Query 015726
Match_columns 401
No_of_seqs 567 out of 2454
Neff 11.4
Searched_HMMs 46136
Date Fri Mar 29 09:00:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015726.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015726hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 1E-56 2.2E-61 433.5 44.6 360 37-398 435-796 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 1.7E-55 3.8E-60 424.9 44.9 360 38-399 369-762 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 3.5E-52 7.6E-57 398.8 37.6 347 41-399 89-502 (697)
4 PLN03077 Protein ECB2; Provisi 100.0 7.5E-50 1.6E-54 391.5 37.4 349 38-399 221-665 (857)
5 PLN03081 pentatricopeptide (PP 100.0 2.6E-49 5.6E-54 379.1 35.8 345 37-398 156-535 (697)
6 PLN03077 Protein ECB2; Provisi 100.0 3.7E-49 8.1E-54 386.6 34.0 341 41-399 123-463 (857)
7 TIGR02917 PEP_TPR_lipo putativ 99.9 9E-23 1.9E-27 204.0 42.0 342 42-396 468-809 (899)
8 TIGR02917 PEP_TPR_lipo putativ 99.9 2.4E-22 5.1E-27 201.0 41.9 336 47-396 541-876 (899)
9 PRK11788 tetratricopeptide rep 99.9 6.3E-22 1.4E-26 178.5 35.8 296 82-386 42-347 (389)
10 PRK11788 tetratricopeptide rep 99.9 2E-22 4.4E-27 181.8 32.0 330 48-398 44-381 (389)
11 PRK15174 Vi polysaccharide exp 99.9 3.8E-20 8.2E-25 175.3 40.7 337 41-390 44-385 (656)
12 PRK15174 Vi polysaccharide exp 99.9 5.5E-18 1.2E-22 160.7 37.1 307 76-392 43-353 (656)
13 TIGR00990 3a0801s09 mitochondr 99.9 3E-17 6.4E-22 156.0 41.1 332 44-387 132-572 (615)
14 PRK11447 cellulose synthase su 99.8 1.3E-16 2.8E-21 161.4 41.6 334 47-390 277-704 (1157)
15 PRK10049 pgaA outer membrane p 99.8 2.5E-16 5.4E-21 152.5 40.9 343 42-393 52-463 (765)
16 PRK11447 cellulose synthase su 99.8 3.6E-16 7.9E-21 158.2 41.9 337 41-385 305-739 (1157)
17 PRK10049 pgaA outer membrane p 99.8 6.9E-16 1.5E-20 149.5 41.6 344 40-393 16-429 (765)
18 KOG4626 O-linked N-acetylgluco 99.8 1.8E-17 3.9E-22 145.1 26.3 340 41-396 118-495 (966)
19 TIGR00990 3a0801s09 mitochondr 99.8 1E-15 2.3E-20 145.5 39.4 307 77-391 129-501 (615)
20 KOG4626 O-linked N-acetylgluco 99.8 1E-16 2.2E-21 140.5 25.2 308 73-394 114-459 (966)
21 PRK14574 hmsH outer membrane p 99.8 1.7E-14 3.7E-19 137.8 40.8 340 46-395 41-454 (822)
22 PRK14574 hmsH outer membrane p 99.8 2.3E-14 5.1E-19 136.8 40.1 338 44-390 73-483 (822)
23 PRK09782 bacteriophage N4 rece 99.8 1.1E-13 2.3E-18 135.1 41.1 306 74-391 375-711 (987)
24 PRK09782 bacteriophage N4 rece 99.7 1.9E-13 4E-18 133.4 40.6 334 41-386 378-740 (987)
25 KOG4422 Uncharacterized conser 99.7 2.4E-14 5.3E-19 120.5 29.5 307 72-386 204-551 (625)
26 PRK10747 putative protoheme IX 99.7 5E-14 1.1E-18 126.2 34.1 285 88-386 97-390 (398)
27 TIGR00540 hemY_coli hemY prote 99.7 6E-14 1.3E-18 126.5 32.6 292 86-386 95-399 (409)
28 PF13429 TPR_15: Tetratricopep 99.7 5.4E-17 1.2E-21 139.1 11.1 185 194-383 89-274 (280)
29 PF13429 TPR_15: Tetratricopep 99.7 2.4E-16 5.2E-21 135.1 13.2 259 82-348 15-274 (280)
30 PRK10747 putative protoheme IX 99.7 2.3E-13 5E-18 122.0 32.6 287 52-350 97-389 (398)
31 COG2956 Predicted N-acetylgluc 99.7 8.4E-13 1.8E-17 107.5 30.4 288 87-386 47-347 (389)
32 KOG2076 RNA polymerase III tra 99.7 1.3E-12 2.9E-17 119.8 34.7 337 39-384 140-510 (895)
33 COG2956 Predicted N-acetylgluc 99.7 3.9E-13 8.4E-18 109.4 27.6 293 52-352 48-348 (389)
34 TIGR00540 hemY_coli hemY prote 99.7 8.7E-13 1.9E-17 118.9 32.2 292 49-350 94-398 (409)
35 KOG4422 Uncharacterized conser 99.6 2.3E-12 4.9E-17 108.9 28.9 254 111-369 207-480 (625)
36 COG3071 HemY Uncharacterized e 99.6 1.5E-11 3.2E-16 103.2 32.6 295 80-386 87-390 (400)
37 KOG1126 DNA-binding cell divis 99.6 4E-13 8.8E-18 119.4 23.8 265 112-388 354-622 (638)
38 COG3071 HemY Uncharacterized e 99.6 2.2E-11 4.7E-16 102.3 31.4 292 51-355 96-394 (400)
39 KOG1126 DNA-binding cell divis 99.6 8.3E-13 1.8E-17 117.4 23.8 284 54-352 334-621 (638)
40 KOG2076 RNA polymerase III tra 99.6 2.8E-11 6E-16 111.4 33.2 339 41-385 175-554 (895)
41 KOG0495 HAT repeat protein [RN 99.6 6.7E-11 1.4E-15 105.2 34.4 341 38-396 549-890 (913)
42 KOG0495 HAT repeat protein [RN 99.6 2.4E-10 5.3E-15 101.8 35.9 348 40-397 441-793 (913)
43 KOG1155 Anaphase-promoting com 99.5 2.5E-11 5.5E-16 103.6 27.7 200 182-385 330-535 (559)
44 KOG1155 Anaphase-promoting com 99.5 1.5E-10 3.3E-15 99.0 30.6 259 120-386 236-495 (559)
45 KOG2002 TPR-containing nuclear 99.5 3.4E-11 7.3E-16 111.6 28.1 328 55-392 396-751 (1018)
46 KOG2003 TPR repeat-containing 99.5 1.4E-11 3.1E-16 105.0 23.5 197 195-397 503-700 (840)
47 TIGR02521 type_IV_pilW type IV 99.5 3.3E-11 7.1E-16 100.5 26.0 200 183-386 32-232 (234)
48 KOG1129 TPR repeat-containing 99.5 9.8E-12 2.1E-16 101.5 21.6 238 145-389 222-461 (478)
49 TIGR02521 type_IV_pilW type IV 99.5 3.4E-11 7.4E-16 100.4 25.5 196 114-314 34-230 (234)
50 PRK12370 invasion protein regu 99.5 1.6E-10 3.4E-15 108.4 30.7 250 125-386 275-535 (553)
51 PF12569 NARP1: NMDA receptor- 99.5 6.1E-10 1.3E-14 101.2 31.4 294 81-386 10-334 (517)
52 PRK12370 invasion protein regu 99.5 9.7E-11 2.1E-15 109.8 26.8 217 160-386 275-502 (553)
53 KOG2003 TPR repeat-containing 99.5 1.4E-10 3E-15 99.0 24.9 276 84-372 428-709 (840)
54 KOG2002 TPR-containing nuclear 99.5 8.9E-10 1.9E-14 102.5 31.9 334 54-398 251-605 (1018)
55 KOG1129 TPR repeat-containing 99.4 5.7E-11 1.2E-15 97.1 19.3 233 111-351 223-458 (478)
56 PF13041 PPR_2: PPR repeat fam 99.4 1.2E-12 2.7E-17 79.3 6.6 49 250-298 1-49 (50)
57 PF13041 PPR_2: PPR repeat fam 99.4 1.2E-12 2.6E-17 79.4 6.3 50 285-334 1-50 (50)
58 KOG1915 Cell cycle control pro 99.4 5.1E-08 1.1E-12 84.2 34.4 200 183-387 323-537 (677)
59 PF12569 NARP1: NMDA receptor- 99.4 5E-09 1.1E-13 95.3 30.4 297 42-350 7-333 (517)
60 KOG1174 Anaphase-promoting com 99.4 6.2E-09 1.3E-13 88.1 28.4 301 84-394 205-508 (564)
61 KOG1915 Cell cycle control pro 99.4 1.2E-08 2.5E-13 88.0 30.1 330 50-395 84-475 (677)
62 KOG0547 Translocase of outer m 99.4 5.8E-09 1.3E-13 90.1 28.4 326 48-384 124-564 (606)
63 KOG1173 Anaphase-promoting com 99.4 2.6E-09 5.7E-14 93.8 26.8 274 111-391 244-523 (611)
64 KOG4318 Bicoid mRNA stability 99.3 1.1E-10 2.5E-15 107.1 18.6 247 70-337 20-286 (1088)
65 cd05804 StaR_like StaR_like; a 99.3 5.6E-08 1.2E-12 86.7 34.8 308 74-386 5-336 (355)
66 KOG1840 Kinesin light chain [C 99.3 3E-09 6.4E-14 95.7 24.3 243 143-385 196-478 (508)
67 KOG0547 Translocase of outer m 99.3 2.5E-08 5.4E-13 86.3 27.9 83 78-164 118-201 (606)
68 PRK11189 lipoprotein NlpI; Pro 99.3 4.8E-09 1E-13 90.3 24.1 220 123-352 38-266 (296)
69 PF04733 Coatomer_E: Coatomer 99.3 5E-10 1.1E-14 95.0 17.3 153 226-389 111-268 (290)
70 KOG1174 Anaphase-promoting com 99.3 4.8E-08 1E-12 82.9 28.5 308 32-352 190-501 (564)
71 KOG1840 Kinesin light chain [C 99.3 1.1E-08 2.3E-13 92.2 26.1 243 108-350 196-478 (508)
72 PRK11189 lipoprotein NlpI; Pro 99.3 1.9E-08 4.1E-13 86.6 26.8 218 89-317 40-266 (296)
73 KOG1173 Anaphase-promoting com 99.2 2E-08 4.2E-13 88.5 26.3 285 74-369 243-534 (611)
74 COG3063 PilF Tfp pilus assembl 99.2 1.9E-08 4.2E-13 78.7 23.5 203 185-391 38-241 (250)
75 COG3063 PilF Tfp pilus assembl 99.2 2.7E-08 5.8E-13 77.9 23.7 197 114-315 38-235 (250)
76 KOG4340 Uncharacterized conser 99.1 5E-08 1.1E-12 79.3 20.7 329 40-383 11-372 (459)
77 PF04733 Coatomer_E: Coatomer 99.1 1.2E-08 2.6E-13 86.6 18.3 252 83-351 9-265 (290)
78 cd05804 StaR_like StaR_like; a 99.1 4.2E-07 9.1E-12 81.1 29.2 267 80-351 48-336 (355)
79 KOG4318 Bicoid mRNA stability 99.1 2.1E-08 4.6E-13 92.7 20.5 317 36-385 22-369 (1088)
80 KOG2376 Signal recognition par 99.1 1.2E-06 2.6E-11 77.9 30.4 343 41-396 14-497 (652)
81 KOG1156 N-terminal acetyltrans 99.1 2E-06 4.2E-11 77.4 31.7 131 49-184 51-181 (700)
82 KOG0624 dsRNA-activated protei 99.1 1.7E-06 3.7E-11 72.0 28.1 307 73-391 36-375 (504)
83 KOG2047 mRNA splicing factor [ 99.0 1.5E-06 3.2E-11 78.2 29.1 336 38-387 137-541 (835)
84 KOG4340 Uncharacterized conser 99.0 3.8E-07 8.2E-12 74.3 22.9 292 77-382 12-335 (459)
85 KOG1070 rRNA processing protei 99.0 3E-07 6.6E-12 89.1 25.5 227 112-344 1459-1693(1710)
86 KOG3785 Uncharacterized conser 99.0 2.6E-06 5.6E-11 71.3 27.3 126 264-395 371-498 (557)
87 KOG4162 Predicted calmodulin-b 99.0 1.8E-05 3.8E-10 72.9 34.0 138 255-396 653-794 (799)
88 PRK04841 transcriptional regul 98.9 1.1E-05 2.5E-10 81.3 34.9 310 81-390 415-764 (903)
89 KOG0548 Molecular co-chaperone 98.9 4.4E-06 9.6E-11 73.7 27.2 334 47-391 10-460 (539)
90 KOG1156 N-terminal acetyltrans 98.9 1.6E-05 3.4E-10 71.9 29.8 337 41-390 10-438 (700)
91 KOG3785 Uncharacterized conser 98.9 4E-06 8.6E-11 70.2 23.6 328 46-383 29-454 (557)
92 KOG1070 rRNA processing protei 98.9 3.8E-06 8.2E-11 81.9 26.3 245 129-379 1443-1693(1710)
93 TIGR03302 OM_YfiO outer membra 98.8 9.4E-07 2E-11 73.8 19.9 189 179-388 30-234 (235)
94 KOG1128 Uncharacterized conser 98.8 1.9E-06 4.1E-11 78.6 22.6 221 143-386 395-616 (777)
95 KOG0985 Vesicle coat protein c 98.8 1.5E-05 3.3E-10 75.5 28.9 230 120-384 1057-1306(1666)
96 TIGR03302 OM_YfiO outer membra 98.8 8.9E-07 1.9E-11 73.9 19.4 188 72-281 30-232 (235)
97 KOG1125 TPR repeat-containing 98.8 1.7E-06 3.6E-11 76.9 21.4 252 120-379 294-564 (579)
98 PLN02789 farnesyltranstransfer 98.8 8.6E-06 1.9E-10 70.3 25.5 142 115-261 41-185 (320)
99 KOG4162 Predicted calmodulin-b 98.8 5.5E-05 1.2E-09 69.8 31.1 343 48-397 332-760 (799)
100 KOG2376 Signal recognition par 98.8 4.2E-05 9.2E-10 68.4 29.2 196 78-282 15-254 (652)
101 PLN02789 farnesyltranstransfer 98.8 1.6E-05 3.5E-10 68.6 26.5 207 85-299 47-267 (320)
102 PRK10370 formate-dependent nit 98.8 1.9E-06 4.1E-11 69.2 19.5 120 230-352 52-174 (198)
103 KOG3081 Vesicle coat complex C 98.8 1.5E-05 3.2E-10 64.3 23.7 86 227-316 147-236 (299)
104 KOG1914 mRNA cleavage and poly 98.8 8.9E-05 1.9E-09 65.8 31.6 156 233-390 347-505 (656)
105 KOG3081 Vesicle coat complex C 98.8 1.1E-05 2.5E-10 64.9 23.0 255 118-390 15-275 (299)
106 PF12854 PPR_1: PPR repeat 98.8 7.8E-09 1.7E-13 56.2 3.7 31 283-313 3-33 (34)
107 KOG2047 mRNA splicing factor [ 98.8 4.1E-05 8.8E-10 69.3 28.4 327 47-386 110-506 (835)
108 PRK04841 transcriptional regul 98.8 6.2E-05 1.3E-09 76.1 33.5 340 42-386 344-720 (903)
109 KOG1128 Uncharacterized conser 98.8 1.7E-06 3.7E-11 78.9 19.2 239 70-331 393-632 (777)
110 PF12854 PPR_1: PPR repeat 98.7 1.4E-08 3.1E-13 55.2 3.7 32 177-208 2-33 (34)
111 KOG3616 Selective LIM binding 98.7 5.8E-06 1.3E-10 75.7 21.8 263 78-383 592-876 (1636)
112 PRK15359 type III secretion sy 98.7 8E-07 1.7E-11 67.5 14.3 101 292-394 29-129 (144)
113 KOG0624 dsRNA-activated protei 98.7 0.0001 2.2E-09 61.8 30.7 300 41-352 40-371 (504)
114 KOG3617 WD40 and TPR repeat-co 98.7 1.8E-06 3.9E-11 79.8 18.5 233 47-314 736-994 (1416)
115 KOG1125 TPR repeat-containing 98.7 4E-06 8.8E-11 74.6 20.1 255 83-345 293-565 (579)
116 PRK14720 transcript cleavage f 98.7 1.3E-05 2.7E-10 77.3 24.4 151 72-246 28-178 (906)
117 COG5010 TadD Flp pilus assembl 98.7 7.6E-06 1.6E-10 65.8 18.9 156 79-240 70-225 (257)
118 KOG0548 Molecular co-chaperone 98.7 2.7E-05 5.9E-10 68.9 23.1 303 82-394 9-429 (539)
119 PRK10370 formate-dependent nit 98.6 1.4E-05 2.9E-10 64.3 19.9 119 195-316 52-173 (198)
120 KOG3616 Selective LIM binding 98.6 1.1E-05 2.3E-10 74.0 20.3 188 157-379 743-930 (1636)
121 COG4783 Putative Zn-dependent 98.6 0.00023 5E-09 62.6 27.4 147 227-395 316-463 (484)
122 PRK14720 transcript cleavage f 98.6 3E-05 6.5E-10 74.8 24.3 222 37-298 29-268 (906)
123 COG5010 TadD Flp pilus assembl 98.6 2.6E-05 5.7E-10 62.8 19.7 28 216-243 133-160 (257)
124 KOG0985 Vesicle coat protein c 98.6 0.00017 3.6E-09 68.8 27.3 258 74-378 983-1241(1666)
125 KOG3060 Uncharacterized conser 98.6 4.6E-05 1E-09 61.0 20.4 190 158-352 24-221 (289)
126 COG4783 Putative Zn-dependent 98.6 3.5E-05 7.6E-10 67.6 20.9 116 123-243 318-434 (484)
127 PRK15179 Vi polysaccharide bio 98.6 3E-05 6.5E-10 73.9 22.5 147 213-363 82-228 (694)
128 PRK15179 Vi polysaccharide bio 98.6 1.8E-05 3.8E-10 75.4 20.8 177 39-223 49-228 (694)
129 KOG2053 Mitochondrial inherita 98.5 0.00071 1.5E-08 63.9 30.1 228 41-283 12-257 (932)
130 KOG3060 Uncharacterized conser 98.5 0.00022 4.8E-09 57.3 21.8 163 114-281 55-220 (289)
131 TIGR02552 LcrH_SycD type III s 98.5 7.4E-06 1.6E-10 61.7 13.2 98 291-390 21-118 (135)
132 PF09976 TPR_21: Tetratricopep 98.4 2.2E-05 4.8E-10 59.8 15.1 128 76-207 13-143 (145)
133 KOG1127 TPR repeat-containing 98.4 0.00011 2.3E-09 69.9 21.0 88 304-394 800-887 (1238)
134 KOG1127 TPR repeat-containing 98.4 0.00018 3.8E-09 68.5 22.3 183 91-280 474-658 (1238)
135 PRK15359 type III secretion sy 98.4 2.6E-05 5.7E-10 59.2 14.4 90 118-210 31-120 (144)
136 KOG1914 mRNA cleavage and poly 98.4 0.0014 3.1E-08 58.5 26.0 136 71-211 16-166 (656)
137 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 2.6E-05 5.7E-10 68.8 15.3 122 257-384 174-295 (395)
138 TIGR02552 LcrH_SycD type III s 98.3 3.5E-05 7.5E-10 58.1 14.1 92 116-210 22-113 (135)
139 KOG3617 WD40 and TPR repeat-co 98.3 0.00015 3.3E-09 67.6 20.1 240 74-349 725-994 (1416)
140 TIGR02795 tol_pal_ybgF tol-pal 98.3 3.6E-05 7.9E-10 56.4 12.4 106 289-396 4-115 (119)
141 TIGR00756 PPR pentatricopeptid 98.3 2.2E-06 4.8E-11 47.2 4.4 32 255-286 3-34 (35)
142 TIGR00756 PPR pentatricopeptid 98.2 2.1E-06 4.5E-11 47.3 4.2 33 289-321 2-34 (35)
143 PF09976 TPR_21: Tetratricopep 98.2 8.4E-05 1.8E-09 56.6 14.3 126 255-383 15-144 (145)
144 PF13812 PPR_3: Pentatricopept 98.2 2.8E-06 6E-11 46.5 4.4 31 254-284 3-33 (34)
145 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 5.9E-05 1.3E-09 66.6 14.8 124 113-243 171-294 (395)
146 KOG2053 Mitochondrial inherita 98.2 0.0013 2.9E-08 62.1 24.0 224 121-352 19-256 (932)
147 PF10037 MRP-S27: Mitochondria 98.2 5.1E-05 1.1E-09 67.3 13.8 133 168-300 50-186 (429)
148 PF13812 PPR_3: Pentatricopept 98.2 3.3E-06 7.1E-11 46.2 4.1 33 288-320 2-34 (34)
149 PF10037 MRP-S27: Mitochondria 98.1 4.4E-05 9.6E-10 67.7 12.3 124 212-335 61-186 (429)
150 PF08579 RPM2: Mitochondrial r 98.1 4.7E-05 1E-09 53.0 9.5 74 260-333 33-115 (120)
151 cd00189 TPR Tetratricopeptide 98.1 7.1E-05 1.5E-09 52.0 10.8 93 292-386 5-97 (100)
152 PF08579 RPM2: Mitochondrial r 98.1 5.8E-05 1.2E-09 52.6 9.4 75 224-298 32-115 (120)
153 TIGR02795 tol_pal_ybgF tol-pal 98.1 0.00022 4.9E-09 52.1 13.1 95 79-173 6-103 (119)
154 PF05843 Suf: Suppressor of fo 98.0 0.0002 4.4E-09 61.1 13.0 129 219-350 3-135 (280)
155 cd00189 TPR Tetratricopeptide 98.0 0.00018 3.8E-09 49.9 10.6 91 116-209 5-95 (100)
156 PF14938 SNAP: Soluble NSF att 98.0 0.0017 3.7E-08 55.6 18.4 26 77-102 37-62 (282)
157 PF01535 PPR: PPR repeat; Int 97.9 1.1E-05 2.5E-10 42.9 3.1 25 290-314 3-27 (31)
158 PF01535 PPR: PPR repeat; Int 97.9 1.8E-05 3.9E-10 42.1 3.6 29 254-282 2-30 (31)
159 PLN03088 SGT1, suppressor of 97.9 0.00026 5.7E-09 62.7 12.9 103 258-364 8-110 (356)
160 PRK10866 outer membrane biogen 97.9 0.0037 8E-08 52.0 18.8 180 80-279 37-239 (243)
161 PF06239 ECSIT: Evolutionarily 97.9 0.0004 8.7E-09 54.8 11.8 86 216-301 46-152 (228)
162 PRK02603 photosystem I assembl 97.9 0.00098 2.1E-08 52.5 14.3 92 74-166 34-126 (172)
163 PF12895 Apc3: Anaphase-promot 97.9 3.3E-05 7.2E-10 52.6 5.0 81 124-207 2-83 (84)
164 KOG0553 TPR repeat-containing 97.9 0.00013 2.8E-09 60.2 9.1 94 263-361 92-186 (304)
165 PRK10866 outer membrane biogen 97.8 0.0095 2.1E-07 49.6 20.3 58 327-384 180-239 (243)
166 PF12895 Apc3: Anaphase-promot 97.8 8.4E-05 1.8E-09 50.6 6.8 80 89-170 3-82 (84)
167 PF13432 TPR_16: Tetratricopep 97.8 0.0001 2.2E-09 47.3 6.7 62 328-390 3-64 (65)
168 PF05843 Suf: Suppressor of fo 97.8 0.00052 1.1E-08 58.6 12.7 133 76-211 2-136 (280)
169 COG3898 Uncharacterized membra 97.8 0.018 3.9E-07 49.7 27.0 309 54-386 68-392 (531)
170 PRK02603 photosystem I assembl 97.8 0.0018 4E-08 50.9 14.9 94 109-204 33-128 (172)
171 PF04840 Vps16_C: Vps16, C-ter 97.8 0.019 4.2E-07 49.7 23.0 106 254-379 179-284 (319)
172 PRK15363 pathogenicity island 97.8 0.0018 3.8E-08 48.8 13.2 101 74-177 34-134 (157)
173 PLN03088 SGT1, suppressor of 97.8 0.0011 2.4E-08 58.8 14.2 91 82-175 9-99 (356)
174 CHL00033 ycf3 photosystem I as 97.7 0.001 2.3E-08 52.1 12.7 64 111-174 35-100 (168)
175 PF14559 TPR_19: Tetratricopep 97.7 0.00026 5.6E-09 45.8 7.8 62 123-188 3-64 (68)
176 PRK15363 pathogenicity island 97.7 0.0013 2.9E-08 49.5 12.1 95 255-351 38-132 (157)
177 PF04840 Vps16_C: Vps16, C-ter 97.7 0.026 5.6E-07 49.0 24.6 126 217-368 177-302 (319)
178 COG4700 Uncharacterized protei 97.7 0.0066 1.4E-07 46.7 15.5 161 42-209 59-220 (251)
179 PF14938 SNAP: Soluble NSF att 97.7 0.0025 5.4E-08 54.6 15.5 32 34-65 30-61 (282)
180 PF06239 ECSIT: Evolutionarily 97.7 0.0012 2.6E-08 52.2 12.0 104 143-266 44-152 (228)
181 PRK10803 tol-pal system protei 97.7 0.0011 2.4E-08 55.6 12.3 100 290-391 146-251 (263)
182 PF14559 TPR_19: Tetratricopep 97.7 7E-05 1.5E-09 48.6 4.0 56 334-390 3-58 (68)
183 CHL00033 ycf3 photosystem I as 97.6 0.0029 6.3E-08 49.6 13.7 97 74-171 34-138 (168)
184 PF13414 TPR_11: TPR repeat; P 97.6 0.00029 6.2E-09 45.8 6.8 66 322-388 3-69 (69)
185 KOG2041 WD40 repeat protein [G 97.6 0.036 7.9E-07 51.5 21.7 231 42-313 667-904 (1189)
186 KOG2041 WD40 repeat protein [G 97.6 0.056 1.2E-06 50.3 22.2 51 147-207 853-903 (1189)
187 PRK10803 tol-pal system protei 97.6 0.0021 4.5E-08 54.0 12.6 101 75-175 143-246 (263)
188 COG4235 Cytochrome c biogenesi 97.6 0.0059 1.3E-07 50.9 14.8 104 286-391 155-261 (287)
189 PRK10153 DNA-binding transcrip 97.5 0.01 2.2E-07 55.2 17.5 140 248-391 333-487 (517)
190 COG4700 Uncharacterized protei 97.5 0.026 5.7E-07 43.5 17.7 125 249-377 86-213 (251)
191 PF13525 YfiO: Outer membrane 97.5 0.03 6.6E-07 45.3 18.2 59 82-140 12-71 (203)
192 PF12688 TPR_5: Tetratrico pep 97.5 0.011 2.5E-07 42.8 13.8 90 117-209 7-102 (120)
193 PF13525 YfiO: Outer membrane 97.5 0.024 5.2E-07 45.9 17.3 22 294-315 148-169 (203)
194 PF13432 TPR_16: Tetratricopep 97.5 0.00073 1.6E-08 43.2 6.8 54 119-173 5-58 (65)
195 KOG0553 TPR repeat-containing 97.4 0.0026 5.5E-08 52.8 11.0 95 85-185 91-185 (304)
196 KOG0550 Molecular chaperone (D 97.4 0.022 4.8E-07 49.5 16.5 88 298-386 260-350 (486)
197 PRK10153 DNA-binding transcrip 97.4 0.018 3.9E-07 53.6 17.4 143 213-360 333-489 (517)
198 KOG2796 Uncharacterized conser 97.4 0.022 4.7E-07 46.5 15.0 155 82-246 156-315 (366)
199 KOG2796 Uncharacterized conser 97.3 0.07 1.5E-06 43.7 18.4 131 149-281 180-315 (366)
200 PF12688 TPR_5: Tetratrico pep 97.3 0.024 5.1E-07 41.2 13.4 54 192-245 11-66 (120)
201 COG5107 RNA14 Pre-mRNA 3'-end 97.3 0.12 2.7E-06 45.7 27.9 134 253-390 398-535 (660)
202 PF12921 ATP13: Mitochondrial 97.3 0.0061 1.3E-07 44.7 10.2 55 141-195 47-101 (126)
203 PF03704 BTAD: Bacterial trans 97.2 0.014 3E-07 44.5 12.7 58 149-208 65-122 (146)
204 PF13371 TPR_9: Tetratricopept 97.2 0.0017 3.7E-08 42.6 6.7 59 331-390 4-62 (73)
205 KOG1130 Predicted G-alpha GTPa 97.2 0.0048 1E-07 53.4 10.7 133 218-350 196-343 (639)
206 PF13281 DUF4071: Domain of un 97.2 0.12 2.6E-06 45.5 19.0 94 187-280 146-254 (374)
207 PF13414 TPR_11: TPR repeat; P 97.2 0.0024 5.2E-08 41.4 6.7 59 113-172 5-64 (69)
208 PF09205 DUF1955: Domain of un 97.0 0.069 1.5E-06 38.7 14.1 65 288-353 87-151 (161)
209 PF12921 ATP13: Mitochondrial 97.0 0.0047 1E-07 45.3 7.8 85 286-370 1-101 (126)
210 COG4235 Cytochrome c biogenesi 97.0 0.025 5.4E-07 47.3 12.4 101 108-211 153-256 (287)
211 PF13371 TPR_9: Tetratricopept 97.0 0.0063 1.4E-07 39.9 7.5 54 120-174 4-57 (73)
212 PF13428 TPR_14: Tetratricopep 97.0 0.0015 3.2E-08 37.9 3.8 40 358-397 2-41 (44)
213 PF03704 BTAD: Bacterial trans 96.9 0.011 2.4E-07 45.0 9.6 57 291-348 66-122 (146)
214 COG1729 Uncharacterized protei 96.9 0.036 7.7E-07 45.8 12.7 101 289-390 144-248 (262)
215 COG3898 Uncharacterized membra 96.9 0.24 5.2E-06 43.1 31.6 289 52-355 97-396 (531)
216 PF13281 DUF4071: Domain of un 96.9 0.27 5.9E-06 43.3 20.7 29 253-281 306-334 (374)
217 KOG1538 Uncharacterized conser 96.9 0.4 8.6E-06 44.6 20.6 201 132-351 621-846 (1081)
218 KOG1130 Predicted G-alpha GTPa 96.8 0.034 7.3E-07 48.5 11.9 134 253-386 196-344 (639)
219 PF13424 TPR_12: Tetratricopep 96.8 0.0068 1.5E-07 40.3 6.4 61 77-137 7-72 (78)
220 PF04053 Coatomer_WDAD: Coatom 96.7 0.077 1.7E-06 48.3 14.6 160 82-277 268-427 (443)
221 PF13424 TPR_12: Tetratricopep 96.7 0.0049 1.1E-07 41.0 5.4 62 324-385 7-74 (78)
222 PF10300 DUF3808: Protein of u 96.7 0.2 4.3E-06 46.3 17.1 178 202-386 177-376 (468)
223 KOG2280 Vacuolar assembly/sort 96.6 0.65 1.4E-05 44.0 24.2 315 42-380 440-793 (829)
224 KOG2114 Vacuolar assembly/sort 96.6 0.23 5.1E-06 47.4 16.9 179 114-314 337-517 (933)
225 PRK15331 chaperone protein Sic 96.6 0.12 2.5E-06 39.5 12.3 89 261-351 46-134 (165)
226 PRK15331 chaperone protein Sic 96.6 0.22 4.8E-06 38.0 14.1 117 197-315 8-133 (165)
227 PF09205 DUF1955: Domain of un 96.6 0.17 3.6E-06 36.8 12.3 140 122-284 13-152 (161)
228 PF13512 TPR_18: Tetratricopep 96.5 0.085 1.9E-06 39.2 11.0 114 261-392 19-134 (142)
229 PF04053 Coatomer_WDAD: Coatom 96.5 0.15 3.3E-06 46.5 14.7 157 119-312 269-427 (443)
230 COG5107 RNA14 Pre-mRNA 3'-end 96.4 0.62 1.3E-05 41.5 17.9 145 217-367 397-545 (660)
231 smart00299 CLH Clathrin heavy 96.4 0.26 5.6E-06 37.1 15.0 124 222-368 12-136 (140)
232 PF13512 TPR_18: Tetratricopep 96.4 0.096 2.1E-06 38.9 10.8 84 75-159 11-95 (142)
233 COG1729 Uncharacterized protei 96.4 0.14 3.1E-06 42.4 12.8 100 76-176 143-245 (262)
234 COG4105 ComL DNA uptake lipopr 96.4 0.44 9.5E-06 39.2 21.0 179 193-390 45-237 (254)
235 COG4105 ComL DNA uptake lipopr 96.4 0.44 9.5E-06 39.2 20.3 82 75-157 35-117 (254)
236 PF10300 DUF3808: Protein of u 96.4 0.34 7.3E-06 44.9 16.5 23 259-281 312-334 (468)
237 PF08631 SPO22: Meiosis protei 96.3 0.59 1.3E-05 40.0 25.3 163 219-384 86-273 (278)
238 PF07079 DUF1347: Protein of u 96.3 0.79 1.7E-05 40.9 28.4 142 48-194 15-179 (549)
239 KOG3941 Intermediate in Toll s 96.3 0.043 9.4E-07 45.3 8.9 61 166-229 54-119 (406)
240 PLN03098 LPA1 LOW PSII ACCUMUL 96.2 0.22 4.8E-06 44.6 13.7 67 107-175 71-141 (453)
241 KOG1585 Protein required for f 96.2 0.54 1.2E-05 38.3 17.2 213 69-310 25-250 (308)
242 KOG3941 Intermediate in Toll s 96.0 0.078 1.7E-06 43.9 9.4 100 143-243 64-185 (406)
243 KOG2280 Vacuolar assembly/sort 96.0 1.5 3.2E-05 41.8 23.3 302 70-384 427-771 (829)
244 PF07079 DUF1347: Protein of u 96.0 1.1 2.4E-05 40.0 24.1 283 85-390 16-331 (549)
245 COG4649 Uncharacterized protei 96.0 0.52 1.1E-05 36.2 15.6 51 123-173 144-194 (221)
246 KOG0550 Molecular chaperone (D 95.9 1.1 2.3E-05 39.6 21.7 251 54-317 64-351 (486)
247 KOG2066 Vacuolar assembly/sort 95.9 1.7 3.7E-05 41.6 22.0 154 82-244 363-532 (846)
248 KOG4555 TPR repeat-containing 95.8 0.29 6.2E-06 35.6 10.4 54 84-139 52-105 (175)
249 KOG1941 Acetylcholine receptor 95.8 1.1 2.4E-05 38.8 16.3 166 149-314 86-273 (518)
250 KOG0543 FKBP-type peptidyl-pro 95.8 0.23 5E-06 43.5 11.7 125 154-280 216-354 (397)
251 PLN03098 LPA1 LOW PSII ACCUMUL 95.7 0.21 4.6E-06 44.7 11.7 71 70-140 70-141 (453)
252 KOG2610 Uncharacterized conser 95.7 1.2 2.5E-05 38.3 15.3 116 124-243 116-235 (491)
253 PF08631 SPO22: Meiosis protei 95.7 1.2 2.6E-05 38.2 24.6 164 184-349 86-273 (278)
254 KOG0543 FKBP-type peptidyl-pro 95.7 0.3 6.6E-06 42.8 12.0 96 288-386 258-355 (397)
255 KOG1920 IkappaB kinase complex 95.7 2.8 6.1E-05 42.3 21.3 52 294-348 972-1025(1265)
256 KOG2610 Uncharacterized conser 95.6 0.49 1.1E-05 40.4 12.6 155 193-350 114-275 (491)
257 COG3118 Thioredoxin domain-con 95.6 0.83 1.8E-05 38.4 13.8 151 82-237 141-292 (304)
258 smart00299 CLH Clathrin heavy 95.6 0.7 1.5E-05 34.7 14.9 85 79-172 11-95 (140)
259 PF02284 COX5A: Cytochrome c o 95.5 0.11 2.4E-06 35.6 7.0 57 340-396 28-84 (108)
260 cd00923 Cyt_c_Oxidase_Va Cytoc 95.4 0.097 2.1E-06 35.6 6.4 45 305-349 25-69 (103)
261 KOG1538 Uncharacterized conser 95.4 0.63 1.4E-05 43.4 13.4 184 35-246 641-846 (1081)
262 COG0457 NrfG FOG: TPR repeat [ 95.2 1.3 2.9E-05 36.0 29.0 225 124-351 36-265 (291)
263 COG3118 Thioredoxin domain-con 95.2 1.7 3.6E-05 36.7 16.5 144 120-267 143-287 (304)
264 PF07163 Pex26: Pex26 protein; 95.0 0.86 1.9E-05 38.0 12.0 132 37-169 33-181 (309)
265 PF02259 FAT: FAT domain; Int 95.0 2.4 5.3E-05 37.6 20.9 53 118-174 5-57 (352)
266 KOG4555 TPR repeat-containing 95.0 0.95 2.1E-05 33.0 10.7 56 120-176 52-107 (175)
267 KOG1941 Acetylcholine receptor 95.0 0.92 2E-05 39.3 12.4 232 48-279 15-273 (518)
268 KOG1550 Extracellular protein 95.0 2.1 4.6E-05 40.7 16.5 178 198-385 228-425 (552)
269 KOG4570 Uncharacterized conser 94.9 0.17 3.7E-06 42.6 8.0 106 70-176 59-165 (418)
270 PF13428 TPR_14: Tetratricopep 94.9 0.1 2.3E-06 30.0 5.0 27 114-140 4-30 (44)
271 PRK11906 transcriptional regul 94.9 1.4 3E-05 39.8 14.0 117 54-173 273-399 (458)
272 KOG1920 IkappaB kinase complex 94.8 5 0.00011 40.6 18.5 115 214-348 932-1052(1265)
273 PF13170 DUF4003: Protein of u 94.8 2.4 5.1E-05 36.6 21.7 133 198-332 78-227 (297)
274 PF07719 TPR_2: Tetratricopept 94.5 0.13 2.8E-06 27.4 4.5 33 358-390 2-34 (34)
275 KOG1585 Protein required for f 94.5 2.2 4.8E-05 34.9 17.1 93 105-208 25-117 (308)
276 COG3629 DnrI DNA-binding trans 94.5 0.53 1.1E-05 39.7 9.9 80 146-227 153-237 (280)
277 COG3629 DnrI DNA-binding trans 94.5 0.63 1.4E-05 39.3 10.3 78 252-330 153-235 (280)
278 PF04184 ST7: ST7 protein; In 94.4 3.9 8.4E-05 37.3 17.1 60 291-350 263-323 (539)
279 PF09613 HrpB1_HrpK: Bacterial 94.3 1.8 4E-05 33.0 13.6 49 123-173 22-71 (160)
280 KOG4570 Uncharacterized conser 94.2 0.94 2E-05 38.4 10.6 100 215-316 62-164 (418)
281 PF13174 TPR_6: Tetratricopept 94.1 0.099 2.1E-06 27.6 3.5 31 360-390 3-33 (33)
282 PF10602 RPN7: 26S proteasome 94.0 1.6 3.4E-05 34.4 11.2 62 77-138 38-100 (177)
283 PF04184 ST7: ST7 protein; In 93.9 2.3 4.9E-05 38.8 13.0 156 227-397 178-337 (539)
284 PF10602 RPN7: 26S proteasome 93.9 2.2 4.9E-05 33.5 11.9 98 111-208 36-139 (177)
285 COG4649 Uncharacterized protei 93.8 2.5 5.3E-05 32.7 14.3 124 122-246 69-196 (221)
286 KOG2114 Vacuolar assembly/sort 93.6 7.7 0.00017 37.8 23.6 123 41-173 336-458 (933)
287 PF00515 TPR_1: Tetratricopept 93.5 0.19 4.2E-06 26.8 3.9 30 359-388 3-32 (34)
288 PF13176 TPR_7: Tetratricopept 93.1 0.23 5.1E-06 27.0 3.9 26 359-384 1-26 (36)
289 PF13170 DUF4003: Protein of u 93.1 5.3 0.00011 34.5 19.6 130 127-258 78-223 (297)
290 PF13929 mRNA_stabil: mRNA sta 92.8 5.5 0.00012 33.7 13.9 148 78-228 134-289 (292)
291 TIGR02561 HrpB1_HrpK type III 92.7 3.3 7.2E-05 31.1 12.4 49 123-173 22-71 (153)
292 PF07035 Mic1: Colon cancer-as 92.6 3.9 8.4E-05 31.7 16.1 134 132-280 15-148 (167)
293 KOG1258 mRNA processing protei 92.5 9.2 0.0002 35.8 25.5 326 41-377 47-420 (577)
294 PF13176 TPR_7: Tetratricopept 92.3 0.38 8.2E-06 26.2 4.0 26 324-349 1-26 (36)
295 PF07035 Mic1: Colon cancer-as 92.3 4.3 9.4E-05 31.4 15.3 23 210-232 22-44 (167)
296 PRK11906 transcriptional regul 92.1 9.1 0.0002 34.8 15.7 162 76-242 252-432 (458)
297 PF11207 DUF2989: Protein of u 92.1 3 6.6E-05 33.2 10.1 74 303-377 122-198 (203)
298 COG1747 Uncharacterized N-term 92.0 9.8 0.00021 35.0 20.9 180 107-295 62-247 (711)
299 KOG4234 TPR repeat-containing 91.8 1.4 3.1E-05 34.8 7.8 87 262-351 105-197 (271)
300 PF09613 HrpB1_HrpK: Bacterial 91.8 4.7 0.0001 30.8 12.4 71 83-158 18-89 (160)
301 PF13431 TPR_17: Tetratricopep 91.7 0.24 5.3E-06 26.6 2.7 30 347-377 4-33 (34)
302 KOG1550 Extracellular protein 91.4 14 0.0003 35.4 24.6 82 87-173 261-355 (552)
303 COG0457 NrfG FOG: TPR repeat [ 91.4 6.6 0.00014 31.7 28.5 224 89-316 37-265 (291)
304 COG1747 Uncharacterized N-term 91.3 12 0.00026 34.5 20.8 181 179-367 63-249 (711)
305 PF10345 Cohesin_load: Cohesin 91.3 15 0.00032 35.7 30.1 184 58-243 40-251 (608)
306 KOG1258 mRNA processing protei 91.2 13 0.00028 34.8 25.7 311 74-388 44-397 (577)
307 PF13431 TPR_17: Tetratricopep 91.1 0.32 7E-06 26.1 2.8 22 144-165 11-32 (34)
308 KOG0276 Vesicle coat complex C 91.0 6 0.00013 37.0 12.0 46 86-138 648-693 (794)
309 PRK15180 Vi polysaccharide bio 91.0 2.7 5.9E-05 38.0 9.7 133 262-398 299-432 (831)
310 PF13181 TPR_8: Tetratricopept 89.9 0.73 1.6E-05 24.4 3.7 30 359-388 3-32 (34)
311 KOG4077 Cytochrome c oxidase, 89.8 0.75 1.6E-05 33.1 4.3 47 305-351 67-113 (149)
312 cd00923 Cyt_c_Oxidase_Va Cytoc 89.6 3.4 7.4E-05 28.4 7.1 45 200-244 25-69 (103)
313 PF11207 DUF2989: Protein of u 89.2 5 0.00011 32.0 8.9 73 269-342 123-198 (203)
314 PF02259 FAT: FAT domain; Int 89.0 16 0.00034 32.4 22.1 65 216-280 145-212 (352)
315 PF13374 TPR_10: Tetratricopep 88.8 1.2 2.5E-05 24.8 4.2 29 358-386 3-31 (42)
316 PF02284 COX5A: Cytochrome c o 88.6 6.4 0.00014 27.4 9.5 48 129-176 28-75 (108)
317 PRK15180 Vi polysaccharide bio 88.5 17 0.00036 33.3 12.5 90 191-282 332-421 (831)
318 KOG4648 Uncharacterized conser 88.2 1.6 3.5E-05 37.5 6.0 88 260-350 105-193 (536)
319 COG4785 NlpI Lipoprotein NlpI, 88.0 13 0.00028 30.2 14.9 63 112-175 100-162 (297)
320 PF00637 Clathrin: Region in C 88.0 0.23 4.9E-06 37.6 1.0 85 258-349 13-97 (143)
321 KOG0890 Protein kinase of the 87.8 51 0.0011 36.8 25.8 313 47-387 1391-1732(2382)
322 KOG4521 Nuclear pore complex, 87.4 22 0.00048 36.3 13.7 145 25-172 969-1128(1480)
323 COG2909 MalT ATP-dependent tra 87.2 33 0.00072 34.0 24.7 301 39-347 347-684 (894)
324 PF00637 Clathrin: Region in C 87.0 0.37 8.1E-06 36.4 1.6 83 188-277 13-95 (143)
325 PF00515 TPR_1: Tetratricopept 86.8 2.1 4.6E-05 22.5 4.2 18 119-136 9-26 (34)
326 PF13374 TPR_10: Tetratricopep 86.5 2 4.4E-05 23.8 4.3 28 323-350 3-30 (42)
327 COG2976 Uncharacterized protei 86.3 15 0.00033 29.2 14.6 54 191-246 135-188 (207)
328 PF13929 mRNA_stabil: mRNA sta 86.1 20 0.00044 30.5 19.0 117 266-382 142-263 (292)
329 COG3947 Response regulator con 86.1 20 0.00044 30.5 15.8 62 324-386 281-342 (361)
330 PF07719 TPR_2: Tetratricopept 86.0 2.4 5.3E-05 22.2 4.2 17 120-136 10-26 (34)
331 PF10345 Cohesin_load: Cohesin 86.0 35 0.00076 33.2 29.0 196 74-279 29-252 (608)
332 COG2976 Uncharacterized protei 85.9 16 0.00034 29.1 13.6 88 295-387 97-189 (207)
333 smart00386 HAT HAT (Half-A-TPR 85.5 0.78 1.7E-05 23.8 2.0 28 371-398 1-28 (33)
334 KOG0276 Vesicle coat complex C 84.8 15 0.00032 34.6 10.5 97 229-346 649-745 (794)
335 COG4455 ImpE Protein of avirul 84.6 11 0.00024 30.5 8.6 77 184-261 3-81 (273)
336 PF07721 TPR_4: Tetratricopept 84.5 1.6 3.4E-05 21.6 2.7 21 361-381 5-25 (26)
337 KOG1464 COP9 signalosome, subu 84.2 24 0.00052 29.7 23.2 27 285-312 302-328 (440)
338 PF11846 DUF3366: Domain of un 84.2 6.6 0.00014 31.4 7.6 35 354-388 141-175 (193)
339 PF07163 Pex26: Pex26 protein; 84.1 19 0.00041 30.5 9.9 88 151-240 88-181 (309)
340 KOG4507 Uncharacterized conser 83.9 2.8 6.1E-05 38.9 5.7 99 298-397 618-716 (886)
341 PRK09687 putative lyase; Provi 83.4 28 0.00061 29.9 27.0 221 144-388 35-265 (280)
342 PF13181 TPR_8: Tetratricopept 83.4 3.8 8.3E-05 21.4 4.2 28 324-351 3-30 (34)
343 KOG0686 COP9 signalosome, subu 83.3 33 0.00072 30.7 18.6 163 111-281 150-333 (466)
344 smart00028 TPR Tetratricopepti 83.1 2.5 5.4E-05 21.1 3.5 27 360-386 4-30 (34)
345 PF10579 Rapsyn_N: Rapsyn N-te 83.0 3.6 7.8E-05 27.0 4.4 46 87-132 18-64 (80)
346 TIGR03504 FimV_Cterm FimV C-te 82.9 3.2 7E-05 23.8 3.8 23 188-210 5-27 (44)
347 PF13174 TPR_6: Tetratricopept 82.9 2.3 5E-05 22.0 3.2 20 155-174 9-28 (33)
348 COG4785 NlpI Lipoprotein NlpI, 82.5 25 0.00054 28.6 15.0 31 322-352 237-267 (297)
349 PRK09687 putative lyase; Provi 82.1 32 0.00069 29.5 28.6 136 216-367 141-277 (280)
350 PRK11619 lytic murein transgly 82.0 54 0.0012 32.1 32.6 326 38-385 33-374 (644)
351 PF06552 TOM20_plant: Plant sp 81.9 13 0.00027 29.2 7.7 75 128-212 52-137 (186)
352 KOG1586 Protein required for f 81.9 28 0.0006 28.7 17.4 29 294-322 161-189 (288)
353 PF14853 Fis1_TPR_C: Fis1 C-te 81.8 4.3 9.3E-05 24.4 4.2 28 363-390 7-34 (53)
354 COG4455 ImpE Protein of avirul 81.4 15 0.00033 29.8 8.2 77 254-331 3-81 (273)
355 TIGR02508 type_III_yscG type I 81.3 16 0.00034 25.5 7.6 52 260-317 47-98 (115)
356 KOG4234 TPR repeat-containing 81.3 25 0.00054 28.2 9.2 21 261-281 177-197 (271)
357 COG5159 RPN6 26S proteasome re 81.2 33 0.00072 29.2 10.7 25 361-385 129-153 (421)
358 PF13762 MNE1: Mitochondrial s 81.1 21 0.00046 26.9 10.2 45 253-297 80-125 (145)
359 KOG0687 26S proteasome regulat 81.0 36 0.00079 29.5 14.0 97 253-351 105-210 (393)
360 TIGR03504 FimV_Cterm FimV C-te 80.9 5 0.00011 23.0 4.1 22 259-280 6-27 (44)
361 TIGR02561 HrpB1_HrpK type III 79.9 24 0.00052 26.7 10.9 50 88-140 23-73 (153)
362 KOG2063 Vacuolar assembly/sort 79.8 72 0.0016 32.2 17.9 26 149-174 507-532 (877)
363 KOG2297 Predicted translation 79.2 40 0.00087 29.0 13.1 21 217-237 321-341 (412)
364 PF11838 ERAP1_C: ERAP1-like C 78.7 45 0.00097 29.2 19.6 131 233-369 146-287 (324)
365 PRK10941 hypothetical protein; 78.6 38 0.00082 28.8 10.4 78 149-228 184-262 (269)
366 COG4259 Uncharacterized protei 77.7 9.5 0.00021 26.3 5.2 56 340-395 55-110 (121)
367 PF04910 Tcf25: Transcriptiona 77.5 53 0.0012 29.4 16.9 57 294-350 110-167 (360)
368 TIGR02508 type_III_yscG type I 77.1 22 0.00048 24.8 9.4 87 126-221 20-106 (115)
369 KOG3364 Membrane protein invol 76.9 28 0.0006 25.9 8.8 71 320-390 30-104 (149)
370 PF10579 Rapsyn_N: Rapsyn N-te 76.7 7.6 0.00016 25.6 4.4 45 123-167 18-64 (80)
371 KOG4077 Cytochrome c oxidase, 76.7 19 0.00042 26.2 6.7 47 200-246 67-113 (149)
372 COG2909 MalT ATP-dependent tra 76.4 88 0.0019 31.3 28.6 226 156-382 425-684 (894)
373 KOG2396 HAT (Half-A-TPR) repea 76.3 66 0.0014 29.9 28.2 84 55-141 87-170 (568)
374 COG5187 RPN7 26S proteasome re 76.3 48 0.001 28.3 12.8 69 252-320 115-188 (412)
375 PF04190 DUF410: Protein of un 75.5 49 0.0011 28.0 14.9 193 157-390 1-220 (260)
376 PF14689 SPOB_a: Sensor_kinase 75.2 8.2 0.00018 24.1 4.3 22 187-208 28-49 (62)
377 KOG2062 26S proteasome regulat 73.7 95 0.0021 30.5 15.8 182 94-281 42-239 (929)
378 PF04910 Tcf25: Transcriptiona 73.2 70 0.0015 28.7 20.1 121 47-173 18-166 (360)
379 KOG2396 HAT (Half-A-TPR) repea 72.7 82 0.0018 29.3 22.8 245 128-386 299-559 (568)
380 PF14689 SPOB_a: Sensor_kinase 72.7 11 0.00024 23.6 4.4 27 359-385 25-51 (62)
381 PRK10564 maltose regulon perip 71.9 12 0.00025 32.1 5.6 42 108-149 254-295 (303)
382 COG3947 Response regulator con 71.8 64 0.0014 27.7 15.5 70 289-359 281-355 (361)
383 PRK10941 hypothetical protein; 71.3 40 0.00086 28.7 8.7 75 291-367 185-261 (269)
384 KOG0890 Protein kinase of the 71.1 1.9E+02 0.0041 32.8 20.9 152 80-241 1388-1542(2382)
385 KOG1464 COP9 signalosome, subu 70.0 67 0.0015 27.1 17.6 185 123-308 39-252 (440)
386 KOG4648 Uncharacterized conser 69.3 33 0.00072 30.0 7.7 55 154-210 105-159 (536)
387 PF11846 DUF3366: Domain of un 68.6 29 0.00063 27.7 7.2 31 179-209 141-171 (193)
388 KOG2063 Vacuolar assembly/sort 68.5 1.4E+02 0.003 30.3 17.7 116 113-228 506-637 (877)
389 COG0735 Fur Fe2+/Zn2+ uptake r 68.4 33 0.00072 26.0 7.0 60 241-301 10-69 (145)
390 cd00280 TRFH Telomeric Repeat 67.9 59 0.0013 25.7 10.2 49 162-210 85-139 (200)
391 KOG0686 COP9 signalosome, subu 67.5 96 0.0021 28.0 14.6 24 149-172 153-176 (466)
392 PHA02875 ankyrin repeat protei 67.4 1E+02 0.0022 28.2 15.1 18 153-170 72-89 (413)
393 PF08424 NRDE-2: NRDE-2, neces 66.2 93 0.002 27.4 16.2 78 92-172 48-128 (321)
394 PF11817 Foie-gras_1: Foie gra 65.8 33 0.00072 28.8 7.3 58 186-243 182-244 (247)
395 KOG2066 Vacuolar assembly/sort 65.5 1.5E+02 0.0032 29.4 23.3 157 45-210 362-533 (846)
396 PRK10564 maltose regulon perip 65.4 19 0.00041 30.8 5.5 29 326-354 261-289 (303)
397 PF11848 DUF3368: Domain of un 65.3 25 0.00055 20.5 5.1 33 193-225 13-45 (48)
398 COG5159 RPN6 26S proteasome re 65.0 89 0.0019 26.7 14.7 198 152-350 9-234 (421)
399 PF09454 Vps23_core: Vps23 cor 64.8 12 0.00027 23.6 3.4 51 319-370 5-55 (65)
400 PF07064 RIC1: RIC1; InterPro 64.8 87 0.0019 26.5 14.9 31 77-107 84-114 (258)
401 PF11817 Foie-gras_1: Foie gra 64.4 55 0.0012 27.5 8.3 61 112-172 179-244 (247)
402 KOG0687 26S proteasome regulat 64.4 99 0.0021 27.0 13.4 136 248-387 66-211 (393)
403 KOG3364 Membrane protein invol 64.2 58 0.0013 24.3 8.0 67 74-140 31-100 (149)
404 PF11848 DUF3368: Domain of un 62.4 29 0.00063 20.3 5.0 30 299-328 14-43 (48)
405 KOG2034 Vacuolar sorting prote 61.7 1.8E+02 0.004 29.2 25.7 57 40-101 359-415 (911)
406 PF14669 Asp_Glu_race_2: Putat 61.4 82 0.0018 25.1 11.7 172 211-382 2-206 (233)
407 PF09477 Type_III_YscG: Bacter 61.1 57 0.0012 23.1 8.3 30 284-315 68-97 (116)
408 PF12862 Apc5: Anaphase-promot 60.9 51 0.0011 22.6 6.8 19 367-385 51-69 (94)
409 PF13762 MNE1: Mitochondrial s 60.4 72 0.0016 24.1 11.6 83 254-336 41-129 (145)
410 smart00777 Mad3_BUB1_I Mad3/BU 60.3 57 0.0012 24.0 6.6 43 128-170 80-123 (125)
411 PF08311 Mad3_BUB1_I: Mad3/BUB 60.1 66 0.0014 23.6 8.9 43 129-171 81-124 (126)
412 COG0735 Fur Fe2+/Zn2+ uptake r 60.1 52 0.0011 24.9 6.7 63 273-336 7-69 (145)
413 COG5108 RPO41 Mitochondrial DN 59.8 1E+02 0.0022 29.9 9.5 90 222-314 33-130 (1117)
414 KOG4567 GTPase-activating prot 59.8 74 0.0016 27.5 7.9 58 272-334 263-320 (370)
415 PF06552 TOM20_plant: Plant sp 59.7 86 0.0019 24.8 8.9 110 127-248 7-138 (186)
416 COG0790 FOG: TPR repeat, SEL1 59.6 1.1E+02 0.0025 26.2 21.8 83 123-212 53-143 (292)
417 PF11663 Toxin_YhaV: Toxin wit 57.8 14 0.00031 27.2 3.1 20 302-321 110-129 (140)
418 KOG2659 LisH motif-containing 57.8 1.1E+02 0.0023 25.3 8.4 18 120-137 73-90 (228)
419 PF07575 Nucleopor_Nup85: Nup8 56.9 34 0.00075 32.9 6.5 170 181-367 371-540 (566)
420 KOG4507 Uncharacterized conser 56.7 73 0.0016 30.3 8.0 87 265-352 620-706 (886)
421 PF11663 Toxin_YhaV: Toxin wit 56.6 12 0.00026 27.6 2.6 32 334-367 107-138 (140)
422 COG5108 RPO41 Mitochondrial DN 56.4 78 0.0017 30.6 8.2 90 80-172 33-129 (1117)
423 KOG3807 Predicted membrane pro 55.8 1.4E+02 0.0031 26.1 11.4 58 292-351 280-340 (556)
424 PF12862 Apc5: Anaphase-promot 55.7 64 0.0014 22.1 7.5 20 155-174 50-69 (94)
425 PF09670 Cas_Cas02710: CRISPR- 55.5 1.6E+02 0.0035 26.7 10.6 56 225-281 139-198 (379)
426 cd00280 TRFH Telomeric Repeat 55.0 1.1E+02 0.0023 24.4 11.0 66 127-196 85-157 (200)
427 COG5187 RPN7 26S proteasome re 54.9 1.4E+02 0.003 25.7 12.6 100 286-387 114-222 (412)
428 PF15297 CKAP2_C: Cytoskeleton 54.9 1.3E+02 0.0027 26.6 8.8 65 93-157 121-186 (353)
429 PF08424 NRDE-2: NRDE-2, neces 53.9 1.6E+02 0.0034 26.0 17.4 25 329-353 161-185 (321)
430 PHA02875 ankyrin repeat protei 53.9 1.8E+02 0.0038 26.6 16.0 217 46-287 6-230 (413)
431 PF14561 TPR_20: Tetratricopep 53.7 69 0.0015 21.8 7.7 53 74-126 21-73 (90)
432 smart00777 Mad3_BUB1_I Mad3/BU 53.3 88 0.0019 23.0 6.7 45 92-136 80-124 (125)
433 PRK13342 recombination factor 53.3 1.8E+02 0.004 26.6 16.3 54 230-283 243-301 (413)
434 KOG2062 26S proteasome regulat 53.2 2.4E+02 0.0052 27.9 21.3 162 81-246 65-239 (929)
435 KOG2422 Uncharacterized conser 53.1 2.1E+02 0.0046 27.3 15.7 149 75-227 284-460 (665)
436 KOG0403 Neoplastic transformat 52.8 1.7E+02 0.0038 26.9 9.4 126 30-161 464-589 (645)
437 KOG1498 26S proteasome regulat 52.8 1.8E+02 0.0038 26.3 15.0 202 88-291 25-252 (439)
438 PF14561 TPR_20: Tetratricopep 52.4 73 0.0016 21.7 8.5 30 145-174 21-50 (90)
439 KOG3807 Predicted membrane pro 52.0 1.7E+02 0.0036 25.7 11.2 55 156-210 285-339 (556)
440 cd08819 CARD_MDA5_2 Caspase ac 52.0 73 0.0016 21.6 7.2 13 301-313 50-62 (88)
441 PF02847 MA3: MA3 domain; Int 51.9 83 0.0018 22.3 6.7 19 259-277 9-27 (113)
442 PRK13342 recombination factor 51.6 2E+02 0.0042 26.5 18.6 37 300-336 243-279 (413)
443 KOG0292 Vesicle coat complex C 51.4 43 0.00093 33.4 5.9 92 299-390 1003-1117(1202)
444 PRK08691 DNA polymerase III su 51.3 2.5E+02 0.0054 27.9 11.0 47 162-210 180-226 (709)
445 PF09986 DUF2225: Uncharacteri 51.1 1.4E+02 0.0029 24.5 10.3 25 362-386 170-194 (214)
446 PF08311 Mad3_BUB1_I: Mad3/BUB 50.8 98 0.0021 22.7 9.1 43 340-382 81-124 (126)
447 PF10366 Vps39_1: Vacuolar sor 49.1 95 0.0021 22.1 7.8 26 290-315 42-67 (108)
448 KOG4567 GTPase-activating prot 49.0 1.2E+02 0.0025 26.4 7.4 58 237-299 263-320 (370)
449 KOG2297 Predicted translation 48.9 1.8E+02 0.0039 25.3 15.5 17 255-271 324-340 (412)
450 PRK11639 zinc uptake transcrip 48.9 1.1E+02 0.0024 23.9 7.1 45 257-301 30-74 (169)
451 PF00244 14-3-3: 14-3-3 protei 48.7 1.6E+02 0.0034 24.6 9.8 82 304-398 143-232 (236)
452 PF14853 Fis1_TPR_C: Fis1 C-te 48.7 59 0.0013 19.6 5.8 24 117-140 7-30 (53)
453 PRK14956 DNA polymerase III su 48.2 2.4E+02 0.0052 26.5 11.6 101 163-287 183-283 (484)
454 PF07064 RIC1: RIC1; InterPro 48.1 1.7E+02 0.0037 24.8 14.1 30 41-70 84-113 (258)
455 PF04090 RNA_pol_I_TF: RNA pol 48.1 1.1E+02 0.0024 24.6 7.0 49 77-126 43-91 (199)
456 PF10366 Vps39_1: Vacuolar sor 47.4 1E+02 0.0022 21.9 7.6 27 324-350 41-67 (108)
457 KOG0991 Replication factor C, 47.4 1.7E+02 0.0036 24.4 11.5 139 112-261 131-281 (333)
458 COG5116 RPN2 26S proteasome re 47.3 2.2E+02 0.0047 27.2 9.4 20 81-100 65-84 (926)
459 PF00244 14-3-3: 14-3-3 protei 47.0 1.7E+02 0.0037 24.4 9.5 48 339-386 143-198 (236)
460 PF10255 Paf67: RNA polymerase 45.9 67 0.0015 29.2 6.1 62 77-138 124-191 (404)
461 PF10475 DUF2450: Protein of u 45.9 2E+02 0.0043 24.9 9.4 26 255-280 130-155 (291)
462 cd08819 CARD_MDA5_2 Caspase ac 45.8 94 0.002 21.1 7.2 15 230-244 49-63 (88)
463 PF15297 CKAP2_C: Cytoskeleton 45.7 2.1E+02 0.0046 25.4 8.7 64 303-368 119-186 (353)
464 PRK09857 putative transposase; 45.7 2E+02 0.0043 24.9 8.8 64 292-356 211-274 (292)
465 KOG1586 Protein required for f 45.4 1.8E+02 0.0039 24.3 20.0 25 260-284 162-186 (288)
466 COG0790 FOG: TPR repeat, SEL1 45.1 2E+02 0.0043 24.7 22.2 83 86-175 52-142 (292)
467 PF09868 DUF2095: Uncharacteri 44.6 1.1E+02 0.0024 21.9 5.6 38 116-154 66-103 (128)
468 PRK09857 putative transposase; 44.3 2.1E+02 0.0046 24.8 9.0 16 304-319 257-272 (292)
469 PF10475 DUF2450: Protein of u 44.0 2.1E+02 0.0046 24.7 10.2 24 250-273 195-218 (291)
470 KOG2582 COP9 signalosome, subu 44.0 2.4E+02 0.0052 25.2 18.2 56 297-352 287-346 (422)
471 PF02847 MA3: MA3 domain; Int 42.5 1.2E+02 0.0026 21.4 6.5 20 153-172 9-28 (113)
472 PF09670 Cas_Cas02710: CRISPR- 42.4 2.6E+02 0.0057 25.3 12.0 16 87-102 143-158 (379)
473 PF09986 DUF2225: Uncharacteri 42.1 1.9E+02 0.0042 23.6 9.7 22 153-174 172-193 (214)
474 PRK09462 fur ferric uptake reg 42.0 1.5E+02 0.0033 22.4 6.9 63 276-339 6-69 (148)
475 COG2137 OraA Uncharacterized p 41.4 1.7E+02 0.0038 23.0 12.8 108 236-347 54-163 (174)
476 KOG4642 Chaperone-dependent E3 41.2 2.1E+02 0.0046 23.9 10.5 83 121-208 20-104 (284)
477 KOG2471 TPR repeat-containing 41.1 3.1E+02 0.0067 25.8 9.2 109 83-194 248-381 (696)
478 PF12926 MOZART2: Mitotic-spin 41.1 1.1E+02 0.0024 20.7 8.5 44 343-386 29-72 (88)
479 PF04097 Nic96: Nup93/Nic96; 40.9 3.6E+02 0.0078 26.4 18.9 28 288-315 325-355 (613)
480 PF04762 IKI3: IKI3 family; I 40.8 4.4E+02 0.0096 27.4 15.8 197 80-313 699-927 (928)
481 KOG4279 Serine/threonine prote 40.8 3.8E+02 0.0083 26.7 12.1 109 73-184 199-322 (1226)
482 COG5191 Uncharacterized conser 40.6 53 0.0012 28.4 4.3 66 286-352 106-172 (435)
483 PRK14951 DNA polymerase III su 40.4 3.7E+02 0.0079 26.4 12.2 84 163-249 186-282 (618)
484 PF04097 Nic96: Nup93/Nic96; 40.4 3.7E+02 0.0079 26.4 15.8 89 258-351 264-356 (613)
485 PF09477 Type_III_YscG: Bacter 40.3 1.4E+02 0.0029 21.4 11.5 80 125-212 20-99 (116)
486 PRK11639 zinc uptake transcrip 40.0 1.8E+02 0.0039 22.7 7.3 61 278-339 17-77 (169)
487 KOG1308 Hsp70-interacting prot 40.0 68 0.0015 28.2 4.9 90 51-144 126-215 (377)
488 KOG2659 LisH motif-containing 39.9 2.1E+02 0.0047 23.6 9.2 23 187-209 69-91 (228)
489 PRK11619 lytic murein transgly 39.6 3.9E+02 0.0084 26.4 32.8 181 195-381 254-463 (644)
490 PTZ00131 glycophorin-binding p 39.3 2.2E+02 0.0048 23.5 15.0 199 78-281 165-405 (413)
491 cd07153 Fur_like Ferric uptake 39.2 83 0.0018 22.4 4.9 45 257-301 5-49 (116)
492 PF08870 DUF1832: Domain of un 38.9 91 0.002 22.4 4.8 18 163-180 6-23 (113)
493 KOG2300 Uncharacterized conser 38.8 3.4E+02 0.0073 25.5 17.7 217 56-277 299-552 (629)
494 KOG4814 Uncharacterized conser 38.8 3.5E+02 0.0076 26.4 9.5 86 299-386 366-457 (872)
495 COG4976 Predicted methyltransf 38.3 90 0.002 25.8 5.1 55 297-352 5-59 (287)
496 PF09454 Vps23_core: Vps23 cor 38.2 1E+02 0.0023 19.5 4.7 48 111-159 8-55 (65)
497 PRK07003 DNA polymerase III su 38.0 4.5E+02 0.0097 26.7 14.4 47 162-210 180-226 (830)
498 KOG3636 Uncharacterized conser 37.7 3.3E+02 0.0072 25.1 14.4 186 77-264 57-272 (669)
499 KOG4814 Uncharacterized conser 37.6 2.5E+02 0.0055 27.3 8.4 86 87-173 366-455 (872)
500 PF10155 DUF2363: Uncharacteri 37.6 1.7E+02 0.0036 21.6 12.2 111 53-172 3-124 (126)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1e-56 Score=433.45 Aligned_cols=360 Identities=14% Similarity=0.169 Sum_probs=334.6
Q ss_pred chhHHHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHH
Q 015726 37 TIKEKKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVH 116 (401)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 116 (401)
+....++.+++.+.+.++.+.|.++|+.+... +..||..+|+.+|.+|++.|++++|.++|++|... +..+|..+|+.
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~-Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~-Gv~PdvvTyna 512 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEA-GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNA-GVEANVHTFGA 512 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc-CCCCCHHHHHH
Confidence 45667888899999999999999999998776 58889999999999999999999999999999854 45667999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhh-cCCCCCHHhHHHHHHHHHhc
Q 015726 117 SIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKV-YGIEPNSETYNKVIKSFCES 195 (401)
Q Consensus 117 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~ 195 (401)
+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+. .|+.||..+|++++.+|++.
T Consensus 513 LI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~ 592 (1060)
T PLN03218 513 LIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANA 592 (1060)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999643 57899999999999999999
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHH
Q 015726 196 GDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALL 275 (401)
Q Consensus 196 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 275 (401)
|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|
T Consensus 593 G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~ 672 (1060)
T PLN03218 593 GQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEIL 672 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 015726 276 DGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVP 355 (401)
Q Consensus 276 ~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 355 (401)
++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.|
T Consensus 673 ~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~P 752 (1060)
T PLN03218 673 QDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP 752 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhc-CCCCcccchhcC
Q 015726 356 HFSTMKSLVTGLASISKVAEANELIGLMKKR-FPKSGDMWNAAL 398 (401)
Q Consensus 356 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~ll 398 (401)
|..+|+.++.+|++.|++++|.+++++|.+. ..+|..+|++|+
T Consensus 753 d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLI 796 (1060)
T PLN03218 753 NTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT 796 (1060)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 9999999999999999999999999999887 778888898875
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.7e-55 Score=424.94 Aligned_cols=360 Identities=18% Similarity=0.277 Sum_probs=328.8
Q ss_pred hhHHHHHHHHHHhcCCChhHHHHHhhhccCCCCC-------------------------------CccHhHHHHHHHHHH
Q 015726 38 IKEKKRATIARLKSESNPFRILDICCGASLAPES-------------------------------PLDRMAFSIAVSKLS 86 (401)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-------------------------------~~~~~~~~~l~~~~~ 86 (401)
+......++..+.+.|+.+.|+++|++|...+-. .||..+|+.++.+|+
T Consensus 369 ~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~ 448 (1060)
T PLN03218 369 KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCA 448 (1060)
T ss_pred CchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 3344455555555666666666666665543211 168889999999999
Q ss_pred hCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 015726 87 QANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVK 166 (401)
Q Consensus 87 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 166 (401)
+.|+++.|.++|+.|... +..+|..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.
T Consensus 449 k~g~~e~A~~lf~~M~~~-Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl 527 (1060)
T PLN03218 449 SSQDIDGALRVLRLVQEA-GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF 527 (1060)
T ss_pred hCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 999999999999999854 5667799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh--CCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHH
Q 015726 167 RIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRR--KSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMME 244 (401)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 244 (401)
++|++|. ..|+.||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+.+|.+|++.|++++|.++|+.|.
T Consensus 528 ~lf~~M~-~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 528 GAYGIMR-SKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHHHHH-HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999995 459999999999999999999999999999999976 6789999999999999999999999999999999
Q ss_pred HcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhh
Q 015726 245 KCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYC 324 (401)
Q Consensus 245 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 324 (401)
+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+
T Consensus 607 e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~t 686 (1060)
T PLN03218 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVS 686 (1060)
T ss_pred HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc-CCCCcccchhcCC
Q 015726 325 FFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKR-FPKSGDMWNAALP 399 (401)
Q Consensus 325 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~ll~ 399 (401)
|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+. ..||..+|+++|.
T Consensus 687 ynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 687 YSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999887 7899999999874
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.5e-52 Score=398.81 Aligned_cols=347 Identities=17% Similarity=0.214 Sum_probs=269.9
Q ss_pred HHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCC-----------
Q 015726 41 KKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQ----------- 109 (401)
Q Consensus 41 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------- 109 (401)
.++..+..+...+++++|+++|+++....+..||..+|+.++.+|++.++++.+.+++..|...+ ..+
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g-~~~~~~~~n~Li~~ 167 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG-FEPDQYMMNRVLLM 167 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCcchHHHHHHHHH
Confidence 67888999999999999999999987655556666666666666666666666666666655332 222
Q ss_pred --------------------chhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHH----------------------
Q 015726 110 --------------------NERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVD---------------------- 147 (401)
Q Consensus 110 --------------------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------------------- 147 (401)
|..+|+.++.+|++.|++++|+++|++|.+.|+.|+..
T Consensus 168 y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~ 247 (697)
T PLN03081 168 HVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLH 247 (697)
T ss_pred HhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHH
Confidence 34456666666666666666666666665555444433
Q ss_pred -------------HHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 015726 148 -------------ALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIR 214 (401)
Q Consensus 148 -------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 214 (401)
+++.|+++|++.|++++|.++|++|. ++|..+||.++.+|++.|++++|.++|++|.+.|+.
T Consensus 248 ~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~ 322 (697)
T PLN03081 248 CCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP-----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322 (697)
T ss_pred HHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC-----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 34555666666667777777776664 467788888888888888888888888888888888
Q ss_pred CCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 015726 215 PNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLI 294 (401)
Q Consensus 215 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li 294 (401)
||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..+||+||
T Consensus 323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI 398 (697)
T PLN03081 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALI 398 (697)
T ss_pred CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888885 35888888888
Q ss_pred HHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHccCCH
Q 015726 295 HGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMA-KGWVPHFSTMKSLVTGLASISKV 373 (401)
Q Consensus 295 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~ 373 (401)
.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|.+ .|+.|+..+|+.++++|++.|++
T Consensus 399 ~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~ 478 (697)
T PLN03081 399 AGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLL 478 (697)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCH
Confidence 88888888888888888888888888888888888888888888888888888876 48888888888888888888888
Q ss_pred HHHHHHHHHHHhcCCCCcccchhcCC
Q 015726 374 AEANELIGLMKKRFPKSGDMWNAALP 399 (401)
Q Consensus 374 ~~a~~~~~~~~~~~~~~~~~~~~ll~ 399 (401)
++|.+++++|. ..|+..+|++||.
T Consensus 479 ~eA~~~~~~~~--~~p~~~~~~~Ll~ 502 (697)
T PLN03081 479 DEAYAMIRRAP--FKPTVNMWAALLT 502 (697)
T ss_pred HHHHHHHHHCC--CCCCHHHHHHHHH
Confidence 88888887763 5577788888763
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=7.5e-50 Score=391.47 Aligned_cols=349 Identities=15% Similarity=0.187 Sum_probs=299.3
Q ss_pred hhHHHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHH
Q 015726 38 IKEKKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHS 117 (401)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 117 (401)
....++.++..+.+.|+.+.|..+|+.+.. +|..+|+.+|.+|++.|++++|.++|++|... +..||..+|+.+
T Consensus 221 ~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~-----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~-g~~Pd~~ty~~l 294 (857)
T PLN03077 221 DVDVVNALITMYVKCGDVVSARLVFDRMPR-----RDCISWNAMISGYFENGECLEGLELFFTMREL-SVDPDLMTITSV 294 (857)
T ss_pred ccchHhHHHHHHhcCCCHHHHHHHHhcCCC-----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCChhHHHHH
Confidence 344677888999999999999999998853 47788999999999999999999999999854 466678899999
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCC
Q 015726 118 IVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGD 197 (401)
Q Consensus 118 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 197 (401)
+.+|++.|+++.|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..+|++++.+|++.|+
T Consensus 295 l~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-----~~d~~s~n~li~~~~~~g~ 369 (857)
T PLN03077 295 ISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME-----TKDAVSWTAMISGYEKNGL 369 (857)
T ss_pred HHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCeeeHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999985 5788899999999999999
Q ss_pred hhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHH
Q 015726 198 SSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDG 277 (401)
Q Consensus 198 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 277 (401)
+++|.++|++|.+.|+.||..||+.++.+|++.|+++++.++++.+.+.|+.|+..+|+.++.+|++.|++++|.++|++
T Consensus 370 ~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~ 449 (857)
T PLN03077 370 PDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHN 449 (857)
T ss_pred HHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 99999999999888889999999999988888888888888888888888888888888888888877777777777766
Q ss_pred HHHC------------------------------CC--------------------------------------------
Q 015726 278 MLSR------------------------------GI-------------------------------------------- 283 (401)
Q Consensus 278 ~~~~------------------------------~~-------------------------------------------- 283 (401)
|.+. ++
T Consensus 450 m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~na 529 (857)
T PLN03077 450 IPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNA 529 (857)
T ss_pred CCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechH
Confidence 5432 12
Q ss_pred ---------------------CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHH
Q 015726 284 ---------------------KPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETAL 342 (401)
Q Consensus 284 ---------------------~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 342 (401)
.||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.
T Consensus 530 Li~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~ 609 (857)
T PLN03077 530 LLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGL 609 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHH
Confidence 34556677888888888899999999999998899999999999999999999999999
Q ss_pred HHHHHHH-HCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcccchhcCC
Q 015726 343 KVCRASM-AKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSGDMWNAALP 399 (401)
Q Consensus 343 ~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ll~ 399 (401)
++|+.|. +.|+.|+..+|+.++.+|++.|++++|.+++++|. ..||..+|++||.
T Consensus 610 ~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~--~~pd~~~~~aLl~ 665 (857)
T PLN03077 610 EYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP--ITPDPAVWGALLN 665 (857)
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC--CCCCHHHHHHHHH
Confidence 9999998 56889999999999999999999999999999884 5688888988864
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.6e-49 Score=379.07 Aligned_cols=345 Identities=16% Similarity=0.175 Sum_probs=317.9
Q ss_pred chhHHHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCC-----------
Q 015726 37 TIKEKKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRP----------- 105 (401)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----------- 105 (401)
+....++.++..+.+.|+.+.|.++|+.+.. ||..+|+.++.+|++.|++++|.++|++|...+
T Consensus 156 ~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~-----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~l 230 (697)
T PLN03081 156 PDQYMMNRVLLMHVKCGMLIDARRLFDEMPE-----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVM 230 (697)
T ss_pred cchHHHHHHHHHHhcCCCHHHHHHHHhcCCC-----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHH
Confidence 5566788899999999999999999999853 478899999999999999999999999997432
Q ss_pred -----------------------CCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 015726 106 -----------------------DLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNY 162 (401)
Q Consensus 106 -----------------------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 162 (401)
+..++..+++.+|.+|++.|++++|.++|++|. .+|..+||.++.+|++.|++
T Consensus 231 l~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~ 306 (697)
T PLN03081 231 LRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYS 306 (697)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCH
Confidence 223456677889999999999999999999997 56899999999999999999
Q ss_pred HHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHH
Q 015726 163 EEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQM 242 (401)
Q Consensus 163 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 242 (401)
++|.++|++|. ..|+.||..||++++.+|++.|++++|.+++..|.+.|+.||..+|+.++++|++.|++++|.++|++
T Consensus 307 ~eA~~lf~~M~-~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~ 385 (697)
T PLN03081 307 EEALCLYYEMR-DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDR 385 (697)
T ss_pred HHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHh
Confidence 99999999995 55999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHh-CCCCCC
Q 015726 243 MEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTN-GGCEPD 321 (401)
Q Consensus 243 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~~~ 321 (401)
|.+ ||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|.+ .|+.|+
T Consensus 386 m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~ 461 (697)
T PLN03081 386 MPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPR 461 (697)
T ss_pred CCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC
Confidence 964 688999999999999999999999999999999999999999999999999999999999999986 599999
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcccchhcC
Q 015726 322 SYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSGDMWNAAL 398 (401)
Q Consensus 322 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ll 398 (401)
..+|+.++.+|++.|++++|.+++++| ++.|+..+|++++.+|...|+++.|.++++++.+..|.+..+|+.|+
T Consensus 462 ~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~ 535 (697)
T PLN03081 462 AMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLL 535 (697)
T ss_pred ccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHH
Confidence 999999999999999999999998765 67899999999999999999999999999999888888888887765
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.7e-49 Score=386.58 Aligned_cols=341 Identities=16% Similarity=0.210 Sum_probs=316.5
Q ss_pred HHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHH
Q 015726 41 KKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVL 120 (401)
Q Consensus 41 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 120 (401)
..+.++..+.+.|+.+.|.++|+.+.. +|..+|+.+|.+|++.|++++|+++|++|... +..||..+|+.++.+
T Consensus 123 ~~n~li~~~~~~g~~~~A~~~f~~m~~-----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~-g~~Pd~~t~~~ll~~ 196 (857)
T PLN03077 123 LGNAMLSMFVRFGELVHAWYVFGKMPE-----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWA-GVRPDVYTFPCVLRT 196 (857)
T ss_pred HHHHHHHHHHhCCChHHHHHHHhcCCC-----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCChhHHHHHHHH
Confidence 446777888899999999999998853 47889999999999999999999999999854 567779999999999
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhH
Q 015726 121 YGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSS 200 (401)
Q Consensus 121 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 200 (401)
|+..++++.+.+++..|.+.|+.|+..+++.++.+|++.|++++|.++|++|. .||..+||++|.+|++.|++++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~-----~~d~~s~n~li~~~~~~g~~~e 271 (857)
T PLN03077 197 CGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP-----RRDCISWNAMISGYFENGECLE 271 (857)
T ss_pred hCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC-----CCCcchhHHHHHHHHhCCCHHH
Confidence 99999999999999999999999999999999999999999999999999996 6899999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015726 201 VYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLS 280 (401)
Q Consensus 201 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 280 (401)
|+++|++|...|+.||..||+.++.+|++.|+.+.+.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|.
T Consensus 272 Al~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~- 350 (857)
T PLN03077 272 GLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME- 350 (857)
T ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 015726 281 RGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTM 360 (401)
Q Consensus 281 ~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 360 (401)
.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.|+..++
T Consensus 351 ---~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~ 427 (857)
T PLN03077 351 ---TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVA 427 (857)
T ss_pred ---CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhcCCCCcccchhcCC
Q 015726 361 KSLVTGLASISKVAEANELIGLMKKRFPKSGDMWNAALP 399 (401)
Q Consensus 361 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ll~ 399 (401)
+.|+.+|++.|++++|.++|++|.+ +|..+||++|.
T Consensus 428 n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~ 463 (857)
T PLN03077 428 NALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIA 463 (857)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHH
Confidence 9999999999999999999999865 57788888874
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.94 E-value=9e-23 Score=203.97 Aligned_cols=342 Identities=14% Similarity=0.043 Sum_probs=225.1
Q ss_pred HHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHH
Q 015726 42 KRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLY 121 (401)
Q Consensus 42 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 121 (401)
+......+...+++++|.+.|..+... .+.+...+..+...+...|++++|.+.++.+.... +.+...+..+...+
T Consensus 468 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~ 543 (899)
T TIGR02917 468 HNLLGAIYLGKGDLAKAREAFEKALSI--EPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID--PKNLRAILALAGLY 543 (899)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHH
Confidence 333444555556666666666555432 22234455555566666666666666666655221 23345556666666
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHH
Q 015726 122 GQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSV 201 (401)
Q Consensus 122 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 201 (401)
.+.|++++|..+++++.+.+ +.+...+..+...+...|++++|..+++.+.+. .+.+...|..+...+.+.|++++|
T Consensus 544 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A 620 (899)
T TIGR02917 544 LRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADA--APDSPEAWLMLGRAQLAAGDLNKA 620 (899)
T ss_pred HHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 66666666666666665554 345555666666666677777777777666543 244556677777777777777777
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 015726 202 YSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSR 281 (401)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 281 (401)
...|+++.+.. +.+...+..+..++.+.|++++|..+++++.+.. +.+..++..+...+...|++++|.++++.+.+.
T Consensus 621 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 698 (899)
T TIGR02917 621 VSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ 698 (899)
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 77777776543 3355566667777777777777777777776653 334566777777777777777777777777666
Q ss_pred CCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 015726 282 GIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMK 361 (401)
Q Consensus 282 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 361 (401)
+ ..+...+..+...+...|++++|.+.|+.+.+.+ |+..++..++.++.+.|++++|.+.++++.+.. +.+...+.
T Consensus 699 ~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~ 774 (899)
T TIGR02917 699 H-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRT 774 (899)
T ss_pred C-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 4 3355667777777777888888888888777653 444666777777778888888888887777654 55677777
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhcCCCCcccchh
Q 015726 362 SLVTGLASISKVAEANELIGLMKKRFPKSGDMWNA 396 (401)
Q Consensus 362 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 396 (401)
.+...|...|++++|.+.|+++.+..|.+...++.
T Consensus 775 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 809 (899)
T TIGR02917 775 ALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNN 809 (899)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 78888888888888888888888877777666554
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.94 E-value=2.4e-22 Score=200.97 Aligned_cols=336 Identities=12% Similarity=0.049 Sum_probs=187.4
Q ss_pred HHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCC
Q 015726 47 ARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANM 126 (401)
Q Consensus 47 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 126 (401)
..+...++.+.|+..+..+... .+.+...+..++..+.+.|++++|.++++.+.... +.+...+..+..+|...|+
T Consensus 541 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 616 (899)
T TIGR02917 541 GLYLRTGNEEEAVAWLEKAAEL--NPQEIEPALALAQYYLGKGQLKKALAILNEAADAA--PDSPEAWLMLGRAQLAAGD 616 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCC
Confidence 3334444445555544444322 12233344445555555555555555555544221 2223455555555555555
Q ss_pred hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHH
Q 015726 127 IDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILA 206 (401)
Q Consensus 127 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 206 (401)
+++|...|+.+.+.. +.+...+..+..++...|++++|..+|+++.+.. +.+..++..+...+...|++++|.++++
T Consensus 617 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 693 (899)
T TIGR02917 617 LNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK--PDNTEAQIGLAQLLLAAKRTESAKKIAK 693 (899)
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555555555555443 3344445555555555555555555555554321 2334455555555555555555555555
Q ss_pred HHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC
Q 015726 207 EMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPN 286 (401)
Q Consensus 207 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~ 286 (401)
.+.+.+ +.+...+..+...+...|++++|.+.++.+...+ |+..++..+..++.+.|++++|.+.++++.+.. +.+
T Consensus 694 ~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~ 769 (899)
T TIGR02917 694 SLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PND 769 (899)
T ss_pred HHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCC
Confidence 555443 3344555555566666666666666666665543 333455556666666666666666666666553 235
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 015726 287 LDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTG 366 (401)
Q Consensus 287 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 366 (401)
...+..+...|...|++++|.++|+++.+.. +.+...+..+...+...|+ ++|..+++++.+.. +.+..++..+..+
T Consensus 770 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 846 (899)
T TIGR02917 770 AVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWL 846 (899)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 5666666666666677777777777666553 3455566666666666666 55666666666543 3344556666667
Q ss_pred HHccCCHHHHHHHHHHHHhcCCCCcccchh
Q 015726 367 LASISKVAEANELIGLMKKRFPKSGDMWNA 396 (401)
Q Consensus 367 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 396 (401)
+...|++++|.++++++.+..|.+..++..
T Consensus 847 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 876 (899)
T TIGR02917 847 LVEKGEADRALPLLRKAVNIAPEAAAIRYH 876 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCChHHHHH
Confidence 777777777777777777776666655543
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=6.3e-22 Score=178.53 Aligned_cols=296 Identities=9% Similarity=0.058 Sum_probs=225.6
Q ss_pred HHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHh
Q 015726 82 VSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQS---VDALNALLLGCIL 158 (401)
Q Consensus 82 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 158 (401)
...+...|++++|+..|+++.... +.+..++..+...+...|++++|..+++.+.+.+..++ ...+..+...|.+
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 344567788888999998888432 34456788888888888999999998888877532221 2456777888888
Q ss_pred cCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH----HhHHHHHHHHHccCChH
Q 015726 159 SKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNA----TDFGLLLAGFYKEHKYE 234 (401)
Q Consensus 159 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~ 234 (401)
.|++++|..+|+++.+. .+.+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|+++
T Consensus 120 ~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 197 (389)
T PRK11788 120 AGLLDRAEELFLQLVDE--GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLD 197 (389)
T ss_pred CCCHHHHHHHHHHHHcC--CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHH
Confidence 89999999999888653 2456678888888888899999999999888776433221 23456667778888999
Q ss_pred HHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 015726 235 DVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMT 314 (401)
Q Consensus 235 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 314 (401)
+|...++++.+.. +.+...+..+...+.+.|++++|.++|+++.+.+......+++.++.+|...|++++|.+.++++.
T Consensus 198 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 198 AARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred HHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999998887764 334567777888888899999999999988876433234667888888888999999999998888
Q ss_pred hCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc---cCCHHHHHHHHHHHHhc
Q 015726 315 NGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLAS---ISKVAEANELIGLMKKR 386 (401)
Q Consensus 315 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~ 386 (401)
+. .|+...+..++..+.+.|++++|..+++++.+. .|+...+..++..+.. .|+.+++..+++++.++
T Consensus 277 ~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 277 EE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred Hh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 75 466666788888888899999999999888765 5777788877777664 55888888888888765
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=2e-22 Score=181.76 Aligned_cols=330 Identities=15% Similarity=0.108 Sum_probs=264.7
Q ss_pred HHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCC--chhHHHHHHHHHHhcC
Q 015726 48 RLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQ--NERFHVHSIVLYGQAN 125 (401)
Q Consensus 48 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~ 125 (401)
.+...++++.|+..|..+... .+.+..++..+...+...|++++|..+++.+...+.... ....+..+...|.+.|
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKV--DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 345678899999999998765 344677899999999999999999999999986544332 1246788899999999
Q ss_pred ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCC---HHhHHHHHHHHHhcCChhHHH
Q 015726 126 MIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPN---SETYNKVIKSFCESGDSSSVY 202 (401)
Q Consensus 126 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~ 202 (401)
++++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.....+. ...+..+...+.+.|++++|.
T Consensus 122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 9999999999998764 567888999999999999999999999999764211111 123556777888999999999
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 015726 203 SILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRG 282 (401)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 282 (401)
+.|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......+++.++.+|.+.|++++|...++++.+.
T Consensus 201 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 278 (389)
T PRK11788 201 ALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE- 278 (389)
T ss_pred HHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 9999998763 34566788888999999999999999999987643333467889999999999999999999999887
Q ss_pred CCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc---cCCHHHHHHHHHHHHHCCCCCCHHH
Q 015726 283 IKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQ---GGEYETALKVCRASMAKGWVPHFST 359 (401)
Q Consensus 283 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~ 359 (401)
.|+...+..++..+.+.|++++|..+++++.+. .|+...+..++..+.. .|+.+++..++++|.+.++.|++.
T Consensus 279 -~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~- 354 (389)
T PRK11788 279 -YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR- 354 (389)
T ss_pred -CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC-
Confidence 466667788999999999999999999999875 6898899988887764 568999999999999988877776
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcccchhcC
Q 015726 360 MKSLVTGLASISKVAEANELIGLMKKRFPKSGDMWNAAL 398 (401)
Q Consensus 360 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ll 398 (401)
..|.++|....... ...|+..+|.++.
T Consensus 355 -----~~c~~cg~~~~~~~-------~~c~~c~~~~~~~ 381 (389)
T PRK11788 355 -----YRCRNCGFTARTLY-------WHCPSCKAWETIK 381 (389)
T ss_pred -----EECCCCCCCCccce-------eECcCCCCccCcC
Confidence 34666665432211 1345666666653
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.91 E-value=3.8e-20 Score=175.28 Aligned_cols=337 Identities=12% Similarity=-0.002 Sum_probs=272.5
Q ss_pred HHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHH
Q 015726 41 KKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVL 120 (401)
Q Consensus 41 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 120 (401)
-...++..+-+.|+++.|+.++...... .+.+...+..++.+....|++++|++.++++.... |.+...+..+...
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~--~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~--P~~~~a~~~la~~ 119 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLT--AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN--VCQPEDVLLVASV 119 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHh--CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHH
Confidence 4556677888899999999999888755 33345567777788888999999999999998432 3445678888999
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhH
Q 015726 121 YGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSS 200 (401)
Q Consensus 121 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 200 (401)
+...|++++|...+++..+.. +.+...+..+..++...|++++|...++.+.... +.+...+..+ ..+.+.|++++
T Consensus 120 l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~-~~l~~~g~~~e 195 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIATC-LSFLNKSRLPE 195 (656)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHHH-HHHHHcCCHHH
Confidence 999999999999999998874 5567888899999999999999999999886542 2233334333 45788999999
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHH----HHHHHH
Q 015726 201 VYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEE----AKALLD 276 (401)
Q Consensus 201 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~----a~~~~~ 276 (401)
|...++.+.+....++...+..+...+...|++++|...++.+.+.. +.+...+..+..++...|++++ |...|+
T Consensus 196 A~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~ 274 (656)
T PRK15174 196 DHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWR 274 (656)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Confidence 99999998776433445555666788899999999999999998875 4467788889999999999986 899999
Q ss_pred HHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 015726 277 GMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPH 356 (401)
Q Consensus 277 ~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 356 (401)
+..+... .+...+..+...+...|++++|...+++..+.. +.+...+..+..++.+.|++++|...++++...+ |+
T Consensus 275 ~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~ 350 (656)
T PRK15174 275 HALQFNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GV 350 (656)
T ss_pred HHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cc
Confidence 9988743 257889999999999999999999999999864 3345667788899999999999999999998764 44
Q ss_pred H-HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC
Q 015726 357 F-STMKSLVTGLASISKVAEANELIGLMKKRFPKS 390 (401)
Q Consensus 357 ~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 390 (401)
. ..+..+..++...|+.++|...|++..+..|.+
T Consensus 351 ~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 351 TSKWNRYAAAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 3 344456778899999999999999998886654
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.86 E-value=5.5e-18 Score=160.67 Aligned_cols=307 Identities=10% Similarity=0.090 Sum_probs=251.3
Q ss_pred hHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 015726 76 MAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLG 155 (401)
Q Consensus 76 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 155 (401)
.-...++..+.+.|++++|..+++...... +.+...+..++.+....|+++.|...|+++.+.. +.+...+..+...
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~ 119 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASV 119 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 345567888899999999999999988433 3334567777788888999999999999999876 5677888889999
Q ss_pred HHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHH
Q 015726 156 CILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYED 235 (401)
Q Consensus 156 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 235 (401)
+...|++++|...+++..+.. +.+...+..+...+...|++++|...++.+..... .+...+..+ ..+...|++++
T Consensus 120 l~~~g~~~~Ai~~l~~Al~l~--P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~e 195 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWLAF--SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIATC-LSFLNKSRLPE 195 (656)
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHH-HHHHHcCCHHH
Confidence 999999999999999997642 44566788899999999999999999998876532 233344333 34788999999
Q ss_pred HHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHH----HHHHHH
Q 015726 236 VGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEG----AKKLFA 311 (401)
Q Consensus 236 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~----a~~~~~ 311 (401)
|...++.+.+....++...+..+..++.+.|++++|...+++..+... .+...+..+...+...|++++ |...++
T Consensus 196 A~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~ 274 (656)
T PRK15174 196 DHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQAAEHWR 274 (656)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Confidence 999999987764334445556667888999999999999999998753 357788889999999999986 899999
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCc
Q 015726 312 SMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSG 391 (401)
Q Consensus 312 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 391 (401)
+..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++.+.|++++|...++++.+..|.+.
T Consensus 275 ~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~ 352 (656)
T PRK15174 275 HALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTS 352 (656)
T ss_pred HHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccch
Confidence 998763 3356788899999999999999999999999875 44567788899999999999999999999998877664
Q ss_pred c
Q 015726 392 D 392 (401)
Q Consensus 392 ~ 392 (401)
.
T Consensus 353 ~ 353 (656)
T PRK15174 353 K 353 (656)
T ss_pred H
Confidence 4
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.86 E-value=3e-17 Score=156.03 Aligned_cols=332 Identities=11% Similarity=-0.003 Sum_probs=188.1
Q ss_pred HHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHh
Q 015726 44 ATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQ 123 (401)
Q Consensus 44 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 123 (401)
..-..+...++++.|+..|..+... .|+...|..+..++.+.|++++|++.++...... |.+...+..+..+|..
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~---~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIEC---KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD--PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHH
Confidence 3445667788999999999987643 2356788889999999999999999999988432 3446677788888888
Q ss_pred cCChHHHHHHHHHHhhC---------------------------------------------------------------
Q 015726 124 ANMIDHAMQTFEEMDKY--------------------------------------------------------------- 140 (401)
Q Consensus 124 ~~~~~~a~~~~~~~~~~--------------------------------------------------------------- 140 (401)
.|++++|+..|......
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence 88888886544332111
Q ss_pred -------------------------------------C-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCC
Q 015726 141 -------------------------------------G-L-RQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPN 181 (401)
Q Consensus 141 -------------------------------------~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 181 (401)
+ . +.....++.+...+...|++++|+..|++..+. .|+
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l---~P~ 363 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL---DPR 363 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCC
Confidence 0 0 011122333333444455555555555555432 222
Q ss_pred -HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHH
Q 015726 182 -SETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQ 260 (401)
Q Consensus 182 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 260 (401)
...|..+...+...|++++|...|++..+.. +.+...|..+...+...|++++|...|++..+.. +.+...+..+..
T Consensus 364 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~ 441 (615)
T TIGR00990 364 VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGV 441 (615)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHH
Confidence 3344555555555555555555555554432 2234455555555555666666666665555543 223444555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHh------hHHHHHHHHHc
Q 015726 261 SLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSY------CFFMFTYFLCQ 334 (401)
Q Consensus 261 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~------~~~~li~~~~~ 334 (401)
++.+.|++++|...|++..+.. +-+...|+.+...+...|++++|.+.|++..+.....+.. .++.....+..
T Consensus 442 ~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~ 520 (615)
T TIGR00990 442 TQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQW 520 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHH
Confidence 5556666666666666555442 1134555555666666666666666666655432110000 11111122233
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 015726 335 GGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRF 387 (401)
Q Consensus 335 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 387 (401)
.|++++|.+++++..... +.+...+..+...+...|++++|.+.|++..+..
T Consensus 521 ~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 521 KQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred hhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 466666666666655543 2233445666666666666666666666665543
No 14
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.84 E-value=1.3e-16 Score=161.41 Aligned_cols=334 Identities=11% Similarity=0.036 Sum_probs=232.9
Q ss_pred HHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhC-CCCCCchhHH-----------
Q 015726 47 ARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTR-PDLRQNERFH----------- 114 (401)
Q Consensus 47 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~----------- 114 (401)
..+...+++++|+..|+.+... .|.+...+..+..++.+.|++++|+..|++.... +.... ...+
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~-~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRA--NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSN-RDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccc-hhHHHHHHHhhhHHH
Confidence 4456678999999999988754 3346788999999999999999999999998843 32221 1111
Q ss_pred -HHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHH-----
Q 015726 115 -VHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKV----- 188 (401)
Q Consensus 115 -~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l----- 188 (401)
......+.+.|++++|++.|+++.+.. +.+...+..+..++...|++++|++.|++..+.. +.+...+..+
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L~~l~~ 430 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVRGLANLYR 430 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 122446778999999999999998875 5567788888999999999999999999987542 2223233222
Q ss_pred -------------------------------------HHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccC
Q 015726 189 -------------------------------------IKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEH 231 (401)
Q Consensus 189 -------------------------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 231 (401)
...+...|++++|.+.|++..+.. +-+...+..+...|.+.|
T Consensus 431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 233446788888888888887753 335566777888888889
Q ss_pred ChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHC------------------------------
Q 015726 232 KYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSR------------------------------ 281 (401)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------------------------------ 281 (401)
++++|...++++.+.. +.+...+..+...+...++.++|...++.+...
T Consensus 510 ~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 510 QRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 9999988888887643 222332322222333344444444433322110
Q ss_pred ---------CCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 015726 282 ---------GIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKG 352 (401)
Q Consensus 282 ---------~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 352 (401)
..+.+...+..+...+.+.|++++|++.|++..+.. +.+...+..++..+...|++++|.+.++...+..
T Consensus 589 ~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~ 667 (1157)
T PRK11447 589 EAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA 667 (1157)
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC
Confidence 012344556667777888888888888888888753 3356778888888888888888888888777543
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC
Q 015726 353 WVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKS 390 (401)
Q Consensus 353 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 390 (401)
+.+......+..++...|++++|.++++++.+..+.+
T Consensus 668 -p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~ 704 (1157)
T PRK11447 668 -NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQ 704 (1157)
T ss_pred -CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccC
Confidence 3345566777788888888999998888888765443
No 15
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.83 E-value=2.5e-16 Score=152.53 Aligned_cols=343 Identities=10% Similarity=0.015 Sum_probs=224.5
Q ss_pred HHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHH
Q 015726 42 KRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLY 121 (401)
Q Consensus 42 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 121 (401)
...+...+...++++.|+++++..... .|.+...+..+...+...|++++|+..++++.... |.+.. +..+..++
T Consensus 52 ~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~--P~~~~-~~~la~~l 126 (765)
T PRK10049 52 YAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA--PDKAN-LLALAYVY 126 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHH-HHHHHHHH
Confidence 455566778888888888888886544 33355667777888888888888888888887442 33344 77777788
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhc-----------------------------
Q 015726 122 GQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEF----------------------------- 172 (401)
Q Consensus 122 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----------------------------- 172 (401)
...|++++|+..++++.+.. +.+...+..+..++...+..+.|++.++..
T Consensus 127 ~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~ 205 (765)
T PRK10049 127 KRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSE 205 (765)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccCh
Confidence 88888888888888888765 445556666666666666666555444432
Q ss_pred -----------------hhhcCCCCCHH-hH----HHHHHHHHhcCChhHHHHHHHHHHhCCCC-CCHHhHHHHHHHHHc
Q 015726 173 -----------------PKVYGIEPNSE-TY----NKVIKSFCESGDSSSVYSILAEMRRKSIR-PNATDFGLLLAGFYK 229 (401)
Q Consensus 173 -----------------~~~~~~~~~~~-~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~ 229 (401)
.+.....|+.. .+ ...+..+...|++++|+..|+++.+.+.+ |+. .-..+..+|..
T Consensus 206 ~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~ 284 (765)
T PRK10049 206 KERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLK 284 (765)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHh
Confidence 21111112211 11 01123345667788888888887766422 222 22224667778
Q ss_pred cCChHHHHHHHHHHHHcCCCC---CchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CcC---HHHHHH
Q 015726 230 EHKYEDVGKVLQMMEKCGIAS---GVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGI-----------KPN---LDTYKH 292 (401)
Q Consensus 230 ~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----------~p~---~~~~~~ 292 (401)
.|++++|+..|+.+.+..... .......+..++...|++++|..+++.+..... .|+ ...+..
T Consensus 285 ~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~ 364 (765)
T PRK10049 285 LHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSL 364 (765)
T ss_pred cCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHH
Confidence 888888888888776543111 123345556667778888888888887776521 122 123455
Q ss_pred HHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 015726 293 LIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISK 372 (401)
Q Consensus 293 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 372 (401)
+...+...|+.++|+++++++.... +.+...+..+...+...|++++|++.+++..... +.+...+...+..+...|+
T Consensus 365 ~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~ 442 (765)
T PRK10049 365 LSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQE 442 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCC
Confidence 6667777888888888888877653 3446677777777888888888888888777654 3345666677777778888
Q ss_pred HHHHHHHHHHHHhcCCCCccc
Q 015726 373 VAEANELIGLMKKRFPKSGDM 393 (401)
Q Consensus 373 ~~~a~~~~~~~~~~~~~~~~~ 393 (401)
+++|..+++++.+..|.+..+
T Consensus 443 ~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 443 WRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred HHHHHHHHHHHHHhCCCCHHH
Confidence 888888888888877776543
No 16
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.83 E-value=3.6e-16 Score=158.17 Aligned_cols=337 Identities=9% Similarity=-0.001 Sum_probs=243.2
Q ss_pred HHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHH------------HHHHHHHHhCCCchHHHHHHHHhhhCCCCC
Q 015726 41 KKRATIARLKSESNPFRILDICCGASLAPESPLDRMAF------------SIAVSKLSQANHFNAISQLLEELKTRPDLR 108 (401)
Q Consensus 41 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 108 (401)
.+......+...+++++|++.|+.+....+..+....| ......+.+.|++++|++.|+++.... |
T Consensus 305 a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~--P 382 (1157)
T PRK11447 305 ALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD--N 382 (1157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--C
Confidence 34445577788899999999998876432222222222 122456778999999999999998443 3
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH------------------------------------
Q 015726 109 QNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNAL------------------------------------ 152 (401)
Q Consensus 109 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------------------------------ 152 (401)
.+...+..+...+...|++++|++.|++..+.. +.+...+..+
T Consensus 383 ~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~ 461 (1157)
T PRK11447 383 TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQN 461 (1157)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhh
Confidence 445677788899999999999999999988764 3333333322
Q ss_pred ------HHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 015726 153 ------LLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAG 226 (401)
Q Consensus 153 ------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 226 (401)
...+...|++++|++.|++..+.. +-+...+..+...|.+.|++++|...++++.+.. +.+...+..+...
T Consensus 462 ~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~ 538 (1157)
T PRK11447 462 DRLAQQAEALENQGKWAQAAELQRQRLALD--PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLY 538 (1157)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence 233456788999999999887652 3345677788899999999999999999987653 2233333333333
Q ss_pred HHccCChHHHHHHHHHHHHc---------------------------------------CCCCCchhHHHHHHHHHhcCC
Q 015726 227 FYKEHKYEDVGKVLQMMEKC---------------------------------------GIASGVNVYNIRIQSLCKLKR 267 (401)
Q Consensus 227 ~~~~~~~~~a~~~~~~~~~~---------------------------------------~~~~~~~~~~~ll~~~~~~~~ 267 (401)
+...++.++|...++.+... ..+.+...+..+...+.+.|+
T Consensus 539 l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~ 618 (1157)
T PRK11447 539 LSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGD 618 (1157)
T ss_pred HHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCC
Confidence 34444444444443322100 124455667788899999999
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHH
Q 015726 268 SEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRA 347 (401)
Q Consensus 268 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 347 (401)
+++|+..|++..+... .+...+..+...|...|++++|.+.++...+.. +.+...+..+..++...|++++|.+++++
T Consensus 619 ~~~A~~~y~~al~~~P-~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~ 696 (1157)
T PRK11447 619 YAAARAAYQRVLTREP-GNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNR 696 (1157)
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 9999999999998743 367889999999999999999999999887642 23455667788889999999999999999
Q ss_pred HHHCCC--CC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 015726 348 SMAKGW--VP---HFSTMKSLVTGLASISKVAEANELIGLMKK 385 (401)
Q Consensus 348 ~~~~~~--~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 385 (401)
+..... +| +...+..+...+...|++++|++.|++...
T Consensus 697 al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 697 LIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 887532 22 234666778889999999999999999875
No 17
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.83 E-value=6.9e-16 Score=149.47 Aligned_cols=344 Identities=12% Similarity=0.074 Sum_probs=255.5
Q ss_pred HHHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHH
Q 015726 40 EKKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIV 119 (401)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 119 (401)
..+..-+.+....|+.++|++++...... .+.+...+..+...+.+.|++++|.++|++..... |.+...+..+..
T Consensus 16 ~~~~d~~~ia~~~g~~~~A~~~~~~~~~~--~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~ 91 (765)
T PRK10049 16 NQIADWLQIALWAGQDAEVITVYNRYRVH--MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDDYQRGLIL 91 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 34455678889999999999999988652 23456679999999999999999999999987442 333557778888
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChh
Q 015726 120 LYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSS 199 (401)
Q Consensus 120 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 199 (401)
.+...|++++|+..+++..+.. +.+.. +..+..++...|+.++|+..++++.+.. +.+...+..+...+...+..+
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~--P~~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA--PQTQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCChH
Confidence 9999999999999999998874 55666 8888899999999999999999998652 334445555666665555555
Q ss_pred HHHH----------------------------------------------HHHHHHhC-CCCCCHH-hHH----HHHHHH
Q 015726 200 SVYS----------------------------------------------ILAEMRRK-SIRPNAT-DFG----LLLAGF 227 (401)
Q Consensus 200 ~a~~----------------------------------------------~~~~~~~~-~~~~~~~-~~~----~ll~~~ 227 (401)
.|++ .++.+.+. ...|+.. .+. ..+..+
T Consensus 168 ~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~L 247 (765)
T PRK10049 168 PALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGAL 247 (765)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHH
Confidence 4443 33344322 1112211 111 113345
Q ss_pred HccCChHHHHHHHHHHHHcCCC-CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc---CHHHHHHHHHHHhcCCCh
Q 015726 228 YKEHKYEDVGKVLQMMEKCGIA-SGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKP---NLDTYKHLIHGFGKEGNL 303 (401)
Q Consensus 228 ~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p---~~~~~~~li~~~~~~~~~ 303 (401)
...|++++|+..|+.+.+.+.+ |+ .....+..+|...|++++|...|+++.+..... .......+..++...|++
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~ 326 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENY 326 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence 6778999999999999887532 22 122335778999999999999999987653211 134566677788899999
Q ss_pred HHHHHHHHHHHhCC-----------CCCCH---hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 015726 304 EGAKKLFASMTNGG-----------CEPDS---YCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLAS 369 (401)
Q Consensus 304 ~~a~~~~~~m~~~~-----------~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 369 (401)
++|.++++.+.+.. -.|+. ..+..+...+...|+.++|+++++++.... +.+...+..+...+..
T Consensus 327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~ 405 (765)
T PRK10049 327 PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQA 405 (765)
T ss_pred HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 99999999988652 11231 245567778889999999999999998764 5678889999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCccc
Q 015726 370 ISKVAEANELIGLMKKRFPKSGDM 393 (401)
Q Consensus 370 ~g~~~~a~~~~~~~~~~~~~~~~~ 393 (401)
.|++++|++.+++..+..|.+...
T Consensus 406 ~g~~~~A~~~l~~al~l~Pd~~~l 429 (765)
T PRK10049 406 RGWPRAAENELKKAEVLEPRNINL 429 (765)
T ss_pred cCCHHHHHHHHHHHHhhCCCChHH
Confidence 999999999999999998887543
No 18
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.82 E-value=1.8e-17 Score=145.14 Aligned_cols=340 Identities=14% Similarity=0.076 Sum_probs=242.1
Q ss_pred HHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhh-CCCCCCchhHHHHHHH
Q 015726 41 KKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKT-RPDLRQNERFHVHSIV 119 (401)
Q Consensus 41 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~li~ 119 (401)
.+.-....++..|+.+.|+..++.+... .+.....|..+..++...|+.+.|.+.|.+... .|... -+...+..
T Consensus 118 ~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~---ca~s~lgn 192 (966)
T KOG4626|consen 118 AYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLY---CARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchh---hhhcchhH
Confidence 3444557889999999999999988754 333567888899999999999998888877662 22211 12222333
Q ss_pred HHHhcCChHHH----------------------------------HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 015726 120 LYGQANMIDHA----------------------------------MQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEV 165 (401)
Q Consensus 120 ~~~~~~~~~~a----------------------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 165 (401)
..-..|++++| ++.|++..+.+ +.-...|..|...|...+.++.|
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~A 271 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRA 271 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHH
Confidence 33334444444 44444444432 11234455555555555555555
Q ss_pred HHHHHhchhhcCCCCC-HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHH
Q 015726 166 KRIFTEFPKVYGIEPN-SETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMME 244 (401)
Q Consensus 166 ~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 244 (401)
...|.+.... .|+ ...+..+...|...|+++.|+..|++..+.. +--...|+.+..++-..|++.+|.+.+.+..
T Consensus 272 vs~Y~rAl~l---rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL 347 (966)
T KOG4626|consen 272 VSCYLRALNL---RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKAL 347 (966)
T ss_pred HHHHHHHHhc---CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence 5555554322 333 3345555555666777777777777776642 2235678888888888899999999888887
Q ss_pred HcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCC-H
Q 015726 245 KCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPN-LDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPD-S 322 (401)
Q Consensus 245 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~ 322 (401)
... +......+.+...|...|.+++|.++|....+- .|. ...++.|...|.+.|++++|+..|++.++ ++|+ .
T Consensus 348 ~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fA 422 (966)
T KOG4626|consen 348 RLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFA 422 (966)
T ss_pred HhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHH
Confidence 763 335677888888999999999999999887764 444 46788899999999999999999999887 5676 4
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcccchh
Q 015726 323 YCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSGDMWNA 396 (401)
Q Consensus 323 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 396 (401)
..|+.+...|-..|+.+.|.+.+.+++..+ +.-.+.++.|...|-..|++.+|+.-+++.++..|.-+..|-.
T Consensus 423 da~~NmGnt~ke~g~v~~A~q~y~rAI~~n-Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cN 495 (966)
T KOG4626|consen 423 DALSNMGNTYKEMGDVSAAIQCYTRAIQIN-PTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCN 495 (966)
T ss_pred HHHHhcchHHHHhhhHHHHHHHHHHHHhcC-cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhH
Confidence 678899999999999999999999988764 2235678899999999999999999999999987766655543
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.81 E-value=1e-15 Score=145.50 Aligned_cols=307 Identities=12% Similarity=-0.003 Sum_probs=241.3
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 015726 77 AFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGC 156 (401)
Q Consensus 77 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 156 (401)
.+......+.+.|++++|+..|++..... ++...|..+..+|.+.|++++|++.++..++.. +.+...|..+..+|
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~---p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECK---PDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 35566778889999999999999988432 235688899999999999999999999999875 55678899999999
Q ss_pred HhcCCHHHHHHHHHhchhhcCC---------------------------CC-CHHhHHHH--------------------
Q 015726 157 ILSKNYEEVKRIFTEFPKVYGI---------------------------EP-NSETYNKV-------------------- 188 (401)
Q Consensus 157 ~~~~~~~~a~~~~~~~~~~~~~---------------------------~~-~~~~~~~l-------------------- 188 (401)
...|++++|+..|.......+. .| +...+..+
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccc
Confidence 9999999998766443211000 11 10000000
Q ss_pred ----------HHHH------HhcCChhHHHHHHHHHHhCC-CCC-CHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCC
Q 015726 189 ----------IKSF------CESGDSSSVYSILAEMRRKS-IRP-NATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIAS 250 (401)
Q Consensus 189 ----------~~~~------~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 250 (401)
+..+ ...+++++|.+.|++..+.+ ..| ....+..+...+...|++++|...+++..+.. +.
T Consensus 285 ~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~ 363 (615)
T TIGR00990 285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PR 363 (615)
T ss_pred ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CC
Confidence 0000 11257889999999998764 223 45567888888899999999999999998864 33
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 015726 251 GVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTY 330 (401)
Q Consensus 251 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 330 (401)
....|..+...+...|++++|...|++..+... .+...|..+...+...|++++|...|++.++.. +.+...+..+..
T Consensus 364 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~ 441 (615)
T TIGR00990 364 VTQSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGV 441 (615)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHH
Confidence 456788888999999999999999999988742 357889999999999999999999999999864 335667788888
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCc
Q 015726 331 FLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSG 391 (401)
Q Consensus 331 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 391 (401)
.+.+.|++++|+..+++..+.. +.+...+..+..++...|++++|++.|++..+..|.+.
T Consensus 442 ~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~ 501 (615)
T TIGR00990 442 TQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETK 501 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccc
Confidence 9999999999999999998763 55678899999999999999999999999998876543
No 20
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.79 E-value=1e-16 Score=140.51 Aligned_cols=308 Identities=13% Similarity=0.082 Sum_probs=195.5
Q ss_pred ccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHH----
Q 015726 73 LDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDA---- 148 (401)
Q Consensus 73 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---- 148 (401)
.-..+|..+...+-..|++++|+.+++.+.+.. +.....|..+..++...|+.+.|.+.|.+.++.+ |+...
T Consensus 114 q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~ 189 (966)
T KOG4626|consen 114 QGAEAYSNLANILKERGQLQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSD 189 (966)
T ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcc
Confidence 356789999999999999999999999998432 3335688999999999999999999999988753 43322
Q ss_pred -------------------------------HHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCC-HHhHHHHHHHHHhcC
Q 015726 149 -------------------------------LNALLLGCILSKNYEEVKRIFTEFPKVYGIEPN-SETYNKVIKSFCESG 196 (401)
Q Consensus 149 -------------------------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 196 (401)
|..|...+-.+|+...|+..|++..+ +.|+ ...|-.|...|-..+
T Consensus 190 lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk---ldP~f~dAYiNLGnV~ke~~ 266 (966)
T KOG4626|consen 190 LGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK---LDPNFLDAYINLGNVYKEAR 266 (966)
T ss_pred hhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc---CCCcchHHHhhHHHHHHHHh
Confidence 22222233334444445555544442 2333 234555555555555
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHH
Q 015726 197 DSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLD 276 (401)
Q Consensus 197 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 276 (401)
.+++|...|.+..... +.....+..+...|...|..|.|+..+++..+.. +.-...|+.+..++-..|++.+|.+.+.
T Consensus 267 ~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYn 344 (966)
T KOG4626|consen 267 IFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYN 344 (966)
T ss_pred cchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHH
Confidence 5555555555554431 2234445555555566666666666666666543 2224567777777777777777777777
Q ss_pred HHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 015726 277 GMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPD-SYCFFMFTYFLCQGGEYETALKVCRASMAKGWVP 355 (401)
Q Consensus 277 ~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 355 (401)
+..... .-.....+.|...|...|.++.|..+|....+- .|. ....+.|...|-+.|++++|+..+++.+.- .|
T Consensus 345 kaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P 419 (966)
T KOG4626|consen 345 KALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KP 419 (966)
T ss_pred HHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--Cc
Confidence 666652 113456666777777777777777777766653 333 345666777777777777777777776643 34
Q ss_pred C-HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcccc
Q 015726 356 H-FSTMKSLVTGLASISKVAEANELIGLMKKRFPKSGDMW 394 (401)
Q Consensus 356 ~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 394 (401)
+ ...|+.+...|-..|+...|.+-+.+.....|.-....
T Consensus 420 ~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAh 459 (966)
T KOG4626|consen 420 TFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAH 459 (966)
T ss_pred hHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHH
Confidence 3 34566677777777777777777777766655443333
No 21
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.78 E-value=1.7e-14 Score=137.76 Aligned_cols=340 Identities=13% Similarity=0.067 Sum_probs=211.2
Q ss_pred HHHHhcCCChhHHHHHhhhccCCCCCCccH-hHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhc
Q 015726 46 IARLKSESNPFRILDICCGASLAPESPLDR-MAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQA 124 (401)
Q Consensus 46 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 124 (401)
.-...+.|+++.|++.|..+.... |.+. ..+ .++..+...|+.++|+..+++.. .+...+ ......+...|...
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~-~p~n~~-~~~llalA~ly~~~ 115 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ-SSMNIS-SRGLASAARAYRNE 115 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc-cCCCCC-HHHHHHHHHHHHHc
Confidence 344556777889999998887442 2221 233 77788888899999999999987 332222 33444446688888
Q ss_pred CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHH
Q 015726 125 NMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSI 204 (401)
Q Consensus 125 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 204 (401)
|++++|+++|+++.+.. +.+...+..++..+...++.++|++.++++.+. .|+...+..++..+...++..+|++.
T Consensus 116 gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~---dp~~~~~l~layL~~~~~~~~~AL~~ 191 (822)
T PRK14574 116 KRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER---DPTVQNYMTLSYLNRATDRNYDALQA 191 (822)
T ss_pred CCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc---CcchHHHHHHHHHHHhcchHHHHHHH
Confidence 99999999999998876 456777778888889999999999999998754 56655554444444445566568888
Q ss_pred HHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHH---------------------------------------------
Q 015726 205 LAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKV--------------------------------------------- 239 (401)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~--------------------------------------------- 239 (401)
++++.+.. +-+...+..+..++.+.|-...|.++
T Consensus 192 ~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~a 270 (822)
T PRK14574 192 SSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKA 270 (822)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHH
Confidence 88887763 33444545555555444433222222
Q ss_pred ---HHHHHHc-CC-CCCchhH----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHH
Q 015726 240 ---LQMMEKC-GI-ASGVNVY----NIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLF 310 (401)
Q Consensus 240 ---~~~~~~~-~~-~~~~~~~----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 310 (401)
++.+... +. ++....| -=.+-++...|++.++++.|+.+...|.+....+-.++..+|...+.+++|..+|
T Consensus 271 la~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~ 350 (822)
T PRK14574 271 LADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPIL 350 (822)
T ss_pred HHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 1222111 01 1111111 1123445566777777777777776665444456666677777777777777777
Q ss_pred HHHHhCC-----CCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCC-----------CCCH---HHHHHHHHHHHccC
Q 015726 311 ASMTNGG-----CEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGW-----------VPHF---STMKSLVTGLASIS 371 (401)
Q Consensus 311 ~~m~~~~-----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~~---~~~~~l~~~~~~~g 371 (401)
+.+.... ..++......|..+|...+++++|..+++++.+... .|+. ..+..++..+...|
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~g 430 (822)
T PRK14574 351 SSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALN 430 (822)
T ss_pred HHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcC
Confidence 7765432 112233345667777777777777777777666210 1221 22334455566677
Q ss_pred CHHHHHHHHHHHHhcCCCCcccch
Q 015726 372 KVAEANELIGLMKKRFPKSGDMWN 395 (401)
Q Consensus 372 ~~~~a~~~~~~~~~~~~~~~~~~~ 395 (401)
+..+|++.++++....|.|...+.
T Consensus 431 dl~~Ae~~le~l~~~aP~n~~l~~ 454 (822)
T PRK14574 431 DLPTAQKKLEDLSSTAPANQNLRI 454 (822)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHH
Confidence 777777777777766666665544
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.77 E-value=2.3e-14 Score=136.80 Aligned_cols=338 Identities=11% Similarity=0.057 Sum_probs=189.7
Q ss_pred HHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHh
Q 015726 44 ATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQ 123 (401)
Q Consensus 44 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 123 (401)
..+.++...|+.++|+..++.+. .+ .+........+...+...|++++|+++|+++.... |.+...+..++..+..
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~-~p-~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d--P~n~~~l~gLa~~y~~ 148 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQ-SS-MNISSRGLASAARAYRNEKRWDQALALWQSSLKKD--PTNPDLISGMIMTQAD 148 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhc-cC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHhh
Confidence 44566667788888888888876 22 23334444444667788888888888888887432 3334566677788888
Q ss_pred cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhH---
Q 015726 124 ANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSS--- 200 (401)
Q Consensus 124 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--- 200 (401)
.++.++|++.++++... .|+...+..++..+...++..+|++.++++.+.. +-+...+..+.....+.|-...
T Consensus 149 ~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~--P~n~e~~~~~~~~l~~~~~~~~a~~ 224 (822)
T PRK14574 149 AGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA--PTSEEVLKNHLEILQRNRIVEPALR 224 (822)
T ss_pred cCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHH
Confidence 88888888888888765 4555555444444444555555888888876542 2223333333333333332222
Q ss_pred ---------------------------------------------HHHHHHHHHhC-CCCCCH-Hh----HHHHHHHHHc
Q 015726 201 ---------------------------------------------VYSILAEMRRK-SIRPNA-TD----FGLLLAGFYK 229 (401)
Q Consensus 201 ---------------------------------------------a~~~~~~~~~~-~~~~~~-~~----~~~ll~~~~~ 229 (401)
|+.-++.+... +..|.. .. ..-.+-++..
T Consensus 225 l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~ 304 (822)
T PRK14574 225 LAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLV 304 (822)
T ss_pred HHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHH
Confidence 22222222221 111111 11 1122334555
Q ss_pred cCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCcCHHHHHHHHHHHhcCCChH
Q 015726 230 EHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRG-----IKPNLDTYKHLIHGFGKEGNLE 304 (401)
Q Consensus 230 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~p~~~~~~~li~~~~~~~~~~ 304 (401)
.|++.++++.++.+...+.+....+-..+..+|...+++++|..+++.+.... ..++......|.-+|...++++
T Consensus 305 r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~ 384 (822)
T PRK14574 305 RHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLD 384 (822)
T ss_pred hhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHH
Confidence 66666666666666665544344455566666666666666666666664432 1122333455666666666666
Q ss_pred HHHHHHHHHHhCCC-----------CCC--H-hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 015726 305 GAKKLFASMTNGGC-----------EPD--S-YCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASI 370 (401)
Q Consensus 305 ~a~~~~~~m~~~~~-----------~~~--~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 370 (401)
+|..+++.+.+.-. .|| - ..+..++..+.-.|+..+|++.++++.... +-|......+...+...
T Consensus 385 ~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~R 463 (822)
T PRK14574 385 KAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLAR 463 (822)
T ss_pred HHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 66666666665210 122 1 223334455556666666666666665543 44566666666666666
Q ss_pred CCHHHHHHHHHHHHhcCCCC
Q 015726 371 SKVAEANELIGLMKKRFPKS 390 (401)
Q Consensus 371 g~~~~a~~~~~~~~~~~~~~ 390 (401)
|.+.+|++.++......|.+
T Consensus 464 g~p~~A~~~~k~a~~l~P~~ 483 (822)
T PRK14574 464 DLPRKAEQELKAVESLAPRS 483 (822)
T ss_pred CCHHHHHHHHHHHhhhCCcc
Confidence 66666666665555544444
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.75 E-value=1.1e-13 Score=135.06 Aligned_cols=306 Identities=11% Similarity=0.011 Sum_probs=227.2
Q ss_pred cHhHHHHHHHHHHhCCCchHHHHHHHHhhh-CCCCCCchhHHHHHHHHHHhcCC---hHHHHHH----------------
Q 015726 74 DRMAFSIAVSKLSQANHFNAISQLLEELKT-RPDLRQNERFHVHSIVLYGQANM---IDHAMQT---------------- 133 (401)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~---------------- 133 (401)
+......+--...+.|+.++|.++++.... .++...+......++..|.+.+. ..++..+
T Consensus 375 ~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 454 (987)
T PRK09782 375 NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQL 454 (987)
T ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhh
Confidence 444555555556788999999999998874 22222234566678888887766 3333333
Q ss_pred ------HH---HHhhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHH
Q 015726 134 ------FE---EMDKYGLRQ--SVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVY 202 (401)
Q Consensus 134 ------~~---~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 202 (401)
++ ...... ++ +...|..+..++.. ++.++|...+.+.... .|+......+...+...|++++|.
T Consensus 455 ~~~~~~~~~~~~al~~~-p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~---~Pd~~~~L~lA~al~~~Gr~eeAi 529 (987)
T PRK09782 455 PGIADNCPAIVRLLGDM-SPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR---QPDAWQHRAVAYQAYQVEDYATAL 529 (987)
T ss_pred hhhhhhHHHHHHhcccC-CCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh---CCchHHHHHHHHHHHHCCCHHHHH
Confidence 11 111111 33 67777878777776 7888899988887655 566554444455556899999999
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 015726 203 SILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRG 282 (401)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 282 (401)
..|+++... +|+...+..+..++.+.|+.++|...++...+.+ +.+...+..+.....+.|++++|...+++..+.
T Consensus 530 ~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l- 605 (987)
T PRK09782 530 AAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI- 605 (987)
T ss_pred HHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh-
Confidence 999997654 4455556677788899999999999999998864 223333333444455669999999999999886
Q ss_pred CCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 015726 283 IKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKS 362 (401)
Q Consensus 283 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 362 (401)
.|+...|..+..++.+.|++++|.+.+++..+.. +.+...+..+..++...|+.++|...+++..+.. +-+...+..
T Consensus 606 -~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~n 682 (987)
T PRK09782 606 -APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQ 682 (987)
T ss_pred -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 4578888999999999999999999999999864 3356677888889999999999999999998875 557788999
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcCCCCc
Q 015726 363 LVTGLASISKVAEANELIGLMKKRFPKSG 391 (401)
Q Consensus 363 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 391 (401)
+..++...|++++|...+++..+..|.+.
T Consensus 683 LA~al~~lGd~~eA~~~l~~Al~l~P~~a 711 (987)
T PRK09782 683 LAYVNQRLDDMAATQHYARLVIDDIDNQA 711 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCc
Confidence 99999999999999999999998877654
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.74 E-value=1.9e-13 Score=133.38 Aligned_cols=334 Identities=10% Similarity=0.025 Sum_probs=249.5
Q ss_pred HHHHHHHHHhcCCChhHHHHHhhhccC-CCCCCccHhHHHHHHHHHHhCCC---chHHHHH-------------------
Q 015726 41 KKRATIARLKSESNPFRILDICCGASL-APESPLDRMAFSIAVSKLSQANH---FNAISQL------------------- 97 (401)
Q Consensus 41 ~~~~~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~------------------- 97 (401)
.+.++.-.+.++|+.++|.++++.... +++..++...-..++..+.+.+. ..++..+
T Consensus 378 ~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 457 (987)
T PRK09782 378 RLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGI 457 (987)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhh
Confidence 444455566677889999999998865 33344455556678888888766 3333222
Q ss_pred ---HHHhh-hCCCCCC--chhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 015726 98 ---LEELK-TRPDLRQ--NERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTE 171 (401)
Q Consensus 98 ---~~~~~-~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 171 (401)
++... ..+..+. +...+..+..++.. +++++|...+.+.... .|+......+...+...|++++|...|++
T Consensus 458 ~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rk 534 (987)
T PRK09782 458 ADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQK 534 (987)
T ss_pred hhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 22222 1222334 56778888877776 8999999988887766 46655444445556789999999999998
Q ss_pred chhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC
Q 015726 172 FPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASG 251 (401)
Q Consensus 172 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 251 (401)
+... +|+...+..+...+.+.|++++|...+++..+.. +.+...+..+.......|++++|...+++..+.. |+
T Consensus 535 a~~~---~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~ 608 (987)
T PRK09782 535 ISLH---DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PS 608 (987)
T ss_pred Hhcc---CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CC
Confidence 8543 5666667777888999999999999999998764 3333344444445556799999999999999864 56
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 015726 252 VNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYF 331 (401)
Q Consensus 252 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 331 (401)
...+..+..++.+.|++++|...+++....... +...++.+...+...|++++|.+.+++..+.. +-+...+..+..+
T Consensus 609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~a 686 (987)
T PRK09782 609 ANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYV 686 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 888999999999999999999999999988432 56788888889999999999999999999863 3456788999999
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 015726 332 LCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKR 386 (401)
Q Consensus 332 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 386 (401)
+...|++++|...+++..+.. +-+..+.........+..+++.|.+-+++....
T Consensus 687 l~~lGd~~eA~~~l~~Al~l~-P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~ 740 (987)
T PRK09782 687 NQRLDDMAATQHYARLVIDDI-DNQALITPLTPEQNQQRFNFRRLHEEVGRRWTF 740 (987)
T ss_pred HHHCCCHHHHHHHHHHHHhcC-CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999764 223355556666666777777777777666543
No 25
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=2.4e-14 Score=120.52 Aligned_cols=307 Identities=16% Similarity=0.202 Sum_probs=220.3
Q ss_pred CccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHH
Q 015726 72 PLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNA 151 (401)
Q Consensus 72 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 151 (401)
|.+..+|..+|.++++--..+.|.+++++.....+ ..+..+|+.+|.+-.- ..-.+++.+|....+.||..|+|+
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~-kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~TfNa 278 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKG-KVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTFNA 278 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhh-eeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhHHH
Confidence 44677999999999999999999999999884433 3447788888866432 223788999999999999999999
Q ss_pred HHHHHHhcCCHHH----HHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhH-HHHHHHHHHh----CCCC----CCHH
Q 015726 152 LLLGCILSKNYEE----VKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSS-VYSILAEMRR----KSIR----PNAT 218 (401)
Q Consensus 152 l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~----~~~~----~~~~ 218 (401)
++.+..+.|+++. |.+++.+| ++.|+.|...+|..+|..+++.++..+ +..++.++.. ..++ .|..
T Consensus 279 lL~c~akfg~F~~ar~aalqil~Em-KeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~ 357 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAALQILGEM-KEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNK 357 (625)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHH-HHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhH
Confidence 9999999998765 56677788 677999999999999999999888754 4555555433 2222 3556
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHcC----CCCC---chhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHH
Q 015726 219 DFGLLLAGFYKEHKYEDVGKVLQMMEKCG----IASG---VNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYK 291 (401)
Q Consensus 219 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 291 (401)
.|...|..|.+..+.+.|.++..-+.... +.|+ ..-|..+..+.|+....+.....|+.|.-.-+-|+..+..
T Consensus 358 FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~ 437 (625)
T KOG4422|consen 358 FFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMI 437 (625)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHH
Confidence 77888999999999988888776554321 2222 2335667778888888999999999998887788888888
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccC-CH--------H-----HHHHH-------HHHHHH
Q 015726 292 HLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGG-EY--------E-----TALKV-------CRASMA 350 (401)
Q Consensus 292 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~--------~-----~a~~~-------~~~~~~ 350 (401)
.++++....|.++-.-+++.+++..|..-+...-.-++..+++.. .. . -|..+ -.++.+
T Consensus 438 ~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~ 517 (625)
T KOG4422|consen 438 HLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRA 517 (625)
T ss_pred HHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Confidence 999998888999888888888887775444444444444444332 10 0 01111 122333
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 015726 351 KGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKR 386 (401)
Q Consensus 351 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 386 (401)
.. ......+..+-.+.+.|+.++|.+++..+.++
T Consensus 518 ~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~ 551 (625)
T KOG4422|consen 518 QD--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRK 551 (625)
T ss_pred cc--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhc
Confidence 33 33445666666777888888888888877554
No 26
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.74 E-value=5e-14 Score=126.24 Aligned_cols=285 Identities=13% Similarity=0.089 Sum_probs=216.7
Q ss_pred CCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHH--HHHHHHHhcCCHHHH
Q 015726 88 ANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALN--ALLLGCILSKNYEEV 165 (401)
Q Consensus 88 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a 165 (401)
.|+++.|.+.+.......+.+. -.+........+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~--l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPV--VNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchH--HHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 6999999988887654433222 22333344557899999999999999875 45543332 336788899999999
Q ss_pred HHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-------HhHHHHHHHHHccCChHHHHH
Q 015726 166 KRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNA-------TDFGLLLAGFYKEHKYEDVGK 238 (401)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~ 238 (401)
.+.++++.+.. +-+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...+
T Consensus 173 l~~l~~~~~~~--P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 173 RHGVDKLLEVA--PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHhcC--CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999997653 445677888999999999999999999999987654322 133334444444555666667
Q ss_pred HHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCC
Q 015726 239 VLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGC 318 (401)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 318 (401)
+++.+.+. .+.+......+...+...|+.++|.+++++..+. .|+.... ++.+....++.+++.+..+...+..
T Consensus 251 ~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~- 324 (398)
T PRK10747 251 WWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH- 324 (398)
T ss_pred HHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-
Confidence 77766443 3457778888999999999999999999999885 4454322 3444456699999999999988763
Q ss_pred CCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 015726 319 EPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKR 386 (401)
Q Consensus 319 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 386 (401)
+-|...+..+...|.+.|++++|.+.|+.+.+. .|+...+..+..++.+.|+.++|.+++++....
T Consensus 325 P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 325 GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 345566888999999999999999999999976 689999999999999999999999999988654
No 27
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.72 E-value=6e-14 Score=126.45 Aligned_cols=292 Identities=12% Similarity=0.012 Sum_probs=212.0
Q ss_pred HhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 015726 86 SQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEV 165 (401)
Q Consensus 86 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 165 (401)
...|+++.|.+.+.........+ ...+-....++...|+++.|.+.+.+..+....+.....-.....+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~--~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEP--VLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 46799999999998876433211 3344455677788899999999999987653222223444457888899999999
Q ss_pred HHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHH-HHHHHH---HccCChHHHHHHHH
Q 015726 166 KRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFG-LLLAGF---YKEHKYEDVGKVLQ 241 (401)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~ll~~~---~~~~~~~~a~~~~~ 241 (401)
.+.++.+.+.. +-+......+...+.+.|++++|.+.+..+.+.+.. +...+. .-..++ ...+..+++.+.+.
T Consensus 173 l~~l~~l~~~~--P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 173 RHGVDKLLEMA--PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 99999997663 445667889999999999999999999999988754 333332 111211 22233333334454
Q ss_pred HHHHcCC---CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHH---HHHHHHHHhcCCChHHHHHHHHHHHh
Q 015726 242 MMEKCGI---ASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDT---YKHLIHGFGKEGNLEGAKKLFASMTN 315 (401)
Q Consensus 242 ~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~ 315 (401)
.+.+... +.+...+..+...+...|+.++|.+++++..+.. ||... ...........++.+.+.+.++...+
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 4444321 2377888889999999999999999999999873 34331 11122223345788889999988876
Q ss_pred CCCCCCH---hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 015726 316 GGCEPDS---YCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKR 386 (401)
Q Consensus 316 ~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 386 (401)
. .|+. ....++...|.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++....
T Consensus 328 ~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 328 N--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred h--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5 4443 4567889999999999999999996555455789999999999999999999999999987654
No 28
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.71 E-value=5.4e-17 Score=139.06 Aligned_cols=185 Identities=14% Similarity=0.138 Sum_probs=63.2
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcC-CCCCchhHHHHHHHHHhcCCHHHHH
Q 015726 194 ESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCG-IASGVNVYNIRIQSLCKLKRSEEAK 272 (401)
Q Consensus 194 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~ 272 (401)
..+++++|.+++....+. .++...+..++..+.+.++++++..+++.+.... .+.+...|..+...+.+.|+.++|.
T Consensus 89 ~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~ 166 (280)
T PF13429_consen 89 QDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKAL 166 (280)
T ss_dssp -------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHH
T ss_pred cccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 444444444444433222 1233333444444444444444444444443221 1233444444455555555555555
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 015726 273 ALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKG 352 (401)
Q Consensus 273 ~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 352 (401)
+.+++..+.... |......++..+...|+.+++.+++....+.. +.|+..+..+..+|...|+.++|..++++..+..
T Consensus 167 ~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 167 RDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 555555544211 24444455555555555555555554444332 2333344455555555555555555555555432
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 015726 353 WVPHFSTMKSLVTGLASISKVAEANELIGLM 383 (401)
Q Consensus 353 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 383 (401)
+.|+.+...+..++...|+.++|.++..+.
T Consensus 245 -p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 245 -PDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp -TT-HHHHHHHHHHHT---------------
T ss_pred -cccccccccccccccccccccccccccccc
Confidence 334555555555555555555555555444
No 29
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.70 E-value=2.4e-16 Score=135.07 Aligned_cols=259 Identities=13% Similarity=0.132 Sum_probs=61.4
Q ss_pred HHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 015726 82 VSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKN 161 (401)
Q Consensus 82 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 161 (401)
...+.+.|++++|.++++........+.+..++..+...+...++++.|.+.++++...+ +-+...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccccc
Confidence 444445555555555553322111112223344444444444555555555555554443 2233344444444 34455
Q ss_pred HHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCHHhHHHHHHHHHccCChHHHHHHH
Q 015726 162 YEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKS-IRPNATDFGLLLAGFYKEHKYEDVGKVL 240 (401)
Q Consensus 162 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 240 (401)
+++|.+++....+. .++...+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|++.+
T Consensus 93 ~~~A~~~~~~~~~~---~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 93 PEEALKLAEKAYER---DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccc---ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55555554443322 2333344444444555555555555555543321 2234444444445555555555555555
Q ss_pred HHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCC
Q 015726 241 QMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEP 320 (401)
Q Consensus 241 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 320 (401)
++..+.. +.+....+.++..+...|+.+++..+++...+.. ..|...+..+..+|...|+.++|..++++..+.. +.
T Consensus 170 ~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~ 246 (280)
T PF13429_consen 170 RKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PD 246 (280)
T ss_dssp HHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT
T ss_pred HHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cc
Confidence 5554442 2234444445555555555555444444444332 2233334444555555555555555555544431 22
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHH
Q 015726 321 DSYCFFMFTYFLCQGGEYETALKVCRAS 348 (401)
Q Consensus 321 ~~~~~~~li~~~~~~g~~~~a~~~~~~~ 348 (401)
|......+..++...|+.++|.++.+++
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp -HHHHHHHHHHHT---------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 4444444555555555555555554443
No 30
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.70 E-value=2.3e-13 Score=122.01 Aligned_cols=287 Identities=12% Similarity=0.070 Sum_probs=219.5
Q ss_pred CCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHH
Q 015726 52 ESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAM 131 (401)
Q Consensus 52 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 131 (401)
.|+++.|.+.+.......+. ....|.....+..+.|+++.|.+.++++........ ..........+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~--p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~-~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQ--PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQ-LPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccc--hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcch-HHHHHHHHHHHHHCCCHHHHH
Confidence 68999999888765443222 123344445566899999999999999884332111 112223367888999999999
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCH------HhHHHHHHHHHhcCChhHHHHHH
Q 015726 132 QTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNS------ETYNKVIKSFCESGDSSSVYSIL 205 (401)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~ 205 (401)
+.++++.+.. +-+......+...|.+.|++++|.+++..+.+.....++. .+|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999999887 6678889999999999999999999999997653332221 12333444444555667777777
Q ss_pred HHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 015726 206 AEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKP 285 (401)
Q Consensus 206 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p 285 (401)
+.+.+. .+.+......+...+...|+.++|.+++++..+. +++.. -.++.+....++.+++.+..+...+... -
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~~P-~ 326 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDER--LVLLIPRLKTNNPEQLEKVLRQQIKQHG-D 326 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH--HHHHHhhccCCChHHHHHHHHHHHhhCC-C
Confidence 776543 3557888899999999999999999999999884 44442 2234445566999999999999988742 2
Q ss_pred CHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 015726 286 NLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMA 350 (401)
Q Consensus 286 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 350 (401)
|...+..+.+.|.+.+++++|.+.|+...+. .|+...+..+...+.+.|+.++|.+++++...
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5677889999999999999999999999985 69999999999999999999999999998754
No 31
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.68 E-value=8.4e-13 Score=107.45 Aligned_cols=288 Identities=10% Similarity=0.087 Sum_probs=189.6
Q ss_pred hCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC------HHHHHHHHHHHHhcC
Q 015726 87 QANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQS------VDALNALLLGCILSK 160 (401)
Q Consensus 87 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~ 160 (401)
-+++.++|+++|-+|... + +....+..++...|.+.|..|.|+++.+.+.+. || ....-.|..-|...|
T Consensus 47 Ls~Q~dKAvdlF~e~l~~-d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aG 121 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQE-D-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAG 121 (389)
T ss_pred hhcCcchHHHHHHHHHhc-C-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhh
Confidence 356677777777777732 2 222556667777777888888888887777653 33 223344556677778
Q ss_pred CHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH----HhHHHHHHHHHccCChHHH
Q 015726 161 NYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNA----TDFGLLLAGFYKEHKYEDV 236 (401)
Q Consensus 161 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a 236 (401)
-++.|+++|..+.++. ..-..+...|+..|-...+|++|+++-+++.+.+-.+.. ..|.-+...+....+.+.|
T Consensus 122 l~DRAE~~f~~L~de~--efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A 199 (389)
T COG2956 122 LLDRAEDIFNQLVDEG--EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRA 199 (389)
T ss_pred hhhHHHHHHHHHhcch--hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHH
Confidence 8888888887776532 223445667777787888888888887777776544332 2344555556666777888
Q ss_pred HHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 015726 237 GKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNG 316 (401)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 316 (401)
...+.+..+.+ +..+..--.+.+.....|+++.|.+.++.+.+.+...-..+...|..+|.+.|+.++....+..+.+.
T Consensus 200 ~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 200 RELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 88888777664 23444444556777778888888888888887754444566777888888888888888888887765
Q ss_pred CCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc---cCCHHHHHHHHHHHHhc
Q 015726 317 GCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLAS---ISKVAEANELIGLMKKR 386 (401)
Q Consensus 317 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~ 386 (401)
. ++...-..+........-.+.|..++.+-... .|+...+..++..-.. .|...+...++.+|...
T Consensus 279 ~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 279 N--TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred c--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 3 44444445555555555666676666665554 5788888888776543 34556666666666543
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.67 E-value=1.3e-12 Score=119.79 Aligned_cols=337 Identities=12% Similarity=0.115 Sum_probs=259.7
Q ss_pred hHHHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHH
Q 015726 39 KEKKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSI 118 (401)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 118 (401)
.+.+..+-.++.+ |+.+.|.+++.+..+. .|.....|..+...|-..|+.+++...+-..... .|.|...|..+.
T Consensus 140 ~~ll~eAN~lfar-g~~eeA~~i~~EvIkq--dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL--~p~d~e~W~~la 214 (895)
T KOG2076|consen 140 RQLLGEANNLFAR-GDLEEAEEILMEVIKQ--DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL--NPKDYELWKRLA 214 (895)
T ss_pred HHHHHHHHHHHHh-CCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCChHHHHHHH
Confidence 4456666666666 8999999999999876 5567889999999999999999999887666532 244457899999
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHH----hHHHHHHHHHh
Q 015726 119 VLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSE----TYNKVIKSFCE 194 (401)
Q Consensus 119 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~ 194 (401)
....+.|+++.|.-.|.+.++.. +++....---...|-+.|+...|.+-|.++....+ +.|.. ....+++.+..
T Consensus 215 dls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p-~~d~er~~d~i~~~~~~~~~ 292 (895)
T KOG2076|consen 215 DLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP-PVDIERIEDLIRRVAHYFIT 292 (895)
T ss_pred HHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC-chhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999986 56666666677889999999999999999976531 12222 22345666777
Q ss_pred cCChhHHHHHHHHHHhCC-CCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcC--------------------------
Q 015726 195 SGDSSSVYSILAEMRRKS-IRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCG-------------------------- 247 (401)
Q Consensus 195 ~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------------------------- 247 (401)
.++-+.|.+.++...+.+ -..+...++.++..+.+...++.+......+....
T Consensus 293 ~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~ 372 (895)
T KOG2076|consen 293 HNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGK 372 (895)
T ss_pred hhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCC
Confidence 787899999998886632 34456678888999999999999988777665511
Q ss_pred -CCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhh
Q 015726 248 -IASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRG--IKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYC 324 (401)
Q Consensus 248 -~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 324 (401)
+.++..++ -++-++...+..+....+...+.+.. +.-+...|.-+..+|...|++.+|+.+|..+......-+...
T Consensus 373 ~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~v 451 (895)
T KOG2076|consen 373 ELSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFV 451 (895)
T ss_pred CCCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhh
Confidence 12222221 12233444455555555555566655 333567888999999999999999999999998765667889
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 015726 325 FFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMK 384 (401)
Q Consensus 325 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 384 (401)
|-.+..+|...|.+++|.+.+++.+... +.+...-..|...+.+.|+.++|.+.++.+.
T Consensus 452 w~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 452 WYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 9999999999999999999999999875 4566777888899999999999999999875
No 33
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.67 E-value=3.9e-13 Score=109.38 Aligned_cols=293 Identities=14% Similarity=0.145 Sum_probs=222.1
Q ss_pred CCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhH--HHHHHHHHHhcCChHH
Q 015726 52 ESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERF--HVHSIVLYGQANMIDH 129 (401)
Q Consensus 52 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~ 129 (401)
.+++++|.++|-++... .+-+..+.-++.+.|.+.|..+.|+.+.+.+...|+.+.+... ...+..-|...|-+|.
T Consensus 48 s~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 35689999999988764 4446677788889999999999999999999988887764433 3455677899999999
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHH---hHHHHHHHHHhcCChhHHHHHHH
Q 015726 130 AMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSE---TYNKVIKSFCESGDSSSVYSILA 206 (401)
Q Consensus 130 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~ 206 (401)
|+.+|..+.+.+ ..-......|+..|-...+|++|+++-+++.+..+-+.+.. .|.-+...+....+.+.|..++.
T Consensus 126 AE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 126 AEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 999999999866 45667788899999999999999999998865432222221 24455556666789999999999
Q ss_pred HHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC
Q 015726 207 EMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPN 286 (401)
Q Consensus 207 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~ 286 (401)
+..+.. +.....--.+.+.....|++..|.+.++.+.+.+..--..+...+..+|...|+.++....+..+.+... +
T Consensus 205 kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~--g 281 (389)
T COG2956 205 KALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT--G 281 (389)
T ss_pred HHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC--C
Confidence 988763 2234444456688899999999999999999987555567788999999999999999999999988743 3
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc---cCCHHHHHHHHHHHHHCC
Q 015726 287 LDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQ---GGEYETALKVCRASMAKG 352 (401)
Q Consensus 287 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~~ 352 (401)
...-..+-..-....-.+.|..++.+-+.. +|+...+..+|..-.. .|...+-...++.|....
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~ 348 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQ 348 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHH
Confidence 333344444444445556666666555543 7999999999987643 455677777777777653
No 34
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.66 E-value=8.7e-13 Score=118.94 Aligned_cols=292 Identities=12% Similarity=0.031 Sum_probs=210.3
Q ss_pred HhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChH
Q 015726 49 LKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMID 128 (401)
Q Consensus 49 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 128 (401)
....|+++.|.+.+.......+ -....+-....+....|+++.|.+.++.......... ..+.......+...|+++
T Consensus 94 a~~~g~~~~A~~~l~~~~~~~~--~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~-l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADHAA--EPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDN-ILVEIARTRILLAQNELH 170 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhcCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCc-hHHHHHHHHHHHHCCCHH
Confidence 3567899999999877654321 1234455556788889999999999999873321111 123344578888999999
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHH-HHHH---HHHhcCChhHHHHH
Q 015726 129 HAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYN-KVIK---SFCESGDSSSVYSI 204 (401)
Q Consensus 129 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~l~~---~~~~~~~~~~a~~~ 204 (401)
.|...++.+.+.. +.+..++..+...+...|++++|.+++..+.+. ++. +...+. .-.. .....+..++..+.
T Consensus 171 ~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~-~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~ 247 (409)
T TIGR00540 171 AARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKA-GLF-DDEEFADLEQKAEIGLLDEAMADEGIDG 247 (409)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc-CCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 9999999999986 567888999999999999999999999999655 332 322221 1111 12333333333445
Q ss_pred HHHHHhCC---CCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchh---HHHHHHHHHhcCCHHHHHHHHHHH
Q 015726 205 LAEMRRKS---IRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNV---YNIRIQSLCKLKRSEEAKALLDGM 278 (401)
Q Consensus 205 ~~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~ll~~~~~~~~~~~a~~~~~~~ 278 (401)
+..+.+.. .+.+...+..+...+...|+.++|.+++++..+.. |+... ...........++.+.+.+.++..
T Consensus 248 L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~ 325 (409)
T TIGR00540 248 LLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQ 325 (409)
T ss_pred HHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHH
Confidence 55444331 12378888899999999999999999999998864 33321 122222234457888999999888
Q ss_pred HHCCCCc-CH--HHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 015726 279 LSRGIKP-NL--DTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMA 350 (401)
Q Consensus 279 ~~~~~~p-~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 350 (401)
.+. .| |. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 326 lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 326 AKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 776 33 34 566788999999999999999999544434579999999999999999999999999998644
No 35
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.63 E-value=2.3e-12 Score=108.88 Aligned_cols=254 Identities=15% Similarity=0.189 Sum_probs=135.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHH
Q 015726 111 ERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIK 190 (401)
Q Consensus 111 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 190 (401)
..++..+|.+.++--..+.|.+++++..+...+.+..+||.+|.+-.-..+ .+++.+|..+ .+.||..|+|++++
T Consensus 207 ~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisq-km~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 207 DETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQ-KMTPNLFTFNALLS 281 (625)
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHh-hcCCchHhHHHHHH
Confidence 345666666666666666666666666555555666666666554332222 4455555433 55666666666666
Q ss_pred HHHhcCChhH----HHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHH-HHHHHHHHH----cCCCC----CchhHHH
Q 015726 191 SFCESGDSSS----VYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDV-GKVLQMMEK----CGIAS----GVNVYNI 257 (401)
Q Consensus 191 ~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a-~~~~~~~~~----~~~~~----~~~~~~~ 257 (401)
+..+.|+++. |.+++.+|.+.|+.|...+|..+|..+++.++..+. ..++..+.. +.++| +...|..
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~ 361 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS 361 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence 6666665443 445556666666666666666666666666655432 222222221 11221 2344455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC----CCcC---HHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 015726 258 RIQSLCKLKRSEEAKALLDGMLSRG----IKPN---LDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTY 330 (401)
Q Consensus 258 ll~~~~~~~~~~~a~~~~~~~~~~~----~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 330 (401)
.+..|.+..+.+.|.++-.-+.... +.|+ ..-|..+....|+....+.-...|+.|+-.-.-|+..+...+++
T Consensus 362 AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lr 441 (625)
T KOG4422|consen 362 AMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLR 441 (625)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHH
Confidence 5555556666666665554443221 1222 12233444455555556666666666665544556666666666
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 015726 331 FLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLAS 369 (401)
Q Consensus 331 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 369 (401)
+....|.++-.-++|..++..|...+.....-++..+++
T Consensus 442 A~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~ 480 (625)
T KOG4422|consen 442 ALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLAR 480 (625)
T ss_pred HHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhc
Confidence 666666666666666666665544444444444444443
No 36
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.62 E-value=1.5e-11 Score=103.24 Aligned_cols=295 Identities=12% Similarity=0.105 Sum_probs=229.7
Q ss_pred HHHHHHH--hCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 015726 80 IAVSKLS--QANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCI 157 (401)
Q Consensus 80 ~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 157 (401)
.+.++.. ..|+|.+|+++..+-.+.+..| .-.|...+.+.-..|+.+.+-.++.+..+.--.++....-.......
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e~p--~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll 164 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGEQP--VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLL 164 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCcch--HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence 3444443 3699999999998866444333 34455556777788999999999999988633566777777888899
Q ss_pred hcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-------HhHHHHHHHHHcc
Q 015726 158 LSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNA-------TDFGLLLAGFYKE 230 (401)
Q Consensus 158 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~ 230 (401)
..|+.+.|..-++++.+.. +-+.........+|.+.|++.....++.+|.+.|.-.+. .+|..+++-....
T Consensus 165 ~~~d~~aA~~~v~~ll~~~--pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~ 242 (400)
T COG3071 165 NRRDYPAARENVDQLLEMT--PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDD 242 (400)
T ss_pred hCCCchhHHHHHHHHHHhC--cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999998886542 556677889999999999999999999999999866554 4577777777777
Q ss_pred CChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHH
Q 015726 231 HKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLF 310 (401)
Q Consensus 231 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 310 (401)
+..+.-...++..... ...+...-..++.-+.++|+.++|.++.++..+++..|+ ... .-.+.+-++.+.-.+..
T Consensus 243 ~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~-~~~~l~~~d~~~l~k~~ 317 (400)
T COG3071 243 NGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCR-LIPRLRPGDPEPLIKAA 317 (400)
T ss_pred ccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHH-HHhhcCCCCchHHHHHH
Confidence 7777766677666443 344566677888889999999999999999999876655 222 23445777888777777
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 015726 311 ASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKR 386 (401)
Q Consensus 311 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 386 (401)
+.-.+.. +.++..+..+...|.+.+.+.+|...|+...+. .|+..+|..+..++.+.|+.++|.++.++..-.
T Consensus 318 e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 318 EKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 7665441 334478889999999999999999999987766 689999999999999999999999999987754
No 37
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.61 E-value=4e-13 Score=119.39 Aligned_cols=265 Identities=12% Similarity=0.010 Sum_probs=129.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCH-HHHHHHHHhchhhcCCCCCHHhHHHH
Q 015726 112 RFHVHSIVLYGQANMIDHAMQTFEEMDKYG--LRQSVDALNALLLGCILSKNY-EEVKRIFTEFPKVYGIEPNSETYNKV 188 (401)
Q Consensus 112 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~l 188 (401)
.+...+..+|...+++++|.++|+.+.+.. ..-+..+|.+.+..+-+.-.. -.|.++.+.. +-...+|.++
T Consensus 354 wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~------~~sPesWca~ 427 (638)
T KOG1126|consen 354 WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTD------PNSPESWCAL 427 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhC------CCCcHHHHHh
Confidence 445555555666666666666665554432 012344455444433211100 0112222111 2234456666
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCC-CHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCC
Q 015726 189 IKSFCESGDSSSVYSILAEMRRKSIRP-NATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKR 267 (401)
Q Consensus 189 ~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 267 (401)
.++|.-+++.+.|++.|++..+. .| ...+|+.+..-+.....+|+|...|+...... +.+-..|.-+...|.+.++
T Consensus 428 GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rhYnAwYGlG~vy~Kqek 504 (638)
T KOG1126|consen 428 GNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PRHYNAWYGLGTVYLKQEK 504 (638)
T ss_pred cchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chhhHHHHhhhhheeccch
Confidence 66666666666666666555443 22 44555555555555555666666655554431 1112223334445555666
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHH
Q 015726 268 SEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRA 347 (401)
Q Consensus 268 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 347 (401)
++.|+-.|++..+-+.. +.+....+...+.+.|+.++|++++++....+ ..|+..-...+..+...+++++|.+.+++
T Consensus 505 ~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~~il~~~~~~~eal~~LEe 582 (638)
T KOG1126|consen 505 LEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRASILFSLGRYVEALQELEE 582 (638)
T ss_pred hhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHHHHHHhhcchHHHHHHHHH
Confidence 66666666555554322 34444445555555566666666666555443 22233333334444455566666666665
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Q 015726 348 SMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFP 388 (401)
Q Consensus 348 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 388 (401)
+++. ++.+..++..+...|.+.|+.+.|+.-|.-+.+..|
T Consensus 583 Lk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 583 LKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 5543 233334455555556566666666655555555444
No 38
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.60 E-value=2.2e-11 Score=102.25 Aligned_cols=292 Identities=12% Similarity=0.062 Sum_probs=234.3
Q ss_pred cCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHH
Q 015726 51 SESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHA 130 (401)
Q Consensus 51 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 130 (401)
..|++.+|..+........+. ....|...+.+....|+.+.+-.++.+..+.++... ....-+........|+++.|
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~--p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~-l~v~ltrarlll~~~d~~aA 172 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQ--PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDT-LAVELTRARLLLNRRDYPAA 172 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcc--hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCch-HHHHHHHHHHHHhCCCchhH
Confidence 467999999998887655432 345677778888999999999999999986644444 56677778889999999999
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCH-------HhHHHHHHHHHhcCChhHHHH
Q 015726 131 MQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNS-------ETYNKVIKSFCESGDSSSVYS 203 (401)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~ 203 (401)
..-++++.+.+ +.++........+|.+.|++.....++.++.+. +.-.|. .+|..+++-....+..+.-..
T Consensus 173 ~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka-~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~ 250 (400)
T COG3071 173 RENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKA-GLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKT 250 (400)
T ss_pred HHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHc-cCCChHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence 99999999887 667888999999999999999999999999665 544443 467788887777777777777
Q ss_pred HHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 015726 204 ILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGI 283 (401)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 283 (401)
.+++.... .+-+...-..++.-+.+.|+.++|.++.++..+.+..|+ -...-.+.+-++.+.-.+..++-.+. .
T Consensus 251 ~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~-h 324 (400)
T COG3071 251 WWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQ-H 324 (400)
T ss_pred HHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHh-C
Confidence 78776544 455677777888889999999999999999998877665 12223455678888877777776655 2
Q ss_pred CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 015726 284 KPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVP 355 (401)
Q Consensus 284 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 355 (401)
+-++..+.+|...|.+.+.+.+|.+.|+...+. .|+..+|+.+..++.+.|+..+|.++.++....-.+|
T Consensus 325 ~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 325 PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 224578899999999999999999999988775 7999999999999999999999999999877543333
No 39
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.59 E-value=8.3e-13 Score=117.45 Aligned_cols=284 Identities=12% Similarity=0.040 Sum_probs=221.2
Q ss_pred ChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhh-hCCCCCCchhHHHHHHHHHHhcCChHHHHH
Q 015726 54 NPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELK-TRPDLRQNERFHVHSIVLYGQANMIDHAMQ 132 (401)
Q Consensus 54 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 132 (401)
..++|+..|...... +..+......+..+|-..+++++|..+|+.+. ..|-...+..+|.+.+-..-+ +-++.
T Consensus 334 ~~~~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls 407 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALS 407 (638)
T ss_pred HHHHHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHH
Confidence 567888888874332 44455778888899999999999999999998 455566667888887755432 22333
Q ss_pred HH-HHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 015726 133 TF-EEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEP-NSETYNKVIKSFCESGDSSSVYSILAEMRR 210 (401)
Q Consensus 133 ~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 210 (401)
++ +.+.+.. +..+.+|.++.++|.-+++.+.|++.|++..+- .| ...+|+.+.+-+.....+|.|...|+..+.
T Consensus 408 ~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl---dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~ 483 (638)
T KOG1126|consen 408 YLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL---DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG 483 (638)
T ss_pred HHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc---CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc
Confidence 33 3344433 567899999999999999999999999998744 55 678899999999999999999999998765
Q ss_pred CCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHH
Q 015726 211 KSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTY 290 (401)
Q Consensus 211 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 290 (401)
.. +.+-..|--+...|.+.++++.|+-.|+++.+.+ +.+.+....+...+-+.|+.++|++++++......+ |+..-
T Consensus 484 ~~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~ 560 (638)
T KOG1126|consen 484 VD-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCK 560 (638)
T ss_pred CC-chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhH
Confidence 31 1233345556788999999999999999999876 446666777788888999999999999999887655 55555
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 015726 291 KHLIHGFGKEGNLEGAKKLFASMTNGGCEPD-SYCFFMFTYFLCQGGEYETALKVCRASMAKG 352 (401)
Q Consensus 291 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 352 (401)
...+..+...+++++|++.++++.+. .|+ ...|..+...|-+.|+.+.|+.-|.-+.+..
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 55566777889999999999999985 555 5567888889999999999999998888664
No 40
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.58 E-value=2.8e-11 Score=111.35 Aligned_cols=339 Identities=14% Similarity=0.112 Sum_probs=257.3
Q ss_pred HHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHH
Q 015726 41 KKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVL 120 (401)
Q Consensus 41 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 120 (401)
++..+-..+.+.|+.++++..+-.+..- .|.|...|..+.....+.|.+++|.-.|.+..+.. |++...+-.-+..
T Consensus 175 ay~tL~~IyEqrGd~eK~l~~~llAAHL--~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~--p~n~~~~~ers~L 250 (895)
T KOG2076|consen 175 AYYTLGEIYEQRGDIEKALNFWLLAAHL--NPKDYELWKRLADLSEQLGNINQARYCYSRAIQAN--PSNWELIYERSSL 250 (895)
T ss_pred hHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CcchHHHHHHHHH
Confidence 5666778888999999998876554322 34466899999999999999999999999998543 4445667777888
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCCHHHHHH----HHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcC
Q 015726 121 YGQANMIDHAMQTFEEMDKYGLRQSVDALNA----LLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESG 196 (401)
Q Consensus 121 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 196 (401)
|-+.|+...|..-|.++.....+.|..-+.. .+..+...++-+.|.+.++......+-..+...+++++..+.+..
T Consensus 251 ~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~ 330 (895)
T KOG2076|consen 251 YQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNK 330 (895)
T ss_pred HHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhH
Confidence 9999999999999999998753333332333 355566777779999999888775555666778999999999999
Q ss_pred ChhHHHHHHHHHHhCCCCC---------------------------CHHhHHHHHHHHHccCChHHHHHHHHHHHHcCC-
Q 015726 197 DSSSVYSILAEMRRKSIRP---------------------------NATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGI- 248 (401)
Q Consensus 197 ~~~~a~~~~~~~~~~~~~~---------------------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~- 248 (401)
.++.+......+......+ +..++ -++-++.+.+..+....+...+.+.+.
T Consensus 331 q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~ 409 (895)
T KOG2076|consen 331 QSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVW 409 (895)
T ss_pred HHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCC
Confidence 9999999988887622222 22221 222334455555556666666666653
Q ss_pred -CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHH
Q 015726 249 -ASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFM 327 (401)
Q Consensus 249 -~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 327 (401)
.-+...|.-+..+|...|++.+|.++|..+......-+...|-.+.++|...|.+++|.+.|...+... +-+...-..
T Consensus 410 ~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~ 488 (895)
T KOG2076|consen 410 VSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARIT 488 (895)
T ss_pred hhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhh
Confidence 335677888999999999999999999999987555568899999999999999999999999999753 223445667
Q ss_pred HHHHHHccCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 015726 328 FTYFLCQGGEYETALKVCRASM--------AKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKK 385 (401)
Q Consensus 328 li~~~~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 385 (401)
|...+.+.|+.++|.+.+..+. ..++.|+..........+...|+.++=..+...|+.
T Consensus 489 Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 489 LASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVD 554 (895)
T ss_pred HHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 7788899999999999999843 335677778888888999999998886666555544
No 41
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.58 E-value=6.7e-11 Score=105.24 Aligned_cols=341 Identities=12% Similarity=0.043 Sum_probs=232.5
Q ss_pred hhHHHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHH
Q 015726 38 IKEKKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHS 117 (401)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 117 (401)
....+..+..+-+..|..+....+|..+... .|.....|-......-..|+...|..++....... +.+..++...
T Consensus 549 k~slWlra~~~ek~hgt~Esl~Allqkav~~--~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~--pnseeiwlaa 624 (913)
T KOG0495|consen 549 KKSLWLRAAMFEKSHGTRESLEALLQKAVEQ--CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN--PNSEEIWLAA 624 (913)
T ss_pred hhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC--CCcHHHHHHH
Confidence 3445666666666777667666666666544 44445566666666666777777777777766332 2346677777
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCC-HHhHHHHHHHHHhcC
Q 015726 118 IVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPN-SETYNKVIKSFCESG 196 (401)
Q Consensus 118 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 196 (401)
+..-.....++.|..+|.+.... .|+..+|.--+..---.++.++|.+++++..+. -|+ ...|-.+.+.+-+.+
T Consensus 625 vKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~---fp~f~Kl~lmlGQi~e~~~ 699 (913)
T KOG0495|consen 625 VKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS---FPDFHKLWLMLGQIEEQME 699 (913)
T ss_pred HHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh---CCchHHHHHHHhHHHHHHH
Confidence 77777777777777777776654 466666666666666667777777777777665 333 334566666677777
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHH
Q 015726 197 DSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLD 276 (401)
Q Consensus 197 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 276 (401)
+++.|.+.|..=.+. ++-....|..+.+.=-+.|.+-.|..+++...-.+ +.+...|-..|.+-.+.|+.+.|..++.
T Consensus 700 ~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lma 777 (913)
T KOG0495|consen 700 NIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMA 777 (913)
T ss_pred HHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHH
Confidence 777777777654433 34445556666666666777777777777776665 4466777777777777777777777777
Q ss_pred HHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 015726 277 GMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPH 356 (401)
Q Consensus 277 ~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 356 (401)
+..+. ++.+...|..-|....+.++-......+++ ..-|+.....+...+....++++|.+.|.+..+.+ +.+
T Consensus 778 kALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~ 850 (913)
T KOG0495|consen 778 KALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDN 850 (913)
T ss_pred HHHHh-CCccchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-Ccc
Confidence 76665 343556666666665555554444333322 34566777788888888999999999999999876 445
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcccchh
Q 015726 357 FSTMKSLVTGLASISKVAEANELIGLMKKRFPKSGDMWNA 396 (401)
Q Consensus 357 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 396 (401)
-.+|..+...+..+|.-++-.++++....-.|.....|-+
T Consensus 851 GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~a 890 (913)
T KOG0495|consen 851 GDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQA 890 (913)
T ss_pred chHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHH
Confidence 6788888899999999999999999988888887777754
No 42
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.56 E-value=2.4e-10 Score=101.75 Aligned_cols=348 Identities=12% Similarity=0.040 Sum_probs=279.8
Q ss_pred HHHHHHHHHHhcCCChhHHHHHhhhcc---CCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCC-CCchhHHH
Q 015726 40 EKKRATIARLKSESNPFRILDICCGAS---LAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDL-RQNERFHV 115 (401)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ 115 (401)
..+-.+..+-..+|+.+....+++... ...++..+...|-.-...|-..|..-.+..+......-+.- .....++.
T Consensus 441 ~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~ 520 (913)
T KOG0495|consen 441 EIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWL 520 (913)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHh
Confidence 455566666777777777777766543 33467788888888888888889988888888877722211 11245777
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhc
Q 015726 116 HSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCES 195 (401)
Q Consensus 116 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 195 (401)
.-...|.+.+.++-|..+|...++.- +-+...|......=-..|..+....+|++.... ++.....|-.....+...
T Consensus 521 ~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~--~pkae~lwlM~ake~w~a 597 (913)
T KOG0495|consen 521 DDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ--CPKAEILWLMYAKEKWKA 597 (913)
T ss_pred hhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHhc
Confidence 78888999999999999999988764 556777877777667788999999999998764 245556677777888889
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHH
Q 015726 196 GDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALL 275 (401)
Q Consensus 196 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 275 (401)
|++..|..++....+.. +-+...|..-+..-....+++.|..+|.+.... .++..+|.--+...--.++.++|.+++
T Consensus 598 gdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rll 674 (913)
T KOG0495|consen 598 GDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLL 674 (913)
T ss_pred CCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHH
Confidence 99999999999988763 447788999999999999999999999998775 567777877777777789999999999
Q ss_pred HHHHHCCCCcC-HHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 015726 276 DGMLSRGIKPN-LDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWV 354 (401)
Q Consensus 276 ~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 354 (401)
++..+. -|+ ...|..+.+.+.+.++++.|.+.|..-.+. ++-....|..+...-.+.|.+-+|..++++..-.+ +
T Consensus 675 Ee~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-P 750 (913)
T KOG0495|consen 675 EEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-P 750 (913)
T ss_pred HHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-C
Confidence 988886 445 467888888999999999999998776654 33445678888888888999999999999988876 5
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcccchhc
Q 015726 355 PHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSGDMWNAA 397 (401)
Q Consensus 355 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 397 (401)
-+...|...|+.-.+.|+.+.|..++.+.++..|.+...|..-
T Consensus 751 k~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEa 793 (913)
T KOG0495|consen 751 KNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEA 793 (913)
T ss_pred CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHH
Confidence 6888999999999999999999999999999999999998754
No 43
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=2.5e-11 Score=103.63 Aligned_cols=200 Identities=11% Similarity=0.024 Sum_probs=157.6
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHH
Q 015726 182 SETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQS 261 (401)
Q Consensus 182 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 261 (401)
..|+.++.+-|.-.++.++|...|++..+.+ +.....|+.+.+-|....+...|.+-++..++.+ +.|-..|-.+.++
T Consensus 330 ~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQa 407 (559)
T KOG1155|consen 330 PETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQA 407 (559)
T ss_pred ccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHH
Confidence 3456667777778888899999999988764 3456778888888999999999999999998875 5578889999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHH
Q 015726 262 LCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETA 341 (401)
Q Consensus 262 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 341 (401)
|.-.+...-|+-.|++..... +-|...|.+|..+|.+.++.++|.+.|......| ..+...+..+.+.|-+.++.++|
T Consensus 408 Yeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eA 485 (559)
T KOG1155|consen 408 YEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEA 485 (559)
T ss_pred HHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHH
Confidence 999999999999999888763 3367899999999999999999999999988776 44667889999999999999999
Q ss_pred HHHHHHHHHC----CC-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 015726 342 LKVCRASMAK----GW-VP-HFSTMKSLVTGLASISKVAEANELIGLMKK 385 (401)
Q Consensus 342 ~~~~~~~~~~----~~-~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 385 (401)
.+.+++.++. |. .| .......|..-+.+.+++++|..+......
T Consensus 486 a~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 486 AQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 9988876653 32 22 223334466667778888887776655543
No 44
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=1.5e-10 Score=98.99 Aligned_cols=259 Identities=12% Similarity=0.103 Sum_probs=195.9
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCC-CCHHhHHHHHHHHHhcCCh
Q 015726 120 LYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIE-PNSETYNKVIKSFCESGDS 198 (401)
Q Consensus 120 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~ 198 (401)
++....+.+++.+-.+.....|++.+...-+-...+.....++++|+.+|+++.+..... -|..+|..++-. +..+
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~~- 312 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KNDK- 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--Hhhh-
Confidence 344455666777777777777766555555555555666778888888888886642111 134455554432 2221
Q ss_pred hHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 015726 199 SSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGM 278 (401)
Q Consensus 199 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 278 (401)
..+.++-+-...--+--+.|...+.+-|.-.++.++|...|+...+.+ +.....|+.+..-|...++...|..-++..
T Consensus 313 -skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 313 -SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred -HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 112222211111113345677777888888899999999999999986 446788999999999999999999999999
Q ss_pred HHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH
Q 015726 279 LSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFS 358 (401)
Q Consensus 279 ~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 358 (401)
.+-. +-|-..|..|.++|.-.+.+.-|+-+|++..+.. +.|...|..|..+|.+.++.++|++.|.+....| ..+..
T Consensus 391 vdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~ 467 (559)
T KOG1155|consen 391 VDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGS 467 (559)
T ss_pred HhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchH
Confidence 9875 3488999999999999999999999999999863 4478899999999999999999999999999887 44668
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 015726 359 TMKSLVTGLASISKVAEANELIGLMKKR 386 (401)
Q Consensus 359 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 386 (401)
.+..|.+.|-+.++.++|...+++.++.
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKYVEV 495 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 8999999999999999999999988774
No 45
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.52 E-value=3.4e-11 Score=111.63 Aligned_cols=328 Identities=13% Similarity=0.076 Sum_probs=233.7
Q ss_pred hhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhh----hCCCCCCchhHHHHHHHHHHhcCChHHH
Q 015726 55 PFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELK----TRPDLRQNERFHVHSIVLYGQANMIDHA 130 (401)
Q Consensus 55 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~li~~~~~~~~~~~a 130 (401)
.+.|..++...... .+.|...|-.+...+-...- ..++..|.... ......| ..+.+.+...+...|++..|
T Consensus 396 ~d~a~~~l~K~~~~--~~~d~~a~l~laql~e~~d~-~~sL~~~~~A~d~L~~~~~~ip-~E~LNNvaslhf~~g~~~~A 471 (1018)
T KOG2002|consen 396 RDKASNVLGKVLEQ--TPVDSEAWLELAQLLEQTDP-WASLDAYGNALDILESKGKQIP-PEVLNNVASLHFRLGNIEKA 471 (1018)
T ss_pred HHHHHHHHHHHHhc--ccccHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHcCCCCC-HHHHHhHHHHHHHhcChHHH
Confidence 35666666665544 34577777777666654443 33366665544 2233333 67888888888899999999
Q ss_pred HHHHHHHhhC---CCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHh-HHHHHHHHHhcCChhH
Q 015726 131 MQTFEEMDKY---GLRQSV------DALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSET-YNKVIKSFCESGDSSS 200 (401)
Q Consensus 131 ~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~ 200 (401)
...|...... ...++. .+-..+..++-..++.+.|.+.|..+.+. .|+-+. |--++......+...+
T Consensus 472 ~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke---hp~YId~ylRl~~ma~~k~~~~e 548 (1018)
T KOG2002|consen 472 LEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE---HPGYIDAYLRLGCMARDKNNLYE 548 (1018)
T ss_pred HHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH---CchhHHHHHHhhHHHHhccCcHH
Confidence 9988887654 112222 12333555556667888999999988876 455433 3333333334567888
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcC-CCCCchhHHHHHHHHHh------------cCC
Q 015726 201 VYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCG-IASGVNVYNIRIQSLCK------------LKR 267 (401)
Q Consensus 201 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~------------~~~ 267 (401)
|...+....... ..+...++.+...+.+..++..|.+-|....+.- ..+|+.+.-.|...|.+ .+.
T Consensus 549 a~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~ 627 (1018)
T KOG2002|consen 549 ASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKH 627 (1018)
T ss_pred HHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHH
Confidence 888888887653 4466677777778888888888888776665432 22455544445454432 245
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHH
Q 015726 268 SEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRA 347 (401)
Q Consensus 268 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 347 (401)
.++|+.+|.++.+...+ |...-|-+.-.++..|++..|..+|.+..+.. .-...+|..+..+|...|++..|+++|+.
T Consensus 628 ~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~ 705 (1018)
T KOG2002|consen 628 QEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYEN 705 (1018)
T ss_pred HHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHH
Confidence 77899999999887543 77777888888899999999999999999875 23456888999999999999999999998
Q ss_pred HHHC-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcc
Q 015726 348 SMAK-GWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSGD 392 (401)
Q Consensus 348 ~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 392 (401)
..+. .-..++.+...|.+++.+.|.+.+|.+.+...+...|.|..
T Consensus 706 ~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~ 751 (1018)
T KOG2002|consen 706 CLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTS 751 (1018)
T ss_pred HHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccch
Confidence 7665 44568889999999999999999999999999988887754
No 46
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.52 E-value=1.4e-11 Score=104.97 Aligned_cols=197 Identities=12% Similarity=0.052 Sum_probs=152.2
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHH
Q 015726 195 SGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKAL 274 (401)
Q Consensus 195 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 274 (401)
.|++++|.+.|.+.....-.-....|+. .-.+-..|+.++|+..|-++... +..+..+...+...|....+...|+++
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 5677888888888776532222223332 23456778899999888877554 234667777888888888999999998
Q ss_pred HHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 015726 275 LDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWV 354 (401)
Q Consensus 275 ~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 354 (401)
+.+.... ++.|+.....|...|-+.|+-..|.+.+-+--+- ++-|..+...|...|....-+++++.+|++.. -+.
T Consensus 581 ~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa--liq 656 (840)
T KOG2003|consen 581 LMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQ 656 (840)
T ss_pred HHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcC
Confidence 8777655 4557888999999999999999999887654433 45678888888889999999999999999765 357
Q ss_pred CCHHHHHHHHHHH-HccCCHHHHHHHHHHHHhcCCCCcccchhc
Q 015726 355 PHFSTMKSLVTGL-ASISKVAEANELIGLMKKRFPKSGDMWNAA 397 (401)
Q Consensus 355 ~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 397 (401)
|+..-|..++..| .+.|++.+|.+++++..+++|.|......|
T Consensus 657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkfl 700 (840)
T KOG2003|consen 657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFL 700 (840)
T ss_pred ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHH
Confidence 9999999888766 568999999999999999999998766554
No 47
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.51 E-value=3.3e-11 Score=100.51 Aligned_cols=200 Identities=12% Similarity=0.078 Sum_probs=124.8
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHH
Q 015726 183 ETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSL 262 (401)
Q Consensus 183 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 262 (401)
..+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 345555556666666666666666655432 2234455555666666666666666666665543 22344555566666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCC-cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHH
Q 015726 263 CKLKRSEEAKALLDGMLSRGIK-PNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETA 341 (401)
Q Consensus 263 ~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 341 (401)
...|++++|.+.+++....... .....+..+...+...|++++|.+.+.+..+.. +.+...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHH
Confidence 6667777777777666654211 123455556666777777777777777776643 22345666777777777888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 015726 342 LKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKR 386 (401)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 386 (401)
...+++..+. .+.+...+..+...+...|+.++|..+.+.+.+.
T Consensus 189 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 189 RAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 8777777665 2445566666777777778888887777776554
No 48
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.51 E-value=9.8e-12 Score=101.52 Aligned_cols=238 Identities=11% Similarity=0.057 Sum_probs=196.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHH
Q 015726 145 SVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLL 224 (401)
Q Consensus 145 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 224 (401)
|..--+-+..+|.+.|.+.+|++.++.-.++ .|-+.||-.|-+.|.+..++..|+.+|.+-.+. ++-|+....-+.
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q---~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~A 297 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ---FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQA 297 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc---CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhH
Confidence 3333456788999999999999999988776 788889999999999999999999999988765 344444455667
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChH
Q 015726 225 AGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLE 304 (401)
Q Consensus 225 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~ 304 (401)
+.+-..++.+++.++++...+.. +.++.....+...|.-.++++.|.++++++.+.|+. +...|+.+.-+|.-.+.++
T Consensus 298 Ri~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D 375 (478)
T KOG1129|consen 298 RIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQID 375 (478)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchh
Confidence 78888899999999999998864 446666777778888899999999999999999976 7888888888888999999
Q ss_pred HHHHHHHHHHhCCCCCC--HhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 015726 305 GAKKLFASMTNGGCEPD--SYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGL 382 (401)
Q Consensus 305 ~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 382 (401)
-++.-|.+....--.|+ ...|-.+.......|++..|.+.|+-....+ ..+...++.|.-.-.+.|++++|..+++.
T Consensus 376 ~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~ 454 (478)
T KOG1129|consen 376 LVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNA 454 (478)
T ss_pred hhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence 99999998886543444 3467777777788999999999999888775 45678899888888899999999999999
Q ss_pred HHhcCCC
Q 015726 383 MKKRFPK 389 (401)
Q Consensus 383 ~~~~~~~ 389 (401)
.....|.
T Consensus 455 A~s~~P~ 461 (478)
T KOG1129|consen 455 AKSVMPD 461 (478)
T ss_pred hhhhCcc
Confidence 8877654
No 49
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.51 E-value=3.4e-11 Score=100.40 Aligned_cols=196 Identities=12% Similarity=0.066 Sum_probs=85.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHH
Q 015726 114 HVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFC 193 (401)
Q Consensus 114 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 193 (401)
+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+.
T Consensus 34 ~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 34 RVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN--PNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHH
Confidence 3333444444444444444444443332 2223334444444444444444444444443221 222233344444444
Q ss_pred hcCChhHHHHHHHHHHhCCC-CCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHH
Q 015726 194 ESGDSSSVYSILAEMRRKSI-RPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAK 272 (401)
Q Consensus 194 ~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 272 (401)
..|++++|.+.+++...... ......+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHH
Confidence 44444444444444433211 1122233334444455555555555555544432 122334444555555555555555
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 015726 273 ALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMT 314 (401)
Q Consensus 273 ~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 314 (401)
..+++..+. ...+...+..+...+...|+.++|..+.+.+.
T Consensus 190 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 190 AYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 555555444 12233444444455555555555555554443
No 50
>PRK12370 invasion protein regulator; Provisional
Probab=99.49 E-value=1.6e-10 Score=108.38 Aligned_cols=250 Identities=12% Similarity=0.024 Sum_probs=159.9
Q ss_pred CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH---------hcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhc
Q 015726 125 NMIDHAMQTFEEMDKYGLRQSVDALNALLLGCI---------LSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCES 195 (401)
Q Consensus 125 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 195 (401)
+.+++|.+.|++..+.. +.+...|..+..++. ..+++++|...+++..+.. +-+..++..+...+...
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld--P~~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD--HNNPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHc
Confidence 34678888888887764 334555655554443 2244778888888876542 34566677777778888
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHH
Q 015726 196 GDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALL 275 (401)
Q Consensus 196 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 275 (401)
|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.+.. +...+..++..+...|++++|...+
T Consensus 352 g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 352 SEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred cCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHH
Confidence 88888888888887763 335666777778888888888888888888776422 2223334444566678888888888
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHccCCHHHHHHHHHHHHHCC-C
Q 015726 276 DGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPD-SYCFFMFTYFLCQGGEYETALKVCRASMAKG-W 353 (401)
Q Consensus 276 ~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~ 353 (401)
++..+....-+...+..+..++...|+.++|.+.+.++... .|+ ....+.+...|...| ++|...++++.+.. -
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~ 505 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQR 505 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhH
Confidence 88776532223455666777777888888888888876654 333 333444555566666 47777666665541 1
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 015726 354 VPHFSTMKSLVTGLASISKVAEANELIGLMKKR 386 (401)
Q Consensus 354 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 386 (401)
.+....+ +...|.-.|+.+.+... +++.+.
T Consensus 506 ~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 506 IDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred hhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 2222222 33344445666666554 666554
No 51
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.46 E-value=6.1e-10 Score=101.21 Aligned_cols=294 Identities=15% Similarity=0.128 Sum_probs=204.9
Q ss_pred HHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh--
Q 015726 81 AVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCIL-- 158 (401)
Q Consensus 81 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 158 (401)
....+...|++++|++.++.-. ..+.....+.......+.+.|+.++|..+|..+++.+ +.+..-|..+..+..-
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~--~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNE--KQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhh--hhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhc
Confidence 4456688899999999987754 3445546778888888999999999999999999885 3344444444444422
Q ss_pred ---cCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCCh-hHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChH
Q 015726 159 ---SKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDS-SSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYE 234 (401)
Q Consensus 159 ---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 234 (401)
..+.+...++|+++... -|.......+.-.+.....+ ..+..++..+...|++ .+|..+-..|....+.+
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~---yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEK---YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAA 160 (517)
T ss_pred ccccccHHHHHHHHHHHHHh---CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHH
Confidence 23577888888888654 34444333333222222233 3455666777777765 34555656666555555
Q ss_pred HHHHHHHHHHHc----C----------CCCCc--hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHH
Q 015726 235 DVGKVLQMMEKC----G----------IASGV--NVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPN-LDTYKHLIHGF 297 (401)
Q Consensus 235 ~a~~~~~~~~~~----~----------~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~ 297 (401)
-..+++...... + -+|+. .++..+.+.|...|++++|..++++..+. .|+ +..|..-.+.+
T Consensus 161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~Karil 238 (517)
T PF12569_consen 161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARIL 238 (517)
T ss_pred HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH
Confidence 555555554322 1 12333 24466678888999999999999999887 455 67788888999
Q ss_pred hcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH--------HHHHHHHHc
Q 015726 298 GKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTM--------KSLVTGLAS 369 (401)
Q Consensus 298 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--------~~l~~~~~~ 369 (401)
-+.|++.+|.+.++..++.+ .-|...-+..+..+.+.|++++|.+++......+..|..... .....+|.+
T Consensus 239 Kh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r 317 (517)
T PF12569_consen 239 KHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLR 317 (517)
T ss_pred HHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999865 346666677788889999999999999988777654433222 445678899
Q ss_pred cCCHHHHHHHHHHHHhc
Q 015726 370 ISKVAEANELIGLMKKR 386 (401)
Q Consensus 370 ~g~~~~a~~~~~~~~~~ 386 (401)
.|++..|++.|..+.+.
T Consensus 318 ~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 318 QGDYGLALKRFHAVLKH 334 (517)
T ss_pred HhhHHHHHHHHHHHHHH
Confidence 99999999988887766
No 52
>PRK12370 invasion protein regulator; Provisional
Probab=99.45 E-value=9.7e-11 Score=109.77 Aligned_cols=217 Identities=12% Similarity=0.063 Sum_probs=131.2
Q ss_pred CCHHHHHHHHHhchhhcCCCCC-HHhHHHHHHHHH---------hcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc
Q 015726 160 KNYEEVKRIFTEFPKVYGIEPN-SETYNKVIKSFC---------ESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYK 229 (401)
Q Consensus 160 ~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 229 (401)
++.++|.+.|++..+. .|+ ...|..+..++. ..+++++|...+++..+.. +-+...+..+...+..
T Consensus 275 ~~~~~A~~~~~~Al~l---dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~ 350 (553)
T PRK12370 275 YSLQQALKLLTQCVNM---SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTI 350 (553)
T ss_pred HHHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 3567777777777643 443 334444444333 1234677777777776653 3355666666667777
Q ss_pred cCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHH
Q 015726 230 EHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKL 309 (401)
Q Consensus 230 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~ 309 (401)
.|++++|...+++..+.+ +.+...+..+..++...|++++|...+++..+.... +...+..++..+...|++++|.+.
T Consensus 351 ~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 351 HSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred ccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHH
Confidence 777777777777777764 334556666777777777777777777777776432 222233334345556777777777
Q ss_pred HHHHHhCCCCC-CHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 015726 310 FASMTNGGCEP-DSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKR 386 (401)
Q Consensus 310 ~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 386 (401)
++++.+.. .| +...+..+..++...|+.++|...+.++.... +.+....+.+...|...| ++|...++.+.+.
T Consensus 429 ~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 429 GDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 77766543 23 33345566666777777777777777665442 222333444555556666 3666666665543
No 53
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.45 E-value=1.4e-10 Score=99.02 Aligned_cols=276 Identities=11% Similarity=0.055 Sum_probs=206.8
Q ss_pred HHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHH-h-cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 015726 84 KLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYG-Q-ANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKN 161 (401)
Q Consensus 84 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~-~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 161 (401)
.+.+.|+++.|+++++.+........ ...-+.+-..+. + ..++..|.++-+...... .-+......-.+.....|+
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~-saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTA-SAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhh-HHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCc
Confidence 46789999999999988874443333 223333333332 2 346788888877776543 3344444333344456789
Q ss_pred HHHHHHHHHhchhhcCCCCCHHhHH---HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHH
Q 015726 162 YEEVKRIFTEFPKVYGIEPNSETYN---KVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGK 238 (401)
Q Consensus 162 ~~~a~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 238 (401)
+++|.+.|++... .|...-. .+.-.+-..|++++|++.|-++... +..+..+...+.+.|-...+...|++
T Consensus 506 ~dka~~~ykeal~-----ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie 579 (840)
T KOG2003|consen 506 LDKAAEFYKEALN-----NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIE 579 (840)
T ss_pred HHHHHHHHHHHHc-----CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHH
Confidence 9999999998863 2333222 2333467789999999999888654 34467788888899999999999999
Q ss_pred HHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCC
Q 015726 239 VLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGC 318 (401)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 318 (401)
++.+.... ++.|..+.+-+...|-+.|+-..|.+..-+-.+- ++-+..+...|...|....-++++..+|++..- +
T Consensus 580 ~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--i 655 (840)
T KOG2003|consen 580 LLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--I 655 (840)
T ss_pred HHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--c
Confidence 99887665 5678889999999999999999998877655443 455788888899999999999999999998765 5
Q ss_pred CCCHhhHHHHHHHH-HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 015726 319 EPDSYCFFMFTYFL-CQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISK 372 (401)
Q Consensus 319 ~~~~~~~~~li~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 372 (401)
.|+..-|..++..| .+.|++++|..+++....+ ++.|...+..|++.+...|-
T Consensus 656 qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 656 QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 89999999888665 5789999999999987764 67899999999999887764
No 54
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.45 E-value=8.9e-10 Score=102.48 Aligned_cols=334 Identities=13% Similarity=0.050 Sum_probs=221.0
Q ss_pred ChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCC-CCchhHHHHHHHHHHhcCChHHHHH
Q 015726 54 NPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDL-RQNERFHVHSIVLYGQANMIDHAMQ 132 (401)
Q Consensus 54 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~ 132 (401)
....++.++..+.... +.++.+.+.+...+.-.|+++.++.+...+...... +.-...|-.+.++|-..|++++|..
T Consensus 251 s~~~~~~ll~~ay~~n--~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~ 328 (1018)
T KOG2002|consen 251 SYKKGVQLLQRAYKEN--NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFK 328 (1018)
T ss_pred HHHHHHHHHHHHHhhc--CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 4455666666554432 235567777888888888888888888887733211 1113346678888888888888888
Q ss_pred HHHHHhhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcC----ChhHHHHHHH
Q 015726 133 TFEEMDKYGLRQS--VDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESG----DSSSVYSILA 206 (401)
Q Consensus 133 ~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~ 206 (401)
.|.+..+.. ++ ...+.-+...+++.|+.+.+...|+.+.+.. +-+..+..++...|...+ ..+.|..++.
T Consensus 329 yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~--p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~ 404 (1018)
T KOG2002|consen 329 YYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL--PNNYETMKILGCLYAHSAKKQEKRDKASNVLG 404 (1018)
T ss_pred HHHHHHccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHhC--cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHH
Confidence 888877653 33 3334456778888888888888888887653 444556666666666654 4566777777
Q ss_pred HHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHH----HHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHC-
Q 015726 207 EMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMM----EKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSR- 281 (401)
Q Consensus 207 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~- 281 (401)
+.... .+.|...|-.+...+-...-+.. +..+..+ ...+..+.....|.+.......|+++.|...|+.....
T Consensus 405 K~~~~-~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~ 482 (1018)
T KOG2002|consen 405 KVLEQ-TPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKL 482 (1018)
T ss_pred HHHhc-ccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhh
Confidence 76655 35567777777776665544333 5555443 34444566778888888888889999998888877654
Q ss_pred --CCCcCH------HHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 015726 282 --GIKPNL------DTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDS-YCFFMFTYFLCQGGEYETALKVCRASMAKG 352 (401)
Q Consensus 282 --~~~p~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 352 (401)
...+|. .+-..+...+-..++.+.|.+.|..+.+. .|+. ..|..+.......+...+|...+......+
T Consensus 483 ~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d 560 (1018)
T KOG2002|consen 483 LEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID 560 (1018)
T ss_pred hhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc
Confidence 112222 23334556666778888899999888875 3543 334445434445577888888888877654
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcccchhcC
Q 015726 353 WVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSGDMWNAAL 398 (401)
Q Consensus 353 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ll 398 (401)
..++..+..+...+.+...+..|.+-|+.+.+.-.....+|..+=
T Consensus 561 -~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Yslia 605 (1018)
T KOG2002|consen 561 -SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIA 605 (1018)
T ss_pred -cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHH
Confidence 456666766777888888888888877777666333345555443
No 55
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.42 E-value=5.7e-11 Score=97.13 Aligned_cols=233 Identities=11% Similarity=0.031 Sum_probs=197.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhH-HHHH
Q 015726 111 ERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETY-NKVI 189 (401)
Q Consensus 111 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~ 189 (401)
...-+.+..+|.+.|.+.+|.+-|+.-++. .|-+.||..|-..|.+..+++.|+.++.+-.+. .|-.+|+ .-+.
T Consensus 223 wwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~---fP~~VT~l~g~A 297 (478)
T KOG1129|consen 223 WWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS---FPFDVTYLLGQA 297 (478)
T ss_pred HHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc---CCchhhhhhhhH
Confidence 445577889999999999999999998876 678888999999999999999999999998865 4555554 5577
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHH
Q 015726 190 KSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSE 269 (401)
Q Consensus 190 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 269 (401)
..+-..++.++|.++|+...+.. +.+......+...|.-.++++.|+..++.+.+.|+. +...|+.+.-+|...++++
T Consensus 298 Ri~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D 375 (478)
T KOG1129|consen 298 RIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQID 375 (478)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchh
Confidence 78888899999999999998763 557777888888899999999999999999999965 6788888988999999999
Q ss_pred HHHHHHHHHHHCCCCcC--HHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHH
Q 015726 270 EAKALLDGMLSRGIKPN--LDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRA 347 (401)
Q Consensus 270 ~a~~~~~~~~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 347 (401)
-++.-|.+....--.|+ ...|..+.......|++..|.+.|+-.+..+ ..+...++.|.-.-.+.|++++|..++..
T Consensus 376 ~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~ 454 (478)
T KOG1129|consen 376 LVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNA 454 (478)
T ss_pred hhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence 99999999887644444 3567778888889999999999999988764 44567899998888999999999999998
Q ss_pred HHHC
Q 015726 348 SMAK 351 (401)
Q Consensus 348 ~~~~ 351 (401)
....
T Consensus 455 A~s~ 458 (478)
T KOG1129|consen 455 AKSV 458 (478)
T ss_pred hhhh
Confidence 7755
No 56
>PF13041 PPR_2: PPR repeat family
Probab=99.40 E-value=1.2e-12 Score=79.35 Aligned_cols=49 Identities=43% Similarity=0.617 Sum_probs=22.9
Q ss_pred CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHh
Q 015726 250 SGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFG 298 (401)
Q Consensus 250 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 298 (401)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 3444444444444444444444444444444444444444444444443
No 57
>PF13041 PPR_2: PPR repeat family
Probab=99.39 E-value=1.2e-12 Score=79.39 Aligned_cols=50 Identities=42% Similarity=0.771 Sum_probs=35.8
Q ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc
Q 015726 285 PNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQ 334 (401)
Q Consensus 285 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 334 (401)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56677777777777777777777777777777777777777777776653
No 58
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.36 E-value=5.1e-08 Score=84.17 Aligned_cols=200 Identities=11% Similarity=0.096 Sum_probs=122.0
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH-------hHHHHHHHH---HccCChHHHHHHHHHHHHcCCCCCc
Q 015726 183 ETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNAT-------DFGLLLAGF---YKEHKYEDVGKVLQMMEKCGIASGV 252 (401)
Q Consensus 183 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~~~~~ 252 (401)
.+|-..+..-...|+.+...++|++.... ++|-.. .|..+=-++ ....+.+.+.++++...+. ++...
T Consensus 323 DsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkk 400 (677)
T KOG1915|consen 323 DSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKK 400 (677)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCccc
Confidence 34444444444455555566666555543 333111 111110111 1334555556666655553 33344
Q ss_pred hhHHHHHHHH----HhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHH
Q 015726 253 NVYNIRIQSL----CKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMF 328 (401)
Q Consensus 253 ~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 328 (401)
.||.-+=-.| .++.++..|.+++.... |.-|-..+|...|..=.+.++++.+..+|++.++.+ +-|..+|...
T Consensus 401 FtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~ky 477 (677)
T KOG1915|consen 401 FTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKY 477 (677)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHH
Confidence 4444332222 34566777777776554 346677777777777778888888888888888764 3456677777
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 015726 329 TYFLCQGGEYETALKVCRASMAKG-WVPHFSTMKSLVTGLASISKVAEANELIGLMKKRF 387 (401)
Q Consensus 329 i~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 387 (401)
...=...|+.+.|..+|.-+++.. +......|.+.|+--...|.++.|..+++.+++..
T Consensus 478 aElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 478 AELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 777778888888888888777653 22334556666666677888999999988888763
No 59
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.36 E-value=5e-09 Score=95.35 Aligned_cols=297 Identities=13% Similarity=0.106 Sum_probs=207.5
Q ss_pred HHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHH
Q 015726 42 KRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLY 121 (401)
Q Consensus 42 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 121 (401)
+.--.+++...|++++|++.+...... +......+......+.+.|+.++|..+|..+...+ |.|...|..+..+.
T Consensus 7 lLY~~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 7 LLYKNSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHH
Confidence 334457889999999999999876443 55566778888999999999999999999999543 55567777777776
Q ss_pred Hhc-----CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHhchhhcCCCCCHHhHHHHHHHHHhc
Q 015726 122 GQA-----NMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYE-EVKRIFTEFPKVYGIEPNSETYNKVIKSFCES 195 (401)
Q Consensus 122 ~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 195 (401)
.-. ...+...++|+++.+.- |.......+.-.+..-..+. .+...+..+.+. |+| .+|+.+-..|...
T Consensus 83 g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~K-gvP---slF~~lk~Ly~d~ 156 (517)
T PF12569_consen 83 GLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRK-GVP---SLFSNLKPLYKDP 156 (517)
T ss_pred hhhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhc-CCc---hHHHHHHHHHcCh
Confidence 332 35778888999887653 43333332322222212232 344444444433 443 2466666666655
Q ss_pred CChhHHHHHHHHHHhC----C----------CCCCH--HhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHH
Q 015726 196 GDSSSVYSILAEMRRK----S----------IRPNA--TDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRI 259 (401)
Q Consensus 196 ~~~~~a~~~~~~~~~~----~----------~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 259 (401)
...+-..+++...... + -+|+. .++..+...|-..|++++|++.+++.++.. +..+..|..-.
T Consensus 157 ~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~Ka 235 (517)
T PF12569_consen 157 EKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKA 235 (517)
T ss_pred hHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 5555555555554332 1 12333 244566778889999999999999999974 33467888889
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhH--------HHHHHH
Q 015726 260 QSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCF--------FMFTYF 331 (401)
Q Consensus 260 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~--------~~li~~ 331 (401)
..+-+.|++.+|.+.++........ |...-+..+..+.++|++++|.+++....+.+..|-...+ .....+
T Consensus 236 rilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a 314 (517)
T PF12569_consen 236 RILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEA 314 (517)
T ss_pred HHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888543 7777788888999999999999999999877654432222 334577
Q ss_pred HHccCCHHHHHHHHHHHHH
Q 015726 332 LCQGGEYETALKVCRASMA 350 (401)
Q Consensus 332 ~~~~g~~~~a~~~~~~~~~ 350 (401)
|.+.|++..|++.|....+
T Consensus 315 ~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 315 YLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 8899999888887765544
No 60
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=6.2e-09 Score=88.12 Aligned_cols=301 Identities=12% Similarity=0.006 Sum_probs=219.4
Q ss_pred HHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHH
Q 015726 84 KLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYE 163 (401)
Q Consensus 84 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 163 (401)
+.+..++-..|.+++--+.....++.|......+...+...|+.++|...|++....+ +-+........-.+.+.|+.+
T Consensus 205 Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e 283 (564)
T KOG1174|consen 205 AQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCE 283 (564)
T ss_pred HHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHh
Confidence 3344566666666665555566778888889999999999999999999999887543 222222233334456778888
Q ss_pred HHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHH
Q 015726 164 EVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMM 243 (401)
Q Consensus 164 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 243 (401)
....+...+.... ......|..-.......+++..|+.+-++.++.. +.+...+-.-...+...|+.++|.-.|+..
T Consensus 284 ~~~~L~~~Lf~~~--~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~A 360 (564)
T KOG1174|consen 284 QDSALMDYLFAKV--KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTA 360 (564)
T ss_pred hHHHHHHHHHhhh--hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHH
Confidence 8777776664321 2333445555555667788999999988877653 335556666667888999999999999988
Q ss_pred HHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH-HHHh-cCCChHHHHHHHHHHHhCCCCCC
Q 015726 244 EKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLI-HGFG-KEGNLEGAKKLFASMTNGGCEPD 321 (401)
Q Consensus 244 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li-~~~~-~~~~~~~a~~~~~~m~~~~~~~~ 321 (401)
+... +-+...|.-++.+|...|++.+|.-.-+...+. +..+..+.+.+. ..|. ...--++|.++++...+. .|+
T Consensus 361 q~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~ 436 (564)
T KOG1174|consen 361 QMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPI 436 (564)
T ss_pred Hhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCc
Confidence 8763 457789999999999999999988777666554 233455555442 2222 233457888888887764 465
Q ss_pred -HhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcccc
Q 015726 322 -SYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSGDMW 394 (401)
Q Consensus 322 -~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 394 (401)
....+.+...|...|..+.++.++++.... .||....+.|.+.+...+.+.+|.+.|.......|.|..+.
T Consensus 437 Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl 508 (564)
T KOG1174|consen 437 YTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTL 508 (564)
T ss_pred cHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHH
Confidence 345677788899999999999999988865 68999999999999999999999999999998888876543
No 61
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.35 E-value=1.2e-08 Score=87.99 Aligned_cols=330 Identities=11% Similarity=0.100 Sum_probs=222.0
Q ss_pred hcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHH
Q 015726 50 KSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDH 129 (401)
Q Consensus 50 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 129 (401)
.++++..+|..+|+.+... ...+...|-..+.+=.+...++.|.-+|+..... .|.-..++..-+..=-..|++..
T Consensus 84 esq~e~~RARSv~ERALdv--d~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~g 159 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDV--DYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAG 159 (677)
T ss_pred HhHHHHHHHHHHHHHHHhc--ccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHH
Confidence 4556778899999888755 2335668888899999999999999999998732 33435566666666667899999
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 015726 130 AMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMR 209 (401)
Q Consensus 130 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 209 (401)
|.++|+.-.+. .|+...|++.|+.=.+.+.++.|..+|+..+ -+.|++.+|--....=-+.|....+..+|+...
T Consensus 160 aRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV---~~HP~v~~wikyarFE~k~g~~~~aR~VyerAi 234 (677)
T KOG1915|consen 160 ARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFV---LVHPKVSNWIKYARFEEKHGNVALARSVYERAI 234 (677)
T ss_pred HHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHh---eecccHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 99999998875 8999999999999999999999999999997 447999998888887788888888888888765
Q ss_pred hCCCCCCHH----hHHHHHHHHHccCChHHHHHHHHHHHH----------------------------------------
Q 015726 210 RKSIRPNAT----DFGLLLAGFYKEHKYEDVGKVLQMMEK---------------------------------------- 245 (401)
Q Consensus 210 ~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~---------------------------------------- 245 (401)
+. +. |.. .|.+....=.+...++.|.-+|+...+
T Consensus 235 e~-~~-~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE 312 (677)
T KOG1915|consen 235 EF-LG-DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYE 312 (677)
T ss_pred HH-hh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHH
Confidence 53 11 221 222222211222233333333332222
Q ss_pred ----cCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH--HHHHHHH-----HHH---hcCCChHHHHHHHH
Q 015726 246 ----CGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNL--DTYKHLI-----HGF---GKEGNLEGAKKLFA 311 (401)
Q Consensus 246 ----~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~li-----~~~---~~~~~~~~a~~~~~ 311 (401)
.+ +-|-.+|--.+..-...|+.+...++|++.... ++|-. ..|...| -++ ....+.+.+.++|+
T Consensus 313 ~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq 390 (677)
T KOG1915|consen 313 KEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQ 390 (677)
T ss_pred HHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 11 334455666666666778888888888887765 33321 1121111 111 23567777777777
Q ss_pred HHHhCCCCCCHhhHHHHHHH----HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 015726 312 SMTNGGCEPDSYCFFMFTYF----LCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRF 387 (401)
Q Consensus 312 ~m~~~~~~~~~~~~~~li~~----~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 387 (401)
..++. ++...+||..+--. -.+..++..|.+++..++ |.-|...+|...|..-.+.+.++....++++.++-.
T Consensus 391 ~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~ 467 (677)
T KOG1915|consen 391 ACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS 467 (677)
T ss_pred HHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 77662 33334454443322 345667777777777666 556777777777777777777777777777777777
Q ss_pred CCCcccch
Q 015726 388 PKSGDMWN 395 (401)
Q Consensus 388 ~~~~~~~~ 395 (401)
|.|..+|.
T Consensus 468 Pe~c~~W~ 475 (677)
T KOG1915|consen 468 PENCYAWS 475 (677)
T ss_pred hHhhHHHH
Confidence 77776664
No 62
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=5.8e-09 Score=90.12 Aligned_cols=326 Identities=10% Similarity=0.017 Sum_probs=172.4
Q ss_pred HHhcCCChhHHHHHhhhccCCCCCCcc-HhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCC
Q 015726 48 RLKSESNPFRILDICCGASLAPESPLD-RMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANM 126 (401)
Q Consensus 48 ~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 126 (401)
-+-+++.++.|++.+.++..- .|| +.-|.....+|...|+|++.++.-.+..+.. |.....+..-..++-..|+
T Consensus 124 ~~f~~kkY~eAIkyY~~AI~l---~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~E~lg~ 198 (606)
T KOG0547|consen 124 KFFRNKKYDEAIKYYTQAIEL---CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAHEQLGK 198 (606)
T ss_pred hhhhcccHHHHHHHHHHHHhc---CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHHHhhcc
Confidence 345667899999999998753 234 6788899999999999999888877766332 3334555555666777777
Q ss_pred hHHHHH----------------------HHHHH---------hhCC--CCCCHHHHHHHHHHHHh---------------
Q 015726 127 IDHAMQ----------------------TFEEM---------DKYG--LRQSVDALNALLLGCIL--------------- 158 (401)
Q Consensus 127 ~~~a~~----------------------~~~~~---------~~~~--~~~~~~~~~~l~~~~~~--------------- 158 (401)
+++|+. +++.. .+.+ +-|+.....+....+..
T Consensus 199 ~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa 278 (606)
T KOG0547|consen 199 FDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDA 278 (606)
T ss_pred HHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchh
Confidence 766654 11110 0011 11333322222222210
Q ss_pred ----------cC---CHHHHHHHH-----------------------------------------------HhchhhcCC
Q 015726 159 ----------SK---NYEEVKRIF-----------------------------------------------TEFPKVYGI 178 (401)
Q Consensus 159 ----------~~---~~~~a~~~~-----------------------------------------------~~~~~~~~~ 178 (401)
.+ .+..|.+.+ +..++..
T Consensus 279 ~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~-- 356 (606)
T KOG0547|consen 279 ALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLD-- 356 (606)
T ss_pred hHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcC--
Confidence 00 111111111 1111100
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHH
Q 015726 179 EPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIR 258 (401)
Q Consensus 179 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 258 (401)
+.+...|--+...|....+.++..+.|++..+.. +-+..+|..-.+...-.+++++|..-|++.+... +.+...|-.+
T Consensus 357 ~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl 434 (606)
T KOG0547|consen 357 PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQL 434 (606)
T ss_pred cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHH
Confidence 0011113333334444444444444444444432 2233344444444444455555555555555543 2244455555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCC-----CCCCHhhHHH-HHHHH
Q 015726 259 IQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGG-----CEPDSYCFFM-FTYFL 332 (401)
Q Consensus 259 l~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-----~~~~~~~~~~-li~~~ 332 (401)
..+..+.++++++...|++..++ ++-.+..|+-....+...++++.|.+.|+..++.. +..+...+.. .+-.+
T Consensus 435 ~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~ 513 (606)
T KOG0547|consen 435 CCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVL 513 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhh
Confidence 55556666777777777776665 23345666667777777777777777777666431 1112211111 11111
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 015726 333 CQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMK 384 (401)
Q Consensus 333 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 384 (401)
.=.+++..|..+++++++.+ +-....|..|...-...|++++|+++|++..
T Consensus 514 qwk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 514 QWKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred chhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 12366777777777776654 2234557777777777777777777777654
No 63
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=2.6e-09 Score=93.78 Aligned_cols=274 Identities=8% Similarity=-0.077 Sum_probs=209.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHH
Q 015726 111 ERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIK 190 (401)
Q Consensus 111 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 190 (401)
......-..-|...+++.++.++++...+.. ++....+..-|.++...|+..+-..+=.++++.+ |-...+|-++.-
T Consensus 244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y--P~~a~sW~aVg~ 320 (611)
T KOG1173|consen 244 LDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY--PSKALSWFAVGC 320 (611)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC--CCCCcchhhHHH
Confidence 3444555666778899999999999988876 6777777777888888998887777777777654 566778999998
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHH
Q 015726 191 SFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEE 270 (401)
Q Consensus 191 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 270 (401)
-|.-.|+..+|.+.|.+..... +.-...|-.....|.-.|..|+|...+...-+.= +-..--+--+.--|.+.++.+.
T Consensus 321 YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHH
Confidence 8888899999999999876542 1134578888889999999999998887765531 1111112334445677899999
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhC------CCCCCHhhHHHHHHHHHccCCHHHHHHH
Q 015726 271 AKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNG------GCEPDSYCFFMFTYFLCQGGEYETALKV 344 (401)
Q Consensus 271 a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~~~~~~~~~li~~~~~~g~~~~a~~~ 344 (401)
|.++|.+..... +.|+...+-+.-.....+.+.+|..+|+..+.. ...-...+++.|..+|.+.+.+++|+..
T Consensus 399 Ae~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 399 AEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 999999887763 336777777777777788999999999887622 1112456788888899999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCc
Q 015726 345 CRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSG 391 (401)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 391 (401)
+++.+... +.+..++.++.-.|...|+++.|.+.|.+.+-..|.|.
T Consensus 478 ~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~ 523 (611)
T KOG1173|consen 478 YQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNI 523 (611)
T ss_pred HHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccH
Confidence 99988775 66888999999999999999999999999888777663
No 64
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.34 E-value=1.1e-10 Score=107.14 Aligned_cols=247 Identities=14% Similarity=0.142 Sum_probs=172.1
Q ss_pred CCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHH
Q 015726 70 ESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDAL 149 (401)
Q Consensus 70 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 149 (401)
|+.|+..+|..+|.-|+..|+++.|- +|.-|. ....+.+...++.++.+....++.+.+. .|...+|
T Consensus 20 gi~PnRvtyqsLiarYc~~gdieaat-if~fm~-~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDty 86 (1088)
T KOG4318|consen 20 GILPNRVTYQSLIARYCTKGDIEAAT-IFPFME-IKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTY 86 (1088)
T ss_pred cCCCchhhHHHHHHHHcccCCCcccc-chhhhh-cccccccchhHHHHHhcccccccccCCC-----------CCchhHH
Confidence 68889999999999999999999999 998888 4456667889999999999988877665 6788999
Q ss_pred HHHHHHHHhcCCHHH---HHHHHHhchhh---cCCCCCH--------------HhHHHHHHHHHhcCChhHHHHHHHHHH
Q 015726 150 NALLLGCILSKNYEE---VKRIFTEFPKV---YGIEPNS--------------ETYNKVIKSFCESGDSSSVYSILAEMR 209 (401)
Q Consensus 150 ~~l~~~~~~~~~~~~---a~~~~~~~~~~---~~~~~~~--------------~~~~~l~~~~~~~~~~~~a~~~~~~~~ 209 (401)
..|..+|...||... ..+.+..+... .|+-... ..-...+....-.|-++.+++++..+.
T Consensus 87 t~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~P 166 (1088)
T KOG4318|consen 87 TNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVP 166 (1088)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 999999999998654 33322222111 1110000 011122333334455555555555442
Q ss_pred hCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHH
Q 015726 210 RKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDT 289 (401)
Q Consensus 210 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 289 (401)
..... . .+..+++-+... ....+++........-.++..+|.+++.+-...|+.+.|..++.+|.+.|+..+..-
T Consensus 167 vsa~~-~--p~~vfLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~Hy 241 (1088)
T KOG4318|consen 167 VSAWN-A--PFQVFLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHY 241 (1088)
T ss_pred ccccc-c--hHHHHHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccccc
Confidence 21100 0 111124433332 233344444333322258889999999999999999999999999999999888887
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCC
Q 015726 290 YKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGE 337 (401)
Q Consensus 290 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 337 (401)
|..|+-+ .++...+..+++.|.+.|+.|+..|+...+..+...|.
T Consensus 242 FwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 242 FWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred chhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 7777765 78888899999999999999999999988888888665
No 65
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.32 E-value=5.6e-08 Score=86.73 Aligned_cols=308 Identities=10% Similarity=-0.014 Sum_probs=193.2
Q ss_pred cHhHHHHHHHHHHhCCCchHHHHHHHHhhh-CCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHH-
Q 015726 74 DRMAFSIAVSKLSQANHFNAISQLLEELKT-RPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNA- 151 (401)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~- 151 (401)
....|..+...+...|+.+.+.+.+..... .+...............+...|++++|.+.+++..+.. +.+...+..
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~ 83 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLH 83 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHh
Confidence 345666777777777888887777766552 22222212333333445678899999999999988764 445545442
Q ss_pred --HHHHHHhcCCHHHHHHHHHhchhhcCCCCC-HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 015726 152 --LLLGCILSKNYEEVKRIFTEFPKVYGIEPN-SETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFY 228 (401)
Q Consensus 152 --l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 228 (401)
........+..+.+.+.+.... ...|+ ......+...+...|++++|.+.+++..+.. +.+...+..+...+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~ 159 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWA---PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLE 159 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccC---cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence 1222223455566666665432 12333 3344566678889999999999999998864 445677888889999
Q ss_pred ccCChHHHHHHHHHHHHcCCC-CCc--hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CcCHHHH-H--HHHHHHhcCC
Q 015726 229 KEHKYEDVGKVLQMMEKCGIA-SGV--NVYNIRIQSLCKLKRSEEAKALLDGMLSRGI-KPNLDTY-K--HLIHGFGKEG 301 (401)
Q Consensus 229 ~~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~p~~~~~-~--~li~~~~~~~ 301 (401)
..|++++|...+++..+.... ++. ..|..+...+...|++++|..++++...... .+..... + .++.-+...|
T Consensus 160 ~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g 239 (355)
T cd05804 160 MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAG 239 (355)
T ss_pred HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcC
Confidence 999999999999988775321 222 2355678889999999999999999864432 1222211 1 2333344445
Q ss_pred ChHHHHHH--HHHHHhCCC--CCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHc
Q 015726 302 NLEGAKKL--FASMTNGGC--EPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWV--------PHFSTMKSLVTGLAS 369 (401)
Q Consensus 302 ~~~~a~~~--~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~ 369 (401)
....+.++ +........ ............++...|+.++|..+++.+...... ...........++..
T Consensus 240 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~ 319 (355)
T cd05804 240 HVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFA 319 (355)
T ss_pred CCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHH
Confidence 43333333 211111110 111222235667788899999999999987764221 112233334445668
Q ss_pred cCCHHHHHHHHHHHHhc
Q 015726 370 ISKVAEANELIGLMKKR 386 (401)
Q Consensus 370 ~g~~~~a~~~~~~~~~~ 386 (401)
.|+.++|.+.+......
T Consensus 320 ~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 320 EGNYATALELLGPVRDD 336 (355)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 99999999999988765
No 66
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.29 E-value=3e-09 Score=95.75 Aligned_cols=243 Identities=15% Similarity=0.109 Sum_probs=178.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhh----cCC-CCCHHh-HHHHHHHHHhcCChhHHHHHHHHHHhC-----
Q 015726 143 RQSVDALNALLLGCILSKNYEEVKRIFTEFPKV----YGI-EPNSET-YNKVIKSFCESGDSSSVYSILAEMRRK----- 211 (401)
Q Consensus 143 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 211 (401)
+.-..+...+...|...|+++.|+.+++...+. .|. .|...+ .+.+...|...+++++|..+|+++...
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~ 275 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF 275 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 334556667889999999999999999887654 221 233333 445778889999999999999998653
Q ss_pred C-CCC-CHHhHHHHHHHHHccCChHHHHHHHHHHHHc-----CC-CCC-chhHHHHHHHHHhcCCHHHHHHHHHHHHHC-
Q 015726 212 S-IRP-NATDFGLLLAGFYKEHKYEDVGKVLQMMEKC-----GI-ASG-VNVYNIRIQSLCKLKRSEEAKALLDGMLSR- 281 (401)
Q Consensus 212 ~-~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~- 281 (401)
| ..| -..+++.|..+|++.|++++|...++...+. +. .+. ...++.+...++..+++++|..++.+..+.
T Consensus 276 G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~ 355 (508)
T KOG1840|consen 276 GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY 355 (508)
T ss_pred CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 2 111 2346777778899999999999888776432 11 111 234566777888999999999999876542
Q ss_pred --CCCcC----HHHHHHHHHHHhcCCChHHHHHHHHHHHhC----CCC--C-CHhhHHHHHHHHHccCCHHHHHHHHHHH
Q 015726 282 --GIKPN----LDTYKHLIHGFGKEGNLEGAKKLFASMTNG----GCE--P-DSYCFFMFTYFLCQGGEYETALKVCRAS 348 (401)
Q Consensus 282 --~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~~ 348 (401)
-+.++ ..+++.|...|...|++++|.++++..+.. +.+ + ....++.+...|.+.+++.+|.++|.+.
T Consensus 356 ~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~ 435 (508)
T KOG1840|consen 356 LDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEA 435 (508)
T ss_pred HhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 12222 367899999999999999999999987743 111 2 2456788889999999999999998875
Q ss_pred HHC----CC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 015726 349 MAK----GW--VPHFSTMKSLVTGLASISKVAEANELIGLMKK 385 (401)
Q Consensus 349 ~~~----~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 385 (401)
..- |. +-...+|..|...|...|+++.|.++.+.+..
T Consensus 436 ~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 436 KDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 432 32 22346789999999999999999999988763
No 67
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=2.5e-08 Score=86.31 Aligned_cols=83 Identities=8% Similarity=0.045 Sum_probs=57.6
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC-HHHHHHHHHHH
Q 015726 78 FSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQS-VDALNALLLGC 156 (401)
Q Consensus 78 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~ 156 (401)
+-....-|-+.|.+++|++.|.+....... .+.+|.....+|...|+++++.+.-.+.++.+ |+ ...+..-..++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~--epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIELCPD--EPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhcCCC--CchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHH
Confidence 334456678899999999999999843221 15689999999999999999999888887753 33 23333333444
Q ss_pred HhcCCHHH
Q 015726 157 ILSKNYEE 164 (401)
Q Consensus 157 ~~~~~~~~ 164 (401)
-..|++++
T Consensus 194 E~lg~~~e 201 (606)
T KOG0547|consen 194 EQLGKFDE 201 (606)
T ss_pred HhhccHHH
Confidence 44455444
No 68
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.27 E-value=4.8e-09 Score=90.25 Aligned_cols=220 Identities=9% Similarity=0.053 Sum_probs=151.2
Q ss_pred hcCChHHHHHHHHHHhhCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChh
Q 015726 123 QANMIDHAMQTFEEMDKYG-LRQ--SVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSS 199 (401)
Q Consensus 123 ~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 199 (401)
..+..+.++.-+.+++... ..| ....|..+...|...|+.++|...|++..+.. +.+...|+.+...+...|+++
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~~~~~g~~~ 115 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR--PDMADAYNYLGIYLTQAGNFD 115 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHCCCHH
Confidence 4466788888888887543 122 24557777788889999999999999887642 445678899999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015726 200 SVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGML 279 (401)
Q Consensus 200 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 279 (401)
+|.+.|++..+.. +-+..++..+..++...|++++|.+.++...+.. |+..........+...++.++|...|++..
T Consensus 116 ~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 116 AAYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 9999999988753 3356777888888889999999999999988764 433322222333445678999999997655
Q ss_pred HCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhC---CC--CC-CHhhHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 015726 280 SRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNG---GC--EP-DSYCFFMFTYFLCQGGEYETALKVCRASMAKG 352 (401)
Q Consensus 280 ~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 352 (401)
... .|+...+ .+.. ...|+...+ +.+..+.+. .. .| ....|..+...+.+.|++++|...|++..+.+
T Consensus 193 ~~~-~~~~~~~-~~~~--~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 193 EKL-DKEQWGW-NIVE--FYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred hhC-CccccHH-HHHH--HHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 432 2232222 2222 234555444 344444422 11 11 23578888888999999999999999988776
No 69
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.26 E-value=5e-10 Score=94.97 Aligned_cols=153 Identities=18% Similarity=0.233 Sum_probs=72.1
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH----HhcCC
Q 015726 226 GFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHG----FGKEG 301 (401)
Q Consensus 226 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~----~~~~~ 301 (401)
.+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+.+ .| .+...+..+ +...+
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCch
Confidence 344455555555554321 233444455555555666666666665555432 12 222222222 22223
Q ss_pred ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH-HHHHHHH
Q 015726 302 NLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKV-AEANELI 380 (401)
Q Consensus 302 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~ 380 (401)
.+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+....+ +-++.++..++-+....|+. +.+.+++
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 455566666665433 33455555555555556666666666655555443 33444555555555555554 4455555
Q ss_pred HHHHhcCCC
Q 015726 381 GLMKKRFPK 389 (401)
Q Consensus 381 ~~~~~~~~~ 389 (401)
+++.+..|.
T Consensus 260 ~qL~~~~p~ 268 (290)
T PF04733_consen 260 SQLKQSNPN 268 (290)
T ss_dssp HHCHHHTTT
T ss_pred HHHHHhCCC
Confidence 555554443
No 70
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=4.8e-08 Score=82.87 Aligned_cols=308 Identities=9% Similarity=-0.001 Sum_probs=225.2
Q ss_pred cchhhchhHHHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhh-CCCCCCc
Q 015726 32 EAAALTIKEKKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKT-RPDLRQN 110 (401)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~ 110 (401)
.++..+..+.|..+.......... .|...+-........+.+......+.+.+...|+.++|+..|++... .|....
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs-~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~- 267 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHS-DASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVE- 267 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccc-hhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhh-
Confidence 345567777887777666555533 33333333333444777999999999999999999999999999872 222222
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHH
Q 015726 111 ERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIK 190 (401)
Q Consensus 111 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 190 (401)
....-...+.+.|+++....+...+.... ..+...|..-.......++++.|+.+-++.++.. +.+...+-.-..
T Consensus 268 --~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~--~r~~~alilKG~ 342 (564)
T KOG1174|consen 268 --AMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE--PRNHEALILKGR 342 (564)
T ss_pred --hHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC--cccchHHHhccH
Confidence 22222334567899999988888877643 3455566666666677889999999988887542 334455555566
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHH-HHHH-hcCCH
Q 015726 191 SFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRI-QSLC-KLKRS 268 (401)
Q Consensus 191 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll-~~~~-~~~~~ 268 (401)
.+...++.++|.-.|+...... +-+...|.-++.+|...|++.+|.-+-++..+. ++.+..+.+.+. ..+. ...--
T Consensus 343 lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~r 420 (564)
T KOG1174|consen 343 LLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMR 420 (564)
T ss_pred HHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhH
Confidence 7788999999999999987652 457889999999999999999998877766554 344555555442 2222 22345
Q ss_pred HHHHHHHHHHHHCCCCcC-HHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHH
Q 015726 269 EEAKALLDGMLSRGIKPN-LDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRA 347 (401)
Q Consensus 269 ~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 347 (401)
++|.++++.-... .|+ ....+.+...|...|..+.+..+++..... .||....+.+...+...+.+++|+..|..
T Consensus 421 EKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ 496 (564)
T KOG1174|consen 421 EKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYK 496 (564)
T ss_pred HHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 7888888877765 455 456777888899999999999999998874 78999999999999999999999999998
Q ss_pred HHHCC
Q 015726 348 SMAKG 352 (401)
Q Consensus 348 ~~~~~ 352 (401)
+...+
T Consensus 497 ALr~d 501 (564)
T KOG1174|consen 497 ALRQD 501 (564)
T ss_pred HHhcC
Confidence 88664
No 71
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.26 E-value=1.1e-08 Score=92.23 Aligned_cols=243 Identities=19% Similarity=0.245 Sum_probs=177.6
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHHHHhhC-----CC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHhchhhc----
Q 015726 108 RQNERFHVHSIVLYGQANMIDHAMQTFEEMDKY-----GL-RQSV-DALNALLLGCILSKNYEEVKRIFTEFPKVY---- 176 (401)
Q Consensus 108 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---- 176 (401)
|.-..+...+...|...|+++.|..+++...+. |. .|.. ...+.+...|...+++++|..+|+++....
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~ 275 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF 275 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 333566777889999999999999999987764 21 2222 234457778899999999999999885421
Q ss_pred CC-CCC-HHhHHHHHHHHHhcCChhHHHHHHHHHHhC-----CC-CCCH-HhHHHHHHHHHccCChHHHHHHHHHHHHc-
Q 015726 177 GI-EPN-SETYNKVIKSFCESGDSSSVYSILAEMRRK-----SI-RPNA-TDFGLLLAGFYKEHKYEDVGKVLQMMEKC- 246 (401)
Q Consensus 177 ~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~- 246 (401)
|- .|. ..+++.|...|++.|++++|...+++..+. |. .|.. ..++.+...|+..+++++|..+++...+.
T Consensus 276 G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~ 355 (508)
T KOG1840|consen 276 GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY 355 (508)
T ss_pred CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 21 122 346788888999999999998888776432 11 1222 23666778889999999999998876442
Q ss_pred --CCCCC----chhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCcC-HHHHHHHHHHHhcCCChHHHHHHHHHH
Q 015726 247 --GIASG----VNVYNIRIQSLCKLKRSEEAKALLDGMLSR-----G-IKPN-LDTYKHLIHGFGKEGNLEGAKKLFASM 313 (401)
Q Consensus 247 --~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~-~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m 313 (401)
-+.++ ..+++.+...|...|++++|.+++++.... | ..+. ...++.|...|.+.+++.+|.++|.+.
T Consensus 356 ~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~ 435 (508)
T KOG1840|consen 356 LDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEA 435 (508)
T ss_pred HhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 12222 367899999999999999999999987653 1 1222 356788888999999999999888764
Q ss_pred H----hCCC-CC-CHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 015726 314 T----NGGC-EP-DSYCFFMFTYFLCQGGEYETALKVCRASMA 350 (401)
Q Consensus 314 ~----~~~~-~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 350 (401)
. ..|. .| ...+|..|...|.+.|+++.|.++.+....
T Consensus 436 ~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 436 KDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3 3332 22 246789999999999999999999887663
No 72
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.25 E-value=1.9e-08 Score=86.63 Aligned_cols=218 Identities=17% Similarity=0.114 Sum_probs=132.3
Q ss_pred CCchHHHHHHHHhhhCCCCCC--chhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 015726 89 NHFNAISQLLEELKTRPDLRQ--NERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVK 166 (401)
Q Consensus 89 ~~~~~a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 166 (401)
+..+.++.-+.++.......+ ....|..+...|...|++++|...|++..+.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 345556666666653222211 13456666667777788888888888777765 456777777878888888888888
Q ss_pred HHHHhchhhcCCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHH
Q 015726 167 RIFTEFPKVYGIEP-NSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEK 245 (401)
Q Consensus 167 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 245 (401)
+.|++..+. .| +..+|..+...+...|++++|.+.|++..+.. |+..........+...++.++|...+++...
T Consensus 119 ~~~~~Al~l---~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 119 EAFDSVLEL---DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 888877643 34 35566777777777888888888888777652 3322222222233456677888888766543
Q ss_pred cCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CC--Cc-CHHHHHHHHHHHhcCCChHHHHHHHHHHHhCC
Q 015726 246 CGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSR---GI--KP-NLDTYKHLIHGFGKEGNLEGAKKLFASMTNGG 317 (401)
Q Consensus 246 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~--~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 317 (401)
.. .++... ..+. ....|+...+ ..++.+.+. .+ .| ....|..+...+.+.|++++|...|++..+.+
T Consensus 194 ~~-~~~~~~-~~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 194 KL-DKEQWG-WNIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred hC-CccccH-HHHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 32 222221 1222 2234554443 244444322 11 11 23567778888888888888888888888754
No 73
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=2e-08 Score=88.47 Aligned_cols=285 Identities=13% Similarity=0.066 Sum_probs=220.0
Q ss_pred cHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 015726 74 DRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALL 153 (401)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 153 (401)
+......-.+-+-..+++.+..++.+.+.....+. ...+..-|..+...|+..+-..+=.++.+.- +..+.+|-++.
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh--~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg 319 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFH--LPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVG 319 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCC--cchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHH
Confidence 45556666777888999999999999988544333 3456666668888899888888888887764 66788899998
Q ss_pred HHHHhcCCHHHHHHHHHhchhhcCCCCC-HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCC
Q 015726 154 LGCILSKNYEEVKRIFTEFPKVYGIEPN-SETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHK 232 (401)
Q Consensus 154 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 232 (401)
--|.-.|...+|.+.|.+.. .+.|. ...|-.+.+.|.-.|..++|+..|...-+. ++-...-+--+.--|.+.+.
T Consensus 320 ~YYl~i~k~seARry~SKat---~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n 395 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKAT---TLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNN 395 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHh---hcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhcc
Confidence 88888899999999998875 22333 457888999999999999999999887553 11122223334455778899
Q ss_pred hHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CC-cCHHHHHHHHHHHhcCCChHHH
Q 015726 233 YEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSR----G-IK-PNLDTYKHLIHGFGKEGNLEGA 306 (401)
Q Consensus 233 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~-p~~~~~~~li~~~~~~~~~~~a 306 (401)
.+.|.+.|.+..... +.|....+-+.-.....+.+.+|..+|+..... + -+ .-..+++.|..+|.+.+.+++|
T Consensus 396 ~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 396 LKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred HHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 999999999988863 557777887777777889999999999887632 1 11 1345688899999999999999
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 015726 307 KKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLAS 369 (401)
Q Consensus 307 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 369 (401)
+..++..+... +.+..++.++.-.|...|+++.|.+.|.+... +.|+..+...++..+..
T Consensus 475 I~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 475 IDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHHH
Confidence 99999988763 56788999999999999999999999998874 57888777777765543
No 74
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.25 E-value=1.9e-08 Score=78.72 Aligned_cols=203 Identities=14% Similarity=0.084 Sum_probs=148.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHh
Q 015726 185 YNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCK 264 (401)
Q Consensus 185 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 264 (401)
..-+.-.|.+.|+...|.+-+++.++.. +.+..+|..+...|.+.|+.+.|.+.|++..... +.+..+.|..-..+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 3445667778888888888888887763 3356677777788888888888888888877764 3456677778888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHH
Q 015726 265 LKRSEEAKALLDGMLSRGIKP-NLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALK 343 (401)
Q Consensus 265 ~~~~~~a~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 343 (401)
.|++++|...|++....-.-+ -..+|..+.-+..+.|+.+.|.+.|++.++.. +-...+...+.....+.|++-.|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHH
Confidence 888888888888777652111 24567777777778888888888888887753 2234566777777788888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCc
Q 015726 344 VCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSG 391 (401)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 391 (401)
+++.....+. ++..+....|+.-...|+-+.+.++=.++...+|...
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSE 241 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 8887776653 7777777777777788888888777777777676554
No 75
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.23 E-value=2.7e-08 Score=77.94 Aligned_cols=197 Identities=11% Similarity=0.008 Sum_probs=107.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHH
Q 015726 114 HVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFC 193 (401)
Q Consensus 114 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 193 (401)
...+...|...|++..|.+-+++.++.. +.+..+|..+...|.+.|+.+.|.+.|++..+.. +-+-.+.|.....+|
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~--p~~GdVLNNYG~FLC 114 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA--PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC--CCccchhhhhhHHHH
Confidence 3344455566666666666666666554 3445556666666666666666666666655331 223344555555566
Q ss_pred hcCChhHHHHHHHHHHhCC-CCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHH
Q 015726 194 ESGDSSSVYSILAEMRRKS-IRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAK 272 (401)
Q Consensus 194 ~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 272 (401)
..|++++|...|++..... ..--..+|..+.-+..+.|+.+.|...|++..+.. +....+.-.+.....+.|++..|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 6666666666666654432 11223455555555556666666666666655543 223334445555555566666666
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 015726 273 ALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTN 315 (401)
Q Consensus 273 ~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 315 (401)
..++.....+. ++..+.-..|+.-...|+.+.+-++=..+.+
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 66666555543 4555555555555555665555555444443
No 76
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.11 E-value=5e-08 Score=79.31 Aligned_cols=329 Identities=13% Similarity=0.096 Sum_probs=178.2
Q ss_pred HHHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHH
Q 015726 40 EKKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIV 119 (401)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 119 (401)
+.+..++..+-+..++..|++++...... .+.+......+..+|-+..++..|...++++... .|.-...--.-..
T Consensus 11 Geftaviy~lI~d~ry~DaI~~l~s~~Er--~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQ 86 (459)
T KOG4340|consen 11 GEFTAVVYRLIRDARYADAIQLLGSELER--SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQ 86 (459)
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHH
Confidence 34556666666666777777777665443 2335666777777777777777777777776522 1221222222344
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCC
Q 015726 120 LYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLG--CILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGD 197 (401)
Q Consensus 120 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 197 (401)
...+.+.+.+|+++...|.+. ++...-..-+.+ ....+++..+..++++.+. +-+..+.+.......+.|+
T Consensus 87 SLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~----en~Ad~~in~gCllykegq 159 (459)
T KOG4340|consen 87 SLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS----ENEADGQINLGCLLYKEGQ 159 (459)
T ss_pred HHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccC----CCccchhccchheeecccc
Confidence 455667777777777777542 222222222222 2345667777777777642 2233344444444566777
Q ss_pred hhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCc-------------------------
Q 015726 198 SSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGV------------------------- 252 (401)
Q Consensus 198 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------------------------- 252 (401)
++.|.+-|+...+-|.--....|+..+.. .+.|+++.|++...++.++|+....
T Consensus 160 yEaAvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~S 238 (459)
T KOG4340|consen 160 YEAAVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQS 238 (459)
T ss_pred HHHHHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHH
Confidence 77777777777664433345556655543 4556777777777777777664211
Q ss_pred ---hhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHH
Q 015726 253 ---NVYNIRIQSLCKLKRSEEAKALLDGMLSRG-IKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMF 328 (401)
Q Consensus 253 ---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 328 (401)
..+|.-...+.+.|+++.|.+.+-.|--+. ...|++|...+.-.- ..+++....+-+.-+.+.+ +-...||..+
T Consensus 239 al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANl 316 (459)
T KOG4340|consen 239 ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANL 316 (459)
T ss_pred HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHH
Confidence 112222333455667777766666664321 233555554443221 2344555555555455443 2345577777
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHH-ccCCHHHHHHHHHHH
Q 015726 329 TYFLCQGGEYETALKVCRASMAKGWV-PHFSTMKSLVTGLA-SISKVAEANELIGLM 383 (401)
Q Consensus 329 i~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~ 383 (401)
+-.||+..-++.|..++.+-...-.. .+...|+ |++++. -.-..++|.+-++.+
T Consensus 317 LllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 317 LLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred HHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHH
Confidence 77777777777777766542222111 1222232 333333 234566666655554
No 77
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.11 E-value=1.2e-08 Score=86.60 Aligned_cols=252 Identities=12% Similarity=0.047 Sum_probs=144.9
Q ss_pred HHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 015726 83 SKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNY 162 (401)
Q Consensus 83 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 162 (401)
+-.-..|.+..++.-.+ .. .............+.+++...|+++.++ .++.... .|.......+...+...++-
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~-~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LK-SFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CH-TSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHhhhHHHHHHHhh-cc-CCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccch
Confidence 44456677777775555 22 1111222344455667777777766544 3333322 55555555554444443455
Q ss_pred HHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHH
Q 015726 163 EEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQM 242 (401)
Q Consensus 163 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 242 (401)
+.+..-+++.........+..........+...|++++|++++..- .+.......+..+.+.++++.|.+.++.
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555555544332111122222222334455667888888777542 3556666777888888888888888888
Q ss_pred HHHcCCCCCchhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCC
Q 015726 243 MEKCGIASGVNVYNIRIQSLCK----LKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGC 318 (401)
Q Consensus 243 ~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 318 (401)
|.+.+ .| .+...+..++.. .+.+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+..+.+
T Consensus 157 ~~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~- 231 (290)
T PF04733_consen 157 MQQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD- 231 (290)
T ss_dssp HHCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--
T ss_pred HHhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-
Confidence 87653 23 334444444332 34688888888887665 45677778888888888888888888888877653
Q ss_pred CCCHhhHHHHHHHHHccCCH-HHHHHHHHHHHHC
Q 015726 319 EPDSYCFFMFTYFLCQGGEY-ETALKVCRASMAK 351 (401)
Q Consensus 319 ~~~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~~ 351 (401)
+-+..+...++.+....|+. +.+.+++.++...
T Consensus 232 ~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 232 PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 33455666667766677766 6677777777654
No 78
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.11 E-value=4.2e-07 Score=81.10 Aligned_cols=267 Identities=13% Similarity=0.042 Sum_probs=150.9
Q ss_pred HHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHH---HHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 015726 80 IAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVH---SIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGC 156 (401)
Q Consensus 80 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 156 (401)
.....+...|++++|.+++++.... .|.+...+.. ........+..+.+.+.+..... ..+........+...+
T Consensus 48 ~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~a~~~ 124 (355)
T cd05804 48 VEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAP-ENPDYWYLLGMLAFGL 124 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCc-CCCCcHHHHHHHHHHH
Confidence 3344566778888888888887633 2333333332 11112234555555555554211 1122334444556677
Q ss_pred HhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCH--HhHHHHHHHHHccCCh
Q 015726 157 ILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSI-RPNA--TDFGLLLAGFYKEHKY 233 (401)
Q Consensus 157 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~ll~~~~~~~~~ 233 (401)
...|++++|...+++..+.. +.+...+..+...+...|++++|...+++...... .++. ..|..+...+...|++
T Consensus 125 ~~~G~~~~A~~~~~~al~~~--p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~ 202 (355)
T cd05804 125 EEAGQYDRAEEAARRALELN--PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDY 202 (355)
T ss_pred HHcCCHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCH
Confidence 78888888888888887542 44456677778888888888888888888766421 1222 2345677778888888
Q ss_pred HHHHHHHHHHHHcCC-CCCchhH-H--HHHHHHHhcCCHHHHHHH--H-HHHHHCCC-CcCHHHHHHHHHHHhcCCChHH
Q 015726 234 EDVGKVLQMMEKCGI-ASGVNVY-N--IRIQSLCKLKRSEEAKAL--L-DGMLSRGI-KPNLDTYKHLIHGFGKEGNLEG 305 (401)
Q Consensus 234 ~~a~~~~~~~~~~~~-~~~~~~~-~--~ll~~~~~~~~~~~a~~~--~-~~~~~~~~-~p~~~~~~~li~~~~~~~~~~~ 305 (401)
++|..++++...... .+..... + .++.-+...|....+.+. + ........ ............++...|+.+.
T Consensus 203 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 282 (355)
T cd05804 203 EAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDA 282 (355)
T ss_pred HHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHH
Confidence 888888888754322 1111111 1 223333334433333322 1 11111100 1111222355667778888888
Q ss_pred HHHHHHHHHhCCCC------C--CHhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 015726 306 AKKLFASMTNGGCE------P--DSYCFFMFTYFLCQGGEYETALKVCRASMAK 351 (401)
Q Consensus 306 a~~~~~~m~~~~~~------~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 351 (401)
|..+++.+...... . .........-++...|+.++|.+.+......
T Consensus 283 a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 283 LDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888887653211 1 1122223334456788999998888877665
No 79
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.10 E-value=2.1e-08 Score=92.69 Aligned_cols=317 Identities=13% Similarity=0.116 Sum_probs=202.1
Q ss_pred hchhHHHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHH
Q 015726 36 LTIKEKKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHV 115 (401)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 115 (401)
.|.+..+...|..+...|+.+.|- +|..|..+ ..+.+...++.++......++.+.+. .+...+|.
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~k-sLpv~e~vf~~lv~sh~~And~Enpk------------ep~aDtyt 87 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIK-SLPVREGVFRGLVASHKEANDAENPK------------EPLADTYT 87 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcc-cccccchhHHHHHhcccccccccCCC------------CCchhHHH
Confidence 344567888899999999998887 77777654 35667778888888878887766554 22267899
Q ss_pred HHHHHHHhcCChHH---HHHHHHHHh----hCCCCCCHH--------------HHHHHHHHHHhcCCHHHHHHHHHhchh
Q 015726 116 HSIVLYGQANMIDH---AMQTFEEMD----KYGLRQSVD--------------ALNALLLGCILSKNYEEVKRIFTEFPK 174 (401)
Q Consensus 116 ~li~~~~~~~~~~~---a~~~~~~~~----~~~~~~~~~--------------~~~~l~~~~~~~~~~~~a~~~~~~~~~ 174 (401)
.+..+|...|+... +.+.+..+. ..|+.-... .-...+......|.++.+++++..++.
T Consensus 88 ~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pv 167 (1088)
T KOG4318|consen 88 NLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPV 167 (1088)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 99999999988544 333222221 122211111 112234445566778888888877764
Q ss_pred hcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchh
Q 015726 175 VYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNV 254 (401)
Q Consensus 175 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 254 (401)
.....|... +++-+.. ++....++.+......-.|++.+|..++..-...|+.+.|..++.+|.+.|++.+..-
T Consensus 168 sa~~~p~~v----fLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~Hy 241 (1088)
T KOG4318|consen 168 SAWNAPFQV----FLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHY 241 (1088)
T ss_pred ccccchHHH----HHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccccc
Confidence 432222222 2443332 2333444444333321268999999999999999999999999999999999888776
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc
Q 015726 255 YNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQ 334 (401)
Q Consensus 255 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 334 (401)
|-.++-+ .++...+..++.-|.+.|+.|+..|+...+..+..+|....+ +.| .+....+.+-...-.-
T Consensus 242 FwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~--------~e~-sq~~hg~tAavrsaa~ 309 (1088)
T KOG4318|consen 242 FWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYG--------EEG-SQLAHGFTAAVRSAAC 309 (1088)
T ss_pred chhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhc--------ccc-cchhhhhhHHHHHHHh
Confidence 6666655 788999999999999999999999999888888776552222 222 2333333333332222
Q ss_pred cC-----CHHH-----HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 015726 335 GG-----EYET-----ALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKK 385 (401)
Q Consensus 335 ~g-----~~~~-----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 385 (401)
.| +.+. ....+.+..-.|+.....+|....+ ...+|+-++..++...+..
T Consensus 310 rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~n 369 (1088)
T KOG4318|consen 310 RGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLN 369 (1088)
T ss_pred cccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcC
Confidence 33 1111 1222222223366666644444444 4457999999999888754
No 80
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=1.2e-06 Score=77.94 Aligned_cols=343 Identities=15% Similarity=0.069 Sum_probs=199.8
Q ss_pred HHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHH
Q 015726 41 KKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVL 120 (401)
Q Consensus 41 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 120 (401)
.+-.-+......+++++|+......... .+.|...+..-+-++.+.++|++|+.+.+.- +....+..++-.-..+
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~--~pdd~~a~~cKvValIq~~ky~~ALk~ikk~---~~~~~~~~~~fEKAYc 88 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSI--VPDDEDAIRCKVVALIQLDKYEDALKLIKKN---GALLVINSFFFEKAYC 88 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhc--CCCcHhhHhhhHhhhhhhhHHHHHHHHHHhc---chhhhcchhhHHHHHH
Confidence 3444456777788999999988887665 4556777888888889999999999766552 2212211121222334
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcC-----------------------
Q 015726 121 YGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYG----------------------- 177 (401)
Q Consensus 121 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------------------- 177 (401)
..+.++.|+|+..++-.. +.+..+...-...+.+.|++++|.++|+.+.+...
T Consensus 89 ~Yrlnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~ 164 (652)
T KOG2376|consen 89 EYRLNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLL 164 (652)
T ss_pred HHHcccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHH
Confidence 457888999988888332 22333555556778888999999999888843210
Q ss_pred ----CCCCHHhHHHHH---HHHHhcCChhHHHHHHHHHHhCCC------CCC-------HH-hHHHHHHHHHccCChHHH
Q 015726 178 ----IEPNSETYNKVI---KSFCESGDSSSVYSILAEMRRKSI------RPN-------AT-DFGLLLAGFYKEHKYEDV 236 (401)
Q Consensus 178 ----~~~~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~~------~~~-------~~-~~~~ll~~~~~~~~~~~a 236 (401)
..| ..+|..+. ..+...|++.+|+++++...+.+. .-+ .. .-..+.-.+...|+..+|
T Consensus 165 q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea 243 (652)
T KOG2376|consen 165 QSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA 243 (652)
T ss_pred HhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 111 12333333 345667999999999988733210 001 11 112344456678888888
Q ss_pred HHHHHHHHHcCCCCCch----hHHHH-----------------------------------------------HHHHHh-
Q 015726 237 GKVLQMMEKCGIASGVN----VYNIR-----------------------------------------------IQSLCK- 264 (401)
Q Consensus 237 ~~~~~~~~~~~~~~~~~----~~~~l-----------------------------------------------l~~~~~- 264 (401)
..++......+. +|.. .-|.+ +..|..
T Consensus 244 ~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk 322 (652)
T KOG2376|consen 244 SSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNK 322 (652)
T ss_pred HHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 888887766542 2211 00111 111100
Q ss_pred -------------------------------cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHH--
Q 015726 265 -------------------------------LKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFA-- 311 (401)
Q Consensus 265 -------------------------------~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~-- 311 (401)
......+..++...-+....-.....-.++......|+++.|.+++.
T Consensus 323 ~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~ 402 (652)
T KOG2376|consen 323 MDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLF 402 (652)
T ss_pred HHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 01122233333333222111123344556666778899999999988
Q ss_pred ------HHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHC--CCCCCHH----HHHHHHHHHHccCCHHHHHHH
Q 015726 312 ------SMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAK--GWVPHFS----TMKSLVTGLASISKVAEANEL 379 (401)
Q Consensus 312 ------~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~----~~~~l~~~~~~~g~~~~a~~~ 379 (401)
.+.+.+..| .+...+...+.+.++.+.|..++.+.... .-.+... ++.-++..-.+.|+.++|..+
T Consensus 403 ~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~ 480 (652)
T KOG2376|consen 403 LESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSL 480 (652)
T ss_pred hhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHH
Confidence 444444334 45556666677777766666666665543 1111112 233333344567999999999
Q ss_pred HHHHHhcCCCCcccchh
Q 015726 380 IGLMKKRFPKSGDMWNA 396 (401)
Q Consensus 380 ~~~~~~~~~~~~~~~~~ 396 (401)
++++.+.+|+|..+.-.
T Consensus 481 leel~k~n~~d~~~l~~ 497 (652)
T KOG2376|consen 481 LEELVKFNPNDTDLLVQ 497 (652)
T ss_pred HHHHHHhCCchHHHHHH
Confidence 99999988888765443
No 81
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.09 E-value=2e-06 Score=77.45 Aligned_cols=131 Identities=10% Similarity=0.061 Sum_probs=87.4
Q ss_pred HhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChH
Q 015726 49 LKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMID 128 (401)
Q Consensus 49 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 128 (401)
+...|+.++|.+..+...+. ...+...|+.+.-.+....++++|++.|....... +.|.+++..+...-++.|+++
T Consensus 51 L~~lg~~~ea~~~vr~glr~--d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~--~dN~qilrDlslLQ~QmRd~~ 126 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGLRN--DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE--KDNLQILRDLSLLQIQMRDYE 126 (700)
T ss_pred hhcccchHHHHHHHHHHhcc--CcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhh
Confidence 45566777888777766543 44466788888888888888999999988877332 555677777776666777777
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHh
Q 015726 129 HAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSET 184 (401)
Q Consensus 129 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 184 (401)
.....-..+.+.. +.....|..+..++.-.|+...|..++++..+.....|+...
T Consensus 127 ~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~ 181 (700)
T KOG1156|consen 127 GYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKED 181 (700)
T ss_pred hHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHH
Confidence 7766666666553 334445666666666677777777777777554332344443
No 82
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.07 E-value=1.7e-06 Score=71.99 Aligned_cols=307 Identities=11% Similarity=0.032 Sum_probs=190.4
Q ss_pred ccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHH-H
Q 015726 73 LDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALN-A 151 (401)
Q Consensus 73 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~ 151 (401)
.+..-.--+-..+...|++..|+.-|...... .|.+-..+-.-...|...|+-.-|+.-+...++. +||-..-. -
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~--dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQ 111 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEG--DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQ 111 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHH
Confidence 34444555566666777777777777766522 2332333333345566677777777777776665 45533221 1
Q ss_pred HHHHHHhcCCHHHHHHHHHhchhhcCCCCCHH----h------------HHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 015726 152 LLLGCILSKNYEEVKRIFTEFPKVYGIEPNSE----T------------YNKVIKSFCESGDSSSVYSILAEMRRKSIRP 215 (401)
Q Consensus 152 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 215 (401)
-...+.+.|.++.|..=|+.+.+. .|+.. . ....+..+.-.|+...|++.+..+.+. .+.
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~---~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~W 187 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQH---EPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-QPW 187 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhc---CCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc-Ccc
Confidence 223456777777777777777654 33211 1 112333455567888888888887776 356
Q ss_pred CHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHH----HH
Q 015726 216 NATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDT----YK 291 (401)
Q Consensus 216 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~----~~ 291 (401)
|...+..-..+|...|++..|+.-++...+.. ..++.++--+-..+...|+.+.++...++..+. .||... |.
T Consensus 188 da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YK 264 (504)
T KOG0624|consen 188 DASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYK 264 (504)
T ss_pred hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHH
Confidence 77777777788888888888887777766653 334555556667777778888887777777665 344322 11
Q ss_pred HH---------HHHHhcCCChHHHHHHHHHHHhCCCCCCHhh---HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH
Q 015726 292 HL---------IHGFGKEGNLEGAKKLFASMTNGGCEPDSYC---FFMFTYFLCQGGEYETALKVCRASMAKGWVPHFST 359 (401)
Q Consensus 292 ~l---------i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~---~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 359 (401)
.+ +......+++.++.+..+...+......... +..+-.++...|++.+|++...+.++.. +.|+.+
T Consensus 265 klkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~ 343 (504)
T KOG0624|consen 265 KLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQV 343 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHH
Confidence 11 1223456777777777777766532212222 2334455566778888888888877653 334777
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCc
Q 015726 360 MKSLVTGLASISKVAEANELIGLMKKRFPKSG 391 (401)
Q Consensus 360 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 391 (401)
+.--..+|.-...++.|+.-|+...+..+.|.
T Consensus 344 l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 344 LCDRAEAYLGDEMYDDAIHDYEKALELNESNT 375 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH
Confidence 87778888888888888888888877766554
No 83
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.05 E-value=1.5e-06 Score=78.16 Aligned_cols=336 Identities=10% Similarity=0.017 Sum_probs=193.9
Q ss_pred hhHHHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCC-----CCCCchh
Q 015726 38 IKEKKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRP-----DLRQNER 112 (401)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~ 112 (401)
....+...+..+.+.+-|+-++.+++....- ++..-+-.|..++..+++++|.+.+.....++ ..+++..
T Consensus 137 H~rIW~lyl~Fv~~~~lPets~rvyrRYLk~-----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~q 211 (835)
T KOG2047|consen 137 HDRIWDLYLKFVESHGLPETSIRVYRRYLKV-----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQ 211 (835)
T ss_pred hccchHHHHHHHHhCCChHHHHHHHHHHHhc-----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhh
Confidence 3445777888888888888888888876543 34446667888899999999999988877322 1244456
Q ss_pred HHHHHHHHHHhcCCh---HHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHH
Q 015726 113 FHVHSIVLYGQANMI---DHAMQTFEEMDKYGLRQS--VDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNK 187 (401)
Q Consensus 113 ~~~~li~~~~~~~~~---~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 187 (401)
.|..+-....+.-+. -.+..++..+... -+| ...|.+|.+-|++.|.+++|.++|++.... .....-|..
T Consensus 212 lw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~---v~tvrDFt~ 286 (835)
T KOG2047|consen 212 LWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT---VMTVRDFTQ 286 (835)
T ss_pred HHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh---heehhhHHH
Confidence 666665555544332 2233344444332 123 356888999999999999999999888654 344444555
Q ss_pred HHHHHHhcC----------------------ChhHHHHHHHHHHhCC-----------CCCCHHhHHHHHHHHHccCChH
Q 015726 188 VIKSFCESG----------------------DSSSVYSILAEMRRKS-----------IRPNATDFGLLLAGFYKEHKYE 234 (401)
Q Consensus 188 l~~~~~~~~----------------------~~~~a~~~~~~~~~~~-----------~~~~~~~~~~ll~~~~~~~~~~ 234 (401)
+.++|++-. +++-.+..|+.+...+ -+-+...|..-+. ...|+..
T Consensus 287 ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~ 364 (835)
T KOG2047|consen 287 IFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAA 364 (835)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChH
Confidence 555554321 1222333344433321 0112222322222 2345566
Q ss_pred HHHHHHHHHHHcCCCC------CchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC---HHHHHHHHHHHhcCCChHH
Q 015726 235 DVGKVLQMMEKCGIAS------GVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPN---LDTYKHLIHGFGKEGNLEG 305 (401)
Q Consensus 235 ~a~~~~~~~~~~~~~~------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~li~~~~~~~~~~~ 305 (401)
+...++.++.+. +.| -...|..+...|-..|+++.|..+|++..+-..+-- ..+|..-...=.+..+++.
T Consensus 365 ~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~ 443 (835)
T KOG2047|consen 365 EQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEA 443 (835)
T ss_pred HHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHH
Confidence 666777666553 222 134577777888888888888888887776533211 2344444444456667777
Q ss_pred HHHHHHHHHhCCCC----------C-------CHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 015726 306 AKKLFASMTNGGCE----------P-------DSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLA 368 (401)
Q Consensus 306 a~~~~~~m~~~~~~----------~-------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 368 (401)
|+++++.....--. | +...|...++.-...|-++....+++++++..+. ++.........+-
T Consensus 444 Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLE 522 (835)
T KOG2047|consen 444 ALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLE 522 (835)
T ss_pred HHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHH
Confidence 77777766532100 0 1233444455555566777777777777666532 2333333333344
Q ss_pred ccCCHHHHHHHHHHHHhcC
Q 015726 369 SISKVAEANELIGLMKKRF 387 (401)
Q Consensus 369 ~~g~~~~a~~~~~~~~~~~ 387 (401)
.+.-++++.+++++-...|
T Consensus 523 eh~yfeesFk~YErgI~LF 541 (835)
T KOG2047|consen 523 EHKYFEESFKAYERGISLF 541 (835)
T ss_pred hhHHHHHHHHHHHcCCccC
Confidence 4555666666666655553
No 84
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.04 E-value=3.8e-07 Score=74.33 Aligned_cols=292 Identities=13% Similarity=0.115 Sum_probs=197.7
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH-HHH
Q 015726 77 AFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNAL-LLG 155 (401)
Q Consensus 77 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~ 155 (401)
-+++.+..+.+..++++|++++....+.. +.+..-...+..+|.+..++..|...++++-.. -|...-|... ...
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQS 87 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHH
Confidence 46667777788889999999888766433 323456777788888889999999999988765 4555555433 456
Q ss_pred HHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHH--HHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCh
Q 015726 156 CILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKS--FCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKY 233 (401)
Q Consensus 156 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 233 (401)
+.+.+.+.+|+.+...|.+ .++...-..-+.+ ....+|+..+..++++....| +..+.........+.|++
T Consensus 88 LY~A~i~ADALrV~~~~~D----~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqy 160 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLD----NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQY 160 (459)
T ss_pred HHHhcccHHHHHHHHHhcC----CHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccH
Confidence 7778888899999888853 2333322222222 345678888888888876443 445555555566788999
Q ss_pred HHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-------------cCH-------------
Q 015726 234 EDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIK-------------PNL------------- 287 (401)
Q Consensus 234 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-------------p~~------------- 287 (401)
+.|.+-|+...+.+.-.....||..+.-| +.|+++.|++...++.++|++ ||+
T Consensus 161 EaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sa 239 (459)
T KOG4340|consen 161 EAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSA 239 (459)
T ss_pred HHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHH
Confidence 99999998887765444566777666544 568899999999988887653 121
Q ss_pred --HHHHHHHHHHhcCCChHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 015726 288 --DTYKHLIHGFGKEGNLEGAKKLFASMTNG-GCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLV 364 (401)
Q Consensus 288 --~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 364 (401)
..+|.-...+.+.|+++.|.+-+.+|.-. .-..|+.|...+.-.= ..+++-+..+-+.-+...+ +....||..++
T Consensus 240 l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlL 317 (459)
T KOG4340|consen 240 LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLL 317 (459)
T ss_pred HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHH
Confidence 12455566778889999999888888633 2344556655443221 2344444455455555554 34567888888
Q ss_pred HHHHccCCHHHHHHHHHH
Q 015726 365 TGLASISKVAEANELIGL 382 (401)
Q Consensus 365 ~~~~~~g~~~~a~~~~~~ 382 (401)
-.||+..-++.|-.++-+
T Consensus 318 llyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 318 LLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHhhhHHHhHHHHHHhh
Confidence 889998888888877654
No 85
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.02 E-value=3e-07 Score=89.15 Aligned_cols=227 Identities=15% Similarity=0.108 Sum_probs=129.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHH
Q 015726 112 RFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQ-----SVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYN 186 (401)
Q Consensus 112 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 186 (401)
..|-.-|..+...++.+.|.+++++.+.. +.+ -...|.++++.-...|.-+...++|++..+- --....|.
T Consensus 1459 i~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy---cd~~~V~~ 1534 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY---CDAYTVHL 1534 (1710)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh---cchHHHHH
Confidence 35555555666666666666666665542 111 1234555666555566666666666666321 11123456
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCC-CCchhHHHHHHHHHhc
Q 015726 187 KVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIA-SGVNVYNIRIQSLCKL 265 (401)
Q Consensus 187 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~ 265 (401)
.|...|.+.+..++|.++++.|.+. +.-....|...+..+.+.++-+.|..++.+..+.-.. .......-.+..-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 6666666666777777777776554 2334556666666666666666666666666554111 1233344445555566
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCH--hhHHHHHHHHHccCCHHHHHH
Q 015726 266 KRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDS--YCFFMFTYFLCQGGEYETALK 343 (401)
Q Consensus 266 ~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~ 343 (401)
|+.+++..+|+.....-.+ -...|+..++.-.++|+.+.+..+|++....++.|-. +.|...+..=-+.|+-+.++.
T Consensus 1614 GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred CCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHH
Confidence 7777777777766655322 3556666777666777777777777777766655542 345555554444455444333
Q ss_pred H
Q 015726 344 V 344 (401)
Q Consensus 344 ~ 344 (401)
+
T Consensus 1693 V 1693 (1710)
T KOG1070|consen 1693 V 1693 (1710)
T ss_pred H
Confidence 3
No 86
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.01 E-value=2.6e-06 Score=71.26 Aligned_cols=126 Identities=10% Similarity=0.062 Sum_probs=79.7
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhH-HHHHHHHHccCCHHHHH
Q 015726 264 KLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCF-FMFTYFLCQGGEYETAL 342 (401)
Q Consensus 264 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~li~~~~~~g~~~~a~ 342 (401)
-..++++.+-.++.+..--..-|... ..+.++++..|++.+|+++|-.+....++. ..+| ..+.++|.+.+.++.|.
T Consensus 371 L~~qFddVl~YlnSi~sYF~NdD~Fn-~N~AQAk~atgny~eaEelf~~is~~~ikn-~~~Y~s~LArCyi~nkkP~lAW 448 (557)
T KOG3785|consen 371 LSFQFDDVLTYLNSIESYFTNDDDFN-LNLAQAKLATGNYVEAEELFIRISGPEIKN-KILYKSMLARCYIRNKKPQLAW 448 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcchhh-hHHHHHHHHhcChHHHHHHHhhhcChhhhh-hHHHHHHHHHHHHhcCCchHHH
Confidence 33445555555554444322222222 346778888899999999997776554443 4455 45668889999999998
Q ss_pred HHHHHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcccch
Q 015726 343 KVCRASMAKGWVPHF-STMKSLVTGLASISKVAEANELIGLMKKRFPKSGDMWN 395 (401)
Q Consensus 343 ~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 395 (401)
.++-++. -+.+. .....+..-|.+.+.+--|-+.|+.+.. ..|++..|.
T Consensus 449 ~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~-lDP~pEnWe 498 (557)
T KOG3785|consen 449 DMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELEI-LDPTPENWE 498 (557)
T ss_pred HHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc-cCCCccccC
Confidence 8765443 22222 2344556778899998888888887754 445566563
No 87
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.99 E-value=1.8e-05 Score=72.93 Aligned_cols=138 Identities=14% Similarity=0.030 Sum_probs=107.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHH
Q 015726 255 YNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPD-SYCFFMFTYFLC 333 (401)
Q Consensus 255 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~ 333 (401)
|......+.+.++.++|...+.+.... .......|......+...|..++|.+.|...... .|+ ......+..++.
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~ll 729 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL--DPDHVPSMTALAELLL 729 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHHH
Confidence 444556667777788887777766554 2335566777777788889999999999888864 454 567889999999
Q ss_pred ccCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCc-ccchh
Q 015726 334 QGGEYETALK--VCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSG-DMWNA 396 (401)
Q Consensus 334 ~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~ 396 (401)
+.|+..-|.. ++..+.+.+ +.+...|..+...+.+.|+.++|.+-|....+..+.++ ..|..
T Consensus 730 e~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV~pFs~ 794 (799)
T KOG4162|consen 730 ELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPVLPFSN 794 (799)
T ss_pred HhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCcccccc
Confidence 9998888888 999999887 56889999999999999999999999999888754443 33443
No 88
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.94 E-value=1.1e-05 Score=81.32 Aligned_cols=310 Identities=8% Similarity=-0.041 Sum_probs=189.3
Q ss_pred HHHHHHhCCCchHHHHHHHHhhhC-CCC----CC--chhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH----HHH
Q 015726 81 AVSKLSQANHFNAISQLLEELKTR-PDL----RQ--NERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSV----DAL 149 (401)
Q Consensus 81 l~~~~~~~~~~~~a~~~~~~~~~~-~~~----~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~ 149 (401)
....+...|+++++..+++..... ... .+ .......+...+...|++++|...+++..+.-...+. ...
T Consensus 415 ~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~ 494 (903)
T PRK04841 415 QAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVAT 494 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 344556778888888888776521 110 11 1122222334556788999999988887653111121 234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhchhhcCC--CC--CHHhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCC--C-CHH
Q 015726 150 NALLLGCILSKNYEEVKRIFTEFPKVYGI--EP--NSETYNKVIKSFCESGDSSSVYSILAEMRRK----SIR--P-NAT 218 (401)
Q Consensus 150 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~ 218 (401)
+.+...+...|++++|...+++......- .+ ...++..+...+...|+++.|...+++.... +.. + ...
T Consensus 495 ~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 574 (903)
T PRK04841 495 SVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEF 574 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHH
Confidence 55556677789999988888877542110 11 1234455666778889999998888776442 211 1 122
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHcC--CCC--CchhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCcCHH--HH
Q 015726 219 DFGLLLAGFYKEHKYEDVGKVLQMMEKCG--IAS--GVNVYNIRIQSLCKLKRSEEAKALLDGMLSRG--IKPNLD--TY 290 (401)
Q Consensus 219 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~p~~~--~~ 290 (401)
.+..+...+...|++++|...+++..... ..+ ....+..+...+...|++++|...+++..... ...... ..
T Consensus 575 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 654 (903)
T PRK04841 575 LLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIAN 654 (903)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhH
Confidence 34455566777799999988887765421 111 12334445667778899999988888775421 111110 00
Q ss_pred --HHHHHHHhcCCChHHHHHHHHHHHhCCCCCCH---hhHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCC-CHHHH
Q 015726 291 --KHLIHGFGKEGNLEGAKKLFASMTNGGCEPDS---YCFFMFTYFLCQGGEYETALKVCRASMAK----GWVP-HFSTM 360 (401)
Q Consensus 291 --~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~ 360 (401)
...+..+...|+.+.|.+++............ ..+..+..++...|+.++|...+++.... |... ...+.
T Consensus 655 ~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~ 734 (903)
T PRK04841 655 ADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNL 734 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHH
Confidence 11224445578888888887765542211111 11345667788899999999999887664 3222 23456
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhcCCCC
Q 015726 361 KSLVTGLASISKVAEANELIGLMKKRFPKS 390 (401)
Q Consensus 361 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 390 (401)
..+..++.+.|+.++|...+.+..+...+.
T Consensus 735 ~~la~a~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 735 ILLNQLYWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhCcc
Confidence 677788899999999999999998875443
No 89
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=4.4e-06 Score=73.66 Aligned_cols=334 Identities=12% Similarity=0.073 Sum_probs=219.3
Q ss_pred HHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhh-CCCCCCchhHHHHHHHHHHhcC
Q 015726 47 ARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKT-RPDLRQNERFHVHSIVLYGQAN 125 (401)
Q Consensus 47 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~ 125 (401)
....+.|+++.|+..|-.+..- .|++-..|..-..+++..|++++|.+=-.+-.. .|.. ..-|.....++.-.|
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l--~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w---~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIML--SPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDW---AKGYSRKGAALFGLG 84 (539)
T ss_pred HhhcccccHHHHHHHHHHHHcc--CCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCch---hhHHHHhHHHHHhcc
Confidence 3456788999999999887644 344788999999999999999999887766653 3322 457889999999999
Q ss_pred ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc---CC-----------------------------------------
Q 015726 126 MIDHAMQTFEEMDKYGLRQSVDALNALLLGCILS---KN----------------------------------------- 161 (401)
Q Consensus 126 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~----------------------------------------- 161 (401)
++++|+.-|.+-++.. +.+...+.-+..++... ++
T Consensus 85 ~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred cHHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 9999999999988765 44555555555554111 00
Q ss_pred -------HHHHHHHHHhch----hh-------cCCCC------------CH----------HhHHHHHHHHHhcCChhHH
Q 015726 162 -------YEEVKRIFTEFP----KV-------YGIEP------------NS----------ETYNKVIKSFCESGDSSSV 201 (401)
Q Consensus 162 -------~~~a~~~~~~~~----~~-------~~~~~------------~~----------~~~~~l~~~~~~~~~~~~a 201 (401)
+..+.-.+.... .. .+..| |. .-..-+.++..+..+++.|
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a 243 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA 243 (539)
T ss_pred cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence 000111100000 00 00011 00 1133455556666777777
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHH-------HHHHhcCCHHHHHHH
Q 015726 202 YSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRI-------QSLCKLKRSEEAKAL 274 (401)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll-------~~~~~~~~~~~a~~~ 274 (401)
.+-+....... -+..-++....+|...|.+..+...-....+.|.. ...-|+.+. .+|.+.++++.+...
T Consensus 244 ~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~ 320 (539)
T KOG0548|consen 244 IQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKY 320 (539)
T ss_pred HHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHH
Confidence 77777776653 34555566667777888777777666666555432 222333333 355556778888888
Q ss_pred HHHHHHCCCCcCHHHH-------------------------HHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 015726 275 LDGMLSRGIKPNLDTY-------------------------KHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFT 329 (401)
Q Consensus 275 ~~~~~~~~~~p~~~~~-------------------------~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 329 (401)
|.+....-..|+..+= ..=...+.+.|++..|+..|.++++.. +-|...|....
T Consensus 321 ~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRA 399 (539)
T KOG0548|consen 321 YQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRA 399 (539)
T ss_pred HHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHH
Confidence 8776554333333221 111344667889999999999988875 45677888888
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCc
Q 015726 330 YFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSG 391 (401)
Q Consensus 330 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 391 (401)
-+|.+.|.+..|.+-.+..++.+ ++....|..-..++....++++|.+.|++.++..|.+.
T Consensus 400 ac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~ 460 (539)
T KOG0548|consen 400 ACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNA 460 (539)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhH
Confidence 99999999999998888877764 44455566666667777889999999999888776654
No 90
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.90 E-value=1.6e-05 Score=71.88 Aligned_cols=337 Identities=15% Similarity=0.142 Sum_probs=203.0
Q ss_pred HHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHH
Q 015726 41 KKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVL 120 (401)
Q Consensus 41 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 120 (401)
.+..++..+.. +++..-+.+.+......+-.++ +.....-.+...|+-++|.+...... .++... ...|..+.-.
T Consensus 10 lF~~~lk~yE~-kQYkkgLK~~~~iL~k~~eHge--slAmkGL~L~~lg~~~ea~~~vr~gl-r~d~~S-~vCwHv~gl~ 84 (700)
T KOG1156|consen 10 LFRRALKCYET-KQYKKGLKLIKQILKKFPEHGE--SLAMKGLTLNCLGKKEEAYELVRLGL-RNDLKS-HVCWHVLGLL 84 (700)
T ss_pred HHHHHHHHHHH-HHHHhHHHHHHHHHHhCCccch--hHHhccchhhcccchHHHHHHHHHHh-ccCccc-chhHHHHHHH
Confidence 45555555543 3456666666555543223233 44444445567789999999988877 344444 6678888888
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhH
Q 015726 121 YGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSS 200 (401)
Q Consensus 121 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 200 (401)
+....++++|++.|......+ +.|...|.-+.-.-++.|+++.......++.+.. +.....|..+..++.-.|+...
T Consensus 85 ~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~--~~~ra~w~~~Avs~~L~g~y~~ 161 (700)
T KOG1156|consen 85 QRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR--PSQRASWIGFAVAQHLLGEYKM 161 (700)
T ss_pred HhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--hhhHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999999887 6688888888777788889988888877776541 3344567888888888999999
Q ss_pred HHHHHHHHHhCC-CCCCHHhHHHHH------HHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHH
Q 015726 201 VYSILAEMRRKS-IRPNATDFGLLL------AGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKA 273 (401)
Q Consensus 201 a~~~~~~~~~~~-~~~~~~~~~~ll------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 273 (401)
|.+++++..+.. ..|+...+.-.. ......|..++|.+.+..-... +......-.+-...+.+.+++++|..
T Consensus 162 A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~ 240 (700)
T KOG1156|consen 162 ALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVK 240 (700)
T ss_pred HHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHH
Confidence 999999987764 245655544322 2233445555555444433222 11111112223344445555555555
Q ss_pred HHHHHHHCCCCcCHHHHHHHHH-HHhcCCC-----------------------------------hHHHHHHHHHHHhCC
Q 015726 274 LLDGMLSRGIKPNLDTYKHLIH-GFGKEGN-----------------------------------LEGAKKLFASMTNGG 317 (401)
Q Consensus 274 ~~~~~~~~~~~p~~~~~~~li~-~~~~~~~-----------------------------------~~~a~~~~~~m~~~~ 317 (401)
++..+... .||..-|..... ++.+..+ .+..-+++..+.+.|
T Consensus 241 ~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg 318 (700)
T KOG1156|consen 241 VYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKG 318 (700)
T ss_pred HHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcC
Confidence 55555544 233332221111 1110000 000011111111111
Q ss_pred C----------------------------------------------CCCHhhH--HHHHHHHHccCCHHHHHHHHHHHH
Q 015726 318 C----------------------------------------------EPDSYCF--FMFTYFLCQGGEYETALKVCRASM 349 (401)
Q Consensus 318 ~----------------------------------------------~~~~~~~--~~li~~~~~~g~~~~a~~~~~~~~ 349 (401)
+ +|....| ..++..+-..|+++.|..+++.++
T Consensus 319 ~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI 398 (700)
T KOG1156|consen 319 VPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI 398 (700)
T ss_pred CCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence 1 3343333 345666778899999999998888
Q ss_pred HCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC
Q 015726 350 AKGWVPH-FSTMKSLVTGLASISKVAEANELIGLMKKRFPKS 390 (401)
Q Consensus 350 ~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 390 (401)
++ .|+ +..|..-.+.+...|++++|...+++..+...+|
T Consensus 399 dH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aD 438 (700)
T KOG1156|consen 399 DH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTAD 438 (700)
T ss_pred cc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchh
Confidence 65 444 3556666788888899999999998888765444
No 91
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.87 E-value=4e-06 Score=70.18 Aligned_cols=328 Identities=9% Similarity=0.015 Sum_probs=168.4
Q ss_pred HHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcC
Q 015726 46 IARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQAN 125 (401)
Q Consensus 46 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 125 (401)
+.-+-...|+..|+.+++.......-. ...+---+..++-+.|++++|...+..+.... .++ ......+.-++.-.|
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EE-E~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~-~el~vnLAcc~FyLg 105 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREE-EDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAP-AELGVNLACCKFYLG 105 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhh-hHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCC-cccchhHHHHHHHHH
Confidence 455566778888888887654322111 11222335567788999999999999887533 333 456666776677778
Q ss_pred ChHHHHHHHHHHhhC--------------CCC-----------CCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCC
Q 015726 126 MIDHAMQTFEEMDKY--------------GLR-----------QSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEP 180 (401)
Q Consensus 126 ~~~~a~~~~~~~~~~--------------~~~-----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 180 (401)
.+.+|..+-....+. |-. .+...--+|.......-.+++|+++|...... .|
T Consensus 106 ~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d---n~ 182 (557)
T KOG3785|consen 106 QYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD---NP 182 (557)
T ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc---Ch
Confidence 888888766554321 000 00111112222222233567888888887644 56
Q ss_pred CHHhHHHHH-HHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHH--------------HHH
Q 015726 181 NSETYNKVI-KSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQM--------------MEK 245 (401)
Q Consensus 181 ~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~--------------~~~ 245 (401)
+-...|.-+ -+|.+..-++-+.+++.-..+. ++.+....+.......+.=.-..|++-.++ +.+
T Consensus 183 ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~r 261 (557)
T KOG3785|consen 183 EYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCR 261 (557)
T ss_pred hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHH
Confidence 666665544 4456666677777777766554 333333333333222221111111111111 111
Q ss_pred cCC------------CCC-----chhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH-----HhcCCCh
Q 015726 246 CGI------------ASG-----VNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHG-----FGKEGNL 303 (401)
Q Consensus 246 ~~~------------~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~-----~~~~~~~ 303 (401)
.++ -|. ...--.++-.|.+.+++.+|..+.+++.-. .|-......++.+ .......
T Consensus 262 HNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHl 339 (557)
T KOG3785|consen 262 HNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHL 339 (557)
T ss_pred cCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHH
Confidence 110 000 112233444567778888888877665432 2222222222111 1111122
Q ss_pred HHHHHHHHHHHhCCC------------------------------------CCCHhhHHHHHHHHHccCCHHHHHHHHHH
Q 015726 304 EGAKKLFASMTNGGC------------------------------------EPDSYCFFMFTYFLCQGGEYETALKVCRA 347 (401)
Q Consensus 304 ~~a~~~~~~m~~~~~------------------------------------~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 347 (401)
.-|.+.|+..-+++. ..|.+. -.+..+.+..|++.+|+++|-.
T Consensus 340 KiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn-~N~AQAk~atgny~eaEelf~~ 418 (557)
T KOG3785|consen 340 KIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFN-LNLAQAKLATGNYVEAEELFIR 418 (557)
T ss_pred HHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh-hHHHHHHHHhcChHHHHHHHhh
Confidence 233333333222221 122222 2345677778888888888866
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 015726 348 SMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLM 383 (401)
Q Consensus 348 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 383 (401)
.....++.+..-...|.+.|.+.+.++-|..++-++
T Consensus 419 is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 419 ISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred hcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 554444444444456667778888888777665443
No 92
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.86 E-value=3.8e-06 Score=81.90 Aligned_cols=245 Identities=13% Similarity=0.077 Sum_probs=179.7
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCH---HhHHHHHHHHHhcCChhHHHHHH
Q 015726 129 HAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNS---ETYNKVIKSFCESGDSSSVYSIL 205 (401)
Q Consensus 129 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~ 205 (401)
.|.+. +...... +.+...|-..|......++.++|.++.++.....++.-.. ..|.++++.-..-|.-+...++|
T Consensus 1443 saeDf-erlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1443 SAEDF-ERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred CHHHH-HHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHH
Confidence 34443 3333332 5567778888888999999999999999887654333322 35666666666667778888999
Q ss_pred HHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 015726 206 AEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKP 285 (401)
Q Consensus 206 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p 285 (401)
+++.+. ......|..|...|.+.+.+++|.++++.|.+. +......|...+..+.+.++-+.|..++.+..+.-.+-
T Consensus 1521 eRAcqy--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~ 1597 (1710)
T KOG1070|consen 1521 ERACQY--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQ 1597 (1710)
T ss_pred HHHHHh--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchh
Confidence 998775 223566888899999999999999999999776 33567789999999999999999999999887762221
Q ss_pred -CHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH--HHHHH
Q 015726 286 -NLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHF--STMKS 362 (401)
Q Consensus 286 -~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~ 362 (401)
........+..-.+.|+.+++..+|+..+..- +--...|+..|+.-.+.|+.+.+..+|++.+..++.|-- ..|..
T Consensus 1598 eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKk 1676 (1710)
T KOG1070|consen 1598 EHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKK 1676 (1710)
T ss_pred hhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHH
Confidence 12334444555568899999999999888763 234568999999999999999999999999998876643 45666
Q ss_pred HHHHHHccCCHHHHHHH
Q 015726 363 LVTGLASISKVAEANEL 379 (401)
Q Consensus 363 l~~~~~~~g~~~~a~~~ 379 (401)
.+..--.+|+-+.+..+
T Consensus 1677 wLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1677 WLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred HHHHHHhcCchhhHHHH
Confidence 66665666765544443
No 93
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.85 E-value=9.4e-07 Score=73.78 Aligned_cols=189 Identities=14% Similarity=0.090 Sum_probs=128.0
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---HHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCc--h
Q 015726 179 EPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPN---ATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGV--N 253 (401)
Q Consensus 179 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~ 253 (401)
+.....+..+...+.+.|+++.|...|+++.... +.+ ..++..+..++...|++++|...++.+.+....... .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 3455667778888889999999999999887652 222 246677788888999999999999998876422111 1
Q ss_pred hHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCcCH-HHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhh
Q 015726 254 VYNIRIQSLCKL--------KRSEEAKALLDGMLSRGIKPNL-DTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYC 324 (401)
Q Consensus 254 ~~~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 324 (401)
++..+..++... |++++|.+.|+.+.+.. |+. ..+..+..... ... .. ...
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~-------~~-------~~~ 168 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRN-------RL-------AGK 168 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHH-------HH-------HHH
Confidence 344445555543 67788888888887663 332 22222211100 000 00 011
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Q 015726 325 FFMFTYFLCQGGEYETALKVCRASMAKG--WVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFP 388 (401)
Q Consensus 325 ~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 388 (401)
...+...+.+.|++++|...+++..+.. -+.....+..+..++.+.|++++|..+++.+...+|
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 1245667889999999999999988763 123457888999999999999999999999988775
No 94
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.85 E-value=1.9e-06 Score=78.60 Aligned_cols=221 Identities=13% Similarity=0.050 Sum_probs=175.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHH
Q 015726 143 RQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGL 222 (401)
Q Consensus 143 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 222 (401)
+|-...-..+...+...|-...|..+|+++. .|.-++.+|+..|+..+|..+..+..+ -+||...|..
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle----------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~ 462 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE----------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCL 462 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH----------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHH
Confidence 4444455567778889999999999998873 377789999999999999999988877 3788999998
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCC
Q 015726 223 LLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGN 302 (401)
Q Consensus 223 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~ 302 (401)
+.+.....--+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.. ..-..+|.....+..+.++
T Consensus 463 LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEK 534 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhh
Confidence 888877777788888888765433 11112222334789999999998877663 2356788888888889999
Q ss_pred hHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 015726 303 LEGAKKLFASMTNGGCEP-DSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIG 381 (401)
Q Consensus 303 ~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 381 (401)
+..|.+.|..-... .| +...|+.+-.+|.+.|+-.+|...+.+..+.+ .-+..+|...+....+.|.+++|++.+.
T Consensus 535 ~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~ 611 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYH 611 (777)
T ss_pred hHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHH
Confidence 99999999988864 45 46789999999999999999999999999987 5566778888888889999999999999
Q ss_pred HHHhc
Q 015726 382 LMKKR 386 (401)
Q Consensus 382 ~~~~~ 386 (401)
++...
T Consensus 612 rll~~ 616 (777)
T KOG1128|consen 612 RLLDL 616 (777)
T ss_pred HHHHh
Confidence 88654
No 95
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=1.5e-05 Score=75.48 Aligned_cols=230 Identities=15% Similarity=0.158 Sum_probs=131.7
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChh
Q 015726 120 LYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSS 199 (401)
Q Consensus 120 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 199 (401)
.+...+-+++|..+|++.- .+....+.|+.- -+..+.|.+.-++.. ....|..+..+-.+.|.+.
T Consensus 1057 iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie~---i~~ldRA~efAe~~n-------~p~vWsqlakAQL~~~~v~ 1121 (1666)
T KOG0985|consen 1057 IAIENQLYEEAFAIFKKFD-----MNVSAIQVLIEN---IGSLDRAYEFAERCN-------EPAVWSQLAKAQLQGGLVK 1121 (1666)
T ss_pred HHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHHH---hhhHHHHHHHHHhhC-------ChHHHHHHHHHHHhcCchH
Confidence 3444455566666655542 244444444432 345555555554442 2346888888888888888
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015726 200 SVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGML 279 (401)
Q Consensus 200 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 279 (401)
+|.+-|-+. .|...|..+++...+.|.+++..+.+....+..-.|.. -+.++-+|++.++..+.++++.
T Consensus 1122 dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~--- 1190 (1666)
T KOG0985|consen 1122 DAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFIA--- 1190 (1666)
T ss_pred HHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHhc---
Confidence 888777552 36778888999999999999998888888777655544 4568888888888877665542
Q ss_pred HCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhC--------------------CCCCCHhhHHHHHHHHHccCCHH
Q 015726 280 SRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNG--------------------GCEPDSYCFFMFTYFLCQGGEYE 339 (401)
Q Consensus 280 ~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--------------------~~~~~~~~~~~li~~~~~~g~~~ 339 (401)
-||......+..-|...|.++.|.-+|...... ....+..||..+-.+|...+.+.
T Consensus 1191 ----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFr 1266 (1666)
T KOG0985|consen 1191 ----GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFR 1266 (1666)
T ss_pred ----CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhh
Confidence 344444444455555555555554444322100 00112233433333333333222
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 015726 340 TALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMK 384 (401)
Q Consensus 340 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 384 (401)
-| .|...++.....-..-++..|-..|-+++.+.+++...
T Consensus 1267 lA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1267 LA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred HH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 11 12222333344555666677777777777766666544
No 96
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.83 E-value=8.9e-07 Score=73.92 Aligned_cols=188 Identities=11% Similarity=0.009 Sum_probs=122.3
Q ss_pred CccHhHHHHHHHHHHhCCCchHHHHHHHHhhh-CCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH---H
Q 015726 72 PLDRMAFSIAVSKLSQANHFNAISQLLEELKT-RPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSV---D 147 (401)
Q Consensus 72 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~ 147 (401)
......+......+...|+++.|...|+++.. .|..+.....+..+..++...|++++|...++++.+... .+. .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP-NHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc-CCCchHH
Confidence 34556777788888889999999999988873 333232234667778888899999999999999887542 122 2
Q ss_pred HHHHHHHHHHhc--------CCHHHHHHHHHhchhhcCCCCCH-HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH
Q 015726 148 ALNALLLGCILS--------KNYEEVKRIFTEFPKVYGIEPNS-ETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNAT 218 (401)
Q Consensus 148 ~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 218 (401)
++..+..++... |+.++|.+.|+.+.+. .|+. ..+..+..... ... .. ..
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~~------~~--------~~ 167 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LRN------RL--------AG 167 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HHH------HH--------HH
Confidence 344455555544 6788888888888765 3443 22222211100 000 00 00
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHcCC--CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 015726 219 DFGLLLAGFYKEHKYEDVGKVLQMMEKCGI--ASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSR 281 (401)
Q Consensus 219 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 281 (401)
....+...+.+.|++++|...++...+... +.....+..+..++.+.|++++|..+++.+...
T Consensus 168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 168 KELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 112455667888889999888888877521 123467778888888899999998888887765
No 97
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.83 E-value=1.7e-06 Score=76.90 Aligned_cols=252 Identities=12% Similarity=0.058 Sum_probs=180.9
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChh
Q 015726 120 LYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSS 199 (401)
Q Consensus 120 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 199 (401)
-+.+.|++.+|.-.|+..++.+ +-+...|..|...-...++-..|+..+.+..+-. +-|....-.|.-.|...|.-.
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld--P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD--PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC--CccHHHHHHHHHHHhhhhhHH
Confidence 3457888999999999888876 6678899988888888888888998888887542 445567788888899999888
Q ss_pred HHHHHHHHHHhCCCC--------CCHHhHHHHHHHHHccCChHHHHHHHHHH-HHcCCCCCchhHHHHHHHHHhcCCHHH
Q 015726 200 SVYSILAEMRRKSIR--------PNATDFGLLLAGFYKEHKYEDVGKVLQMM-EKCGIASGVNVYNIRIQSLCKLKRSEE 270 (401)
Q Consensus 200 ~a~~~~~~~~~~~~~--------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~ll~~~~~~~~~~~ 270 (401)
.|++.++..+....+ ++...-.. ..+..........++|-++ ...+..+|..+...|--.|.-.|++++
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 999999887554211 00000000 1112222334445555444 444545677788888888889999999
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHccCCHHHHHHHHHHHH
Q 015726 271 AKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDS-YCFFMFTYFLCQGGEYETALKVCRASM 349 (401)
Q Consensus 271 a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~ 349 (401)
|.+.|+....... -|...||.|...++...+.++|+..|++.++. +|+- ....-|.-.|...|.+++|.+.|-.++
T Consensus 449 aiDcf~~AL~v~P-nd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 449 AVDCFEAALQVKP-NDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHhcCC-chHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 9999999888632 25788999999999999999999999999984 6763 344556677889999999999887655
Q ss_pred HCC---------CCCCHHHHHHHHHHHHccCCHHHHHHH
Q 015726 350 AKG---------WVPHFSTMKSLVTGLASISKVAEANEL 379 (401)
Q Consensus 350 ~~~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~ 379 (401)
... ..++..+|..|=.++.-.++.+-+.++
T Consensus 526 ~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 526 SMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 431 122345777777777777777655544
No 98
>PLN02789 farnesyltranstransferase
Probab=98.83 E-value=8.6e-06 Score=70.32 Aligned_cols=142 Identities=8% Similarity=-0.026 Sum_probs=70.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHH
Q 015726 115 VHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSK-NYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFC 193 (401)
Q Consensus 115 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 193 (401)
..+-..+...++.++|+.+++++++.. +-+..+|+.-..++...| ++++++..++++.+.. +.+..+|+.....+.
T Consensus 41 ~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n--pknyqaW~~R~~~l~ 117 (320)
T PLN02789 41 DYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN--PKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC--CcchHHhHHHHHHHH
Confidence 333344455566666666666666553 333444554444444444 4566666666665432 333344544433334
Q ss_pred hcCCh--hHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHH
Q 015726 194 ESGDS--SSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQS 261 (401)
Q Consensus 194 ~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 261 (401)
+.|+. ++++.+++++.+.. +-+..+|+...-++...|+++++++.++++.+.+. .+...|+....+
T Consensus 118 ~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~v 185 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFV 185 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHH
Confidence 44432 44555555555442 23455555555555555555555555555555442 233344444333
No 99
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.82 E-value=5.5e-05 Score=69.82 Aligned_cols=343 Identities=13% Similarity=0.058 Sum_probs=192.9
Q ss_pred HHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHH-hcCC
Q 015726 48 RLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYG-QANM 126 (401)
Q Consensus 48 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~-~~~~ 126 (401)
.+...|+++.+.+.|+.... ........|..+...+...|.-..|+.+++........+++...+...-..|. +.+.
T Consensus 332 al~~~g~f~~lae~fE~~~~--~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~ 409 (799)
T KOG4162|consen 332 ALSRCGQFEVLAEQFEQALP--FSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKL 409 (799)
T ss_pred HHHHHHHHHHHHHHHHHHhH--hhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhh
Confidence 33444555555555555432 23334456666666666666666666666655422222332333333333343 3455
Q ss_pred hHHHHHHHHHHhhC--CC--CCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHhchhhcCCCCCHHhHHHHHHH
Q 015726 127 IDHAMQTFEEMDKY--GL--RQSVDALNALLLGCILS-----------KNYEEVKRIFTEFPKVYGIEPNSETYNKVIKS 191 (401)
Q Consensus 127 ~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 191 (401)
.++++++-.+.... +. ......|..+.-+|... ....++++.+++..+..+..|+..- .+.--
T Consensus 410 ~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if--~lalq 487 (799)
T KOG4162|consen 410 VEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIF--YLALQ 487 (799)
T ss_pred hhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHH--HHHHH
Confidence 55555555555441 10 11222333333333211 1134566666666544333343332 33344
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHH
Q 015726 192 FCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEA 271 (401)
Q Consensus 192 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 271 (401)
|+..++++.|.+...+..+-+...+...|..+.-.+...+++.+|+.+.+...+.- +.|......-+..-...++.+++
T Consensus 488 ~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i~~~~~~~e~~ 566 (799)
T KOG4162|consen 488 YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHIELTFNDREEA 566 (799)
T ss_pred HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhhhhhcccHHHH
Confidence 56678888888888888887666678888888888888888888888887664431 11100000001111111222222
Q ss_pred HHHHHHHH---------------------------------------------------HCC-----------CCcC---
Q 015726 272 KALLDGML---------------------------------------------------SRG-----------IKPN--- 286 (401)
Q Consensus 272 ~~~~~~~~---------------------------------------------------~~~-----------~~p~--- 286 (401)
......+. ..| ..|+
T Consensus 567 l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~ 646 (799)
T KOG4162|consen 567 LDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLW 646 (799)
T ss_pred HHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchH
Confidence 11111110 000 0111
Q ss_pred ---HHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 015726 287 ---LDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSL 363 (401)
Q Consensus 287 ---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 363 (401)
...|......+.+.++.++|...+.+..+.. ......|......+...|..++|.+.|......+ +-++....++
T Consensus 647 ~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Al 724 (799)
T KOG4162|consen 647 YLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTAL 724 (799)
T ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHH
Confidence 1123344555667777788877777766542 3345566666677888999999999999888765 4466788899
Q ss_pred HHHHHccCCHHHHHH--HHHHHHhcCCCCcccchhc
Q 015726 364 VTGLASISKVAEANE--LIGLMKKRFPKSGDMWNAA 397 (401)
Q Consensus 364 ~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~l 397 (401)
...+.+.|+..-|.. ++..+.+..|.+...|-.|
T Consensus 725 a~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~L 760 (799)
T KOG4162|consen 725 AELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYL 760 (799)
T ss_pred HHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 999999998777777 9999999999999988643
No 100
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=4.2e-05 Score=68.45 Aligned_cols=196 Identities=8% Similarity=0.067 Sum_probs=132.9
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 015726 78 FSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCI 157 (401)
Q Consensus 78 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 157 (401)
.-+=++.+...|++++|++...++.... |.+...+..-+.+..+.++|++|+.+.+.-... ..+..-+..=..+..
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEY 90 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHH
Confidence 3344577889999999999999998443 555677788888889999999999666543321 111111112233445
Q ss_pred hcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC----------------------
Q 015726 158 LSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRP---------------------- 215 (401)
Q Consensus 158 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------------- 215 (401)
+.+..++|+..++-.. +-+..+...-...+.+.|++++|+.+|+.+.+.+.+.
T Consensus 91 rlnk~Dealk~~~~~~-----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q 165 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLD-----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQ 165 (652)
T ss_pred HcccHHHHHHHHhccc-----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHH
Confidence 7899999999998542 3344466667788899999999999999986653221
Q ss_pred -----CHHhHHHHH---HHHHccCChHHHHHHHHHHHHcC--------CC-----CCc-hhHHHHHHHHHhcCCHHHHHH
Q 015726 216 -----NATDFGLLL---AGFYKEHKYEDVGKVLQMMEKCG--------IA-----SGV-NVYNIRIQSLCKLKRSEEAKA 273 (401)
Q Consensus 216 -----~~~~~~~ll---~~~~~~~~~~~a~~~~~~~~~~~--------~~-----~~~-~~~~~ll~~~~~~~~~~~a~~ 273 (401)
...+|..+. ..+...|++.+|+++++...+.+ .. ... .+--.+..++-..|+.++|..
T Consensus 166 ~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~ 245 (652)
T KOG2376|consen 166 SVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASS 245 (652)
T ss_pred hccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 112344333 34567799999999998883221 01 011 123345566778899999999
Q ss_pred HHHHHHHCC
Q 015726 274 LLDGMLSRG 282 (401)
Q Consensus 274 ~~~~~~~~~ 282 (401)
++..+.+..
T Consensus 246 iy~~~i~~~ 254 (652)
T KOG2376|consen 246 IYVDIIKRN 254 (652)
T ss_pred HHHHHHHhc
Confidence 999988774
No 101
>PLN02789 farnesyltranstransferase
Probab=98.81 E-value=1.6e-05 Score=68.60 Aligned_cols=207 Identities=5% Similarity=-0.052 Sum_probs=101.2
Q ss_pred HHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcC-ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC--
Q 015726 85 LSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQAN-MIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKN-- 161 (401)
Q Consensus 85 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 161 (401)
+...++.++|+.+.+++.... |.+..+|+.--.++...| ++++++..++++.+.. +.+..+|+.....+.+.|.
T Consensus 47 l~~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchh
Confidence 344455555555555555221 222234443333344444 3566666666655544 3344455544434444443
Q ss_pred HHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcc---CCh----H
Q 015726 162 YEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKE---HKY----E 234 (401)
Q Consensus 162 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---~~~----~ 234 (401)
.++++.+++++.+.. +-|..+|+...-.+.+.|+++++++.++++++.+. -|...|+.....+.+. |+. +
T Consensus 124 ~~~el~~~~kal~~d--pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~~~~~e 200 (320)
T PLN02789 124 ANKELEFTRKILSLD--AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGGLEAMRD 200 (320)
T ss_pred hHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccccccccHH
Confidence 244555555555432 34455566555555566666666666666665532 2444444444333332 111 3
Q ss_pred HHHHHHHHHHHcCCCCCchhHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhc
Q 015726 235 DVGKVLQMMEKCGIASGVNVYNIRIQSLCKL----KRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGK 299 (401)
Q Consensus 235 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 299 (401)
+......++.... +.+...|+.+...+... ++..+|.+.+.+..+.++ .+......|+..|+.
T Consensus 201 ~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~ 267 (320)
T PLN02789 201 SELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHHh
Confidence 4444454555443 34556666666666552 233456666666554432 244555555555553
No 102
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.81 E-value=1.9e-06 Score=69.19 Aligned_cols=120 Identities=9% Similarity=0.073 Sum_probs=68.1
Q ss_pred cCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH-HhcCCC--hHHH
Q 015726 230 EHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHG-FGKEGN--LEGA 306 (401)
Q Consensus 230 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~-~~~~~~--~~~a 306 (401)
.++.+++...++...+.+ +.+...|..+...|...|++++|...|++..+.... +...+..+..+ +...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence 445555555555555543 345556666666666666666666666666665322 44555555554 244454 3666
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 015726 307 KKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKG 352 (401)
Q Consensus 307 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 352 (401)
.+++++..+.+ +-+...+..+...+...|++++|...|+++.+..
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 66666666543 2244555555666666666666666666666553
No 103
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=1.5e-05 Score=64.28 Aligned_cols=86 Identities=15% Similarity=0.154 Sum_probs=37.3
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCC
Q 015726 227 FYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCK----LKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGN 302 (401)
Q Consensus 227 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~ 302 (401)
+.+..+.+-|.+.++.|.+.. +..|.+.+..++.+ .+.+.+|.-+|++|-++ ..|+..+.+-...++...|+
T Consensus 147 ~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcC
Confidence 334444444444444444421 23333333333332 23344444444444433 23444444444444444444
Q ss_pred hHHHHHHHHHHHhC
Q 015726 303 LEGAKKLFASMTNG 316 (401)
Q Consensus 303 ~~~a~~~~~~m~~~ 316 (401)
+++|..++++.+..
T Consensus 223 ~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 223 YEEAESLLEEALDK 236 (299)
T ss_pred HHHHHHHHHHHHhc
Confidence 44444444444443
No 104
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.80 E-value=8.9e-05 Score=65.81 Aligned_cols=156 Identities=10% Similarity=0.049 Sum_probs=119.3
Q ss_pred hHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHhcCCChHHHHHHHH
Q 015726 233 YEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKP-NLDTYKHLIHGFGKEGNLEGAKKLFA 311 (401)
Q Consensus 233 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~ 311 (401)
.+....+++++...-...-..+|-.++....+..-++.|..+|.+..+.+..+ ++..+++++..|| .++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 33444444444333212223467778888888888999999999999988776 7788899999886 578999999998
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Q 015726 312 SMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPH--FSTMKSLVTGLASISKVAEANELIGLMKKRFPK 389 (401)
Q Consensus 312 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 389 (401)
--++. ...++.--...+..+...++-..+..+|++....++.++ ...|..++.-=..-|+.+.+.++-+++...+|.
T Consensus 426 LGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~ 504 (656)
T KOG1914|consen 426 LGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPA 504 (656)
T ss_pred HHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcch
Confidence 86654 123344446678888889999999999999999866554 478999999999999999999999998888774
Q ss_pred C
Q 015726 390 S 390 (401)
Q Consensus 390 ~ 390 (401)
+
T Consensus 505 ~ 505 (656)
T KOG1914|consen 505 D 505 (656)
T ss_pred h
Confidence 3
No 105
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=1.1e-05 Score=64.87 Aligned_cols=255 Identities=16% Similarity=0.173 Sum_probs=153.2
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCC
Q 015726 118 IVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGD 197 (401)
Q Consensus 118 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 197 (401)
++-+.-.|.+..++..-...... +.+...-.-+.++|...|++.... .++.. |-.|.......+.......++
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~---~eI~~--~~~~~lqAvr~~a~~~~~e~~ 87 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVI---SEIKE--GKATPLQAVRLLAEYLELESN 87 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHcccccccc---ccccc--ccCChHHHHHHHHHHhhCcch
Confidence 34455567777776655554332 123333344556677677654433 33321 214444444444444444444
Q ss_pred hhHHH-HHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHH
Q 015726 198 SSSVY-SILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLD 276 (401)
Q Consensus 198 ~~~a~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 276 (401)
.++-. ++.+.+.......+......-...|++.|++++|++...... +....-.=+..+.+..+++.|.+.++
T Consensus 88 ~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk 161 (299)
T KOG3081|consen 88 KKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELK 161 (299)
T ss_pred hHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433 344444444333333444444556788888888888776521 22233333455567778888888888
Q ss_pred HHHHCCCCcCHHHHHHHHHHHhc----CCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 015726 277 GMLSRGIKPNLDTYKHLIHGFGK----EGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKG 352 (401)
Q Consensus 277 ~~~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 352 (401)
+|.+-. +..|.+-|..++.+ .+.+..|.-+|++|-+. ..|+..+.+....++...|++++|..++++...+.
T Consensus 162 ~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 162 KMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred HHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 888752 55666666655543 45688888888888764 46888888888888888888888888888888875
Q ss_pred CCCCHHHHHHHHHHHHccCCH-HHHHHHHHHHHhcCCCC
Q 015726 353 WVPHFSTMKSLVTGLASISKV-AEANELIGLMKKRFPKS 390 (401)
Q Consensus 353 ~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~ 390 (401)
..++.+...++-.-...|.. +-..+.+.++....|..
T Consensus 238 -~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h 275 (299)
T KOG3081|consen 238 -AKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEH 275 (299)
T ss_pred -CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcc
Confidence 34566666666555555654 44456677776655543
No 106
>PF12854 PPR_1: PPR repeat
Probab=98.80 E-value=7.8e-09 Score=56.24 Aligned_cols=31 Identities=39% Similarity=0.721 Sum_probs=13.1
Q ss_pred CCcCHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 015726 283 IKPNLDTYKHLIHGFGKEGNLEGAKKLFASM 313 (401)
Q Consensus 283 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 313 (401)
+.||..||++||.+|++.|++++|.++|++|
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 3444444444444444444444444444433
No 107
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.78 E-value=4.1e-05 Score=69.27 Aligned_cols=327 Identities=10% Similarity=0.038 Sum_probs=171.9
Q ss_pred HHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCC
Q 015726 47 ARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANM 126 (401)
Q Consensus 47 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 126 (401)
+.+..+++..+....|+.+...-++..-...|...+.-....|-++.++.+++...... +..-+--|..++..++
T Consensus 110 q~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~-----P~~~eeyie~L~~~d~ 184 (835)
T KOG2047|consen 110 QFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA-----PEAREEYIEYLAKSDR 184 (835)
T ss_pred HHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC-----HHHHHHHHHHHHhccc
Confidence 44444444444444444443332222223345555555555566666666666555221 1224445556666666
Q ss_pred hHHHHHHHHHHhhCC------CCCCHHHHHHHHHHHHhcCCHH---HHHHHHHhchhhcCCCCCH--HhHHHHHHHHHhc
Q 015726 127 IDHAMQTFEEMDKYG------LRQSVDALNALLLGCILSKNYE---EVKRIFTEFPKVYGIEPNS--ETYNKVIKSFCES 195 (401)
Q Consensus 127 ~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~ 195 (401)
+++|.+.+....... .+.+...|.-+-+...+.-+.- ....+++.+... -+|. ..|.+|.+-|.+.
T Consensus 185 ~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r---ftDq~g~Lw~SLAdYYIr~ 261 (835)
T KOG2047|consen 185 LDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR---FTDQLGFLWCSLADYYIRS 261 (835)
T ss_pred hHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc---CcHHHHHHHHHHHHHHHHh
Confidence 666666666554311 1334445555544444332221 223333333322 3443 3577888888888
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccC----------------------ChHHHHHHHHHHHHcCC-----
Q 015726 196 GDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEH----------------------KYEDVGKVLQMMEKCGI----- 248 (401)
Q Consensus 196 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----------------------~~~~a~~~~~~~~~~~~----- 248 (401)
|.+++|..+|++.... ..+..-|..+.++|+.-. +++-...-|+.+.+.+.
T Consensus 262 g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNs 339 (835)
T KOG2047|consen 262 GLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNS 339 (835)
T ss_pred hhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHH
Confidence 8888888888887654 223334444444443211 11222233333333210
Q ss_pred ------CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc------CHHHHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 015726 249 ------ASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKP------NLDTYKHLIHGFGKEGNLEGAKKLFASMTNG 316 (401)
Q Consensus 249 ------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 316 (401)
+.++..|..-+. ...|+..+-...+.+..+. +.| -...|..+...|-..|+.+.|..+|++..+-
T Consensus 340 VlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V 416 (835)
T KOG2047|consen 340 VLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKV 416 (835)
T ss_pred HHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcC
Confidence 112222322222 2345666667777766654 222 1245677777788888888888888887764
Q ss_pred CCCCC---HhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-----------------CCHHHHHHHHHHHHccCCHHHH
Q 015726 317 GCEPD---SYCFFMFTYFLCQGGEYETALKVCRASMAKGWV-----------------PHFSTMKSLVTGLASISKVAEA 376 (401)
Q Consensus 317 ~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-----------------~~~~~~~~l~~~~~~~g~~~~a 376 (401)
..+-- ..+|......=.+..+++.|.++++++...--. .+...|..+++.--..|-++..
T Consensus 417 ~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfest 496 (835)
T KOG2047|consen 417 PYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFEST 496 (835)
T ss_pred CccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHH
Confidence 32221 345555555556677788888877765432111 1234555666666667778888
Q ss_pred HHHHHHHHhc
Q 015726 377 NELIGLMKKR 386 (401)
Q Consensus 377 ~~~~~~~~~~ 386 (401)
..+++++.+.
T Consensus 497 k~vYdriidL 506 (835)
T KOG2047|consen 497 KAVYDRIIDL 506 (835)
T ss_pred HHHHHHHHHH
Confidence 8888887765
No 108
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.77 E-value=6.2e-05 Score=76.07 Aligned_cols=340 Identities=12% Similarity=0.033 Sum_probs=206.0
Q ss_pred HHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHH
Q 015726 42 KRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLY 121 (401)
Q Consensus 42 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 121 (401)
...+...+...+++..|+......... ..-..............|+++.+..+++.+.... ...+..........+
T Consensus 344 h~raa~~~~~~g~~~~Al~~a~~a~d~---~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~-~~~~~~l~~~~a~~~ 419 (903)
T PRK04841 344 HRAAAEAWLAQGFPSEAIHHALAAGDA---QLLRDILLQHGWSLFNQGELSLLEECLNALPWEV-LLENPRLVLLQAWLA 419 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCCH---HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHH-HhcCcchHHHHHHHH
Confidence 344455566677777777665544221 1111222233344566788888888877653110 011122333445556
Q ss_pred HhcCChHHHHHHHHHHhhCCC------CCC--HHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCC----HHhHHHHH
Q 015726 122 GQANMIDHAMQTFEEMDKYGL------RQS--VDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPN----SETYNKVI 189 (401)
Q Consensus 122 ~~~~~~~~a~~~~~~~~~~~~------~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~ 189 (401)
...|+++++..++....+.-- .+. ......+...+...|++++|...+++..+... ..+ ....+.+.
T Consensus 420 ~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~lg 498 (903)
T PRK04841 420 QSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELP-LTWYYSRIVATSVLG 498 (903)
T ss_pred HHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CccHHHHHHHHHHHH
Confidence 688999999999987754210 111 11222233456688999999999988754311 111 12445666
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCC---CCC--HHhHHHHHHHHHccCChHHHHHHHHHHHHc----CCCC---CchhHHH
Q 015726 190 KSFCESGDSSSVYSILAEMRRKSI---RPN--ATDFGLLLAGFYKEHKYEDVGKVLQMMEKC----GIAS---GVNVYNI 257 (401)
Q Consensus 190 ~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~ 257 (401)
..+...|++++|...+++.....- .+. ..++..+...+...|++++|...+++.... +... ....+..
T Consensus 499 ~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 578 (903)
T PRK04841 499 EVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRI 578 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHH
Confidence 677889999999999988764211 111 234455667788999999999998876542 2111 1233445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC--CCc--CHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCC-CCHhhH-----HH
Q 015726 258 RIQSLCKLKRSEEAKALLDGMLSRG--IKP--NLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCE-PDSYCF-----FM 327 (401)
Q Consensus 258 ll~~~~~~~~~~~a~~~~~~~~~~~--~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~-----~~ 327 (401)
+...+...|++++|...+.+..... ..+ ....+..+...+...|++++|.+.+......... .....+ ..
T Consensus 579 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~ 658 (903)
T PRK04841 579 RAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKV 658 (903)
T ss_pred HHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHH
Confidence 5666777899999999998875531 112 2344555666778899999999999887542101 111111 11
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 015726 328 FTYFLCQGGEYETALKVCRASMAKGWVPH---FSTMKSLVTGLASISKVAEANELIGLMKKR 386 (401)
Q Consensus 328 li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 386 (401)
.+..+...|+.+.|.+++........... ...+..+..++...|+.++|...+++....
T Consensus 659 ~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 659 RLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 22444568999999999876554321111 112456777888999999999999988765
No 109
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.75 E-value=1.7e-06 Score=78.93 Aligned_cols=239 Identities=11% Similarity=-0.014 Sum_probs=174.6
Q ss_pred CCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHH
Q 015726 70 ESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDAL 149 (401)
Q Consensus 70 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 149 (401)
..+|--..-..+...+...|-...|..+++.+. .+..+|.+|...|+-.+|..+..+..+. +|+...|
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle----------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~ly 460 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE----------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLY 460 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH----------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhH
Confidence 344444455566778888899999999998864 5777889999999999999988887773 7889999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc
Q 015726 150 NALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYK 229 (401)
Q Consensus 150 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 229 (401)
..+.+......-+++|.++.+..... +-..+.....+.++++++.+.|+.-.+.. +....+|-....+..+
T Consensus 461 c~LGDv~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALq 531 (777)
T KOG1128|consen 461 CLLGDVLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQ 531 (777)
T ss_pred HHhhhhccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHH
Confidence 98888887777788888888776432 22222223344688888888888876653 4466778888888888
Q ss_pred cCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHH
Q 015726 230 EHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKL 309 (401)
Q Consensus 230 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~ 309 (401)
.+++..+.+.|....... +-+...||.+-.+|.+.|+..+|...+.+..+.+ .-+...|...+....+.|.+++|.+.
T Consensus 532 lek~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A 609 (777)
T KOG1128|consen 532 LEKEQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKA 609 (777)
T ss_pred HhhhHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHH
Confidence 888888888888877653 3356788999999999999999999998888776 33455566666666788899999988
Q ss_pred HHHHHhCC-CCCCHhhHHHHHHH
Q 015726 310 FASMTNGG-CEPDSYCFFMFTYF 331 (401)
Q Consensus 310 ~~~m~~~~-~~~~~~~~~~li~~ 331 (401)
+.++.... ..-|......++..
T Consensus 610 ~~rll~~~~~~~d~~vl~~iv~~ 632 (777)
T KOG1128|consen 610 YHRLLDLRKKYKDDEVLLIIVRT 632 (777)
T ss_pred HHHHHHhhhhcccchhhHHHHHH
Confidence 88877541 11244444444443
No 110
>PF12854 PPR_1: PPR repeat
Probab=98.74 E-value=1.4e-08 Score=55.18 Aligned_cols=32 Identities=34% Similarity=0.829 Sum_probs=15.6
Q ss_pred CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 015726 177 GIEPNSETYNKVIKSFCESGDSSSVYSILAEM 208 (401)
Q Consensus 177 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 208 (401)
|+.||..+|++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444445555555555555555555444444
No 111
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.73 E-value=5.8e-06 Score=75.71 Aligned_cols=263 Identities=14% Similarity=0.131 Sum_probs=142.5
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 015726 78 FSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCI 157 (401)
Q Consensus 78 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 157 (401)
-.+.+.++...|+-++|-++-+. .++ -...|..|.+.|.+..|.+....=.. +..|......+..+++
T Consensus 592 k~sy~q~l~dt~qd~ka~elk~s---dgd-------~laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~ali 659 (1636)
T KOG3616|consen 592 KRSYLQALMDTGQDEKAAELKES---DGD-------GLAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALI 659 (1636)
T ss_pred HHHHHHHHHhcCchhhhhhhccc---cCc-------cHHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHH
Confidence 33445555555555555443211 111 23457778888887777665432211 1345555666666666
Q ss_pred hcCCHHHHHHHHHhchhh------------c---------CCCCCHHhH-HHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 015726 158 LSKNYEEVKRIFTEFPKV------------Y---------GIEPNSETY-NKVIKSFCESGDSSSVYSILAEMRRKSIRP 215 (401)
Q Consensus 158 ~~~~~~~a~~~~~~~~~~------------~---------~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 215 (401)
+..-+++|-++|+++..- + ..+..+.+. ......+...|+++.|...|-+..
T Consensus 660 k~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~------ 733 (1636)
T KOG3616|consen 660 KGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN------ 733 (1636)
T ss_pred hhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh------
Confidence 665666666666655310 0 000000000 011112222333333333332211
Q ss_pred CHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 015726 216 NATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIH 295 (401)
Q Consensus 216 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 295 (401)
.....+.+......|.+|+.+++.+.+... -..-|..+.+-|+..|+++.|.++|-+.- .++-.|.
T Consensus 734 ---~~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~ 799 (1636)
T KOG3616|consen 734 ---CLIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAID 799 (1636)
T ss_pred ---hHHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHH
Confidence 011234445566677777777777776542 23346677777888888888887775432 2344567
Q ss_pred HHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 015726 296 GFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAE 375 (401)
Q Consensus 296 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 375 (401)
.|.+.|+++.|.++-.+.. |.......|..-..-+-+.|++.+|.+++-.. | .|+. -|..|-+.|..++
T Consensus 800 my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti---~-~p~~-----aiqmydk~~~~dd 868 (1636)
T KOG3616|consen 800 MYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITI---G-EPDK-----AIQMYDKHGLDDD 868 (1636)
T ss_pred HHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEc---c-CchH-----HHHHHHhhCcchH
Confidence 7788888888877765543 22334455655566667777777777776432 2 3432 3677888888888
Q ss_pred HHHHHHHH
Q 015726 376 ANELIGLM 383 (401)
Q Consensus 376 a~~~~~~~ 383 (401)
.+++.++-
T Consensus 869 mirlv~k~ 876 (1636)
T KOG3616|consen 869 MIRLVEKH 876 (1636)
T ss_pred HHHHHHHh
Confidence 87776653
No 112
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.73 E-value=8e-07 Score=67.50 Aligned_cols=101 Identities=13% Similarity=-0.043 Sum_probs=51.6
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 015726 292 HLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASIS 371 (401)
Q Consensus 292 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 371 (401)
.+...+...|++++|...|+...... +.+...|..+..++...|++++|...|++....+ +.+...+..+..++...|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC
Confidence 33444455555555555555555432 2234445555555555555555555555555443 334455555555555555
Q ss_pred CHHHHHHHHHHHHhcCCCCcccc
Q 015726 372 KVAEANELIGLMKKRFPKSGDMW 394 (401)
Q Consensus 372 ~~~~a~~~~~~~~~~~~~~~~~~ 394 (401)
++++|...|+...+..|.+...|
T Consensus 107 ~~~eAi~~~~~Al~~~p~~~~~~ 129 (144)
T PRK15359 107 EPGLAREAFQTAIKMSYADASWS 129 (144)
T ss_pred CHHHHHHHHHHHHHhCCCChHHH
Confidence 55555555555555554444433
No 113
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.72 E-value=0.0001 Score=61.82 Aligned_cols=300 Identities=12% Similarity=0.093 Sum_probs=212.5
Q ss_pred HHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhh-CCCCCCchhHHHHHHH
Q 015726 41 KKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKT-RPDLRQNERFHVHSIV 119 (401)
Q Consensus 41 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~li~ 119 (401)
....+-..+...++...|+..+..+..- .|.+-.++..-...|...|+-..|+.=+..... .|++.. ....-..
T Consensus 40 khlElGk~lla~~Q~sDALt~yHaAve~--dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~---ARiQRg~ 114 (504)
T KOG0624|consen 40 KHLELGKELLARGQLSDALTHYHAAVEG--DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMA---ARIQRGV 114 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcC--CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHH---HHHHhch
Confidence 3344556667778888999998887543 333444555556788899999999998888773 333222 1122234
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCC--HH------------HHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhH
Q 015726 120 LYGQANMIDHAMQTFEEMDKYGLRQS--VD------------ALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETY 185 (401)
Q Consensus 120 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 185 (401)
.+.+.|.++.|..-|+..++...... .. .....+..+...|+...|+.....+.+-. +-|...+
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~--~Wda~l~ 192 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ--PWDASLR 192 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC--cchhHHH
Confidence 57799999999999999988642111 11 12233455677899999999999997642 4567778
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchh----HHHH---
Q 015726 186 NKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNV----YNIR--- 258 (401)
Q Consensus 186 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l--- 258 (401)
..-..+|...|++..|+.-+....+.. ..+..++--+-..+...|+.+.++...++..+. .|+... |..+
T Consensus 193 ~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv 269 (504)
T KOG0624|consen 193 QARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKV 269 (504)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHH
Confidence 888899999999999998888776543 345666667778888999999999999888875 355422 2111
Q ss_pred ------HHHHHhcCCHHHHHHHHHHHHHCCCCcCH---HHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCC-HhhHHHH
Q 015726 259 ------IQSLCKLKRSEEAKALLDGMLSRGIKPNL---DTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPD-SYCFFMF 328 (401)
Q Consensus 259 ------l~~~~~~~~~~~a~~~~~~~~~~~~~p~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l 328 (401)
+......+++.++..-.+...+....... ..+..+-.++...+++.+|++...+.++. .|+ ..++.--
T Consensus 270 ~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dR 347 (504)
T KOG0624|consen 270 VKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDR 347 (504)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHHH
Confidence 12234457788888888887776433222 33455667778889999999999999875 454 7788888
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCC
Q 015726 329 TYFLCQGGEYETALKVCRASMAKG 352 (401)
Q Consensus 329 i~~~~~~g~~~~a~~~~~~~~~~~ 352 (401)
..+|.-...++.|+.-|+.+.+.+
T Consensus 348 AeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 348 AEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhcC
Confidence 889998899999999988887654
No 114
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.72 E-value=1.8e-06 Score=79.75 Aligned_cols=233 Identities=11% Similarity=0.097 Sum_probs=161.6
Q ss_pred HHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCC-------CCchhHHHHHHH
Q 015726 47 ARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDL-------RQNERFHVHSIV 119 (401)
Q Consensus 47 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~~~~~~li~ 119 (401)
+.+...|+-+.|..-++.+. +...|..+..+|.+..+++-|.-.+..|....+. ..+...-.....
T Consensus 736 SfyvtiG~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAv 808 (1416)
T KOG3617|consen 736 SFYVTIGSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAV 808 (1416)
T ss_pred eEEEEeccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHH
Confidence 44455666666666555442 4458999999999999999998888777622110 000122233344
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChh
Q 015726 120 LYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSS 199 (401)
Q Consensus 120 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 199 (401)
.....|.+++|+.+|.+-.+. ..|-..|-..|.|++|.++-+.= ++. -=..||......+-..+|.+
T Consensus 809 LAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~-DRi---HLr~Tyy~yA~~Lear~Di~ 875 (1416)
T KOG3617|consen 809 LAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETK-DRI---HLRNTYYNYAKYLEARRDIE 875 (1416)
T ss_pred HHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhc-cce---ehhhhHHHHHHHHHhhccHH
Confidence 456789999999999998753 33445677889999999987654 321 12345666666677788899
Q ss_pred HHHHHHHHH----------HhCC---------CCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHH
Q 015726 200 SVYSILAEM----------RRKS---------IRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQ 260 (401)
Q Consensus 200 ~a~~~~~~~----------~~~~---------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 260 (401)
.|++.|++. .... -..|...|......+-..|+++.|+.+|....+ |-.++.
T Consensus 876 ~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~Vr 946 (1416)
T KOG3617|consen 876 AALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVR 946 (1416)
T ss_pred HHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhhee
Confidence 998888763 2111 123455666666777778888888888877655 556777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 015726 261 SLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMT 314 (401)
Q Consensus 261 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 314 (401)
..|-.|+.++|-++-++- | |......+.+.|...|++.+|..+|.+..
T Consensus 947 I~C~qGk~~kAa~iA~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 947 IKCIQGKTDKAARIAEES---G---DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred eEeeccCchHHHHHHHhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 778889999988876543 2 66777888999999999999999998765
No 115
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.72 E-value=4e-06 Score=74.55 Aligned_cols=255 Identities=12% Similarity=0.086 Sum_probs=176.4
Q ss_pred HHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 015726 83 SKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNY 162 (401)
Q Consensus 83 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 162 (401)
..+.+.|++.+|.-.|+...... |.+...|..|....+..++-..|+..+.+..+.. +.+..+...|.-.|...|.-
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhH
Confidence 44567888888888888877332 4557788888888888888888888888888876 55677788888888888888
Q ss_pred HHHHHHHHhchhhc-----CCC--CCHHhHHHHHHHHHhcCChhHHHHHHHHH-HhCCCCCCHHhHHHHHHHHHccCChH
Q 015726 163 EEVKRIFTEFPKVY-----GIE--PNSETYNKVIKSFCESGDSSSVYSILAEM-RRKSIRPNATDFGLLLAGFYKEHKYE 234 (401)
Q Consensus 163 ~~a~~~~~~~~~~~-----~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~ll~~~~~~~~~~ 234 (401)
..|.+.++...... -.. ++...-.. ..+.....+....++|-++ ...+..+|......|.-.|.-.|+++
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 88888887764431 000 00000000 1222333445556666555 34444577777888888888889999
Q ss_pred HHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHhcCCChHHHHHHHHHH
Q 015726 235 DVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPN-LDTYKHLIHGFGKEGNLEGAKKLFASM 313 (401)
Q Consensus 235 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m 313 (401)
+|...|+.+.... +.|...||.|...++...+.++|+..|.+..+. +|+ +.....|.-+|...|.+++|.+.|-..
T Consensus 448 raiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 448 RAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 9999999888764 557788999999888888999999999988886 454 344445566677889999988887665
Q ss_pred HhC---------CCCCCHhhHHHHHHHHHccCCHHHHHHHH
Q 015726 314 TNG---------GCEPDSYCFFMFTYFLCQGGEYETALKVC 345 (401)
Q Consensus 314 ~~~---------~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 345 (401)
+.. +..++...|..|=.++.-.++.|.+.+..
T Consensus 525 L~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 525 LSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred HHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 421 12234567777766677777777555543
No 116
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.70 E-value=1.3e-05 Score=77.33 Aligned_cols=151 Identities=10% Similarity=0.048 Sum_probs=84.6
Q ss_pred CccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHH
Q 015726 72 PLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNA 151 (401)
Q Consensus 72 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 151 (401)
+.+...+..++..+...+++++|.++.+...... |....+|..+...+.+.++.+++..+ .
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~--P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~ 88 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH--KKSISALYISGILSLSRRPLNDSNLL-----------------N 88 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CcceehHHHHHHHHHhhcchhhhhhh-----------------h
Confidence 3455677788888878888888888887665332 22223444444466666664444443 2
Q ss_pred HHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccC
Q 015726 152 LLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEH 231 (401)
Q Consensus 152 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 231 (401)
++.......++..+..+...+.+- .-+..++..+..+|-+.|+.+++..+|+++.+.. +-|..+.+.+.-.|...
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~---~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~- 163 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLY---GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE- 163 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhh---hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-
Confidence 223333333443333333333221 2333456666666666677777777777666654 34556666666666666
Q ss_pred ChHHHHHHHHHHHHc
Q 015726 232 KYEDVGKVLQMMEKC 246 (401)
Q Consensus 232 ~~~~a~~~~~~~~~~ 246 (401)
+.++|.+++.+....
T Consensus 164 dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 164 DKEKAITYLKKAIYR 178 (906)
T ss_pred hHHHHHHHHHHHHHH
Confidence 666666666655443
No 117
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.68 E-value=7.6e-06 Score=65.84 Aligned_cols=156 Identities=9% Similarity=0.039 Sum_probs=75.8
Q ss_pred HHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 015726 79 SIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCIL 158 (401)
Q Consensus 79 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 158 (401)
...-..+.-.|+-+....+....... .+.+.......+....+.|++..|...|.+..... ++|..+|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~--~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA--YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc--CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHH
Confidence 33344444455555555544443311 12223344445555555555555555555555443 4555555555555555
Q ss_pred cCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHH
Q 015726 159 SKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGK 238 (401)
Q Consensus 159 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 238 (401)
.|+.++|..-|.+..+-. +-+....+.+.-.+.-.|+.+.|..++......+ .-|...-..+.......|+++.|..
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~--~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 147 LGRFDEARRAYRQALELA--PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred ccChhHHHHHHHHHHHhc--cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHh
Confidence 555555555555554332 2223334445555555555555555555554432 2244444445555555555555554
Q ss_pred HH
Q 015726 239 VL 240 (401)
Q Consensus 239 ~~ 240 (401)
+.
T Consensus 224 i~ 225 (257)
T COG5010 224 IA 225 (257)
T ss_pred hc
Confidence 44
No 118
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=2.7e-05 Score=68.87 Aligned_cols=303 Identities=13% Similarity=0.103 Sum_probs=200.9
Q ss_pred HHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcC
Q 015726 82 VSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQS-VDALNALLLGCILSK 160 (401)
Q Consensus 82 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 160 (401)
-.+....|+++.|+.+|.+.... .|+|...|..-..+|+..|++++|++--.+-.+. .|+ ...|+-...++.-.|
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l--~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIML--SPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLG 84 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHcc--CCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcc
Confidence 34567889999999999998733 2446788999999999999999999988877776 444 567888999999999
Q ss_pred CHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhc---CC----------------------------------------
Q 015726 161 NYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCES---GD---------------------------------------- 197 (401)
Q Consensus 161 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~---------------------------------------- 197 (401)
++++|+.-|.+-.+.. +.|...++-+..++... ++
T Consensus 85 ~~~eA~~ay~~GL~~d--~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l 162 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEKD--PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSL 162 (539)
T ss_pred cHHHHHHHHHHHhhcC--CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhh
Confidence 9999999998877542 33333444444444111 00
Q ss_pred -----hhHHHHHHHHHHh--------CC-------CCC------------C----------HHhHHHHHHHHHccCChHH
Q 015726 198 -----SSSVYSILAEMRR--------KS-------IRP------------N----------ATDFGLLLAGFYKEHKYED 235 (401)
Q Consensus 198 -----~~~a~~~~~~~~~--------~~-------~~~------------~----------~~~~~~ll~~~~~~~~~~~ 235 (401)
.+...+..-.+.. .| ..| | ..-...+.++..+..+++.
T Consensus 163 ~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~ 242 (539)
T KOG0548|consen 163 KLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFET 242 (539)
T ss_pred hcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHH
Confidence 0000000000000 00 001 0 0113345556666667777
Q ss_pred HHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHH-------HHHHHHhcCCChHHHHH
Q 015726 236 VGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYK-------HLIHGFGKEGNLEGAKK 308 (401)
Q Consensus 236 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~-------~li~~~~~~~~~~~a~~ 308 (401)
+.+-+....+.. .+..-++....+|...|.+.++...-+...+.|-. ...-|+ .+..+|.+.++++.|..
T Consensus 243 a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~ 319 (539)
T KOG0548|consen 243 AIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIK 319 (539)
T ss_pred HHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHH
Confidence 777777776654 45556677777888888888877777666655422 122222 23346667788889999
Q ss_pred HHHHHHhCCCCCCHhhH-------------------------HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 015726 309 LFASMTNGGCEPDSYCF-------------------------FMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSL 363 (401)
Q Consensus 309 ~~~~m~~~~~~~~~~~~-------------------------~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 363 (401)
.|.+.+.....|+...= ..-...+.+.|++..|++.+.++++.. +-|...|..-
T Consensus 320 ~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNR 398 (539)
T KOG0548|consen 320 YYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNR 398 (539)
T ss_pred HHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHH
Confidence 88887655434433111 112345678899999999999999887 6688889999
Q ss_pred HHHHHccCCHHHHHHHHHHHHhcCCCCcccc
Q 015726 364 VTGLASISKVAEANELIGLMKKRFPKSGDMW 394 (401)
Q Consensus 364 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 394 (401)
.-+|.+.|.+..|++=.+...+..|+....|
T Consensus 399 Aac~~kL~~~~~aL~Da~~~ieL~p~~~kgy 429 (539)
T KOG0548|consen 399 AACYLKLGEYPEALKDAKKCIELDPNFIKAY 429 (539)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCchHHHHH
Confidence 9999999999999988888877766654443
No 119
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.65 E-value=1.4e-05 Score=64.29 Aligned_cols=119 Identities=11% Similarity=0.154 Sum_probs=70.8
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHH-HhcCC--HHHH
Q 015726 195 SGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSL-CKLKR--SEEA 271 (401)
Q Consensus 195 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~--~~~a 271 (401)
.++.+++...++...... +.|...|..+...|...|++++|...+++..+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 445555555555555442 4456666666666666666666666666666653 33455555555543 45455 3666
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 015726 272 KALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNG 316 (401)
Q Consensus 272 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 316 (401)
..++++..+.+.. +...+..+...+.+.|++++|...|+++.+.
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6666666665432 4556666666666666666666666666654
No 120
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.62 E-value=1.1e-05 Score=74.02 Aligned_cols=188 Identities=16% Similarity=0.172 Sum_probs=83.3
Q ss_pred HhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHH
Q 015726 157 ILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDV 236 (401)
Q Consensus 157 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 236 (401)
....+|.+|+.+++.+.++ +.-..-|..+...|...|+++.|.++|-+. ..++-.|..|.+.|+|+.|
T Consensus 743 i~akew~kai~ildniqdq---k~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQ---KTASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhh---ccccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHH
Confidence 3444555555555555322 222223444555555555555555555432 1233344555555555555
Q ss_pred HHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 015726 237 GKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNG 316 (401)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 316 (401)
.++-.+... .......|-+-..-+-+.|++.+|.+++-.+. .|+. .|..|-+.|..+..+++..+-...
T Consensus 811 ~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~d 879 (1636)
T KOG3616|consen 811 FKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGD 879 (1636)
T ss_pred HHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhChh
Confidence 554443321 22233333333344444455544444443221 1221 234444444444444444332211
Q ss_pred CCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 015726 317 GCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANEL 379 (401)
Q Consensus 317 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 379 (401)
.-..|-..+..-|...|+.+.|..-|-+.- -|.+-++.|...+-|++|.++
T Consensus 880 ---~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayri 930 (1636)
T KOG3616|consen 880 ---HLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRI 930 (1636)
T ss_pred ---hhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHH
Confidence 112344445555666666666666553322 233344455555555555444
No 121
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.62 E-value=0.00023 Score=62.62 Aligned_cols=147 Identities=16% Similarity=0.152 Sum_probs=101.8
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHhcCCChHH
Q 015726 227 FYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPN-LDTYKHLIHGFGKEGNLEG 305 (401)
Q Consensus 227 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~ 305 (401)
+...|++++|+..++.+... .+.|........+.+.+.++.++|.+.++.+... .|+ ....-.+..+|.+.|++.+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence 44667777888887777665 2445555666677777788888888888877776 444 4555566777777888888
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 015726 306 AKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKK 385 (401)
Q Consensus 306 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 385 (401)
|..+++...... +-|+..|..|..+|...|+..++..-.. +.|...|++++|+..+....+
T Consensus 393 ai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 393 AIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCHHHHHHHHHHHHH
Confidence 888877777653 5566778888888887777766655433 445566777777777777777
Q ss_pred cCCCCcccch
Q 015726 386 RFPKSGDMWN 395 (401)
Q Consensus 386 ~~~~~~~~~~ 395 (401)
....+...|-
T Consensus 454 ~~~~~~~~~a 463 (484)
T COG4783 454 QVKLGFPDWA 463 (484)
T ss_pred hccCCcHHHH
Confidence 7666665553
No 122
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.62 E-value=3e-05 Score=74.79 Aligned_cols=222 Identities=14% Similarity=0.067 Sum_probs=124.2
Q ss_pred chhHHHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhh-CC----------
Q 015726 37 TIKEKKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKT-RP---------- 105 (401)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~---------- 105 (401)
.....+..++..+...+++++|.++++......+-.+....+.. ..+...++.+++..+ .+.. .+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G--~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~ 104 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISG--ILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEH 104 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHH--HHHHhhcchhhhhhh--hhhhhcccccchhHHHH
Confidence 45567888999999999999999999977655433333333333 366666666665554 2221 00
Q ss_pred ------CCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCC
Q 015726 106 ------DLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIE 179 (401)
Q Consensus 106 ------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 179 (401)
..+.+...+..+..+|-+.|+.++|..+++++++.. +-|+.+.|.+...|... +.++|++++.+....
T Consensus 105 ~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---- 178 (906)
T PRK14720 105 ICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---- 178 (906)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH----
Confidence 111122345555666666677777777777776666 45666666666666666 677777666666432
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHc-CCCCCchhHHHH
Q 015726 180 PNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKC-GIASGVNVYNIR 258 (401)
Q Consensus 180 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l 258 (401)
+...+++..+.++|.++.... + .+.+.-.++.+.+... |..--..++--+
T Consensus 179 ------------~i~~kq~~~~~e~W~k~~~~~-~----------------~d~d~f~~i~~ki~~~~~~~~~~~~~~~l 229 (906)
T PRK14720 179 ------------FIKKKQYVGIEEIWSKLVHYN-S----------------DDFDFFLRIERKVLGHREFTRLVGLLEDL 229 (906)
T ss_pred ------------HHhhhcchHHHHHHHHHHhcC-c----------------ccchHHHHHHHHHHhhhccchhHHHHHHH
Confidence 334445555555555554431 1 1122222222222221 222223344445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHh
Q 015726 259 IQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFG 298 (401)
Q Consensus 259 l~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 298 (401)
-..|-..++++++..+++.+.+...+ |.....-++.+|.
T Consensus 230 ~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 230 YEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 55566666677777777776665433 4455555555554
No 123
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.59 E-value=2.6e-05 Score=62.81 Aligned_cols=28 Identities=11% Similarity=0.241 Sum_probs=10.5
Q ss_pred CHHhHHHHHHHHHccCChHHHHHHHHHH
Q 015726 216 NATDFGLLLAGFYKEHKYEDVGKVLQMM 243 (401)
Q Consensus 216 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 243 (401)
|...|+.+.-+|-+.|+.+.|..-|.+.
T Consensus 133 d~~~~~~lgaaldq~Gr~~~Ar~ay~qA 160 (257)
T COG5010 133 DWEAWNLLGAALDQLGRFDEARRAYRQA 160 (257)
T ss_pred ChhhhhHHHHHHHHccChhHHHHHHHHH
Confidence 3333333333333333333333333333
No 124
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=0.00017 Score=68.82 Aligned_cols=258 Identities=17% Similarity=0.188 Sum_probs=177.8
Q ss_pred cHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCC-CCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 015726 74 DRMAFSIAVSKLSQANHFNAISQLLEELKTRPD-LRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNAL 152 (401)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 152 (401)
|+..-.....++...+-..+.+++++++.-.+. +..+...-+.++-... .-+...+.+..+++-..+ .|+ +
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAi-kad~trVm~YI~rLdnyD-a~~------i 1054 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAI-KADRTRVMEYINRLDNYD-APD------I 1054 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHh-hcChHHHHHHHHHhccCC-chh------H
Confidence 555666777888888888888888888884433 3333444444444333 346677777777776554 233 2
Q ss_pred HHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCC
Q 015726 153 LLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHK 232 (401)
Q Consensus 153 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 232 (401)
...+...+-+++|..+|++. ..+..+.+.|+. .-+..+.|.++-++.. ....|+.+..+-.+.|.
T Consensus 1055 a~iai~~~LyEEAF~ifkkf------~~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~ 1119 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKF------DMNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGL 1119 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHh------cccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCc
Confidence 34556677889999999877 346666666665 3456777777766532 45789999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHH
Q 015726 233 YEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFAS 312 (401)
Q Consensus 233 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 312 (401)
..+|++-|-+. .|...|.-+++...+.|.+++-.+++....++.-.|... +.||-+|++.++..+.++++
T Consensus 1120 v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-- 1189 (1666)
T KOG0985|consen 1120 VKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-- 1189 (1666)
T ss_pred hHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh--
Confidence 99888766432 356679999999999999999999998887776555544 56888999999888776654
Q ss_pred HHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 015726 313 MTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANE 378 (401)
Q Consensus 313 m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 378 (401)
..||......+.+-|...|.++.|.-++.. +..|..|...+...|++..|..
T Consensus 1190 -----~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD 1241 (1666)
T KOG0985|consen 1190 -----AGPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVD 1241 (1666)
T ss_pred -----cCCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHH
Confidence 247777777777777777777777766653 2234444444555555544443
No 125
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.58 E-value=4.6e-05 Score=61.04 Aligned_cols=190 Identities=15% Similarity=0.168 Sum_probs=136.4
Q ss_pred hcCCHHHHHHHHHhchhhc--C-CCCCHH-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCh
Q 015726 158 LSKNYEEVKRIFTEFPKVY--G-IEPNSE-TYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKY 233 (401)
Q Consensus 158 ~~~~~~~a~~~~~~~~~~~--~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 233 (401)
...+.++..+++.++.... | ..++.. .|..++-+....|+.+-|...++.+..+ ++-+..+-..-.-.+-..|.+
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhch
Confidence 3457888888888875432 2 344543 3455666677788999999999998776 333333333333345567889
Q ss_pred HHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 015726 234 EDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASM 313 (401)
Q Consensus 234 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 313 (401)
++|+++++.+.+.+ +.|..++-.-+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 99999999998876 556777777777777778888888888887776 4558899999999999999999999999998
Q ss_pred HhCCCCC-CHhhHHHHHHHHHccC---CHHHHHHHHHHHHHCC
Q 015726 314 TNGGCEP-DSYCFFMFTYFLCQGG---EYETALKVCRASMAKG 352 (401)
Q Consensus 314 ~~~~~~~-~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~ 352 (401)
+-. .| ++..+..+...+.-.| +.+.+.+++.+..+..
T Consensus 181 ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 181 LLI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 864 44 4455556666554433 5667888888887653
No 126
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.56 E-value=3.5e-05 Score=67.55 Aligned_cols=116 Identities=10% Similarity=0.034 Sum_probs=64.0
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCC-HHhHHHHHHHHHhcCChhHH
Q 015726 123 QANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPN-SETYNKVIKSFCESGDSSSV 201 (401)
Q Consensus 123 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a 201 (401)
..|+++.|++.++.+...- +.|...+......+.+.++.++|.+.++++... .|+ ....-.+..++.+.|++++|
T Consensus 318 ~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 318 LAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHHHHhcCChHHH
Confidence 4556666666666655442 334444444455566666666666666666543 344 33344455556666666666
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHH
Q 015726 202 YSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMM 243 (401)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 243 (401)
..+++..... .+-|...|..|..+|...|+..++..-..+.
T Consensus 394 i~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 394 IRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 6666665544 2445556666666666666665555544443
No 127
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.56 E-value=3e-05 Score=73.89 Aligned_cols=147 Identities=11% Similarity=0.054 Sum_probs=107.1
Q ss_pred CCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHH
Q 015726 213 IRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKH 292 (401)
Q Consensus 213 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 292 (401)
...+...+..|.....+.|.+++|+.+++...+.. +.+......+...+.+.+++++|...+++....... +......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHH
Confidence 45567778888888888888888888888887763 334566677777888888888888888888777432 4566677
Q ss_pred HHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 015726 293 LIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSL 363 (401)
Q Consensus 293 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 363 (401)
+..++.+.|++++|..+|+++...+ .-+...+..+..++...|+.++|...|++..+.. .+...-|+.+
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~ 228 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRR 228 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHH
Confidence 7777888888888888888888732 2346777788888888888888888888877753 3444444443
No 128
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.55 E-value=1.8e-05 Score=75.43 Aligned_cols=177 Identities=10% Similarity=0.006 Sum_probs=137.3
Q ss_pred hHHHHHHHHHHhcCCChhHHHH---HhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHH
Q 015726 39 KEKKRATIARLKSESNPFRILD---ICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHV 115 (401)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~A~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 115 (401)
++...++-+.+.+.+....+.+ -.....++ ++.+...+-.+.....+.|.+++|..+++.+... .|.+.....
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~ 124 (694)
T PRK15179 49 RELLQQARQVLERHAAVHKPAAALPELLDYVRR--YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFI 124 (694)
T ss_pred HHHHHHHHHHHHHhhhhcchHhhHHHHHHHHHh--ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHH
Confidence 3455566666666664443332 22222232 6667889999999999999999999999999843 355577888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhc
Q 015726 116 HSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCES 195 (401)
Q Consensus 116 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 195 (401)
.+...+.+.+++++|+..+++..+.. +-+....+.+..++.+.|++++|..+|+++... .+-+..++..+...+-..
T Consensus 125 ~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~ 201 (694)
T PRK15179 125 LMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRR 201 (694)
T ss_pred HHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHc
Confidence 89999999999999999999999886 557778888889999999999999999999763 134477889999999999
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHhHHHH
Q 015726 196 GDSSSVYSILAEMRRKSIRPNATDFGLL 223 (401)
Q Consensus 196 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l 223 (401)
|+.++|...|++..+. ..+....|+..
T Consensus 202 G~~~~A~~~~~~a~~~-~~~~~~~~~~~ 228 (694)
T PRK15179 202 GALWRARDVLQAGLDA-IGDGARKLTRR 228 (694)
T ss_pred CCHHHHHHHHHHHHHh-hCcchHHHHHH
Confidence 9999999999998765 23344444433
No 129
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.55 E-value=0.00071 Score=63.89 Aligned_cols=228 Identities=16% Similarity=0.169 Sum_probs=140.0
Q ss_pred HHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHH--HHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHH
Q 015726 41 KKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSK--LSQANHFNAISQLLEELKTRPDLRQNERFHVHSI 118 (401)
Q Consensus 41 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 118 (401)
.++++...+.+ ++++.|+........+.+.. .|..++.+ ..+.|+.++|..+++.....+ ++|..+...+-
T Consensus 12 r~rpi~d~ld~-~qfkkal~~~~kllkk~Pn~----~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~ 84 (932)
T KOG2053|consen 12 RLRPIYDLLDS-SQFKKALAKLGKLLKKHPNA----LYAKVLKALSLFRLGKGDEALKLLEALYGLK--GTDDLTLQFLQ 84 (932)
T ss_pred HHhHHHHHhhh-HHHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHHhcCchhHHHHHhhhccCC--CCchHHHHHHH
Confidence 44555555544 45788888877776553322 24444444 357788888888888776333 33677888888
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHhchhhcCCCCCHHhHHHHHHHHHh
Q 015726 119 VLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEE----VKRIFTEFPKVYGIEPNSETYNKVIKSFCE 194 (401)
Q Consensus 119 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 194 (401)
..|.+.|+.++|..+|++.... -|+......+..+|++.+++.+ |.++++.. +-+...|=.+++.+.+
T Consensus 85 ~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~------pk~~yyfWsV~Slilq 156 (932)
T KOG2053|consen 85 NVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNF------PKRAYYFWSVISLILQ 156 (932)
T ss_pred HHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------CcccchHHHHHHHHHH
Confidence 8888888888888888888765 4667777777778888777654 44444433 3344444455555443
Q ss_pred cC-Ch---------hHHHHHHHHHHhCC-CCCCHHhHHHHHHHHHccCChHHHHHHHH-HHHHcCCCCCchhHHHHHHHH
Q 015726 195 SG-DS---------SSVYSILAEMRRKS-IRPNATDFGLLLAGFYKEHKYEDVGKVLQ-MMEKCGIASGVNVYNIRIQSL 262 (401)
Q Consensus 195 ~~-~~---------~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~ll~~~ 262 (401)
.- .. .-|.+.++.+.+.+ .--+..-.......+-..|++++|..++. ...+.-..-+...-+.-+..+
T Consensus 157 s~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dll 236 (932)
T KOG2053|consen 157 SIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLL 236 (932)
T ss_pred hccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 21 11 23555556655443 22222233334445556777888888873 333332233344445667777
Q ss_pred HhcCCHHHHHHHHHHHHHCCC
Q 015726 263 CKLKRSEEAKALLDGMLSRGI 283 (401)
Q Consensus 263 ~~~~~~~~a~~~~~~~~~~~~ 283 (401)
...+++.+..++-.++..+|.
T Consensus 237 k~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 237 KLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred HHhcChHHHHHHHHHHHHhCC
Confidence 778888888888888887753
No 130
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.48 E-value=0.00022 Score=57.26 Aligned_cols=163 Identities=11% Similarity=0.034 Sum_probs=76.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHH
Q 015726 114 HVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFC 193 (401)
Q Consensus 114 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 193 (401)
+..++.+....|+.+.|...++++.+.- +.+..+-..-.-.+-..|++++|+++|+.+.+.. +.|..++---+...-
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd--pt~~v~~KRKlAilk 131 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD--PTDTVIRKRKLAILK 131 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC--cchhHHHHHHHHHHH
Confidence 3444444445555566665555554432 2222222111112233455566666666555432 334444444444444
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcC---CHHH
Q 015726 194 ESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLK---RSEE 270 (401)
Q Consensus 194 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~ 270 (401)
..|+.-+|++-+.+..+. +..|...|.-+-..|...|++++|.-.++++.-.. |.+...+..+...+.-.| +.+.
T Consensus 132 a~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 445555555555555444 44455566666666666666666655555555432 222223333333332222 3444
Q ss_pred HHHHHHHHHHC
Q 015726 271 AKALLDGMLSR 281 (401)
Q Consensus 271 a~~~~~~~~~~ 281 (401)
+.++|.+..+.
T Consensus 210 arkyy~~alkl 220 (289)
T KOG3060|consen 210 ARKYYERALKL 220 (289)
T ss_pred HHHHHHHHHHh
Confidence 55555555443
No 131
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.47 E-value=7.4e-06 Score=61.75 Aligned_cols=98 Identities=15% Similarity=0.086 Sum_probs=46.2
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 015726 291 KHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASI 370 (401)
Q Consensus 291 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 370 (401)
..+...+...|++++|.+.++.+...+ +.+...+..+...+...|++++|..+++...+.+ +.+...+..+...|...
T Consensus 21 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 21 YALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHc
Confidence 333444444555555555555544432 2233444444445555555555555555444432 33344444444555555
Q ss_pred CCHHHHHHHHHHHHhcCCCC
Q 015726 371 SKVAEANELIGLMKKRFPKS 390 (401)
Q Consensus 371 g~~~~a~~~~~~~~~~~~~~ 390 (401)
|++++|.+.++...+..|.+
T Consensus 99 g~~~~A~~~~~~al~~~p~~ 118 (135)
T TIGR02552 99 GEPESALKALDLAIEICGEN 118 (135)
T ss_pred CCHHHHHHHHHHHHHhcccc
Confidence 55555555555555544433
No 132
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.43 E-value=2.2e-05 Score=59.83 Aligned_cols=128 Identities=13% Similarity=0.050 Sum_probs=75.2
Q ss_pred hHHHHHHHHHHhCCCchHHHHHHHHhhhC-CCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC--HHHHHHH
Q 015726 76 MAFSIAVSKLSQANHFNAISQLLEELKTR-PDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQS--VDALNAL 152 (401)
Q Consensus 76 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l 152 (401)
..|..++..+ ..++...+...++.+... ++.+-.......+...+...|++++|...|+...+....+. ......+
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 3455555555 367777777777776632 22212123333344566677777777777777776542222 1233345
Q ss_pred HHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 015726 153 LLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAE 207 (401)
Q Consensus 153 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 207 (401)
...+...|++++|+..++..... ......+......|.+.|++++|...|+.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~---~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDE---AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCc---chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 56667777777777777665321 33444556666777777777777777765
No 133
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.39 E-value=0.00011 Score=69.94 Aligned_cols=88 Identities=9% Similarity=-0.060 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 015726 304 EGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLM 383 (401)
Q Consensus 304 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 383 (401)
..|...+...++.. ..+..+|+.|.-. ...|++.-|...|-+-.... +....+|..+.-.+.+..+++.|...|...
T Consensus 800 ~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~ 876 (1238)
T KOG1127|consen 800 CTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSV 876 (1238)
T ss_pred HHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhh
Confidence 35666666665542 3344555555443 55566666666665544443 445667777777788888888888888888
Q ss_pred HhcCCCCcccc
Q 015726 384 KKRFPKSGDMW 394 (401)
Q Consensus 384 ~~~~~~~~~~~ 394 (401)
+...|.|...|
T Consensus 877 qSLdP~nl~~W 887 (1238)
T KOG1127|consen 877 QSLDPLNLVQW 887 (1238)
T ss_pred hhcCchhhHHH
Confidence 88788777666
No 134
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.39 E-value=0.00018 Score=68.55 Aligned_cols=183 Identities=12% Similarity=0.013 Sum_probs=123.6
Q ss_pred chHHHHHHHH-hhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 015726 91 FNAISQLLEE-LKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIF 169 (401)
Q Consensus 91 ~~~a~~~~~~-~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 169 (401)
...|...|=+ ++..+... ..|..|...|+...+...|.+.|+...+.+ ..+...+....+.|++..+++.|..+.
T Consensus 474 ~~~al~ali~alrld~~~a---paf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLA---PAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred HHHHHHHHHHHHhcccchh---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHH
Confidence 4444444433 33333333 378888888888888889999999988876 557788888899999999999998884
Q ss_pred HhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCC
Q 015726 170 TEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIA 249 (401)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 249 (401)
-...+......-...|....-.|.+.++...|..-|+...... +.|...|..++.+|...|++..|.++|.+....+
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr-- 626 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR-- 626 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--
Confidence 4432211111111223333444667788888888888877653 4477788899999999999999999998887753
Q ss_pred CC-chhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015726 250 SG-VNVYNIRIQSLCKLKRSEEAKALLDGMLS 280 (401)
Q Consensus 250 ~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 280 (401)
|+ ...---..-.-+..|.+.++...+..+..
T Consensus 627 P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 627 PLSKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 32 22222223344567888888888877654
No 135
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.38 E-value=2.6e-05 Score=59.21 Aligned_cols=90 Identities=12% Similarity=-0.023 Sum_probs=42.3
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCC
Q 015726 118 IVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGD 197 (401)
Q Consensus 118 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 197 (401)
...+...|++++|...|+...... +.+...|..+..++...|++++|...|+...+.. +.+...+..+..++.+.|+
T Consensus 31 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~--p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 31 GYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD--ASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCcHHHHHHHHHHHHcCC
Confidence 334444455555555555544443 3344444444445555555555555555544321 2333444444444555555
Q ss_pred hhHHHHHHHHHHh
Q 015726 198 SSSVYSILAEMRR 210 (401)
Q Consensus 198 ~~~a~~~~~~~~~ 210 (401)
+++|.+.|+...+
T Consensus 108 ~~eAi~~~~~Al~ 120 (144)
T PRK15359 108 PGLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555444
No 136
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.36 E-value=0.0014 Score=58.53 Aligned_cols=136 Identities=13% Similarity=0.088 Sum_probs=92.6
Q ss_pred CCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHH
Q 015726 71 SPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALN 150 (401)
Q Consensus 71 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 150 (401)
.|-|..+|..+|.-+... .++++.+.++++. +.+|.....|..-|..-....+++.++++|.+-+.. ..+...|.
T Consensus 16 nP~di~sw~~lire~qt~-~~~~~R~~YEq~~--~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~ 90 (656)
T KOG1914|consen 16 NPYDIDSWSQLIREAQTQ-PIDKVRETYEQLV--NVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWK 90 (656)
T ss_pred CCccHHHHHHHHHHHccC-CHHHHHHHHHHHh--ccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHH
Confidence 455899999999988766 9999999999998 345555678888899999999999999999988765 34566676
Q ss_pred HHHHHHHh-cCCH----HHHHHHHHhchhhcCCCCCH-HhHHHHHHH---------HHhcCChhHHHHHHHHHHhC
Q 015726 151 ALLLGCIL-SKNY----EEVKRIFTEFPKVYGIEPNS-ETYNKVIKS---------FCESGDSSSVYSILAEMRRK 211 (401)
Q Consensus 151 ~l~~~~~~-~~~~----~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~---------~~~~~~~~~a~~~~~~~~~~ 211 (401)
..+.--.+ .|+. +...+.|+-..+..|+.+-. ..|+..+.. +....+++...++|+++...
T Consensus 91 lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~t 166 (656)
T KOG1914|consen 91 LYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVT 166 (656)
T ss_pred HHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcC
Confidence 66653332 2222 33444455555555543322 234444433 33444667778888887654
No 137
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.34 E-value=2.6e-05 Score=68.76 Aligned_cols=122 Identities=19% Similarity=0.189 Sum_probs=73.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccC
Q 015726 257 IRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGG 336 (401)
Q Consensus 257 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 336 (401)
.++..+...++++.|..+|+++.+.. |+ ....+++.+...++-.+|.+++++.++.. +-+......-...|.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 34445555566666777777666652 33 23335555555666666666666666442 234455555556666777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 015726 337 EYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMK 384 (401)
Q Consensus 337 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 384 (401)
+++.|.++.+++.... +-+..+|..|..+|.+.|+++.|+..++.+.
T Consensus 249 ~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 7777777777766553 3344567777777777777777776666554
No 138
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.33 E-value=3.5e-05 Score=58.05 Aligned_cols=92 Identities=16% Similarity=0.176 Sum_probs=40.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhc
Q 015726 116 HSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCES 195 (401)
Q Consensus 116 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 195 (401)
.+...+...|++++|.+.|+.+...+ +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...
T Consensus 22 ~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 22 ALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD--PDDPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHHc
Confidence 33344444444444444444444433 2344444444444444444444444444443221 22333344444444444
Q ss_pred CChhHHHHHHHHHHh
Q 015726 196 GDSSSVYSILAEMRR 210 (401)
Q Consensus 196 ~~~~~a~~~~~~~~~ 210 (401)
|++++|...|+...+
T Consensus 99 g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 99 GEPESALKALDLAIE 113 (135)
T ss_pred CCHHHHHHHHHHHHH
Confidence 444444444444443
No 139
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.33 E-value=0.00015 Score=67.56 Aligned_cols=240 Identities=11% Similarity=0.087 Sum_probs=155.1
Q ss_pred cHhHHHHHHH--HHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCC---------C
Q 015726 74 DRMAFSIAVS--KLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYG---------L 142 (401)
Q Consensus 74 ~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---------~ 142 (401)
|..+-.++++ .|...|+.+.|.+-.+-++. ..+|..+...|.+..+.|-|.--+..|.... -
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS-------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q 797 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS-------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ 797 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHhh-------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence 4455555553 45667999999888777652 3578999999999998888876666654310 0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHH
Q 015726 143 RQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGL 222 (401)
Q Consensus 143 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 222 (401)
.++ .+-....-.....|.+++|+.+|.+.. + |..|=+.|-..|.|++|+++-+.-....+ ..||..
T Consensus 798 ~~~-e~eakvAvLAieLgMlEeA~~lYr~ck-R---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~ 863 (1416)
T KOG3617|consen 798 NGE-EDEAKVAVLAIELGMLEEALILYRQCK-R---------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYN 863 (1416)
T ss_pred CCc-chhhHHHHHHHHHhhHHHHHHHHHHHH-H---------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHH
Confidence 121 222223334567899999999999984 3 45566677788999999998765322222 345555
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcC-------------------CCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 015726 223 LLAGFYKEHKYEDVGKVLQMMEKCG-------------------IASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGI 283 (401)
Q Consensus 223 ll~~~~~~~~~~~a~~~~~~~~~~~-------------------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 283 (401)
....+-..+|.+.|++.|++..... -..|...|.-....+...|+.+.|+.+|....+
T Consensus 864 yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--- 940 (1416)
T KOG3617|consen 864 YAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD--- 940 (1416)
T ss_pred HHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---
Confidence 6666666777887777766531110 122334444445555566777777777765543
Q ss_pred CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 015726 284 KPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASM 349 (401)
Q Consensus 284 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 349 (401)
|..+++..|-.|+.++|-++-++ .-|....-.+.+.|...|++.+|..+|.++.
T Consensus 941 ------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 941 ------YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred ------hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 45566777777888888777654 2344555667788888888888888887654
No 140
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.26 E-value=3.6e-05 Score=56.40 Aligned_cols=106 Identities=19% Similarity=0.164 Sum_probs=70.6
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCC----HhhHHHHHHHHHccCCHHHHHHHHHHHHHCCC--CCCHHHHHH
Q 015726 289 TYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPD----SYCFFMFTYFLCQGGEYETALKVCRASMAKGW--VPHFSTMKS 362 (401)
Q Consensus 289 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~ 362 (401)
++..+...+.+.|++++|.+.+..+.+.. |+ ...+..+..++.+.|++++|...++.+..... +.....+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 44555666667777777777777776542 22 23555677777777888888888877766421 112455666
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcCCCCcccchh
Q 015726 363 LVTGLASISKVAEANELIGLMKKRFPKSGDMWNA 396 (401)
Q Consensus 363 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 396 (401)
+..++.+.|++++|.+.++++.+.+|.+.....+
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 115 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLA 115 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence 7777777788888888888887777776655443
No 141
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.25 E-value=2.2e-06 Score=47.24 Aligned_cols=32 Identities=53% Similarity=0.856 Sum_probs=14.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC
Q 015726 255 YNIRIQSLCKLKRSEEAKALLDGMLSRGIKPN 286 (401)
Q Consensus 255 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~ 286 (401)
||++|.+|++.|++++|.++|++|.+.|++||
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 44444444444444444444444444444443
No 142
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.24 E-value=2.1e-06 Score=47.34 Aligned_cols=33 Identities=48% Similarity=0.779 Sum_probs=23.1
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCC
Q 015726 289 TYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPD 321 (401)
Q Consensus 289 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 321 (401)
+|+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566777777777777777777777777666665
No 143
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.24 E-value=8.4e-05 Score=56.64 Aligned_cols=126 Identities=15% Similarity=0.127 Sum_probs=71.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc--CHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCC--HhhHHHHHH
Q 015726 255 YNIRIQSLCKLKRSEEAKALLDGMLSRGIKP--NLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPD--SYCFFMFTY 330 (401)
Q Consensus 255 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~ 330 (401)
|..++..+ ..++...+...++.+......- .....-.+...+...|++++|...|+........|+ ......+..
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 44444444 3566666666666666652211 012223344556667777777777777776542222 123344556
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 015726 331 FLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLM 383 (401)
Q Consensus 331 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 383 (401)
.+...|++++|...++..... ......+....++|.+.|++++|...|+..
T Consensus 94 ~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 666777777777777553322 234445566667777777777777776653
No 144
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.22 E-value=2.8e-06 Score=46.49 Aligned_cols=31 Identities=29% Similarity=0.469 Sum_probs=13.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 015726 254 VYNIRIQSLCKLKRSEEAKALLDGMLSRGIK 284 (401)
Q Consensus 254 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 284 (401)
+|+.++.+|++.|+++.|.++|++|.+.|++
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 3444444444444444444444444444443
No 145
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.22 E-value=5.9e-05 Score=66.57 Aligned_cols=124 Identities=13% Similarity=0.061 Sum_probs=68.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHH
Q 015726 113 FHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSF 192 (401)
Q Consensus 113 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 192 (401)
....++..+...++++.|..+|+++.+.. |+ ....++..+...++-.+|.+++.+..+.. +.+......-...+
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~--p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN--PQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence 34444555555666666666666666542 33 23335555555566666666666665432 33444444555555
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHH
Q 015726 193 CESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMM 243 (401)
Q Consensus 193 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 243 (401)
.+.++++.|+++.+++... .+-+..+|..|..+|.+.|+++.|+..++.+
T Consensus 245 l~k~~~~lAL~iAk~av~l-sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVEL-SPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HhcCCHHHHHHHHHHHHHh-CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 6666666666666666554 1223446666666666666666666655544
No 146
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.22 E-value=0.0013 Score=62.10 Aligned_cols=224 Identities=10% Similarity=0.095 Sum_probs=150.6
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCCh
Q 015726 121 YGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLG--CILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDS 198 (401)
Q Consensus 121 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 198 (401)
....+++..|++...++.+. .|+.. |..++.+ ..+.|..++|..+++..... + ..|..|...+-.+|.+.++.
T Consensus 19 ~ld~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~-~-~~D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGL-K-GTDDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccC-C-CCchHHHHHHHHHHHHHhhh
Confidence 44678999999999988775 45544 3333443 45789999999888887432 2 23788899999999999999
Q ss_pred hHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcC----------CH
Q 015726 199 SSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLK----------RS 268 (401)
Q Consensus 199 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----------~~ 268 (401)
++|..+|++.... -|+......+..+|.+.+.+.+-.++--++-+. .+.....+-.+++.+.+.- -.
T Consensus 94 d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l 170 (932)
T KOG2053|consen 94 DEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILL 170 (932)
T ss_pred hHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhH
Confidence 9999999998765 566777777888888888877655554444443 3445555555665555431 12
Q ss_pred HHHHHHHHHHHHCC-CCcCHHHHHHHHHHHhcCCChHHHHHHHH-HHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHH
Q 015726 269 EEAKALLDGMLSRG-IKPNLDTYKHLIHGFGKEGNLEGAKKLFA-SMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCR 346 (401)
Q Consensus 269 ~~a~~~~~~~~~~~-~~p~~~~~~~li~~~~~~~~~~~a~~~~~-~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 346 (401)
.-|.+.++.+.+.+ .--+..-...-...+...|++++|++++. ...+.-..-+...-+.-+..+...+++.+..++..
T Consensus 171 ~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~ 250 (932)
T KOG2053|consen 171 ALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSS 250 (932)
T ss_pred HHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHH
Confidence 34666777776654 11122222222334456788999999884 34443333344455667778888899999999998
Q ss_pred HHHHCC
Q 015726 347 ASMAKG 352 (401)
Q Consensus 347 ~~~~~~ 352 (401)
++...|
T Consensus 251 ~Ll~k~ 256 (932)
T KOG2053|consen 251 RLLEKG 256 (932)
T ss_pred HHHHhC
Confidence 888886
No 147
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.20 E-value=5.1e-05 Score=67.32 Aligned_cols=133 Identities=14% Similarity=0.105 Sum_probs=106.4
Q ss_pred HHHhchhhc--CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCCCHHhHHHHHHHHHccCChHHHHHHHHHH
Q 015726 168 IFTEFPKVY--GIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKS--IRPNATDFGLLLAGFYKEHKYEDVGKVLQMM 243 (401)
Q Consensus 168 ~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 243 (401)
++..|.+.+ +.+.+.....++++.+....+++.+..++.+.+... ...-..|.+++++.|.+.|..+.+..+++.=
T Consensus 50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~ 129 (429)
T PF10037_consen 50 LYSELDKKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNR 129 (429)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhCh
Confidence 445543332 335566778888888888888999999999887652 2233456679999999999999999999999
Q ss_pred HHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcC
Q 015726 244 EKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKE 300 (401)
Q Consensus 244 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 300 (401)
...|+-||..++|.+|+.+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 130 ~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 130 LQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999999999999999999998887777777777767666655
No 148
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.19 E-value=3.3e-06 Score=46.19 Aligned_cols=33 Identities=33% Similarity=0.643 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCC
Q 015726 288 DTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEP 320 (401)
Q Consensus 288 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 320 (401)
.+|+.++.+|.+.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666666655
No 149
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.14 E-value=4.4e-05 Score=67.69 Aligned_cols=124 Identities=17% Similarity=0.154 Sum_probs=91.7
Q ss_pred CCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHc--CCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHH
Q 015726 212 SIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKC--GIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDT 289 (401)
Q Consensus 212 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 289 (401)
+.+.+......+++.+....+.+.+..++-+.... ....-..|..++++.|.+.|..+.+..+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44567777777888887777888888877777654 2222234556888888888888888888888778888888888
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcc
Q 015726 290 YKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQG 335 (401)
Q Consensus 290 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 335 (401)
+|.||..+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888877776666666666666665554
No 150
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.13 E-value=4.7e-05 Score=53.00 Aligned_cols=74 Identities=14% Similarity=0.263 Sum_probs=41.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCC-CcCHHHHHHHHHHHhcCC--------ChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 015726 260 QSLCKLKRSEEAKALLDGMLSRGI-KPNLDTYKHLIHGFGKEG--------NLEGAKKLFASMTNGGCEPDSYCFFMFTY 330 (401)
Q Consensus 260 ~~~~~~~~~~~a~~~~~~~~~~~~-~p~~~~~~~li~~~~~~~--------~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 330 (401)
..+...+++.....+|+.+++.|+ .|+..+|+.++.+..+.. ++...+.+|++|+..+++|+..+|+.++.
T Consensus 33 ~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~ 112 (120)
T PF08579_consen 33 NSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLG 112 (120)
T ss_pred HHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHH
Confidence 333344555555555555555555 555555555555544321 23345566666666666666666666666
Q ss_pred HHH
Q 015726 331 FLC 333 (401)
Q Consensus 331 ~~~ 333 (401)
.+.
T Consensus 113 ~Ll 115 (120)
T PF08579_consen 113 SLL 115 (120)
T ss_pred HHH
Confidence 554
No 151
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.10 E-value=7.1e-05 Score=51.99 Aligned_cols=93 Identities=15% Similarity=0.129 Sum_probs=50.4
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 015726 292 HLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASIS 371 (401)
Q Consensus 292 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 371 (401)
.+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|.+.++...+.. +.+...+..+...+...|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHH
Confidence 34444555556666666665555432 1222444555555555666666666666555543 223345555556666666
Q ss_pred CHHHHHHHHHHHHhc
Q 015726 372 KVAEANELIGLMKKR 386 (401)
Q Consensus 372 ~~~~a~~~~~~~~~~ 386 (401)
++++|...++...+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 666666666665544
No 152
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.09 E-value=5.8e-05 Score=52.55 Aligned_cols=75 Identities=21% Similarity=0.434 Sum_probs=42.4
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCC-CCCchhHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 015726 224 LAGFYKEHKYEDVGKVLQMMEKCGI-ASGVNVYNIRIQSLCKLK--------RSEEAKALLDGMLSRGIKPNLDTYKHLI 294 (401)
Q Consensus 224 l~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~p~~~~~~~li 294 (401)
|..+...+++.....+|+.+...|+ .|+..+|+.++.+.++.. +.-..+.+|+.|...+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3334444555555555555555555 555555555555554432 2334566666777667777777777776
Q ss_pred HHHh
Q 015726 295 HGFG 298 (401)
Q Consensus 295 ~~~~ 298 (401)
..+.
T Consensus 112 ~~Ll 115 (120)
T PF08579_consen 112 GSLL 115 (120)
T ss_pred HHHH
Confidence 6654
No 153
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.06 E-value=0.00022 Score=52.12 Aligned_cols=95 Identities=16% Similarity=0.052 Sum_probs=39.1
Q ss_pred HHHHHHHHhCCCchHHHHHHHHhhh-CCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCC--CCHHHHHHHHHH
Q 015726 79 SIAVSKLSQANHFNAISQLLEELKT-RPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLR--QSVDALNALLLG 155 (401)
Q Consensus 79 ~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~ 155 (401)
......+.+.|++++|.+.|+.+.. .++.+.....+..+..++.+.|+++.|.+.|+.+...... .....+..+..+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 3334444444555555555544442 1111111223333444444445555555555444432100 012333344444
Q ss_pred HHhcCCHHHHHHHHHhch
Q 015726 156 CILSKNYEEVKRIFTEFP 173 (401)
Q Consensus 156 ~~~~~~~~~a~~~~~~~~ 173 (401)
+.+.|+.++|...++++.
T Consensus 86 ~~~~~~~~~A~~~~~~~~ 103 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVI 103 (119)
T ss_pred HHHhCChHHHHHHHHHHH
Confidence 444444444444444443
No 154
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.98 E-value=0.0002 Score=61.07 Aligned_cols=129 Identities=16% Similarity=0.147 Sum_probs=54.5
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 015726 219 DFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCK-LKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGF 297 (401)
Q Consensus 219 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~ 297 (401)
+|..+|+..-+.+..+.|..+|.+..+.+ ..+..+|-.....-.. .++.+.|.++|+...+. +..+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 34445555555555555555555554322 1122233322222112 23444455555554443 222444444444555
Q ss_pred hcCCChHHHHHHHHHHHhCCCCCC---HhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 015726 298 GKEGNLEGAKKLFASMTNGGCEPD---SYCFFMFTYFLCQGGEYETALKVCRASMA 350 (401)
Q Consensus 298 ~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 350 (401)
...|+.+.|..+|++.... +.++ ...|...+..=.+.|+.+.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555433 1111 12444444444444555555555444443
No 155
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.96 E-value=0.00018 Score=49.90 Aligned_cols=91 Identities=15% Similarity=0.164 Sum_probs=42.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhc
Q 015726 116 HSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCES 195 (401)
Q Consensus 116 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 195 (401)
.+...+...|++++|...+++..+.. +.+...+..+...+...+++++|.+.++...+.. +.+..++..+...+...
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD--PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CcchhHHHHHHHHHHHH
Confidence 33444444555555555555554432 2223444444445555555555555555543321 22223444444455555
Q ss_pred CChhHHHHHHHHHH
Q 015726 196 GDSSSVYSILAEMR 209 (401)
Q Consensus 196 ~~~~~a~~~~~~~~ 209 (401)
|+++.|...+....
T Consensus 82 ~~~~~a~~~~~~~~ 95 (100)
T cd00189 82 GKYEEALEAYEKAL 95 (100)
T ss_pred HhHHHHHHHHHHHH
Confidence 55555555554443
No 156
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.96 E-value=0.0017 Score=55.64 Aligned_cols=26 Identities=12% Similarity=0.192 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHhh
Q 015726 77 AFSIAVSKLSQANHFNAISQLLEELK 102 (401)
Q Consensus 77 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 102 (401)
.|......|...|++++|.+.|.+..
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa 62 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAA 62 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHH
Confidence 45555556666666666666665554
No 157
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.94 E-value=1.1e-05 Score=42.89 Aligned_cols=25 Identities=40% Similarity=0.713 Sum_probs=9.4
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHH
Q 015726 290 YKHLIHGFGKEGNLEGAKKLFASMT 314 (401)
Q Consensus 290 ~~~li~~~~~~~~~~~a~~~~~~m~ 314 (401)
|+.++++|++.|++++|.++|++|.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 3333333333333333333333333
No 158
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.91 E-value=1.8e-05 Score=42.09 Aligned_cols=29 Identities=41% Similarity=0.645 Sum_probs=19.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 015726 254 VYNIRIQSLCKLKRSEEAKALLDGMLSRG 282 (401)
Q Consensus 254 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 282 (401)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666666666666666666666666654
No 159
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.91 E-value=0.00026 Score=62.67 Aligned_cols=103 Identities=15% Similarity=0.030 Sum_probs=81.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCC
Q 015726 258 RIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGE 337 (401)
Q Consensus 258 ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 337 (401)
-...+...|++++|+..|++..+.... +...|..+..+|...|++++|+..++++++.. +.+...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence 345566789999999999999887533 67788888889999999999999999998864 3356778888899999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 015726 338 YETALKVCRASMAKGWVPHFSTMKSLV 364 (401)
Q Consensus 338 ~~~a~~~~~~~~~~~~~~~~~~~~~l~ 364 (401)
+++|...|++.++.+ |+...+...+
T Consensus 86 ~~eA~~~~~~al~l~--P~~~~~~~~l 110 (356)
T PLN03088 86 YQTAKAALEKGASLA--PGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 999999999988764 4444433333
No 160
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.90 E-value=0.0037 Score=52.03 Aligned_cols=180 Identities=12% Similarity=0.074 Sum_probs=91.5
Q ss_pred HHHHHHHhCCCchHHHHHHHHhhh-CCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 015726 80 IAVSKLSQANHFNAISQLLEELKT-RPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCIL 158 (401)
Q Consensus 80 ~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 158 (401)
.....+...|++++|++.|+.+.. .|..+.-....-.++.+|.+.++++.|...+++..+.........+...+.+.+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 344455667788888888887773 2222221222244556677778888888888777765322222222222322221
Q ss_pred --c---------------CC---HHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH
Q 015726 159 --S---------------KN---YEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNAT 218 (401)
Q Consensus 159 --~---------------~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 218 (401)
. .| ..+|+..|+++++. -|+. .-..+|...+..+... =..
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---yP~S-------------~ya~~A~~rl~~l~~~----la~ 176 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---YPNS-------------QYTTDATKRLVFLKDR----LAK 176 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---CcCC-------------hhHHHHHHHHHHHHHH----HHH
Confidence 1 11 23444555555544 2332 1223333333222211 000
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHc--CCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015726 219 DFGLLLAGFYKEHKYEDVGKVLQMMEKC--GIASGVNVYNIRIQSLCKLKRSEEAKALLDGML 279 (401)
Q Consensus 219 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 279 (401)
.--.+...|.+.|.+..|..-++.+.+. +.+........++.+|...|..++|..+...+.
T Consensus 177 ~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 177 YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 1113455567777777777777777664 112223445566677777777777777665543
No 161
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.88 E-value=0.0004 Score=54.79 Aligned_cols=86 Identities=23% Similarity=0.357 Sum_probs=46.2
Q ss_pred CHHhHHHHHHHHHc-----cCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhc----------------CCHHHHHHH
Q 015726 216 NATDFGLLLAGFYK-----EHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKL----------------KRSEEAKAL 274 (401)
Q Consensus 216 ~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----------------~~~~~a~~~ 274 (401)
+..+|..+++.|.+ .|..+-....++.|.+.|+..|..+|+.|++.+=+. .+-+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 44555555555442 244555555556666666666666666666554331 123345556
Q ss_pred HHHHHHCCCCcCHHHHHHHHHHHhcCC
Q 015726 275 LDGMLSRGIKPNLDTYKHLIHGFGKEG 301 (401)
Q Consensus 275 ~~~~~~~~~~p~~~~~~~li~~~~~~~ 301 (401)
+++|+..|+-||..++..+++.+.+.+
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 666666666666666666666554443
No 162
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.87 E-value=0.00098 Score=52.48 Aligned_cols=92 Identities=11% Similarity=0.087 Sum_probs=62.7
Q ss_pred cHhHHHHHHHHHHhCCCchHHHHHHHHhhhC-CCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 015726 74 DRMAFSIAVSKLSQANHFNAISQLLEELKTR-PDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNAL 152 (401)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 152 (401)
....+..+...+...|++++|...|++.... ++.+.....+..+...+.+.|++++|...+++..+.. +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 4556777777788888888888888887733 2222123567777788888888888888888887754 3355666666
Q ss_pred HHHHHhcCCHHHHH
Q 015726 153 LLGCILSKNYEEVK 166 (401)
Q Consensus 153 ~~~~~~~~~~~~a~ 166 (401)
...+...|+...+.
T Consensus 113 g~~~~~~g~~~~a~ 126 (172)
T PRK02603 113 AVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHcCChHhHh
Confidence 66776666644433
No 163
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.85 E-value=3.3e-05 Score=52.55 Aligned_cols=81 Identities=14% Similarity=0.181 Sum_probs=41.8
Q ss_pred cCChHHHHHHHHHHhhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHH
Q 015726 124 ANMIDHAMQTFEEMDKYGLR-QSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVY 202 (401)
Q Consensus 124 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 202 (401)
.|+++.|+.+++++.+.... ++...+..+..+|.+.|++++|..++++ .+.. +.+....-.+..++.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--PSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--HCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--CCCHHHHHHHHHHHHHhCCHHHHH
Confidence 35666666666666654321 1333344456666666666666666665 2221 112233334456666666666666
Q ss_pred HHHHH
Q 015726 203 SILAE 207 (401)
Q Consensus 203 ~~~~~ 207 (401)
++|++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66654
No 164
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.85 E-value=0.00013 Score=60.16 Aligned_cols=94 Identities=21% Similarity=0.187 Sum_probs=48.8
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHccCCHHHH
Q 015726 263 CKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPD-SYCFFMFTYFLCQGGEYETA 341 (401)
Q Consensus 263 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a 341 (401)
.+.+++.+|+..|.+..+.... |.+-|..=..+|.+.|.++.|++=.+..+.. .|. ..+|..|..+|...|++++|
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHHHH
Confidence 3445566666666655554221 4444444555555666666655555555542 232 34555555556666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHH
Q 015726 342 LKVCRASMAKGWVPHFSTMK 361 (401)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~ 361 (401)
++.|++.++. .|+-.+|.
T Consensus 169 ~~aykKaLel--dP~Ne~~K 186 (304)
T KOG0553|consen 169 IEAYKKALEL--DPDNESYK 186 (304)
T ss_pred HHHHHhhhcc--CCCcHHHH
Confidence 6655555532 44444443
No 165
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.84 E-value=0.0095 Score=49.62 Aligned_cols=58 Identities=7% Similarity=0.146 Sum_probs=43.3
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 015726 327 MFTYFLCQGGEYETALKVCRASMAK--GWVPHFSTMKSLVTGLASISKVAEANELIGLMK 384 (401)
Q Consensus 327 ~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 384 (401)
.+.+.|.+.|.+..|..-++.+++. +.+........++.+|.+.|..++|.++...+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 4566678888888888888888876 444455667778888888888888888776654
No 166
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.83 E-value=8.4e-05 Score=50.57 Aligned_cols=80 Identities=15% Similarity=0.147 Sum_probs=33.9
Q ss_pred CCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 015726 89 NHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRI 168 (401)
Q Consensus 89 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 168 (401)
|+++.|+.+++++.......++...+..+..+|.+.|++++|..+++. .+.+ +.+......+..++.+.|++++|+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 455555555555552211111233333345555555555555555554 2211 11223333334455555555555555
Q ss_pred HH
Q 015726 169 FT 170 (401)
Q Consensus 169 ~~ 170 (401)
|+
T Consensus 81 l~ 82 (84)
T PF12895_consen 81 LE 82 (84)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 167
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.82 E-value=0.0001 Score=47.31 Aligned_cols=62 Identities=16% Similarity=0.116 Sum_probs=45.2
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC
Q 015726 328 FTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKS 390 (401)
Q Consensus 328 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 390 (401)
+...+.+.|++++|.+.|+++++.. +-+...+..+..++...|++++|..+|+++.+..|.+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 3456677888888888888887765 4466777777788888888888888888887777665
No 168
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.81 E-value=0.00052 Score=58.59 Aligned_cols=133 Identities=14% Similarity=0.094 Sum_probs=82.1
Q ss_pred hHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHH-HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 015726 76 MAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVL-YGQANMIDHAMQTFEEMDKYGLRQSVDALNALLL 154 (401)
Q Consensus 76 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 154 (401)
.+|..++..+.+.+..+.|.++|.+....+... ..+|...... |...++.+.|.++|+...+. ++.+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~--~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCT--YHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS---THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHH
Confidence 357777777777777788888888777433322 3344444444 33345666688888777664 3556677777777
Q ss_pred HHHhcCCHHHHHHHHHhchhhcCCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 015726 155 GCILSKNYEEVKRIFTEFPKVYGIEP-NSETYNKVIKSFCESGDSSSVYSILAEMRRK 211 (401)
Q Consensus 155 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 211 (401)
.+.+.|+.+.|..+|++......... ....|...+..=.+.|+++.+.++.+++.+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777888888888877765421111 1236777777666777777777777776653
No 169
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.81 E-value=0.018 Score=49.70 Aligned_cols=309 Identities=12% Similarity=0.087 Sum_probs=179.8
Q ss_pred ChhHHHHHhhhccCCCCCCccHhHHHHHHHHHH--hCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHH--HHhcCChHH
Q 015726 54 NPFRILDICCGASLAPESPLDRMAFSIAVSKLS--QANHFNAISQLLEELKTRPDLRQNERFHVHSIVL--YGQANMIDH 129 (401)
Q Consensus 54 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~ 129 (401)
.|..+-..|+...++. -|..+-.++. -.|+-..|.++-.+.. +-+..|..-+-.++.+ -.-.|+++.
T Consensus 68 sP~t~~Ryfr~rKRdr-------gyqALStGliAagAGda~lARkmt~~~~--~llssDqepLIhlLeAQaal~eG~~~~ 138 (531)
T COG3898 68 SPYTARRYFRERKRDR-------GYQALSTGLIAAGAGDASLARKMTARAS--KLLSSDQEPLIHLLEAQAALLEGDYED 138 (531)
T ss_pred CcHHHHHHHHHHHhhh-------HHHHHhhhhhhhccCchHHHHHHHHHHH--hhhhccchHHHHHHHHHHHHhcCchHH
Confidence 4566667777665543 2555554443 3567777777766544 1222223334444443 335688899
Q ss_pred HHHHHHHHhhCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 015726 130 AMQTFEEMDKYGLRQSVDALN--ALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAE 207 (401)
Q Consensus 130 a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 207 (401)
|.+-|+.|.. .|...... .|.-..-+.|+.+.|..+-+...... +.=...+...+...|..|+|+.|+++++.
T Consensus 139 Ar~kfeAMl~---dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A--p~l~WA~~AtLe~r~~~gdWd~AlkLvd~ 213 (531)
T COG3898 139 ARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA--PQLPWAARATLEARCAAGDWDGALKLVDA 213 (531)
T ss_pred HHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc--cCCchHHHHHHHHHHhcCChHHHHHHHHH
Confidence 9999988875 23332221 12222346788888887777664331 22345677888888888999999988887
Q ss_pred HHhCC-CCCCHHh--HHHHHHHHH---ccCChHHHHHHHHHHHHcCCCCCch-hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015726 208 MRRKS-IRPNATD--FGLLLAGFY---KEHKYEDVGKVLQMMEKCGIASGVN-VYNIRIQSLCKLKRSEEAKALLDGMLS 280 (401)
Q Consensus 208 ~~~~~-~~~~~~~--~~~ll~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~ 280 (401)
-+... +.++..- -..|+.+-. -..+...|...-.+..+. .|+.. .--.-..++.+.|+..++-.+++.+-+
T Consensus 214 ~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK 291 (531)
T COG3898 214 QRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWK 291 (531)
T ss_pred HHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHh
Confidence 65432 3444321 222332211 123455555555555443 44432 223345677888888888888888888
Q ss_pred CCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH
Q 015726 281 RGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNG-GCEP-DSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFS 358 (401)
Q Consensus 281 ~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 358 (401)
....|+. +. +..+.+.|+. +..-+++..+. .++| +......+..+-...|++..|..--+.... ..|...
T Consensus 292 ~ePHP~i--a~--lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres 363 (531)
T COG3898 292 AEPHPDI--AL--LYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRES 363 (531)
T ss_pred cCCChHH--HH--HHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhh
Confidence 7555543 22 2223445543 33333333221 1334 455666667777788888877776665553 367777
Q ss_pred HHHHHHHHHHc-cCCHHHHHHHHHHHHhc
Q 015726 359 TMKSLVTGLAS-ISKVAEANELIGLMKKR 386 (401)
Q Consensus 359 ~~~~l~~~~~~-~g~~~~a~~~~~~~~~~ 386 (401)
.|..|.+.-.. .||-.++...+-+..+.
T Consensus 364 ~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 364 AYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 88777776644 48888888887777654
No 170
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.80 E-value=0.0018 Score=50.90 Aligned_cols=94 Identities=7% Similarity=0.031 Sum_probs=67.5
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHH
Q 015726 109 QNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQS--VDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYN 186 (401)
Q Consensus 109 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 186 (401)
.....+..+...+...|++++|...|++..+.+..+. ...+..+...+.+.|++++|...+++..+.. +-+...+.
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~ 110 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN--PKQPSALN 110 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHH
Confidence 3355677777888889999999999998876542222 4577788888899999999999998887542 33455666
Q ss_pred HHHHHHHhcCChhHHHHH
Q 015726 187 KVIKSFCESGDSSSVYSI 204 (401)
Q Consensus 187 ~l~~~~~~~~~~~~a~~~ 204 (401)
.+...+...|+...+..-
T Consensus 111 ~lg~~~~~~g~~~~a~~~ 128 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGD 128 (172)
T ss_pred HHHHHHHHcCChHhHhhC
Confidence 677777777765444433
No 171
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.80 E-value=0.019 Score=49.70 Aligned_cols=106 Identities=15% Similarity=0.099 Sum_probs=77.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 015726 254 VYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLC 333 (401)
Q Consensus 254 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 333 (401)
+.+..|.-+...|+...|.++-.+.. -|+..-|...+.+++..++|++-.++... +-++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 45555666677888888888766653 46888888889999999999887776432 223467888889999
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 015726 334 QGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANEL 379 (401)
Q Consensus 334 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 379 (401)
+.|+..+|..++.+ ++ +..-+..|.+.|++.+|.+.
T Consensus 249 ~~~~~~eA~~yI~k-----~~-----~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 249 KYGNKKEASKYIPK-----IP-----DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HCCCHHHHHHHHHh-----CC-----hHHHHHHHHHCCCHHHHHHH
Confidence 99999888888876 11 24456777888888888665
No 172
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.76 E-value=0.0018 Score=48.82 Aligned_cols=101 Identities=9% Similarity=0.019 Sum_probs=75.9
Q ss_pred cHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 015726 74 DRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALL 153 (401)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 153 (401)
+....-.+...+...|++++|..+|+-+.... +.+...|-.|..++-..|++++|+..|......+ +.++..+-.+.
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D--p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag 110 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD--AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHH
Confidence 34455556666778888888888888877332 3445677778888888888888888888887776 46777788888
Q ss_pred HHHHhcCCHHHHHHHHHhchhhcC
Q 015726 154 LGCILSKNYEEVKRIFTEFPKVYG 177 (401)
Q Consensus 154 ~~~~~~~~~~~a~~~~~~~~~~~~ 177 (401)
.++...|+.+.|.+.|+..+...+
T Consensus 111 ~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 111 ECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHhc
Confidence 888888888888888887765543
No 173
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.76 E-value=0.0011 Score=58.78 Aligned_cols=91 Identities=9% Similarity=0.038 Sum_probs=60.9
Q ss_pred HHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 015726 82 VSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKN 161 (401)
Q Consensus 82 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 161 (401)
...+...|++++|++.|++..... +.+...+..+..+|...|++++|+..++++++.. +.+...|..+..+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence 445556677777777777776332 3335566666777777777777777777777664 4456666667777777777
Q ss_pred HHHHHHHHHhchhh
Q 015726 162 YEEVKRIFTEFPKV 175 (401)
Q Consensus 162 ~~~a~~~~~~~~~~ 175 (401)
+++|+..|++..+.
T Consensus 86 ~~eA~~~~~~al~l 99 (356)
T PLN03088 86 YQTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHHh
Confidence 77777777777543
No 174
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.75 E-value=0.001 Score=52.09 Aligned_cols=64 Identities=8% Similarity=-0.065 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHhchh
Q 015726 111 ERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQ--SVDALNALLLGCILSKNYEEVKRIFTEFPK 174 (401)
Q Consensus 111 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 174 (401)
...+..+...+...|++++|+..|++.......+ ...++..+...+...|++++|+..+++..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445555556666666677666666665442111 123556666666666666666666666653
No 175
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.74 E-value=0.00026 Score=45.85 Aligned_cols=62 Identities=16% Similarity=0.295 Sum_probs=41.4
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHH
Q 015726 123 QANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKV 188 (401)
Q Consensus 123 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 188 (401)
..|++++|+++|+++.+.. +.+...+..+..+|.+.|++++|.++++++... .|+...|..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~---~~~~~~~~~l 64 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ---DPDNPEYQQL 64 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG---GTTHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CcCHHHHHHH
Confidence 5677777777777776664 446666777777777777777777777777654 5554444433
No 176
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.73 E-value=0.0013 Score=49.50 Aligned_cols=95 Identities=11% Similarity=-0.043 Sum_probs=63.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc
Q 015726 255 YNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQ 334 (401)
Q Consensus 255 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 334 (401)
.-.+..-+...|++++|.++|+.+...... +..-|..|..++...|++++|+..|....... +-|+..+-.+..++..
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHH
Confidence 334444555667777777777777665322 45566667777777777777777777777654 3456666777777777
Q ss_pred cCCHHHHHHHHHHHHHC
Q 015726 335 GGEYETALKVCRASMAK 351 (401)
Q Consensus 335 ~g~~~~a~~~~~~~~~~ 351 (401)
.|+.+.|.+.|+..+..
T Consensus 116 lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 116 CDNVCYAIKALKAVVRI 132 (157)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 77777777777766554
No 177
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.72 E-value=0.026 Score=48.95 Aligned_cols=126 Identities=12% Similarity=0.135 Sum_probs=93.5
Q ss_pred HHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 015726 217 ATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHG 296 (401)
Q Consensus 217 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~ 296 (401)
..+.+..|.-+...|+...|.++-.+. . .|+...|...+.+++..++|++..++-.. + -++..|..++.+
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~ 246 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEA 246 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHH
Confidence 345666677778889988888776655 2 47888999999999999999988876432 1 245788999999
Q ss_pred HhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 015726 297 FGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLA 368 (401)
Q Consensus 297 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 368 (401)
|.+.|+..+|..+...+ .+..-+..|.+.|++.+|.+.-.+. -|...+..+...+-
T Consensus 247 ~~~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~~------kd~~~L~~i~~~~~ 302 (319)
T PF04840_consen 247 CLKYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFKE------KDIDLLKQILKRCP 302 (319)
T ss_pred HHHCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHHc------CCHHHHHHHHHHCC
Confidence 99999999999888762 2356678889999999998875432 24455555554443
No 178
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.71 E-value=0.0066 Score=46.69 Aligned_cols=161 Identities=10% Similarity=0.038 Sum_probs=111.4
Q ss_pred HHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHH
Q 015726 42 KRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLY 121 (401)
Q Consensus 42 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 121 (401)
-+.+...+++.-||++.+.-...... ..|+..--..+..++.+.|+..+|...|++.. .+.+..|......+.++.
T Consensus 59 a~~~~~a~~q~ldP~R~~Rea~~~~~---~ApTvqnr~rLa~al~elGr~~EA~~hy~qal-sG~fA~d~a~lLglA~Aq 134 (251)
T COG4700 59 AHTLLMALQQKLDPERHLREATEELA---IAPTVQNRYRLANALAELGRYHEAVPHYQQAL-SGIFAHDAAMLLGLAQAQ 134 (251)
T ss_pred hHHHHHHHHHhcChhHHHHHHHHHHh---hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHh-ccccCCCHHHHHHHHHHH
Confidence 34455566666677776554433322 33466667778889999999999999999988 555666788888888888
Q ss_pred HhcCChHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhH
Q 015726 122 GQANMIDHAMQTFEEMDKYGL-RQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSS 200 (401)
Q Consensus 122 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 200 (401)
...+++..|...++.+-+... ..++.+.-.+.+.+...|...+|+.-|+....- -|+...-......+.+.|+.++
T Consensus 135 fa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~---ypg~~ar~~Y~e~La~qgr~~e 211 (251)
T COG4700 135 FAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISY---YPGPQARIYYAEMLAKQGRLRE 211 (251)
T ss_pred HhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh---CCCHHHHHHHHHHHHHhcchhH
Confidence 899999999999998877531 012233445677888889999999999888644 5665544444455567776666
Q ss_pred HHHHHHHHH
Q 015726 201 VYSILAEMR 209 (401)
Q Consensus 201 a~~~~~~~~ 209 (401)
+..-+.++.
T Consensus 212 a~aq~~~v~ 220 (251)
T COG4700 212 ANAQYVAVV 220 (251)
T ss_pred HHHHHHHHH
Confidence 655544443
No 179
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.71 E-value=0.0025 Score=54.63 Aligned_cols=32 Identities=6% Similarity=-0.142 Sum_probs=22.7
Q ss_pred hhhchhHHHHHHHHHHhcCCChhHHHHHhhhc
Q 015726 34 AALTIKEKKRATIARLKSESNPFRILDICCGA 65 (401)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 65 (401)
..-.....+..+...++..+++++|.+.|..+
T Consensus 30 ~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kA 61 (282)
T PF14938_consen 30 DYEEAADLYEKAANCFKLAKDWEKAAEAYEKA 61 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhccchhHHHHHHH
Confidence 34455667888888888888888888777654
No 180
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.71 E-value=0.0012 Score=52.22 Aligned_cols=104 Identities=12% Similarity=0.128 Sum_probs=61.1
Q ss_pred CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 015726 143 RQSVDALNALLLGCIL-----SKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNA 217 (401)
Q Consensus 143 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 217 (401)
..+..+|..+++.|.+ .|.++-....+..| .++|+.-|..+|+.|++.+=+ |.+- -..+|+.+--
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M-~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~------- 113 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKM-DEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFM------- 113 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHH-HHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhc-------
Confidence 4566777777777653 35666666666676 556777777777777766543 2211 0111111100
Q ss_pred HhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcC
Q 015726 218 TDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLK 266 (401)
Q Consensus 218 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 266 (401)
- .-.+-+-|++++++|...|+-||..++..+++.+++.+
T Consensus 114 --------h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 114 --------H--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred --------c--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 0 11234566777777777777777777777777776554
No 181
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.67 E-value=0.0011 Score=55.60 Aligned_cols=100 Identities=14% Similarity=0.135 Sum_probs=57.0
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCH----hhHHHHHHHHHccCCHHHHHHHHHHHHHCC--CCCCHHHHHHH
Q 015726 290 YKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDS----YCFFMFTYFLCQGGEYETALKVCRASMAKG--WVPHFSTMKSL 363 (401)
Q Consensus 290 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l 363 (401)
|...+..+.+.|++++|...|+.+++. .|+. ..+..+...|...|++++|...|+.+.+.. -+.....+..+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 444443334456666666666666654 2332 345556666666666666666666666541 11223444445
Q ss_pred HHHHHccCCHHHHHHHHHHHHhcCCCCc
Q 015726 364 VTGLASISKVAEANELIGLMKKRFPKSG 391 (401)
Q Consensus 364 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 391 (401)
...+...|+.++|.++++++.+.+|.+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 5556666777777777777766666543
No 182
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.66 E-value=7e-05 Score=48.57 Aligned_cols=56 Identities=18% Similarity=0.283 Sum_probs=32.2
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC
Q 015726 334 QGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKS 390 (401)
Q Consensus 334 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 390 (401)
+.|++++|.++++++.... +-+......+..+|.+.|++++|.++++++....|.+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 4566666666666665543 3355555566666666666666666666666555544
No 183
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.64 E-value=0.0029 Score=49.58 Aligned_cols=97 Identities=10% Similarity=0.030 Sum_probs=71.1
Q ss_pred cHhHHHHHHHHHHhCCCchHHHHHHHHhhhCC-CCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 015726 74 DRMAFSIAVSKLSQANHFNAISQLLEELKTRP-DLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNAL 152 (401)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 152 (401)
....|..+...+...|++++|...|+...... +......++..+...+...|++++|++.++...+.. +....++..+
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~l 112 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHH
Confidence 45567888888889999999999999987332 222224578888999999999999999999988764 4445666666
Q ss_pred HHHHH-------hcCCHHHHHHHHHh
Q 015726 153 LLGCI-------LSKNYEEVKRIFTE 171 (401)
Q Consensus 153 ~~~~~-------~~~~~~~a~~~~~~ 171 (401)
...+. ..|+++.|...+++
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 66666 66676655444443
No 184
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.64 E-value=0.00029 Score=45.79 Aligned_cols=66 Identities=17% Similarity=0.168 Sum_probs=44.9
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHhcCC
Q 015726 322 SYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASIS-KVAEANELIGLMKKRFP 388 (401)
Q Consensus 322 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~ 388 (401)
...|..+...+...|++++|+..|++.++.+ +.+...+..+..+|...| ++++|++.+++..+..|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4566666777777777777777777777664 345666677777777777 57777777777666543
No 185
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.63 E-value=0.036 Score=51.51 Aligned_cols=231 Identities=6% Similarity=0.011 Sum_probs=139.2
Q ss_pred HHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHH----
Q 015726 42 KRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHS---- 117 (401)
Q Consensus 42 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l---- 117 (401)
++....++...| .+.|.++.+. .|-+..|..+.......-.++.|...|-.....+++.. ..-...+
T Consensus 667 lrD~~~Lve~vg-ledA~qfiEd-------nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~-vkrl~~i~s~~ 737 (1189)
T KOG2041|consen 667 LRDVMNLVEAVG-LEDAIQFIED-------NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKL-VKRLRTIHSKE 737 (1189)
T ss_pred hhhHHHHHHHhc-hHHHHHHHhc-------CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhH-HHHhhhhhhHH
Confidence 344444444444 5566666543 23456888888888888888888888877665444422 1111111
Q ss_pred ---HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHh
Q 015726 118 ---IVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCE 194 (401)
Q Consensus 118 ---i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 194 (401)
...-+--|+|++|.++|-+|-++++ .+..+.+.|+|-.+.++++.--....-.--..+|+.+...+..
T Consensus 738 ~q~aei~~~~g~feeaek~yld~drrDL---------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~ 808 (1189)
T KOG2041|consen 738 QQRAEISAFYGEFEEAEKLYLDADRRDL---------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAE 808 (1189)
T ss_pred HHhHhHhhhhcchhHhhhhhhccchhhh---------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHH
Confidence 1122234889999999988875432 3667778899988888876532110011223578888888888
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHH
Q 015726 195 SGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKAL 274 (401)
Q Consensus 195 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 274 (401)
...|++|.+.|..-.. -...+.++.+..++++.+.+...+ +.+....-.+.+++.+.|.-++|.+.
T Consensus 809 ~~~We~A~~yY~~~~~---------~e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a 874 (1189)
T KOG2041|consen 809 MMEWEEAAKYYSYCGD---------TENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEA 874 (1189)
T ss_pred HHHHHHHHHHHHhccc---------hHhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHH
Confidence 8889999988876322 123566666666666655554443 33455566677777777777777666
Q ss_pred HHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 015726 275 LDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASM 313 (401)
Q Consensus 275 ~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 313 (401)
+-+-. .| .+.+..|...+++.+|.++-+..
T Consensus 875 ~Lr~s----~p-----kaAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 875 YLRRS----LP-----KAAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred HHhcc----Cc-----HHHHHHHHHHHHHHHHHHHHHhc
Confidence 53321 11 12345556666666666665543
No 186
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.58 E-value=0.056 Score=50.34 Aligned_cols=51 Identities=6% Similarity=0.036 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 015726 147 DALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAE 207 (401)
Q Consensus 147 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 207 (401)
...-.+..++.+.|.-++|.+.|-+.. .|. ..+..|...++|.+|.++-+.
T Consensus 853 ~llp~~a~mf~svGMC~qAV~a~Lr~s-----~pk-----aAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 853 ELLPVMADMFTSVGMCDQAVEAYLRRS-----LPK-----AAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred chHHHHHHHHHhhchHHHHHHHHHhcc-----CcH-----HHHHHHHHHHHHHHHHHHHHh
Confidence 344445555556666666555554432 111 233445555555555555443
No 187
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.58 E-value=0.0021 Score=54.00 Aligned_cols=101 Identities=12% Similarity=0.057 Sum_probs=67.7
Q ss_pred HhHHHHHHHHHHhCCCchHHHHHHHHhhh-CCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCC--CCCHHHHHH
Q 015726 75 RMAFSIAVSKLSQANHFNAISQLLEELKT-RPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGL--RQSVDALNA 151 (401)
Q Consensus 75 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ 151 (401)
...|...+....+.|++++|+..|+.+.. .|+.+-....+..+...|...|++++|...|+.+.+.-. +.....+..
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 34566666555667888888888887773 343332245667777788888888888888888775421 112444555
Q ss_pred HHHHHHhcCCHHHHHHHHHhchhh
Q 015726 152 LLLGCILSKNYEEVKRIFTEFPKV 175 (401)
Q Consensus 152 l~~~~~~~~~~~~a~~~~~~~~~~ 175 (401)
+...+...|+.++|..+|+++.+.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 566677788888888888888765
No 188
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.0059 Score=50.92 Aligned_cols=104 Identities=12% Similarity=0.073 Sum_probs=64.8
Q ss_pred CHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcc---CCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 015726 286 NLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQG---GEYETALKVCRASMAKGWVPHFSTMKS 362 (401)
Q Consensus 286 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~ 362 (401)
|...|..|...|...|+++.|..-|.+..+.. .+|...+..+..++... ....++..+|+++...+ +-|+.....
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHH
Confidence 56677777777777777777777777666542 23444444444443322 23456677777776654 445666666
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcCCCCc
Q 015726 363 LVTGLASISKVAEANELIGLMKKRFPKSG 391 (401)
Q Consensus 363 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 391 (401)
|...+...|++.+|...|+.|.+..|++.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 66777777777777777777777665543
No 189
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.53 E-value=0.01 Score=55.25 Aligned_cols=140 Identities=10% Similarity=-0.003 Sum_probs=78.7
Q ss_pred CCCCchhHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHhcC--------CChHHHHHHHHHH
Q 015726 248 IASGVNVYNIRIQSLCKL-----KRSEEAKALLDGMLSRGIKPN-LDTYKHLIHGFGKE--------GNLEGAKKLFASM 313 (401)
Q Consensus 248 ~~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~--------~~~~~a~~~~~~m 313 (401)
.+.+...|...+.+.... ++...|..+|++..+. .|+ ...|..+..++... .+...+.+.....
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 344556666666664432 2255677777777765 333 23333332222211 1122333333333
Q ss_pred HhC-CCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCc
Q 015726 314 TNG-GCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSG 391 (401)
Q Consensus 314 ~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 391 (401)
... ....+...|..+.-.....|++++|...++++.+.+ |+...|..+...+...|+.++|.+.+++.....|.+.
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 222 123344566666555556677777777777777664 5667777777777777777777777777776655433
No 190
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.51 E-value=0.026 Score=43.53 Aligned_cols=125 Identities=19% Similarity=0.159 Sum_probs=62.2
Q ss_pred CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCC---CCCCHhhH
Q 015726 249 ASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGG---CEPDSYCF 325 (401)
Q Consensus 249 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~ 325 (401)
.|+...--.+..+....|+..+|...|++...--..-|....-.+.++....+++..|...++++.+.. -.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 344444455555555556666665555555443233344445555555555555555555555555432 1122 23
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 015726 326 FMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEAN 377 (401)
Q Consensus 326 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 377 (401)
..+.+.+...|...+|+.-|+...+. -|+...-......+.+.|+.+++.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHH
Confidence 34445555556665566655555544 234433333444455555444443
No 191
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.50 E-value=0.03 Score=45.31 Aligned_cols=59 Identities=15% Similarity=0.200 Sum_probs=31.8
Q ss_pred HHHHHhCCCchHHHHHHHHhh-hCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 015726 82 VSKLSQANHFNAISQLLEELK-TRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKY 140 (401)
Q Consensus 82 ~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 140 (401)
...+...|++.+|++.|+.+. ..|..+.-....-.++.++.+.|+++.|...+++..+.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344456666666666666666 33333333444555556666666666666666665543
No 192
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.49 E-value=0.011 Score=42.81 Aligned_cols=90 Identities=14% Similarity=0.057 Sum_probs=54.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCC---H-HhHHHHHH
Q 015726 117 SIVLYGQANMIDHAMQTFEEMDKYGLRQS--VDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPN---S-ETYNKVIK 190 (401)
Q Consensus 117 li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~-~~~~~l~~ 190 (401)
...++-..|+.++|+.+|++..+.|.... ...+..+...+...|++++|+.++++...+ .|+ . .....+..
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~---~p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE---FPDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCccccHHHHHHHHH
Confidence 44456667777777777777777665433 234445556677777777777777777654 233 1 22222334
Q ss_pred HHHhcCChhHHHHHHHHHH
Q 015726 191 SFCESGDSSSVYSILAEMR 209 (401)
Q Consensus 191 ~~~~~~~~~~a~~~~~~~~ 209 (401)
++...|+.++|++.+-...
T Consensus 84 ~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHCCCHHHHHHHHHHHH
Confidence 5566677777777765544
No 193
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.48 E-value=0.024 Score=45.92 Aligned_cols=22 Identities=18% Similarity=0.172 Sum_probs=10.2
Q ss_pred HHHHhcCCChHHHHHHHHHHHh
Q 015726 294 IHGFGKEGNLEGAKKLFASMTN 315 (401)
Q Consensus 294 i~~~~~~~~~~~a~~~~~~m~~ 315 (401)
...|.+.|.+..|..-++.+++
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~ 169 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIE 169 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHH
Confidence 3344455555555555555444
No 194
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.47 E-value=0.00073 Score=43.22 Aligned_cols=54 Identities=19% Similarity=0.080 Sum_probs=26.6
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhch
Q 015726 119 VLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFP 173 (401)
Q Consensus 119 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 173 (401)
..+...|++++|.+.|+++++.. +-+...+..+..++...|++++|...|+++.
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33445555555555555555443 2344445555555555555555555555554
No 195
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.44 E-value=0.0026 Score=52.77 Aligned_cols=95 Identities=16% Similarity=0.222 Sum_probs=52.7
Q ss_pred HHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 015726 85 LSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEE 164 (401)
Q Consensus 85 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 164 (401)
+.+.+++++|++.|.+.+.. .|.|...|..-..+|.+.|.++.|++-.+..+..+ +....+|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHH
Confidence 44555666666666665522 23444555555666666666666666665555543 3334555566666666666666
Q ss_pred HHHHHHhchhhcCCCCCHHhH
Q 015726 165 VKRIFTEFPKVYGIEPNSETY 185 (401)
Q Consensus 165 a~~~~~~~~~~~~~~~~~~~~ 185 (401)
|++.|++.. .+.|+..+|
T Consensus 168 A~~aykKaL---eldP~Ne~~ 185 (304)
T KOG0553|consen 168 AIEAYKKAL---ELDPDNESY 185 (304)
T ss_pred HHHHHHhhh---ccCCCcHHH
Confidence 666665554 235555544
No 196
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.022 Score=49.51 Aligned_cols=88 Identities=14% Similarity=0.063 Sum_probs=48.3
Q ss_pred hcCCChHHHHHHHHHHHhC---CCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 015726 298 GKEGNLEGAKKLFASMTNG---GCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVA 374 (401)
Q Consensus 298 ~~~~~~~~a~~~~~~m~~~---~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 374 (401)
.+.|++..|.+.|.+.+.. .++|+...|.....+..+.|+.++|+.-.++..+.+ ..-...+..-..++...++|+
T Consensus 260 fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~e 338 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKWE 338 (486)
T ss_pred hhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777766643 344555556555666666677777776666655432 001112222223344456666
Q ss_pred HHHHHHHHHHhc
Q 015726 375 EANELIGLMKKR 386 (401)
Q Consensus 375 ~a~~~~~~~~~~ 386 (401)
+|.+-+++..+.
T Consensus 339 ~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 339 EAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHhh
Confidence 666666666554
No 197
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.39 E-value=0.018 Score=53.58 Aligned_cols=143 Identities=10% Similarity=0.044 Sum_probs=92.8
Q ss_pred CCCCHHhHHHHHHHHHccC-----ChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhc--------CCHHHHHHHHHHHH
Q 015726 213 IRPNATDFGLLLAGFYKEH-----KYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKL--------KRSEEAKALLDGML 279 (401)
Q Consensus 213 ~~~~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--------~~~~~a~~~~~~~~ 279 (401)
.+.+...|...+++..... +...|..+|++..+.. +-....|..+..++... ++...+.+...+..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 4556777877777654322 2567888888888763 22334444433333221 12233444444333
Q ss_pred HC-CCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH
Q 015726 280 SR-GIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFS 358 (401)
Q Consensus 280 ~~-~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 358 (401)
.. ....+...|.++.......|++++|...++++.+.+ |+...|..+...+...|+.++|.+.++++...+ |...
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~--P~~p 487 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR--PGEN 487 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCc
Confidence 32 123345677777666667899999999999998864 688889999999999999999999999887663 4444
Q ss_pred HH
Q 015726 359 TM 360 (401)
Q Consensus 359 ~~ 360 (401)
+|
T Consensus 488 t~ 489 (517)
T PRK10153 488 TL 489 (517)
T ss_pred hH
Confidence 43
No 198
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.36 E-value=0.022 Score=46.51 Aligned_cols=155 Identities=14% Similarity=0.030 Sum_probs=93.4
Q ss_pred HHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 015726 82 VSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKN 161 (401)
Q Consensus 82 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 161 (401)
+..+......+.-+.+|++=. ..+.+.++..+.-.|.+.-...++++.++...+.++.....|.+.-.+.||
T Consensus 156 i~~~e~~~~~ESsv~lW~KRl--------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD 227 (366)
T KOG2796|consen 156 LANLEQGLAEESSIRLWRKRL--------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGD 227 (366)
T ss_pred HHHHHhccchhhHHHHHHHHH--------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhccc
Confidence 333333333355666666533 234555566666667777777777777776655666777777777777788
Q ss_pred HHHHHHHHHhchhhcCCCCCHHhHHHH-----HHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHH
Q 015726 162 YEEVKRIFTEFPKVYGIEPNSETYNKV-----IKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDV 236 (401)
Q Consensus 162 ~~~a~~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 236 (401)
.+.|...|++..+..+ ..|..+++.+ ...|.-.+++..|...+.+..... +.|....|.-.-+..-.|+..+|
T Consensus 228 ~k~a~~yf~~vek~~~-kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DA 305 (366)
T KOG2796|consen 228 IKTAEKYFQDVEKVTQ-KLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDA 305 (366)
T ss_pred HHHHHHHHHHHHHHHh-hhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHH
Confidence 8777777776644322 3343333333 233455667777777777765543 23444445444444556777777
Q ss_pred HHHHHHHHHc
Q 015726 237 GKVLQMMEKC 246 (401)
Q Consensus 237 ~~~~~~~~~~ 246 (401)
.+.++.|.+.
T Consensus 306 iK~~e~~~~~ 315 (366)
T KOG2796|consen 306 LKQLEAMVQQ 315 (366)
T ss_pred HHHHHHHhcc
Confidence 7777777775
No 199
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.30 E-value=0.07 Score=43.69 Aligned_cols=131 Identities=9% Similarity=0.105 Sum_probs=72.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHH----
Q 015726 149 LNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLL---- 224 (401)
Q Consensus 149 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll---- 224 (401)
.+.++.++...|.+.-..+++.+..+. ..+.+......+++.-.+.||.+.|..+|++..+..-+.|..+++.++
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~-~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKY-YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHh-CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 344555555566666666666666543 223445555666666666777777777777665543344444444333
Q ss_pred -HHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 015726 225 -AGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSR 281 (401)
Q Consensus 225 -~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 281 (401)
..+.-.+++..+...+.++...+ +.+....|.-.-+..-.|+..+|.+.++.|...
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 23344455566666665555543 233444444444444456666666666666655
No 200
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.29 E-value=0.024 Score=41.17 Aligned_cols=54 Identities=7% Similarity=0.065 Sum_probs=25.9
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCC--HHhHHHHHHHHHccCChHHHHHHHHHHHH
Q 015726 192 FCESGDSSSVYSILAEMRRKSIRPN--ATDFGLLLAGFYKEHKYEDVGKVLQMMEK 245 (401)
Q Consensus 192 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 245 (401)
+-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..+++....
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344555555555555555443322 12333344445555555555555555444
No 201
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.25 E-value=0.12 Score=45.67 Aligned_cols=134 Identities=15% Similarity=0.207 Sum_probs=103.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhH-HHHHH
Q 015726 253 NVYNIRIQSLCKLKRSEEAKALLDGMLSRG-IKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCF-FMFTY 330 (401)
Q Consensus 253 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~li~ 330 (401)
.+|...+.+..+..-++.|..+|-+..+.| +.+++..+++++..++ .|+..-|..+|+--... -||...| ...+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 456667777777888999999999999988 6788899999999875 57888999999875554 3554444 55677
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC
Q 015726 331 FLCQGGEYETALKVCRASMAKGWVPH--FSTMKSLVTGLASISKVAEANELIGLMKKRFPKS 390 (401)
Q Consensus 331 ~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 390 (401)
.+...++-+.|..+|+..... +..+ ...|..++.--..-|+...+..+=+.+.+.+|..
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 778889999999999965543 1222 4688899998888999999988888888877643
No 202
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.25 E-value=0.0061 Score=44.68 Aligned_cols=55 Identities=13% Similarity=0.105 Sum_probs=41.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhc
Q 015726 141 GLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCES 195 (401)
Q Consensus 141 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 195 (401)
...|+..+..+++.+|+..|++..|.++.+.+.+.++++-+...|..|+.-....
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 3567788888888888888888888888888888888777777777777655433
No 203
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.24 E-value=0.014 Score=44.49 Aligned_cols=58 Identities=16% Similarity=0.305 Sum_probs=28.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 015726 149 LNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEM 208 (401)
Q Consensus 149 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 208 (401)
...++..+...|++++|..+.+.+.... +.|...|..+|.+|...|+...|.+.|+++
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d--P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD--PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS--TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3344444555555555555555554432 334445555555555555555555555544
No 204
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.24 E-value=0.0017 Score=42.64 Aligned_cols=59 Identities=19% Similarity=0.129 Sum_probs=32.7
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC
Q 015726 331 FLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKS 390 (401)
Q Consensus 331 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 390 (401)
.|.+.+++++|.++++++...+ +.++..+......+.+.|++++|.+.++...+..|.+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~ 62 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSPDD 62 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence 4455556666666666555553 3344555555555556666666666666665554433
No 205
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.23 E-value=0.0048 Score=53.41 Aligned_cols=133 Identities=11% Similarity=0.003 Sum_probs=82.8
Q ss_pred HhHHHHHHHHHccCChHHHHHHHHHH----HHcCCC-CCchhHHHHHHHHHhcCCHHHHHHHHHHHHH----CCC-CcCH
Q 015726 218 TDFGLLLAGFYKEHKYEDVGKVLQMM----EKCGIA-SGVNVYNIRIQSLCKLKRSEEAKALLDGMLS----RGI-KPNL 287 (401)
Q Consensus 218 ~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~-~p~~ 287 (401)
..|..+.+.|.-.|+++.|+...+.- .+.|-. .-...+..+..++.-.|+++.|.+.|+.-.. .|- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 45666777777778888887665432 222211 1224566677777778888888887775432 221 1233
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHh----C-CCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 015726 288 DTYKHLIHGFGKEGNLEGAKKLFASMTN----G-GCEPDSYCFFMFTYFLCQGGEYETALKVCRASMA 350 (401)
Q Consensus 288 ~~~~~li~~~~~~~~~~~a~~~~~~m~~----~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 350 (401)
.+..+|...|.-..++++|+.++.+-+. . ...-....+.+|..++...|..++|+.+.+.-.+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4566677777777778888877765332 1 1122345677788888888888888877665443
No 206
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.19 E-value=0.12 Score=45.46 Aligned_cols=94 Identities=6% Similarity=0.018 Sum_probs=55.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCC---CCCCHHhHHHHHHHHHc---cCChHHHHHHHHHHHHcCCCCCchhHHHHHH
Q 015726 187 KVIKSFCESGDSSSVYSILAEMRRKS---IRPNATDFGLLLAGFYK---EHKYEDVGKVLQMMEKCGIASGVNVYNIRIQ 260 (401)
Q Consensus 187 ~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 260 (401)
.++-.|....+++...++++.+.... +.-....-....-++.+ .|+.++|.+++..+....-.++..+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 44445777788888888888886642 11122222233445555 7788888888877555545667777777766
Q ss_pred HHHhc---------CCHHHHHHHHHHHHH
Q 015726 261 SLCKL---------KRSEEAKALLDGMLS 280 (401)
Q Consensus 261 ~~~~~---------~~~~~a~~~~~~~~~ 280 (401)
.|-.. ...++|...|.+.-+
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe 254 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFE 254 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHc
Confidence 65321 124455555554444
No 207
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.16 E-value=0.0024 Score=41.36 Aligned_cols=59 Identities=20% Similarity=0.186 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHhc
Q 015726 113 FHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSK-NYEEVKRIFTEF 172 (401)
Q Consensus 113 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~ 172 (401)
++..+...+...|++++|+..|++..+.. +.+...|..+..++...| ++++|++.+++.
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 33444444444444444444444444433 223344444444444444 344444444443
No 208
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=97.04 E-value=0.069 Score=38.71 Aligned_cols=65 Identities=12% Similarity=0.165 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 015726 288 DTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGW 353 (401)
Q Consensus 288 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 353 (401)
......+......|+-+.-.+++.++.+.+ .+++.....+..+|.+.|+..++.+++.++.+.|+
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 334445566666777777777777766432 56666667777777777777777777777777764
No 209
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.03 E-value=0.0047 Score=45.26 Aligned_cols=85 Identities=16% Similarity=0.112 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHHhcCCChHHHHHHHHHHHhC---------------CCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 015726 286 NLDTYKHLIHGFGKEGNLEGAKKLFASMTNG---------------GCEPDSYCFFMFTYFLCQGGEYETALKVCRASMA 350 (401)
Q Consensus 286 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---------------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 350 (401)
|..++..+|.++++.|+.+....+++..-.- ...|+..+..+++.+|+..|++..|+++++...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4567888888888999988888888765321 2346667777777777777777777777776655
Q ss_pred C-CCCCCHHHHHHHHHHHHcc
Q 015726 351 K-GWVPHFSTMKSLVTGLASI 370 (401)
Q Consensus 351 ~-~~~~~~~~~~~l~~~~~~~ 370 (401)
. +++.+..+|..|++-....
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHHh
Confidence 5 5666667777777655443
No 210
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.025 Score=47.28 Aligned_cols=101 Identities=8% Similarity=-0.010 Sum_probs=73.7
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHhchhhcCCCCCHHh
Q 015726 108 RQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSK---NYEEVKRIFTEFPKVYGIEPNSET 184 (401)
Q Consensus 108 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~ 184 (401)
|.|..-|-.|..+|...|+++.|...|.+..+.. +++...+..+..++..+. ...++..+|+++.+.. +-|+.+
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D--~~~ira 229 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD--PANIRA 229 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC--CccHHH
Confidence 4445678888888888888888888888887765 556777777766655432 4567888888887542 445556
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhC
Q 015726 185 YNKVIKSFCESGDSSSVYSILAEMRRK 211 (401)
Q Consensus 185 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 211 (401)
...|...+...|++.+|...|+.|.+.
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 666777788888888888888888876
No 211
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.97 E-value=0.0063 Score=39.87 Aligned_cols=54 Identities=13% Similarity=0.068 Sum_probs=28.0
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchh
Q 015726 120 LYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPK 174 (401)
Q Consensus 120 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 174 (401)
.|.+.+++++|.++++.+.+.+ +.+...+.....++...|++++|.+.|+...+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3445555555555555555543 33444444455555555555555555555543
No 212
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.96 E-value=0.0015 Score=37.89 Aligned_cols=40 Identities=18% Similarity=0.265 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcccchhc
Q 015726 358 STMKSLVTGLASISKVAEANELIGLMKKRFPKSGDMWNAA 397 (401)
Q Consensus 358 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 397 (401)
.++..+..+|...|++++|.++++++++..|.|...|..|
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence 3567788888888999999999998888888888877665
No 213
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.93 E-value=0.011 Score=45.03 Aligned_cols=57 Identities=19% Similarity=0.222 Sum_probs=27.6
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHH
Q 015726 291 KHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRAS 348 (401)
Q Consensus 291 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 348 (401)
..++..+...|++++|.++.+.+.... +-+...|..+|.+|...|+...|.++|+++
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 334444445555555555555555432 234445555555555555555555555543
No 214
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.92 E-value=0.036 Score=45.78 Aligned_cols=101 Identities=17% Similarity=0.236 Sum_probs=47.9
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhCCC--CCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCC--CCCCHHHHHHHH
Q 015726 289 TYKHLIHGFGKEGNLEGAKKLFASMTNGGC--EPDSYCFFMFTYFLCQGGEYETALKVCRASMAKG--WVPHFSTMKSLV 364 (401)
Q Consensus 289 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~ 364 (401)
.|+.-+..+ +.|++..|.+.|...++... .-....+-.|..++...|+++.|..+|..+.+.- -+--+..+-.|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 344444333 34445555555555554310 0112233444555555555555555555554431 111234444555
Q ss_pred HHHHccCCHHHHHHHHHHHHhcCCCC
Q 015726 365 TGLASISKVAEANELIGLMKKRFPKS 390 (401)
Q Consensus 365 ~~~~~~g~~~~a~~~~~~~~~~~~~~ 390 (401)
....+.|+.++|..+|+++.+.+|..
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 55555555666666666655555544
No 215
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.92 E-value=0.24 Score=43.12 Aligned_cols=289 Identities=11% Similarity=0.064 Sum_probs=185.7
Q ss_pred CCChhHHHHHhhhccCCCCCCccHhHHHHHHHH--HHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHH
Q 015726 52 ESNPFRILDICCGASLAPESPLDRMAFSIAVSK--LSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDH 129 (401)
Q Consensus 52 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 129 (401)
.||...|..+-..... -..-|...+..++.+ -.-.|+++.|.+-|+.|...|.... --+..|....-+.|..+.
T Consensus 97 AGda~lARkmt~~~~~--llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRl--lGLRgLyleAqr~Garea 172 (531)
T COG3898 97 AGDASLARKMTARASK--LLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRL--LGLRGLYLEAQRLGAREA 172 (531)
T ss_pred cCchHHHHHHHHHHHh--hhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHH--HhHHHHHHHHHhcccHHH
Confidence 4466666666544431 133344445555544 3457999999999999986554322 112233333457899999
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhH--HHHHHHHHh---cCChhHHHHH
Q 015726 130 AMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETY--NKVIKSFCE---SGDSSSVYSI 204 (401)
Q Consensus 130 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~---~~~~~~a~~~ 204 (401)
|.++-+...+.- +.-...+...+...+..|+|+.|+++++.-....-+.++..-- ..|+.+-.. ..+...|...
T Consensus 173 Ar~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~ 251 (531)
T COG3898 173 ARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDD 251 (531)
T ss_pred HHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 999888877654 4456788889999999999999999999886655566665432 233333221 2345556555
Q ss_pred HHHHHhCCCCCCHH-hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHC-C
Q 015726 205 LAEMRRKSIRPNAT-DFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSR-G 282 (401)
Q Consensus 205 ~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~ 282 (401)
-.+..+ +.||.. .-..-..++.+.|+..++-.+++.+=+....|+ .+ .+..+.+.|+. +..-+++..+. .
T Consensus 252 A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia--~lY~~ar~gdt--a~dRlkRa~~L~s 323 (531)
T COG3898 252 ALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IA--LLYVRARSGDT--ALDRLKRAKKLES 323 (531)
T ss_pred HHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HH--HHHHHhcCCCc--HHHHHHHHHHHHh
Confidence 544433 455543 233445788899999999999999977654443 33 22333455543 33333333322 1
Q ss_pred CCcC-HHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH-ccCCHHHHHHHHHHHHHCCCCC
Q 015726 283 IKPN-LDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLC-QGGEYETALKVCRASMAKGWVP 355 (401)
Q Consensus 283 ~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~-~~g~~~~a~~~~~~~~~~~~~~ 355 (401)
++|| ..+-..+.++-...|++..|..--+.... ..|....|..|.+.-. ..|+-.++...+.+..+.--.|
T Consensus 324 lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 324 LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred cCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 3444 56677778888889999988877666665 3688888888877654 4599999999998888764344
No 216
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.89 E-value=0.27 Score=43.27 Aligned_cols=29 Identities=7% Similarity=-0.118 Sum_probs=18.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 015726 253 NVYNIRIQSLCKLKRSEEAKALLDGMLSR 281 (401)
Q Consensus 253 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 281 (401)
..+.+++.++.-.|+.++|.+..++|.+.
T Consensus 306 Wd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 306 WDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 34455666666666666666666666655
No 217
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.86 E-value=0.4 Score=44.64 Aligned_cols=201 Identities=15% Similarity=0.075 Sum_probs=98.5
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHH-----HHHHHHHhcCChhHHHHHHH
Q 015726 132 QTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYN-----KVIKSFCESGDSSSVYSILA 206 (401)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~a~~~~~ 206 (401)
.-++++.+.|-.|+... +...++-.|.+.+|-++|.+--.+ ..-...|+ -..+-+...|+.++-..+.+
T Consensus 621 ~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~e---nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~R 694 (1081)
T KOG1538|consen 621 SELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHE---NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIR 694 (1081)
T ss_pred HHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCch---hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHH
Confidence 34566777776666643 344555667777777777655211 00001111 12233334444433333332
Q ss_pred HHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHH------HHHHHcCCCC---CchhHHHHHHHHHhcCCHHHHHHHHHH
Q 015726 207 EMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVL------QMMEKCGIAS---GVNVYNIRIQSLCKLKRSEEAKALLDG 277 (401)
Q Consensus 207 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~------~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~ 277 (401)
+-.+ ...+..-=......+...|+.++|..+. +.+.+.+-+. +..+...+...+-+...+..|-++|..
T Consensus 695 KRA~--WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k 772 (1081)
T KOG1538|consen 695 KRAD--WARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLK 772 (1081)
T ss_pred HHHH--HhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHH
Confidence 2111 0001111112334455678888877653 2222222222 233444444445555667777777777
Q ss_pred HHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHh-----------hHHHHHHHHHccCCHHHHHHHHH
Q 015726 278 MLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSY-----------CFFMFTYFLCQGGEYETALKVCR 346 (401)
Q Consensus 278 ~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-----------~~~~li~~~~~~g~~~~a~~~~~ 346 (401)
|-+. ..+++.....+++++|..+-+...+. .||.. -|...-.+|.+.|+-.+|.++++
T Consensus 773 ~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLe 841 (1081)
T KOG1538|consen 773 MGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLE 841 (1081)
T ss_pred hccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHH
Confidence 6542 34566777888888888877765543 33321 12222345555566666666665
Q ss_pred HHHHC
Q 015726 347 ASMAK 351 (401)
Q Consensus 347 ~~~~~ 351 (401)
++...
T Consensus 842 QLtnn 846 (1081)
T KOG1538|consen 842 QLTNN 846 (1081)
T ss_pred Hhhhh
Confidence 55443
No 218
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.78 E-value=0.034 Score=48.46 Aligned_cols=134 Identities=14% Similarity=0.046 Sum_probs=92.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCc-CHHHHHHHHHHHhcCCChHHHHHHHHHHHh----CC-CCCCH
Q 015726 253 NVYNIRIQSLCKLKRSEEAKALLDGML----SRGIKP-NLDTYKHLIHGFGKEGNLEGAKKLFASMTN----GG-CEPDS 322 (401)
Q Consensus 253 ~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~-~~~~~ 322 (401)
..|..+-..|.-.|+++.|+..-+.-. +-|-+. ....+..+..++.-.|+++.|.+.|+.... .| -....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 346666666777789999877654322 223221 235677788888889999999999886542 22 12334
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 015726 323 YCFFMFTYFLCQGGEYETALKVCRASMAK-----GWVPHFSTMKSLVTGLASISKVAEANELIGLMKKR 386 (401)
Q Consensus 323 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 386 (401)
.+.-+|.+.|.-..++++|+.++.+=... ...-....+.+|..+|...|..++|+.+.+.-.+.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 55667788888888899999988753221 12235678899999999999999999888776554
No 219
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.76 E-value=0.0068 Score=40.34 Aligned_cols=61 Identities=8% Similarity=0.056 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHhhh----CCCCCC-chhHHHHHHHHHHhcCChHHHHHHHHHH
Q 015726 77 AFSIAVSKLSQANHFNAISQLLEELKT----RPDLRQ-NERFHVHSIVLYGQANMIDHAMQTFEEM 137 (401)
Q Consensus 77 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~ 137 (401)
+|+.+...+...|++++|++.|++... .+...+ ...++..+..+|...|++++|++.+++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455555555555555555555555441 111111 1333444444555555555555555443
No 220
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.72 E-value=0.077 Score=48.31 Aligned_cols=160 Identities=16% Similarity=0.168 Sum_probs=95.9
Q ss_pred HHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 015726 82 VSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKN 161 (401)
Q Consensus 82 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 161 (401)
.+...-.++++++.++.+.-.-.|.+| ....+.++..+-+.|..+.|+++...- .+ -.....+.|+
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~---------~~---rFeLAl~lg~ 333 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDP---------DH---RFELALQLGN 333 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-H---------HH---HHHHHHHCT-
T ss_pred HHHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCCh---------HH---HhHHHHhcCC
Confidence 344556777888777665222223333 345677777777888888887764432 11 2344566788
Q ss_pred HHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHH
Q 015726 162 YEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQ 241 (401)
Q Consensus 162 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 241 (401)
++.|.++.++.. +...|..|.....+.|+++-|.+.|.+.. -|..++-.|.-.|+.+...++.+
T Consensus 334 L~~A~~~a~~~~-------~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~ 397 (443)
T PF04053_consen 334 LDIALEIAKELD-------DPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAK 397 (443)
T ss_dssp HHHHHHHCCCCS-------THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHhcC-------cHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHH
Confidence 888877765552 55678888888888888888888887743 24556666777777777777777
Q ss_pred HHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHH
Q 015726 242 MMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDG 277 (401)
Q Consensus 242 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 277 (401)
.....|- +|....++...|+.++..+++.+
T Consensus 398 ~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 398 IAEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 6666541 55566666667787777777653
No 221
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.71 E-value=0.0049 Score=41.04 Aligned_cols=62 Identities=18% Similarity=0.178 Sum_probs=33.3
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHC----CC-CCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 015726 324 CFFMFTYFLCQGGEYETALKVCRASMAK----GW-VPH-FSTMKSLVTGLASISKVAEANELIGLMKK 385 (401)
Q Consensus 324 ~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~-~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 385 (401)
+|+.+...|...|++++|+..+++..+. |- .|+ ..++..+...|...|++++|++++++..+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4555555566666666666666554433 10 111 34455566666666666666666666544
No 222
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.67 E-value=0.2 Score=46.34 Aligned_cols=178 Identities=20% Similarity=0.170 Sum_probs=118.5
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcC-CCCC-----chhHHHHHHHHHh----cCCHHHH
Q 015726 202 YSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCG-IASG-----VNVYNIRIQSLCK----LKRSEEA 271 (401)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~-----~~~~~~ll~~~~~----~~~~~~a 271 (401)
.-+|+-+.+. +|| .+..++....-.||-+.+++.+.+..+.+ +... .-.|+.++..++. ..+.+.|
T Consensus 177 ~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a 252 (468)
T PF10300_consen 177 FGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEA 252 (468)
T ss_pred HHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHH
Confidence 4444444443 333 34556777778899999999998876543 2111 1234444444443 4578889
Q ss_pred HHHHHHHHHCCCCcCHHHHHHH-HHHHhcCCChHHHHHHHHHHHhCC---CCCCHhhHHHHHHHHHccCCHHHHHHHHHH
Q 015726 272 KALLDGMLSRGIKPNLDTYKHL-IHGFGKEGNLEGAKKLFASMTNGG---CEPDSYCFFMFTYFLCQGGEYETALKVCRA 347 (401)
Q Consensus 272 ~~~~~~~~~~~~~p~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 347 (401)
.++++.+.+. -|+...|... .+.+...|++++|.+.|+...... .+.....+--+...+.-.+++++|.+.|.+
T Consensus 253 ~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~ 330 (468)
T PF10300_consen 253 EELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLR 330 (468)
T ss_pred HHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHH
Confidence 9999999987 6776666543 455677899999999999766421 122344566667778889999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHH-HccCCH-------HHHHHHHHHHHhc
Q 015726 348 SMAKGWVPHFSTMKSLVTGL-ASISKV-------AEANELIGLMKKR 386 (401)
Q Consensus 348 ~~~~~~~~~~~~~~~l~~~~-~~~g~~-------~~a~~~~~~~~~~ 386 (401)
+.+.. ..+..+|..+..+| ...|+. ++|.+++.++...
T Consensus 331 L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 331 LLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 99874 33455555444443 456777 8888888877654
No 223
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.63 E-value=0.65 Score=44.03 Aligned_cols=315 Identities=13% Similarity=0.071 Sum_probs=175.3
Q ss_pred HHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCC---chHHHHHHHHhhhCCCCCCchhHHHHHH
Q 015726 42 KRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANH---FNAISQLLEELKTRPDLRQNERFHVHSI 118 (401)
Q Consensus 42 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~li 118 (401)
...++..+...+.+..|+++..++...- .. ....|.....-+.+..+ -+.+..+-+++. .+ ..+ .-.|..+.
T Consensus 440 ~~~vi~Rl~~r~~Y~vaIQva~~l~~p~-~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls-~~-~~~-~iSy~~iA 514 (829)
T KOG2280|consen 440 EEVVIDRLVDRHLYSVAIQVAKLLNLPE-SQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLS-AK-LTP-GISYAAIA 514 (829)
T ss_pred hhhhhHHHHhcchhHHHHHHHHHhCCcc-cc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhc-cc-CCC-ceeHHHHH
Confidence 3445677777778888888888875331 11 13455555555555532 222333444443 32 223 34566667
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcC----------CCCCHHh
Q 015726 119 VLYGQANMIDHAMQTFEEMDKYGLR----QSVDALNALLLGCILSKNYEEVKRIFTEFPKVYG----------IEPNSET 184 (401)
Q Consensus 119 ~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------~~~~~~~ 184 (401)
.....+|+++.|..+++.=...+.. .+..-+...+.-+...|+.+....++-.+..+.. .+.....
T Consensus 515 ~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~l 594 (829)
T KOG2280|consen 515 RRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSL 594 (829)
T ss_pred HHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHH
Confidence 6667889999999888764443311 1222344556667778888887777776643210 0111111
Q ss_pred HHHHHH--------HHHhcCChhHHHHHHH--HHHhCC-CCCCHHhHHHHHHHHHccCChHHH----------HHHHHHH
Q 015726 185 YNKVIK--------SFCESGDSSSVYSILA--EMRRKS-IRPNATDFGLLLAGFYKEHKYEDV----------GKVLQMM 243 (401)
Q Consensus 185 ~~~l~~--------~~~~~~~~~~a~~~~~--~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a----------~~~~~~~ 243 (401)
|.-+++ .+.+.++-..+...|. ...... +.+-........+.+.+.....-. .++.+.+
T Consensus 595 Y~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~L 674 (829)
T KOG2280|consen 595 YRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTL 674 (829)
T ss_pred HHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 221111 0111111111111111 100000 111112223334444444432211 1222222
Q ss_pred HH-cCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCH
Q 015726 244 EK-CGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDS 322 (401)
Q Consensus 244 ~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 322 (401)
.. .|.....-+.+--+.-+...|+..+|.++-.+.+ -||...|-.=+.+++..+++++-+++-+.+. .+
T Consensus 675 e~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sP 744 (829)
T KOG2280|consen 675 EDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SP 744 (829)
T ss_pred HHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CC
Confidence 22 2322333445555666677799999988877664 5688888888999999999988877765543 24
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 015726 323 YCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELI 380 (401)
Q Consensus 323 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 380 (401)
.-|.-+..+|.+.|+.++|.+++-+.- +.. -.+.+|.+.|++.+|.++-
T Consensus 745 IGy~PFVe~c~~~~n~~EA~KYiprv~-----~l~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 745 IGYLPFVEACLKQGNKDEAKKYIPRVG-----GLQ----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred CCchhHHHHHHhcccHHHHhhhhhccC-----ChH----HHHHHHHHhccHHHHHHHH
Confidence 568888999999999999999987532 111 5678888889988887654
No 224
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.61 E-value=0.23 Score=47.44 Aligned_cols=179 Identities=17% Similarity=0.176 Sum_probs=117.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHH
Q 015726 114 HVHSIVLYGQANMIDHAMQTFEEMDKYGLRQS--VDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKS 191 (401)
Q Consensus 114 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 191 (401)
...-+....+...++.|+.+-+.-- ..++ ........+-+.+.|++++|...|-+-... +.|. .++.-
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~---~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~--le~s-----~Vi~k 406 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQH---LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF--LEPS-----EVIKK 406 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc--CChH-----HHHHH
Confidence 4555677777888888887765532 1222 222333445566789999998888766531 2332 35666
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHH
Q 015726 192 FCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEA 271 (401)
Q Consensus 192 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 271 (401)
|.....+..-..+++.+.+.|+. +...-..|+.+|.+.++.++..++.+... .|.. ..-....+..+.+.+-.++|
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEA 482 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHH
Confidence 67777788888889999888855 67777889999999999988877776554 2221 11245667777777777777
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 015726 272 KALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMT 314 (401)
Q Consensus 272 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 314 (401)
..+-..... +......++. ..+++++|++++..+.
T Consensus 483 ~~LA~k~~~-----he~vl~ille---~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 483 ELLATKFKK-----HEWVLDILLE---DLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHhcc-----CHHHHHHHHH---HhcCHHHHHHHHhcCC
Confidence 776554432 3444444444 5688899988887653
No 225
>PRK15331 chaperone protein SicA; Provisional
Probab=96.59 E-value=0.12 Score=39.48 Aligned_cols=89 Identities=13% Similarity=-0.011 Sum_probs=69.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHH
Q 015726 261 SLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYET 340 (401)
Q Consensus 261 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 340 (401)
-+...|++++|..+|.-+.-.+.. +..-|..|..+|...+++++|...|......+ .-|+..+-....++...|+.+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHH
Confidence 345679999999999988776533 56667777888888899999999998776554 3455556677888899999999
Q ss_pred HHHHHHHHHHC
Q 015726 341 ALKVCRASMAK 351 (401)
Q Consensus 341 a~~~~~~~~~~ 351 (401)
|...|....+.
T Consensus 124 A~~~f~~a~~~ 134 (165)
T PRK15331 124 ARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHhC
Confidence 99999887763
No 226
>PRK15331 chaperone protein SicA; Provisional
Probab=96.58 E-value=0.22 Score=38.00 Aligned_cols=117 Identities=7% Similarity=-0.053 Sum_probs=77.2
Q ss_pred ChhHHHHHHHHHHhCCCCC------CHHh---HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCC
Q 015726 197 DSSSVYSILAEMRRKSIRP------NATD---FGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKR 267 (401)
Q Consensus 197 ~~~~a~~~~~~~~~~~~~~------~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 267 (401)
+.++..+.+.+....|..+ +..+ .-...--+...|++++|..+|+-+.-.+. -+..-+..|..++-..++
T Consensus 8 ~~~~~~~~i~~al~~G~tlk~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~ 86 (165)
T PRK15331 8 SEERVAEMIWDAVSEGATLKDVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQ 86 (165)
T ss_pred hHHHHHHHHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHH
Confidence 4455555555555555322 1222 12223345677888888888888877653 345556667777777888
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 015726 268 SEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTN 315 (401)
Q Consensus 268 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 315 (401)
+++|...|......+. -|...+-....+|...|+.+.|...|....+
T Consensus 87 y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 87 FQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 8888888887766543 2555566677888888888888888888776
No 227
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.58 E-value=0.17 Score=36.83 Aligned_cols=140 Identities=16% Similarity=0.168 Sum_probs=71.4
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHH
Q 015726 122 GQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSV 201 (401)
Q Consensus 122 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 201 (401)
.-.|..++..++..+.... .+..-+|.+|--....-+-+-..++++.+-+- .|... .|++...
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki----FDis~----------C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI----FDISK----------CGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG----S-GGG-----------S-THHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh----cCchh----------hcchHHH
Confidence 3456677777777776652 34555666665555555666666666665332 22222 2333333
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 015726 202 YSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSR 281 (401)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 281 (401)
...+-.+ ..+...+...++.....|+-+...+++..+.+.+ .++....-.+..+|.+.|+..++.+++.+.-+.
T Consensus 76 i~C~~~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 76 IECYAKR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3333221 1133445555666667777777777777665432 455566666777777777777777777777766
Q ss_pred CCC
Q 015726 282 GIK 284 (401)
Q Consensus 282 ~~~ 284 (401)
|++
T Consensus 150 G~k 152 (161)
T PF09205_consen 150 GLK 152 (161)
T ss_dssp T-H
T ss_pred chH
Confidence 643
No 228
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.52 E-value=0.085 Score=39.19 Aligned_cols=114 Identities=14% Similarity=0.045 Sum_probs=63.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC--CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCH
Q 015726 261 SLCKLKRSEEAKALLDGMLSRGI--KPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEY 338 (401)
Q Consensus 261 ~~~~~~~~~~a~~~~~~~~~~~~--~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 338 (401)
...+.|++++|.+.|+.+...-. .-....--.++.+|.+.+++++|...+++.++....-...-|...+.+++.-...
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~ 98 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQD 98 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHh
Confidence 34456778888777777776511 1123455566777777778888777777777653221223455555554433322
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcc
Q 015726 339 ETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSGD 392 (401)
Q Consensus 339 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 392 (401)
+.. +..+. +..-| .+....|..-|+++++.+|.+..
T Consensus 99 ~~~---~~~~~--~~drD-------------~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 99 EGS---LQSFF--RSDRD-------------PTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred hhH---Hhhhc--ccccC-------------cHHHHHHHHHHHHHHHHCcCChh
Confidence 211 11111 11111 22245788888888888887653
No 229
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.47 E-value=0.15 Score=46.48 Aligned_cols=157 Identities=10% Similarity=0.002 Sum_probs=101.7
Q ss_pred HHHHhcCChHHHHHHHH--HHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcC
Q 015726 119 VLYGQANMIDHAMQTFE--EMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESG 196 (401)
Q Consensus 119 ~~~~~~~~~~~a~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 196 (401)
....-.++++.+.++.. ++.. .+ .....+.++..+-+.|..+.|+++.++-.. -.....+.|
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~-------------rFeLAl~lg 332 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTDPDH-------------RFELALQLG 332 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-------------HHHHHHHCT
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCChHH-------------HhHHHHhcC
Confidence 34456688888777775 2221 11 245577788888888989888887655422 234456788
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHH
Q 015726 197 DSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLD 276 (401)
Q Consensus 197 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 276 (401)
+++.|.++.++ ..+...|..|.....+.|+++-|++.|++..+ +..++-.|.-.|+.+...++.+
T Consensus 333 ~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~ 397 (443)
T PF04053_consen 333 NLDIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAK 397 (443)
T ss_dssp -HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHH
T ss_pred CHHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHH
Confidence 88888887654 23677899999999999999999888877543 6677888888898888888888
Q ss_pred HHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHH
Q 015726 277 GMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFAS 312 (401)
Q Consensus 277 ~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 312 (401)
.....|- ++....++.-.|+.+++.+++.+
T Consensus 398 ~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 398 IAEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 7777652 45555556667888888777654
No 230
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.44 E-value=0.62 Score=41.52 Aligned_cols=145 Identities=14% Similarity=0.160 Sum_probs=106.5
Q ss_pred HHhHHHHHHHHHccCChHHHHHHHHHHHHcC-CCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHH-HHHH
Q 015726 217 ATDFGLLLAGFYKEHKYEDVGKVLQMMEKCG-IASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTY-KHLI 294 (401)
Q Consensus 217 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~-~~li 294 (401)
..+|...++...+....+.|..+|-++.+.+ ..+++.++++++..++. |+..-|.++|+--... .||...| +..+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 3457778888888888999999999998888 56788889999987765 7888899999876654 3455444 4556
Q ss_pred HHHhcCCChHHHHHHHHHHHhCCCCCC--HhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 015726 295 HGFGKEGNLEGAKKLFASMTNGGCEPD--SYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGL 367 (401)
Q Consensus 295 ~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 367 (401)
..+...++-+.|..+|+..+.. +..+ ...|..+|..-...|+...+..+-++|... .|...+......-|
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry 545 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRY 545 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHH
Confidence 6667888999999999865543 1222 458889998888889998888888877764 44444444444444
No 231
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.43 E-value=0.26 Score=37.11 Aligned_cols=124 Identities=18% Similarity=0.126 Sum_probs=55.3
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCC
Q 015726 222 LLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEG 301 (401)
Q Consensus 222 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~ 301 (401)
.++..+...+.......+++.+...+ ..+...++.++..|++.+ ..+....++. . .+......+++.|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN---K---SNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh---c---cccCCHHHHHHHHHHcC
Confidence 34444444455555555555555544 234445555555555432 2222222221 1 12222333455555555
Q ss_pred ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 015726 302 NLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQG-GEYETALKVCRASMAKGWVPHFSTMKSLVTGLA 368 (401)
Q Consensus 302 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 368 (401)
.++++..++.++-. +...+..+... ++++.|.+++.+ ..+...|..++..+.
T Consensus 84 l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~~~~l 136 (140)
T smart00299 84 LYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK------QNNPELWAEVLKALL 136 (140)
T ss_pred cHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh------CCCHHHHHHHHHHHH
Confidence 55555555544421 22223333323 555556555543 124445555555443
No 232
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.42 E-value=0.096 Score=38.93 Aligned_cols=84 Identities=13% Similarity=0.122 Sum_probs=56.7
Q ss_pred HhHHHHHHHHHHhCCCchHHHHHHHHhhh-CCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 015726 75 RMAFSIAVSKLSQANHFNAISQLLEELKT-RPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALL 153 (401)
Q Consensus 75 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 153 (401)
...|... ....+.|++++|++.|+.+.. -|..+-....-..++.+|.+.+++++|...+++.++.........|-..+
T Consensus 11 ~~ly~~a-~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 11 QELYQEA-QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHH-HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 3444444 445688999999999999883 34334445677778888999999999999999988865332233454455
Q ss_pred HHHHhc
Q 015726 154 LGCILS 159 (401)
Q Consensus 154 ~~~~~~ 159 (401)
.+++..
T Consensus 90 ~gL~~~ 95 (142)
T PF13512_consen 90 RGLSYY 95 (142)
T ss_pred HHHHHH
Confidence 554433
No 233
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.40 E-value=0.14 Score=42.36 Aligned_cols=100 Identities=14% Similarity=0.045 Sum_probs=70.6
Q ss_pred hHHHHHHHHHHhCCCchHHHHHHHHhh-hCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCC--CCCHHHHHHH
Q 015726 76 MAFSIAVSKLSQANHFNAISQLLEELK-TRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGL--RQSVDALNAL 152 (401)
Q Consensus 76 ~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l 152 (401)
..|+..+..+ +.|++..|.+-|.... .-|+..-....+-.|..++...|++++|..+|..+.+.-. +.-+..+.-|
T Consensus 143 ~~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 143 KLYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 3677766654 6677888888888877 3333333345666788888888888888888888766321 1124566667
Q ss_pred HHHHHhcCCHHHHHHHHHhchhhc
Q 015726 153 LLGCILSKNYEEVKRIFTEFPKVY 176 (401)
Q Consensus 153 ~~~~~~~~~~~~a~~~~~~~~~~~ 176 (401)
..+..+.|+.++|...|+++.+++
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHC
Confidence 777888888888888888888774
No 234
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.39 E-value=0.44 Score=39.22 Aligned_cols=179 Identities=12% Similarity=0.149 Sum_probs=83.1
Q ss_pred HhcCChhHHHHHHHHHHhCC--CCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhc-----
Q 015726 193 CESGDSSSVYSILAEMRRKS--IRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKL----- 265 (401)
Q Consensus 193 ~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----- 265 (401)
.+.|++++|.+.|+.+..+. -+-...+--.++-++.+.++++.|...+++....-......-|-..|.+++.-
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~ 124 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD 124 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence 45566777777776665542 12233444555566666677777776666665543222223344444444321
Q ss_pred --CCHH---HHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHH
Q 015726 266 --KRSE---EAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYET 340 (401)
Q Consensus 266 --~~~~---~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 340 (401)
.|.. .|..-|+++.++ -||. .=...|..-+..+... . ...=..+.+.|.+.|.+..
T Consensus 125 ~~rDq~~~~~A~~~f~~~i~r--yPnS-------------~Ya~dA~~~i~~~~d~---L-A~~Em~IaryY~kr~~~~A 185 (254)
T COG4105 125 VTRDQSAARAAFAAFKELVQR--YPNS-------------RYAPDAKARIVKLNDA---L-AGHEMAIARYYLKRGAYVA 185 (254)
T ss_pred cccCHHHHHHHHHHHHHHHHH--CCCC-------------cchhhHHHHHHHHHHH---H-HHHHHHHHHHHHHhcChHH
Confidence 1222 222233333332 1221 1111111111111100 0 0001233455667777777
Q ss_pred HHHHHHHHHHC--CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC
Q 015726 341 ALKVCRASMAK--GWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKS 390 (401)
Q Consensus 341 a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 390 (401)
|..-+++|.+. .-.-....+-.+..+|...|-.++|.+.-+-+..+.|.+
T Consensus 186 A~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 186 AINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 77777776665 111123345556666777777777766665555554443
No 235
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.38 E-value=0.44 Score=39.22 Aligned_cols=82 Identities=12% Similarity=0.126 Sum_probs=54.3
Q ss_pred HhHHHHHHHHHHhCCCchHHHHHHHHhh-hCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 015726 75 RMAFSIAVSKLSQANHFNAISQLLEELK-TRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALL 153 (401)
Q Consensus 75 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 153 (401)
...|+..+.. .+.|++++|...|+.+. ..|..+-...+...++.++.+.++++.|+..+++..+.-.......|-..|
T Consensus 35 ~~LY~~g~~~-L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 35 SELYNEGLTE-LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 3455554444 57888999999998888 445555556666777777888888999888888877643232333454455
Q ss_pred HHHH
Q 015726 154 LGCI 157 (401)
Q Consensus 154 ~~~~ 157 (401)
.+++
T Consensus 114 kgLs 117 (254)
T COG4105 114 KGLS 117 (254)
T ss_pred HHHH
Confidence 5544
No 236
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.35 E-value=0.34 Score=44.88 Aligned_cols=23 Identities=17% Similarity=-0.006 Sum_probs=10.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC
Q 015726 259 IQSLCKLKRSEEAKALLDGMLSR 281 (401)
Q Consensus 259 l~~~~~~~~~~~a~~~~~~~~~~ 281 (401)
...+.-..++++|.+.|..+.+.
T Consensus 312 ~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 312 AWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred HHHHHHHchHHHHHHHHHHHHhc
Confidence 33344444555555555554443
No 237
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.32 E-value=0.59 Score=40.01 Aligned_cols=163 Identities=14% Similarity=0.104 Sum_probs=78.5
Q ss_pred hHHHHHHHHHccCChH---HHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 015726 219 DFGLLLAGFYKEHKYE---DVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIH 295 (401)
Q Consensus 219 ~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 295 (401)
++..++.+|...+..+ +|.++++.+.... +....++-.-+..+.+.++.+.+.+++.+|...- ......+...+.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHH
Confidence 4455666666665544 3444445553332 2234445555666666677777777777777652 112233444333
Q ss_pred HH---hcCCChHHHHHHHHHHHhCCCCCCHh-hHHHH-H---HHHHccC------CHHHHHHHHHHHHHC-CCCCCHHHH
Q 015726 296 GF---GKEGNLEGAKKLFASMTNGGCEPDSY-CFFMF-T---YFLCQGG------EYETALKVCRASMAK-GWVPHFSTM 360 (401)
Q Consensus 296 ~~---~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~l-i---~~~~~~g------~~~~a~~~~~~~~~~-~~~~~~~~~ 360 (401)
.+ .. .....+...+..+....+.|... ....+ + -...+.+ .++....+++...+. +.+.+..+-
T Consensus 164 ~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~ 242 (278)
T PF08631_consen 164 HIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAA 242 (278)
T ss_pred HHHHHHh-hCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 33 22 23345555555555444444432 11111 1 1111211 134444444432222 223333332
Q ss_pred HHH-------HHHHHccCCHHHHHHHHHHHH
Q 015726 361 KSL-------VTGLASISKVAEANELIGLMK 384 (401)
Q Consensus 361 ~~l-------~~~~~~~g~~~~a~~~~~~~~ 384 (401)
.++ ...+.+.+++++|.+.|+-..
T Consensus 243 ~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 243 SAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 222 233567899999999888554
No 238
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.26 E-value=0.79 Score=40.92 Aligned_cols=142 Identities=13% Similarity=0.055 Sum_probs=86.3
Q ss_pred HHhcCCChhHHHHHhhhccCCCC---CCcc-HhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHH--H
Q 015726 48 RLKSESNPFRILDICCGASLAPE---SPLD-RMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVL--Y 121 (401)
Q Consensus 48 ~~~~~~~~~~A~~~~~~~~~~~~---~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~--~ 121 (401)
.+..+++..+|..+|-....... .... ...-+.++++|- .++.+.....+..+....+.. .|..+..+ +
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~~~~s----~~l~LF~~L~~ 89 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQFGKS----AYLPLFKALVA 89 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhcCCc----hHHHHHHHHHH
Confidence 45677788888888776643322 2222 223445566664 455666666666655333322 34444433 4
Q ss_pred HhcCChHHHHHHHHHHhhC--CCCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHhchhhc---CCCCCHHh
Q 015726 122 GQANMIDHAMQTFEEMDKY--GLRQ------------SVDALNALLLGCILSKNYEEVKRIFTEFPKVY---GIEPNSET 184 (401)
Q Consensus 122 ~~~~~~~~a~~~~~~~~~~--~~~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~ 184 (401)
.+.+.+++|.+.+..-.+. +-.+ |...=+..+.+++..|.+.++..+++++.... ...-+..+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 5889999999988877654 2221 22223556778899999999999999997642 11246778
Q ss_pred HHHHHHHHHh
Q 015726 185 YNKVIKSFCE 194 (401)
Q Consensus 185 ~~~l~~~~~~ 194 (401)
|+.++-.+.+
T Consensus 170 yd~~vlmlsr 179 (549)
T PF07079_consen 170 YDRAVLMLSR 179 (549)
T ss_pred HHHHHHHHhH
Confidence 8875555443
No 239
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.25 E-value=0.043 Score=45.32 Aligned_cols=61 Identities=16% Similarity=0.263 Sum_probs=39.0
Q ss_pred HHHHHhchhhcCCCCCHHhHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc
Q 015726 166 KRIFTEFPKVYGIEPNSETYNKVIKSFCE-----SGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYK 229 (401)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 229 (401)
++.|.... +-+.|..+|-..+..+.. .+.++-....+..|.+.|+..|..+|+.|++.+-+
T Consensus 54 e~~F~aa~---~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPK 119 (406)
T KOG3941|consen 54 EKQFEAAE---PEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPK 119 (406)
T ss_pred hhhhhccC---cccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcc
Confidence 34454443 224566666666666543 34566666777777778888888888888876644
No 240
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.19 E-value=0.22 Score=44.59 Aligned_cols=67 Identities=7% Similarity=-0.080 Sum_probs=56.0
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHhchhh
Q 015726 107 LRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQS-V---DALNALLLGCILSKNYEEVKRIFTEFPKV 175 (401)
Q Consensus 107 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 175 (401)
.|.+...+..+..+|...|++++|+..|++.++.+ |+ . .+|..+..+|...|+.++|++.+++..+.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35557788899999999999999999999988874 44 3 35888999999999999999999998753
No 241
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.19 E-value=0.54 Score=38.29 Aligned_cols=213 Identities=12% Similarity=0.109 Sum_probs=110.8
Q ss_pred CCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHH
Q 015726 69 PESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDA 148 (401)
Q Consensus 69 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 148 (401)
++...-...|.....+|....++++|...+.+....-. .+...|. ....++.|.-+.+++.+. +--...
T Consensus 25 ad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yE--nnrslfh-------AAKayEqaamLake~~kl--sEvvdl 93 (308)
T KOG1585|consen 25 ADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYE--NNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDL 93 (308)
T ss_pred CCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH--hcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHH
Confidence 34444556788888888888999998887777652110 0011111 123345555555555543 112334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC---C--CCCCHHhHHHH
Q 015726 149 LNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRK---S--IRPNATDFGLL 223 (401)
Q Consensus 149 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~--~~~~~~~~~~l 223 (401)
|+.....|...|..+.|-..+++.-+- ...-+++.|+++|++.... + ..--...+...
T Consensus 94 ~eKAs~lY~E~GspdtAAmaleKAak~-----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~ 156 (308)
T KOG1585|consen 94 YEKASELYVECGSPDTAAMALEKAAKA-----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKC 156 (308)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHHHHH-----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 555666777777777666666555321 1223444455554443221 0 00011223334
Q ss_pred HHHHHccCChHHHHHHHHHHHH----cCCCCC-chhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCcCHHHHHHHHH
Q 015726 224 LAGFYKEHKYEDVGKVLQMMEK----CGIASG-VNVYNIRIQSLCKLKRSEEAKALLDGMLSRG---IKPNLDTYKHLIH 295 (401)
Q Consensus 224 l~~~~~~~~~~~a~~~~~~~~~----~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~p~~~~~~~li~ 295 (401)
-+.+.+..++++|-..+.+-.. ..--++ -..|-..|-.+.-..++..|.+.++.-.+.+ -.-+..+...|+.
T Consensus 157 sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ 236 (308)
T KOG1585|consen 157 SRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLT 236 (308)
T ss_pred hhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHH
Confidence 4556666666666554433211 100111 1234444555666678888888887644332 1224567777777
Q ss_pred HHhcCCChHHHHHHH
Q 015726 296 GFGKEGNLEGAKKLF 310 (401)
Q Consensus 296 ~~~~~~~~~~a~~~~ 310 (401)
+| ..|+.+++.+++
T Consensus 237 ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 237 AY-DEGDIEEIKKVL 250 (308)
T ss_pred Hh-ccCCHHHHHHHH
Confidence 77 567777766554
No 242
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.04 E-value=0.078 Score=43.88 Aligned_cols=100 Identities=17% Similarity=0.270 Sum_probs=71.9
Q ss_pred CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcC----------------ChhHH
Q 015726 143 RQSVDALNALLLGCIL-----SKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESG----------------DSSSV 201 (401)
Q Consensus 143 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------~~~~a 201 (401)
+.|..+|...+..+.. .+.++-.-..++.| +++|+..|..+|+.|++.+=+.. +-+-+
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m-~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~ 142 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYM-KEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCA 142 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH-HHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHH
Confidence 4577778877777754 35677777888888 78899999999999999865432 12346
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHccCCh-HHHHHHHHHH
Q 015726 202 YSILAEMRRKSIRPNATDFGLLLAGFYKEHKY-EDVGKVLQMM 243 (401)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~ 243 (401)
++++++|...|+.||..+-..+++++.+.+-. .+..+++-.|
T Consensus 143 I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 143 IKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 77888888888888888888888887776643 3344444444
No 243
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.02 E-value=1.5 Score=41.81 Aligned_cols=302 Identities=13% Similarity=0.122 Sum_probs=174.2
Q ss_pred CCCccHhHHH-----HHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCC--hHHHHHHHHHHhhCCC
Q 015726 70 ESPLDRMAFS-----IAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANM--IDHAMQTFEEMDKYGL 142 (401)
Q Consensus 70 ~~~~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~ 142 (401)
+++.+-..|. .+|+-+...+.+..|+++-+.+. .+.... ..++......+.+..+ -+++++..++=.....
T Consensus 427 gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~-~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~ 504 (829)
T KOG2280|consen 427 GIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLN-LPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL 504 (829)
T ss_pred CccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhC-Cccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence 4555554443 45677788899999999998876 333233 5678888888877643 2344444444333322
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCC---CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC-------
Q 015726 143 RQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIE---PNSETYNKVIKSFCESGDSSSVYSILAEMRRKS------- 212 (401)
Q Consensus 143 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------- 212 (401)
.....|..+..-....|+.+.|..+++.=+....-. .+..-+...+.-+.+.|+.+-...++-.+...-
T Consensus 505 -~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~ 583 (829)
T KOG2280|consen 505 -TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFM 583 (829)
T ss_pred -CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHH
Confidence 344567777777778999999998876432221000 122235566667778888888777776665431
Q ss_pred ----CCCCHHhHHHHHH--------HHHccCChHHHHHHH--HHHHH-cCCCCCchhHHHHHHHHHhcCCHH--------
Q 015726 213 ----IRPNATDFGLLLA--------GFYKEHKYEDVGKVL--QMMEK-CGIASGVNVYNIRIQSLCKLKRSE-------- 269 (401)
Q Consensus 213 ----~~~~~~~~~~ll~--------~~~~~~~~~~a~~~~--~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~-------- 269 (401)
.+.....|..+++ .+...++-.++...| +.... ..+.+-..........+.+.....
T Consensus 584 ~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed 663 (829)
T KOG2280|consen 584 TLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALED 663 (829)
T ss_pred HHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHH
Confidence 1111222222222 111112211221111 11000 001111112233334444433311
Q ss_pred --HHHHHHHHHHHC-CCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHH
Q 015726 270 --EAKALLDGMLSR-GIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCR 346 (401)
Q Consensus 270 --~a~~~~~~~~~~-~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 346 (401)
+-+++.+.+... |......+.+--+.-+...|+-.+|.++-.+.+ -||-..|-.-+.+++..+++++-+++-+
T Consensus 664 ~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAk 739 (829)
T KOG2280|consen 664 QMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAK 739 (829)
T ss_pred HHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHh
Confidence 222233333322 222333444555666677899999999888776 6889999999999999999999888766
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 015726 347 ASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMK 384 (401)
Q Consensus 347 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 384 (401)
.+. .+.-|.-.+.+|.+.|+.++|.+++.+..
T Consensus 740 skk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 740 SKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred ccC------CCCCchhHHHHHHhcccHHHHhhhhhccC
Confidence 443 24456667899999999999999987653
No 244
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.97 E-value=1.1 Score=40.02 Aligned_cols=283 Identities=13% Similarity=0.103 Sum_probs=122.4
Q ss_pred HHhCCCchHHHHHHHHhhhCCCCCC---c-hhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH--HHHh
Q 015726 85 LSQANHFNAISQLLEELKTRPDLRQ---N-ERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLL--GCIL 158 (401)
Q Consensus 85 ~~~~~~~~~a~~~~~~~~~~~~~~~---~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~ 158 (401)
+.+.+++.++.++|.++.......+ . +-..+.++++|.. ++.+.....+....+.. | ...|-.+.. .+.+
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF--G-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc--C-CchHHHHHHHHHHHH
Confidence 3456777777777777663222111 1 1122344455543 34555544444444321 2 122333322 2345
Q ss_pred cCCHHHHHHHHHhchhhc-CCCCC------------HHhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCCCHHhHH
Q 015726 159 SKNYEEVKRIFTEFPKVY-GIEPN------------SETYNKVIKSFCESGDSSSVYSILAEMRRK----SIRPNATDFG 221 (401)
Q Consensus 159 ~~~~~~a~~~~~~~~~~~-~~~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~ 221 (401)
.+++.+|.+.+.....+. +..+. ...=++.++++...|.+.++..+++++... ....+..+|+
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 666777766665553221 11111 111234455566667777776666665443 2335666666
Q ss_pred HHHHHHHccCChHHHHHHHHHHHH---cCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHh
Q 015726 222 LLLAGFYKEHKYEDVGKVLQMMEK---CGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFG 298 (401)
Q Consensus 222 ~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 298 (401)
.++-.+.+. .|-++.+ .++-|+ |--++-.|.+.= ..++.---..+.|.......++....
T Consensus 172 ~~vlmlsrS--------YfLEl~e~~s~dl~pd---yYemilfY~kki------~~~d~~~Y~k~~peeeL~s~imqhlf 234 (549)
T PF07079_consen 172 RAVLMLSRS--------YFLELKESMSSDLYPD---YYEMILFYLKKI------HAFDQRPYEKFIPEEELFSTIMQHLF 234 (549)
T ss_pred HHHHHHhHH--------HHHHHHHhcccccChH---HHHHHHHHHHHH------HHHhhchHHhhCcHHHHHHHHHHHHH
Confidence 554444332 2222211 112221 222222222110 00000000012333333333333322
Q ss_pred cCC--ChHHHHHHHHHHHhCCCCCCHh-hHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHccC
Q 015726 299 KEG--NLEGAKKLFASMTNGGCEPDSY-CFFMFTYFLCQGGEYETALKVCRASMAKGWVP----HFSTMKSLVTGLASIS 371 (401)
Q Consensus 299 ~~~--~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g 371 (401)
-.. ...--.+++..-...-+.|+.. ....+...+.+ +.+++..+.+.+....+.+ -..+|..++....+.+
T Consensus 235 i~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~ 312 (549)
T PF07079_consen 235 IVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQV 312 (549)
T ss_pred hCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211 1112223333333333455432 23334444433 5555555555444332111 2346677777777788
Q ss_pred CHHHHHHHHHHHHhcCCCC
Q 015726 372 KVAEANELIGLMKKRFPKS 390 (401)
Q Consensus 372 ~~~~a~~~~~~~~~~~~~~ 390 (401)
+...|.+.+.-+.-..|..
T Consensus 313 ~T~~a~q~l~lL~~ldp~~ 331 (549)
T PF07079_consen 313 QTEEAKQYLALLKILDPRI 331 (549)
T ss_pred hHHHHHHHHHHHHhcCCcc
Confidence 8888887777665544443
No 245
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.96 E-value=0.52 Score=36.17 Aligned_cols=51 Identities=18% Similarity=0.195 Sum_probs=21.4
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhch
Q 015726 123 QANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFP 173 (401)
Q Consensus 123 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 173 (401)
..|.++.+....+-+...+-+.....-..|.-+-.+.|++.+|.+.|.++.
T Consensus 144 D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 144 DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 444444444444444333322222333334334444444444444444443
No 246
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.95 E-value=1.1 Score=39.60 Aligned_cols=251 Identities=10% Similarity=0.001 Sum_probs=145.7
Q ss_pred ChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhh-hCCCCCCchhHHHHHHHHHHhcCChHHHHH
Q 015726 54 NPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELK-TRPDLRQNERFHVHSIVLYGQANMIDHAMQ 132 (401)
Q Consensus 54 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 132 (401)
++..|+..+..+..- .+.+..-|..-+..+...|++++|.--.+.-. ..++++. .....-.++...++..+|..
T Consensus 64 ~Y~nal~~yt~Ai~~--~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k---~~~r~~~c~~a~~~~i~A~~ 138 (486)
T KOG0550|consen 64 TYGNALKNYTFAIDM--CPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSK---GQLREGQCHLALSDLIEAEE 138 (486)
T ss_pred hHHHHHHHHHHHHHh--CccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccc---cccchhhhhhhhHHHHHHHH
Confidence 556677766665433 33356667777777777777777766554443 1222211 23333344444444444443
Q ss_pred HHHH---------------HhhCC-CCCCHHHHHHH-HHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHH--HHH
Q 015726 133 TFEE---------------MDKYG-LRQSVDALNAL-LLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIK--SFC 193 (401)
Q Consensus 133 ~~~~---------------~~~~~-~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~--~~~ 193 (401)
.++. ..... -+|....|..+ ..++...|+.++|.+.--...+.. ..+. +...++ ++.
T Consensus 139 ~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld--~~n~--~al~vrg~~~y 214 (486)
T KOG0550|consen 139 KLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD--ATNA--EALYVRGLCLY 214 (486)
T ss_pred HhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc--cchh--HHHHhcccccc
Confidence 3331 11111 12333444444 345667788888888777765432 2222 233333 334
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHh-------------HHHHHHHHHccCChHHHHHHHHHHHHcC---CCCCchhHHH
Q 015726 194 ESGDSSSVYSILAEMRRKSIRPNATD-------------FGLLLAGFYKEHKYEDVGKVLQMMEKCG---IASGVNVYNI 257 (401)
Q Consensus 194 ~~~~~~~a~~~~~~~~~~~~~~~~~~-------------~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ 257 (401)
-.++.+.+...|++.+..+ |+... +..-.+-..+.|.+..|.+.+.+.+... ..++...|-.
T Consensus 215 y~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~n 292 (486)
T KOG0550|consen 215 YNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGN 292 (486)
T ss_pred cccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHH
Confidence 4577888888888876643 33222 1112234568899999999999887643 3445566767
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHhcCCChHHHHHHHHHHHhCC
Q 015726 258 RIQSLCKLKRSEEAKALLDGMLSRGIKPN-LDTYKHLIHGFGKEGNLEGAKKLFASMTNGG 317 (401)
Q Consensus 258 ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 317 (401)
...+..+.|+.++|+.--++..... +. ...|..-..++...+++++|.+-|+...+..
T Consensus 293 ra~v~~rLgrl~eaisdc~~Al~iD--~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 293 RALVNIRLGRLREAISDCNEALKID--SSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred hHhhhcccCCchhhhhhhhhhhhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 7777788899999998888776642 11 1223333445666788999999888877653
No 247
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.91 E-value=1.7 Score=41.61 Aligned_cols=154 Identities=10% Similarity=0.084 Sum_probs=88.2
Q ss_pred HHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 015726 82 VSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKN 161 (401)
Q Consensus 82 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 161 (401)
|+.+.+.+.+++|+++.+..........-.......|..+.-.|++++|-...-.|.. .+..-|.--+.-+...++
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccccc
Confidence 6777888888888888877552222111256677778888888888888888888873 355666666666666665
Q ss_pred HHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh---------CCCC-------CCHHhHHHHHH
Q 015726 162 YEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRR---------KSIR-------PNATDFGLLLA 225 (401)
Q Consensus 162 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------~~~~-------~~~~~~~~ll~ 225 (401)
......+ ++.. ....+...|..++..+.. .+...-.++..+... ...+ -+...-..|..
T Consensus 439 l~~Ia~~---lPt~-~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~ 513 (846)
T KOG2066|consen 439 LTDIAPY---LPTG-PPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAH 513 (846)
T ss_pred cchhhcc---CCCC-CcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHH
Confidence 5443333 3221 112344556666666665 222222222211000 0001 11223334777
Q ss_pred HHHccCChHHHHHHHHHHH
Q 015726 226 GFYKEHKYEDVGKVLQMME 244 (401)
Q Consensus 226 ~~~~~~~~~~a~~~~~~~~ 244 (401)
.|...+++.+|.+++-...
T Consensus 514 LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 514 LYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHccChHHHHHHHHhcc
Confidence 7788888888887765553
No 248
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.85 E-value=0.29 Score=35.57 Aligned_cols=54 Identities=7% Similarity=0.034 Sum_probs=23.9
Q ss_pred HHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 015726 84 KLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDK 139 (401)
Q Consensus 84 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 139 (401)
+++..|+++.|++.|.+.... .|.+.+.|+.-..++.-.|+.++|++-+++..+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 334444555555544444411 122233444444444444555555444444443
No 249
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.82 E-value=1.1 Score=38.81 Aligned_cols=166 Identities=11% Similarity=-0.000 Sum_probs=80.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCC---HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-----CCHHhH
Q 015726 149 LNALLLGCILSKNYEEVKRIFTEFPKVYGIEPN---SETYNKVIKSFCESGDSSSVYSILAEMRRKSIR-----PNATDF 220 (401)
Q Consensus 149 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~ 220 (401)
|..+.+++-+.-++.+++.+-+.-....|..|. -...-++..++...+.++++++.|+...+.... ....++
T Consensus 86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvc 165 (518)
T KOG1941|consen 86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVC 165 (518)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehh
Confidence 333444444444445555444333222222221 122334555555566677777777665442111 122356
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHH----cCCCCCchhHHH-----HHHHHHhcCCHHHHHHHHHHHHH----CCCCcC-
Q 015726 221 GLLLAGFYKEHKYEDVGKVLQMMEK----CGIASGVNVYNI-----RIQSLCKLKRSEEAKALLDGMLS----RGIKPN- 286 (401)
Q Consensus 221 ~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~----~~~~p~- 286 (401)
..+...|.+..|++++.-+..+..+ .++..-..-|.. +.-++-..|....|.+.-++..+ .|-.+.
T Consensus 166 v~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~ 245 (518)
T KOG1941|consen 166 VSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQ 245 (518)
T ss_pred hhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHH
Confidence 6666677777777776655544422 222211112222 22344455666666666555433 232211
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 015726 287 LDTYKHLIHGFGKEGNLEGAKKLFASMT 314 (401)
Q Consensus 287 ~~~~~~li~~~~~~~~~~~a~~~~~~m~ 314 (401)
......+...|...|+.+.|+.-|++..
T Consensus 246 arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 246 ARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2233455666777777777776666543
No 250
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.77 E-value=0.23 Score=43.45 Aligned_cols=125 Identities=9% Similarity=0.015 Sum_probs=66.2
Q ss_pred HHHHhcCCHHHHHHHHHhchhhcC----CC---------CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhH
Q 015726 154 LGCILSKNYEEVKRIFTEFPKVYG----IE---------PNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDF 220 (401)
Q Consensus 154 ~~~~~~~~~~~a~~~~~~~~~~~~----~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 220 (401)
+.|.+.|++..|..-|++...... .. .-..+++.+..+|.+.+++..|++..++.+..+ ++|....
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 456677777777777666533211 11 112345556666666666666666666666553 4455555
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHH-HHHHHHHHHHH
Q 015726 221 GLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSE-EAKALLDGMLS 280 (401)
Q Consensus 221 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~~ 280 (401)
---..++...|+++.|...|+++.+.. +.|..+-+.++.+--+..... ...++|..|..
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 555666666666666666666666642 223333333333333332222 23445555543
No 251
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.75 E-value=0.21 Score=44.69 Aligned_cols=71 Identities=6% Similarity=-0.123 Sum_probs=58.4
Q ss_pred CCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhC-CCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 015726 70 ESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTR-PDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKY 140 (401)
Q Consensus 70 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 140 (401)
..|.+...|+.+..+|.+.|++++|+..|++.... |+...-...|..+..+|...|++++|++.+++..+.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34557789999999999999999999999997743 332221145899999999999999999999999875
No 252
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.71 E-value=1.2 Score=38.26 Aligned_cols=116 Identities=7% Similarity=-0.071 Sum_probs=60.5
Q ss_pred cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhH----HHHHHHHHhcCChh
Q 015726 124 ANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETY----NKVIKSFCESGDSS 199 (401)
Q Consensus 124 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~ 199 (401)
.|++.+|-..++++++.- +.|...++..=.+|.-.|+.+.....++++...+ .+|...| ....-++...|-++
T Consensus 116 ~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w--n~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW--NADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred cccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhcccc--CCCCcHHHHHHHHHHhhHHHhccch
Confidence 455555555555555432 4455555555556666666666655555554432 2332222 22233334556666
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHH
Q 015726 200 SVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMM 243 (401)
Q Consensus 200 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 243 (401)
+|.+.-++..+.+ +.|....+.+...+--.|++.++.++..+-
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 6666665555442 334555555555555566666665555443
No 253
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.69 E-value=1.2 Score=38.17 Aligned_cols=164 Identities=13% Similarity=0.129 Sum_probs=87.8
Q ss_pred hHHHHHHHHHhcCChh---HHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHH
Q 015726 184 TYNKVIKSFCESGDSS---SVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQ 260 (401)
Q Consensus 184 ~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 260 (401)
+...++.+|...+..+ +|.++++.+.+. .+-....+..-+..+.+.++.+.+.+++..|...- .-....+..++.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHH
Confidence 4566777777766544 455566666443 22235556566677777888888888888887762 223344555555
Q ss_pred HHHh--cCCHHHHHHHHHHHHHCCCCcCHH-HHHH-HH---HHHhcCCC------hHHHHHHHHHHHhC-CCCCCHhhHH
Q 015726 261 SLCK--LKRSEEAKALLDGMLSRGIKPNLD-TYKH-LI---HGFGKEGN------LEGAKKLFASMTNG-GCEPDSYCFF 326 (401)
Q Consensus 261 ~~~~--~~~~~~a~~~~~~~~~~~~~p~~~-~~~~-li---~~~~~~~~------~~~a~~~~~~m~~~-~~~~~~~~~~ 326 (401)
.+-. ......+...++.+....+.|... .... ++ -...+.++ .+...++++...+. +.+.+..+-.
T Consensus 164 ~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~ 243 (278)
T PF08631_consen 164 HIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAAS 243 (278)
T ss_pred HHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 5422 233455666666665554554443 1111 11 11122211 44444555543332 2233443333
Q ss_pred HH-------HHHHHccCCHHHHHHHHHHHH
Q 015726 327 MF-------TYFLCQGGEYETALKVCRASM 349 (401)
Q Consensus 327 ~l-------i~~~~~~g~~~~a~~~~~~~~ 349 (401)
.+ ...+.+.++++.|.+.++-..
T Consensus 244 a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 244 AIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 32 234567889999999987543
No 254
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.68 E-value=0.3 Score=42.75 Aligned_cols=96 Identities=13% Similarity=0.080 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHH
Q 015726 288 DTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKS-LVTG 366 (401)
Q Consensus 288 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~ 366 (401)
.++..+..+|.+.+++..|++.....+..+ ++|....-.-..+|...|+++.|...|+++.+.. |+...... |+..
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~--P~Nka~~~el~~l 334 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE--PSNKAARAELIKL 334 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHH
Confidence 345556666777777777777777777664 4556666666677777777777777777777653 43333333 3333
Q ss_pred HHccCC-HHHHHHHHHHHHhc
Q 015726 367 LASISK-VAEANELIGLMKKR 386 (401)
Q Consensus 367 ~~~~g~-~~~a~~~~~~~~~~ 386 (401)
--+..+ .+...++|..|-.+
T Consensus 335 ~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 333333 23335666666655
No 255
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.66 E-value=2.8 Score=42.28 Aligned_cols=52 Identities=17% Similarity=0.153 Sum_probs=22.3
Q ss_pred HHHHhcCCChHHHHHHHHHHHhCCCCCCHh--hHHHHHHHHHccCCHHHHHHHHHHH
Q 015726 294 IHGFGKEGNLEGAKKLFASMTNGGCEPDSY--CFFMFTYFLCQGGEYETALKVCRAS 348 (401)
Q Consensus 294 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~~ 348 (401)
+.+|..+|++.+|+.+..++... -+.. +-..|+.-+...++.-+|-++..+.
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 34444555555555554444311 1111 1133444444555555555544443
No 256
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.62 E-value=0.49 Score=40.44 Aligned_cols=155 Identities=11% Similarity=0.099 Sum_probs=109.7
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhH----HHHHHHHHhcCCH
Q 015726 193 CESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVY----NIRIQSLCKLKRS 268 (401)
Q Consensus 193 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~ll~~~~~~~~~ 268 (401)
...|+..+|-..++++.+. .+.|...+...=.+|.-.|+.+.-...++++... ..++...| ..+..++..+|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3467888888889998876 5778888888888999999998888888888654 23444333 3444556678999
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhC---CCCCCHhhHHHHHHHHHccCCHHHHHHHH
Q 015726 269 EEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNG---GCEPDSYCFFMFTYFLCQGGEYETALKVC 345 (401)
Q Consensus 269 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 345 (401)
++|++.-++..+.+ +.|.-.-.+....+...|+..++.++..+-... +.-.-...|-...-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999888877764 336666677777888889999998887654432 11111233444455566778999999999
Q ss_pred HHHHH
Q 015726 346 RASMA 350 (401)
Q Consensus 346 ~~~~~ 350 (401)
++-+-
T Consensus 271 D~ei~ 275 (491)
T KOG2610|consen 271 DREIW 275 (491)
T ss_pred HHHHH
Confidence 86433
No 257
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.61 E-value=0.83 Score=38.44 Aligned_cols=151 Identities=12% Similarity=0.065 Sum_probs=100.8
Q ss_pred HHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 015726 82 VSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKN 161 (401)
Q Consensus 82 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 161 (401)
.......|++.+|..+|....... +.+......++.+|...|+.+.|..++..+....-.........-|..+.+...
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhc
Confidence 455678899999999998887332 222456778889999999999999999998764322222222233455555555
Q ss_pred HHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCHHhHHHHHHHHHccCChHHHH
Q 015726 162 YEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKS-IRPNATDFGLLLAGFYKEHKYEDVG 237 (401)
Q Consensus 162 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~ 237 (401)
..+..++-.+.-.. +-|...-..+...+...|+.+.|++.+-.+.+.. ---|...-..++..+.-.|.-+.+.
T Consensus 219 ~~~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~ 292 (304)
T COG3118 219 TPEIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLV 292 (304)
T ss_pred CCCHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHH
Confidence 55555555555321 3466677778888999999999998887775542 2335666777777777777444433
No 258
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.58 E-value=0.7 Score=34.75 Aligned_cols=85 Identities=16% Similarity=0.241 Sum_probs=42.5
Q ss_pred HHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 015726 79 SIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCIL 158 (401)
Q Consensus 79 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 158 (401)
..++..+...+....+..+++.+...+ +.+...++.++..|++.+ .....+.+.. ..+......++..|.+
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~--~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN--SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC--ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 345555555566666666666665332 133456666666666542 2333333331 0112223335555555
Q ss_pred cCCHHHHHHHHHhc
Q 015726 159 SKNYEEVKRIFTEF 172 (401)
Q Consensus 159 ~~~~~~a~~~~~~~ 172 (401)
.+.++++.-++.++
T Consensus 82 ~~l~~~~~~l~~k~ 95 (140)
T smart00299 82 AKLYEEAVELYKKD 95 (140)
T ss_pred cCcHHHHHHHHHhh
Confidence 56666666666555
No 259
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=95.50 E-value=0.11 Score=35.65 Aligned_cols=57 Identities=9% Similarity=0.119 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcccchh
Q 015726 340 TALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSGDMWNA 396 (401)
Q Consensus 340 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 396 (401)
+..+-++.+....+.|++.+..+.+++|.+.+++..|.++++.++.+..+....|..
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~ 84 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPY 84 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHH
Confidence 344444444444555555555555555555555555555555555553333334433
No 260
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=95.43 E-value=0.097 Score=35.56 Aligned_cols=45 Identities=7% Similarity=0.018 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 015726 305 GAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASM 349 (401)
Q Consensus 305 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 349 (401)
++.+-++.+....+.|++....+.+++|-+.+++..|.++++-.+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444444444444555555555555555555555555555555443
No 261
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.38 E-value=0.63 Score=43.42 Aligned_cols=184 Identities=9% Similarity=0.052 Sum_probs=102.8
Q ss_pred hhchhHHHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhh--hCCCCCCchh
Q 015726 35 ALTIKEKKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELK--TRPDLRQNER 112 (401)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~ 112 (401)
...-.+++.++.+++.+.|...+|+++|..+.-- -..+-+...|+.++-..+.++-. ......|
T Consensus 641 ~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMF-----------D~aQE~~~~g~~~eKKmL~RKRA~WAr~~keP--- 706 (1081)
T KOG1538|consen 641 VFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMF-----------DYAQEFLGSGDPKEKKMLIRKRADWARNIKEP--- 706 (1081)
T ss_pred HHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHH-----------HHHHHHhhcCChHHHHHHHHHHHHHhhhcCCc---
Confidence 3445567888888888888888888877655211 12344555565555444443321 0111111
Q ss_pred HHHHHHHHHHhcCChHHHHHHHH------HHhhCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHH
Q 015726 113 FHVHSIVLYGQANMIDHAMQTFE------EMDKYGL---RQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSE 183 (401)
Q Consensus 113 ~~~~li~~~~~~~~~~~a~~~~~------~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 183 (401)
......+...|+.++|..+.- -+.+-+- ..+..+...+..-+.+...+..|-++|.+|-+.
T Consensus 707 --kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~-------- 776 (1081)
T KOG1538|consen 707 --KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL-------- 776 (1081)
T ss_pred --HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH--------
Confidence 122333444555555544321 1111111 223445555555556667777888888887432
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH-----------hHHHHHHHHHccCChHHHHHHHHHHHHc
Q 015726 184 TYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNAT-----------DFGLLLAGFYKEHKYEDVGKVLQMMEKC 246 (401)
Q Consensus 184 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----------~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 246 (401)
..+++.....++|++|+.+-+...+. .||.. -|.-.-.+|.+.|+-.+|.++++++...
T Consensus 777 --ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 777 --KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred --HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 35667777888888888887775442 33332 2333446677778888888887777543
No 262
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.25 E-value=1.3 Score=36.00 Aligned_cols=225 Identities=17% Similarity=0.136 Sum_probs=108.9
Q ss_pred cCChHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHH
Q 015726 124 ANMIDHAMQTFEEMDKYGLRQ-SVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVY 202 (401)
Q Consensus 124 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 202 (401)
.+....+...+.......... ....+......+...+++..+...+...............+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 345555555555555443111 2455555666666666676666666665421011333444555555556666666666
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHH-HHHccCChHHHHHHHHHHHHcCC--CCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015726 203 SILAEMRRKSIRPNATDFGLLLA-GFYKEHKYEDVGKVLQMMEKCGI--ASGVNVYNIRIQSLCKLKRSEEAKALLDGML 279 (401)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 279 (401)
+.+.........+ ......... .+...|+++.+...+.+...... ......+......+...++.+.+...+....
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 6666665543222 111222222 55666666666666666544211 0112222233333444556666666666555
Q ss_pred HCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 015726 280 SRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPD-SYCFFMFTYFLCQGGEYETALKVCRASMAK 351 (401)
Q Consensus 280 ~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 351 (401)
..........+..+...+...++++.+...+....... |+ ...+..+...+...+..+.+...+.+....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 54211123445555555555555666666665555432 22 222333333333444555555555555443
No 263
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.17 E-value=1.7 Score=36.70 Aligned_cols=144 Identities=8% Similarity=0.004 Sum_probs=76.1
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChh
Q 015726 120 LYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSS 199 (401)
Q Consensus 120 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 199 (401)
.....|++.+|..+|+...... +-+...-..+..+|...|+.+.|..++..++.+.. .........-+..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~-~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ-DKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccch-hhHHHHHHHHHHHHHHHhcCC
Confidence 3456677777777777766654 23344555667777777777777777777754310 001111112334444444444
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcC-CCCCchhHHHHHHHHHhcCC
Q 015726 200 SVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCG-IASGVNVYNIRIQSLCKLKR 267 (401)
Q Consensus 200 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~ 267 (401)
+...+-.+.-.. +-|...-..+...+...|+.+.|.+.+-.+...+ -..|...-..++..+.-.|.
T Consensus 221 ~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 221 EIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred CHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 444444444332 2245555556666666677777666554443321 12244455555555555553
No 264
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=95.01 E-value=0.86 Score=37.96 Aligned_cols=132 Identities=11% Similarity=0.104 Sum_probs=87.0
Q ss_pred chhHHHHHHHHHHhcCCChhHHHHHhhhccCCC------CCCc------cHhHHHHHHHHHHhCCCchHHHHHHHHhhhC
Q 015726 37 TIKEKKRATIARLKSESNPFRILDICCGASLAP------ESPL------DRMAFSIAVSKLSQANHFNAISQLLEELKTR 104 (401)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 104 (401)
+....+..+.+.+.-..|+..|++.++...+.= +.+. -......-|.+++..++|.++....-+-...
T Consensus 33 ~a~~lLe~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~ 112 (309)
T PF07163_consen 33 PAVSLLEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQV 112 (309)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcC
Confidence 344678888888999999999998877542110 0110 1112334478888899999888866555544
Q ss_pred CCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH-----hcCCHHHHHHHH
Q 015726 105 PDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCI-----LSKNYEEVKRIF 169 (401)
Q Consensus 105 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~a~~~~ 169 (401)
+..-| ..+...-|-.|.+.+.+..+.++-..-...--..+...|..++..|. -.|.+++|+++.
T Consensus 113 pEklP-pkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 113 PEKLP-PKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred cccCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 54444 56777778888888988888888776665322333344666655554 468888888877
No 265
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.00 E-value=2.4 Score=37.63 Aligned_cols=53 Identities=13% Similarity=0.060 Sum_probs=31.4
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchh
Q 015726 118 IVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPK 174 (401)
Q Consensus 118 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 174 (401)
+.+.-+.|+++...+........ .++...+.++... +.++.+++....++...
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~ 57 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQ 57 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHH
Confidence 45566778888755555555432 2344444444433 67777777777776643
No 266
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.99 E-value=0.95 Score=33.00 Aligned_cols=56 Identities=16% Similarity=0.095 Sum_probs=30.4
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhc
Q 015726 120 LYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVY 176 (401)
Q Consensus 120 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 176 (401)
+.+..|+.+.|++.|.+.+..- +.....||.-..++.-.|+.++|++-+++..+-.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa 107 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELA 107 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 3445555666666655555442 3445555555555555555555555555554443
No 267
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.99 E-value=0.92 Score=39.28 Aligned_cols=232 Identities=6% Similarity=-0.050 Sum_probs=136.7
Q ss_pred HHhcCCChhHHHHHhhhccCCCC-CCccHhHHHHHHHHHHhCCCchHHHHHHH----HhhhCCCCCCchhHHHHHHHHHH
Q 015726 48 RLKSESNPFRILDICCGASLAPE-SPLDRMAFSIAVSKLSQANHFNAISQLLE----ELKTRPDLRQNERFHVHSIVLYG 122 (401)
Q Consensus 48 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~----~~~~~~~~~~~~~~~~~li~~~~ 122 (401)
.+-..++.++|+..+.....+-+ ...-..+|..+..+.++.|.+++++..-- -.....+...--..|..+.+++-
T Consensus 15 ~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e 94 (518)
T KOG1941|consen 15 QLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNE 94 (518)
T ss_pred hHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677888877665442211 11223477888888899998888665422 21111111111234556666666
Q ss_pred hcCChHHHHHHHHHHhhC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCC----CHHhHHHHHHHHHh
Q 015726 123 QANMIDHAMQTFEEMDKY-GLRQ---SVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEP----NSETYNKVIKSFCE 194 (401)
Q Consensus 123 ~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~ 194 (401)
+..++.+++.+-..-... |..| ......++..+....+.++++++.|+...+-..-.. ....+..|...|.+
T Consensus 95 ~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~ 174 (518)
T KOG1941|consen 95 KLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQ 174 (518)
T ss_pred HHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHH
Confidence 666777777766554331 1111 123444566777778889999999887754322222 23468889999999
Q ss_pred cCChhHHHHHHHHHHh----CCCCCCHHhHHH-----HHHHHHccCChHHHHHHHHHHHH----cCCCC-CchhHHHHHH
Q 015726 195 SGDSSSVYSILAEMRR----KSIRPNATDFGL-----LLAGFYKEHKYEDVGKVLQMMEK----CGIAS-GVNVYNIRIQ 260 (401)
Q Consensus 195 ~~~~~~a~~~~~~~~~----~~~~~~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~ll~ 260 (401)
..|+++|.-+..+..+ .++..=..-|.. +.-++...|+...|.+.-++..+ .|-.+ .......+.+
T Consensus 175 l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aD 254 (518)
T KOG1941|consen 175 LKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFAD 254 (518)
T ss_pred HHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 9999998877665533 222211112222 22345667777777777666543 33111 1233455677
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 015726 261 SLCKLKRSEEAKALLDGML 279 (401)
Q Consensus 261 ~~~~~~~~~~a~~~~~~~~ 279 (401)
.|-..|+.+.|+.-|+...
T Consensus 255 IyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 255 IYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHhcccHhHHHHHHHHHH
Confidence 8888999999888887654
No 268
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.96 E-value=2.1 Score=40.70 Aligned_cols=178 Identities=15% Similarity=0.090 Sum_probs=92.6
Q ss_pred hhHHHHHHHHHHhCCCCCCHHhHHHH----HHH-HHccCChHHHHHHHHHHHH-------cCCCCCchhHHHHHHHHHhc
Q 015726 198 SSSVYSILAEMRRKSIRPNATDFGLL----LAG-FYKEHKYEDVGKVLQMMEK-------CGIASGVNVYNIRIQSLCKL 265 (401)
Q Consensus 198 ~~~a~~~~~~~~~~~~~~~~~~~~~l----l~~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~ll~~~~~~ 265 (401)
...|.++++...+.|. ...-..+ ..+ +....+.+.|...|+.+.+ .| ......-+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g~---~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH---SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhcc---hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 3567777777766652 2221111 222 4455677777777777755 44 223455555666553
Q ss_pred C-----CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhc-CCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH--ccCC
Q 015726 266 K-----RSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGK-EGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLC--QGGE 337 (401)
Q Consensus 266 ~-----~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~-~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~--~~g~ 337 (401)
. +.+.|..++....+.|. |+...+-..+..... ..+...|.++|....+.|. +....+..+..... ...+
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~-~~A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH-ILAIYRLALCYELGLGVERN 379 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhCCCcCCC
Confidence 2 56667777777777763 343333222222222 2456778888887777662 22222222221111 2346
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 015726 338 YETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKK 385 (401)
Q Consensus 338 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 385 (401)
.+.|..++.+..+.| .|....-...+..+.. ++++.+.-.+..+.+
T Consensus 380 ~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~ 425 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAE 425 (552)
T ss_pred HHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHH
Confidence 777888887777776 3332222333333333 555555555444443
No 269
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.95 E-value=0.17 Score=42.60 Aligned_cols=106 Identities=16% Similarity=0.136 Sum_probs=77.5
Q ss_pred CCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCc-hhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHH
Q 015726 70 ESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQN-ERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDA 148 (401)
Q Consensus 70 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 148 (401)
+.+.+..+-..++.......+++.++..+-++...+....- ..+-...++.+. .-++++++.++..-+..|+-||-.+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcchhccccchhh
Confidence 34445556666777777788899999998888854432110 111223344433 3477799999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhchhhc
Q 015726 149 LNALLLGCILSKNYEEVKRIFTEFPKVY 176 (401)
Q Consensus 149 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 176 (401)
++.+|+.+.+.+++.+|.++...|..+.
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 9999999999999999999988887654
No 270
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.94 E-value=0.1 Score=30.00 Aligned_cols=27 Identities=11% Similarity=0.020 Sum_probs=14.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhC
Q 015726 114 HVHSIVLYGQANMIDHAMQTFEEMDKY 140 (401)
Q Consensus 114 ~~~li~~~~~~~~~~~a~~~~~~~~~~ 140 (401)
+..+...|.+.|++++|.++|++.++.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444455555555555555555555554
No 271
>PRK11906 transcriptional regulator; Provisional
Probab=94.91 E-value=1.4 Score=39.79 Aligned_cols=117 Identities=9% Similarity=0.016 Sum_probs=58.4
Q ss_pred ChhHHHHHhhhccCCCCCCc-cHhHHHHHHHHHHh---------CCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHh
Q 015726 54 NPFRILDICCGASLAPESPL-DRMAFSIAVSKLSQ---------ANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQ 123 (401)
Q Consensus 54 ~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 123 (401)
+.++|+.+|..+.......| ....|..+..++.. .....+|.++.+...... +.|......+..+...
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld--~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT--TVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHh
Confidence 44567777777762222222 23344333332211 122233444444444322 3334445555555555
Q ss_pred cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhch
Q 015726 124 ANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFP 173 (401)
Q Consensus 124 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 173 (401)
.++++.|..+|++....+ +....+|......+.-.|+.++|.+.+++..
T Consensus 351 ~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred hcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 566666777776666654 3334455544445555666666666666644
No 272
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.85 E-value=5 Score=40.62 Aligned_cols=115 Identities=14% Similarity=0.148 Sum_probs=70.1
Q ss_pred CCCHHhHHH----HHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH--
Q 015726 214 RPNATDFGL----LLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNL-- 287 (401)
Q Consensus 214 ~~~~~~~~~----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~-- 287 (401)
.|+...+.. ..+.+...+.+++|.-.|+..-+ ..-.+.+|..+|++.+|..+-.++.... +.
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~---de~~ 999 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGK---DELV 999 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCH---HHHH
Confidence 345444443 33444555667777666655422 2235677778888888888877664321 22
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHH
Q 015726 288 DTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRAS 348 (401)
Q Consensus 288 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 348 (401)
.+-..|+.-+...+++-+|-++..+.... ....+..|++...+++|.++....
T Consensus 1000 ~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1000 ILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 12256777778888888888888776642 233455566677777777766543
No 273
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.81 E-value=2.4 Score=36.58 Aligned_cols=133 Identities=8% Similarity=0.118 Sum_probs=75.2
Q ss_pred hhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc--cCC----hHHHHHHHHHHHHcCC---CCCchhHHHHHHHHHhcCC-
Q 015726 198 SSSVYSILAEMRRKSIRPNATDFGLLLAGFYK--EHK----YEDVGKVLQMMEKCGI---ASGVNVYNIRIQSLCKLKR- 267 (401)
Q Consensus 198 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~~----~~~a~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~~~- 267 (401)
+++...+++.|.+.|+.-+..+|-+..-.... ..+ ...+..+++.|.+... .++...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34566677778888877777666553333222 222 4467778888877532 1233444444433 3333
Q ss_pred ---HHHHHHHHHHHHHCCCCcC-H-HHHHHHHHHHhcCCC--hHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 015726 268 ---SEEAKALLDGMLSRGIKPN-L-DTYKHLIHGFGKEGN--LEGAKKLFASMTNGGCEPDSYCFFMFTYFL 332 (401)
Q Consensus 268 ---~~~a~~~~~~~~~~~~~p~-~-~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 332 (401)
.+.++.+|+.+.+.|+..+ . .....++..+..... ..++.++++.+.+.|+++....|..+.-..
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 3456777777777665443 2 223333332222222 346778888888888888777776654443
No 274
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.54 E-value=0.13 Score=27.40 Aligned_cols=33 Identities=15% Similarity=0.041 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC
Q 015726 358 STMKSLVTGLASISKVAEANELIGLMKKRFPKS 390 (401)
Q Consensus 358 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 390 (401)
..+..+...+...|++++|++.+++..+..|.|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 345666777777788888888777777766643
No 275
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.53 E-value=2.2 Score=34.94 Aligned_cols=93 Identities=16% Similarity=0.249 Sum_probs=45.6
Q ss_pred CCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHh
Q 015726 105 PDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSET 184 (401)
Q Consensus 105 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 184 (401)
++...-...|.....+|....++++|..-+.+..+. ...+...|. ....++.|.-+.+++.+- +--...
T Consensus 25 ad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl---sEvvdl 93 (308)
T KOG1585|consen 25 ADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL---SEVVDL 93 (308)
T ss_pred CCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh---HHHHHH
Confidence 333333455666666666666676666655555432 122222222 123345555555555321 111223
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHH
Q 015726 185 YNKVIKSFCESGDSSSVYSILAEM 208 (401)
Q Consensus 185 ~~~l~~~~~~~~~~~~a~~~~~~~ 208 (401)
|+--...|...|..+.|-..+++.
T Consensus 94 ~eKAs~lY~E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 94 YEKASELYVECGSPDTAAMALEKA 117 (308)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHH
Confidence 455555666666666655555554
No 276
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.46 E-value=0.53 Score=39.70 Aligned_cols=80 Identities=14% Similarity=0.201 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCCCCHHhH
Q 015726 146 VDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRR-----KSIRPNATDF 220 (401)
Q Consensus 146 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 220 (401)
..++..++..+...|+.+.+...++++.... +.+...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d--p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD--PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 3456667777777788888888877776543 56777788888888888888888877777644 4777777776
Q ss_pred HHHHHHH
Q 015726 221 GLLLAGF 227 (401)
Q Consensus 221 ~~ll~~~ 227 (401)
.......
T Consensus 231 ~~y~~~~ 237 (280)
T COG3629 231 ALYEEIL 237 (280)
T ss_pred HHHHHHh
Confidence 6666653
No 277
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.46 E-value=0.63 Score=39.27 Aligned_cols=78 Identities=12% Similarity=0.209 Sum_probs=50.1
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHh-----CCCCCCHhhHH
Q 015726 252 VNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTN-----GGCEPDSYCFF 326 (401)
Q Consensus 252 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~~~~ 326 (401)
..++..++..+...|+.+.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 4456666677777777777777777776664 23666777777777777777777777766654 25555554444
Q ss_pred HHHH
Q 015726 327 MFTY 330 (401)
Q Consensus 327 ~li~ 330 (401)
....
T Consensus 232 ~y~~ 235 (280)
T COG3629 232 LYEE 235 (280)
T ss_pred HHHH
Confidence 4433
No 278
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.43 E-value=3.9 Score=37.34 Aligned_cols=60 Identities=15% Similarity=0.007 Sum_probs=36.2
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHhCCCC-CCHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 015726 291 KHLIHGFGKEGNLEGAKKLFASMTNGGCE-PDSYCFFMFTYFLCQGGEYETALKVCRASMA 350 (401)
Q Consensus 291 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 350 (401)
..+..++.+.|+.++|.+.+++|.+..-. -+......|+.++...+.+.++..++.+-.+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 34555556667777777777777654211 1233455667777777777777777766543
No 279
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.26 E-value=1.8 Score=32.97 Aligned_cols=49 Identities=14% Similarity=0.182 Sum_probs=21.2
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHhch
Q 015726 123 QANMIDHAMQTFEEMDKYGLRQSVDALN-ALLLGCILSKNYEEVKRIFTEFP 173 (401)
Q Consensus 123 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~ 173 (401)
+.++.+++..+++.+.-. .|...... .-...++..|+|.+|..+|+++.
T Consensus 22 ~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELE 71 (160)
T ss_pred ccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 444555555555554433 22222111 11233444555555555555553
No 280
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.24 E-value=0.94 Score=38.40 Aligned_cols=100 Identities=16% Similarity=0.132 Sum_probs=50.1
Q ss_pred CCHHhHHHHHHHHHccCChHHHHHHHHHHHHc---CCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHH
Q 015726 215 PNATDFGLLLAGFYKEHKYEDVGKVLQMMEKC---GIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYK 291 (401)
Q Consensus 215 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 291 (401)
.+..+...++..-....+++.++..+-++... ...++... .++++.+. .-++++++.++..=.+-|+-||..+++
T Consensus 62 ~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c 139 (418)
T KOG4570|consen 62 VSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFC 139 (418)
T ss_pred cceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHH-ccChHHHHHHHhCcchhccccchhhHH
Confidence 34444444554444455566666555555332 11121111 11222222 234556666665555666666666666
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhC
Q 015726 292 HLIHGFGKEGNLEGAKKLFASMTNG 316 (401)
Q Consensus 292 ~li~~~~~~~~~~~a~~~~~~m~~~ 316 (401)
.+|..+.+.+++.+|.++...|...
T Consensus 140 ~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 140 LLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHH
Confidence 6666666666666666665555543
No 281
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=94.11 E-value=0.099 Score=27.59 Aligned_cols=31 Identities=26% Similarity=0.337 Sum_probs=23.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcCCCC
Q 015726 360 MKSLVTGLASISKVAEANELIGLMKKRFPKS 390 (401)
Q Consensus 360 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 390 (401)
+-.+..++.+.|++++|.+.|+++.+.+|.+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 3456677778888888888888888887753
No 282
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.99 E-value=1.6 Score=34.43 Aligned_cols=62 Identities=6% Similarity=-0.007 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHhhhCC-CCCCchhHHHHHHHHHHhcCChHHHHHHHHHHh
Q 015726 77 AFSIAVSKLSQANHFNAISQLLEELKTRP-DLRQNERFHVHSIVLYGQANMIDHAMQTFEEMD 138 (401)
Q Consensus 77 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 138 (401)
.+..+.+.|.+.|+.+.|.+.|..+.... ....-...+-.+|+.....+++..+...+.+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 45556666666666666666666655221 111112334455555556666666665555443
No 283
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.93 E-value=2.3 Score=38.76 Aligned_cols=156 Identities=15% Similarity=0.159 Sum_probs=87.9
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHH
Q 015726 227 FYKEHKYEDVGKVLQMMEKCGIASGV-NVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEG 305 (401)
Q Consensus 227 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~ 305 (401)
.-+..+...-.+.-++..+. .|+- ..|.. -+--....+.++++++++..+.|- ..+..-- .....|.
T Consensus 178 AWRERnp~aRIkaA~eALei--~pdCAdAYIL--LAEEeA~Ti~Eae~l~rqAvkAgE----~~lg~s~-~~~~~g~--- 245 (539)
T PF04184_consen 178 AWRERNPQARIKAAKEALEI--NPDCADAYIL--LAEEEASTIVEAEELLRQAVKAGE----ASLGKSQ-FLQHHGH--- 245 (539)
T ss_pred HHhcCCHHHHHHHHHHHHHh--hhhhhHHHhh--cccccccCHHHHHHHHHHHHHHHH----Hhhchhh-hhhcccc---
Confidence 33444555555555555443 2332 22222 222334567888888888776531 1111000 0001111
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 015726 306 AKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKG-WVPHFSTMKSLVTGLASISKVAEANELIGLMK 384 (401)
Q Consensus 306 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 384 (401)
.++........|-..+=..+..++.+.|+.++|.+.+++|.+.. ...+..+...|+.++...+.+.++..++.+..
T Consensus 246 ---~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 246 ---FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred ---hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 11112222222323333567778889999999999999998753 22345577889999999999999999999986
Q ss_pred hc-CCCCc-ccchhc
Q 015726 385 KR-FPKSG-DMWNAA 397 (401)
Q Consensus 385 ~~-~~~~~-~~~~~l 397 (401)
+. .|+.. ..|++.
T Consensus 323 Di~lpkSAti~YTaA 337 (539)
T PF04184_consen 323 DISLPKSATICYTAA 337 (539)
T ss_pred cccCCchHHHHHHHH
Confidence 55 33332 345543
No 284
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.85 E-value=2.2 Score=33.55 Aligned_cols=98 Identities=11% Similarity=0.128 Sum_probs=58.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHH--
Q 015726 111 ERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQS--VDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYN-- 186 (401)
Q Consensus 111 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-- 186 (401)
...+..+...|.+.|+.+.|.+.|.++.+....+. ...+-.+|......+++..+.....+.........|...-+
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 45566777888888888888888888877543332 34456677777788888887777776633211111111111
Q ss_pred HHHH--HHHhcCChhHHHHHHHHH
Q 015726 187 KVIK--SFCESGDSSSVYSILAEM 208 (401)
Q Consensus 187 ~l~~--~~~~~~~~~~a~~~~~~~ 208 (401)
.... .+...+++..|-+.|-+.
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHcc
Confidence 1111 123356777776666554
No 285
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.78 E-value=2.5 Score=32.69 Aligned_cols=124 Identities=14% Similarity=0.096 Sum_probs=64.1
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHH-hHHHHH--HHHHhcCC
Q 015726 122 GQANMIDHAMQTFEEMDKYGLRQSVD-ALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSE-TYNKVI--KSFCESGD 197 (401)
Q Consensus 122 ~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~--~~~~~~~~ 197 (401)
++.+..++|+.-|..+.+.|...-+. ...-........|+...|...|+++-.... .|-.. -..-|= -.+...|.
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~-~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTS-IPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCC-CcchhhHHHHHHHHHHHhcccc
Confidence 35566666666666666655432211 111122334556666667666766643311 12111 111111 12345566
Q ss_pred hhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 015726 198 SSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKC 246 (401)
Q Consensus 198 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 246 (401)
++......+.+...+.+.-...-..|.-+-.+.|++.+|.+.|..+.+.
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 6666666666655544444444555666666677777777777666553
No 286
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.60 E-value=7.7 Score=37.82 Aligned_cols=123 Identities=15% Similarity=0.089 Sum_probs=82.5
Q ss_pred HHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHH
Q 015726 41 KKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVL 120 (401)
Q Consensus 41 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 120 (401)
.+...+..+.+..-++-|+.+-+.....+. .-........+.+-+.|++++|.+.|-+.. +...+ ..+|.-
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d--~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI--~~le~-----s~Vi~k 406 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHLDED--TLAEIHRKYGDYLYGKGDFDEATDQYIETI--GFLEP-----SEVIKK 406 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCCCHH--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHc--ccCCh-----HHHHHH
Confidence 345566777777777777777665432211 112233344455667899999998887655 33333 245666
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhch
Q 015726 121 YGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFP 173 (401)
Q Consensus 121 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 173 (401)
|....++.+--.+++.+.+.|+. +...-..|+.+|.+.++.++..+..+...
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 77777888888889999988854 55566778999999998888777776653
No 287
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.50 E-value=0.19 Score=26.75 Aligned_cols=30 Identities=17% Similarity=0.040 Sum_probs=18.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Q 015726 359 TMKSLVTGLASISKVAEANELIGLMKKRFP 388 (401)
Q Consensus 359 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 388 (401)
+|..+...|...|++++|+..|++.++..|
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 455566666666666666666666666544
No 288
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.13 E-value=0.23 Score=27.01 Aligned_cols=26 Identities=12% Similarity=-0.035 Sum_probs=19.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHH
Q 015726 359 TMKSLVTGLASISKVAEANELIGLMK 384 (401)
Q Consensus 359 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 384 (401)
++..|...|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35677888888888888888888844
No 289
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.10 E-value=5.3 Score=34.48 Aligned_cols=130 Identities=14% Similarity=0.178 Sum_probs=68.4
Q ss_pred hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHhchhhcCC--CCCHHhHHHHHHHHHhcCCh
Q 015726 127 IDHAMQTFEEMDKYGLRQSVDALNALLLGCIL--SK----NYEEVKRIFTEFPKVYGI--EPNSETYNKVIKSFCESGDS 198 (401)
Q Consensus 127 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 198 (401)
+++...+++.|.+.|+..+..+|-+..-.... .. ....|..+|+.|.+.+.. .++...+..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44556678888888888777666553332222 22 245678888888665432 2344455555443 22332
Q ss_pred ----hHHHHHHHHHHhCCCCCCHH--hHHHHHHHHHccCC--hHHHHHHHHHHHHcCCCCCchhHHHH
Q 015726 199 ----SSVYSILAEMRRKSIRPNAT--DFGLLLAGFYKEHK--YEDVGKVLQMMEKCGIASGVNVYNIR 258 (401)
Q Consensus 199 ----~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l 258 (401)
+.+..+|+.+.+.|+..+.. ..+.++..+..... ...+.++++.+.+.|++.....|..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 45566667776666544322 22222322222111 23455666666666666655555444
No 290
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=92.76 E-value=5.5 Score=33.74 Aligned_cols=148 Identities=11% Similarity=0.121 Sum_probs=100.4
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHh-cC-ChHHHHHHHHHHhh-CCCCCCHHHHHHHHH
Q 015726 78 FSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQ-AN-MIDHAMQTFEEMDK-YGLRQSVDALNALLL 154 (401)
Q Consensus 78 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~-~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~ 154 (401)
|..++ .+...+.+|+.+|+..........|..+...+++.... .+ ....-.++.+-+.. .|-.++..+...++.
T Consensus 134 Y~~LV---k~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~ 210 (292)
T PF13929_consen 134 YWDLV---KRNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE 210 (292)
T ss_pred HHHHH---HhhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence 55554 34556677888888544223356667787888777665 22 22223333343333 233677778888999
Q ss_pred HHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHH-----HHhCCCCCCHHhHHHHHHHHH
Q 015726 155 GCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAE-----MRRKSIRPNATDFGLLLAGFY 228 (401)
Q Consensus 155 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~ll~~~~ 228 (401)
.+++.++|..-.++++......+...|...|..+|+...+.||..-..+++++ +.+.++..+...-..+-..+.
T Consensus 211 ~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~ 289 (292)
T PF13929_consen 211 ILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFK 289 (292)
T ss_pred HHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHH
Confidence 99999999999999988865545566888899999999999998888888765 345567766666655555443
No 291
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.68 E-value=3.3 Score=31.10 Aligned_cols=49 Identities=20% Similarity=0.175 Sum_probs=22.7
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHhch
Q 015726 123 QANMIDHAMQTFEEMDKYGLRQSVDAL-NALLLGCILSKNYEEVKRIFTEFP 173 (401)
Q Consensus 123 ~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~ 173 (401)
..++++++..+++.|.-. .|+..-. ..-...++..|+|++|..+|+++.
T Consensus 22 ~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~ 71 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELL 71 (153)
T ss_pred hcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhh
Confidence 345555555555555443 2222111 111223445556666666666654
No 292
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.60 E-value=3.9 Score=31.66 Aligned_cols=134 Identities=7% Similarity=0.094 Sum_probs=66.4
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 015726 132 QTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRK 211 (401)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 211 (401)
+++..+.+.+++|+...+..+++.+.+.|++.....++.- ++-+|.......+-.+. +....+.++=-+|.++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~-----~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY-----HVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh-----cccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence 3344555666677777777777777777766555444432 22444433333222222 2233344443344332
Q ss_pred CCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015726 212 SIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLS 280 (401)
Q Consensus 212 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 280 (401)
=...+..++..+...|++-+|.++.+..... +......++++..+.+|...-..+|+-..+
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0113445555666667766666666554222 112234455555555655555555554444
No 293
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=92.52 E-value=9.2 Score=35.77 Aligned_cols=326 Identities=10% Similarity=0.038 Sum_probs=152.1
Q ss_pred HHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHH
Q 015726 41 KKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVL 120 (401)
Q Consensus 41 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 120 (401)
.+..++.-..+..+.+.+...+..+... +|.--.-|......=.+.|..+.+.++|+..... ++.....|......
T Consensus 47 ~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a--ip~SvdlW~~Y~~f 122 (577)
T KOG1258|consen 47 AWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA--IPLSVDLWLSYLAF 122 (577)
T ss_pred chHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--hhhHHHHHHHHHHH
Confidence 3333343333333444444455555433 3333345666666666777777788888777622 23333444444333
Q ss_pred H-HhcCChHHHHHHHHHHhhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHH---Hh
Q 015726 121 Y-GQANMIDHAMQTFEEMDKY-GLR-QSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSF---CE 194 (401)
Q Consensus 121 ~-~~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~ 194 (401)
+ ...|+.+...+.|+..... |.. .....|...|.--..++++.....+|+++.+- | ...++....-| .+
T Consensus 123 ~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P-~~~~~~~f~~f~~~l~ 197 (577)
T KOG1258|consen 123 LKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----P-LHQLNRHFDRFKQLLN 197 (577)
T ss_pred HhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----h-hhHhHHHHHHHHHHHh
Confidence 3 3556777777777776552 211 13345666666666677777777777776531 1 11122111111 11
Q ss_pred c------CChhHHHHHHHHHHh--------------------CCCCCCHHh--HHHHHHHH-------HccCChHHHHHH
Q 015726 195 S------GDSSSVYSILAEMRR--------------------KSIRPNATD--FGLLLAGF-------YKEHKYEDVGKV 239 (401)
Q Consensus 195 ~------~~~~~a~~~~~~~~~--------------------~~~~~~~~~--~~~ll~~~-------~~~~~~~~a~~~ 239 (401)
. ...+++.++-..... .+.+.+..+ .+.+-..+ ............
T Consensus 198 ~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~ 277 (577)
T KOG1258|consen 198 QNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWG 277 (577)
T ss_pred cCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHh
Confidence 1 112222222111110 000001000 00111100 011111111111
Q ss_pred HHHHHHc---CC----CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHH
Q 015726 240 LQMMEKC---GI----ASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFAS 312 (401)
Q Consensus 240 ~~~~~~~---~~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 312 (401)
++.-... .+ .++..+|+..+.--...|+.+.+.-+|++..-. +..-...|-..+......|+.+-|..++..
T Consensus 278 fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~ 356 (577)
T KOG1258|consen 278 FEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLAR 356 (577)
T ss_pred hhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHh
Confidence 1111111 01 123456777777777788888888887776532 111233444445544555777777777766
Q ss_pred HHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 015726 313 MTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEAN 377 (401)
Q Consensus 313 m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 377 (401)
..+--++-.+.+--.-....-..|+++.|..+++...+.- +--+..-..-+....+.|..+.+.
T Consensus 357 ~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 357 ACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred hhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhh
Confidence 5554322222222222222334678888888888777653 222233334445555666666666
No 294
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.32 E-value=0.38 Score=26.16 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=18.3
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHH
Q 015726 324 CFFMFTYFLCQGGEYETALKVCRASM 349 (401)
Q Consensus 324 ~~~~li~~~~~~g~~~~a~~~~~~~~ 349 (401)
+|..|...|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35667777888888888888887744
No 295
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.25 E-value=4.3 Score=31.41 Aligned_cols=23 Identities=13% Similarity=0.226 Sum_probs=9.6
Q ss_pred hCCCCCCHHhHHHHHHHHHccCC
Q 015726 210 RKSIRPNATDFGLLLAGFYKEHK 232 (401)
Q Consensus 210 ~~~~~~~~~~~~~ll~~~~~~~~ 232 (401)
+.+++|+...+..+++.+.+.|+
T Consensus 22 ~~~i~~~~~L~~lli~lLi~~~~ 44 (167)
T PF07035_consen 22 QHNIPVQHELYELLIDLLIRNGQ 44 (167)
T ss_pred HcCCCCCHHHHHHHHHHHHHcCC
Confidence 33344444444444444444443
No 296
>PRK11906 transcriptional regulator; Provisional
Probab=92.13 E-value=9.1 Score=34.84 Aligned_cols=162 Identities=7% Similarity=-0.038 Sum_probs=99.2
Q ss_pred hHH--HHHHHHHHhC-----CCchHHHHHHHHhhhC-CCCCCchhHHHHHHHHHHh---------cCChHHHHHHHHHHh
Q 015726 76 MAF--SIAVSKLSQA-----NHFNAISQLLEELKTR-PDLRQNERFHVHSIVLYGQ---------ANMIDHAMQTFEEMD 138 (401)
Q Consensus 76 ~~~--~~l~~~~~~~-----~~~~~a~~~~~~~~~~-~~~~~~~~~~~~li~~~~~---------~~~~~~a~~~~~~~~ 138 (401)
..| ...+.+..+. ...+.|..+|.+.... +..|.....|..+..++.. .....+|.++-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 5556555552 2345688889888722 2223334455555443331 234566777777788
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCH-HhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCC
Q 015726 139 KYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNS-ETYNKVIKSFCESGDSSSVYSILAEMRRKS-IRPN 216 (401)
Q Consensus 139 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~ 216 (401)
+.+ +.|......+..+..-.++.+.|..+|++...- .||. .+|....-.+.-.|+.++|.+.+++..+.. ...-
T Consensus 332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L---~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~ 407 (458)
T PRK11906 332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIH---STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRK 407 (458)
T ss_pred hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc---CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhH
Confidence 877 668888888877777788899999999988643 5553 345444455556789999999998865432 2222
Q ss_pred HHhHHHHHHHHHccCChHHHHHHHHH
Q 015726 217 ATDFGLLLAGFYKEHKYEDVGKVLQM 242 (401)
Q Consensus 217 ~~~~~~ll~~~~~~~~~~~a~~~~~~ 242 (401)
.......++.|+.. ..+.+.+++-+
T Consensus 408 ~~~~~~~~~~~~~~-~~~~~~~~~~~ 432 (458)
T PRK11906 408 AVVIKECVDMYVPN-PLKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHHHHcCC-chhhhHHHHhh
Confidence 33344445555554 45666666543
No 297
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=92.10 E-value=3 Score=33.16 Aligned_cols=74 Identities=9% Similarity=0.037 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHccCCHHHHH
Q 015726 303 LEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAK---GWVPHFSTMKSLVTGLASISKVAEAN 377 (401)
Q Consensus 303 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~ 377 (401)
-+.|.+.|-.+...+.--++.....+...|. ..+.+++..++.+..+. +-.+|+..+..|+..|.+.|+++.|.
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3456666666666554444444455444444 55666777766666554 22566777777777777777776664
No 298
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=92.04 E-value=9.8 Score=34.99 Aligned_cols=180 Identities=13% Similarity=0.097 Sum_probs=116.7
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHH
Q 015726 107 LRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYN 186 (401)
Q Consensus 107 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 186 (401)
.+.|.....+++..++......-+..+..+|...| -+...+..++.+|... ..+.-..+|+++.+- --|.....
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~---dfnDvv~~ 135 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEY---DFNDVVIG 135 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHh---cchhHHHH
Confidence 34455677888888888888888889999998876 3667788888888887 566777888877543 33444444
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCC-----CHHhHHHHHHHHHccCChHHHHHHHHHHHHc-CCCCCchhHHHHHH
Q 015726 187 KVIKSFCESGDSSSVYSILAEMRRKSIRP-----NATDFGLLLAGFYKEHKYEDVGKVLQMMEKC-GIASGVNVYNIRIQ 260 (401)
Q Consensus 187 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~ 260 (401)
--+..+...++.+.+..+|.+...+-++. =...|..+... -..+.+....+...+... |...-...+.-+-.
T Consensus 136 ReLa~~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~ 213 (711)
T COG1747 136 RELADKYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYK 213 (711)
T ss_pred HHHHHHHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 44444444478888888888776542211 11245544432 234677777777777543 33334455566667
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 015726 261 SLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIH 295 (401)
Q Consensus 261 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 295 (401)
-|....++++|++++..+.+..-+ |...-..++.
T Consensus 214 ~Ys~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~ 247 (711)
T COG1747 214 KYSENENWTEAIRILKHILEHDEK-DVWARKEIIE 247 (711)
T ss_pred HhccccCHHHHHHHHHHHhhhcch-hhhHHHHHHH
Confidence 788888999999999888776432 4444444443
No 299
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.78 E-value=1.4 Score=34.79 Aligned_cols=87 Identities=17% Similarity=0.058 Sum_probs=37.9
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcC-----HHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHcc
Q 015726 262 LCKLKRSEEAKALLDGMLSRGIKPN-----LDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPD-SYCFFMFTYFLCQG 335 (401)
Q Consensus 262 ~~~~~~~~~a~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~ 335 (401)
+.+.|++++|..-|.+..+. +++. ...|..-..++.+.+.++.|++-....++.+ |+ ......-..+|.+.
T Consensus 105 ~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYEKM 181 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHHhh
Confidence 34455555555555555543 1111 1122222334444555555555555544432 21 11122223345555
Q ss_pred CCHHHHHHHHHHHHHC
Q 015726 336 GEYETALKVCRASMAK 351 (401)
Q Consensus 336 g~~~~a~~~~~~~~~~ 351 (401)
..+++|+.=+.++.+.
T Consensus 182 ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 182 EKYEEALEDYKKILES 197 (271)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 5555555555555544
No 300
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.77 E-value=4.7 Score=30.82 Aligned_cols=71 Identities=20% Similarity=0.223 Sum_probs=44.9
Q ss_pred HHHHhCCCchHHHHHHHHhh-hCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 015726 83 SKLSQANHFNAISQLLEELK-TRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCIL 158 (401)
Q Consensus 83 ~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 158 (401)
..-.+.++.+++..++..+. -+|..+. ..++. ...+...|++.+|..+|+++.+.. |....-..|+..|..
T Consensus 18 ~~al~~~~~~D~e~lL~ALrvLRP~~~e-~~~~~--~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRVLRPEFPE-LDLFD--GWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLY 89 (160)
T ss_pred HHHHccCChHHHHHHHHHHHHhCCCchH-HHHHH--HHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHH
Confidence 34456778888888888877 4454444 33333 344667888889998888886653 444444455554443
No 301
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.67 E-value=0.24 Score=26.57 Aligned_cols=30 Identities=10% Similarity=0.014 Sum_probs=17.5
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 015726 347 ASMAKGWVPHFSTMKSLVTGLASISKVAEAN 377 (401)
Q Consensus 347 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 377 (401)
+.++.. +-+...|..+...|...|++++|+
T Consensus 4 kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 4 KAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 344433 445666666666666666666664
No 302
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.38 E-value=14 Score=35.38 Aligned_cols=82 Identities=12% Similarity=0.135 Sum_probs=36.2
Q ss_pred hCCCchHHHHHHHHhhh-------CCCCCCchhHHHHHHHHHHhcC-----ChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 015726 87 QANHFNAISQLLEELKT-------RPDLRQNERFHVHSIVLYGQAN-----MIDHAMQTFEEMDKYGLRQSVDALNALLL 154 (401)
Q Consensus 87 ~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~~li~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 154 (401)
...+.+.|+.+++.... .+ . ......+..+|.+.. +.+.|..++....+.| .|+....-..+.
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~-~---~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~ 335 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKG-L---PPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLY 335 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhc-C---CccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 44555666666655543 11 1 112334444444322 3455666666555555 334433322222
Q ss_pred HHHh-cCCHHHHHHHHHhch
Q 015726 155 GCIL-SKNYEEVKRIFTEFP 173 (401)
Q Consensus 155 ~~~~-~~~~~~a~~~~~~~~ 173 (401)
.... ..+...|.++|....
T Consensus 336 ~~g~~~~d~~~A~~yy~~Aa 355 (552)
T KOG1550|consen 336 ETGTKERDYRRAFEYYSLAA 355 (552)
T ss_pred HcCCccccHHHHHHHHHHHH
Confidence 2221 134455555555553
No 303
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=91.37 E-value=6.6 Score=31.72 Aligned_cols=224 Identities=16% Similarity=0.065 Sum_probs=117.2
Q ss_pred CCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 015726 89 NHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKY-GLRQSVDALNALLLGCILSKNYEEVKR 167 (401)
Q Consensus 89 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~ 167 (401)
+....+...+......................+...+.+..+...+...... ........+......+...++...+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4445555555554422211111345555566666667777777666666542 123344555555556666666666766
Q ss_pred HHHhchhhcCCCCCH-HhHHHHHH-HHHhcCChhHHHHHHHHHHhCCC--CCCHHhHHHHHHHHHccCChHHHHHHHHHH
Q 015726 168 IFTEFPKVYGIEPNS-ETYNKVIK-SFCESGDSSSVYSILAEMRRKSI--RPNATDFGLLLAGFYKEHKYEDVGKVLQMM 243 (401)
Q Consensus 168 ~~~~~~~~~~~~~~~-~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 243 (401)
.+...... .++. ........ .+...|+++.+...+.+...... ......+......+...++.+.+...+...
T Consensus 117 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 117 LLEKALAL---DPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHHcC---CCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 66666432 1221 22222222 56666777777777776644211 012233333334455566677777777666
Q ss_pred HHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 015726 244 EKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNG 316 (401)
Q Consensus 244 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 316 (401)
...........+..+...+...++++.+...+......... ....+..+...+...+..+.+...+......
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 194 LKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 66431113455666666666666677777777666654211 1233333333333555666666666666654
No 304
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=91.31 E-value=12 Score=34.49 Aligned_cols=181 Identities=10% Similarity=0.069 Sum_probs=115.3
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHH
Q 015726 179 EPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIR 258 (401)
Q Consensus 179 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 258 (401)
+.|....-+++..+.....+.-+..+..+|...| -+...|..++.+|... ..++-..+++++.+..+. |+..-..+
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 5566667778888888778888888888887764 3566777788877776 667777788877776543 44444455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCC-----cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhC-CCCCCHhhHHHHHHHH
Q 015726 259 IQSLCKLKRSEEAKALLDGMLSRGIK-----PNLDTYKHLIHGFGKEGNLEGAKKLFASMTNG-GCEPDSYCFFMFTYFL 332 (401)
Q Consensus 259 l~~~~~~~~~~~a~~~~~~~~~~~~~-----p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~ 332 (401)
...|.+ ++...+..+|.+....-+. .-...|..+... -..+.+....+..++... |..--...+.-+-.-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 555544 7777777777777655211 012345555542 234666666666666643 4444455566666777
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 015726 333 CQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGL 367 (401)
Q Consensus 333 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 367 (401)
....++++|.+++....+.+ ..|.-.-..++.-+
T Consensus 216 s~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 216 SENENWTEAIRILKHILEHD-EKDVWARKEIIENL 249 (711)
T ss_pred ccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence 77788888888888777764 33444444444443
No 305
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=91.31 E-value=15 Score=35.67 Aligned_cols=184 Identities=11% Similarity=0.085 Sum_probs=103.2
Q ss_pred HHHHhhhccCCCCCCcc--HhHHHHHHHHHH-hCCCchHHHHHHHHhhhC---CCCCCchhH--HHHHHHHHHhcCChHH
Q 015726 58 ILDICCGASLAPESPLD--RMAFSIAVSKLS-QANHFNAISQLLEELKTR---PDLRQNERF--HVHSIVLYGQANMIDH 129 (401)
Q Consensus 58 A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~---~~~~~~~~~--~~~li~~~~~~~~~~~ 129 (401)
|+..++....+...+|. ..++-.+...+. ...+++.|...+++.... ++... ..+ ...++..+.+.+...
T Consensus 40 ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d-~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 40 AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTD-LKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH-HHHHHHHHHHHHHHhcCHHH-
Confidence 34444444434334443 345555666665 678999999999987622 22211 111 223455666665555
Q ss_pred HHHHHHHHhhCC----CCCCHHHHHHH-HHHHHhcCCHHHHHHHHHhchhhcCCCCC--HHhHHHHHHHHH--hcCChhH
Q 015726 130 AMQTFEEMDKYG----LRQSVDALNAL-LLGCILSKNYEEVKRIFTEFPKVYGIEPN--SETYNKVIKSFC--ESGDSSS 200 (401)
Q Consensus 130 a~~~~~~~~~~~----~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~--~~~~~~~ 200 (401)
|...+++.++.- ..+-...|..+ +..+...++...|.+.++.+........| ..++..++.+.. +.+..+.
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d 197 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDD 197 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchh
Confidence 888888866532 11222333333 33333447999999999888655432233 334444555443 3455677
Q ss_pred HHHHHHHHHhCC---------CCCCHHhHHHHHHHH--HccCChHHHHHHHHHH
Q 015726 201 VYSILAEMRRKS---------IRPNATDFGLLLAGF--YKEHKYEDVGKVLQMM 243 (401)
Q Consensus 201 a~~~~~~~~~~~---------~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~ 243 (401)
+.+.++++.... ..|...+|..+++.+ ...|+++.+...++++
T Consensus 198 ~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 198 VLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777777763322 133456677776655 4567766776665555
No 306
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=91.20 E-value=13 Score=34.81 Aligned_cols=311 Identities=11% Similarity=0.075 Sum_probs=183.1
Q ss_pred cHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 015726 74 DRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALL 153 (401)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 153 (401)
+...|+.+|.---...+.+.+..++..+. +..|.-...|......=.+.|..+.+.++|++-+. |++.+...|...+
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL--~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFL--SKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHH--hhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHH
Confidence 45567777766666666677777888776 23344355777777777899999999999999876 4567777777766
Q ss_pred HHHH-hcCCHHHHHHHHHhchhhcCCC-CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc--
Q 015726 154 LGCI-LSKNYEEVKRIFTEFPKVYGIE-PNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYK-- 229 (401)
Q Consensus 154 ~~~~-~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-- 229 (401)
..+. ..|+.+...+.|+....-.|.. .....|...|..-...+++.....+|+++++....-=...|.........
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~ 200 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNE 200 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCC
Confidence 5444 5678888888898886655543 23446777777778888999999999998865211111112211111111
Q ss_pred ---cCChHHHHHHHHHHHH--------------------cCCCCCc--hhHHHHHH-------HHHhcCCHHHHHHHHHH
Q 015726 230 ---EHKYEDVGKVLQMMEK--------------------CGIASGV--NVYNIRIQ-------SLCKLKRSEEAKALLDG 277 (401)
Q Consensus 230 ---~~~~~~a~~~~~~~~~--------------------~~~~~~~--~~~~~ll~-------~~~~~~~~~~a~~~~~~ 277 (401)
....+++.++-....+ .+.+.+. ...+.+-. ++-......+..-.|+.
T Consensus 201 ~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~ 280 (577)
T KOG1258|consen 201 EKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEE 280 (577)
T ss_pred hhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhh
Confidence 1122333322222111 0000000 01111111 11111122222222222
Q ss_pred HHHC---CCC----cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 015726 278 MLSR---GIK----PNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMA 350 (401)
Q Consensus 278 ~~~~---~~~----p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 350 (401)
-... -++ ++..+|..-+..-...|+.+.+.-+|+...-- +..=...|-..+.-....|+.+-|..++....+
T Consensus 281 ~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~ 359 (577)
T KOG1258|consen 281 GIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACK 359 (577)
T ss_pred hccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhh
Confidence 2221 122 24567888888888899999999998887631 112234555666666667999999988887666
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Q 015726 351 KGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFP 388 (401)
Q Consensus 351 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 388 (401)
--.+..+.+-..-....-..|+++.|..+++.+.+..|
T Consensus 360 i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~p 397 (577)
T KOG1258|consen 360 IHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYP 397 (577)
T ss_pred hcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCC
Confidence 54333332222222223347899999999999988773
No 307
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.13 E-value=0.32 Score=26.08 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=10.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHH
Q 015726 144 QSVDALNALLLGCILSKNYEEV 165 (401)
Q Consensus 144 ~~~~~~~~l~~~~~~~~~~~~a 165 (401)
-+...|+.+...|...|++++|
T Consensus 11 ~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 11 NNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CCHHHHHHHHHHHHHCcCHHhh
Confidence 3444455555555555555444
No 308
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.02 E-value=6 Score=37.02 Aligned_cols=46 Identities=13% Similarity=-0.060 Sum_probs=23.1
Q ss_pred HhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHh
Q 015726 86 SQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMD 138 (401)
Q Consensus 86 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 138 (401)
.+.|+++.|.++..+.. +..-|..|.++....|++..|.+.|....
T Consensus 648 l~lgrl~iA~~la~e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN-------SEVKWRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred hhcCcHHHHHHHHHhhc-------chHHHHHHHHHHhhcccchhHHHHHHhhc
Confidence 45555555555544432 12235555555555555555555555443
No 309
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=90.95 E-value=2.7 Score=37.99 Aligned_cols=133 Identities=11% Similarity=0.033 Sum_probs=87.2
Q ss_pred HHhcCCHHHHHH-HHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHH
Q 015726 262 LCKLKRSEEAKA-LLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYET 340 (401)
Q Consensus 262 ~~~~~~~~~a~~-~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 340 (401)
-...|++-.|-+ ++.-+....-.|+.....+.|. ...|+++.+.+.+...... +.....+..++++...+.|+++.
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~--~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIF--SHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHH--HHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHH
Confidence 334577666544 4444444434455555444443 5678888888887765543 33456678888888888999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcccchhcC
Q 015726 341 ALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSGDMWNAAL 398 (401)
Q Consensus 341 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ll 398 (401)
|...-+-|....+. ++++...-.......|-++++.-.|+++....|+....|-..+
T Consensus 376 a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~ 432 (831)
T PRK15180 376 ALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFL 432 (831)
T ss_pred HHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeee
Confidence 99988888876654 4444444444444567888888888888887777666554443
No 310
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=89.93 E-value=0.73 Score=24.36 Aligned_cols=30 Identities=17% Similarity=0.044 Sum_probs=18.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Q 015726 359 TMKSLVTGLASISKVAEANELIGLMKKRFP 388 (401)
Q Consensus 359 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 388 (401)
+|..+...|...|++++|.+.|++..+..|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 445555666666666666666666655433
No 311
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=89.76 E-value=0.75 Score=33.11 Aligned_cols=47 Identities=13% Similarity=0.075 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 015726 305 GAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAK 351 (401)
Q Consensus 305 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 351 (401)
+..+-++.....++.|++......+++|-+.+++..|.++|+-.+.+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 44455555555566677777777777777777777777777655443
No 312
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=89.60 E-value=3.4 Score=28.35 Aligned_cols=45 Identities=9% Similarity=0.135 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHH
Q 015726 200 SVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMME 244 (401)
Q Consensus 200 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 244 (401)
++.+-++.+....+.|+.......+++|.+.+|+..|.++|+-++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444555555555556666666666666666666666666666554
No 313
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=89.22 E-value=5 Score=32.01 Aligned_cols=73 Identities=11% Similarity=-0.025 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhC---CCCCCHhhHHHHHHHHHccCCHHHHH
Q 015726 269 EEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNG---GCEPDSYCFFMFTYFLCQGGEYETAL 342 (401)
Q Consensus 269 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~~~li~~~~~~g~~~~a~ 342 (401)
+.|.+.|-.+...+.--++.....|...|. ..+.+++.+++.+..+. +-.+|+..+..|+..+.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 445555555555543334444444444333 44666666666555533 22455666666666666666666553
No 314
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=88.99 E-value=16 Score=32.40 Aligned_cols=65 Identities=17% Similarity=0.012 Sum_probs=44.6
Q ss_pred CHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCC---CchhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015726 216 NATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIAS---GVNVYNIRIQSLCKLKRSEEAKALLDGMLS 280 (401)
Q Consensus 216 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 280 (401)
...+|..+...+.+.|.++.|...+..+...+... ...+.-.-+...-..|+..+|...++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44567777788888888888888888776643211 233444455666677888888888877776
No 315
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.80 E-value=1.2 Score=24.83 Aligned_cols=29 Identities=21% Similarity=0.218 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 015726 358 STMKSLVTGLASISKVAEANELIGLMKKR 386 (401)
Q Consensus 358 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 386 (401)
.+++.+...|...|++++|..++++..+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46777888888888888888888877654
No 316
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=88.61 E-value=6.4 Score=27.39 Aligned_cols=48 Identities=15% Similarity=0.224 Sum_probs=31.0
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhc
Q 015726 129 HAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVY 176 (401)
Q Consensus 129 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 176 (401)
+..+-++.+....+.|++.+..+.+.+|.+.+++..|.++|+-+....
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~ 75 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC 75 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc
Confidence 555666666667777777777777777777777777777777775543
No 317
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=88.45 E-value=17 Score=33.26 Aligned_cols=90 Identities=13% Similarity=0.143 Sum_probs=58.2
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHH
Q 015726 191 SFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEE 270 (401)
Q Consensus 191 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 270 (401)
.+...|+++.+...+....+. +.....+..++++...+.|+++.|..+-+.|....++ +..+........-..|-+++
T Consensus 332 i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~ 409 (831)
T PRK15180 332 IFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDK 409 (831)
T ss_pred HHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHH
Confidence 345667888887777665443 3445667777788888888888888887777665544 33333333333344567778
Q ss_pred HHHHHHHHHHCC
Q 015726 271 AKALLDGMLSRG 282 (401)
Q Consensus 271 a~~~~~~~~~~~ 282 (401)
+...|+++...+
T Consensus 410 ~~~~wk~~~~~~ 421 (831)
T PRK15180 410 SYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHhccC
Confidence 888887776553
No 318
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=88.18 E-value=1.6 Score=37.55 Aligned_cols=88 Identities=15% Similarity=0.016 Sum_probs=48.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCH
Q 015726 260 QSLCKLKRSEEAKALLDGMLSRGIKP-NLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEY 338 (401)
Q Consensus 260 ~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 338 (401)
.-|.+.|.+++|++.|..-... .| |.+++..-..+|.+...+..|..=....+..+ ..-...|..-+.+-...|..
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence 4566777777777777766554 33 66666666677777777776665555554321 01112233333333334555
Q ss_pred HHHHHHHHHHHH
Q 015726 339 ETALKVCRASMA 350 (401)
Q Consensus 339 ~~a~~~~~~~~~ 350 (401)
.+|.+=++..++
T Consensus 182 ~EAKkD~E~vL~ 193 (536)
T KOG4648|consen 182 MEAKKDCETVLA 193 (536)
T ss_pred HHHHHhHHHHHh
Confidence 555555555443
No 319
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=88.02 E-value=13 Score=30.15 Aligned_cols=63 Identities=14% Similarity=0.072 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhh
Q 015726 112 RFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKV 175 (401)
Q Consensus 112 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 175 (401)
.+||.+...+...|+++.|.+.|+...+.+..-+-...|.-|.. .-.|+++-|.+-+.+.-+.
T Consensus 100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~-YY~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 100 EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL-YYGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred HHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee-eecCchHhhHHHHHHHHhc
Confidence 47888888888888888888888888876533232333333332 3357777777766666444
No 320
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=87.99 E-value=0.23 Score=37.57 Aligned_cols=85 Identities=16% Similarity=0.147 Sum_probs=60.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCC
Q 015726 258 RIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGE 337 (401)
Q Consensus 258 ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 337 (401)
++..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++. .+..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 5677777788888888888888766555678888888888888777777777761 122334566777888888
Q ss_pred HHHHHHHHHHHH
Q 015726 338 YETALKVCRASM 349 (401)
Q Consensus 338 ~~~a~~~~~~~~ 349 (401)
++++.-++.++-
T Consensus 86 ~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 86 YEEAVYLYSKLG 97 (143)
T ss_dssp HHHHHHHHHCCT
T ss_pred HHHHHHHHHHcc
Confidence 888888777543
No 321
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=87.79 E-value=51 Score=36.80 Aligned_cols=313 Identities=9% Similarity=0.003 Sum_probs=167.8
Q ss_pred HHHhcCCChhHHHHHhhhccCC-CCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcC
Q 015726 47 ARLKSESNPFRILDICCGASLA-PESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQAN 125 (401)
Q Consensus 47 ~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 125 (401)
.+-.+.+.+.+|+-.++..... .........|..+...|+..++++...-+...-...+ . +..-|......|
T Consensus 1391 ~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~------s-l~~qil~~e~~g 1463 (2382)
T KOG0890|consen 1391 RASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADP------S-LYQQILEHEASG 1463 (2382)
T ss_pred HHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCc------c-HHHHHHHHHhhc
Confidence 3445666788888888773111 1111223344455558999999998877776422122 1 334455566789
Q ss_pred ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHH-HHHHHHhcCChhHHHHH
Q 015726 126 MIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNK-VIKSFCESGDSSSVYSI 204 (401)
Q Consensus 126 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~ 204 (401)
+++.|..-|+.+.+.+ ++...+++-++......|.++.++...+-.... ..+....+++ =+.+-.+.+++|...+.
T Consensus 1464 ~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~--~se~~~~~~s~~~eaaW~l~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1464 NWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN--RSEEVDELNSLGVEAAWRLSQWDLLESY 1540 (2382)
T ss_pred cHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc--cCHHHHHHHHHHHHHHhhhcchhhhhhh
Confidence 9999999999999876 445777777777777788888887766665322 1333333433 33444778888887777
Q ss_pred HHHHHhCCCCCCHHhHHHH--HHHHHcc--CChHHHHHHHHHHHHc--------CCC-CCchhHHHHHHHHHhcCCHHHH
Q 015726 205 LAEMRRKSIRPNATDFGLL--LAGFYKE--HKYEDVGKVLQMMEKC--------GIA-SGVNVYNIRIQSLCKLKRSEEA 271 (401)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~l--l~~~~~~--~~~~~a~~~~~~~~~~--------~~~-~~~~~~~~ll~~~~~~~~~~~a 271 (401)
.. +. +..+|... .....+. .|.-...+..+.+.+. +.. .-...|..++....-.. -
T Consensus 1541 l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e----l 1609 (2382)
T KOG0890|consen 1541 LS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLE----L 1609 (2382)
T ss_pred hh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHH----H
Confidence 66 11 22222222 2222222 2221121233322221 111 11133444443332211 1
Q ss_pred HHHHHHHHHCCCCcCH------HHHHHHHH---HHhcCCChHHHHHHHHHHHhCCCCC-----CHhhHHHHHHHHHccCC
Q 015726 272 KALLDGMLSRGIKPNL------DTYKHLIH---GFGKEGNLEGAKKLFASMTNGGCEP-----DSYCFFMFTYFLCQGGE 337 (401)
Q Consensus 272 ~~~~~~~~~~~~~p~~------~~~~~li~---~~~~~~~~~~a~~~~~~m~~~~~~~-----~~~~~~~li~~~~~~g~ 337 (401)
....+... ++.++. .-|..-+. .+.+..++-.|.+ +.+......| -..+|....+.....|.
T Consensus 1610 ~~~~~~l~--~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~R--Rs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~ 1685 (2382)
T KOG0890|consen 1610 ENSIEELK--KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFR--RSMLDLRMRSNLKSRLGECWLQSARIARLAGH 1685 (2382)
T ss_pred HHHHHHhh--ccCccccccccchhHHHHHHHhchhHHHHhHHHHHH--HHHHHHhccccccchhHHHHHHHHHHHHhccc
Confidence 11111111 112221 12221221 1222111111111 1111111121 24678888888888999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 015726 338 YETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRF 387 (401)
Q Consensus 338 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 387 (401)
++.|...+-++.+.+ . +..+.-.+...-..|+...|+.++++..++.
T Consensus 1686 ~q~A~nall~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1686 LQRAQNALLNAKESR-L--PEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHhhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 999999887777765 2 3456666777888999999999999998773
No 322
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.40 E-value=22 Score=36.31 Aligned_cols=145 Identities=9% Similarity=0.102 Sum_probs=93.3
Q ss_pred ccccCCCcchhhchhHHHHHHHHHHhcCCChhHHHHHhhhccCC--CCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhh
Q 015726 25 SLLSAGDEAAALTIKEKKRATIARLKSESNPFRILDICCGASLA--PESPLDRMAFSIAVSKLSQANHFNAISQLLEELK 102 (401)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 102 (401)
+......+..+.....-+..+++++.+.+-++.+.++-..+.+. +..+.-..+++.+.+.....|.+.+|...+ .
T Consensus 969 sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai---~ 1045 (1480)
T KOG4521|consen 969 SVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAI---L 1045 (1480)
T ss_pred chhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHH---H
Confidence 44444444444455677889999999999999998887665422 223333457788888888888888876654 3
Q ss_pred hCCCCCCchhHHHHHHHHHHhcCChHH------------HHH-HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 015726 103 TRPDLRQNERFHVHSIVLYGQANMIDH------------AMQ-TFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIF 169 (401)
Q Consensus 103 ~~~~~~~~~~~~~~li~~~~~~~~~~~------------a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 169 (401)
..++..........++.....+|.++. ... +++..-+.........|+.|-..+...+++.+|-.+.
T Consensus 1046 ~npdserrrdcLRqlvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvM 1125 (1480)
T KOG4521|consen 1046 RNPDSERRRDCLRQLVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVM 1125 (1480)
T ss_pred cCCcHHHHHHHHHHHHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHH
Confidence 355544445567777878888887543 333 3333333332334455776777778888998877665
Q ss_pred Hhc
Q 015726 170 TEF 172 (401)
Q Consensus 170 ~~~ 172 (401)
-+.
T Consensus 1126 YEy 1128 (1480)
T KOG4521|consen 1126 YEY 1128 (1480)
T ss_pred HHH
Confidence 544
No 323
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=87.20 E-value=33 Score=34.03 Aligned_cols=301 Identities=12% Similarity=0.059 Sum_probs=147.1
Q ss_pred hHHHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHH----HhCCCchHHHHHHHHhhhCCCCCCchhHH
Q 015726 39 KEKKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKL----SQANHFNAISQLLEELKTRPDLRQNERFH 114 (401)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 114 (401)
++....+..-+...|.+.+|++.--.+. |......++..+ ...+++.....+.+.+... -...++...
T Consensus 347 ~~lH~~Aa~w~~~~g~~~eAI~hAlaA~-------d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~-~l~~~P~Lv 418 (894)
T COG2909 347 KELHRAAAEWFAEHGLPSEAIDHALAAG-------DPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAE-LLASTPRLV 418 (894)
T ss_pred hHHHHHHHHHHHhCCChHHHHHHHHhCC-------CHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHH-HHhhCchHH
Confidence 3444555566666666666666544331 223333333333 2334444444444333200 000101111
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH-------HHHHHHHH-HHHhcCCHHHHHHHHHhchhhc---CCCCCHH
Q 015726 115 VHSIVLYGQANMIDHAMQTFEEMDKYGLRQSV-------DALNALLL-GCILSKNYEEVKRIFTEFPKVY---GIEPNSE 183 (401)
Q Consensus 115 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~ 183 (401)
-.-+=.....+++++|..++.++...-..|+. ..|+.+-. .....|++++|.++-+....+. ...+...
T Consensus 419 ll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~ 498 (894)
T COG2909 419 LLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIV 498 (894)
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhh
Confidence 11122234678899999988887553222221 13444422 2345688888888877665432 1223445
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHH-----HHHHccCChH--HHHHHHHHHHHc---CCC---C
Q 015726 184 TYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLL-----AGFYKEHKYE--DVGKVLQMMEKC---GIA---S 250 (401)
Q Consensus 184 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll-----~~~~~~~~~~--~a~~~~~~~~~~---~~~---~ 250 (401)
.+..+..+..-.|++++|..+..+..+..-.-+...+..+. ..+...|+.. +.+..+...... ..+ +
T Consensus 499 ~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f 578 (894)
T COG2909 499 ALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEF 578 (894)
T ss_pred hhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchh
Confidence 66677777788899999998887765542233443333222 2344556322 222333322211 001 1
Q ss_pred CchhHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCcCHHH--HHHHHHHHhcCCChHHHHHHHHHHHhCCCCC----CHh
Q 015726 251 GVNVYNIRIQSLCKL-KRSEEAKALLDGMLSRGIKPNLDT--YKHLIHGFGKEGNLEGAKKLFASMTNGGCEP----DSY 323 (401)
Q Consensus 251 ~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~p~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~----~~~ 323 (401)
-..++..++.++.+. +...++..-++-.......|-... +..|+......|+.++|...++++......+ +..
T Consensus 579 ~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~ 658 (894)
T COG2909 579 LVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYL 658 (894)
T ss_pred HHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHH
Confidence 123344445555441 112222222222222222222222 2366777888999999999888887543233 222
Q ss_pred hHHHHHH--HHHccCCHHHHHHHHHH
Q 015726 324 CFFMFTY--FLCQGGEYETALKVCRA 347 (401)
Q Consensus 324 ~~~~li~--~~~~~g~~~~a~~~~~~ 347 (401)
.-...+. .....|+.+.+.....+
T Consensus 659 a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 659 AAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 2222222 23457788777776655
No 324
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=86.98 E-value=0.37 Score=36.38 Aligned_cols=83 Identities=22% Similarity=0.192 Sum_probs=46.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCC
Q 015726 188 VIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKR 267 (401)
Q Consensus 188 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 267 (401)
++..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 34555556666777777777766554555666677777777776666666665511 11222345555555566
Q ss_pred HHHHHHHHHH
Q 015726 268 SEEAKALLDG 277 (401)
Q Consensus 268 ~~~a~~~~~~ 277 (401)
++++.-++.+
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 6555555544
No 325
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=86.84 E-value=2.1 Score=22.54 Aligned_cols=18 Identities=17% Similarity=0.237 Sum_probs=6.3
Q ss_pred HHHHhcCChHHHHHHHHH
Q 015726 119 VLYGQANMIDHAMQTFEE 136 (401)
Q Consensus 119 ~~~~~~~~~~~a~~~~~~ 136 (401)
..|...|++++|+..|++
T Consensus 9 ~~~~~~~~~~~A~~~~~~ 26 (34)
T PF00515_consen 9 NAYFQLGDYEEALEYYQR 26 (34)
T ss_dssp HHHHHTT-HHHHHHHHHH
T ss_pred HHHHHhCCchHHHHHHHH
Confidence 333333333333333333
No 326
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.53 E-value=2 Score=23.79 Aligned_cols=28 Identities=18% Similarity=0.255 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 015726 323 YCFFMFTYFLCQGGEYETALKVCRASMA 350 (401)
Q Consensus 323 ~~~~~li~~~~~~g~~~~a~~~~~~~~~ 350 (401)
.+++.+...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4567777777777888888877776654
No 327
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.27 E-value=15 Score=29.17 Aligned_cols=54 Identities=7% Similarity=-0.007 Sum_probs=23.7
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 015726 191 SFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKC 246 (401)
Q Consensus 191 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 246 (401)
.....|.+|.|+.+++.....+. .......-.+.+...|+.++|..-|+...+.
T Consensus 135 vq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 135 VQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 34444555555555544333211 1112223334455555555555555555444
No 328
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=86.13 E-value=20 Score=30.49 Aligned_cols=117 Identities=10% Similarity=0.077 Sum_probs=76.4
Q ss_pred CCHHHHHHHHHHHHH-CCCCcCHHHHHHHHHHHhc-CC-ChHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHccCCHHHH
Q 015726 266 KRSEEAKALLDGMLS-RGIKPNLDTYKHLIHGFGK-EG-NLEGAKKLFASMTNG-GCEPDSYCFFMFTYFLCQGGEYETA 341 (401)
Q Consensus 266 ~~~~~a~~~~~~~~~-~~~~p~~~~~~~li~~~~~-~~-~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a 341 (401)
..+.+|+++|+.... ..+--|..+...+++.... .+ ....-.++.+-+... |..++..+...++..++..+++.+-
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 345566666663322 1234466666666666654 22 233333444444433 4567777888888888888888888
Q ss_pred HHHHHHHHHC-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 015726 342 LKVCRASMAK-GWVPHFSTMKSLVTGLASISKVAEANELIGL 382 (401)
Q Consensus 342 ~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 382 (401)
.++|+.-... +...|...|..+++...+.|+..-..+++++
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 8888876665 4566788888888888888888766666554
No 329
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=86.09 E-value=20 Score=30.47 Aligned_cols=62 Identities=11% Similarity=0.057 Sum_probs=49.2
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 015726 324 CFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKR 386 (401)
Q Consensus 324 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 386 (401)
+++.....|..+|.+.+|.++.++....+ +.+...+-.++..+...||--.+.+-++.+.+.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~v 342 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEV 342 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHH
Confidence 34555677889999999999999888775 667788889999999999977777777766543
No 330
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=86.04 E-value=2.4 Score=22.16 Aligned_cols=17 Identities=29% Similarity=0.417 Sum_probs=6.0
Q ss_pred HHHhcCChHHHHHHHHH
Q 015726 120 LYGQANMIDHAMQTFEE 136 (401)
Q Consensus 120 ~~~~~~~~~~a~~~~~~ 136 (401)
.+...|++++|++.|++
T Consensus 10 ~~~~~~~~~~A~~~~~~ 26 (34)
T PF07719_consen 10 AYYQLGNYEEAIEYFEK 26 (34)
T ss_dssp HHHHTT-HHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHH
Confidence 33333333333333333
No 331
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=86.02 E-value=35 Score=33.17 Aligned_cols=196 Identities=11% Similarity=0.052 Sum_probs=113.6
Q ss_pred cHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCc--hhHHHHHHHHHH-hcCChHHHHHHHHHHhhCCCCCCHH---
Q 015726 74 DRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQN--ERFHVHSIVLYG-QANMIDHAMQTFEEMDKYGLRQSVD--- 147 (401)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~--- 147 (401)
+...|..+|.. |+..++.+......++. ..++..+...+. ...++++|+..+++.....-.++..
T Consensus 29 ~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k 99 (608)
T PF10345_consen 29 QLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLK 99 (608)
T ss_pred hHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHH
Confidence 55567777654 55566666544444442 344455556555 7889999999999875433222222
Q ss_pred --HHHHHHHHHHhcCCHHHHHHHHHhchhhcCC---CCCHHhHHHH-HHHHHhcCChhHHHHHHHHHHhCC---CCCCHH
Q 015726 148 --ALNALLLGCILSKNYEEVKRIFTEFPKVYGI---EPNSETYNKV-IKSFCESGDSSSVYSILAEMRRKS---IRPNAT 218 (401)
Q Consensus 148 --~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~ 218 (401)
.-..++..+.+.+... |...+++..+...- .+-...|..+ +..+...++...|.+.++.+.... ..|-..
T Consensus 100 ~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~ 178 (608)
T PF10345_consen 100 FRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVF 178 (608)
T ss_pred HHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHH
Confidence 2234556666666555 88888887654322 1222334444 333333479999999999886532 234444
Q ss_pred hHHHHHHHHH--ccCChHHHHHHHHHHHHcC---------CCCCchhHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 015726 219 DFGLLLAGFY--KEHKYEDVGKVLQMMEKCG---------IASGVNVYNIRIQSLC--KLKRSEEAKALLDGML 279 (401)
Q Consensus 219 ~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~---------~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~ 279 (401)
++..++.+.. +.+..+++.+.++.+.... -.|...+|..+++.++ ..|+++.+...++++.
T Consensus 179 v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 179 VLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555544 4455677777777663321 1234566777766654 4677666666655543
No 332
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.90 E-value=16 Score=29.06 Aligned_cols=88 Identities=13% Similarity=0.002 Sum_probs=45.5
Q ss_pred HHHhcCCChHHHHHHHHHHHhCCCCCCHhhHH-----HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 015726 295 HGFGKEGNLEGAKKLFASMTNGGCEPDSYCFF-----MFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLAS 369 (401)
Q Consensus 295 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-----~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 369 (401)
..+...|++++|..-++..... |....+. .|.+.....|.+++|...++.....++ .......-.+++..
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~ 171 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLA 171 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHH
Confidence 3455566666666666655532 2222222 233445556666666666665444332 22233334455666
Q ss_pred cCCHHHHHHHHHHHHhcC
Q 015726 370 ISKVAEANELIGLMKKRF 387 (401)
Q Consensus 370 ~g~~~~a~~~~~~~~~~~ 387 (401)
.|+-++|+.-|++..+.+
T Consensus 172 kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 172 KGDKQEARAAYEKALESD 189 (207)
T ss_pred cCchHHHHHHHHHHHHcc
Confidence 666666666666665553
No 333
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=85.51 E-value=0.78 Score=23.81 Aligned_cols=28 Identities=21% Similarity=0.455 Sum_probs=21.5
Q ss_pred CCHHHHHHHHHHHHhcCCCCcccchhcC
Q 015726 371 SKVAEANELIGLMKKRFPKSGDMWNAAL 398 (401)
Q Consensus 371 g~~~~a~~~~~~~~~~~~~~~~~~~~ll 398 (401)
|+.+.|..+|+++....|.+...|...+
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 5677888888888888887777776654
No 334
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.82 E-value=15 Score=34.65 Aligned_cols=97 Identities=13% Similarity=0.025 Sum_probs=52.8
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHH
Q 015726 229 KEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKK 308 (401)
Q Consensus 229 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~ 308 (401)
+.|+++.|.++..+. .+..-|..|.++....+++..|.+.|.+..+ |..|+-.+...|+.+....
T Consensus 649 ~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred hcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHH
Confidence 445555554443321 2455566666666666666666666655433 3344555555666655555
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHH
Q 015726 309 LFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCR 346 (401)
Q Consensus 309 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 346 (401)
+-....+.|. .|....+|...|+++++.+++.
T Consensus 714 la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 714 LASLAKKQGK------NNLAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred HHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHH
Confidence 5555555441 2233344555677777776654
No 335
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=84.63 E-value=11 Score=30.47 Aligned_cols=77 Identities=12% Similarity=0.160 Sum_probs=47.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcC--CCCCchhHHHHHHH
Q 015726 184 TYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCG--IASGVNVYNIRIQS 261 (401)
Q Consensus 184 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~ 261 (401)
|.+..++.+.+.+.+++++...++-.+.. +-|...-..+++.+|-.|++++|..-++-.-... ..+-..+|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34455666777777888887777766552 4455666677777888888888876666554431 12233455555543
No 336
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=84.47 E-value=1.6 Score=21.60 Aligned_cols=21 Identities=24% Similarity=0.276 Sum_probs=11.9
Q ss_pred HHHHHHHHccCCHHHHHHHHH
Q 015726 361 KSLVTGLASISKVAEANELIG 381 (401)
Q Consensus 361 ~~l~~~~~~~g~~~~a~~~~~ 381 (401)
..+..++...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 345555566666666665554
No 337
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.21 E-value=24 Score=29.66 Aligned_cols=27 Identities=11% Similarity=0.383 Sum_probs=15.4
Q ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHH
Q 015726 285 PNLDTYKHLIHGFGKEGNLEGAKKLFAS 312 (401)
Q Consensus 285 p~~~~~~~li~~~~~~~~~~~a~~~~~~ 312 (401)
|.....+.|+.+|. .+++.+-.+++..
T Consensus 302 PEIlAMTnlv~aYQ-~NdI~eFE~Il~~ 328 (440)
T KOG1464|consen 302 PEILAMTNLVAAYQ-NNDIIEFERILKS 328 (440)
T ss_pred HHHHHHHHHHHHHh-cccHHHHHHHHHh
Confidence 34455677777774 4455555555543
No 338
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=84.21 E-value=6.6 Score=31.44 Aligned_cols=35 Identities=17% Similarity=0.319 Sum_probs=24.2
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Q 015726 354 VPHFSTMKSLVTGLASISKVAEANELIGLMKKRFP 388 (401)
Q Consensus 354 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 388 (401)
.|++.+|..++.++...|+.++|.+...++...+|
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 56666777667777777777777777777666666
No 339
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=84.12 E-value=19 Score=30.45 Aligned_cols=88 Identities=6% Similarity=0.156 Sum_probs=56.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHhchh-hcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHH--
Q 015726 151 ALLLGCILSKNYEEVKRIFTEFPK-VYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGF-- 227 (401)
Q Consensus 151 ~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-- 227 (401)
.=|.+++..++|.+++...-+.-+ ...++|. ....-|-.|.+.+.+..+.++-.......-.-+...|..+...|
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpk--IleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPK--ILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLL 165 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHH--HHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHH
Confidence 347889999999988776544422 1123443 34444556788899988888887776543222344466666554
Q ss_pred ---HccCChHHHHHHH
Q 015726 228 ---YKEHKYEDVGKVL 240 (401)
Q Consensus 228 ---~~~~~~~~a~~~~ 240 (401)
.=.|.+++|+++.
T Consensus 166 ~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHhccccHHHHHHHH
Confidence 4568888888776
No 340
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=83.93 E-value=2.8 Score=38.93 Aligned_cols=99 Identities=17% Similarity=0.014 Sum_probs=76.3
Q ss_pred hcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 015726 298 GKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEAN 377 (401)
Q Consensus 298 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 377 (401)
...|+...|...+.........-.......+.....+.|....|..++....... ...+-++..+.++|....++++|+
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHH
Confidence 3468888888888877654322233455667777788888889999988877765 455678888899999999999999
Q ss_pred HHHHHHHhcCCCCcccchhc
Q 015726 378 ELIGLMKKRFPKSGDMWNAA 397 (401)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~l 397 (401)
+.|++..++.+.+.+.-|.|
T Consensus 697 ~~~~~a~~~~~~~~~~~~~l 716 (886)
T KOG4507|consen 697 EAFRQALKLTTKCPECENSL 716 (886)
T ss_pred HHHHHHHhcCCCChhhHHHH
Confidence 99999999988887766654
No 341
>PRK09687 putative lyase; Provisional
Probab=83.41 E-value=28 Score=29.86 Aligned_cols=221 Identities=14% Similarity=0.094 Sum_probs=102.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCCh----hHHHHHHHHHHhCCCCCCHHh
Q 015726 144 QSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDS----SSVYSILAEMRRKSIRPNATD 219 (401)
Q Consensus 144 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~ 219 (401)
++..+....+..+...|..+ +...+..+.+ .+|...-...+.++.+.|+. +++...+..+... .++..+
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~-~~~~l~~ll~----~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~V 107 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQD-VFRLAIELCS----SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACV 107 (280)
T ss_pred CCHHHHHHHHHHHHhcCcch-HHHHHHHHHh----CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHH
Confidence 44445555555555555432 2222333322 33444444445555555542 3455555554222 334444
Q ss_pred HHHHHHHHHccCCh-----HHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 015726 220 FGLLLAGFYKEHKY-----EDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLI 294 (401)
Q Consensus 220 ~~~ll~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li 294 (401)
-...+.++...+.. ..+...+..... .++..+-...+.++.+.++ +++...+-.+.+. +|...-...+
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~ 180 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAA 180 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHH
Confidence 44444444443321 112222222222 2244455555666666655 3344444444432 2333444444
Q ss_pred HHHhcCC-ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 015726 295 HGFGKEG-NLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKV 373 (401)
Q Consensus 295 ~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 373 (401)
.++.+.+ +...+...+..+.. .++..+-...+.++.+.|+. .+...+-+..+.+ + .....+.++...|+.
T Consensus 181 ~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~ 251 (280)
T PRK09687 181 FALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK 251 (280)
T ss_pred HHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH
Confidence 4444432 23345555555553 34555666666666666663 4444444444432 1 233556666666664
Q ss_pred HHHHHHHHHHHhcCC
Q 015726 374 AEANELIGLMKKRFP 388 (401)
Q Consensus 374 ~~a~~~~~~~~~~~~ 388 (401)
+|...+..+.+.++
T Consensus 252 -~a~p~L~~l~~~~~ 265 (280)
T PRK09687 252 -TLLPVLDTLLYKFD 265 (280)
T ss_pred -hHHHHHHHHHhhCC
Confidence 56666666665444
No 342
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=83.39 E-value=3.8 Score=21.44 Aligned_cols=28 Identities=21% Similarity=0.379 Sum_probs=20.3
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 015726 324 CFFMFTYFLCQGGEYETALKVCRASMAK 351 (401)
Q Consensus 324 ~~~~li~~~~~~g~~~~a~~~~~~~~~~ 351 (401)
+|..+...|...|++++|.+.|++..+.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5666677777788888888888776653
No 343
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.34 E-value=33 Score=30.70 Aligned_cols=163 Identities=11% Similarity=0.080 Sum_probs=88.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhc--------CCCC
Q 015726 111 ERFHVHSIVLYGQANMIDHAMQTFEEMDKYG--LRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVY--------GIEP 180 (401)
Q Consensus 111 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~ 180 (401)
...+..+...|..+|+++.|++.|.+..+.- .+.....|..+|..-+-.|+|.....+..+..... .+++
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence 4566777888999999999999999965532 12234456666677777888887777766663210 1222
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC------CCCCHHhHHHHHHHHHccCChHHHHHH-----HHHHHHcCCC
Q 015726 181 NSETYNKVIKSFCESGDSSSVYSILAEMRRKS------IRPNATDFGLLLAGFYKEHKYEDVGKV-----LQMMEKCGIA 249 (401)
Q Consensus 181 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~ll~~~~~~~~~~~a~~~-----~~~~~~~~~~ 249 (401)
....+..+...+. ++++.|.+.|-...... +.|...+....+.+++--++-+--..+ |+.+.+.
T Consensus 230 kl~C~agLa~L~l--kkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel--- 304 (466)
T KOG0686|consen 230 KLKCAAGLANLLL--KKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLEL--- 304 (466)
T ss_pred chHHHHHHHHHHH--HHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhc---
Confidence 3333444443333 36777766664432211 233333333344444443333322222 2222222
Q ss_pred CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 015726 250 SGVNVYNIRIQSLCKLKRSEEAKALLDGMLSR 281 (401)
Q Consensus 250 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 281 (401)
....+.++...| .+++..+.++++++...
T Consensus 305 -~Pqlr~il~~fy--~sky~~cl~~L~~~k~~ 333 (466)
T KOG0686|consen 305 -EPQLREILFKFY--SSKYASCLELLREIKPR 333 (466)
T ss_pred -ChHHHHHHHHHh--hhhHHHHHHHHHHhccc
Confidence 223344444333 36788888888887654
No 344
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=83.11 E-value=2.5 Score=21.12 Aligned_cols=27 Identities=15% Similarity=0.048 Sum_probs=14.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhc
Q 015726 360 MKSLVTGLASISKVAEANELIGLMKKR 386 (401)
Q Consensus 360 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 386 (401)
+..+...+...|++++|...++...+.
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 344445555555555555555555443
No 345
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=83.00 E-value=3.6 Score=27.04 Aligned_cols=46 Identities=11% Similarity=-0.062 Sum_probs=19.6
Q ss_pred hCCCchHHHHHHHHhhhC-CCCCCchhHHHHHHHHHHhcCChHHHHH
Q 015726 87 QANHFNAISQLLEELKTR-PDLRQNERFHVHSIVLYGQANMIDHAMQ 132 (401)
Q Consensus 87 ~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~ 132 (401)
..++-++|+..|+..... ...+.-..++..++.+|+..|++.++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555444421 1111122334444555555555555444
No 346
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=82.90 E-value=3.2 Score=23.81 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=12.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh
Q 015726 188 VIKSFCESGDSSSVYSILAEMRR 210 (401)
Q Consensus 188 l~~~~~~~~~~~~a~~~~~~~~~ 210 (401)
+..+|...|+.+.|.++++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34455555555555555555544
No 347
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=82.87 E-value=2.3 Score=22.03 Aligned_cols=20 Identities=20% Similarity=0.260 Sum_probs=8.7
Q ss_pred HHHhcCCHHHHHHHHHhchh
Q 015726 155 GCILSKNYEEVKRIFTEFPK 174 (401)
Q Consensus 155 ~~~~~~~~~~a~~~~~~~~~ 174 (401)
++.+.|++++|.+.|+++.+
T Consensus 9 ~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 9 CYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHH
Confidence 33344444444444444433
No 348
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=82.49 E-value=25 Score=28.60 Aligned_cols=31 Identities=13% Similarity=0.322 Sum_probs=22.1
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 015726 322 SYCFFMFTYFLCQGGEYETALKVCRASMAKG 352 (401)
Q Consensus 322 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 352 (401)
..||.-+.+.+...|+.++|..+|+-.+..+
T Consensus 237 TEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 237 TETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 3577777777777777777777777666554
No 349
>PRK09687 putative lyase; Provisional
Probab=82.08 E-value=32 Score=29.54 Aligned_cols=136 Identities=14% Similarity=0.040 Sum_probs=66.9
Q ss_pred CHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 015726 216 NATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLK-RSEEAKALLDGMLSRGIKPNLDTYKHLI 294 (401)
Q Consensus 216 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~li 294 (401)
+..+-...+.++.+.++ ..+...+-.+.+. ++..+-...+.++.+.+ +...+...+..+.. .+|...-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 44444455555555554 3344444444432 23344444555555432 13344444444443 23555555566
Q ss_pred HHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 015726 295 HGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGL 367 (401)
Q Consensus 295 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 367 (401)
.++.+.|+ ..+...+-...+.+ + .....+.++...|.. +|...+..+.+. .+|..+-...+.++
T Consensus 214 ~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 214 IGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred HHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 66666665 34444444444432 1 233556666666664 566666666653 24555555555444
No 350
>PRK11619 lytic murein transglycosylase; Provisional
Probab=81.99 E-value=54 Score=32.11 Aligned_cols=326 Identities=8% Similarity=0.011 Sum_probs=179.3
Q ss_pred hhHHHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHH
Q 015726 38 IKEKKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHS 117 (401)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 117 (401)
....+..+.+.+.... +..+..+...+...| .. .-..|..+...+ ....+++...++++ .++.|.....-...
T Consensus 33 ~r~~f~~A~~a~~~g~-~~~~~~~~~~l~d~p-L~-~yl~y~~L~~~l-~~~~~~ev~~Fl~~---~~~~P~~~~Lr~~~ 105 (644)
T PRK11619 33 QRQRYQQIKQAWDNRQ-MDVVEQLMPTLKDYP-LY-PYLEYRQLTQDL-MNQPAVQVTNFIRA---NPTLPPARSLQSRF 105 (644)
T ss_pred HHHHHHHHHHHHHCCC-HHHHHHHHHhccCCC-cH-hHHHHHHHHhcc-ccCCHHHHHHHHHH---CCCCchHHHHHHHH
Confidence 4566777777776655 777777766653322 21 122333333222 23345555555554 56666656666677
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCC
Q 015726 118 IVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGD 197 (401)
Q Consensus 118 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 197 (401)
...+.+.+++...++.+..- +.+...-.....+....|+.++|......+-... ......++.++..+.+.|.
T Consensus 106 l~~La~~~~w~~~~~~~~~~-----p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g--~~~p~~cd~l~~~~~~~g~ 178 (644)
T PRK11619 106 VNELARREDWRGLLAFSPEK-----PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG--KSLPNACDKLFSVWQQSGK 178 (644)
T ss_pred HHHHHHccCHHHHHHhcCCC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--CCCChHHHHHHHHHHHcCC
Confidence 77778888888877733221 4566666777888888999887776666664332 3345678888888887776
Q ss_pred hhHHH--HHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHH---------cCCCCCchhHHHHHHHHH--h
Q 015726 198 SSSVY--SILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEK---------CGIASGVNVYNIRIQSLC--K 264 (401)
Q Consensus 198 ~~~a~--~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---------~~~~~~~~~~~~ll~~~~--~ 264 (401)
+.... +-++.+...| +...-..+...+. .+.....+.+..+.. ...+++...-..++.++. .
T Consensus 179 lt~~d~w~R~~~al~~~---~~~lA~~l~~~l~--~~~~~~a~a~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~Rla 253 (644)
T PRK11619 179 QDPLAYLERIRLAMKAG---NTGLVTYLAKQLP--ADYQTIASALIKLQNDPNTVETFARTTGPTDFTRQMAAVAFASVA 253 (644)
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHhcC--hhHHHHHHHHHHHHHCHHHHHHHhhccCCChhhHHHHHHHHHHHH
Confidence 54432 2222223222 2222222222110 000100011111100 111223222222222222 3
Q ss_pred cCCHHHHHHHHHHHHHCC-CCcCH--HHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHH
Q 015726 265 LKRSEEAKALLDGMLSRG-IKPNL--DTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETA 341 (401)
Q Consensus 265 ~~~~~~a~~~~~~~~~~~-~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 341 (401)
..+.+.|..++....... ..+.. ..+..+.......+...++...++..... ..+......-+..-...++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~--~~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR--SQSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc--cCCcHHHHHHHHHHHHccCHHHH
Confidence 456788999998875443 22222 23344433333332255666666654432 23444555556666688999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 015726 342 LKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKK 385 (401)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 385 (401)
...+..|-... .-...-..-+.+++...|+.++|...|+++..
T Consensus 332 ~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 332 NTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 88888875542 33555666778887788999999999998744
No 351
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=81.90 E-value=13 Score=29.18 Aligned_cols=75 Identities=23% Similarity=0.312 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC----C-------HHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcC
Q 015726 128 DHAMQTFEEMDKYGLRQSVDALNALLLGCILSK----N-------YEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESG 196 (401)
Q Consensus 128 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~-------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 196 (401)
++|..-|++.+... +....++..+..+|...+ + +++|.+.|++..+. .|+...|+.-+....
T Consensus 52 edAisK~eeAL~I~-P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~---~P~ne~Y~ksLe~~~--- 124 (186)
T PF06552_consen 52 EDAISKFEEALKIN-PNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE---DPNNELYRKSLEMAA--- 124 (186)
T ss_dssp HHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH----TT-HHHHHHHHHHH---
T ss_pred HHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc---CCCcHHHHHHHHHHH---
Confidence 34444444444432 222355555555554332 2 44455555555443 677777776666542
Q ss_pred ChhHHHHHHHHHHhCC
Q 015726 197 DSSSVYSILAEMRRKS 212 (401)
Q Consensus 197 ~~~~a~~~~~~~~~~~ 212 (401)
+|-++..++.+.+
T Consensus 125 ---kap~lh~e~~~~~ 137 (186)
T PF06552_consen 125 ---KAPELHMEIHKQG 137 (186)
T ss_dssp ---THHHHHHHHHHSS
T ss_pred ---hhHHHHHHHHHHH
Confidence 4555555555543
No 352
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.87 E-value=28 Score=28.70 Aligned_cols=29 Identities=3% Similarity=0.059 Sum_probs=18.8
Q ss_pred HHHHhcCCChHHHHHHHHHHHhCCCCCCH
Q 015726 294 IHGFGKEGNLEGAKKLFASMTNGGCEPDS 322 (401)
Q Consensus 294 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 322 (401)
...-...+++.+|.++|++.....+..+.
T Consensus 161 A~yaa~leqY~~Ai~iyeqva~~s~~n~L 189 (288)
T KOG1586|consen 161 AQYAAQLEQYSKAIDIYEQVARSSLDNNL 189 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence 33344567888888888887766444443
No 353
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=81.81 E-value=4.3 Score=24.43 Aligned_cols=28 Identities=14% Similarity=0.194 Sum_probs=15.5
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcCCCC
Q 015726 363 LVTGLASISKVAEANELIGLMKKRFPKS 390 (401)
Q Consensus 363 l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 390 (401)
+.-++.+.|++++|.+..+.+.+..|.|
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N 34 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPDN 34 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCc
Confidence 4445556666666666666666655554
No 354
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=81.39 E-value=15 Score=29.76 Aligned_cols=77 Identities=10% Similarity=-0.001 Sum_probs=56.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhC--CCCCCHhhHHHHHHH
Q 015726 254 VYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNG--GCEPDSYCFFMFTYF 331 (401)
Q Consensus 254 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~ 331 (401)
|.+..++.+.+.+.+.+++...++-.+.+ +-|..+-..+++.++-.|++++|..-++-.-+. ...+-..+|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 45566778888899999999988777763 225667778899999999999998777665543 123445667777765
No 355
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=81.34 E-value=16 Score=25.48 Aligned_cols=52 Identities=17% Similarity=0.191 Sum_probs=26.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCC
Q 015726 260 QSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGG 317 (401)
Q Consensus 260 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 317 (401)
..+...|++++|..+.+.+ +.||...|-+|... +.|..+++..-+.+|..+|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKL----CYPDLEPWLALCEW--RLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHccchHHHHHHhcCCC----CCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC
Confidence 3444555666665554433 35555555554442 4455555555555555444
No 356
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=81.26 E-value=25 Score=28.17 Aligned_cols=21 Identities=24% Similarity=0.248 Sum_probs=9.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 015726 261 SLCKLKRSEEAKALLDGMLSR 281 (401)
Q Consensus 261 ~~~~~~~~~~a~~~~~~~~~~ 281 (401)
+|.+...+++|+.-|+.+.+.
T Consensus 177 ayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 177 AYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHhhhhHHHHHHHHHHHHHh
Confidence 344444444444444444443
No 357
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=81.19 E-value=33 Score=29.15 Aligned_cols=25 Identities=24% Similarity=0.169 Sum_probs=18.8
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHh
Q 015726 361 KSLVTGLASISKVAEANELIGLMKK 385 (401)
Q Consensus 361 ~~l~~~~~~~g~~~~a~~~~~~~~~ 385 (401)
..++.++.+.|.+.+|+.+++.+..
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ 153 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLH 153 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4567778888888888887776544
No 358
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=81.10 E-value=21 Score=26.89 Aligned_cols=45 Identities=18% Similarity=0.222 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 015726 253 NVYNIRIQSLCKLKR-SEEAKALLDGMLSRGIKPNLDTYKHLIHGF 297 (401)
Q Consensus 253 ~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~p~~~~~~~li~~~ 297 (401)
..|.+++.+.++..- ---+..+|.-|++.+.+++..-|..+|.++
T Consensus 80 ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~ 125 (145)
T PF13762_consen 80 SSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAA 125 (145)
T ss_pred chHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 334444444433333 222344444444444444444444444444
No 359
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=80.97 E-value=36 Score=29.50 Aligned_cols=97 Identities=12% Similarity=0.121 Sum_probs=59.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCcCHHHHHHHHHH-HhcCCChHHHHHHHHHHHhCCCCCCH----h
Q 015726 253 NVYNIRIQSLCKLKRSEEAKALLDGMLSR----GIKPNLDTYKHLIHG-FGKEGNLEGAKKLFASMTNGGCEPDS----Y 323 (401)
Q Consensus 253 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~p~~~~~~~li~~-~~~~~~~~~a~~~~~~m~~~~~~~~~----~ 323 (401)
..+......||+.|+.+.|.+.+.+-.++ |.+.|+..+.+-+.. |....-+.+-.+..+.+.+.|...+. .
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 45666677888888888888877765543 667776655544333 33333445555666666666655443 3
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 015726 324 CFFMFTYFLCQGGEYETALKVCRASMAK 351 (401)
Q Consensus 324 ~~~~li~~~~~~g~~~~a~~~~~~~~~~ 351 (401)
+|..+- |....++.+|-.+|-+....
T Consensus 185 vY~Gly--~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 185 VYQGLY--CMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred HHHHHH--HHHHHhHHHHHHHHHHHccc
Confidence 343332 34556778888877665543
No 360
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=80.94 E-value=5 Score=23.02 Aligned_cols=22 Identities=18% Similarity=0.359 Sum_probs=9.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 015726 259 IQSLCKLKRSEEAKALLDGMLS 280 (401)
Q Consensus 259 l~~~~~~~~~~~a~~~~~~~~~ 280 (401)
..+|...|+.+.|..+++++..
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHHH
Confidence 3444444444444444444443
No 361
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=79.86 E-value=24 Score=26.72 Aligned_cols=50 Identities=18% Similarity=0.209 Sum_probs=25.6
Q ss_pred CCCchHHHHHHHHhh-hCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 015726 88 ANHFNAISQLLEELK-TRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKY 140 (401)
Q Consensus 88 ~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 140 (401)
.++++++..+++.+. -+|..+. ..++.. ..+...|++++|.++|+++.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e-~d~~dg--~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKE-LDMFDG--WLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccc-cchhHH--HHHHHcCCHHHHHHHHHhhhcc
Confidence 556666666666555 2333333 222222 2344556666666666666554
No 362
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.77 E-value=72 Score=32.21 Aligned_cols=26 Identities=8% Similarity=0.056 Sum_probs=15.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhchh
Q 015726 149 LNALLLGCILSKNYEEVKRIFTEFPK 174 (401)
Q Consensus 149 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 174 (401)
|..|+..|...|+.++|+++|.+..+
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhc
Confidence 45555566666666666666665543
No 363
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=79.20 E-value=40 Score=28.95 Aligned_cols=21 Identities=24% Similarity=0.221 Sum_probs=14.1
Q ss_pred HHhHHHHHHHHHccCChHHHH
Q 015726 217 ATDFGLLLAGFYKEHKYEDVG 237 (401)
Q Consensus 217 ~~~~~~ll~~~~~~~~~~~a~ 237 (401)
..+|..++.+++..|+.+..+
T Consensus 321 lK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHhhhHHHHHHhcCChHHHHH
Confidence 345777777787777766443
No 364
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=78.70 E-value=45 Score=29.18 Aligned_cols=131 Identities=8% Similarity=0.037 Sum_probs=71.5
Q ss_pred hHHHHHHHHHHHHcCC----CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHH
Q 015726 233 YEDVGKVLQMMEKCGI----ASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKK 308 (401)
Q Consensus 233 ~~~a~~~~~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~ 308 (401)
.+.+.+.|+.....+. ..+......++....+.|+.+.-..+++..... .+...-..++.+.+...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Confidence 4566677777766422 234455566667777777766655555555543 366777888888888888888888
Q ss_pred HHHHHHhCC-CCCCHhhHHHHHHHHHccC--CHHHHHHHHHH----HHHCCCCCCHHHHHHHHHHHHc
Q 015726 309 LFASMTNGG-CEPDSYCFFMFTYFLCQGG--EYETALKVCRA----SMAKGWVPHFSTMKSLVTGLAS 369 (401)
Q Consensus 309 ~~~~m~~~~-~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~----~~~~~~~~~~~~~~~l~~~~~~ 369 (401)
+++.....+ +.+.. . ..++.++...+ ..+.+.+++.. +.+ .+..+......++..+..
T Consensus 223 ~l~~~l~~~~v~~~d-~-~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~-~~~~~~~~~~~~~~~~~~ 287 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQD-I-RYVLAGLASSNPVGRDLAWEFFKENWDAIIK-KFGTNSSALSRVIKSFAG 287 (324)
T ss_dssp HHHHHHCTSTS-TTT-H-HHHHHHHH-CSTTCHHHHHHHHHHCHHHHHC-HC-TTSHCCHHHHHCCCT
T ss_pred HHHHHcCCcccccHH-H-HHHHHHHhcCChhhHHHHHHHHHHHHHHHHH-HhcCCChHHHHHHHHHhc
Confidence 888888754 33332 3 33344444233 23666666543 222 223332245555555443
No 365
>PRK10941 hypothetical protein; Provisional
Probab=78.60 E-value=38 Score=28.83 Aligned_cols=78 Identities=10% Similarity=-0.004 Sum_probs=48.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCHHhHHHHHHHH
Q 015726 149 LNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRK-SIRPNATDFGLLLAGF 227 (401)
Q Consensus 149 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~ 227 (401)
.+.+-.+|.+.++++.|+.+.+.+..-. +.+..-+.--.-.|.+.|.+..|..-++...+. .-.|+.......+...
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~--P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFD--PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 4455667777788888888877776431 333444555566677778888887777776544 2344455555555444
Q ss_pred H
Q 015726 228 Y 228 (401)
Q Consensus 228 ~ 228 (401)
.
T Consensus 262 ~ 262 (269)
T PRK10941 262 E 262 (269)
T ss_pred h
Confidence 3
No 366
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.73 E-value=9.5 Score=26.31 Aligned_cols=56 Identities=20% Similarity=0.010 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcccch
Q 015726 340 TALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSGDMWN 395 (401)
Q Consensus 340 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 395 (401)
..++.+++....+....+-....|--.|.+.|+.+.|.+-|+.=...+|.+.....
T Consensus 55 ~le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~fmD 110 (121)
T COG4259 55 ALEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVFMD 110 (121)
T ss_pred HHHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhHHH
Confidence 33444555555443333333444555566666666666666666555665544333
No 367
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=77.50 E-value=53 Score=29.41 Aligned_cols=57 Identities=14% Similarity=0.297 Sum_probs=33.6
Q ss_pred HHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH-ccCCHHHHHHHHHHHHH
Q 015726 294 IHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLC-QGGEYETALKVCRASMA 350 (401)
Q Consensus 294 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~-~~g~~~~a~~~~~~~~~ 350 (401)
|..+.+.|-+..|.++.+-+...+..-|+.....+|+.|+ +.++++-.+++.+....
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 4455666777777777776666543335555555555553 55666666666665443
No 368
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=77.09 E-value=22 Score=24.77 Aligned_cols=87 Identities=14% Similarity=0.114 Sum_probs=49.5
Q ss_pred ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHH
Q 015726 126 MIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSIL 205 (401)
Q Consensus 126 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 205 (401)
..++|..+-+.+...+ .....+--+-+..+...|++++|..+.+.+. .||...|-.+.. .+.|..+.+..-+
T Consensus 20 cHqEA~tIAdwL~~~~-~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~-----~pdlepw~ALce--~rlGl~s~l~~rl 91 (115)
T TIGR02508 20 CHQEANTIADWLHLKG-ESEEAVQLIRLSSLMNRGDYQSALQLGNKLC-----YPDLEPWLALCE--WRLGLGSALESRL 91 (115)
T ss_pred HHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHccchHHHHHHhcCCCC-----CchHHHHHHHHH--HhhccHHHHHHHH
Confidence 3456666666655433 1122222222345667788888877776663 677777765544 4556666666677
Q ss_pred HHHHhCCCCCCHHhHH
Q 015726 206 AEMRRKSIRPNATDFG 221 (401)
Q Consensus 206 ~~~~~~~~~~~~~~~~ 221 (401)
.+|...| .|....|.
T Consensus 92 ~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 92 NRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHhCC-CHHHHHHH
Confidence 7776665 34444443
No 369
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=76.94 E-value=28 Score=25.88 Aligned_cols=71 Identities=7% Similarity=0.112 Sum_probs=31.1
Q ss_pred CCHhhHHHHHHHHHccC---CHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC
Q 015726 320 PDSYCFFMFTYFLCQGG---EYETALKVCRASMAKG-WVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKS 390 (401)
Q Consensus 320 ~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 390 (401)
++..+-..+..++.+.. +..+.+.++++..+.. ..-.......|.-++.+.+++++++++++.+.+..|.|
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n 104 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNN 104 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCc
Confidence 33333334444444433 2334445555555421 11122223334444555555555555555555554443
No 370
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=76.69 E-value=7.6 Score=25.58 Aligned_cols=45 Identities=16% Similarity=0.156 Sum_probs=20.4
Q ss_pred hcCChHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHhcCCHHHHHH
Q 015726 123 QANMIDHAMQTFEEMDKYGLRQS--VDALNALLLGCILSKNYEEVKR 167 (401)
Q Consensus 123 ~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~ 167 (401)
..++.++|+..+....+.-..+. -.++..++.+|+..|.++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555544321111 2233444555555555555443
No 371
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=76.69 E-value=19 Score=26.24 Aligned_cols=47 Identities=11% Similarity=0.159 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 015726 200 SVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKC 246 (401)
Q Consensus 200 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 246 (401)
+..+-++.+....+.|+......-+++|.+.+|+..|.++|+-+..+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34444555555556666666666666666666666666666666543
No 372
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=76.39 E-value=88 Score=31.33 Aligned_cols=226 Identities=10% Similarity=0.003 Sum_probs=122.5
Q ss_pred HHhcCCHHHHHHHHHhchhhcCCCCCH-------HhHHHHHHH-HHhcCChhHHHHHHHHHHhC----CCCCCHHhHHHH
Q 015726 156 CILSKNYEEVKRIFTEFPKVYGIEPNS-------ETYNKVIKS-FCESGDSSSVYSILAEMRRK----SIRPNATDFGLL 223 (401)
Q Consensus 156 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l 223 (401)
.....++.+|..+..++....+ .|+. ..|+.+-.. ....|+++.|.++-+..... -..+....+..+
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~-~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLK-APMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhC-cCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 3456789999999988854432 2222 134433322 34568889999888877553 123345567777
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHH-----HHHHhcCC--HHHHHHHHHHHHHC--CCC----cCHHHH
Q 015726 224 LAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRI-----QSLCKLKR--SEEAKALLDGMLSR--GIK----PNLDTY 290 (401)
Q Consensus 224 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll-----~~~~~~~~--~~~a~~~~~~~~~~--~~~----p~~~~~ 290 (401)
..+..-.|++++|..+.....+..-.-+...+.... ..+...|+ +.+....|...... +-+ +-..++
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 888888999999998887775542223333332222 23445563 33333444433322 011 122344
Q ss_pred HHHHHHHhcC-CChHHHHHHHHHHHhCCCCCCHhhH--HHHHHHHHccCCHHHHHHHHHHHHHCCCCC----CHHHHHHH
Q 015726 291 KHLIHGFGKE-GNLEGAKKLFASMTNGGCEPDSYCF--FMFTYFLCQGGEYETALKVCRASMAKGWVP----HFSTMKSL 363 (401)
Q Consensus 291 ~~li~~~~~~-~~~~~a~~~~~~m~~~~~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~l 363 (401)
..+..++.+. +...++..-+..-......|-...+ ..++......|+.++|...++++......+ +...-...
T Consensus 584 ~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~ 663 (894)
T COG2909 584 AQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 4455555441 1112222222222222222222222 367788889999999999999887763322 22222223
Q ss_pred HHHH--HccCCHHHHHHHHHH
Q 015726 364 VTGL--ASISKVAEANELIGL 382 (401)
Q Consensus 364 ~~~~--~~~g~~~~a~~~~~~ 382 (401)
+... ...|+.+.+.....+
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHh
Confidence 3322 357888877766655
No 373
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=76.28 E-value=66 Score=29.85 Aligned_cols=84 Identities=10% Similarity=0.046 Sum_probs=57.7
Q ss_pred hhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHH
Q 015726 55 PFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTF 134 (401)
Q Consensus 55 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 134 (401)
+.+...+++.+..+ ++.|+..|...+.-|-+.+.+.+...+|.+|....+..++..++.+ .--|-...+++.|..+|
T Consensus 87 ~~rIv~lyr~at~r--f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA-~wefe~n~ni~saRalf 163 (568)
T KOG2396|consen 87 PNRIVFLYRRATNR--FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAA-KWEFEINLNIESARALF 163 (568)
T ss_pred HHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhh-hhHHhhccchHHHHHHH
Confidence 45666777777554 5668999999999998888899999999999844333332333322 22233444588888888
Q ss_pred HHHhhCC
Q 015726 135 EEMDKYG 141 (401)
Q Consensus 135 ~~~~~~~ 141 (401)
..-++.+
T Consensus 164 lrgLR~n 170 (568)
T KOG2396|consen 164 LRGLRFN 170 (568)
T ss_pred HHHhhcC
Confidence 8877754
No 374
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=76.28 E-value=48 Score=28.28 Aligned_cols=69 Identities=12% Similarity=0.156 Sum_probs=34.0
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCcCHHHHH-HHHHHHhcCCChHHHHHHHHHHHhCCCCC
Q 015726 252 VNVYNIRIQSLCKLKRSEEAKALLDGMLS----RGIKPNLDTYK-HLIHGFGKEGNLEGAKKLFASMTNGGCEP 320 (401)
Q Consensus 252 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~p~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 320 (401)
...+..+...|++.++.+.+.+...+..+ .|.+.|+...- .|.-.|....-.++-++..+.|.+.|...
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDW 188 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDW 188 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCH
Confidence 34555666666666666666555544433 34554443222 12222333333455556666666665433
No 375
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=75.54 E-value=49 Score=28.02 Aligned_cols=193 Identities=12% Similarity=0.037 Sum_probs=0.0
Q ss_pred HhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCCCHHhHHHHHHHHHccCC
Q 015726 157 ILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRK----SIRPNATDFGLLLAGFYKEHK 232 (401)
Q Consensus 157 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~ll~~~~~~~~ 232 (401)
.+++++++|++++..- ...+.+.|+...|.++-.-+.+. +.+.|......++..+...+.
T Consensus 1 v~~kky~eAidLL~~G----------------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~ 64 (260)
T PF04190_consen 1 VKQKKYDEAIDLLYSG----------------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPP 64 (260)
T ss_dssp HHTT-HHHHHHHHHHH----------------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-T
T ss_pred CccccHHHHHHHHHHH----------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Q ss_pred hH-HHHHHHHHHHHcCCC------CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHH
Q 015726 233 YE-DVGKVLQMMEKCGIA------SGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEG 305 (401)
Q Consensus 233 ~~-~a~~~~~~~~~~~~~------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~ 305 (401)
-+ +-.++.+.+.+.. . -+......+...|.+.|++.+|+..|-.-.+. +...+..++......|...+
T Consensus 65 ~~p~r~~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~----~~~~~~~ll~~~~~~~~~~e 139 (260)
T PF04190_consen 65 EEPERKKFIKAAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDP----SAFAYVMLLEEWSTKGYPSE 139 (260)
T ss_dssp T-TTHHHHHHHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HH----HHHHHHHHHHHHHHHTSS--
T ss_pred CcchHHHHHHHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCCh----hHHHHHHHHHHHHHhcCCcc
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHC----------------CCCCCHHHHHHHHHHHHc
Q 015726 306 AKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAK----------------GWVPHFSTMKSLVTGLAS 369 (401)
Q Consensus 306 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----------------~~~~~~~~~~~l~~~~~~ 369 (401)
+ .......+--|...++...|...++...+. --.|-......|+.+|-+
T Consensus 140 ~---------------dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~ 204 (260)
T PF04190_consen 140 A---------------DLFIARAVLQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCER 204 (260)
T ss_dssp H---------------HHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHH
T ss_pred h---------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhc
Q ss_pred cCCHHHHHHHHHHHHhcCCCC
Q 015726 370 ISKVAEANELIGLMKKRFPKS 390 (401)
Q Consensus 370 ~g~~~~a~~~~~~~~~~~~~~ 390 (401)
. +..+|..+.+++.+.
T Consensus 205 ~-----~~~~F~~L~~~Y~~~ 220 (260)
T PF04190_consen 205 D-----NLPLFKKLCEKYKPS 220 (260)
T ss_dssp T------HHHHHHHHHHTHH-
T ss_pred C-----cHHHHHHHHHHhCcc
No 376
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=75.25 E-value=8.2 Score=24.13 Aligned_cols=22 Identities=18% Similarity=0.292 Sum_probs=10.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHH
Q 015726 187 KVIKSFCESGDSSSVYSILAEM 208 (401)
Q Consensus 187 ~l~~~~~~~~~~~~a~~~~~~~ 208 (401)
.++.++...|++++|.++++++
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3444555555555555554444
No 377
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=73.68 E-value=95 Score=30.45 Aligned_cols=182 Identities=14% Similarity=0.161 Sum_probs=86.1
Q ss_pred HHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHh-hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 015726 94 ISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMD-KYGLRQSVDALNALLLGCILSKNYEEVKRIFTEF 172 (401)
Q Consensus 94 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 172 (401)
.+...+.+.+...++.....-..+-..|...|++++|+.+--..- ...+.++...+..++.-|... -.+.+.+.++.-
T Consensus 42 ~l~~IE~lyed~~F~er~~AaL~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~-yi~~~~~~~~~~ 120 (929)
T KOG2062|consen 42 SLPKIESLYEDETFPERQLAALLASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDM-YIETASETYKNP 120 (929)
T ss_pred hHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHH-HHHHHHHHhcCc
Confidence 344444444444444322222333356777888888877644432 333455555555555444322 123344444432
Q ss_pred hhhcCCCCCH-HhHHHHHHHHHhcCChhHHHHH---------HHHH-HhCCCCCCHHhHHHHHHHHHccCC-hHHHHHHH
Q 015726 173 PKVYGIEPNS-ETYNKVIKSFCESGDSSSVYSI---------LAEM-RRKSIRPNATDFGLLLAGFYKEHK-YEDVGKVL 240 (401)
Q Consensus 173 ~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~---------~~~~-~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~ 240 (401)
.+..++.+-. ...+-++..|...+++..|+.+ +++. .+... +......++..+..... .+--.+++
T Consensus 121 ~~~~~iD~rL~~iv~rmi~kcl~d~e~~~aiGia~E~~rld~ie~Ail~~d~--~~~~~~yll~l~~s~v~~~efR~~vl 198 (929)
T KOG2062|consen 121 EQKSPIDQRLRDIVERMIQKCLDDNEYKQAIGIAFETRRLDIIEEAILKSDS--VIGNLTYLLELLISLVNNREFRNKVL 198 (929)
T ss_pred cccCCCCHHHHHHHHHHHHHhhhhhHHHHHHhHHhhhhhHHHHHHHhccccc--cchHHHHHHHHHHHHHhhHHHHHHHH
Confidence 1111222221 1344555556555565554443 2221 11111 12223333333332222 23333444
Q ss_pred HHHHHc---CCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 015726 241 QMMEKC---GIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSR 281 (401)
Q Consensus 241 ~~~~~~---~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 281 (401)
+.+.+. ...|| |-.+.++|.-..+.+.+.++++++.+.
T Consensus 199 r~lv~~y~~~~~PD---y~~vc~c~v~Ldd~~~va~ll~kL~~e 239 (929)
T KOG2062|consen 199 RLLVKTYLKLPSPD---YFSVCQCYVFLDDAEAVADLLEKLVKE 239 (929)
T ss_pred HHHHHHHccCCCCC---eeeeeeeeEEcCCHHHHHHHHHHHHhc
Confidence 444332 22343 556778888888889999998888875
No 378
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=73.16 E-value=70 Score=28.69 Aligned_cols=121 Identities=12% Similarity=0.071 Sum_probs=80.9
Q ss_pred HHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhh---h---CCC--------------
Q 015726 47 ARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELK---T---RPD-------------- 106 (401)
Q Consensus 47 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~---~~~-------------- 106 (401)
.......|++....++.. .| + -..++-.+-..+...|+.+.|.++++... . .+.
T Consensus 18 ~~~v~~~Dp~~l~~ll~~---~P-y--HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~r 91 (360)
T PF04910_consen 18 YAAVQSHDPNALINLLQK---NP-Y--HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCR 91 (360)
T ss_pred HHHHHccCHHHHHHHHHH---CC-C--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccc
Confidence 334444588888888744 22 2 35578888899999999999888887764 0 011
Q ss_pred ----CCCchhHHHHH---HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHhch
Q 015726 107 ----LRQNERFHVHS---IVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCI-LSKNYEEVKRIFTEFP 173 (401)
Q Consensus 107 ----~~~~~~~~~~l---i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~ 173 (401)
.+.|..+|.++ |....+.|.+..|+++.+-+...+..-|+......|+.|+ +.++++--+++.+...
T Consensus 92 L~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 92 LDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred cCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 22355556555 4456788888888888888887764446665556666554 6677777777777653
No 379
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=72.67 E-value=82 Score=29.28 Aligned_cols=245 Identities=9% Similarity=0.095 Sum_probs=138.5
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC------CHHHHHHHHHhchhhcCCCCC-HHhHHHHHHHHHhcCChhH
Q 015726 128 DHAMQTFEEMDKYGLRQSVDALNALLLGCILSK------NYEEVKRIFTEFPKVYGIEPN-SETYNKVIKSFCESGDSSS 200 (401)
Q Consensus 128 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ 200 (401)
+....+|++..+. .|+...|+..|..|...- .+.....+|+...+..+..++ ...|..+...++..+..
T Consensus 299 s~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~-- 374 (568)
T KOG2396|consen 299 SRCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEA-- 374 (568)
T ss_pred HHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchH--
Confidence 4445677776654 567777777777765432 345556666666544444444 33455555555555433
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHccC-ChHHH-HHHHHHHHHcCCCCCchhHHHHHHHHHhcCC-HHH-HH-HHH
Q 015726 201 VYSILAEMRRKSIRPNATDFGLLLAGFYKEH-KYEDV-GKVLQMMEKCGIASGVNVYNIRIQSLCKLKR-SEE-AK-ALL 275 (401)
Q Consensus 201 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a-~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~-a~-~~~ 275 (401)
.+.-..+...++..|...|..-+....+.. +..-. ...+......-..+....|+... .|+ ... .. .++
T Consensus 375 -r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii 448 (568)
T KOG2396|consen 375 -REVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLII 448 (568)
T ss_pred -hHHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHH
Confidence 333333333344556666665555544221 22211 12222333321222223333333 122 111 11 122
Q ss_pred HHHHHCCCCcCHHHH-HHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH--ccCCHHHHHHHHHHHHHC-
Q 015726 276 DGMLSRGIKPNLDTY-KHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLC--QGGEYETALKVCRASMAK- 351 (401)
Q Consensus 276 ~~~~~~~~~p~~~~~-~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~--~~g~~~~a~~~~~~~~~~- 351 (401)
...... ..|+..++ +.++..+.+.|-..+|..++..+.... +|+...|..+|..=. ..-+...+.++++.|...
T Consensus 449 ~a~~s~-~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~f 526 (568)
T KOG2396|consen 449 SALLSV-IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCNLANIREYYDRALREF 526 (568)
T ss_pred HHHHHh-cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHh
Confidence 222222 34555554 567788888999999999999988763 567777877776421 223377888888887766
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 015726 352 GWVPHFSTMKSLVTGLASISKVAEANELIGLMKKR 386 (401)
Q Consensus 352 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 386 (401)
| .|+..|.-.+.--...|..+.+-.++.+..+.
T Consensus 527 g--~d~~lw~~y~~~e~~~g~~en~~~~~~ra~kt 559 (568)
T KOG2396|consen 527 G--ADSDLWMDYMKEELPLGRPENCGQIYWRAMKT 559 (568)
T ss_pred C--CChHHHHHHHHhhccCCCcccccHHHHHHHHh
Confidence 5 67888888777777889988888887776655
No 380
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=72.66 E-value=11 Score=23.58 Aligned_cols=27 Identities=30% Similarity=0.394 Sum_probs=14.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHh
Q 015726 359 TMKSLVTGLASISKVAEANELIGLMKK 385 (401)
Q Consensus 359 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 385 (401)
---.++.+|...|++++|.++++++.+
T Consensus 25 NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 25 NHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334455566666666666666665544
No 381
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=71.87 E-value=12 Score=32.06 Aligned_cols=42 Identities=14% Similarity=0.298 Sum_probs=30.4
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHH
Q 015726 108 RQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDAL 149 (401)
Q Consensus 108 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 149 (401)
+.....|+..|....+.|++++|++++++..+.|+.--..+|
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 444667778888888888888888888888888865444444
No 382
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=71.83 E-value=64 Score=27.67 Aligned_cols=70 Identities=13% Similarity=-0.041 Sum_probs=51.3
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHC-----CCCCCHHH
Q 015726 289 TYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAK-----GWVPHFST 359 (401)
Q Consensus 289 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~ 359 (401)
+++.....|..+|.+.+|.++.+..+..+ +.+...+..++..+...|+--.+.+-++++.+. |+..+-..
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsi 355 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSI 355 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhH
Confidence 34556678889999999999998888764 457778888889999999877777776665443 55544443
No 383
>PRK10941 hypothetical protein; Provisional
Probab=71.30 E-value=40 Score=28.71 Aligned_cols=75 Identities=13% Similarity=0.050 Sum_probs=43.2
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHccCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHH
Q 015726 291 KHLIHGFGKEGNLEGAKKLFASMTNGGCEPD-SYCFFMFTYFLCQGGEYETALKVCRASMAKG-WVPHFSTMKSLVTGL 367 (401)
Q Consensus 291 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~ 367 (401)
+.+-.+|.+.++++.|+.+.+.+... .|+ ..-+.--.-.|.+.|.+..|..=++..++.- -.|+.......+...
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l--~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQF--DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 44455566777777777777777664 343 3334444555667777777777666665542 234444444444444
No 384
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=71.07 E-value=1.9e+02 Score=32.83 Aligned_cols=152 Identities=13% Similarity=0.117 Sum_probs=89.3
Q ss_pred HHHHHHHhCCCchHHHHHHHHhhhCC-CCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 015726 80 IAVSKLSQANHFNAISQLLEELKTRP-DLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCIL 158 (401)
Q Consensus 80 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 158 (401)
.+..+--+.+.+.+|...++.-.... ........+..+...|+.-+++|.+.-+...-.. .|+ .+. .|.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s--l~~-qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS--LYQ-QILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc--HHH-HHHHHHh
Confidence 34445567788888888888732111 1111133444455588888888888877764211 222 222 3334456
Q ss_pred cCCHHHHHHHHHhchhhcCCCCC-HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHH-HHHHHHHccCChHHH
Q 015726 159 SKNYEEVKRIFTEFPKVYGIEPN-SETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFG-LLLAGFYKEHKYEDV 236 (401)
Q Consensus 159 ~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~ll~~~~~~~~~~~a 236 (401)
.|++..|...|+.+.+. .|+ ..+++-++......|.++.+....+-.... ..+....++ .-+.+--+.++++..
T Consensus 1462 ~g~~~da~~Cye~~~q~---~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~ 1537 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQK---DPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLL 1537 (2382)
T ss_pred hccHHHHHHHHHHhhcC---CCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhh
Confidence 78888888888888744 454 667777777777777777777765555433 122222222 233444677777776
Q ss_pred HHHHH
Q 015726 237 GKVLQ 241 (401)
Q Consensus 237 ~~~~~ 241 (401)
...+.
T Consensus 1538 e~~l~ 1542 (2382)
T KOG0890|consen 1538 ESYLS 1542 (2382)
T ss_pred hhhhh
Confidence 66555
No 385
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=69.97 E-value=67 Score=27.15 Aligned_cols=185 Identities=15% Similarity=0.177 Sum_probs=113.4
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHhchhhc--CC--CCCHHhHHHHHHHHHhc
Q 015726 123 QANMIDHAMQTFEEMDKYGLRQSVD---ALNALLLGCILSKNYEEVKRIFTEFPKVY--GI--EPNSETYNKVIKSFCES 195 (401)
Q Consensus 123 ~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~ 195 (401)
+...+++|+.-|++..+..-....+ +..-++..+.+.+++++....|.++..-. .+ ..+..+.|.++......
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 4457889999999887753233333 33446778888999999988888875311 11 22345677777777766
Q ss_pred CChhHHHHHHHHHHh----CC-CCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcC----CC-------CCchhHHHHH
Q 015726 196 GDSSSVYSILAEMRR----KS-IRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCG----IA-------SGVNVYNIRI 259 (401)
Q Consensus 196 ~~~~~a~~~~~~~~~----~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~-------~~~~~~~~ll 259 (401)
.+.+-..+.|+.-.+ .. -..--.|-..+...|...+++.+..++++++...- .. .-...|..=|
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 677666666654322 11 01111233456777888888888888888875421 01 1134567777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCC-CCcCHHHHHHHHHHH-----hcCCChHHHHH
Q 015726 260 QSLCKLKRSEEAKALLDGMLSRG-IKPNLDTYKHLIHGF-----GKEGNLEGAKK 308 (401)
Q Consensus 260 ~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~li~~~-----~~~~~~~~a~~ 308 (401)
+.|...++-.....++++...-. --|.+..... |+-| .+.|++++|..
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGv-IRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGV-IRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhH-HHHcCCccccccchHHHHHh
Confidence 88888888888888887665432 3345444443 3333 35677777754
No 386
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=69.34 E-value=33 Score=29.96 Aligned_cols=55 Identities=11% Similarity=0.006 Sum_probs=35.4
Q ss_pred HHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 015726 154 LGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRR 210 (401)
Q Consensus 154 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 210 (401)
+-|.++|.+++|++.|..-.... +.|.+++..-..+|.+...+..|..-.+....
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~--P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia 159 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVY--PHNPVYHINRALAYLKQKSFAQAEEDCEAAIA 159 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccC--CCCccchhhHHHHHHHHHHHHHHHHhHHHHHH
Confidence 44667777777777777665331 23666777777777777777766665555443
No 387
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=68.62 E-value=29 Score=27.72 Aligned_cols=31 Identities=23% Similarity=0.399 Sum_probs=14.6
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 015726 179 EPNSETYNKVIKSFCESGDSSSVYSILAEMR 209 (401)
Q Consensus 179 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 209 (401)
.|+...+..++..+...|+.++|.++..++.
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444444444444444444444444443
No 388
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.54 E-value=1.4e+02 Score=30.31 Aligned_cols=116 Identities=13% Similarity=0.102 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCC---CCCCHHHHHHHHHHHHhcCCH--HHHHHHHHhchhhc---CCC--C--
Q 015726 113 FHVHSIVLYGQANMIDHAMQTFEEMDKYG---LRQSVDALNALLLGCILSKNY--EEVKRIFTEFPKVY---GIE--P-- 180 (401)
Q Consensus 113 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~---~~~--~-- 180 (401)
-|..|+..|...|+.++|+++|.+..+.. -..-..-+..++.-+.+.+.. +-+++.-+...+.. |++ .
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 36667777777777777777777765521 011111222233333333332 33333333322110 000 0
Q ss_pred CH---HhH-HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 015726 181 NS---ETY-NKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFY 228 (401)
Q Consensus 181 ~~---~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 228 (401)
|. .+. ..-+-.|+.....+-+..+++.+....-..+....+.++..|+
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 00 000 0123345666777778888888766544455555666665554
No 389
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=68.36 E-value=33 Score=25.96 Aligned_cols=60 Identities=13% Similarity=0.149 Sum_probs=28.2
Q ss_pred HHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCC
Q 015726 241 QMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEG 301 (401)
Q Consensus 241 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~ 301 (401)
+.+.+.|+..+.. -..++..+...++.-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 10 ~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 10 ERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3344444443322 34455555555555555555555555554444444333344444433
No 390
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=67.88 E-value=59 Score=25.70 Aligned_cols=49 Identities=12% Similarity=0.219 Sum_probs=25.2
Q ss_pred HHHHHHHHHhchhhcCCCCCH-Hh-----HHHHHHHHHhcCChhHHHHHHHHHHh
Q 015726 162 YEEVKRIFTEFPKVYGIEPNS-ET-----YNKVIKSFCESGDSSSVYSILAEMRR 210 (401)
Q Consensus 162 ~~~a~~~~~~~~~~~~~~~~~-~~-----~~~l~~~~~~~~~~~~a~~~~~~~~~ 210 (401)
.+.|+.+|+.+.++...+-+. .. --..+..|.+.|.+++|.+++++..+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 456777776665443211000 01 11233456667777777777777654
No 391
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=67.54 E-value=96 Score=28.01 Aligned_cols=24 Identities=13% Similarity=0.095 Sum_probs=11.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhc
Q 015726 149 LNALLLGCILSKNYEEVKRIFTEF 172 (401)
Q Consensus 149 ~~~l~~~~~~~~~~~~a~~~~~~~ 172 (401)
+.-+...|...|+++.|++.|.+.
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~ 176 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRA 176 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhh
Confidence 334444455555555555555543
No 392
>PHA02875 ankyrin repeat protein; Provisional
Probab=67.36 E-value=1e+02 Score=28.18 Aligned_cols=18 Identities=11% Similarity=0.265 Sum_probs=9.4
Q ss_pred HHHHHhcCCHHHHHHHHH
Q 015726 153 LLGCILSKNYEEVKRIFT 170 (401)
Q Consensus 153 ~~~~~~~~~~~~a~~~~~ 170 (401)
+...+..|+.+.+..+++
T Consensus 72 L~~A~~~g~~~~v~~Ll~ 89 (413)
T PHA02875 72 LHDAVEEGDVKAVEELLD 89 (413)
T ss_pred HHHHHHCCCHHHHHHHHH
Confidence 334445566665555554
No 393
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=66.23 E-value=93 Score=27.37 Aligned_cols=78 Identities=13% Similarity=0.033 Sum_probs=45.3
Q ss_pred hHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHH
Q 015726 92 NAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCIL---SKNYEEVKRI 168 (401)
Q Consensus 92 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~ 168 (401)
+.-+.++++.... .+.+.......+..+.+..+.+...+.++++.... +.+...|...++.... .-.++...++
T Consensus 48 E~klsilerAL~~--np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 48 ERKLSILERALKH--NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 3445566665533 23446666677777777777777777777777653 3356666666655443 1234455555
Q ss_pred HHhc
Q 015726 169 FTEF 172 (401)
Q Consensus 169 ~~~~ 172 (401)
|.+.
T Consensus 125 y~~~ 128 (321)
T PF08424_consen 125 YEKC 128 (321)
T ss_pred HHHH
Confidence 5444
No 394
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=65.78 E-value=33 Score=28.75 Aligned_cols=58 Identities=12% Similarity=0.032 Sum_probs=36.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHh----CC-CCCCHHhHHHHHHHHHccCChHHHHHHHHHH
Q 015726 186 NKVIKSFCESGDSSSVYSILAEMRR----KS-IRPNATDFGLLLAGFYKEHKYEDVGKVLQMM 243 (401)
Q Consensus 186 ~~l~~~~~~~~~~~~a~~~~~~~~~----~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 243 (401)
--+...|.+.|++++|.++|+.+.. .| ..+...+...+..++.+.|+.+....+--++
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3456667777777777777777632 22 2334455666667777777777766655444
No 395
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.52 E-value=1.5e+02 Score=29.40 Aligned_cols=157 Identities=8% Similarity=0.045 Sum_probs=92.2
Q ss_pred HHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhc
Q 015726 45 TIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQA 124 (401)
Q Consensus 45 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 124 (401)
-+.-+...+.+++|++..+..............+...|..+...|++++|-...-.|.... ..-|...+..+...
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~-----~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNN-----AAEWELWVFKFAEL 436 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcch-----HHHHHHHHHHhccc
Confidence 3455667778889988877754332221245578888999999999999999888876221 34566666666666
Q ss_pred CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchh--------------hc-CCCCCHHhHHHHH
Q 015726 125 NMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPK--------------VY-GIEPNSETYNKVI 189 (401)
Q Consensus 125 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------------~~-~~~~~~~~~~~l~ 189 (401)
++......+ +.......+...|..++..+.. .+...-.++..+.+. +. ....+...-..|+
T Consensus 437 ~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La 512 (846)
T KOG2066|consen 437 DQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLA 512 (846)
T ss_pred cccchhhcc---CCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHH
Confidence 655443332 2322222355667777666665 333332222222210 00 0011222334578
Q ss_pred HHHHhcCChhHHHHHHHHHHh
Q 015726 190 KSFCESGDSSSVYSILAEMRR 210 (401)
Q Consensus 190 ~~~~~~~~~~~a~~~~~~~~~ 210 (401)
..|...+++..|++++-.+.+
T Consensus 513 ~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 513 HLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHHccChHHHHHHHHhccC
Confidence 888889999999988877643
No 396
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=65.37 E-value=19 Score=30.85 Aligned_cols=29 Identities=17% Similarity=0.092 Sum_probs=14.3
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 015726 326 FMFTYFLCQGGEYETALKVCRASMAKGWV 354 (401)
Q Consensus 326 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 354 (401)
+..|..-.+.||+++|+++++++.+.|+.
T Consensus 261 ~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 261 NQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 34444445555555555555555544443
No 397
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=65.28 E-value=25 Score=20.55 Aligned_cols=33 Identities=18% Similarity=0.194 Sum_probs=18.7
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 015726 193 CESGDSSSVYSILAEMRRKSIRPNATDFGLLLA 225 (401)
Q Consensus 193 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 225 (401)
.+.|-.+++...+++|.+.|+..+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 345555566666666666665555555555443
No 398
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=64.97 E-value=89 Score=26.73 Aligned_cols=198 Identities=18% Similarity=0.162 Sum_probs=89.3
Q ss_pred HHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHh-------HHHHHHHHHhcCChhHHHHHHHHHH----hCCCCCCHHhH
Q 015726 152 LLLGCILSKNYEEVKRIFTEFPKVYGIEPNSET-------YNKVIKSFCESGDSSSVYSILAEMR----RKSIRPNATDF 220 (401)
Q Consensus 152 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~ 220 (401)
+.+-..+.+++++|+..+.++... |+..|..+ ..-+...|...|+....-+.....+ +-.-+......
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~k-g~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kii 87 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGK-GVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKII 87 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcC-CCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHH
Confidence 445556677777777777777654 55555443 3345566666776665555443322 11112223344
Q ss_pred HHHHHHHHcc-CChHHHHHHHHHHHHcCCCCCch-----hHHHHHHHHHhcCCHHHHHHHHHHH----HHCCCCcCHHHH
Q 015726 221 GLLLAGFYKE-HKYEDVGKVLQMMEKCGIASGVN-----VYNIRIQSLCKLKRSEEAKALLDGM----LSRGIKPNLDTY 290 (401)
Q Consensus 221 ~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~-----~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~p~~~~~ 290 (401)
.+++..+-.. ..++..+.+.....+........ .-.-++..+.+.|.+.+|..+...+ .+..-+|+..+.
T Consensus 88 rtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~v 167 (421)
T COG5159 88 RTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITV 167 (421)
T ss_pred HHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeeh
Confidence 4445444322 23444444444443322111111 1123455566666666666554433 333334443333
Q ss_pred HHH-HHHHhcCCChHHHHHHHHHHHhC----CCCCCHhhHHHHHHHH--HccCCHHHHHHHHHHHHH
Q 015726 291 KHL-IHGFGKEGNLEGAKKLFASMTNG----GCEPDSYCFFMFTYFL--CQGGEYETALKVCRASMA 350 (401)
Q Consensus 291 ~~l-i~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~~~li~~~--~~~g~~~~a~~~~~~~~~ 350 (401)
..+ -..|...++..++..-+...+.. -++|....-.-++++. |...++..|..+|-+..+
T Consensus 168 hllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 168 HLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred hhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHh
Confidence 222 22344444444444444333311 1222222222233332 333455556665555444
No 399
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=64.83 E-value=12 Score=23.64 Aligned_cols=51 Identities=12% Similarity=0.071 Sum_probs=33.5
Q ss_pred CCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 015726 319 EPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASI 370 (401)
Q Consensus 319 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 370 (401)
.|....++.++..+++..-.+.++..+.++...|. .+..+|..-++.+++.
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLARE 55 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 35556677777777777777777777777777763 4566666666666554
No 400
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=64.79 E-value=87 Score=26.52 Aligned_cols=31 Identities=10% Similarity=0.114 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHhhhCCCC
Q 015726 77 AFSIAVSKLSQANHFNAISQLLEELKTRPDL 107 (401)
Q Consensus 77 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 107 (401)
....++..+.+.+....|..+.+.+...+.+
T Consensus 84 ~L~~iL~~lL~~~~~~~a~~i~~~y~~l~~F 114 (258)
T PF07064_consen 84 FLHHILRHLLRRNLDEEALEIASKYRSLPYF 114 (258)
T ss_pred chHHHHHHHHhcCCcHHHHHHHHHhccCCCc
Confidence 4666778888888888888888887654433
No 401
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=64.37 E-value=55 Score=27.45 Aligned_cols=61 Identities=16% Similarity=0.072 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHhh----CC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 015726 112 RFHVHSIVLYGQANMIDHAMQTFEEMDK----YG-LRQSVDALNALLLGCILSKNYEEVKRIFTEF 172 (401)
Q Consensus 112 ~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 172 (401)
.....+..-|.+.|++++|.++|+.+.. .| ..+...+...+..++.+.|+.+..+.+--++
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3445666778888888888888887742 23 2344556666777888888888777665444
No 402
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=64.36 E-value=99 Score=27.02 Aligned_cols=136 Identities=12% Similarity=0.070 Sum_probs=77.1
Q ss_pred CCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHh----CCCCCCH
Q 015726 248 IASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSR-GIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTN----GGCEPDS 322 (401)
Q Consensus 248 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~~~~ 322 (401)
+..|...++.|..+ +..++++-.+..+...+. |-.--...+......|++.|+.+.|++.++.-.+ .|.+.|.
T Consensus 66 i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDV 143 (393)
T KOG0687|consen 66 IKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDV 143 (393)
T ss_pred eeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhh
Confidence 44455555555443 222344444444444443 2221235566777889999999999988876553 4777776
Q ss_pred hhHHHHHHH-HHccCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 015726 323 YCFFMFTYF-LCQGGEYETALKVCRASMAKGWVPHF----STMKSLVTGLASISKVAEANELIGLMKKRF 387 (401)
Q Consensus 323 ~~~~~li~~-~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 387 (401)
..+.+-+.. |....-+.+-.+..+.+.+.|-..+. .+|..+- |....++.+|-.+|-+....|
T Consensus 144 vf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 144 VFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDSVSTF 211 (393)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHcccc
Confidence 655443333 33444445555555566666654443 3343332 234567888888877766554
No 403
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=64.23 E-value=58 Score=24.30 Aligned_cols=67 Identities=7% Similarity=-0.029 Sum_probs=44.5
Q ss_pred cHhHHHHHHHHHHhCCC---chHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 015726 74 DRMAFSIAVSKLSQANH---FNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKY 140 (401)
Q Consensus 74 ~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 140 (401)
+..+-..+..++.++.+ ..+.+.+++.+...............+..+|.+.++++.++++.+.+.+.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 44555555666666654 55577788888742222223445556677788999999999999888876
No 404
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=62.43 E-value=29 Score=20.28 Aligned_cols=30 Identities=13% Similarity=0.203 Sum_probs=13.5
Q ss_pred cCCChHHHHHHHHHHHhCCCCCCHhhHHHH
Q 015726 299 KEGNLEGAKKLFASMTNGGCEPDSYCFFMF 328 (401)
Q Consensus 299 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 328 (401)
+.|-..++..++++|.+.|+..+...|..+
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~ 43 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEI 43 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHH
Confidence 334444444444444444444444444433
No 405
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.68 E-value=1.8e+02 Score=29.23 Aligned_cols=57 Identities=12% Similarity=0.131 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHh
Q 015726 40 EKKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEEL 101 (401)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 101 (401)
..-+.+...+-..|+++.|+++.+.. |. . -..++..-.+.+.+.+++..|.+++-++
T Consensus 359 dE~R~vWk~yLd~g~y~kAL~~ar~~---p~-~-le~Vl~~qAdf~f~~k~y~~AA~~yA~t 415 (911)
T KOG2034|consen 359 DEARDVWKTYLDKGEFDKALEIARTR---PD-A-LETVLLKQADFLFQDKEYLRAAEIYAET 415 (911)
T ss_pred cchHHHHHHHHhcchHHHHHHhccCC---HH-H-HHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 35677789999999999999987653 11 0 1124555566777778888888887766
No 406
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=61.40 E-value=82 Score=25.13 Aligned_cols=172 Identities=8% Similarity=-0.017 Sum_probs=99.5
Q ss_pred CCCCCCHHhHHHHHHHHHccC----ChHHHHHHHHHHHHcCCCCCch----hHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 015726 211 KSIRPNATDFGLLLAGFYKEH----KYEDVGKVLQMMEKCGIASGVN----VYNIRIQSLCKLKRSEEAKALLDGMLSRG 282 (401)
Q Consensus 211 ~~~~~~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 282 (401)
.|..++...++.++..+.+.. +++.+..+=.+....++.++.. ....-+..|-+.||+.+.-.+|-.....-
T Consensus 2 AGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~~gc 81 (233)
T PF14669_consen 2 AGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVKMGC 81 (233)
T ss_pred CcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHHhhc
Confidence 467788888998888776543 4555555555555555554432 23333456677788888777776654432
Q ss_pred CCcCH-HHHH-HHHHHHhcCC--ChHHHHHHHHHHHhCCCCCCH-------hhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 015726 283 IKPNL-DTYK-HLIHGFGKEG--NLEGAKKLFASMTNGGCEPDS-------YCFFMFTYFLCQGGEYETALKVCRASMAK 351 (401)
Q Consensus 283 ~~p~~-~~~~-~li~~~~~~~--~~~~a~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 351 (401)
-+++. ..+. .+..++.+.- +..--.-.|.+....+.+-|. .+=.+++..|-+.-++.+..++++.|.+.
T Consensus 82 e~~~dlq~~~~~va~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~LGRiGiS~m~~Yhk~~qW~KGrkvLd~l~el 161 (233)
T PF14669_consen 82 EKFADLQRFCACVAEALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLLGRIGISLMYSYHKTLQWSKGRKVLDKLHEL 161 (233)
T ss_pred CCHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22221 1111 1111111111 111112233333332222222 12235667788889999999999988775
Q ss_pred C--------------CCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 015726 352 G--------------WVPHFSTMKSLVTGLASISKVAEANELIGL 382 (401)
Q Consensus 352 ~--------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 382 (401)
. ..+.-...+.-...+.+.|.++.|..++++
T Consensus 162 ~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 162 QIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred hhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 2 233455678888899999999999999884
No 407
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=61.11 E-value=57 Score=23.15 Aligned_cols=30 Identities=17% Similarity=0.264 Sum_probs=12.3
Q ss_pred CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 015726 284 KPNLDTYKHLIHGFGKEGNLEGAKKLFASMTN 315 (401)
Q Consensus 284 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 315 (401)
.||...|-+|-. .+.|-.+++...+.++..
T Consensus 68 ~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 68 YPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred CccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 344444444333 244444444444444443
No 408
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=60.90 E-value=51 Score=22.58 Aligned_cols=19 Identities=11% Similarity=0.017 Sum_probs=8.9
Q ss_pred HHccCCHHHHHHHHHHHHh
Q 015726 367 LASISKVAEANELIGLMKK 385 (401)
Q Consensus 367 ~~~~g~~~~a~~~~~~~~~ 385 (401)
....|++++|.+.+++.++
T Consensus 51 ~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 51 HRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHhCCHHHHHHHHHHHHH
Confidence 3344555555555444443
No 409
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=60.35 E-value=72 Score=24.13 Aligned_cols=83 Identities=8% Similarity=0.069 Sum_probs=51.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CcCHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhCCCCCCHhhHHH
Q 015726 254 VYNIRIQSLCKLKRSEEAKALLDGMLSRGI-----KPNLDTYKHLIHGFGKEGN-LEGAKKLFASMTNGGCEPDSYCFFM 327 (401)
Q Consensus 254 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~p~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~ 327 (401)
..|.++.-....++......+++.+..... ..+..+|.+++.+..+..- ---+..+|+-|.+.+.+++..-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 345666666666667766666666632210 1244567777777755554 3345667777777667777777777
Q ss_pred HHHHHHccC
Q 015726 328 FTYFLCQGG 336 (401)
Q Consensus 328 li~~~~~~g 336 (401)
+|.++.+..
T Consensus 121 li~~~l~g~ 129 (145)
T PF13762_consen 121 LIKAALRGY 129 (145)
T ss_pred HHHHHHcCC
Confidence 777776553
No 410
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=60.27 E-value=57 Score=23.96 Aligned_cols=43 Identities=9% Similarity=0.172 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHH
Q 015726 128 DHAMQTFEEMDKYGLRQSVD-ALNALLLGCILSKNYEEVKRIFT 170 (401)
Q Consensus 128 ~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~ 170 (401)
++..++|..|.+.|+-.... .|......+-..|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34667888888877655433 34555666677888888888875
No 411
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=60.12 E-value=66 Score=23.62 Aligned_cols=43 Identities=9% Similarity=0.054 Sum_probs=26.0
Q ss_pred HHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHh
Q 015726 129 HAMQTFEEMDKYGLRQS-VDALNALLLGCILSKNYEEVKRIFTE 171 (401)
Q Consensus 129 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~ 171 (401)
.+.++|..|...|+... ...|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 66677777766654433 44455556666666777777776653
No 412
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=60.08 E-value=52 Score=24.89 Aligned_cols=63 Identities=10% Similarity=0.136 Sum_probs=35.6
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccC
Q 015726 273 ALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGG 336 (401)
Q Consensus 273 ~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 336 (401)
++.+.+.+.|++++.. -..++..+.+.++.-.|.++++++.+.+...+..|.-.-+..+...|
T Consensus 7 ~~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 7 DAIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3445555666654432 33455555666666777777777777665555444444445555444
No 413
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=59.84 E-value=1e+02 Score=29.88 Aligned_cols=90 Identities=13% Similarity=0.069 Sum_probs=55.0
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcC--CCCCchhHHHHHHHHHhcCCHHH------HHHHHHHHHHCCCCcCHHHHHHH
Q 015726 222 LLLAGFYKEHKYEDVGKVLQMMEKCG--IASGVNVYNIRIQSLCKLKRSEE------AKALLDGMLSRGIKPNLDTYKHL 293 (401)
Q Consensus 222 ~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~------a~~~~~~~~~~~~~p~~~~~~~l 293 (401)
.++.+|...|++..+.++++.+...+ -+.-...+|..|....+.|.++- +.+.++... +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 78888888888888888888886543 22223567777888888886542 333333333 44477777777
Q ss_pred HHHHhcCCChHHHHHHHHHHH
Q 015726 294 IHGFGKEGNLEGAKKLFASMT 314 (401)
Q Consensus 294 i~~~~~~~~~~~a~~~~~~m~ 314 (401)
+.+-..-..-....-++.+.+
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHH
Confidence 776554333333334444444
No 414
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=59.81 E-value=74 Score=27.50 Aligned_cols=58 Identities=17% Similarity=0.338 Sum_probs=42.7
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc
Q 015726 272 KALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQ 334 (401)
Q Consensus 272 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 334 (401)
.++++.+...++.|.-..|..+.-.+.+.=.+...+.+|+.+... +.-|..++..|+.
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcs 320 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCS 320 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHH
Confidence 467778888888888888877777777777888888888888753 2236666666653
No 415
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=59.70 E-value=86 Score=24.77 Aligned_cols=110 Identities=16% Similarity=0.106 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHhhCCCCCCHHHHHHHHHHH---HhcCC-------HHHHHHHHHhchhhcCCCCCH-HhHHHHHHHHHhc
Q 015726 127 IDHAMQTFEEMDKYGLRQSVDALNALLLGC---ILSKN-------YEEVKRIFTEFPKVYGIEPNS-ETYNKVIKSFCES 195 (401)
Q Consensus 127 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~-------~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~ 195 (401)
|+.|.+.++.-...+ +.|...++.-..++ +...+ +++|+.-|++.. .+.|+. .++..+..+|...
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL---~I~P~~hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEAL---KINPNKHDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHH---HH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHH---hcCCchHHHHHHHHHHHHHH
Confidence 455666666544443 44555444333332 22333 334444444444 236664 4566666665543
Q ss_pred C----C-------hhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCC
Q 015726 196 G----D-------SSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGI 248 (401)
Q Consensus 196 ~----~-------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 248 (401)
+ + +++|.+.|++... ..|+..+|..-+.... +|-++..++.+.+.
T Consensus 83 A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~------kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 83 AFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAA------KAPELHMEIHKQGL 138 (186)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHH------THHHHHHHHHHSSS
T ss_pred HhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHH------hhHHHHHHHHHHHh
Confidence 2 2 3445555555544 3688888887777653 35566666666543
No 416
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=59.56 E-value=1.1e+02 Score=26.15 Aligned_cols=83 Identities=11% Similarity=0.058 Sum_probs=39.2
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHh----
Q 015726 123 QANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCI----LSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCE---- 194 (401)
Q Consensus 123 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 194 (401)
..+++..+...+......+. ......+...|. ...+...|.++|....+ .-.......|...|..
T Consensus 53 ~~~~~~~a~~~~~~a~~~~~---~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~----~g~~~a~~~lg~~~~~G~gv 125 (292)
T COG0790 53 YPPDYAKALKSYEKAAELGD---AAALALLGQMYGAGKGVSRDKTKAADWYRCAAA----DGLAEALFNLGLMYANGRGV 125 (292)
T ss_pred ccccHHHHHHHHHHhhhcCC---hHHHHHHHHHHHhccCccccHHHHHHHHHHHhh----cccHHHHHhHHHHHhcCCCc
Confidence 45667777777777665431 122333333332 22345566666664432 1222233334333333
Q ss_pred cCChhHHHHHHHHHHhCC
Q 015726 195 SGDSSSVYSILAEMRRKS 212 (401)
Q Consensus 195 ~~~~~~a~~~~~~~~~~~ 212 (401)
..+..+|.++|++..+.|
T Consensus 126 ~~d~~~A~~~~~~Aa~~g 143 (292)
T COG0790 126 PLDLVKALKYYEKAAKLG 143 (292)
T ss_pred ccCHHHHHHHHHHHHHcC
Confidence 225555555555555554
No 417
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=57.83 E-value=14 Score=27.23 Aligned_cols=20 Identities=30% Similarity=0.443 Sum_probs=9.3
Q ss_pred ChHHHHHHHHHHHhCCCCCC
Q 015726 302 NLEGAKKLFASMTNGGCEPD 321 (401)
Q Consensus 302 ~~~~a~~~~~~m~~~~~~~~ 321 (401)
.-..|..+|..|++.|-+||
T Consensus 110 sk~DaY~VF~kML~~G~pPd 129 (140)
T PF11663_consen 110 SKTDAYAVFRKMLERGNPPD 129 (140)
T ss_pred cCCcHHHHHHHHHhCCCCCc
Confidence 33444445555555544444
No 418
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=57.81 E-value=1.1e+02 Score=25.25 Aligned_cols=18 Identities=11% Similarity=0.215 Sum_probs=8.0
Q ss_pred HHHhcCChHHHHHHHHHH
Q 015726 120 LYGQANMIDHAMQTFEEM 137 (401)
Q Consensus 120 ~~~~~~~~~~a~~~~~~~ 137 (401)
.....|+++.|.+....+
T Consensus 73 ~~I~~G~Ie~Aie~in~l 90 (228)
T KOG2659|consen 73 RAIEEGQIEEAIEKVNQL 90 (228)
T ss_pred HHHHhccHHHHHHHHHHh
Confidence 334444444444444443
No 419
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=56.94 E-value=34 Score=32.88 Aligned_cols=170 Identities=12% Similarity=0.074 Sum_probs=0.0
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHH
Q 015726 181 NSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQ 260 (401)
Q Consensus 181 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 260 (401)
+...|..-+..+...++.. ...++.+..+-...+......++..|.+.|-.+.+..+.+.+-.+ .....-|..-+.
T Consensus 371 ~~~lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~--~~~~~~~g~AL~ 446 (566)
T PF07575_consen 371 HHSLWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQR--LLKEGRYGEALS 446 (566)
T ss_dssp -TTTHHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--HHHCCCHHHHHH
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHH
Q 015726 261 SLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYET 340 (401)
Q Consensus 261 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 340 (401)
.+.++|+...+..+-+.+.+.....+......++.......-....+..+....+ ..-..+.|++.+
T Consensus 447 ~~~ra~d~~~v~~i~~~ll~~~~~~~~~~~~~ll~~i~~~~~~~~~L~fla~yre-------------F~~~~~~~~~~~ 513 (566)
T PF07575_consen 447 WFIRAGDYSLVTRIADRLLEEYCNNGEPLDDDLLDNIGSPMLLSQRLSFLAKYRE-------------FYELYDEGDFRE 513 (566)
T ss_dssp HHH-----------------------------------------------------------------------------
T ss_pred HHHHCCCHHHHHHHHHHHHHHHhcCCCcccHHHHHHhcchhhhhhhhHHHHHHHH-------------HHHHHhhhhHHH
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 015726 341 ALKVCRASMAKGWVPHFSTMKSLVTGL 367 (401)
Q Consensus 341 a~~~~~~~~~~~~~~~~~~~~~l~~~~ 367 (401)
|.+.+-.+.+.+..|...-...|.++.
T Consensus 514 Aa~~Lv~Ll~~~~~Pk~f~~~LL~d~l 540 (566)
T PF07575_consen 514 AASLLVSLLKSPIAPKSFWPLLLCDAL 540 (566)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHCCCCCcHHHHHHHHHHHH
No 420
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=56.74 E-value=73 Score=30.29 Aligned_cols=87 Identities=16% Similarity=0.025 Sum_probs=57.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHH
Q 015726 265 LKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKV 344 (401)
Q Consensus 265 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 344 (401)
.|+...|...+.........-..+....|.....+.|....|..++.+.+... ...+.++-.+.+++....+++.|++.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHH
Confidence 46777777776655543221122333445555556677777887777766543 33455777788888888999999999
Q ss_pred HHHHHHCC
Q 015726 345 CRASMAKG 352 (401)
Q Consensus 345 ~~~~~~~~ 352 (401)
|+.+.+..
T Consensus 699 ~~~a~~~~ 706 (886)
T KOG4507|consen 699 FRQALKLT 706 (886)
T ss_pred HHHHHhcC
Confidence 98888764
No 421
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=56.61 E-value=12 Score=27.61 Aligned_cols=32 Identities=22% Similarity=0.284 Sum_probs=25.1
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 015726 334 QGGEYETALKVCRASMAKGWVPHFSTMKSLVTGL 367 (401)
Q Consensus 334 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 367 (401)
..|.-..|..+|++|++.|-+|| .|+.|+...
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 45666778999999999998877 677777654
No 422
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=56.41 E-value=78 Score=30.60 Aligned_cols=90 Identities=11% Similarity=-0.005 Sum_probs=54.7
Q ss_pred HHHHHHHhCCCchHHHHHHHHhhhCCC-CCCchhHHHHHHHHHHhcCChH------HHHHHHHHHhhCCCCCCHHHHHHH
Q 015726 80 IAVSKLSQANHFNAISQLLEELKTRPD-LRQNERFHVHSIVLYGQANMID------HAMQTFEEMDKYGLRQSVDALNAL 152 (401)
Q Consensus 80 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~l 152 (401)
+++.+|...|++..+.++++.+...+. ...-...++.-|+.+.+.|.|+ .|.+++++.. +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 788999999999999999998883221 1111345666777777888764 3334444433 45577777777
Q ss_pred HHHHHhcCCHHHHHHHHHhc
Q 015726 153 LLGCILSKNYEEVKRIFTEF 172 (401)
Q Consensus 153 ~~~~~~~~~~~~a~~~~~~~ 172 (401)
+.+....-+-....-++.++
T Consensus 110 ~~~sln~t~~~l~~pvl~~~ 129 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHEL 129 (1117)
T ss_pred HHhhcChHhHHhccHHHHHH
Confidence 66655433333333334333
No 423
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=55.79 E-value=1.4e+02 Score=26.12 Aligned_cols=58 Identities=17% Similarity=0.008 Sum_probs=30.4
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhCCCCCCHh---hHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 015726 292 HLIHGFGKEGNLEGAKKLFASMTNGGCEPDSY---CFFMFTYFLCQGGEYETALKVCRASMAK 351 (401)
Q Consensus 292 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~~~~~ 351 (401)
.|..+-.+.|+..+|.+.++++.+. .|-.. .-..++.+|....-+.+...++.+.-+.
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYDdi 340 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDI 340 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3444445567777777777666543 22111 1234566666665555555555544433
No 424
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=55.69 E-value=64 Score=22.08 Aligned_cols=20 Identities=20% Similarity=0.069 Sum_probs=10.3
Q ss_pred HHHhcCCHHHHHHHHHhchh
Q 015726 155 GCILSKNYEEVKRIFTEFPK 174 (401)
Q Consensus 155 ~~~~~~~~~~a~~~~~~~~~ 174 (401)
.....|++++|.+.+++.++
T Consensus 50 ~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 50 LHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHhCCHHHHHHHHHHHHH
Confidence 34445555555555555543
No 425
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=55.53 E-value=1.6e+02 Score=26.66 Aligned_cols=56 Identities=14% Similarity=0.231 Sum_probs=36.2
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCCch--hHHHHHHHHHh--cCCHHHHHHHHHHHHHC
Q 015726 225 AGFYKEHKYEDVGKVLQMMEKCGIASGVN--VYNIRIQSLCK--LKRSEEAKALLDGMLSR 281 (401)
Q Consensus 225 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~--~~~~~~a~~~~~~~~~~ 281 (401)
..+.+.+++..|.++++.+... ++++.. .+..+..+|.. .-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445778888888888888776 444443 34444444433 45677888888776654
No 426
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=54.99 E-value=1.1e+02 Score=24.37 Aligned_cols=66 Identities=9% Similarity=0.225 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHhhCCCCCCH--H-----HHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcC
Q 015726 127 IDHAMQTFEEMDKYGLRQSV--D-----ALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESG 196 (401)
Q Consensus 127 ~~~a~~~~~~~~~~~~~~~~--~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 196 (401)
.+.|+.+|+.+.+.--.|.. . .-...+..|.+.|.+++|.+++++... .|+......-+....+.+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~----d~~~~~~r~kL~~II~~K 157 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS----DPESQKLRMKLLMIIREK 157 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc----CCCchhHHHHHHHHHHcc
Confidence 67888899888765322211 1 112344578999999999999999964 455555454444444443
No 427
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=54.91 E-value=1.4e+02 Score=25.70 Aligned_cols=100 Identities=12% Similarity=0.099 Sum_probs=63.1
Q ss_pred CHHHHHHHHHHHhcCCChHHHHHHHHHHHh----CCCCCCHhhHH-HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH--
Q 015726 286 NLDTYKHLIHGFGKEGNLEGAKKLFASMTN----GGCEPDSYCFF-MFTYFLCQGGEYETALKVCRASMAKGWVPHFS-- 358 (401)
Q Consensus 286 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~~~~~~~~-~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-- 358 (401)
-...+..+...|++.++.+.+.++.++..+ .|.+.|...-. .+.-.|....-+++-.+..+.|.++|-..+..
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNR 193 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhh
Confidence 456778889999999999999988776553 46666653222 22233444445677788888888887554432
Q ss_pred --HHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 015726 359 --TMKSLVTGLASISKVAEANELIGLMKKRF 387 (401)
Q Consensus 359 --~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 387 (401)
+|.-+. +....++.+|-.++.+....+
T Consensus 194 yK~Y~Gi~--~m~~RnFkeAa~Ll~d~l~tF 222 (412)
T COG5187 194 YKVYKGIF--KMMRRNFKEAAILLSDILPTF 222 (412)
T ss_pred HHHHHHHH--HHHHHhhHHHHHHHHHHhccc
Confidence 332222 123456777777777665554
No 428
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=54.90 E-value=1.3e+02 Score=26.65 Aligned_cols=65 Identities=17% Similarity=0.171 Sum_probs=37.4
Q ss_pred HHHHHHHHhh-hCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 015726 93 AISQLLEELK-TRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCI 157 (401)
Q Consensus 93 ~a~~~~~~~~-~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 157 (401)
++..+++.+. .-|+..--..+|-.++......|.+++++.+|++.+..|..|-...-.++++.+-
T Consensus 121 ei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 121 EILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 4555666554 2233222345566666666666666677777777666666665555555555543
No 429
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=53.89 E-value=1.6e+02 Score=25.98 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=17.2
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCC
Q 015726 329 TYFLCQGGEYETALKVCRASMAKGW 353 (401)
Q Consensus 329 i~~~~~~g~~~~a~~~~~~~~~~~~ 353 (401)
...+.+.|..+.|..+++-+++.++
T Consensus 161 ~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 161 CRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHCCchHHHHHHHHHHHHHHc
Confidence 3345567788888888877777654
No 430
>PHA02875 ankyrin repeat protein; Provisional
Probab=53.88 E-value=1.8e+02 Score=26.59 Aligned_cols=217 Identities=9% Similarity=-0.027 Sum_probs=100.2
Q ss_pred HHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcC
Q 015726 46 IARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQAN 125 (401)
Q Consensus 46 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 125 (401)
+......|+.+-+..+++. ...++.. +. .....+..++..|+.+-+.-+++.-. .+.... .. ....+...+..|
T Consensus 6 L~~A~~~g~~~iv~~Ll~~-g~~~n~~-~~-~g~tpL~~A~~~~~~~~v~~Ll~~ga-~~~~~~-~~-~~t~L~~A~~~g 79 (413)
T PHA02875 6 LCDAILFGELDIARRLLDI-GINPNFE-IY-DGISPIKLAMKFRDSEAIKLLMKHGA-IPDVKY-PD-IESELHDAVEEG 79 (413)
T ss_pred HHHHHHhCCHHHHHHHHHC-CCCCCcc-CC-CCCCHHHHHHHcCCHHHHHHHHhCCC-CccccC-CC-cccHHHHHHHCC
Confidence 3344445666555555442 2232222 11 23345566677888765554444321 111110 11 123455566778
Q ss_pred ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHh--HHHHHHHHHhcCChhHHHH
Q 015726 126 MIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSET--YNKVIKSFCESGDSSSVYS 203 (401)
Q Consensus 126 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~ 203 (401)
+.+.+..+++.-....-..+.. -...+...+..|+.+-+..+++. |..|+... -.+.+...+..|+.+.+..
T Consensus 80 ~~~~v~~Ll~~~~~~~~~~~~~-g~tpL~~A~~~~~~~iv~~Ll~~-----gad~~~~~~~g~tpLh~A~~~~~~~~v~~ 153 (413)
T PHA02875 80 DVKAVEELLDLGKFADDVFYKD-GMTPLHLATILKKLDIMKLLIAR-----GADPDIPNTDKFSPLHLAVMMGDIKGIEL 153 (413)
T ss_pred CHHHHHHHHHcCCcccccccCC-CCCHHHHHHHhCCHHHHHHHHhC-----CCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 8877666654322111011111 12344455567777655555543 33443221 1234455556777654444
Q ss_pred HHHHHHhCCCCCCH---HhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchh---HHHHHHHHHhcCCHHHHHHHHHH
Q 015726 204 ILAEMRRKSIRPNA---TDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNV---YNIRIQSLCKLKRSEEAKALLDG 277 (401)
Q Consensus 204 ~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~ll~~~~~~~~~~~a~~~~~~ 277 (401)
+ .+.|..++. .-.+.+ ...+..|+.+ +.+.+.+.|..++... ..+.+...+..|+.+ +.+.
T Consensus 154 L----l~~g~~~~~~d~~g~TpL-~~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~ 220 (413)
T PHA02875 154 L----IDHKACLDIEDCCGCTPL-IIAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRL 220 (413)
T ss_pred H----HhcCCCCCCCCCCCCCHH-HHHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHH
Confidence 3 344543332 222233 3334456544 4455556665554322 124444445556654 4455
Q ss_pred HHHCCCCcCH
Q 015726 278 MLSRGIKPNL 287 (401)
Q Consensus 278 ~~~~~~~p~~ 287 (401)
+.+.|..++.
T Consensus 221 Ll~~gad~n~ 230 (413)
T PHA02875 221 FIKRGADCNI 230 (413)
T ss_pred HHHCCcCcch
Confidence 5667776664
No 431
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=53.65 E-value=69 Score=21.84 Aligned_cols=53 Identities=15% Similarity=0.068 Sum_probs=29.4
Q ss_pred cHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCC
Q 015726 74 DRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANM 126 (401)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 126 (401)
|...-..+...+...|++++|++.+-.+........+...-..++..+.-.|.
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 55566666777777777777777776666333223334455555555555444
No 432
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=53.34 E-value=88 Score=22.98 Aligned_cols=45 Identities=13% Similarity=0.036 Sum_probs=34.8
Q ss_pred hHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHH
Q 015726 92 NAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEE 136 (401)
Q Consensus 92 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 136 (401)
++..++|..|...+.-..-..+|......+-..|++.+|.++|+.
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 456778888885544444467888888888999999999999863
No 433
>PRK13342 recombination factor protein RarA; Reviewed
Probab=53.25 E-value=1.8e+02 Score=26.64 Aligned_cols=54 Identities=15% Similarity=0.002 Sum_probs=27.9
Q ss_pred cCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCC-----HHHHHHHHHHHHHCCC
Q 015726 230 EHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKR-----SEEAKALLDGMLSRGI 283 (401)
Q Consensus 230 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~ 283 (401)
..+.+.+...+..|.+.|..|....-..++.++...|. ..-|...++....-|.
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~~g~ 301 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGM 301 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHhCC
Confidence 35667777777777766655554444444444433332 2234444444444553
No 434
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=53.20 E-value=2.4e+02 Score=27.94 Aligned_cols=162 Identities=12% Similarity=0.140 Sum_probs=78.1
Q ss_pred HHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHh-hCCCCCC-HHHHHHHHHHHHh
Q 015726 81 AVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMD-KYGLRQS-VDALNALLLGCIL 158 (401)
Q Consensus 81 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-~~~~~~~-~~~~~~l~~~~~~ 158 (401)
+-..|-..|++++|+.+--.....-++.++..++.+++.-|... -.+.+.+.++.-. ..++.+. ....+.++..|..
T Consensus 65 ~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~-yi~~~~~~~~~~~~~~~iD~rL~~iv~rmi~kcl~ 143 (929)
T KOG2062|consen 65 ASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDM-YIETASETYKNPEQKSPIDQRLRDIVERMIQKCLD 143 (929)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHH-HHHHHHHHhcCccccCCCCHHHHHHHHHHHHHhhh
Confidence 33678889999999988655432223344455556655444322 1223333333111 1111111 1123334444444
Q ss_pred cCCHHHHHHH---------HHh-chhhcCCCCCHHhHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 015726 159 SKNYEEVKRI---------FTE-FPKVYGIEPNSETYNKVIKSFCESG-DSSSVYSILAEMRRKSIRPNATDFGLLLAGF 227 (401)
Q Consensus 159 ~~~~~~a~~~---------~~~-~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 227 (401)
.+++..|+-+ +++ +.+. ....+ ..+.++..+.... +-+--.++++.+.+.-.+....-|..+.++|
T Consensus 144 d~e~~~aiGia~E~~rld~ie~Ail~~-d~~~~--~~~yll~l~~s~v~~~efR~~vlr~lv~~y~~~~~PDy~~vc~c~ 220 (929)
T KOG2062|consen 144 DNEYKQAIGIAFETRRLDIIEEAILKS-DSVIG--NLTYLLELLISLVNNREFRNKVLRLLVKTYLKLPSPDYFSVCQCY 220 (929)
T ss_pred hhHHHHHHhHHhhhhhHHHHHHHhccc-cccch--HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCCCeeeeeeee
Confidence 4444433332 222 1111 11122 2333333333222 2333444555444432222333456677888
Q ss_pred HccCChHHHHHHHHHHHHc
Q 015726 228 YKEHKYEDVGKVLQMMEKC 246 (401)
Q Consensus 228 ~~~~~~~~a~~~~~~~~~~ 246 (401)
....+.+.+.++++++.+.
T Consensus 221 v~Ldd~~~va~ll~kL~~e 239 (929)
T KOG2062|consen 221 VFLDDAEAVADLLEKLVKE 239 (929)
T ss_pred EEcCCHHHHHHHHHHHHhc
Confidence 8999999999999999874
No 435
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.13 E-value=2.1e+02 Score=27.31 Aligned_cols=149 Identities=11% Similarity=0.060 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHhCCCchHHHHHHHHhh------hCCCCCC-------------chhHHHHH---HHHHHhcCChHHHHH
Q 015726 75 RMAFSIAVSKLSQANHFNAISQLLEELK------TRPDLRQ-------------NERFHVHS---IVLYGQANMIDHAMQ 132 (401)
Q Consensus 75 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~------~~~~~~~-------------~~~~~~~l---i~~~~~~~~~~~a~~ 132 (401)
..+.-.+..++...|+.+.+.++++... -.+.+.+ |..+|..+ |....+.|.+..|.+
T Consensus 284 vdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E 363 (665)
T KOG2422|consen 284 VDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALE 363 (665)
T ss_pred hhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHH
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHhc--hhhcCCCCCHHhHHHHHHHHHhcCC---hhHHHHHHH
Q 015726 133 TFEEMDKYGLRQSVDALNALLLGCI-LSKNYEEVKRIFTEF--PKVYGIEPNSETYNKVIKSFCESGD---SSSVYSILA 206 (401)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~ 206 (401)
+-+-+.+....-|+.....+|+.|+ +..+++-.+++++.. ......-||-.--..+...|.+... -+.|...+.
T Consensus 364 ~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~ 443 (665)
T KOG2422|consen 364 WCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALL 443 (665)
T ss_pred HHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHH
Q ss_pred HHHhCCCCCCHHhHHHHHHHH
Q 015726 207 EMRRKSIRPNATDFGLLLAGF 227 (401)
Q Consensus 207 ~~~~~~~~~~~~~~~~ll~~~ 227 (401)
+.... -....+-|+..+
T Consensus 444 qAl~~----~P~vl~eLld~~ 460 (665)
T KOG2422|consen 444 QALKH----HPLVLSELLDEL 460 (665)
T ss_pred HHHHh----CcHHHHHHHHhc
No 436
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=52.80 E-value=1.7e+02 Score=26.88 Aligned_cols=126 Identities=13% Similarity=0.103 Sum_probs=0.0
Q ss_pred CCcchhhchhHHHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCC
Q 015726 30 GDEAAALTIKEKKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQ 109 (401)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 109 (401)
+..++...-....+.+-+++.....-++-+..|..-.....+..-..-...++.-|.-.|++.+|-..++++. .|.+..
T Consensus 464 ~~lp~~s~g~et~~~ArsLlsar~aGeRllr~WGgGG~g~sVed~kdkI~~LLeEY~~~GdisEA~~CikeLg-mPfFhH 542 (645)
T KOG0403|consen 464 GTLPPVSQGRETLDKARSLLSARHAGERLLRVWGGGGGGWSVEDAKDKIDMLLEEYELSGDISEACHCIKELG-MPFFHH 542 (645)
T ss_pred CCCCCchhhHHHHHHHHHHHHHhhcccchhheecCCCCcchHHHHHHHHHHHHHHHHhccchHHHHHHHHHhC-CCcchH
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 015726 110 NERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKN 161 (401)
Q Consensus 110 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 161 (401)
.-++.+++.+.-+.|+-...+.++++.-..|+- |-+.+-.+|.+..+
T Consensus 543 -EvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglI----T~nQMtkGf~RV~d 589 (645)
T KOG0403|consen 543 -EVVKKALVMVMEKKGDSTMILDLLKECFKSGLI----TTNQMTKGFERVYD 589 (645)
T ss_pred -HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCce----eHHHhhhhhhhhhc
No 437
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=52.79 E-value=1.8e+02 Score=26.28 Aligned_cols=202 Identities=13% Similarity=0.110 Sum_probs=112.1
Q ss_pred CCCchHHHHHHHHhh----hCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhh-CCCCCCHHHHHHHHHHHHh----
Q 015726 88 ANHFNAISQLLEELK----TRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDK-YGLRQSVDALNALLLGCIL---- 158 (401)
Q Consensus 88 ~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~---- 158 (401)
.++++.|++-+-... ...+...+..++..++..|...++|+.--+...-+.+ +| . .-.+...++.-+..
T Consensus 25 ~~~~~~~ie~Ll~~EkqtR~~~D~~s~~kv~~~i~~lc~~~~~w~~Lne~i~~Lskkrg-q-lk~ai~~Mvq~~~~y~~~ 102 (439)
T KOG1498|consen 25 QIDLEAAIEELLNLEKQTRLASDMASNTKVLEEIMKLCFSAKDWDLLNEQIRLLSKKRG-Q-LKQAIQSMVQQAMTYIDG 102 (439)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhh-H-HHHHHHHHHHHHHHhccC
Confidence 677777777654443 4455666677888888899999888877666555433 33 1 12222223332221
Q ss_pred cCCHHHHHHHHHhch--hhcCCCCC---HHhHHHHHHHHHhcCChhHHHHHHHHHHhC--C-CCCCH--HhHHHHHHHHH
Q 015726 159 SKNYEEVKRIFTEFP--KVYGIEPN---SETYNKVIKSFCESGDSSSVYSILAEMRRK--S-IRPNA--TDFGLLLAGFY 228 (401)
Q Consensus 159 ~~~~~~a~~~~~~~~--~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~-~~~~~--~~~~~ll~~~~ 228 (401)
..+.+--+.+.+.+. .+..+-.. ...-..+...+-..|++++|..++.++.-. | ..... ....--++.|.
T Consensus 103 ~~d~~~k~~li~tLr~VtegkIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG 182 (439)
T KOG1498|consen 103 TPDLETKIKLIETLRTVTEGKIYVEVERARLTKMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCL 182 (439)
T ss_pred CCCchhHHHHHHHHHHhhcCceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 112232333332221 11111111 112345666777889999999998875321 1 00000 01112356677
Q ss_pred ccCChHHHHHHHHHHHHcCCC-CC-----chhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCcCHHHHH
Q 015726 229 KEHKYEDVGKVLQMMEKCGIA-SG-----VNVYNIRIQSLCKLKRSEEAKALLDGMLSRG-IKPNLDTYK 291 (401)
Q Consensus 229 ~~~~~~~a~~~~~~~~~~~~~-~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~ 291 (401)
..+|+-.|.-+-+++...-+. |+ ..-|+.++......+.+=.+.+.++.+...| ++-|+.-|.
T Consensus 183 ~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~ 252 (439)
T KOG1498|consen 183 LRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWI 252 (439)
T ss_pred HhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhh
Confidence 778888777666666443222 22 2357888888888888888888888887765 333444443
No 438
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=52.36 E-value=73 Score=21.72 Aligned_cols=30 Identities=27% Similarity=0.310 Sum_probs=14.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhchh
Q 015726 145 SVDALNALLLGCILSKNYEEVKRIFTEFPK 174 (401)
Q Consensus 145 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 174 (401)
|......+...+...|++++|++.+-.+.+
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 444444445555555555555555554443
No 439
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=52.02 E-value=1.7e+02 Score=25.75 Aligned_cols=55 Identities=13% Similarity=0.161 Sum_probs=27.8
Q ss_pred HHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 015726 156 CILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRR 210 (401)
Q Consensus 156 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 210 (401)
..+.|+..+|.+.|+++.++..+..-......++.++....-+..+..++-+..+
T Consensus 285 ARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDd 339 (556)
T KOG3807|consen 285 ARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDD 339 (556)
T ss_pred HHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3456677777777776655421111112234456666555555555555444433
No 440
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=52.01 E-value=73 Score=21.61 Aligned_cols=13 Identities=38% Similarity=0.733 Sum_probs=4.9
Q ss_pred CChHHHHHHHHHH
Q 015726 301 GNLEGAKKLFASM 313 (401)
Q Consensus 301 ~~~~~a~~~~~~m 313 (401)
|+.+.|.+++..+
T Consensus 50 g~~~~ar~LL~~L 62 (88)
T cd08819 50 GNESGARELLKRI 62 (88)
T ss_pred CcHHHHHHHHHHh
Confidence 3333333333333
No 441
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=51.90 E-value=83 Score=22.27 Aligned_cols=19 Identities=16% Similarity=0.107 Sum_probs=8.2
Q ss_pred HHHHHhcCCHHHHHHHHHH
Q 015726 259 IQSLCKLKRSEEAKALLDG 277 (401)
Q Consensus 259 l~~~~~~~~~~~a~~~~~~ 277 (401)
+.-|...|+.++|..-+.+
T Consensus 9 l~ey~~~~d~~ea~~~l~e 27 (113)
T PF02847_consen 9 LMEYFSSGDVDEAVECLKE 27 (113)
T ss_dssp HHHHHHHT-HHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHH
Confidence 3344444555555444444
No 442
>PRK13342 recombination factor protein RarA; Reviewed
Probab=51.64 E-value=2e+02 Score=26.47 Aligned_cols=37 Identities=16% Similarity=0.067 Sum_probs=21.4
Q ss_pred CCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccC
Q 015726 300 EGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGG 336 (401)
Q Consensus 300 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 336 (401)
..+.+.|+.++..|.+.|..|....-..++.++...|
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 3567777777777777766665444444444443333
No 443
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.37 E-value=43 Score=33.36 Aligned_cols=92 Identities=12% Similarity=0.102 Sum_probs=54.4
Q ss_pred cCCChHHHHHHHHHHHhC------CCCCCHhhHHHHHHHHH---------------ccCCHHHHHHHHHHHHHCCCCCCH
Q 015726 299 KEGNLEGAKKLFASMTNG------GCEPDSYCFFMFTYFLC---------------QGGEYETALKVCRASMAKGWVPHF 357 (401)
Q Consensus 299 ~~~~~~~a~~~~~~m~~~------~~~~~~~~~~~li~~~~---------------~~g~~~~a~~~~~~~~~~~~~~~~ 357 (401)
..|++.+|.+.|+.++-. .-+-+..-...++..|. ..+..+++.++-.......+.|-.
T Consensus 1003 t~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElAaYFt~~~Lqp~H 1082 (1202)
T KOG0292|consen 1003 TEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELAAYFTHCKLQPMH 1082 (1202)
T ss_pred ccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHHHHhhcCCCCcHH
Confidence 568899999988887632 11122222333333331 123444554444444444555543
Q ss_pred --HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC
Q 015726 358 --STMKSLVTGLASISKVAEANELIGLMKKRFPKS 390 (401)
Q Consensus 358 --~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 390 (401)
.+...-+..+.+.+++..|-.+-.++++..|..
T Consensus 1083 ~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~ 1117 (1202)
T KOG0292|consen 1083 RILALRTAMNVFFKLKNLKTAAEFARRLLELAPSP 1117 (1202)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCC
Confidence 345567788889999999988888888775543
No 444
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=51.28 E-value=2.5e+02 Score=27.90 Aligned_cols=47 Identities=11% Similarity=0.086 Sum_probs=28.3
Q ss_pred HHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 015726 162 YEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRR 210 (401)
Q Consensus 162 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 210 (401)
.++....+....+..|+..+......++... .|+...++.+++++..
T Consensus 180 ~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia 226 (709)
T PRK08691 180 AQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIA 226 (709)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 4455555555555556666666665555543 4777777777766554
No 445
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=51.14 E-value=1.4e+02 Score=24.50 Aligned_cols=25 Identities=8% Similarity=-0.056 Sum_probs=15.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhc
Q 015726 362 SLVTGLASISKVAEANELIGLMKKR 386 (401)
Q Consensus 362 ~l~~~~~~~g~~~~a~~~~~~~~~~ 386 (401)
.+.....+.|+.++|.+.|.++...
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 3445556667777777777666654
No 446
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=50.76 E-value=98 Score=22.73 Aligned_cols=43 Identities=14% Similarity=0.071 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 015726 340 TALKVCRASMAKGWV-PHFSTMKSLVTGLASISKVAEANELIGL 382 (401)
Q Consensus 340 ~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 382 (401)
.+.++|..|..+|+- --...|......+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 555555555555432 2234455555555555555555555543
No 447
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=49.10 E-value=95 Score=22.09 Aligned_cols=26 Identities=19% Similarity=0.396 Sum_probs=14.2
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHh
Q 015726 290 YKHLIHGFGKEGNLEGAKKLFASMTN 315 (401)
Q Consensus 290 ~~~li~~~~~~~~~~~a~~~~~~m~~ 315 (401)
|..|+..|...|..++|++++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 45555555555555555555555544
No 448
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=48.98 E-value=1.2e+02 Score=26.37 Aligned_cols=58 Identities=14% Similarity=0.108 Sum_probs=47.0
Q ss_pred HHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhc
Q 015726 237 GKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGK 299 (401)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 299 (401)
.++++.+...++.|.-..+.-+.-.+.+.=.+.+.+.+|+.+... ..-|..|+..||.
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcs 320 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCS 320 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHH
Confidence 467888889999999999988888888888999999999999763 3336667776653
No 449
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=48.91 E-value=1.8e+02 Score=25.27 Aligned_cols=17 Identities=24% Similarity=0.429 Sum_probs=10.2
Q ss_pred HHHHHHHHHhcCCHHHH
Q 015726 255 YNIRIQSLCKLKRSEEA 271 (401)
Q Consensus 255 ~~~ll~~~~~~~~~~~a 271 (401)
|.-++.+++..|+.+..
T Consensus 324 yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 324 YAPLLAAFCSQGQSELE 340 (412)
T ss_pred hhHHHHHHhcCChHHHH
Confidence 55566666666665543
No 450
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=48.87 E-value=1.1e+02 Score=23.87 Aligned_cols=45 Identities=13% Similarity=0.019 Sum_probs=20.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCC
Q 015726 257 IRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEG 301 (401)
Q Consensus 257 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~ 301 (401)
.++..+...++.-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 30 ~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 30 EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 333444334444455555555555544444444444444444444
No 451
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=48.73 E-value=1.6e+02 Score=24.56 Aligned_cols=82 Identities=11% Similarity=0.187 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhC---CCCCCHhhHHHHHH-----HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 015726 304 EGAKKLFASMTNG---GCEPDSYCFFMFTY-----FLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAE 375 (401)
Q Consensus 304 ~~a~~~~~~m~~~---~~~~~~~~~~~li~-----~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 375 (401)
+.|.+.|+...+. .++|...++-.++- .|-..|+.++|.++.+...+..+. . +..+ ....+.+
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~-~-------l~~l-~e~~~~d 213 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAIS-E-------LDTL-SEESYKD 213 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH-G-------GGGS-HTTTHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh-h-------hccc-chhhhHH
Confidence 4556666554422 25666655544433 345689999999988776544210 0 1111 2355777
Q ss_pred HHHHHHHHHhcCCCCcccchhcC
Q 015726 376 ANELIGLMKKRFPKSGDMWNAAL 398 (401)
Q Consensus 376 a~~~~~~~~~~~~~~~~~~~~ll 398 (401)
+..+++-+++ |...|+.=.
T Consensus 214 ~~~ilqlLrd----Nl~lW~~e~ 232 (236)
T PF00244_consen 214 STLILQLLRD----NLTLWTSEE 232 (236)
T ss_dssp HHHHHHHHHH----HHHHHTTT-
T ss_pred HHHHHHHHHH----HHHhccccc
Confidence 7777777765 456666533
No 452
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=48.66 E-value=59 Score=19.57 Aligned_cols=24 Identities=4% Similarity=-0.103 Sum_probs=13.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhC
Q 015726 117 SIVLYGQANMIDHAMQTFEEMDKY 140 (401)
Q Consensus 117 li~~~~~~~~~~~a~~~~~~~~~~ 140 (401)
+..++.+.|++++|.+..+.+++.
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhh
Confidence 444556666666666666666654
No 453
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=48.24 E-value=2.4e+02 Score=26.52 Aligned_cols=101 Identities=12% Similarity=0.110 Sum_probs=54.2
Q ss_pred HHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHH
Q 015726 163 EEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQM 242 (401)
Q Consensus 163 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 242 (401)
++..+.++...+..|+..+......++. ...|+...|+.++++....+ ....++..+...+
T Consensus 183 ~~i~~~L~~i~~~Egi~~e~eAL~~Ia~--~S~Gd~RdAL~lLeq~i~~~--~~~it~~~V~~~l--------------- 243 (484)
T PRK14956 183 SVLQDYSEKLCKIENVQYDQEGLFWIAK--KGDGSVRDMLSFMEQAIVFT--DSKLTGVKIRKMI--------------- 243 (484)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCChHHHHHHHHHHHHHhC--CCCcCHHHHHHHh---------------
Confidence 3444555555455566666665554443 23477777777777654321 0112222221111
Q ss_pred HHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH
Q 015726 243 MEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNL 287 (401)
Q Consensus 243 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 287 (401)
|+ .+...+..++.+....+....|+.+++++.+.|..|..
T Consensus 244 ----g~-~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~ 283 (484)
T PRK14956 244 ----GY-HGIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYK 283 (484)
T ss_pred ----CC-CCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHH
Confidence 22 24444555666555555566788888888888776543
No 454
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=48.13 E-value=1.7e+02 Score=24.78 Aligned_cols=30 Identities=13% Similarity=0.014 Sum_probs=18.9
Q ss_pred HHHHHHHHHhcCCChhHHHHHhhhccCCCC
Q 015726 41 KKRATIARLKSESNPFRILDICCGASLAPE 70 (401)
Q Consensus 41 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 70 (401)
-+..+++.+-+.+....|+++......-+.
T Consensus 84 ~L~~iL~~lL~~~~~~~a~~i~~~y~~l~~ 113 (258)
T PF07064_consen 84 FLHHILRHLLRRNLDEEALEIASKYRSLPY 113 (258)
T ss_pred chHHHHHHHHhcCCcHHHHHHHHHhccCCC
Confidence 355566666666677777777766654443
No 455
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=48.13 E-value=1.1e+02 Score=24.59 Aligned_cols=49 Identities=4% Similarity=-0.025 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCC
Q 015726 77 AFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANM 126 (401)
Q Consensus 77 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 126 (401)
..+.+++.|.-.|+++.|-++|.-+...+.+.. ...|..-+....+.+.
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDi-R~~W~iG~eIL~~~~~ 91 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDI-RSLWGIGAEILMRRGE 91 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcCCCCCh-HhcchHHHHHHHcCCC
Confidence 456666777777777777777777765544333 3344444444444433
No 456
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=47.40 E-value=1e+02 Score=21.94 Aligned_cols=27 Identities=11% Similarity=0.047 Sum_probs=25.1
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHH
Q 015726 324 CFFMFTYFLCQGGEYETALKVCRASMA 350 (401)
Q Consensus 324 ~~~~li~~~~~~g~~~~a~~~~~~~~~ 350 (401)
-|..++..|...|..++|.+++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 688999999999999999999998887
No 457
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=47.39 E-value=1.7e+02 Score=24.45 Aligned_cols=139 Identities=14% Similarity=0.181 Sum_probs=70.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHH
Q 015726 112 RFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKS 191 (401)
Q Consensus 112 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 191 (401)
+.....+..|.+.-+|..|-...+++.+ | ..+-.++++ |.+..+.+--.++.+-. +..+++.+......++
T Consensus 131 QAlRRtMEiyS~ttRFalaCN~s~KIiE----P-IQSRCAiLR-ysklsd~qiL~Rl~~v~-k~Ekv~yt~dgLeaii-- 201 (333)
T KOG0991|consen 131 QALRRTMEIYSNTTRFALACNQSEKIIE----P-IQSRCAILR-YSKLSDQQILKRLLEVA-KAEKVNYTDDGLEAII-- 201 (333)
T ss_pred HHHHHHHHHHcccchhhhhhcchhhhhh----h-HHhhhHhhh-hcccCHHHHHHHHHHHH-HHhCCCCCcchHHHhh--
Confidence 3455556666666666666666665553 1 122222222 33333333333333222 3334444444443333
Q ss_pred HHhcCChhHHHHHHHHHHhC------------CCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHH
Q 015726 192 FCESGDSSSVYSILAEMRRK------------SIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRI 259 (401)
Q Consensus 192 ~~~~~~~~~a~~~~~~~~~~------------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 259 (401)
+...||..+|+.-++.-... --.|.......++..|. .+++++|.+++.++-+.|+.|. ...+.+.
T Consensus 202 fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~-Dii~~~F 279 (333)
T KOG0991|consen 202 FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPE-DIITTLF 279 (333)
T ss_pred hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHH-HHHHHHH
Confidence 23456666666655543221 12466666777776554 4578888888888877777663 3344444
Q ss_pred HH
Q 015726 260 QS 261 (401)
Q Consensus 260 ~~ 261 (401)
..
T Consensus 280 Rv 281 (333)
T KOG0991|consen 280 RV 281 (333)
T ss_pred HH
Confidence 44
No 458
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=47.33 E-value=2.2e+02 Score=27.22 Aligned_cols=20 Identities=0% Similarity=-0.105 Sum_probs=11.3
Q ss_pred HHHHHHhCCCchHHHHHHHH
Q 015726 81 AVSKLSQANHFNAISQLLEE 100 (401)
Q Consensus 81 l~~~~~~~~~~~~a~~~~~~ 100 (401)
+-..|-..|++++|++.--.
T Consensus 65 ~SKvYy~LgeY~~Ai~yAL~ 84 (926)
T COG5116 65 LSKVYYVLGEYQQAIEYALR 84 (926)
T ss_pred HHHHHHHHHhHHHHHHHHHh
Confidence 33455666666666665433
No 459
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=46.99 E-value=1.7e+02 Score=24.40 Aligned_cols=48 Identities=15% Similarity=0.084 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHC---CCCCCHHHHHHHH-----HHHHccCCHHHHHHHHHHHHhc
Q 015726 339 ETALKVCRASMAK---GWVPHFSTMKSLV-----TGLASISKVAEANELIGLMKKR 386 (401)
Q Consensus 339 ~~a~~~~~~~~~~---~~~~~~~~~~~l~-----~~~~~~g~~~~a~~~~~~~~~~ 386 (401)
++|.+.|+++.+. .++|...++..++ -.|-..|+.++|.++.++..+.
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 4555555554332 2556555544333 3345689999998887766543
No 460
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=45.91 E-value=67 Score=29.17 Aligned_cols=62 Identities=10% Similarity=0.005 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHhhhCCC------CCCchhHHHHHHHHHHhcCChHHHHHHHHHHh
Q 015726 77 AFSIAVSKLSQANHFNAISQLLEELKTRPD------LRQNERFHVHSIVLYGQANMIDHAMQTFEEMD 138 (401)
Q Consensus 77 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 138 (401)
+...+++..+-.|++..|+++++.+.-... .+....++-.+.-+|.-.+++.+|.+.|....
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556667777777777766541110 11223344445555666666666666666554
No 461
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=45.85 E-value=2e+02 Score=24.89 Aligned_cols=26 Identities=19% Similarity=0.132 Sum_probs=13.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015726 255 YNIRIQSLCKLKRSEEAKALLDGMLS 280 (401)
Q Consensus 255 ~~~ll~~~~~~~~~~~a~~~~~~~~~ 280 (401)
-...++.+...|++..|++++.+..+
T Consensus 130 ~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 130 TQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 33444445555555555555554443
No 462
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=45.84 E-value=94 Score=21.10 Aligned_cols=15 Identities=7% Similarity=0.089 Sum_probs=6.8
Q ss_pred cCChHHHHHHHHHHH
Q 015726 230 EHKYEDVGKVLQMME 244 (401)
Q Consensus 230 ~~~~~~a~~~~~~~~ 244 (401)
.|+.+.|.+++..+.
T Consensus 49 ~g~~~~ar~LL~~L~ 63 (88)
T cd08819 49 HGNESGARELLKRIV 63 (88)
T ss_pred cCcHHHHHHHHHHhc
Confidence 344444444444444
No 463
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=45.72 E-value=2.1e+02 Score=25.36 Aligned_cols=64 Identities=16% Similarity=0.184 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHhCCCCCCH----hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 015726 303 LEGAKKLFASMTNGGCEPDS----YCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLA 368 (401)
Q Consensus 303 ~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 368 (401)
.+++..++.++++. -|+. ..|.+++......|.++.++.+|++++..|..|-...-..+++.+-
T Consensus 119 ~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 119 KEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 34666666666654 3443 4566777777778888888888888888888877777776666654
No 464
>PRK09857 putative transposase; Provisional
Probab=45.71 E-value=2e+02 Score=24.94 Aligned_cols=64 Identities=14% Similarity=0.153 Sum_probs=30.8
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 015726 292 HLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPH 356 (401)
Q Consensus 292 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 356 (401)
.++....+.++.++..++++.+.+. ........-.+..-+.+.|.-+++.++..+|...|+..+
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3443334445544445555444433 122222333444444455555566666677776665543
No 465
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.39 E-value=1.8e+02 Score=24.25 Aligned_cols=25 Identities=12% Similarity=0.215 Sum_probs=17.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCC
Q 015726 260 QSLCKLKRSEEAKALLDGMLSRGIK 284 (401)
Q Consensus 260 ~~~~~~~~~~~a~~~~~~~~~~~~~ 284 (401)
..-+..+++.+|.++|+++....+.
T Consensus 162 ~yaa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 162 QYAAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3345567888888888888766444
No 466
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=45.06 E-value=2e+02 Score=24.65 Aligned_cols=83 Identities=14% Similarity=0.080 Sum_probs=48.0
Q ss_pred HhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHH----hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh---
Q 015726 86 SQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYG----QANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCIL--- 158 (401)
Q Consensus 86 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 158 (401)
...+++..+...+.......+. .....+...|. ...+..+|.++|....+.|. ......|...|..
T Consensus 52 ~~~~~~~~a~~~~~~a~~~~~~----~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~g 124 (292)
T COG0790 52 AYPPDYAKALKSYEKAAELGDA----AALALLGQMYGAGKGVSRDKTKAADWYRCAAADGL---AEALFNLGLMYANGRG 124 (292)
T ss_pred cccccHHHHHHHHHHhhhcCCh----HHHHHHHHHHHhccCccccHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCC
Confidence 3566777788888776642222 22333333333 33457788888887776652 2333345544443
Q ss_pred -cCCHHHHHHHHHhchhh
Q 015726 159 -SKNYEEVKRIFTEFPKV 175 (401)
Q Consensus 159 -~~~~~~a~~~~~~~~~~ 175 (401)
..+..+|...|.+..+.
T Consensus 125 v~~d~~~A~~~~~~Aa~~ 142 (292)
T COG0790 125 VPLDLVKALKYYEKAAKL 142 (292)
T ss_pred cccCHHHHHHHHHHHHHc
Confidence 34777888888777543
No 467
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=44.65 E-value=1.1e+02 Score=21.90 Aligned_cols=38 Identities=13% Similarity=0.178 Sum_probs=26.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 015726 116 HSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLL 154 (401)
Q Consensus 116 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 154 (401)
+++....++...++|+++++-|.+.| ..+...-+.|-.
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~ 103 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRS 103 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 46677777888888888888888887 455554444433
No 468
>PRK09857 putative transposase; Provisional
Probab=44.35 E-value=2.1e+02 Score=24.78 Aligned_cols=16 Identities=19% Similarity=0.183 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHhCCCC
Q 015726 304 EGAKKLFASMTNGGCE 319 (401)
Q Consensus 304 ~~a~~~~~~m~~~~~~ 319 (401)
+++.++..+|...|+.
T Consensus 257 e~~~~ia~~ml~~g~~ 272 (292)
T PRK09857 257 SKALHIAKIMLESGVP 272 (292)
T ss_pred HHHHHHHHHHHHcCCC
Confidence 4445555555555443
No 469
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=43.97 E-value=2.1e+02 Score=24.70 Aligned_cols=24 Identities=13% Similarity=0.095 Sum_probs=15.6
Q ss_pred CCchhHHHHHHHHHhcCCHHHHHH
Q 015726 250 SGVNVYNIRIQSLCKLKRSEEAKA 273 (401)
Q Consensus 250 ~~~~~~~~ll~~~~~~~~~~~a~~ 273 (401)
-|...|..++.+|.-.|+...+.+
T Consensus 195 Fd~~~Y~~v~~AY~lLgk~~~~~d 218 (291)
T PF10475_consen 195 FDPDKYSKVQEAYQLLGKTQSAMD 218 (291)
T ss_pred CCHHHHHHHHHHHHHHhhhHHHHH
Confidence 455667777777777776655443
No 470
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=43.95 E-value=2.4e+02 Score=25.24 Aligned_cols=56 Identities=18% Similarity=0.126 Sum_probs=33.9
Q ss_pred HhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHH----HHHHccCCHHHHHHHHHHHHHCC
Q 015726 297 FGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFT----YFLCQGGEYETALKVCRASMAKG 352 (401)
Q Consensus 297 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li----~~~~~~g~~~~a~~~~~~~~~~~ 352 (401)
+.+-++..-+......+.+..+.--..+|.++- .-..+.+..++|.+..-.|.+.|
T Consensus 287 F~kDnnt~l~k~av~sl~k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie~~ 346 (422)
T KOG2582|consen 287 FTKDNNTGLAKQAVSSLYKKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKYILQMIEDG 346 (422)
T ss_pred HhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 345566666677766666665555555665542 22335566777777777777653
No 471
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=42.54 E-value=1.2e+02 Score=21.43 Aligned_cols=20 Identities=20% Similarity=0.306 Sum_probs=8.6
Q ss_pred HHHHHhcCCHHHHHHHHHhc
Q 015726 153 LLGCILSKNYEEVKRIFTEF 172 (401)
Q Consensus 153 ~~~~~~~~~~~~a~~~~~~~ 172 (401)
+.-|...|+.++|..-+.++
T Consensus 9 l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 9 LMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHhcCCCHHHHHHHHHHh
Confidence 33444444455544444444
No 472
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=42.43 E-value=2.6e+02 Score=25.32 Aligned_cols=16 Identities=31% Similarity=0.515 Sum_probs=8.0
Q ss_pred hCCCchHHHHHHHHhh
Q 015726 87 QANHFNAISQLLEELK 102 (401)
Q Consensus 87 ~~~~~~~a~~~~~~~~ 102 (401)
+.+++..|.++++.+.
T Consensus 143 n~~~y~aA~~~l~~l~ 158 (379)
T PF09670_consen 143 NRYDYGAAARILEELL 158 (379)
T ss_pred hcCCHHHHHHHHHHHH
Confidence 4455555555555544
No 473
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=42.08 E-value=1.9e+02 Score=23.64 Aligned_cols=22 Identities=27% Similarity=0.126 Sum_probs=11.8
Q ss_pred HHHHHhcCCHHHHHHHHHhchh
Q 015726 153 LLGCILSKNYEEVKRIFTEFPK 174 (401)
Q Consensus 153 ~~~~~~~~~~~~a~~~~~~~~~ 174 (401)
.....+.|+.++|.+.|..+..
T Consensus 172 geL~rrlg~~~eA~~~fs~vi~ 193 (214)
T PF09986_consen 172 GELNRRLGNYDEAKRWFSRVIG 193 (214)
T ss_pred HHHHHHhCCHHHHHHHHHHHHc
Confidence 3444455555555555555544
No 474
>PRK09462 fur ferric uptake regulator; Provisional
Probab=41.98 E-value=1.5e+02 Score=22.40 Aligned_cols=63 Identities=13% Similarity=0.157 Sum_probs=41.4
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHhcC-CChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHH
Q 015726 276 DGMLSRGIKPNLDTYKHLIHGFGKE-GNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYE 339 (401)
Q Consensus 276 ~~~~~~~~~p~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 339 (401)
+.+.+.|.+++.. -..++..+... +..-.|.++++.+.+.+...+..|.-.-+..+...|-+.
T Consensus 6 ~~l~~~glr~T~q-R~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~ 69 (148)
T PRK09462 6 TALKKAGLKVTLP-RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (148)
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 4456667765543 23344444443 467788999999988876667777666677777777553
No 475
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=41.45 E-value=1.7e+02 Score=22.96 Aligned_cols=108 Identities=17% Similarity=0.215 Sum_probs=48.4
Q ss_pred HHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 015726 236 VGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTN 315 (401)
Q Consensus 236 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 315 (401)
...++..+.+.|.-.|...-...+..-.+.| ..-..+..++.+.|+ +..+-...+..+......+.|.+++..-..
T Consensus 54 Ie~Vi~~l~~~~~ldD~~fAe~~i~~r~~~g--~G~~rl~qeL~qkGi--~~~~Ie~aL~~~~~~~~~~~a~~~~~kk~~ 129 (174)
T COG2137 54 IEEVIDRLAEEGYLDDTRFAEAYIRSRSRKG--KGPARLKQELKQKGI--DDEIIEEALELIDEEDEQERARKVLRKKFK 129 (174)
T ss_pred HHHHHHHHHHcCcccHHHHHHHHHHHHHhcc--cChHHHHHHHHHcCC--CHHHHHHHHhccchHHHHHHHHHHHHHHhC
Confidence 3344445555555444444444444444444 334455555666664 333444444444444444455554444333
Q ss_pred C-CCCCCHhhHHHHHHHHHccC-CHHHHHHHHHH
Q 015726 316 G-GCEPDSYCFFMFTYFLCQGG-EYETALKVCRA 347 (401)
Q Consensus 316 ~-~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~ 347 (401)
. +..++..-...+...+...| .++.+..++..
T Consensus 130 ~~~~~~~~~~k~Ki~r~L~~rGFs~~~i~~~l~~ 163 (174)
T COG2137 130 RENKPPDKKEKAKIQRFLLRRGFSYEVIKEALNE 163 (174)
T ss_pred ccccCcchhHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 2 23344333444444444333 34444444443
No 476
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=41.25 E-value=2.1e+02 Score=23.92 Aligned_cols=83 Identities=13% Similarity=0.073 Sum_probs=42.5
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHh-HHHHHHHHHhcCCh
Q 015726 121 YGQANMIDHAMQTFEEMDKYGLRQSVDA-LNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSET-YNKVIKSFCESGDS 198 (401)
Q Consensus 121 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~ 198 (401)
|....+++.|..-|.+.+.. .|+..+ |..-+-++.+..+++.+..--.... .+.||..- ...+.........+
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrral---ql~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRAL---QLDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHH---hcChHHHHHHHHHHHHHHhhccc
Confidence 44445566666655555543 444433 3344555556666665554444433 22444432 33334444555666
Q ss_pred hHHHHHHHHH
Q 015726 199 SSVYSILAEM 208 (401)
Q Consensus 199 ~~a~~~~~~~ 208 (401)
+.|+..+.+.
T Consensus 95 ~eaI~~Lqra 104 (284)
T KOG4642|consen 95 DEAIKVLQRA 104 (284)
T ss_pred cHHHHHHHHH
Confidence 6666666665
No 477
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=41.14 E-value=3.1e+02 Score=25.75 Aligned_cols=109 Identities=12% Similarity=-0.008 Sum_probs=69.0
Q ss_pred HHHHhCCCchHHHHHHHHhh--hCCC-CCC----chhHHHHHHHHHHhcCChHHHHHHHHHHh-------hCCCCCCH--
Q 015726 83 SKLSQANHFNAISQLLEELK--TRPD-LRQ----NERFHVHSIVLYGQANMIDHAMQTFEEMD-------KYGLRQSV-- 146 (401)
Q Consensus 83 ~~~~~~~~~~~a~~~~~~~~--~~~~-~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~-- 146 (401)
...--.|++..|.+++...- ..++ ..+ .-.+++.+.-.+.+.|.+..+..+|.+.. ..|++|..
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 33455789999999886654 2222 112 12233555555566677666666666554 35554431
Q ss_pred ---------HHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHh
Q 015726 147 ---------DALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCE 194 (401)
Q Consensus 147 ---------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 194 (401)
.+|| ..-.|...|++-.|.+.|.+..+.+ ..+...|--|..+|.-
T Consensus 328 tls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~vf--h~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 328 TLSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHVF--HRNPRLWLRLAECCIM 381 (696)
T ss_pred ehhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHH
Confidence 2333 3445778899999999999988766 6677788888888764
No 478
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=41.09 E-value=1.1e+02 Score=20.66 Aligned_cols=44 Identities=7% Similarity=-0.029 Sum_probs=27.2
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 015726 343 KVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKR 386 (401)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 386 (401)
++|+-....|+..|+.+|..+++.+.-.=-++...++++.|...
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s~ 72 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCSG 72 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHcc
Confidence 55555555566666666666666665555566666666666544
No 479
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=40.86 E-value=3.6e+02 Score=26.44 Aligned_cols=28 Identities=11% Similarity=0.101 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhc---CCChHHHHHHHHHHHh
Q 015726 288 DTYKHLIHGFGK---EGNLEGAKKLFASMTN 315 (401)
Q Consensus 288 ~~~~~li~~~~~---~~~~~~a~~~~~~m~~ 315 (401)
.-+..||..|.+ ..++.+|.+++--+..
T Consensus 325 ln~arLI~~Y~~~F~~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 325 LNFARLIGQYTRSFEITDPREALQYLYLICL 355 (613)
T ss_dssp --HHHHHHHHHHTTTTT-HHHHHHHHHGGGG
T ss_pred cCHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 345566666654 3466667666665554
No 480
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=40.82 E-value=4.4e+02 Score=27.45 Aligned_cols=197 Identities=11% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHHHHHHhCCCchHHHHHHHHhh----hCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH--
Q 015726 80 IAVSKLSQANHFNAISQLLEELK----TRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALL-- 153 (401)
Q Consensus 80 ~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-- 153 (401)
..+..+...++|.+|..+.++-+ -.-+..| ..++..+=...-+-++.+.--.++..+.+. ..+...|....
T Consensus 699 ~~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p-~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~E--Dvt~tmY~~~~~~ 775 (928)
T PF04762_consen 699 AGIRKLLDAKDYKEAFELCRKHRIDLNLLYDHNP-EQFLENIELFVEQIKDVDYLNLFLSSLRNE--DVTKTMYKDTYPP 775 (928)
T ss_pred HHHHHHHhhccHHHHHHHHHHhccccceEEECCH-HHHHHHHHHHHHhcCCHHHHHHHHHhcccc--ccccccccccccc
Q ss_pred ----------HHHHhcCCHHHHHHHHHhchh-hcCCCCCHHhHHHHHHHHHhcC--ChhHHHHHHHHHHhCCCCCCHHhH
Q 015726 154 ----------LGCILSKNYEEVKRIFTEFPK-VYGIEPNSETYNKVIKSFCESG--DSSSVYSILAEMRRKSIRPNATDF 220 (401)
Q Consensus 154 ----------~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~ 220 (401)
......+.+...-+.+.+..+ . .....-...++.+|++.+ +++.|+..+.++.+.
T Consensus 776 ~~~~~~~~~~~~~~~~~KVn~ICdair~~l~~~---~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~--------- 843 (928)
T PF04762_consen 776 SSEAQPNSNSSTASSESKVNKICDAIRKALEKP---KDKDKYLQPILTAYVKKSPPDLEEALQLIKELREE--------- 843 (928)
T ss_pred ccccccccccCCCccccHHHHHHHHHHHHhccc---ccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc---------
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcC
Q 015726 221 GLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKE 300 (401)
Q Consensus 221 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 300 (401)
+...|.+.++.+.- +..-...|+.-+..| |++.|.-+-++-.+ |+.-|--.++-+.+.
T Consensus 844 -----------~~~~ae~alkyl~f--LvDvn~Ly~~ALG~Y----Dl~Lal~VAq~SQk-----DPKEYLPfL~~L~~l 901 (928)
T PF04762_consen 844 -----------DPESAEEALKYLCF--LVDVNKLYDVALGTY----DLELALMVAQQSQK-----DPKEYLPFLQELQKL 901 (928)
T ss_pred -----------ChHHHHHHHhHhee--eccHHHHHHHHhhhc----CHHHHHHHHHHhcc-----ChHHHHHHHHHHHhC
Q ss_pred -------------CChHHHHHHHHHH
Q 015726 301 -------------GNLEGAKKLFASM 313 (401)
Q Consensus 301 -------------~~~~~a~~~~~~m 313 (401)
+++++|++-+.++
T Consensus 902 ~~~~rry~ID~hLkRy~kAL~~L~~~ 927 (928)
T PF04762_consen 902 PPLYRRYKIDDHLKRYEKALRHLSAC 927 (928)
T ss_pred ChhheeeeHhhhhCCHHHHHHHHHhh
No 481
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=40.75 E-value=3.8e+02 Score=26.73 Aligned_cols=109 Identities=12% Similarity=0.122 Sum_probs=63.3
Q ss_pred ccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchh------HHHHHHHHHHhcCChHHHHHHHHHHhhCC--CCC
Q 015726 73 LDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNER------FHVHSIVLYGQANMIDHAMQTFEEMDKYG--LRQ 144 (401)
Q Consensus 73 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~ 144 (401)
....+-..++-.|....+++..+++.+.+...|+...-.. .|...+.---+-|+-++|+...-.+.+.. +.|
T Consensus 199 L~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 199 LHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred cCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 3455667777788888899999999999886653221111 12222222235677888888777766543 334
Q ss_pred CHHH-----HHHH--HHHHHhcCCHHHHHHHHHhchhhcCCCCCHHh
Q 015726 145 SVDA-----LNAL--LLGCILSKNYEEVKRIFTEFPKVYGIEPNSET 184 (401)
Q Consensus 145 ~~~~-----~~~l--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 184 (401)
|... |.-+ -..|...+..+.|.+.|++.- .++|+..+
T Consensus 279 Dm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaF---eveP~~~s 322 (1226)
T KOG4279|consen 279 DMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAF---EVEPLEYS 322 (1226)
T ss_pred ceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHh---ccCchhhc
Confidence 4322 2211 122344455677777777664 44666543
No 482
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=40.62 E-value=53 Score=28.38 Aligned_cols=66 Identities=9% Similarity=0.054 Sum_probs=30.5
Q ss_pred CHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHH-HHHHHHccCCHHHHHHHHHHHHHCC
Q 015726 286 NLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFM-FTYFLCQGGEYETALKVCRASMAKG 352 (401)
Q Consensus 286 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-li~~~~~~g~~~~a~~~~~~~~~~~ 352 (401)
|+..|...+..-.+.+.+.+...++.+..+.. +.|...|.. .-.-+...++++.+..+|.+....+
T Consensus 106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~kh-P~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N 172 (435)
T COG5191 106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKH-PLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMN 172 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCceeeeeeccchhhhhccHHHHHHHHHhhhccC
Confidence 44444444444444555555555555555432 223333322 1122334556666666665555443
No 483
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=40.42 E-value=3.7e+02 Score=26.39 Aligned_cols=84 Identities=10% Similarity=0.101 Sum_probs=40.8
Q ss_pred HHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-C------------CCHHhHHHHHHHHHc
Q 015726 163 EEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSI-R------------PNATDFGLLLAGFYK 229 (401)
Q Consensus 163 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~------------~~~~~~~~ll~~~~~ 229 (401)
++..+.+....+..|+..+......++.. ..|+...++.++++....|. . .+......++.++..
T Consensus 186 eei~~~L~~i~~~egi~ie~~AL~~La~~--s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL~~ 263 (618)
T PRK14951 186 ETVLEHLTQVLAAENVPAEPQALRLLARA--ARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDALAQ 263 (618)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 44444555444444665555555555542 34666666666665443221 0 122222333333332
Q ss_pred cCChHHHHHHHHHHHHcCCC
Q 015726 230 EHKYEDVGKVLQMMEKCGIA 249 (401)
Q Consensus 230 ~~~~~~a~~~~~~~~~~~~~ 249 (401)
|+...++.+++++.+.|..
T Consensus 264 -~d~~~al~~l~~l~~~G~~ 282 (618)
T PRK14951 264 -GDGRTVVETADELRLNGLS 282 (618)
T ss_pred -CCHHHHHHHHHHHHHcCCC
Confidence 5556666666666555543
No 484
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=40.42 E-value=3.7e+02 Score=26.39 Aligned_cols=89 Identities=12% Similarity=-0.008 Sum_probs=41.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHc--
Q 015726 258 RIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGG-CEPDSYCFFMFTYFLCQ-- 334 (401)
Q Consensus 258 ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~-- 334 (401)
....+.-.|+++.|.+.+-+ ..+...+.+.+-+.+..|.-.+-.+... ..+.... -.|...-+..||..|.+
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F 338 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSF 338 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHH
Confidence 44556667999999998876 2223345555555444443222211111 3232211 11222567888888875
Q ss_pred -cCCHHHHHHHHHHHHHC
Q 015726 335 -GGEYETALKVCRASMAK 351 (401)
Q Consensus 335 -~g~~~~a~~~~~~~~~~ 351 (401)
..+..+|.+++--+...
T Consensus 339 ~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 339 EITDPREALQYLYLICLF 356 (613)
T ss_dssp TTT-HHHHHHHHHGGGGS
T ss_pred hccCHHHHHHHHHHHHHc
Confidence 45788888888766554
No 485
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=40.29 E-value=1.4e+02 Score=21.35 Aligned_cols=80 Identities=14% Similarity=0.081 Sum_probs=40.7
Q ss_pred CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHH
Q 015726 125 NMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSI 204 (401)
Q Consensus 125 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 204 (401)
...++|..+.+.+...+. ....+--+-+..+.+.|++++|+.. -. . ...||...|-.|.. .+.|--+++...
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~--~~-~--~~~pdL~p~~AL~a--~klGL~~~~e~~ 91 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLL--PQ-C--HCYPDLEPWAALCA--WKLGLASALESR 91 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHH--HT-T--S--GGGHHHHHHHH--HHCT-HHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHh--cc-c--CCCccHHHHHHHHH--HhhccHHHHHHH
Confidence 456677777777666542 2222333334456677777777222 11 1 22566666655433 466666677777
Q ss_pred HHHHHhCC
Q 015726 205 LAEMRRKS 212 (401)
Q Consensus 205 ~~~~~~~~ 212 (401)
+.++...|
T Consensus 92 l~rla~~g 99 (116)
T PF09477_consen 92 LTRLASSG 99 (116)
T ss_dssp HHHHCT-S
T ss_pred HHHHHhCC
Confidence 76665554
No 486
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=40.02 E-value=1.8e+02 Score=22.70 Aligned_cols=61 Identities=10% Similarity=0.094 Sum_probs=42.2
Q ss_pred HHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHH
Q 015726 278 MLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYE 339 (401)
Q Consensus 278 ~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 339 (401)
+...|++.+..=. .++..+...++.-.|.++++.+.+.+..++..|.-.-+..+.+.|-+.
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 4566776554333 445555555677789999999999887777777666677777777543
No 487
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=39.98 E-value=68 Score=28.18 Aligned_cols=90 Identities=8% Similarity=-0.095 Sum_probs=42.5
Q ss_pred cCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHH
Q 015726 51 SESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHA 130 (401)
Q Consensus 51 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 130 (401)
..|.++.|++.|...... -++....|..-.+++.+.+++..|+.=+......+... ..-|-.--.+....|++++|
T Consensus 126 n~G~~~~ai~~~t~ai~l--np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Ds--a~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIEL--NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDS--AKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred cCcchhhhhccccccccc--CCchhhhcccccceeeeccCCchhhhhhhhhhccCccc--ccccchhhHHHHHhhchHHH
Confidence 334455666665555433 23344455555556666666666655555444211100 11121122223344566666
Q ss_pred HHHHHHHhhCCCCC
Q 015726 131 MQTFEEMDKYGLRQ 144 (401)
Q Consensus 131 ~~~~~~~~~~~~~~ 144 (401)
...|....+.++.+
T Consensus 202 a~dl~~a~kld~dE 215 (377)
T KOG1308|consen 202 AHDLALACKLDYDE 215 (377)
T ss_pred HHHHHHHHhccccH
Confidence 66666655555443
No 488
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=39.87 E-value=2.1e+02 Score=23.56 Aligned_cols=23 Identities=13% Similarity=0.193 Sum_probs=13.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHH
Q 015726 187 KVIKSFCESGDSSSVYSILAEMR 209 (401)
Q Consensus 187 ~l~~~~~~~~~~~~a~~~~~~~~ 209 (401)
.-|....+.|+++.|++..+.+.
T Consensus 69 ~~Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 69 LQIRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred HHHHHHHHhccHHHHHHHHHHhC
Confidence 34455566666666666666553
No 489
>PRK11619 lytic murein transglycosylase; Provisional
Probab=39.62 E-value=3.9e+02 Score=26.43 Aligned_cols=181 Identities=8% Similarity=-0.052 Sum_probs=93.1
Q ss_pred cCChhHHHHHHHHHHhCC-CCCCH--HhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHH
Q 015726 195 SGDSSSVYSILAEMRRKS-IRPNA--TDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEA 271 (401)
Q Consensus 195 ~~~~~~a~~~~~~~~~~~-~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 271 (401)
..+.+.|...+....... ..+.. ..+..+.......+...++...++...... .+......-+....+.++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 345677777777764332 21111 122233222222221334444444332221 2333344444555567777777
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhC------------CCCCC------Hhh--------H
Q 015726 272 KALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNG------------GCEPD------SYC--------F 325 (401)
Q Consensus 272 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------------~~~~~------~~~--------~ 325 (401)
...+..|-... .-...-..-+.+++...|+.++|..+|+.+... |..++ ... -
T Consensus 332 ~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~ 410 (644)
T PRK11619 332 NTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQRLGEEYPLKIDKAPKPDSALTQGPE 410 (644)
T ss_pred HHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHHHcCCCCCCCCCCCCchhhhhccChH
Confidence 77777764432 223344455666666677777777777765421 11100 000 1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 015726 326 FMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIG 381 (401)
Q Consensus 326 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 381 (401)
..-+..+...|....|...+..+... .+......+.....+.|..+.++....
T Consensus 411 ~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~ 463 (644)
T PRK11619 411 MARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATI 463 (644)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHh
Confidence 12234456678888888888777764 244455556666667777777665543
No 490
>PTZ00131 glycophorin-binding protein; Provisional
Probab=39.30 E-value=2.2e+02 Score=23.52 Aligned_cols=199 Identities=9% Similarity=0.137 Sum_probs=134.6
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhhh--CCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHH----HHH
Q 015726 78 FSIAVSKLSQANHFNAISQLLEELKT--RPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDA----LNA 151 (401)
Q Consensus 78 ~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~ 151 (401)
=..++.+++....+.+-+.+|-++.. .|+......--..++.+|+.--.+.+-+.+|.+++... .|+..+ -..
T Consensus 165 egqimka~aadpeyrkhl~i~y~ilt~tdpnd~tsadpegqimka~aadpeyrkh~~v~~~ilt~t-dpndetsadpegq 243 (413)
T PTZ00131 165 EGQIMKAWAADPEYRKHLEIFYKILTHTDPNDDTSADPEGQIMKAWAADPEYRKHLEVFHKILTHT-DPNDETSADPEGQ 243 (413)
T ss_pred chHHHHHHhcCHHHHHHHHHHHHHHccCCCCCcccCCcchHHHHHHhcCHHHHHHHHHHHHHHccC-CCCccccCCcchH
Confidence 35578888888888888888877772 23222223345678889988888888899998887654 333222 355
Q ss_pred HHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHh----HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH---------
Q 015726 152 LLLGCILSKNYEEVKRIFTEFPKVYGIEPNSET----YNKVIKSFCESGDSSSVYSILAEMRRKSIRPNAT--------- 218 (401)
Q Consensus 152 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------- 218 (401)
++.+|+..-.+.+-+.+|-++... ..|+..+ -..++.+|+....+-+-+++|-+++.. ..|+..
T Consensus 244 imka~aadpey~kh~~i~y~ilth--tdpndetsadpegqimka~aadpey~kh~~i~y~iltn-tdpnde~errnadnk 320 (413)
T PTZ00131 244 IMKAWAADPEYLKHLEIFYKILTH--TDPNDETSADPEGQIMKAWAADPEYLKHLEIFYKILTN-TDPNDEVERRNADNK 320 (413)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHcc--CCCcccccCCcchHHHHHHhcCHHHHHHHHHHHHHHcC-CCCchHhhhcccccc
Confidence 788888777777777777776542 2344332 356788888777777777777776654 233322
Q ss_pred -------hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC----------------chhHHHHHHHHHhcCCHHHHHHHH
Q 015726 219 -------DFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASG----------------VNVYNIRIQSLCKLKRSEEAKALL 275 (401)
Q Consensus 219 -------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~ll~~~~~~~~~~~a~~~~ 275 (401)
--..++.+++..-.+.+-..+|-++.... .|+ ...-..++.+|+.--.+.+-..+|
T Consensus 321 edltsadpegqimka~aadpeyrkh~~i~y~ilt~t-dpnd~~errnadnkedltsadpegqimka~aadpeyrkh~~v~ 399 (413)
T PTZ00131 321 EDLTSADPEGQIMKAWAADPEYRKHLEIFYKILTHT-DPNDDVERRNADNKEDLTSADPEGQIMKAWAADPEYRKHLEVF 399 (413)
T ss_pred cccccCCcchHHHHHHhcChHHHHHHHHHHHHHccC-CCchhhhhhccccccccccCCcchHHHHHHhcCHHHHHHHHHH
Confidence 13468888988888888888887775432 121 112356889999888888999999
Q ss_pred HHHHHC
Q 015726 276 DGMLSR 281 (401)
Q Consensus 276 ~~~~~~ 281 (401)
.++...
T Consensus 400 ~~iltn 405 (413)
T PTZ00131 400 HKILTN 405 (413)
T ss_pred HHHHcC
Confidence 888765
No 491
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=39.18 E-value=83 Score=22.44 Aligned_cols=45 Identities=13% Similarity=0.167 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCC
Q 015726 257 IRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEG 301 (401)
Q Consensus 257 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~ 301 (401)
.++..+...+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
No 492
>PF08870 DUF1832: Domain of unknown function (DUF1832); InterPro: IPR014969 This entry describes the DndE protein encoded by an operon associated with a sulphur-containing modification to DNA []. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=38.92 E-value=91 Score=22.43 Aligned_cols=18 Identities=22% Similarity=0.479 Sum_probs=10.2
Q ss_pred HHHHHHHHhchhhcCCCC
Q 015726 163 EEVKRIFTEFPKVYGIEP 180 (401)
Q Consensus 163 ~~a~~~~~~~~~~~~~~~ 180 (401)
+++.+.+.++.+..|+.|
T Consensus 6 ~~~~~~L~~Lk~~tgi~~ 23 (113)
T PF08870_consen 6 KKAKEQLKKLKRRTGITP 23 (113)
T ss_pred HHHHHHHHHHHHhcCCCc
Confidence 345555566655556666
No 493
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.84 E-value=3.4e+02 Score=25.50 Aligned_cols=217 Identities=12% Similarity=0.025 Sum_probs=0.0
Q ss_pred hHHHHHhhhccCCCCCCc-----cHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCc--------hhHHHHHHHHHH
Q 015726 56 FRILDICCGASLAPESPL-----DRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQN--------ERFHVHSIVLYG 122 (401)
Q Consensus 56 ~~A~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------~~~~~~li~~~~ 122 (401)
++|+...+.....++..+ .......++-+-.-.|++.+|++-...|..--...|. ..+...+...+.
T Consensus 299 De~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~ 378 (629)
T KOG2300|consen 299 DEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSH 378 (629)
T ss_pred HHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhh
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHH---------
Q 015726 123 QANMIDHAMQTFEEMDKYGLRQSVDALNA--LLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKS--------- 191 (401)
Q Consensus 123 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~--------- 191 (401)
..|.++.|..-|....+.--..|...+.. +.-.|.+.|+.+.-.++++.+. ++|..++..-.-.
T Consensus 379 sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~-----p~nt~s~ssq~l~a~~~~v~gl 453 (629)
T KOG2300|consen 379 SVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIG-----PLNTNSLSSQRLEASILYVYGL 453 (629)
T ss_pred hcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcC-----CCCCCcchHHHHHHHHHHHHHH
Q ss_pred -HHhcCChhHHHHHHHHHHhCC-----CCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHc-----CCCCCchhHHHHHH
Q 015726 192 -FCESGDSSSVYSILAEMRRKS-----IRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKC-----GIASGVNVYNIRIQ 260 (401)
Q Consensus 192 -~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~ll~ 260 (401)
....+++.+|...+.+-.+.. ..........+-..+...|+..++.++..-..+. +++.-......+=.
T Consensus 454 faf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~ 533 (629)
T KOG2300|consen 454 FAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTD 533 (629)
T ss_pred HHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHH
Q ss_pred HHHhcCC--HHHHHHHHHH
Q 015726 261 SLCKLKR--SEEAKALLDG 277 (401)
Q Consensus 261 ~~~~~~~--~~~a~~~~~~ 277 (401)
.+...|+ .+...+.|..
T Consensus 534 L~~a~g~~~~~~e~e~~~~ 552 (629)
T KOG2300|consen 534 LYQALGEKGNEMENEAFRK 552 (629)
T ss_pred HHHHhCcchhhHHHHHHHH
No 494
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.82 E-value=3.5e+02 Score=26.40 Aligned_cols=86 Identities=9% Similarity=0.002 Sum_probs=57.0
Q ss_pred cCCChHHHHHHHHHHHhCCCCCC------HhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 015726 299 KEGNLEGAKKLFASMTNGGCEPD------SYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISK 372 (401)
Q Consensus 299 ~~~~~~~a~~~~~~m~~~~~~~~------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 372 (401)
+..++..+.+.|..-... +..| ......+--+|....+.|.|.++++++.+.+ +.++.+--.+..+....|.
T Consensus 366 ~~~~Y~~s~~~y~~Sl~~-i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d-~~~~l~q~~~~~~~~~E~~ 443 (872)
T KOG4814|consen 366 KMEKYVVSIRFYKLSLKD-IISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD-RQSPLCQLLMLQSFLAEDK 443 (872)
T ss_pred HHHHHHHHHHHHHHHHHh-ccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhcc
Confidence 556777787777654432 1111 2234556667778888999999998888764 3344444555666777888
Q ss_pred HHHHHHHHHHHHhc
Q 015726 373 VAEANELIGLMKKR 386 (401)
Q Consensus 373 ~~~a~~~~~~~~~~ 386 (401)
-++|+..+......
T Consensus 444 Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 444 SEEALTCLQKIKSS 457 (872)
T ss_pred hHHHHHHHHHHHhh
Confidence 88888887776655
No 495
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=38.34 E-value=90 Score=25.80 Aligned_cols=55 Identities=15% Similarity=0.260 Sum_probs=41.1
Q ss_pred HhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 015726 297 FGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKG 352 (401)
Q Consensus 297 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 352 (401)
..+.++.+.+.+++.+..+.- +-....|..+...-.+.|+++.|.+-+++..+.+
T Consensus 5 ~~~~~D~~aaaely~qal~la-p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 5 LAESGDAEAAAELYNQALELA-PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred hcccCChHHHHHHHHHHhhcC-chhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 456778888888888877642 3356677777777788888888888888877664
No 496
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=38.22 E-value=1e+02 Score=19.48 Aligned_cols=48 Identities=8% Similarity=0.104 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 015726 111 ERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILS 159 (401)
Q Consensus 111 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 159 (401)
...++.++..+++..-.++++..+.+..+.| ..+..+|.--++.+++.
T Consensus 8 ~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 8 DPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLARE 55 (65)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 3456666677776666777777777777766 34556665555555543
No 497
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=37.96 E-value=4.5e+02 Score=26.66 Aligned_cols=47 Identities=6% Similarity=0.039 Sum_probs=27.5
Q ss_pred HHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 015726 162 YEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRR 210 (401)
Q Consensus 162 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 210 (401)
.++..+.++++.+..|+..+......+... ..|+...|+.++++...
T Consensus 180 ~eeIv~~L~~Il~~EgI~id~eAL~lIA~~--A~GsmRdALsLLdQAia 226 (830)
T PRK07003 180 AGHIVSHLERILGEERIAFEPQALRLLARA--AQGSMRDALSLTDQAIA 226 (830)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHH
Confidence 455556666655555666555555444442 35777777777766543
No 498
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=37.67 E-value=3.3e+02 Score=25.07 Aligned_cols=186 Identities=16% Similarity=0.084 Sum_probs=98.9
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHhhhCC-CCCCchhHHHHHHHHHHhcCChHHH-----HHHHHHHhhCCCCCCHHHHH
Q 015726 77 AFSIAVSKLSQANHFNAISQLLEELKTRP-DLRQNERFHVHSIVLYGQANMIDHA-----MQTFEEMDKYGLRQSVDALN 150 (401)
Q Consensus 77 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a-----~~~~~~~~~~~~~~~~~~~~ 150 (401)
.|..+.+.=-+..--+...++.+.|.... +..+-..-...+|..|++..+.+-. +.++.-+...+ .|....||
T Consensus 57 ~wd~iydLp~Q~~lr~DC~~~~d~l~n~ee~~v~vv~dlES~iTfYCK~Rn~~Y~~d~gWi~lL~pl~~L~-lprsd~fN 135 (669)
T KOG3636|consen 57 DWDQIYDLPNQCALRNDCRKLADGLKNKEEDKVPVVSDLESFITFYCKKRNMDYIKDIGWITLLEPLLLLN-LPRSDEFN 135 (669)
T ss_pred hHHHHhCCchhhHHHHHHHHHHhhcCCchhhccchhHhhhhHhhhhhhccCCcccccccHHHHHHHHHHhc-CCcchhhh
Confidence 45555443333333345666666665211 1122133466778888877654321 23444444444 23444444
Q ss_pred HH---HHHHH-----hcCCHHHHHHHHHhc--------hhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 015726 151 AL---LLGCI-----LSKNYEEVKRIFTEF--------PKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIR 214 (401)
Q Consensus 151 ~l---~~~~~-----~~~~~~~a~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 214 (401)
.. ..-|+ ..|++-...+++-+. .+...+.||..+.|.+...++..-..+-...+|+-..+.+ .
T Consensus 136 ~F~ai~~kYIPkdcrpkg~~Fh~FRLLlqYHdPelc~~LdtkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqa-D 214 (669)
T KOG3636|consen 136 VFFAITTKYIPKDCRPKGQIFHLFRLLLQYHDPELCNHLDTKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQA-D 214 (669)
T ss_pred hhHhhhhcccCCCCCCCCccchHHHHHHHhcCHHHhhhhhccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-C
Confidence 33 22232 233333333333222 1333679999999888888887778888888888887765 3
Q ss_pred CCHHhHHHHHHH--------HHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHh
Q 015726 215 PNATDFGLLLAG--------FYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCK 264 (401)
Q Consensus 215 ~~~~~~~~ll~~--------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 264 (401)
|-.+.+..+|-. -.+....+++.++++.|...--..|+.-+-.+...|+.
T Consensus 215 PF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~L~~eDvpDffsLAqyY~~ 272 (669)
T KOG3636|consen 215 PFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQLSVEDVPDFFSLAQYYSD 272 (669)
T ss_pred ceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchhcccccchhHHHHHHHHhh
Confidence 333333333311 12444567888888887543222344455566665553
No 499
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.64 E-value=2.5e+02 Score=27.29 Aligned_cols=86 Identities=13% Similarity=0.138 Sum_probs=58.1
Q ss_pred hCCCchHHHHHHHHhhhC-CCCCCc---hhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 015726 87 QANHFNAISQLLEELKTR-PDLRQN---ERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNY 162 (401)
Q Consensus 87 ~~~~~~~a~~~~~~~~~~-~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 162 (401)
+..++..+.+.|+.-... +...-+ ......+--+|....+.|.|.+++++..+.+ +.+..+-..+..+....|.-
T Consensus 366 ~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d-~~~~l~q~~~~~~~~~E~~S 444 (872)
T KOG4814|consen 366 KMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD-RQSPLCQLLMLQSFLAEDKS 444 (872)
T ss_pred HHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhcch
Confidence 556778888888765411 111110 2344555667778889999999999998875 44555555566777788888
Q ss_pred HHHHHHHHhch
Q 015726 163 EEVKRIFTEFP 173 (401)
Q Consensus 163 ~~a~~~~~~~~ 173 (401)
++|+.......
T Consensus 445 e~AL~~~~~~~ 455 (872)
T KOG4814|consen 445 EEALTCLQKIK 455 (872)
T ss_pred HHHHHHHHHHH
Confidence 88888876653
No 500
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=37.59 E-value=1.7e+02 Score=21.61 Aligned_cols=111 Identities=14% Similarity=0.136 Sum_probs=63.3
Q ss_pred CChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhc--------
Q 015726 53 SNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQA-------- 124 (401)
Q Consensus 53 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-------- 124 (401)
.+|.-|.+++......+ .+...++.+....---.+.++...+......|. .+....+.-|.+.
T Consensus 3 nNp~IA~~~l~~l~~s~-------~~~~yld~lv~~~~sl~s~EvVn~L~~~~~~p~--efl~~yI~~cI~~ce~~kd~~ 73 (126)
T PF10155_consen 3 NNPNIAIEILVKLINSP-------NFKEYLDVLVSMDMSLHSMEVVNRLTTSFSLPQ--EFLHMYISNCIKSCESIKDKY 73 (126)
T ss_pred CcHHHHHHHHHHHcCCc-------hHHHHHHHHHcCCCchhHHHHHHHHHcCCCCcH--HHHHHHHHHHHHHHHhhcccc
Confidence 45667777777665443 166667888888888888888888875544333 4455554444322
Q ss_pred ---CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 015726 125 ---NMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEF 172 (401)
Q Consensus 125 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 172 (401)
....-.-.+++.+.+.++......+..+-..|.+-.+..+|-++|+-+
T Consensus 74 ~q~R~VRlvcvfl~sLir~~i~~~~~l~~evq~FClefs~i~Ea~~L~kll 124 (126)
T PF10155_consen 74 MQNRLVRLVCVFLQSLIRNKIIDVEDLFIEVQAFCLEFSRIKEASALFKLL 124 (126)
T ss_pred cccchhhhHHHHHHHHHHcCCCchHHHHhhHHHHHHHHccHHHHHHHHHHH
Confidence 112222334455555554444444444555555555666666666544
Done!