BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015728
(401 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FXA4|PUB26_ARATH U-box domain-containing protein 26 OS=Arabidopsis thaliana GN=PUB26
PE=2 SV=1
Length = 421
Score = 166 bits (421), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 125/407 (30%), Positives = 206/407 (50%), Gaps = 23/407 (5%)
Query: 4 DRQMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIV 63
D + IP+ FRCPISLDL +DPVT+ TGQTYDR+SI+ W+A GN TCPVT L D +++
Sbjct: 9 DLGIQIPYHFRCPISLDLMSDPVTISTGQTYDRTSIDSWIAMGNTTCPVTRVALSDFTLI 68
Query: 64 PNHTLRHLINQWLQMGGGQHFD-------PNYLATIDSLSTLKHSLQSHEATLETKLQIV 116
PNHTLR LI +W + P ++ SL + ++ ++ ++ +
Sbjct: 69 PNHTLRRLIQEWCVANRSNGVERIPTPKQPADPISVRSLLSQASAITGTHVSVRSRAAAI 128
Query: 117 QKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVG 176
+++ + R+S + +L++ LF E+ + +L LL +
Sbjct: 129 RRLRGLARDSEKNRVLIAGHNAREILVRILFADIETTSLSSELVSESLALLV---LLHMT 185
Query: 177 ETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLL 236
ETE + ++ S++ L S I+ L+E++++ + ++ +L + D +
Sbjct: 186 ETECEAVASDPSRVGFMTRLLFDSSIEIRVNAAALIEMVLTGA-KSMDLKLIISGSDSIF 244
Query: 237 REIISLVHH---NSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTR---E 290
++ L+ + + A G++A ALC + R + GA LI ++ R E
Sbjct: 245 EGVLDLLKNPISSRRALKIGIKAIFALCLVKQTRHLAISAGAPGILIDRLAADFDRCDTE 304
Query: 291 RSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCD 350
R LA +E L + A + V +VK + RVSD +E A +L+ +C
Sbjct: 305 RGLAT-----VELLCRLPEGCAAFGEHALTVPLMVKTILRVSDR-ATEYAAGALLALCTA 358
Query: 351 SLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAEE 397
+ R+EA AG++TQLLLL+QS C+ R K KA+MLLKLLR W ++
Sbjct: 359 EERCRDEAAAAGLVTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPDD 405
>sp|Q9LT79|PUB25_ARATH U-box domain-containing protein 25 OS=Arabidopsis thaliana GN=PUB25
PE=2 SV=1
Length = 421
Score = 164 bits (414), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 124/407 (30%), Positives = 205/407 (50%), Gaps = 27/407 (6%)
Query: 4 DRQMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAG-NLTCPVTMQTLHDPSI 62
D + IP+ FRCPISL+L DPVT+CTGQTYDR+SIE W++ G N TCPVT L D ++
Sbjct: 9 DLGIQIPYHFRCPISLELMQDPVTVCTGQTYDRASIESWVSIGNNTTCPVTRAPLSDFTL 68
Query: 63 VPNHTLRHLINQWLQMGGGQHFD-------PNYLATIDSLSTLKHSLQSHEATLETKLQI 115
+PNHTLR LI +W + P ++ +L + ++ ++ ++
Sbjct: 69 IPNHTLRRLIQEWCVANRSNGVERIPTPKQPADPTSVRALLSQASAITGTHVSVRSRAAA 128
Query: 116 VQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLV 175
++++ R+S + +L+K LF + S + V ESL+ + L +
Sbjct: 129 LRRLRGFARDSDKNRVLIAAHNATEILIKILFSETTSS------ELVSESLALLVMLPIT 182
Query: 176 GETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRL 235
+ +++ ++ ++E L S + L+E I+S+ ++ +L + + +
Sbjct: 183 EPNQFVSISSDPGRVEFLTRLLFDSSIETRVNAAALIE-IVSTGTKSADLKGSISNSESV 241
Query: 236 LREIISLVHHNSEASDA---GVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTR--- 289
++ L+ + + A G++ ALCS ++ R + GA LI ++ R
Sbjct: 242 FEGVLDLLRNPISSRRALKIGIKTLFALCSVKSTRHIAITAGAPEILIDRLAADFDRCDT 301
Query: 290 ERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICC 349
ER A+A +E L A + V LVK + RVSD +E A +L+ +C
Sbjct: 302 ER-----ALATVELLCRTPEGCAAFGEHALTVPLLVKTILRVSDR-ATEYAAGALLALCT 355
Query: 350 DSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAE 396
+ REEA AGV+ QLLL++QS+C+ R K KA+ LLKLLR W +
Sbjct: 356 AEERWREEAAGAGVVVQLLLMVQSECTERAKKKAQKLLKLLRDSWPD 402
>sp|Q84TG3|PUB23_ARATH E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana GN=PUB23
PE=1 SV=1
Length = 411
Score = 124 bits (311), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 108/411 (26%), Positives = 190/411 (46%), Gaps = 38/411 (9%)
Query: 4 DRQMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNL-TCPVTMQTLHDPSI 62
D ++ IP F CPISL++ DPV + TG TYDR SIEKWL AG +CPVT Q + D +
Sbjct: 7 DEEIEIPPFFLCPISLEIMKDPVIVSTGITYDRDSIEKWLFAGKKNSCPVTKQDITDADL 66
Query: 63 VPNHTLRHLINQWLQMGGGQHFD-------PNYLATIDSLSTLKHSLQSHEATLETKLQI 115
PNHTLR LI W + + P + I+ L ++ S SH E +++
Sbjct: 67 TPNHTLRRLIQSWCTLNASYGVERIPTPRPPICKSEIEKL--IRDSASSH----ENQVKC 120
Query: 116 VQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLV 175
++++ ++ E+ CL G +P L + S +E+L+ + L
Sbjct: 121 LKRLRQIVSENATNKRCLEAAG-VPEFLANIVSNDSENGS-----LTDEALNLLYHL--- 171
Query: 176 GETESLNLLNEESKMESFIV-----LFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLG 230
+E++ +K ++ IV + + G + L++ I+ + + + K
Sbjct: 172 ETSETVLKNLLNNKKDNNIVKSLTKIMQRGMYESRVYATLLLKNILEVADPMQSMTLK-- 229
Query: 231 KDDRLLREIISLVHH--NSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISN-AL 287
+ E++ ++ + +A+ A + +C NR V+ G I+ +I + + +
Sbjct: 230 --PEVFTEVVQILDDRISQKATKAAMHILVNICPWGRNRHKAVEAGVISVIIELLMDESF 287
Query: 288 TRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMI 347
T ER +AM ++ L + +N+ + + K + RVS S+ A+ L+ +
Sbjct: 288 TSERRGPEMAMVVLDLLCQCAEGRAEFLNHGAAIAVVCKKILRVS-QTASDRAVRVLLSV 346
Query: 348 C--CDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAE 396
C + E + GV+ +L L+LQ C +TK KA+ LLKL W +
Sbjct: 347 GRFCATPALLHEMLQLGVVAKLCLVLQVSCGGKTKEKAKELLKLHARVWKD 397
>sp|Q9FLF4|PUB27_ARATH U-box domain-containing protein 27 OS=Arabidopsis thaliana GN=PUB27
PE=2 SV=1
Length = 420
Score = 115 bits (288), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 112/408 (27%), Positives = 194/408 (47%), Gaps = 31/408 (7%)
Query: 2 KEDRQMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPS 61
K+D +T+P FRCPISLD+ PV+LCTG TYDR+SI++WL GN TCP TMQ L +
Sbjct: 3 KDDLCITVPTFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDGGNNTCPATMQILQNKD 62
Query: 62 IVPNHTLRHLINQWLQ-------MGGGQHFDPNYLATIDSLSTLKHSLQSHEATLETKLQ 114
+PN TL+ LI W + + P D++ +K + + +
Sbjct: 63 FIPNRTLQRLIEIWSDSVRRRTCVESAELAAPTRDEIADAIDRVKIEKEERDDR-----E 117
Query: 115 IVQKIHVVLRESPPASNCLI-QLGFLPL---LLKQLFGKAESKFSQVYVQFVEESLSCVQ 170
++ KI RES L + F+ L L+ Q+ + S + VQ + LS ++
Sbjct: 118 VLSKIVRFGRESDDNRGFLAGKDDFVKLLVDLINQVDFETTSAAKSLVVQEAVKILSTIR 177
Query: 171 -KLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKL 229
K+ +L L N ++ + LF+ G+ +K L+E I+ E+K L +
Sbjct: 178 SKVSDRRRFSNLILTNGRDRLSVIVYLFKTGNVELKIDCAGLLE-FIAVDAESKLL---I 233
Query: 230 GKDDRLLREIISLVHHNSEAS--DAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNAL 287
+ D L+ E++ + +S+ S ++ + A+ S + + L++E I + +S++
Sbjct: 234 AERDGLITELMKSISKDSDLSLIESSLSCLIAISSPKRVKLNLLREKLIGDVTKLLSDST 293
Query: 288 TRERSLAAIAMARIEQLLAIENSKDALINNPNG--VYALVKMVFRVSDHEGSENAINSLM 345
+ ++ ++LA + I +G + +VK + +VS +E+A+ L
Sbjct: 294 SSLSVSVTEKCLKLLEILASTKEGRSEICGGDGECLKTVVKKLMKVS-TAATEHAVTVLW 352
Query: 346 MIC--CDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLR 391
+ +A E +T++LLLLQS CS + RML LL+
Sbjct: 353 SVSYLFKEDKALEAVTSVNGVTKILLLLQSNCSPAVR---RMLTDLLK 397
>sp|Q9C9A6|PUB10_ARATH U-box domain-containing protein 10 OS=Arabidopsis thaliana GN=PUB10
PE=2 SV=1
Length = 628
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 104/403 (25%), Positives = 192/403 (47%), Gaps = 42/403 (10%)
Query: 7 MTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNH 66
+TIP F CPISL+L DP + TGQTY+RS I++W+ GNL+CP T Q L + ++ PN+
Sbjct: 241 LTIPEDFLCPISLELMKDPAIVSTGQTYERSFIQRWIDCGNLSCPKTQQKLENFTLTPNY 300
Query: 67 TLRHLINQW-----LQMGGG------QHFDPNYLATIDSLSTLKH---SLQSHEATLETK 112
LR LI+QW ++ GG ++ D ++ +S ++ L S ++E +
Sbjct: 301 VLRSLISQWCTKHNIEQPGGYMNGRTKNSDGSFRDLSGDMSAIRALVCKLSSQ--SIEDR 358
Query: 113 LQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKL 172
V +I + + S + + G +P+L+K L +++ E +++C+ L
Sbjct: 359 RTAVSEIRSLSKRSTDNRILIAEAGAIPVLVKLLTSDGDTETQ-------ENAVTCILNL 411
Query: 173 LLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKD 232
+ + L +L + S +++ GS ++ + +S + E K + G
Sbjct: 412 SIYEHNKELIML--AGAVTSIVLVLRAGSMEARENAAATL-FSLSLADENKIIIGASGA- 467
Query: 233 DRLLREIISLVHHNS--EASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRE 290
+ ++ L+ + S DA F+ LC + N+ V+ G + L+ ++++ + E
Sbjct: 468 ---IMALVDLLQYGSVRGKKDAATALFN-LCIYQGNKGRAVRAGIVKPLVKMLTDS-SSE 522
Query: 291 RSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCD 350
R +A A+ + L + + +K A++ N + L+ + ENA L+ +C
Sbjct: 523 R-MADEALTILSVLASNQVAKTAIL-RANAIPPLID-CLQKDQPRNRENAAAILLCLC-- 577
Query: 351 SLQAREEAICAGVLTQL--LLLLQSQCSNRTKTKARMLLKLLR 391
+ E+ I G L + L+ L + R K KA LL+LLR
Sbjct: 578 -KRDTEKLISIGRLGAVVPLMELSRDGTERAKRKANSLLELLR 619
>sp|Q058P4|PUB30_ARATH U-box domain-containing protein 30 OS=Arabidopsis thaliana GN=PUB30
PE=2 SV=1
Length = 448
Score = 106 bits (264), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 111/407 (27%), Positives = 183/407 (44%), Gaps = 53/407 (13%)
Query: 1 MKEDRQMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDP 60
+KE IP +F CPISL+ DPVTLCTGQTY+R +I KW G+LTCP TMQ L D
Sbjct: 56 IKELDLQDIPSVFICPISLEPMQDPVTLCTGQTYERLNIHKWFNLGHLTCPTTMQELWDD 115
Query: 61 SIVPNHTLRHLINQWLQMGGGQHFDPNYL-----------ATIDSLSTLKHSLQSHEATL 109
++ PN TL HLI W F Y+ I+ L TLK +
Sbjct: 116 TVTPNKTLHHLIYTW--------FSQKYVLMKKRSEDVQGRAIEILGTLKKAKGQARVHA 167
Query: 110 ETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCV 169
++L+ + H++ R++ +++ G + ++ L G S V + SL
Sbjct: 168 LSELKQIVIAHLMARKT------VVEEGGVS-VISSLLGPFTSHAVGSEVVAILVSLDL- 219
Query: 170 QKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKL 229
+++S + L + +K+ + + GS K L+ ++ E K +L
Sbjct: 220 -------DSDSKSGLMQPAKVSLIVDMLNDGSNETKINCARLIRGLV----EEKGFRAEL 268
Query: 230 GKDDRLLREIISLV---HHNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNA 286
LL ++ LV H + S A +R + + R +V GA+ L+ + +
Sbjct: 269 VSSHSLLVGLMRLVKDKRHRNGVSPA-LRLLKPISVHKQVRSLMVSIGAVPQLVDILPSL 327
Query: 287 LTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMM 346
+ +A+ ++ L + A+ ++ N + V+++ RVS E N S++
Sbjct: 328 ---DPECLELALFVLDALCTDVEGRVAVKDSANTIPYTVRVLMRVS--ENCTNYALSILW 382
Query: 347 ICCDSLQAREE----AICAGVLTQLLLLLQSQCSNRTKTKARMLLKL 389
C A EE A+ G+ +LLL++QS C K ++ LLKL
Sbjct: 383 SVCK--LAPEECSPLAVEVGLAAKLLLVIQSGCDAALKQRSAELLKL 427
>sp|Q9LSA6|PUB29_ARATH U-box domain-containing protein 29 OS=Arabidopsis thaliana GN=PUB29
PE=1 SV=1
Length = 415
Score = 105 bits (263), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 118/428 (27%), Positives = 196/428 (45%), Gaps = 84/428 (19%)
Query: 7 MTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNH 66
+T+P F+CPISLD+ PV+LCTG TYDR+SI++WL GN TCP TMQ L VPN
Sbjct: 10 ITVPSFFKCPISLDVMRSPVSLCTGVTYDRASIQRWLDGGNNTCPATMQLLKTKDFVPNL 69
Query: 67 TLRHLINQWLQMGGGQH------FDP---NYLATIDSLSTLKHSLQSHEATLETKLQIVQ 117
TL+ LIN W G +H +P + T + ++ L L S LE ++IV+
Sbjct: 70 TLQRLINIWSDSIGRRHNGDSPVLNPPSGREVPTKEEVNVLLERLMS----LENLMKIVR 125
Query: 118 KIHVVLRESPPASNCLI-QLGFLPLLLKQLFGKAESKFSQVY--------VQFVEESLS- 167
+++S L ++ F+P+L+ + K ++K V ++ E LS
Sbjct: 126 ----FVKDSDSNREFLSKKMEFVPMLVDIIRTK-KTKIELVIMAIRILDSIKVDRERLSN 180
Query: 168 ---------CVQKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISS 218
C+ +LL ++ N ESK+ES VL + S K +L
Sbjct: 181 LMLANDGGDCLTAILL-----AIQRGNLESKIESVRVL-DWISFDAKSKLM--------- 225
Query: 219 SHETKELCCKLGKDDRLLREIISLVHHNSEASD-----AGVRAFSALCSTETNRKTLVQE 273
+ + D +L E++ + +E+SD A + + ++ R L+
Sbjct: 226 ----------IAERDGVLTEMMKSISI-TESSDPSLIEASLSFLITISKSKRVRSKLIAA 274
Query: 274 GAING-----LIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNG--VYALVK 326
AI L ++N E+SL +E L + + + + NG V +VK
Sbjct: 275 KAITKIKDILLTETLTNVAVTEKSLKL-----LETLSSKREGRLEICGDDNGRCVEGVVK 329
Query: 327 MVFRVSDHEGSENAINSLMMICC---DSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKA 383
+ +VS +E+A+ L +C + E + +T+LL+++QS CS + A
Sbjct: 330 KLLKVS-TTATEHAVTILWCLCYVFREDKTVEETVERSNGVTKLLVVIQSNCSAMVRQMA 388
Query: 384 RMLLKLLR 391
+ L+K+L+
Sbjct: 389 KDLIKVLK 396
>sp|Q9C7R6|PUB17_ARATH U-box domain-containing protein 17 OS=Arabidopsis thaliana GN=PUB17
PE=2 SV=1
Length = 729
Score = 105 bits (261), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 101/407 (24%), Positives = 184/407 (45%), Gaps = 35/407 (8%)
Query: 4 DRQMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIV 63
D +T+P F CPISLDL TDPV + TGQTYDR+SI +W+ G+ TCP T Q L D IV
Sbjct: 300 DTFITVPKDFVCPISLDLMTDPVIISTGQTYDRNSIARWIEEGHCTCPKTGQMLMDSRIV 359
Query: 64 PNHTLRHLINQWLQMGGGQH---FDPNYLATIDSLSTLKHSLQSHEATLETKLQIV---- 116
PN L++LI QW G + F + + S K ++++++AT+ ++ +
Sbjct: 360 PNRALKNLIVQWCTASGISYESEFTDSPNESFASALPTKAAVEANKATVSILIKYLADGS 419
Query: 117 --------QKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSC 168
++I ++ + + + G +P L + L +E+ +Q E S++
Sbjct: 420 QAAQTVAAREIRLLAKTGKENRAYIAEAGAIPHLCRLL--TSENAIAQ------ENSVTA 471
Query: 169 VQKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCK 228
+ L + + +S ++ E +ES + + G + +S+ HE K+ +
Sbjct: 472 MLNLSIYEKNKS-RIMEEGDCLESIVSVLVSGLTVEAQENAAATLFSLSAVHEYKK---R 527
Query: 229 LGKDDRLLREIISLVHHNS-EASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNAL 287
+ D+ + + L+ + + V A L + N +++ G ++ L+ + N
Sbjct: 528 IAIVDQCVEALALLLQNGTPRGKKDAVTALYNLSTHPDNCSRMIEGGGVSSLVGALKNEG 587
Query: 288 TRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMI 347
A + Q L E A+ + V L+ M+ R G ENA+ +L+ +
Sbjct: 588 V-AEEAAGALALLVRQSLGAE----AIGKEDSAVAGLMGMM-RCGTPRGKENAVAALLEL 641
Query: 348 CCDSLQA-REEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSK 393
C A E+ + A + LL L + R + KA L ++ + +
Sbjct: 642 CRSGGAAVAEKVLRAPAIAGLLQTLLFTGTKRARRKAASLARVFQRR 688
>sp|Q8GUG9|PUB11_ARATH U-box domain-containing protein 11 OS=Arabidopsis thaliana GN=PUB11
PE=2 SV=2
Length = 612
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 109/413 (26%), Positives = 190/413 (46%), Gaps = 61/413 (14%)
Query: 2 KEDRQMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPS 61
K+ ++TIP F CP+SL+L DPV + TGQTY+R+ I++W+ GNLTCP T Q L + +
Sbjct: 234 KKSDKLTIPVDFLCPVSLELMKDPVIVATGQTYERAYIQRWIDCGNLTCPKTQQKLENFT 293
Query: 62 IVPNHTLRHLINQWL------QMGGGQHFDPNYLATIDSLSTLKHSLQSHEATLETKLQI 115
+ PN+ LR LI++W Q G + + + L L S + E +
Sbjct: 294 LTPNYVLRSLISRWCAEHNIEQPAGYINGRTKNSGDMSVIRALVQRLSSR--STEDRRNA 351
Query: 116 VQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLV 175
V +I + + S + + G +P+L+ L + V Q E +++CV
Sbjct: 352 VSEIRSLSKRSTDNRILIAEAGAIPVLVNLLTSE------DVATQ--ENAITCV------ 397
Query: 176 GETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKE------LCCKL 229
LNL E+ E +++F SI V+V+ + + E +E L
Sbjct: 398 -----LNLSIYENNKE--LIMFAGAVTSI-------VQVLRAGTMEARENAAATLFSLSL 443
Query: 230 GKDDRL-------LREIISLVHHNSE--ASDAGVRAFSALCSTETNRKTLVQEGAINGLI 280
++++ + ++ L+ + + DA F+ LC N+ V+ G + L+
Sbjct: 444 ADENKIIIGGSGAIPALVDLLENGTPRGKKDAATALFN-LCIYHGNKGRAVRAGIVTALV 502
Query: 281 AYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENA 340
+S++ TR R + A+ + L +++K A++ N + AL+ + + ENA
Sbjct: 503 KMLSDS-TRHR-MVDEALTILSVLANNQDAKSAIV-KANTLPALIG-ILQTDQTRNRENA 558
Query: 341 INSLMMICCDSLQAREEAICAGVLTQL--LLLLQSQCSNRTKTKARMLLKLLR 391
L+ +C + E+ I G L + L+ L + R K KA LL+LLR
Sbjct: 559 AAILLSLC---KRDTEKLITIGRLGAVVPLMDLSKNGTERGKRKAISLLELLR 608
>sp|Q9C8D1|PUB20_ARATH U-box domain-containing protein 20 OS=Arabidopsis thaliana GN=PUB20
PE=2 SV=1
Length = 431
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 94/396 (23%), Positives = 182/396 (45%), Gaps = 26/396 (6%)
Query: 3 EDRQMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSI 62
E+ ++TIP F+CPIS +L DPV + +G TYDR +IEKW +G TCPVT L
Sbjct: 27 EEVEITIPSQFQCPISYELMKDPVIIASGITYDRENIEKWFESGYQTCPVTNTVLTSLEQ 86
Query: 63 VPNHTLRHLINQWL--QMGGGQHFDPNYLATIDS--LSTL--KHSLQSHEATLETKLQIV 116
+PNHT+R +I W +GGG P + S +S + + S + +++V
Sbjct: 87 IPNHTIRRMIQGWCGSSLGGGIERIPTPRVPVTSHQVSEICERLSAATRRGDYAACMEMV 146
Query: 117 QKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVG 176
K+ + +ES C+ + G +L +E+ + + +EE++S + +L +G
Sbjct: 147 TKMTRLGKESERNRKCVKENGAGLVLCVCFDAFSENANASL---LLEETVSVLTWMLPIG 203
Query: 177 ETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLL 236
E + L S + L +G + + L+E+ ++ H L K + +
Sbjct: 204 -LEGQSKLTTTSSFNRLVELLRNGDQNAAFLIKELLELNVTHVH-------ALTKINGVQ 255
Query: 237 REIISLVHHNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAI 296
+ ++ +S ++ + + + + ++ +N + + ++ E S+
Sbjct: 256 EAFMKSINRDSTCVNSLISIHHMILTNQETVSRFLELDLVNITVEMLVDS---ENSVCEK 312
Query: 297 AMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAR- 355
A+ + + + ++ + N + LVK + ++S+ + + S+M C S
Sbjct: 313 ALTVLNVICETKEGREKVRRNKLVIPILVKKILKISEKKD----LVSVMWKVCKSGDGSE 368
Query: 356 -EEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLL 390
EEA+ G +L+++LQ C TK K LLK++
Sbjct: 369 VEEALRLGAFKKLVVMLQVGCGEGTKEKVTELLKMM 404
>sp|Q9LXE3|PUB28_ARATH U-box domain-containing protein 28 OS=Arabidopsis thaliana GN=PUB28
PE=1 SV=1
Length = 409
Score = 103 bits (256), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 118/408 (28%), Positives = 192/408 (47%), Gaps = 52/408 (12%)
Query: 8 TIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHT 67
T+P F+CPISLD+ PV+L TG TYDR SI++WL GN TCP TMQ L + VPN T
Sbjct: 10 TVPCFFKCPISLDVMKSPVSLSTGVTYDRVSIQRWLDDGNNTCPATMQILQNKEFVPNLT 69
Query: 68 LRHLINQWLQMGGGQHFDPNYLATIDSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESP 127
L LI+ W DS++ S +S E+ T+ +I I E+
Sbjct: 70 LHRLIDHW----------------SDSINRRADS-ESPESDTPTRDEINAAIERFRIEND 112
Query: 128 PASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQ-KLLLVGET-------- 178
S L + L GK + F + V + +S + +LLLVGE
Sbjct: 113 ARSKILRFARESDENREFLAGKDD--FVAMLVDLISDSRNFSDSQLLLVGEAVKILSMIR 170
Query: 179 ---------ESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKL 229
+L L N + SF +L + G+ +K C V I+ E+K + +
Sbjct: 171 RKIFDRRRLSNLILTNGGDCLTSFFLLIKRGNPKLKID-CSAVLEFIAVDAESKLI---I 226
Query: 230 GKDDRLLREIISLVHHNSEAS--DAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNAL 287
K + L+ EII L+ +S++S +A + A+ S++ + L++E L+ +++ L
Sbjct: 227 AKGEGLVTEIIKLISSDSDSSLIEANLSLLIAIASSKRVKLALIREK----LVTKLTSLL 282
Query: 288 TRERSLAAIAMARIEQLLAIENSKDALINNPNGV--YALVKMVFRVSDHEGSENAINSLM 345
T + ++ ++ L AI + K+ +GV +V + +VS +E+A+ L
Sbjct: 283 TDPTTSVSVTEKCLKLLEAISSCKEGRSEICDGVCVETVVNKLMKVS-TAATEHAVTVLW 341
Query: 346 MIC--CDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLR 391
+C +A++ I +T++LLLLQS CS + LLK+ +
Sbjct: 342 SVCYLFKEKKAQDAVIRINGVTKILLLLQSNCSLTVRHMLTDLLKVFK 389
>sp|Q6EUK7|PUB04_ORYSJ U-box domain-containing protein 4 OS=Oryza sativa subsp. japonica
GN=PUB4 PE=2 SV=1
Length = 728
Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 99/407 (24%), Positives = 181/407 (44%), Gaps = 40/407 (9%)
Query: 3 EDRQMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSI 62
+D ++P F CPISLDL DPV TGQTYDR SI +W+ G+ TCP + QTL D +
Sbjct: 291 DDTSFSVPKEFSCPISLDLMRDPVVASTGQTYDRPSIIQWIEEGHSTCPNSGQTLADHRL 350
Query: 63 VPNHTLRHLINQWLQMGGGQHFDP----NYLATIDSLSTLKHSLQSHEATLETKLQIVQ- 117
VPN LR LI+QW + G Q+ P + + + + ++++++AT +++++
Sbjct: 351 VPNRALRSLISQWCGVYGLQYDSPESNEGMAECVAASCSSRAAMEANKATARILVRMLED 410
Query: 118 -----------KIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESL 166
+I ++ + + LG +PLL + L + +Q E ++
Sbjct: 411 GSENVKAVAAKEIRLLAKTGKQNRAFIADLGAIPLLCRLLL--SNDWMAQ------ENAV 462
Query: 167 SCVQKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELC 226
+ + L + E ++ +E + + + ++G + K +S H K+L
Sbjct: 463 TALLNLSIF-EPNKGRIMEQEGCLRLIVGVLQNGWTTEAKENAAATLFSLSVVHNFKKL- 520
Query: 227 CKLGKDDRLLREIIS-LVHHNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISN 285
+ + + E+ S L S V A L + + +++ A+ LI + N
Sbjct: 521 --IMNEPGAVEELASMLTKGTSRGKKDAVMALFNLSTHPESSARMLESCAVVALIQSLRN 578
Query: 286 ALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLM 345
E + A+A LL + S L+ + V + + R +G ENA+++L
Sbjct: 579 DTVSEEAAGALA------LLMKQPSIVHLVGSSETVITSLVGLMRRGTPKGKENAVSALY 632
Query: 346 MIC---CDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKL 389
IC +L R I L ++ + + R K KA +++K+
Sbjct: 633 EICRRGGSALVQRVAKIPG--LNTVIQTITLNGTKRAKKKASLIVKM 677
>sp|Q0IMG9|SL11_ORYSJ E3 ubiquitin-protein ligase SPL11 OS=Oryza sativa subsp. japonica
GN=SPL11 PE=1 SV=2
Length = 694
Score = 100 bits (248), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 56/78 (71%)
Query: 3 EDRQMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSI 62
+ R +TIP FRCPISL+L DPV + TGQTY+R+ IEKW+A+G+ TCP T Q + ++
Sbjct: 267 DSRPITIPDEFRCPISLELMKDPVIVSTGQTYERACIEKWIASGHHTCPTTQQKMSTSAL 326
Query: 63 VPNHTLRHLINQWLQMGG 80
PN+ LR LI+QW + G
Sbjct: 327 TPNYVLRSLISQWCETNG 344
>sp|A2ZLU6|SL11_ORYSI Protein spotted leaf 11 OS=Oryza sativa subsp. indica GN=SPL11 PE=1
SV=2
Length = 694
Score = 100 bits (248), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 56/78 (71%)
Query: 3 EDRQMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSI 62
+ R +TIP FRCPISL+L DPV + TGQTY+R+ IEKW+A+G+ TCP T Q + ++
Sbjct: 267 DSRPITIPDEFRCPISLELMKDPVIVSTGQTYERACIEKWIASGHHTCPTTQQKMSTSAL 326
Query: 63 VPNHTLRHLINQWLQMGG 80
PN+ LR LI+QW + G
Sbjct: 327 TPNYVLRSLISQWCETNG 344
>sp|Q5VRH9|PUB12_ORYSJ U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica
GN=PUB12 PE=2 SV=1
Length = 611
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 110/429 (25%), Positives = 181/429 (42%), Gaps = 79/429 (18%)
Query: 5 RQMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVP 64
R IP FRCPISL+L DPV + +GQTY+RS I+KWL +G+ TCP T Q L S+ P
Sbjct: 224 RSPIIPDEFRCPISLELMQDPVIVSSGQTYERSCIQKWLDSGHKTCPKTQQPLSHTSLTP 283
Query: 65 NHTLRHLINQWLQMGG---------------GQHFDPNYLATIDSLSTLKHSLQSHEATL 109
N L+ LI+QW + G + D ++ + ++ L+ Q +
Sbjct: 284 NFVLKSLISQWCEANGIELPKNKQNSRDKKAAKSSDYDHAGLVSLMNRLRSGNQDEQRAA 343
Query: 110 ETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCV 169
+++++ K +V R C+ + G +PLL+ L ++ + + V
Sbjct: 344 AGEIRLLAKRNVNNRI------CIAEAGAIPLLV-NLLSSSDPRTQEHAV---------- 386
Query: 170 QKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKE----- 224
T LNL E+ S + S +I K +VEV+ + S ET+E
Sbjct: 387 --------TALLNLSIHENNKASIV-----DSHAIPK----IVEVLKTGSMETRENAAAT 429
Query: 225 -LCCKLGKDDRL-------LREIISLVHHNSE--ASDAGVRAFSALCSTETNRKTLVQEG 274
+ ++++ + +I+L+ S DA F+ LC + N+ V+ G
Sbjct: 430 LFSLSVVDENKVTIGAAGAIPPLINLLCDGSPRGKKDAATAIFN-LCIYQGNKVRAVKAG 488
Query: 275 AI----NGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFR 330
+ N L+ + SL +I E + I S+ + LV+ V +
Sbjct: 489 IVIHLMNFLVDPTGGMIDEALSLLSILAGNPEGKIVIARSEP--------IPPLVE-VIK 539
Query: 331 VSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLL 390
ENA L ++C + A AGV L L ++R K KA +L+L+
Sbjct: 540 TGSPRNRENAAAILWLLCSADTEQTLAAKAAGV-EDALKELSETGTDRAKRKASSILELM 598
Query: 391 RSKWAEELK 399
+ LK
Sbjct: 599 HQANEDSLK 607
>sp|Q9ZV31|PUB12_ARATH U-box domain-containing protein 12 OS=Arabidopsis thaliana GN=PUB12
PE=2 SV=1
Length = 654
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/79 (54%), Positives = 54/79 (68%), Gaps = 1/79 (1%)
Query: 3 EDRQMTIP-HLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPS 61
+DR M IP FRCPISL+L TDPV + +GQTY+R I+KWL G+LTCP T +TL
Sbjct: 249 DDRDMLIPPEEFRCPISLELMTDPVIVSSGQTYERECIKKWLEGGHLTCPKTQETLTSDI 308
Query: 62 IVPNHTLRHLINQWLQMGG 80
+ PN+ LR LI QW + G
Sbjct: 309 MTPNYVLRSLIAQWCESNG 327
>sp|Q681N2|PUB15_ARATH U-box domain-containing protein 15 OS=Arabidopsis thaliana GN=PUB15
PE=2 SV=2
Length = 660
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 105/203 (51%), Gaps = 15/203 (7%)
Query: 7 MTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNH 66
+ +PH F CPI+L++ DPV + TGQTY++ SI+KW AG+ TCP T Q L S+ PN
Sbjct: 288 LILPHEFLCPITLEIMLDPVIIATGQTYEKESIQKWFDAGHKTCPKTRQELDHLSLAPNF 347
Query: 67 TLRHLINQWLQMGG----GQHFDPNYL-ATIDSLSTLKHSLQSHEATLETKLQIVQKIHV 121
L++LI QW + + P+ D +S L +L S + LE + + V+++ +
Sbjct: 348 ALKNLIMQWCEKNNFKIPEKEVSPDSQNEQKDEVSLLVEALSSSQ--LEEQRRSVKQMRL 405
Query: 122 VLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYV-QFVEESLSCVQKLLLVGETES 180
+ RE+P + G +PLL+ QL +S + V + S+ V K L+ E
Sbjct: 406 LARENPENRVLIANAGAIPLLV-QLLSYPDSGIQENAVTTLLNLSIDEVNKKLISNEGAI 464
Query: 181 LNLL------NEESKMESFIVLF 197
N++ N E++ S LF
Sbjct: 465 PNIIEILENGNREARENSAAALF 487
>sp|Q8VZ40|PUB14_ARATH U-box domain-containing protein 14 OS=Arabidopsis thaliana GN=PUB14
PE=1 SV=1
Length = 632
Score = 96.7 bits (239), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 107/422 (25%), Positives = 177/422 (41%), Gaps = 79/422 (18%)
Query: 5 RQMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVP 64
R IP FRCPISL+L DPV + TGQTY+RSSI+KWL AG+ TCP + +TL + P
Sbjct: 244 RSPVIPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTP 303
Query: 65 NHTLRHLINQW-----------------LQMGGGQHFDPNYLATIDSLSTLKHSLQSHEA 107
N+ L+ LI W ++GG D + + L L + +
Sbjct: 304 NYVLKSLIALWCESNGIELPQNQGSCRTTKIGGSSSSDCDRTFVLSLLEKLANGTTEQQR 363
Query: 108 TLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLS 167
+L+++ K +V R C+ + G +PLL+ +L + + + V
Sbjct: 364 AAAGELRLLAKRNVDNR------VCIAEAGAIPLLV-ELLSSPDPRTQEHSV-------- 408
Query: 168 CVQKLLLVGETESLNL-LNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELC 226
T LNL +NE +K G+ + +VEV+ + S E +E
Sbjct: 409 ----------TALLNLSINEGNK----------GAIVDAGAITDIVEVLKNGSMEARENA 448
Query: 227 CKLGKDDRLLRE-------------IISLVHHNSEAS--DAGVRAFSALCSTETNRKTLV 271
++ E +ISL+ + DA F+ LC + N+ V
Sbjct: 449 AATLFSLSVIDENKVAIGAAGAIQALISLLEEGTRRGKKDAATAIFN-LCIYQGNKSRAV 507
Query: 272 QEGAINGLIAYISNALTR--ERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVF 329
+ G ++ L + +A + +LA +A +L+ I + LV+++
Sbjct: 508 KGGIVDPLTRLLKDAGGGMVDEALAILA------ILSTNQEGKTAIAEAESIPVLVEII- 560
Query: 330 RVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKL 389
R ENA L +C +++ A G L L ++ ++R K KA LL+L
Sbjct: 561 RTGSPRNRENAAAILWYLCIGNIERLNVAREVGADVALKELTEN-GTDRAKRKAASLLEL 619
Query: 390 LR 391
++
Sbjct: 620 IQ 621
>sp|Q9SRT0|PUB9_ARATH U-box domain-containing protein 9 OS=Arabidopsis thaliana GN=PUB9
PE=1 SV=1
Length = 460
Score = 96.3 bits (238), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 105/401 (26%), Positives = 178/401 (44%), Gaps = 43/401 (10%)
Query: 10 PHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLR 69
P FRCP+S +L DPV L +GQTYD+ I+KWL++GN TCP T Q L ++ PN +R
Sbjct: 75 PEEFRCPLSNELMRDPVVLASGQTYDKLFIQKWLSSGNRTCPKTQQVLPHTALTPNLLIR 134
Query: 70 HLINQWLQMGG---GQHFDPNYLATIDSLSTLKHSLQSHEATLETKLQIVQKIHVVLRES 126
+I++W + G + PN + ++++ +S + L V + L++
Sbjct: 135 EMISKWCKKNGLETKSQYHPNLVNEDETVT------RSDREIFNSLLCKVSSSN--LQDQ 186
Query: 127 PPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFV-----EESL--SCVQKLLLVGETE 179
A+ L L + LFG++ + +++ + +E L V LL + +
Sbjct: 187 KSAAKELRLLTRKGTEFRALFGESPDEITRLVNPLLHGSNPDEKLQEDVVTTLLNISIHD 246
Query: 180 SLN--LLNEESKMESFIV-LFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLL 236
N L+ E + ++ G+ + + + +S+ K L K G +L
Sbjct: 247 DSNKKLVCENPNVIPLLIDALRRGTVATRSNAAAAI-FTLSALDSNKVLIGKSG----IL 301
Query: 237 REIISLVHHNSEAS--DAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLA 294
+ +I L+ + + D F+ LC NR V++GA+ L ISN L + LA
Sbjct: 302 KPLIDLLEEGNPLAIKDVAAAIFT-LCIAHENRSRAVRDGAVRVLGKKISNGLYVDELLA 360
Query: 295 AIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSL-- 352
+AM + A+E + GV L+K+ ENAI L IC
Sbjct: 361 ILAML-VTHWKAVEE-----LGELGGVSWLLKITRESECKRNKENAIVILHTICFSDRTK 414
Query: 353 --QAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLR 391
+ +EE G +T+ L + ++R + KA +L LR
Sbjct: 415 WKEIKEEENAHGTITK----LSREGTSRAQRKANGILDRLR 451
>sp|Q9SNC6|PUB13_ARATH U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13
PE=1 SV=1
Length = 660
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 97/406 (23%), Positives = 179/406 (44%), Gaps = 39/406 (9%)
Query: 9 IPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTL 68
IP FRCPISL++ DPV + +GQTY+R+ IEKW+ G+ TCP T Q L ++ PN+ L
Sbjct: 256 IPDDFRCPISLEMMRDPVIVSSGQTYERTCIEKWIEGGHSTCPKTQQALTSTTLTPNYVL 315
Query: 69 RHLINQWLQMGGGQHFDPNYLATIDSLSTLKHSLQSHE----------ATLETKLQIVQK 118
R LI QW + + P +S+ ++++ E + +
Sbjct: 316 RSLIAQWCEANDIEPPKPPSSLRPRKVSSFSSPAEANKIEDLMWRLAYGNPEDQRSAAGE 375
Query: 119 IHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGET 178
I ++ + + + + G +PLL+ L +S+ E S++ + L +
Sbjct: 376 IRLLAKRNADNRVAIAEAGAIPLLVG-LLSTPDSRIQ-------EHSVTALLNLSICENN 427
Query: 179 ESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLRE 238
+ + + + + + GS ++ + +S E K LG +
Sbjct: 428 K--GAIVSAGAIPGIVQVLKKGSMEARENAAATL-FSLSVIDENKVTIGALGA----IPP 480
Query: 239 IISLVHHNSE--ASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTR--ERSLA 294
++ L++ ++ DA F+ LC + N+ ++ G I L ++ + + +LA
Sbjct: 481 LVVLLNEGTQRGKKDAATALFN-LCIYQGNKGKAIRAGVIPTLTRLLTEPGSGMVDEALA 539
Query: 295 AIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQA 354
+A +L+ A+I + + V +LV+ + R ENA L+ +C Q
Sbjct: 540 ILA------ILSSHPEGKAIIGSSDAVPSLVEFI-RTGSPRNRENAAAVLVHLCSGDPQH 592
Query: 355 REEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAEELKH 400
EA G++ L+ L ++R K KA LL+ + S+ AE+ K
Sbjct: 593 LVEAQKLGLMGP-LIDLAGNGTDRGKRKAAQLLERI-SRLAEQQKE 636
>sp|Q9FHN9|PUB31_ARATH U-box domain-containing protein 31 OS=Arabidopsis thaliana GN=PUB31
PE=2 SV=1
Length = 444
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 108/401 (26%), Positives = 180/401 (44%), Gaps = 57/401 (14%)
Query: 9 IPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTL 68
IP +F CPISL+ DPVTLCTGQTY+RS+I KW G+ TCP TMQ L D + PN TL
Sbjct: 60 IPSVFICPISLEPMQDPVTLCTGQTYERSNILKWFNIGHCTCPTTMQELWDDLVTPNKTL 119
Query: 69 RHLINQWLQMGGGQHFDPNYL-----------ATIDSLSTLKHSLQSHEATLETKLQIVQ 117
LI W F Y+ I+ L TL+ +A + K+ +
Sbjct: 120 HQLIYTW--------FSQKYVLMKKRSEDVQGRAIEILGTLR------KAKGKAKVHALS 165
Query: 118 KIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGE 177
++ V+ A ++ G + ++ L S F+ V E+++ + L L +
Sbjct: 166 ELKQVVMAHAIAKKTVVDEGGVFVISSLL-----SPFTSHAVG--SEAIAILVNLEL--D 216
Query: 178 TESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLR 237
++S L + +++ + + GS K L+ ++ E K +L LL
Sbjct: 217 SDSKAGLMQPARVSLMVDMLNDGSIETKINCARLIGRLV----EEKGFRAELVSSHSLLV 272
Query: 238 EIISLVHHNSEASDAGVRAFSALCSTETN---RKTLVQEGAINGLIAYISNALTRERSLA 294
++ LV + A + L S + R LV+ GA+ L+ + +
Sbjct: 273 GLMRLVKDRRRRNGVS-PALTLLKSVSVHKQVRNLLVRIGAVPQLVDVLP---CLDVECL 328
Query: 295 AIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMIC------ 348
A+ ++ L + AL ++ N + V+++ +VS+ + + AI+ L +C
Sbjct: 329 ESALFVLDSLCLESEGRIALKDSVNTIPHTVRLLMKVSE-KCTNYAISILWSVCKLASEE 387
Query: 349 CDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKL 389
C SL A+ G+ +LLL++QS C K ++ LLKL
Sbjct: 388 CSSL-----AVEVGLAAKLLLVIQSGCDPALKQRSAELLKL 423
>sp|Q5PNY6|PUB21_ARATH U-box domain-containing protein 21 OS=Arabidopsis thaliana
GN=PUB21 PE=2 SV=1
Length = 435
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 49/72 (68%)
Query: 4 DRQMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIV 63
+ ++TIP F+CPIS+DL DPV + TG TYDR SIE W+ +GN TCPVT L +
Sbjct: 26 ESEITIPPEFQCPISIDLMKDPVIISTGITYDRVSIETWINSGNKTCPVTNTVLTTFDQI 85
Query: 64 PNHTLRHLINQW 75
PNHT+R +I W
Sbjct: 86 PNHTIRKMIQGW 97
>sp|Q9LZW3|PUB16_ARATH U-box domain-containing protein 16 OS=Arabidopsis thaliana GN=PUB16
PE=2 SV=1
Length = 674
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 75/145 (51%), Gaps = 7/145 (4%)
Query: 9 IPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTL 68
IP FRCPI+L+L DPV + TGQTYDR SI+ W+ +G+ TCP T Q L S+VPN L
Sbjct: 274 IPADFRCPITLELMRDPVVVATGQTYDRESIDLWIQSGHNTCPKTGQVLKHTSLVPNRAL 333
Query: 69 RHLINQW-------LQMGGGQHFDPNYLATIDSLSTLKHSLQSHEATLETKLQIVQKIHV 121
++LI W ++ G +P + + S + ++ +V ++
Sbjct: 334 KNLIVLWCRDQKIPFELYGDGGGEPAPCKEAVEFTKMMVSFLIEKLSVADSNGVVFELRA 393
Query: 122 VLRESPPASNCLIQLGFLPLLLKQL 146
+ + A C+ + G +P L++ L
Sbjct: 394 LAKSDTVARACIAEAGAIPKLVRYL 418
>sp|Q9SF15|PUB24_ARATH E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis thaliana GN=PUB24
PE=1 SV=1
Length = 456
Score = 85.1 bits (209), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 108/444 (24%), Positives = 184/444 (41%), Gaps = 61/444 (13%)
Query: 2 KEDRQMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLH-DP 60
+E+ ++ IP+ F CPISL++ DPVT +G TYDR +I KWL +CPVT Q L D
Sbjct: 3 QEEEEIEIPNYFICPISLEIMKDPVTTVSGITYDRQNIVKWLEKVP-SCPVTKQPLPLDS 61
Query: 61 SIVPNHTLRHLINQW--------LQMGGGQHFDPNYLATIDSLSTLKHSLQSHEATLETK 112
+ PNH LR LI W + P L ++ + LK Q ET
Sbjct: 62 DLTPNHMLRRLIQHWCVENETRGVVRISTPRVPPGKLNVVEEIKNLKKFGQEALGREET- 120
Query: 113 LQIVQKIHVVLRESPPAS---NCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCV 169
+QK+ V+ + C + + ++K +E + + ++ ++ESL +
Sbjct: 121 ---LQKLEVLAMDGNNRRLMCECGVHKSLILFVVK---CTSEDEDGRRRIKGLDESLRLL 174
Query: 170 QKLLLVGETESLNLLNEESKMESF---------------IVLF----EHGSCSIKKRLCH 210
+ + L+ + MES IVL E+ S I +RL
Sbjct: 175 HLIGIPSNDAKTILMENDRVMESLTWVLHQEDFLSKAYTIVLLRNLTEYTSSHIVERLNP 234
Query: 211 LVEVIISSSHETKELCCKLGKDDRLLREII-------------SLVHHNSEASDAGVRAF 257
E+ K++ + + +RE + S + H+ A A
Sbjct: 235 --EIFKGIIGFLKDVVNSVNRTSPTVRETVQSSSRPSLGKTEPSKLDHSLVIKQAVTAAL 292
Query: 258 SALCSTET---NRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDAL 314
L T + NR LV GA++ LI + + T E+ + + + + +L N + +
Sbjct: 293 MILLETSSWSRNRSLLVDLGAVSELIE-LEISYTGEKRITELMLGVLSRLCCCANGRAEI 351
Query: 315 INNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQ--AREEAICAGVLTQLLLLLQ 372
+ + G+ + K + RVS + AI+ L + S + EE + G + +L +L
Sbjct: 352 LAHRGGIAVVTKRLLRVSPA-ADDRAISILTTVSKFSPENMVVEEMVNVGTVEKLCSVLG 410
Query: 373 SQCSNRTKTKARMLLKLLRSKWAE 396
C K KA+ +LK +W +
Sbjct: 411 MDCGLNLKEKAKEILKDHFDEWKK 434
>sp|Q8GWV5|PUB3_ARATH U-box domain-containing protein 3 OS=Arabidopsis thaliana GN=PUB3
PE=2 SV=2
Length = 760
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 50/73 (68%)
Query: 5 RQMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVP 64
+ ++IP FRCP+S +L DPV + +GQT+DR+SI+KWL G CP T Q L ++P
Sbjct: 234 KGISIPPYFRCPLSTELMLDPVIVASGQTFDRTSIKKWLDNGLAVCPRTRQVLTHQELIP 293
Query: 65 NHTLRHLINQWLQ 77
N+T++ +I WL+
Sbjct: 294 NYTVKAMIASWLE 306
Score = 38.1 bits (87), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 82/174 (47%), Gaps = 10/174 (5%)
Query: 228 KLGKDDRLLREIISLVHHNS--EASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISN 285
++G+ + ++ +++L+ + DA F+ L T N+ +VQ A+ Y+
Sbjct: 591 RIGQSNAAIQALVNLLGKGTFRGKKDAASALFN-LSITHDNKARIVQAKAVK----YLVE 645
Query: 286 ALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLM 345
L + + A+A + L A+ + A++ G+ LV+ V + G ENA + L+
Sbjct: 646 LLDPDLEMVDKAVALLANLSAVGEGRQAIVRE-GGIPLLVETV-DLGSQRGKENAASVLL 703
Query: 346 MICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAEELK 399
+C +S + + G + L+ L QS + R K KA+ LL R++ +K
Sbjct: 704 QLCLNSPKFCTLVLQEGAIPPLVALSQSG-TQRAKEKAQQLLSHFRNQRDARMK 756
>sp|Q9CAG5|PUB7_ARATH U-box domain-containing protein 7 OS=Arabidopsis thaliana GN=PUB7
PE=2 SV=1
Length = 782
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 83/284 (29%), Positives = 124/284 (43%), Gaps = 30/284 (10%)
Query: 6 QMTIP-HLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVP 64
QM +P RCPISL L DPV + +GQTY+R IEKW + G+ TCP T Q L S+ P
Sbjct: 268 QMPVPPEELRCPISLQLMCDPVIIASGQTYERVCIEKWFSDGHNTCPKTQQQLPHISLTP 327
Query: 65 NHTLRHLINQWLQMGGGQHFDPNYLATIDSLSTLKHSLQSHEATLETKLQIVQKIHVVLR 124
N+ ++ LI W + G Q P+ L + +L E+ TK Q V I
Sbjct: 328 NNCVKGLIASWCEQNGTQI--PSGPPESQDLDYWRLALSDSES---TKSQSVNSI----- 377
Query: 125 ESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLL 184
S L + +PL E+ + V Q EES +N+L
Sbjct: 378 ----GSYKLKGVKIVPL--------EENGTTVVERQNTEESFVSDDDDEE---DSDINVL 422
Query: 185 NEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV- 243
E + VL E K ++ + +++ E + G + LLR + S V
Sbjct: 423 --ERYQDLLAVLNEEEGLEKKCKVVEKIRLLLKDDEEARIFMGANGFVEALLRFLGSAVD 480
Query: 244 HHNSEASDAGVRA-FSALCSTETNRKTLVQEGAINGLIAYISNA 286
+N+ A D+G A F+ + N++ ++ G I L IS+A
Sbjct: 481 DNNAAAQDSGAMALFNLAVNNNRNKELMLTSGVIRLLEKMISSA 524
>sp|Q9XIJ5|PUB18_ARATH U-box domain-containing protein 18 OS=Arabidopsis thaliana GN=PUB18
PE=2 SV=1
Length = 697
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 74/146 (50%), Gaps = 14/146 (9%)
Query: 15 CPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLRHLINQ 74
CPISL++ TDPV + TG TYDRSSI KW +GN+TCP+T + L +V N ++R +I +
Sbjct: 294 CPISLEIMTDPVVIETGHTYDRSSITKWFGSGNITCPITGKILTSTELVDNVSVRQVIRK 353
Query: 75 WLQMGG----------GQHFD--PNYLATIDSLSTLKHSLQSH--EATLETKLQIVQKIH 120
+ G H D P LA + + L S E + V++I
Sbjct: 354 HCKTNGIVLAGISRRRKSHDDVVPESLAAKGAGKLIAKFLTSELINGGEEMIYRAVREIR 413
Query: 121 VVLRESPPASNCLIQLGFLPLLLKQL 146
V + S +CL++ G + LLK L
Sbjct: 414 VQTKTSSFNRSCLVKAGAVTPLLKLL 439
>sp|O48700|PUB6_ARATH U-box domain-containing protein 6 OS=Arabidopsis thaliana GN=PUB6
PE=2 SV=2
Length = 771
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 59/109 (54%), Gaps = 10/109 (9%)
Query: 6 QMTIP-HLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVP 64
QM IP RCPISL L DPV + +GQTY+R IEKW + G+ +CP T Q L S+ P
Sbjct: 271 QMPIPPEELRCPISLQLMYDPVIIASGQTYERVCIEKWFSDGHNSCPKTQQQLPHLSLTP 330
Query: 65 NHTLRHLINQWLQMGG-------GQHFDPNY--LATIDSLSTLKHSLQS 104
N+ ++ LI W + G + D NY LA DS S S+ S
Sbjct: 331 NYCVKGLIASWCEQNGITVPTGPPESLDLNYWRLAMSDSESPNSKSVDS 379
>sp|Q9C7G1|PUB45_ARATH U-box domain-containing protein 45 OS=Arabidopsis thaliana GN=PUB45
PE=1 SV=1
Length = 768
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 6 QMTIP-HLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVP 64
QM++P RCPISL L DPV + +GQTY+R IEKW + G+ TCP T Q L + P
Sbjct: 275 QMSVPPEELRCPISLQLMYDPVIIASGQTYERICIEKWFSDGHNTCPKTHQQLSHLCLTP 334
Query: 65 NHTLRHLINQWLQMGGGQHFD 85
N+ ++ LI+ W + G Q D
Sbjct: 335 NYCVKALISSWCEQNGVQVPD 355
>sp|O22193|PUB4_ARATH U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4
PE=1 SV=3
Length = 826
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 56/86 (65%)
Query: 13 FRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLRHLI 72
F CP+SL++ TDPV + +GQTY+++ I++W+ G CP T QTL +++PN+T++ LI
Sbjct: 234 FFCPLSLEVMTDPVIVSSGQTYEKAFIKRWIDLGLKVCPKTRQTLTHTTLIPNYTVKALI 293
Query: 73 NQWLQMGGGQHFDPNYLATIDSLSTL 98
W + + DPN +++ LS L
Sbjct: 294 ANWCETNDVKLPDPNKSTSLNELSPL 319
>sp|O80742|PUB19_ARATH U-box domain-containing protein 19 OS=Arabidopsis thaliana GN=PUB19
PE=2 SV=1
Length = 686
Score = 79.7 bits (195), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 98/204 (48%), Gaps = 18/204 (8%)
Query: 5 RQMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVP 64
R + + L RCPISL++ +DPV L +G TYDRSSI KW A+GN+TCP T +TL +V
Sbjct: 275 RSLNVDDL-RCPISLEIMSDPVVLESGHTYDRSSITKWFASGNITCPKTGKTLVSTVLVD 333
Query: 65 NHTLRHLINQWLQMGG---GQHFDPNYLATIDSLSTLKHSLQSHE--------ATLETKL 113
N +++ +I + + G GQ + +SL+ + + E E +
Sbjct: 334 NFSVKQVIQSYSKQNGVVMGQK-GKKKVDVAESLAAEEAGKLTAEFLAGELIKGDEEEMV 392
Query: 114 QIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLL 173
+ + +I ++ + S +CL++ G + L+K L + S K
Sbjct: 393 KALVEIRILTKTSTFYRSCLVEAGVVESLMKILRSDDPRIQENAMAGIMNLSKDIAGKTR 452
Query: 174 LVGETES-----LNLLNEESKMES 192
+VGE + +LN+ ++ ES
Sbjct: 453 IVGEDGGGLRLIVEVLNDGARRES 476
>sp|D1FP53|LIN_MEDTR Putative E3 ubiquitin-protein ligase LIN OS=Medicago truncatula
GN=LIN PE=2 SV=1
Length = 1488
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 47/68 (69%), Gaps = 3/68 (4%)
Query: 10 PHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVP--NHT 67
P F CPI+ +F+DPVTL TGQTY+R +I++WL GN TCP+T Q L +I+P N+
Sbjct: 514 PKDFVCPITGQIFSDPVTLETGQTYERKAIQEWLGTGNTTCPITRQALS-ANILPKTNYV 572
Query: 68 LRHLINQW 75
L+ LI W
Sbjct: 573 LKRLIVSW 580
>sp|D1FP57|LIN2_LOTJA Putative E3 ubiquitin-protein ligase LIN-2 OS=Lotus japonicus
GN=LIN PE=1 SV=1
Length = 1485
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 46/68 (67%), Gaps = 3/68 (4%)
Query: 10 PHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVP--NHT 67
P F CPI+ +F DPVTL TGQTY+R +I++WL GN TCP+T Q L SI+P N+
Sbjct: 512 PKDFVCPITGQIFCDPVTLETGQTYERKAIQEWLRTGNTTCPITRQPLS-ASILPKTNYV 570
Query: 68 LRHLINQW 75
L+ LI W
Sbjct: 571 LKRLITSW 578
>sp|C6L7U1|LIN1_LOTJA Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus japonicus
GN=CERBERUS PE=2 SV=2
Length = 1485
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 46/68 (67%), Gaps = 3/68 (4%)
Query: 10 PHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVP--NHT 67
P F CPI+ +F DPVTL TGQTY+R +I++WL GN TCP+T Q L SI+P N+
Sbjct: 512 PKDFVCPITGQIFCDPVTLETGQTYERKAIQEWLRTGNTTCPITRQPLS-ASILPKTNYV 570
Query: 68 LRHLINQW 75
L+ LI W
Sbjct: 571 LKRLITSW 578
>sp|Q5XEZ8|PUB2_ARATH U-box domain-containing protein 2 OS=Arabidopsis thaliana GN=PUB2
PE=2 SV=1
Length = 707
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 45/78 (57%)
Query: 9 IPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTL 68
+P FRC +SL+L TDPV + +GQT++R I+KW+ G + CP T Q L ++ PN +
Sbjct: 240 VPSDFRCSLSLELMTDPVIVASGQTFERVFIQKWIDMGLMVCPKTRQALSHTTLTPNFIV 299
Query: 69 RHLINQWLQMGGGQHFDP 86
R + W + DP
Sbjct: 300 RAFLASWCETNNVYPPDP 317
Score = 39.7 bits (91), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 60/127 (47%), Gaps = 7/127 (5%)
Query: 266 NRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALV 325
N+ +++ GA+ L+ + A + A+ + L + K A I G+ LV
Sbjct: 579 NKTKVIEAGAVRYLVELMDPAF----GMVEKAVVVLANLATVREGKIA-IGEEGGIPVLV 633
Query: 326 KMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARM 385
++V + G ENA +L+ +C S + I GV+ L+ L +S + R K KA+
Sbjct: 634 EVV-ELGSARGKENATAALLQLCTHSPKFCNNVIREGVIPPLVALTKSGTA-RGKEKAQN 691
Query: 386 LLKLLRS 392
LLK ++
Sbjct: 692 LLKYFKA 698
>sp|Q9LQ92|PUB54_ARATH U-box domain-containing protein 54 OS=Arabidopsis thaliana GN=PUB54
PE=2 SV=1
Length = 308
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 6/76 (7%)
Query: 13 FRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLRHLI 72
F+CPIS+++ DP G TY+ KWL +G T P T + L + ++VPNHTLR +I
Sbjct: 237 FKCPISMEIMRDPHVAADGFTYEAEEFRKWLRSGGRTSPKTNKPLENHNLVPNHTLRIII 296
Query: 73 NQWLQMGGGQHFDPNY 88
WL+ +PNY
Sbjct: 297 KDWLEK------NPNY 306
>sp|O23225|PUB5_ARATH U-box domain-containing protein 5 OS=Arabidopsis thaliana GN=PUB5
PE=2 SV=3
Length = 718
Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 46/79 (58%)
Query: 8 TIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHT 67
T+P F+C +S + DPV + +G T++R I+KW GN +CP++ + L D ++ PN
Sbjct: 218 TLPEKFKCTLSRTVMYDPVIISSGNTFERMQIQKWFDEGNDSCPISKRKLDDFTLKPNVE 277
Query: 68 LRHLINQWLQMGGGQHFDP 86
L+ I++W G DP
Sbjct: 278 LKSQISEWCAKNGLDVQDP 296
>sp|Q683D5|PUB37_ARATH U-box domain-containing protein 37 OS=Arabidopsis thaliana GN=PUB37
PE=2 SV=1
Length = 400
Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 39/75 (52%)
Query: 2 KEDRQMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPS 61
+ D P F CPISL++ DP G TY+ +I WL G+ T P+T LH
Sbjct: 318 RSDEHREAPQYFICPISLEVMKDPQLAADGFTYEAEAISTWLQGGHETSPMTNTKLHHTK 377
Query: 62 IVPNHTLRHLINQWL 76
+VPN LR I +WL
Sbjct: 378 LVPNLALRSAIQEWL 392
>sp|P0C6E7|PUB55_ARATH Putative U-box domain-containing protein 55 OS=Arabidopsis thaliana
GN=PUB55 PE=3 SV=1
Length = 568
Score = 65.9 bits (159), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 39/68 (57%)
Query: 10 PHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLR 69
P F CPIS ++ +P G TY+ S+ +WL G+ T P+T L ++VPNH LR
Sbjct: 498 PSYFICPISQEVMREPRVAADGFTYEAESLREWLDNGHETSPMTNLKLAHNNLVPNHALR 557
Query: 70 HLINQWLQ 77
I +WLQ
Sbjct: 558 SAIQEWLQ 565
>sp|Q8GZ84|PUB36_ARATH U-box domain-containing protein 36 OS=Arabidopsis thaliana GN=PUB36
PE=2 SV=2
Length = 435
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 38/69 (55%)
Query: 10 PHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLR 69
P F CPI+ D+ DP G TY+ +I +W G+ T P+ + L S+VPN LR
Sbjct: 354 PQYFICPITHDIMEDPHVAADGFTYEGEAISRWFERGHETSPMINKRLPHTSLVPNLALR 413
Query: 70 HLINQWLQM 78
I +WLQ+
Sbjct: 414 SAIQEWLQL 422
>sp|Q3E9F5|PUB48_ARATH U-box domain-containing protein 48 OS=Arabidopsis thaliana GN=PUB48
PE=2 SV=1
Length = 456
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 9 IPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTL 68
+P F+C +S + DPV + +GQTY++ I +WL +LTCP Q L+ + PNH +
Sbjct: 74 VPKEFKCTLSKTIMIDPVIIFSGQTYEKRYITEWL-NHDLTCPTAKQVLYRVCLTPNHLI 132
Query: 69 RHLINQW 75
LI +W
Sbjct: 133 NELITRW 139
Score = 32.0 bits (71), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 26/122 (21%), Positives = 56/122 (45%), Gaps = 5/122 (4%)
Query: 243 VHHNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAY-ISNALTRERSLAAIAMARI 301
V N E + V A + + E N+ L + + L+A + R A + +A +
Sbjct: 226 VDSNPELQENIVTALFNMSTFEKNKTVLAENHQVIPLLAKSMKQGSVVTRRNATLTLASL 285
Query: 302 EQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICA 361
+ +S +I N + AL+ ++ + D + +A+ +++ +CCD + ++AI
Sbjct: 286 SDI----DSNKIIIGNSVALKALIDLIGELDDLSATHDALCAVIDLCCDERENWKKAISL 341
Query: 362 GV 363
G+
Sbjct: 342 GL 343
>sp|Q9FGD7|PUB50_ARATH Putative U-box domain-containing protein 50 OS=Arabidopsis thaliana
GN=PUB50 PE=3 SV=1
Length = 765
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%)
Query: 1 MKEDRQMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDP 60
M E IP +F CPI ++ +P G +Y+ +I++WL+ G+ T P+T L
Sbjct: 681 MDEGDPNDIPSVFMCPILQEVMKNPHVAADGFSYELEAIQEWLSMGHDTSPMTNLRLDYQ 740
Query: 61 SIVPNHTLRHLINQW 75
+ PNHTLR LI W
Sbjct: 741 MLTPNHTLRSLIQDW 755
>sp|Q8N9V3|WSDU1_HUMAN WD repeat, SAM and U-box domain-containing protein 1 OS=Homo
sapiens GN=WDSUB1 PE=1 SV=3
Length = 476
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 40/69 (57%)
Query: 9 IPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTL 68
IP F CPI+ +L DPV G +Y++ ++E W++ T P+T L + PN TL
Sbjct: 404 IPDEFICPITRELMKDPVIASDGYSYEKEAMENWISKKKRTSPMTNLVLPSAVLTPNRTL 463
Query: 69 RHLINQWLQ 77
+ IN+WL+
Sbjct: 464 KMAINRWLE 472
>sp|Q9SVC6|PUB22_ARATH E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana GN=PUB22
PE=1 SV=1
Length = 435
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 82/167 (49%), Gaps = 6/167 (3%)
Query: 235 LLREIISLVHH--NSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYI-SNALTRER 291
L E+I ++H + +A+ + ++ C NR V+ G I+ +I + + + ER
Sbjct: 256 LFGEVIQILHDQISHKATRSAMQILVITCPWGRNRHKAVEGGTISMIIELLMDDTFSSER 315
Query: 292 SLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMI--CC 349
+ +AM ++ L + +N+ + + K + RVS SE A+ L+ + C
Sbjct: 316 RNSEMAMVVLDMLCQCAEGRAEFLNHGAAIAVVSKKILRVS-QITSERAVRVLLSVGRFC 374
Query: 350 DSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAE 396
+ +E + GV+ +L L+LQ C N+TK KA+ LLKL W E
Sbjct: 375 ATPSLLQEMLQLGVVAKLCLVLQVSCGNKTKEKAKELLKLHARVWRE 421
>sp|Q9SW11|PUB35_ARATH U-box domain-containing protein 35 OS=Arabidopsis thaliana GN=PUB35
PE=1 SV=2
Length = 835
Score = 59.3 bits (142), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 10 PHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLR 69
P F CP+ D+ +P G TYDR +IE+WL N T P+T LH +++PN+TL
Sbjct: 767 PTHFICPLLKDVMNEPCVAADGYTYDRHAIEEWLKEHN-TSPMTDSPLHSKNLLPNYTLY 825
Query: 70 HLINQW 75
I +W
Sbjct: 826 TAIMEW 831
>sp|Q3E9F7|PUB46_ARATH Putative U-box domain-containing protein 46 OS=Arabidopsis thaliana
GN=PUB46 PE=3 SV=1
Length = 458
Score = 59.3 bits (142), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 9 IPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTL 68
+P F C +S + +PV + +GQTY++ I +WL TCP T Q L +PNH +
Sbjct: 72 VPKEFICTLSNTIMIEPVIIASGQTYEKRYITEWLKHER-TCPKTKQVLSHRLWIPNHLI 130
Query: 69 RHLINQWLQMGGGQHFDPN 87
LI QW + H P+
Sbjct: 131 SDLITQWCLVNKYDHQKPS 149
>sp|Q9D0I6|WSDU1_MOUSE WD repeat, SAM and U-box domain-containing protein 1 OS=Mus
musculus GN=Wdsub1 PE=2 SV=1
Length = 474
Score = 58.9 bits (141), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 39/69 (56%)
Query: 9 IPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTL 68
IP F CPI+ +L DPV G +Y+R ++E W+ T P+T L + PN TL
Sbjct: 402 IPDEFICPITRELMKDPVIASDGYSYEREAMESWIHKKKRTSPMTNLALPSLVLTPNRTL 461
Query: 69 RHLINQWLQ 77
+ IN+WL+
Sbjct: 462 KMAINRWLE 470
>sp|Q5FVN8|WSDU1_RAT WD repeat, SAM and U-box domain-containing protein 1 OS=Rattus
norvegicus GN=Wdsub1 PE=2 SV=1
Length = 476
Score = 58.5 bits (140), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 39/69 (56%)
Query: 9 IPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTL 68
IP F CPI+ +L DPV G +Y+R ++E W+ T P+T L + PN TL
Sbjct: 404 IPDEFICPITRELMKDPVIASDGYSYEREAMESWIHKKKRTSPMTNLALPSLVLTPNRTL 463
Query: 69 RHLINQWLQ 77
+ IN+WL+
Sbjct: 464 KMAINRWLE 472
>sp|Q8GXQ7|PUB56_ARATH U-box domain-containing protein 56 OS=Arabidopsis thaliana GN=PUB56
PE=2 SV=1
Length = 365
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 34/68 (50%)
Query: 10 PHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLR 69
P F CPIS D+ +P G TY+ +WL G P+T L + +++PN LR
Sbjct: 295 PQCFICPISKDIMQNPHVAADGYTYEADEFRRWLNHGGEKSPMTNLRLENRNLIPNLVLR 354
Query: 70 HLINQWLQ 77
I WLQ
Sbjct: 355 SAIKDWLQ 362
>sp|Q9LU47|PUB53_ARATH Putative U-box domain-containing protein 53 OS=Arabidopsis thaliana
GN=PUB53 PE=3 SV=1
Length = 819
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 10 PHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLR 69
P F CP+ D+ +P G TYDR +IE+W+ + T PVT L + +++PNHTL
Sbjct: 750 PSHFFCPLLKDVMKEPCIAADGYTYDRRAIEEWM-ENHRTSPVTNSPLQNVNLLPNHTLY 808
Query: 70 HLINQW 75
I +W
Sbjct: 809 AAIVEW 814
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.133 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 132,383,158
Number of Sequences: 539616
Number of extensions: 4910234
Number of successful extensions: 12709
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 76
Number of HSP's that attempted gapping in prelim test: 12501
Number of HSP's gapped (non-prelim): 209
length of query: 401
length of database: 191,569,459
effective HSP length: 120
effective length of query: 281
effective length of database: 126,815,539
effective search space: 35635166459
effective search space used: 35635166459
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)