Query 015724
Match_columns 402
No_of_seqs 178 out of 598
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 17:34:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015724.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015724hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3n2f_G Na+/K+ ATPase gamma sub 24.8 14 0.00047 24.3 -0.2 28 92-119 4-31 (31)
2 1jb0_J Photosystem 1 reaction 12.4 1.6E+02 0.0054 20.4 2.8 21 318-338 8-28 (41)
3 2jo1_A Phospholemman; FXYD1, N 11.9 92 0.0032 24.1 1.6 30 92-121 10-39 (72)
4 2jp3_A FXYD domain-containing 10.4 92 0.0031 23.8 1.1 30 92-121 11-40 (67)
5 1pw4_A Glycerol-3-phosphate tr 9.7 6.2E+02 0.021 23.3 7.0 61 315-382 64-125 (451)
6 4aps_A DI-OR tripeptide H+ sym 9.2 5.3E+02 0.018 24.4 6.5 51 313-363 319-369 (491)
7 2zxe_G FXYD10, phospholemman-l 9.0 95 0.0033 24.1 0.7 30 92-121 13-42 (74)
8 3arc_B Photosystem II core lig 8.2 6.5E+02 0.022 26.0 6.7 43 356-399 206-257 (504)
9 3o7q_A L-fucose-proton symport 6.9 4.7E+02 0.016 24.1 4.8 45 316-365 64-108 (438)
10 1pw4_A Glycerol-3-phosphate tr 6.7 1.3E+03 0.046 20.9 8.1 24 316-339 291-314 (451)
No 1
>3n2f_G Na+/K+ ATPase gamma subunit transcript variant A; sodium-potassium pump, P-type ATPase, cardiotonic steroids,; HET: PHD; 4.10A {Sus scrofa} PDB: 3n23_G*
Probab=24.80 E-value=14 Score=24.27 Aligned_cols=28 Identities=21% Similarity=0.386 Sum_probs=22.9
Q ss_pred ccCCCCCchhHHHHHHHHHHHHHHHHHh
Q 015724 92 HSPWNGCTLADFVMPFFLFIVGVAIALA 119 (402)
Q Consensus 92 Ha~W~G~t~aDlVfP~FlFivGvSi~lS 119 (402)
|-.|+.+....+++-..+|++|+.+.+|
T Consensus 4 ~yDy~tLrigGLi~a~vLfi~gi~iils 31 (31)
T 3n2f_G 4 YYDYETVRNGGLIFAALAFIVGLIIILS 31 (31)
T ss_dssp CCCHHHHHHHHTTTHHHHHHHHHHHHTC
T ss_pred CCChHHHhhcchhHHHHHHHHHHHHhcC
Confidence 4567777788899999999999988765
No 2
>1jb0_J Photosystem 1 reaction centre subunit IX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.18.1 PDB: 3pcq_J*
Probab=12.37 E-value=1.6e+02 Score=20.42 Aligned_cols=21 Identities=24% Similarity=0.197 Sum_probs=18.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHh
Q 015724 318 LSTISAILSGTIGIHYGHVLI 338 (402)
Q Consensus 318 LStlpAi~t~llG~~aG~~L~ 338 (402)
|||-|-+++..+++.||-++.
T Consensus 8 LstAPVla~~w~~~tAg~lIE 28 (41)
T 1jb0_J 8 LSTAPVLAAIWMTITAGILIE 28 (41)
T ss_dssp TTBHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHHH
Confidence 899999999999999997763
No 3
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=11.94 E-value=92 Score=24.07 Aligned_cols=30 Identities=23% Similarity=0.481 Sum_probs=25.0
Q ss_pred ccCCCCCchhHHHHHHHHHHHHHHHHHhcc
Q 015724 92 HSPWNGCTLADFVMPFFLFIVGVAIALALK 121 (402)
Q Consensus 92 Ha~W~G~t~aDlVfP~FlFivGvSi~lS~~ 121 (402)
|-.|+-+...-|||-..+|++|+.+-+|-+
T Consensus 10 ~YDY~tLRiGGLifA~vLfi~GI~iilS~K 39 (72)
T 2jo1_A 10 TYDYQSLQIGGLVIAGILFILGILIVLSRR 39 (72)
T ss_dssp GCSTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHhhccchHHHHHHHHHHHHHHHcCc
Confidence 345666667889999999999999999974
No 4
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=10.36 E-value=92 Score=23.81 Aligned_cols=30 Identities=30% Similarity=0.492 Sum_probs=25.1
Q ss_pred ccCCCCCchhHHHHHHHHHHHHHHHHHhcc
Q 015724 92 HSPWNGCTLADFVMPFFLFIVGVAIALALK 121 (402)
Q Consensus 92 Ha~W~G~t~aDlVfP~FlFivGvSi~lS~~ 121 (402)
|=.|+-+...-|||-..+|++|+.+-+|-+
T Consensus 11 ~YDY~tLRigGLifA~vLfi~GI~iilS~k 40 (67)
T 2jp3_A 11 YYDWESLQLGGLIFGGLLCIAGIALALSGK 40 (67)
T ss_dssp GGGGHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred ccchHHheecchhhHHHHHHHHHHHHHcCc
Confidence 345666778889999999999999999974
No 5
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=9.67 E-value=6.2e+02 Score=23.32 Aligned_cols=61 Identities=13% Similarity=0.118 Sum_probs=37.6
Q ss_pred CchhhhhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhhCCCccc-ccCCCchhHH
Q 015724 315 EGLLSTISAILSGTIGIHYGHVLIHFKGHSARLKHWVSMGFGLLIIAIILHFTNAIPI-NKQLYSFSYV 382 (402)
Q Consensus 315 EGlLStlpAi~t~llG~~aG~~L~~~~~~~~rl~~~l~~G~~ll~lG~ll~~~~~~Pi-NK~LWT~SfV 382 (402)
-|++.++..+...+.....|.+..+.. + ++++..|.++..+|.++.. ..|. ..+.|..-..
T Consensus 64 ~g~~~~~~~~~~~~~~~~~G~l~dr~g--~---r~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~ 125 (451)
T 1pw4_A 64 LGFALSGISIAYGFSKFIMGSVSDRSN--P---RVFLPAGLILAAAVMLFMG--FVPWATSSIAVMFVL 125 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSC--H---HHHHHHHHHHHHHHHHHHH--HCHHHHSSSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhcC--c---hHHHHHHHHHHHHHHHHHH--hhhhccccHHHHHHH
Confidence 478888899999888899998765432 1 2355666666666665532 1222 4566654433
No 6
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=9.23 E-value=5.3e+02 Score=24.36 Aligned_cols=51 Identities=6% Similarity=0.133 Sum_probs=30.6
Q ss_pred CCCchhhhhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHH
Q 015724 313 EPEGLLSTISAILSGTIGIHYGHVLIHFKGHSARLKHWVSMGFGLLIIAII 363 (402)
Q Consensus 313 DPEGlLStlpAi~t~llG~~aG~~L~~~~~~~~rl~~~l~~G~~ll~lG~l 363 (402)
.+-|++.++.++...+.+...|.+..+...++....+.+..|.++..++++
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~ 369 (491)
T 4aps_A 319 FPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFL 369 (491)
T ss_dssp SCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHT
T ss_pred cCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHH
Confidence 456888999999999989888886644322222222333455555555544
No 7
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=8.97 E-value=95 Score=24.15 Aligned_cols=30 Identities=20% Similarity=0.337 Sum_probs=25.4
Q ss_pred ccCCCCCchhHHHHHHHHHHHHHHHHHhcc
Q 015724 92 HSPWNGCTLADFVMPFFLFIVGVAIALALK 121 (402)
Q Consensus 92 Ha~W~G~t~aDlVfP~FlFivGvSi~lS~~ 121 (402)
|=.|+-+...-|||-..+|++|+.+-+|-+
T Consensus 13 ~YDY~tLRigGLifA~vLfi~GI~iilS~k 42 (74)
T 2zxe_G 13 TYDYYRLRVVGLIVAAVLCVIGIIILLAGK 42 (74)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ccchHHheeccchhHHHHHHHHHHHHHcCc
Confidence 445666778899999999999999999975
No 8
>3arc_B Photosystem II core light harvesting protein CP47; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_B* 1s5l_B* 1w5c_B* 2axt_B* 3bz2_B* 3kzi_B* 3prq_B* 3prr_B* 3a0b_B* 3a0h_B* 1izl_B*
Probab=8.19 E-value=6.5e+02 Score=25.96 Aligned_cols=43 Identities=21% Similarity=0.075 Sum_probs=28.4
Q ss_pred HHHHHHHHHhhCCCccc--c-c--CCCc----hhHHHHHhHHHHHHHHHHHHh
Q 015724 356 GLLIIAIILHFTNAIPI--N-K--QLYS----FSYVCFTAGAAGIVFSALYVL 399 (402)
Q Consensus 356 ~ll~lG~ll~~~~~~Pi--N-K--~LWT----~SfVL~T~G~a~llLa~~y~l 399 (402)
.+.++|.+||.. .=|- - | .+|| +||.|-..+++.++-+.++|.
T Consensus 206 ~l~I~GGiwHI~-trP~~~~~r~~~~~SgEA~LSySLaava~~gFiAA~~~Wy 257 (504)
T 3arc_B 206 IVGIIAGLFHIL-VRPPQRLYKALRMGNIETVLSSSIAAVFFAAFVVAGTMWY 257 (504)
T ss_dssp HHHHHHHHHHHH-SCCBHHHHHHTTTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhEEEEe-eCchHHHHHhhhcccHhhhhcccHHHHHHHHHHHhhheee
Confidence 445778888864 2332 1 2 3688 688888888888777766653
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=6.88 E-value=4.7e+02 Score=24.09 Aligned_cols=45 Identities=20% Similarity=0.152 Sum_probs=30.1
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHh
Q 015724 316 GLLSTISAILSGTIGIHYGHVLIHFKGHSARLKHWVSMGFGLLIIAIILH 365 (402)
Q Consensus 316 GlLStlpAi~t~llG~~aG~~L~~~~~~~~rl~~~l~~G~~ll~lG~ll~ 365 (402)
|++.++..+..++.....|.+..+.. + ++.+..|.++..++.++.
T Consensus 64 g~~~~~~~~~~~i~~~~~G~l~dr~g--~---r~~l~~~~~~~~~~~~~~ 108 (438)
T 3o7q_A 64 GLIQSAFYFGYFIIPIPAGILMKKLS--Y---KAGIITGLFLYALGAALF 108 (438)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHSC--H---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhc--c---hHHHHHHHHHHHHHHHHH
Confidence 68888888888888899998775432 2 233555666655655543
No 10
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=6.72 E-value=1.3e+03 Score=20.92 Aligned_cols=24 Identities=4% Similarity=-0.187 Sum_probs=17.4
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhc
Q 015724 316 GLLSTISAILSGTIGIHYGHVLIH 339 (402)
Q Consensus 316 GlLStlpAi~t~llG~~aG~~L~~ 339 (402)
|++.++.++..++..+.+|.+..+
T Consensus 291 ~~~~~~~~~~~~~~~~~~g~l~~~ 314 (451)
T 1pw4_A 291 SWAYFLYEYAGIPGTLLCGWMSDK 314 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777777777776654
Done!