
++++.+.+..+ -||.+|-+-|.||.-|-.-++ .+-|+. .|- +.+.|++.
T Consensus 15 i~E~~i~~~Ad~v~~gL~~~GY~Yv~iDd~W~~~~~~g~~~~~~~~~~~~~~d~~G~l~pd~~rFPs~~~~~G~k~lADy 94 (357)
T PLN03231 15 ISEEQFLENAKIVSETLKPHGYEYVVIDYLWYRKLKHGWFKTSAKSPGYDLIDKWGRPLPDPKRWPSTTGGKGFAPIAAK 94 (357)
T ss_pred cCHHHHHHHHHHHHcchHHhCCEEEEECCcccccccccccccccccccccccCCCCCcccCcccCCCCccccCcHHHHHH
Confidence 35555555443 678999999999988854321 112222 232 89999999
Q ss_pred HHHcCCeEEEEEeeeccCC
Q 015723 178 VRELELKLQVVMSFHECGG 196 (402)
Q Consensus 178 vr~~GLKv~vvmsFHqCGg 196 (402)
|++.|||+ ..|.+-|
T Consensus 95 vHs~GLKf----GIY~~~G 109 (357)
T PLN03231 95 VHALGLKL----GIHVMRG 109 (357)
T ss_pred HHhCCcce----EEEecCC
Confidence 99999999 6666554
No 140
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=56.67 E-value=23 Score=33.51 Aligned_cols=42 Identities=12% Similarity=0.029 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEE
Q 015723 133 ILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQ 186 (402)
Q Consensus 133 ~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~ 186 (402)
-+++-|+.++++|.++|++. + + .. ...+++-+++++.||++.
T Consensus 16 ~l~~~l~~~a~~Gf~~VEl~---~---~---~~---~~~~~~~~~l~~~gl~~~ 57 (258)
T PRK09997 16 DFLARFEKAAQCGFRGVEFM---F---P---YD---YDIEELKQVLASNKLEHT 57 (258)
T ss_pred CHHHHHHHHHHhCCCEEEEc---C---C---CC---CCHHHHHHHHHHcCCcEE
Confidence 48889999999999999992 2 1 11 247889999999999983
No 141
>PRK05402 glycogen branching enzyme; Provisional
Probab=56.54 E-value=28 Score=38.80 Aligned_cols=59 Identities=15% Similarity=0.192 Sum_probs=41.2
Q ss_pred ccChHHHHHHH-HHHHHcCcceEEEeeeeeeeecCCCceecc-----------------hHHHHHHHHHHHcCCeEEEEE
Q 015723 128 LVDPEILVNQL-KILKSINVDGVMVDCWWGIVEAHTPQVYNW-----------------SGYRRLFQIVRELELKLQVVM 189 (402)
Q Consensus 128 ~~~~~~l~~dL-~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydw-----------------s~Y~~l~~mvr~~GLKv~vvm 189 (402)
.-+-+.+.+.| ..||++||+.|.+-=- .|- |...+| ..++++++.++++||+|++=+
T Consensus 261 ~g~~~~i~~~l~~ylk~LGv~~i~L~Pi---~e~--~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~ 335 (726)
T PRK05402 261 FLSYRELADQLIPYVKEMGFTHVELLPI---AEH--PFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILDW 335 (726)
T ss_pred ccCHHHHHHHHHHHHHHcCCCEEEECCc---ccC--CCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 33556777785 9999999999987432 121 111112 248999999999999997765
Q ss_pred ee
Q 015723 190 SF 191 (402)
Q Consensus 190 sF 191 (402)
-+
T Consensus 336 V~ 337 (726)
T PRK05402 336 VP 337 (726)
T ss_pred CC
Confidence 55
No 142
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=55.64 E-value=9.5 Score=37.91 Aligned_cols=53 Identities=13% Similarity=0.142 Sum_probs=37.9
Q ss_pred HHHHHHHHHcCcceEEEe---ee-eeeeecCCCceecchHHHHHHHHHHHcCCeEEE
Q 015723 135 VNQLKILKSINVDGVMVD---CW-WGIVEAHTPQVYNWSGYRRLFQIVRELELKLQV 187 (402)
Q Consensus 135 ~~dL~~LK~aGVdgV~vd---VW-WGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~v 187 (402)
++.|+.||+||++.+.-. +. .-+.+.-.|++..+..|.+.++.++++||++..
T Consensus 143 ~e~l~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~ 199 (340)
T TIGR03699 143 REVLERLKEAGLDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTA 199 (340)
T ss_pred HHHHHHHHHcCCCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccc
Confidence 789999999999866310 01 111122125667899999999999999999754
No 143
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=55.27 E-value=1.8e+02 Score=29.01 Aligned_cols=85 Identities=12% Similarity=0.202 Sum_probs=57.1
Q ss_pred cChHHHHHHHHHHHHc--CcceEEEee-eeeeeecCCCceecch-----HHHHHHHHHHHcCCeEEEEEeeeccCCCCCC
Q 015723 129 VDPEILVNQLKILKSI--NVDGVMVDC-WWGIVEAHTPQVYNWS-----GYRRLFQIVRELELKLQVVMSFHECGGNVGD 200 (402)
Q Consensus 129 ~~~~~l~~dL~~LK~a--GVdgV~vdV-WWGiVE~~~p~~Ydws-----~Y~~l~~mvr~~GLKv~vvmsFHqCGgNVGD 200 (402)
.+.+.+++-++.+++. -+|+|.+|. ||. ..+-+.|+|. --+++++.+++.|+||++++-
T Consensus 21 ~~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~---~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~---------- 87 (319)
T cd06591 21 KTQEELLDVAKEYRKRGIPLDVIVQDWFYWP---KQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIW---------- 87 (319)
T ss_pred CCHHHHHHHHHHHHHhCCCccEEEEechhhc---CCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEec----------
Confidence 5778899999999987 678999985 343 2111256555 578999999999999977443
Q ss_pred Ccccc--CChhhhhhhhcCCCeEeeCCCCCcc
Q 015723 201 DVHIP--LPQWVMEIGQNNPEIYFTDREGRRN 230 (402)
Q Consensus 201 t~~Ip--LP~WV~~~g~~~PDI~~tDr~G~rn 230 (402)
|.|. -+.+ ++++ ..+.+.++..|...
T Consensus 88 -P~v~~~~~~y--~e~~-~~g~~v~~~~g~~~ 115 (319)
T cd06591 88 -PTFGPETENY--KEMD-EKGYLIKTDRGPRV 115 (319)
T ss_pred -CCcCCCChhH--HHHH-HCCEEEEcCCCCee
Confidence 2222 2222 3343 34788888887743
No 144
>PLN02433 uroporphyrinogen decarboxylase
Probab=54.59 E-value=21 Score=35.82 Aligned_cols=74 Identities=11% Similarity=0.087 Sum_probs=50.1
Q ss_pred HHHHHHHcCcceEEEeeeeeeeecCCCceec---chHHHHHHHHHHHc--CCeEEEEEeeeccCCCCCCCccccCChhhh
Q 015723 137 QLKILKSINVDGVMVDCWWGIVEAHTPQVYN---WSGYRRLFQIVREL--ELKLQVVMSFHECGGNVGDDVHIPLPQWVM 211 (402)
Q Consensus 137 dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Yd---ws~Y~~l~~mvr~~--GLKv~vvmsFHqCGgNVGDt~~IpLP~WV~ 211 (402)
-+++..++|++.|.+..=|+-+ -+|.+|+ +-+.+++++.+++. +..+ ..|.||. + ++-.++.
T Consensus 184 ~~~~~ieaGa~~i~i~d~~~~~--lsp~~f~ef~~P~~k~i~~~i~~~~~~~~~----ilh~cG~----~---~~~~~~~ 250 (345)
T PLN02433 184 YVDYQIDAGAQVVQIFDSWAGH--LSPVDFEEFSKPYLEKIVDEVKARHPDVPL----ILYANGS----G---GLLERLA 250 (345)
T ss_pred HHHHHHHcCCCEEEEecCcccc--CCHHHHHHHHHHHHHHHHHHHHHhCCCCCE----EEEeCCC----H---HHHHHHH
Confidence 3445667999999876657754 3577777 99999999999987 4444 4488884 1 3334554
Q ss_pred hhhhcCCCeEeeCCC
Q 015723 212 EIGQNNPEIYFTDRE 226 (402)
Q Consensus 212 ~~g~~~PDI~~tDr~ 226 (402)
+...|++-.|..
T Consensus 251 ---~~~~~~i~~d~~ 262 (345)
T PLN02433 251 ---GTGVDVIGLDWT 262 (345)
T ss_pred ---hcCCCEEEcCCC
Confidence 334467766655
No 145
>PLN02960 alpha-amylase
Probab=54.59 E-value=25 Score=40.67 Aligned_cols=58 Identities=14% Similarity=0.148 Sum_probs=41.3
Q ss_pred cChHHHH-HHHHHHHHcCcceEEEeeeeeeeecCCCceecchH-----------------HHHHHHHHHHcCCeEEEEEe
Q 015723 129 VDPEILV-NQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSG-----------------YRRLFQIVRELELKLQVVMS 190 (402)
Q Consensus 129 ~~~~~l~-~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~-----------------Y~~l~~mvr~~GLKv~vvms 190 (402)
-+-+.+. +-|..||++||+.|.+- .+.|- ++..+|.+ ++++++.+.++||+|++=+-
T Consensus 413 gtf~~~~e~~LdYLk~LGvt~IeLm---Pv~e~--~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~VILDvV 487 (897)
T PLN02960 413 SSFKEFTQKVLPHVKKAGYNAIQLI---GVQEH--KDYSSVGYKVTNFFAVSSRFGTPDDFKRLVDEAHGLGLLVFLDIV 487 (897)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEC---CcccC--CCCCCCCCCcccCCCcccccCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 3456665 45999999999999874 23332 33334443 89999999999999976444
Q ss_pred e
Q 015723 191 F 191 (402)
Q Consensus 191 F 191 (402)
+
T Consensus 488 ~ 488 (897)
T PLN02960 488 H 488 (897)
T ss_pred c
Confidence 3
No 146
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=54.56 E-value=30 Score=34.20 Aligned_cols=48 Identities=6% Similarity=0.019 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEE
Q 015723 132 EILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQV 187 (402)
Q Consensus 132 ~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~v 187 (402)
..+++-|+..|++|++.|+|.. +--...-.-..+++++++++|||+.+
T Consensus 71 ~~~~~Yl~~~k~lGf~~IEiS~--------G~~~i~~~~~~rlI~~~~~~g~~v~~ 118 (237)
T TIGR03849 71 GKFDEYLNECDELGFEAVEISD--------GSMEISLEERCNLIERAKDNGFMVLS 118 (237)
T ss_pred hhHHHHHHHHHHcCCCEEEEcC--------CccCCCHHHHHHHHHHHHhCCCeEec
Confidence 5677777777777777777631 22223334556677777777777765
No 147
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=54.05 E-value=28 Score=32.39 Aligned_cols=50 Identities=16% Similarity=0.236 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEE
Q 015723 131 PEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQV 187 (402)
Q Consensus 131 ~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~v 187 (402)
...+++-|+..+++|.+||.+.. +..... +.+..+++-+.+++.||++..
T Consensus 14 ~~~l~~~l~~~~~~G~~gvEi~~-~~~~~~------~~~~~~~l~~~l~~~gl~i~~ 63 (274)
T COG1082 14 ELPLEEILRKAAELGFDGVELSP-GDLFPA------DYKELAELKELLADYGLEITS 63 (274)
T ss_pred CCCHHHHHHHHHHhCCCeEecCC-cccCCc------hhhhHHHHHHHHHHcCcEEEe
Confidence 45788999999999999999987 222222 333389999999999999944
No 148
>PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional
Probab=53.96 E-value=18 Score=40.68 Aligned_cols=82 Identities=12% Similarity=0.189 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHcCcceEEEeee-eeeeecCCCceecc----hHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCccccC
Q 015723 132 EILVNQLKILKSINVDGVMVDCW-WGIVEAHTPQVYNW----SGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPL 206 (402)
Q Consensus 132 ~~l~~dL~~LK~aGVdgV~vdVW-WGiVE~~~p~~Ydw----s~Y~~l~~mvr~~GLKv~vvmsFHqCGgNVGDt~~IpL 206 (402)
.++++.++.|.++|+..|-||+= |- |.-....-+| .++-+.++.+-+ |++--..+++|-|=||..+ | +
T Consensus 581 ~al~~Ev~~L~~aG~~~IQiDEPal~--e~~~~~~~~~~~~l~~~v~a~n~a~~-~~~~~~~i~tH~C~g~~~~---i-~ 653 (758)
T PRK05222 581 LAIRDEVLDLEAAGIKIIQIDEPALR--EGLPLRRSDWDAYLDWAVEAFRLATS-GVKDETQIHTHMCYSEFND---I-I 653 (758)
T ss_pred HHHHHHHHHHHHcCCCEEEeeCchhh--hcCcccccCHHHHHHHHHHHHHHHHc-CCCCCCEEEEEEeccChHH---H-H
Confidence 46778889999999999999998 73 3322334567 444566666664 6632223399999998765 1 3
Q ss_pred ChhhhhhhhcCCCeEeeC
Q 015723 207 PQWVMEIGQNNPEIYFTD 224 (402)
Q Consensus 207 P~WV~~~g~~~PDI~~tD 224 (402)
|.- .+-+-|.++.+
T Consensus 654 ~~i----~~l~vD~~~lE 667 (758)
T PRK05222 654 DAI----AALDADVISIE 667 (758)
T ss_pred HHH----HhCCCCEEEEE
Confidence 332 35677877766
No 149
>PLN02475 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
Probab=53.87 E-value=26 Score=39.70 Aligned_cols=82 Identities=15% Similarity=0.182 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHcCcceEEEeee-eeeeecCCCceecchHHHHHH----HHHHHcCC--eEEEEEeeeccCCCCCCCccc
Q 015723 132 EILVNQLKILKSINVDGVMVDCW-WGIVEAHTPQVYNWSGYRRLF----QIVRELEL--KLQVVMSFHECGGNVGDDVHI 204 (402)
Q Consensus 132 ~~l~~dL~~LK~aGVdgV~vdVW-WGiVE~~~p~~Ydws~Y~~l~----~mvr~~GL--Kv~vvmsFHqCGgNVGDt~~I 204 (402)
.++++.++.|.++|+..|-||+= |. |...-..-+|..|.+.+ +++ ..|+ .+++ .+|-|-||..+ |
T Consensus 586 ~alr~Ev~~L~~aG~~~IQIDEPal~--e~~~~~~~~~~~~l~~av~af~~~-~~~v~~~~~I--~~H~C~gnf~~---I 657 (766)
T PLN02475 586 LAIKDEVEDLEKAGITVIQIDEAALR--EGLPLRKSEHAFYLDWAVHSFRIT-NCGVQDTTQI--HTHMCYSNFND---I 657 (766)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCcchh--hcCCcCccCHHHHHHHHHHHHHHH-HhcCCCCCEE--EEEEecCCcHH---H
Confidence 36778888999999999999997 73 32122336676665444 433 3455 4444 88999999654 1
Q ss_pred cCChhhhhhhhcCCCeEeeCCC
Q 015723 205 PLPQWVMEIGQNNPEIYFTDRE 226 (402)
Q Consensus 205 pLP~WV~~~g~~~PDI~~tDr~ 226 (402)
+| .+.+-+-|.++.|-.
T Consensus 658 -~~----~i~~l~~D~~~~E~~ 674 (766)
T PLN02475 658 -IH----SIIDMDADVITIENS 674 (766)
T ss_pred -HH----HHHhCCCCEEEEEcC
Confidence 22 123667787776643
No 150
>PRK00957 methionine synthase; Provisional
Probab=53.80 E-value=25 Score=34.51 Aligned_cols=80 Identities=16% Similarity=0.226 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHcCcceEEEeee-eeeeecCCCceecchHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCccccCChhh
Q 015723 132 EILVNQLKILKSINVDGVMVDCW-WGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWV 210 (402)
Q Consensus 132 ~~l~~dL~~LK~aGVdgV~vdVW-WGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsFHqCGgNVGDt~~IpLP~WV 210 (402)
+++.+.+++|+++|++.|.+|+= |+. +..+.+...+.++.+-+ ++++.+ ..|-||+ . -|.|
T Consensus 144 ~~~~~~i~~l~~~G~~~IqiDEP~l~~------~~~~~~~~~~~~~~~~~-~i~~~v--~lH~CG~----~----~~i~- 205 (305)
T PRK00957 144 RALRKEAEALEKAGVAMIQIDEPILST------GAYDLEVAKKAIDIITK-GLNVPV--AMHVCGD----V----SNII- 205 (305)
T ss_pred HHHHHHHHHHHHcCCCEEEecChhhhc------CCchHHHHHHHHHHHHH-hhCCce--EEEECCC----c----HHHH-
Confidence 46778888999999999999975 664 11234454555555443 334433 6799953 2 1212
Q ss_pred hhhhhcCCCeEeeCCCCCc
Q 015723 211 MEIGQNNPEIYFTDREGRR 229 (402)
Q Consensus 211 ~~~g~~~PDI~~tDr~G~r 229 (402)
-...+.+-|.+..|-.|.+
T Consensus 206 ~~l~~~~vd~i~ld~~~~~ 224 (305)
T PRK00957 206 DDLLKFNVDILDHEFASNK 224 (305)
T ss_pred HHHHhCCCCEEEEeecCCC
Confidence 1123567788888876653
No 151
>PRK08508 biotin synthase; Provisional
Probab=53.63 E-value=18 Score=35.44 Aligned_cols=66 Identities=23% Similarity=0.273 Sum_probs=45.4
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeecCCCc-------eecchHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCcc--cc
Q 015723 135 VNQLKILKSINVDGVMVDCWWGIVEAHTPQ-------VYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVH--IP 205 (402)
Q Consensus 135 ~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~-------~Ydws~Y~~l~~mvr~~GLKv~vvmsFHqCGgNVGDt~~--Ip 205 (402)
++.|++||++|++.+.++ +|. ++. .-+|....+.++.+++.||++..-|=+ | .|++.. +-
T Consensus 102 ~e~l~~Lk~aGld~~~~~-----lEt-~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~I~----G-lGEt~ed~~~ 170 (279)
T PRK08508 102 VEQLKELKKAGIFSYNHN-----LET-SKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIF----G-LGESWEDRIS 170 (279)
T ss_pred HHHHHHHHHcCCCEEccc-----ccc-hHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecceeEE----e-cCCCHHHHHH
Confidence 778999999999999886 554 331 256777778888999999988543332 2 466542 33
Q ss_pred CChhhh
Q 015723 206 LPQWVM 211 (402)
Q Consensus 206 LP~WV~ 211 (402)
+=.|+.
T Consensus 171 ~l~~lr 176 (279)
T PRK08508 171 FLKSLA 176 (279)
T ss_pred HHHHHH
Confidence 445665
No 152
>PRK08445 hypothetical protein; Provisional
Probab=53.43 E-value=16 Score=37.22 Aligned_cols=58 Identities=10% Similarity=0.180 Sum_probs=41.0
Q ss_pred HHHHHHHHHHcCcceEE---Eeee-eeeeecCCCceecchHHHHHHHHHHHcCCeEEEEEee
Q 015723 134 LVNQLKILKSINVDGVM---VDCW-WGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSF 191 (402)
Q Consensus 134 l~~dL~~LK~aGVdgV~---vdVW-WGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsF 191 (402)
.++.|++||+||++.+. +... -...+.-.|+.-.-..|.+.++.++++||++..-|=|
T Consensus 143 ~~e~L~~LkeAGl~~~~g~glE~~~d~v~~~~~pk~~t~~~~i~~i~~a~~~Gi~~~sg~i~ 204 (348)
T PRK08445 143 IKEVLERLQAKGLSSIPGAGAEILSDRVRDIIAPKKLDSDRWLEVHRQAHLIGMKSTATMMF 204 (348)
T ss_pred HHHHHHHHHHcCCCCCCCCceeeCCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCeeeeEEEe
Confidence 37899999999999543 4433 2222332355666667799999999999999775443
No 153
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=52.72 E-value=14 Score=36.50 Aligned_cols=54 Identities=13% Similarity=0.158 Sum_probs=39.1
Q ss_pred HHHHHHHHHHcCcceEE-Ee--ee-eeeeecCCCceecchHHHHHHHHHHHcCCeEEE
Q 015723 134 LVNQLKILKSINVDGVM-VD--CW-WGIVEAHTPQVYNWSGYRRLFQIVRELELKLQV 187 (402)
Q Consensus 134 l~~dL~~LK~aGVdgV~-vd--VW-WGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~v 187 (402)
.++.|++||+||++.+. +. .. -.+...-.|++..+..+.+.++.+++.||++..
T Consensus 106 ~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~~Gi~~~s 163 (309)
T TIGR00423 106 IEEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHRLGIPTTA 163 (309)
T ss_pred HHHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCcee
Confidence 47889999999999774 21 11 111122226777899999999999999999965
No 154
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=52.51 E-value=18 Score=37.40 Aligned_cols=56 Identities=20% Similarity=0.207 Sum_probs=38.5
Q ss_pred cChHHHHHHHHHHHHcCcceEEEe---ee-eeeeecCCCceecchHHHHHHHHHHHcCCeEEEEE
Q 015723 129 VDPEILVNQLKILKSINVDGVMVD---CW-WGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVM 189 (402)
Q Consensus 129 ~~~~~l~~dL~~LK~aGVdgV~vd---VW-WGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvm 189 (402)
.++-.+...+++++++|+++|++. +| |+.-+. +. + .-.+++-++++++||++..|.
T Consensus 29 ~~~~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~--e~--~-~~~~~lk~~L~~~GL~v~~v~ 88 (382)
T TIGR02631 29 RTALDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQ--ER--D-QIVRRFKKALDETGLKVPMVT 88 (382)
T ss_pred CCCcCHHHHHHHHHHhCCCEEEecccccCCCCCChh--HH--H-HHHHHHHHHHHHhCCeEEEee
Confidence 345577889999999999999864 12 333221 11 1 226789999999999986543
No 155
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=52.24 E-value=27 Score=40.77 Aligned_cols=47 Identities=15% Similarity=0.239 Sum_probs=37.3
Q ss_pred ccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEEE
Q 015723 128 LVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVV 188 (402)
Q Consensus 128 ~~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vv 188 (402)
..+++.+++||+.||++|+|.|++. ...+. .+..++|-+.||-|+.=
T Consensus 367 a~t~e~~~~di~lmK~~g~NaVR~s---HyP~~-----------p~fydlcDe~GilV~dE 413 (1027)
T PRK09525 367 VMDEETMVQDILLMKQHNFNAVRCS---HYPNH-----------PLWYELCDRYGLYVVDE 413 (1027)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEec---CCCCC-----------HHHHHHHHHcCCEEEEe
Confidence 4688999999999999999999992 22221 35679999999988753
No 156
>COG0620 MetE Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism]
Probab=52.19 E-value=33 Score=35.11 Aligned_cols=64 Identities=14% Similarity=0.091 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHcCcceEEEeee-eeeeecCCCceecchHHHHH----HH-HHHHcCCeEEEEEeeeccCCCCCCC
Q 015723 132 EILVNQLKILKSINVDGVMVDCW-WGIVEAHTPQVYNWSGYRRL----FQ-IVRELELKLQVVMSFHECGGNVGDD 201 (402)
Q Consensus 132 ~~l~~dL~~LK~aGVdgV~vdVW-WGiVE~~~p~~Ydws~Y~~l----~~-mvr~~GLKv~vvmsFHqCGgNVGDt 201 (402)
.++++.++.|+.+||..|-+|+= |+.-.+... |..|.+. ++ .++..|-++++ ++|-|.|+..++
T Consensus 158 ~al~~ev~~l~~agi~~iQiDEpal~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~d~~i--~~HiCy~e~~~~ 227 (330)
T COG0620 158 LALRDEVKDLEDAGIKIIQIDEPALREGLPLRR----DDDYLEWAVEAINLAAAGVGADTQI--HLHICYSEFNDI 227 (330)
T ss_pred HHHHHHHHHHHHcCCCEEeechhhhhcCCcccc----chHHHHHHHHHHHHHHhcCCCCcEE--EEEEECCcccch
Confidence 46677788999999999999994 887766333 2333332 22 23345677777 899999976655
No 157
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=51.52 E-value=53 Score=33.93 Aligned_cols=110 Identities=18% Similarity=0.124 Sum_probs=69.1
Q ss_pred cEEEeeccceeeCCCcccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEEEEee
Q 015723 112 PVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSF 191 (402)
Q Consensus 112 pvyVMlPLd~V~~~~~~~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsF 191 (402)
|+++-.| |.+.+.+.+..--+.||++||..+.-..|==.--|.+-+-..+.+|+.+.+.+++.||.+.. ..
T Consensus 119 ~~~iaGp-------c~iE~~~~~~~~A~~lk~~g~~~~r~~~~kpRtsp~~f~g~~~e~l~~L~~~~~~~Gl~~~t--~v 189 (360)
T PRK12595 119 QSFIFGP-------CSVESYEQVEAVAKALKAKGLKLLRGGAFKPRTSPYDFQGLGVEGLKILKQVADEYGLAVIS--EI 189 (360)
T ss_pred eeeEEec-------ccccCHHHHHHHHHHHHHcCCcEEEccccCCCCCCccccCCCHHHHHHHHHHHHHcCCCEEE--ee
Confidence 5555556 66678999999999999999999997666311111122334568999999999999999955 53
Q ss_pred eccCCCCCCCccccCChhhhhhhhcCCCeEeeCCCCCcccccee-cccCccccc
Q 015723 192 HECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRRNSECLT-WGIDKERVL 244 (402)
Q Consensus 192 HqCGgNVGDt~~IpLP~WV~~~g~~~PDI~~tDr~G~rn~E~LS-l~~D~~pvl 244 (402)
| -+.-+-.. .+..|++-.=-.=-+|.+.|. .+--..||+
T Consensus 190 ~-------------d~~~~~~l-~~~vd~lkI~s~~~~n~~LL~~~a~~gkPVi 229 (360)
T PRK12595 190 V-------------NPADVEVA-LDYVDVIQIGARNMQNFELLKAAGRVNKPVL 229 (360)
T ss_pred C-------------CHHHHHHH-HHhCCeEEECcccccCHHHHHHHHccCCcEE
Confidence 3 11112211 223676655444444555554 344455664
No 158
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=51.09 E-value=16 Score=36.95 Aligned_cols=56 Identities=18% Similarity=0.234 Sum_probs=39.5
Q ss_pred HHHHHHHHHHcCcceEE---Eeee-eeeeecCCCceecchHHHHHHHHHHHcCCeEEEEE
Q 015723 134 LVNQLKILKSINVDGVM---VDCW-WGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVM 189 (402)
Q Consensus 134 l~~dL~~LK~aGVdgV~---vdVW-WGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvm 189 (402)
.++.|++||+||++.+- +... --+.+.-.+++..+.-+.+.++.++++||++-.-|
T Consensus 149 ~~e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a~~~Gi~~~sg~ 208 (351)
T TIGR03700 149 TEEVLDELKEAGLDSMPGGGAEIFAEEVRQQICPEKISAERWLEIHRTAHELGLKTNATM 208 (351)
T ss_pred HHHHHHHHHHcCCCcCCCCcccccCHHHHhhcCCCCCCHHHHHHHHHHHHHcCCCcceEE
Confidence 46679999999998765 1121 22222223667778888999999999999985533
No 159
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=50.86 E-value=24 Score=34.90 Aligned_cols=67 Identities=16% Similarity=0.039 Sum_probs=44.1
Q ss_pred CCCccEEEeeccceeeCCCcccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEE
Q 015723 108 TPYVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQV 187 (402)
Q Consensus 108 ~~~vpvyVMlPLd~V~~~~~~~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~v 187 (402)
..+|++|-+-.|--+. .-++.+++-|+.+|++|++.|+|.. +--.-.=.-..++++++++.|+||.+
T Consensus 65 ~~gV~v~~GGtl~E~a-----~~q~~~~~yl~~~k~lGf~~IEiSd--------Gti~l~~~~r~~~I~~~~~~Gf~v~~ 131 (244)
T PF02679_consen 65 SHGVYVYPGGTLFEVA-----YQQGKFDEYLEECKELGFDAIEISD--------GTIDLPEEERLRLIRKAKEEGFKVLS 131 (244)
T ss_dssp CTT-EEEE-HHHHHHH-----HHTT-HHHHHHHHHHCT-SEEEE----------SSS---HHHHHHHHHHHCCTTSEEEE
T ss_pred HcCCeEeCCcHHHHHH-----HhcChHHHHHHHHHHcCCCEEEecC--------CceeCCHHHHHHHHHHHHHCCCEEee
Confidence 3567777666665442 2367899999999999999999853 22233445677899999999999977
No 160
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=50.74 E-value=16 Score=25.39 Aligned_cols=18 Identities=33% Similarity=0.553 Sum_probs=14.0
Q ss_pred HHHHHHHHHcCcceEEEe
Q 015723 135 VNQLKILKSINVDGVMVD 152 (402)
Q Consensus 135 ~~dL~~LK~aGVdgV~vd 152 (402)
.+..+.|-.+||||||.|
T Consensus 10 ~~~~~~~l~~GVDgI~Td 27 (30)
T PF13653_consen 10 PASWRELLDLGVDGIMTD 27 (30)
T ss_dssp HHHHHHHHHHT-SEEEES
T ss_pred HHHHHHHHHcCCCEeeCC
Confidence 456688889999999987
No 161
>PF01717 Meth_synt_2: Cobalamin-independent synthase, Catalytic domain; InterPro: IPR002629 This is a domain of vitamin-B12 independent methionine synthases or 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferases, 2.1.1.14 from EC from bacteria and plants. Plants are the only higher eukaryotes that have the required enzymes for methionine synthesis []. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to homocysteine []. The aligned region makes up the carboxy region of the approximately 750 amino acid protein except in some hypothetical archaeal proteins present in the family, where this region corresponds to the entire length.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0009086 methionine biosynthetic process; PDB: 1U22_A 1U1H_A 1U1U_A 1U1J_A 3BQ5_A 3BQ6_A 1XDJ_B 1XR2_B 1T7L_B 1XPG_B ....
Probab=50.61 E-value=27 Score=34.45 Aligned_cols=86 Identities=15% Similarity=0.156 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeeeeecCCCce------ecchHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCcccc
Q 015723 132 EILVNQLKILKSINVDGVMVDCWWGIVEAHTPQV------YNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIP 205 (402)
Q Consensus 132 ~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~------Ydws~Y~~l~~mvr~~GLKv~vvmsFHqCGgNVGDt~~Ip 205 (402)
+++.+++++|..+|+..|-+|+= .+.+.-.... .+|.-..+.++.+- .+..+.+ ++|-|+||..+..
T Consensus 154 ~a~~~ei~~l~~~G~~~iQiDeP-~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~v--~~H~C~~~~~~~~--- 226 (324)
T PF01717_consen 154 EAYREEIRALYDAGCRYIQIDEP-ALSEGPPDASFDRDEYLDEAVAAEALNRAV-KGEDATV--GVHVCRGNYPSIL--- 226 (324)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEET-CHHCTSCSSHHHHHHHHHHHHHHHHHHHTT-STTTSEE--EEEESSSCHCTTH---
T ss_pred HHHHHHHHHHHHCCCCEEEecch-HhhcchhhhcccHHHHHHHHHHHHHHHhcc-CCCCCEE--EEEecCccchhhH---
Confidence 57788899999999999999987 2222211111 12332333333221 2444433 9999999853221
Q ss_pred CChhhhhhhhcCCCeEeeCCCCCc
Q 015723 206 LPQWVMEIGQNNPEIYFTDREGRR 229 (402)
Q Consensus 206 LP~WV~~~g~~~PDI~~tDr~G~r 229 (402)
....+.+-|.++.+-...+
T Consensus 227 -----~~l~~~~vd~~~lE~~~~~ 245 (324)
T PF01717_consen 227 -----PLLADLNVDAFFLEFADRR 245 (324)
T ss_dssp -----HHHHCSS-SEEEEEETSST
T ss_pred -----HHHhhcccceEEeecccCC
Confidence 2233567787776666555
No 162
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=50.13 E-value=90 Score=31.64 Aligned_cols=63 Identities=10% Similarity=0.229 Sum_probs=41.8
Q ss_pred ccChHHHHHHHHHHHHcCc--ceEEEeee--------eee---eecCC--C---ceecc------hHHHHHHHHHHHcCC
Q 015723 128 LVDPEILVNQLKILKSINV--DGVMVDCW--------WGI---VEAHT--P---QVYNW------SGYRRLFQIVRELEL 183 (402)
Q Consensus 128 ~~~~~~l~~dL~~LK~aGV--dgV~vdVW--------WGi---VE~~~--p---~~Ydw------s~Y~~l~~mvr~~GL 183 (402)
..+.+.+++-++.+++.|| ++|.+|.| |.. ++..+ + +.++| --.+++++.+++.|+
T Consensus 20 Y~~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPdp~~mi~~Lh~~G~ 99 (340)
T cd06597 20 WDTQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPNPKGMIDELHEQGV 99 (340)
T ss_pred CCCHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCCCHHHHHHHHHHCCC
Confidence 4577889999999999885 88888842 111 11111 1 12222 347899999999999
Q ss_pred eEEEEEe
Q 015723 184 KLQVVMS 190 (402)
Q Consensus 184 Kv~vvms 190 (402)
|+.+++.
T Consensus 100 kv~l~v~ 106 (340)
T cd06597 100 KVLLWQI 106 (340)
T ss_pred EEEEEec
Confidence 9966443
No 163
>PRK06256 biotin synthase; Validated
Probab=49.99 E-value=25 Score=34.81 Aligned_cols=47 Identities=15% Similarity=0.143 Sum_probs=35.8
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeecCCCc-------eecchHHHHHHHHHHHcCCeEEE
Q 015723 135 VNQLKILKSINVDGVMVDCWWGIVEAHTPQ-------VYNWSGYRRLFQIVRELELKLQV 187 (402)
Q Consensus 135 ~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~-------~Ydws~Y~~l~~mvr~~GLKv~v 187 (402)
++.++.||++|++.|.++ +|. .+. ..+|..+.+.++.++++||++..
T Consensus 152 ~e~l~~LkeaG~~~v~~~-----lEt-s~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~ 205 (336)
T PRK06256 152 EEQAERLKEAGVDRYNHN-----LET-SRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCS 205 (336)
T ss_pred HHHHHHHHHhCCCEEecC-----Ccc-CHHHHhhcCCCCCHHHHHHHHHHHHHcCCeecc
Confidence 456788999999999775 343 222 24788888999999999998754
No 164
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=49.78 E-value=1.4e+02 Score=27.92 Aligned_cols=54 Identities=11% Similarity=0.063 Sum_probs=40.7
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeec------CCCceecchHHHHHHHHHHHcCCeEEEEEe
Q 015723 135 VNQLKILKSINVDGVMVDCWWGIVEA------HTPQVYNWSGYRRLFQIVRELELKLQVVMS 190 (402)
Q Consensus 135 ~~dL~~LK~aGVdgV~vdVWWGiVE~------~~p~~Ydws~Y~~l~~mvr~~GLKv~vvms 190 (402)
+.+++.++++|++.|.+-.--. +. .....-+++...+.++.+++.|+++.+.+.
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s--~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~ 136 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSAS--ETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLE 136 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecC--HHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 7789999999999999887522 10 012223677888999999999999988763
No 165
>PRK09505 malS alpha-amylase; Reviewed
Probab=49.70 E-value=40 Score=37.79 Aligned_cols=62 Identities=13% Similarity=0.191 Sum_probs=42.7
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeeeeeeeec----C--------CCcee-------------cchHHHHHHHHHHHcCCe
Q 015723 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEA----H--------TPQVY-------------NWSGYRRLFQIVRELELK 184 (402)
Q Consensus 130 ~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~----~--------~p~~Y-------------dws~Y~~l~~mvr~~GLK 184 (402)
|-+.+.+-|..||++||++|-+.--.--+.. . +.-.| ....++++++.+++.|||
T Consensus 228 dl~Gi~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~ 307 (683)
T PRK09505 228 DLRGLTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIR 307 (683)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCE
Confidence 4677999999999999999987532111100 0 00011 245799999999999999
Q ss_pred EEEEEee
Q 015723 185 LQVVMSF 191 (402)
Q Consensus 185 v~vvmsF 191 (402)
|++=+-+
T Consensus 308 VilD~V~ 314 (683)
T PRK09505 308 ILFDVVM 314 (683)
T ss_pred EEEEECc
Confidence 9876555
No 166
>PRK13655 phosphoenolpyruvate carboxylase; Provisional
Probab=49.56 E-value=55 Score=35.65 Aligned_cols=56 Identities=16% Similarity=0.168 Sum_probs=38.9
Q ss_pred cchHHH---HHHHHHHHcCCeEEEEEeeeccCCCCCCCccccCC-hhhhhhhhcCCCeEeeCCCCC
Q 015723 167 NWSGYR---RLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLP-QWVMEIGQNNPEIYFTDREGR 228 (402)
Q Consensus 167 dws~Y~---~l~~mvr~~GLKv~vvmsFHqCGgNVGDt~~IpLP-~WV~~~g~~~PDI~~tDr~G~ 228 (402)
.|+-|+ +|.++++++|+++.+ ||.+||.||-- -.| ..+..+-..+|..+...++|.
T Consensus 216 ~w~l~~A~~~L~~~~~~~gv~i~~---fhGrGg~~~RG---Ggpp~~~~ail~q~~g~~r~TeQga 275 (494)
T PRK13655 216 VLSVKYALSRLYELEEELGVEIYP---ILGVGSLPFRG---HLSPENLENVLEEYPGVYTFTVQSA 275 (494)
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEE---eccCCCCCCCC---CCChHHHHHHHhCCCCCeEEEeccc
Confidence 566554 677788999999988 99999998854 233 223333366788777777774
No 167
>PRK09936 hypothetical protein; Provisional
Probab=49.12 E-value=37 Score=34.70 Aligned_cols=52 Identities=17% Similarity=0.245 Sum_probs=41.2
Q ss_pred cChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecch----HHHHHHHHHHHcCCeEEE
Q 015723 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWS----GYRRLFQIVRELELKLQV 187 (402)
Q Consensus 129 ~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws----~Y~~l~~mvr~~GLKv~v 187 (402)
..++.|+.-++++|..|++.+.|- |... +++ ||. ++.++++.++++||||++
T Consensus 35 ~~~~qWq~~~~~~~~~G~~tLivQ--Wt~y-G~~----~fg~~~g~La~~l~~A~~~Gl~v~v 90 (296)
T PRK09936 35 VTDTQWQGLWSQLRLQGFDTLVVQ--WTRY-GDA----DFGGQRGWLAKRLAAAQQAGLKLVV 90 (296)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEE--eeec-cCC----CcccchHHHHHHHHHHHHcCCEEEE
Confidence 467899999999999999999875 3333 111 443 678899999999999977
No 168
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=49.02 E-value=62 Score=33.09 Aligned_cols=135 Identities=11% Similarity=0.050 Sum_probs=75.2
Q ss_pred HHHHHHHHHHcCcceEEEeee--eeeeec--CCCceecchHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCccccCChh
Q 015723 134 LVNQLKILKSINVDGVMVDCW--WGIVEA--HTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQW 209 (402)
Q Consensus 134 l~~dL~~LK~aGVdgV~vdVW--WGiVE~--~~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsFHqCGgNVGDt~~IpLP~W 209 (402)
..+++++++++|++.|.+-+- -..+|. .......+.-..+.++.+++.|+++.+.+. +.+..-|..
T Consensus 73 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~e----------da~r~~~~~ 142 (363)
T TIGR02090 73 LKKDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAE----------DATRTDIDF 142 (363)
T ss_pred CHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEe----------ecCCCCHHH
Confidence 467899999999999887443 222221 112334567788999999999999976433 223345777
Q ss_pred hhhhhh----cCC-CeEeeCCCCCcccccee----cccCc--ccccCCCCchHHHHHHHHHHHHHHhhhhcCceEEEEEe
Q 015723 210 VMEIGQ----NNP-EIYFTDREGRRNSECLT----WGIDK--ERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEV 278 (402)
Q Consensus 210 V~~~g~----~~P-DI~~tDr~G~rn~E~LS----l~~D~--~pvl~GRtp~~~Y~dfm~sF~~~fa~~~~~~vI~eI~V 278 (402)
+.+..+ .-+ .|.+.|-.|.-.++-+. .-.+. +|+ -..+--|+--+.+..++.... | +.-|..
T Consensus 143 l~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~li~~l~~~~~~~l-----~~H~Hnd~GlA~AN~laA~~a-G-a~~vd~ 215 (363)
T TIGR02090 143 LIKVFKRAEEAGADRINIADTVGVLTPQKMEELIKKLKENVKLPI-----SVHCHNDFGLATANSIAGVKA-G-AEQVHV 215 (363)
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHhcccCceE-----EEEecCCCChHHHHHHHHHHC-C-CCEEEE
Confidence 776422 112 36667777765442221 11111 111 011222333344444544433 3 467888
Q ss_pred eccCCCc
Q 015723 279 GLGPCGE 285 (402)
Q Consensus 279 GlGP~GE 285 (402)
.+++-||
T Consensus 216 s~~GlGe 222 (363)
T TIGR02090 216 TVNGIGE 222 (363)
T ss_pred Eeecccc
Confidence 8888886
No 169
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=48.87 E-value=33 Score=38.67 Aligned_cols=99 Identities=19% Similarity=0.263 Sum_probs=63.0
Q ss_pred CCCCCCcccCC-CCCCccEEEeeccceeeCCCcccChHHHHHH--HHHHHHcCcceEEE-eeeeeeeecC---CCceecc
Q 015723 96 LPPKLPERDFA-GTPYVPVYVMLPLGIIDMNCELVDPEILVNQ--LKILKSINVDGVMV-DCWWGIVEAH---TPQVYNW 168 (402)
Q Consensus 96 ~~~~~~~~~~~-~~~~vpvyVMlPLd~V~~~~~~~~~~~l~~d--L~~LK~aGVdgV~v-dVWWGiVE~~---~p~~Ydw 168 (402)
|.=++|.++|+ ..+.||--.- |++ .++.+. |..||++||+.|++ +|+.-.-|+. ..-.|+|
T Consensus 173 vIYE~HVr~fT~~~~~v~~~~r---------GTy---~gl~~~~~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~W 240 (697)
T COG1523 173 VIYEAHVRDFTQLHPGVPEELR---------GTY---LGLAEPVIIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNW 240 (697)
T ss_pred EEEEeeecccccCCCCCchhhc---------cce---ehhccccHHHHHHHhCCceEEEecceEEecccccccccccccc
Confidence 34456777887 5555553211 111 233333 99999999999985 7775544442 3567777
Q ss_pred h------------------------HHHHHHHHHHHcCCeEEEEEee-eccCCCCCCCccccCC
Q 015723 169 S------------------------GYRRLFQIVRELELKLQVVMSF-HECGGNVGDDVHIPLP 207 (402)
Q Consensus 169 s------------------------~Y~~l~~mvr~~GLKv~vvmsF-HqCGgNVGDt~~IpLP 207 (402)
- .++++++-+.++||-||+=+=| |-+.||-- -++.++.
T Consensus 241 GYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDVVfNHTae~~~~-g~t~~f~ 303 (697)
T COG1523 241 GYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDVVFNHTAEGNEL-GPTLSFR 303 (697)
T ss_pred CCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEEeccCcccccCc-Ccccccc
Confidence 4 5788999999999999765444 77666521 2444443
No 170
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=48.49 E-value=38 Score=32.47 Aligned_cols=45 Identities=20% Similarity=0.368 Sum_probs=35.7
Q ss_pred HHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEEEEee
Q 015723 137 QLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSF 191 (402)
Q Consensus 137 dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsF 191 (402)
...+||++|++.|.|+ +++++|.=+--.+-++.+.++||+.++ |.
T Consensus 73 S~~mLkd~G~~~viiG--------HSERRf~Etdi~~Kv~~a~~~gl~~Iv--Ci 117 (205)
T TIGR00419 73 SAEMLKDIGAKGTLIN--------HSERRMKLADIEKKIARLKELGLTSVV--CT 117 (205)
T ss_pred CHHHHHHcCCCEEEEC--------cccCCCCccHHHHHHHHHHHCCCEEEE--EE
Confidence 4678999999999998 466666666666777788999999855 73
No 171
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=48.32 E-value=1.4e+02 Score=30.25 Aligned_cols=59 Identities=5% Similarity=0.073 Sum_probs=43.4
Q ss_pred ccChHHHHHHHHHHHHcC--cceEEEeeeeeeeecCCCceec-----chHH--HHHHHHHHHcCCeEEEEEe
Q 015723 128 LVDPEILVNQLKILKSIN--VDGVMVDCWWGIVEAHTPQVYN-----WSGY--RRLFQIVRELELKLQVVMS 190 (402)
Q Consensus 128 ~~~~~~l~~dL~~LK~aG--VdgV~vdVWWGiVE~~~p~~Yd-----ws~Y--~~l~~mvr~~GLKv~vvms 190 (402)
..+.+.+.+-++.+++.| +|+|.+|.-|.. .-+.|+ |.-- +++++.+++.|+|+++++-
T Consensus 20 y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~----~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~ 87 (339)
T cd06602 20 YKNVDEVKEVVENMRAAGIPLDVQWNDIDYMD----RRRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILD 87 (339)
T ss_pred CCCHHHHHHHHHHHHHhCCCcceEEECccccc----CccceecccccCCCccHHHHHHHHHHCCCEEEEEEe
Confidence 457788999999998866 588888866531 234454 3445 9999999999999977543
No 172
>PRK03705 glycogen debranching enzyme; Provisional
Probab=47.90 E-value=53 Score=36.59 Aligned_cols=53 Identities=13% Similarity=0.377 Sum_probs=36.6
Q ss_pred HHHHHHHcCcceEEEe-e----------------eeee-----eecCCCceecc------hHHHHHHHHHHHcCCeEEEE
Q 015723 137 QLKILKSINVDGVMVD-C----------------WWGI-----VEAHTPQVYNW------SGYRRLFQIVRELELKLQVV 188 (402)
Q Consensus 137 dL~~LK~aGVdgV~vd-V----------------WWGi-----VE~~~p~~Ydw------s~Y~~l~~mvr~~GLKv~vv 188 (402)
.|..||++||+.|.+- | .||- ..+ +..|-= ..++++++.++++||+|++=
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~--d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlD 261 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFAL--DPAYASGPETALDEFRDAVKALHKAGIEVILD 261 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCccccccccc--ccccCCCCcchHHHHHHHHHHHHHCCCEEEEE
Confidence 4899999999999762 2 2441 111 111211 36999999999999999887
Q ss_pred Eee
Q 015723 189 MSF 191 (402)
Q Consensus 189 msF 191 (402)
+-|
T Consensus 262 vV~ 264 (658)
T PRK03705 262 VVF 264 (658)
T ss_pred Ecc
Confidence 666
No 173
>PLN02784 alpha-amylase
Probab=47.84 E-value=43 Score=38.88 Aligned_cols=66 Identities=15% Similarity=0.062 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecc----------hHHHHHHHHHHHcCCeEEEEEee-eccCC
Q 015723 131 PEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNW----------SGYRRLFQIVRELELKLQVVMSF-HECGG 196 (402)
Q Consensus 131 ~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydw----------s~Y~~l~~mvr~~GLKv~vvmsF-HqCGg 196 (402)
.+.|.+.|..|+++||++|-+.--..-+.+.+=..+|+ ..++++++.++++||+|++=+-+ |-||.
T Consensus 520 ~~~I~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDiViNH~ag~ 596 (894)
T PLN02784 520 YMELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDAVLNHRCAH 596 (894)
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEECccccccc
Confidence 67999999999999999998876422222111122232 46899999999999999774444 77754
No 174
>PRK14566 triosephosphate isomerase; Provisional
Probab=47.69 E-value=32 Score=34.32 Aligned_cols=44 Identities=14% Similarity=0.169 Sum_probs=36.8
Q ss_pred HHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHH----HHHHHHHcCCeEEEEEe
Q 015723 137 QLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRR----LFQIVRELELKLQVVMS 190 (402)
Q Consensus 137 dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~----l~~mvr~~GLKv~vvms 190 (402)
.-.+||++|+++|.|+ +++++=.|..=++ -++.+.++||+.++ |
T Consensus 87 S~~mL~d~G~~~viiG--------HSERR~~f~Etd~~v~~Kv~~al~~gl~pIv--C 134 (260)
T PRK14566 87 SGQMLKDAGCRYVIIG--------HSERRRMYGETSNIVAEKFAAAQKHGLTPIL--C 134 (260)
T ss_pred CHHHHHHcCCCEEEEC--------cccccCCCCcCHHHHHHHHHHHHHCCCEEEE--E
Confidence 4578999999999998 5777778888888 67789999999955 7
No 175
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=47.51 E-value=34 Score=34.07 Aligned_cols=44 Identities=14% Similarity=0.254 Sum_probs=38.3
Q ss_pred HHHHHHHcCcceEEEeeeeeeeecCCCceecchHHH----HHHHHHHHcCCeEEEEEe
Q 015723 137 QLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYR----RLFQIVRELELKLQVVMS 190 (402)
Q Consensus 137 dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~----~l~~mvr~~GLKv~vvms 190 (402)
.-.+||++|+++|.|+ +++++-.|..=+ +-+..+.++||+.++ |
T Consensus 80 S~~mL~d~G~~~viiG--------HSERR~~~~E~d~~i~~K~~aa~~~Gl~pIl--C 127 (251)
T COG0149 80 SAEMLKDLGAKYVLIG--------HSERRLYFGETDELIAKKVKAAKEAGLTPIL--C 127 (251)
T ss_pred CHHHHHHcCCCEEEEC--------ccccccccccchHHHHHHHHHHHHCCCeEEE--E
Confidence 4578999999999998 689999999998 778889999999855 7
No 176
>PRK15108 biotin synthase; Provisional
Probab=46.98 E-value=32 Score=34.97 Aligned_cols=51 Identities=12% Similarity=-0.003 Sum_probs=34.4
Q ss_pred HHHHHHHHHcCcceEEEeee--eeeeecCCCceecchHHHHHHHHHHHcCCeEE
Q 015723 135 VNQLKILKSINVDGVMVDCW--WGIVEAHTPQVYNWSGYRRLFQIVRELELKLQ 186 (402)
Q Consensus 135 ~~dL~~LK~aGVdgV~vdVW--WGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~ 186 (402)
++.|+.||++|+|.+.++.= -+....--+ .-+|....+.++.++++|+++.
T Consensus 136 ~e~l~~LkeAGld~~n~~leT~p~~f~~I~~-~~~~~~rl~~i~~a~~~G~~v~ 188 (345)
T PRK15108 136 ESQAQRLANAGLDYYNHNLDTSPEFYGNIIT-TRTYQERLDTLEKVRDAGIKVC 188 (345)
T ss_pred HHHHHHHHHcCCCEEeeccccChHhcCCCCC-CCCHHHHHHHHHHHHHcCCcee
Confidence 78899999999998877531 111111111 1167777788888888899774
No 177
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=46.33 E-value=85 Score=30.83 Aligned_cols=69 Identities=10% Similarity=0.051 Sum_probs=44.4
Q ss_pred HHHHHHHHHcCcceEEEeee---eeeeec-CCCceecchHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCccccCChhh
Q 015723 135 VNQLKILKSINVDGVMVDCW---WGIVEA-HTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWV 210 (402)
Q Consensus 135 ~~dL~~LK~aGVdgV~vdVW---WGiVE~-~~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsFHqCGgNVGDt~~IpLP~WV 210 (402)
.++++..+++|++.|.+-+= +-.-.. ...-...+....++++.+++.|++|.+.+. +..-..|..|
T Consensus 74 ~~di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~e----------da~r~~~~~l 143 (262)
T cd07948 74 MDDARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSE----------DSFRSDLVDL 143 (262)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEE----------eeCCCCHHHH
Confidence 34788888999999887542 000000 012234577788899999999999988664 2233347777
Q ss_pred hhh
Q 015723 211 MEI 213 (402)
Q Consensus 211 ~~~ 213 (402)
.+.
T Consensus 144 ~~~ 146 (262)
T cd07948 144 LRV 146 (262)
T ss_pred HHH
Confidence 654
No 178
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=46.33 E-value=15 Score=36.70 Aligned_cols=65 Identities=17% Similarity=0.176 Sum_probs=48.1
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeecCCCceec--chHHHHH-HHHHHHcCCeEEEEEeeeccCCCCCCCccccCChh
Q 015723 135 VNQLKILKSINVDGVMVDCWWGIVEAHTPQVYN--WSGYRRL-FQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQW 209 (402)
Q Consensus 135 ~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Yd--ws~Y~~l-~~mvr~~GLKv~vvmsFHqCGgNVGDt~~IpLP~W 209 (402)
..||++|+..||..|-.--+|= ++...++.|- |+-...+ ..-+.++|||+.+-++.| |..-+|.|
T Consensus 14 ~eDlekMa~sGI~~Vit~AhdP-~~~~~~~v~~~h~~rl~~~E~~Ra~~~Gl~~~vavGvH---------Pr~iP~e~ 81 (254)
T COG1099 14 FEDLEKMALSGIREVITLAHDP-YPMKTAEVYLDHFRRLLGVEPERAEKAGLKLKVAVGVH---------PRAIPPEL 81 (254)
T ss_pred HHHHHHHHHhChhhhhhcccCC-CCcccHHHHHHHHHHHHccchhhHHhhCceeeEEeccC---------CCCCCchH
Confidence 4799999999999998888887 6666666653 3333333 445789999999988887 55556775
No 179
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=46.19 E-value=54 Score=34.74 Aligned_cols=48 Identities=10% Similarity=0.168 Sum_probs=38.0
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeecCCC-------ceecchHHHHHHHHHHHcCCeEEE
Q 015723 135 VNQLKILKSINVDGVMVDCWWGIVEAHTP-------QVYNWSGYRRLFQIVRELELKLQV 187 (402)
Q Consensus 135 ~~dL~~LK~aGVdgV~vdVWWGiVE~~~p-------~~Ydws~Y~~l~~mvr~~GLKv~v 187 (402)
++-|+.||++|+..|.+++ |...+ +..+.+...+.+++++++|+++.+
T Consensus 287 ~ell~~l~~aG~~~v~iGi-----ES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~ 341 (497)
T TIGR02026 287 ADILHLYRRAGLVHISLGT-----EAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEA 341 (497)
T ss_pred HHHHHHHHHhCCcEEEEcc-----ccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEE
Confidence 3567899999999999874 54332 456788899999999999998765
No 180
>PRK12568 glycogen branching enzyme; Provisional
Probab=45.84 E-value=53 Score=37.31 Aligned_cols=61 Identities=11% Similarity=0.171 Sum_probs=41.4
Q ss_pred ccChHHHHHH-HHHHHHcCcceEEEeee--------eee-------eecCCCceecchHHHHHHHHHHHcCCeEEEEEee
Q 015723 128 LVDPEILVNQ-LKILKSINVDGVMVDCW--------WGI-------VEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSF 191 (402)
Q Consensus 128 ~~~~~~l~~d-L~~LK~aGVdgV~vdVW--------WGi-------VE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsF 191 (402)
..+.+.+.+. |..||++||+.|.+--- ||. +++ .=| .=..++++++.++++||+|++=+-+
T Consensus 265 ~~~~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~-~~G--~~~dfk~lV~~~H~~Gi~VIlD~V~ 341 (730)
T PRK12568 265 PLDWPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTA-RHG--SPDGFAQFVDACHRAGIGVILDWVS 341 (730)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCc-ccC--CHHHHHHHHHHHHHCCCEEEEEecc
Confidence 3456777777 59999999999976421 331 111 000 1136999999999999999775555
No 181
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=45.79 E-value=18 Score=35.72 Aligned_cols=62 Identities=15% Similarity=0.244 Sum_probs=39.1
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeee--eeee-e----c------CCCceec--------chHHHHHHHHHHHcCCeEEEE
Q 015723 130 DPEILVNQLKILKSINVDGVMVDCW--WGIV-E----A------HTPQVYN--------WSGYRRLFQIVRELELKLQVV 188 (402)
Q Consensus 130 ~~~~l~~dL~~LK~aGVdgV~vdVW--WGiV-E----~------~~p~~Yd--------ws~Y~~l~~mvr~~GLKv~vv 188 (402)
+.+.++.-|+.+|+.|.+.|.+.+. |-.. . + ..+.++| |.-.+++++++.+.||-+.+|
T Consensus 28 ~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~YF~~~d~~i~~a~~~Gi~~~lv 107 (289)
T PF13204_consen 28 TREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAYFDHLDRRIEKANELGIEAALV 107 (289)
T ss_dssp -HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----HHHHHHHHHHHHHHTT-EEEEE
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 5578888999999999999999999 5422 1 1 1122233 556788999999999999765
Q ss_pred Eee
Q 015723 189 MSF 191 (402)
Q Consensus 189 msF 191 (402)
+..
T Consensus 108 ~~w 110 (289)
T PF13204_consen 108 PFW 110 (289)
T ss_dssp SS-
T ss_pred EEE
Confidence 553
No 182
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=45.64 E-value=50 Score=33.99 Aligned_cols=56 Identities=11% Similarity=0.019 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEE
Q 015723 132 EILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQV 187 (402)
Q Consensus 132 ~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~v 187 (402)
....-..+.+|++|.|+|.+-++|+-=+...-..-......++.+-|++.||-+.+
T Consensus 106 ~~~~~sve~a~~~GAdAVk~lv~~~~d~~~~~~~~~~~~l~rv~~ec~~~giPlll 161 (340)
T PRK12858 106 LLDNWSVRRIKEAGADAVKLLLYYRPDEDDAINDRKHAFVERVGAECRANDIPFFL 161 (340)
T ss_pred ccccccHHHHHHcCCCEEEEEEEeCCCcchHHHHHHHHHHHHHHHHHHHcCCceEE
Confidence 34555678899999999999999993222111567888999999999999999866
No 183
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=45.38 E-value=76 Score=30.63 Aligned_cols=71 Identities=13% Similarity=0.246 Sum_probs=52.7
Q ss_pred ccChHHHHHHHHHHHHcC--cceEEEeeeeeeeecCCCcee-------cchHHHHHHHHHHHcCCeEEEEEeeeccCCCC
Q 015723 128 LVDPEILVNQLKILKSIN--VDGVMVDCWWGIVEAHTPQVY-------NWSGYRRLFQIVRELELKLQVVMSFHECGGNV 198 (402)
Q Consensus 128 ~~~~~~l~~dL~~LK~aG--VdgV~vdVWWGiVE~~~p~~Y-------dws~Y~~l~~mvr~~GLKv~vvmsFHqCGgNV 198 (402)
..+.+.+.+-++.+++.| +|+|.+|.+|.. .-+.+ .|.-.+++++.+++.|+|+++++.
T Consensus 20 ~~~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~----~~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~-------- 87 (265)
T cd06589 20 YGDQDKVLEVIDGMRENDIPLDGFVLDDDYTD----GYGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWID-------- 87 (265)
T ss_pred CCCHHHHHHHHHHHHHcCCCccEEEECccccc----CCceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeC--------
Confidence 357788999999999855 679999999863 23333 355678999999999999977443
Q ss_pred CCCccccCChhhhhhhh
Q 015723 199 GDDVHIPLPQWVMEIGQ 215 (402)
Q Consensus 199 GDt~~IpLP~WV~~~g~ 215 (402)
|.| -.|..+.-+
T Consensus 88 ---P~v--~~w~~~~~~ 99 (265)
T cd06589 88 ---PYI--REWWAEVVK 99 (265)
T ss_pred ---hhH--HHHHHHHHH
Confidence 444 678876544
No 184
>PLN02561 triosephosphate isomerase
Probab=45.32 E-value=1.2e+02 Score=30.05 Aligned_cols=44 Identities=11% Similarity=0.142 Sum_probs=33.5
Q ss_pred HHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHH----HHHHHcCCeEEEEEe
Q 015723 137 QLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLF----QIVRELELKLQVVMS 190 (402)
Q Consensus 137 dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~----~mvr~~GLKv~vvms 190 (402)
...+||++|++.|.|+ +++++=.|..=++++ ..+.++||+.++ |
T Consensus 80 S~~mL~d~G~~~viiG--------HSERR~~f~Etd~~v~~Kv~~al~~gl~pIv--C 127 (253)
T PLN02561 80 SAEMLVNLGIPWVILG--------HSERRALLGESNEFVGDKVAYALSQGLKVIA--C 127 (253)
T ss_pred CHHHHHHcCCCEEEEC--------cccccCccCCChHHHHHHHHHHHHCcCEEEE--E
Confidence 4678999999999998 466666677664444 458889999855 7
No 185
>PRK06233 hypothetical protein; Provisional
Probab=45.30 E-value=42 Score=34.46 Aligned_cols=67 Identities=12% Similarity=0.257 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHcCcceEEEeee-eeee-ecC-C--CceecchHHHH-------HHHHHHHcCCeEEEEEeeeccCCCCC
Q 015723 132 EILVNQLKILKSINVDGVMVDCW-WGIV-EAH-T--PQVYNWSGYRR-------LFQIVRELELKLQVVMSFHECGGNVG 199 (402)
Q Consensus 132 ~~l~~dL~~LK~aGVdgV~vdVW-WGiV-E~~-~--p~~Ydws~Y~~-------l~~mvr~~GLKv~vvmsFHqCGgNVG 199 (402)
+++++.+++|.++|+..|-+|.= |+.. +.. . ..--.+..+.+ +++.+-+ |+.--+.+++|-|-||-.
T Consensus 171 ~a~~~Ei~~L~~aG~~~IQiDeP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~-~~p~d~~i~~H~C~Gn~~ 249 (372)
T PRK06233 171 QAYHDTIQHFYDLGARYIQLDDTTWAYLISKLNDTENDPKEHQKYVKLAEDAVYVINKALA-DLPEDLTVTTHICRGNFK 249 (372)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCHHhhhccccccccchhhhhhHHHHHHHHHHHHHHHHh-CCCcCCEEEEEeeCCCCC
Confidence 46777889999999999999987 8742 210 0 10002233322 3333332 552222349999988863
No 186
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=45.15 E-value=85 Score=36.50 Aligned_cols=65 Identities=12% Similarity=0.122 Sum_probs=47.2
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCcee-------------cchHHHHHHHHHHHcCCeEEEEEeeeccC
Q 015723 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVY-------------NWSGYRRLFQIVRELELKLQVVMSFHECG 195 (402)
Q Consensus 130 ~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Y-------------dws~Y~~l~~mvr~~GLKv~vvmsFHqCG 195 (402)
+-+.+.+.|..||++||+.|-+.-..-.... +.--| ..+.++++++.++++||+|++=+-+--++
T Consensus 18 tf~~~~~~l~YL~~LGis~IyLsPi~~a~~g-s~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~NH~~ 95 (879)
T PRK14511 18 TFDDAAELVPYFADLGVSHLYLSPILAARPG-STHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVPNHMA 95 (879)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECcCccCCCC-CCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccccc
Confidence 4578999999999999999977654322111 11122 34789999999999999998866665444
No 187
>PRK14565 triosephosphate isomerase; Provisional
Probab=44.45 E-value=39 Score=33.19 Aligned_cols=44 Identities=16% Similarity=0.132 Sum_probs=36.9
Q ss_pred HHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHH----HHHHHcCCeEEEEEe
Q 015723 137 QLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLF----QIVRELELKLQVVMS 190 (402)
Q Consensus 137 dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~----~mvr~~GLKv~vvms 190 (402)
...+||++|++.|.|+ +++++=.|..=++++ +.+.++||+.++ |
T Consensus 77 S~~mLkd~G~~~viiG--------HSERR~~f~Etd~~V~~Kv~~al~~gl~pIv--C 124 (237)
T PRK14565 77 SAKMLKECGCSYVILG--------HSERRSTFHETDSDIRLKAESAIESGLIPII--C 124 (237)
T ss_pred CHHHHHHcCCCEEEEC--------cccccCcCCcCHHHHHHHHHHHHHCCCEEEE--E
Confidence 4678999999999998 567777788888888 789999999855 7
No 188
>PRK06520 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=44.30 E-value=43 Score=34.39 Aligned_cols=67 Identities=13% Similarity=0.227 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHcCcceEEEeee-eeee-ecC-----CCceec----chHHHHHHHHHHHcCCeEEEEEeeeccCCCCC
Q 015723 132 EILVNQLKILKSINVDGVMVDCW-WGIV-EAH-----TPQVYN----WSGYRRLFQIVRELELKLQVVMSFHECGGNVG 199 (402)
Q Consensus 132 ~~l~~dL~~LK~aGVdgV~vdVW-WGiV-E~~-----~p~~Yd----ws~Y~~l~~mvr~~GLKv~vvmsFHqCGgNVG 199 (402)
+++++.+++|.++|+..|-+|.= |+.. ... .+...+ =..|.++++.+-+ |+.--+.+++|-|-||-.
T Consensus 170 ~al~~Ei~~L~~aG~~~IQiDep~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~n~~~~-~~p~d~~v~~HiC~Gn~~ 247 (368)
T PRK06520 170 KTWRDAIKAFYDAGCRYLQLDDTVWAYLCSDDQRQQIRERGDDPDELARIYARVLNKALA-GKPADLTIGLHVCRGNFR 247 (368)
T ss_pred HHHHHHHHHHHHCCCCEEEecCcchhhccChhhhhhhhhccCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEeecCCCC
Confidence 46778889999999999999988 8752 110 011112 1233355554443 663333459999998853
No 189
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=43.90 E-value=59 Score=34.61 Aligned_cols=52 Identities=10% Similarity=0.050 Sum_probs=41.9
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEEEEee
Q 015723 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSF 191 (402)
Q Consensus 130 ~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsF 191 (402)
+.+.+++++++..++||+.|+|-.--.-++ -..+.++.++++|+++++.+|+
T Consensus 94 pddvv~~~v~~A~~~Gvd~irif~~lnd~~----------n~~~~v~~ak~~G~~v~~~i~~ 145 (448)
T PRK12331 94 ADDVVESFVQKSVENGIDIIRIFDALNDVR----------NLETAVKATKKAGGHAQVAISY 145 (448)
T ss_pred chhhHHHHHHHHHHCCCCEEEEEEecCcHH----------HHHHHHHHHHHcCCeEEEEEEe
Confidence 456789999999999999988877533332 3788999999999999887774
No 190
>PRK07360 FO synthase subunit 2; Reviewed
Probab=43.60 E-value=33 Score=35.02 Aligned_cols=57 Identities=16% Similarity=0.122 Sum_probs=39.1
Q ss_pred HHHHHHHHHHcCcceEEE--eee--eeeeecCCCceecchHHHHHHHHHHHcCCeEEEEEe
Q 015723 134 LVNQLKILKSINVDGVMV--DCW--WGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMS 190 (402)
Q Consensus 134 l~~dL~~LK~aGVdgV~v--dVW--WGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvms 190 (402)
.++.|++||+||++.+.- ... -.+-+.-.|++-.+..+.+.++.+++.||++-.-|=
T Consensus 162 ~~e~l~~LkeAGld~~~~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~~Gl~~~sg~i 222 (371)
T PRK07360 162 YEEVLKALKDAGLDSMPGTAAEILVDEVRRIICPEKIKTAEWIEIVKTAHKLGLPTTSTMM 222 (371)
T ss_pred HHHHHHHHHHcCCCcCCCcchhhccHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCceeeEE
Confidence 467899999999999940 000 000001136777888889999999999999955333
No 191
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=43.45 E-value=62 Score=36.92 Aligned_cols=62 Identities=15% Similarity=0.183 Sum_probs=41.8
Q ss_pred ccChHHH-HHHHHHHHHcCcceEEEeeeeeeeecCCCceecc-----------------hHHHHHHHHHHHcCCeEEEEE
Q 015723 128 LVDPEIL-VNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNW-----------------SGYRRLFQIVRELELKLQVVM 189 (402)
Q Consensus 128 ~~~~~~l-~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydw-----------------s~Y~~l~~mvr~~GLKv~vvm 189 (402)
+..-+.+ ++.|..||++|++.|.+-- +.|. +....| ..++++++.+.++||+|++=+
T Consensus 246 ~gty~~~~~~~L~ylk~LG~t~I~LmP---i~e~--~~~~~wGY~~~~~fa~~~~~Gtp~dlk~LVd~aH~~GI~VilDv 320 (758)
T PLN02447 246 VNSYREFADDVLPRIKALGYNAVQLMA---IQEH--AYYGSFGYHVTNFFAVSSRSGTPEDLKYLIDKAHSLGLRVLMDV 320 (758)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEECC---cccc--CCCCCCCcCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 4444555 5569999999999998752 2221 111122 459999999999999997755
Q ss_pred ee-ecc
Q 015723 190 SF-HEC 194 (402)
Q Consensus 190 sF-HqC 194 (402)
-+ |.+
T Consensus 321 V~nH~~ 326 (758)
T PLN02447 321 VHSHAS 326 (758)
T ss_pred cccccc
Confidence 44 443
No 192
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=43.24 E-value=77 Score=31.07 Aligned_cols=51 Identities=4% Similarity=-0.035 Sum_probs=40.2
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEEEEe
Q 015723 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMS 190 (402)
Q Consensus 130 ~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvms 190 (402)
+.+..+.++++..+.|++.|++-+-.. |.+--.+.++.+++.|+++++-++
T Consensus 89 p~~~~~~di~~~~~~g~~~iri~~~~~----------~~~~~~~~i~~ak~~G~~v~~~i~ 139 (275)
T cd07937 89 PDDVVELFVEKAAKNGIDIFRIFDALN----------DVRNLEVAIKAVKKAGKHVEGAIC 139 (275)
T ss_pred CcHHHHHHHHHHHHcCCCEEEEeecCC----------hHHHHHHHHHHHHHCCCeEEEEEE
Confidence 456789999999999999998855322 256788899999999999876443
No 193
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=43.17 E-value=1.1e+02 Score=29.32 Aligned_cols=53 Identities=13% Similarity=0.115 Sum_probs=35.1
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeec----CCCceecchHHHHHHHHHHHcCCeEEE
Q 015723 135 VNQLKILKSINVDGVMVDCWWGIVEA----HTPQVYNWSGYRRLFQIVRELELKLQV 187 (402)
Q Consensus 135 ~~dL~~LK~aGVdgV~vdVWWGiVE~----~~p~~Ydws~Y~~l~~mvr~~GLKv~v 187 (402)
.++++..+++|++.|.+-+-..-.-. ......-+....++++.+++.|+++.+
T Consensus 72 ~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~ 128 (259)
T cd07939 72 KEDIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSV 128 (259)
T ss_pred HHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 45677888999999888773221100 011122356788999999999998754
No 194
>COG2352 Ppc Phosphoenolpyruvate carboxylase [Energy production and conversion]
Probab=43.10 E-value=23 Score=40.81 Aligned_cols=49 Identities=31% Similarity=0.641 Sum_probs=38.7
Q ss_pred cceEEEeeeeeeeecCCCcee---cchHHH---HHHHHHHHcCCeEEEEEeeeccCCCCCCC
Q 015723 146 VDGVMVDCWWGIVEAHTPQVY---NWSGYR---RLFQIVRELELKLQVVMSFHECGGNVGDD 201 (402)
Q Consensus 146 VdgV~vdVWWGiVE~~~p~~Y---dws~Y~---~l~~mvr~~GLKv~vvmsFHqCGgNVGDt 201 (402)
+.-||++=- -.+.++-| +|.-|+ +|+++++++|+++.. ||.-||.||--
T Consensus 558 ~QEVMlGYS----DSnKDgG~laa~Wa~y~Aq~aLv~~~~~~gV~Lrl---FHGRGGtVGRG 612 (910)
T COG2352 558 VQEVMLGYS----DSNKDGGYLAANWALYKAQLALVELCEKAGVELRL---FHGRGGSVGRG 612 (910)
T ss_pred ceEEEeccc----ccccccchhhhHHHHHHHHHHHHHHHHHhCceEEE---EccCCCCCCCC
Confidence 888998642 23345544 788886 689999999999988 99999999864
No 195
>PLN02429 triosephosphate isomerase
Probab=43.07 E-value=41 Score=34.56 Aligned_cols=43 Identities=12% Similarity=0.093 Sum_probs=37.0
Q ss_pred HHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHH----HHHcCCeEEE
Q 015723 137 QLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQI----VRELELKLQV 187 (402)
Q Consensus 137 dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~m----vr~~GLKv~v 187 (402)
.-.+||++|+..|.|+ +++++=.|..=++++.. +.++||+.++
T Consensus 139 Sa~mLkd~Gv~~ViiG--------HSERR~~f~Etd~~V~~Kv~~al~~GL~pIv 185 (315)
T PLN02429 139 SVEQLKDLGCKWVILG--------HSERRHVIGEKDEFIGKKAAYALSEGLGVIA 185 (315)
T ss_pred CHHHHHHcCCCEEEeC--------ccccCCCCCcCHHHHHHHHHHHHHCcCEEEE
Confidence 4678999999999998 56777778888899888 9999999966
No 196
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=42.93 E-value=91 Score=36.01 Aligned_cols=65 Identities=23% Similarity=0.195 Sum_probs=47.4
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCcee-------------cchHHHHHHHHHHHcCCeEEEEEeeeccC
Q 015723 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVY-------------NWSGYRRLFQIVRELELKLQVVMSFHECG 195 (402)
Q Consensus 130 ~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Y-------------dws~Y~~l~~mvr~~GLKv~vvmsFHqCG 195 (402)
+-+.+.+.|..||++||+.|-+.-.+..... +.--| ....++++++.++++||+|++=+-+--++
T Consensus 14 tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~g-s~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVpNH~a 91 (825)
T TIGR02401 14 TFDDAAALLPYLKSLGVSHLYLSPILTAVPG-STHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVPNHMA 91 (825)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCcCccCCCC-CCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccccc
Confidence 4578999999999999999977665432211 22223 36789999999999999998765554333
No 197
>PRK09121 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=42.88 E-value=39 Score=34.29 Aligned_cols=121 Identities=17% Similarity=0.134 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHcCcceEEEeee-eeeeecCCCceecchHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCccccCChhh
Q 015723 132 EILVNQLKILKSINVDGVMVDCW-WGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWV 210 (402)
Q Consensus 132 ~~l~~dL~~LK~aGVdgV~vdVW-WGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsFHqCGgNVGDt~~IpLP~WV 210 (402)
+++++.+++|.++|+..|-+|+= |...=. + .-+.|.++++.+-+ |+...+ +.|-|-||-+ +.+. .|.
T Consensus 156 ~al~~Ei~~L~~aG~~~IQiDeP~l~~~~~--~---~~~~~v~~~n~~~~-g~~~~v--~~HvC~G~~~--~~~~--~~~ 223 (339)
T PRK09121 156 KILNQEAKELEAAGVDIIQFDEPAFNVFFD--E---VNDWGVAALERAIE-GLKCET--AVHICYGYGI--KANT--DWK 223 (339)
T ss_pred HHHHHHHHHHHHCCCCEEEecccHHhhhhH--H---HHHHHHHHHHHHHc-CCCCce--EEEEeCCCCC--CCcc--ccc
Confidence 36678889999999999999987 774211 0 14566666766664 677654 6799988854 1111 121
Q ss_pred hh--------------hhhcCCCeEeeCCCCCccc-cceecccCccc---ccCCCCc-hHHHHHHHHHHHHHH
Q 015723 211 ME--------------IGQNNPEIYFTDREGRRNS-ECLTWGIDKER---VLRGRTA-VEVYFDYMRSFRVEF 264 (402)
Q Consensus 211 ~~--------------~g~~~PDI~~tDr~G~rn~-E~LSl~~D~~p---vl~GRtp-~~~Y~dfm~sF~~~f 264 (402)
.+ ..+.+-|.++-+-...|.. |-|....|+.- |..-|+| +|-=.+..+++++..
T Consensus 224 ~~~~~~~g~y~~i~~~l~~~~vd~~~lE~~~~r~~~~~l~~~~~~~v~lGvvd~k~~~lE~~e~I~~rI~~a~ 296 (339)
T PRK09121 224 KTLGSEWRQYEEAFPKLQKSNIDIISLECHNSRVPMDLLELIRGKKVMVGAIDVASDTIETPEEVADTLRKAL 296 (339)
T ss_pred cccccccccHHHHHHHHHhCCCCEEEEEecCCCCCcHHHHhcccCeEEeeeEeCCCCCCCCHHHHHHHHHHHH
Confidence 11 1256778777765544422 33332223321 2355777 555555555555444
No 198
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=42.69 E-value=1.8e+02 Score=35.00 Aligned_cols=62 Identities=15% Similarity=0.276 Sum_probs=40.2
Q ss_pred HHHHHHHHcCcceEEEe-ee----------------eeeeec---CCCcee---cchHHHHHHHHHHHcCCeEEEEEee-
Q 015723 136 NQLKILKSINVDGVMVD-CW----------------WGIVEA---HTPQVY---NWSGYRRLFQIVRELELKLQVVMSF- 191 (402)
Q Consensus 136 ~dL~~LK~aGVdgV~vd-VW----------------WGiVE~---~~p~~Y---dws~Y~~l~~mvr~~GLKv~vvmsF- 191 (402)
+.|..||++||+.|.+- |+ ||--=. .-+..| .-..++++++.++++||+|++=+-|
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDvV~N 270 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDVVFN 270 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEEccc
Confidence 44669999999999873 33 221000 001112 3456999999999999999886666
Q ss_pred eccCCC
Q 015723 192 HECGGN 197 (402)
Q Consensus 192 HqCGgN 197 (402)
|-+.+|
T Consensus 271 Ht~~~~ 276 (1221)
T PRK14510 271 HTGESN 276 (1221)
T ss_pred cccCCC
Confidence 655443
No 199
>PTZ00445 p36-lilke protein; Provisional
Probab=42.67 E-value=59 Score=31.98 Aligned_cols=60 Identities=13% Similarity=0.168 Sum_probs=45.8
Q ss_pred ccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecch------------HHHHHHHHHHHcCCeEEE
Q 015723 128 LVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWS------------GYRRLFQIVRELELKLQV 187 (402)
Q Consensus 128 ~~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws------------~Y~~l~~mvr~~GLKv~v 187 (402)
++..+....=.+.||+.||..|-+|-==-+|...+.|-.+.. .+++++..++++||+|.+
T Consensus 25 ~~~~~~~~~~v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~V 96 (219)
T PTZ00445 25 LNPHESADKFVDLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISV 96 (219)
T ss_pred CCHHHHHHHHHHHHHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEE
Confidence 455667777778899999999999865555665555555553 488899999999999976
No 200
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=42.48 E-value=1.8e+02 Score=29.20 Aligned_cols=110 Identities=15% Similarity=0.071 Sum_probs=65.7
Q ss_pred HHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCcc--ccCChhhhhh
Q 015723 136 NQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVH--IPLPQWVMEI 213 (402)
Q Consensus 136 ~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsFHqCGgNVGDt~~--IpLP~WV~~~ 213 (402)
+-++.|+++|+. |. -.++...+... .....+.++.++++|+.+..-.-. ..| |.|+.. ..|=.++.+.
T Consensus 188 ell~~L~~~g~~-v~-----i~l~~~h~~el-~~~~~~ai~~L~~~Gi~v~~q~vL--l~g-vNd~~~~l~~l~~~l~~~ 257 (321)
T TIGR03822 188 ALIAALKTSGKT-VY-----VALHANHAREL-TAEARAACARLIDAGIPMVSQSVL--LRG-VNDDPETLAALMRAFVEC 257 (321)
T ss_pred HHHHHHHHcCCc-EE-----EEecCCChhhc-CHHHHHHHHHHHHcCCEEEEEeeE--eCC-CCCCHHHHHHHHHHHHhc
Confidence 445678888854 11 13333334433 578889999999999988552222 123 566643 3445566644
Q ss_pred hhcCCCeEeeCCCCCccccceecccCcccccCCCCchHHHHHHHHHHHHHHhhhhc
Q 015723 214 GQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFV 269 (402)
Q Consensus 214 g~~~PDI~~tDr~G~rn~E~LSl~~D~~pvl~GRtp~~~Y~dfm~sF~~~fa~~~~ 269 (402)
+-.---++..|..+... .-|.+.+.++++++..+.....+.-
T Consensus 258 gv~pyyl~~~~p~~g~~--------------~f~~~~~~~~~i~~~l~~~~~g~~~ 299 (321)
T TIGR03822 258 RIKPYYLHHLDLAPGTA--------------HFRVTIEEGQALVRALRGRISGLAQ 299 (321)
T ss_pred CCeeEEEEecCCCCCcc--------------cccCcHHHHHHHHHHHHHhCCCCcc
Confidence 33222234445443321 1257899999999999998888754
No 201
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=42.47 E-value=73 Score=32.09 Aligned_cols=48 Identities=6% Similarity=0.068 Sum_probs=37.9
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeecCC-------CceecchHHHHHHHHHHHcCCe-EEE
Q 015723 135 VNQLKILKSINVDGVMVDCWWGIVEAHT-------PQVYNWSGYRRLFQIVRELELK-LQV 187 (402)
Q Consensus 135 ~~dL~~LK~aGVdgV~vdVWWGiVE~~~-------p~~Ydws~Y~~l~~mvr~~GLK-v~v 187 (402)
++.|+.||++||+.|.+++ |... ....++.-+.+.+++++++|++ |.+
T Consensus 100 ~e~l~~l~~~Gv~risiGv-----qS~~~~~l~~lgR~~~~~~~~~ai~~l~~~G~~~v~~ 155 (360)
T TIGR00539 100 AEWCKGLKGAGINRLSLGV-----QSFRDDKLLFLGRQHSAKNIAPAIETALKSGIENISL 155 (360)
T ss_pred HHHHHHHHHcCCCEEEEec-----ccCChHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEE
Confidence 4668999999999999986 3322 2347899999999999999996 434
No 202
>PRK10426 alpha-glucosidase; Provisional
Probab=41.99 E-value=1.3e+02 Score=33.35 Aligned_cols=87 Identities=13% Similarity=0.247 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHHHcC--cceEEEeeeeeeeec-CCCce---ec-----chHHHHHHHHHHHcCCeEEEEEeeeccCCCCC
Q 015723 131 PEILVNQLKILKSIN--VDGVMVDCWWGIVEA-HTPQV---YN-----WSGYRRLFQIVRELELKLQVVMSFHECGGNVG 199 (402)
Q Consensus 131 ~~~l~~dL~~LK~aG--VdgV~vdVWWGiVE~-~~p~~---Yd-----ws~Y~~l~~mvr~~GLKv~vvmsFHqCGgNVG 199 (402)
.+.+.+-++.+++.| +|+|-+|-|-+.-.. .+... |. |...+++++.+++.|+|+++++-
T Consensus 220 ~~~v~~v~~~~r~~~IP~d~i~lddw~~~~~~~~g~~~~~~~~~d~~~FPdp~~mi~~L~~~G~k~v~~i~--------- 290 (635)
T PRK10426 220 TEVVQKKLDTMRNAGVKVNGIWAQDWSGIRMTSFGKRLMWNWKWDSERYPQLDSRIKQLNEEGIQFLGYIN--------- 290 (635)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEecccccccccccccccccceEChhhCCCHHHHHHHHHHCCCEEEEEEc---------
Confidence 467888899999987 588888865332221 11111 22 34458999999999999977554
Q ss_pred CCccccCChhhhhhhhcCCCeEeeCCCCCc
Q 015723 200 DDVHIPLPQWVMEIGQNNPEIYFTDREGRR 229 (402)
Q Consensus 200 Dt~~IpLP~WV~~~g~~~PDI~~tDr~G~r 229 (402)
|.+..-.-+-++++ .-+.|.+|.+|..
T Consensus 291 --P~v~~~~~~y~e~~-~~gy~vk~~~g~~ 317 (635)
T PRK10426 291 --PYLASDGDLCEEAA-EKGYLAKDADGGD 317 (635)
T ss_pred --CccCCCCHHHHHHH-HCCcEEECCCCCE
Confidence 33332222334444 3478888888764
No 203
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=41.80 E-value=70 Score=30.20 Aligned_cols=56 Identities=21% Similarity=0.367 Sum_probs=40.7
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEEEEeee
Q 015723 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFH 192 (402)
Q Consensus 130 ~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsFH 192 (402)
+.++++++++.||+ ++|.|-+-.=||.=....| -..-+++++.+-+.|..+ |++-|
T Consensus 158 ~~~~i~~~i~~lr~-~~D~vIv~~H~G~e~~~~p----~~~~~~~A~~l~~~G~Dv--IiG~H 213 (239)
T smart00854 158 DREKILADIARARK-KADVVIVSLHWGVEYQYEP----TDEQRELAHALIDAGADV--VIGHH 213 (239)
T ss_pred CHHHHHHHHHHHhc-cCCEEEEEecCccccCCCC----CHHHHHHHHHHHHcCCCE--EEcCC
Confidence 46889999999998 6999998888997322222 223366777777789888 55766
No 204
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=41.67 E-value=69 Score=30.27 Aligned_cols=51 Identities=8% Similarity=-0.003 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeE
Q 015723 133 ILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKL 185 (402)
Q Consensus 133 ~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv 185 (402)
.++..|+.+.++|+++|.+. .+......+..++=...+++-+++++.||++
T Consensus 11 ~~~~~~~~~~~~G~~~vel~--~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~l 61 (273)
T smart00518 11 GLYKAFIEAVDIGARSFQLF--LGNPRSWKGVRLSEETAEKFKEALKENNIDV 61 (273)
T ss_pred cHhHHHHHHHHcCCCEEEEE--CCCCCCCCCCCCCHHHHHHHHHHHHHcCCCE
Confidence 57889999999999999983 2222111122233345888999999999996
No 205
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=41.56 E-value=86 Score=23.71 Aligned_cols=44 Identities=11% Similarity=0.215 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEE
Q 015723 133 ILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQV 187 (402)
Q Consensus 133 ~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~v 187 (402)
.+++-++++|+.|++.|-+- +- . +..++.++.+.+++.||++++
T Consensus 16 ~~~~~~~~a~~~g~~~v~iT------Dh-~----~~~~~~~~~~~~~~~gi~~i~ 59 (67)
T smart00481 16 SPEELVKRAKELGLKAIAIT------DH-G----NLFGAVEFYKAAKKAGIKPII 59 (67)
T ss_pred CHHHHHHHHHHcCCCEEEEe------eC-C----cccCHHHHHHHHHHcCCeEEE
Confidence 46678899999999999664 32 1 567788899999999999866
No 206
>PTZ00333 triosephosphate isomerase; Provisional
Probab=40.23 E-value=65 Score=31.87 Aligned_cols=44 Identities=14% Similarity=0.193 Sum_probs=36.0
Q ss_pred HHHHHHHcCcceEEEeeeeeeeecCCCceecc----hHHHHHHHHHHHcCCeEEEEEe
Q 015723 137 QLKILKSINVDGVMVDCWWGIVEAHTPQVYNW----SGYRRLFQIVRELELKLQVVMS 190 (402)
Q Consensus 137 dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydw----s~Y~~l~~mvr~~GLKv~vvms 190 (402)
.-.+||++|++.|.|+ +++++=.| .--.+-++.+.++||+.++ |
T Consensus 81 S~~mL~d~G~~~viiG--------HSERR~~f~Etd~~I~~Kv~~al~~gl~pIl--C 128 (255)
T PTZ00333 81 SAEMLKDLGINWTILG--------HSERRQYFGETNEIVAQKVKNALENGLKVIL--C 128 (255)
T ss_pred CHHHHHHcCCCEEEEC--------cccccCcCCCCcHHHHHHHHHHHHCCCEEEE--E
Confidence 3478999999999998 57777777 6667777789999999955 7
No 207
>PRK09875 putative hydrolase; Provisional
Probab=39.90 E-value=1e+02 Score=30.92 Aligned_cols=67 Identities=13% Similarity=0.253 Sum_probs=45.7
Q ss_pred CCcccChHHHHHHHHHHHHcCcceEEEeee-eeeeecCCCceecchHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCcc
Q 015723 125 NCELVDPEILVNQLKILKSINVDGVMVDCW-WGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVH 203 (402)
Q Consensus 125 ~~~~~~~~~l~~dL~~LK~aGVdgV~vdVW-WGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsFHqCGgNVGDt~~ 203 (402)
+..+.+.+...+.|+.+|++|+..| ||+= .|+ |+ --..+.++.++.|+.|++.=.|| -.
T Consensus 27 ~~~l~~~~~~~~el~~~~~~Gg~ti-Vd~T~~g~------GR----d~~~l~~is~~tgv~Iv~~TG~y---------~~ 86 (292)
T PRK09875 27 DCRLDQYAFICQEMNDLMTRGVRNV-IEMTNRYM------GR----NAQFMLDVMRETGINVVACTGYY---------QD 86 (292)
T ss_pred ccccccHHHHHHHHHHHHHhCCCeE-EecCCCcc------Cc----CHHHHHHHHHHhCCcEEEcCcCC---------CC
Confidence 4567788999999999999999987 4433 222 21 23567788889999995533332 22
Q ss_pred ccCChhhh
Q 015723 204 IPLPQWVM 211 (402)
Q Consensus 204 IpLP~WV~ 211 (402)
.-.|.|+.
T Consensus 87 ~~~p~~~~ 94 (292)
T PRK09875 87 AFFPEHVA 94 (292)
T ss_pred ccCCHHHh
Confidence 34688886
No 208
>COG1619 LdcA Uncharacterized proteins, homologs of microcin C7 resistance protein MccF [Defense mechanisms]
Probab=39.86 E-value=88 Score=32.06 Aligned_cols=92 Identities=14% Similarity=0.209 Sum_probs=64.5
Q ss_pred eeCCCcccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCC
Q 015723 122 IDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDD 201 (402)
Q Consensus 122 V~~~~~~~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsFHqCGgNVGDt 201 (402)
|...+.....+.+++.++.||..|.+.+--..=+...+.-+.- +=+-..+|.++..+-..|+ |||. =|| ..
T Consensus 16 IaPSs~~~~~~~~~~a~~~L~~~G~~v~~~~~i~~~~~~~a~s--~~~R~~dL~~af~d~~vk~--Il~~--rGG---yg 86 (313)
T COG1619 16 IAPSSGATATDALKRAIQRLENLGFEVVFGEHILRRDQYFAGS--DEERAEDLMSAFSDPDVKA--ILCV--RGG---YG 86 (313)
T ss_pred EecCcccchHHHHHHHHHHHHHcCCEEEechhhhhccccccCC--HHHHHHHHHHHhcCCCCeE--EEEc--ccC---CC
Confidence 3333333468899999999999998887766655544431111 1234567888888888998 5575 244 46
Q ss_pred ccccCChhhhhhhhcCCCeEe
Q 015723 202 VHIPLPQWVMEIGQNNPEIYF 222 (402)
Q Consensus 202 ~~IpLP~WV~~~g~~~PDI~~ 222 (402)
++==||-|-.+..+++|-||+
T Consensus 87 s~rlLp~ld~~~i~~~pKifi 107 (313)
T COG1619 87 SNRLLPYLDYDLIRNHPKIFI 107 (313)
T ss_pred hhhhhhhcchHHHhcCCceEE
Confidence 776799999888899999885
No 209
>PTZ00413 lipoate synthase; Provisional
Probab=39.46 E-value=2.4e+02 Score=30.11 Aligned_cols=125 Identities=21% Similarity=0.247 Sum_probs=73.7
Q ss_pred ccChHHHHHHHHHHHHcCcceEEEeeeee-eeecCCCceecchHHHHHHHHHHHc--CCeEEEEEeeeccCCCCCCCccc
Q 015723 128 LVDPEILVNQLKILKSINVDGVMVDCWWG-IVEAHTPQVYNWSGYRRLFQIVREL--ELKLQVVMSFHECGGNVGDDVHI 204 (402)
Q Consensus 128 ~~~~~~l~~dL~~LK~aGVdgV~vdVWWG-iVE~~~p~~Ydws~Y~~l~~mvr~~--GLKv~vvmsFHqCGgNVGDt~~I 204 (402)
+.|++...+.-++.+++|+.-+.|--.+. .+.. -..+-+.+.++.|++. ++++.+.+. |- ..
T Consensus 176 ~lD~eEp~~vA~av~~~Gl~~~VVTSv~RDDL~D-----~ga~~~a~~I~~Ir~~~p~~~Ievlig---------Df-~g 240 (398)
T PTZ00413 176 PLDPNEPEKVAKAVAEMGVDYIVMTMVDRDDLPD-----GGASHVARCVELIKESNPELLLEALVG---------DF-HG 240 (398)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEEEcCCCCCh-----hhHHHHHHHHHHHHccCCCCeEEEcCC---------cc-cc
Confidence 45889999999999999998777766664 1221 3688899999999985 677766221 10 00
Q ss_pred cCChhhhhhhhcCCCeEeeCCCCCccccce-ecccCcccccCCCCchHHHHHHHHHHHHHHhhhhcCceEE--EEEeecc
Q 015723 205 PLPQWVMEIGQNNPEIYFTDREGRRNSECL-TWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIA--EIEVGLG 281 (402)
Q Consensus 205 pLP~WV~~~g~~~PDI~~tDr~G~rn~E~L-Sl~~D~~pvl~GRtp~~~Y~dfm~sF~~~fa~~~~~~vI~--eI~VGlG 281 (402)
-+..+....+.-||++ +.|-|+. ++. | .=|++--.|.+..+-++.. .+.+..++.+ .|-||||
T Consensus 241 -~~e~l~~L~eAG~dvy------nHNLETv~rLy----p--~VRt~~atYe~sLe~Lr~A-Ke~f~~gi~tcSGiIVGLG 306 (398)
T PTZ00413 241 -DLKSVEKLANSPLSVY------AHNIECVERIT----P--YVRDRRASYRQSLKVLEHV-KEFTNGAMLTKSSIMLGLG 306 (398)
T ss_pred -CHHHHHHHHhcCCCEE------ecccccCHhHH----H--HHccCcCCHHHHHHHHHHH-HHHhcCCceEeeeeEecCC
Confidence 1245555567788887 3344443 122 1 1133223566666666544 2221113333 6667765
No 210
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=39.45 E-value=30 Score=30.24 Aligned_cols=63 Identities=14% Similarity=0.131 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHHHcCcceEEEeeee-eeeec---CCCceecchHHHHHHHHHHHcCCeEEEEEeeeccCCC
Q 015723 131 PEILVNQLKILKSINVDGVMVDCWW-GIVEA---HTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGN 197 (402)
Q Consensus 131 ~~~l~~dL~~LK~aGVdgV~vdVWW-GiVE~---~~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsFHqCGgN 197 (402)
.+.+++.++..+.+|+..|.+...+ ..-.. +..-..--+.++++.+++++.|+++ +++-+.+.
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i----~lE~~~~~ 136 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRI----ALENHPGP 136 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEE----EEE-SSSS
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceE----EEecccCc
Confidence 5688999999999999999988552 11111 0111222347788999999999877 44544443
No 211
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=39.31 E-value=68 Score=31.39 Aligned_cols=44 Identities=11% Similarity=0.129 Sum_probs=32.4
Q ss_pred HHHHHHHcCcceEEEeeeeeeeecCCCceecc----hHHHHHHHHHHHcCCeEEEEEe
Q 015723 137 QLKILKSINVDGVMVDCWWGIVEAHTPQVYNW----SGYRRLFQIVRELELKLQVVMS 190 (402)
Q Consensus 137 dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydw----s~Y~~l~~mvr~~GLKv~vvms 190 (402)
...+||++|++.|.|+- ++++-.| .--.+-+..+.++||+.++ |
T Consensus 76 S~~mL~d~G~~~viiGH--------SERR~~f~Et~~~i~~Kv~~a~~~gl~pIv--C 123 (242)
T cd00311 76 SAEMLKDAGAKYVIIGH--------SERRQYFGETDEDVAKKVKAALEAGLTPIL--C 123 (242)
T ss_pred CHHHHHHcCCCEEEeCc--------ccccCcCCCCcHHHHHHHHHHHHCCCEEEE--E
Confidence 56789999999999984 5555333 3444556678899999855 7
No 212
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=39.01 E-value=64 Score=33.03 Aligned_cols=46 Identities=15% Similarity=0.163 Sum_probs=35.2
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeecCCC----------ceecchHHHHHHHHHHHcCCe-E
Q 015723 135 VNQLKILKSINVDGVMVDCWWGIVEAHTP----------QVYNWSGYRRLFQIVRELELK-L 185 (402)
Q Consensus 135 ~~dL~~LK~aGVdgV~vdVWWGiVE~~~p----------~~Ydws~Y~~l~~mvr~~GLK-v 185 (402)
.++++.||++||++|++.. |...+ ...+|..-.+.++.++++|++ |
T Consensus 163 ~e~l~~Lk~aGv~r~~i~l-----ET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v 219 (371)
T PRK09240 163 EEEYAELVELGLDGVTVYQ-----ETYNPATYAKHHLRGPKRDFEYRLETPERAGRAGIRKI 219 (371)
T ss_pred HHHHHHHHHcCCCEEEEEE-----ecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHHcCCCee
Confidence 5667999999999999763 43222 245777778889999999996 6
No 213
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=38.85 E-value=45 Score=31.23 Aligned_cols=54 Identities=19% Similarity=0.187 Sum_probs=43.2
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEE
Q 015723 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQV 187 (402)
Q Consensus 130 ~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~v 187 (402)
+...+..+++...++|+++|.+-...+..+ ..+......++.+.+++.|+++++
T Consensus 74 ~~~~~~~~v~~a~~~Ga~~v~~~~~~~~~~----~~~~~~~i~~v~~~~~~~g~~~ii 127 (235)
T cd00958 74 NDKVLVASVEDAVRLGADAVGVTVYVGSEE----EREMLEELARVAAEAHKYGLPLIA 127 (235)
T ss_pred CchhhhcCHHHHHHCCCCEEEEEEecCCch----HHHHHHHHHHHHHHHHHcCCCEEE
Confidence 456777789999999999998888877432 356777888899999999999866
No 214
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=38.02 E-value=2.6e+02 Score=27.45 Aligned_cols=66 Identities=6% Similarity=0.107 Sum_probs=45.8
Q ss_pred CCcccChHHHHHHHHHHHHcCcceEEEeee----eeeeecC-----CC---------ceecchHHHHHHHHHHHcCCeEE
Q 015723 125 NCELVDPEILVNQLKILKSINVDGVMVDCW----WGIVEAH-----TP---------QVYNWSGYRRLFQIVRELELKLQ 186 (402)
Q Consensus 125 ~~~~~~~~~l~~dL~~LK~aGVdgV~vdVW----WGiVE~~-----~p---------~~Ydws~Y~~l~~mvr~~GLKv~ 186 (402)
...+.+.+.|++-|..|...+.|...+-.- |-+-=+. .. |.|.=+-+++|++.+++.||.|+
T Consensus 11 aR~~~~~~~ik~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~di~~lv~yA~~~gI~VI 90 (351)
T PF00728_consen 11 ARHFFSVDTIKRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGGYYTKEDIRELVAYAKERGIEVI 90 (351)
T ss_dssp SSS-B-HHHHHHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTESEBEHHHHHHHHHHHHHTT-EEE
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCccccccccccCCHHHHHHHHHHHHHcCCcee
Confidence 346778899999999999999998876543 3322110 11 26777999999999999999998
Q ss_pred EEEe
Q 015723 187 VVMS 190 (402)
Q Consensus 187 vvms 190 (402)
|-+-
T Consensus 91 Peid 94 (351)
T PF00728_consen 91 PEID 94 (351)
T ss_dssp EEEE
T ss_pred eecc
Confidence 8443
No 215
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=37.97 E-value=56 Score=36.55 Aligned_cols=64 Identities=14% Similarity=0.355 Sum_probs=41.7
Q ss_pred HHHHH--HHHHHHHcCcceEEEe-e----------------eeeeeec---CCCcee----cchHHHHHHHHHHHcCCeE
Q 015723 132 EILVN--QLKILKSINVDGVMVD-C----------------WWGIVEA---HTPQVY----NWSGYRRLFQIVRELELKL 185 (402)
Q Consensus 132 ~~l~~--dL~~LK~aGVdgV~vd-V----------------WWGiVE~---~~p~~Y----dws~Y~~l~~mvr~~GLKv 185 (402)
..+.+ -|..||++||+.|.+- | .||.-=. .-+..| .-..++++++.++++||+|
T Consensus 182 ~Gi~~~~~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~V 261 (688)
T TIGR02100 182 AGLAHPAMIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEV 261 (688)
T ss_pred HHHhccchhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEE
Confidence 44544 4999999999999763 2 2442000 001222 2456999999999999999
Q ss_pred EEEEee-eccC
Q 015723 186 QVVMSF-HECG 195 (402)
Q Consensus 186 ~vvmsF-HqCG 195 (402)
++=+-| |-+.
T Consensus 262 IlDvV~NHt~~ 272 (688)
T TIGR02100 262 ILDVVYNHTAE 272 (688)
T ss_pred EEEECcCCccC
Confidence 876666 4443
No 216
>PRK15452 putative protease; Provisional
Probab=37.93 E-value=35 Score=36.23 Aligned_cols=37 Identities=19% Similarity=0.371 Sum_probs=0.0
Q ss_pred CccEEEeeccceeeCCCcccChHHHHHHHHHHHHcCcceEEE
Q 015723 110 YVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMV 151 (402)
Q Consensus 110 ~vpvyVMlPLd~V~~~~~~~~~~~l~~dL~~LK~aGVdgV~v 151 (402)
+++|||.+| ++..+..+ +.+.+.|+.|+++|||+|.|
T Consensus 59 g~kvyvt~n--~i~~e~el---~~~~~~l~~l~~~gvDgvIV 95 (443)
T PRK15452 59 GKKFYVVVN--IAPHNAKL---KTFIRDLEPVIAMKPDALIM 95 (443)
T ss_pred CCEEEEEec--CcCCHHHH---HHHHHHHHHHHhCCCCEEEE
No 217
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=37.93 E-value=84 Score=32.84 Aligned_cols=48 Identities=19% Similarity=0.200 Sum_probs=37.8
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeecCC-------CceecchHHHHHHHHHHHcCCeEEE
Q 015723 135 VNQLKILKSINVDGVMVDCWWGIVEAHT-------PQVYNWSGYRRLFQIVRELELKLQV 187 (402)
Q Consensus 135 ~~dL~~LK~aGVdgV~vdVWWGiVE~~~-------p~~Ydws~Y~~l~~mvr~~GLKv~v 187 (402)
.+-|+.||++|+..|.+++ |... ....+.+.+.+.++.++++|+.+.+
T Consensus 287 ~e~l~~l~~aG~~~v~iGi-----ES~s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~ 341 (472)
T TIGR03471 287 YETLKVMKENGLRLLLVGY-----ESGDQQILKNIKKGLTVEIARRFTRDCHKLGIKVHG 341 (472)
T ss_pred HHHHHHHHHcCCCEEEEcC-----CCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEE
Confidence 3568999999999998875 4322 2346778899999999999999875
No 218
>PRK15492 triosephosphate isomerase; Provisional
Probab=37.74 E-value=59 Score=32.26 Aligned_cols=44 Identities=14% Similarity=0.166 Sum_probs=35.4
Q ss_pred HHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHH----HHHHHHHcCCeEEEEEe
Q 015723 137 QLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRR----LFQIVRELELKLQVVMS 190 (402)
Q Consensus 137 dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~----l~~mvr~~GLKv~vvms 190 (402)
.-.+||++|++.|.|+ +++++=.|..=++ -++.+.++||+.++ |
T Consensus 86 Sa~mLkd~G~~~viiG--------HSERR~~f~Etd~~v~~Kv~~a~~~gl~pIv--C 133 (260)
T PRK15492 86 SPLMLKEIGTQLVMIG--------HSERRHKFGETDQEENAKVLAALKHDFTTLL--C 133 (260)
T ss_pred CHHHHHHcCCCEEEEC--------ccccccccCcchHHHHHHHHHHHHCCCEEEE--E
Confidence 4578999999999998 4666667777777 66678999999966 7
No 219
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=37.47 E-value=40 Score=33.41 Aligned_cols=46 Identities=17% Similarity=0.157 Sum_probs=35.3
Q ss_pred HHHHHHcCcceEEEeeeeeeeecCCCc---eecchHHHHHHHHHHHcCCeEEE
Q 015723 138 LKILKSINVDGVMVDCWWGIVEAHTPQ---VYNWSGYRRLFQIVRELELKLQV 187 (402)
Q Consensus 138 L~~LK~aGVdgV~vdVWWGiVE~~~p~---~Ydws~Y~~l~~mvr~~GLKv~v 187 (402)
+..++++|++|||+|-+ .+.+.. ..+...+.+.++.+|++||+.-+
T Consensus 137 ~~~a~~aG~~gvMlDTa----~Kdg~~L~d~~~~~~L~~Fv~~ar~~gL~~aL 185 (235)
T PF04476_consen 137 PEIAAEAGFDGVMLDTA----DKDGGSLFDHLSEEELAEFVAQARAHGLMCAL 185 (235)
T ss_pred HHHHHHcCCCEEEEecc----cCCCCchhhcCCHHHHHHHHHHHHHccchhhc
Confidence 46779999999999976 333333 35567788899999999999843
No 220
>PRK14705 glycogen branching enzyme; Provisional
Probab=37.35 E-value=62 Score=38.83 Aligned_cols=54 Identities=15% Similarity=0.212 Sum_probs=37.7
Q ss_pred HHHHHH-HHHHHHcCcceEEEeeeeeeeecCCCceecch-----------------HHHHHHHHHHHcCCeEEEEEe
Q 015723 132 EILVNQ-LKILKSINVDGVMVDCWWGIVEAHTPQVYNWS-----------------GYRRLFQIVRELELKLQVVMS 190 (402)
Q Consensus 132 ~~l~~d-L~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws-----------------~Y~~l~~mvr~~GLKv~vvms 190 (402)
+.+.+. |..||++||+.|.+-- +.|- |..++|. .++++++.+.++||+|++=+-
T Consensus 765 ~~l~~~lldYlk~LGvt~IeLmP---v~e~--p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~VILD~V 836 (1224)
T PRK14705 765 RELAKELVDYVKWLGFTHVEFMP---VAEH--PFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGVLLDWV 836 (1224)
T ss_pred HHHHHHHHHHHHHhCCCEEEECc---cccC--CCCCCCCCCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 455555 6999999999997632 1221 3333443 489999999999999976433
No 221
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=37.27 E-value=33 Score=38.52 Aligned_cols=58 Identities=22% Similarity=0.312 Sum_probs=46.4
Q ss_pred cChHHHHHHHHHHHHcCcceEEEeeeeeeeecCC--Cce---------ecchHHHHHHHHHHHcCCeEEE
Q 015723 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEAHT--PQV---------YNWSGYRRLFQIVRELELKLQV 187 (402)
Q Consensus 129 ~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~--p~~---------Ydws~Y~~l~~mvr~~GLKv~v 187 (402)
+.++.|+++|+.||+.|.+.|+++.+........ |.+ |. +.|..++.++++.|++...
T Consensus 69 Vspe~Fe~QL~~Lk~nGY~~VSL~el~~~~~g~~~LP~KaV~LTFDDGy~-sny~~AlPILKkyg~pATf 137 (672)
T PRK14581 69 VRSSALNEQFVWLRDNGYHVVSVDQILAARNGGPTLPDKAVLLTFDDGYS-SFYRRVYPLLKAYKWSAVL 137 (672)
T ss_pred cCHHHHHHHHHHHHHCcCEEecHHHHHHHHhcCCCCCCCeEEEEEEcCCc-chHHHHHHHHHHcCCCEEE
Confidence 5789999999999999999999999976554321 222 22 5789999999999999744
No 222
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=36.87 E-value=85 Score=31.61 Aligned_cols=44 Identities=23% Similarity=0.470 Sum_probs=36.4
Q ss_pred HHHHHHHHcCcceEEEeeeeeeeecCC-------CceecchHHHHHHHHHHHcCCe
Q 015723 136 NQLKILKSINVDGVMVDCWWGIVEAHT-------PQVYNWSGYRRLFQIVRELELK 184 (402)
Q Consensus 136 ~dL~~LK~aGVdgV~vdVWWGiVE~~~-------p~~Ydws~Y~~l~~mvr~~GLK 184 (402)
+.|+.||++||+.|.|++ |... ...+++.-+.+.+++++++|++
T Consensus 100 e~l~~l~~~G~~rvsiGv-----qS~~d~~L~~l~R~~~~~~~~~ai~~l~~~g~~ 150 (374)
T PRK05799 100 EKLKILKSMGVNRLSIGL-----QAWQNSLLKYLGRIHTFEEFLENYKLARKLGFN 150 (374)
T ss_pred HHHHHHHHcCCCEEEEEC-----ccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCC
Confidence 579999999999999998 4422 2346788899999999999986
No 223
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=36.84 E-value=26 Score=33.02 Aligned_cols=48 Identities=15% Similarity=0.132 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEE
Q 015723 131 PEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQ 186 (402)
Q Consensus 131 ~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~ 186 (402)
.+-+++||+.||..||+.|-+ .+|..+=..|... .+.+.+++.||++.
T Consensus 57 ~RdL~~DL~~Lk~~G~~~Vvt-----l~~~~EL~~l~Vp---~L~~~~~~~Gi~~~ 104 (168)
T PF05706_consen 57 RRDLQADLERLKDWGAQDVVT-----LLTDHELARLGVP---DLGEAAQARGIAWH 104 (168)
T ss_dssp EB-HHHHHHHHHHTT--EEEE------S-HHHHHHTT-T---THHHHHHHTT-EEE
T ss_pred cchHHHHHHHHHHCCCCEEEE-----eCcHHHHHHcCCc---cHHHHHHHcCCEEE
Confidence 468999999999999999865 6776544555554 56688999999873
No 224
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=36.84 E-value=95 Score=26.61 Aligned_cols=45 Identities=18% Similarity=0.325 Sum_probs=32.6
Q ss_pred ccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEE
Q 015723 128 LVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQ 186 (402)
Q Consensus 128 ~~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~ 186 (402)
..+++...+-++.++++|+.+|-+- ++ +.=.++.++++++||+++
T Consensus 62 ~~~~~~~~~~v~~~~~~g~~~v~~~----------~g----~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 62 CVPPDKVPEIVDEAAALGVKAVWLQ----------PG----AESEELIEAAREAGIRVI 106 (116)
T ss_dssp -S-HHHHHHHHHHHHHHT-SEEEE-----------TT----S--HHHHHHHHHTT-EEE
T ss_pred EcCHHHHHHHHHHHHHcCCCEEEEE----------cc----hHHHHHHHHHHHcCCEEE
Confidence 4688999999999999999987552 22 666899999999999984
No 225
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=36.64 E-value=72 Score=30.10 Aligned_cols=59 Identities=8% Similarity=0.182 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecc--hHHHHHHHHHHHcCCeEEEEEeee
Q 015723 132 EILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNW--SGYRRLFQIVRELELKLQVVMSFH 192 (402)
Q Consensus 132 ~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydw--s~Y~~l~~mvr~~GLKv~vvmsFH 192 (402)
+.++.-|+..+.+|++.|.+.-+-...++..+..++. ..++++.+++++.|+++. +=+|
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~--lE~~ 154 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVMLA--VEIM 154 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCEEE--EEec
Confidence 5678888899999999998742210111111111111 357889999999999883 3544
No 226
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=36.55 E-value=2.1e+02 Score=26.69 Aligned_cols=108 Identities=14% Similarity=0.177 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeee----eeeeecCCCceecchHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCcccc
Q 015723 130 DPEILVNQLKILKSINVDGVMVDCW----WGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIP 205 (402)
Q Consensus 130 ~~~~l~~dL~~LK~aGVdgV~vdVW----WGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsFHqCGgNVGDt~~Ip 205 (402)
+.+.++..+++++..|++.|++-.- .-..--....+...+-..++++.+++.|+++..-+- +.+-.
T Consensus 65 ~~~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~----------~~~~~ 134 (237)
T PF00682_consen 65 NEEDIERAVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCE----------DASRT 134 (237)
T ss_dssp CHHHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEET----------TTGGS
T ss_pred hHHHHHHHHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCcc----------ccccc
Q ss_pred CChhhhhh----hhcCCC-eEeeCCCCCccccceecccCcccccCCCCchHHHHHHHHHHHHHHhh
Q 015723 206 LPQWVMEI----GQNNPE-IYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNE 266 (402)
Q Consensus 206 LP~WV~~~----g~~~PD-I~~tDr~G~rn~E~LSl~~D~~pvl~GRtp~~~Y~dfm~sF~~~fa~ 266 (402)
-|.-+.+. .+..+| |.+.|-.|.-.+ ..+.++.+.+++++.+
T Consensus 135 ~~~~~~~~~~~~~~~g~~~i~l~Dt~G~~~P-------------------~~v~~lv~~~~~~~~~ 181 (237)
T PF00682_consen 135 DPEELLELAEALAEAGADIIYLADTVGIMTP-------------------EDVAELVRALREALPD 181 (237)
T ss_dssp SHHHHHHHHHHHHHHT-SEEEEEETTS-S-H-------------------HHHHHHHHHHHHHSTT
T ss_pred cHHHHHHHHHHHHHcCCeEEEeeCccCCcCH-------------------HHHHHHHHHHHHhccC
No 227
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=36.40 E-value=4.2e+02 Score=25.96 Aligned_cols=153 Identities=17% Similarity=0.193 Sum_probs=89.0
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHH-HcCCeEEEEEeeeccCCCCCCCccccCCh
Q 015723 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVR-ELELKLQVVMSFHECGGNVGDDVHIPLPQ 208 (402)
Q Consensus 130 ~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr-~~GLKv~vvmsFHqCGgNVGDt~~IpLP~ 208 (402)
..+.+.+.++.||.+|++.|.|- .+++.-....=.++...++ +.|+.+++=++ |. |...+.|-.
T Consensus 13 ~~~~l~~~~~~l~~~~pd~isvT--------~~~~~~~~~~t~~~a~~l~~~~g~~~i~Hlt---~r----~~n~~~l~~ 77 (272)
T TIGR00676 13 GEENLWETVDRLSPLDPDFVSVT--------YGAGGSTRDRTVRIVRRIKKETGIPTVPHLT---CI----GATREEIRE 77 (272)
T ss_pred hHHHHHHHHHHHhcCCCCEEEec--------cCCCCCcHHHHHHHHHHHHHhcCCCeeEEee---ec----CCCHHHHHH
Confidence 34788889999999999999985 3566556666677888888 56999977444 22 234466778
Q ss_pred hhhhhhhcCCCeEeeCCCCCccccceecccCcccccCCCCchHHHH---HHHHHHHHHHhhhhcCceEEEEEeeccCCCc
Q 015723 209 WVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYF---DYMRSFRVEFNEFFVDGIIAEIEVGLGPCGE 285 (402)
Q Consensus 209 WV~~~g~~~PDI~~tDr~G~rn~E~LSl~~D~~pvl~GRtp~~~Y~---dfm~sF~~~fa~~~~~~vI~eI~VGlGP~GE 285 (402)
|+... ...|-+|- |-+.-|..+... .++...|. +.++.+++...+ +.||.+
T Consensus 78 ~L~~~----------~~~Gi~nv--L~l~GD~~~~~~-~~~~~~f~~a~~Li~~i~~~~~~---------f~ig~a---- 131 (272)
T TIGR00676 78 ILREY----------RELGIRHI--LALRGDPPKGEG-TPTPGGFNYASELVEFIRNEFGD---------FDIGVA---- 131 (272)
T ss_pred HHHHH----------HHCCCCEE--EEeCCCCCCCCC-CCCCCCCCCHHHHHHHHHHhcCC---------eeEEEE----
Confidence 87742 23343322 444444322111 12222333 222333332221 334433
Q ss_pred cCCCC-CCCCCC---------Ccc-CCCccc---ccccHHHHHHHHHHHHHhC
Q 015723 286 LRYPT-YPAKHG---------WKY-PGIGEF---QCYDKYLMKSLSKAAEARG 324 (402)
Q Consensus 286 LRYPS-yp~~~g---------W~~-pGiGEF---QCYDk~~~~~fr~~a~~kg 324 (402)
=||. ||.... ++. -|..-| -|||......|.+.+++.|
T Consensus 132 -~~Peghp~~~~~~~~~~~L~~K~~aGA~f~iTQ~~fd~~~~~~~~~~~~~~g 183 (272)
T TIGR00676 132 -AYPEKHPEAPNLEEDIENLKRKVDAGADYAITQLFFDNDDYYRFVDRCRAAG 183 (272)
T ss_pred -eCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeeccccCHHHHHHHHHHHHHcC
Confidence 2555 555422 111 465434 4899999999999998886
No 228
>TIGR03586 PseI pseudaminic acid synthase.
Probab=35.99 E-value=95 Score=31.85 Aligned_cols=72 Identities=18% Similarity=0.289 Sum_probs=45.5
Q ss_pred cEEEeeccceeeCCCcccChHHHHHHHHHHHHcCcceEEEeee--eeeeecCCCc---------------------eecc
Q 015723 112 PVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCW--WGIVEAHTPQ---------------------VYNW 168 (402)
Q Consensus 112 pvyVMlPLd~V~~~~~~~~~~~l~~dL~~LK~aGVdgV~vdVW--WGiVE~~~p~---------------------~Ydw 168 (402)
|+||-+-+++ |.+| +-+.-.+=+++.|++|.|+|-.--| =.++.+..+. .+.+
T Consensus 1 ~~~iIAEiG~-NH~G---~~~~A~~lI~~A~~aGAdavKFQ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~ 76 (327)
T TIGR03586 1 PPFIIAELSA-NHNG---SLERALAMIEAAKAAGADAIKLQTYTPDTITLDSDRPEFIIKGGLWDGRTLYDLYQEAHTPW 76 (327)
T ss_pred CCEEEEEECC-CCCC---hHHHHHHHHHHHHHhCCCEEEeeeccHHHhhccccccccccccCCcCCccHHHHHHHhhCCH
Confidence 3455555443 3333 4466677778889999999877654 1121111111 1235
Q ss_pred hHHHHHHHHHHHcCCeEEE
Q 015723 169 SGYRRLFQIVRELELKLQV 187 (402)
Q Consensus 169 s~Y~~l~~mvr~~GLKv~v 187 (402)
++|.+|++.+++.||.+..
T Consensus 77 e~~~~L~~~~~~~Gi~~~s 95 (327)
T TIGR03586 77 EWHKELFERAKELGLTIFS 95 (327)
T ss_pred HHHHHHHHHHHHhCCcEEE
Confidence 7788999999999999854
No 229
>PLN02389 biotin synthase
Probab=35.76 E-value=4.5e+02 Score=27.39 Aligned_cols=56 Identities=11% Similarity=0.156 Sum_probs=41.5
Q ss_pred ccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEE
Q 015723 128 LVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQ 186 (402)
Q Consensus 128 ~~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~ 186 (402)
+.+++.+.+..+.+++.|+..+.+-.-|-..- ....++.+|.++++.+++.||.+.
T Consensus 115 ~Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~---~e~~~~e~i~eiir~ik~~~l~i~ 170 (379)
T PLN02389 115 LMSKDDVLEAAKRAKEAGSTRFCMGAAWRDTV---GRKTNFNQILEYVKEIRGMGMEVC 170 (379)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEecccCCC---CChhHHHHHHHHHHHHhcCCcEEE
Confidence 35778888999999999999988765552211 111257899999999998888764
No 230
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=35.64 E-value=1.2e+02 Score=29.85 Aligned_cols=61 Identities=20% Similarity=0.336 Sum_probs=42.3
Q ss_pred cChHHHHHHHHHHHHcC--cceEEEeeeeeee-ec----CCCceecc-----hHHHHHHHHHHHcCCeEEEEE
Q 015723 129 VDPEILVNQLKILKSIN--VDGVMVDCWWGIV-EA----HTPQVYNW-----SGYRRLFQIVRELELKLQVVM 189 (402)
Q Consensus 129 ~~~~~l~~dL~~LK~aG--VdgV~vdVWWGiV-E~----~~p~~Ydw-----s~Y~~l~~mvr~~GLKv~vvm 189 (402)
.+.+.+.+-++.+++.| +|+|.+|.=|..- ++ .+=+.|+| -..+++++-+++.|+|+++++
T Consensus 22 ~s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v 94 (292)
T cd06595 22 YSDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNL 94 (292)
T ss_pred CCHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEe
Confidence 36678888999998866 5889998844321 10 11234444 457899999999999997644
No 231
>PF03786 UxuA: D-mannonate dehydratase (UxuA); InterPro: IPR004628 This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.; GO: 0008927 mannonate dehydratase activity, 0006064 glucuronate catabolic process; PDB: 1TZ9_A 3FVM_A 3BDK_B 3BAN_B 3DBN_B.
Probab=35.55 E-value=64 Score=33.69 Aligned_cols=50 Identities=20% Similarity=0.231 Sum_probs=34.1
Q ss_pred HHHHHHHc-CcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEEEEe
Q 015723 137 QLKILKSI-NVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMS 190 (402)
Q Consensus 137 dL~~LK~a-GVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvms 190 (402)
.|..++++ ||++|.....+-- .....+-...+++-+.+.++||++-+|=|
T Consensus 16 ~l~~irQ~~Gv~giV~al~~~p----~g~~W~~e~i~~~k~~ie~~GL~~~vIEs 66 (351)
T PF03786_consen 16 TLWDIRQQPGVTGIVTALHDIP----NGEVWDYEEIRALKERIEAAGLTLSVIES 66 (351)
T ss_dssp -HHHHCTSTTEEEEEE--SSS-----TTS---HHHHHHHHHHHHCTT-EEEEEES
T ss_pred hHHHHHHhcCCCCeeeCCCCCC----CCCCCCHHHHHHHHHHHHHcCCeEEEEec
Confidence 36778886 9999998775421 24567778899999999999999988666
No 232
>PLN02899 alpha-galactosidase
Probab=35.44 E-value=50 Score=37.01 Aligned_cols=54 Identities=22% Similarity=0.346 Sum_probs=39.8
Q ss_pred HHHHcCcceEEEeeeeeeeec-------------CCCcee-----cch------HHHHHHHHHHHcCCeEEEEEeeeccC
Q 015723 140 ILKSINVDGVMVDCWWGIVEA-------------HTPQVY-----NWS------GYRRLFQIVRELELKLQVVMSFHECG 195 (402)
Q Consensus 140 ~LK~aGVdgV~vdVWWGiVE~-------------~~p~~Y-----dws------~Y~~l~~mvr~~GLKv~vvmsFHqCG 195 (402)
-||.+|=+-|.||.-|..-+. .+.|+. .|- +.+.|++.|++.|||. ..|.+-
T Consensus 60 GLk~~GY~YVnIDDcW~~~~~~g~~~~s~g~~~~D~~GrLvPDp~RFPSs~~g~GmK~LADYVHskGLKF----GIY~~~ 135 (633)
T PLN02899 60 RLLPFGYEYVVVDYLWYRKKVEGAYVDSLGFDVIDEWGRPIPDPGRWPSSRGGKGFTEVAEKVHAMGLKF----GIHVMR 135 (633)
T ss_pred chHhhCCeEEEEccccccccccccccccccccccCCCCCCccCcccCCCCccCCCcHHHHHHHHhCCcce----EEEecC
Confidence 578999999999999864321 111222 232 8999999999999999 778776
Q ss_pred CC
Q 015723 196 GN 197 (402)
Q Consensus 196 gN 197 (402)
|.
T Consensus 136 Gi 137 (633)
T PLN02899 136 GI 137 (633)
T ss_pred CC
Confidence 64
No 233
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=35.44 E-value=2.1e+02 Score=28.95 Aligned_cols=92 Identities=18% Similarity=0.205 Sum_probs=63.0
Q ss_pred CCccEEEeeccceeeCCCcccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEEE
Q 015723 109 PYVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVV 188 (402)
Q Consensus 109 ~~vpvyVMlPLd~V~~~~~~~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vv 188 (402)
..+|+-+|.=...| -...+++=++.+|++|||||.|.-- | ...=+++.+.++++||+.+.+
T Consensus 93 ~~~Pivlm~Y~Npi-------~~~Gie~F~~~~~~~GvdGlivpDL--------P----~ee~~~~~~~~~~~gi~~I~l 153 (265)
T COG0159 93 VKVPIVLMTYYNPI-------FNYGIEKFLRRAKEAGVDGLLVPDL--------P----PEESDELLKAAEKHGIDPIFL 153 (265)
T ss_pred CCCCEEEEEeccHH-------HHhhHHHHHHHHHHcCCCEEEeCCC--------C----hHHHHHHHHHHHHcCCcEEEE
Confidence 45677777655543 3357778899999999999998632 1 122346778888999999886
Q ss_pred EeeeccCCCCCCCccccCChhhhhhhhc-CCCeEeeCCCCCccc
Q 015723 189 MSFHECGGNVGDDVHIPLPQWVMEIGQN-NPEIYFTDREGRRNS 231 (402)
Q Consensus 189 msFHqCGgNVGDt~~IpLP~WV~~~g~~-~PDI~~tDr~G~rn~ 231 (402)
.+ ||- .+.++..+.+. ..-|++..+.|..-.
T Consensus 154 va-----------Ptt-~~~rl~~i~~~a~GFiY~vs~~GvTG~ 185 (265)
T COG0159 154 VA-----------PTT-PDERLKKIAEAASGFIYYVSRMGVTGA 185 (265)
T ss_pred eC-----------CCC-CHHHHHHHHHhCCCcEEEEecccccCC
Confidence 66 443 45666665443 356899999876533
No 234
>PF04187 DUF399: Protein of unknown function, DUF399; InterPro: IPR007314 No function is known for any member of this family.; PDB: 2G5G_X.
Probab=35.38 E-value=27 Score=33.10 Aligned_cols=22 Identities=27% Similarity=0.560 Sum_probs=17.4
Q ss_pred ecchHHHHHHHHHHHcCCeEEE
Q 015723 166 YNWSGYRRLFQIVRELELKLQV 187 (402)
Q Consensus 166 Ydws~Y~~l~~mvr~~GLKv~v 187 (402)
|+|+.|+.|++.++++||+++.
T Consensus 86 ~~~~~Y~pl~~~Ar~~~ipviA 107 (213)
T PF04187_consen 86 NDWALYRPLVEFARENGIPVIA 107 (213)
T ss_dssp --GGGTHHHHHHHHTSS--EEE
T ss_pred CchHHHHHHHHHHHHCCCCEEE
Confidence 5899999999999999999977
No 235
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=35.34 E-value=86 Score=29.99 Aligned_cols=45 Identities=20% Similarity=0.079 Sum_probs=37.2
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCcee--cchHHHHHHHHHHHcC
Q 015723 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVY--NWSGYRRLFQIVRELE 182 (402)
Q Consensus 130 ~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Y--dws~Y~~l~~mvr~~G 182 (402)
|+..++++|+.|+++|++.+.+|+ -+|+| |.+.=-+.++.+|+.+
T Consensus 17 d~~~l~~~~~~l~~~~~~~~H~Di--------mDg~fvpn~~~G~~~v~~lr~~~ 63 (228)
T PTZ00170 17 DFSKLADEAQDVLSGGADWLHVDV--------MDGHFVPNLSFGPPVVKSLRKHL 63 (228)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEec--------ccCccCCCcCcCHHHHHHHHhcC
Confidence 678999999999999999999998 35666 5666677888888775
No 236
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=35.34 E-value=1.1e+02 Score=30.49 Aligned_cols=63 Identities=13% Similarity=0.231 Sum_probs=45.5
Q ss_pred ccChHHHHHHHHHHHHcC--cceEEEeeeeeeeec--CCCceecch-----HHHHHHHHHHHcCCeEEEEEe
Q 015723 128 LVDPEILVNQLKILKSIN--VDGVMVDCWWGIVEA--HTPQVYNWS-----GYRRLFQIVRELELKLQVVMS 190 (402)
Q Consensus 128 ~~~~~~l~~dL~~LK~aG--VdgV~vdVWWGiVE~--~~p~~Ydws-----~Y~~l~~mvr~~GLKv~vvms 190 (402)
..+.+.+.+-++.+++.| +++|.+|.-|-.... ..-+.|+|. --+++++-+++.|+|+++++-
T Consensus 20 y~~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~ 91 (317)
T cd06598 20 YRNWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITE 91 (317)
T ss_pred CCCHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEc
Confidence 456788899999999877 589999975643322 123355543 568999999999999988554
No 237
>COG0407 HemE Uroporphyrinogen-III decarboxylase [Coenzyme metabolism]
Probab=34.99 E-value=69 Score=33.31 Aligned_cols=58 Identities=21% Similarity=0.293 Sum_probs=44.4
Q ss_pred HHHHHHHHcCcceEEEeeeee-eeecCCCceecchHHHHHHHHHHHcCCeEEEEEeeeccCC
Q 015723 136 NQLKILKSINVDGVMVDCWWG-IVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGG 196 (402)
Q Consensus 136 ~dL~~LK~aGVdgV~vdVWWG-iVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsFHqCGg 196 (402)
+-|+++-++|+|.|.|---|+ .+......+|...+-.++++-+++.+-+ .+|+ |-|+|
T Consensus 193 ~Yl~~qi~aGAdavqifDsW~g~l~~~~~~~f~~~~~~~i~~~vk~~~~~-~pii--~f~~g 251 (352)
T COG0407 193 EYLKAQIEAGADAVQIFDSWAGVLSMIDYDEFVLPYMKRIVREVKEVKGG-VPVI--HFCKG 251 (352)
T ss_pred HHHHHHHHhCCCEEEeeccccccCCcccHHHHhhhHHHHHHHHHHHhCCC-CcEE--EECCC
Confidence 345666789999999988775 4444568899999999999999988776 3333 55876
No 238
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=34.81 E-value=1.9e+02 Score=30.71 Aligned_cols=116 Identities=24% Similarity=0.473 Sum_probs=57.8
Q ss_pred CCceecc---hHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCccccCChhhhhhhhcCCCeEeeCCCCCccccceeccc
Q 015723 162 TPQVYNW---SGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRRNSECLTWGI 238 (402)
Q Consensus 162 ~p~~Ydw---s~Y~~l~~mvr~~GLKv~vvmsFHqCGgNVGDt~~IpLP~WV~~~g~~~PDI~~tDr~G~rn~E~LSl~~ 238 (402)
.++.||| .+=+.+++.+++.|.+... +| . -++|.|+..-|... .+.....+| -.
T Consensus 94 ~dg~yDW~~D~gQrwfL~~Ak~rGV~~f~--aF----------S-NSPP~~MT~NG~~~--------g~~~~~~NL--k~ 150 (384)
T PF14587_consen 94 ADGSYDWDADAGQRWFLKAAKERGVNIFE--AF----------S-NSPPWWMTKNGSAS--------GGDDGSDNL--KP 150 (384)
T ss_dssp TTS-B-TTSSHHHHHHHHHHHHTT---EE--EE------------SSS-GGGSSSSSSB---------S-SSS-SS---T
T ss_pred CCCCcCCCCCHHHHHHHHHHHHcCCCeEE--Ee----------e-cCCCHHHhcCCCCC--------CCCcccccc--Ch
Confidence 6899999 5677789999999999966 55 1 37999998433321 111112222 22
Q ss_pred CcccccCCCCchHHHHHHHHHHHHHHhhhhcCceEEEEEeeccCCCccCCCCCCCCCCCccCCCcccccc-c----HHHH
Q 015723 239 DKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRYPTYPAKHGWKYPGIGEFQCY-D----KYLM 313 (402)
Q Consensus 239 D~~pvl~GRtp~~~Y~dfm~sF~~~fa~~~~~~vI~eI~VGlGP~GELRYPSyp~~~gW~~pGiGEFQCY-D----k~~~ 313 (402)
|. .+.|.+||....++| +-.| =.|+-| +|-=| |.. .|.. |--| -|. + ..+.
T Consensus 151 d~---------y~~FA~YLa~Vv~~~-~~~G-I~f~~I----sP~NE------P~~-~W~~-~~QE-G~~~~~~e~a~vI 206 (384)
T PF14587_consen 151 DN---------YDAFADYLADVVKHY-KKWG-INFDYI----SPFNE------PQW-NWAG-GSQE-GCHFTNEEQADVI 206 (384)
T ss_dssp T----------HHHHHHHHHHHHHHH-HCTT---EEEE----E--S-------TTS--GG---SS--B----HHHHHHHH
T ss_pred hH---------HHHHHHHHHHHHHHH-HhcC-Ccccee----CCcCC------CCC-CCCC-CCcC-CCCCCHHHHHHHH
Confidence 22 788888999999988 4344 133333 33322 221 2622 2111 132 2 3455
Q ss_pred HHHHHHHHHhC
Q 015723 314 KSLSKAAEARG 324 (402)
Q Consensus 314 ~~fr~~a~~kg 324 (402)
+.|+..++++|
T Consensus 207 ~~L~~~L~~~G 217 (384)
T PF14587_consen 207 RALDKALKKRG 217 (384)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHhcC
Confidence 67888888888
No 239
>TIGR02751 PEPCase_arch phosphoenolpyruvate carboxylase, archaeal type. This family is the archaeal-type phosphoenolpyruvate carboxylase, although not every host species is archaeal. These sequences bear little resemblance to the bacterial/eukaryotic type. The members from Sulfolobus solfataricus and Methanothermobacter thermautotrophicus were verified experimentally, while the activity is known to be present in a number of other archaea.
Probab=34.70 E-value=69 Score=35.03 Aligned_cols=55 Identities=16% Similarity=0.215 Sum_probs=41.6
Q ss_pred cchHHH---HHHHHHHHcCCeEEEEEeeeccCCCCCCCccccC-ChhhhhhhhcCCCeEeeCCCC
Q 015723 167 NWSGYR---RLFQIVRELELKLQVVMSFHECGGNVGDDVHIPL-PQWVMEIGQNNPEIYFTDREG 227 (402)
Q Consensus 167 dws~Y~---~l~~mvr~~GLKv~vvmsFHqCGgNVGDt~~IpL-P~WV~~~g~~~PDI~~tDr~G 227 (402)
.|+-|. +|.+++++.|+++.+ ||.+||.+|-- -+ |.-+.++-..+|..+-...+|
T Consensus 224 ~~al~~Aq~~L~e~~ee~gV~l~p---fhGrGgspfRG---Gg~P~n~a~il~qppG~~t~TeQs 282 (506)
T TIGR02751 224 VLSNKYALSRLYELSEETGISIYP---IIGAGSLPFRG---HLSPENIERVLDEYPGVYTFTVQS 282 (506)
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEE---EeecCCCCcCC---CCChhhHHHHHhcCCCceEEeeec
Confidence 566554 567788999999988 89999998754 45 777666667888877666666
No 240
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=34.58 E-value=5e+02 Score=26.25 Aligned_cols=124 Identities=15% Similarity=0.239 Sum_probs=75.3
Q ss_pred CCcccChHHHHHHHHHHHHcCcceEEEee----eeee--------eecCC-CceecchHHHHHHHHHHHcCCeEEEEEee
Q 015723 125 NCELVDPEILVNQLKILKSINVDGVMVDC----WWGI--------VEAHT-PQVYNWSGYRRLFQIVRELELKLQVVMSF 191 (402)
Q Consensus 125 ~~~~~~~~~l~~dL~~LK~aGVdgV~vdV----WWGi--------VE~~~-p~~Ydws~Y~~l~~mvr~~GLKv~vvmsF 191 (402)
...+.+.+.+++-|..|...++|....-. =|-+ .|..+ .+.|.=+.+++|++.+++.|+.|+| .
T Consensus 11 aR~f~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT~~di~elv~yA~~rgI~vIP--E- 87 (311)
T cd06570 11 SRHFIPVAVIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYTQEQIREVVAYARDRGIRVVP--E- 87 (311)
T ss_pred CCCCcCHHHHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccCHHHHHHHHHHHHHcCCEEEE--e-
Confidence 34567899999999999999998776532 2432 22211 3468888999999999999999988 3
Q ss_pred eccCCCCCCCccccCChhhhhhhhcCCCeEeeCCCCCccccceecccCcccccCCCCchHHHHHHHHHHHHHHhhhhc
Q 015723 192 HECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFV 269 (402)
Q Consensus 192 HqCGgNVGDt~~IpLP~WV~~~g~~~PDI~~tDr~G~rn~E~LSl~~D~~pvl~GRtp~~~Y~dfm~sF~~~fa~~~~ 269 (402)
|-.|.=.....+.+|++........... .+++.. +++.-. .+.=.+|+.++-+++.+.+.
T Consensus 88 ------------Id~PGH~~a~~~~ypel~~~~~~~~~~~---~~~~~~-~~l~~~--~p~t~~f~~~l~~E~~~lF~ 147 (311)
T cd06570 88 ------------IDVPGHASAIAVAYPELASGPGPYVIER---GWGVFE-PLLDPT--NEETYTFLDNLFGEMAELFP 147 (311)
T ss_pred ------------ecCccchHHHHHhCHHhccCCCcccccc---ccccCC-CccCCC--ChhHHHHHHHHHHHHHHhCC
Confidence 4456533333357898876543211100 011110 112111 23334667777777777664
No 241
>PRK03906 mannonate dehydratase; Provisional
Probab=34.34 E-value=66 Score=33.72 Aligned_cols=53 Identities=15% Similarity=0.319 Sum_probs=26.1
Q ss_pred CcccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCc-----------eecchHHHHHHHHHHHcCCeEE
Q 015723 126 CELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQ-----------VYNWSGYRRLFQIVRELELKLQ 186 (402)
Q Consensus 126 ~~~~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~-----------~Ydws~Y~~l~~mvr~~GLKv~ 186 (402)
+++=+.+.+++--+.+.++|.+ |..||. -|= .=....|++.++-+-++|+|++
T Consensus 37 g~~W~~~~i~~~~~~ie~~Gl~-------~~vvEs-~pv~~~Ik~g~~~rd~~ie~y~~sirnlg~~GI~~i 100 (385)
T PRK03906 37 GEVWPVEEILARKAEIEAAGLE-------WSVVES-VPVHEDIKTGTPNRDRYIENYKQTLRNLAAAGIKVV 100 (385)
T ss_pred CCCCCHHHHHHHHHHHHHcCCe-------EEEEeC-CCccHHHHcCCCCHHHHHHHHHHHHHHHHhcCCcEE
Confidence 3444555555555555555532 444554 221 1123455555555666666653
No 242
>PRK00111 hypothetical protein; Provisional
Probab=33.67 E-value=68 Score=30.57 Aligned_cols=47 Identities=23% Similarity=0.371 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHhhhhcCceEEEEEeeccCCCccCCCCCCCCCC-CccCCCcc
Q 015723 251 EVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRYPTYPAKHG-WKYPGIGE 304 (402)
Q Consensus 251 ~~Y~dfm~sF~~~fa~~~~~~vI~eI~VGlGP~GELRYPSyp~~~g-W~~pGiGE 304 (402)
+.-+-....+.+.+.+++|..+|.+|-| .||.+ ||. ..| ++++|.|-
T Consensus 128 tEL~~~r~~Il~rLNe~LG~~vV~dIri-~GP~~----psw--~~G~~~v~grgp 175 (180)
T PRK00111 128 TNLRMMQRQILQVIAEKVGPDIITELRI-FGPQA----PSW--RKGPLHVKGRGP 175 (180)
T ss_pred HHHHhHHHHHHHHHHHHcCcCceeEEEE-ECCCC----CCC--CcCCCcCCCCCC
Confidence 4444556788899999999899999999 99953 332 234 77777763
No 243
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=33.67 E-value=1.2e+02 Score=30.72 Aligned_cols=63 Identities=29% Similarity=0.351 Sum_probs=41.4
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCccccCChh
Q 015723 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQW 209 (402)
Q Consensus 130 ~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsFHqCGgNVGDt~~IpLP~W 209 (402)
+.+...+.|+.+|++|+.. +||. .|.-+-= -=..+.++.++.|+.|++.=.||. ..-.|.|
T Consensus 36 ~~~~~~~El~~~k~~Gg~t--------iVd~-T~~g~GR-d~~~l~~is~~tGv~II~~TG~y~---------~~~~p~~ 96 (308)
T PF02126_consen 36 DVEAAVAELKEFKAAGGRT--------IVDA-TPIGLGR-DVEALREISRRTGVNIIASTGFYK---------EPFYPEW 96 (308)
T ss_dssp HHHHHHHHHHHHHHTTEEE--------EEE---SGGGTB--HHHHHHHHHHHT-EEEEEEEE-S---------GGCSCHH
T ss_pred hHHHHHHHHHHHHHcCCCE--------EEec-CCcccCc-CHHHHHHHHHHhCCeEEEeCCCCc---------cccCChh
Confidence 6788999999999999887 4555 3322211 126777888899999977666652 2346788
Q ss_pred hh
Q 015723 210 VM 211 (402)
Q Consensus 210 V~ 211 (402)
+.
T Consensus 97 ~~ 98 (308)
T PF02126_consen 97 VR 98 (308)
T ss_dssp HH
T ss_pred hh
Confidence 76
No 244
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=33.60 E-value=1.2e+02 Score=28.87 Aligned_cols=52 Identities=21% Similarity=-0.018 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHc-CCeE
Q 015723 132 EILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVREL-ELKL 185 (402)
Q Consensus 132 ~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~-GLKv 185 (402)
..|++.|+.+|++|+++|.+.+=...-.. .+. .+=...+++.++++++ |+.+
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~i 62 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWL-SRP-LKKERAEKFKAIAEEGPSICL 62 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccC-CCC-CCHHHHHHHHHHHHHcCCCcE
Confidence 57899999999999999998763211000 000 0116788899999999 7776
No 245
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=33.46 E-value=1.5e+02 Score=27.81 Aligned_cols=56 Identities=25% Similarity=0.355 Sum_probs=41.1
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEEEEeee
Q 015723 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFH 192 (402)
Q Consensus 130 ~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsFH 192 (402)
+.+.+++.++.+|+. +|.|-+-.=||.-....|. +.-+++++.+-+.|..+ |++-|
T Consensus 160 ~~~~~~~~i~~lr~~-~D~vIv~~H~G~e~~~~p~----~~~~~la~~l~~~G~D~--IiG~H 215 (239)
T cd07381 160 DLERIAADIAEAKKK-ADIVIVSLHWGVEYSYYPT----PEQRELARALIDAGADL--VIGHH 215 (239)
T ss_pred CHHHHHHHHHHHhhc-CCEEEEEecCcccCCCCCC----HHHHHHHHHHHHCCCCE--EEcCC
Confidence 568899999999998 9999998889973222222 33456777777789998 55766
No 246
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=33.46 E-value=1.2e+02 Score=29.09 Aligned_cols=64 Identities=13% Similarity=0.133 Sum_probs=48.3
Q ss_pred EeeccceeeCCCcccChHHHHHHHHHHH-----HcCcc----eEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeE
Q 015723 115 VMLPLGIIDMNCELVDPEILVNQLKILK-----SINVD----GVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKL 185 (402)
Q Consensus 115 VMlPLd~V~~~~~~~~~~~l~~dL~~LK-----~aGVd----gV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv 185 (402)
+++|-+.|. ++.+.|.++.+.-|+.|+ .+|.. .|.|+.+...+|+ +.+.+.++.+||++
T Consensus 24 ~~~~~~~~~-~g~I~d~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r-----------~a~~~a~~~aGl~~ 91 (239)
T TIGR02529 24 VMQFADVVR-DGIVVDFLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDP-----------KVIVNVIESAGIEV 91 (239)
T ss_pred Eeccccccc-CCeEEEhHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccH-----------HHHHHHHHHcCCce
Confidence 455555554 678889999999999998 34543 5677777877766 57889999999999
Q ss_pred EEEEe
Q 015723 186 QVVMS 190 (402)
Q Consensus 186 ~vvms 190 (402)
..++.
T Consensus 92 ~~li~ 96 (239)
T TIGR02529 92 LHVLD 96 (239)
T ss_pred EEEee
Confidence 77655
No 247
>PTZ00398 phosphoenolpyruvate carboxylase; Provisional
Probab=33.36 E-value=42 Score=39.25 Aligned_cols=54 Identities=22% Similarity=0.408 Sum_probs=35.7
Q ss_pred cCcceEEEeeeeeeeecCCCceecchHHH---HHHHHHHHcCCeEEEEEeeeccCCCCCCC
Q 015723 144 INVDGVMVDCWWGIVEAHTPQVYNWSGYR---RLFQIVRELELKLQVVMSFHECGGNVGDD 201 (402)
Q Consensus 144 aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~---~l~~mvr~~GLKv~vvmsFHqCGgNVGDt 201 (402)
.|..-||++--=+-... |-=-=+|+-|+ +|.++++++|+++.+ ||.+||.||--
T Consensus 616 ~~~qeVMlGYSDS~Kd~-G~laa~w~l~~Aq~~L~~~~~~~gV~l~~---FhGrGGsvgRG 672 (974)
T PTZ00398 616 NGIQEIMIGYSDSGKDG-GRLTSAWELYKAQERLSNIARQYGVEIRF---FHGRGGSVSRG 672 (974)
T ss_pred CCeEEEEEecccccccc-cHHHHHHHHHHHHHHHHHHHHHcCCcEEE---ecCCCCCCCCC
Confidence 67788888643111111 11111566665 567788999999988 99999998753
No 248
>PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase []. It also includes chitin deacetylase from yeast [], and endoxylanases which hydrolyses glucosidic bonds in xylan [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0005975 carbohydrate metabolic process; PDB: 2IW0_A 2CC0_B 2VYO_A 2J13_A 2C71_A 2C79_A 1W1A_1 1W1B_1 1W17_A 1NY1_B ....
Probab=33.35 E-value=44 Score=27.25 Aligned_cols=19 Identities=16% Similarity=0.457 Sum_probs=11.8
Q ss_pred chHHHHHHHHHHHcCCeEE
Q 015723 168 WSGYRRLFQIVRELELKLQ 186 (402)
Q Consensus 168 ws~Y~~l~~mvr~~GLKv~ 186 (402)
-+.+.++++++++.|++..
T Consensus 17 ~~~~~~~~~~l~~~~i~at 35 (123)
T PF01522_consen 17 RDNYDRLLPLLKKYGIPAT 35 (123)
T ss_dssp HTHHHHHHHHHHHTT--EE
T ss_pred hhhHHHHHHHHHhccccee
Confidence 3567777777777777763
No 249
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=33.22 E-value=81 Score=30.11 Aligned_cols=55 Identities=11% Similarity=0.278 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceec--chHHHHHHHHHHHcCCeEE
Q 015723 132 EILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYN--WSGYRRLFQIVRELELKLQ 186 (402)
Q Consensus 132 ~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Yd--ws~Y~~l~~mvr~~GLKv~ 186 (402)
+.+++.++..+.+|++.|.+.-..-..+...+..++ -+.++++++++++.|+++.
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~ 150 (279)
T TIGR00542 94 EIMEKAIQLARDLGIRTIQLAGYDVYYEEHDEETRRRFREGLKEAVELAARAQVTLA 150 (279)
T ss_pred HHHHHHHHHHHHhCCCEEEecCcccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEE
Confidence 458889999999999998763211001111111111 2456799999999999883
No 250
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=33.19 E-value=1.2e+02 Score=33.49 Aligned_cols=52 Identities=12% Similarity=0.035 Sum_probs=38.8
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEEEEee
Q 015723 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSF 191 (402)
Q Consensus 130 ~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsF 191 (402)
+.+.++.++++.+++||+.|+|-.-...+ .-....++.++++|+++++.+||
T Consensus 95 pddvv~~~v~~a~~~Gid~~rifd~lnd~----------~~~~~ai~~ak~~G~~~~~~i~y 146 (593)
T PRK14040 95 ADDVVERFVERAVKNGMDVFRVFDAMNDP----------RNLETALKAVRKVGAHAQGTLSY 146 (593)
T ss_pred cHHHHHHHHHHHHhcCCCEEEEeeeCCcH----------HHHHHHHHHHHHcCCeEEEEEEE
Confidence 44678888999999999988887533322 45677888889999888776664
No 251
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=33.15 E-value=61 Score=33.76 Aligned_cols=59 Identities=17% Similarity=0.113 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHcCcceEEEeeeeeeeec----CCCceecchHHHHHHHHHHHcCCeEEEEEee
Q 015723 133 ILVNQLKILKSINVDGVMVDCWWGIVEA----HTPQVYNWSGYRRLFQIVRELELKLQVVMSF 191 (402)
Q Consensus 133 ~l~~dL~~LK~aGVdgV~vdVWWGiVE~----~~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsF 191 (402)
.+++-|+.||+||++.+...-===+.|. ..|.+=++.+..++.+.+.+.||+-...|-+
T Consensus 159 s~~E~l~~Lk~aGldsmpg~~aeil~e~vr~~~~p~K~~~~~wle~~~~Ah~lGI~~tatml~ 221 (370)
T COG1060 159 SYEEVLKRLKEAGLDSMPGGGAEILSEEVRKIHCPPKKSPEEWLEIHERAHRLGIPTTATMLL 221 (370)
T ss_pred CHHHHHHHHHHcCCCcCcCcceeechHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEE
Confidence 5677799999999999886543223332 4588899999999999999999999888875
No 252
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=32.90 E-value=60 Score=33.12 Aligned_cols=45 Identities=16% Similarity=0.106 Sum_probs=33.5
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeecCCCc----------eecchHHHHHHHHHHHcCCe
Q 015723 135 VNQLKILKSINVDGVMVDCWWGIVEAHTPQ----------VYNWSGYRRLFQIVRELELK 184 (402)
Q Consensus 135 ~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~----------~Ydws~Y~~l~~mvr~~GLK 184 (402)
.++++.||++||+.+++.. |.-.+. .-+|..-.+.+++++++|++
T Consensus 162 ~e~~~~Lk~aGv~r~~i~l-----ET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~~ 216 (366)
T TIGR02351 162 EEEYKKLVEAGLDGVTVYQ-----ETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGMR 216 (366)
T ss_pred HHHHHHHHHcCCCEEEEEe-----ecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCCC
Confidence 4677999999999998853 432222 33566667789999999997
No 253
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=32.67 E-value=98 Score=28.60 Aligned_cols=45 Identities=24% Similarity=0.325 Sum_probs=37.2
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcC
Q 015723 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELE 182 (402)
Q Consensus 130 ~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~G 182 (402)
|++++++.++.+|..||+.|-|--=|+.+-|. .=+++.+++++.|
T Consensus 132 d~~~v~~~~~~l~~~gv~avAV~~~fS~~np~--------hE~~v~eii~e~g 176 (176)
T PF05378_consen 132 DEDEVREALRELKDKGVEAVAVSLLFSYRNPE--------HEQRVAEIIREEG 176 (176)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECccCCCCHH--------HHHHHHHHHHhcC
Confidence 68999999999999999999998888888773 2356777777765
No 254
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=32.66 E-value=1.9e+02 Score=25.14 Aligned_cols=50 Identities=12% Similarity=0.082 Sum_probs=38.3
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEE
Q 015723 135 VNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQV 187 (402)
Q Consensus 135 ~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~v 187 (402)
.+-...|+.+|++.+++..=|-.+....+. .+.+.++++.+++.|.++.+
T Consensus 40 ~n~a~~l~~LG~~~~~~~~~~v~i~~~~~~---~~~~~~~~~~~~~~~~~v~~ 89 (196)
T cd00287 40 ANVAVALARLGVSVTLVGADAVVISGLSPA---PEAVLDALEEARRRGVPVVL 89 (196)
T ss_pred HHHHHHHHHCCCcEEEEEccEEEEecccCc---HHHHHHHHHHHHHcCCeEEE
Confidence 455677888899988888447677664444 56899999999999998854
No 255
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=32.48 E-value=77 Score=29.15 Aligned_cols=52 Identities=23% Similarity=0.248 Sum_probs=37.5
Q ss_pred cChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCcee------cchHHHHHHHHHHHc
Q 015723 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVY------NWSGYRRLFQIVREL 181 (402)
Q Consensus 129 ~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Y------dws~Y~~l~~mvr~~ 181 (402)
.+++.+.+..+.++++|+|+|.+.+---.... ..+.| +.....++++.+++.
T Consensus 64 ~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~-~~~~~G~~l~~~~~~~~eii~~v~~~ 121 (231)
T cd02801 64 SDPETLAEAAKIVEELGADGIDLNMGCPSPKV-TKGGAGAALLKDPELVAEIVRAVREA 121 (231)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHH-hCCCeeehhcCCHHHHHHHHHHHHHh
Confidence 36889999999999999999999875321111 11223 777788888888764
No 256
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=32.14 E-value=1.1e+02 Score=31.95 Aligned_cols=78 Identities=19% Similarity=0.253 Sum_probs=46.2
Q ss_pred CCCcccCCCCCCccEEEeeccceeeCCCc-ccChHHHHHHHHHHHHcCcceEEEeee---eeeeecCCCceecchHHHHH
Q 015723 99 KLPERDFAGTPYVPVYVMLPLGIIDMNCE-LVDPEILVNQLKILKSINVDGVMVDCW---WGIVEAHTPQVYNWSGYRRL 174 (402)
Q Consensus 99 ~~~~~~~~~~~~vpvyVMlPLd~V~~~~~-~~~~~~l~~dL~~LK~aGVdgV~vdVW---WGiVE~~~p~~Ydws~Y~~l 174 (402)
+..||.+++.+= ...++. ..+......--|+|.+.|||||.|+-= --++.++ .-..+.+|
T Consensus 34 gsiERGYaG~Si-----------f~~~~~~~~~~~R~~~YARllASiGINgvvlNNVNa~~~~Lt~~-----~l~~v~~l 97 (328)
T PF07488_consen 34 GSIERGYAGKSI-----------FFWDGLPRRDLTRYRDYARLLASIGINGVVLNNVNANPKLLTPE-----YLDKVARL 97 (328)
T ss_dssp S-BTT--SSS-S-----------SEETTEETS--HHHHHHHHHHHHTT--EEE-S-SS--CGGGSTT-----THHHHHHH
T ss_pred CceecccCcccc-----------cccCCCcccchhHHHHHHHHHhhcCCceEEecccccChhhcCHH-----HHHHHHHH
Confidence 566788887641 112222 235578999999999999999998743 2222221 45678899
Q ss_pred HHHHHHcCCeEEEEEeee
Q 015723 175 FQIVRELELKLQVVMSFH 192 (402)
Q Consensus 175 ~~mvr~~GLKv~vvmsFH 192 (402)
++..|..|||+-+.+.|-
T Consensus 98 AdvfRpYGIkv~LSvnFa 115 (328)
T PF07488_consen 98 ADVFRPYGIKVYLSVNFA 115 (328)
T ss_dssp HHHHHHTT-EEEEEE-TT
T ss_pred HHHHhhcCCEEEEEeecc
Confidence 999999999998877773
No 257
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=32.01 E-value=1.2e+02 Score=31.81 Aligned_cols=52 Identities=8% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeecCC-------CceecchHHHHHHHHHHHcCCe-EEEEEee
Q 015723 135 VNQLKILKSINVDGVMVDCWWGIVEAHT-------PQVYNWSGYRRLFQIVRELELK-LQVVMSF 191 (402)
Q Consensus 135 ~~dL~~LK~aGVdgV~vdVWWGiVE~~~-------p~~Ydws~Y~~l~~mvr~~GLK-v~vvmsF 191 (402)
++.|+.||++|++.|.+++ |.-. .+.++.....+.+++++++|++ |.+-|-+
T Consensus 152 ~e~l~~L~~~G~~rvsiGv-----QS~~~~vl~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dli~ 211 (453)
T PRK13347 152 AEMLQALAALGFNRASFGV-----QDFDPQVQKAINRIQPEEMVARAVELLRAAGFESINFDLIY 211 (453)
T ss_pred HHHHHHHHHcCCCEEEECC-----CCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEE
No 258
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=31.82 E-value=71 Score=32.22 Aligned_cols=50 Identities=8% Similarity=0.052 Sum_probs=38.1
Q ss_pred HHHHHHHHHcCcceEEEeee-ee-eeecCCCceecchHHHHHHHHHHHcCCe
Q 015723 135 VNQLKILKSINVDGVMVDCW-WG-IVEAHTPQVYNWSGYRRLFQIVRELELK 184 (402)
Q Consensus 135 ~~dL~~LK~aGVdgV~vdVW-WG-iVE~~~p~~Ydws~Y~~l~~mvr~~GLK 184 (402)
++.|+.||++||+.|.|+|= -. .+-..-.+..+.....+.+++++++|++
T Consensus 98 ~e~l~~l~~~GvnRiSiGvQS~~~~~L~~lgR~~~~~~~~~ai~~lr~~g~~ 149 (350)
T PRK08446 98 KAWLKGMKNLGVNRISFGVQSFNEDKLKFLGRIHSQKQIIKAIENAKKAGFE 149 (350)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCC
Confidence 57899999999999999874 21 1111123457889999999999999986
No 259
>PRK00009 phosphoenolpyruvate carboxylase; Reviewed
Probab=31.75 E-value=41 Score=39.01 Aligned_cols=33 Identities=36% Similarity=0.755 Sum_probs=27.1
Q ss_pred cchHHH---HHHHHHHHcCCeEEEEEeeeccCCCCCCCc
Q 015723 167 NWSGYR---RLFQIVRELELKLQVVMSFHECGGNVGDDV 202 (402)
Q Consensus 167 dws~Y~---~l~~mvr~~GLKv~vvmsFHqCGgNVGDt~ 202 (402)
+|+-|+ ++.++++++|+++.+ ||.+||.||---
T Consensus 581 ~w~l~~Aq~~L~~~~~~~gv~l~~---FhGrGGsv~RGG 616 (911)
T PRK00009 581 NWALYRAQEALVELAEKHGVRLTL---FHGRGGTVGRGG 616 (911)
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEE---ecCCCCCCCCCC
Confidence 677775 567778999999988 999999998653
No 260
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=31.72 E-value=1.1e+02 Score=31.67 Aligned_cols=64 Identities=14% Similarity=0.212 Sum_probs=49.1
Q ss_pred cceeeCCCcccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchH-----HHHHHHHHHHcCCeEEE
Q 015723 119 LGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSG-----YRRLFQIVRELELKLQV 187 (402)
Q Consensus 119 Ld~V~~~~~~~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~-----Y~~l~~mvr~~GLKv~v 187 (402)
+-+|..-|.+.+++++.+--+.+|++|.+.++...| +..-.-|.|.+ |+.+.+.+++.||.+..
T Consensus 94 ~~~IAGPCsiEs~e~~~~~A~~lk~~ga~~~r~~~f-----KpRTsp~sf~G~g~~gL~~L~~~~~~~Gl~v~t 162 (335)
T PRK08673 94 PVVIAGPCSVESEEQILEIARAVKEAGAQILRGGAF-----KPRTSPYSFQGLGEEGLKLLAEAREETGLPIVT 162 (335)
T ss_pred eEEEEecCccCCHHHHHHHHHHHHHhchhhccCcEe-----cCCCCCcccccccHHHHHHHHHHHHHcCCcEEE
Confidence 334455677889999999999999999997776666 21233355555 99999999999999955
No 261
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=31.58 E-value=74 Score=34.79 Aligned_cols=88 Identities=15% Similarity=0.213 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHcCcceEEEeee--ee-eeecCCCceecchHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCcc-----
Q 015723 132 EILVNQLKILKSINVDGVMVDCW--WG-IVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVH----- 203 (402)
Q Consensus 132 ~~l~~dL~~LK~aGVdgV~vdVW--WG-iVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsFHqCGgNVGDt~~----- 203 (402)
-..++.|..|+..|++-|+++|= -- +++. ..+-+-=..=-+..++++++|+|| ++|-=-|-.|.+..
T Consensus 195 ~~~ee~ld~mlkyG~TrVELGVQSiyd~Vl~~-~~RGHtvedv~~a~rLlKd~GfKv----~~HiMpGLPgs~~erDl~~ 269 (515)
T COG1243 195 YIDEEHLDQMLKYGVTRVELGVQSIYDDVLER-TKRGHTVEDVVEATRLLKDAGFKV----GYHIMPGLPGSDFERDLES 269 (515)
T ss_pred ccCHHHHHHHHhcCCcEEEEeeeeHHHHHHHH-hcCCccHHHHHHHHHHHHhcCcEE----EEEecCCCCCCChHHHHHH
Confidence 36788999999999999999984 22 3333 455555556667788999999999 77877777776643
Q ss_pred ----ccCChhhhhhhhcCCCeEeeC
Q 015723 204 ----IPLPQWVMEIGQNNPEIYFTD 224 (402)
Q Consensus 204 ----IpLP~WV~~~g~~~PDI~~tD 224 (402)
+-.|.|-.+.-+-||-+.+.+
T Consensus 270 f~~~f~~p~f~PDmlKIYPtLVi~g 294 (515)
T COG1243 270 FREIFEDPRFRPDMLKIYPTLVIEG 294 (515)
T ss_pred HHHHHhCCCCCCCeEEEeeeEEECC
Confidence 344555544445666665544
No 262
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=30.96 E-value=77 Score=31.77 Aligned_cols=56 Identities=18% Similarity=0.210 Sum_probs=39.5
Q ss_pred HHHHHHHHHcCcc-eEEEeeeee---eeecCCCceecchHHHHHHHHHHHcCCeEEEEEe
Q 015723 135 VNQLKILKSINVD-GVMVDCWWG---IVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMS 190 (402)
Q Consensus 135 ~~dL~~LK~aGVd-gV~vdVWWG---iVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvms 190 (402)
++.|+.||++|++ .|.+++==+ +.+..--..++.+.+.+.+++++++|+++.+.+=
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inKg~t~~~~~~ai~~~~~~Gi~v~~~~i 176 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGLETANDRIREKSINKGSTFEDFIRAAELARKYGAGVKAYLL 176 (313)
T ss_pred HHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhCCCCCHHHHHHHHHHHHHcCCcEEEEEE
Confidence 5778889999998 788875311 1110012345788999999999999999876444
No 263
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=30.95 E-value=1.5e+02 Score=28.29 Aligned_cols=56 Identities=21% Similarity=0.308 Sum_probs=39.0
Q ss_pred ccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecc-hHHHHHHHHHHHcCCeEEEEEeeecc
Q 015723 128 LVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNW-SGYRRLFQIVRELELKLQVVMSFHEC 194 (402)
Q Consensus 128 ~~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydw-s~Y~~l~~mvr~~GLKv~vvmsFHqC 194 (402)
+.+.+.....|+.++++||..+ |+. +.. +. ...+.+.+++++.|+.+.+..++|.+
T Consensus 28 ~~~~~~~~~~~~~~~~~Gvtti--------v~~-~~~--~~~~~~~~~~~~~~~~g~~v~~~~G~hp~ 84 (293)
T cd00530 28 LADVEAAKEELKRFRAHGGRTI--------VDA-TPP--GIGRDVEKLAEVARATGVNIVAATGFYKD 84 (293)
T ss_pred hhhHHHHHHHHHHHHHcCCCeE--------EEc-CCc--ccCcCHHHHHHHHHHhCCcEEEecccCCC
Confidence 4456788889999999999877 222 111 11 12366778888899999888888843
No 264
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=30.83 E-value=95 Score=25.58 Aligned_cols=50 Identities=14% Similarity=0.050 Sum_probs=37.8
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeee---cCCCceecchHHHHHHHHHHHcCCe
Q 015723 135 VNQLKILKSINVDGVMVDCWWGIVE---AHTPQVYNWSGYRRLFQIVRELELK 184 (402)
Q Consensus 135 ~~dL~~LK~aGVdgV~vdVWWGiVE---~~~p~~Ydws~Y~~l~~mvr~~GLK 184 (402)
.+.|+.|+++|++-|.+++-=..=| ..-....+|+-..+.++.++++|++
T Consensus 90 ~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~ 142 (166)
T PF04055_consen 90 EELLDELKKLGVDRIRISLESLDEESVLRIINRGKSFERVLEALERLKEAGIP 142 (166)
T ss_dssp HHHHHHHHHTTCSEEEEEEBSSSHHHHHHHHSSTSHHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHhcCccEEecccccCCHHHhhhhhcCCCCHHHHHHHHHHHHHcCCC
Confidence 8899999999988888876511111 1011457899999999999999999
No 265
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=30.53 E-value=81 Score=34.33 Aligned_cols=54 Identities=9% Similarity=0.075 Sum_probs=41.0
Q ss_pred HHHHHHHHHHcCcceEEEeee--eeeeecCCCceecchHHHHHHHHHHHcCCeEEE
Q 015723 134 LVNQLKILKSINVDGVMVDCW--WGIVEAHTPQVYNWSGYRRLFQIVRELELKLQV 187 (402)
Q Consensus 134 l~~dL~~LK~aGVdgV~vdVW--WGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~v 187 (402)
=.+.|+.||++|++-|.++|= --.|-..-...++.....+.+++++++|+++.+
T Consensus 205 ~~e~L~~L~~~G~~rVslGVQS~~d~VL~~inRght~~~v~~Ai~~lr~~G~~v~~ 260 (522)
T TIGR01211 205 REEHIDRMLKLGATRVELGVQTIYNDILERTKRGHTVRDVVEATRLLRDAGLKVVY 260 (522)
T ss_pred CHHHHHHHHHcCCCEEEEECccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeEEE
Confidence 357799999999999999873 112212235567888899999999999999754
No 266
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=30.27 E-value=94 Score=32.95 Aligned_cols=52 Identities=17% Similarity=0.358 Sum_probs=26.3
Q ss_pred CcccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceec-----------chHHHHHHHHHHHcCCeE
Q 015723 126 CELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYN-----------WSGYRRLFQIVRELELKL 185 (402)
Q Consensus 126 ~~~~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Yd-----------ws~Y~~l~~mvr~~GLKv 185 (402)
+.+=+.+.+++--+.+.++|.+ |..||. -|=.-+ -..|++.++-+-++|+|+
T Consensus 37 gevW~~~~i~~~k~~ie~~GL~-------~~vvEs-~pv~e~Ik~g~~~rd~~Ienyk~~irNla~~GI~v 99 (394)
T TIGR00695 37 GEVWEKEEIRKRKEYIESAGLH-------WSVVES-VPVHEAIKTGTGNYGRWIENYKQTLRNLAQCGIKT 99 (394)
T ss_pred CCCCCHHHHHHHHHHHHHcCCe-------EEEEeC-CCccHHHHcCCCcHHHHHHHHHHHHHHHHHcCCCE
Confidence 3444555555555555555522 555554 221112 245556666666666666
No 267
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=30.21 E-value=82 Score=32.11 Aligned_cols=55 Identities=7% Similarity=0.106 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCcceEEEeee--eeeeecCCCceecchHHHHHHHHHHHcCCe-EEEEE
Q 015723 135 VNQLKILKSINVDGVMVDCW--WGIVEAHTPQVYNWSGYRRLFQIVRELELK-LQVVM 189 (402)
Q Consensus 135 ~~dL~~LK~aGVdgV~vdVW--WGiVE~~~p~~Ydws~Y~~l~~mvr~~GLK-v~vvm 189 (402)
.+.|+.||++||+.|.+++= =-.+=..-.+.++...+.+.+++++++|++ +.+-|
T Consensus 103 ~e~l~~lk~~G~nrisiGvQS~~d~vL~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dl 160 (353)
T PRK05904 103 QSQINLLKKNKVNRISLGVQSMNNNILKQLNRTHTIQDSKEAINLLHKNGIYNISCDF 160 (353)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEE
No 268
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=30.01 E-value=1.5e+02 Score=32.81 Aligned_cols=52 Identities=10% Similarity=-0.004 Sum_probs=39.0
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEEEEee
Q 015723 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSF 191 (402)
Q Consensus 130 ~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsF 191 (402)
+.+.++.++++.+++||+.|++-.-...+ .-..+.++.++++|+.+++.+|+
T Consensus 89 pddvv~~~v~~a~~~Gvd~irif~~lnd~----------~n~~~~i~~ak~~G~~v~~~i~~ 140 (582)
T TIGR01108 89 ADDVVERFVKKAVENGMDVFRIFDALNDP----------RNLQAAIQAAKKHGAHAQGTISY 140 (582)
T ss_pred chhhHHHHHHHHHHCCCCEEEEEEecCcH----------HHHHHHHHHHHHcCCEEEEEEEe
Confidence 45678888888888999888776554332 34777888888999888876664
No 269
>PRK03195 hypothetical protein; Provisional
Probab=29.89 E-value=1.2e+02 Score=29.09 Aligned_cols=109 Identities=16% Similarity=0.305 Sum_probs=62.4
Q ss_pred CCceecchHHHHHHHH-HHHcCCeEEEEEeeeccCCCCCCCccccCChhhhhhh-----hcCCCeEeeCCCCCcccccee
Q 015723 162 TPQVYNWSGYRRLFQI-VRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIG-----QNNPEIYFTDREGRRNSECLT 235 (402)
Q Consensus 162 ~p~~Ydws~Y~~l~~m-vr~~GLKv~vvmsFHqCGgNVGDt~~IpLP~WV~~~g-----~~~PDI~~tDr~G~rn~E~LS 235 (402)
++.--|-..+.++++. +++.|+.-.+ .++. + +=.|-.=.| ...|.-| . ...|.
T Consensus 66 ~~~~rdPq~Lg~il~~l~~~~gW~~~l--~~~~----------V-~~~W~~IVG~~IA~ht~P~~i-~-------~gvL~ 124 (186)
T PRK03195 66 GPDIRDPQPLGALARDLAKKRGWSAKV--AEGT----------V-LGQWSAVVGEQIAAHATPTAL-N-------DGVLS 124 (186)
T ss_pred CCCCCCcccHHHHHHHHHHhcCchhhh--hHhH----------H-HHHhHHHHCHHHHhhcceeEE-E-------CCEEE
Confidence 4445677778777764 4788886544 3211 1 223422111 2222222 2 23445
Q ss_pred cccCcccccCCCCchHHHHHHHHHHHHHHhhhhcCceEEEEEeeccCCCccCCCCCCCCCC-CccCCCcc
Q 015723 236 WGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRYPTYPAKHG-WKYPGIGE 304 (402)
Q Consensus 236 l~~D~~pvl~GRtp~~~Y~dfm~sF~~~fa~~~~~~vI~eI~VGlGP~GELRYPSyp~~~g-W~~pGiGE 304 (402)
+.||.-.. .+.-+-....+.+++.+++|.++|.+|-| +||.+ ||. ..| |+++|.|-
T Consensus 125 V~~~SsaW------AteL~~~k~~Ii~rLN~~lG~~vV~~I~i-~GP~~----psw--~~g~~~v~grGp 181 (186)
T PRK03195 125 VSAESTAW------ATQLRMMQAQLLAKIAAAVGDGVVTSLKI-TGPAA----PSW--RKGPRHIAGRGP 181 (186)
T ss_pred EEeCCHHH------HHHHHhhHHHHHHHHHHHhCccceeEEEE-eCCCC----CCC--CcCCCcCCCCCC
Confidence 55543111 34555566788899999999999999987 67864 333 234 78888773
No 270
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=29.65 E-value=1.5e+02 Score=28.79 Aligned_cols=57 Identities=12% Similarity=0.114 Sum_probs=40.8
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCce--ecchHHHHHHHHHHHc-CCeEEE
Q 015723 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQV--YNWSGYRRLFQIVREL-ELKLQV 187 (402)
Q Consensus 130 ~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~--Ydws~Y~~l~~mvr~~-GLKv~v 187 (402)
+.+.+.+-.+.++++|+|+|+++..--.... .... -+.....++++.++++ ++.|.+
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~-~g~~~~~~~~~~~eiv~~vr~~~~~Pv~v 159 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNISCPNVKG-GGMAFGTDPEAVAEIVKAVKKATDVPVIV 159 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCCCC-CcccccCCHHHHHHHHHHHHhccCCCEEE
Confidence 5788999999999999999999976333222 1111 2557788889999887 665544
No 271
>TIGR00620 sporelyase spore photoproduct lyase. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=29.51 E-value=99 Score=29.85 Aligned_cols=32 Identities=9% Similarity=0.011 Sum_probs=23.1
Q ss_pred chHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCccccCChhh
Q 015723 168 WSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWV 210 (402)
Q Consensus 168 ws~Y~~l~~mvr~~GLKv~vvmsFHqCGgNVGDt~~IpLP~WV 210 (402)
...=.+.+..+.++|.+|.++++ |-|..|.|-
T Consensus 70 l~~Rl~Aa~k~a~aGy~Vg~~~~-----------PIi~~egW~ 101 (199)
T TIGR00620 70 LDKRIEAAVKVAKAGYPLGFIIA-----------PIYIHEGWK 101 (199)
T ss_pred HHHHHHHHHHHHHcCCeEEEEee-----------ceEeeCChH
Confidence 33445566677789999988444 888888884
No 272
>PRK02227 hypothetical protein; Provisional
Probab=29.44 E-value=80 Score=31.36 Aligned_cols=48 Identities=15% Similarity=0.083 Sum_probs=37.1
Q ss_pred HHHHHHHHcCcceEEEeeeeeeeecCCCc---eecchHHHHHHHHHHHcCCeEEE
Q 015723 136 NQLKILKSINVDGVMVDCWWGIVEAHTPQ---VYNWSGYRRLFQIVRELELKLQV 187 (402)
Q Consensus 136 ~dL~~LK~aGVdgV~vdVWWGiVE~~~p~---~Ydws~Y~~l~~mvr~~GLKv~v 187 (402)
.-+..++++|++|+|+|-+ ++.+-. .+++..+.+.++++|++||+.-+
T Consensus 135 ~l~~~a~~aGf~g~MlDTa----~Kdg~~Lfd~l~~~~L~~Fv~~ar~~Gl~~gL 185 (238)
T PRK02227 135 SLPAIAADAGFDGAMLDTA----IKDGKSLFDHMDEEELAEFVAEARSHGLMSAL 185 (238)
T ss_pred HHHHHHHHcCCCEEEEecc----cCCCcchHhhCCHHHHHHHHHHHHHcccHhHh
Confidence 4567889999999999965 443322 35678888999999999999833
No 273
>PRK05926 hypothetical protein; Provisional
Probab=29.44 E-value=50 Score=34.10 Aligned_cols=58 Identities=17% Similarity=0.193 Sum_probs=40.9
Q ss_pred HHHHHHHHHHcCcceEEEe---ee-eeeeecCCCceecchHHHHHHHHHHHcCCeEEEEEee
Q 015723 134 LVNQLKILKSINVDGVMVD---CW-WGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSF 191 (402)
Q Consensus 134 l~~dL~~LK~aGVdgV~vd---VW-WGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsF 191 (402)
.++.|+.||+||++.+-.. .. --+-+.-.|++-....+.+.+++++++||++..-|=|
T Consensus 168 ~~e~l~~LkeAGl~~~~g~GaEi~~e~~r~~~~p~~~t~~e~l~~i~~a~~~Gi~~~sgmi~ 229 (370)
T PRK05926 168 VKEVLQTLKIAGLDSIPGGGAEILVDEIRETLAPGRLSSQGFLEIHKTAHSLGIPSNATMLC 229 (370)
T ss_pred HHHHHHHHHHcCcCccCCCCchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCcccCceEE
Confidence 4777999999999877643 11 1112222356667778899999999999999665544
No 274
>cd08572 GDPD_GDE5_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. GDE5 is widely expressed in mammalian tissues, with highest expression in spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=29.40 E-value=1.5e+02 Score=29.38 Aligned_cols=68 Identities=18% Similarity=0.088 Sum_probs=40.1
Q ss_pred HHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCccccCChhhhhh
Q 015723 134 LVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEI 213 (402)
Q Consensus 134 l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsFHqCGgNVGDt~~IpLP~WV~~~ 213 (402)
+..-+..+|..|++++.+...+..+- .++++.++++||+|.+ .+ |+. -=|.-+...
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~~~~Gl~v~~--wT------v~~----n~~~~~~~l 280 (293)
T cd08572 225 LQAAVNFALAEGLLGVVLHAEDLLKN------------PSLISLVKALGLVLFT--YG------DDN----NDPENVKKQ 280 (293)
T ss_pred HHHHHHHHHHCCCeEEEechHHhhcC------------cHHHHHHHHcCcEEEE--EC------CCC----CCHHHHHHH
Confidence 44455566777777766554443221 4899999999999977 53 100 123333322
Q ss_pred hhcCCCeEeeCC
Q 015723 214 GQNNPEIYFTDR 225 (402)
Q Consensus 214 g~~~PDI~~tDr 225 (402)
.+..-|-++||+
T Consensus 281 ~~~GVdgIiTD~ 292 (293)
T cd08572 281 KELGVDGVIYDR 292 (293)
T ss_pred HHcCCCEEEecC
Confidence 345567777775
No 275
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=29.33 E-value=51 Score=34.18 Aligned_cols=54 Identities=20% Similarity=0.266 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCcceEEE-----eeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEEEEeeeccCCCCC
Q 015723 135 VNQLKILKSINVDGVMV-----DCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVG 199 (402)
Q Consensus 135 ~~dL~~LK~aGVdgV~v-----dVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsFHqCGgNVG 199 (402)
.++++.||++||+.+-- ..+-..|=+.. -|..=.+.+++++++||++ | |||-||
T Consensus 144 ~eq~~~L~~aGvd~ynhNLeTs~~~y~~I~tt~----t~edR~~tl~~vk~~Gi~v----c---sGgI~G 202 (335)
T COG0502 144 EEQAEKLADAGVDRYNHNLETSPEFYENIITTR----TYEDRLNTLENVREAGIEV----C---SGGIVG 202 (335)
T ss_pred HHHHHHHHHcChhheecccccCHHHHcccCCCC----CHHHHHHHHHHHHHcCCcc----c---cceEec
No 276
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=29.30 E-value=81 Score=29.74 Aligned_cols=54 Identities=7% Similarity=0.157 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceec--chHHHHHHHHHHHcCCeE
Q 015723 132 EILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYN--WSGYRRLFQIVRELELKL 185 (402)
Q Consensus 132 ~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Yd--ws~Y~~l~~mvr~~GLKv 185 (402)
+.+++.++..+.+|+..|.+.-+..-.+...+..++ -+.++++.+++++.|+++
T Consensus 90 ~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l 145 (275)
T PRK09856 90 DMIKLAMDMAKEMNAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAENIGMDL 145 (275)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEE
Confidence 577788899999999999774432111111112222 246889999999999988
No 277
>PF11193 DUF2812: Protein of unknown function (DUF2812); InterPro: IPR021359 This is a bacterial family of uncharacterised proteins, however some members of this family are annotated as membrane proteins.
Probab=29.29 E-value=2.8e+02 Score=23.26 Aligned_cols=57 Identities=11% Similarity=0.085 Sum_probs=48.2
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCcee----cc------hHHHHHHHHHHHcCCeEE
Q 015723 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVY----NW------SGYRRLFQIVRELELKLQ 186 (402)
Q Consensus 130 ~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Y----dw------s~Y~~l~~mvr~~GLKv~ 186 (402)
+.+..++-|..|.+-|=.-+.+..+.-..|+..|.++ |+ ....+..++++++|-+++
T Consensus 2 ~~~~~E~wL~ema~kGw~l~~~~~~~~~F~k~ep~~~~Y~vd~~~~~~~~~~~~y~~~~e~~GW~~v 68 (115)
T PF11193_consen 2 DYDKEEQWLNEMAAKGWHLKKIGGFGYTFEKGEPKDYRYRVDFNDPKSKEEQKEYLEFFEEAGWEYV 68 (115)
T ss_pred ChHHHHHHHHHHHHCCCeEEEecceEEEEEECCCceEEEEEEEccccchhhhHHHHHHHHHCCCEEE
Confidence 4578899999999999999999999777777677765 33 377899999999999996
No 278
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=29.00 E-value=4.1e+02 Score=26.20 Aligned_cols=129 Identities=18% Similarity=0.121 Sum_probs=69.7
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHH------------------HHHHHHHHcCCeEEEEEee
Q 015723 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYR------------------RLFQIVRELELKLQVVMSF 191 (402)
Q Consensus 130 ~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~------------------~l~~mvr~~GLKv~vvmsF 191 (402)
+++.+.+.++.++++|+++|.+.+--- .++ ...+|...+ +.+..+.++|.+.+. .
T Consensus 127 ~~~~~~~~i~~~~~~g~~~i~l~~~~p-~~~---~~~~~~~i~~l~~~~~~pvivK~v~s~~~a~~a~~~G~d~I~---v 199 (299)
T cd02809 127 DREITEDLLRRAEAAGYKALVLTVDTP-VLG---RRLTWDDLAWLRSQWKGPLILKGILTPEDALRAVDAGADGIV---V 199 (299)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCC-CCC---CCCCHHHHHHHHHhcCCCEEEeecCCHHHHHHHHHCCCCEEE---E
Confidence 567788888999999999988866311 111 113333222 223445566666543 3
Q ss_pred eccCCCCCCCccccCChhhhhhhhcCC-CeEeeCCCCCccc----cceecccCcccccCCCCch--------HHHHHHHH
Q 015723 192 HECGGNVGDDVHIPLPQWVMEIGQNNP-EIYFTDREGRRNS----ECLTWGIDKERVLRGRTAV--------EVYFDYMR 258 (402)
Q Consensus 192 HqCGgNVGDt~~IpLP~WV~~~g~~~P-DI~~tDr~G~rn~----E~LSl~~D~~pvl~GRtp~--------~~Y~dfm~ 258 (402)
|.+||-..|. .++....+.++.+.-+ ++-..=.-|-++. ++|.+|+|-+ .-||.-+ +--.++++
T Consensus 200 ~~~gG~~~~~-g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lGAd~V--~ig~~~l~~~~~~g~~~v~~~i~ 276 (299)
T cd02809 200 SNHGGRQLDG-APATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAV--LIGRPFLYGLAAGGEAGVAHVLE 276 (299)
T ss_pred cCCCCCCCCC-CcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEE--EEcHHHHHHHHhcCHHHHHHHHH
Confidence 3456644332 2223334444433332 4444444555555 7888999974 3355332 12235677
Q ss_pred HHHHHHhhhh
Q 015723 259 SFRVEFNEFF 268 (402)
Q Consensus 259 sF~~~fa~~~ 268 (402)
.+++++...+
T Consensus 277 ~l~~el~~~m 286 (299)
T cd02809 277 ILRDELERAM 286 (299)
T ss_pred HHHHHHHHHH
Confidence 7777766654
No 279
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=28.93 E-value=5.6e+02 Score=25.71 Aligned_cols=86 Identities=14% Similarity=0.320 Sum_probs=55.7
Q ss_pred ChHHHHHHHHHHHHcC--cceEEEeeeeeeeecCCCc-----ee-----cchHHHHHHHHHHHcCCeEEEEEeeeccCCC
Q 015723 130 DPEILVNQLKILKSIN--VDGVMVDCWWGIVEAHTPQ-----VY-----NWSGYRRLFQIVRELELKLQVVMSFHECGGN 197 (402)
Q Consensus 130 ~~~~l~~dL~~LK~aG--VdgV~vdVWWGiVE~~~p~-----~Y-----dws~Y~~l~~mvr~~GLKv~vvmsFHqCGgN 197 (402)
+.+.+.+-++.+++.| +|+|.+|.|=...+. ..+ .| .|.-.+++++.+++.|+|+++++-
T Consensus 21 s~~~v~~~~~~~~~~~iP~d~i~lddw~~~~~~-~~g~~~~~~f~~d~~~FPdp~~mi~~Lh~~G~~~~~~i~------- 92 (317)
T cd06594 21 GTDKVLEALEKARAAGVKVAGLWLQDWTGRRET-SFGDRLWWNWEWDPERYPGLDELIEELKARGIRVLTYIN------- 92 (317)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEccccCcccc-cccceeeeeeEEChhhCCCHHHHHHHHHHCCCEEEEEec-------
Confidence 6788899999999975 578888866111121 112 12 345679999999999999977544
Q ss_pred CCCCcccc--CChhhhhhhhcCCCeEeeCCCCCc
Q 015723 198 VGDDVHIP--LPQWVMEIGQNNPEIYFTDREGRR 229 (402)
Q Consensus 198 VGDt~~Ip--LP~WV~~~g~~~PDI~~tDr~G~r 229 (402)
|.|. -+.. -+.+. .-+.++++.+|..
T Consensus 93 ----P~v~~~~~~~-y~~~~-~~g~~vk~~~g~~ 120 (317)
T cd06594 93 ----PYLADDGPLY-YEEAK-DAGYLVKDADGSP 120 (317)
T ss_pred ----CceecCCchh-HHHHH-HCCeEEECCCCCe
Confidence 2222 1222 23343 3478999998864
No 280
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=28.76 E-value=2e+02 Score=21.58 Aligned_cols=53 Identities=11% Similarity=0.092 Sum_probs=39.7
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCc--eecchHHHHHHHHHHHcCCeEE
Q 015723 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQ--VYNWSGYRRLFQIVRELELKLQ 186 (402)
Q Consensus 130 ~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~--~Ydws~Y~~l~~mvr~~GLKv~ 186 (402)
.+..+.+=++.|.++|++...+-+ .+....+ +.+..-.+++.+.++++|+++.
T Consensus 11 ~pG~La~v~~~l~~~~inI~~i~~----~~~~~~~~~rl~~~~~~~~~~~L~~~G~~v~ 65 (66)
T cd04908 11 KPGRLAAVTEILSEAGINIRALSI----ADTSEFGILRLIVSDPDKAKEALKEAGFAVK 65 (66)
T ss_pred CCChHHHHHHHHHHCCCCEEEEEE----EecCCCCEEEEEECCHHHHHHHHHHCCCEEE
Confidence 466899999999999999988875 2221123 3455566789999999999974
No 281
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=28.61 E-value=1.6e+02 Score=29.39 Aligned_cols=105 Identities=13% Similarity=0.064 Sum_probs=67.4
Q ss_pred CCCcccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCcc
Q 015723 124 MNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVH 203 (402)
Q Consensus 124 ~~~~~~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsFHqCGgNVGDt~~ 203 (402)
--|.+..++.+.+--+.+|++|+..++-..|==.--+.+-+-....+++.|.+.+++.||.+.. ..|
T Consensus 21 GPC~vEs~e~~~~~a~~~~~~g~~~~r~g~~kpRts~~sf~G~G~~gl~~L~~~~~~~Gl~~~T--ev~----------- 87 (250)
T PRK13397 21 GPCSIESYDHIRLAASSAKKLGYNYFRGGAYKPRTSAASFQGLGLQGIRYLHEVCQEFGLLSVS--EIM----------- 87 (250)
T ss_pred ccCccCCHHHHHHHHHHHHHcCCCEEEecccCCCCCCcccCCCCHHHHHHHHHHHHHcCCCEEE--eeC-----------
Confidence 3467788999998889999999999999888411111111111235799999999999999955 433
Q ss_pred ccCChhhhhhhhcCCCeEeeCCCCCcccccee-cccCccccc
Q 015723 204 IPLPQWVMEIGQNNPEIYFTDREGRRNSECLT-WGIDKERVL 244 (402)
Q Consensus 204 IpLP~WV~~~g~~~PDI~~tDr~G~rn~E~LS-l~~D~~pvl 244 (402)
-|.-+....+ +.|++-.=-.=-+|.+.|- .+--..||+
T Consensus 88 --d~~~v~~~~e-~vdilqIgs~~~~n~~LL~~va~tgkPVi 126 (250)
T PRK13397 88 --SERQLEEAYD-YLDVIQVGARNMQNFEFLKTLSHIDKPIL 126 (250)
T ss_pred --CHHHHHHHHh-cCCEEEECcccccCHHHHHHHHccCCeEE
Confidence 2222222223 6787755444445555554 444556775
No 282
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=28.48 E-value=83 Score=31.97 Aligned_cols=60 Identities=20% Similarity=0.206 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCccc
Q 015723 133 ILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHI 204 (402)
Q Consensus 133 ~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsFHqCGgNVGDt~~I 204 (402)
.+++=...|+++|++.. ++.-+|++ | +.+..+++++++++.+...++-+. ||.|-|+..+
T Consensus 40 ~~~~v~~~L~~~g~~~~----~~~~v~~~-p---~~~~v~~~~~~~~~~~~D~IIavG----GGSviD~AK~ 99 (375)
T cd08179 40 FLDKVEAYLKEAGIEVE----VFEGVEPD-P---SVETVLKGAEAMREFEPDWIIALG----GGSPIDAAKA 99 (375)
T ss_pred hHHHHHHHHHHcCCeEE----EeCCCCCC-c---CHHHHHHHHHHHHhcCCCEEEEeC----CccHHHHHHH
Confidence 44444556788888643 34455542 2 788899999999999999877444 7788888753
No 283
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=28.45 E-value=1.2e+02 Score=30.73 Aligned_cols=49 Identities=10% Similarity=0.112 Sum_probs=38.2
Q ss_pred HHHHHHHHHcCcceEEEeee---eeeeecCCCceecchHHHHHHHHHHHcCCe
Q 015723 135 VNQLKILKSINVDGVMVDCW---WGIVEAHTPQVYNWSGYRRLFQIVRELELK 184 (402)
Q Consensus 135 ~~dL~~LK~aGVdgV~vdVW---WGiVE~~~p~~Ydws~Y~~l~~mvr~~GLK 184 (402)
.+.|++||++|++.|.+++= --+.+. -.+.+++....+.+++++++|++
T Consensus 100 ~e~l~~l~~~G~~rvsiGvqS~~~~~l~~-l~r~~~~~~~~~~i~~l~~~g~~ 151 (377)
T PRK08599 100 KEKLQVLKDSGVNRISLGVQTFNDELLKK-IGRTHNEEDVYEAIANAKKAGFD 151 (377)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHH-cCCCCCHHHHHHHHHHHHHcCCC
Confidence 46789999999999999863 222222 24567888999999999999987
No 284
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=28.12 E-value=1.5e+02 Score=29.72 Aligned_cols=58 Identities=12% Similarity=0.137 Sum_probs=42.3
Q ss_pred ccChHHHHHHHHHHHHcC--cceEEEeeeeeeeecCCCceecch-----HHHHHHHHHHHcCCeEEEEE
Q 015723 128 LVDPEILVNQLKILKSIN--VDGVMVDCWWGIVEAHTPQVYNWS-----GYRRLFQIVRELELKLQVVM 189 (402)
Q Consensus 128 ~~~~~~l~~dL~~LK~aG--VdgV~vdVWWGiVE~~~p~~Ydws-----~Y~~l~~mvr~~GLKv~vvm 189 (402)
..+.+.+.+-++.+++.| +++|.+|.-|- .+.+.|+|. --+++++.+++.|+||++++
T Consensus 20 y~~~~ev~~~~~~~~~~~iP~d~i~lD~~~~----~~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~ 84 (339)
T cd06603 20 YKDQEDVKEVDAGFDEHDIPYDVIWLDIEHT----DGKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIV 84 (339)
T ss_pred CCCHHHHHHHHHHHHHcCCCceEEEEChHHh----CCCCceEeCcccCCCHHHHHHHHHHCCCEEEEEe
Confidence 456788889999998866 57888887542 134556554 35679999999999997744
No 285
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=27.90 E-value=1.1e+02 Score=27.95 Aligned_cols=83 Identities=17% Similarity=0.252 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEEEEeeeccCCC--CCCCccccCCh
Q 015723 131 PEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGN--VGDDVHIPLPQ 208 (402)
Q Consensus 131 ~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsFHqCGgN--VGDt~~IpLP~ 208 (402)
+++.++-.+.+++.|+-||.+..-.+-.-+..+.. ++++++.+.++|+-|. +| ||.+ ...+.....|.
T Consensus 84 ~~~~~~l~~~~~~~g~~Gv~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~pv~----~H-~g~~~~~~~~~~~~~~~ 153 (273)
T PF04909_consen 84 EDAVEELERALQELGFRGVKLHPDLGGFDPDDPRL-----DDPIFEAAEELGLPVL----IH-TGMTGFPDAPSDPADPE 153 (273)
T ss_dssp HHHHHHHHHHHHTTTESEEEEESSETTCCTTSGHC-----HHHHHHHHHHHT-EEE----EE-ESHTHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhccccceeeeEecCCCCccccccHHH-----HHHHHHHHHhhcccee----ee-ccccchhhhhHHHHHHH
Confidence 35777777777799999999887654444322222 2899999999998663 45 1200 00011122333
Q ss_pred hhhhhhhcCCCeEee
Q 015723 209 WVMEIGQNNPEIYFT 223 (402)
Q Consensus 209 WV~~~g~~~PDI~~t 223 (402)
=+.+.-+++|++-+.
T Consensus 154 ~~~~~~~~~P~l~ii 168 (273)
T PF04909_consen 154 ELEELLERFPDLRII 168 (273)
T ss_dssp HHTTHHHHSTTSEEE
T ss_pred HHHHHHHHhcCCeEE
Confidence 344456788885443
No 286
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=27.79 E-value=60 Score=30.20 Aligned_cols=23 Identities=39% Similarity=0.476 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHcCcceEEEeee
Q 015723 132 EILVNQLKILKSINVDGVMVDCW 154 (402)
Q Consensus 132 ~~l~~dL~~LK~aGVdgV~vdVW 154 (402)
+++++-|+.|+++||+||+|.-.
T Consensus 2 ~~~~~~l~~l~~~g~dgi~v~~~ 24 (233)
T PF01136_consen 2 EELEKYLDKLKELGVDGILVSNP 24 (233)
T ss_pred hHHHHHHHHHHhCCCCEEEEcCH
Confidence 57899999999999999999765
No 287
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=27.72 E-value=95 Score=29.49 Aligned_cols=53 Identities=9% Similarity=0.229 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHcCcceEEEeee-eeeeecCCCceec--chHHHHHHHHHHHcCCeE
Q 015723 132 EILVNQLKILKSINVDGVMVDCW-WGIVEAHTPQVYN--WSGYRRLFQIVRELELKL 185 (402)
Q Consensus 132 ~~l~~dL~~LK~aGVdgV~vdVW-WGiVE~~~p~~Yd--ws~Y~~l~~mvr~~GLKv 185 (402)
+.+++.|+..+.+|+..|.+.-+ +. .+...+..++ -..++++.++++++|+++
T Consensus 99 ~~~~~~i~~a~~lG~~~i~~~~~~~~-~~~~~~~~~~~~~~~l~~l~~~A~~~GV~i 154 (283)
T PRK13209 99 EIMRKAIQLAQDLGIRVIQLAGYDVY-YEQANNETRRRFIDGLKESVELASRASVTL 154 (283)
T ss_pred HHHHHHHHHHHHcCCCEEEECCcccc-ccccHHHHHHHHHHHHHHHHHHHHHhCCEE
Confidence 46788999999999999987422 11 1110111111 245688999999999888
No 288
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=27.59 E-value=1.2e+02 Score=26.58 Aligned_cols=53 Identities=21% Similarity=0.236 Sum_probs=33.1
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHH---cCCeEEE
Q 015723 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRE---LELKLQV 187 (402)
Q Consensus 130 ~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~---~GLKv~v 187 (402)
..+...+..+..+++|+|+|++..-++..-. + +.....+.++.+.+ .++.+.+
T Consensus 63 ~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~-~----~~~~~~~~~~~i~~~~~~~~pv~i 118 (201)
T cd00945 63 TTEVKVAEVEEAIDLGADEIDVVINIGSLKE-G----DWEEVLEEIAAVVEAADGGLPLKV 118 (201)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEeccHHHHhC-C----CHHHHHHHHHHHHHHhcCCceEEE
Confidence 3567788889999999999999755432211 1 23444444444444 4887755
No 289
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=27.58 E-value=77 Score=31.10 Aligned_cols=57 Identities=14% Similarity=0.157 Sum_probs=38.9
Q ss_pred cccChHHHHHHHHHHHHcCcceEEEeee-eeeeecCCCceecchHHHHHHHHHHHcCCeEEEEEeeeccCCCCC
Q 015723 127 ELVDPEILVNQLKILKSINVDGVMVDCW-WGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVG 199 (402)
Q Consensus 127 ~~~~~~~l~~dL~~LK~aGVdgV~vdVW-WGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsFHqCGgNVG 199 (402)
.+.+...++ +.+++-++++|.+|+- +|-+ +...+++++++++|+++++ +.| |.+++|
T Consensus 236 ~~~~~~~~~---~~~~~~~~d~v~~~~~~~GGi----------~~~~~~~~~a~~~gi~~~~--~~~-~~~~i~ 293 (316)
T cd03319 236 SCFSAADAA---RLAGGGAYDGINIKLMKTGGL----------TEALRIADLARAAGLKVMV--GCM-VESSLS 293 (316)
T ss_pred CCCCHHHHH---HHHhcCCCCEEEEeccccCCH----------HHHHHHHHHHHHcCCCEEE--ECc-hhhHHH
Confidence 444444443 5577789999999977 3333 3358999999999999955 443 355444
No 290
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=27.44 E-value=1.4e+02 Score=31.17 Aligned_cols=50 Identities=8% Similarity=0.103 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeecCCCce---------ecchHHHHHHHHHHHcCC---eEEEEEee
Q 015723 135 VNQLKILKSINVDGVMVDCWWGIVEAHTPQV---------YNWSGYRRLFQIVRELEL---KLQVVMSF 191 (402)
Q Consensus 135 ~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~---------Ydws~Y~~l~~mvr~~GL---Kv~vvmsF 191 (402)
++.|+.||++|++.|.|++ ++-.. .+++...+.+++++++|+ .+.+|+.+
T Consensus 151 ~e~l~~lk~~G~~risiGv-------qS~~~~~l~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~Gl 212 (455)
T TIGR00538 151 KDVIDALRDEGFNRLSFGV-------QDFNKEVQQAVNRIQPEEMIFELMNHAREAGFTSINIDLIYGL 212 (455)
T ss_pred HHHHHHHHHcCCCEEEEcC-------CCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEeeC
No 291
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=27.30 E-value=1.5e+02 Score=27.09 Aligned_cols=43 Identities=12% Similarity=-0.011 Sum_probs=34.0
Q ss_pred HHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEEEEe
Q 015723 137 QLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMS 190 (402)
Q Consensus 137 dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvms 190 (402)
+++.++++|+|.|.+....+ . ..-.++++.+++.|+++.+-|.
T Consensus 68 ~~~~~~~~Gad~i~vh~~~~-------~----~~~~~~i~~~~~~g~~~~~~~~ 110 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVAD-------D----ATIKGAVKAAKKHGKEVQVDLI 110 (206)
T ss_pred HHHHHHHcCCCEEEEeccCC-------H----HHHHHHHHHHHHcCCEEEEEec
Confidence 78889999999999986532 1 2347899999999999988543
No 292
>PRK05660 HemN family oxidoreductase; Provisional
Probab=27.30 E-value=1.3e+02 Score=30.82 Aligned_cols=47 Identities=9% Similarity=0.165 Sum_probs=37.4
Q ss_pred HHHHHHHHHHcCcceEEEeeeeeeeecCCC-------ceecchHHHHHHHHHHHcCCeE
Q 015723 134 LVNQLKILKSINVDGVMVDCWWGIVEAHTP-------QVYNWSGYRRLFQIVRELELKL 185 (402)
Q Consensus 134 l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p-------~~Ydws~Y~~l~~mvr~~GLKv 185 (402)
-.+.|+.||++||+.|.++| |...+ +..+...-.+.+++++++|++.
T Consensus 106 ~~e~l~~Lk~~Gv~risiGv-----qS~~~~~L~~l~r~~~~~~~~~ai~~~~~~G~~~ 159 (378)
T PRK05660 106 EADRFVGYQRAGVNRISIGV-----QSFSEEKLKRLGRIHGPDEAKRAAKLAQGLGLRS 159 (378)
T ss_pred CHHHHHHHHHcCCCEEEecc-----CcCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCe
Confidence 34889999999999999986 43322 3467788888999999999974
No 293
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=27.27 E-value=2e+02 Score=35.93 Aligned_cols=65 Identities=12% Similarity=0.115 Sum_probs=47.6
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceec-------------chHHHHHHHHHHHcCCeEEEEEeeeccC
Q 015723 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYN-------------WSGYRRLFQIVRELELKLQVVMSFHECG 195 (402)
Q Consensus 130 ~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Yd-------------ws~Y~~l~~mvr~~GLKv~vvmsFHqCG 195 (402)
+-+.+.+.|..||++||+.|-+.-.+--... +..-|| ...++++++.++++||+|++=+-+.-++
T Consensus 756 tf~~~~~~l~Yl~~LGv~~i~lsPi~~a~~g-s~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~NH~~ 833 (1693)
T PRK14507 756 TFADAEAILPYLAALGISHVYASPILKARPG-STHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVPNHMG 833 (1693)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECCCcCCCCC-CCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecccccC
Confidence 5578999999999999999988766642211 222232 4568899999999999997766554333
No 294
>PF08267 Meth_synt_1: Cobalamin-independent synthase, N-terminal domain; InterPro: IPR013215 Cobalamin-independent methionine synthase, MetE, catalyses the synthesis of the amino acid methionine by the transfer of a methyl group from methyltetrahydrofolate to homocysteine []. The N-terminal and C-terminal domains of MetE together define a catalytic cleft in the enzyme. The N-terminal domain is thought to bind the substrate, in particular, the negatively charged polyglutamate chain. The N-terminal domain is also thought to stabilise a loop from the C-terminal domain.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0008270 zinc ion binding, 0008652 cellular amino acid biosynthetic process; PDB: 1U22_A 1U1H_A 1U1U_A 1U1J_A 3T0C_A 3L7R_A 2NQ5_A 3PPF_A 3PPH_A 3PPG_A ....
Probab=27.22 E-value=75 Score=32.37 Aligned_cols=34 Identities=18% Similarity=0.257 Sum_probs=19.6
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcC
Q 015723 135 VNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELE 182 (402)
Q Consensus 135 ~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~G 182 (402)
++-++..|++|+|-|.++ |||+||.+.+++--.|
T Consensus 42 ~~~w~~q~~agld~ip~g--------------dfs~YD~vLD~~~~~g 75 (310)
T PF08267_consen 42 KEHWQLQKEAGLDLIPVG--------------DFSLYDHVLDTAVLLG 75 (310)
T ss_dssp HHHHHHHHHTT-SBEEES-----------------SS-HHHHHHHHTT
T ss_pred HHHHHHHHHcCCCcccCC--------------CCchhhHHHHHHHHhc
Confidence 345667889999998875 5666666655555444
No 295
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=27.12 E-value=1e+02 Score=31.27 Aligned_cols=52 Identities=6% Similarity=-0.004 Sum_probs=37.7
Q ss_pred HHHHHHHHHcCcceEEEeee-ee--eeecCCCceecchHHHHHHHHHHHcCCe-EEE
Q 015723 135 VNQLKILKSINVDGVMVDCW-WG--IVEAHTPQVYNWSGYRRLFQIVRELELK-LQV 187 (402)
Q Consensus 135 ~~dL~~LK~aGVdgV~vdVW-WG--iVE~~~p~~Ydws~Y~~l~~mvr~~GLK-v~v 187 (402)
++.|+.||++||+.|.++|= -. +.+. -.+.++.....+.+++++++|++ +.+
T Consensus 108 ~e~l~~l~~~G~~rvslGvQS~~~~~L~~-l~R~~s~~~~~~a~~~l~~~g~~~v~~ 163 (375)
T PRK05628 108 PEFFAALRAAGFTRVSLGMQSAAPHVLAV-LDRTHTPGRAVAAAREARAAGFEHVNL 163 (375)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHH-cCCCCCHHHHHHHHHHHHHcCCCcEEE
Confidence 36788999999999999863 11 1111 24556778889999999999998 543
No 296
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=26.93 E-value=1.4e+02 Score=30.64 Aligned_cols=54 Identities=15% Similarity=0.157 Sum_probs=40.3
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeee--eeeeecCCCceecchHHHHHHHHHHHcCC
Q 015723 130 DPEILVNQLKILKSINVDGVMVDCW--WGIVEAHTPQVYNWSGYRRLFQIVRELEL 183 (402)
Q Consensus 130 ~~~~l~~dL~~LK~aGVdgV~vdVW--WGiVE~~~p~~Ydws~Y~~l~~mvr~~GL 183 (402)
+++-+.-=-++.+++|.||+|+.|. =...=..++++-++..++++++.++.-+.
T Consensus 227 rr~lv~pla~AA~AaGAdglmiEVHp~P~~AlsD~~Qql~~~~f~~l~~~~~~~~~ 282 (286)
T COG2876 227 RRDLVEPLAKAAIAAGADGLMIEVHPDPEKALSDAKQQLTPEEFEELVKELRALAD 282 (286)
T ss_pred chhhHHHHHHHHHhccCCeeEEEecCCcccccCcccccCCHHHHHHHHHHHHHHhh
Confidence 3444444445668999999999998 33333357999999999999999987654
No 297
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=26.70 E-value=3.7e+02 Score=27.71 Aligned_cols=54 Identities=7% Similarity=0.003 Sum_probs=37.4
Q ss_pred HHHHHHHHHHcCcceEEEeeeeeee--ec--CCCceecchHHHHHHHHHHHcCCeEEE
Q 015723 134 LVNQLKILKSINVDGVMVDCWWGIV--EA--HTPQVYNWSGYRRLFQIVRELELKLQV 187 (402)
Q Consensus 134 l~~dL~~LK~aGVdgV~vdVWWGiV--E~--~~p~~Ydws~Y~~l~~mvr~~GLKv~v 187 (402)
..++++++.++|++.|.+-+--.-+ +. .......++-..+.++.+++.|++|.+
T Consensus 77 ~~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~ 134 (378)
T PRK11858 77 VKSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSF 134 (378)
T ss_pred CHHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 4667888999999988776542211 10 012344677888899999999999866
No 298
>cd08597 PI-PLCc_PRIP_metazoa Catalytic domain of metazoan phospholipase C related, but catalytically inactive protein. This family corresponds to the catalytic domain present in metazoan phospholipase C related, but catalytically inactive proteins (PRIP), which belong to a group of novel Inositol 1,4,5-trisphosphate (InsP3) binding protein. PRIP has a primary structure and domain architecture, incorporating a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain with highly conserved X- and Y-regions split by a linker sequence, and a C-terminal C2 domain, similar to phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11)-delta isoforms. Due to replacement of critical catalytic residues, PRIP do not have PLC enzymatic activity. PRIP consists of two subfamilies, PRIP-1(previously known as p130 or PLC-1), which is predominantly expressed in the brain, and PRIP-2 (previously known as PLC-2), which exhibits a relatively ubiquitous expression. Experiment
Probab=26.56 E-value=1.3e+02 Score=30.28 Aligned_cols=63 Identities=24% Similarity=0.483 Sum_probs=42.9
Q ss_pred CcccChHHHHHHHHHHHHcCcceEEEeeeee-eeecCCCcee-cch-----HHHHHHHHHHHcCCe-----EEEEEeee
Q 015723 126 CELVDPEILVNQLKILKSINVDGVMVDCWWG-IVEAHTPQVY-NWS-----GYRRLFQIVRELELK-----LQVVMSFH 192 (402)
Q Consensus 126 ~~~~~~~~l~~dL~~LK~aGVdgV~vdVWWG-iVE~~~p~~Y-dws-----~Y~~l~~mvr~~GLK-----v~vvmsFH 192 (402)
+++.-+..++.-.++|+ .|+..|++|||=| .-| |-.| ++. .++++++.|++.+.+ |++.|--|
T Consensus 24 ~Ql~~~ss~~~y~~aL~-~GcR~vElD~w~g~~ge---pvV~Hg~tlts~i~f~dv~~~I~~~aF~~s~yPvIlslE~H 98 (260)
T cd08597 24 DQLRGPSSVEGYVRALQ-RGCRCVELDCWDGPNGE---PVIYHGHTLTSKISFRSVIEAINEYAFVASEYPLILCIENH 98 (260)
T ss_pred CeecCccCHHHHHHHHH-hCCCEEEEEeEcCCCCC---EEEEeCCccccceEHHHHHHHHHHHhccCCCCCEEEEEecC
Confidence 45665666666666664 9999999999933 222 2222 333 688999999998765 66666666
No 299
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=26.49 E-value=1.9e+02 Score=26.53 Aligned_cols=46 Identities=11% Similarity=0.161 Sum_probs=34.8
Q ss_pred HHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEEEEeee
Q 015723 134 LVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFH 192 (402)
Q Consensus 134 l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsFH 192 (402)
.++=++.++++||+.+.+--+. +..++.+++++++.+ ++.+.+++|
T Consensus 17 ~~~~~~~~~~~Gv~~~v~~~~~------------~~~~~~~~~~~~~~~-~i~~~~Gih 62 (252)
T TIGR00010 17 VEEVIERAKAAGVTAVVAVGTD------------LEDFLRALELAEKYP-NVYAAVGVH 62 (252)
T ss_pred HHHHHHHHHHcCCCEEEEecCC------------HHHHHHHHHHHHHCC-CEEEEEEeC
Confidence 4566788899999988743211 245677889999999 999988887
No 300
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=26.37 E-value=78 Score=31.48 Aligned_cols=53 Identities=9% Similarity=0.080 Sum_probs=39.8
Q ss_pred HHHHHHHHHcCcceEEEeee-eeeeecCCCceecchHHHHHHHHHHHcCCeEEE
Q 015723 135 VNQLKILKSINVDGVMVDCW-WGIVEAHTPQVYNWSGYRRLFQIVRELELKLQV 187 (402)
Q Consensus 135 ~~dL~~LK~aGVdgV~vdVW-WGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~v 187 (402)
.+++++.|+.|++.|++.-= ++.--......-.++-|.+.++.+++.||+|.+
T Consensus 134 ~~qi~~A~~~GAd~VELhTG~YA~a~~~~~~~~el~~i~~aa~~A~~lGL~VnA 187 (237)
T TIGR00559 134 KDQISAAAEVGADRIEIHTGPYANAYNKKEMAEELQRIVKASVHAHSLGLKVNA 187 (237)
T ss_pred HHHHHHHHHhCcCEEEEechhhhcCCCchhHHHHHHHHHHHHHHHHHcCCEEec
Confidence 67888999999999998643 333212223345688999999999999999976
No 301
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=26.23 E-value=1.4e+02 Score=31.18 Aligned_cols=50 Identities=10% Similarity=0.123 Sum_probs=37.9
Q ss_pred HHHHHHHHHcCcceEEEeeeee---eeecCCCceecchHHHHHHHHHHHcCCeE
Q 015723 135 VNQLKILKSINVDGVMVDCWWG---IVEAHTPQVYNWSGYRRLFQIVRELELKL 185 (402)
Q Consensus 135 ~~dL~~LK~aGVdgV~vdVWWG---iVE~~~p~~Ydws~Y~~l~~mvr~~GLKv 185 (402)
++.|+.||++||+.|.|++==. .++. -.+.++..-..+.+++++++|++.
T Consensus 141 ~e~l~~l~~~G~~rvslGvQS~~~~~L~~-l~R~~~~~~~~~ai~~l~~~g~~~ 193 (430)
T PRK08208 141 AEKLALLAARGVNRLSIGVQSFHDSELHA-LHRPQKRADVHQALEWIRAAGFPI 193 (430)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHH-hCCCCCHHHHHHHHHHHHHcCCCe
Confidence 4678999999999999986311 1111 234568889999999999999985
No 302
>PRK14567 triosephosphate isomerase; Provisional
Probab=26.23 E-value=1.1e+02 Score=30.37 Aligned_cols=44 Identities=11% Similarity=0.243 Sum_probs=33.1
Q ss_pred HHHHHHHcCcceEEEeeeeeeeecCCCceecchHHH----HHHHHHHHcCCeEEEEEe
Q 015723 137 QLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYR----RLFQIVRELELKLQVVMS 190 (402)
Q Consensus 137 dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~----~l~~mvr~~GLKv~vvms 190 (402)
.-.+||++|++.|.|+ +++++=.|..=+ +-++.+.++||++++ |
T Consensus 77 S~~mLkd~G~~yviiG--------HSERR~~f~Etd~~v~~Kv~~al~~gl~pI~--C 124 (253)
T PRK14567 77 SARMLEDIGCDYLLIG--------HSERRSLFAESDEDVFKKLNKIIDTTITPVV--C 124 (253)
T ss_pred CHHHHHHcCCCEEEEC--------cccccCccCCCHHHHHHHHHHHHHCCCEEEE--E
Confidence 4578999999999998 456666666666 445568889999855 7
No 303
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=26.11 E-value=1.8e+02 Score=28.93 Aligned_cols=70 Identities=16% Similarity=0.217 Sum_probs=45.7
Q ss_pred HHHHHHHHH---HcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEEEEeeeccCCCCC------CCccc
Q 015723 134 LVNQLKILK---SINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVG------DDVHI 204 (402)
Q Consensus 134 l~~dL~~LK---~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsFHqCGgNVG------Dt~~I 204 (402)
++.|++.|| ++|++.+..- =-||-+.|.+.++.++++|+.+-++-++=-+.. .. .-|-+
T Consensus 147 ~~~d~~~L~~Ki~aGA~f~iTQ-----------~~Fd~~~~~~f~~~~~~~gi~~PIi~GI~pi~s-~~~~~~~~~~~Gi 214 (281)
T TIGR00677 147 VELDLKYLKEKVDAGADFIITQ-----------LFYDVDNFLKFVNDCRAIGIDCPIVPGIMPINN-YASFLRRAKWSKT 214 (281)
T ss_pred HHHHHHHHHHHHHcCCCEeecc-----------ceecHHHHHHHHHHHHHcCCCCCEEeeccccCC-HHHHHHHHhcCCC
Confidence 455666665 4999977542 358999999999999999877644333211110 00 12557
Q ss_pred cCChhhhhhhh
Q 015723 205 PLPQWVMEIGQ 215 (402)
Q Consensus 205 pLP~WV~~~g~ 215 (402)
.+|.|+.+.-+
T Consensus 215 ~vP~~l~~~l~ 225 (281)
T TIGR00677 215 KIPQEIMSRLE 225 (281)
T ss_pred CCCHHHHHHHH
Confidence 89999997544
No 304
>cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=25.87 E-value=62 Score=31.93 Aligned_cols=31 Identities=19% Similarity=0.440 Sum_probs=24.8
Q ss_pred CCcccChHHHHHHHHHHHHcCcceEEEeeeee
Q 015723 125 NCELVDPEILVNQLKILKSINVDGVMVDCWWG 156 (402)
Q Consensus 125 ~~~~~~~~~l~~dL~~LK~aGVdgV~vdVWWG 156 (402)
++++..+..++.-.++|+ .|+..|++|||=|
T Consensus 23 g~Ql~~~ss~e~y~~aL~-~GcR~vElD~wdg 53 (229)
T cd08627 23 GDQFSSESSLEAYARCLR-MGCRCIELDCWDG 53 (229)
T ss_pred CCccCCcccHHHHHHHHH-hCCCEEEEEeecC
Confidence 356777777877777777 9999999999954
No 305
>PF11340 DUF3142: Protein of unknown function (DUF3142); InterPro: IPR021488 This bacterial family of proteins has no known function.
Probab=25.77 E-value=4.2e+02 Score=25.48 Aligned_cols=90 Identities=21% Similarity=0.419 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHcC--cceEEEeeeeeeeecCCCceecchHHHHHHHHHHHc---CCeEEEEEeeeccCCCCCCCccccC
Q 015723 132 EILVNQLKILKSIN--VDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVREL---ELKLQVVMSFHECGGNVGDDVHIPL 206 (402)
Q Consensus 132 ~~l~~dL~~LK~aG--VdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~---GLKv~vvmsFHqCGgNVGDt~~IpL 206 (402)
..+.+.|...+.+| |.||.||. .-....=..|.++.+.+|+. ++++ |. | .|
T Consensus 27 ~~i~~~l~~W~~~G~~v~giQIDf--------Da~t~~L~~Y~~fL~~LR~~LP~~~~L----SI-----------T-~L 82 (181)
T PF11340_consen 27 ARILQLLQRWQAAGNNVAGIQIDF--------DAATSRLPAYAQFLQQLRQRLPPDYRL----SI-----------T-AL 82 (181)
T ss_pred HHHHHHHHHHHHcCCCceEEEEec--------CccccchHHHHHHHHHHHHhCCCCceE----ee-----------E-Ee
Confidence 35556666777777 57888885 33445667899999999974 4555 32 2 49
Q ss_pred ChhhhhhhhcCCCeEeeCCCCCccccce-ecc--cCccc--ccCCCCchHHHHHHHHHHHHH
Q 015723 207 PQWVMEIGQNNPEIYFTDREGRRNSECL-TWG--IDKER--VLRGRTAVEVYFDYMRSFRVE 263 (402)
Q Consensus 207 P~WV~~~g~~~PDI~~tDr~G~rn~E~L-Sl~--~D~~p--vl~GRtp~~~Y~dfm~sF~~~ 263 (402)
|.|.. .|+ .| .+. +|++= ++.||+-.+.|.+|..+...-
T Consensus 83 ~dW~~-----~~~-------------~L~~L~~~VDE~VlQ~yqGl~d~~~~~~yl~~l~~l 126 (181)
T PF11340_consen 83 PDWLS-----SPD-------------WLNALPGVVDELVLQVYQGLFDPPNYARYLPRLARL 126 (181)
T ss_pred hhhhc-----Cch-------------hhhhHhhcCCeeEEEeecCCCCHHHHHHHHHHHhcC
Confidence 99986 333 12 132 56543 378999999999998876543
No 306
>PRK06052 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=25.73 E-value=1.7e+02 Score=30.67 Aligned_cols=85 Identities=16% Similarity=0.176 Sum_probs=60.6
Q ss_pred ccCCCCCCccEEEeeccceeeCC--C-cccC---------hHHHHHHHHHHHHcCcceEEEeee-eeeeecCCCceecch
Q 015723 103 RDFAGTPYVPVYVMLPLGIIDMN--C-ELVD---------PEILVNQLKILKSINVDGVMVDCW-WGIVEAHTPQVYNWS 169 (402)
Q Consensus 103 ~~~~~~~~vpvyVMlPLd~V~~~--~-~~~~---------~~~l~~dL~~LK~aGVdgV~vdVW-WGiVE~~~p~~Ydws 169 (402)
.....+.+|++-|+-|....... . ...+ .+.+++.++.|+.+||..|.||+- +|.-= +-+|+-+
T Consensus 105 ~~~~~~~~VKv~iTGP~tL~~~~f~~~~Y~d~~~~la~~ia~~l~~e~~~l~~~gv~~IqIDEP~l~~~~---~~~~~~~ 181 (344)
T PRK06052 105 EETGETLEVRVCVTGPTELYLQEFGGTIYTDILLILAKSVERFVENAIKSAKNFKIKTISIDEPSLGINP---EIQFSDD 181 (344)
T ss_pred HhhCCCCCeEEEecCHHHHHHHHcCCccccchHHHHHHHHHHHHHHHHHHHHHCCCCEEEecCcccccCC---ccccCHH
Confidence 34455667899999998876421 1 2223 346788888999999999999998 87532 2357777
Q ss_pred HHHHHHHHH----HHcCCeEEEEEeee
Q 015723 170 GYRRLFQIV----RELELKLQVVMSFH 192 (402)
Q Consensus 170 ~Y~~l~~mv----r~~GLKv~vvmsFH 192 (402)
+-.+.++.+ +..|++++. +.|
T Consensus 182 ~~i~Al~~a~~~a~~~gvdv~i--~lH 206 (344)
T PRK06052 182 EIISALTVASTYARKQGADVEI--HLH 206 (344)
T ss_pred HHHHHHHHHHhhhccCCcceEE--EEe
Confidence 777777777 456898877 666
No 307
>PLN02540 methylenetetrahydrofolate reductase
Probab=25.65 E-value=1.5e+02 Score=32.77 Aligned_cols=73 Identities=12% Similarity=0.169 Sum_probs=48.2
Q ss_pred HHHHHHHHHHH---HcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEEEEeeeccCCC-----CCCCcc
Q 015723 132 EILVNQLKILK---SINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGN-----VGDDVH 203 (402)
Q Consensus 132 ~~l~~dL~~LK---~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsFHqCGgN-----VGDt~~ 203 (402)
..++.+|+.|| +||.+.+.. -=-||-..|.+.++++|+.|+++-++.+.--+..- .-.-|.
T Consensus 153 ~~~~~dl~~Lk~KvdAGAdFiIT-----------QlfFD~d~f~~f~~~~r~~Gi~vPIipGImPI~S~k~l~r~~~l~G 221 (565)
T PLN02540 153 EAYQKDLAYLKEKVDAGADLIIT-----------QLFYDTDIFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCK 221 (565)
T ss_pred CChHHHHHHHHHHHHcCCCEEee-----------ccccCHHHHHHHHHHHHhcCCCCCEEeeecccCCHHHHHHHHhccC
Confidence 34667777776 499998764 33689999999999999999654333232111100 001255
Q ss_pred ccCChhhhhhhh
Q 015723 204 IPLPQWVMEIGQ 215 (402)
Q Consensus 204 IpLP~WV~~~g~ 215 (402)
|.+|.|+.+.-+
T Consensus 222 i~IP~~i~~rLe 233 (565)
T PLN02540 222 TKIPAEITAALE 233 (565)
T ss_pred CcCCHHHHHHHH
Confidence 899999997543
No 308
>PLN03030 cationic peroxidase; Provisional
Probab=25.49 E-value=49 Score=34.12 Aligned_cols=46 Identities=22% Similarity=0.354 Sum_probs=34.3
Q ss_pred cccCcccccCCCCc--hHHHH--------HHHHHHHHHHhhhhcCceEEEEEeeccCCCccC
Q 015723 236 WGIDKERVLRGRTA--VEVYF--------DYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELR 287 (402)
Q Consensus 236 l~~D~~pvl~GRtp--~~~Y~--------dfm~sF~~~fa~~~~~~vI~eI~VGlGP~GELR 287 (402)
|.+|..-+-++||- ++.|. .|.+.|.++|.++ .+|.|=.|..||+|
T Consensus 262 L~SDq~L~~d~~T~~~V~~~A~~~~~~~~~F~~~Fa~AmvKM------g~i~VlTG~~GEIR 317 (324)
T PLN03030 262 LESDQKLWTDASTRTFVQRFLGVRGLAGLNFNVEFGRSMVKM------SNIGVKTGTNGEIR 317 (324)
T ss_pred cCCchHhhcCccHHHHHHHHhcccccchhhhHHHHHHHHHHH------ccCCCCCCCCCcee
Confidence 56676555566775 67776 5888888888773 46778889999998
No 309
>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=25.40 E-value=4.8e+02 Score=25.37 Aligned_cols=45 Identities=20% Similarity=0.265 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEEEEe
Q 015723 133 ILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMS 190 (402)
Q Consensus 133 ~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvms 190 (402)
.+...+++|+++++|.|.+..+ + .....+++.+++.|++...+++
T Consensus 187 d~~~~i~~l~~~~~d~v~~~~~-~------------~~~~~~~~~~~~~G~~~~~~~~ 231 (347)
T cd06340 187 DLTSEVLKLKAANPDAILPASY-T------------NDAILLVRTMKEQRVEPKAVYS 231 (347)
T ss_pred chHHHHHHHHhcCCCEEEEccc-c------------hhHHHHHHHHHHcCCCCcEEEe
Confidence 3555666666666666554321 1 0122355566666665544433
No 310
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=25.23 E-value=2.5e+02 Score=28.01 Aligned_cols=104 Identities=17% Similarity=0.202 Sum_probs=73.2
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCccccCChh
Q 015723 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQW 209 (402)
Q Consensus 130 ~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsFHqCGgNVGDt~~IpLP~W 209 (402)
+++..++-++.|++.+||||-+-- .. .-+.+.+++.+.|++++++..... -
T Consensus 99 ~~~~e~~~~~~l~~~~vdGiIi~~----~~----------~~~~~~~~l~~~~~P~V~i~~~~~----------~----- 149 (333)
T COG1609 99 DPEKEREYLETLLQKRVDGLILLG----ER----------PNDSLLELLAAAGIPVVVIDRSPP----------G----- 149 (333)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEec----CC----------CCHHHHHHHHhcCCCEEEEeCCCc----------c-----
Confidence 688899999999999999998854 11 125678888999999988665311 0
Q ss_pred hhhhhhcCCCeEeeCCCCCccc-cce-ecccCcccccCCCCchHHHHHHHHHHHHHHhhh
Q 015723 210 VMEIGQNNPEIYFTDREGRRNS-ECL-TWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEF 267 (402)
Q Consensus 210 V~~~g~~~PDI~~tDr~G~rn~-E~L-Sl~~D~~pvl~GRtp~~~Y~dfm~sF~~~fa~~ 267 (402)
...|-+..=|+.|-+.. ++| ..|..+.-+++|.......++-.+.|++.+++.
T Consensus 150 -----~~~~~V~~Dn~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~Gf~~al~~~ 204 (333)
T COG1609 150 -----LGVPSVGIDNFAGAYLATEHLIELGHRRIAFIGGPLDSSASRERLEGYRAALREA 204 (333)
T ss_pred -----CCCCEEEEChHHHHHHHHHHHHHCCCceEEEEeCCCccccHhHHHHHHHHHHHHC
Confidence 22333444445554433 555 477777777888776777788888899888885
No 311
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=25.08 E-value=73 Score=34.21 Aligned_cols=10 Identities=10% Similarity=0.504 Sum_probs=7.2
Q ss_pred EEEeecccee
Q 015723 113 VYVMLPLGII 122 (402)
Q Consensus 113 vyVMlPLd~V 122 (402)
.++|+|||++
T Consensus 283 pn~v~PlD~L 292 (431)
T TIGR01917 283 ADRVIPVDVL 292 (431)
T ss_pred CCeeeeHHHH
Confidence 3778888874
No 312
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=24.95 E-value=3.1e+02 Score=27.31 Aligned_cols=79 Identities=15% Similarity=0.298 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHcCcceEEEeee-eeeeecCCCceecchHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCccc--cCChh
Q 015723 133 ILVNQLKILKSINVDGVMVDCW-WGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHI--PLPQW 209 (402)
Q Consensus 133 ~l~~dL~~LK~aGVdgV~vdVW-WGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsFHqCGgNVGDt~~I--pLP~W 209 (402)
+.++--+..++.|+.||-+--+ ++.-.. .+. |..+++.+.++|+-|+. |---+-.+...+- ..|.=
T Consensus 114 a~~E~er~v~~~gf~g~~l~p~~~~~~~~-~~~------~~pi~~~a~~~gvpv~i----htG~~~~~~~~~~~~~~p~~ 182 (293)
T COG2159 114 AAEELERRVRELGFVGVKLHPVAQGFYPD-DPR------LYPIYEAAEELGVPVVI----HTGAGPGGAGLEKGHSDPLY 182 (293)
T ss_pred HHHHHHHHHHhcCceEEEecccccCCCCC-ChH------HHHHHHHHHHcCCCEEE----EeCCCCCCcccccCCCCchH
Confidence 4444455556799999998544 766654 222 89999999999999954 6322222222222 56667
Q ss_pred hhhhhhcCCCeEe
Q 015723 210 VMEIGQNNPEIYF 222 (402)
Q Consensus 210 V~~~g~~~PDI~~ 222 (402)
+.++.++.|++-+
T Consensus 183 ~~~va~~fP~l~I 195 (293)
T COG2159 183 LDDVARKFPELKI 195 (293)
T ss_pred HHHHHHHCCCCcE
Confidence 7778899998644
No 313
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=24.88 E-value=1.4e+02 Score=26.09 Aligned_cols=59 Identities=15% Similarity=0.072 Sum_probs=38.6
Q ss_pred HHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCccccCChhhhhhhhcCC
Q 015723 139 KILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNP 218 (402)
Q Consensus 139 ~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsFHqCGgNVGDt~~IpLP~WV~~~g~~~P 218 (402)
..++..|++++.++.+- ...+++++++++|+++.+ .+ +.-|..+....+...
T Consensus 131 ~~~~~~~~~~v~~~~~~--------------~~~~~i~~~~~~g~~v~~--wt------------vn~~~~~~~~~~~GV 182 (189)
T cd08556 131 ELARALGADAVNPHYKL--------------LTPELVRAAHAAGLKVYV--WT------------VNDPEDARRLLALGV 182 (189)
T ss_pred hHHHhcCCeEEccChhh--------------CCHHHHHHHHHcCCEEEE--Ec------------CCCHHHHHHHHHCCC
Confidence 46788888888775321 347999999999999966 42 223444444445556
Q ss_pred CeEeeCC
Q 015723 219 EIYFTDR 225 (402)
Q Consensus 219 DI~~tDr 225 (402)
|...||+
T Consensus 183 dgI~TD~ 189 (189)
T cd08556 183 DGIITDD 189 (189)
T ss_pred CEEecCC
Confidence 6666663
No 314
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=24.87 E-value=69 Score=33.50 Aligned_cols=70 Identities=16% Similarity=0.193 Sum_probs=48.3
Q ss_pred cEEEeeccceeeCCCcccChHHHHHHHHHHHHcCcceEEEee---------------------eee--eeecCCCceecc
Q 015723 112 PVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDC---------------------WWG--IVEAHTPQVYNW 168 (402)
Q Consensus 112 pvyVMlPLd~V~~~~~~~~~~~l~~dL~~LK~aGVdgV~vdV---------------------WWG--iVE~~~p~~Ydw 168 (402)
|+|+-+-+.. |.+|.+ +.=.+-+++.|++|+|.|-.-- ||+ +.|--+.-..++
T Consensus 14 ~~~iIAEig~-NHnG~l---e~A~~lIdaAk~aGADavKfQt~~~~d~~t~~~~~~~~~i~~~~~~~slyel~e~~~~p~ 89 (347)
T COG2089 14 KPFIIAEIGA-NHNGDL---ERAKELIDAAKEAGADAVKFQTFYTPDIMTLESKNVPFKIKTLWDKVSLYELYEEAETPL 89 (347)
T ss_pred CcEEEeeecc-cccCcH---HHHHHHHHHHHHcCcceeeeecccccccccccccCCccccccccccccHHHHHHHhcCCH
Confidence 4555555543 445555 4555667888999999998766 544 223223345689
Q ss_pred hHHHHHHHHHHHcCCeE
Q 015723 169 SGYRRLFQIVRELELKL 185 (402)
Q Consensus 169 s~Y~~l~~mvr~~GLKv 185 (402)
+|+.+|++.+++.|+-+
T Consensus 90 e~~~~Lke~a~~~Gi~~ 106 (347)
T COG2089 90 EWHAQLKEYARKRGIIF 106 (347)
T ss_pred HHHHHHHHHHHHcCeEE
Confidence 99999999999999854
No 315
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=24.67 E-value=2.3e+02 Score=29.73 Aligned_cols=44 Identities=14% Similarity=0.252 Sum_probs=35.6
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeecCC-------CceecchHHHHHHHHHHHcCC
Q 015723 135 VNQLKILKSINVDGVMVDCWWGIVEAHT-------PQVYNWSGYRRLFQIVRELEL 183 (402)
Q Consensus 135 ~~dL~~LK~aGVdgV~vdVWWGiVE~~~-------p~~Ydws~Y~~l~~mvr~~GL 183 (402)
++.|++||++|++.|.+++ |... .+..+..-..+.+++++++|+
T Consensus 151 ~e~l~~l~~aG~~risiGv-----qS~~~~~L~~l~r~~~~~~~~~ai~~l~~~G~ 201 (453)
T PRK09249 151 LEMLDALRELGFNRLSLGV-----QDFDPEVQKAVNRIQPFEFTFALVEAARELGF 201 (453)
T ss_pred HHHHHHHHHcCCCEEEECC-----CCCCHHHHHHhCCCCCHHHHHHHHHHHHHcCC
Confidence 4778999999999999985 3321 345688889999999999999
No 316
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=24.55 E-value=1.4e+02 Score=30.97 Aligned_cols=57 Identities=9% Similarity=0.089 Sum_probs=38.2
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEEEEe
Q 015723 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMS 190 (402)
Q Consensus 130 ~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvms 190 (402)
..+..++-|+.++++|+..|=+ ++..++.+..=-...++++.+.+++.|++|++=++
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFT----SL~ipe~~~~~~~~~~~~l~~~a~~~~~~v~~Dis 68 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFT----SLHIPEDDPEDYLERLKELLKLAKELGMEVIADIS 68 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEE----EE---------HHHHHHHHHHHHHHCT-EEEEEE-
T ss_pred CHHHHHHHHHHHHHCCCCEEEC----CCCcCCCCHHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 4578899999999999988644 45555444455678999999999999999988333
No 317
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=24.40 E-value=98 Score=31.98 Aligned_cols=50 Identities=12% Similarity=0.136 Sum_probs=34.4
Q ss_pred HHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEE
Q 015723 134 LVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQV 187 (402)
Q Consensus 134 l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~v 187 (402)
+.+.|+.+++.|+++|..+. |.++-....+ .. -..++++.++++||+|++
T Consensus 247 ~~~~l~~i~a~~a~~i~P~~-~~l~~~~~~~--~~-~~~~~v~~Ah~~GL~V~~ 296 (356)
T cd08560 247 WSPSMDELKARGVNIIAPPI-WMLVDPDENG--KI-VPSEYAKAAKAAGLDIIT 296 (356)
T ss_pred HHHHHHHHHhCCccEecCch-hhcccccccc--cc-CCHHHHHHHHHcCCEEEE
Confidence 55778888889999765533 3343321222 22 557899999999999988
No 318
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=24.29 E-value=2.1e+02 Score=30.73 Aligned_cols=50 Identities=18% Similarity=0.294 Sum_probs=37.0
Q ss_pred HHHHHHHHHcCcceEEEeee-ee--eeecCCCceecchHHHHHHHHHHHcCC-eE
Q 015723 135 VNQLKILKSINVDGVMVDCW-WG--IVEAHTPQVYNWSGYRRLFQIVRELEL-KL 185 (402)
Q Consensus 135 ~~dL~~LK~aGVdgV~vdVW-WG--iVE~~~p~~Ydws~Y~~l~~mvr~~GL-Kv 185 (402)
++.|+.||++||+.|.|++= -. +.+. -.....+....+.+++++++|+ +|
T Consensus 269 ~e~L~~Lk~~Gv~RISIGvQS~~d~vLk~-igR~ht~e~v~~ai~~ar~~Gf~~I 322 (488)
T PRK08207 269 EEKLEVLKKYGVDRISINPQTMNDETLKA-IGRHHTVEDIIEKFHLAREMGFDNI 322 (488)
T ss_pred HHHHHHHHhcCCCeEEEcCCcCCHHHHHH-hCCCCCHHHHHHHHHHHHhCCCCeE
Confidence 45689999999999998752 11 1111 1244789999999999999999 44
No 319
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=24.22 E-value=1.9e+02 Score=27.64 Aligned_cols=47 Identities=9% Similarity=0.201 Sum_probs=34.3
Q ss_pred HHHHHHHHHHcCcceEEE-eeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEEEEeeec
Q 015723 134 LVNQLKILKSINVDGVMV-DCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHE 193 (402)
Q Consensus 134 l~~dL~~LK~aGVdgV~v-dVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsFHq 193 (402)
..+.++.++++||..+.+ .... ..++.+.+++++.+.++.+.+++|-
T Consensus 16 ~~~~~~~~~~~g~~~~i~~~~~~-------------~~~~~~~~~~~~~~~~v~~~~GiHP 63 (255)
T PF01026_consen 16 RPEVLERAREAGVSAIIIVSTDP-------------EDWERVLELASQYPDRVYPALGIHP 63 (255)
T ss_dssp HHHHHHHHHHTTEEEEEEEESSH-------------HHHHHHHHHHHHTTTEEEEEE---G
T ss_pred HHHHHHHHHHcCCCEEEEcCCCH-------------HHhHHHHHHHhcCCCeEEEEecCCc
Confidence 677889999999988742 2222 4556889999999999999999993
No 320
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=24.13 E-value=2.4e+02 Score=34.74 Aligned_cols=95 Identities=14% Similarity=0.174 Sum_probs=60.4
Q ss_pred eeccceeeCCCcc---c-ChHHHHHHHHHHHHcCcceEEEeeeeeeeecC-CCce-----------------ecchHHHH
Q 015723 116 MLPLGIIDMNCEL---V-DPEILVNQLKILKSINVDGVMVDCWWGIVEAH-TPQV-----------------YNWSGYRR 173 (402)
Q Consensus 116 MlPLd~V~~~~~~---~-~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~-~p~~-----------------Ydws~Y~~ 173 (402)
-|||+.|+.-..+ . .-+.|++.|+.+|++|++.|-+.=-= |.. +.-. -.+..+++
T Consensus 112 ~lPl~~i~iqTvlsK~mG~~~~w~~~L~~ik~lGyN~IhftPI~---~~G~SnS~Ysi~Dyl~idP~~~~~~~~~~d~~~ 188 (1464)
T TIGR01531 112 FLPLDSIALQTVLAKLLGPLSEWEPRLRVAKEKGYNMIHFTPLQ---ELGGSNSCYSLYDQLQLNQHFKSQKDGKNDVQA 188 (1464)
T ss_pred ccCcCceeeeeehhhhcCCHHHHHHHHHHHHHcCCCEEEeCCCc---cCCCCCCCccccchhhcChhhcccCCcHHHHHH
Confidence 4677766532111 1 44789999999999999998764321 110 1111 14556788
Q ss_pred HHHHHHHc-CCeEEEEEeeeccCCCCCCCccccCChhhhhhhhcCCCeEeeCCC
Q 015723 174 LFQIVREL-ELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDRE 226 (402)
Q Consensus 174 l~~mvr~~-GLKv~vvmsFHqCGgNVGDt~~IpLP~WV~~~g~~~PDI~~tDr~ 226 (402)
+++.+++. ||+++.=.=|.-| ..==.|+. ++||-.|...+
T Consensus 189 lV~~~h~~~Gm~~ilDvV~NHT---------a~ds~Wl~----eHPEa~Yn~~~ 229 (1464)
T TIGR01531 189 LVEKLHRDWNVLSITDIVFNHT---------ANNSPWLL----EHPEAAYNCIT 229 (1464)
T ss_pred HHHHHHHhcCCEEEEEeeeccc---------ccCCHHHH----hChHhhcCCCC
Confidence 88888886 9999775555333 33446885 57887776644
No 321
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=23.98 E-value=1.4e+02 Score=25.66 Aligned_cols=52 Identities=17% Similarity=0.155 Sum_probs=35.7
Q ss_pred HHHHHHHHHcCcceEEEeee-ee--eeecCCCceecchHHHHHHHHHHHcC-CeEEE
Q 015723 135 VNQLKILKSINVDGVMVDCW-WG--IVEAHTPQVYNWSGYRRLFQIVRELE-LKLQV 187 (402)
Q Consensus 135 ~~dL~~LK~aGVdgV~vdVW-WG--iVE~~~p~~Ydws~Y~~l~~mvr~~G-LKv~v 187 (402)
+..++.|+++|++.|.+++= +. ..+. -.....++-+.+.++.++++| +++..
T Consensus 100 ~~~~~~l~~~~~~~i~isl~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~g~~~v~~ 155 (216)
T smart00729 100 EELLEALKEAGVNRVSLGVQSGSDEVLKA-INRGHTVEDVLEAVEKLREAGPIKVST 155 (216)
T ss_pred HHHHHHHHHcCCCeEEEecccCCHHHHHH-hcCCCCHHHHHHHHHHHHHhCCcceEE
Confidence 45688899999998777654 21 1111 123346799999999999999 66654
No 322
>PF02906 Fe_hyd_lg_C: Iron only hydrogenase large subunit, C-terminal domain; InterPro: IPR004108 Proteins containing this domain may be involved in the mechanism of biological hydrogen activation and contain 4FE-4S clusters. They can use molecular hydrogen for the reduction of a variety of substances.; PDB: 3LX4_A 1HFE_L 1GX7_A 1E08_A 1C4C_A 1FEH_A 3C8Y_A 1C4A_A.
Probab=23.90 E-value=72 Score=31.44 Aligned_cols=86 Identities=17% Similarity=0.213 Sum_probs=48.3
Q ss_pred HHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcC-CeEEEEEeeeccCCCCCCCccccCChhhhh
Q 015723 134 LVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELE-LKLQVVMSFHECGGNVGDDVHIPLPQWVME 212 (402)
Q Consensus 134 l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~G-LKv~vvmsFHqCGgNVGDt~~IpLP~WV~~ 212 (402)
..+=..+||++|++.| .|+=||.=- --+...+++.+..++.+ +.+ ++. .=|.||.=
T Consensus 27 ~~~l~~~Lk~lGf~~V-~d~a~gadl------~~~~~~~e~~~~~~~~~~~p~---itS-------------~CP~~V~~ 83 (285)
T PF02906_consen 27 PGQLVSALKKLGFDYV-FDTAFGADL------VILEEAEEFIERKEEGKPLPM---ITS-------------CCPGWVCY 83 (285)
T ss_dssp HHHHHHHHHHTT-SEE-EEHHHHHHH------HHHHHHHHHHHHHCCTSSSSE---E-T-------------TSHHHHHH
T ss_pred HHHHHHHHHHcCCCEE-EECHHHHHH------HHHHHHHHHHHhhcccCCCce---Eec-------------ccHHHHHH
Confidence 4445567788999987 355555311 02333445555544433 333 331 46999998
Q ss_pred hhhcCCCeEeeCCCCCccccceecccCcccccCCCCchHHHHHHHHHHH
Q 015723 213 IGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFR 261 (402)
Q Consensus 213 ~g~~~PDI~~tDr~G~rn~E~LSl~~D~~pvl~GRtp~~~Y~dfm~sF~ 261 (402)
+.+.+|+++ .+||- =++|.++-..+.+.+-
T Consensus 84 iek~~P~li----------~~ls~---------v~SP~~~~g~~~K~~~ 113 (285)
T PF02906_consen 84 IEKYYPELI----------PNLSP---------VKSPMQIMGRLIKKYF 113 (285)
T ss_dssp HHHH-GGGG----------GGB-S---------B-THHHHHHHHHTTHH
T ss_pred HHHhCcccc----------cccCC---------CccHHHHHHHHHHHHH
Confidence 889999854 34443 2688888877777643
No 323
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=23.76 E-value=2.3e+02 Score=32.57 Aligned_cols=61 Identities=15% Similarity=0.260 Sum_probs=45.2
Q ss_pred ccChHHHHHHHHHHHH--cCcceEEEeee-eeeeecCCC---ceecchHHHHHHHHHHHcCCeEEEEEe
Q 015723 128 LVDPEILVNQLKILKS--INVDGVMVDCW-WGIVEAHTP---QVYNWSGYRRLFQIVRELELKLQVVMS 190 (402)
Q Consensus 128 ~~~~~~l~~dL~~LK~--aGVdgV~vdVW-WGiVE~~~p---~~Ydws~Y~~l~~mvr~~GLKv~vvms 190 (402)
-.+.+.+.+-++.+|+ .=++++.+|++ |+. .... +..+|.--+++++-+++.|+|+++++-
T Consensus 276 ~~~e~~v~~~i~~~~~~~IP~d~~~lD~~~~~~--~~~~F~wd~~~FP~pk~mi~~l~~~Gikl~~~i~ 342 (772)
T COG1501 276 YYDEDEVLEFIDEMRERDIPLDVFVLDIDFWMD--NWGDFTWDPDRFPDPKQMIAELHEKGIKLIVIIN 342 (772)
T ss_pred cccHHHHHHHHhhcccccCcceEEEEeehhhhc--cccceEECcccCCCHHHHHHHHHhcCceEEEEec
Confidence 3467888888888865 67899999996 886 1111 122345568999999999999998765
No 324
>cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms. Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=23.71 E-value=1.2e+02 Score=28.80 Aligned_cols=36 Identities=28% Similarity=0.470 Sum_probs=28.9
Q ss_pred CCCceecchHHHHHHHHHHHc-CCeEEEEEeeeccCCCCCC
Q 015723 161 HTPQVYNWSGYRRLFQIVREL-ELKLQVVMSFHECGGNVGD 200 (402)
Q Consensus 161 ~~p~~Ydws~Y~~l~~mvr~~-GLKv~vvmsFHqCGgNVGD 200 (402)
+.++.++.+..+++++.+++. |.++++| |. ||+.|+
T Consensus 15 ~~~~~~~~~~l~~l~~~l~~l~g~~vvlV---hG-gg~~~~ 51 (252)
T cd04241 15 DRPETIREENLERIARELAEAIDEKLVLV---HG-GGSFGH 51 (252)
T ss_pred CCCCccCHHHHHHHHHHHHhccCCCEEEE---EC-CCcccC
Confidence 357789999999999999998 9999876 64 555554
No 325
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=23.62 E-value=2.4e+02 Score=31.48 Aligned_cols=20 Identities=15% Similarity=0.155 Sum_probs=10.3
Q ss_pred eecchHHHHHHHHHHHcCCe
Q 015723 165 VYNWSGYRRLFQIVRELELK 184 (402)
Q Consensus 165 ~Ydws~Y~~l~~mvr~~GLK 184 (402)
.|+=.+|.++++.+.+.|.+
T Consensus 150 ~~t~e~~~~~ak~l~~~Gad 169 (596)
T PRK14042 150 VHTLDNFLELGKKLAEMGCD 169 (596)
T ss_pred CCCHHHHHHHHHHHHHcCCC
Confidence 44555555555555555544
No 326
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=23.38 E-value=5e+02 Score=24.27 Aligned_cols=64 Identities=9% Similarity=0.069 Sum_probs=43.3
Q ss_pred cChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCccccCCh
Q 015723 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQ 208 (402)
Q Consensus 129 ~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsFHqCGgNVGDt~~IpLP~ 208 (402)
.....+.+.|+.+.+.|++.|.+ -||..+ .-..+.++++++.+.|+-+++ + .||-|... +..|.
T Consensus 109 ~~~~~~~~ai~~a~~~~~~iin~--S~g~~~-------~~~~~~~~~~~a~~~gilvV~--a----aGN~g~~~-~~~pa 172 (260)
T cd07484 109 GSLADIANGIRYAADKGAKVINL--SLGGGL-------GSTALQEAINYAWNKGVVVVA--A----AGNEGVSS-VSYPA 172 (260)
T ss_pred cCHHHHHHHHHHHHHCCCeEEEe--cCCCCC-------CCHHHHHHHHHHHHCCCEEEE--e----CCCCCCCC-CCCCC
Confidence 35667888888888888776444 377554 235688899999999887744 6 47776542 34443
No 327
>PRK13962 bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional
Probab=23.34 E-value=1.2e+02 Score=34.00 Aligned_cols=45 Identities=16% Similarity=0.148 Sum_probs=37.6
Q ss_pred HHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHH----HHHHHcCCeEEEEEe
Q 015723 136 NQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLF----QIVRELELKLQVVMS 190 (402)
Q Consensus 136 ~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~----~mvr~~GLKv~vvms 190 (402)
-.-.+||++|++.|.|+ +++++=.|..=++++ +.+.++||+.++ |
T Consensus 472 VSa~mLkd~G~~~viiG--------HSERR~~f~Etd~~V~~K~~~al~~GL~pIv--C 520 (645)
T PRK13962 472 ISGPMLAEIGVEYVIIG--------HSERRQYFGETDELVNKKVLAALKAGLTPIL--C 520 (645)
T ss_pred CCHHHHHHcCCCEEEEC--------cccccCCcCcchHHHHHHHHHHHHCCCEEEE--E
Confidence 35678999999999998 567777788878888 889999999855 7
No 328
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.06 E-value=1.4e+02 Score=21.50 Aligned_cols=54 Identities=13% Similarity=0.150 Sum_probs=37.8
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCcee--cchHHHHHHHHHHHcCCeE
Q 015723 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVY--NWSGYRRLFQIVRELELKL 185 (402)
Q Consensus 130 ~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Y--dws~Y~~l~~mvr~~GLKv 185 (402)
.+..+.+=+..|.+.|++.+++-.+ -..+ .+...+ .-+..+++.+.++++|.++
T Consensus 9 ~pG~L~~i~~~l~~~~~nI~~i~~~-~~~~-~~~~~v~~~ve~~~~~~~~L~~~G~~v 64 (65)
T cd04882 9 KPGGLHEILQILSEEGINIEYMYAF-VEKK-GGKALLIFRTEDIEKAIEVLQERGVEL 64 (65)
T ss_pred CCcHHHHHHHHHHHCCCChhheEEE-ccCC-CCeEEEEEEeCCHHHHHHHHHHCCceE
Confidence 4668899999999999999888763 1110 122222 2234889999999999876
No 329
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=23.03 E-value=1.5e+02 Score=30.07 Aligned_cols=60 Identities=18% Similarity=0.309 Sum_probs=42.0
Q ss_pred cChHHHHHHHHHHHHcCcceEEEeeeeeeeec-CCCcee-------------cchHHHHHHHHHHHcCCeEEEEEee
Q 015723 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEA-HTPQVY-------------NWSGYRRLFQIVRELELKLQVVMSF 191 (402)
Q Consensus 129 ~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~-~~p~~Y-------------dws~Y~~l~~mvr~~GLKv~vvmsF 191 (402)
=|.+.+.+-|..+|++||++|-+.=. .+. ....-| ...-.+++++.+++.|+||++=+-+
T Consensus 26 Gdl~Gi~~~LdYl~~LGv~aiwl~Pi---~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~V~ 99 (505)
T COG0366 26 GDLKGITEKLDYLKELGVDAIWLSPI---FESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDLVF 99 (505)
T ss_pred ccHHhHHHhhhHHHHhCCCEEEeCCC---CCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 35678889999999999999943221 111 122222 3566788899999999999776654
No 330
>cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain.The PLC catalytic core domain is a TIM barrel with two highl
Probab=22.86 E-value=75 Score=31.32 Aligned_cols=31 Identities=23% Similarity=0.461 Sum_probs=23.7
Q ss_pred CCcccChHHHHHHHHHHHHcCcceEEEeeeee
Q 015723 125 NCELVDPEILVNQLKILKSINVDGVMVDCWWG 156 (402)
Q Consensus 125 ~~~~~~~~~l~~dL~~LK~aGVdgV~vdVWWG 156 (402)
++++..+..++.-.++|+ .|+..|++|||=|
T Consensus 23 g~Ql~~ess~eay~~AL~-~GcR~vElDvwdg 53 (229)
T cd08592 23 GDQLSSESSLEAYARCLR-MGCRCIELDCWDG 53 (229)
T ss_pred CCccCCccCHHHHHHHHH-hCCCEEEEEeecC
Confidence 356666677776666776 9999999999943
No 331
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=22.79 E-value=1.1e+02 Score=25.49 Aligned_cols=57 Identities=9% Similarity=0.053 Sum_probs=41.2
Q ss_pred ccceeeCCCcccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEE
Q 015723 118 PLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQ 186 (402)
Q Consensus 118 PLd~V~~~~~~~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~ 186 (402)
+.|+|-+- ...+...+-+...=+.|++.|+.+. ++.- |...|++|.++++++|-++.
T Consensus 59 ~~dvvVE~---t~~~~~~~~~~~~L~~G~~VVt~nk--------~ala-~~~~~~~L~~~A~~~g~~~~ 115 (117)
T PF03447_consen 59 DIDVVVEC---TSSEAVAEYYEKALERGKHVVTANK--------GALA-DEALYEELREAARKNGVRIY 115 (117)
T ss_dssp T-SEEEE----SSCHHHHHHHHHHHHTTCEEEES-H--------HHHH-SHHHHHHHHHHHHHHT-EEE
T ss_pred CCCEEEEC---CCchHHHHHHHHHHHCCCeEEEECH--------HHhh-hHHHHHHHHHHHHHcCCEEE
Confidence 44555422 3446777777777779999999873 5667 89999999999999998874
No 332
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=22.72 E-value=1.9e+02 Score=27.13 Aligned_cols=54 Identities=15% Similarity=0.140 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecc----hHHHHHHHHHHHcCCeEEE
Q 015723 132 EILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNW----SGYRRLFQIVRELELKLQV 187 (402)
Q Consensus 132 ~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydw----s~Y~~l~~mvr~~GLKv~v 187 (402)
+.+++-++..+++|+..|. ++.|......+..=.| +.++++.+++++.|+++.+
T Consensus 84 ~~~~~~i~~a~~lg~~~i~--~~~g~~~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~l 141 (254)
T TIGR03234 84 EGVALAIAYARALGCPQVN--CLAGKRPAGVSPEEARATLVENLRYAADALDRIGLTLLI 141 (254)
T ss_pred HHHHHHHHHHHHhCCCEEE--ECcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 5677888899999999876 4555432211111112 4578899999999998844
No 333
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=22.70 E-value=2.4e+02 Score=27.14 Aligned_cols=52 Identities=10% Similarity=0.020 Sum_probs=36.6
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHc
Q 015723 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVREL 181 (402)
Q Consensus 130 ~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~ 181 (402)
+++.+.+..+.++++|+++|++++-=-.......--.+.....++++.+++.
T Consensus 109 ~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~ 160 (289)
T cd02810 109 SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAA 160 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHc
Confidence 6688899999999999999999985211111111134667788888888876
No 334
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=22.68 E-value=99 Score=31.73 Aligned_cols=57 Identities=11% Similarity=0.039 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHHcCcceEEEeee--------------------e-e--eeecCCCceecchHHHHHHHHHHHcCCeEEE
Q 015723 131 PEILVNQLKILKSINVDGVMVDCW--------------------W-G--IVEAHTPQVYNWSGYRRLFQIVRELELKLQV 187 (402)
Q Consensus 131 ~~~l~~dL~~LK~aGVdgV~vdVW--------------------W-G--iVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~v 187 (402)
-+.-.+=+++.|++|+|+|-.--| | + ..|--..-.+.|++|++|++.+++.||.+..
T Consensus 15 l~~A~~lI~~A~~aGadaVKfQt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~L~~~~~~~Gi~~~s 94 (329)
T TIGR03569 15 LELAKKLVDAAAEAGADAVKFQTFKAEDLVSKNAPKAEYQKINTGAEESQLEMLKKLELSEEDHRELKEYCESKGIEFLS 94 (329)
T ss_pred HHHHHHHHHHHHHhCCCEEEeeeCCHHHhhCcccccccccccCCcCCCcHHHHHHHhCCCHHHHHHHHHHHHHhCCcEEE
Confidence 355566677889999999976443 1 1 0111111234578999999999999999844
No 335
>cd01311 PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM). This reaction is part of the protocatechuate (PCA) 4,5-cleavage pathway. PCA is one of the most important intermediate metabolites in the bacterial pathways for various phenolic compounds, including lignin, which is the most abundant aromatic material in nature.
Probab=22.68 E-value=1.8e+02 Score=27.70 Aligned_cols=46 Identities=26% Similarity=0.283 Sum_probs=35.4
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEE
Q 015723 135 VNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQV 187 (402)
Q Consensus 135 ~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~v 187 (402)
.+.|+.+++.||-||++..-++- ..|-..+.++++.+.+.|+-+.+
T Consensus 83 ~~~l~~~~~~g~rGvRl~~~~~~-------~~~~~~~~~~~~~~~~~gl~v~~ 128 (263)
T cd01311 83 DAELKEMHDAGVRGVRFNFLFGG-------VDNKDELDEIAKRAAELGWHVQV 128 (263)
T ss_pred HHHHHHHHHCCCeEEEEecccCC-------CCCHHHHHHHHHHHHHcCCEEEE
Confidence 46777789999999998754321 12667889999999999998855
No 336
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=22.66 E-value=3.3e+02 Score=29.59 Aligned_cols=71 Identities=20% Similarity=0.245 Sum_probs=51.8
Q ss_pred CcccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCcccc
Q 015723 126 CELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIP 205 (402)
Q Consensus 126 ~~~~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsFHqCGgNVGDt~~Ip 205 (402)
-.+++.+.++..++..|++|....-.-+. +. +| +|+-.+|.++++.+.+.|.+.+. +-|+.-+.
T Consensus 126 d~lnd~~n~~~ai~~ak~~G~~~~~~i~y----t~-sp-~~t~~y~~~~a~~l~~~Gad~I~----------IkDtaG~l 189 (468)
T PRK12581 126 DALNDPRNIQQALRAVKKTGKEAQLCIAY----TT-SP-VHTLNYYLSLVKELVEMGADSIC----------IKDMAGIL 189 (468)
T ss_pred ccCCCHHHHHHHHHHHHHcCCEEEEEEEE----Ee-CC-cCcHHHHHHHHHHHHHcCCCEEE----------ECCCCCCc
Confidence 35678899999999999999875422222 11 34 78999999999999999988644 24677777
Q ss_pred CChhhhh
Q 015723 206 LPQWVME 212 (402)
Q Consensus 206 LP~WV~~ 212 (402)
.|.=+.+
T Consensus 190 ~P~~v~~ 196 (468)
T PRK12581 190 TPKAAKE 196 (468)
T ss_pred CHHHHHH
Confidence 7875554
No 337
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=22.47 E-value=1.1e+02 Score=29.94 Aligned_cols=52 Identities=15% Similarity=0.019 Sum_probs=36.4
Q ss_pred HHHHHHHHcCcceEEEeee---eeeeec-CCCceecchHHHHHHHHHHHcCCeEEE
Q 015723 136 NQLKILKSINVDGVMVDCW---WGIVEA-HTPQVYNWSGYRRLFQIVRELELKLQV 187 (402)
Q Consensus 136 ~dL~~LK~aGVdgV~vdVW---WGiVE~-~~p~~Ydws~Y~~l~~mvr~~GLKv~v 187 (402)
.++++++++|++.|++-+= .-+-+. .......+....++++++++.|+++++
T Consensus 82 ~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~ 137 (273)
T cd07941 82 PNLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIF 137 (273)
T ss_pred HHHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 5688899999999887432 101111 012244678899999999999999977
No 338
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=22.44 E-value=2.7e+02 Score=25.16 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=22.1
Q ss_pred cChHHHHHHHHHHHHcCcceEEEe
Q 015723 129 VDPEILVNQLKILKSINVDGVMVD 152 (402)
Q Consensus 129 ~~~~~l~~dL~~LK~aGVdgV~vd 152 (402)
.|+..+.++++++.++|+|.|.++
T Consensus 8 ~~~~~~~~~~~~~~~~g~d~i~~~ 31 (210)
T TIGR01163 8 ADFARLGEEVKAVEEAGADWIHVD 31 (210)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEc
Confidence 367889999999999999999998
No 339
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=22.11 E-value=1.8e+02 Score=26.32 Aligned_cols=78 Identities=9% Similarity=0.018 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCccccCChh------------hhhhhhcCCCeEeeCCC---CCccccc
Q 015723 169 SGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQW------------VMEIGQNNPEIYFTDRE---GRRNSEC 233 (402)
Q Consensus 169 s~Y~~l~~mvr~~GLKv~vvmsFHqCGgNVGDt~~IpLP~W------------V~~~g~~~PDI~~tDr~---G~rn~E~ 233 (402)
+.++++++.+++.|.+++++ .+ ++|.+ +.+..+++ ++.|.|.. ...++|+
T Consensus 95 ~~l~~li~~~~~~~~~~ill-~~-------------~~P~~~~~~~~~~~~~~~~~~a~~~-~v~~id~~~~~~~~~~~~ 159 (191)
T PRK10528 95 QTLRQIIQDVKAANAQPLLM-QI-------------RLPANYGRRYNEAFSAIYPKLAKEF-DIPLLPFFMEEVYLKPQW 159 (191)
T ss_pred HHHHHHHHHHHHcCCCEEEE-Ee-------------ecCCcccHHHHHHHHHHHHHHHHHh-CCCccHHHHHhhccCHhh
Confidence 67888999999999887553 21 23322 12223333 35554421 1111111
Q ss_pred eecccCcccccCCCCc-hHHHHHHHHHHHHHHhhhhc
Q 015723 234 LTWGIDKERVLRGRTA-VEVYFDYMRSFRVEFNEFFV 269 (402)
Q Consensus 234 LSl~~D~~pvl~GRtp-~~~Y~dfm~sF~~~fa~~~~ 269 (402)
+ . .+|-+| .+-|+-+.+.+.+++.++++
T Consensus 160 ~--~------~DGiHpn~~Gy~~~A~~i~~~l~~~~~ 188 (191)
T PRK10528 160 M--Q------DDGIHPNRDAQPFIADWMAKQLQPLVN 188 (191)
T ss_pred c--C------CCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 1 1 368888 58899999999999998875
No 340
>cd01298 ATZ_TRZ_like TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases. Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD.
Probab=22.07 E-value=2.3e+02 Score=27.92 Aligned_cols=44 Identities=18% Similarity=0.202 Sum_probs=31.1
Q ss_pred cCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEEEEeeeccCC
Q 015723 144 INVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGG 196 (402)
Q Consensus 144 aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsFHqCGg 196 (402)
.|++.+.+.+ -+..+..++=+.+.++++.++++|+.+ ..|.|+.
T Consensus 174 ~~~~~~k~~~-----~~~~~~~~~~~~l~~~~~~A~~~g~~v----~~H~~e~ 217 (411)
T cd01298 174 AADGRIRVAL-----APHAPYTCSDELLREVAELAREYGVPL----HIHLAET 217 (411)
T ss_pred CCCCceEEEE-----eCCCCccCCHHHHHHHHHHHHHcCCcE----EEEecCC
Confidence 3566665532 233455566788999999999999987 6687764
No 341
>KOG4013 consensus Predicted Cu2+ homeostasis protein CutC [Inorganic ion transport and metabolism]
Probab=21.98 E-value=1.1e+02 Score=30.41 Aligned_cols=70 Identities=17% Similarity=0.387 Sum_probs=47.8
Q ss_pred CCccEEEeecc---ceeeCCCcccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeE
Q 015723 109 PYVPVYVMLPL---GIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKL 185 (402)
Q Consensus 109 ~~vpvyVMlPL---d~V~~~~~~~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv 185 (402)
-..|+|+|+-- |.|-++. .-.++.+|++.||.+|.||... |.+- .+|..|=..-+.+++.++ +|.|
T Consensus 58 ~~iP~ycMiRpR~GDFvYsd~---Em~a~~~Dv~llk~~GAdGfVF----GaLt--~dgsid~~~C~si~~~~r--plPV 126 (255)
T KOG4013|consen 58 YPIPLYCMIRPRAGDFVYSDD---EMAANMEDVELLKKAGADGFVF----GALT--SDGSIDRTSCQSIIETAR--PLPV 126 (255)
T ss_pred cccceEEEEecCCCCcccchH---HHHHHHHHHHHHHHcCCCceEE----eecC--CCCCcCHHHHHHHHHhcC--CCce
Confidence 34899999843 2332221 1247889999999999999754 4444 378888888888877765 5555
Q ss_pred EEEEeeec
Q 015723 186 QVVMSFHE 193 (402)
Q Consensus 186 ~vvmsFHq 193 (402)
.||.
T Consensus 127 ----TFHR 130 (255)
T KOG4013|consen 127 ----TFHR 130 (255)
T ss_pred ----eeee
Confidence 6663
No 342
>PRK05927 hypothetical protein; Provisional
Probab=21.89 E-value=79 Score=32.42 Aligned_cols=59 Identities=10% Similarity=0.112 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHcCcceEE---Eeee-eeeeecCCCceecchHHHHHHHHHHHcCCeEEEEEe
Q 015723 132 EILVNQLKILKSINVDGVM---VDCW-WGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMS 190 (402)
Q Consensus 132 ~~l~~dL~~LK~aGVdgV~---vdVW-WGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvms 190 (402)
...+++|++||++|++.++ ..+. --.-..-.|+++..+...+.++.+++.||++-.=|=
T Consensus 144 ~~~~e~l~~Lk~aGl~~l~g~~~Et~~~~~~~~~~p~k~~~~~rl~~i~~A~~lGi~~~sg~l 206 (350)
T PRK05927 144 ISTEQALERLWDAGQRTIPGGGAEILSERVRKIISPKKMGPDGWIQFHKLAHRLGFRSTATMM 206 (350)
T ss_pred CCHHHHHHHHHHcCcccCCCCCchhCCHHHhhccCCCCCCHHHHHHHHHHHHHcCCCcCceeE
Confidence 3568899999999997443 2222 222233458888888999999999999999954333
No 343
>cd08594 PI-PLCc_eta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding motif,
Probab=21.83 E-value=2.5e+02 Score=27.83 Aligned_cols=64 Identities=19% Similarity=0.350 Sum_probs=42.7
Q ss_pred CcccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceec---ch---HHHHHHHHHHHcCCe-----EEEEEeee
Q 015723 126 CELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYN---WS---GYRRLFQIVRELELK-----LQVVMSFH 192 (402)
Q Consensus 126 ~~~~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Yd---ws---~Y~~l~~mvr~~GLK-----v~vvmsFH 192 (402)
+++.-+...+.-.++| ..|+-.|++|||=| +...|-.|- .. .++++++.|++.+.+ |++.|--|
T Consensus 24 ~Ql~~~ss~e~Y~~aL-~~GcRcvElD~wdg--~~~ePvV~HG~tlts~i~f~dv~~aI~~~AF~~s~yPvIlSlE~H 98 (227)
T cd08594 24 DQLLSQSRVDMYARVL-QAGCRCVEVDCWDG--PDGEPVVHHGYTLTSKILFRDVIETINKYAFIKNEYPVILSIENH 98 (227)
T ss_pred CcccCcccHHHHHHHH-HhCCcEEEEEeecC--CCCCcEEeeCCCcccCcCHHHHHHHHHHhhccCCCCCEEEEeccc
Confidence 4565555666666777 78999999999966 222344443 11 378999999998665 55555555
No 344
>PRK14905 triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional
Probab=21.62 E-value=1.6e+02 Score=30.66 Aligned_cols=44 Identities=11% Similarity=0.086 Sum_probs=35.1
Q ss_pred HHHHHHHcCcceEEEeeeeeeeecCCCceecchHHH----HHHHHHHHcCCeEEEEEe
Q 015723 137 QLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYR----RLFQIVRELELKLQVVMS 190 (402)
Q Consensus 137 dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~----~l~~mvr~~GLKv~vvms 190 (402)
.-.+||++|++.|.|+ +++++=.|..=+ +-+..+.++||+.++ |
T Consensus 87 S~~mL~d~G~~~viiG--------HSERR~~f~Etd~~i~~Kv~~al~~gl~pIv--C 134 (355)
T PRK14905 87 SPLMLKELGIELVMIG--------HSERRHVLKETDQEENEKVLAALKHGFITLL--C 134 (355)
T ss_pred CHHHHHHcCCCEEEEC--------cccccCcccccHHHHHHHHHHHHHCCCEEEE--E
Confidence 4578999999999998 567777787777 455568889999855 7
No 345
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=21.59 E-value=2.4e+02 Score=31.25 Aligned_cols=52 Identities=8% Similarity=0.026 Sum_probs=32.8
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEEEEee
Q 015723 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSF 191 (402)
Q Consensus 130 ~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsF 191 (402)
+.+.++.++++.+++||+.|++-.--.-+ ....+.++.++++|+.+++.+|+
T Consensus 94 pd~vv~~~v~~A~~~Gvd~irif~~lnd~----------~n~~~~i~~ak~~G~~v~~~i~~ 145 (592)
T PRK09282 94 PDDVVEKFVEKAAENGIDIFRIFDALNDV----------RNMEVAIKAAKKAGAHVQGTISY 145 (592)
T ss_pred cchhhHHHHHHHHHCCCCEEEEEEecChH----------HHHHHHHHHHHHcCCEEEEEEEe
Confidence 34566777777777777776665542222 34566667777777777766653
No 346
>cd08629 PI-PLCc_delta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta1 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This subfamily corresponds to the catalytic domain
Probab=21.55 E-value=2.4e+02 Score=28.43 Aligned_cols=64 Identities=19% Similarity=0.456 Sum_probs=44.4
Q ss_pred CcccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceec-ch-----HHHHHHHHHHHcCCe-----EEEEEeee
Q 015723 126 CELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYN-WS-----GYRRLFQIVRELELK-----LQVVMSFH 192 (402)
Q Consensus 126 ~~~~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Yd-ws-----~Y~~l~~mvr~~GLK-----v~vvmsFH 192 (402)
+++.-+...+.-.++|+ .|+-.|++|||=| +..+|-.|- +. .++++++.|++...+ |++.|--|
T Consensus 24 ~Ql~~~ss~e~y~~aL~-~GcRcvElD~wdg--~~~eP~V~HG~tlts~i~f~~v~~~I~~~AF~~S~yPvIlsLE~H 98 (258)
T cd08629 24 DQLTGPSSTEAYIRALC-KGCRCLELDCWDG--PNQEPIIYHGYTFTSKILFCDVLRAIRDYAFKASPYPVILSLENH 98 (258)
T ss_pred CccCCccCHHHHHHHHH-hCCcEEEEEeecC--CCCCcEEeeCCCCccCcCHHHHHHHHHHHhccCCCCCEEEEeecc
Confidence 45666666677777776 8999999999966 222344443 12 588999999998765 66655555
No 347
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=21.48 E-value=3e+02 Score=24.76 Aligned_cols=42 Identities=17% Similarity=0.080 Sum_probs=32.6
Q ss_pred HHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEEE
Q 015723 136 NQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVV 188 (402)
Q Consensus 136 ~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vv 188 (402)
..++.++++|+++|.+.. |+ .+ ....++++.++++|+++.+.
T Consensus 68 ~~~~~~~~aGad~i~~h~-----~~-~~-----~~~~~~i~~~~~~g~~~~v~ 109 (202)
T cd04726 68 LEAEMAFKAGADIVTVLG-----AA-PL-----STIKKAVKAAKKYGKEVQVD 109 (202)
T ss_pred HHHHHHHhcCCCEEEEEe-----eC-CH-----HHHHHHHHHHHHcCCeEEEE
Confidence 356889999999999873 32 11 35678999999999999763
No 348
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=21.47 E-value=2.1e+02 Score=27.51 Aligned_cols=53 Identities=21% Similarity=0.196 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEE
Q 015723 133 ILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQV 187 (402)
Q Consensus 133 ~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~v 187 (402)
..+-+...|+..||.||.+|.==-+|+= ++.+.=...++-++-++++|+||.+
T Consensus 15 v~~i~~~~L~~~Gikgvi~DlDNTLv~w--d~~~~tpe~~~W~~e~k~~gi~v~v 67 (175)
T COG2179 15 VFDITPDILKAHGIKGVILDLDNTLVPW--DNPDATPELRAWLAELKEAGIKVVV 67 (175)
T ss_pred HhhCCHHHHHHcCCcEEEEeccCceecc--cCCCCCHHHHHHHHHHHhcCCEEEE
Confidence 4555678899999999999975333332 2333344677789999999999965
No 349
>PF07615 Ykof: YKOF-related Family; InterPro: IPR011522 This entry represents YkoF-related proteins. YkoF is involved in the hydroxymethyl pyrimidine (HMP) salvage pathway []. The domain is found in pairs in these proteins.; PDB: 1S7H_A 1S99_A 1SBR_B.
Probab=21.45 E-value=1.8e+02 Score=23.91 Aligned_cols=56 Identities=7% Similarity=0.047 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEEEEe
Q 015723 132 EILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMS 190 (402)
Q Consensus 132 ~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvms 190 (402)
+.+...|++++..|+...+.+.- -.+. ++-.--|+.++++++.+.+.|=+++....
T Consensus 18 ~~I~~~i~~~~~~gl~~~t~~~s-T~l~--G~~~~Vf~~l~~~~~~a~~~~~H~v~~~T 73 (81)
T PF07615_consen 18 DVILGAIDRLDDSGLWVETDHYS-TQLR--GDEEDVFDALEAAFERAAEEGPHVVMVVT 73 (81)
T ss_dssp HHHHHHHHHCHHTTSEEEEETTE-EEEE--CBHHHHHHHHHHHHHHHHCCSSSEEEEEE
T ss_pred HHHHHHHHHHhhcCcEEeecccE-EEEE--CCHHHHHHHHHHHHHHHhccCCeEEEEEE
Confidence 68999999999999998877644 2233 34455899999999999999877754433
No 350
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=21.41 E-value=2.4e+02 Score=26.06 Aligned_cols=47 Identities=19% Similarity=0.161 Sum_probs=36.1
Q ss_pred HHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEEEE
Q 015723 136 NQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVM 189 (402)
Q Consensus 136 ~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvm 189 (402)
.+.+.+|+.||+.|.|=+- |+ ..|.=..|.+-++-++++||++=+..
T Consensus 16 ~dw~~vk~~Gi~faiikat----eG---~~~~D~~~~~n~~~A~~aGl~vG~Yh 62 (192)
T cd06522 16 ADYNKLKNYGVKAVIVKLT----EG---TTYRNPYAASQIANAKAAGLKVSAYH 62 (192)
T ss_pred HHHHHHHHcCCCEEEEEEc----CC---CCccChHHHHHHHHHHHCCCeeEEEE
Confidence 4678999999999999873 22 23444678899999999999876543
No 351
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=21.39 E-value=1.2e+02 Score=31.04 Aligned_cols=59 Identities=17% Similarity=0.317 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCcc
Q 015723 133 ILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVH 203 (402)
Q Consensus 133 ~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsFHqCGgNVGDt~~ 203 (402)
.++.=++.||++|++.. + ..-+|++ | +.+-.+++++++++.+..+++-+. ||.|.|+..
T Consensus 37 ~~~~v~~~L~~~gi~~~---~-f~~v~~~-p---~~~~v~~~~~~~~~~~~D~IIaiG----GGS~iD~AK 95 (398)
T cd08178 37 YVDKVIDVLKRRGVETE---V-FSDVEPD-P---SLETVRKGLELMNSFKPDTIIALG----GGSPMDAAK 95 (398)
T ss_pred cHHHHHHHHHHCCCeEE---E-ecCCCCC-c---CHHHHHHHHHHHHhcCCCEEEEeC----CccHHHHHH
Confidence 45555677888887643 3 3345552 2 788999999999999999876444 778888865
No 352
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=21.28 E-value=4e+02 Score=22.85 Aligned_cols=56 Identities=13% Similarity=0.149 Sum_probs=38.7
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEEEEee
Q 015723 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSF 191 (402)
Q Consensus 130 ~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsF 191 (402)
..+.+.+.++.++++|.-.|.+.+.-|+- ..+...+.++++.+++.|.+-+.+..+
T Consensus 134 ~~~~~~~~i~~~~~~g~~~v~~~~~~g~~------~~~~~~~~~~~~~~~~~~~~~i~~~~~ 189 (216)
T smart00729 134 TVEDVLEAVEKLREAGPIKVSTDLIVGLP------GETEEDFEETLKLLKELGPDRVSIFPL 189 (216)
T ss_pred CHHHHHHHHHHHHHhCCcceEEeEEecCC------CCCHHHHHHHHHHHHHcCCCeEEeeee
Confidence 45888899999999995223433333333 126788999999999999984444443
No 353
>PRK09993 C-lysozyme inhibitor; Provisional
Probab=21.26 E-value=72 Score=29.91 Aligned_cols=30 Identities=20% Similarity=0.405 Sum_probs=21.4
Q ss_pred EeeCCCCCcccccee-cccCcccccCCCCch
Q 015723 221 YFTDREGRRNSECLT-WGIDKERVLRGRTAV 250 (402)
Q Consensus 221 ~~tDr~G~rn~E~LS-l~~D~~pvl~GRtp~ 250 (402)
++++.+.+...|-|+ |++|+.+-.+|||.+
T Consensus 105 vlv~vd~k~~~~~l~WL~~~d~~sidg~tvl 135 (153)
T PRK09993 105 VFSTIDEKTSQEKLTWLNVNDALSIDGKTVL 135 (153)
T ss_pred EEEEcCCCcChhheeeecCCCCcccccceee
Confidence 334555555668888 588888888999964
No 354
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=21.22 E-value=2.6e+02 Score=27.60 Aligned_cols=52 Identities=15% Similarity=0.298 Sum_probs=39.2
Q ss_pred cChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEE
Q 015723 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQV 187 (402)
Q Consensus 129 ~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~v 187 (402)
.+.+.+.+.++.+++.|+..|.+- | ...| .+++..|.++++.+++.+.++.+
T Consensus 36 ls~eeI~~~~~~~~~~G~~~i~l~---g---g~~~-~~~~~~~~~i~~~Ik~~~~~i~~ 87 (309)
T TIGR00423 36 LSLEEILEKVKEAVAKGATEVCIQ---G---GLNP-QLDIEYYEELFRAIKQEFPDVHI 87 (309)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEe---c---CCCC-CCCHHHHHHHHHHHHHHCCCceE
Confidence 356788888999999999988773 1 1123 36788999999999999766543
No 355
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=21.17 E-value=1.1e+02 Score=29.87 Aligned_cols=45 Identities=7% Similarity=0.131 Sum_probs=33.4
Q ss_pred HHHHHHHHcCCeEEEEEeeeccCCCCCCCccccCChhhhhhhhcCCCeEeeCCCCCc
Q 015723 173 RLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRR 229 (402)
Q Consensus 173 ~l~~mvr~~GLKv~vvmsFHqCGgNVGDt~~IpLP~WV~~~g~~~PDI~~tDr~G~r 229 (402)
.+++.+.+.|++|+-+ |+ ...+|+.|+.... .++.++|++.+|+.
T Consensus 25 ~~~~~l~~~g~~v~~~--~~---------~p~~l~g~~~~~~-~~~~i~Y~t~dg~y 69 (251)
T PRK11657 25 APVKALEKQGITIIKT--FD---------APGGLKGYAAKYQ-DMGVTIYLTPDGKH 69 (251)
T ss_pred HHHHHHHhCCCEEEEe--ec---------CCCCceEEEEEeC-CCceEEEEcCCCCE
Confidence 4566778889999775 42 2247999998653 46779999999973
No 356
>cd08598 PI-PLC1c_yeast Catalytic domain of putative yeast phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of putative phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) encoded by PLC1 genes from yeasts, which are homologs of the delta isoforms of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The prototype of this CD is protein Plc1p encoded by PLC1 genes fro
Probab=21.10 E-value=1.8e+02 Score=28.68 Aligned_cols=64 Identities=16% Similarity=0.277 Sum_probs=44.0
Q ss_pred CCcccChHHHHHHHHHHHHcCcceEEEeee-eeeeecCCCcee---cch---HHHHHHHHHHHcCCe-----EEEEEeee
Q 015723 125 NCELVDPEILVNQLKILKSINVDGVMVDCW-WGIVEAHTPQVY---NWS---GYRRLFQIVRELELK-----LQVVMSFH 192 (402)
Q Consensus 125 ~~~~~~~~~l~~dL~~LK~aGVdgV~vdVW-WGiVE~~~p~~Y---dws---~Y~~l~~mvr~~GLK-----v~vvmsFH 192 (402)
++++......+.-.++|+ .|+-.|++||| -..-|| -.| .+. .++++++.|++...+ |++.|--|
T Consensus 23 g~Ql~~~ss~~~y~~aL~-~GcRcvElD~wdg~~~ep---~V~HG~t~ts~i~f~dv~~~Ik~~aF~~s~yPvILslE~H 98 (231)
T cd08598 23 GRQLAGDSSVEGYIRALQ-RGCRCVEIDVWDGDDGEP---VVTHGYTLTSSVPFRDVCRAIKKYAFVTSPYPLILSLEVH 98 (231)
T ss_pred CCccCCccCHHHHHHHHH-hCCcEEEEEeecCCCCCc---EEeeCCCCcCceEHHHHHHHHHHHhccCCCCCEEEEEecC
Confidence 456666666776677774 59999999999 443443 333 344 478999999998765 66666656
No 357
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=21.09 E-value=2.5e+02 Score=25.49 Aligned_cols=105 Identities=21% Similarity=0.256 Sum_probs=65.0
Q ss_pred cChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCccccCCh
Q 015723 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQ 208 (402)
Q Consensus 129 ~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsFHqCGgNVGDt~~IpLP~ 208 (402)
.+.+...+.|+.+-+.|+|||-+... +=+....+++.++++|++|+.+.+- ..
T Consensus 39 ~d~~~q~~~i~~~i~~~~d~Iiv~~~------------~~~~~~~~l~~~~~~gIpvv~~d~~-----------~~---- 91 (257)
T PF13407_consen 39 NDPEEQIEQIEQAISQGVDGIIVSPV------------DPDSLAPFLEKAKAAGIPVVTVDSD-----------EA---- 91 (257)
T ss_dssp TTHHHHHHHHHHHHHTTESEEEEESS------------STTTTHHHHHHHHHTTSEEEEESST-----------HH----
T ss_pred CCHHHHHHHHHHHHHhcCCEEEecCC------------CHHHHHHHHHHHhhcCceEEEEecc-----------cc----
Confidence 46688889999999999999865432 2244568899999999999764441 00
Q ss_pred hhhhhhhcCCCeEee--C--CCCCcccccee-ccc--CcccccCCCCchHHHHHHHHHHHHHHhh
Q 015723 209 WVMEIGQNNPEIYFT--D--REGRRNSECLT-WGI--DKERVLRGRTAVEVYFDYMRSFRVEFNE 266 (402)
Q Consensus 209 WV~~~g~~~PDI~~t--D--r~G~rn~E~LS-l~~--D~~pvl~GRtp~~~Y~dfm~sF~~~fa~ 266 (402)
...+.+.+. | +.|..-.+++. ..- .++-++.|........+.++.|++.|++
T Consensus 92 ------~~~~~~~~v~~d~~~~G~~~a~~l~~~~~~~~~v~~~~~~~~~~~~~~r~~g~~~~l~~ 150 (257)
T PF13407_consen 92 ------PDSPRAAYVGTDNYEAGKLAAEYLAEKLGAKGKVLILSGSPGNPNTQERLEGFRDALKE 150 (257)
T ss_dssp ------TTSTSSEEEEE-HHHHHHHHHHHHHHHHTTTEEEEEEESSTTSHHHHHHHHHHHHHHHH
T ss_pred ------ccccceeeeeccHHHHHHHHHHHHHHHhccCceEEeccCCCCchHHHHHHHHHHHHHhh
Confidence 011111111 1 11333334443 111 2333456777788888999999999999
No 358
>cd08212 RuBisCO_large_I Ribulose bisphosphate carboxylase large chain, Form I. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form I is the most abundant class, present in plants, algae, and bacteria, and forms large complexes composed of 8 large and 8 small subunits.
Probab=21.04 E-value=2e+02 Score=30.95 Aligned_cols=52 Identities=17% Similarity=0.199 Sum_probs=39.1
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEEEEeee
Q 015723 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFH 192 (402)
Q Consensus 130 ~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsFH 192 (402)
+.+.+.+..+..+++|.++|||++.+| |+..+.|.+.+++.+|-|+.=-++|
T Consensus 224 ~~~em~~ra~~a~~~G~~~~mv~~~~G-----------~~~l~~l~~~a~~~~l~IhaHrA~~ 275 (450)
T cd08212 224 TMEEMYKRAEFAKELGSPIIMHDLLTG-----------FTAIQSLAKWCRDNGMLLHLHRAGH 275 (450)
T ss_pred CHHHHHHHHHHHHHhCCCeEeeecccc-----------cchHHHHHHHhhhcCceEEeccccc
Confidence 478999999999999999999996553 4556777777778777765533333
No 359
>PF11871 DUF3391: Domain of unknown function (DUF3391); InterPro: IPR021812 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is typically between 122 to 139 amino acids in length. This domain is found associated with PF01966 from PFAM.
Probab=21.01 E-value=95 Score=26.17 Aligned_cols=19 Identities=16% Similarity=0.384 Sum_probs=16.4
Q ss_pred HHHHHHHHHcCcceEEEee
Q 015723 135 VNQLKILKSINVDGVMVDC 153 (402)
Q Consensus 135 ~~dL~~LK~aGVdgV~vdV 153 (402)
+++|++||+.||..|.||.
T Consensus 38 ~~~I~~L~~~gi~~V~Id~ 56 (128)
T PF11871_consen 38 QADIEKLRRLGIQEVYIDP 56 (128)
T ss_pred HHHHHHHHHCCCcEEEEEC
Confidence 4678889999999999984
No 360
>cd08631 PI-PLCc_delta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta4 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which
Probab=21.00 E-value=2.6e+02 Score=28.18 Aligned_cols=65 Identities=20% Similarity=0.336 Sum_probs=44.1
Q ss_pred CCcccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceec-chH-----HHHHHHHHHHcCCe-----EEEEEeee
Q 015723 125 NCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYN-WSG-----YRRLFQIVRELELK-----LQVVMSFH 192 (402)
Q Consensus 125 ~~~~~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Yd-ws~-----Y~~l~~mvr~~GLK-----v~vvmsFH 192 (402)
++++.-+...+.-.++|+ .|+-.|++|||=| +...|-.|- |.. ++++++.|++...+ |++.|--|
T Consensus 23 g~Ql~~~ss~e~y~~aL~-~GcRcvElD~wdg--~~~eP~V~HG~tlts~i~f~~v~~~Ik~~AF~~s~yPvIlslE~H 98 (258)
T cd08631 23 EDQLRGQSSVEGYIRALK-RGCRCVEVDVWDG--PNGEPIVYHGHTFTSKILFKDVVAAVAQYAFQVSDYPVILSLENH 98 (258)
T ss_pred CCcccCccCHHHHHHHHH-cCCcEEEEEeecC--CCCCcEEeeCCcccCCcCHHHHHHHHHHHhccCCCCCEEEEeecc
Confidence 356666667777777777 5999999999966 222233332 222 89999999998776 55545444
No 361
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=20.98 E-value=3.4e+02 Score=29.67 Aligned_cols=77 Identities=16% Similarity=0.216 Sum_probs=48.8
Q ss_pred cceeeCCCcccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEEEEeeeccCCCC
Q 015723 119 LGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNV 198 (402)
Q Consensus 119 Ld~V~~~~~~~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsFHqCGgNV 198 (402)
.|++-....++|.+.++..++++|++|..+.-.=++-. +| .++-.+|.++++.+.+.|.+.+- +
T Consensus 111 idi~RIfd~lndv~nl~~ai~~vk~ag~~~~~~i~yt~-----sp-~~t~e~~~~~a~~l~~~Gad~I~----------I 174 (499)
T PRK12330 111 MDVFRVFDALNDPRNLEHAMKAVKKVGKHAQGTICYTV-----SP-IHTVEGFVEQAKRLLDMGADSIC----------I 174 (499)
T ss_pred CCEEEEEecCChHHHHHHHHHHHHHhCCeEEEEEEEec-----CC-CCCHHHHHHHHHHHHHcCCCEEE----------e
Confidence 34444444566778888888888888875421112211 12 57888888888888888887543 2
Q ss_pred CCCccccCChhhh
Q 015723 199 GDDVHIPLPQWVM 211 (402)
Q Consensus 199 GDt~~IpLP~WV~ 211 (402)
-|+.-+-.|.=+.
T Consensus 175 kDtaGll~P~~~~ 187 (499)
T PRK12330 175 KDMAALLKPQPAY 187 (499)
T ss_pred CCCccCCCHHHHH
Confidence 4666677776443
No 362
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=20.82 E-value=2.7e+02 Score=27.77 Aligned_cols=49 Identities=6% Similarity=0.141 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHcCcceEEEeeeeeeeecCCCcee-------cchHHHHHHHHHHHcCC-eEE
Q 015723 133 ILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVY-------NWSGYRRLFQIVRELEL-KLQ 186 (402)
Q Consensus 133 ~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Y-------dws~Y~~l~~mvr~~GL-Kv~ 186 (402)
.+.+.++.|+++|++.|.|.+ +.-.+..| +|.--.+.++.++++|+ ++.
T Consensus 102 ll~~~~~~L~~aGl~~v~ISl-----Ds~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~ 158 (329)
T PRK13361 102 RLARFAAELADAGLKRLNISL-----DTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIK 158 (329)
T ss_pred HHHHHHHHHHHcCCCeEEEEe-----ccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceE
Confidence 345678899999999887754 22122222 46666777778888998 443
No 363
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=20.82 E-value=2.8e+02 Score=27.89 Aligned_cols=43 Identities=12% Similarity=0.180 Sum_probs=35.2
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEE
Q 015723 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQ 186 (402)
Q Consensus 130 ~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~ 186 (402)
..+++++-.+.||++|+++|-+.- + ...-+.++++.+.|+-|.
T Consensus 91 ~e~a~~na~rl~~eaGa~aVkiEg--------g------~~~~~~i~~l~~~gIpV~ 133 (263)
T TIGR00222 91 PEQALKNAARVMQETGANAVKLEG--------G------EWLVETVQMLTERGVPVV 133 (263)
T ss_pred HHHHHHHHHHHHHHhCCeEEEEcC--------c------HhHHHHHHHHHHCCCCEE
Confidence 567999999999999999998742 1 445677899999999985
No 364
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=20.82 E-value=3.9e+02 Score=25.18 Aligned_cols=71 Identities=24% Similarity=0.268 Sum_probs=44.4
Q ss_pred cChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecc---------hHHHHHHHHHHHcCCeEEEEEeeeccCCCCC
Q 015723 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNW---------SGYRRLFQIVRELELKLQVVMSFHECGGNVG 199 (402)
Q Consensus 129 ~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydw---------s~Y~~l~~mvr~~GLKv~vvmsFHqCGgNVG 199 (402)
.....|.+.|+...+.|++.|.+- ||..... +..+.| +...+.++.+.+.|+=+ |.+ -||-|
T Consensus 88 ~~~~~~~~ai~~a~~~~v~VIn~S--~G~~~~~-~~~~~~~~~~~~~~~~~l~~a~~~a~~~gilv--v~A----AGN~g 158 (261)
T cd07493 88 VEEDNWVAAAEWADSLGVDIISSS--LGYTTFD-NPTYSYTYADMDGKTSFISRAANIAASKGMLV--VNS----AGNEG 158 (261)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEeC--CCcCCCC-CcccccccccccccchHHHHHHHHHHhCCeEE--EEE----CCCCC
Confidence 355677788888889999887644 7766542 222222 24567788888888755 335 36766
Q ss_pred CCc--cccCCh
Q 015723 200 DDV--HIPLPQ 208 (402)
Q Consensus 200 Dt~--~IpLP~ 208 (402)
... .+..|.
T Consensus 159 ~~~~~~~~~Pa 169 (261)
T cd07493 159 STQWKGIGAPA 169 (261)
T ss_pred CCCCCcccCcc
Confidence 553 344443
No 365
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=20.79 E-value=1.2e+02 Score=34.18 Aligned_cols=59 Identities=20% Similarity=0.222 Sum_probs=47.0
Q ss_pred cChHHHHHHHHHHHHcCcceEEEeeeeeeeecCC--Cce-----ecc---hHHHHHHHHHHHcCCeEEE
Q 015723 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEAHT--PQV-----YNW---SGYRRLFQIVRELELKLQV 187 (402)
Q Consensus 129 ~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~--p~~-----Ydw---s~Y~~l~~mvr~~GLKv~v 187 (402)
+.++.|+++|+.||+.|.+.|+++.+-....... |.+ ||= +.|..++.++++.|++...
T Consensus 69 Vspe~Fe~qL~~Lk~nGY~~ISl~el~~~~~g~~~LP~K~VaLTFDDGy~s~yt~A~PILkkygvpATf 137 (671)
T PRK14582 69 VRTSALREQFAWLRENGYQPVSVAQILEAHRGGKPLPEKAVLLTFDDGYSSFYTRVFPILQAFQWPAVW 137 (671)
T ss_pred cCHHHHHHHHHHHHHCcCEEccHHHHHHHHhcCCCCCCCeEEEEEEcCCCchHHHHHHHHHHcCCCEEE
Confidence 5789999999999999999999999976555421 222 332 6788999999999999744
No 366
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=20.73 E-value=3.8e+02 Score=29.36 Aligned_cols=99 Identities=17% Similarity=0.207 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCccccCChhhhh
Q 015723 133 ILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVME 212 (402)
Q Consensus 133 ~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsFHqCGgNVGDt~~IpLP~WV~~ 212 (402)
-=..-|++|-+.|.+.|-| +..|..|.. =..+..+.+.++++||.+.. . ..+.-|.++..
T Consensus 11 ~a~~~l~~L~~~~~~i~~V-----~t~pd~~~~--~~~~~~v~~~a~~~~ip~~~--~-----------~~~~~~~~~~~ 70 (660)
T PRK08125 11 IGCVGIEALLAAGYEIAAV-----FTHTDNPGE--NHFFGSVARLAAELGIPVYA--P-----------EDVNHPLWVER 70 (660)
T ss_pred HHHHHHHHHHHCCCcEEEE-----EeCCCCCcC--CCCcCHHHHHHHHcCCcEEe--e-----------CCCCcHHHHHH
Confidence 3345677887788775532 123323322 23445788889999999854 1 23445677766
Q ss_pred hhhcCCCeEeeCCCCCccc-c--------ceecccCcccccCCCCchH
Q 015723 213 IGQNNPEIYFTDREGRRNS-E--------CLTWGIDKERVLRGRTAVE 251 (402)
Q Consensus 213 ~g~~~PDI~~tDr~G~rn~-E--------~LSl~~D~~pvl~GRtp~~ 251 (402)
..+..||++++=-.|+.-+ + +|.+-.=-+|-++|+.|++
T Consensus 71 l~~~~~D~iv~~~~~~ii~~~il~~~~~g~iN~H~slLP~yRG~~p~~ 118 (660)
T PRK08125 71 IRELAPDVIFSFYYRNLLSDEILQLAPAGAFNLHGSLLPKYRGRAPLN 118 (660)
T ss_pred HHhcCCCEEEEccccccCCHHHHhhcCCCEEEEeCCcccCCCCcCHHH
Confidence 6678999998887777665 2 3444444567777777644
No 367
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=20.68 E-value=3e+02 Score=27.75 Aligned_cols=60 Identities=12% Similarity=0.115 Sum_probs=37.4
Q ss_pred eCCCcccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCcee--------cchHHHHHHHHHHHcCCeEEEEEee
Q 015723 123 DMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVY--------NWSGYRRLFQIVRELELKLQVVMSF 191 (402)
Q Consensus 123 ~~~~~~~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Y--------dws~Y~~l~~mvr~~GLKv~vvmsF 191 (402)
..|+.+.+.+. ++.|+++|++.|.|.+= ...+..+ .|.--.+.++++++.|+++.+.+..
T Consensus 96 ~TNG~ll~~~~----~~~L~~~g~~~v~iSld-----g~~~e~~d~irg~~g~f~~~~~~i~~l~~~g~~v~i~~vv 163 (378)
T PRK05301 96 ITSGVGLTEAR----LAALKDAGLDHIQLSFQ-----DSDPELNDRLAGTKGAFAKKLAVARLVKAHGYPLTLNAVI 163 (378)
T ss_pred ECCCccCCHHH----HHHHHHcCCCEEEEEec-----CCCHHHHHHHcCCCchHHHHHHHHHHHHHCCCceEEEEEe
Confidence 33566666554 56788999998877642 1111111 3555666778889999998764443
No 368
>cd08625 PI-PLCc_beta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 3. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=20.62 E-value=2.4e+02 Score=28.22 Aligned_cols=67 Identities=15% Similarity=0.304 Sum_probs=47.0
Q ss_pred CCcccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCcee---cch---HHHHHHHHHHHcCCe-----EEEEEeee
Q 015723 125 NCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVY---NWS---GYRRLFQIVRELELK-----LQVVMSFH 192 (402)
Q Consensus 125 ~~~~~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Y---dws---~Y~~l~~mvr~~GLK-----v~vvmsFH 192 (402)
++++.-+...+.-.++|+ .|+-.|++|||=|.-...+|-.| .+. .++++++.|++...+ |++.|--|
T Consensus 23 g~Ql~~~ss~e~y~~aL~-~GcRcvElD~wdg~~~~~eP~v~Hg~t~t~~i~f~dv~~~I~~~aF~~s~yPvIlslE~H 100 (258)
T cd08625 23 AGQLTGLSSVEMYRQVLL-TGCRCIELDCWKGRPPEEEPFITHGFTMTTEIPFKDVIEAIAESAFKTSPYPVILSFENH 100 (258)
T ss_pred CCccCCccCHHHHHHHHH-cCCCEEEEEecCCCCCCCCCEEeeCCccccCcCHHHHHHHHHHHhccCCCCCEEEEehhc
Confidence 356777777888888885 99999999999553211234444 222 478999999997665 76666666
No 369
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=20.45 E-value=96 Score=33.35 Aligned_cols=59 Identities=7% Similarity=0.082 Sum_probs=28.0
Q ss_pred EEEeeccceeeCCCcccChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEE
Q 015723 113 VYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQV 187 (402)
Q Consensus 113 vyVMlPLd~V~~~~~~~~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~v 187 (402)
.++|+|||++ +.|.+-|+=|=--+.|-+.+=.-.....-=..=.++++.+++.|...++
T Consensus 283 pn~v~PlD~L----------------reLekEG~IG~L~~~fyst~G~gt~~~~a~~~g~eIa~~Lk~dgVDAVI 341 (431)
T TIGR01918 283 PDRVVPVDVL----------------RDYEKEGKIGELHEYFYSTVGNGTTVAESKQFAKEFVVELKQGGVDAVI 341 (431)
T ss_pred CCeeeeHHHH----------------HHHHHcCCcccccCeeEEcCCCCchHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 3778888774 4455555544444444444332111111113334555555555555543
No 370
>PRK06988 putative formyltransferase; Provisional
Probab=20.43 E-value=3.9e+02 Score=26.85 Aligned_cols=97 Identities=15% Similarity=0.172 Sum_probs=57.1
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCccccCChhhhhhh
Q 015723 135 VNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIG 214 (402)
Q Consensus 135 ~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsFHqCGgNVGDt~~IpLP~WV~~~g 214 (402)
..-|++|-+.|++.+-| +..+..|.. =..+..+.+.++++||.+.. . ..+.-+.++....
T Consensus 15 ~~~L~~L~~~~~~i~~V-----vt~~d~~~~--~~~~~~v~~~A~~~gip~~~--~-----------~~~~~~~~~~~l~ 74 (312)
T PRK06988 15 VRCLQVLLARGVDVALV-----VTHEDNPTE--NIWFGSVAAVAAEHGIPVIT--P-----------ADPNDPELRAAVA 74 (312)
T ss_pred HHHHHHHHhCCCCEEEE-----EcCCCCCcc--CcCCCHHHHHHHHcCCcEEc--c-----------ccCCCHHHHHHHH
Confidence 44677777778775543 233323322 12334678889999999743 1 2233455555455
Q ss_pred hcCCCeEeeCCCCCccc-c--------ceecccCcccccCCCCchH
Q 015723 215 QNNPEIYFTDREGRRNS-E--------CLTWGIDKERVLRGRTAVE 251 (402)
Q Consensus 215 ~~~PDI~~tDr~G~rn~-E--------~LSl~~D~~pvl~GRtp~~ 251 (402)
+.+||++++=..|+.-+ + ++.+-.=-+|-++|..|++
T Consensus 75 ~~~~Dliv~~~~~~iip~~il~~~~~g~iNiHpslLP~yRG~~pi~ 120 (312)
T PRK06988 75 AAAPDFIFSFYYRHMIPVDLLALAPRGAYNMHGSLLPKYRGRVPVN 120 (312)
T ss_pred hcCCCEEEEehhccccCHHHHhcCCCCEEEeeCccccCCCCcCHHH
Confidence 77899988887777665 2 3333333466667766654
No 371
>PRK08005 epimerase; Validated
Probab=20.43 E-value=1.2e+02 Score=29.33 Aligned_cols=44 Identities=18% Similarity=0.166 Sum_probs=34.3
Q ss_pred ChHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCcee--cchHHHHHHHHHHHc
Q 015723 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVY--NWSGYRRLFQIVREL 181 (402)
Q Consensus 130 ~~~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Y--dws~Y~~l~~mvr~~ 181 (402)
|...++++|++|+++|++-+.+||= +|.| |.+.=-++++.+++.
T Consensus 11 d~~~l~~el~~l~~~g~d~lHiDvM--------DG~FVPN~tfG~~~i~~l~~~ 56 (210)
T PRK08005 11 DPLRYAEALTALHDAPLGSLHLDIE--------DTSFINNITFGMKTIQAVAQQ 56 (210)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecc--------CCCcCCccccCHHHHHHHHhc
Confidence 6789999999999999999999984 5555 555555666666663
No 372
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=20.42 E-value=1.5e+02 Score=30.57 Aligned_cols=45 Identities=13% Similarity=0.203 Sum_probs=36.4
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeecCC-------CceecchHHHHHHHHHHHcCCe
Q 015723 135 VNQLKILKSINVDGVMVDCWWGIVEAHT-------PQVYNWSGYRRLFQIVRELELK 184 (402)
Q Consensus 135 ~~dL~~LK~aGVdgV~vdVWWGiVE~~~-------p~~Ydws~Y~~l~~mvr~~GLK 184 (402)
.+.|+.||++||+-|.++| |... .+.++-....+.+++++++|++
T Consensus 115 ~e~l~~l~~~GvnrislGv-----QS~~d~~L~~l~R~~~~~~~~~ai~~l~~~G~~ 166 (400)
T PRK07379 115 LEQLQGYRSLGVNRVSLGV-----QAFQDELLALCGRSHRVKDIFAAVDLIHQAGIE 166 (400)
T ss_pred HHHHHHHHHCCCCEEEEEc-----ccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCC
Confidence 3678999999999999986 3322 3456777888999999999998
No 373
>PF04015 DUF362: Domain of unknown function (DUF362) ; InterPro: IPR007160 This domain is found in some iron-sulphur proteins.
Probab=20.42 E-value=1.1e+02 Score=28.05 Aligned_cols=58 Identities=19% Similarity=0.280 Sum_probs=40.8
Q ss_pred CcccChHHHHHHHHHHHHcCcceEEEeee-eeeeecCCCceecchHHHHHHHHHHHcCCeEEE
Q 015723 126 CELVDPEILVNQLKILKSINVDGVMVDCW-WGIVEAHTPQVYNWSGYRRLFQIVRELELKLQV 187 (402)
Q Consensus 126 ~~~~~~~~l~~dL~~LK~aGVdgV~vdVW-WGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~v 187 (402)
+..++|+.+++=++.||++|+.-|.|.+= +.--+. ....|...+|.++.+ +.|.+++-
T Consensus 17 ~~~T~P~vv~avv~~l~~~g~~~i~i~e~~~~~~~~-~~~~~~~~G~~~~~~---~~g~~~v~ 75 (206)
T PF04015_consen 17 GATTHPEVVRAVVEMLKEAGAKEIIIAESPGSGAAD-TREVFKRSGYEEIAE---EYGAELVD 75 (206)
T ss_pred CccCCHHHHHHHHHHHHHcCCCceEEEeCCCcchHh-HHHHHHHcchhhHHH---hcCCcEEE
Confidence 44679999999999999999986777654 222111 345577777777665 67877643
No 374
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=20.38 E-value=2.3e+02 Score=26.83 Aligned_cols=51 Identities=6% Similarity=0.122 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeeee-ecCCCceecch----HHHHHHHHHHHcCCeE
Q 015723 132 EILVNQLKILKSINVDGVMVDCWWGIV-EAHTPQVYNWS----GYRRLFQIVRELELKL 185 (402)
Q Consensus 132 ~~l~~dL~~LK~aGVdgV~vdVWWGiV-E~~~p~~Ydws----~Y~~l~~mvr~~GLKv 185 (402)
+.+++-++..|++|+..|.+ .+|.. +...+.+ .|. ..+++.+++++.|+++
T Consensus 85 ~~~~~~i~~a~~lga~~i~~--~~g~~~~~~~~~~-~~~~~~~~l~~l~~~a~~~Gv~l 140 (258)
T PRK09997 85 DGVAAAIRYARALGNKKINC--LVGKTPAGFSSEQ-IHATLVENLRYAANMLMKEDILL 140 (258)
T ss_pred HHHHHHHHHHHHhCCCEEEE--CCCCCCCCCCHHH-HHHHHHHHHHHHHHHHHHcCCEE
Confidence 55788889999999998865 34433 1111111 133 4477888899999887
No 375
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=20.37 E-value=3.4e+02 Score=32.58 Aligned_cols=80 Identities=14% Similarity=0.077 Sum_probs=55.0
Q ss_pred cceeeCCCcccChHHHHHHHHHHHHcCcceEEEeee-ee-eeecCCCceecchHHHHHHHHHHHcCCeEEEEEeeeccCC
Q 015723 119 LGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCW-WG-IVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGG 196 (402)
Q Consensus 119 Ld~V~~~~~~~~~~~l~~dL~~LK~aGVdgV~vdVW-WG-iVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsFHqCGg 196 (402)
+|++-....|++-+.++..++++|++|. -++..+= =| ++.+ .--+|+..+|.++++.+.+.|...+.
T Consensus 639 idifrifD~lN~~~n~~~~~~~~~~~g~-~~~~~i~yt~~~~d~-~~~~~~l~y~~~~ak~l~~~Gad~I~--------- 707 (1143)
T TIGR01235 639 IDIFRVFDSLNWVENMRVGMDAVAEAGK-VVEAAICYTGDILDP-ARPKYDLKYYTNLAVELEKAGAHILG--------- 707 (1143)
T ss_pred CCEEEECccCcCHHHHHHHHHHHHHcCC-EEEEEEEEeccCCCc-CCCCCCHHHHHHHHHHHHHcCCCEEE---------
Confidence 4555555567888999999999999997 4444444 33 3444 33489999999999999999987543
Q ss_pred CCCCCccccCChhh
Q 015723 197 NVGDDVHIPLPQWV 210 (402)
Q Consensus 197 NVGDt~~IpLP~WV 210 (402)
+-|+.-+-.|.=+
T Consensus 708 -ikDt~Gll~P~~~ 720 (1143)
T TIGR01235 708 -IKDMAGLLKPAAA 720 (1143)
T ss_pred -ECCCcCCcCHHHH
Confidence 2355555556533
No 376
>cd06359 PBP1_Nba_like Type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway. This group includes the type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.
Probab=20.29 E-value=5e+02 Score=24.92 Aligned_cols=43 Identities=16% Similarity=0.131 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCC--eEEE
Q 015723 132 EILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELEL--KLQV 187 (402)
Q Consensus 132 ~~l~~dL~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GL--Kv~v 187 (402)
..+...+.+||+++.|.|.+-. ++ ...-.+++-+++.|+ ++.+
T Consensus 173 ~d~~~~i~~l~~~~pd~v~~~~-~~------------~~~~~~~~~~~~~G~~~~~~~ 217 (333)
T cd06359 173 LDFSAELAQIRAAKPDAVFVFL-PG------------GMGVNFVKQYRQAGLKKDIPL 217 (333)
T ss_pred cchHHHHHHHHhCCCCEEEEEc-cC------------ccHHHHHHHHHHcCcccCCee
Confidence 3577788999999999998721 11 114567788899999 6543
No 377
>PF01183 Glyco_hydro_25: Glycosyl hydrolases family 25; InterPro: IPR002053 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 25 GH25 from CAZY comprises enzymes with only one known activity; lysozyme (3.2.1.17 from EC). It has been shown [, ] that a number of cell-wall lytic enzymes are evolutionary related and can be classified into a single family. Two residues, an aspartate and a glutamate, have been shown [] to be important for the catalytic activity of the Charalopsis enzyme. These residues as well as some others in their vicinity are conserved in all proteins from this family.; GO: 0003796 lysozyme activity, 0009253 peptidoglycan catabolic process, 0016998 cell wall macromolecule catabolic process; PDB: 1JFX_A 2WW5_A 2WWD_A 2WWC_A 2X8R_D 2J8F_A 1OBA_A 2IXU_A 2J8G_A 2IXV_A ....
Probab=20.28 E-value=1.5e+02 Score=26.55 Aligned_cols=109 Identities=13% Similarity=0.095 Sum_probs=60.2
Q ss_pred HHHHHHcCcceEEEeeeeeeeecCCCceecchHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCccccCChhhhhhhhcC
Q 015723 138 LKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNN 217 (402)
Q Consensus 138 L~~LK~aGVdgV~vdVWWGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~vvmsFHqCGgNVGDt~~IpLP~WV~~~g~~~ 217 (402)
..++|+.||+.|.+=+.=|.- |.=..|.+-++.++++||++-+..-++.| |..|. ..-=.++.+..+
T Consensus 12 w~~~k~~gi~fviikateG~~-------~~D~~~~~n~~~a~~aGl~~G~Yhf~~~~--~~~~a--~~qA~~f~~~~~-- 78 (181)
T PF01183_consen 12 WQKVKAAGIDFVIIKATEGTS-------YVDPYFESNIKNAKAAGLPVGAYHFARAT--NSSDA--EAQADYFLNQVK-- 78 (181)
T ss_dssp HHHHHHTTEEEEEEEEEETTT-------EE-TTHHHHHHHHHHTTSEEEEEEE--TT--THCHH--HHHHHHHHHCTH--
T ss_pred HHHHHHCCCCEEEEEeeeCCC-------eecchHHHHHHHHHHcCCeEEEEEEeccC--CcccH--HHHHHHHHHHhc--
Confidence 677799999999998853321 33346888889999999998664443322 22110 111123332221
Q ss_pred CCeEeeCCCCCccccceecccCcccccCCCCchHHHHHHHHHHHHHHhhhhc
Q 015723 218 PEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFV 269 (402)
Q Consensus 218 PDI~~tDr~G~rn~E~LSl~~D~~pvl~GRtp~~~Y~dfm~sF~~~fa~~~~ 269 (402)
+. ....+-++.|-+--...........+.++.|.+++....|
T Consensus 79 ---------~~-~~~~~~~~lD~E~~~~~~~~~~~~~~~~~~f~~~~~~~~G 120 (181)
T PF01183_consen 79 ---------GG-DPGDLPPALDVEDDKSNNPSKSDNTAWVKAFLDEVEKAAG 120 (181)
T ss_dssp ---------TS-STSCS-EEEEE-S-GGCCSSHHHHHHHHHHHHHHHHHHCT
T ss_pred ---------cc-CCCcceEEEeccccccCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 11 1112223344321122334478888999999999976554
No 378
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=20.18 E-value=1.6e+02 Score=29.20 Aligned_cols=44 Identities=23% Similarity=0.277 Sum_probs=35.3
Q ss_pred CCCccEEEeeccceeeCCCcccChHHHHHHHHHHHHcC-------------cceEEE
Q 015723 108 TPYVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSIN-------------VDGVMV 151 (402)
Q Consensus 108 ~~~vpvyVMlPLd~V~~~~~~~~~~~l~~dL~~LK~aG-------------VdgV~v 151 (402)
-+..+|++++|...-+.++..+.++.+...|..|+..+ +-|||+
T Consensus 236 ~p~~Kv~iG~pa~~~aa~~gyv~~~~l~~~i~~l~~~~~~~~~~~~~~y~~~gGvm~ 292 (312)
T cd02871 236 LPADKVVIGLPASPSAAGGGYVSPSEVIKALDCLMKGTNCGSYYPAGGYPSLRGLMT 292 (312)
T ss_pred CChhhEEEeccCCCCccCCCccCHHHHHHHHHHHhcCCCCCcccCCCCCCCcceEEE
Confidence 45568999999875544456789999999999999864 889987
No 379
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=20.15 E-value=40 Score=30.23 Aligned_cols=65 Identities=22% Similarity=0.169 Sum_probs=38.5
Q ss_pred ccCCCCCCCCcccccchhhccCCCCCCcccCCCCCCccEEEeeccceeeCCCcccChHHHHHHHHHHHHcCcceEE
Q 015723 75 TEDDPHGGDSVDAADDMKAVHLPPKLPERDFAGTPYVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVM 150 (402)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vpvyVMlPLd~V~~~~~~~~~~~l~~dL~~LK~aGVdgV~ 150 (402)
...+-+.++++-......+..+...+.+.... .+|+.|.-.+- +.++.++.+.++||++||+.|=
T Consensus 49 ~~adiVglS~L~t~~~~~~~~~~~~l~~~gl~---~v~vivGG~~~--------i~~~d~~~~~~~L~~~Gv~~vf 113 (128)
T cd02072 49 TDADAILVSSLYGHGEIDCKGLREKCDEAGLK---DILLYVGGNLV--------VGKQDFEDVEKRFKEMGFDRVF 113 (128)
T ss_pred cCCCEEEEeccccCCHHHHHHHHHHHHHCCCC---CCeEEEECCCC--------CChhhhHHHHHHHHHcCCCEEE
Confidence 34444444554444444444444444443332 36777754332 3667888899999999999873
No 380
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=20.06 E-value=1.7e+02 Score=28.17 Aligned_cols=48 Identities=17% Similarity=0.192 Sum_probs=34.1
Q ss_pred HHHHHHHHcCcceEEEeee--eeeeecCCCceecchHHHHHHHHHHHcCCeEEE
Q 015723 136 NQLKILKSINVDGVMVDCW--WGIVEAHTPQVYNWSGYRRLFQIVRELELKLQV 187 (402)
Q Consensus 136 ~dL~~LK~aGVdgV~vdVW--WGiVE~~~p~~Ydws~Y~~l~~mvr~~GLKv~v 187 (402)
..|..|++..+|.|.+|-- ..+.+. .. +-.-.+.+++++++.|++|++
T Consensus 162 ssl~~L~~l~~d~iKID~~fi~~i~~~-~~---~~~iv~~iv~la~~l~~~vva 211 (256)
T COG2200 162 SSLSYLKRLPPDILKIDRSFVRDLETD-AR---DQAIVRAIVALAHKLGLTVVA 211 (256)
T ss_pred HHHHHHhhCCCCeEEECHHHHhhcccC-cc---hHHHHHHHHHHHHHCCCEEEE
Confidence 4555566666788888876 445544 22 337788999999999999977
Done!