Query 015724
Match_columns 402
No_of_seqs 178 out of 598
Neff 5.4
Searched_HMMs 13730
Date Mon Mar 25 17:34:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015724.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/015724hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jb0j_ f.23.18.1 (J:) Subunit 18.5 42 0.003 21.6 2.8 20 318-337 8-27 (41)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 8.9 4.4E+02 0.032 21.7 7.9 25 316-340 288-312 (447)
3 d1axda1 a.45.1.1 (A:81-210) Cl 8.4 62 0.0045 23.8 1.4 23 90-112 69-95 (129)
4 d2axtt1 f.23.34.1 (T:1-30) Pho 8.2 1.4E+02 0.01 17.4 2.6 15 378-392 3-17 (30)
5 d1v54c_ f.25.1.1 (C:) Mitochon 7.1 6.1E+02 0.044 21.1 10.0 75 311-386 121-200 (259)
6 d1pw4a_ f.38.1.1 (A:) Glycerol 6.1 3.8E+02 0.028 22.2 5.9 26 315-340 61-86 (447)
7 d1pv7a_ f.38.1.2 (A:) Lactose 5.4 5.7E+02 0.041 20.2 6.5 75 316-400 262-336 (417)
8 d1fftc_ f.25.1.1 (C:) Cytochro 5.3 3.7E+02 0.027 21.1 5.1 18 369-386 109-126 (185)
9 d1m56c_ f.25.1.1 (C:) Bacteria 5.2 7.6E+02 0.056 20.3 10.1 18 369-386 189-206 (265)
10 d2r6gg1 f.58.1.1 (G:7-296) Mal 4.9 3E+02 0.022 22.8 4.3 35 317-351 84-118 (290)
No 1
>d1jb0j_ f.23.18.1 (J:) Subunit IX of photosystem I reaction centre, PsaJ {Synechococcus elongatus [TaxId: 32046]}
Probab=18.53 E-value=42 Score=21.62 Aligned_cols=20 Identities=25% Similarity=0.252 Sum_probs=18.6
Q ss_pred hhhhHHHHHHHHHHHHHHHH
Q 015724 318 LSTISAILSGTIGIHYGHVL 337 (402)
Q Consensus 318 LStlpAi~t~llG~~aG~~L 337 (402)
|||-|-+++..+++.||-++
T Consensus 8 lstAPVla~~w~~~tAG~lI 27 (41)
T d1jb0j_ 8 LSTAPVLAAIWMTITAGILI 27 (41)
T ss_dssp TTBHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHH
Confidence 89999999999999999776
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=8.85 E-value=4.4e+02 Score=21.72 Aligned_cols=25 Identities=4% Similarity=-0.178 Sum_probs=14.8
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhcc
Q 015724 316 GLLSTISAILSGTIGIHYGHVLIHF 340 (402)
Q Consensus 316 GlLStlpAi~t~llG~~aG~~L~~~ 340 (402)
+.+.++..+..++..+.+|.+..+.
T Consensus 288 ~~~~~~~~~~~~~~~~~~g~~~~~~ 312 (447)
T d1pw4a_ 288 SWAYFLYEYAGIPGTLLCGWMSDKV 312 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhhcchhhhhhhhhhhhhhhhhc
Confidence 4566666666666666666655443
No 3
>d1axda1 a.45.1.1 (A:81-210) Class phi GST {Maize (Zea mays), type I [TaxId: 4577]}
Probab=8.36 E-value=62 Score=23.75 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=16.5
Q ss_pred ccccCC---CCCchhHHH-HHHHHHHH
Q 015724 90 IDHSPW---NGCTLADFV-MPFFLFIV 112 (402)
Q Consensus 90 l~Ha~W---~G~t~aDlV-fP~FlFiv 112 (402)
+++.+| +.+|++|+. +|.+..+.
T Consensus 69 L~~~~~l~Gd~~TlADi~~~~~~~~~~ 95 (129)
T d1axda1 69 LTKCKYLAGDFLSLADLNHVSVTLCLF 95 (129)
T ss_dssp HHHCSSSSSSSCCHHHHTTHHHHHHHT
T ss_pred HccccccccCccccccHHHHHHHHHHH
Confidence 556677 678999995 67666654
No 4
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=8.18 E-value=1.4e+02 Score=17.43 Aligned_cols=15 Identities=20% Similarity=0.344 Sum_probs=8.9
Q ss_pred chhHHHHHhHHHHHH
Q 015724 378 SFSYVCFTAGAAGIV 392 (402)
Q Consensus 378 T~SfVL~T~G~a~ll 392 (402)
|..||++-+.+-.++
T Consensus 3 ~i~yv~ifac~i~lf 17 (30)
T d2axtt1 3 TITYVFIFACIIALF 17 (30)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHH
Confidence 456787766544443
No 5
>d1v54c_ f.25.1.1 (C:) Mitochondrial cytochrome c oxidase, subunit III {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.11 E-value=6.1e+02 Score=21.11 Aligned_cols=75 Identities=12% Similarity=0.247 Sum_probs=41.3
Q ss_pred CCCCCchhhhhHHHHHHHHHHHHHHHHhc-ccchhHHHHHHHHHHHHHHHHHHHHh---h-CCCcccccCCCchhHHHHH
Q 015724 311 PFEPEGLLSTISAILSGTIGIHYGHVLIH-FKGHSARLKHWVSMGFGLLIIAIILH---F-TNAIPINKQLYSFSYVCFT 385 (402)
Q Consensus 311 ~fDPEGlLStlpAi~t~llG~~aG~~L~~-~~~~~~rl~~~l~~G~~ll~lG~ll~---~-~~~~PiNK~LWT~SfVL~T 385 (402)
+.||.++ ..+++++...-|+.+..-... +++++++.++++...+++.++-.... + ...+.++.+.+.++|-+.|
T Consensus 121 ~~~~~~l-pllnT~vLl~Ss~t~~~A~~~~~~~~~~~~~~~l~~t~~lg~~Fl~~q~~Ey~~~~~~~~~~~~gS~ff~lT 199 (259)
T d1v54c_ 121 PLNPLEV-PLLNTSVLLASGVSITWAHHSLMEGDRKHMLQALFITITLGVYFTLLQASEYYEAPFTISDGVYGSTFFVAT 199 (259)
T ss_dssp CCCTTSH-HHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCTTSHHHHHHHHHHH
T ss_pred ccchhhh-HHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCCccCCCcchHHHHHH
Confidence 3455543 345555555555544433322 23445556666666655554444332 1 1256778888888887776
Q ss_pred h
Q 015724 386 A 386 (402)
Q Consensus 386 ~ 386 (402)
+
T Consensus 200 G 200 (259)
T d1v54c_ 200 G 200 (259)
T ss_dssp H
T ss_pred H
Confidence 5
No 6
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=6.09 E-value=3.8e+02 Score=22.22 Aligned_cols=26 Identities=19% Similarity=0.022 Sum_probs=20.6
Q ss_pred CchhhhhHHHHHHHHHHHHHHHHhcc
Q 015724 315 EGLLSTISAILSGTIGIHYGHVLIHF 340 (402)
Q Consensus 315 EGlLStlpAi~t~llG~~aG~~L~~~ 340 (402)
-|++.++..+..++.....|.+..+.
T Consensus 61 ~g~~~s~~~~~~~~~~~~~G~l~Dr~ 86 (447)
T d1pw4a_ 61 LGFALSGISIAYGFSKFIMGSVSDRS 86 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 37888888888888888888877543
No 7
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=5.43 E-value=5.7e+02 Score=20.16 Aligned_cols=75 Identities=9% Similarity=-0.009 Sum_probs=0.0
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhhCCCcccccCCCchhHHHHHhHHHHHHHHH
Q 015724 316 GLLSTISAILSGTIGIHYGHVLIHFKGHSARLKHWVSMGFGLLIIAIILHFTNAIPINKQLYSFSYVCFTAGAAGIVFSA 395 (402)
Q Consensus 316 GlLStlpAi~t~llG~~aG~~L~~~~~~~~rl~~~l~~G~~ll~lG~ll~~~~~~PiNK~LWT~SfVL~T~G~a~llLa~ 395 (402)
+...++.+++..+.+...|++.. +...++.+..+.++..++.++ ++...+.|......+..|.+.-....
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~l~~-----r~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~g~~~~~~~~ 331 (417)
T d1pv7a_ 262 GYVTTMGELLNASIMFFAPLIIN-----RIGGKNALLLAGTIMSVRIIG-----SSFATSALEVVILKTLHMFEVPFLLV 331 (417)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHH-----HHCHHHHHHHHHHHHHHHHHH-----HHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccchhhhhhhhc-----ccccccchhhhHHHHHHhhhc-----cccccccchhhHHHHHHHHHHHHHHH
Q ss_pred HHHhh
Q 015724 396 LYVLC 400 (402)
Q Consensus 396 ~y~li 400 (402)
.....
T Consensus 332 ~~~~~ 336 (417)
T d1pv7a_ 332 GCFKY 336 (417)
T ss_dssp HHHHH
T ss_pred HHHHH
No 8
>d1fftc_ f.25.1.1 (C:) Cytochrome O ubiquinol oxidase, subunit III {Escherichia coli [TaxId: 562]}
Probab=5.29 E-value=3.7e+02 Score=21.06 Aligned_cols=18 Identities=0% Similarity=0.169 Sum_probs=13.9
Q ss_pred CcccccCCCchhHHHHHh
Q 015724 369 AIPINKQLYSFSYVCFTA 386 (402)
Q Consensus 369 ~~PiNK~LWT~SfVL~T~ 386 (402)
.+..+-+.+.+.|-++|+
T Consensus 109 g~~~~~~~~~s~fy~lTG 126 (185)
T d1fftc_ 109 GMGPDRSGFLSAFFALVG 126 (185)
T ss_dssp SCSCCCCSTTTHHHHHHH
T ss_pred ccccccccchhhHHHHHH
Confidence 577788888888877664
No 9
>d1m56c_ f.25.1.1 (C:) Bacterial aa3 type cytochrome c oxidase subunit III {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=5.22 E-value=7.6e+02 Score=20.33 Aligned_cols=18 Identities=17% Similarity=0.311 Sum_probs=14.7
Q ss_pred CcccccCCCchhHHHHHh
Q 015724 369 AIPINKQLYSFSYVCFTA 386 (402)
Q Consensus 369 ~~PiNK~LWT~SfVL~T~ 386 (402)
...++-+.+.++|-+.|+
T Consensus 189 ~~~~~~~~~gs~ff~lTG 206 (265)
T d1m56c_ 189 AFGFAGNIYGANFFMATG 206 (265)
T ss_dssp SSCSSSSHHHHHHHHHHH
T ss_pred CCCcccchhHHHHHHHHH
Confidence 577888999998888775
No 10
>d2r6gg1 f.58.1.1 (G:7-296) Maltose transport system permease protein MalG {Escherichia coli [TaxId: 562]}
Probab=4.90 E-value=3e+02 Score=22.79 Aligned_cols=35 Identities=11% Similarity=-0.086 Sum_probs=24.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Q 015724 317 LLSTISAILSGTIGIHYGHVLIHFKGHSARLKHWV 351 (402)
Q Consensus 317 lLStlpAi~t~llG~~aG~~L~~~~~~~~rl~~~l 351 (402)
+++.+.++.++++|+.++..+.+.+...++....+
T Consensus 84 ~~a~~~~~~~~~ig~~~a~~l~r~~~~~~~~~~~~ 118 (290)
T d2r6gg1 84 KVAGISAIGIVALSTTCAYAFARMRFPGKATLLKG 118 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCTTSHHHHHH
T ss_pred HhhhhhhhhhhhHHHHHHHHHHHhhhhhHHHHHHH
Confidence 45666788889999999999976665555554433
Done!