Query 015728
Match_columns 401
No_of_seqs 280 out of 2597
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 09:01:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015728.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015728hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 100.0 1.7E-29 3.6E-34 276.7 30.3 285 93-393 13-313 (2102)
2 PLN03200 cellulose synthase-in 100.0 4.3E-29 9.4E-34 273.5 30.0 284 93-395 446-767 (2102)
3 KOG0166 Karyopherin (importin) 100.0 9.2E-28 2E-32 232.6 23.9 295 86-399 98-401 (514)
4 KOG0166 Karyopherin (importin) 100.0 1.1E-27 2.4E-32 232.0 23.0 280 106-401 77-360 (514)
5 KOG4224 Armadillo repeat prote 100.0 5.4E-28 1.2E-32 220.4 18.9 265 105-391 136-404 (550)
6 KOG4224 Armadillo repeat prote 99.9 7.4E-27 1.6E-31 213.0 18.2 263 108-392 180-446 (550)
7 COG5064 SRP1 Karyopherin (impo 99.9 5.4E-25 1.2E-29 199.3 16.6 278 106-401 82-365 (526)
8 COG5064 SRP1 Karyopherin (impo 99.9 3E-23 6.4E-28 188.1 17.8 284 90-392 111-398 (526)
9 KOG4199 Uncharacterized conser 99.8 3.6E-18 7.7E-23 155.0 24.4 284 90-391 142-443 (461)
10 PF05804 KAP: Kinesin-associat 99.8 6.3E-18 1.4E-22 172.8 24.5 217 160-394 264-481 (708)
11 PF05804 KAP: Kinesin-associat 99.8 2.9E-17 6.2E-22 168.0 26.4 257 109-391 263-519 (708)
12 KOG1048 Neural adherens juncti 99.7 8.2E-16 1.8E-20 154.2 18.0 278 97-392 237-595 (717)
13 PF04564 U-box: U-box domain; 99.6 3E-16 6.5E-21 115.4 4.9 72 9-80 1-72 (73)
14 KOG2122 Beta-catenin-binding p 99.6 4.7E-14 1E-18 147.5 21.4 279 108-391 310-601 (2195)
15 KOG4199 Uncharacterized conser 99.5 5.2E-12 1.1E-16 115.3 25.2 278 106-397 118-408 (461)
16 PF04826 Arm_2: Armadillo-like 99.5 6.5E-13 1.4E-17 121.3 19.2 198 186-396 10-209 (254)
17 PF04826 Arm_2: Armadillo-like 99.5 6.7E-13 1.4E-17 121.2 19.1 194 134-350 9-206 (254)
18 KOG2122 Beta-catenin-binding p 99.5 1.3E-13 2.8E-18 144.3 13.8 227 108-351 364-603 (2195)
19 smart00504 Ubox Modified RING 99.5 2.8E-14 6E-19 102.3 5.3 63 12-75 1-63 (63)
20 KOG1048 Neural adherens juncti 99.5 4.6E-12 9.9E-17 127.6 21.7 277 95-392 277-684 (717)
21 KOG4500 Rho/Rac GTPase guanine 99.4 8.1E-11 1.8E-15 110.8 23.1 270 111-392 239-519 (604)
22 cd00020 ARM Armadillo/beta-cat 99.4 2.3E-11 4.9E-16 98.5 14.1 117 269-391 2-119 (120)
23 PF15227 zf-C3HC4_4: zinc fing 99.3 6.3E-13 1.4E-17 86.1 3.0 39 15-53 1-42 (42)
24 PF10508 Proteasom_PSMB: Prote 99.3 1.4E-09 3.1E-14 110.0 27.4 278 93-391 77-365 (503)
25 PF10508 Proteasom_PSMB: Prote 99.3 1E-09 2.2E-14 111.0 25.0 276 98-399 43-325 (503)
26 cd00020 ARM Armadillo/beta-cat 99.2 8.6E-11 1.9E-15 95.0 11.6 113 233-349 6-120 (120)
27 TIGR00599 rad18 DNA repair pro 99.2 9.6E-12 2.1E-16 119.1 6.0 71 8-79 22-92 (397)
28 PF03224 V-ATPase_H_N: V-ATPas 99.2 2E-09 4.4E-14 102.5 19.3 254 116-384 31-306 (312)
29 PLN03208 E3 ubiquitin-protein 99.2 1.4E-11 3.1E-16 105.2 4.1 57 9-65 15-86 (193)
30 KOG0287 Postreplication repair 99.2 7.4E-12 1.6E-16 113.4 2.2 69 10-79 21-89 (442)
31 KOG1222 Kinesin associated pro 99.2 3.1E-10 6.7E-15 108.2 12.5 196 161-370 279-475 (791)
32 PF14835 zf-RING_6: zf-RING of 99.1 2E-11 4.3E-16 84.1 1.3 60 10-72 5-65 (65)
33 PRK09687 putative lyase; Provi 99.0 1.8E-08 3.9E-13 94.0 18.7 223 94-389 55-279 (280)
34 PF13923 zf-C3HC4_2: Zinc fing 99.0 2.5E-10 5.5E-15 73.0 3.1 38 15-53 1-39 (39)
35 KOG0823 Predicted E3 ubiquitin 99.0 1.9E-10 4.2E-15 100.1 2.9 55 11-65 46-102 (230)
36 KOG4500 Rho/Rac GTPase guanine 99.0 1.6E-07 3.5E-12 88.9 22.4 287 93-390 87-388 (604)
37 KOG1222 Kinesin associated pro 99.0 1.6E-07 3.5E-12 89.9 22.3 281 94-399 305-670 (791)
38 COG5432 RAD18 RING-finger-cont 99.0 3.2E-10 7E-15 100.8 3.1 67 11-78 24-90 (391)
39 PF03224 V-ATPase_H_N: V-ATPas 98.9 5.1E-08 1.1E-12 92.9 17.0 216 95-329 57-292 (312)
40 KOG0946 ER-Golgi vesicle-tethe 98.9 4.6E-07 1E-11 91.4 23.9 270 93-377 22-330 (970)
41 PF00097 zf-C3HC4: Zinc finger 98.9 1.4E-09 3E-14 70.5 3.4 39 15-53 1-41 (41)
42 cd00256 VATPase_H VATPase_H, r 98.9 7.4E-07 1.6E-11 87.0 23.5 276 92-391 52-424 (429)
43 KOG0317 Predicted E3 ubiquitin 98.8 1.9E-09 4.2E-14 96.6 3.7 53 9-62 236-288 (293)
44 PF13445 zf-RING_UBOX: RING-ty 98.8 1.7E-09 3.8E-14 69.9 2.3 36 15-51 1-43 (43)
45 KOG0320 Predicted E3 ubiquitin 98.8 2.3E-09 5.1E-14 89.2 3.2 53 10-63 129-183 (187)
46 PF13920 zf-C3HC4_3: Zinc fing 98.8 3.9E-09 8.4E-14 71.5 3.5 47 11-58 1-48 (50)
47 KOG0168 Putative ubiquitin fus 98.8 6.8E-07 1.5E-11 90.9 20.8 246 107-374 180-438 (1051)
48 PRK09687 putative lyase; Provi 98.8 3.5E-07 7.6E-12 85.4 17.6 198 138-392 24-250 (280)
49 PF13639 zf-RING_2: Ring finge 98.7 4.4E-09 9.5E-14 69.2 2.0 40 14-54 2-44 (44)
50 PRK13800 putative oxidoreducta 98.7 2.2E-06 4.8E-11 92.9 23.5 220 97-390 625-865 (897)
51 PHA02929 N1R/p28-like protein; 98.7 9.4E-09 2E-13 92.0 4.1 48 10-58 172-227 (238)
52 cd00256 VATPase_H VATPase_H, r 98.7 2.6E-05 5.6E-10 76.3 26.8 243 136-392 52-308 (429)
53 cd00162 RING RING-finger (Real 98.7 2.6E-08 5.7E-13 65.5 3.7 43 14-56 1-44 (45)
54 KOG2160 Armadillo/beta-catenin 98.6 1.5E-06 3.2E-11 81.3 16.4 188 102-306 90-282 (342)
55 PRK13800 putative oxidoreducta 98.6 8.1E-06 1.7E-10 88.6 24.6 151 190-388 744-895 (897)
56 KOG2177 Predicted E3 ubiquitin 98.6 2.3E-08 5E-13 95.4 3.5 69 8-79 9-77 (386)
57 KOG2160 Armadillo/beta-catenin 98.6 1.2E-05 2.6E-10 75.3 20.2 179 199-387 94-277 (342)
58 KOG0311 Predicted E3 ubiquitin 98.6 1.2E-08 2.6E-13 93.8 0.2 68 9-76 40-109 (381)
59 smart00184 RING Ring finger. E 98.6 6.4E-08 1.4E-12 61.4 3.4 39 15-53 1-39 (39)
60 PHA02926 zinc finger-like prot 98.5 7.3E-08 1.6E-12 83.4 3.3 50 9-58 167-230 (242)
61 TIGR00570 cdk7 CDK-activating 98.5 1.5E-07 3.3E-12 86.7 5.4 62 11-72 2-72 (309)
62 PF14634 zf-RING_5: zinc-RING 98.5 1.2E-07 2.6E-12 62.2 2.9 41 14-55 1-44 (44)
63 KOG2660 Locus-specific chromos 98.4 1.1E-07 2.4E-12 87.0 3.3 67 8-75 11-82 (331)
64 COG5574 PEX10 RING-finger-cont 98.4 1.3E-07 2.9E-12 83.9 3.2 51 10-60 213-264 (271)
65 KOG2164 Predicted E3 ubiquitin 98.4 1.2E-07 2.6E-12 91.6 3.0 69 12-80 186-262 (513)
66 KOG0168 Putative ubiquitin fus 98.4 1.9E-05 4E-10 80.8 18.5 201 161-374 184-392 (1051)
67 KOG1293 Proteins containing ar 98.4 5.4E-05 1.2E-09 75.7 21.1 139 249-392 393-533 (678)
68 KOG4646 Uncharacterized conser 98.4 4.7E-06 1E-10 67.1 10.6 150 234-389 16-167 (173)
69 KOG0946 ER-Golgi vesicle-tethe 98.4 3E-05 6.4E-10 78.8 18.8 194 187-392 21-241 (970)
70 KOG0978 E3 ubiquitin ligase in 98.3 2.4E-07 5.1E-12 94.0 1.4 55 10-64 641-695 (698)
71 KOG1293 Proteins containing ar 98.3 4.3E-05 9.3E-10 76.3 16.8 148 200-354 389-538 (678)
72 PF11789 zf-Nse: Zinc-finger o 98.3 3.6E-07 7.9E-12 63.1 1.6 44 11-54 10-55 (57)
73 PF01602 Adaptin_N: Adaptin N 98.3 0.00012 2.7E-09 74.8 20.8 254 98-396 119-373 (526)
74 PF05536 Neurochondrin: Neuroc 98.2 0.0002 4.4E-09 73.0 20.7 237 139-397 7-266 (543)
75 PF01602 Adaptin_N: Adaptin N 98.2 0.00017 3.6E-09 73.8 20.1 256 95-397 44-301 (526)
76 PF00514 Arm: Armadillo/beta-c 98.2 2E-06 4.4E-11 55.5 3.7 41 263-306 1-41 (41)
77 KOG3678 SARM protein (with ste 98.2 9.2E-05 2E-09 71.3 16.2 271 93-396 180-456 (832)
78 PF05536 Neurochondrin: Neuroc 98.1 6.2E-05 1.3E-09 76.7 15.4 154 189-351 6-170 (543)
79 KOG2171 Karyopherin (importin) 98.1 0.0006 1.3E-08 72.4 22.7 288 93-398 159-510 (1075)
80 COG5222 Uncharacterized conser 98.1 2.7E-06 5.8E-11 76.5 4.8 67 13-79 275-343 (427)
81 KOG2759 Vacuolar H+-ATPase V1 98.1 0.0015 3.4E-08 62.4 22.2 279 93-392 65-438 (442)
82 KOG4159 Predicted E3 ubiquitin 98.1 2.8E-06 6.1E-11 81.9 3.8 72 5-77 77-153 (398)
83 COG5152 Uncharacterized conser 98.0 2E-06 4.4E-11 72.7 2.0 59 12-72 196-254 (259)
84 PF12678 zf-rbx1: RING-H2 zinc 98.0 4.8E-06 1E-10 61.0 3.6 40 14-54 21-73 (73)
85 KOG4646 Uncharacterized conser 98.0 4.8E-05 1.1E-09 61.3 9.1 129 188-329 16-147 (173)
86 PF00514 Arm: Armadillo/beta-c 98.0 5.5E-06 1.2E-10 53.4 3.0 40 126-174 1-40 (41)
87 PF14664 RICTOR_N: Rapamycin-i 97.9 0.0032 6.9E-08 61.2 22.2 268 107-392 37-364 (371)
88 KOG0297 TNF receptor-associate 97.9 8.8E-06 1.9E-10 79.5 3.7 69 7-76 16-86 (391)
89 KOG2171 Karyopherin (importin) 97.9 0.0034 7.4E-08 66.9 22.4 263 105-381 259-535 (1075)
90 KOG1813 Predicted E3 ubiquitin 97.9 6.9E-06 1.5E-10 74.2 2.3 64 12-77 241-304 (313)
91 PF12348 CLASP_N: CLASP N term 97.9 0.0003 6.4E-09 63.8 12.9 192 198-400 17-214 (228)
92 KOG2973 Uncharacterized conser 97.9 0.0066 1.4E-07 56.0 21.1 275 95-394 5-317 (353)
93 PTZ00429 beta-adaptin; Provisi 97.8 0.011 2.4E-07 62.4 24.8 212 159-398 119-332 (746)
94 PF10165 Ric8: Guanine nucleot 97.8 0.007 1.5E-07 60.5 22.1 274 116-395 2-340 (446)
95 TIGR02270 conserved hypothetic 97.8 0.005 1.1E-07 60.6 20.5 29 361-392 268-296 (410)
96 KOG2973 Uncharacterized conser 97.7 0.0015 3.2E-08 60.1 14.3 190 190-391 5-203 (353)
97 PF13646 HEAT_2: HEAT repeats; 97.7 0.00026 5.6E-09 53.6 7.9 86 190-302 1-88 (88)
98 COG5243 HRD1 HRD ubiquitin lig 97.7 3E-05 6.4E-10 72.0 3.0 48 10-58 285-345 (491)
99 PTZ00429 beta-adaptin; Provisi 97.7 0.017 3.6E-07 61.1 23.6 212 94-346 33-245 (746)
100 KOG4628 Predicted E3 ubiquitin 97.6 3E-05 6.5E-10 72.9 2.6 46 13-58 230-278 (348)
101 PF12348 CLASP_N: CLASP N term 97.6 0.00063 1.4E-08 61.6 11.2 186 103-311 15-211 (228)
102 KOG2734 Uncharacterized conser 97.6 0.011 2.5E-07 56.9 19.3 243 115-374 104-374 (536)
103 PF10165 Ric8: Guanine nucleot 97.6 0.019 4.2E-07 57.3 22.1 253 90-352 19-340 (446)
104 KOG2879 Predicted E3 ubiquitin 97.6 6.4E-05 1.4E-09 67.3 3.9 49 10-58 237-287 (298)
105 KOG0824 Predicted E3 ubiquitin 97.6 3E-05 6.5E-10 70.3 1.8 48 13-60 8-55 (324)
106 PF14664 RICTOR_N: Rapamycin-i 97.5 0.016 3.4E-07 56.4 20.2 254 116-392 4-269 (371)
107 PF13646 HEAT_2: HEAT repeats; 97.5 0.00031 6.7E-09 53.2 6.4 87 276-387 1-87 (88)
108 smart00185 ARM Armadillo/beta- 97.5 0.0002 4.3E-09 45.7 4.5 40 264-306 2-41 (41)
109 KOG0802 E3 ubiquitin ligase [P 97.5 4.4E-05 9.6E-10 78.1 2.0 45 12-57 291-340 (543)
110 PF12861 zf-Apc11: Anaphase-pr 97.5 0.00012 2.5E-09 54.3 3.4 44 15-58 35-82 (85)
111 TIGR02270 conserved hypothetic 97.5 0.017 3.8E-07 56.8 19.6 156 190-391 88-266 (410)
112 KOG1789 Endocytosis protein RM 97.5 0.053 1.2E-06 57.7 23.3 249 107-373 1784-2141(2235)
113 KOG2759 Vacuolar H+-ATPase V1 97.5 0.12 2.6E-06 49.8 24.5 224 138-377 66-305 (442)
114 KOG3678 SARM protein (with ste 97.4 0.0019 4.2E-08 62.4 12.0 173 186-371 178-357 (832)
115 COG1413 FOG: HEAT repeat [Ener 97.4 0.015 3.2E-07 56.0 17.6 183 137-389 43-239 (335)
116 KOG1002 Nucleotide excision re 97.3 0.00013 2.8E-09 70.8 2.4 51 10-60 534-588 (791)
117 COG5540 RING-finger-containing 97.3 0.00016 3.5E-09 65.6 2.8 48 12-59 323-373 (374)
118 smart00185 ARM Armadillo/beta- 97.2 0.00066 1.4E-08 43.2 4.3 39 127-174 2-40 (41)
119 KOG1789 Endocytosis protein RM 97.2 0.16 3.5E-06 54.2 22.9 263 109-392 1739-2116(2235)
120 KOG2734 Uncharacterized conser 97.1 0.11 2.4E-06 50.4 19.9 244 93-350 125-401 (536)
121 KOG0567 HEAT repeat-containing 97.1 0.16 3.5E-06 46.1 19.6 202 136-399 66-287 (289)
122 KOG1242 Protein containing ada 97.1 0.038 8.2E-07 55.6 17.2 188 190-396 256-448 (569)
123 KOG1242 Protein containing ada 97.0 0.083 1.8E-06 53.2 19.1 259 92-383 212-474 (569)
124 KOG4642 Chaperone-dependent E3 97.0 0.00073 1.6E-08 60.0 4.0 76 6-81 205-280 (284)
125 KOG0804 Cytoplasmic Zn-finger 97.0 0.00031 6.8E-09 67.1 1.8 50 6-58 169-222 (493)
126 KOG1241 Karyopherin (importin) 97.0 0.095 2.1E-06 54.0 19.1 269 103-398 182-483 (859)
127 KOG0826 Predicted E3 ubiquitin 97.0 0.00063 1.4E-08 62.6 3.5 55 3-58 291-346 (357)
128 KOG4367 Predicted Zn-finger pr 97.0 0.00029 6.2E-09 66.9 1.2 36 10-45 2-37 (699)
129 KOG4413 26S proteasome regulat 96.9 0.29 6.2E-06 45.9 19.7 277 93-391 128-438 (524)
130 KOG1059 Vesicle coat complex A 96.9 0.32 6.9E-06 50.0 21.6 172 106-306 192-365 (877)
131 KOG1517 Guanine nucleotide bin 96.8 0.051 1.1E-06 57.7 16.2 205 186-398 510-738 (1387)
132 PF11841 DUF3361: Domain of un 96.8 0.036 7.8E-07 46.7 12.4 125 268-396 5-135 (160)
133 KOG2023 Nuclear transport rece 96.8 0.085 1.8E-06 53.6 16.7 273 92-392 127-463 (885)
134 KOG1517 Guanine nucleotide bin 96.7 0.19 4.2E-06 53.6 19.4 183 109-307 484-672 (1387)
135 COG5231 VMA13 Vacuolar H+-ATPa 96.7 0.19 4.1E-06 46.9 17.1 225 161-392 165-428 (432)
136 KOG0212 Uncharacterized conser 96.6 0.06 1.3E-06 53.6 14.3 255 108-392 180-444 (675)
137 KOG4172 Predicted E3 ubiquitin 96.6 0.00056 1.2E-08 45.4 0.1 46 13-58 8-54 (62)
138 KOG1039 Predicted E3 ubiquitin 96.6 0.0014 3.1E-08 62.1 2.7 49 10-58 159-221 (344)
139 PF09759 Atx10homo_assoc: Spin 96.5 0.01 2.2E-07 46.1 6.6 68 111-185 2-69 (102)
140 PF13513 HEAT_EZ: HEAT-like re 96.5 0.004 8.6E-08 42.6 4.0 54 248-304 2-55 (55)
141 KOG1241 Karyopherin (importin) 96.5 0.42 9.2E-06 49.4 19.5 264 110-398 145-441 (859)
142 KOG1734 Predicted RING-contain 96.4 0.00065 1.4E-08 60.7 -0.7 55 11-65 223-288 (328)
143 KOG0827 Predicted E3 ubiquitin 96.3 0.0077 1.7E-07 56.8 6.0 47 13-59 5-57 (465)
144 KOG4151 Myosin assembly protei 96.3 0.25 5.5E-06 51.3 16.8 194 181-388 497-696 (748)
145 COG5369 Uncharacterized conser 96.2 0.11 2.4E-06 51.5 13.4 192 109-315 403-603 (743)
146 PF04641 Rtf2: Rtf2 RING-finge 96.2 0.0037 8E-08 57.8 3.3 51 10-62 111-165 (260)
147 KOG3800 Predicted E3 ubiquitin 96.2 0.004 8.6E-08 56.6 3.1 47 14-60 2-53 (300)
148 COG5369 Uncharacterized conser 96.2 0.036 7.8E-07 54.9 9.8 186 165-360 407-605 (743)
149 KOG4413 26S proteasome regulat 96.2 0.27 5.9E-06 46.0 14.9 201 183-392 123-333 (524)
150 PF11841 DUF3361: Domain of un 96.1 0.13 2.8E-06 43.4 11.7 123 234-358 11-141 (160)
151 PF11793 FANCL_C: FANCL C-term 96.1 0.0015 3.3E-08 47.3 0.2 47 12-58 2-66 (70)
152 KOG3039 Uncharacterized conser 96.1 0.0036 7.9E-08 55.3 2.5 53 11-64 220-276 (303)
153 COG1413 FOG: HEAT repeat [Ener 96.1 1.4 3.1E-05 42.1 21.7 160 94-308 44-211 (335)
154 COG5240 SEC21 Vesicle coat com 96.1 1.4 3E-05 44.4 20.0 251 109-392 278-555 (898)
155 KOG1824 TATA-binding protein-i 96.0 0.36 7.9E-06 51.1 16.6 266 107-398 17-292 (1233)
156 KOG0828 Predicted E3 ubiquitin 96.0 0.0041 8.9E-08 60.3 2.6 53 7-59 566-635 (636)
157 KOG4265 Predicted E3 ubiquitin 96.0 0.0042 9.1E-08 58.3 2.5 47 12-59 290-337 (349)
158 KOG1645 RING-finger-containing 96.0 0.0029 6.3E-08 59.9 1.5 58 12-69 4-67 (463)
159 KOG2259 Uncharacterized conser 96.0 0.06 1.3E-06 54.6 10.5 218 139-391 236-474 (823)
160 PF13513 HEAT_EZ: HEAT-like re 95.9 0.013 2.8E-07 40.1 4.1 54 160-215 2-55 (55)
161 KOG1248 Uncharacterized conser 95.9 0.7 1.5E-05 50.2 18.4 226 159-399 668-906 (1176)
162 KOG2611 Neurochondrin/leucine- 95.8 1.4 3E-05 43.5 18.6 188 192-388 15-221 (698)
163 PF14570 zf-RING_4: RING/Ubox 95.8 0.0063 1.4E-07 40.0 1.8 43 15-57 1-47 (48)
164 smart00744 RINGv The RING-vari 95.7 0.012 2.6E-07 39.3 3.2 41 14-54 1-49 (49)
165 PF04078 Rcd1: Cell differenti 95.7 0.64 1.4E-05 42.4 15.2 155 109-272 64-228 (262)
166 PF09759 Atx10homo_assoc: Spin 95.6 0.041 8.9E-07 42.8 6.3 64 250-314 3-68 (102)
167 COG5096 Vesicle coat complex, 95.6 0.53 1.2E-05 49.5 15.8 165 107-307 31-196 (757)
168 PF14668 RICTOR_V: Rapamycin-i 95.5 0.088 1.9E-06 38.3 7.1 64 250-315 4-67 (73)
169 KOG3036 Protein involved in ce 95.5 1.6 3.5E-05 39.4 16.2 155 109-272 93-257 (293)
170 KOG1077 Vesicle coat complex A 95.4 3.1 6.8E-05 43.0 20.1 256 108-392 124-398 (938)
171 KOG2817 Predicted E3 ubiquitin 95.4 0.012 2.6E-07 56.0 3.2 49 9-57 331-384 (394)
172 KOG2023 Nuclear transport rece 95.4 0.23 4.9E-06 50.7 12.1 173 137-328 128-308 (885)
173 PF05290 Baculo_IE-1: Baculovi 95.3 0.017 3.7E-07 46.3 3.3 50 11-60 79-134 (140)
174 KOG1785 Tyrosine kinase negati 95.3 0.0073 1.6E-07 57.0 1.2 46 14-59 371-417 (563)
175 COG5175 MOT2 Transcriptional r 95.3 0.01 2.2E-07 54.9 2.1 49 11-60 14-66 (480)
176 KOG0825 PHD Zn-finger protein 95.2 0.0041 8.9E-08 63.4 -0.7 48 11-59 122-172 (1134)
177 COG5219 Uncharacterized conser 95.2 0.0079 1.7E-07 62.7 1.2 49 10-58 1467-1523(1525)
178 PF14447 Prok-RING_4: Prokaryo 95.2 0.013 2.8E-07 39.5 1.7 47 11-60 6-52 (55)
179 PF05004 IFRD: Interferon-rela 95.1 3.2 7E-05 39.4 19.1 196 190-393 45-258 (309)
180 COG5194 APC11 Component of SCF 95.0 0.024 5.2E-07 41.0 2.8 44 14-58 33-81 (88)
181 PF04063 DUF383: Domain of unk 94.9 0.2 4.3E-06 44.0 9.0 119 161-284 11-157 (192)
182 KOG1061 Vesicle coat complex A 94.9 0.44 9.5E-06 49.4 12.6 257 107-395 133-418 (734)
183 PF04063 DUF383: Domain of unk 94.8 0.52 1.1E-05 41.4 11.5 102 289-392 7-132 (192)
184 KOG2042 Ubiquitin fusion degra 94.7 0.045 9.7E-07 58.2 5.1 74 6-80 864-938 (943)
185 KOG1059 Vesicle coat complex A 94.6 3.7 8E-05 42.6 18.0 118 139-284 146-266 (877)
186 KOG4185 Predicted E3 ubiquitin 94.5 0.036 7.9E-07 52.3 3.8 64 12-75 3-77 (296)
187 PRK14707 hypothetical protein; 94.5 11 0.00023 44.1 22.6 282 89-392 201-488 (2710)
188 KOG1058 Vesicle coat complex C 94.4 3.9 8.4E-05 42.7 17.7 238 108-392 219-463 (948)
189 KOG0213 Splicing factor 3b, su 94.3 0.63 1.4E-05 48.2 11.9 146 190-350 801-955 (1172)
190 KOG1571 Predicted E3 ubiquitin 94.2 0.032 7E-07 52.5 2.6 49 6-58 299-347 (355)
191 PF02891 zf-MIZ: MIZ/SP-RING z 94.2 0.058 1.3E-06 36.1 3.1 44 13-56 3-50 (50)
192 KOG4151 Myosin assembly protei 94.2 1 2.2E-05 47.0 13.3 225 123-370 490-720 (748)
193 PRK14707 hypothetical protein; 94.2 15 0.00033 43.1 23.1 231 92-344 246-482 (2710)
194 KOG1077 Vesicle coat complex A 94.1 8.1 0.00018 40.2 19.2 257 100-394 153-435 (938)
195 COG5220 TFB3 Cdk activating ki 94.1 0.014 3.1E-07 51.4 -0.0 47 11-57 9-63 (314)
196 KOG1062 Vesicle coat complex A 94.0 9.4 0.0002 40.2 22.4 212 160-392 309-581 (866)
197 COG5181 HSH155 U2 snRNP splice 93.9 0.96 2.1E-05 45.9 12.2 195 135-350 541-760 (975)
198 KOG1493 Anaphase-promoting com 93.9 0.023 5E-07 40.7 0.8 45 14-58 33-81 (84)
199 KOG4692 Predicted E3 ubiquitin 93.9 0.034 7.3E-07 51.9 2.0 48 10-58 420-467 (489)
200 PF06371 Drf_GBD: Diaphanous G 93.8 0.55 1.2E-05 40.8 9.5 146 65-215 34-185 (187)
201 PF08324 PUL: PUL domain; Int 93.8 1.7 3.7E-05 40.2 13.4 239 65-340 13-265 (268)
202 KOG3036 Protein involved in ce 93.7 2.5 5.5E-05 38.2 13.3 143 249-392 95-247 (293)
203 COG5240 SEC21 Vesicle coat com 93.7 4.5 9.7E-05 41.0 16.2 202 115-355 247-448 (898)
204 COG5181 HSH155 U2 snRNP splice 93.7 2.1 4.5E-05 43.6 14.0 151 138-306 605-759 (975)
205 PF08045 CDC14: Cell division 93.7 0.87 1.9E-05 41.7 10.7 99 109-215 105-205 (257)
206 KOG0213 Splicing factor 3b, su 93.6 2.8 6.1E-05 43.7 14.9 150 139-306 801-954 (1172)
207 KOG0289 mRNA splicing factor [ 93.6 0.22 4.8E-06 48.0 6.9 50 13-63 1-51 (506)
208 KOG4275 Predicted E3 ubiquitin 93.5 0.016 3.5E-07 52.6 -0.6 41 12-57 300-341 (350)
209 KOG1061 Vesicle coat complex A 93.5 1.6 3.5E-05 45.4 13.4 248 108-400 62-316 (734)
210 PF13764 E3_UbLigase_R4: E3 ub 93.5 8.4 0.00018 41.4 19.0 249 131-392 111-406 (802)
211 PF02985 HEAT: HEAT repeat; I 93.2 0.22 4.7E-06 29.5 4.2 30 363-393 1-30 (31)
212 PF06371 Drf_GBD: Diaphanous G 93.2 0.39 8.4E-06 41.8 7.6 81 267-348 100-186 (187)
213 PF07814 WAPL: Wings apart-lik 93.2 5 0.00011 39.0 15.9 246 95-363 23-313 (361)
214 KOG3002 Zn finger protein [Gen 93.1 0.091 2E-06 49.2 3.5 61 9-76 45-106 (299)
215 KOG1814 Predicted E3 ubiquitin 93.0 0.1 2.2E-06 50.0 3.7 46 10-55 182-237 (445)
216 KOG0212 Uncharacterized conser 93.0 6.2 0.00013 39.9 16.0 261 109-392 138-406 (675)
217 PF12755 Vac14_Fab1_bd: Vacuol 93.0 0.52 1.1E-05 36.5 7.0 91 251-348 4-95 (97)
218 PF05004 IFRD: Interferon-rela 92.9 4.5 9.8E-05 38.4 14.8 179 107-305 55-256 (309)
219 KOG3039 Uncharacterized conser 92.9 0.072 1.6E-06 47.3 2.4 36 9-44 40-75 (303)
220 KOG2611 Neurochondrin/leucine- 92.9 4.4 9.6E-05 40.1 14.6 129 239-371 16-161 (698)
221 COG5096 Vesicle coat complex, 92.9 6.2 0.00013 41.8 16.7 103 275-392 93-195 (757)
222 KOG4362 Transcriptional regula 92.9 0.035 7.6E-07 56.9 0.5 68 10-77 19-88 (684)
223 KOG1001 Helicase-like transcri 92.9 0.046 1E-06 57.1 1.4 46 13-59 455-501 (674)
224 KOG1824 TATA-binding protein-i 92.8 11 0.00024 40.6 18.1 244 102-374 485-746 (1233)
225 PF12719 Cnd3: Nuclear condens 92.7 4.1 8.9E-05 38.4 14.3 157 107-284 39-207 (298)
226 KOG3113 Uncharacterized conser 92.7 0.13 2.7E-06 46.0 3.6 49 10-61 109-161 (293)
227 KOG2999 Regulator of Rac1, req 92.5 7 0.00015 39.5 15.5 164 190-360 85-254 (713)
228 KOG1062 Vesicle coat complex A 92.5 16 0.00035 38.5 20.7 225 100-348 149-413 (866)
229 KOG1941 Acetylcholine receptor 92.4 0.058 1.3E-06 51.1 1.2 43 12-54 365-412 (518)
230 PF11698 V-ATPase_H_C: V-ATPas 92.4 0.55 1.2E-05 37.6 6.6 71 93-172 43-113 (119)
231 PF12755 Vac14_Fab1_bd: Vacuol 92.4 0.9 2E-05 35.1 7.7 67 319-390 27-95 (97)
232 COG5113 UFD2 Ubiquitin fusion 92.2 0.3 6.5E-06 49.4 6.0 78 5-83 847-925 (929)
233 PF06025 DUF913: Domain of Unk 92.1 3.2 6.9E-05 40.6 12.9 126 136-272 105-243 (379)
234 PF12031 DUF3518: Domain of un 91.9 0.7 1.5E-05 41.6 7.3 83 291-374 138-228 (257)
235 PF04078 Rcd1: Cell differenti 91.8 8.7 0.00019 35.2 14.4 146 201-350 8-169 (262)
236 KOG2259 Uncharacterized conser 91.7 1.5 3.3E-05 44.9 10.2 144 186-353 371-515 (823)
237 KOG2999 Regulator of Rac1, req 91.7 4.6 0.0001 40.7 13.3 158 238-397 87-247 (713)
238 KOG2114 Vacuolar assembly/sort 91.6 0.16 3.4E-06 53.0 3.4 41 11-55 839-880 (933)
239 PF13764 E3_UbLigase_R4: E3 ub 91.6 23 0.00049 38.2 24.2 246 93-350 117-407 (802)
240 PF12031 DUF3518: Domain of un 91.5 0.52 1.1E-05 42.4 6.1 79 248-328 139-225 (257)
241 KOG3970 Predicted E3 ubiquitin 91.5 0.36 7.8E-06 42.3 5.0 48 13-60 51-107 (299)
242 KOG3161 Predicted E3 ubiquitin 91.5 0.1 2.2E-06 52.6 1.8 39 10-51 9-51 (861)
243 KOG2274 Predicted importin 9 [ 91.4 5.7 0.00012 42.3 14.2 170 188-365 530-705 (1005)
244 COG5231 VMA13 Vacuolar H+-ATPa 91.3 9.9 0.00021 35.9 14.2 219 111-348 165-427 (432)
245 KOG1788 Uncharacterized conser 91.3 8.2 0.00018 42.0 15.2 254 116-391 663-981 (2799)
246 KOG1060 Vesicle coat complex A 91.3 2.9 6.4E-05 43.7 11.9 173 196-390 295-494 (968)
247 PF11698 V-ATPase_H_C: V-ATPas 91.2 0.63 1.4E-05 37.3 5.7 72 320-392 44-115 (119)
248 KOG4535 HEAT and armadillo rep 91.1 0.37 8E-06 47.4 5.1 185 107-306 400-603 (728)
249 PF12719 Cnd3: Nuclear condens 91.1 14 0.0003 34.8 16.6 170 188-374 26-209 (298)
250 COG5109 Uncharacterized conser 90.8 0.2 4.3E-06 46.2 2.9 49 8-56 332-385 (396)
251 KOG1078 Vesicle coat complex C 90.7 25 0.00054 37.2 20.4 247 108-392 258-532 (865)
252 PF05918 API5: Apoptosis inhib 90.7 8.7 0.00019 39.3 14.6 101 237-352 26-128 (556)
253 PF08746 zf-RING-like: RING-li 90.6 0.27 5.8E-06 31.8 2.5 39 15-53 1-43 (43)
254 PF02985 HEAT: HEAT repeat; I 90.5 0.38 8.2E-06 28.4 3.1 29 275-306 1-29 (31)
255 KOG0915 Uncharacterized conser 90.4 9.8 0.00021 43.0 15.4 275 102-399 964-1272(1702)
256 PF12717 Cnd1: non-SMC mitotic 90.4 11 0.00024 32.5 15.3 90 159-263 2-93 (178)
257 COG5215 KAP95 Karyopherin (imp 90.0 24 0.00053 36.0 19.4 267 108-398 147-443 (858)
258 PF08045 CDC14: Cell division 89.9 5.4 0.00012 36.6 11.3 98 292-390 106-205 (257)
259 KOG0301 Phospholipase A2-activ 89.6 28 0.00061 36.1 19.2 189 194-389 550-744 (745)
260 PF14668 RICTOR_V: Rapamycin-i 89.6 3.7 8.1E-05 29.8 8.1 67 294-362 4-70 (73)
261 PF12717 Cnd1: non-SMC mitotic 89.2 3.1 6.7E-05 36.0 9.0 92 109-219 2-93 (178)
262 PF05918 API5: Apoptosis inhib 89.1 29 0.00063 35.6 17.5 134 94-258 21-158 (556)
263 PF11701 UNC45-central: Myosin 89.1 7.8 0.00017 32.8 11.2 133 246-386 18-153 (157)
264 KOG4739 Uncharacterized protei 89.1 0.11 2.4E-06 46.4 -0.1 47 13-62 4-52 (233)
265 KOG2025 Chromosome condensatio 88.9 12 0.00026 39.0 13.8 115 136-272 84-200 (892)
266 KOG2930 SCF ubiquitin ligase, 88.5 0.3 6.5E-06 37.4 1.8 27 29-56 80-106 (114)
267 PHA03096 p28-like protein; Pro 88.4 0.27 5.8E-06 45.8 1.8 42 13-54 179-230 (284)
268 PF11701 UNC45-central: Myosin 88.1 3.2 6.8E-05 35.2 8.1 130 161-302 21-155 (157)
269 KOG1240 Protein kinase contain 87.5 48 0.001 37.0 17.8 220 159-394 437-727 (1431)
270 KOG1812 Predicted E3 ubiquitin 87.2 0.37 8E-06 47.2 2.1 48 12-59 146-204 (384)
271 KOG4535 HEAT and armadillo rep 87.1 1.3 2.9E-05 43.7 5.7 155 189-346 434-600 (728)
272 KOG1060 Vesicle coat complex A 87.0 45 0.00098 35.4 18.4 206 140-392 38-246 (968)
273 PF12460 MMS19_C: RNAPII trans 87.0 34 0.00074 33.9 16.0 187 189-397 190-399 (415)
274 KOG1943 Beta-tubulin folding c 86.3 17 0.00037 39.7 13.7 151 234-392 341-501 (1133)
275 PF10367 Vps39_2: Vacuolar sor 85.8 0.31 6.8E-06 38.2 0.7 33 8-40 74-108 (109)
276 KOG2274 Predicted importin 9 [ 85.8 56 0.0012 35.3 19.4 230 109-354 543-785 (1005)
277 KOG1991 Nuclear transport rece 85.8 31 0.00068 37.4 15.2 156 233-398 409-579 (1010)
278 KOG1991 Nuclear transport rece 85.8 58 0.0013 35.4 22.7 230 106-353 429-675 (1010)
279 KOG0298 DEAD box-containing he 85.6 0.25 5.4E-06 53.9 0.0 46 10-56 1151-1197(1394)
280 KOG1248 Uncharacterized conser 85.4 39 0.00084 37.4 15.9 183 199-398 665-862 (1176)
281 COG5116 RPN2 26S proteasome re 85.4 2.1 4.6E-05 43.2 6.2 68 273-351 550-617 (926)
282 COG5236 Uncharacterized conser 85.1 0.67 1.5E-05 43.4 2.6 48 10-57 59-107 (493)
283 PF08324 PUL: PUL domain; Int 84.6 6.8 0.00015 36.2 9.2 136 247-386 124-268 (268)
284 KOG2979 Protein involved in DN 84.3 0.99 2.1E-05 40.8 3.2 45 12-56 176-222 (262)
285 KOG2025 Chromosome condensatio 83.9 55 0.0012 34.4 15.4 189 187-389 84-291 (892)
286 COG5209 RCD1 Uncharacterized p 83.6 27 0.00059 31.3 11.6 174 205-390 117-310 (315)
287 PF14569 zf-UDP: Zinc-binding 83.6 1.2 2.7E-05 32.3 2.8 48 12-59 9-63 (80)
288 KOG1940 Zn-finger protein [Gen 83.5 0.51 1.1E-05 43.5 1.1 43 12-55 158-204 (276)
289 KOG1240 Protein kinase contain 82.5 90 0.0019 35.0 17.5 189 190-392 424-685 (1431)
290 cd03569 VHS_Hrs_Vps27p VHS dom 82.1 11 0.00023 31.4 8.4 74 320-394 42-116 (142)
291 KOG0414 Chromosome condensatio 81.7 16 0.00034 40.4 11.2 140 235-392 920-1064(1251)
292 PF12460 MMS19_C: RNAPII trans 81.5 59 0.0013 32.2 17.6 129 234-369 271-413 (415)
293 KOG0567 HEAT repeat-containing 81.2 22 0.00048 32.7 10.4 128 86-259 147-277 (289)
294 KOG1967 DNA repair/transcripti 81.1 13 0.00028 39.9 10.1 146 136-300 866-1018(1030)
295 PF06025 DUF913: Domain of Unk 81.0 58 0.0013 31.9 21.6 223 114-359 3-242 (379)
296 KOG1967 DNA repair/transcripti 80.6 24 0.00052 38.0 11.9 148 188-344 867-1019(1030)
297 PHA02825 LAP/PHD finger-like p 80.2 2.2 4.8E-05 35.7 3.6 47 11-58 7-59 (162)
298 PF00790 VHS: VHS domain; Int 79.8 9.7 0.00021 31.4 7.4 71 321-392 44-118 (140)
299 COG3813 Uncharacterized protei 79.7 1.7 3.7E-05 30.9 2.3 36 30-68 27-62 (84)
300 PF08569 Mo25: Mo25-like; Int 79.3 62 0.0013 31.1 14.7 186 107-309 88-286 (335)
301 cd03568 VHS_STAM VHS domain fa 79.3 13 0.00028 31.0 7.9 73 320-393 38-111 (144)
302 PF07191 zinc-ribbons_6: zinc- 78.8 0.099 2.2E-06 37.3 -4.1 41 12-58 1-41 (70)
303 PF05605 zf-Di19: Drought indu 78.6 1.9 4E-05 29.3 2.3 38 11-55 1-39 (54)
304 PF03854 zf-P11: P-11 zinc fin 78.5 0.76 1.6E-05 29.9 0.3 43 14-59 4-47 (50)
305 KOG2034 Vacuolar sorting prote 78.1 1.1 2.5E-05 47.2 1.6 37 8-44 813-851 (911)
306 PF08569 Mo25: Mo25-like; Int 78.1 67 0.0015 30.9 20.1 199 186-392 74-283 (335)
307 KOG1943 Beta-tubulin folding c 78.0 1.1E+02 0.0023 33.9 15.8 107 189-305 380-499 (1133)
308 COG5209 RCD1 Uncharacterized p 77.9 21 0.00045 32.1 9.0 152 110-270 115-276 (315)
309 KOG1820 Microtubule-associated 77.8 80 0.0017 34.2 15.0 183 197-397 262-448 (815)
310 PF14446 Prok-RING_1: Prokaryo 77.6 2 4.4E-05 29.0 2.1 30 12-41 5-38 (54)
311 cd03561 VHS VHS domain family; 77.6 18 0.0004 29.5 8.4 76 320-396 38-116 (133)
312 KOG2062 26S proteasome regulat 77.4 6.2 0.00014 41.2 6.4 67 275-352 555-621 (929)
313 PF10272 Tmpp129: Putative tra 77.4 1.5 3.4E-05 42.1 2.1 27 34-60 315-353 (358)
314 KOG3899 Uncharacterized conser 77.0 1.4 3.1E-05 40.3 1.7 31 30-60 325-367 (381)
315 KOG0414 Chromosome condensatio 76.7 31 0.00068 38.2 11.6 139 189-350 920-1065(1251)
316 KOG3579 Predicted E3 ubiquitin 76.3 1.6 3.5E-05 39.8 1.8 43 10-52 266-316 (352)
317 KOG0211 Protein phosphatase 2A 75.4 71 0.0015 34.3 13.8 172 108-305 250-426 (759)
318 KOG4653 Uncharacterized conser 74.6 50 0.0011 35.4 12.1 173 105-306 737-918 (982)
319 KOG0301 Phospholipase A2-activ 74.3 1.2E+02 0.0025 31.8 15.6 169 94-285 546-727 (745)
320 smart00288 VHS Domain present 74.1 25 0.00054 28.7 8.3 71 321-392 39-111 (133)
321 PF14353 CpXC: CpXC protein 74.1 2 4.4E-05 34.9 1.8 47 12-58 1-49 (128)
322 KOG2932 E3 ubiquitin ligase in 73.8 1.6 3.4E-05 40.4 1.1 43 12-57 90-133 (389)
323 cd03565 VHS_Tom1 VHS domain fa 72.8 21 0.00045 29.6 7.5 73 320-392 39-115 (141)
324 PF12906 RINGv: RING-variant d 72.7 3.1 6.8E-05 27.3 2.1 39 15-53 1-47 (47)
325 PF11707 Npa1: Ribosome 60S bi 72.4 93 0.002 29.8 18.1 162 139-314 58-245 (330)
326 KOG1820 Microtubule-associated 72.0 89 0.0019 33.9 13.6 176 106-306 264-443 (815)
327 PHA02862 5L protein; Provision 71.9 3.6 7.9E-05 33.8 2.6 45 14-59 4-54 (156)
328 PF14726 RTTN_N: Rotatin, an a 71.3 45 0.00098 25.7 9.1 66 233-301 29-95 (98)
329 KOG2062 26S proteasome regulat 70.9 48 0.001 35.0 10.8 96 234-347 554-651 (929)
330 KOG4445 Uncharacterized conser 70.8 1.8 3.8E-05 40.0 0.7 50 10-59 113-187 (368)
331 KOG0825 PHD Zn-finger protein 70.2 3.9 8.4E-05 42.7 3.0 49 9-57 93-153 (1134)
332 PLN02189 cellulose synthase 70.2 3.1 6.8E-05 45.2 2.5 46 13-58 35-87 (1040)
333 PF11707 Npa1: Ribosome 60S bi 69.6 1.1E+02 0.0023 29.4 15.2 156 190-351 58-239 (330)
334 KOG3268 Predicted E3 ubiquitin 69.5 4 8.7E-05 34.6 2.5 32 28-59 188-229 (234)
335 PF06906 DUF1272: Protein of u 69.2 5 0.00011 27.2 2.4 44 14-60 7-54 (57)
336 KOG0915 Uncharacterized conser 68.7 90 0.0019 35.8 12.9 199 187-399 955-1167(1702)
337 PLN02436 cellulose synthase A 68.5 3.5 7.7E-05 44.9 2.5 46 13-58 37-89 (1094)
338 COG5627 MMS21 DNA repair prote 68.1 5.5 0.00012 35.5 3.1 57 12-68 189-249 (275)
339 PF08167 RIX1: rRNA processing 68.1 33 0.0007 29.2 8.0 107 189-305 26-142 (165)
340 PF12530 DUF3730: Protein of u 67.8 95 0.0021 28.1 18.5 124 159-305 15-150 (234)
341 PF14225 MOR2-PAG1_C: Cell mor 67.2 1.1E+02 0.0023 28.4 13.4 64 235-305 189-253 (262)
342 PF08216 CTNNBL: Catenin-beta- 66.8 6.4 0.00014 30.9 3.0 42 249-293 62-103 (108)
343 smart00638 LPD_N Lipoprotein N 66.8 1.6E+02 0.0035 30.4 15.7 144 186-350 355-510 (574)
344 cd03567 VHS_GGA VHS domain fam 66.2 45 0.00098 27.6 8.1 73 320-393 39-117 (139)
345 PLN02638 cellulose synthase A 65.9 4.3 9.3E-05 44.4 2.5 46 13-58 18-70 (1079)
346 PF10363 DUF2435: Protein of u 65.7 22 0.00047 27.1 5.7 70 278-353 7-76 (92)
347 PF10497 zf-4CXXC_R1: Zinc-fin 65.2 6.4 0.00014 30.9 2.8 26 31-56 37-70 (105)
348 KOG2462 C2H2-type Zn-finger pr 64.8 3.2 7E-05 38.0 1.1 50 10-59 159-227 (279)
349 PF11791 Aconitase_B_N: Aconit 64.3 19 0.00042 30.1 5.4 31 189-219 95-125 (154)
350 PF01347 Vitellogenin_N: Lipop 64.1 66 0.0014 33.6 11.0 141 188-350 395-554 (618)
351 KOG1815 Predicted E3 ubiquitin 63.7 4.5 9.8E-05 40.6 2.1 35 11-45 69-104 (444)
352 KOG2032 Uncharacterized conser 63.7 1.6E+02 0.0034 29.8 12.4 138 246-389 271-413 (533)
353 PF10235 Cript: Microtubule-as 63.1 4.4 9.6E-05 30.6 1.4 38 12-59 44-81 (90)
354 PLN02195 cellulose synthase A 62.8 6.1 0.00013 42.8 2.9 45 14-58 8-59 (977)
355 PF10083 DUF2321: Uncharacteri 62.6 26 0.00055 29.4 5.9 94 30-132 26-123 (158)
356 cd00350 rubredoxin_like Rubred 62.5 5.6 0.00012 23.9 1.5 11 46-56 16-26 (33)
357 PRK04023 DNA polymerase II lar 61.8 7.9 0.00017 41.9 3.5 47 11-60 625-676 (1121)
358 KOG1058 Vesicle coat complex C 61.4 2.3E+02 0.005 30.3 18.5 217 96-354 224-468 (948)
359 PF04216 FdhE: Protein involve 61.3 1.4 3E-05 41.5 -1.9 46 11-57 171-221 (290)
360 COG5215 KAP95 Karyopherin (imp 61.3 2.1E+02 0.0045 29.7 21.6 183 194-390 100-290 (858)
361 KOG1992 Nuclear export recepto 61.2 1.6E+02 0.0035 31.7 12.5 174 138-328 499-704 (960)
362 PF12397 U3snoRNP10: U3 small 61.2 81 0.0018 25.0 9.5 89 275-371 7-103 (121)
363 KOG4718 Non-SMC (structural ma 61.0 5.7 0.00012 34.9 1.9 46 13-59 182-228 (235)
364 PF08167 RIX1: rRNA processing 60.9 91 0.002 26.5 9.4 115 275-396 26-147 (165)
365 COG5218 YCG1 Chromosome conden 60.4 2.2E+02 0.0047 29.6 16.6 118 176-309 81-199 (885)
366 PF06844 DUF1244: Protein of u 60.4 5.6 0.00012 27.9 1.4 13 33-45 11-23 (68)
367 KOG1100 Predicted E3 ubiquitin 59.7 4.7 0.0001 35.8 1.2 39 15-58 161-200 (207)
368 PF10571 UPF0547: Uncharacteri 59.5 4.7 0.0001 22.9 0.8 8 15-22 3-10 (26)
369 KOG1078 Vesicle coat complex C 59.3 2.5E+02 0.0055 30.1 18.8 54 160-220 260-313 (865)
370 COG5218 YCG1 Chromosome conden 58.9 79 0.0017 32.6 9.6 99 274-384 91-191 (885)
371 PF14726 RTTN_N: Rotatin, an a 58.2 65 0.0014 24.9 7.1 79 160-243 2-80 (98)
372 KOG2169 Zn-finger transcriptio 58.0 8.3 0.00018 40.5 2.9 67 9-77 303-375 (636)
373 PLN02400 cellulose synthase 57.6 5.3 0.00012 43.7 1.4 46 13-58 37-89 (1085)
374 PLN02915 cellulose synthase A 56.7 7.7 0.00017 42.4 2.4 48 11-58 14-68 (1044)
375 KOG3665 ZYG-1-like serine/thre 55.8 2.7E+02 0.0059 29.8 13.7 175 118-326 494-674 (699)
376 KOG4464 Signaling protein RIC- 55.4 2.2E+02 0.0048 28.2 14.3 87 109-199 111-198 (532)
377 PF13240 zinc_ribbon_2: zinc-r 55.3 1.6 3.5E-05 24.0 -1.5 9 48-56 14-22 (23)
378 KOG4653 Uncharacterized conser 55.2 1.8E+02 0.004 31.4 11.8 146 247-397 741-923 (982)
379 PRK06266 transcription initiat 54.8 12 0.00026 32.4 2.9 53 10-78 115-168 (178)
380 KOG0211 Protein phosphatase 2A 53.9 3.2E+02 0.0069 29.5 16.1 184 189-392 438-625 (759)
381 KOG2956 CLIP-associating prote 52.8 2.6E+02 0.0056 28.2 16.1 186 94-305 284-476 (516)
382 PF00790 VHS: VHS domain; Int 52.3 47 0.001 27.3 6.0 71 93-172 42-115 (140)
383 PF11865 DUF3385: Domain of un 52.2 1.4E+02 0.0031 25.1 9.8 142 234-390 10-155 (160)
384 KOG4231 Intracellular membrane 51.4 15 0.00033 36.8 3.3 71 321-392 329-399 (763)
385 KOG2933 Uncharacterized conser 51.1 2E+02 0.0043 27.3 10.3 95 247-350 102-200 (334)
386 KOG0314 Predicted E3 ubiquitin 51.0 11 0.00024 37.3 2.3 66 9-76 216-285 (448)
387 KOG3665 ZYG-1-like serine/thre 50.6 62 0.0014 34.5 8.0 138 256-396 494-658 (699)
388 PF04499 SAPS: SIT4 phosphatas 50.4 2.7E+02 0.0059 28.2 12.1 80 268-350 56-149 (475)
389 KOG2137 Protein kinase [Signal 50.4 2.2E+02 0.0049 30.0 11.5 155 235-399 390-550 (700)
390 PF14500 MMS19_N: Dos2-interac 49.7 2.1E+02 0.0046 26.4 16.8 188 193-395 4-240 (262)
391 cd03569 VHS_Hrs_Vps27p VHS dom 49.5 69 0.0015 26.5 6.6 71 274-348 41-113 (142)
392 TIGR01562 FdhE formate dehydro 49.1 4.7 0.0001 38.0 -0.5 44 12-56 184-233 (305)
393 PF05883 Baculo_RING: Baculovi 49.1 8.3 0.00018 31.5 0.9 33 12-44 26-67 (134)
394 COG4068 Uncharacterized protei 48.7 24 0.00053 24.1 2.9 30 47-76 8-37 (64)
395 smart00288 VHS Domain present 48.7 1.5E+02 0.0032 24.2 9.5 72 93-173 37-109 (133)
396 PF07975 C1_4: TFIIH C1-like d 47.7 14 0.00031 24.7 1.7 39 15-54 2-50 (51)
397 PF11865 DUF3385: Domain of un 47.6 1.6E+02 0.0034 24.9 8.6 39 92-131 9-47 (160)
398 KOG0309 Conserved WD40 repeat- 47.5 13 0.00028 38.9 2.2 43 11-54 1027-1072(1081)
399 PF04388 Hamartin: Hamartin pr 47.2 3.8E+02 0.0083 28.5 13.7 134 137-305 4-139 (668)
400 PF13251 DUF4042: Domain of un 47.1 1.9E+02 0.0042 25.1 9.5 114 273-392 38-174 (182)
401 cd03568 VHS_STAM VHS domain fa 47.1 1.1E+02 0.0023 25.5 7.4 71 188-261 37-109 (144)
402 COG5183 SSM4 Protein involved 46.8 18 0.0004 38.2 3.2 51 9-59 9-67 (1175)
403 COG5116 RPN2 26S proteasome re 46.5 1.9E+02 0.004 29.9 9.9 96 234-347 551-648 (926)
404 PLN03205 ATR interacting prote 46.1 97 0.0021 30.4 7.6 116 276-397 325-450 (652)
405 COG0068 HypF Hydrogenase matur 46.1 11 0.00024 39.3 1.5 49 9-57 98-183 (750)
406 COG5656 SXM1 Importin, protein 45.5 4.2E+02 0.0091 28.5 13.8 112 233-351 407-530 (970)
407 COG1675 TFA1 Transcription ini 45.4 23 0.00049 30.6 3.1 31 46-76 131-162 (176)
408 TIGR00373 conserved hypothetic 45.3 29 0.00063 29.4 3.8 14 46-59 127-140 (158)
409 KOG1020 Sister chromatid cohes 45.2 2.3E+02 0.0049 32.8 11.1 112 136-268 815-927 (1692)
410 PF10363 DUF2435: Protein of u 45.2 73 0.0016 24.2 5.6 57 107-174 15-71 (92)
411 COG4306 Uncharacterized protei 44.7 51 0.0011 26.4 4.6 82 32-128 28-119 (160)
412 KOG1952 Transcription factor N 44.6 16 0.00036 38.7 2.5 15 30-44 213-227 (950)
413 PF09889 DUF2116: Uncharacteri 44.6 32 0.0007 23.8 3.2 14 47-60 3-16 (59)
414 PF09538 FYDLN_acid: Protein o 44.1 17 0.00037 28.6 2.0 15 46-60 25-39 (108)
415 KOG3476 Microtubule-associated 43.7 4.4 9.5E-05 30.0 -1.3 37 12-58 54-90 (100)
416 KOG3799 Rab3 effector RIM1 and 43.5 22 0.00047 28.8 2.5 39 8-57 61-99 (169)
417 COG5098 Chromosome condensatio 43.4 3.1E+02 0.0067 29.2 11.0 130 200-351 908-1039(1128)
418 PRK03564 formate dehydrogenase 43.0 8.5 0.00018 36.4 0.2 45 11-56 186-235 (309)
419 PRK14714 DNA polymerase II lar 42.7 25 0.00054 39.4 3.6 65 12-76 667-741 (1337)
420 KOG2956 CLIP-associating prote 42.6 2.1E+02 0.0046 28.7 9.5 102 292-396 302-405 (516)
421 PF08506 Cse1: Cse1; InterPro 42.5 3E+02 0.0066 26.8 10.8 135 107-257 223-370 (370)
422 KOG2032 Uncharacterized conser 42.4 3.8E+02 0.0083 27.2 18.4 195 94-314 215-423 (533)
423 PF05502 Dynactin_p62: Dynacti 42.3 9.8 0.00021 38.5 0.5 50 9-58 2-63 (483)
424 PF07800 DUF1644: Protein of u 42.3 13 0.00029 31.2 1.2 21 11-31 1-21 (162)
425 cd03567 VHS_GGA VHS domain fam 42.1 1.4E+02 0.003 24.6 7.2 71 188-261 38-115 (139)
426 PF12773 DZR: Double zinc ribb 41.8 19 0.00041 23.6 1.7 26 33-58 13-40 (50)
427 PF06012 DUF908: Domain of Unk 41.7 1.3E+02 0.0028 28.8 8.0 79 249-327 238-324 (329)
428 KOG2462 C2H2-type Zn-finger pr 41.5 20 0.00042 33.0 2.2 48 12-59 187-255 (279)
429 KOG3842 Adaptor protein Pellin 41.0 22 0.00048 33.2 2.5 48 11-59 340-415 (429)
430 cd00730 rubredoxin Rubredoxin; 40.9 12 0.00026 25.0 0.6 13 8-20 30-42 (50)
431 PF03130 HEAT_PBS: PBS lyase H 40.5 31 0.00067 19.4 2.2 25 250-284 2-26 (27)
432 cd03561 VHS VHS domain family; 39.8 1.4E+02 0.003 24.3 6.9 70 275-348 38-111 (133)
433 KOG1428 Inhibitor of type V ad 39.7 31 0.00067 39.2 3.6 48 12-59 3486-3545(3738)
434 KOG2933 Uncharacterized conser 39.6 2.8E+02 0.006 26.4 9.3 109 190-307 90-200 (334)
435 PF00096 zf-C2H2: Zinc finger, 39.5 9.7 0.00021 20.3 -0.0 11 14-24 2-12 (23)
436 PF15616 TerY-C: TerY-C metal 39.0 16 0.00035 29.8 1.2 44 9-59 74-117 (131)
437 COG3492 Uncharacterized protei 38.5 16 0.00036 27.3 1.0 13 33-45 42-54 (104)
438 PF04821 TIMELESS: Timeless pr 38.0 3.3E+02 0.0071 25.1 16.9 126 110-264 9-151 (266)
439 KOG4231 Intracellular membrane 37.7 33 0.00073 34.5 3.3 60 244-306 339-399 (763)
440 PF09986 DUF2225: Uncharacteri 37.6 8.6 0.00019 34.4 -0.7 51 11-62 4-63 (214)
441 KOG3896 Dynactin, subunit p62 36.8 10 0.00022 35.6 -0.3 53 7-59 19-82 (449)
442 PF00301 Rubredoxin: Rubredoxi 36.2 13 0.00029 24.4 0.3 14 7-20 29-42 (47)
443 PF03833 PolC_DP2: DNA polymer 36.0 12 0.00026 39.9 0.0 45 12-59 655-704 (900)
444 PF12830 Nipped-B_C: Sister ch 35.7 2.9E+02 0.0063 23.9 13.6 125 236-374 10-142 (187)
445 PF13248 zf-ribbon_3: zinc-rib 35.6 6.7 0.00015 22.1 -1.1 8 48-55 17-24 (26)
446 cd00729 rubredoxin_SM Rubredox 35.1 27 0.00058 21.1 1.4 10 47-56 18-27 (34)
447 KOG1020 Sister chromatid cohes 34.8 8.1E+02 0.018 28.8 14.3 126 206-352 795-924 (1692)
448 PRK11595 DNA utilization prote 34.7 26 0.00057 31.6 2.0 39 14-58 7-45 (227)
449 PRK09169 hypothetical protein; 34.6 9.6E+02 0.021 29.5 23.1 97 91-198 203-299 (2316)
450 COG5656 SXM1 Importin, protein 34.5 2.2E+02 0.0047 30.5 8.5 147 113-272 388-538 (970)
451 COG5098 Chromosome condensatio 34.4 2.1E+02 0.0046 30.3 8.3 157 234-396 240-419 (1128)
452 PF07814 WAPL: Wings apart-lik 33.9 2.6E+02 0.0056 27.1 8.9 94 276-372 23-116 (361)
453 COG4640 Predicted membrane pro 33.7 17 0.00037 35.1 0.6 40 34-74 3-42 (465)
454 KOG1812 Predicted E3 ubiquitin 33.3 21 0.00046 35.0 1.2 40 12-52 306-350 (384)
455 PF11791 Aconitase_B_N: Aconit 33.3 91 0.002 26.1 4.7 28 235-262 95-123 (154)
456 PF12726 SEN1_N: SEN1 N termin 33.1 5.1E+02 0.011 27.9 11.7 112 234-350 441-554 (727)
457 PF06676 DUF1178: Protein of u 32.8 19 0.0004 30.1 0.6 27 29-60 9-45 (148)
458 PF13894 zf-C2H2_4: C2H2-type 32.6 15 0.00033 19.3 0.1 10 14-23 2-11 (24)
459 PRK11088 rrmA 23S rRNA methylt 32.4 24 0.00053 32.6 1.4 25 12-36 2-29 (272)
460 KOG2199 Signal transducing ada 32.2 2E+02 0.0042 28.2 7.3 75 320-399 46-121 (462)
461 PF12530 DUF3730: Protein of u 31.8 3.8E+02 0.0083 24.1 14.2 137 236-392 2-151 (234)
462 KOG1087 Cytosolic sorting prot 31.4 1.8E+02 0.0039 29.4 7.3 76 320-396 39-116 (470)
463 PRK14559 putative protein seri 30.8 25 0.00055 36.9 1.4 44 13-65 2-46 (645)
464 KOG2842 Interferon-related pro 30.5 5.3E+02 0.012 25.3 14.7 216 108-332 73-301 (427)
465 PF14663 RasGEF_N_2: Rapamycin 30.4 1.4E+02 0.003 23.6 5.3 38 275-315 9-46 (115)
466 smart00531 TFIIE Transcription 30.3 18 0.00038 30.2 0.1 14 46-59 122-135 (147)
467 COG3809 Uncharacterized protei 29.9 11 0.00023 27.5 -1.1 12 13-24 2-13 (88)
468 PF01365 RYDR_ITPR: RIH domain 29.5 3.1E+02 0.0066 24.0 8.0 102 267-373 36-153 (207)
469 KOG2593 Transcription initiati 29.5 35 0.00076 33.5 1.9 64 9-82 125-200 (436)
470 PF04423 Rad50_zn_hook: Rad50 29.1 19 0.00041 24.2 0.1 11 49-59 22-32 (54)
471 PF04499 SAPS: SIT4 phosphatas 28.8 4.5E+02 0.0097 26.7 9.8 77 316-392 59-149 (475)
472 PF08216 CTNNBL: Catenin-beta- 28.7 1.1E+02 0.0024 24.1 4.2 41 336-377 62-102 (108)
473 KOG3475 60S ribosomal protein 28.1 25 0.00055 25.9 0.6 28 31-58 15-42 (92)
474 cd08050 TAF6 TATA Binding Prot 28.1 4.5E+02 0.0097 25.3 9.3 138 195-347 185-338 (343)
475 PRK00420 hypothetical protein; 27.5 24 0.00052 27.9 0.4 13 46-58 39-51 (112)
476 COG4098 comFA Superfamily II D 27.3 23 0.00051 33.9 0.4 31 11-41 38-69 (441)
477 PF03392 OS-D: Insect pheromon 26.6 65 0.0014 24.7 2.6 27 374-400 54-80 (95)
478 KOG1243 Protein kinase [Genera 26.6 7.1E+02 0.015 26.4 10.7 146 134-305 327-475 (690)
479 PF07923 N1221: N1221-like pro 26.5 1.6E+02 0.0035 27.6 5.9 52 234-285 60-127 (293)
480 KOG3726 Uncharacterized conser 26.5 34 0.00073 35.6 1.3 38 14-56 656-698 (717)
481 KOG2272 Focal adhesion protein 26.2 23 0.00051 31.9 0.2 45 10-57 161-205 (332)
482 TIGR02300 FYDLN_acid conserved 25.7 45 0.00098 26.9 1.6 14 46-59 25-38 (129)
483 PRK14890 putative Zn-ribbon RN 25.6 43 0.00093 23.1 1.3 18 35-55 39-56 (59)
484 TIGR03504 FimV_Cterm FimV C-te 25.4 89 0.0019 20.1 2.7 28 362-390 17-44 (44)
485 PF12874 zf-met: Zinc-finger o 25.1 24 0.00051 19.1 -0.0 13 13-25 1-13 (25)
486 PF01347 Vitellogenin_N: Lipop 24.9 8E+02 0.017 25.5 20.0 126 234-387 486-617 (618)
487 PHA02768 hypothetical protein; 24.8 98 0.0021 21.1 2.9 37 12-59 5-43 (55)
488 PF01363 FYVE: FYVE zinc finge 24.6 23 0.00051 25.0 -0.1 29 12-40 9-41 (69)
489 KOG0883 Cyclophilin type, U bo 24.5 59 0.0013 31.5 2.5 35 11-45 39-73 (518)
490 PLN03086 PRLI-interacting fact 24.4 76 0.0017 32.8 3.4 13 10-22 451-463 (567)
491 PF00412 LIM: LIM domain; Int 24.3 64 0.0014 21.5 2.1 31 11-41 25-56 (58)
492 KOG2068 MOT2 transcription fac 23.9 67 0.0015 30.4 2.7 47 13-60 250-300 (327)
493 PF14663 RasGEF_N_2: Rapamycin 23.8 1.9E+02 0.0041 22.9 4.9 78 235-326 9-87 (115)
494 cd00197 VHS_ENTH_ANTH VHS, ENT 23.3 3.6E+02 0.0078 20.9 7.7 69 321-390 39-113 (115)
495 smart00734 ZnF_Rad18 Rad18-lik 23.2 37 0.0008 19.1 0.5 8 50-57 4-11 (26)
496 PF06827 zf-FPG_IleRS: Zinc fi 23.2 27 0.00059 20.2 0.0 25 14-38 3-27 (30)
497 smart00064 FYVE Protein presen 23.2 47 0.001 23.3 1.2 32 12-43 10-45 (68)
498 KOG1243 Protein kinase [Genera 23.1 8.2E+02 0.018 26.0 10.4 104 235-349 294-398 (690)
499 PRK06393 rpoE DNA-directed RNA 22.8 45 0.00097 23.5 1.0 13 47-59 17-29 (64)
500 COG3058 FdhE Uncharacterized p 22.4 58 0.0013 30.1 1.9 44 12-56 185-234 (308)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.97 E-value=1.7e-29 Score=276.72 Aligned_cols=285 Identities=15% Similarity=0.181 Sum_probs=240.7
Q ss_pred hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHh-cCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHH
Q 015728 93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQ-LGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQK 171 (401)
Q Consensus 93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~-~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~ 171 (401)
..+..+++-|++..++++.|+.|+..|+.+++.++.||..|.+ .|+||.|+.+|++++ ..++++|+. +|.
T Consensus 13 ~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~--------~~vk~nAaa-aL~ 83 (2102)
T PLN03200 13 ASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGT--------LGAKVNAAA-VLG 83 (2102)
T ss_pred HHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCC--------HHHHHHHHH-HHH
Confidence 4455566667777667899999999999999999999999997 899999999999876 459999998 999
Q ss_pred hhcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHccCC----c
Q 015728 172 LLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHHN----S 247 (401)
Q Consensus 172 ~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~----~ 247 (401)
+++.+++....++ ..|+||+|+++|++|+.+.|++|+.+|++| +.++.+++++..|+...|+||+|+.++++. .
T Consensus 84 nLS~~e~nk~~Iv-~~GaIppLV~LL~sGs~eaKe~AA~AL~sL-S~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~ 161 (2102)
T PLN03200 84 VLCKEEDLRVKVL-LGGCIPPLLSLLKSGSAEAQKAAAEAIYAV-SSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDK 161 (2102)
T ss_pred HHhcCHHHHHHHH-HcCChHHHHHHHHCCCHHHHHHHHHHHHHH-HcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhH
Confidence 9997765544444 789999999999999999999999999999 765322366656554469999999999532 2
Q ss_pred hhHHHHHHHHHHhcCCCchhHH-HHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCC-HhhHHHHHhCCCcHHHHH
Q 015728 248 EASDAGVRAFSALCSTETNRKT-LVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAI-ENSKDALINNPNGVYALV 325 (401)
Q Consensus 248 ~~~~~a~~aL~~Ls~~~~n~~~-iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~-~~~~~~~~~~~g~i~~Lv 325 (401)
.+++.|+.+|+||+.+++|+.. ++++|+||.|+++|. ++++..+..|+++|.+++.+ ++.+..++ +.|+||.|+
T Consensus 162 ~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLs---S~d~~lQ~eAa~aLa~Lass~ee~~~aVI-eaGaVP~LV 237 (2102)
T PLN03200 162 VVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLS---SGNSDAQANAASLLARLMMAFESSISKVL-DAGAVKQLL 237 (2102)
T ss_pred HHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHc---CCCHHHHHHHHHHHHHHHcCChHHHHHHH-HCCCHHHHH
Confidence 2667888999999999998865 589999999999999 67889999999999999865 67888886 899999999
Q ss_pred HHHHhc-CChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCC--------CHHHHHHHHHHHHHHHHh
Q 015728 326 KMVFRV-SDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQC--------SNRTKTKARMLLKLLRSK 393 (401)
Q Consensus 326 ~~l~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~--------~~~~~~~A~~~L~~l~~~ 393 (401)
+ ++++ .++.+++.|+++|.+||.++.+.+..+++.|+|+.|+.++.++. +...++.|.|+|..+++.
T Consensus 238 ~-LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg 313 (2102)
T PLN03200 238 K-LLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGG 313 (2102)
T ss_pred H-HHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCC
Confidence 9 5654 45588999999999999998999999999999999999997652 134589999999998873
No 2
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.97 E-value=4.3e-29 Score=273.47 Aligned_cols=284 Identities=16% Similarity=0.209 Sum_probs=242.0
Q ss_pred hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHh
Q 015728 93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKL 172 (401)
Q Consensus 93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~ 172 (401)
..+..|.++|++ ++.+.|..|++.|++++..++.++..|+++|+||+|+++|++++. +++++|+| +|.|
T Consensus 446 ggIp~LV~LL~s--~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~--------~iqeeAaw-AL~N 514 (2102)
T PLN03200 446 EGVQLLISLLGL--SSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQ--------KAKEDSAT-VLWN 514 (2102)
T ss_pred CcHHHHHHHHcC--CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCH--------HHHHHHHH-HHHH
Confidence 356677787875 357899999999999999999999999999999999999998764 59999999 9999
Q ss_pred hcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchh-----------------------------
Q 015728 173 LLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETK----------------------------- 223 (401)
Q Consensus 173 l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~----------------------------- 223 (401)
++.++++.+.++.++|+|++|+++|++++.+.|+.|+++|.+| ....+++
T Consensus 515 La~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nL-i~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIls 593 (2102)
T PLN03200 515 LCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKL-VRTADAATISQLTALLLGDLPESKVHVLDVLGHVLS 593 (2102)
T ss_pred HhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH-HhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHh
Confidence 9988777788887889999999999999999999999999999 5322110
Q ss_pred -----hhhhhhccchHHHHHHHHHc-cCCchhHHHHHHHHHHhcC-CCchhHHHHhcCcHHHHHHHHHhhccccchHHHH
Q 015728 224 -----ELCCKLGKDDRLLREIISLV-HHNSEASDAGVRAFSALCS-TETNRKTLVQEGAINGLIAYISNALTRERSLAAI 296 (401)
Q Consensus 224 -----~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~a~~aL~~Ls~-~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~ 296 (401)
+.........|+|+.|+.+| +++...++.|+++|.+++. +++++..++..|+||+|+.+|+ +++.++++.
T Consensus 594 l~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLs---s~~~~v~ke 670 (2102)
T PLN03200 594 VASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLT---NNTEAVATQ 670 (2102)
T ss_pred hcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHh---cCChHHHHH
Confidence 00111111247899999999 5667799999999999995 6667899999999999999999 678889999
Q ss_pred HHHHHHHHhCC--HhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcC
Q 015728 297 AMARIEQLLAI--ENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQ 374 (401)
Q Consensus 297 a~~~L~~La~~--~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~ 374 (401)
|+++|.+|+.+ .+++..++ +.|+|++|++ ++++++....+.|+.+|.+|+.+. +.+.++..+|+|++|+.+|++|
T Consensus 671 AA~AL~nL~~~~~~~q~~~~v-~~GaV~pL~~-LL~~~d~~v~e~Al~ALanLl~~~-e~~~ei~~~~~I~~Lv~lLr~G 747 (2102)
T PLN03200 671 SARALAALSRSIKENRKVSYA-AEDAIKPLIK-LAKSSSIEVAEQAVCALANLLSDP-EVAAEALAEDIILPLTRVLREG 747 (2102)
T ss_pred HHHHHHHHHhCCCHHHHHHHH-HcCCHHHHHH-HHhCCChHHHHHHHHHHHHHHcCc-hHHHHHHhcCcHHHHHHHHHhC
Confidence 99999999954 34455665 8899999999 678888899999999999999985 5677899999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhhH
Q 015728 375 CSNRTKTKARMLLKLLRSKWA 395 (401)
Q Consensus 375 ~~~~~~~~A~~~L~~l~~~~~ 395 (401)
+++.|+.|+++|..|.++.+
T Consensus 748 -~~~~k~~Aa~AL~~L~~~~~ 767 (2102)
T PLN03200 748 -TLEGKRNAARALAQLLKHFP 767 (2102)
T ss_pred -ChHHHHHHHHHHHHHHhCCC
Confidence 99999999999999998665
No 3
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=9.2e-28 Score=232.56 Aligned_cols=295 Identities=12% Similarity=0.169 Sum_probs=249.6
Q ss_pred CCCCCCh----hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHH
Q 015728 86 PNYLATI----DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQF 161 (401)
Q Consensus 86 ~~~~~~~----~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~ 161 (401)
+.||++. ..++.+++.|... .++..|.+|++.|.+.++++...-+.++++|++|.|+.+|.+++. .+
T Consensus 98 ~~ppi~~vi~~G~v~~lV~~l~~~-~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~--------~v 168 (514)
T KOG0166|consen 98 RNPPIDEVIQSGVVPRLVEFLSRD-DNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSA--------DV 168 (514)
T ss_pred CCCCHHHHHHcCcHHHHHHHHccC-CChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcH--------HH
Confidence 4456553 7888899888744 448889999999999999999999999999999999999999885 49
Q ss_pred HHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhhcCCH-HHHHHHHHHHHHHHhccc-chhhhhhhhccchHHHHHH
Q 015728 162 VEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHGSC-SIKKRLCHLVEVIISSSH-ETKELCCKLGKDDRLLREI 239 (401)
Q Consensus 162 ~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~-~~~~~aa~~L~~l~s~~~-~~~~~~~~i~~~~g~i~~L 239 (401)
++.|+| +|.|++.+....+..+.+.|++++|+.++...+. ....+++|+|.|| +... +. ..+.....++|.|
T Consensus 169 ~eQavW-ALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNl-crgk~P~----P~~~~v~~iLp~L 242 (514)
T KOG0166|consen 169 REQAVW-ALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNL-CRGKNPS----PPFDVVAPILPAL 242 (514)
T ss_pred HHHHHH-HHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHH-HcCCCCC----CcHHHHHHHHHHH
Confidence 999999 9999999999999999999999999999987765 7888999999999 5433 21 1222223688999
Q ss_pred HHHc-cCCchhHHHHHHHHHHhcCCC-chhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhC
Q 015728 240 ISLV-HHNSEASDAGVRAFSALCSTE-TNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINN 317 (401)
Q Consensus 240 v~lL-~~~~~~~~~a~~aL~~Ls~~~-~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~ 317 (401)
..++ +.|.++...|.|||.+|+..+ +....+++.|++|.|+++|. ..+..++..|+.++.|++.+.+...+.+.+
T Consensus 243 ~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~---~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~ 319 (514)
T KOG0166|consen 243 LRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLG---HSSPKVVTPALRAIGNIVTGSDEQTQVVIN 319 (514)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHc---CCCcccccHHHhhccceeeccHHHHHHHHh
Confidence 9999 567889999999999999544 45566679999999999999 677788899999999999999998888889
Q ss_pred CCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH-hhHH
Q 015728 318 PNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS-KWAE 396 (401)
Q Consensus 318 ~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~-~~~e 396 (401)
.|++|.|..++.++.....++.|++++.||+.++.+..+.++++|.+|.|+++|+.+ ....|+.|+|++..+.. -.+|
T Consensus 320 ~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts~g~~~ 398 (514)
T KOG0166|consen 320 SGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTA-EFDIRKEAAWAISNLTSSGTPE 398 (514)
T ss_pred cChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhcc-chHHHHHHHHHHHhhcccCCHH
Confidence 999999999544344445888899999999999998899999999999999999998 89999999999987765 3344
Q ss_pred hhc
Q 015728 397 ELK 399 (401)
Q Consensus 397 ~~~ 399 (401)
.++
T Consensus 399 qi~ 401 (514)
T KOG0166|consen 399 QIK 401 (514)
T ss_pred HHH
Confidence 433
No 4
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.1e-27 Score=231.99 Aligned_cols=280 Identities=16% Similarity=0.170 Sum_probs=242.8
Q ss_pred hcChHHHHHHHHHHHHHHhcCch-hhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhc
Q 015728 106 EATLETKLQIVQKIHVVLRESPP-ASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLL 184 (401)
Q Consensus 106 ~~~~~~~~~a~~~L~~l~~~~~~-~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v 184 (401)
+++++.+..++..+|.+.+.... .-..++..|.||.||.+|...+. +.++.+|+| +|.|++.+..+..+.+
T Consensus 77 S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~-------~~lq~eAAW-aLTnIAsgtse~T~~v 148 (514)
T KOG0166|consen 77 SDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDN-------PTLQFEAAW-ALTNIASGTSEQTKVV 148 (514)
T ss_pred CCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCC-------hhHHHHHHH-HHHHHhcCchhhcccc
Confidence 45677899999999999976553 34455567999999999986553 679999999 9999999888887788
Q ss_pred ccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHccCCc--hhHHHHHHHHHHhcC
Q 015728 185 NEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHHNS--EASDAGVRAFSALCS 262 (401)
Q Consensus 185 ~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~--~~~~~a~~aL~~Ls~ 262 (401)
+++|++|.++.+|.+++..+++.|+|+|.|+ +.++. ..|..+... |++++|+.++..+. ...++++|+|.|||.
T Consensus 149 v~agavp~fi~Ll~s~~~~v~eQavWALgNI-agds~--~~Rd~vl~~-g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcr 224 (514)
T KOG0166|consen 149 VDAGAVPIFIQLLSSPSADVREQAVWALGNI-AGDSP--DCRDYVLSC-GALDPLLRLLNKSDKLSMLRNATWTLSNLCR 224 (514)
T ss_pred ccCCchHHHHHHhcCCcHHHHHHHHHHHhcc-ccCCh--HHHHHHHhh-cchHHHHHHhccccchHHHHHHHHHHHHHHc
Confidence 8999999999999999999999999999999 88773 777777775 99999999995433 599999999999998
Q ss_pred CCchhHHHH-hcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHH
Q 015728 263 TETNRKTLV-QEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAI 341 (401)
Q Consensus 263 ~~~n~~~iv-~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~ 341 (401)
+......+. -..++|.|..+|. +.|.++...|+++|.+|+.++..+.+++.+.|++|.||+ ++...+..++-.|+
T Consensus 225 gk~P~P~~~~v~~iLp~L~~ll~---~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~-lL~~~~~~v~~PaL 300 (514)
T KOG0166|consen 225 GKNPSPPFDVVAPILPALLRLLH---STDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVD-LLGHSSPKVVTPAL 300 (514)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHH-HHcCCCcccccHHH
Confidence 776555543 3679999999999 789999999999999999888888777779999999999 57777767888999
Q ss_pred HHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHHhhccC
Q 015728 342 NSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAEELKHV 401 (401)
Q Consensus 342 ~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e~~~~~ 401 (401)
+++.|+..+++...+.++..|+++.|..++.....+..|+.|.|++-.+.-..+|++++|
T Consensus 301 RaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaV 360 (514)
T KOG0166|consen 301 RAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAV 360 (514)
T ss_pred hhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHH
Confidence 999999999999999999999999999999855477899999999999999888888764
No 5
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=5.4e-28 Score=220.36 Aligned_cols=265 Identities=14% Similarity=0.146 Sum_probs=231.5
Q ss_pred hhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhc
Q 015728 105 HEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLL 184 (401)
Q Consensus 105 ~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v 184 (401)
+.+.-+.|+.|+++|.+|+.. +.||..|...|++.+|+++-++.+. .+|.++.. +|.+|+...+ +++.+
T Consensus 136 mtd~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLakskdi--------rvqrnatg-aLlnmThs~E-nRr~L 204 (550)
T KOG4224|consen 136 MTDGVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAKSKDI--------RVQRNATG-ALLNMTHSRE-NRRVL 204 (550)
T ss_pred cCCCcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhcccchh--------hHHHHHHH-HHHHhhhhhh-hhhhh
Confidence 445678899999999999988 5599999999999999998787764 49999999 8888986554 45566
Q ss_pred ccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchH--HHHHHHHHc-cCCchhHHHHHHHHHHhc
Q 015728 185 NEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDR--LLREIISLV-HHNSEASDAGVRAFSALC 261 (401)
Q Consensus 185 ~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g--~i~~Lv~lL-~~~~~~~~~a~~aL~~Ls 261 (401)
+.+|++|.|+.++++++..+|+.+..+|.++ +.+. .+|+.++++ | .+|.||.++ ++++.++..|..+|+||+
T Consensus 205 V~aG~lpvLVsll~s~d~dvqyycttaisnI-aVd~---~~Rk~Laqa-ep~lv~~Lv~Lmd~~s~kvkcqA~lALrnla 279 (550)
T KOG4224|consen 205 VHAGGLPVLVSLLKSGDLDVQYYCTTAISNI-AVDR---RARKILAQA-EPKLVPALVDLMDDGSDKVKCQAGLALRNLA 279 (550)
T ss_pred hccCCchhhhhhhccCChhHHHHHHHHhhhh-hhhH---HHHHHHHhc-ccchHHHHHHHHhCCChHHHHHHHHHHhhhc
Confidence 6899999999999999999999999999999 8876 788888876 6 899999999 567789999999999999
Q ss_pred CCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCC-hhHHHHH
Q 015728 262 STETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSD-HEGSENA 340 (401)
Q Consensus 262 ~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~-~~~~~~a 340 (401)
.+.+.+..++++|.+|.+++||+ ++.....-..+..+.+++.++-|--.|+ +.|++.+||+ +++.++ ++.+-+|
T Consensus 280 sdt~Yq~eiv~ag~lP~lv~Llq---s~~~plilasVaCIrnisihplNe~lI~-dagfl~pLVr-lL~~~dnEeiqchA 354 (550)
T KOG4224|consen 280 SDTEYQREIVEAGSLPLLVELLQ---SPMGPLILASVACIRNISIHPLNEVLIA-DAGFLRPLVR-LLRAGDNEEIQCHA 354 (550)
T ss_pred ccchhhhHHHhcCCchHHHHHHh---CcchhHHHHHHHHHhhcccccCccccee-cccchhHHHH-HHhcCCchhhhhhH
Confidence 99999999999999999999998 6777777888899999999998888886 9999999999 566654 4599999
Q ss_pred HHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 015728 341 INSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLR 391 (401)
Q Consensus 341 ~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~ 391 (401)
+.+|++|+..++..+..+.++|+|+.|..|+.++ .-.+++.-.+.+.+|+
T Consensus 355 vstLrnLAasse~n~~~i~esgAi~kl~eL~lD~-pvsvqseisac~a~La 404 (550)
T KOG4224|consen 355 VSTLRNLAASSEHNVSVIRESGAIPKLIELLLDG-PVSVQSEISACIAQLA 404 (550)
T ss_pred HHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcC-ChhHHHHHHHHHHHHH
Confidence 9999999998888888999999999999999888 5556666555555554
No 6
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=7.4e-27 Score=212.96 Aligned_cols=263 Identities=13% Similarity=0.164 Sum_probs=232.0
Q ss_pred ChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccC
Q 015728 108 TLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEE 187 (401)
Q Consensus 108 ~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~ 187 (401)
+...|+.|+..|.++.... +||+.++.+|++|.||.++++++. ++|+++.. .+.+++.+... +++++++
T Consensus 180 dirvqrnatgaLlnmThs~-EnRr~LV~aG~lpvLVsll~s~d~--------dvqyyctt-aisnIaVd~~~-Rk~Laqa 248 (550)
T KOG4224|consen 180 DIRVQRNATGALLNMTHSR-ENRRVLVHAGGLPVLVSLLKSGDL--------DVQYYCTT-AISNIAVDRRA-RKILAQA 248 (550)
T ss_pred hhhHHHHHHHHHHHhhhhh-hhhhhhhccCCchhhhhhhccCCh--------hHHHHHHH-HhhhhhhhHHH-HHHHHhc
Confidence 4668999999999998765 499999999999999999999884 59999999 99999976654 4566577
Q ss_pred C--chHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHccC-CchhHHHHHHHHHHhcCCC
Q 015728 188 S--KMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHH-NSEASDAGVRAFSALCSTE 264 (401)
Q Consensus 188 g--~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~a~~aL~~Ls~~~ 264 (401)
+ .|+.|+++++++++.+|..|..+|.+| +.+. ++...|+++ |.+|.+|.+|++ ..+..-+.+.+++|++..+
T Consensus 249 ep~lv~~Lv~Lmd~~s~kvkcqA~lALrnl-asdt---~Yq~eiv~a-g~lP~lv~Llqs~~~plilasVaCIrnisihp 323 (550)
T KOG4224|consen 249 EPKLVPALVDLMDDGSDKVKCQAGLALRNL-ASDT---EYQREIVEA-GSLPLLVELLQSPMGPLILASVACIRNISIHP 323 (550)
T ss_pred ccchHHHHHHHHhCCChHHHHHHHHHHhhh-cccc---hhhhHHHhc-CCchHHHHHHhCcchhHHHHHHHHHhhccccc
Confidence 7 899999999999999999999999999 8876 899999997 889999999954 4568889999999999999
Q ss_pred chhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCC-HhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHH
Q 015728 265 TNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAI-ENSKDALINNPNGVYALVKMVFRVSDHEGSENAINS 343 (401)
Q Consensus 265 ~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~-~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~ 343 (401)
-|-..|+++|.+.|||++|+- +.+++.+-.|..+|++|+.. ..++..|. +.|+||.+++ ++.++.-.+++.-..+
T Consensus 324 lNe~lI~dagfl~pLVrlL~~--~dnEeiqchAvstLrnLAasse~n~~~i~-esgAi~kl~e-L~lD~pvsvqseisac 399 (550)
T KOG4224|consen 324 LNEVLIADAGFLRPLVRLLRA--GDNEEIQCHAVSTLRNLAASSEHNVSVIR-ESGAIPKLIE-LLLDGPVSVQSEISAC 399 (550)
T ss_pred CcccceecccchhHHHHHHhc--CCchhhhhhHHHHHHHHhhhhhhhhHHHh-hcCchHHHHH-HHhcCChhHHHHHHHH
Confidence 999999999999999999995 56677999999999999984 55777775 8999999999 5566666888888888
Q ss_pred HHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728 344 LMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS 392 (401)
Q Consensus 344 L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~ 392 (401)
+..|+.+ ++.+..+.+.|.++.|+.++.+. +.+++.+|+++|-.|+.
T Consensus 400 ~a~Lal~-d~~k~~lld~gi~~iLIp~t~s~-s~Ev~gNaAaAL~Nlss 446 (550)
T KOG4224|consen 400 IAQLALN-DNDKEALLDSGIIPILIPWTGSE-SEEVRGNAAAALINLSS 446 (550)
T ss_pred HHHHHhc-cccHHHHhhcCCcceeecccCcc-chhhcccHHHHHHhhhh
Confidence 8888876 46788999999999999999888 99999999999999886
No 7
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.93 E-value=5.4e-25 Score=199.28 Aligned_cols=278 Identities=17% Similarity=0.148 Sum_probs=235.3
Q ss_pred hcChHHHHHHHHHHHHHHhcCch-hhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhc
Q 015728 106 EATLETKLQIVQKIHVVLRESPP-ASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLL 184 (401)
Q Consensus 106 ~~~~~~~~~a~~~L~~l~~~~~~-~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v 184 (401)
+++-+.|..|+.+.|.+.+.... --+.++++|++|.+|.++.+... ...+.+|+| +|.|++.+.....+++
T Consensus 82 SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~-------~mlqfEAaW-alTNiaSGtt~QTkvV 153 (526)
T COG5064 82 SDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQR-------DMLQFEAAW-ALTNIASGTTQQTKVV 153 (526)
T ss_pred hhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcch-------hHHHHHHHH-HHhhhccCcccceEEE
Confidence 46789999999999998865433 56677799999999999964432 348899999 9999998888888888
Q ss_pred ccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cCC--chhHHHHHHHHHHhc
Q 015728 185 NEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-HHN--SEASDAGVRAFSALC 261 (401)
Q Consensus 185 ~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~--~~~~~~a~~aL~~Ls 261 (401)
+++|++|.++.+|.+++.++++.+.|+|.|+ +.+++ ..|..+... |++.+++.+| +.. ....+++.|.|.|||
T Consensus 154 vd~~AVPlfiqlL~s~~~~V~eQavWALGNi-AGDS~--~~RD~vL~~-galeplL~ll~ss~~~ismlRn~TWtLSNlc 229 (526)
T COG5064 154 VDAGAVPLFIQLLSSTEDDVREQAVWALGNI-AGDSE--GCRDYVLQC-GALEPLLGLLLSSAIHISMLRNATWTLSNLC 229 (526)
T ss_pred EeCCchHHHHHHHcCchHHHHHHHHHHhccc-cCCch--hHHHHHHhc-CchHHHHHHHHhccchHHHHHHhHHHHHHhh
Confidence 8999999999999999999999999999999 98873 666666664 9999999999 333 469999999999999
Q ss_pred CCC--chhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHH
Q 015728 262 STE--TNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSEN 339 (401)
Q Consensus 262 ~~~--~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~ 339 (401)
... ..-+.-+ .-++|.|.+|+. +.++++...|+++|.+|+..+..+..++.+.|.-+.||++ +.+.+..++..
T Consensus 230 RGknP~P~w~~i-sqalpiL~KLiy---s~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvEl-Ls~~sa~iqtP 304 (526)
T COG5064 230 RGKNPPPDWSNI-SQALPILAKLIY---SRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVEL-LSHESAKIQTP 304 (526)
T ss_pred CCCCCCCchHHH-HHHHHHHHHHHh---hcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHH-hcCccccccCH
Confidence 643 3222222 237999999999 7889999999999999999988887777799999999995 55666688999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHHhhccC
Q 015728 340 AINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAEELKHV 401 (401)
Q Consensus 340 a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e~~~~~ 401 (401)
|++...||..+++...+.++..|+++.+..+|.+. .+..|+.|.|.+..+.--..|++++|
T Consensus 305 alR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~-ke~irKEaCWTiSNITAGnteqiqav 365 (526)
T COG5064 305 ALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSP-KENIRKEACWTISNITAGNTEQIQAV 365 (526)
T ss_pred HHHhhcCeeecCccceehheecccHHHHHHHhcCh-hhhhhhhhheeecccccCCHHHHHHH
Confidence 99999999999888888999999999999999887 77999999999988877677777653
No 8
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.91 E-value=3e-23 Score=188.06 Aligned_cols=284 Identities=11% Similarity=0.151 Sum_probs=240.4
Q ss_pred CChhhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHH
Q 015728 90 ATIDSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCV 169 (401)
Q Consensus 90 ~~~~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~ 169 (401)
++...++.+++.+.+... .=.|++|++.|.+.+++.....+.++++|++|.+++||.++.. ++++.++| +
T Consensus 111 IdaGvVpRfvefm~~~q~-~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~--------~V~eQavW-A 180 (526)
T COG5064 111 IDAGVVPRFVEFMDEIQR-DMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTED--------DVREQAVW-A 180 (526)
T ss_pred HhccccHHHHHHHHhcch-hHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchH--------HHHHHHHH-H
Confidence 556889999998854432 3467899999999999998888888899999999999998875 49999999 9
Q ss_pred HHhhcCCchhhhhhcccCCchHHHHHHhhcCCH--HHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cCC
Q 015728 170 QKLLLVGETESLNLLNEESKMESFIVLFEHGSC--SIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-HHN 246 (401)
Q Consensus 170 L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~--~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~ 246 (401)
|.|++.+.+.++..+-+.|++.+++.+|.++.. ....++.|+|.|| +....-+..-..|. -++|.|.+++ ..+
T Consensus 181 LGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNl-cRGknP~P~w~~is---qalpiL~KLiys~D 256 (526)
T COG5064 181 LGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNL-CRGKNPPPDWSNIS---QALPILAKLIYSRD 256 (526)
T ss_pred hccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHh-hCCCCCCCchHHHH---HHHHHHHHHHhhcC
Confidence 999999998999998899999999999987644 7778999999999 54321012223332 4689999999 578
Q ss_pred chhHHHHHHHHHHhcCCCch-hHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHH
Q 015728 247 SEASDAGVRAFSALCSTETN-RKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALV 325 (401)
Q Consensus 247 ~~~~~~a~~aL~~Ls~~~~n-~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv 325 (401)
+++...|.|||.+|+..+.. ...+++.|.-+.|+++|. +++..++..|+..+.++....+.+.+++.+.|+++.+-
T Consensus 257 ~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs---~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~ 333 (526)
T COG5064 257 PEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLS---HESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFR 333 (526)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhc---CccccccCHHHHhhcCeeecCccceehheecccHHHHH
Confidence 89999999999999976665 455679999999999999 67888899999999999999888887777999999999
Q ss_pred HHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728 326 KMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS 392 (401)
Q Consensus 326 ~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~ 392 (401)
. ++.+.....++.|.+.+.||..++.+..+.+++.+.+|+|+++|... .-..|+.|.|++-....
T Consensus 334 ~-lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~a-e~k~kKEACWAisNats 398 (526)
T COG5064 334 S-LLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSA-EYKIKKEACWAISNATS 398 (526)
T ss_pred H-HhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHH-HHHHHHHHHHHHHhhhc
Confidence 9 56665558899999999999999888888999999999999999887 88999999999876654
No 9
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.83 E-value=3.6e-18 Score=155.03 Aligned_cols=284 Identities=15% Similarity=0.206 Sum_probs=236.5
Q ss_pred CChhhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHH
Q 015728 90 ATIDSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCV 169 (401)
Q Consensus 90 ~~~~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~ 169 (401)
.|.++.+.+.++|....++.+.....++.++..|-.++.||+.|.+.|+.+.+...|..... .++..+..+ +
T Consensus 142 ~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk-------~~~VRel~~-a 213 (461)
T KOG4199|consen 142 FDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGK-------TRTVRELYD-A 213 (461)
T ss_pred hccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCc-------cHHHHHHHH-H
Confidence 66789999999998888889999999999999999999999999999999999988865543 236667777 7
Q ss_pred HHhhcCCch----------hhhhhcccCCchHHHHHHhhcC-CHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHH
Q 015728 170 QKLLLVGET----------ESLNLLNEESKMESFIVLFEHG-SCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLRE 238 (401)
Q Consensus 170 L~~l~~~~~----------~~~~~v~~~g~i~~Lv~~L~~~-~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~ 238 (401)
++.|..+|+ +.+.+. ..|++..|++.++-+ ++.+...+..+|..| +..+ +.++.|.++ |++..
T Consensus 214 ~r~l~~dDDiRV~fg~ah~hAr~ia-~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~l-AVr~---E~C~~I~e~-GGl~t 287 (461)
T KOG4199|consen 214 IRALLTDDDIRVVFGQAHGHARTIA-KEGILTALTEALQAGIDPDSLVSLSTTLKAL-AVRD---EICKSIAES-GGLDT 287 (461)
T ss_pred HHHhcCCCceeeecchhhHHHHHHH-HhhhHHHHHHHHHccCCccHHHHHHHHHHHH-HHHH---HHHHHHHHc-cCHHH
Confidence 777777664 335455 567888999999866 677888888999999 8876 999999997 77899
Q ss_pred HHHHccC-C----chhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHh-CCHhhHH
Q 015728 239 IISLVHH-N----SEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLL-AIENSKD 312 (401)
Q Consensus 239 Lv~lL~~-~----~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La-~~~~~~~ 312 (401)
|++++.+ + .++.+.++..|+.|+.+++++..||+.|+.+.++.++..+ .+++.+.+.++.++..|+ +.++...
T Consensus 288 l~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h-~~~p~Vi~~~~a~i~~l~LR~pdhsa 366 (461)
T KOG4199|consen 288 LLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRH-SDDPLVIQEVMAIISILCLRSPDHSA 366 (461)
T ss_pred HHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHc-CCChHHHHHHHHHHHHHHhcCcchHH
Confidence 9999943 2 2377899999999999999999999999999999999754 678899999999999999 5788888
Q ss_pred HHHhCCCcHHHHHHHHHhcC-ChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 015728 313 ALINNPNGVYALVKMVFRVS-DHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLR 391 (401)
Q Consensus 313 ~~~~~~g~i~~Lv~~l~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~ 391 (401)
.++ +.|+-...|+.|-... ...++++|.+.+.||...+.+.+ +.+-..+++.|+..-... .+..+..|..+||-|.
T Consensus 367 ~~i-e~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~-~~~l~~GiE~Li~~A~~~-h~tce~~akaALRDLG 443 (461)
T KOG4199|consen 367 KAI-EAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENR-TILLANGIEKLIRTAKAN-HETCEAAAKAALRDLG 443 (461)
T ss_pred HHH-hcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhcc-chHHhccHHHHHHHHHhc-CccHHHHHHHHHHhcC
Confidence 886 8888888888776554 34578999999999999988887 556666788888887776 7778888888898765
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.81 E-value=6.3e-18 Score=172.80 Aligned_cols=217 Identities=12% Similarity=0.138 Sum_probs=184.4
Q ss_pred HHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHH
Q 015728 160 QFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREI 239 (401)
Q Consensus 160 ~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~L 239 (401)
.+...+.. +|.||+.+..... .+.+.|.|+.|+.+|++++.+....++.+|.+| |... +||..|++. |+|++|
T Consensus 264 qLlrv~~~-lLlNLAed~~ve~-kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkL-Si~~---ENK~~m~~~-giV~kL 336 (708)
T PF05804_consen 264 QLLRVAFY-LLLNLAEDPRVEL-KMVNKGIVSLLVKCLDRENEELLILAVTFLKKL-SIFK---ENKDEMAES-GIVEKL 336 (708)
T ss_pred HHHHHHHH-HHHHHhcChHHHH-HHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHH-cCCH---HHHHHHHHc-CCHHHH
Confidence 35667777 8999996654444 455889999999999999999999999999999 9987 999999986 999999
Q ss_pred HHHcc-CCchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCC
Q 015728 240 ISLVH-HNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNP 318 (401)
Q Consensus 240 v~lL~-~~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~ 318 (401)
++++. ++.+.+..++++|+|||.++++|.+|++.|+||.|+.+|. ++ ..+..++.+|++|+.++++|..+. ..
T Consensus 337 ~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~---d~--~~~~val~iLy~LS~dd~~r~~f~-~T 410 (708)
T PF05804_consen 337 LKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLK---DP--NFREVALKILYNLSMDDEARSMFA-YT 410 (708)
T ss_pred HHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhC---CC--chHHHHHHHHHHhccCHhhHHHHh-hc
Confidence 99994 5667999999999999999999999999999999999998 33 356779999999999999999996 88
Q ss_pred CcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhh
Q 015728 319 NGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKW 394 (401)
Q Consensus 319 g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~ 394 (401)
++||.++++++..+++..+..++.++.||+.+. ...+.+.+.|+++.|+.......+ ....+++|.++.|.
T Consensus 411 dcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~-rnaqlm~~g~gL~~L~~ra~~~~D----~lLlKlIRNiS~h~ 481 (708)
T PF05804_consen 411 DCIPQLMQMLLENSEEEVQLELIALLINLALNK-RNAQLMCEGNGLQSLMKRALKTRD----PLLLKLIRNISQHD 481 (708)
T ss_pred chHHHHHHHHHhCCCccccHHHHHHHHHHhcCH-HHHHHHHhcCcHHHHHHHHHhccc----HHHHHHHHHHHhcC
Confidence 999999998888777677777889999999875 555789999999999988655422 33457888888854
No 11
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.79 E-value=2.9e-17 Score=167.99 Aligned_cols=257 Identities=14% Similarity=0.140 Sum_probs=212.7
Q ss_pred hHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCC
Q 015728 109 LETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEES 188 (401)
Q Consensus 109 ~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g 188 (401)
...-+.+...|.+++... .++..+.+.|+|+.|+++|.+.+ .++...+++ +|..|+...++ +..+.+.|
T Consensus 263 eqLlrv~~~lLlNLAed~-~ve~kM~~~~iV~~Lv~~Ldr~n--------~ellil~v~-fLkkLSi~~EN-K~~m~~~g 331 (708)
T PF05804_consen 263 EQLLRVAFYLLLNLAEDP-RVELKMVNKGIVSLLVKCLDREN--------EELLILAVT-FLKKLSIFKEN-KDEMAESG 331 (708)
T ss_pred HHHHHHHHHHHHHHhcCh-HHHHHHHhcCCHHHHHHHHcCCC--------HHHHHHHHH-HHHHHcCCHHH-HHHHHHcC
Confidence 334455666677877654 58888889999999999998775 458888899 99999987765 45566899
Q ss_pred chHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHccCCchhHHHHHHHHHHhcCCCchhH
Q 015728 189 KMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHHNSEASDAGVRAFSALCSTETNRK 268 (401)
Q Consensus 189 ~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~a~~aL~~Ls~~~~n~~ 268 (401)
.|++|++++++++.+.+..+..+|.|| |.+. ++|..|+.. |+||.|+.+|..+ ..+..+..+|++||.++++|.
T Consensus 332 iV~kL~kLl~s~~~~l~~~aLrlL~NL-Sfd~---~~R~~mV~~-GlIPkLv~LL~d~-~~~~val~iLy~LS~dd~~r~ 405 (708)
T PF05804_consen 332 IVEKLLKLLPSENEDLVNVALRLLFNL-SFDP---ELRSQMVSL-GLIPKLVELLKDP-NFREVALKILYNLSMDDEARS 405 (708)
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHh-CcCH---HHHHHHHHC-CCcHHHHHHhCCC-chHHHHHHHHHHhccCHhhHH
Confidence 999999999999999999999999999 9987 899999986 9999999999643 355679999999999999999
Q ss_pred HHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHh
Q 015728 269 TLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMIC 348 (401)
Q Consensus 269 ~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~ 348 (401)
.+...++||.|+++|-+ .++..+...+++++.||+.+..+...+. +.|+++.|++..++..++ ..+.++.||+
T Consensus 406 ~f~~TdcIp~L~~~Ll~--~~~~~v~~eliaL~iNLa~~~rnaqlm~-~g~gL~~L~~ra~~~~D~----lLlKlIRNiS 478 (708)
T PF05804_consen 406 MFAYTDCIPQLMQMLLE--NSEEEVQLELIALLINLALNKRNAQLMC-EGNGLQSLMKRALKTRDP----LLLKLIRNIS 478 (708)
T ss_pred HHhhcchHHHHHHHHHh--CCCccccHHHHHHHHHHhcCHHHHHHHH-hcCcHHHHHHHHHhcccH----HHHHHHHHHH
Confidence 99999999999999875 4566677778999999999999998887 778899999977766553 2557999999
Q ss_pred cCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 015728 349 CDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLR 391 (401)
Q Consensus 349 ~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~ 391 (401)
.+++..+..+ .+.|..|+.++..+.++...-.+.++|..|.
T Consensus 479 ~h~~~~k~~f--~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~ 519 (708)
T PF05804_consen 479 QHDGPLKELF--VDFIGDLAKIVSSGDSEEFVVECLGILANLT 519 (708)
T ss_pred hcCchHHHHH--HHHHHHHHHHhhcCCcHHHHHHHHHHHHhcc
Confidence 9986665444 3588999999887766777777777777764
No 12
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.69 E-value=8.2e-16 Score=154.20 Aligned_cols=278 Identities=14% Similarity=0.128 Sum_probs=218.3
Q ss_pred HHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCC
Q 015728 97 TLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVG 176 (401)
Q Consensus 97 ~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~ 176 (401)
...+.|. ...+..|..|...|+.+|..+.+.|..+.+.|+|+.||.+|.+... ++|..|++ +|+||..+
T Consensus 237 e~i~mL~--~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~--------evq~~acg-aLRNLvf~ 305 (717)
T KOG1048|consen 237 EVISMLM--SQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRND--------EVQRQACG-ALRNLVFG 305 (717)
T ss_pred HHHHHHh--ccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcH--------HHHHHHHH-HHHhhhcc
Confidence 3444555 3456799999999999999999999999999999999999998874 59999999 99999976
Q ss_pred chh--hhhhcccCCchHHHHHHhhc-CCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc----cC----
Q 015728 177 ETE--SLNLLNEESKMESFIVLFEH-GSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV----HH---- 245 (401)
Q Consensus 177 ~~~--~~~~v~~~g~i~~Lv~~L~~-~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL----~~---- 245 (401)
... ++-.|.+.++|+.++++|+. ++.++++..+.+|+|| +..+ ..|..|.. .+++.|..-+ ++
T Consensus 306 ~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNL-SS~D---~lK~~ii~--~al~tLt~~vI~P~Sgw~~~ 379 (717)
T KOG1048|consen 306 KSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNL-SSND---ALKMLIIT--SALSTLTDNVIIPHSGWEEE 379 (717)
T ss_pred cCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcc-cchh---HHHHHHHH--HHHHHHHHhhcccccccCCC
Confidence 655 55556689999999999986 7999999999999999 7665 78888876 4678887755 21
Q ss_pred -------CchhHHHHHHHHHHhcC-CCchhHHHHh-cCcHHHHHHHHHhh---ccccchHHHHHHHHHHHHhCCHh----
Q 015728 246 -------NSEASDAGVRAFSALCS-TETNRKTLVQ-EGAINGLIAYISNA---LTRERSLAAIAMARIEQLLAIEN---- 309 (401)
Q Consensus 246 -------~~~~~~~a~~aL~~Ls~-~~~n~~~iv~-~G~v~~Lv~lL~~~---~~~~~~~~~~a~~~L~~La~~~~---- 309 (401)
+.++..+++.+|+|++. ..+.|.+|.+ .|.|..|+..+++. ..-+...+++++.+|.||+..-+
T Consensus 380 ~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp 459 (717)
T KOG1048|consen 380 PAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVP 459 (717)
T ss_pred CcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcC
Confidence 13478999999999996 7788999987 78999999999753 13356788999999999985211
Q ss_pred --hH--------------------------HHHH---------------------hCCCcHHHHHHHHHhcCChhHHHHH
Q 015728 310 --SK--------------------------DALI---------------------NNPNGVYALVKMVFRVSDHEGSENA 340 (401)
Q Consensus 310 --~~--------------------------~~~~---------------------~~~g~i~~Lv~~l~~~~~~~~~~~a 340 (401)
.+ .... -+..+|..-..+|....+....|.+
T Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEas 539 (717)
T KOG1048|consen 460 PKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEAS 539 (717)
T ss_pred HhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHh
Confidence 00 0100 0112344434434455677899999
Q ss_pred HHHHHHHhcCCH----HHHHHH-HHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728 341 INSLMMICCDSL----QAREEA-ICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS 392 (401)
Q Consensus 341 ~~~L~~l~~~~~----~~~~~~-~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~ 392 (401)
+.+|.||+.... ..+..+ .++.+.+.|++|++.+ ++.+-+.++.+|+.++.
T Consensus 540 aGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~-~~~vv~s~a~~LrNls~ 595 (717)
T KOG1048|consen 540 AGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRND-DSDVVRSAAGALRNLSR 595 (717)
T ss_pred hhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcC-CchHHHHHHHHHhhhcc
Confidence 999999987753 455566 7999999999999999 88888899999998876
No 13
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.63 E-value=3e-16 Score=115.43 Aligned_cols=72 Identities=42% Similarity=0.794 Sum_probs=62.2
Q ss_pred CCCcccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCCcHHHHHHHHHHHHhCC
Q 015728 9 IPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLRHLINQWLQMGG 80 (401)
Q Consensus 9 ~~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~n~~l~~~i~~~~~~~~ 80 (401)
+|++|.||||+++|.+||.+++||+|++.||++|+..+...||.|+..+...++.+|..++..|+.|..+|.
T Consensus 1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~~ 72 (73)
T PF04564_consen 1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAENK 72 (73)
T ss_dssp SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHCT
T ss_pred CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHHcc
Confidence 478999999999999999999999999999999999768899999999998899999999999999999873
No 14
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.62 E-value=4.7e-14 Score=147.47 Aligned_cols=279 Identities=14% Similarity=0.104 Sum_probs=209.7
Q ss_pred ChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcc----cchhhhHHHHHHHHHHHHHhhcCCchhhhhh
Q 015728 108 TLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAES----KFSQVYVQFVEESLSCVQKLLLVGETESLNL 183 (401)
Q Consensus 108 ~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~----~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~ 183 (401)
+-+-|..|+.....-.+.++++|..+.+.|++..+-.||.-.... .-+....-++.+|.. +|.||++++.++|..
T Consensus 310 ~~~H~lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~M-ALTNLTFGDv~NKa~ 388 (2195)
T KOG2122|consen 310 SDEHQLCAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGM-ALTNLTFGDVANKAT 388 (2195)
T ss_pred ccchhhHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH-Hhhccccccccchhh
Confidence 445566344444444456677999999999999999987422110 011235668899999 999999999988776
Q ss_pred c-ccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cC-CchhHHHHHHHHHHh
Q 015728 184 L-NEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-HH-NSEASDAGVRAFSAL 260 (401)
Q Consensus 184 v-~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~-~~~~~~~a~~aL~~L 260 (401)
+ ...|+|..+|..|.+...+..+--+.+|.|| |...+. ..|..+-+. |-+-.|+..- +. .....+..+.|||||
T Consensus 389 LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNL-SWRAD~-nmKkvLrE~-GsVtaLa~~al~~~kEsTLKavLSALWNL 465 (2195)
T KOG2122|consen 389 LCSQRGFMEAVVAQLISAPEELLQVYASVLRNL-SWRADS-NMKKVLRET-GSVTALAACALRNKKESTLKAVLSALWNL 465 (2195)
T ss_pred hhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhc-cccccc-cHHHHHHhh-hhHHHHHHHHHHhcccchHHHHHHHHhhh
Confidence 6 5679999999999999889999999999999 886431 445555554 7778887755 43 334789999999999
Q ss_pred c-CCCchhHHHHh-cCcHHHHHHHHHhh-ccccchHHHHHHHHHHHHhC---CHhhHHHHHhCCCcHHHHHHHHHhcCCh
Q 015728 261 C-STETNRKTLVQ-EGAINGLIAYISNA-LTRERSLAAIAMARIEQLLA---IENSKDALINNPNGVYALVKMVFRVSDH 334 (401)
Q Consensus 261 s-~~~~n~~~iv~-~G~v~~Lv~lL~~~-~~~~~~~~~~a~~~L~~La~---~~~~~~~~~~~~g~i~~Lv~~l~~~~~~ 334 (401)
+ .+.+|+..|-+ -|++-+||.+|.-. ++..-.+.+.|-++|.|.+. ..+..++|.++..++..|++ .+++.+-
T Consensus 466 SAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ-~LKS~SL 544 (2195)
T KOG2122|consen 466 SAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQ-HLKSHSL 544 (2195)
T ss_pred hhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHH-Hhhhcce
Confidence 9 57789999976 78999999999742 12234677888899988774 23344444468899999999 4666666
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 015728 335 EGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLR 391 (401)
Q Consensus 335 ~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~ 391 (401)
.+..++..+||||+..+++-++.+++.|+|+.|..|+.+.+..-.+-.|+++..+|.
T Consensus 545 TiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln 601 (2195)
T KOG2122|consen 545 TIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLN 601 (2195)
T ss_pred EEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhc
Confidence 788899999999999999989999999999999999988744455555555544443
No 15
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.54 E-value=5.2e-12 Score=115.29 Aligned_cols=278 Identities=15% Similarity=0.230 Sum_probs=211.9
Q ss_pred hcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcc
Q 015728 106 EATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLN 185 (401)
Q Consensus 106 ~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~ 185 (401)
+.+...-+.++..|-.+...-| .+.++-+...++.+|....++ .++-..-+. .+..-+..++.+++.++
T Consensus 118 ~~~~~~l~ksL~al~~lt~~qp----dl~da~g~~vvv~lL~~~~~~------~dlt~~~~~-~v~~Ac~~hE~nrQ~~m 186 (461)
T KOG4199|consen 118 SPNESVLKKSLEAINSLTHKQP----DLFDAEAMAVVLKLLALKVES------EEVTLLTLQ-WLQKACIMHEVNRQLFM 186 (461)
T ss_pred CCchhHHHHHHHHHHHhhcCCc----chhccccHHHHHHHHhcccch------HHHHHHHHH-HHHHHHHHhHHHHHHHH
Confidence 3456677888888888887776 455777899999999765543 344444444 33333334455566666
Q ss_pred cCCchHHHHHHhh-cCCHHHHHHHHHHHHHHHhcccc-------hhhhhhhhccchHHHHHHHHHcc--CCchhHHHHHH
Q 015728 186 EESKMESFIVLFE-HGSCSIKKRLCHLVEVIISSSHE-------TKELCCKLGKDDRLLREIISLVH--HNSEASDAGVR 255 (401)
Q Consensus 186 ~~g~i~~Lv~~L~-~~~~~~~~~aa~~L~~l~s~~~~-------~~~~~~~i~~~~g~i~~Lv~lL~--~~~~~~~~a~~ 255 (401)
+.+.++.+...|. .|.......+.++++-| -.+++ ...+.+.|+.. |++..|+..+. -++.....+..
T Consensus 187 ~~~il~Li~~~l~~~gk~~~VRel~~a~r~l-~~dDDiRV~fg~ah~hAr~ia~e-~~l~~L~Eal~A~~dp~~L~~l~~ 264 (461)
T KOG4199|consen 187 ELKILELILQVLNREGKTRTVRELYDAIRAL-LTDDDIRVVFGQAHGHARTIAKE-GILTALTEALQAGIDPDSLVSLST 264 (461)
T ss_pred HhhHHHHHHHHHcccCccHHHHHHHHHHHHh-cCCCceeeecchhhHHHHHHHHh-hhHHHHHHHHHccCCccHHHHHHH
Confidence 8998888887764 45455666777888888 55542 12445556553 66788998883 35678888999
Q ss_pred HHHHhcCCCchhHHHHhcCcHHHHHHHHHhhc-cccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcC-C
Q 015728 256 AFSALCSTETNRKTLVQEGAINGLIAYISNAL-TRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVS-D 333 (401)
Q Consensus 256 aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~-~ 333 (401)
+|..|+..++..+.+++.|++..|++++.+++ .+...+...++.+|..|+.+++.+..|+ +.|+.+.++.++++.+ +
T Consensus 265 tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV-~~gg~~~ii~l~~~h~~~ 343 (461)
T KOG4199|consen 265 TLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIV-EKGGLDKIITLALRHSDD 343 (461)
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHH-HhcChHHHHHHHHHcCCC
Confidence 99999999999999999999999999998521 1233466778999999999999999998 7899999999888764 6
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCC-HHHHHHHHHHHHHHHHhhHHh
Q 015728 334 HEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCS-NRTKTKARMLLKLLRSKWAEE 397 (401)
Q Consensus 334 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~-~~~~~~A~~~L~~l~~~~~e~ 397 (401)
|.+.+.+..++.-||-..++....+++.|+-..-++-|+.-+. -.+++.|.+++|.+..+..|-
T Consensus 344 p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~ 408 (461)
T KOG4199|consen 344 PLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAEN 408 (461)
T ss_pred hHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhc
Confidence 7788889999999998888777799999999999999976544 368999999999998866553
No 16
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.54 E-value=6.5e-13 Score=121.27 Aligned_cols=198 Identities=13% Similarity=0.140 Sum_probs=168.0
Q ss_pred cCCchHHHHHHhhc-CCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cCCchhHHHHHHHHHHhcCC
Q 015728 186 EESKMESFIVLFEH-GSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-HHNSEASDAGVRAFSALCST 263 (401)
Q Consensus 186 ~~g~i~~Lv~~L~~-~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~a~~aL~~Ls~~ 263 (401)
+++.++.|+.+|++ .++..++.+..++.+. +..+ .++..|.+. |+++.+..+| .+++.++..|+++|.|++.+
T Consensus 10 ~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~-aaf~---~nq~~Ir~~-Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~ 84 (254)
T PF04826_consen 10 EAQELQKLLCLLESTEDPFIQEKALIALGNS-AAFP---FNQDIIRDL-GGISLIGSLLNDPNPSVREKALNALNNLSVN 84 (254)
T ss_pred CHHHHHHHHHHHhcCCChHHHHHHHHHHHhh-ccCh---hHHHHHHHc-CCHHHHHHHcCCCChHHHHHHHHHHHhcCCC
Confidence 77889999999985 4789999999999999 8776 889999886 7889999999 46778999999999999999
Q ss_pred CchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHH
Q 015728 264 ETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINS 343 (401)
Q Consensus 264 ~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~ 343 (401)
.+|+..+-. .|+.+.+..... .-+..++..++.+|.+|+..++++..+. +.|+.++. |+..++...+.+++++
T Consensus 85 ~en~~~Ik~--~i~~Vc~~~~s~-~lns~~Q~agLrlL~nLtv~~~~~~~l~---~~i~~ll~-LL~~G~~~~k~~vLk~ 157 (254)
T PF04826_consen 85 DENQEQIKM--YIPQVCEETVSS-PLNSEVQLAGLRLLTNLTVTNDYHHMLA---NYIPDLLS-LLSSGSEKTKVQVLKV 157 (254)
T ss_pred hhhHHHHHH--HHHHHHHHHhcC-CCCCHHHHHHHHHHHccCCCcchhhhHH---hhHHHHHH-HHHcCChHHHHHHHHH
Confidence 999998743 688888876532 3467889999999999999888888875 47999999 5677787999999999
Q ss_pred HHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHH
Q 015728 344 LMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAE 396 (401)
Q Consensus 344 L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e 396 (401)
|++|+.+ +...++++.++++..|+.|++...+...-..+..++..+.+++.-
T Consensus 158 L~nLS~n-p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~ 209 (254)
T PF04826_consen 158 LVNLSEN-PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKK 209 (254)
T ss_pred HHHhccC-HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCc
Confidence 9999987 566679999999999999998775677788888888888775543
No 17
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.54 E-value=6.7e-13 Score=121.21 Aligned_cols=194 Identities=14% Similarity=0.136 Sum_probs=161.5
Q ss_pred HhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHH
Q 015728 134 IQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVE 213 (401)
Q Consensus 134 ~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~ 213 (401)
.+++-+..|+.+|++..+ +.+++.++. ++.+.+..+ .++.++.+.|+++.+..+|.++++.+|+.|..+|.
T Consensus 9 l~~~~l~~Ll~lL~~t~d-------p~i~e~al~-al~n~aaf~-~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~ 79 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTED-------PFIQEKALI-ALGNSAAFP-FNQDIIRDLGGISLIGSLLNDPNPSVREKALNALN 79 (254)
T ss_pred cCHHHHHHHHHHHhcCCC-------hHHHHHHHH-HHHhhccCh-hHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHH
Confidence 467788999999986543 559999999 999887544 56778889999999999999999999999999999
Q ss_pred HHHhcccchhhhhhhhccchHHHHHHHHHc-c--CCchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhcccc
Q 015728 214 VIISSSHETKELCCKLGKDDRLLREIISLV-H--HNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRE 290 (401)
Q Consensus 214 ~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~--~~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~ 290 (401)
|+ +... ++...|- ..|+.+.... + -+.+.+..++++|.||+..++++..+.. .||.++++|. .++
T Consensus 80 Nl-s~~~---en~~~Ik---~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~---~G~ 147 (254)
T PF04826_consen 80 NL-SVND---ENQEQIK---MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLS---SGS 147 (254)
T ss_pred hc-CCCh---hhHHHHH---HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHH---cCC
Confidence 99 8876 7888773 3467777755 3 2567999999999999988888777754 7999999999 688
Q ss_pred chHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcC-ChhHHHHHHHHHHHHhcC
Q 015728 291 RSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVS-DHEGSENAINSLMMICCD 350 (401)
Q Consensus 291 ~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~-~~~~~~~a~~~L~~l~~~ 350 (401)
..++..++.+|.+|+.++.....++ ...+...|+. ++..+ +...-..++....||..+
T Consensus 148 ~~~k~~vLk~L~nLS~np~~~~~Ll-~~q~~~~~~~-Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 148 EKTKVQVLKVLVNLSENPDMTRELL-SAQVLSSFLS-LFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred hHHHHHHHHHHHHhccCHHHHHHHH-hccchhHHHH-HHccCCccHHHHHHHHHHHHHHHh
Confidence 8999999999999999999888886 6688999999 55543 556677788888888654
No 18
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.51 E-value=1.3e-13 Score=144.26 Aligned_cols=227 Identities=12% Similarity=0.097 Sum_probs=189.7
Q ss_pred ChHHHHHHHHHHHHHHhcCchhhhHHHh-cCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhc-CCchhhhhhcc
Q 015728 108 TLETKLQIVQKIHVVLRESPPASNCLIQ-LGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLL-VGETESLNLLN 185 (401)
Q Consensus 108 ~~~~~~~a~~~L~~l~~~~~~~r~~i~~-~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~-~~~~~~~~~v~ 185 (401)
....++.|.+.|.||..++..||..+.. -|++..+|..|.+..+ +++...+. +|+||+ ..|.+.++++.
T Consensus 364 ~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~pe--------eL~QV~As-vLRNLSWRAD~nmKkvLr 434 (2195)
T KOG2122|consen 364 CNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPE--------ELLQVYAS-VLRNLSWRADSNMKKVLR 434 (2195)
T ss_pred HHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChH--------HHHHHHHH-HHHhccccccccHHHHHH
Confidence 3567899999999999999999999986 7999999999988764 37777777 999998 44556788998
Q ss_pred cCCchHHHHHHh-hcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-C----CchhHHHHHHHHHH
Q 015728 186 EESKMESFIVLF-EHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-H----NSEASDAGVRAFSA 259 (401)
Q Consensus 186 ~~g~i~~Lv~~L-~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~----~~~~~~~a~~aL~~ 259 (401)
+.|.+..|+.+. +............+|+|| +.... +||..|+...|++.+||.+|. . ...+.+.|-.+|+|
T Consensus 435 E~GsVtaLa~~al~~~kEsTLKavLSALWNL-SAHct--eNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRN 511 (2195)
T KOG2122|consen 435 ETGSVTALAACALRNKKESTLKAVLSALWNL-SAHCT--ENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRN 511 (2195)
T ss_pred hhhhHHHHHHHHHHhcccchHHHHHHHHhhh-hhccc--ccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHH
Confidence 999999998764 444445556677899999 65543 999999998999999999992 2 13589999999999
Q ss_pred hcC----CCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHh-CCHhhHHHHHhCCCcHHHHHHHHHhcCCh
Q 015728 260 LCS----TETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLL-AIENSKDALINNPNGVYALVKMVFRVSDH 334 (401)
Q Consensus 260 Ls~----~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La-~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~ 334 (401)
.++ +++.|..+.+..++..|+++|. +.+-.++-+++++|+||+ ++++.+..++ +.|+|+.|-. |+++...
T Consensus 512 VSS~IAt~E~yRQILR~~NCLq~LLQ~LK---S~SLTiVSNaCGTLWNLSAR~p~DQq~Lw-D~gAv~mLrn-LIhSKhk 586 (2195)
T KOG2122|consen 512 VSSLIATCEDYRQILRRHNCLQTLLQHLK---SHSLTIVSNACGTLWNLSARSPEDQQMLW-DDGAVPMLRN-LIHSKHK 586 (2195)
T ss_pred HHhHhhccchHHHHHHHhhHHHHHHHHhh---hcceEEeecchhhhhhhhcCCHHHHHHHH-hcccHHHHHH-HHhhhhh
Confidence 874 6667888889999999999999 667788999999999998 5788888887 8999999999 6777777
Q ss_pred hHHHHHHHHHHHHhcCC
Q 015728 335 EGSENAINSLMMICCDS 351 (401)
Q Consensus 335 ~~~~~a~~~L~~l~~~~ 351 (401)
.+.+-++.+|.||-.+-
T Consensus 587 MIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 587 MIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hhhhhHHHHHHHHhcCC
Confidence 88888999999987664
No 19
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.50 E-value=2.8e-14 Score=102.30 Aligned_cols=63 Identities=49% Similarity=0.881 Sum_probs=58.7
Q ss_pred cccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCCcHHHHHHHHHH
Q 015728 12 LFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLRHLINQW 75 (401)
Q Consensus 12 ~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~n~~l~~~i~~~ 75 (401)
+|.||||+++|.+||.++|||+||+.||.+|+.+ ...||.|+..++..++.+|..+++.|++|
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~~~~~l~~~i~~~ 63 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLIPNLALKSAIQEW 63 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhceeCHHHHHHHHhC
Confidence 4789999999999999999999999999999985 67899999999888999999999999876
No 20
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.48 E-value=4.6e-12 Score=127.59 Aligned_cols=277 Identities=14% Similarity=0.134 Sum_probs=207.8
Q ss_pred HHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCch--hhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHh
Q 015728 95 LSTLKHSLQSHEATLETKLQIVQKIHVVLRESPP--ASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKL 172 (401)
Q Consensus 95 ~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~--~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~ 172 (401)
+..|+++|.. ...+.|+.|...|+||..++.. |+-.|.+.|+|+.|+.+|+...+ .++++.+.. +|+|
T Consensus 277 I~kLv~Ll~~--~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D-------~ev~e~iTg-~LWN 346 (717)
T KOG1048|consen 277 IPKLVALLDH--RNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQD-------DEVRELITG-ILWN 346 (717)
T ss_pred HHHHHHHhcC--CcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcc-------hHHHHHHHH-HHhc
Confidence 3345555542 3578999999999999988777 99999999999999999986432 469999999 9999
Q ss_pred hcCCchhhhhhcccCCchHHHHHHhh---c----C-------CHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHH
Q 015728 173 LLVGETESLNLLNEESKMESFIVLFE---H----G-------SCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLRE 238 (401)
Q Consensus 173 l~~~~~~~~~~v~~~g~i~~Lv~~L~---~----~-------~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~ 238 (401)
|+..| ..+..+. ..+++.|-+-+- + + ..++-.+++..|.|+ +... .+.++.+.+..|.|..
T Consensus 347 LSS~D-~lK~~ii-~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNl-Ss~~--~eaR~~mr~c~GLIda 421 (717)
T KOG1048|consen 347 LSSND-ALKMLII-TSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNL-SSAG--QEAREQMRECDGLIDA 421 (717)
T ss_pred ccchh-HHHHHHH-HHHHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccc-cchh--HHHHHHHhhccchHHH
Confidence 99764 4454543 345666654331 1 1 134557888999999 5533 2778888877788888
Q ss_pred HHHHcc-------CCchhHHHHHHHHHHhc-CCC----------------------------------------------
Q 015728 239 IISLVH-------HNSEASDAGVRAFSALC-STE---------------------------------------------- 264 (401)
Q Consensus 239 Lv~lL~-------~~~~~~~~a~~aL~~Ls-~~~---------------------------------------------- 264 (401)
|+..++ .+...+++++..|+||+ .-+
T Consensus 422 L~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~ 501 (717)
T KOG1048|consen 422 LLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPI 501 (717)
T ss_pred HHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCC
Confidence 876661 13346666666666665 111
Q ss_pred -------------------------------------------------c-----hhHHH-HhcCcHHHHHHHHHhhccc
Q 015728 265 -------------------------------------------------T-----NRKTL-VQEGAINGLIAYISNALTR 289 (401)
Q Consensus 265 -------------------------------------------------~-----n~~~i-v~~G~v~~Lv~lL~~~~~~ 289 (401)
- .+..+ .+..+.|+|+++|. .+
T Consensus 502 pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~---~~ 578 (717)
T KOG1048|consen 502 PERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLR---ND 578 (717)
T ss_pred cccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHh---cC
Confidence 0 12223 45667899999999 68
Q ss_pred cchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCC------hhHHHHHHHHHHHHhcCCHHHHHHHHHcCc
Q 015728 290 ERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSD------HEGSENAINSLMMICCDSLQAREEAICAGV 363 (401)
Q Consensus 290 ~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~------~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~ 363 (401)
+..++..++.+|.||+.+..++..|. .++++.||+ .+..+. ......+..+|+++...+....+.+.+.++
T Consensus 579 ~~~vv~s~a~~LrNls~d~rnk~lig--k~a~~~lv~-~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g 655 (717)
T KOG1048|consen 579 DSDVVRSAAGALRNLSRDIRNKELIG--KYAIPDLVR-CLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKG 655 (717)
T ss_pred CchHHHHHHHHHhhhccCchhhhhhh--cchHHHHHH-hCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccC
Confidence 88999999999999999999999995 589999999 555432 356677888999999777778889999999
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728 364 LTQLLLLLQSQCSNRTKTKARMLLKLLRS 392 (401)
Q Consensus 364 v~~L~~ll~~~~~~~~~~~A~~~L~~l~~ 392 (401)
++.|+.+..+..+++.-+.|..+|..+-.
T Consensus 656 ~~kL~~I~~s~~S~k~~kaAs~vL~~lW~ 684 (717)
T KOG1048|consen 656 IPKLRLISKSQHSPKEFKAASSVLDVLWQ 684 (717)
T ss_pred hHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 99999999887788999999998888766
No 21
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.41 E-value=8.1e-11 Score=110.77 Aligned_cols=270 Identities=14% Similarity=0.144 Sum_probs=205.5
Q ss_pred HHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhcc-CCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCCc
Q 015728 111 TKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFG-KAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESK 189 (401)
Q Consensus 111 ~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s-~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~ 189 (401)
...+....+-.-..+++.-+-.++++|.+..++.+++. ++.. ...+....-..+.. +...|..+|+....+-..+..
T Consensus 239 d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t-~k~d~~~l~k~~~e-l~vllltGDeSMq~L~~~p~~ 316 (604)
T KOG4500|consen 239 DIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFT-KKTDMLNLFKRIAE-LDVLLLTGDESMQKLHADPQF 316 (604)
T ss_pred chhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhccccc-chHHHHHHHHhhhh-HhhhhhcCchHHHHHhcCcHH
Confidence 34455556666666777789999999999999999976 2221 01122223344444 555555566555545533337
Q ss_pred hHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-c-----CCchhHHHHHHHHHHhcCC
Q 015728 190 MESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-H-----HNSEASDAGVRAFSALCST 263 (401)
Q Consensus 190 i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~-----~~~~~~~~a~~aL~~Ls~~ 263 (401)
+..+++.++|.+...+..++.+|.|+ +..+ +++-.+++. |++..|+.+| + ++.+.+.+++.||+||...
T Consensus 317 l~~~~sw~~S~d~~l~t~g~LaigNf-aR~D---~~ci~~v~~-~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IP 391 (604)
T KOG4500|consen 317 LDFLESWFRSDDSNLITMGSLAIGNF-ARRD---DICIQLVQK-DFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIP 391 (604)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhh-hccc---hHHHHHHHH-HHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcccc
Confidence 88999999999999999999999999 7665 889999884 9999999999 2 3567999999999999999
Q ss_pred CchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHh-hHHHHHhCCCcHHHHHHHHHhcCCh-hHHHHHH
Q 015728 264 ETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIEN-SKDALINNPNGVYALVKMVFRVSDH-EGSENAI 341 (401)
Q Consensus 264 ~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~-~~~~~~~~~g~i~~Lv~~l~~~~~~-~~~~~a~ 341 (401)
..||..++.+|+++.++..|. ...+.++..-+.+|+.+....+ ...++..+..-+..||++ .++++. .+.-...
T Consensus 392 v~nka~~~~aGvteaIL~~lk---~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~W-sks~D~aGv~gESn 467 (604)
T KOG4500|consen 392 VSNKAHFAPAGVTEAILLQLK---LASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDW-SKSPDFAGVAGESN 467 (604)
T ss_pred CCchhhccccchHHHHHHHHH---hcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHh-hhCCccchhhhhhh
Confidence 999999999999999999999 6788899999999999987766 556777777888899986 455443 3566678
Q ss_pred HHHHHHhcCC--HHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728 342 NSLMMICCDS--LQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS 392 (401)
Q Consensus 342 ~~L~~l~~~~--~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~ 392 (401)
+.|..+.+|+ .++...+.+.|+|..++.++... .-..+..|.-+|-.+..
T Consensus 468 Rll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~-hi~mqnEalVal~~~~~ 519 (604)
T KOG4500|consen 468 RLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTKN-HINMQNEALVALLSTES 519 (604)
T ss_pred HHHHHHHHhhHhhhhHhhccccccHHHHHHHHHHh-hHHHhHHHHHHHHHHHH
Confidence 8888888873 46777888999999999998776 55566666666655544
No 22
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.36 E-value=2.3e-11 Score=98.46 Aligned_cols=117 Identities=21% Similarity=0.302 Sum_probs=106.0
Q ss_pred HHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCC-HhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 015728 269 TLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAI-ENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMI 347 (401)
Q Consensus 269 ~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~-~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l 347 (401)
.+++.|+++.|+++|. +++..++..++.+|.+++.. ++.+..+. +.|+++.+++ +++++++..+..++.+|.+|
T Consensus 2 ~~~~~~~i~~l~~~l~---~~~~~~~~~a~~~l~~l~~~~~~~~~~~~-~~~~i~~l~~-~l~~~~~~v~~~a~~~L~~l 76 (120)
T cd00020 2 AVIQAGGLPALVSLLS---SSDENVQREAAWALSNLSAGNNDNIQAVV-EAGGLPALVQ-LLKSEDEEVVKAALWALRNL 76 (120)
T ss_pred hHHHcCChHHHHHHHH---cCCHHHHHHHHHHHHHHhcCCHHHHHHHH-HCCChHHHHH-HHhCCCHHHHHHHHHHHHHH
Confidence 4678999999999999 67789999999999999987 77888886 6799999999 57778889999999999999
Q ss_pred hcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 015728 348 CCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLR 391 (401)
Q Consensus 348 ~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~ 391 (401)
+.+.+..+..+.+.|+++.|+.+++.+ +..+++.|.++|..|.
T Consensus 77 ~~~~~~~~~~~~~~g~l~~l~~~l~~~-~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 77 AAGPEDNKLIVLEAGGVPKLVNLLDSS-NEDIQKNATGALSNLA 119 (120)
T ss_pred ccCcHHHHHHHHHCCChHHHHHHHhcC-CHHHHHHHHHHHHHhh
Confidence 998877888889999999999999887 8999999999999875
No 23
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.34 E-value=6.3e-13 Score=86.06 Aligned_cols=39 Identities=44% Similarity=0.902 Sum_probs=31.2
Q ss_pred ccccccccCCceEcCccccccHHhHHHHHHcCC---CCCCCC
Q 015728 15 CPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGN---LTCPVT 53 (401)
Q Consensus 15 C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~---~~CP~c 53 (401)
||||+++|++||+++|||+||..||.+|+.... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999999999999999999999998632 579987
No 24
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.32 E-value=1.4e-09 Score=109.95 Aligned_cols=278 Identities=17% Similarity=0.179 Sum_probs=201.5
Q ss_pred hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHh
Q 015728 93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKL 172 (401)
Q Consensus 93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~ 172 (401)
+....+...|.. .++..|.-+++.|+++..+++...+.+.+.+.++.++.+|.+++. .+.+.|+. +|..
T Consensus 77 ~~~~~L~~gL~h--~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~--------~Va~~A~~-~L~~ 145 (503)
T PF10508_consen 77 QYQPFLQRGLTH--PSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDL--------SVAKAAIK-ALKK 145 (503)
T ss_pred HHHHHHHHHhcC--CCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcH--------HHHHHHHH-HHHH
Confidence 444445555553 467899999999999999888777788889999999999988874 48999999 9999
Q ss_pred hcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHccCC-chhHH
Q 015728 173 LLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHHN-SEASD 251 (401)
Q Consensus 173 l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~-~~~~~ 251 (401)
++.+......++ ..+.+..|..++..++..+|.++..++.++ +..+ ++....+..+ |+++.++..|+++ .=++.
T Consensus 146 l~~~~~~~~~l~-~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i-~~~S--~~~~~~~~~s-gll~~ll~eL~~dDiLvql 220 (503)
T PF10508_consen 146 LASHPEGLEQLF-DSNLLSKLKSLMSQSSDIVRCRVYELLVEI-ASHS--PEAAEAVVNS-GLLDLLLKELDSDDILVQL 220 (503)
T ss_pred HhCCchhHHHHh-CcchHHHHHHHHhccCHHHHHHHHHHHHHH-HhcC--HHHHHHHHhc-cHHHHHHHHhcCccHHHHH
Confidence 987666554444 777799999999888888899999999999 6554 2667777665 9999999999654 44899
Q ss_pred HHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccc---h-HHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHH
Q 015728 252 AGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRER---S-LAAIAMARIEQLLAIENSKDALINNPNGVYALVKM 327 (401)
Q Consensus 252 ~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~---~-~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~ 327 (401)
+++..|..|+..+.+...+.+.|+++.|..++.+. ..++ . ..-..+....+++..... ......+..+..|.+
T Consensus 221 nalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~-~~dp~~~~~~l~g~~~f~g~la~~~~~-~v~~~~p~~~~~l~~- 297 (503)
T PF10508_consen 221 NALELLSELAETPHGLQYLEQQGIFDKLSNLLQDS-EEDPRLSSLLLPGRMKFFGNLARVSPQ-EVLELYPAFLERLFS- 297 (503)
T ss_pred HHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhcc-ccCCcccchhhhhHHHHHHHHHhcChH-HHHHHHHHHHHHHHH-
Confidence 99999999999999999999999999999999752 1222 1 112233455556653111 111123344455555
Q ss_pred HHhcCChhHHHHHHHHHHHHhcCCHHHHHHH-HH-cCcHHHHHHHh----hcCCCHHHHHHHHHHHHHHH
Q 015728 328 VFRVSDHEGSENAINSLMMICCDSLQAREEA-IC-AGVLTQLLLLL----QSQCSNRTKTKARMLLKLLR 391 (401)
Q Consensus 328 l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~-~g~v~~L~~ll----~~~~~~~~~~~A~~~L~~l~ 391 (401)
+..+.++..+..|+.+|..|++.. +.+..+ .. .+.+...+.-. ..+ ....|-++...|..+-
T Consensus 298 ~~~s~d~~~~~~A~dtlg~igst~-~G~~~L~~~~~~~~~~~l~~~~~~~~~~-~~~lk~r~l~al~~il 365 (503)
T PF10508_consen 298 MLESQDPTIREVAFDTLGQIGSTV-EGKQLLLQKQGPAMKHVLKAIGDAIKSG-STELKLRALHALASIL 365 (503)
T ss_pred HhCCCChhHHHHHHHHHHHHhCCH-HHHHHHHhhcchHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHH
Confidence 456678788999999999999764 555455 33 33545444433 334 5677888888877773
No 25
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.30 E-value=1e-09 Score=111.05 Aligned_cols=276 Identities=15% Similarity=0.113 Sum_probs=203.2
Q ss_pred HHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCc
Q 015728 98 LKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGE 177 (401)
Q Consensus 98 l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~ 177 (401)
+-.+|... +.+.-..+...|..+..... .... ..+..+.|...|.++++ .++..++. .+.++..++
T Consensus 43 lf~~L~~~--~~e~v~~~~~iL~~~l~~~~-~~~l--~~~~~~~L~~gL~h~~~--------~Vr~l~l~-~l~~~~~~~ 108 (503)
T PF10508_consen 43 LFDCLNTS--NREQVELICDILKRLLSALS-PDSL--LPQYQPFLQRGLTHPSP--------KVRRLALK-QLGRIARHS 108 (503)
T ss_pred HHHHHhhc--ChHHHHHHHHHHHHHHhccC-HHHH--HHHHHHHHHHHhcCCCH--------HHHHHHHH-HHHHHhcCC
Confidence 33445433 45556667777888877553 2222 45678999999988774 59999999 788777677
Q ss_pred hhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHccC-CchhHHHHHHH
Q 015728 178 TESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHH-NSEASDAGVRA 256 (401)
Q Consensus 178 ~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~a~~a 256 (401)
+.....+.+.+.++.++.+|.+++.++...|+.+|.+| +... .....+... +.+..|..++.. +...+..+..+
T Consensus 109 ~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l-~~~~---~~~~~l~~~-~~~~~L~~l~~~~~~~vR~Rv~el 183 (503)
T PF10508_consen 109 EGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKL-ASHP---EGLEQLFDS-NLLSKLKSLMSQSSDIVRCRVYEL 183 (503)
T ss_pred HHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHH-hCCc---hhHHHHhCc-chHHHHHHHHhccCHHHHHHHHHH
Confidence 66677777899999999999999999999999999999 7655 444556554 558999999954 66788899999
Q ss_pred HHHhcC-CCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcC-Ch
Q 015728 257 FSALCS-TETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVS-DH 334 (401)
Q Consensus 257 L~~Ls~-~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~-~~ 334 (401)
+.+++. .++....+++.|.++.++..|. ++|.-++.+++.+|..|+..+++...+. +.|+++.|+.++.+.. ++
T Consensus 184 ~v~i~~~S~~~~~~~~~sgll~~ll~eL~---~dDiLvqlnalell~~La~~~~g~~yL~-~~gi~~~L~~~l~~~~~dp 259 (503)
T PF10508_consen 184 LVEIASHSPEAAEAVVNSGLLDLLLKELD---SDDILVQLNALELLSELAETPHGLQYLE-QQGIFDKLSNLLQDSEEDP 259 (503)
T ss_pred HHHHHhcCHHHHHHHHhccHHHHHHHHhc---CccHHHHHHHHHHHHHHHcChhHHHHHH-hCCHHHHHHHHHhccccCC
Confidence 999985 5556777778999999999999 6788899999999999999999988886 8899999999654432 22
Q ss_pred ---h-HHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHHhhc
Q 015728 335 ---E-GSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAEELK 399 (401)
Q Consensus 335 ---~-~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e~~~ 399 (401)
. .--..+....+++..++..... .-...+..|..+++++ +...+..|...+..++. +.|..+
T Consensus 260 ~~~~~~l~g~~~f~g~la~~~~~~v~~-~~p~~~~~l~~~~~s~-d~~~~~~A~dtlg~igs-t~~G~~ 325 (503)
T PF10508_consen 260 RLSSLLLPGRMKFFGNLARVSPQEVLE-LYPAFLERLFSMLESQ-DPTIREVAFDTLGQIGS-TVEGKQ 325 (503)
T ss_pred cccchhhhhHHHHHHHHHhcChHHHHH-HHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHhC-CHHHHH
Confidence 0 1122335556666643322111 1123344555666666 88899999999999986 776643
No 26
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.25 E-value=8.6e-11 Score=95.02 Aligned_cols=113 Identities=19% Similarity=0.307 Sum_probs=98.2
Q ss_pred hHHHHHHHHHc-cCCchhHHHHHHHHHHhcCC-CchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhh
Q 015728 233 DRLLREIISLV-HHNSEASDAGVRAFSALCST-ETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENS 310 (401)
Q Consensus 233 ~g~i~~Lv~lL-~~~~~~~~~a~~aL~~Ls~~-~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~ 310 (401)
.|+++.|+.+| +++...+..++++|.+++.. ++++..+++.|++|.++++|. +++..++..++++|.+|+.+...
T Consensus 6 ~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~---~~~~~v~~~a~~~L~~l~~~~~~ 82 (120)
T cd00020 6 AGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK---SEDEEVVKAALWALRNLAAGPED 82 (120)
T ss_pred cCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHh---CCCHHHHHHHHHHHHHHccCcHH
Confidence 37899999999 45677999999999999976 788999999999999999999 67889999999999999988755
Q ss_pred HHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhc
Q 015728 311 KDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICC 349 (401)
Q Consensus 311 ~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~ 349 (401)
......+.|+++.|++ ++...+...++.+..+|.+|+.
T Consensus 83 ~~~~~~~~g~l~~l~~-~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 83 NKLIVLEAGGVPKLVN-LLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHCCChHHHHH-HHhcCCHHHHHHHHHHHHHhhC
Confidence 4444458899999999 5667777999999999999873
No 27
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.23 E-value=9.6e-12 Score=119.07 Aligned_cols=71 Identities=18% Similarity=0.403 Sum_probs=63.8
Q ss_pred CCCCcccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCCcHHHHHHHHHHHHhC
Q 015728 8 TIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLRHLINQWLQMG 79 (401)
Q Consensus 8 ~~~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~n~~l~~~i~~~~~~~ 79 (401)
.+...+.|+||.++|.+|++++|||+||..|+..|+.. ...||.|+..+....+..|..+.++|+.|+..+
T Consensus 22 ~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~~R 92 (397)
T TIGR00599 22 PLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQESKLRSNWLVSEIVESFKNLR 92 (397)
T ss_pred ccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC-CCCCCCCCCccccccCccchHHHHHHHHHHHhh
Confidence 35678999999999999999999999999999999984 457999999988778899999999999998654
No 28
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.18 E-value=2e-09 Score=102.50 Aligned_cols=254 Identities=15% Similarity=0.167 Sum_probs=166.1
Q ss_pred HHHHHHHHhcCchhhhHHHhc---CChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhccc------
Q 015728 116 VQKIHVVLRESPPASNCLIQL---GFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNE------ 186 (401)
Q Consensus 116 ~~~L~~l~~~~~~~r~~i~~~---G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~------ 186 (401)
+..++.+-+..+..|..+.+. +.+..++.+|+.-.. +.++..+++. ++..|..++....+.+..
T Consensus 31 ~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~~~~------~~d~v~yvL~-li~dll~~~~~~~~~~~~~~~~~~ 103 (312)
T PF03224_consen 31 LSLIKKLDKQSKEERRELLEEDGDQYASLFLNLLNKLSS------NDDTVQYVLT-LIDDLLSDDPSRVELFLELAKQDD 103 (312)
T ss_dssp HHHHHHHHHHHH-------------------HHHHHH---------HHHHHHHHH-HHHHHHH-SSSSHHHHHHHHH-TT
T ss_pred HHHHHHHHCCCHHHHHHHHHhchhhHHHHHHHHHHHccC------cHHHHHHHHH-HHHHHHhcCHHHHHHHHHhccccc
Confidence 344444444444445445552 457788888866511 2668899999 888777666555444422
Q ss_pred CCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHccC-----CchhHHHHHHHHHHhc
Q 015728 187 ESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHH-----NSEASDAGVRAFSALC 261 (401)
Q Consensus 187 ~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~-----~~~~~~~a~~aL~~Ls 261 (401)
.....+++.++.+++..++..|+..|..|.+..+ ....... .+.++.++..|+. +.+.+..++.+|.+|.
T Consensus 104 ~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~---~~~~~~~--~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL 178 (312)
T PF03224_consen 104 SDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGP---KRSEKLV--KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLL 178 (312)
T ss_dssp H--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTT---T--HHHH--HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHH
T ss_pred chhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCC---ccccchH--HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHh
Confidence 2258889999999999999999999999944443 1111111 3678888888832 2347799999999999
Q ss_pred CCCchhHHHHhcCcHHHHHHHH------HhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChh
Q 015728 262 STETNRKTLVQEGAINGLIAYI------SNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHE 335 (401)
Q Consensus 262 ~~~~n~~~iv~~G~v~~Lv~lL------~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~ 335 (401)
..++.|..+.+.|+|+.|+.+| .+ ..+.+++=.++-+++.|+-.++....+. +.+.|+.|++.+.....++
T Consensus 179 ~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~--~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~-~~~~i~~L~~i~~~~~KEK 255 (312)
T PF03224_consen 179 RSKEYRQVFWKSNGVSPLFDILRKQATNSN--SSGIQLQYQALLCLWLLSFEPEIAEELN-KKYLIPLLADILKDSIKEK 255 (312)
T ss_dssp TSHHHHHHHHTHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHTTSHHHHHHHH-TTSHHHHHHHHHHH--SHH
T ss_pred CcchhHHHHHhcCcHHHHHHHHHhhcccCC--CCchhHHHHHHHHHHHHhcCHHHHHHHh-ccchHHHHHHHHHhcccch
Confidence 9999999999999999999999 32 4556788889999999999999999997 6679999999655556788
Q ss_pred HHHHHHHHHHHHhcCCHH-HHHHHHHcCcHHHHHHHhhcC-CCHHHHHHHH
Q 015728 336 GSENAINSLMMICCDSLQ-AREEAICAGVLTQLLLLLQSQ-CSNRTKTKAR 384 (401)
Q Consensus 336 ~~~~a~~~L~~l~~~~~~-~~~~~~~~g~v~~L~~ll~~~-~~~~~~~~A~ 384 (401)
+.+.++++|.|+...+.. ....|+..|+++.+-.|.... .++...+.-.
T Consensus 256 vvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl~ 306 (312)
T PF03224_consen 256 VVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSDEDLTEDLE 306 (312)
T ss_dssp HHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHHHHH
Confidence 999999999999987653 777899988888877665433 2445544433
No 29
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.18 E-value=1.4e-11 Score=105.25 Aligned_cols=57 Identities=32% Similarity=0.550 Sum_probs=48.9
Q ss_pred CCCcccccccccccCCceEcCccccccHHhHHHHHHc---------------CCCCCCCCcccCCCCCCCCc
Q 015728 9 IPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAA---------------GNLTCPVTMQTLHDPSIVPN 65 (401)
Q Consensus 9 ~~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~---------------~~~~CP~c~~~~~~~~~~~n 65 (401)
..+++.|+||.+.+++|+.++|||.||+.||.+|+.. +...||.|+..+....+.+.
T Consensus 15 ~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPi 86 (193)
T PLN03208 15 SGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPI 86 (193)
T ss_pred CCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEe
Confidence 4578999999999999999999999999999999752 24679999999987666554
No 30
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=99.18 E-value=7.4e-12 Score=113.43 Aligned_cols=69 Identities=22% Similarity=0.395 Sum_probs=62.5
Q ss_pred CCcccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCCcHHHHHHHHHHHHhC
Q 015728 10 PHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLRHLINQWLQMG 79 (401)
Q Consensus 10 ~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~n~~l~~~i~~~~~~~ 79 (401)
.+.++|.||+++|+-|+.+||+|+||..||..++. ....||.|...+....++.|+.+..+|+.|.-.+
T Consensus 21 D~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~-~~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~~~R 89 (442)
T KOG0287|consen 21 DDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLS-YKPQCPTCCVTVTESDLRNNRILDEIVKSLNFAR 89 (442)
T ss_pred HHHHHHhHHHHHhcCceeccccchHHHHHHHHHhc-cCCCCCceecccchhhhhhhhHHHHHHHHHHHHH
Confidence 35689999999999999999999999999999998 5677999999999989999999999999986543
No 31
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=3.1e-10 Score=108.17 Aligned_cols=196 Identities=12% Similarity=0.126 Sum_probs=156.5
Q ss_pred HHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHH
Q 015728 161 FVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREII 240 (401)
Q Consensus 161 ~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv 240 (401)
+...|+. +|.||+.+- ..-.-+.....+..||..|+..+.+........|..| |..+ +||..++.. |+++.|+
T Consensus 279 LLrva~y-lLlNlAed~-~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKL-SIf~---eNK~~M~~~-~iveKL~ 351 (791)
T KOG1222|consen 279 LLRVAVY-LLLNLAEDI-SVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKL-SIFD---ENKIVMEQN-GIVEKLL 351 (791)
T ss_pred HHHHHHH-HHHHHhhhh-hHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHh-hhhc---cchHHHHhc-cHHHHHH
Confidence 3344556 777777432 2222244567889999999999999999999999999 9988 899999885 9999999
Q ss_pred HHc-cCCchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCC
Q 015728 241 SLV-HHNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPN 319 (401)
Q Consensus 241 ~lL-~~~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g 319 (401)
+++ ..+++.++..+..|+||+.+..+|.+||..|.+|.|+.+|.+ .. -...|+..|..++-++..+..+. ...
T Consensus 352 klfp~~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~---d~--~~~iA~~~lYh~S~dD~~K~Mfa-yTd 425 (791)
T KOG1222|consen 352 KLFPIQHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDS---DT--KHGIALNMLYHLSCDDDAKAMFA-YTD 425 (791)
T ss_pred HhcCCCCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCC---cc--cchhhhhhhhhhccCcHHHHHHH-HHH
Confidence 999 467789999999999999999999999999999999999983 22 34569999999999999988885 889
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHH
Q 015728 320 GVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLL 370 (401)
Q Consensus 320 ~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~l 370 (401)
+|+.+.+.++...+.++...-+..-.|||.+.++ .+.+.+..++..|+..
T Consensus 426 ci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRN-aQlvceGqgL~~LM~r 475 (791)
T KOG1222|consen 426 CIKLLMKDVLSGTGSEVDLALIALCINLCLNKRN-AQLVCEGQGLDLLMER 475 (791)
T ss_pred HHHHHHHHHHhcCCceecHHHHHHHHHHHhcccc-ceEEecCcchHHHHHH
Confidence 9999999888777767776666666888877543 3456666666655543
No 32
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=99.11 E-value=2e-11 Score=84.11 Aligned_cols=60 Identities=28% Similarity=0.510 Sum_probs=34.5
Q ss_pred CCcccccccccccCCceEc-CccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCCcHHHHHHH
Q 015728 10 PHLFRCPISLDLFTDPVTL-CTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLRHLI 72 (401)
Q Consensus 10 ~~~~~C~iC~~~~~~Pv~~-~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~n~~l~~~i 72 (401)
++.++|++|.++|++||.+ .|.|.||+.|+.+.+. ..||+|..+...++++.|+.+..+|
T Consensus 5 e~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~---~~CPvC~~Paw~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 5 EELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG---SECPVCHTPAWIQDIQINRQLDSMI 65 (65)
T ss_dssp HHTTS-SSS-S--SS-B---SSS--B-TTTGGGGTT---TB-SSS--B-S-SS----HHHHHHH
T ss_pred HHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC---CCCCCcCChHHHHHHHhhhhhhccC
Confidence 4568999999999999975 7999999999977554 2499999999999999999998876
No 33
>PRK09687 putative lyase; Provisional
Probab=99.05 E-value=1.8e-08 Score=94.02 Aligned_cols=223 Identities=12% Similarity=0.021 Sum_probs=155.7
Q ss_pred hHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHh-ccCCcccchhhhHHHHHHHHHHHHHh
Q 015728 94 SLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQL-FGKAESKFSQVYVQFVEESLSCVQKL 172 (401)
Q Consensus 94 ~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL-~s~~~~~~~~~~~~~~~~a~~~~L~~ 172 (401)
....+..++. +.++..|..|+..|..+-..... ..-.++.|..++ ++++ +.++..|+. +|..
T Consensus 55 ~~~~l~~ll~--~~d~~vR~~A~~aLg~lg~~~~~------~~~a~~~L~~l~~~D~d--------~~VR~~A~~-aLG~ 117 (280)
T PRK09687 55 VFRLAIELCS--SKNPIERDIGADILSQLGMAKRC------QDNVFNILNNLALEDKS--------ACVRASAIN-ATGH 117 (280)
T ss_pred HHHHHHHHHh--CCCHHHHHHHHHHHHhcCCCccc------hHHHHHHHHHHHhcCCC--------HHHHHHHHH-HHhc
Confidence 4444444443 23567778888877776532211 122467787774 4444 458888998 8887
Q ss_pred hcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cCCchhHH
Q 015728 173 LLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-HHNSEASD 251 (401)
Q Consensus 173 l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~ 251 (401)
+....... ....+..+...+.+.+..+|..++.+|..+ .. ..+++.|+.+| +.++.++.
T Consensus 118 ~~~~~~~~-----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~-~~--------------~~ai~~L~~~L~d~~~~VR~ 177 (280)
T PRK09687 118 RCKKNPLY-----SPKIVEQSQITAFDKSTNVRFAVAFALSVI-ND--------------EAAIPLLINLLKDPNGDVRN 177 (280)
T ss_pred cccccccc-----chHHHHHHHHHhhCCCHHHHHHHHHHHhcc-CC--------------HHHHHHHHHHhcCCCHHHHH
Confidence 65322111 223466677777788889999999998777 31 24689999999 45667999
Q ss_pred HHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhc
Q 015728 252 AGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRV 331 (401)
Q Consensus 252 ~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~ 331 (401)
.|+.+|..+... ...+++.|+.+|. +.+..++..|+.+|..+ .+..+|+.|++ .+++
T Consensus 178 ~A~~aLg~~~~~--------~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~-----------~~~~av~~Li~-~L~~ 234 (280)
T PRK09687 178 WAAFALNSNKYD--------NPDIREAFVAMLQ---DKNEEIRIEAIIGLALR-----------KDKRVLSVLIK-ELKK 234 (280)
T ss_pred HHHHHHhcCCCC--------CHHHHHHHHHHhc---CCChHHHHHHHHHHHcc-----------CChhHHHHHHH-HHcC
Confidence 999999988321 1257888999998 78889999999988765 35678999999 4665
Q ss_pred CChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 015728 332 SDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKL 389 (401)
Q Consensus 332 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~ 389 (401)
++ ....++.+|..+-. + -+++.|..+++...++.++.+|.+.|+.
T Consensus 235 ~~--~~~~a~~ALg~ig~--~---------~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 235 GT--VGDLIIEAAGELGD--K---------TLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred Cc--hHHHHHHHHHhcCC--H---------hHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 54 55667777777632 2 3678999999755599999999988864
No 34
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.00 E-value=2.5e-10 Score=72.98 Aligned_cols=38 Identities=45% Similarity=0.859 Sum_probs=32.9
Q ss_pred ccccccccCCce-EcCccccccHHhHHHHHHcCCCCCCCC
Q 015728 15 CPISLDLFTDPV-TLCTGQTYDRSSIEKWLAAGNLTCPVT 53 (401)
Q Consensus 15 C~iC~~~~~~Pv-~~~Cgh~fc~~Ci~~~~~~~~~~CP~c 53 (401)
|+||.+.+.+|+ .++|||+||..|+.+|+.. ...||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 899999999995 6899999999999999996 6789987
No 35
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=1.9e-10 Score=100.07 Aligned_cols=55 Identities=31% Similarity=0.616 Sum_probs=48.5
Q ss_pred CcccccccccccCCceEcCccccccHHhHHHHHHc--CCCCCCCCcccCCCCCCCCc
Q 015728 11 HLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAA--GNLTCPVTMQTLHDPSIVPN 65 (401)
Q Consensus 11 ~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~--~~~~CP~c~~~~~~~~~~~n 65 (401)
..|.|.||++.-+|||.+.|||-||+.||++|+.. ....||+|+..++...+.|-
T Consensus 46 ~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPl 102 (230)
T KOG0823|consen 46 GFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPL 102 (230)
T ss_pred CceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEee
Confidence 47999999999999999999999999999999985 35679999998887766654
No 36
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=98.99 E-value=1.6e-07 Score=88.91 Aligned_cols=287 Identities=12% Similarity=0.107 Sum_probs=199.7
Q ss_pred hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHh
Q 015728 93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKL 172 (401)
Q Consensus 93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~ 172 (401)
+.+..|.++.++. +.+.-.+.-+.|.+.|..+.++|..+.+.||-..++..|+.-... .+.-+.+....+.+ +|.|
T Consensus 87 ~~le~Lrq~psS~--d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~-d~~ane~~~~v~~g-~l~N 162 (604)
T KOG4500|consen 87 EALELLRQTPSSP--DTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSK-DNPANEEYSAVAFG-VLHN 162 (604)
T ss_pred HHHHHHHhCCCCC--cccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhcccccc-CCccHHHHHHHHHH-HHHH
Confidence 3444455544433 456777788889999999999999999999988888888653321 00113445555666 8888
Q ss_pred hcCCchhhhhhcccCCchHHHHHHhhc--CCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc--CCch
Q 015728 173 LLVGETESLNLLNEESKMESFIVLFEH--GSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH--HNSE 248 (401)
Q Consensus 173 l~~~~~~~~~~v~~~g~i~~Lv~~L~~--~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~--~~~~ 248 (401)
-..+.++.+.-+.+.|.++.|.-.+.= .+.+.-+......+++.+... +...+...+ ..+...|+++|. -.+.
T Consensus 163 y~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~--e~~~~~~~d-~sl~~~l~~ll~~~v~~d 239 (604)
T KOG4500|consen 163 YILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVC--EMLYPFCKD-CSLVFMLLQLLPSMVRED 239 (604)
T ss_pred hhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHH--Hhhhhhhcc-chHHHHHHHHHHHhhccc
Confidence 888887777677799999988877643 345555555555555533332 122333333 367788888883 3455
Q ss_pred hHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhcccc-------chHHHHHHHHHHHHhCCHhhHHHHHhCCCcH
Q 015728 249 ASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRE-------RSLAAIAMARIEQLLAIENSKDALINNPNGV 321 (401)
Q Consensus 249 ~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~-------~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i 321 (401)
..+-....|...+.++..+-.+++.|.+..++.++++ -.+ ...-..++.....|..+++....+..++...
T Consensus 240 ~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~--~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l 317 (604)
T KOG4500|consen 240 IDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRN--MKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFL 317 (604)
T ss_pred hhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHh--cccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHH
Confidence 7777888999999999999999999999999999974 122 1233445555555666777777776555577
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhc----CCCHHHHHHHHHHHHHH
Q 015728 322 YALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQS----QCSNRTKTKARMLLKLL 390 (401)
Q Consensus 322 ~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~----~~~~~~~~~A~~~L~~l 390 (401)
..++.+ +++.+....-.++-++.|++..+..+. .+++.|.+..|+.++-. +++-+.+..+..+||.|
T Consensus 318 ~~~~sw-~~S~d~~l~t~g~LaigNfaR~D~~ci-~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl 388 (604)
T KOG4500|consen 318 DFLESW-FRSDDSNLITMGSLAIGNFARRDDICI-QLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNL 388 (604)
T ss_pred HHHHHH-hcCCchhHHHHHHHHHHhhhccchHHH-HHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhc
Confidence 778884 677676788888999999999977665 89999999999997733 22335566667777765
No 37
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=1.6e-07 Score=89.95 Aligned_cols=281 Identities=12% Similarity=0.105 Sum_probs=182.8
Q ss_pred hHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhh
Q 015728 94 SLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLL 173 (401)
Q Consensus 94 ~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l 173 (401)
.++.|++.|...++ +.--....-|..|+-.. +|+..+.+.|.|..|+++....+ ++++...+. ++.|+
T Consensus 305 iV~mLVKaLdr~n~--~Ll~lv~~FLkKLSIf~-eNK~~M~~~~iveKL~klfp~~h--------~dL~~~tl~-LlfNl 372 (791)
T KOG1222|consen 305 IVAMLVKALDRSNS--SLLTLVIKFLKKLSIFD-ENKIVMEQNGIVEKLLKLFPIQH--------PDLRKATLM-LLFNL 372 (791)
T ss_pred HHHHHHHHHcccch--HHHHHHHHHHHHhhhhc-cchHHHHhccHHHHHHHhcCCCC--------HHHHHHHHH-Hhhhc
Confidence 34555566644432 33344455555665554 59999999999999999998776 558888888 99999
Q ss_pred cCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cC-CchhHH
Q 015728 174 LVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-HH-NSEASD 251 (401)
Q Consensus 174 ~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~-~~~~~~ 251 (401)
+.+.... .-++..|.+|.+..+|.+.+. ...|...|..+ |.++ ..|..+... ..|+.+.+.+ .+ +.++-.
T Consensus 373 SFD~glr-~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~-S~dD---~~K~MfayT-dci~~lmk~v~~~~~~~vdl 444 (791)
T KOG1222|consen 373 SFDSGLR-PKMVNGGLLPHLASLLDSDTK--HGIALNMLYHL-SCDD---DAKAMFAYT-DCIKLLMKDVLSGTGSEVDL 444 (791)
T ss_pred ccccccc-HHHhhccchHHHHHHhCCccc--chhhhhhhhhh-ccCc---HHHHHHHHH-HHHHHHHHHHHhcCCceecH
Confidence 9876544 445588999999999976543 34577789999 8887 778887664 7889998876 43 333444
Q ss_pred HHHHHHHHhcCCCchhHHHHhcCcHHHHH-------------------------------------HHHHhhccccchHH
Q 015728 252 AGVRAFSALCSTETNRKTLVQEGAINGLI-------------------------------------AYISNALTRERSLA 294 (401)
Q Consensus 252 ~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv-------------------------------------~lL~~~~~~~~~~~ 294 (401)
.....-.|||.+..|...+.+..++..|+ ..+.+ +.++...
T Consensus 445 ~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~n--d~~E~F~ 522 (791)
T KOG1222|consen 445 ALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKN--DNSESFG 522 (791)
T ss_pred HHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhc--CchHHHH
Confidence 43434456776666655555543443333 22222 2334445
Q ss_pred HHHHHHHHHHhCCH-------------------------------------------hhHHHHHhCCCcHHHHHHHHHhc
Q 015728 295 AIAMARIEQLLAIE-------------------------------------------NSKDALINNPNGVYALVKMVFRV 331 (401)
Q Consensus 295 ~~a~~~L~~La~~~-------------------------------------------~~~~~~~~~~g~i~~Lv~~l~~~ 331 (401)
-.++++|++|...+ +..+.+...+|.|+.|+++ ++.
T Consensus 523 ~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieL-L~a 601 (791)
T KOG1222|consen 523 LECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKLIDTLIEL-LQA 601 (791)
T ss_pred HHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHHH-HHh
Confidence 56777777776511 1222333455778888884 443
Q ss_pred C--ChhHHHHHHHHHHHHhcCCHHHHHHHHHcC-cHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHHhhc
Q 015728 332 S--DHEGSENAINSLMMICCDSLQAREEAICAG-VLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAEELK 399 (401)
Q Consensus 332 ~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g-~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e~~~ 399 (401)
. +.+..-.-+.+...+-.+ +..|..|+++- .-..|+.||.+. ..+.|+-.-..|..+++|..|=.|
T Consensus 602 ~QeDDEfV~QiiyVF~Q~l~H-e~tr~~miket~~~AylIDLMHDk-N~eiRkVCDn~LdIiae~d~EWAK 670 (791)
T KOG1222|consen 602 CQEDDEFVVQIIYVFLQFLKH-ELTRRLMIKETALGAYLIDLMHDK-NAEIRKVCDNALDIIAEHDKEWAK 670 (791)
T ss_pred hcccchHHHHHHHHHHHHHHH-HHHHHHHHhhccchHHHHHHHhcc-cHHHHHHHHHHHHHHHHhhHHHHH
Confidence 2 224444455566666666 44555666544 446699999887 889999999999999885555433
No 38
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.96 E-value=3.2e-10 Score=100.82 Aligned_cols=67 Identities=18% Similarity=0.280 Sum_probs=58.6
Q ss_pred CcccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCCcHHHHHHHHHHHHh
Q 015728 11 HLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLRHLINQWLQM 78 (401)
Q Consensus 11 ~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~n~~l~~~i~~~~~~ 78 (401)
.-++|-||..+|+-|+.++|||+||..||.+++. .+..||+|+......-++.+..++.+++.|...
T Consensus 24 s~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~-~qp~CP~Cr~~~~esrlr~~s~~~ei~es~~~~ 90 (391)
T COG5432 24 SMLRCRICDCRISIPCETTCGHTFCSLCIRRHLG-TQPFCPVCREDPCESRLRGSSGSREINESHARN 90 (391)
T ss_pred hHHHhhhhhheeecceecccccchhHHHHHHHhc-CCCCCccccccHHhhhcccchhHHHHHHhhhhc
Confidence 3579999999999999999999999999999998 566799999988776778888888888887653
No 39
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.93 E-value=5.1e-08 Score=92.89 Aligned_cols=216 Identities=11% Similarity=0.101 Sum_probs=152.4
Q ss_pred HHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHh------cCChHHHHHHhccCCcccchhhhHHHHHHHHHH
Q 015728 95 LSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQ------LGFLPLLLKQLFGKAESKFSQVYVQFVEESLSC 168 (401)
Q Consensus 95 ~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~------~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~ 168 (401)
...+..+|+..++..+.....+..+..+...++...+.+.+ .....++++++.+++.. ++..|+.
T Consensus 57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~--------i~~~a~~- 127 (312)
T PF03224_consen 57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSF--------IQLKAAF- 127 (312)
T ss_dssp -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHH--------HHHHHHH-
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHH--------HHHHHHH-
Confidence 44555666655566888999999999999999977777766 12678888888877644 8899999
Q ss_pred HHHhhcCCchhhhhhcccCCchHHHHHHhhc----CCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-
Q 015728 169 VQKLLLVGETESLNLLNEESKMESFIVLFEH----GSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV- 243 (401)
Q Consensus 169 ~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~----~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL- 243 (401)
+|..+....+...... ..+.++.++..|.+ .+.+.+..++..|.+| .... ++|..+.+. |+++.|+.+|
T Consensus 128 iLt~Ll~~~~~~~~~~-~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~L-L~~~---~~R~~f~~~-~~v~~l~~iL~ 201 (312)
T PF03224_consen 128 ILTSLLSQGPKRSEKL-VKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNL-LRSK---EYRQVFWKS-NGVSPLFDILR 201 (312)
T ss_dssp HHHHHHTSTTT--HHH-HHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHH-HTSH---HHHHHHHTH-HHHHHHHHHHH
T ss_pred HHHHHHHcCCccccch-HHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHH-hCcc---hhHHHHHhc-CcHHHHHHHHH
Confidence 8887775554433222 13567888888865 3445678889999999 6555 999999985 7789999999
Q ss_pred -----cC--CchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHh--hHHHH
Q 015728 244 -----HH--NSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIEN--SKDAL 314 (401)
Q Consensus 244 -----~~--~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~--~~~~~ 314 (401)
++ +.+.+-+++-++|-|+.+++....+.+.+.||.|+++++. ...+.+...++++|.||...+. ....+
T Consensus 202 ~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~--~~KEKvvRv~la~l~Nl~~~~~~~~~~~m 279 (312)
T PF03224_consen 202 KQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKD--SIKEKVVRVSLAILRNLLSKAPKSNIELM 279 (312)
T ss_dssp ---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH----SHHHHHHHHHHHHHTTSSSSTTHHHHH
T ss_pred hhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHh--cccchHHHHHHHHHHHHHhccHHHHHHHH
Confidence 22 2469999999999999999999999999999999999996 5667899999999999998765 56666
Q ss_pred HhCCCcHHHHHHHHH
Q 015728 315 INNPNGVYALVKMVF 329 (401)
Q Consensus 315 ~~~~g~i~~Lv~~l~ 329 (401)
+ . +.++++++.|.
T Consensus 280 v-~-~~~l~~l~~L~ 292 (312)
T PF03224_consen 280 V-L-CGLLKTLQNLS 292 (312)
T ss_dssp H-H-H-HHHHHHHHH
T ss_pred H-H-ccHHHHHHHHh
Confidence 5 4 34555555343
No 40
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=4.6e-07 Score=91.45 Aligned_cols=270 Identities=14% Similarity=0.173 Sum_probs=193.9
Q ss_pred hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHh
Q 015728 93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKL 172 (401)
Q Consensus 93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~ 172 (401)
|-+..|..-+.++ .-.+.|+.|+..|..+++. +|..+... |+++|+..|..+-. |+++...++. ++.+
T Consensus 22 ETI~kLcDRvess-TL~eDRR~A~rgLKa~srk---YR~~Vga~-Gmk~li~vL~~D~~------D~E~ik~~Ld-Tl~i 89 (970)
T KOG0946|consen 22 ETIEKLCDRVESS-TLLEDRRDAVRGLKAFSRK---YREEVGAQ-GMKPLIQVLQRDYM------DPEIIKYALD-TLLI 89 (970)
T ss_pred hHHHHHHHHHhhc-cchhhHHHHHHHHHHHHHH---HHHHHHHc-ccHHHHHHHhhccC------CHHHHHHHHH-HHHH
Confidence 4455554434433 4478999999999999975 77777555 58899999976544 3789999999 5555
Q ss_pred hcCCch------hhh-----------hhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHH
Q 015728 173 LLVGET------ESL-----------NLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRL 235 (401)
Q Consensus 173 l~~~~~------~~~-----------~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~ 235 (401)
+..+++ +.+ ..+...+-|..|+..+..-+-.+|..+...|..+.+.... +.+..+....-+
T Consensus 90 l~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~--e~q~~ll~~P~g 167 (970)
T KOG0946|consen 90 LTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPT--ELQDALLVSPMG 167 (970)
T ss_pred HHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCH--HHHHHHHHCchh
Confidence 554442 211 1344677899999999988999999999999998666553 888888777778
Q ss_pred HHHHHHHccCCch-hHHHHHHHHHHhcCCCchhHHHHh-cCcHHHHHHHHHhhccc-cchHHHHHHHHHHHHhCCHhhHH
Q 015728 236 LREIISLVHHNSE-ASDAGVRAFSALCSTETNRKTLVQ-EGAINGLIAYISNALTR-ERSLAAIAMARIEQLLAIENSKD 312 (401)
Q Consensus 236 i~~Lv~lL~~~~~-~~~~a~~aL~~Ls~~~~n~~~iv~-~G~v~~Lv~lL~~~~~~-~~~~~~~a~~~L~~La~~~~~~~ 312 (401)
|..|+.+|+++.+ ++-.+...|..|..+..+..++|. ..++..|..++.+.++. ..-+.+.++..|-+|-+.+....
T Consensus 168 IS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ 247 (970)
T KOG0946|consen 168 ISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQ 247 (970)
T ss_pred HHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchh
Confidence 9999999976655 888888889999988777777765 78999999999864322 34688999999999998776555
Q ss_pred HHHhCCCcHHHHHHHHHhc---CCh--------hH--HHHHHHHHHHHhcCC------HHHHHHHHHcCcHHHHHHHhhc
Q 015728 313 ALINNPNGVYALVKMVFRV---SDH--------EG--SENAINSLMMICCDS------LQAREEAICAGVLTQLLLLLQS 373 (401)
Q Consensus 313 ~~~~~~g~i~~Lv~~l~~~---~~~--------~~--~~~a~~~L~~l~~~~------~~~~~~~~~~g~v~~L~~ll~~ 373 (401)
.+.++.+.||.|.++ +.. ++. ++ ...++.++..+..-+ ..+++.+...+++..|..++-+
T Consensus 248 ~~FrE~~~i~rL~kl-L~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~ 326 (970)
T KOG0946|consen 248 NFFREGSYIPRLLKL-LSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMH 326 (970)
T ss_pred hHHhccccHHHHHhh-cCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcC
Confidence 555799999999984 432 221 11 112344444443221 1355688899999999997765
Q ss_pred CCCH
Q 015728 374 QCSN 377 (401)
Q Consensus 374 ~~~~ 377 (401)
++-+
T Consensus 327 ~~vp 330 (970)
T KOG0946|consen 327 PGVP 330 (970)
T ss_pred CCCc
Confidence 5344
No 41
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.89 E-value=1.4e-09 Score=70.51 Aligned_cols=39 Identities=44% Similarity=1.036 Sum_probs=35.9
Q ss_pred ccccccccCCce-EcCccccccHHhHHHHHH-cCCCCCCCC
Q 015728 15 CPISLDLFTDPV-TLCTGQTYDRSSIEKWLA-AGNLTCPVT 53 (401)
Q Consensus 15 C~iC~~~~~~Pv-~~~Cgh~fc~~Ci~~~~~-~~~~~CP~c 53 (401)
|+||.+.+.+|+ .++|||+||..|+.+|+. .+...||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 789999999999999999 566789987
No 42
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.88 E-value=7.4e-07 Score=86.96 Aligned_cols=276 Identities=11% Similarity=0.089 Sum_probs=189.5
Q ss_pred hhhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhc-----CChHHHHHHhccCCcccchhhhHHHHHHHH
Q 015728 92 IDSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQL-----GFLPLLLKQLFGKAESKFSQVYVQFVEESL 166 (401)
Q Consensus 92 ~~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~-----G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~ 166 (401)
+.-+.++..+++.. +..+..+..+.-+..+...++..-+.+.+. +...+++.+|...+.. ++..+.
T Consensus 52 ~~y~~~~l~ll~~~-~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~--------i~~~a~ 122 (429)
T cd00256 52 GQYVKTFVNLLSQI-DKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQF--------IVHMSF 122 (429)
T ss_pred HHHHHHHHHHHhcc-CcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchh--------HHHHHH
Confidence 35677777877654 557788888999999999988766666654 4667788888766544 888888
Q ss_pred HHHHHhhcCCchhhhhhcccCCchH----HHHHHhhcC-CHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHH
Q 015728 167 SCVQKLLLVGETESLNLLNEESKME----SFIVLFEHG-SCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIIS 241 (401)
Q Consensus 167 ~~~L~~l~~~~~~~~~~v~~~g~i~----~Lv~~L~~~-~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~ 241 (401)
. +|..+....... . ....++ -+...|+++ +...+.-++..|..| -..+ ++|..+.... ++++|+.
T Consensus 123 ~-iLt~l~~~~~~~---~-~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~L-L~~~---~~R~~f~~~~-~v~~L~~ 192 (429)
T cd00256 123 S-ILAKLACFGLAK---M-EGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQML-LRVD---EYRFAFVLAD-GVPTLVK 192 (429)
T ss_pred H-HHHHHHhcCccc---c-chhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHH-hCCc---hHHHHHHHcc-CHHHHHH
Confidence 8 787776433221 1 111233 334455554 456777888888887 5444 8898888764 6899999
Q ss_pred HccC---CchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCH-------hhH
Q 015728 242 LVHH---NSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIE-------NSK 311 (401)
Q Consensus 242 lL~~---~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~-------~~~ 311 (401)
+|+. +.+.+-.++-++|-|+.+++....+.+.|.|+.|+++++. ...+.+...++++|.||...+ ...
T Consensus 193 ~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~--s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~ 270 (429)
T cd00256 193 LLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKE--STKEKVIRIVLAIFRNLISKRVDREVKKTAA 270 (429)
T ss_pred HHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHh--hhhHHHHHHHHHHHHHHhhcccccchhhhHH
Confidence 9954 4479999999999999998877777789999999999996 566789999999999999743 122
Q ss_pred HHHHhCCCcHHHHHHHHHh----------------------------------------------cCChh-HHHH-----
Q 015728 312 DALINNPNGVYALVKMVFR----------------------------------------------VSDHE-GSEN----- 339 (401)
Q Consensus 312 ~~~~~~~g~i~~Lv~~l~~----------------------------------------------~~~~~-~~~~----- 339 (401)
..++ +.|. +.+++.|.. +.++. =+|+
T Consensus 271 ~~mv-~~~l-~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~ 348 (429)
T cd00256 271 LQMV-QCKV-LKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLN 348 (429)
T ss_pred HHHH-HcCh-HHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHH
Confidence 3343 4443 333332311 00000 0111
Q ss_pred -----HHHHHHHH--------------------hcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 015728 340 -----AINSLMMI--------------------CCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLR 391 (401)
Q Consensus 340 -----a~~~L~~l--------------------~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~ 391 (401)
.++.|..| +.+.++.|..+-+-|+=..++.||.++ ++.+|..|...+..+-
T Consensus 349 ~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~-d~~Vr~eAL~avQklm 424 (429)
T cd00256 349 EKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHE-DPNVRYEALLAVQKLM 424 (429)
T ss_pred hcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 22333333 333345666666889989999999888 9999999999888763
No 43
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=1.9e-09 Score=96.63 Aligned_cols=53 Identities=17% Similarity=0.427 Sum_probs=46.0
Q ss_pred CCCcccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCCCC
Q 015728 9 IPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSI 62 (401)
Q Consensus 9 ~~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~ 62 (401)
.+..++|.+|++-..+|-.+||||.||+.||..|..+ ...||.||..+.+.++
T Consensus 236 ~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~e-k~eCPlCR~~~~pskv 288 (293)
T KOG0317|consen 236 PEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSE-KAECPLCREKFQPSKV 288 (293)
T ss_pred CCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcc-ccCCCcccccCCCcce
Confidence 4456999999999999999999999999999999985 4459999998877543
No 44
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.83 E-value=1.7e-09 Score=69.86 Aligned_cols=36 Identities=28% Similarity=0.749 Sum_probs=23.2
Q ss_pred ccccccccCC----ceEcCccccccHHhHHHHHHcC---CCCCC
Q 015728 15 CPISLDLFTD----PVTLCTGQTYDRSSIEKWLAAG---NLTCP 51 (401)
Q Consensus 15 C~iC~~~~~~----Pv~~~Cgh~fc~~Ci~~~~~~~---~~~CP 51 (401)
||||.+ |.+ |+.++|||+||+.|+++++..+ .+.||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 888 9999999999999999999853 46676
No 45
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=2.3e-09 Score=89.19 Aligned_cols=53 Identities=23% Similarity=0.505 Sum_probs=43.5
Q ss_pred CCcccccccccccCC--ceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCCCCC
Q 015728 10 PHLFRCPISLDLFTD--PVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIV 63 (401)
Q Consensus 10 ~~~~~C~iC~~~~~~--Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~ 63 (401)
...+.||||++-+.+ |+.+.|||.||+.||.+.++ ....||.|++.++.+.+.
T Consensus 129 ~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk-~~~~CP~C~kkIt~k~~~ 183 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALK-NTNKCPTCRKKITHKQFH 183 (187)
T ss_pred ccccCCCceecchhhccccccccchhHHHHHHHHHHH-hCCCCCCcccccchhhhe
Confidence 346999999998865 55689999999999999998 456799999987766543
No 46
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.81 E-value=3.9e-09 Score=71.52 Aligned_cols=47 Identities=26% Similarity=0.430 Sum_probs=40.7
Q ss_pred CcccccccccccCCceEcCcccc-ccHHhHHHHHHcCCCCCCCCcccCC
Q 015728 11 HLFRCPISLDLFTDPVTLCTGQT-YDRSSIEKWLAAGNLTCPVTMQTLH 58 (401)
Q Consensus 11 ~~~~C~iC~~~~~~Pv~~~Cgh~-fc~~Ci~~~~~~~~~~CP~c~~~~~ 58 (401)
++..|+||++...+++..+|||. ||..|+.+|+. ....||.|++++.
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLK-RKKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH-TTSBBTTTTBB-S
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhcc-cCCCCCcCChhhc
Confidence 36789999999999999999999 99999999998 7788999998764
No 47
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=6.8e-07 Score=90.89 Aligned_cols=246 Identities=11% Similarity=0.119 Sum_probs=185.8
Q ss_pred cChHHHHHHHHHHHHHHhc-CchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcc
Q 015728 107 ATLETKLQIVQKIHVVLRE-SPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLN 185 (401)
Q Consensus 107 ~~~~~~~~a~~~L~~l~~~-~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~ 185 (401)
+++..|.+|+.+|+.+..- ++..-..+--.-+||.||.+|+.... .++...|+. +|.+|+.--+....+++
T Consensus 180 ~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n-------~DIMl~AcR-altyl~evlP~S~a~vV 251 (1051)
T KOG0168|consen 180 SDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHN-------FDIMLLACR-ALTYLCEVLPRSSAIVV 251 (1051)
T ss_pred CChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhcccc-------HHHHHHHHH-HHHHHHhhccchhheee
Confidence 4788999999999887744 33333333335589999999987764 689999999 88888754455667888
Q ss_pred cCCchHHHHHHhhc-CCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhHHHHHHHHHHhcC-
Q 015728 186 EESKMESFIVLFEH-GSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEASDAGVRAFSALCS- 262 (401)
Q Consensus 186 ~~g~i~~Lv~~L~~-~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~a~~aL~~Ls~- 262 (401)
+.++||.|+..|.. ...++-+++..+|..| |..+ .+.. ..+ |+|...+..|+ =+..+++.|+....|.|.
T Consensus 252 ~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~i-SR~H----~~Ai-L~A-G~l~a~LsylDFFSi~aQR~AlaiaaN~Cks 324 (1051)
T KOG0168|consen 252 DEHAIPVLLEKLLTIEYIDVAEQSLQALEKI-SRRH----PKAI-LQA-GALSAVLSYLDFFSIHAQRVALAIAANCCKS 324 (1051)
T ss_pred cccchHHHHHhhhhhhhhHHHHHHHHHHHHH-Hhhc----cHHH-Hhc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999987754 5778999999999999 8754 3444 455 77788887774 245689999999999994
Q ss_pred -CCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhC----CHhhHHHHHhCCCcHHHHHHHHHhcC----C
Q 015728 263 -TETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLA----IENSKDALINNPNGVYALVKMVFRVS----D 333 (401)
Q Consensus 263 -~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~----~~~~~~~~~~~~g~i~~Lv~~l~~~~----~ 333 (401)
.++.-.-++| ++|.|..+|+ ..+....+..+-.+..++. .++--.++. ..|.|....++ +... +
T Consensus 325 i~sd~f~~v~e--alPlL~~lLs---~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~-s~dLi~~~~qL-lsvt~t~Ls 397 (1051)
T KOG0168|consen 325 IRSDEFHFVME--ALPLLTPLLS---YQDKKPIESVCICLTRIADGFQHGPDKLDQLC-SHDLITNIQQL-LSVTPTILS 397 (1051)
T ss_pred CCCccchHHHH--HHHHHHHHHh---hccchhHHHHHHHHHHHHHhcccChHHHHHHh-chhHHHHHHHH-HhcCccccc
Confidence 4455555566 7999999999 5677888888888888875 344446665 77888888884 4332 2
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcC
Q 015728 334 HEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQ 374 (401)
Q Consensus 334 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~ 374 (401)
....-..++.|..+|++.+..+....+.++...|..+|+.-
T Consensus 398 ~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~ 438 (1051)
T KOG0168|consen 398 NGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGY 438 (1051)
T ss_pred ccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhcc
Confidence 23455678888889998888888999999999999988643
No 48
>PRK09687 putative lyase; Provisional
Probab=98.80 E-value=3.5e-07 Score=85.41 Aligned_cols=198 Identities=15% Similarity=0.079 Sum_probs=96.9
Q ss_pred ChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 015728 138 FLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIIS 217 (401)
Q Consensus 138 ~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s 217 (401)
.++.|+.+|.+.+. .++..|+. .|..+- ....++.+..++++++...|..|+++|..| .
T Consensus 24 ~~~~L~~~L~d~d~--------~vR~~A~~-aL~~~~-----------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~l-g 82 (280)
T PRK09687 24 NDDELFRLLDDHNS--------LKRISSIR-VLQLRG-----------GQDVFRLAIELCSSKNPIERDIGADILSQL-G 82 (280)
T ss_pred cHHHHHHHHhCCCH--------HHHHHHHH-HHHhcC-----------cchHHHHHHHHHhCCCHHHHHHHHHHHHhc-C
Confidence 35566666655543 36666666 554332 122345555556666666666666666666 3
Q ss_pred cccchhhhhhhhccchHHHHHHHHHc-c-CCchhHHHHHHHHHHhcCCCchh--------------------HH------
Q 015728 218 SSHETKELCCKLGKDDRLLREIISLV-H-HNSEASDAGVRAFSALCSTETNR--------------------KT------ 269 (401)
Q Consensus 218 ~~~~~~~~~~~i~~~~g~i~~Lv~lL-~-~~~~~~~~a~~aL~~Ls~~~~n~--------------------~~------ 269 (401)
... .. ...+++.|..++ + .+..++..|+.+|.+++....+. ..
T Consensus 83 ~~~---~~------~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg 153 (280)
T PRK09687 83 MAK---RC------QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALS 153 (280)
T ss_pred CCc---cc------hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHh
Confidence 211 00 012455555553 2 33446666666666664322111 00
Q ss_pred -HHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHh
Q 015728 270 -LVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMIC 348 (401)
Q Consensus 270 -iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~ 348 (401)
+-...+++.|+.+|. +.+..++..|+.+|..+.. ..+.+++.|++ ++.+.+..++..|+.+|..+-
T Consensus 154 ~~~~~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~---------~~~~~~~~L~~-~L~D~~~~VR~~A~~aLg~~~ 220 (280)
T PRK09687 154 VINDEAAIPLLINLLK---DPNGDVRNWAAFALNSNKY---------DNPDIREAFVA-MLQDKNEEIRIEAIIGLALRK 220 (280)
T ss_pred ccCCHHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCC---------CCHHHHHHHHH-HhcCCChHHHHHHHHHHHccC
Confidence 001124555555555 3444455555555554411 12234455555 344444455555555554431
Q ss_pred cCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728 349 CDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS 392 (401)
Q Consensus 349 ~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~ 392 (401)
+ .-+++.|+..++++ . .+..|..+|..+..
T Consensus 221 --~---------~~av~~Li~~L~~~-~--~~~~a~~ALg~ig~ 250 (280)
T PRK09687 221 --D---------KRVLSVLIKELKKG-T--VGDLIIEAAGELGD 250 (280)
T ss_pred --C---------hhHHHHHHHHHcCC-c--hHHHHHHHHHhcCC
Confidence 1 13567777777665 3 45566666665543
No 49
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.74 E-value=4.4e-09 Score=69.21 Aligned_cols=40 Identities=43% Similarity=0.862 Sum_probs=33.5
Q ss_pred cccccccccC---CceEcCccccccHHhHHHHHHcCCCCCCCCc
Q 015728 14 RCPISLDLFT---DPVTLCTGQTYDRSSIEKWLAAGNLTCPVTM 54 (401)
Q Consensus 14 ~C~iC~~~~~---~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~ 54 (401)
.|+||++.|. .++.++|||.||..|+.+|+.. ...||.||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence 5999999884 4556899999999999999985 56899996
No 50
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.73 E-value=2.2e-06 Score=92.91 Aligned_cols=220 Identities=15% Similarity=0.108 Sum_probs=121.3
Q ss_pred HHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCC
Q 015728 97 TLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVG 176 (401)
Q Consensus 97 ~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~ 176 (401)
.|.+.|. +.++..|+.|+..|.... ..++++.|+.+|++++. .++..|+. .|..+...
T Consensus 625 ~L~~~L~--D~d~~VR~~Av~~L~~~~-----------~~~~~~~L~~aL~D~d~--------~VR~~Aa~-aL~~l~~~ 682 (897)
T PRK13800 625 ELAPYLA--DPDPGVRRTAVAVLTETT-----------PPGFGPALVAALGDGAA--------AVRRAAAE-GLRELVEV 682 (897)
T ss_pred HHHHHhc--CCCHHHHHHHHHHHhhhc-----------chhHHHHHHHHHcCCCH--------HHHHHHHH-HHHHHHhc
Confidence 3434443 456777888877777643 34568889999977664 48888887 66654210
Q ss_pred chhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cCCchhHHHHHH
Q 015728 177 ETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-HHNSEASDAGVR 255 (401)
Q Consensus 177 ~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~a~~ 255 (401)
....+.|...|+++++.+|..|+.+|..+ ...+ ...|+..| +.+..++..|+.
T Consensus 683 ----------~~~~~~L~~~L~~~d~~VR~~A~~aL~~~-~~~~---------------~~~l~~~L~D~d~~VR~~Av~ 736 (897)
T PRK13800 683 ----------LPPAPALRDHLGSPDPVVRAAALDVLRAL-RAGD---------------AALFAAALGDPDHRVRIEAVR 736 (897)
T ss_pred ----------cCchHHHHHHhcCCCHHHHHHHHHHHHhh-ccCC---------------HHHHHHHhcCCCHHHHHHHHH
Confidence 11234566677777777777777777665 3111 12344445 334446666666
Q ss_pred HHHHhcC---------CCc--hhHHHH---------hcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHH
Q 015728 256 AFSALCS---------TET--NRKTLV---------QEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALI 315 (401)
Q Consensus 256 aL~~Ls~---------~~~--n~~~iv---------~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~ 315 (401)
+|..+.. +++ .|...+ +.+.++.|..++. +.+..++..|+.+|..+...
T Consensus 737 aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~-------- 805 (897)
T PRK13800 737 ALVSVDDVESVAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCP-------- 805 (897)
T ss_pred HHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCc--------
Confidence 6554310 000 011110 1122455555555 45555666666655544211
Q ss_pred hCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 015728 316 NNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLL 390 (401)
Q Consensus 316 ~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l 390 (401)
...+..++. .+++.+..++..|+.+|..+.. ..+++.|+.+|++. +..+|..|+..|..+
T Consensus 806 --~~~~~~l~~-aL~d~d~~VR~~Aa~aL~~l~~-----------~~a~~~L~~~L~D~-~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 806 --PDDVAAATA-ALRASAWQVRQGAARALAGAAA-----------DVAVPALVEALTDP-HLDVRKAAVLALTRW 865 (897)
T ss_pred --chhHHHHHH-HhcCCChHHHHHHHHHHHhccc-----------cchHHHHHHHhcCC-CHHHHHHHHHHHhcc
Confidence 112233444 3444555566666666655421 23447788888776 788888888888765
No 51
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.72 E-value=9.4e-09 Score=92.05 Aligned_cols=48 Identities=19% Similarity=0.352 Sum_probs=40.3
Q ss_pred CCcccccccccccCCc--------eEcCccccccHHhHHHHHHcCCCCCCCCcccCC
Q 015728 10 PHLFRCPISLDLFTDP--------VTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLH 58 (401)
Q Consensus 10 ~~~~~C~iC~~~~~~P--------v~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~ 58 (401)
.++..|+||++.+.++ +.++|||.||..||.+|+. ...+||+||..+.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~-~~~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKK-EKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHh-cCCCCCCCCCEee
Confidence 4568999999987653 4468999999999999987 5678999998765
No 52
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.68 E-value=2.6e-05 Score=76.32 Aligned_cols=243 Identities=14% Similarity=0.107 Sum_probs=169.1
Q ss_pred cCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhccc-----CCchHHHHHHhhcCCHHHHHHHHH
Q 015728 136 LGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNE-----ESKMESFIVLFEHGSCSIKKRLCH 210 (401)
Q Consensus 136 ~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~-----~g~i~~Lv~~L~~~~~~~~~~aa~ 210 (401)
...+..++.+|+..+. .++.++.+. ++.-|..+++.....+.+ .....+++.+|.+++.-++..++.
T Consensus 52 ~~y~~~~l~ll~~~~~-------~d~vqyvL~-Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~ 123 (429)
T cd00256 52 GQYVKTFVNLLSQIDK-------DDTVRYVLT-LIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFS 123 (429)
T ss_pred HHHHHHHHHHHhccCc-------HHHHHHHHH-HHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHH
Confidence 3567888888876543 568888888 777776555544333333 356788889998888889999999
Q ss_pred HHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-C-CchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhcc
Q 015728 211 LVEVIISSSHETKELCCKLGKDDRLLREIISLVH-H-NSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALT 288 (401)
Q Consensus 211 ~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~-~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~ 288 (401)
+|..+++... .+-... ...-.+.-|...|+ . +...+..++.+|.+|-..++.|..+++.+++++|+.+|+.. .
T Consensus 124 iLt~l~~~~~---~~~~~~-~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~-~ 198 (429)
T cd00256 124 ILAKLACFGL---AKMEGS-DLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNA-T 198 (429)
T ss_pred HHHHHHhcCc---cccchh-HHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhc-c
Confidence 9999844332 110000 00012234445553 2 35588889999999999999999999999999999999842 1
Q ss_pred ccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCC------HHHHHHHHHcC
Q 015728 289 RERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDS------LQAREEAICAG 362 (401)
Q Consensus 289 ~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~------~~~~~~~~~~g 362 (401)
.+.+++=.++-+++.|+-.++....+ .+.+.|+.|++.+.....+++.+.++.+|.|+...+ ......|+..|
T Consensus 199 ~~~Ql~Y~~ll~lWlLSF~~~~~~~~-~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~ 277 (429)
T cd00256 199 LGFQLQYQSIFCIWLLTFNPHAAEVL-KRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCK 277 (429)
T ss_pred ccHHHHHHHHHHHHHHhccHHHHHhh-ccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcC
Confidence 25577778999999999988877766 478999999995544456788999999999998743 24556777777
Q ss_pred cHHHHHHHhhcC-CCHHHHHHHHHHHHHHHH
Q 015728 363 VLTQLLLLLQSQ-CSNRTKTKARMLLKLLRS 392 (401)
Q Consensus 363 ~v~~L~~ll~~~-~~~~~~~~A~~~L~~l~~ 392 (401)
.++.+-.|.... .++...+.-..+-..|.+
T Consensus 278 l~~~l~~L~~rk~~DedL~edl~~L~e~L~~ 308 (429)
T cd00256 278 VLKTLQSLEQRKYDDEDLTDDLKFLTEELKN 308 (429)
T ss_pred hHHHHHHHhcCCCCcHHHHHHHHHHHHHHHH
Confidence 766555554333 345555555555555544
No 53
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.65 E-value=2.6e-08 Score=65.51 Aligned_cols=43 Identities=44% Similarity=0.939 Sum_probs=37.9
Q ss_pred cccccccccCCceEcC-ccccccHHhHHHHHHcCCCCCCCCccc
Q 015728 14 RCPISLDLFTDPVTLC-TGQTYDRSSIEKWLAAGNLTCPVTMQT 56 (401)
Q Consensus 14 ~C~iC~~~~~~Pv~~~-Cgh~fc~~Ci~~~~~~~~~~CP~c~~~ 56 (401)
.|+||.+.+.+|+.+. |||.||..|+..|+..+...||.|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 4999999998888765 999999999999998667789999864
No 54
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=1.5e-06 Score=81.28 Aligned_cols=188 Identities=15% Similarity=0.163 Sum_probs=146.3
Q ss_pred hhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhh
Q 015728 102 LQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESL 181 (401)
Q Consensus 102 l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~ 181 (401)
+.+.+.+.+.+..|+..|..++..=+ |...|...|+..+++..|++++. .+++.|++ ++.....+++...
T Consensus 90 ~~~~s~~le~ke~ald~Le~lve~iD-nAndl~~~ggl~~ll~~l~~~~~--------~lR~~Aa~-Vigt~~qNNP~~Q 159 (342)
T KOG2160|consen 90 LNSSSVDLEDKEDALDNLEELVEDID-NANDLISLGGLVPLLGYLENSDA--------ELRELAAR-VIGTAVQNNPKSQ 159 (342)
T ss_pred cCcccCCHHHHHHHHHHHHHHHHhhh-hHHhHhhccCHHHHHHHhcCCcH--------HHHHHHHH-HHHHHHhcCHHHH
Confidence 45567789999999999999997765 88889999999999999988874 59999999 9998888888877
Q ss_pred hhcccCCchHHHHHHhhcC-CHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-c--CCchhHHHHHHHH
Q 015728 182 NLLNEESKMESFIVLFEHG-SCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-H--HNSEASDAGVRAF 257 (401)
Q Consensus 182 ~~v~~~g~i~~Lv~~L~~~-~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~--~~~~~~~~a~~aL 257 (401)
..+.+.|+++.|+..|.+. +...+..|..++..++.... ..-..+-...| ...|..+| + .+...++.++..+
T Consensus 160 e~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~---~g~~~fl~~~G-~~~L~~vl~~~~~~~~lkrK~~~Ll 235 (342)
T KOG2160|consen 160 EQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNK---PGQDEFLKLNG-YQVLRDVLQSNNTSVKLKRKALFLL 235 (342)
T ss_pred HHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCc---HHHHHHHhcCC-HHHHHHHHHcCCcchHHHHHHHHHH
Confidence 7777999999999999865 45788899999988855544 33333444445 69999999 3 2445899999999
Q ss_pred HHhcC-CCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhC
Q 015728 258 SALCS-TETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLA 306 (401)
Q Consensus 258 ~~Ls~-~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~ 306 (401)
.+|.. .......+-..|....++.+.. ..+.++.+.++.++..+..
T Consensus 236 ~~Ll~~~~s~~d~~~~~~f~~~~~~l~~---~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 236 SLLLQEDKSDEDIASSLGFQRVLENLIS---SLDFEVNEAALTALLSLLS 282 (342)
T ss_pred HHHHHhhhhhhhHHHHhhhhHHHHHHhh---ccchhhhHHHHHHHHHHHH
Confidence 99884 5555555555677777777776 5677788888877766654
No 55
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.64 E-value=8.1e-06 Score=88.57 Aligned_cols=151 Identities=13% Similarity=0.064 Sum_probs=110.5
Q ss_pred hHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhHHHHHHHHHHhcCCCchhH
Q 015728 190 MESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEASDAGVRAFSALCSTETNRK 268 (401)
Q Consensus 190 i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~a~~aL~~Ls~~~~n~~ 268 (401)
.+.|...+.+++.++|..++.+|..+ .... .+.++.|..+++ +++.++..|+.+|.++...
T Consensus 744 ~~~l~~~l~D~~~~VR~~aa~aL~~~-~~~~------------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~----- 805 (897)
T PRK13800 744 VESVAGAATDENREVRIAVAKGLATL-GAGG------------APAGDAVRALTGDPDPLVRAAALAALAELGCP----- 805 (897)
T ss_pred cHHHHHHhcCCCHHHHHHHHHHHHHh-cccc------------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc-----
Confidence 44556667777777777777777766 3221 134688888884 5667999999998877432
Q ss_pred HHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHh
Q 015728 269 TLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMIC 348 (401)
Q Consensus 269 ~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~ 348 (401)
..+++.++..|. +++..++..|+.+|..+. ....++.|+. ++++.+..++..|+.+|..+.
T Consensus 806 ----~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~-----------~~~a~~~L~~-~L~D~~~~VR~~A~~aL~~~~ 866 (897)
T PRK13800 806 ----PDDVAAATAALR---ASAWQVRQGAARALAGAA-----------ADVAVPALVE-ALTDPHLDVRKAAVLALTRWP 866 (897)
T ss_pred ----chhHHHHHHHhc---CCChHHHHHHHHHHHhcc-----------ccchHHHHHH-HhcCCCHHHHHHHHHHHhccC
Confidence 113366888888 678889999999998653 4456789999 678888899999999998862
Q ss_pred cCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHH
Q 015728 349 CDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLK 388 (401)
Q Consensus 349 ~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~ 388 (401)
.++. +.+.|...++++ +..+|+.|..+|+
T Consensus 867 -~~~~---------a~~~L~~al~D~-d~~Vr~~A~~aL~ 895 (897)
T PRK13800 867 -GDPA---------ARDALTTALTDS-DADVRAYARRALA 895 (897)
T ss_pred -CCHH---------HHHHHHHHHhCC-CHHHHHHHHHHHh
Confidence 2333 246677778776 8999999999886
No 56
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=2.3e-08 Score=95.35 Aligned_cols=69 Identities=29% Similarity=0.595 Sum_probs=60.5
Q ss_pred CCCCcccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCCcHHHHHHHHHHHHhC
Q 015728 8 TIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLRHLINQWLQMG 79 (401)
Q Consensus 8 ~~~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~n~~l~~~i~~~~~~~ 79 (401)
...+++.||||.++|.+|++++|||+||..|+..++. ....||.|+. ... .+.+|..+.++++.+++.+
T Consensus 9 ~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~-~~~-~~~~n~~l~~~~~~~~~~~ 77 (386)
T KOG2177|consen 9 VLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP-PSR-NLRPNVLLANLVERLRQLR 77 (386)
T ss_pred hccccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC-chh-ccCccHHHHHHHHHHHhcC
Confidence 4568899999999999998899999999999999998 7788999996 333 6679999999999998876
No 57
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=1.2e-05 Score=75.34 Aligned_cols=179 Identities=15% Similarity=0.162 Sum_probs=139.2
Q ss_pred cCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cCCchhHHHHHHHHHHhcC-CCchhHHHHhcCcH
Q 015728 199 HGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-HHNSEASDAGVRAFSALCS-TETNRKTLVQEGAI 276 (401)
Q Consensus 199 ~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~a~~aL~~Ls~-~~~n~~~iv~~G~v 276 (401)
+.+.+.++.|..-|..+ ..+- +|...+... |++.+++..+ .++..+++.|+++|...++ ++..+..+.+.|+.
T Consensus 94 s~~le~ke~ald~Le~l-ve~i---DnAndl~~~-ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L 168 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEEL-VEDI---DNANDLISL-GGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGAL 168 (342)
T ss_pred cCCHHHHHHHHHHHHHH-HHhh---hhHHhHhhc-cCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccH
Confidence 44678888888888887 4433 788888887 5568888888 4667799999999999985 67789999999999
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHhCCH-hhHHHHHhCCCcHHHHHHHHHhc--CChhHHHHHHHHHHHHhcCCHH
Q 015728 277 NGLIAYISNALTRERSLAAIAMARIEQLLAIE-NSKDALINNPNGVYALVKMVFRV--SDHEGSENAINSLMMICCDSLQ 353 (401)
Q Consensus 277 ~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~-~~~~~~~~~~g~i~~Lv~~l~~~--~~~~~~~~a~~~L~~l~~~~~~ 353 (401)
+.|+..|.. +++..++..|+.++..|-++. .+..++. ..++...|... +.. .+...+..++..+..|...+..
T Consensus 169 ~~Ll~~ls~--~~~~~~r~kaL~AissLIRn~~~g~~~fl-~~~G~~~L~~v-l~~~~~~~~lkrK~~~Ll~~Ll~~~~s 244 (342)
T KOG2160|consen 169 SKLLKILSS--DDPNTVRTKALFAISSLIRNNKPGQDEFL-KLNGYQVLRDV-LQSNNTSVKLKRKALFLLSLLLQEDKS 244 (342)
T ss_pred HHHHHHHcc--CCCchHHHHHHHHHHHHHhcCcHHHHHHH-hcCCHHHHHHH-HHcCCcchHHHHHHHHHHHHHHHhhhh
Confidence 999999985 667778899999999999765 4667775 66779999995 544 4667889999999999887665
Q ss_pred HHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHH
Q 015728 354 AREEAICAGVLTQLLLLLQSQCSNRTKTKARMLL 387 (401)
Q Consensus 354 ~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L 387 (401)
....+...|....+..+.... ....++.|...+
T Consensus 245 ~~d~~~~~~f~~~~~~l~~~l-~~~~~e~~l~~~ 277 (342)
T KOG2160|consen 245 DEDIASSLGFQRVLENLISSL-DFEVNEAALTAL 277 (342)
T ss_pred hhhHHHHhhhhHHHHHHhhcc-chhhhHHHHHHH
Confidence 555666677777777776665 666666665443
No 58
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=1.2e-08 Score=93.76 Aligned_cols=68 Identities=25% Similarity=0.327 Sum_probs=58.6
Q ss_pred CCCcccccccccccCCceEc-CccccccHHhHHHHHHcCCCCCCCCcccCCC-CCCCCcHHHHHHHHHHH
Q 015728 9 IPHLFRCPISLDLFTDPVTL-CTGQTYDRSSIEKWLAAGNLTCPVTMQTLHD-PSIVPNHTLRHLINQWL 76 (401)
Q Consensus 9 ~~~~~~C~iC~~~~~~Pv~~-~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~-~~~~~n~~l~~~i~~~~ 76 (401)
+..++.||||+++++..+++ .|+|.||..||...+..+...||.||+.+.. +.++++..+..+|.++-
T Consensus 40 ~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i~ 109 (381)
T KOG0311|consen 40 FDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKIY 109 (381)
T ss_pred hhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHHh
Confidence 45679999999999999987 4999999999999999899999999998754 47888888888876654
No 59
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.56 E-value=6.4e-08 Score=61.41 Aligned_cols=39 Identities=54% Similarity=1.047 Sum_probs=35.6
Q ss_pred ccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCC
Q 015728 15 CPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVT 53 (401)
Q Consensus 15 C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c 53 (401)
|+||.+...+++.++|||.||..|+..|+..+...||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 899999999999999999999999999998666779987
No 60
>PHA02926 zinc finger-like protein; Provisional
Probab=98.50 E-value=7.3e-08 Score=83.43 Aligned_cols=50 Identities=12% Similarity=0.309 Sum_probs=39.6
Q ss_pred CCCcccccccccccCC---------ceEcCccccccHHhHHHHHHcC-----CCCCCCCcccCC
Q 015728 9 IPHLFRCPISLDLFTD---------PVTLCTGQTYDRSSIEKWLAAG-----NLTCPVTMQTLH 58 (401)
Q Consensus 9 ~~~~~~C~iC~~~~~~---------Pv~~~Cgh~fc~~Ci~~~~~~~-----~~~CP~c~~~~~ 58 (401)
..++..|+||++...+ ++..+|+|.||..||..|.... ...||.||..+.
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 3457899999997643 3445899999999999999842 356999998875
No 61
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.49 E-value=1.5e-07 Score=86.70 Aligned_cols=62 Identities=18% Similarity=0.342 Sum_probs=45.6
Q ss_pred Ccccccccccc-cCCce----EcCccccccHHhHHHHHHcCCCCCCCCcccCCCCC----CCCcHHHHHHH
Q 015728 11 HLFRCPISLDL-FTDPV----TLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPS----IVPNHTLRHLI 72 (401)
Q Consensus 11 ~~~~C~iC~~~-~~~Pv----~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~----~~~n~~l~~~i 72 (401)
++..||+|... +..|- +.+|||+||..|+...|..+...||.|+..+.... +..+..+.+.+
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q~F~D~~vekEV 72 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQLFEDPTVEKEV 72 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccccccccHHHHHHH
Confidence 35689999992 34443 12699999999999999877788999999887665 44554444443
No 62
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.46 E-value=1.2e-07 Score=62.21 Aligned_cols=41 Identities=17% Similarity=0.512 Sum_probs=34.5
Q ss_pred ccccccccc---CCceEcCccccccHHhHHHHHHcCCCCCCCCcc
Q 015728 14 RCPISLDLF---TDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQ 55 (401)
Q Consensus 14 ~C~iC~~~~---~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~ 55 (401)
.|++|.+.+ ..|+.++|||+||..|+..+. .....||.|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 489999988 356678999999999999887 45678999974
No 63
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=98.45 E-value=1.1e-07 Score=87.05 Aligned_cols=67 Identities=21% Similarity=0.381 Sum_probs=55.2
Q ss_pred CCCCcccccccccccCCceEc-CccccccHHhHHHHHHcCCCCCCCCcccCCCC----CCCCcHHHHHHHHHH
Q 015728 8 TIPHLFRCPISLDLFTDPVTL-CTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDP----SIVPNHTLRHLINQW 75 (401)
Q Consensus 8 ~~~~~~~C~iC~~~~~~Pv~~-~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~----~~~~n~~l~~~i~~~ 75 (401)
++.+...|.+|..+|.|+.|+ .|-||||+.||.+++.. ..+||.|+..+... .+..+..++.++.++
T Consensus 11 ~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKL 82 (331)
T KOG2660|consen 11 ELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKL 82 (331)
T ss_pred hcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccCCcchHHHHHHHHH
Confidence 356688999999999999986 69999999999999995 88999998776432 467778888777543
No 64
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=1.3e-07 Score=83.89 Aligned_cols=51 Identities=16% Similarity=0.247 Sum_probs=43.6
Q ss_pred CCcccccccccccCCceEcCccccccHHhHHH-HHHcCCCCCCCCcccCCCC
Q 015728 10 PHLFRCPISLDLFTDPVTLCTGQTYDRSSIEK-WLAAGNLTCPVTMQTLHDP 60 (401)
Q Consensus 10 ~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~-~~~~~~~~CP~c~~~~~~~ 60 (401)
..+++|+||.+.+.+|..++|||.||..||.. |-.+....||.||.....+
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk 264 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPK 264 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccch
Confidence 35899999999999999999999999999999 5554555699999876554
No 65
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=1.2e-07 Score=91.62 Aligned_cols=69 Identities=20% Similarity=0.416 Sum_probs=53.8
Q ss_pred cccccccccccCCceEcCccccccHHhHHHHHHc----CCCCCCCCcccCCCCCCCC----cHHHHHHHHHHHHhCC
Q 015728 12 LFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAA----GNLTCPVTMQTLHDPSIVP----NHTLRHLINQWLQMGG 80 (401)
Q Consensus 12 ~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~----~~~~CP~c~~~~~~~~~~~----n~~l~~~i~~~~~~~~ 80 (401)
+..||||++...-|+.+.|||.||..||.++|.. +...||.|+..+..+++.+ +..-..-++.+..-||
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~qkke~l~~~~~~ng 262 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDDQKKEELKLHQDPNG 262 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeeccccccHHHHHHhcccC
Confidence 7899999999999999999999999999999985 3578999998887754332 2223333666666676
No 66
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=1.9e-05 Score=80.76 Aligned_cols=201 Identities=14% Similarity=0.202 Sum_probs=151.0
Q ss_pred HHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhhcC-CHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHH
Q 015728 161 FVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHG-SCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREI 239 (401)
Q Consensus 161 ~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~-~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~L 239 (401)
.|-+|+.-+--+|...+++....+--...||.|+.+|+.. +.+++..|+++|.+|.-... .....+++. ++||.|
T Consensus 184 ~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP---~S~a~vV~~-~aIPvl 259 (1051)
T KOG0168|consen 184 QQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLP---RSSAIVVDE-HAIPVL 259 (1051)
T ss_pred HHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhcc---chhheeecc-cchHHH
Confidence 5555655355566667776655443345799999999865 78999999999999943333 667777774 899999
Q ss_pred HHHc--cCCchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhC--CHhhHHHHH
Q 015728 240 ISLV--HHNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLA--IENSKDALI 315 (401)
Q Consensus 240 v~lL--~~~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~--~~~~~~~~~ 315 (401)
+.-| -...++.++++.||-.|++.+. ..+.++|++-..+..|. =-+..++..|+++-.|.|. .++.-..++
T Consensus 260 ~~kL~~IeyiDvAEQ~LqALE~iSR~H~--~AiL~AG~l~a~LsylD---FFSi~aQR~AlaiaaN~Cksi~sd~f~~v~ 334 (1051)
T KOG0168|consen 260 LEKLLTIEYIDVAEQSLQALEKISRRHP--KAILQAGALSAVLSYLD---FFSIHAQRVALAIAANCCKSIRSDEFHFVM 334 (1051)
T ss_pred HHhhhhhhhhHHHHHHHHHHHHHHhhcc--HHHHhcccHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcCCCccchHHH
Confidence 9866 3566799999999999997553 56789999999999886 2455689999999999996 355666665
Q ss_pred hCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhc---CCHHHHHHHHHcCcHHHHHHHhhcC
Q 015728 316 NNPNGVYALVKMVFRVSDHEGSENAINSLMMICC---DSLQAREEAICAGVLTQLLLLLQSQ 374 (401)
Q Consensus 316 ~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~---~~~~~~~~~~~~g~v~~L~~ll~~~ 374 (401)
.++|.|-. ++...+....+.+.-++..++. ++++.-+++...|.|....+|+...
T Consensus 335 ---ealPlL~~-lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt 392 (1051)
T KOG0168|consen 335 ---EALPLLTP-LLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVT 392 (1051)
T ss_pred ---HHHHHHHH-HHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcC
Confidence 57888888 6777776888888888877754 3456666777888887777776543
No 67
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.41 E-value=5.4e-05 Score=75.67 Aligned_cols=139 Identities=17% Similarity=0.195 Sum_probs=107.4
Q ss_pred hHHHHHHHHHHhcC-CCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCC-HhhHHHHHhCCCcHHHHHH
Q 015728 249 ASDAGVRAFSALCS-TETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAI-ENSKDALINNPNGVYALVK 326 (401)
Q Consensus 249 ~~~~a~~aL~~Ls~-~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~-~~~~~~~~~~~g~i~~Lv~ 326 (401)
...+|..++.+++. ...-+...-+..++.+||++|. +++..++..++++|.||... ...+..++ ..|+|..+.+
T Consensus 393 ~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~---dp~~~i~~~~lgai~NlVmefs~~kskfl-~~ngId~l~s 468 (678)
T KOG1293|consen 393 FVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLM---DPEIMIMGITLGAICNLVMEFSNLKSKFL-RNNGIDILES 468 (678)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhh---CcchhHHHHHHHHHHHHHhhcccHHHHHH-HcCcHHHHHH
Confidence 44444445555553 2223444556779999999998 78889999999999999965 66778887 7899999999
Q ss_pred HHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728 327 MVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS 392 (401)
Q Consensus 327 ~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~ 392 (401)
+....+...+..++++|.++..++++..+...-......++..+-.+++..++|-+..+||.|.=
T Consensus 469 -~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c 533 (678)
T KOG1293|consen 469 -MLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTC 533 (678)
T ss_pred -HhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhc
Confidence 56666778999999999999999887776666666666665555555599999999999998864
No 68
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.38 E-value=4.7e-06 Score=67.07 Aligned_cols=150 Identities=13% Similarity=0.158 Sum_probs=120.3
Q ss_pred HHHHHHHHHcc--CCchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhH
Q 015728 234 RLLREIISLVH--HNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSK 311 (401)
Q Consensus 234 g~i~~Lv~lL~--~~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~ 311 (401)
|-+..||+=.. .+.++++....=|.|.+-+|.|-..+.+..++...+.-|. ..+..+++-+.+.|+|||.+..+.
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~---e~ne~LvefgIgglCNlC~d~~n~ 92 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLE---EQNELLVEFGIGGLCNLCLDKTNA 92 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhh---cccHHHHHHhHHHHHhhccChHHH
Confidence 66778888773 4677999999999999999999999999999999999999 688899999999999999999999
Q ss_pred HHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 015728 312 DALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKL 389 (401)
Q Consensus 312 ~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~ 389 (401)
..|. +++++|..+. .+.+........|+.+|..|+...+.-|.++..-.++..+...-.+. +..-|.-|.+.|..
T Consensus 93 ~~I~-ea~g~plii~-~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s~-s~~~rnLa~~fl~~ 167 (173)
T KOG4646|consen 93 KFIR-EALGLPLIIF-VLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRESK-SHDERNLASAFLDK 167 (173)
T ss_pred HHHH-HhcCCceEEe-ecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHHh-hHHHHHHHHHHHHh
Confidence 9996 8899999998 56666667788899999999998877887777766666555543233 33444444444443
No 69
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.38 E-value=3e-05 Score=78.77 Aligned_cols=194 Identities=15% Similarity=0.218 Sum_probs=157.2
Q ss_pred CCchHHHHHHhhcCC-HHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc---CCchhHHHHHHHHHHhcC
Q 015728 187 ESKMESFIVLFEHGS-CSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH---HNSEASDAGVRAFSALCS 262 (401)
Q Consensus 187 ~g~i~~Lv~~L~~~~-~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~---~~~~~~~~a~~aL~~Ls~ 262 (401)
+..|+.|++.+.+.+ .+-|..|+..|..+ |. .+|..++.. | +++|+..|. .+++..+.++..++++.+
T Consensus 21 aETI~kLcDRvessTL~eDRR~A~rgLKa~-sr-----kYR~~Vga~-G-mk~li~vL~~D~~D~E~ik~~LdTl~il~~ 92 (970)
T KOG0946|consen 21 AETIEKLCDRVESSTLLEDRRDAVRGLKAF-SR-----KYREEVGAQ-G-MKPLIQVLQRDYMDPEIIKYALDTLLILTS 92 (970)
T ss_pred HhHHHHHHHHHhhccchhhHHHHHHHHHHH-HH-----HHHHHHHHc-c-cHHHHHHHhhccCCHHHHHHHHHHHHHHHh
Confidence 346999999998776 48899999999999 63 889998874 5 599999993 367799999999999987
Q ss_pred CCc------h-h----------HHHH-hcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhC--CHhhHHHHHhCCCcHH
Q 015728 263 TET------N-R----------KTLV-QEGAINGLIAYISNALTRERSLAAIAMARIEQLLA--IENSKDALINNPNGVY 322 (401)
Q Consensus 263 ~~~------n-~----------~~iv-~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~--~~~~~~~~~~~~g~i~ 322 (401)
+++ + + ..++ ..|-|..|+..+. ..+-.++-.++..|..|-. ..+-+..+...+-+|.
T Consensus 93 ~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e---~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS 169 (970)
T KOG0946|consen 93 HDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLE---EFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGIS 169 (970)
T ss_pred cCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHH---hhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHH
Confidence 663 2 2 2233 3678999999998 6788899999999998874 5678888888999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCC-CH--HHHHHHHHHHHHHHH
Q 015728 323 ALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQC-SN--RTKTKARMLLKLLRS 392 (401)
Q Consensus 323 ~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~-~~--~~~~~A~~~L~~l~~ 392 (401)
.++. +++++...++..++-.|..|..++..+++.+.=++++..|+.+++..+ .+ -+-+-+..+|..|-|
T Consensus 170 ~lmd-lL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK 241 (970)
T KOG0946|consen 170 KLMD-LLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLK 241 (970)
T ss_pred HHHH-HHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHh
Confidence 9999 677777678889999999999999888888889999999999997543 33 356666666666655
No 70
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=2.4e-07 Score=93.98 Aligned_cols=55 Identities=13% Similarity=0.319 Sum_probs=49.4
Q ss_pred CCcccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCC
Q 015728 10 PHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVP 64 (401)
Q Consensus 10 ~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~ 64 (401)
..-++||+|..-+++-|.+.|||.||..|+.+.+..+...||.|+..|...++.+
T Consensus 641 K~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~ 695 (698)
T KOG0978|consen 641 KELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHR 695 (698)
T ss_pred HhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccc
Confidence 3468999999999999999999999999999999988999999999998776653
No 71
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.27 E-value=4.3e-05 Score=76.34 Aligned_cols=148 Identities=11% Similarity=0.111 Sum_probs=109.7
Q ss_pred CCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cCCchhHHHHHHHHHHhc-CCCchhHHHHhcCcHH
Q 015728 200 GSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-HHNSEASDAGVRAFSALC-STETNRKTLVQEGAIN 277 (401)
Q Consensus 200 ~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~a~~aL~~Ls-~~~~n~~~iv~~G~v~ 277 (401)
.+......|...+.++ +..- +..+...... .++.+||.++ .++..++..++.+|.||. ...+-|..+++.|+|.
T Consensus 389 kd~~~~aaa~l~~~s~-srsV--~aL~tg~~~~-dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId 464 (678)
T KOG1293|consen 389 KDHDFVAAALLCLKSF-SRSV--SALRTGLKRN-DVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGID 464 (678)
T ss_pred ccHHHHHHHHHHHHHH-HHHH--HHHHcCCccc-hhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHH
Confidence 3455555555555555 3321 1455555444 5679999999 566779999999999999 4777899999999999
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHH
Q 015728 278 GLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQA 354 (401)
Q Consensus 278 ~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~ 354 (401)
.+..++. +.+..++..++++|+++.-..+...+..-....-..++-.+..+.+..++|.+...|.|+.++..+.
T Consensus 465 ~l~s~~~---~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~s 538 (678)
T KOG1293|consen 465 ILESMLT---DPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKS 538 (678)
T ss_pred HHHHHhc---CCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHH
Confidence 9999999 7888999999999999997654443332233333344444678889999999999999999886543
No 72
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=98.26 E-value=3.6e-07 Score=63.10 Aligned_cols=44 Identities=34% Similarity=0.762 Sum_probs=31.3
Q ss_pred CcccccccccccCCceEc-CccccccHHhHHHHHHc-CCCCCCCCc
Q 015728 11 HLFRCPISLDLFTDPVTL-CTGQTYDRSSIEKWLAA-GNLTCPVTM 54 (401)
Q Consensus 11 ~~~~C~iC~~~~~~Pv~~-~Cgh~fc~~Ci~~~~~~-~~~~CP~c~ 54 (401)
-.++|||++..|.+||.. .|||+|.+..|.+|+.. +...||+.+
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G 55 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG 55 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence 368999999999999985 89999999999999943 467799843
No 73
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.25 E-value=0.00012 Score=74.77 Aligned_cols=254 Identities=16% Similarity=0.221 Sum_probs=171.8
Q ss_pred HHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCc
Q 015728 98 LKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGE 177 (401)
Q Consensus 98 l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~ 177 (401)
+.+.+. +.++-.|+.|+..+.++.+.++.. +... .++.+..+|.+.+ +.++..|+. ++..+...+
T Consensus 119 v~~ll~--~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL~d~~--------~~V~~~a~~-~l~~i~~~~ 183 (526)
T PF01602_consen 119 VIKLLS--DPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLLSDKD--------PSVVSAALS-LLSEIKCND 183 (526)
T ss_dssp HHHHHH--SSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHTTHSS--------HHHHHHHHH-HHHHHHCTH
T ss_pred HHHHhc--CCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhccCCc--------chhHHHHHH-HHHHHccCc
Confidence 334444 346789999999999999887742 2223 5899999997776 458888888 888771122
Q ss_pred hhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhHHHHHHH
Q 015728 178 TESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEASDAGVRA 256 (401)
Q Consensus 178 ~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~a~~a 256 (401)
+....++ ...+..|..++...++-.+.....+|..+ ..... ..... ...++.+..+++ .+..+.-.++.+
T Consensus 184 ~~~~~~~--~~~~~~L~~~l~~~~~~~q~~il~~l~~~-~~~~~--~~~~~----~~~i~~l~~~l~s~~~~V~~e~~~~ 254 (526)
T PF01602_consen 184 DSYKSLI--PKLIRILCQLLSDPDPWLQIKILRLLRRY-APMEP--EDADK----NRIIEPLLNLLQSSSPSVVYEAIRL 254 (526)
T ss_dssp HHHTTHH--HHHHHHHHHHHTCCSHHHHHHHHHHHTTS-TSSSH--HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhH--HHHHHHhhhcccccchHHHHHHHHHHHhc-ccCCh--hhhhH----HHHHHHHHHHhhccccHHHHHHHHH
Confidence 2112222 23455555556677888898888888877 54431 22211 257788888884 456688999999
Q ss_pred HHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhH
Q 015728 257 FSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEG 336 (401)
Q Consensus 257 L~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~ 336 (401)
+..+...+. .-..++++|+++|. +.+..++-.++..|..++... ...+ . . ....+..+..+.+..+
T Consensus 255 i~~l~~~~~-----~~~~~~~~L~~lL~---s~~~nvr~~~L~~L~~l~~~~--~~~v-~--~-~~~~~~~l~~~~d~~I 320 (526)
T PF01602_consen 255 IIKLSPSPE-----LLQKAINPLIKLLS---SSDPNVRYIALDSLSQLAQSN--PPAV-F--N-QSLILFFLLYDDDPSI 320 (526)
T ss_dssp HHHHSSSHH-----HHHHHHHHHHHHHT---SSSHHHHHHHHHHHHHHCCHC--HHHH-G--T-HHHHHHHHHCSSSHHH
T ss_pred HHHhhcchH-----HHHhhHHHHHHHhh---cccchhehhHHHHHHHhhccc--chhh-h--h-hhhhhheecCCCChhH
Confidence 998887555 44558999999999 678889999999999998754 2222 1 1 2222332344677889
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHH
Q 015728 337 SENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAE 396 (401)
Q Consensus 337 ~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e 396 (401)
+..++.+|..++.. .+.. . .++.|...+...+++..++.+...+..+...++.
T Consensus 321 r~~~l~lL~~l~~~-~n~~-~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~ 373 (526)
T PF01602_consen 321 RKKALDLLYKLANE-SNVK-E-----ILDELLKYLSELSDPDFRRELIKAIGDLAEKFPP 373 (526)
T ss_dssp HHHHHHHHHHH--H-HHHH-H-----HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGS
T ss_pred HHHHHHHHhhcccc-cchh-h-----HHHHHHHHHHhccchhhhhhHHHHHHHHHhccCc
Confidence 99999999999864 2333 3 5777888885444777888888888888875554
No 74
>PF05536 Neurochondrin: Neurochondrin
Probab=98.21 E-value=0.0002 Score=72.98 Aligned_cols=237 Identities=17% Similarity=0.143 Sum_probs=154.4
Q ss_pred hHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchh---hhhhcccCCchHHHHHHhhcC-------CHHHHHHH
Q 015728 139 LPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETE---SLNLLNEESKMESFIVLFEHG-------SCSIKKRL 208 (401)
Q Consensus 139 i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~---~~~~v~~~g~i~~Lv~~L~~~-------~~~~~~~a 208 (401)
+..-+.+|++.++. -+..++. ++..+..+++. .++.|-++-+.+.+-++|+++ ....+.-|
T Consensus 7 l~~c~~lL~~~~D~--------~rfagL~-lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~La 77 (543)
T PF05536_consen 7 LEKCLSLLKSADDT--------ERFAGLL-LVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLA 77 (543)
T ss_pred HHHHHHHhccCCcH--------HHHHHHH-HHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHH
Confidence 44556777777643 3455555 66666644432 122344666677778888773 34567788
Q ss_pred HHHHHHHHhcccchhhhh--hhhccchHHHHHHHHHc-cCCc-hhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHH
Q 015728 209 CHLVEVIISSSHETKELC--CKLGKDDRLLREIISLV-HHNS-EASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYIS 284 (401)
Q Consensus 209 a~~L~~l~s~~~~~~~~~--~~i~~~~g~i~~Lv~lL-~~~~-~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~ 284 (401)
..+|..+ +.++ +.+ ..+ .+-||.|+.++ +.+. +....+..+|..++.+++.+..+++.|+|+.|.+.+.
T Consensus 78 vsvL~~f-~~~~---~~a~~~~~---~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~ 150 (543)
T PF05536_consen 78 VSVLAAF-CRDP---ELASSPQM---VSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIP 150 (543)
T ss_pred HHHHHHH-cCCh---hhhcCHHH---HHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHH
Confidence 8888888 6654 333 233 26789999999 4444 7999999999999999999999999999999999999
Q ss_pred hhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCC----cHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHH-----HH
Q 015728 285 NALTRERSLAAIAMARIEQLLAIENSKDALINNPN----GVYALVKMVFRVSDHEGSENAINSLMMICCDSLQ-----AR 355 (401)
Q Consensus 285 ~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g----~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~-----~~ 355 (401)
+ .....+.|+.+|.++........ .-.+.. .++.+-+ .+.......+-..+..|..+-...+. ..
T Consensus 151 ~----~~~~~E~Al~lL~~Lls~~~~~~-~~~~~~~l~~il~~La~-~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~ 224 (543)
T PF05536_consen 151 N----QSFQMEIALNLLLNLLSRLGQKS-WAEDSQLLHSILPSLAR-DFSSFHGEDKFELLEFLSAFLPRSPILPLESPP 224 (543)
T ss_pred h----CcchHHHHHHHHHHHHHhcchhh-hhhhHHHHHHHHHHHHH-HHHhhccchHHHHHHHHHHhcCcCCccccccCC
Confidence 3 45678899999999886433111 111222 2333333 23222224455567777666544321 11
Q ss_pred HHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHHh
Q 015728 356 EEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAEE 397 (401)
Q Consensus 356 ~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e~ 397 (401)
..-.-.....-+..+|++..++..|..|..+...+-++.+.+
T Consensus 225 ~~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~ 266 (543)
T PF05536_consen 225 SPKWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLGPE 266 (543)
T ss_pred hhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChH
Confidence 122233444556677888878899999998888888766554
No 75
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.19 E-value=0.00017 Score=73.82 Aligned_cols=256 Identities=15% Similarity=0.121 Sum_probs=158.1
Q ss_pred HHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhc
Q 015728 95 LSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLL 174 (401)
Q Consensus 95 ~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~ 174 (401)
.....+++. +.+...|+-+--.+..+...+++.-.. ++..|.+=|.+++ +.++..|+. .+.++.
T Consensus 44 ~~~vi~l~~--s~~~~~Krl~yl~l~~~~~~~~~~~~l-----~~n~l~kdl~~~n--------~~~~~lAL~-~l~~i~ 107 (526)
T PF01602_consen 44 FMEVIKLIS--SKDLELKRLGYLYLSLYLHEDPELLIL-----IINSLQKDLNSPN--------PYIRGLALR-TLSNIR 107 (526)
T ss_dssp HHHHHCTCS--SSSHHHHHHHHHHHHHHTTTSHHHHHH-----HHHHHHHHHCSSS--------HHHHHHHHH-HHHHH-
T ss_pred HHHHHHHhC--CCCHHHHHHHHHHHHHHhhcchhHHHH-----HHHHHHHhhcCCC--------HHHHHHHHh-hhhhhc
Confidence 333334344 456778888888888888777752222 3556666677665 458888999 888776
Q ss_pred CCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhHHHH
Q 015728 175 VGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEASDAG 253 (401)
Q Consensus 175 ~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~a 253 (401)
..+..+. .++.+..+|.++++.+|..|+.++.++ .... .. ..... .++.+..+|. .++.++.+|
T Consensus 108 --~~~~~~~-----l~~~v~~ll~~~~~~VRk~A~~~l~~i-~~~~-----p~-~~~~~-~~~~l~~lL~d~~~~V~~~a 172 (526)
T PF01602_consen 108 --TPEMAEP-----LIPDVIKLLSDPSPYVRKKAALALLKI-YRKD-----PD-LVEDE-LIPKLKQLLSDKDPSVVSAA 172 (526)
T ss_dssp --SHHHHHH-----HHHHHHHHHHSSSHHHHHHHHHHHHHH-HHHC-----HC-CHHGG-HHHHHHHHTTHSSHHHHHHH
T ss_pred --ccchhhH-----HHHHHHHHhcCCchHHHHHHHHHHHHH-hccC-----HH-HHHHH-HHHHHhhhccCCcchhHHHH
Confidence 2222222 478888899999999999999999999 4322 12 22222 6789999994 566799999
Q ss_pred HHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhh-ccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcC
Q 015728 254 VRAFSALCSTETNRKTLVQEGAINGLIAYISNA-LTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVS 332 (401)
Q Consensus 254 ~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~-~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~ 332 (401)
+.++..+ ..+ .+.. . ..++.++..|.+- +..++-.+...+..|..++........- ...++.+.. ++++.
T Consensus 173 ~~~l~~i-~~~-~~~~-~--~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~-~l~s~ 243 (526)
T PF01602_consen 173 LSLLSEI-KCN-DDSY-K--SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLN-LLQSS 243 (526)
T ss_dssp HHHHHHH-HCT-HHHH-T--THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHH-HHHHH
T ss_pred HHHHHHH-ccC-cchh-h--hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHH-Hhhcc
Confidence 9999999 111 1110 1 3444444444311 1566667777777777777543222210 133555565 34455
Q ss_pred ChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHHh
Q 015728 333 DHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAEE 397 (401)
Q Consensus 333 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e~ 397 (401)
++.+.-.++.++..+.... . .-..+++.|+.++.+. ++..|..+...|..+....+..
T Consensus 244 ~~~V~~e~~~~i~~l~~~~-~-----~~~~~~~~L~~lL~s~-~~nvr~~~L~~L~~l~~~~~~~ 301 (526)
T PF01602_consen 244 SPSVVYEAIRLIIKLSPSP-E-----LLQKAINPLIKLLSSS-DPNVRYIALDSLSQLAQSNPPA 301 (526)
T ss_dssp HHHHHHHHHHHHHHHSSSH-H-----HHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHCCHCHHH
T ss_pred ccHHHHHHHHHHHHhhcch-H-----HHHhhHHHHHHHhhcc-cchhehhHHHHHHHhhcccchh
Confidence 5566666777777665542 2 4455667777777654 6677777777777776655443
No 76
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.18 E-value=2e-06 Score=55.47 Aligned_cols=41 Identities=20% Similarity=0.349 Sum_probs=37.8
Q ss_pred CCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhC
Q 015728 263 TETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLA 306 (401)
Q Consensus 263 ~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~ 306 (401)
+++++..+++.|+||+|+++|. +.+.++++.|+++|.+|+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~---~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLK---SPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTT---SSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHc---CCCHHHHHHHHHHHHHHhC
Confidence 3678999999999999999999 7899999999999999974
No 77
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.18 E-value=9.2e-05 Score=71.26 Aligned_cols=271 Identities=10% Similarity=0.104 Sum_probs=172.0
Q ss_pred hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHh
Q 015728 93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKL 172 (401)
Q Consensus 93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~ 172 (401)
...+.|.+++.+.+-....+.++.+.|...... .|+..++..| +..++.+-+.... ++.+...+. ++.+
T Consensus 180 ~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a--eN~d~va~~~-~~~Il~lAK~~e~-------~e~aR~~~~-il~~ 248 (832)
T KOG3678|consen 180 GGLDLLLRMFQAPNLETSVRVEAARLLEQILVA--ENRDRVARIG-LGVILNLAKEREP-------VELARSVAG-ILEH 248 (832)
T ss_pred chHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh--hhhhHHhhcc-chhhhhhhhhcCc-------HHHHHHHHH-HHHH
Confidence 445566666666655556688888888777654 5888888766 5555555543332 567788888 8888
Q ss_pred hcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cCCchhHH
Q 015728 173 LLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-HHNSEASD 251 (401)
Q Consensus 173 l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~ 251 (401)
|-.+.++.-.-++++|++..++-.-+..++....+++.+|.|+ +... ..+.+..|++- .+-+-|..+- +.+.-.+.
T Consensus 249 mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~-~L~~-~~a~qrrmveK-r~~EWLF~LA~skDel~R~ 325 (832)
T KOG3678|consen 249 MFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNC-ALHG-GQAVQRRMVEK-RAAEWLFPLAFSKDELLRL 325 (832)
T ss_pred HhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhh-hhhc-hhHHHHHHHHh-hhhhhhhhhhcchHHHHHH
Confidence 8766665533444889999988777888899999999999999 6653 23666666653 4434555544 34444888
Q ss_pred HHHHHHHHhcCCCchhHHHHhcC---cHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHH
Q 015728 252 AGVRAFSALCSTETNRKTLVQEG---AINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMV 328 (401)
Q Consensus 252 ~a~~aL~~Ls~~~~n~~~iv~~G---~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l 328 (401)
+|.-+..-|+.+.+--..+.+.| .|+|++..+.. + .++.+.....+= +...-++.|+- |
T Consensus 326 ~AClAV~vlat~KE~E~~VrkS~TlaLVEPlva~~DP---~-------------~FARD~hd~aQG-~~~d~LqRLvP-l 387 (832)
T KOG3678|consen 326 HACLAVAVLATNKEVEREVRKSGTLALVEPLVASLDP---G-------------RFARDAHDYAQG-RGPDDLQRLVP-L 387 (832)
T ss_pred HHHHHHhhhhhhhhhhHHHhhccchhhhhhhhhccCc---c-------------hhhhhhhhhhcc-CChHHHHHhhh-h
Confidence 99999999999888776666666 45566655541 1 112221111111 23345667777 4
Q ss_pred HhcCChhHHHHHHHHHHHHhcC-C-HHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHH
Q 015728 329 FRVSDHEGSENAINSLMMICCD-S-LQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAE 396 (401)
Q Consensus 329 ~~~~~~~~~~~a~~~L~~l~~~-~-~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e 396 (401)
+.+..-+++-.++.-|+.=+.- + ..-...+-+-|+|+.|-++..+. ++..-+.|..+|+.+.+-.|-
T Consensus 388 LdS~R~EAq~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~-d~vaakfAseALtviGEEVP~ 456 (832)
T KOG3678|consen 388 LDSNRLEAQCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSP-DEVAAKFASEALTVIGEEVPY 456 (832)
T ss_pred hhcchhhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHhccccCh
Confidence 5533323333332222211100 0 11233566889999999998766 788888899999998875443
No 78
>PF05536 Neurochondrin: Neurochondrin
Probab=98.14 E-value=6.2e-05 Score=76.71 Aligned_cols=154 Identities=15% Similarity=0.152 Sum_probs=114.3
Q ss_pred chHHHHHHhhcCCHHHHHHHHHHHHHHHhcccc-hhhhhhhhccchHHHHHHHHHccC-------Cc-hhHHHHHHHHHH
Q 015728 189 KMESFIVLFEHGSCSIKKRLCHLVEVIISSSHE-TKELCCKLGKDDRLLREIISLVHH-------NS-EASDAGVRAFSA 259 (401)
Q Consensus 189 ~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~-~~~~~~~i~~~~g~i~~Lv~lL~~-------~~-~~~~~a~~aL~~ 259 (401)
.+...+.+|++.+.+.|-.+...+.++ -..++ ....++.|-++-|. .+|-++|+. +. ..+.-|+.+|..
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~-~~~~~~~~~~~~~v~~aig~-~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~ 83 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKL-LDADDEDSQTRRRVFEAIGF-KFLDRLLRTGSVPSDCPPEEYLSLAVSVLAA 83 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHc-CCCchhhHHHHHHHHHhcCh-hHHHHHhcCCCCCCCCCHHHHHHHHHHHHHH
Confidence 466667788877766666666677777 33321 12334455566674 899999932 12 377888888999
Q ss_pred hcCCCchh--HHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHH
Q 015728 260 LCSTETNR--KTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGS 337 (401)
Q Consensus 260 Ls~~~~n~--~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~ 337 (401)
+|..++.. .++++ -||.|++++.. .++..+...+..+|..++..++|+..++ +.|+|+.|.+. ... .+...
T Consensus 84 f~~~~~~a~~~~~~~--~IP~Lle~l~~--~s~~~~v~dalqcL~~Ias~~~G~~aLl-~~g~v~~L~ei-~~~-~~~~~ 156 (543)
T PF05536_consen 84 FCRDPELASSPQMVS--RIPLLLEILSS--SSDLETVDDALQCLLAIASSPEGAKALL-ESGAVPALCEI-IPN-QSFQM 156 (543)
T ss_pred HcCChhhhcCHHHHH--HHHHHHHHHHc--CCchhHHHHHHHHHHHHHcCcHhHHHHH-hcCCHHHHHHH-HHh-CcchH
Confidence 99977753 55554 79999999984 3334899999999999999999999997 88999999995 444 44789
Q ss_pred HHHHHHHHHHhcCC
Q 015728 338 ENAINSLMMICCDS 351 (401)
Q Consensus 338 ~~a~~~L~~l~~~~ 351 (401)
+.|+.+|.+++...
T Consensus 157 E~Al~lL~~Lls~~ 170 (543)
T PF05536_consen 157 EIALNLLLNLLSRL 170 (543)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988754
No 79
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=0.0006 Score=72.43 Aligned_cols=288 Identities=14% Similarity=0.115 Sum_probs=162.5
Q ss_pred hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHh-cCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHH
Q 015728 93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQ-LGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQK 171 (401)
Q Consensus 93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~-~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~ 171 (401)
+..+.|.+++...++ + .|..|++.+...+...+.++..... ...+|.++..+...... ++.+....++. .|.
T Consensus 159 ~l~~lf~q~~~d~s~-~-vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~----~d~~~a~~~l~-~l~ 231 (1075)
T KOG2171|consen 159 DLLRLFSQTMTDPSS-P-VRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQD----GDDDAAKSALE-ALI 231 (1075)
T ss_pred HHHHHHHHhccCCcc-h-HHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhc----cchHHHHHHHH-HHH
Confidence 456666677765544 3 9999999999999888755555544 45677777766433221 11234445555 444
Q ss_pred hhcCCchhh-hhhcccCCchHHHHHHhhcC--CHHHHHHHHHHHHHHHhcccc---------------------------
Q 015728 172 LLLVGETES-LNLLNEESKMESFIVLFEHG--SCSIKKRLCHLVEVIISSSHE--------------------------- 221 (401)
Q Consensus 172 ~l~~~~~~~-~~~v~~~g~i~~Lv~~L~~~--~~~~~~~aa~~L~~l~s~~~~--------------------------- 221 (401)
-+....... +..+. ..|..-+.+..+. +...|..|..+|..+ +...+
T Consensus 232 El~e~~pk~l~~~l~--~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~-~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D 308 (1075)
T KOG2171|consen 232 ELLESEPKLLRPHLS--QIIQFSLEIAKNKELENSIRHLALEFLVSL-SEYAPAMCKKLALLGHTLVPVLLAMMTEEEDD 308 (1075)
T ss_pred HHHhhchHHHHHHHH--HHHHHHHHHhhcccccHHHHHHHHHHHHHH-HHhhHHHhhhchhhhccHHHHHHHhcCCcccc
Confidence 444333221 22221 1233333333332 334555555555554 32210
Q ss_pred --------h----------------hhhhhhhccchHHHHHHHHHc-----cCCchhHHHHHHHHHHhcC-CCchhHHHH
Q 015728 222 --------T----------------KELCCKLGKDDRLLREIISLV-----HHNSEASDAGVRAFSALCS-TETNRKTLV 271 (401)
Q Consensus 222 --------~----------------~~~~~~i~~~~g~i~~Lv~lL-----~~~~~~~~~a~~aL~~Ls~-~~~n~~~iv 271 (401)
. |.....++.. -++|+++..+ +.+-.-+++|+.+|..++. +++.-....
T Consensus 309 ~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~-~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l 387 (1075)
T KOG2171|consen 309 DEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGK-QVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL 387 (1075)
T ss_pred hhhccccccccccccCcHHHHHHHHHHHHhcCChh-hehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 0 0000011100 1223333332 2344466677777666663 332222212
Q ss_pred hcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCC--HhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhc
Q 015728 272 QEGAINGLIAYISNALTRERSLAAIAMARIEQLLAI--ENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICC 349 (401)
Q Consensus 272 ~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~--~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~ 349 (401)
+ .+++.++..|. ++++.++-.|+.++..++.+ ++-.... +.-.++.|+..+-+..+++++.+|+.+|.|++.
T Consensus 388 ~-~Il~~Vl~~l~---DphprVr~AA~naigQ~stdl~p~iqk~~--~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E 461 (1075)
T KOG2171|consen 388 P-KILPIVLNGLN---DPHPRVRYAALNAIGQMSTDLQPEIQKKH--HERLPPALIALLDSTQNVRVQAHAAAALVNFSE 461 (1075)
T ss_pred H-HHHHHHHhhcC---CCCHHHHHHHHHHHHhhhhhhcHHHHHHH--HHhccHHHHHHhcccCchHHHHHHHHHHHHHHH
Confidence 1 25666666677 78999999999999999975 4433333 445677888865555677999999999999876
Q ss_pred CCHHHHHHHHHcCcHHHHHH-HhhcCCCHHHHHHHHHHHHHHHHhhHHhh
Q 015728 350 DSLQAREEAICAGVLTQLLL-LLQSQCSNRTKTKARMLLKLLRSKWAEEL 398 (401)
Q Consensus 350 ~~~~~~~~~~~~g~v~~L~~-ll~~~~~~~~~~~A~~~L~~l~~~~~e~~ 398 (401)
......-.=.--+.+.+++. |++++ ++.+|+.+..++.-.+....+.+
T Consensus 462 ~~~~~~l~pYLd~lm~~~l~~L~~~~-~~~v~e~vvtaIasvA~AA~~~F 510 (1075)
T KOG2171|consen 462 ECDKSILEPYLDGLMEKKLLLLLQSS-KPYVQEQAVTAIASVADAAQEKF 510 (1075)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHHHHhhhh
Confidence 54322212223455553444 44555 99999999999998887555544
No 80
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.14 E-value=2.7e-06 Score=76.45 Aligned_cols=67 Identities=19% Similarity=0.455 Sum_probs=56.2
Q ss_pred ccccccccccCCceEc-CccccccHHhHHHHHHcCCCCCCCCccc-CCCCCCCCcHHHHHHHHHHHHhC
Q 015728 13 FRCPISLDLFTDPVTL-CTGQTYDRSSIEKWLAAGNLTCPVTMQT-LHDPSIVPNHTLRHLINQWLQMG 79 (401)
Q Consensus 13 ~~C~iC~~~~~~Pv~~-~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~-~~~~~~~~n~~l~~~i~~~~~~~ 79 (401)
+.||+|..++++|+.+ +|+|+||..||...+-...+.||.|... +-...+.++......|+.+.+.+
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lkkq 343 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALKKQ 343 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHHHHH
Confidence 8999999999999988 7999999999999888777999999753 33446788888888888876643
No 81
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.08 E-value=0.0015 Score=62.39 Aligned_cols=279 Identities=12% Similarity=0.039 Sum_probs=183.9
Q ss_pred hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHh-c-----CChHHHHHHhccCCcccchhhhHHHHHHHH
Q 015728 93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQ-L-----GFLPLLLKQLFGKAESKFSQVYVQFVEESL 166 (401)
Q Consensus 93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~-~-----G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~ 166 (401)
+-+.++..+++-. +..+..+-.+-.+-.+.+.+...-..+.. + -.-++.+.+|...+.. +.+...
T Consensus 65 ~~v~~fi~LlS~~-~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~--------iv~~~~ 135 (442)
T KOG2759|consen 65 QYVKTFINLLSHI-DKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTF--------IVEMSF 135 (442)
T ss_pred HHHHHHHHHhchh-hhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChH--------HHHHHH
Confidence 5566677766533 44667777787888887777643332222 1 1256677777666543 566577
Q ss_pred HHHHHhhcCCchhhhhhcccCC-chHHHHHHhhc-CCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-
Q 015728 167 SCVQKLLLVGETESLNLLNEES-KMESFIVLFEH-GSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV- 243 (401)
Q Consensus 167 ~~~L~~l~~~~~~~~~~v~~~g-~i~~Lv~~L~~-~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL- 243 (401)
+ ++..++.......... +-. ....|...+++ .+.+...-++..|..+ -..+ ++|-.++.+.| +..|+..+
T Consensus 136 ~-Ils~la~~g~~~~~~~-e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~l-l~~~---eyR~~~v~adg-~~~l~~~l~ 208 (442)
T KOG2759|consen 136 R-ILSKLACFGNCKMELS-ELDVYKGFLKEQLQSSTNNDYIQFAARCLQTL-LRVD---EYRYAFVIADG-VSLLIRILA 208 (442)
T ss_pred H-HHHHHHHhccccccch-HHHHHHHHHHHHHhccCCCchHHHHHHHHHHH-hcCc---chhheeeecCc-chhhHHHHh
Confidence 7 7777763322111000 111 13344455665 4567778888889888 6665 89999998755 58888888
Q ss_pred c--CCchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHh-------hHHHH
Q 015728 244 H--HNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIEN-------SKDAL 314 (401)
Q Consensus 244 ~--~~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~-------~~~~~ 314 (401)
+ .+-+++-+..-++|-|+.++.-...+-.-+.|+.|++++++ +..+.+....++++.|+...+. ...++
T Consensus 209 s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~--~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~m 286 (442)
T KOG2759|consen 209 STKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKE--STKEKVTRIVLAIFRNLLDKGPDRETKKDIASQM 286 (442)
T ss_pred ccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHH
Confidence 3 35679999999999999999988888778999999999996 5667788889999999997652 22344
Q ss_pred HhCCCcHHHHHHHHHh----------------------------------------------------------------
Q 015728 315 INNPNGVYALVKMVFR---------------------------------------------------------------- 330 (401)
Q Consensus 315 ~~~~g~i~~Lv~~l~~---------------------------------------------------------------- 330 (401)
+ .. .++.-++.|..
T Consensus 287 v-~~-~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnenn 364 (442)
T KOG2759|consen 287 V-LC-KVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENN 364 (442)
T ss_pred H-hc-CchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhcc
Confidence 3 32 33333332211
Q ss_pred -------------cCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728 331 -------------VSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS 392 (401)
Q Consensus 331 -------------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~ 392 (401)
+.+|..-..|..=+.....+.++.+..+.+-||=+.++.||.++ ++.+|..|..+++.|--
T Consensus 365 yellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~-d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 365 YELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHE-DPEVRYHALLAVQKLMV 438 (442)
T ss_pred HHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCC-CchHHHHHHHHHHHHHh
Confidence 11122222222222223333467777888999999999999998 99999999998887643
No 82
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=2.8e-06 Score=81.88 Aligned_cols=72 Identities=21% Similarity=0.378 Sum_probs=55.6
Q ss_pred cCCCCCCcccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCC-----CCCCcHHHHHHHHHHHH
Q 015728 5 RQMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDP-----SIVPNHTLRHLINQWLQ 77 (401)
Q Consensus 5 ~~~~~~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~-----~~~~n~~l~~~i~~~~~ 77 (401)
.+..+..+|.|.||...+..|++++|||+||..|+.+... ....||.|+..+... ....|+....++..|+.
T Consensus 77 ~~~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld-~~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~ 153 (398)
T KOG4159|consen 77 GPEEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLD-QETECPLCRDELVELPALEQALSLNRLLCKLITKFLE 153 (398)
T ss_pred cCccccchhhhhhhHhhcCCCccccccccccHHHHHHHhc-cCCCCcccccccccchHHHHHHHHHHHHHHHHHHhhh
Confidence 3445678999999999999999999999999999999766 567799999887642 11135555566666554
No 83
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=98.04 E-value=2e-06 Score=72.69 Aligned_cols=59 Identities=15% Similarity=0.205 Sum_probs=46.2
Q ss_pred cccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCCcHHHHHHH
Q 015728 12 LFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLRHLI 72 (401)
Q Consensus 12 ~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~n~~l~~~i 72 (401)
.|.|.||...+..||.+.|||.||..|..+-+. ....|-+|++...- .+.....++.|+
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~-kg~~C~~Cgk~t~G-~f~V~~d~~kmL 254 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQ-KGDECGVCGKATYG-RFWVVSDLQKML 254 (259)
T ss_pred ceeehhchhhccchhhhhcchhHHHHHHHHHhc-cCCcceecchhhcc-ceeHHhhHHHHH
Confidence 489999999999999999999999999988777 45679999886543 233344455553
No 84
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.03 E-value=4.8e-06 Score=60.98 Aligned_cols=40 Identities=30% Similarity=0.647 Sum_probs=31.6
Q ss_pred cccccccccCC------------ceE-cCccccccHHhHHHHHHcCCCCCCCCc
Q 015728 14 RCPISLDLFTD------------PVT-LCTGQTYDRSSIEKWLAAGNLTCPVTM 54 (401)
Q Consensus 14 ~C~iC~~~~~~------------Pv~-~~Cgh~fc~~Ci~~~~~~~~~~CP~c~ 54 (401)
.|+||++.|.+ |+. .+|||.|...||.+|+. ...+||.||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~-~~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLK-QNNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHT-TSSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHh-cCCcCCCCC
Confidence 39999999833 333 47999999999999998 555999996
No 85
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.01 E-value=4.8e-05 Score=61.33 Aligned_cols=129 Identities=16% Similarity=0.169 Sum_probs=102.7
Q ss_pred CchHHHHHHhhc-CCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhHHHHHHHHHHhcCCCc
Q 015728 188 SKMESFIVLFEH-GSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEASDAGVRAFSALCSTET 265 (401)
Q Consensus 188 g~i~~Lv~~L~~-~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~a~~aL~~Ls~~~~ 265 (401)
+.+..||.-.+. .+.+.|+....=|.|+ +.+. .|-..+... .++...|+-|. .+...++.+...|+|+|.++.
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANF-AYDP---~Nys~Lrql-~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~ 90 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANF-AYDP---INYSHLRQL-DVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKT 90 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhh-ccCc---chHHHHHHh-hHHHHHHHHhhcccHHHHHHhHHHHHhhccChH
Confidence 456677765544 5788999988889999 8886 666666664 78899999885 566699999999999999999
Q ss_pred hhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHh-hHHHHHhCCCcHHHHHHHHH
Q 015728 266 NRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIEN-SKDALINNPNGVYALVKMVF 329 (401)
Q Consensus 266 n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~-~~~~~~~~~g~i~~Lv~~l~ 329 (401)
|.+-|+++|++|.++..++ ++.+.+...|+.+|..|+..+. .|..+. -|.+|+.+.
T Consensus 91 n~~~I~ea~g~plii~~ls---sp~e~tv~sa~~~l~~l~~~~Rt~r~ell-----~p~Vv~~v~ 147 (173)
T KOG4646|consen 91 NAKFIREALGLPLIIFVLS---SPPEITVHSAALFLQLLEFGERTERDELL-----SPAVVRTVQ 147 (173)
T ss_pred HHHHHHHhcCCceEEeecC---CChHHHHHHHHHHHHHhcCcccchhHHhc-----cHHHHHHHH
Confidence 9999999999999999999 6788889999999999986543 445553 345555443
No 86
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.00 E-value=5.5e-06 Score=53.41 Aligned_cols=40 Identities=23% Similarity=0.265 Sum_probs=35.7
Q ss_pred CchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhc
Q 015728 126 SPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLL 174 (401)
Q Consensus 126 ~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~ 174 (401)
++++++.+++.|+||.|+.+|++++ .+++++|++ +|+||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~--------~~v~~~a~~-al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPD--------PEVQEEAAW-ALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSS--------HHHHHHHHH-HHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCC--------HHHHHHHHH-HHHHHh
Confidence 4678999999999999999999776 559999999 999886
No 87
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.93 E-value=0.0032 Score=61.19 Aligned_cols=268 Identities=15% Similarity=0.134 Sum_probs=184.7
Q ss_pred cChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhccc
Q 015728 107 ATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNE 186 (401)
Q Consensus 107 ~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~ 186 (401)
++.+.+..+.+.+|.+..+.+ .-+.+.+.+.=-.++.-|...... ..=+++|+. +.+.+..-+.+.+ .+ -
T Consensus 37 ~~~~vraa~yRilRy~i~d~~-~l~~~~~l~id~~ii~SL~~~~~~------~~ER~QALk-liR~~l~~~~~~~-~~-~ 106 (371)
T PF14664_consen 37 DSKEVRAAGYRILRYLISDEE-SLQILLKLHIDIFIIRSLDRDNKN------DVEREQALK-LIRAFLEIKKGPK-EI-P 106 (371)
T ss_pred CcHHHHHHHHHHHHHHHcCHH-HHHHHHHcCCchhhHhhhcccCCC------hHHHHHHHH-HHHHHHHhcCCcc-cC-C
Confidence 447788888888888887665 566666777666666666544432 234678888 6665553322222 23 4
Q ss_pred CCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cCCchhHHHHHHHHHHhcCCCc
Q 015728 187 ESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-HHNSEASDAGVRAFSALCSTET 265 (401)
Q Consensus 187 ~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~a~~aL~~Ls~~~~ 265 (401)
.|.+..++.+....+...+..+..+|..+ +..+ -+.+..+ |++..|+..+ ++..+.....+.++..+-.++.
T Consensus 107 ~~vvralvaiae~~~D~lr~~cletL~El-~l~~-----P~lv~~~-gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~ 179 (371)
T PF14664_consen 107 RGVVRALVAIAEHEDDRLRRICLETLCEL-ALLN-----PELVAEC-GGIRVLLRALIDGSFSISESLLDTLLYLLDSPR 179 (371)
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHH-HhhC-----HHHHHHc-CCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcc
Confidence 57799999999998889999999999999 7654 3444455 6679999988 5555688889999999999999
Q ss_pred hhHHHHhcCcHHHHHHHHHhh----ccccc--hHHHHHHHHHHHHhCCHhhHHHHHhCC-CcHHHHHHHHHhcCChhHHH
Q 015728 266 NRKTLVQEGAINGLIAYISNA----LTRER--SLAAIAMARIEQLLAIENSKDALINNP-NGVYALVKMVFRVSDHEGSE 338 (401)
Q Consensus 266 n~~~iv~~G~v~~Lv~lL~~~----~~~~~--~~~~~a~~~L~~La~~~~~~~~~~~~~-g~i~~Lv~~l~~~~~~~~~~ 338 (401)
.|..+...=-++.++.-+.+. ..++. +....+..++..+-+++.|-..+..+. .++..||. .+...+++.++
T Consensus 180 tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~-~L~~p~~~ir~ 258 (371)
T PF14664_consen 180 TRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVD-SLRLPNPEIRK 258 (371)
T ss_pred hhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHH-HHcCCCHHHHH
Confidence 888776533455555555421 01222 345566677777777777777665343 68999999 56666767888
Q ss_pred HHHHHHHHHhcCC-----------------H-----------------------------------HHHHHHHHcCcHHH
Q 015728 339 NAINSLMMICCDS-----------------L-----------------------------------QAREEAICAGVLTQ 366 (401)
Q Consensus 339 ~a~~~L~~l~~~~-----------------~-----------------------------------~~~~~~~~~g~v~~ 366 (401)
..+.+|..+-.-. . -....++++|.++.
T Consensus 259 ~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~~ 338 (371)
T PF14664_consen 259 AILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIEAGLLEA 338 (371)
T ss_pred HHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHHcChHHH
Confidence 8888876651000 0 01235678999999
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728 367 LLLLLQSQCSNRTKTKARMLLKLLRS 392 (401)
Q Consensus 367 L~~ll~~~~~~~~~~~A~~~L~~l~~ 392 (401)
|+++..+..++....+|.-+|..+-+
T Consensus 339 L~~li~~~~d~~l~~KAtlLL~elL~ 364 (371)
T PF14664_consen 339 LVELIESSEDSSLSRKATLLLGELLH 364 (371)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 99999887678899999988887655
No 88
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.89 E-value=8.8e-06 Score=79.46 Aligned_cols=69 Identities=23% Similarity=0.449 Sum_probs=54.3
Q ss_pred CCCCCcccccccccccCCceEc-CccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCC-cHHHHHHHHHHH
Q 015728 7 MTIPHLFRCPISLDLFTDPVTL-CTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVP-NHTLRHLINQWL 76 (401)
Q Consensus 7 ~~~~~~~~C~iC~~~~~~Pv~~-~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~-n~~l~~~i~~~~ 76 (401)
.++.+++.||+|..++.+|+.+ .|||.||..|+..|... +..||.|+.........+ ....+..+..+.
T Consensus 16 ~~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (391)
T KOG0297|consen 16 RPLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEELPVPRALRRELLKLP 86 (391)
T ss_pred CCCcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhccCchHHHHHHHHhcc
Confidence 3467789999999999999995 99999999999999985 888999988876553333 444555555443
No 89
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.87 E-value=0.0034 Score=66.90 Aligned_cols=263 Identities=12% Similarity=0.083 Sum_probs=155.2
Q ss_pred hhcChHHHHHHHHHHHHHHhcCchhhhHHHh--cCChHHHHHHhccCCcc----cchh---hh-HHHHHHHHHHHHHhhc
Q 015728 105 HEATLETKLQIVQKIHVVLRESPPASNCLIQ--LGFLPLLLKQLFGKAES----KFSQ---VY-VQFVEESLSCVQKLLL 174 (401)
Q Consensus 105 ~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~--~G~i~~Lv~lL~s~~~~----~~~~---~~-~~~~~~a~~~~L~~l~ 174 (401)
.+-+...|..|+..|.-+++.-+.-.+.... .-.++.++.+....... ..+. ++ ..-...|.. ++-.++
T Consensus 259 ~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~-~lDrlA 337 (1075)
T KOG2171|consen 259 KELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQ-ALDRLA 337 (1075)
T ss_pred ccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHH-HHHHHH
Confidence 3346678889999999998885543333322 22455555554322211 0001 01 111222333 444455
Q ss_pred CCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhHHHH
Q 015728 175 VGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEASDAG 253 (401)
Q Consensus 175 ~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~a 253 (401)
.+=..+ .++ +-.++.+-.+|++.+...|..+..+|..+ +... .+..++.-..+++..+..|. .++.++.+|
T Consensus 338 ~~L~g~-~v~--p~~~~~l~~~l~S~~w~~R~AaL~Als~i-~EGc----~~~m~~~l~~Il~~Vl~~l~DphprVr~AA 409 (1075)
T KOG2171|consen 338 LHLGGK-QVL--PPLFEALEAMLQSTEWKERHAALLALSVI-AEGC----SDVMIGNLPKILPIVLNGLNDPHPRVRYAA 409 (1075)
T ss_pred hcCChh-heh--HHHHHHHHHHhcCCCHHHHHHHHHHHHHH-Hccc----HHHHHHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 433222 122 23466666788899999999888888777 4321 12222222234555555553 456799999
Q ss_pred HHHHHHhcCCCc-hhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcC
Q 015728 254 VRAFSALCSTET-NRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVS 332 (401)
Q Consensus 254 ~~aL~~Ls~~~~-n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~ 332 (401)
..|+..++.+=. .-.+--..-.+|.|+..+.+ ..+..++.+|+.+|-+++..-.+-..----.+.+..++.++..++
T Consensus 410 ~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~--~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~ 487 (1075)
T KOG2171|consen 410 LNAIGQMSTDLQPEIQKKHHERLPPALIALLDS--TQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSS 487 (1075)
T ss_pred HHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcc--cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999996433 33333344477789999985 567789999999999888643222211101234444555566778
Q ss_pred ChhHHHHHHHHHHHHhcCCHHHHHHHH--HcCcHHHHHHHhhcCCCHHHHH
Q 015728 333 DHEGSENAINSLMMICCDSLQAREEAI--CAGVLTQLLLLLQSQCSNRTKT 381 (401)
Q Consensus 333 ~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~g~v~~L~~ll~~~~~~~~~~ 381 (401)
.+.+++.++.++..++...+ ..++ =.-.+|.|..+|+......-|+
T Consensus 488 ~~~v~e~vvtaIasvA~AA~---~~F~pY~d~~Mp~L~~~L~n~~~~d~r~ 535 (1075)
T KOG2171|consen 488 KPYVQEQAVTAIASVADAAQ---EKFIPYFDRLMPLLKNFLQNADDKDLRE 535 (1075)
T ss_pred chhHHHHHHHHHHHHHHHHh---hhhHhHHHHHHHHHHHHHhCCCchhhHH
Confidence 88999999999999886532 2222 2446788888888774343333
No 90
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=6.9e-06 Score=74.19 Aligned_cols=64 Identities=22% Similarity=0.200 Sum_probs=48.4
Q ss_pred cccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCCcHHHHHHHHHHHH
Q 015728 12 LFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLRHLINQWLQ 77 (401)
Q Consensus 12 ~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~n~~l~~~i~~~~~ 77 (401)
.|.|-||.+.|.+||.+.|||+||..|-...+. ....|++|.+.+.. .+.+...|...+..-++
T Consensus 241 Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~q-k~~~c~vC~~~t~g-~~~~akeL~~~L~~kks 304 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQ-KGEKCYVCSQQTHG-SFNVAKELLVSLKLKKS 304 (313)
T ss_pred CccccccccccccchhhcCCceeehhhhccccc-cCCcceeccccccc-ccchHHHHHHHHHhhhh
Confidence 478999999999999999999999999988777 45679999887643 34444445444444333
No 91
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.85 E-value=0.0003 Score=63.77 Aligned_cols=192 Identities=13% Similarity=0.118 Sum_probs=111.7
Q ss_pred hcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccc-hHHHHHHHHHcc-CCchhHHHHHHHHHHhcCCCchhHHHHhcCc
Q 015728 198 EHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKD-DRLLREIISLVH-HNSEASDAGVRAFSALCSTETNRKTLVQEGA 275 (401)
Q Consensus 198 ~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~-~g~i~~Lv~lL~-~~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~ 275 (401)
.+.+.+.|..|..-|..++... ...+....+... ..++..++..+. ....+.+.|..++..|+..-.+.-.-.-...
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~-~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~ 95 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGN-APEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADIL 95 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH--B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcC-CccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence 4567788888888888883322 111222222210 122345555553 3456899999999999965444333223448
Q ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHH
Q 015728 276 INGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAR 355 (401)
Q Consensus 276 v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~ 355 (401)
+|+|++.+. ++...+++.|..+|..+...-.....+. ++.+.. ...+.++.++..++..|..+....+...
T Consensus 96 l~~Ll~~~~---~~~~~i~~~a~~~L~~i~~~~~~~~~~~-----~~~l~~-~~~~Kn~~vR~~~~~~l~~~l~~~~~~~ 166 (228)
T PF12348_consen 96 LPPLLKKLG---DSKKFIREAANNALDAIIESCSYSPKIL-----LEILSQ-GLKSKNPQVREECAEWLAIILEKWGSDS 166 (228)
T ss_dssp HHHHHHGGG------HHHHHHHHHHHHHHHTTS-H--HHH-----HHHHHH-HTT-S-HHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHc---cccHHHHHHHHHHHHHHHHHCCcHHHHH-----HHHHHH-HHhCCCHHHHHHHHHHHHHHHHHccchH
Confidence 899999998 5677889999999999987533111111 223344 5677788899999999988766543111
Q ss_pred HHHHH----cCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHHhhcc
Q 015728 356 EEAIC----AGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAEELKH 400 (401)
Q Consensus 356 ~~~~~----~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e~~~~ 400 (401)
..+-. ...++.+...+.++ ++.+|+.|...+..+.++||+-.+.
T Consensus 167 ~~l~~~~~~~~l~~~l~~~l~D~-~~~VR~~Ar~~~~~l~~~~~~~a~~ 214 (228)
T PF12348_consen 167 SVLQKSAFLKQLVKALVKLLSDA-DPEVREAARECLWALYSHFPERAES 214 (228)
T ss_dssp GGG--HHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHHHHH-HHH--
T ss_pred hhhcccchHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHCCHhhcc
Confidence 12222 34667777778777 9999999999999999999987643
No 92
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.85 E-value=0.0066 Score=55.96 Aligned_cols=275 Identities=14% Similarity=0.156 Sum_probs=173.4
Q ss_pred HHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHH-hcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhh
Q 015728 95 LSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLI-QLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLL 173 (401)
Q Consensus 95 ~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~-~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l 173 (401)
...+.++|.+. ++..|..|+.-+..+... ..+.... +.-.++.+.+++....+ .+.|+. +|.|+
T Consensus 5 l~elv~ll~~~--sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~----------~~~a~~-alVnl 69 (353)
T KOG2973|consen 5 LVELVELLHSL--SPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP----------AEPAAT-ALVNL 69 (353)
T ss_pred HHHHHHHhccC--ChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc----------ccHHHH-HHHHH
Confidence 34455666533 567888888888888876 2332222 24468889999877653 456777 88888
Q ss_pred cCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhcc-----chHHHHHHHHHccCC--
Q 015728 174 LVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGK-----DDRLLREIISLVHHN-- 246 (401)
Q Consensus 174 ~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~-----~~g~i~~Lv~lL~~~-- 246 (401)
+.+.. .++++... .+..+++.+..+....-...+.+|.|+ +.+++ .....+.. ..|.+...+...+.+
T Consensus 70 sq~~~-l~~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NL-s~~~~--~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n 144 (353)
T KOG2973|consen 70 SQKEE-LRKKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNL-SRDDD--EVAALLTNLTEKKDSGLMRLARAFCDKSYN 144 (353)
T ss_pred HhhHH-HHHHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHh-ccCch--HHHHHHHhcccccccchHHHHHHHhCcccc
Confidence 85543 34444333 788888888776555555667799999 77652 22221111 124433333344322
Q ss_pred -chhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchH-HHHHHHHHHHHhCCHhhHHHHHhCCCcHHHH
Q 015728 247 -SEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSL-AAIAMARIEQLLAIENSKDALINNPNGVYAL 324 (401)
Q Consensus 247 -~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~-~~~a~~~L~~La~~~~~~~~~~~~~g~i~~L 324 (401)
..-..+.+.++.||++.+..|..+.+...+|.-.-+-.+ +.+..+ +..-+++|.|.|-+......+. + ..+..|
T Consensus 145 ~~a~f~ylA~vf~nls~~~~gR~l~~~~k~~p~~kll~ft--~~~s~vRr~GvagtlkN~cFd~~~h~~lL-~-e~~~lL 220 (353)
T KOG2973|consen 145 AYAEFHYLAPVFANLSQFEAGRKLLLEPKRFPDQKLLPFT--SEDSQVRRGGVAGTLKNCCFDAKLHEVLL-D-ESINLL 220 (353)
T ss_pred cccchhHHHHHHHHHhhhhhhhhHhcchhhhhHhhhhccc--ccchhhhccchHHHHHhhhccchhHHHHh-c-chHHHH
Confidence 236678888999999999999999887744432222221 212223 3457889999998888887776 3 334444
Q ss_pred HHHHH----------------------------hcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCC
Q 015728 325 VKMVF----------------------------RVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCS 376 (401)
Q Consensus 325 v~~l~----------------------------~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~ 376 (401)
..+++ +..++.++..-+.+|..||.. ...|+.+.+.|+-+.|-.+-.-..+
T Consensus 221 p~iLlPlagpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT-~~GRe~lR~kgvYpilRElhk~e~d 299 (353)
T KOG2973|consen 221 PAILLPLAGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCAT-RAGREVLRSKGVYPILRELHKWEED 299 (353)
T ss_pred HHHHhhcCCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhh-hHhHHHHHhcCchHHHHHHhcCCCc
Confidence 44221 135677888999999999976 5678666666666665555443346
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 015728 377 NRTKTKARMLLKLLRSKW 394 (401)
Q Consensus 377 ~~~~~~A~~~L~~l~~~~ 394 (401)
+..++..-.+..++.+..
T Consensus 300 ed~~~ace~vvq~Lv~~e 317 (353)
T KOG2973|consen 300 EDIREACEQVVQMLVRLE 317 (353)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 778888888888887733
No 93
>PTZ00429 beta-adaptin; Provisional
Probab=97.79 E-value=0.011 Score=62.45 Aligned_cols=212 Identities=9% Similarity=0.050 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHH
Q 015728 159 VQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLRE 238 (401)
Q Consensus 159 ~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~ 238 (401)
+.++-.|+. .|..+.. .+..+ -.++++.+.|.+.++-+|..|+.++.++ -..+ ...+.. .|.++.
T Consensus 119 p~IRaLALR-tLs~Ir~--~~i~e-----~l~~~lkk~L~D~~pYVRKtAalai~Kl-y~~~-----pelv~~-~~~~~~ 183 (746)
T PTZ00429 119 PVVRALAVR-TMMCIRV--SSVLE-----YTLEPLRRAVADPDPYVRKTAAMGLGKL-FHDD-----MQLFYQ-QDFKKD 183 (746)
T ss_pred HHHHHHHHH-HHHcCCc--HHHHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHH-HhhC-----cccccc-cchHHH
Confidence 446766666 5555432 11221 2356667777788888999999888888 4322 122223 478888
Q ss_pred HHHHc-cCCchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhC
Q 015728 239 IISLV-HHNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINN 317 (401)
Q Consensus 239 Lv~lL-~~~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~ 317 (401)
|..+| +.++.++.+|+.+|..+......+.. ...+.+..|+..|. .-++-.+-..+.+|.... +......
T Consensus 184 L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~-l~~~~~~~Ll~~L~---e~~EW~Qi~IL~lL~~y~--P~~~~e~--- 254 (746)
T PTZ00429 184 LVELLNDNNPVVASNAAAIVCEVNDYGSEKIE-SSNEWVNRLVYHLP---ECNEWGQLYILELLAAQR--PSDKESA--- 254 (746)
T ss_pred HHHHhcCCCccHHHHHHHHHHHHHHhCchhhH-HHHHHHHHHHHHhh---cCChHHHHHHHHHHHhcC--CCCcHHH---
Confidence 88888 45677899999999998754333221 23445556666665 344445555555554322 2111111
Q ss_pred CCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCC-HHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHH
Q 015728 318 PNGVYALVKMVFRVSDHEGSENAINSLMMICCDS-LQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAE 396 (401)
Q Consensus 318 ~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e 396 (401)
...+..+.. .+++.++.+.-.|++++.++.... ++....+ -.....+|+.|+ ++ ++++|..+..-+..+....|+
T Consensus 255 ~~il~~l~~-~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~-~~rl~~pLv~L~-ss-~~eiqyvaLr~I~~i~~~~P~ 330 (746)
T PTZ00429 255 ETLLTRVLP-RMSHQNPAVVMGAIKVVANLASRCSQELIERC-TVRVNTALLTLS-RR-DAETQYIVCKNIHALLVIFPN 330 (746)
T ss_pred HHHHHHHHH-HhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHH-HHHHHHHHHHhh-CC-CccHHHHHHHHHHHHHHHCHH
Confidence 123455555 355677788889999999987652 2322221 122336677774 44 778999999888888887776
Q ss_pred hh
Q 015728 397 EL 398 (401)
Q Consensus 397 ~~ 398 (401)
-+
T Consensus 331 lf 332 (746)
T PTZ00429 331 LL 332 (746)
T ss_pred HH
Confidence 44
No 94
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.77 E-value=0.007 Score=60.51 Aligned_cols=274 Identities=14% Similarity=0.064 Sum_probs=171.1
Q ss_pred HHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCC--cccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCCchHHH
Q 015728 116 VQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKA--ESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKMESF 193 (401)
Q Consensus 116 ~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~--~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~L 193 (401)
+..|+.+.++.. +...+....++..|.++-.=.. ...+...+..+..+|+. .|.|+-..+...++...+.|..+.+
T Consensus 2 L~~LRiLsRd~~-~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALK-CL~N~lf~s~~aR~~~~~~~~~~~l 79 (446)
T PF10165_consen 2 LETLRILSRDPT-GLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALK-CLCNALFLSPSARQIFVDLGLAEKL 79 (446)
T ss_pred HHHHHHHccCcc-cchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHH-HHHHHHhCCHHHHHHHHHcCcHHHH
Confidence 456666665543 6666666666777777651000 00001124678999999 6666666777778888799999999
Q ss_pred HHHhhcC-----CHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc----cC--------------CchhH
Q 015728 194 IVLFEHG-----SCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV----HH--------------NSEAS 250 (401)
Q Consensus 194 v~~L~~~-----~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL----~~--------------~~~~~ 250 (401)
+..|+.. +.+..--..++|+-+++... +.+..+....+++..++..| .. +..+.
T Consensus 80 ~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~---~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l 156 (446)
T PF10165_consen 80 CERLKNYSDSSQPSDVEFLDSRLLFLLTALRP---DDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEAL 156 (446)
T ss_pred HHHHHcccccCCChhHHHHHHHHHHHHhcCCh---hHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHH
Confidence 9999876 67788888889988844444 56666655546667666655 10 11267
Q ss_pred HHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhh---c---cccchHHHHHHHHHHHHhCCH-hh-------HHHH--
Q 015728 251 DAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNA---L---TRERSLAAIAMARIEQLLAIE-NS-------KDAL-- 314 (401)
Q Consensus 251 ~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~---~---~~~~~~~~~a~~~L~~La~~~-~~-------~~~~-- 314 (401)
..+++.++|+.........--+.+.++.|+.+|... . .+.......++.+|.++-... +. ...+
T Consensus 157 ~EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~ 236 (446)
T PF10165_consen 157 SEILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFP 236 (446)
T ss_pred HHHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccC
Confidence 788999999985444332223456778877777532 1 122355667777777773211 11 0000
Q ss_pred -HhCCCcHHHHHHHHHhc----CCh---hHHHHHHHHHHHHhcCCHHHHHHHHH----------------cCcHHHHHHH
Q 015728 315 -INNPNGVYALVKMVFRV----SDH---EGSENAINSLMMICCDSLQAREEAIC----------------AGVLTQLLLL 370 (401)
Q Consensus 315 -~~~~g~i~~Lv~~l~~~----~~~---~~~~~a~~~L~~l~~~~~~~~~~~~~----------------~g~v~~L~~l 370 (401)
..+...|..|++.|-+. ... ..-..-+.+|..++..++..|+-+.. ...-..|+.+
T Consensus 237 ~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrL 316 (446)
T PF10165_consen 237 EGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRL 316 (446)
T ss_pred CCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHH
Confidence 12334677777743211 111 23344677778888777666655543 2344679999
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHhhH
Q 015728 371 LQSQCSNRTKTKARMLLKLLRSKWA 395 (401)
Q Consensus 371 l~~~~~~~~~~~A~~~L~~l~~~~~ 395 (401)
|.+. .+..|..++.+|..|++--+
T Consensus 317 mt~~-~~~~k~~vaellf~Lc~~d~ 340 (446)
T PF10165_consen 317 MTSP-DPQLKDAVAELLFVLCKEDA 340 (446)
T ss_pred hCCC-CchHHHHHHHHHHHHHhhhH
Confidence 9888 59999999999999987443
No 95
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.76 E-value=0.005 Score=60.57 Aligned_cols=29 Identities=10% Similarity=-0.013 Sum_probs=21.8
Q ss_pred cCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728 361 AGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS 392 (401)
Q Consensus 361 ~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~ 392 (401)
..+++.|+..|... ..++.|...++.+..
T Consensus 268 p~av~~L~~~l~d~---~~aR~A~eA~~~ItG 296 (410)
T TIGR02270 268 VEAAPWCLEAMREP---PWARLAGEAFSLITG 296 (410)
T ss_pred cchHHHHHHHhcCc---HHHHHHHHHHHHhhC
Confidence 34678888887554 588888888888765
No 96
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.69 E-value=0.0015 Score=60.11 Aligned_cols=190 Identities=16% Similarity=0.162 Sum_probs=129.6
Q ss_pred hHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHccCCchhHHHHHHHHHHhcCCCchhHH
Q 015728 190 MESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHHNSEASDAGVRAFSALCSTETNRKT 269 (401)
Q Consensus 190 i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~a~~aL~~Ls~~~~n~~~ 269 (401)
.-.++.+|.+.++.+|..|..-+..+ ... ..+.....+.-.++.+..++....+ .+.|+.+|.|++..+.-++.
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~l-t~~----~~~~~~~~~~~~lk~l~qL~~~~~~-~~~a~~alVnlsq~~~l~~~ 78 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGL-TGR----GLQSLSKYSEALLKDLTQLLKDLDP-AEPAATALVNLSQKEELRKK 78 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhc-ccc----chhhhccchhhhHHHHHHHccCccc-ccHHHHHHHHHHhhHHHHHH
Confidence 34578889999999999988888777 332 1222222233567888888854433 78899999999999999999
Q ss_pred HHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHH-hCC----CcHHHHHHHHHhcCCh--hHHHHHHH
Q 015728 270 LVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALI-NNP----NGVYALVKMVFRVSDH--EGSENAIN 342 (401)
Q Consensus 270 iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~-~~~----g~i~~Lv~~l~~~~~~--~~~~~a~~ 342 (401)
+.+. .+..++..+. ++...+...++.+|.||++.+.....+. ... .++..++....+.+-. ..-.+-+.
T Consensus 79 ll~~-~~k~l~~~~~---~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~ 154 (353)
T KOG2973|consen 79 LLQD-LLKVLMDMLT---DPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAP 154 (353)
T ss_pred HHHH-HHHHHHHHhc---CcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHH
Confidence 9887 7777777777 4556788999999999998776554442 222 4566666655544432 34556788
Q ss_pred HHHHHhcCCHHHHHHHHHcCcH--HHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 015728 343 SLMMICCDSLQAREEAICAGVL--TQLLLLLQSQCSNRTKTKARMLLKLLR 391 (401)
Q Consensus 343 ~L~~l~~~~~~~~~~~~~~g~v--~~L~~ll~~~~~~~~~~~A~~~L~~l~ 391 (401)
++.+|++. ...|.-+.....+ +.|+.+-+.+ +..-|...+++|+.++
T Consensus 155 vf~nls~~-~~gR~l~~~~k~~p~~kll~ft~~~-s~vRr~GvagtlkN~c 203 (353)
T KOG2973|consen 155 VFANLSQF-EAGRKLLLEPKRFPDQKLLPFTSED-SQVRRGGVAGTLKNCC 203 (353)
T ss_pred HHHHHhhh-hhhhhHhcchhhhhHhhhhcccccc-hhhhccchHHHHHhhh
Confidence 88999876 4556555544433 3455554423 5666777788887743
No 97
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.66 E-value=0.00026 Score=53.63 Aligned_cols=86 Identities=13% Similarity=0.264 Sum_probs=66.8
Q ss_pred hHHHHHHh-hcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhHHHHHHHHHHhcCCCchh
Q 015728 190 MESFIVLF-EHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEASDAGVRAFSALCSTETNR 267 (401)
Q Consensus 190 i~~Lv~~L-~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~a~~aL~~Ls~~~~n~ 267 (401)
|+.|++.| ++++..+|..++.+|..+ . . ..+++.|+.+++ +++.++..|+.+|..+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~-~-------------~-~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~------ 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL-G-------------D-PEAIPALIELLKDEDPMVRRAAARALGRIG------ 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC-T-------------H-HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc-C-------------C-HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC------
Confidence 67899988 778899999988888655 2 1 256899999994 56779999999999872
Q ss_pred HHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHH
Q 015728 268 KTLVQEGAINGLIAYISNALTRERSLAAIAMARIE 302 (401)
Q Consensus 268 ~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~ 302 (401)
+..+++.|.+++.+ +.+..++..|+.+|.
T Consensus 60 ----~~~~~~~L~~~l~~--~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 ----DPEAIPALIKLLQD--DDDEVVREAAAEALG 88 (88)
T ss_dssp ----HHHTHHHHHHHHTC---SSHHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHcC--CCcHHHHHHHHhhcC
Confidence 34599999999984 445556888888774
No 98
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=3e-05 Score=72.05 Aligned_cols=48 Identities=23% Similarity=0.478 Sum_probs=40.5
Q ss_pred CCccccccccccc-CC------------ceEcCccccccHHhHHHHHHcCCCCCCCCcccCC
Q 015728 10 PHLFRCPISLDLF-TD------------PVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLH 58 (401)
Q Consensus 10 ~~~~~C~iC~~~~-~~------------Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~ 58 (401)
.++-.|.||++-| .. |..++|||.+...|+..|.. +..+||.||.++.
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~E-RqQTCPICr~p~i 345 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLE-RQQTCPICRRPVI 345 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHH-hccCCCcccCccc
Confidence 3578999999974 33 36799999999999999998 7889999999853
No 99
>PTZ00429 beta-adaptin; Provisional
Probab=97.65 E-value=0.017 Score=61.10 Aligned_cols=212 Identities=13% Similarity=0.055 Sum_probs=135.6
Q ss_pred hHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhh
Q 015728 94 SLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLL 173 (401)
Q Consensus 94 ~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l 173 (401)
..+.+.+.|.+. +...+++|++++-..+...... ..+.+..++++.+.+- +++.-..- .+.++
T Consensus 33 e~~ELr~~L~s~--~~~~kk~alKkvIa~mt~G~Dv------S~LF~dVvk~~~S~d~--------elKKLvYL-YL~~y 95 (746)
T PTZ00429 33 EGAELQNDLNGT--DSYRKKAAVKRIIANMTMGRDV------SYLFVDVVKLAPSTDL--------ELKKLVYL-YVLST 95 (746)
T ss_pred hHHHHHHHHHCC--CHHHHHHHHHHHHHHHHCCCCc------hHHHHHHHHHhCCCCH--------HHHHHHHH-HHHHH
Confidence 345556666533 4668899999888777655322 2246667777776653 34443333 44445
Q ss_pred cCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhHHH
Q 015728 174 LVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEASDA 252 (401)
Q Consensus 174 ~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~ 252 (401)
+..+++. .++ ++..+.+-+.++++.+|..|.++|.++ .. ...+ + -+++++.+.+. .++-+++.
T Consensus 96 a~~~pel-alL----aINtl~KDl~d~Np~IRaLALRtLs~I-r~-------~~i~-e--~l~~~lkk~L~D~~pYVRKt 159 (746)
T PTZ00429 96 ARLQPEK-ALL----AVNTFLQDTTNSSPVVRALAVRTMMCI-RV-------SSVL-E--YTLEPLRRAVADPDPYVRKT 159 (746)
T ss_pred cccChHH-HHH----HHHHHHHHcCCCCHHHHHHHHHHHHcC-Cc-------HHHH-H--HHHHHHHHHhcCCCHHHHHH
Confidence 4333332 233 377788888889999999988888777 32 2222 2 35577777774 45669999
Q ss_pred HHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcC
Q 015728 253 GVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVS 332 (401)
Q Consensus 253 a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~ 332 (401)
|+.++..+-.... ..+.+.|.++.|.++|. +.+..++.+|+.+|..+......+..+. .+.+..|+.. +..-
T Consensus 160 Aalai~Kly~~~p--elv~~~~~~~~L~~LL~---D~dp~Vv~nAl~aL~eI~~~~~~~l~l~--~~~~~~Ll~~-L~e~ 231 (746)
T PTZ00429 160 AAMGLGKLFHDDM--QLFYQQDFKKDLVELLN---DNNPVVASNAAAIVCEVNDYGSEKIESS--NEWVNRLVYH-LPEC 231 (746)
T ss_pred HHHHHHHHHhhCc--ccccccchHHHHHHHhc---CCCccHHHHHHHHHHHHHHhCchhhHHH--HHHHHHHHHH-hhcC
Confidence 9999999975333 23456789999999998 7899999999999999985433332221 2345556653 3333
Q ss_pred ChhHHHHHHHHHHH
Q 015728 333 DHEGSENAINSLMM 346 (401)
Q Consensus 333 ~~~~~~~a~~~L~~ 346 (401)
++-.+-..+.+|..
T Consensus 232 ~EW~Qi~IL~lL~~ 245 (746)
T PTZ00429 232 NEWGQLYILELLAA 245 (746)
T ss_pred ChHHHHHHHHHHHh
Confidence 44556555555544
No 100
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=3e-05 Score=72.94 Aligned_cols=46 Identities=22% Similarity=0.519 Sum_probs=38.5
Q ss_pred ccccccccccCCc--e-EcCccccccHHhHHHHHHcCCCCCCCCcccCC
Q 015728 13 FRCPISLDLFTDP--V-TLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLH 58 (401)
Q Consensus 13 ~~C~iC~~~~~~P--v-~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~ 58 (401)
..|.||++.|.+- + .+||+|.|...||..|+.+....||+|+....
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~ 278 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIR 278 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCC
Confidence 5999999988742 3 37999999999999999976566999988654
No 101
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.62 E-value=0.00063 Score=61.61 Aligned_cols=186 Identities=10% Similarity=0.144 Sum_probs=109.4
Q ss_pred hhhhcChHHHHHHHHHHHHHHhcC--chhhhHHHh--cCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCch
Q 015728 103 QSHEATLETKLQIVQKIHVVLRES--PPASNCLIQ--LGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGET 178 (401)
Q Consensus 103 ~~~~~~~~~~~~a~~~L~~l~~~~--~~~r~~i~~--~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~ 178 (401)
+..+.+.+.|.+|+..|+.+..++ ......+.+ ...+..++..+.+... .+...|+. ++..++..-.
T Consensus 15 ~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs--------~v~~~A~~-~l~~l~~~l~ 85 (228)
T PF12348_consen 15 KESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRS--------KVSKTACQ-LLSDLARQLG 85 (228)
T ss_dssp HHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH-----------HHHHHHH-HHHHHHHHHG
T ss_pred cCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHH--------HHHHHHHH-HHHHHHHHHh
Confidence 455678999999999999999998 334444433 2455666666655443 37788888 7776663322
Q ss_pred hhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHH-HHHHHHHc-cCCchhHHHHHHH
Q 015728 179 ESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRL-LREIISLV-HHNSEASDAGVRA 256 (401)
Q Consensus 179 ~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~-i~~Lv~lL-~~~~~~~~~a~~a 256 (401)
..-+.. -...+|.|+..+.+++..+++.|..+|..+ ...- . + . ..+ ++.+...+ +.++.++..++..
T Consensus 86 ~~~~~~-~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i-~~~~------~-~-~-~~~~~~~l~~~~~~Kn~~vR~~~~~~ 154 (228)
T PF12348_consen 86 SHFEPY-ADILLPPLLKKLGDSKKFIREAANNALDAI-IESC------S-Y-S-PKILLEILSQGLKSKNPQVREECAEW 154 (228)
T ss_dssp GGGHHH-HHHHHHHHHHGGG---HHHHHHHHHHHHHH-HTTS--------H----HHHHHHHHHHTT-S-HHHHHHHHHH
T ss_pred HhHHHH-HHHHHHHHHHHHccccHHHHHHHHHHHHHH-HHHC------C-c-H-HHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 221112 124689999999888888999999999998 3221 1 0 1 123 45555555 4566799999999
Q ss_pred HHHhcC-CCchhHHHHh----cCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhH
Q 015728 257 FSALCS-TETNRKTLVQ----EGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSK 311 (401)
Q Consensus 257 L~~Ls~-~~~n~~~iv~----~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~ 311 (401)
|..+.. .+.+...+-. ...++.+.+.+. +++.++++.|-.++..+...-..+
T Consensus 155 l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~---D~~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 155 LAIILEKWGSDSSVLQKSAFLKQLVKALVKLLS---DADPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp HHHHHTT-----GGG--HHHHHHHHHHHHHHHT---SS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHccchHhhhcccchHHHHHHHHHHHCC---CCCHHHHHHHHHHHHHHHHHCCHh
Confidence 888764 3312222222 347778888888 789999999999999987654443
No 102
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.60 E-value=0.011 Score=56.92 Aligned_cols=243 Identities=14% Similarity=0.178 Sum_probs=167.1
Q ss_pred HHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCc-----hh----hhhhcc
Q 015728 115 IVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGE-----TE----SLNLLN 185 (401)
Q Consensus 115 a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~-----~~----~~~~v~ 185 (401)
.++.+.-++.- |.-...+++.++++.|+.+|..... ++.-..+. +|.-|+-.| ++ ....++
T Consensus 104 ~IQ~mhvlAt~-PdLYp~lveln~V~slL~LLgHeNt--------DI~iavvd-LLqELTD~Dv~~es~egAevLidaLv 173 (536)
T KOG2734|consen 104 IIQEMHVLATM-PDLYPILVELNAVQSLLELLGHENT--------DIAIAVVD-LLQELTDEDVLYESEEGAEVLIDALV 173 (536)
T ss_pred HHHHHHhhhcC-hHHHHHHHHhccHHHHHHHhcCCCc--------hhHHHHHH-HHHHhhhhcccccccccHHHHHHHHH
Confidence 55566666544 4466678899999999999977653 46666677 888777322 11 123345
Q ss_pred cCCchHHHHHHhhcCCH------HHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHccC--C-chhHHHHHHH
Q 015728 186 EESKMESFIVLFEHGSC------SIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHH--N-SEASDAGVRA 256 (401)
Q Consensus 186 ~~g~i~~Lv~~L~~~~~------~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~--~-~~~~~~a~~a 256 (401)
+.+.++.|++-+.+=+. ...++....+.|++...+ +++..+++. |.+.-|+.=+.+ . ..-+.+|..+
T Consensus 174 dg~vlaLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~---~~~~~~~e~-~ll~WLL~rl~~k~~f~aNk~YasEi 249 (536)
T KOG2734|consen 174 DGQVLALLVQNVERLDESVKEEADGVHNTLAVVENLVEVRP---AICTEIVEQ-GLLSWLLKRLKGKAAFDANKQYASEI 249 (536)
T ss_pred hccHHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccH---HHHHHHHHh-hHHHHHHHHHhcccCcchhHHHHHHH
Confidence 77888888877654332 334566677888855555 788888775 776666663422 2 3467888888
Q ss_pred HHHhcCCCc-hhHHHHhcCcHHHHHHHHHh--hcc----ccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHH
Q 015728 257 FSALCSTET-NRKTLVQEGAINGLIAYISN--ALT----RERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVF 329 (401)
Q Consensus 257 L~~Ls~~~~-n~~~iv~~G~v~~Lv~lL~~--~~~----~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~ 329 (401)
|.-+-.+.+ |+...-.-.+|..+++-+.- .++ +..+..++-...|+.+-..++||..+. .+.+++-. .+++
T Consensus 250 Laillq~s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl-~~EGlqLm-~Lml 327 (536)
T KOG2734|consen 250 LAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFL-KGEGLQLM-NLML 327 (536)
T ss_pred HHHHhccCchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhh-ccccHHHH-HHHH
Confidence 888776554 88888899999999987731 012 234667788888888888999999997 55555544 4466
Q ss_pred hcCChhHHHHHHHHHHHHhcCCH--HHHHHHHHcCcHHHHHH-HhhcC
Q 015728 330 RVSDHEGSENAINSLMMICCDSL--QAREEAICAGVLTQLLL-LLQSQ 374 (401)
Q Consensus 330 ~~~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~g~v~~L~~-ll~~~ 374 (401)
+... ..+..++++|-.+..+++ .....+++.+++...+. +|+.+
T Consensus 328 r~Kk-~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p 374 (536)
T KOG2734|consen 328 REKK-VSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFMKTP 374 (536)
T ss_pred HHHH-HhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHhhCc
Confidence 6643 577789999988877765 55668888888877666 45443
No 103
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.58 E-value=0.019 Score=57.34 Aligned_cols=253 Identities=13% Similarity=0.126 Sum_probs=157.6
Q ss_pred CChhhHHHHHHhh--------hhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHH
Q 015728 90 ATIDSLSTLKHSL--------QSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQF 161 (401)
Q Consensus 90 ~~~~~~~~l~~~l--------~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~ 161 (401)
.+++.+.+|.+.- .....+.....+|+++|.|..-.++..|+.+.+.|+.+.++..|+..... ..+.++
T Consensus 19 ~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~---~~~~d~ 95 (446)
T PF10165_consen 19 FTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDS---SQPSDV 95 (446)
T ss_pred ccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHccccc---CCChhH
Confidence 4556666655422 13345788999999999999999999999999999999999999876321 012457
Q ss_pred HHHHHHHHHHhhcCCchhh-hhhcccCCchHHHHHHhhc--------C---------CHHHHHHHHHHHHHHHhcccchh
Q 015728 162 VEESLSCVQKLLLVGETES-LNLLNEESKMESFIVLFEH--------G---------SCSIKKRLCHLVEVIISSSHETK 223 (401)
Q Consensus 162 ~~~a~~~~L~~l~~~~~~~-~~~v~~~g~i~~Lv~~L~~--------~---------~~~~~~~aa~~L~~l~s~~~~~~ 223 (401)
...... +|..++...... .+++.+.+++..++..|.. . +......+..+++|+ .....
T Consensus 96 ~Fl~~R-LLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNi-t~~~~-- 171 (446)
T PF10165_consen 96 EFLDSR-LLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNI-TLHYP-- 171 (446)
T ss_pred HHHHHH-HHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHh-hhccC--
Confidence 788888 888887655444 4556666788887776531 1 123345667788888 44321
Q ss_pred hhhhhhccchHHHHHHHHHcc--------C--CchhHHHHHHHHHHhcCC-Cch-------hH----HHHhcCcHHHHHH
Q 015728 224 ELCCKLGKDDRLLREIISLVH--------H--NSEASDAGVRAFSALCST-ETN-------RK----TLVQEGAINGLIA 281 (401)
Q Consensus 224 ~~~~~i~~~~g~i~~Lv~lL~--------~--~~~~~~~a~~aL~~Ls~~-~~n-------~~----~iv~~G~v~~Lv~ 281 (401)
.... ....+.++.|+.++. . ..+...++..+|.|+-.. .+. .. .-.....|..|+.
T Consensus 172 ~~~~--~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~ 249 (446)
T PF10165_consen 172 KSVP--EEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLD 249 (446)
T ss_pred cccc--hhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHH
Confidence 1111 011244555555541 1 134788888999888311 111 11 1123447888888
Q ss_pred HHHhhc--cc---cchHHHHHHHHHHHHhCCH-hhHHHHHh---------------CCCcHHHHHHHHHhcCChhHHHHH
Q 015728 282 YISNAL--TR---ERSLAAIAMARIEQLLAIE-NSKDALIN---------------NPNGVYALVKMVFRVSDHEGSENA 340 (401)
Q Consensus 282 lL~~~~--~~---~~~~~~~a~~~L~~La~~~-~~~~~~~~---------------~~g~i~~Lv~~l~~~~~~~~~~~a 340 (401)
+|...- .. -.+...--+.+|..++... ..|..+.. ....-..|+++|. +..+..++.+
T Consensus 250 ~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt-~~~~~~k~~v 328 (446)
T PF10165_consen 250 FLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMT-SPDPQLKDAV 328 (446)
T ss_pred HHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhC-CCCchHHHHH
Confidence 886420 11 1245556677788888653 33333321 2235667888544 4447899999
Q ss_pred HHHHHHHhcCCH
Q 015728 341 INSLMMICCDSL 352 (401)
Q Consensus 341 ~~~L~~l~~~~~ 352 (401)
...|+.||..+.
T Consensus 329 aellf~Lc~~d~ 340 (446)
T PF10165_consen 329 AELLFVLCKEDA 340 (446)
T ss_pred HHHHHHHHhhhH
Confidence 999999997653
No 104
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=6.4e-05 Score=67.30 Aligned_cols=49 Identities=20% Similarity=0.284 Sum_probs=41.7
Q ss_pred CCcccccccccccCCceEc-CccccccHHhHHHHHHc-CCCCCCCCcccCC
Q 015728 10 PHLFRCPISLDLFTDPVTL-CTGQTYDRSSIEKWLAA-GNLTCPVTMQTLH 58 (401)
Q Consensus 10 ~~~~~C~iC~~~~~~Pv~~-~Cgh~fc~~Ci~~~~~~-~~~~CP~c~~~~~ 58 (401)
..+-.||+|++.-..|.+. +|||.||..|+...+.. ..++||.|+.+..
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 4578999999999999986 59999999999886653 4689999988764
No 105
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=3e-05 Score=70.29 Aligned_cols=48 Identities=19% Similarity=0.197 Sum_probs=43.5
Q ss_pred ccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCC
Q 015728 13 FRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDP 60 (401)
Q Consensus 13 ~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~ 60 (401)
-.|+||...+.-|+.+.|+|.||.-||+-....+..+|++||.++.+.
T Consensus 8 ~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 8 KECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred CcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 469999999999999999999999999988776788899999999764
No 106
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.54 E-value=0.016 Score=56.42 Aligned_cols=254 Identities=11% Similarity=0.079 Sum_probs=165.4
Q ss_pred HHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHH
Q 015728 116 VQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIV 195 (401)
Q Consensus 116 ~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~ 195 (401)
+..|..+.+.++.-|..+.-.-..+.+..++-+++ .+++-.+.. +++.+..+.+..+ .+.+.+.=-.++.
T Consensus 4 ~N~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~--------~~vraa~yR-ilRy~i~d~~~l~-~~~~l~id~~ii~ 73 (371)
T PF14664_consen 4 ANDLVDLLKRHPTLKYDLVLSFFGERIQCMLLSDS--------KEVRAAGYR-ILRYLISDEESLQ-ILLKLHIDIFIIR 73 (371)
T ss_pred HHHHHHHHHhCchhhhhhhHHHHHHHHHHHHCCCc--------HHHHHHHHH-HHHHHHcCHHHHH-HHHHcCCchhhHh
Confidence 45677777888877777765556666666565554 348888888 9988776554444 4435553334455
Q ss_pred HhhcC--CHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cCCchhHHHHHHHHHHhcCCCchhHHHHh
Q 015728 196 LFEHG--SCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-HHNSEASDAGVRAFSALCSTETNRKTLVQ 272 (401)
Q Consensus 196 ~L~~~--~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~a~~aL~~Ls~~~~n~~~iv~ 272 (401)
-|... +...|++|...+..+..... ....+ ..|++..+|.+. +.+...+..+...|..|+..+ ...+++
T Consensus 74 SL~~~~~~~~ER~QALkliR~~l~~~~----~~~~~--~~~vvralvaiae~~~D~lr~~cletL~El~l~~--P~lv~~ 145 (371)
T PF14664_consen 74 SLDRDNKNDVEREQALKLIRAFLEIKK----GPKEI--PRGVVRALVAIAEHEDDRLRRICLETLCELALLN--PELVAE 145 (371)
T ss_pred hhcccCCChHHHHHHHHHHHHHHHhcC----CcccC--CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhC--HHHHHH
Confidence 56543 45678899999988843321 12233 248999999999 456679999999999999532 345678
Q ss_pred cCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhc------CCh--hHHHHHHHHH
Q 015728 273 EGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRV------SDH--EGSENAINSL 344 (401)
Q Consensus 273 ~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~------~~~--~~~~~a~~~L 344 (401)
+|++..|++.+. ++..+..+..+.++.++-..+..|.-+. ..--+..++.-.... ++. .--..+..++
T Consensus 146 ~gG~~~L~~~l~---d~~~~~~~~l~~~lL~lLd~p~tR~yl~-~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai 221 (371)
T PF14664_consen 146 CGGIRVLLRALI---DGSFSISESLLDTLLYLLDSPRTRKYLR-PGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAI 221 (371)
T ss_pred cCCHHHHHHHHH---hccHhHHHHHHHHHHHHhCCcchhhhhc-CCccHHHHHHhhhhhhccccccchHHHHHHHHHHHH
Confidence 999999999998 4444588899999999999999998774 333355555533222 111 1223344444
Q ss_pred HHHhcC-CHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728 345 MMICCD-SLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS 392 (401)
Q Consensus 345 ~~l~~~-~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~ 392 (401)
..+-+. ++-..--+-+..++..|+..|+.+ ++..|+....++.-+-+
T Consensus 222 ~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p-~~~ir~~Ildll~dllr 269 (371)
T PF14664_consen 222 STLLRSWPGLLYLSMNDFRGLKSLVDSLRLP-NPEIRKAILDLLFDLLR 269 (371)
T ss_pred HHHHhcCCceeeeecCCchHHHHHHHHHcCC-CHHHHHHHHHHHHHHHC
Confidence 443222 110000011124688899999888 88899988888776644
No 107
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.50 E-value=0.00031 Score=53.20 Aligned_cols=87 Identities=22% Similarity=0.260 Sum_probs=68.5
Q ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHH
Q 015728 276 INGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAR 355 (401)
Q Consensus 276 v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~ 355 (401)
||.|++.|.+ +++..++..++.+|..+- +..+++.|++ ++++.++.++..|+.+|..+-
T Consensus 1 i~~L~~~l~~--~~~~~vr~~a~~~L~~~~-----------~~~~~~~L~~-~l~d~~~~vr~~a~~aL~~i~------- 59 (88)
T PF13646_consen 1 IPALLQLLQN--DPDPQVRAEAARALGELG-----------DPEAIPALIE-LLKDEDPMVRRAAARALGRIG------- 59 (88)
T ss_dssp HHHHHHHHHT--SSSHHHHHHHHHHHHCCT-----------HHHHHHHHHH-HHTSSSHHHHHHHHHHHHCCH-------
T ss_pred CHHHHHHHhc--CCCHHHHHHHHHHHHHcC-----------CHhHHHHHHH-HHcCCCHHHHHHHHHHHHHhC-------
Confidence 6899999954 788899999998888441 3356889999 568889999999999998762
Q ss_pred HHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHH
Q 015728 356 EEAICAGVLTQLLLLLQSQCSNRTKTKARMLL 387 (401)
Q Consensus 356 ~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L 387 (401)
...+++.|..+++++.+..+|..|...|
T Consensus 60 ----~~~~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 60 ----DPEAIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp ----HHHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 2337889999998875777899888876
No 108
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.50 E-value=0.0002 Score=45.71 Aligned_cols=40 Identities=13% Similarity=0.351 Sum_probs=35.9
Q ss_pred CchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhC
Q 015728 264 ETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLA 306 (401)
Q Consensus 264 ~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~ 306 (401)
++++..+++.|++++|+++|. +++.+++..++++|.+|+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~---~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLK---SEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHc---CCCHHHHHHHHHHHHHHcC
Confidence 457888999999999999999 6788999999999999973
No 109
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=4.4e-05 Score=78.11 Aligned_cols=45 Identities=27% Similarity=0.525 Sum_probs=40.8
Q ss_pred cccccccccccCC-----ceEcCccccccHHhHHHHHHcCCCCCCCCcccC
Q 015728 12 LFRCPISLDLFTD-----PVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTL 57 (401)
Q Consensus 12 ~~~C~iC~~~~~~-----Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~ 57 (401)
+-.|+||.+.+.. |..++|||.|+..|+..|++ ...+||.||..+
T Consensus 291 ~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~e-r~qtCP~CR~~~ 340 (543)
T KOG0802|consen 291 DELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFE-RQQTCPTCRTVL 340 (543)
T ss_pred CCeeeeechhhccccccccceeecccchHHHHHHHHHH-HhCcCCcchhhh
Confidence 6789999999998 78899999999999999999 578899999844
No 110
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.47 E-value=0.00012 Score=54.31 Aligned_cols=44 Identities=25% Similarity=0.452 Sum_probs=32.2
Q ss_pred ccccccccCC-ceEc-CccccccHHhHHHHHHc--CCCCCCCCcccCC
Q 015728 15 CPISLDLFTD-PVTL-CTGQTYDRSSIEKWLAA--GNLTCPVTMQTLH 58 (401)
Q Consensus 15 C~iC~~~~~~-Pv~~-~Cgh~fc~~Ci~~~~~~--~~~~CP~c~~~~~ 58 (401)
||.|...-.+ |+.. .|+|.|...||.+|+.+ ....||.||++..
T Consensus 35 Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 35 CPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 4444433223 6655 69999999999999996 3578999998764
No 111
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.46 E-value=0.017 Score=56.79 Aligned_cols=156 Identities=16% Similarity=0.122 Sum_probs=100.9
Q ss_pred hHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhHHHHHHHHHHhcCCCchhH
Q 015728 190 MESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEASDAGVRAFSALCSTETNRK 268 (401)
Q Consensus 190 i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~a~~aL~~Ls~~~~n~~ 268 (401)
+..|+..|.+.+..++..++.+|..+ -. .+..+.|+.+|+ .++.++..++.++..
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i-~~--------------~~a~~~L~~~L~~~~p~vR~aal~al~~--------- 143 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWL-GG--------------RQAEPWLEPLLAASEPPGRAIGLAALGA--------- 143 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcC-Cc--------------hHHHHHHHHHhcCCChHHHHHHHHHHHh---------
Confidence 77888888888888888888888666 21 256677888884 444566666655544
Q ss_pred HHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHh
Q 015728 269 TLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMIC 348 (401)
Q Consensus 269 ~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~ 348 (401)
......++++.+|. +.+..++..|+.+|..+. ....++.|.. .+.+.++.++..|+.+|..+-
T Consensus 144 --r~~~~~~~L~~~L~---d~d~~Vra~A~raLG~l~-----------~~~a~~~L~~-al~d~~~~VR~aA~~al~~lG 206 (410)
T TIGR02270 144 --HRHDPGPALEAALT---HEDALVRAAALRALGELP-----------RRLSESTLRL-YLRDSDPEVRFAALEAGLLAG 206 (410)
T ss_pred --hccChHHHHHHHhc---CCCHHHHHHHHHHHHhhc-----------cccchHHHHH-HHcCCCHHHHHHHHHHHHHcC
Confidence 22335677888887 677888888888888763 4456667776 466777778887877775542
Q ss_pred cCCHHHH------------------HHHHHc----CcHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 015728 349 CDSLQAR------------------EEAICA----GVLTQLLLLLQSQCSNRTKTKARMLLKLLR 391 (401)
Q Consensus 349 ~~~~~~~------------------~~~~~~----g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~ 391 (401)
. +... ..+... .+++.|..+++++ .+++.+..+|..+.
T Consensus 207 ~--~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~ll~d~---~vr~~a~~AlG~lg 266 (410)
T TIGR02270 207 S--RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQAWLRELLQAA---ATRREALRAVGLVG 266 (410)
T ss_pred C--HhHHHHHHHHHhccCccHHHHHHHHHHhCCchhHHHHHHHHhcCh---hhHHHHHHHHHHcC
Confidence 1 1111 111111 3556667776654 37888888776654
No 112
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.053 Score=57.66 Aligned_cols=249 Identities=15% Similarity=0.125 Sum_probs=163.0
Q ss_pred cChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhccc
Q 015728 107 ATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNE 186 (401)
Q Consensus 107 ~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~ 186 (401)
+.+..|.-|+..+..+...-+ .-.-+++.|.+..|+.+|-|-. ..++.++. +|..|+....-.++.+ +
T Consensus 1784 ~~~~iq~LaL~Vi~~~Tan~~-Cv~~~a~~~vL~~LL~lLHS~P---------S~R~~vL~-vLYAL~S~~~i~keA~-~ 1851 (2235)
T KOG1789|consen 1784 KHPKLQILALQVILLATANKE-CVTDLATCNVLTTLLTLLHSQP---------SMRARVLD-VLYALSSNGQIGKEAL-E 1851 (2235)
T ss_pred CCchHHHHHHHHHHHHhcccH-HHHHHHhhhHHHHHHHHHhcCh---------HHHHHHHH-HHHHHhcCcHHHHHHH-h
Confidence 457788889998888776544 6777888999999999997753 36888888 8888886655445555 6
Q ss_pred CCchHHHHHHhh-cCCHHHHHHHHHHHHHHHhccc--c----------------------------------------hh
Q 015728 187 ESKMESFIVLFE-HGSCSIKKRLCHLVEVIISSSH--E----------------------------------------TK 223 (401)
Q Consensus 187 ~g~i~~Lv~~L~-~~~~~~~~~aa~~L~~l~s~~~--~----------------------------------------~~ 223 (401)
.|++.-+.+++- +.+++.|..+|..+.++++..- + |+
T Consensus 1852 hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~ 1931 (2235)
T KOG1789|consen 1852 HGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNE 1931 (2235)
T ss_pred cCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCH
Confidence 788877777764 4467788888989988833211 0 00
Q ss_pred hhhhhh--------------------------------------------------cc-----------chHHHHHHHHH
Q 015728 224 ELCCKL--------------------------------------------------GK-----------DDRLLREIISL 242 (401)
Q Consensus 224 ~~~~~i--------------------------------------------------~~-----------~~g~i~~Lv~l 242 (401)
..+..+ .. ..|.+..+..+
T Consensus 1932 ~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lel 2011 (2235)
T KOG1789|consen 1932 VTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLEL 2011 (2235)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHH
Confidence 001000 00 00122222333
Q ss_pred c-cCCc--hhHHHHHHHHHHhcC-CCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCC
Q 015728 243 V-HHNS--EASDAGVRAFSALCS-TETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNP 318 (401)
Q Consensus 243 L-~~~~--~~~~~a~~aL~~Ls~-~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~ 318 (401)
+ ..++ .....-..|+..|-+ .+.-..++-..|.+|.++..+. ..+...-..|+.+|..|+.+.--..++. ..
T Consensus 2012 m~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~---~~n~s~P~SaiRVlH~Lsen~~C~~AMA-~l 2087 (2235)
T KOG1789|consen 2012 MSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMC---LQNTSAPRSAIRVLHELSENQFCCDAMA-QL 2087 (2235)
T ss_pred hcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHH---hcCCcCcHHHHHHHHHHhhccHHHHHHh-cc
Confidence 3 1222 122233334444443 4445666667899999999987 3444555789999999999887777775 66
Q ss_pred CcHHHHHHHHHhcCChhHHHHHHHHHHHHhcC-CHHHHHHHHHcCcHHHHHHHhhc
Q 015728 319 NGVYALVKMVFRVSDHEGSENAINSLMMICCD-SLQAREEAICAGVLTQLLLLLQS 373 (401)
Q Consensus 319 g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~v~~L~~ll~~ 373 (401)
.++..++..|.+-.+ ...-|+.+|-.+... .++....+++.|.|+.|+.||..
T Consensus 2088 ~~i~~~m~~mkK~~~--~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~ 2141 (2235)
T KOG1789|consen 2088 PCIDGIMKSMKKQPS--LMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDS 2141 (2235)
T ss_pred ccchhhHHHHHhcch--HHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhcc
Confidence 777778886655433 334677777666543 23677789999999999999954
No 113
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.45 E-value=0.12 Score=49.80 Aligned_cols=224 Identities=13% Similarity=0.136 Sum_probs=154.2
Q ss_pred ChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcc------cCCchHHHHHHhhcCCHHHHHHHHHH
Q 015728 138 FLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLN------EESKMESFIVLFEHGSCSIKKRLCHL 211 (401)
Q Consensus 138 ~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~------~~g~i~~Lv~~L~~~~~~~~~~aa~~ 211 (401)
.+.+++.+++..+. .+..+.++. ++.-+-..+.....++. ..-.-++.+.+|..++.-..+.++++
T Consensus 66 ~v~~fi~LlS~~~k-------dd~v~yvL~-li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~I 137 (442)
T KOG2759|consen 66 YVKTFINLLSHIDK-------DDTVQYVLT-LIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRI 137 (442)
T ss_pred HHHHHHHHhchhhh-------HHHHHHHHH-HHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHH
Confidence 56778888765543 345666666 55544433322222221 11236778889989988888888999
Q ss_pred HHHHHhcccchhhhhhhhcc-chH-HHHHHHHHc-c-CCchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhc
Q 015728 212 VEVIISSSHETKELCCKLGK-DDR-LLREIISLV-H-HNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNAL 287 (401)
Q Consensus 212 L~~l~s~~~~~~~~~~~i~~-~~g-~i~~Lv~lL-~-~~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~ 287 (401)
+..+ +... ...+.. ... ....|-..+ + .+..-...++++|-.+...++.|..++.+.++..++..+.+.
T Consensus 138 ls~l-a~~g-----~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~- 210 (442)
T KOG2759|consen 138 LSKL-ACFG-----NCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILAST- 210 (442)
T ss_pred HHHH-HHhc-----cccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhcc-
Confidence 9998 5543 111111 001 223444455 3 345678889999999999999999999999999999999421
Q ss_pred cccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCH------HHHHHHHHc
Q 015728 288 TRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSL------QAREEAICA 361 (401)
Q Consensus 288 ~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~------~~~~~~~~~ 361 (401)
..+-.++=..+-.++.|.-.+...+.+ ...+.|+.|++.+..+..+++.+..+.++.|++...+ +....|+..
T Consensus 211 ~~~~QlQYqsifciWlLtFn~~~ae~~-~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~ 289 (442)
T KOG2759|consen 211 KCGFQLQYQSIFCIWLLTFNPHAAEKL-KRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLC 289 (442)
T ss_pred CcchhHHHHHHHHHHHhhcCHHHHHHH-hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhc
Confidence 556788888999999999888888777 5889999999944333456788889999999987763 445677888
Q ss_pred CcHHHHHHHhhcCCCH
Q 015728 362 GVLTQLLLLLQSQCSN 377 (401)
Q Consensus 362 g~v~~L~~ll~~~~~~ 377 (401)
++.+.+-.|-+.+=++
T Consensus 290 ~v~k~l~~L~~rkysD 305 (442)
T KOG2759|consen 290 KVLKTLQSLEERKYSD 305 (442)
T ss_pred CchHHHHHHHhcCCCc
Confidence 8777776665544333
No 114
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=97.43 E-value=0.0019 Score=62.43 Aligned_cols=173 Identities=12% Similarity=0.149 Sum_probs=125.4
Q ss_pred cCCchHHHHHHhhcCCHHH--HHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc--cCCchhHHHHHHHHHHhc
Q 015728 186 EESKMESFIVLFEHGSCSI--KKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV--HHNSEASDAGVRAFSALC 261 (401)
Q Consensus 186 ~~g~i~~Lv~~L~~~~~~~--~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL--~~~~~~~~~a~~aL~~Ls 261 (401)
..|++..|++++..++.+. +..|+.+|..+ -.. +|+..++.. | +..++.+- +...+..+..+..|-++.
T Consensus 178 ~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~-~~a----eN~d~va~~-~-~~~Il~lAK~~e~~e~aR~~~~il~~mF 250 (832)
T KOG3678|consen 178 LDGGLDLLLRMFQAPNLETSVRVEAARLLEQI-LVA----ENRDRVARI-G-LGVILNLAKEREPVELARSVAGILEHMF 250 (832)
T ss_pred ccchHHHHHHHHhCCchhHHHHHHHHHHHHHH-Hhh----hhhhHHhhc-c-chhhhhhhhhcCcHHHHHHHHHHHHHHh
Confidence 5688999999999987754 88999999998 332 667777654 3 23333333 445678999999999999
Q ss_pred CC-CchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhC--CHhhHHHHHhCCCcHHHHHHHHHhcCChhHHH
Q 015728 262 ST-ETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLA--IENSKDALINNPNGVYALVKMVFRVSDHEGSE 338 (401)
Q Consensus 262 ~~-~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~--~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~ 338 (401)
.+ ++....++++|++..++--.+ ..++.+...++-+|.|.+- +.+.+..++ +..+-..|.- +.-..+.-.+-
T Consensus 251 KHSeet~~~Lvaa~~lD~vl~~~r---Rt~P~lLRH~ALAL~N~~L~~~~a~qrrmv-eKr~~EWLF~-LA~skDel~R~ 325 (832)
T KOG3678|consen 251 KHSEETCQRLVAAGGLDAVLYWCR---RTDPALLRHCALALGNCALHGGQAVQRRMV-EKRAAEWLFP-LAFSKDELLRL 325 (832)
T ss_pred hhhHHHHHHHHhhcccchheeecc---cCCHHHHHHHHHHhhhhhhhchhHHHHHHH-Hhhhhhhhhh-hhcchHHHHHH
Confidence 64 457889999999999887777 4678889999999998885 456777776 5566677776 44444656777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHh
Q 015728 339 NAINSLMMICCDSLQAREEAICAGVLTQLLLLL 371 (401)
Q Consensus 339 ~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll 371 (401)
+|.-+.+-|+.+ .+.-.++.++|.+...=.++
T Consensus 326 ~AClAV~vlat~-KE~E~~VrkS~TlaLVEPlv 357 (832)
T KOG3678|consen 326 HACLAVAVLATN-KEVEREVRKSGTLALVEPLV 357 (832)
T ss_pred HHHHHHhhhhhh-hhhhHHHhhccchhhhhhhh
Confidence 888888888876 45555666776654333333
No 115
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.36 E-value=0.015 Score=55.95 Aligned_cols=183 Identities=16% Similarity=0.189 Sum_probs=122.0
Q ss_pred CChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 015728 137 GFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVII 216 (401)
Q Consensus 137 G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~ 216 (401)
-.++.++.++.+.+. .++..|.. .+..+ .....++.+..++.+.+..+|..|+.+|..+
T Consensus 43 ~~~~~~~~~l~~~~~--------~vr~~aa~-~l~~~-----------~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~- 101 (335)
T COG1413 43 EAADELLKLLEDEDL--------LVRLSAAV-ALGEL-----------GSEEAVPLLRELLSDEDPRVRDAAADALGEL- 101 (335)
T ss_pred hhHHHHHHHHcCCCH--------HHHHHHHH-HHhhh-----------chHHHHHHHHHHhcCCCHHHHHHHHHHHHcc-
Confidence 468888999988753 37777777 53321 1234689999999999999999999988777
Q ss_pred hcccchhhhhhhhccchHHHHHHHHHcc--CCchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccc---
Q 015728 217 SSSHETKELCCKLGKDDRLLREIISLVH--HNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRER--- 291 (401)
Q Consensus 217 s~~~~~~~~~~~i~~~~g~i~~Lv~lL~--~~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~--- 291 (401)
-. ...+++|+.+|. .+..++..++++|..+-. ..++.+++..+. +...
T Consensus 102 ~~--------------~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~----------~~a~~~l~~~l~---~~~~~~a 154 (335)
T COG1413 102 GD--------------PEAVPPLVELLENDENEGVRAAAARALGKLGD----------ERALDPLLEALQ---DEDSGSA 154 (335)
T ss_pred CC--------------hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc----------hhhhHHHHHHhc---cchhhhh
Confidence 21 246799999995 345599999999887754 223888888888 3331
Q ss_pred ---------hHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 015728 292 ---------SLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAG 362 (401)
Q Consensus 292 ---------~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g 362 (401)
.++..+...|..+ .+...++.+.. .++.....++..|+.+|..+...+ ..
T Consensus 155 ~~~~~~~~~~~r~~a~~~l~~~-----------~~~~~~~~l~~-~l~~~~~~vr~~Aa~aL~~~~~~~---------~~ 213 (335)
T COG1413 155 AAALDAALLDVRAAAAEALGEL-----------GDPEAIPLLIE-LLEDEDADVRRAAASALGQLGSEN---------VE 213 (335)
T ss_pred hhhccchHHHHHHHHHHHHHHc-----------CChhhhHHHHH-HHhCchHHHHHHHHHHHHHhhcch---------hh
Confidence 1233333333322 46678888888 466666688999999998887664 33
Q ss_pred cHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 015728 363 VLTQLLLLLQSQCSNRTKTKARMLLKL 389 (401)
Q Consensus 363 ~v~~L~~ll~~~~~~~~~~~A~~~L~~ 389 (401)
+.+.+...++.+ +..+|..+...|..
T Consensus 214 ~~~~l~~~~~~~-~~~vr~~~~~~l~~ 239 (335)
T COG1413 214 AADLLVKALSDE-SLEVRKAALLALGE 239 (335)
T ss_pred HHHHHHHHhcCC-CHHHHHHHHHHhcc
Confidence 334455555444 55666555555543
No 116
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.30 E-value=0.00013 Score=70.85 Aligned_cols=51 Identities=22% Similarity=0.342 Sum_probs=44.0
Q ss_pred CCcccccccccccCCceEcCccccccHHhHHHHHHc----CCCCCCCCcccCCCC
Q 015728 10 PHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAA----GNLTCPVTMQTLHDP 60 (401)
Q Consensus 10 ~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~----~~~~CP~c~~~~~~~ 60 (401)
..+..|.+|.+...+|+...|.|.||+.|+.+|... ...+||.|...++..
T Consensus 534 k~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 534 KGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred cCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 356789999999999999999999999999998774 358899998877654
No 117
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.00016 Score=65.57 Aligned_cols=48 Identities=21% Similarity=0.447 Sum_probs=38.9
Q ss_pred cccccccccccCC--c-eEcCccccccHHhHHHHHHcCCCCCCCCcccCCC
Q 015728 12 LFRCPISLDLFTD--P-VTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHD 59 (401)
Q Consensus 12 ~~~C~iC~~~~~~--P-v~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~ 59 (401)
...|.||++-|.+ . +.+||.|.|...|+.+|...-...||+|+..+.+
T Consensus 323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 3579999997753 2 3479999999999999998556679999987754
No 118
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.20 E-value=0.00066 Score=43.23 Aligned_cols=39 Identities=21% Similarity=0.223 Sum_probs=33.8
Q ss_pred chhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhc
Q 015728 127 PPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLL 174 (401)
Q Consensus 127 ~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~ 174 (401)
+.++..+++.|+++.|+.+|.+++ .++++.+++ +|.||+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~--------~~i~~~a~~-aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSED--------EEVVKEAAW-ALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCC--------HHHHHHHHH-HHHHHc
Confidence 348889999999999999998665 459999999 999886
No 119
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.16 Score=54.24 Aligned_cols=263 Identities=16% Similarity=0.161 Sum_probs=155.9
Q ss_pred hHHHHHHHHHHHHHHhcCchhhhHHHh----cCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhc
Q 015728 109 LETKLQIVQKIHVVLRESPPASNCLIQ----LGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLL 184 (401)
Q Consensus 109 ~~~~~~a~~~L~~l~~~~~~~r~~i~~----~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v 184 (401)
.+....++..|+|+.+.+|+-...+.. .|-.+.+..+|.+... ++++.-|+. ++..++.. .++..-+
T Consensus 1739 ~~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~-------~~iq~LaL~-Vi~~~Tan-~~Cv~~~ 1809 (2235)
T KOG1789|consen 1739 ETKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKH-------PKLQILALQ-VILLATAN-KECVTDL 1809 (2235)
T ss_pred HHHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCC-------chHHHHHHH-HHHHHhcc-cHHHHHH
Confidence 345677999999999999964444332 5888999999987654 569999999 88877754 4555555
Q ss_pred ccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc--cCCchhHHHHHHHHHHhcC
Q 015728 185 NEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV--HHNSEASDAGVRAFSALCS 262 (401)
Q Consensus 185 ~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL--~~~~~~~~~a~~aL~~Ls~ 262 (401)
++.|.+..|+.+|.+ -+..|+.+..+|..| ++... -.+..+ +. |++.-+..++ ....+.+-+|+..|..|..
T Consensus 1810 a~~~vL~~LL~lLHS-~PS~R~~vL~vLYAL-~S~~~--i~keA~-~h-g~l~yil~~~c~~~~~QqRAqaAeLlaKl~A 1883 (2235)
T KOG1789|consen 1810 ATCNVLTTLLTLLHS-QPSMRARVLDVLYAL-SSNGQ--IGKEAL-EH-GGLMYILSILCLTNSDQQRAQAAELLAKLQA 1883 (2235)
T ss_pred HhhhHHHHHHHHHhc-ChHHHHHHHHHHHHH-hcCcH--HHHHHH-hc-CchhhhhHHHhccCcHHHHHHHHHHHHHhhh
Confidence 678888888888854 577899999999999 65541 333333 33 4455555444 2233344444444333321
Q ss_pred CC----------------------------------------c-------------------------------------
Q 015728 263 TE----------------------------------------T------------------------------------- 265 (401)
Q Consensus 263 ~~----------------------------------------~------------------------------------- 265 (401)
++ +
T Consensus 1884 dkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~P 1963 (2235)
T KOG1789|consen 1884 DKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTP 1963 (2235)
T ss_pred ccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCc
Confidence 11 0
Q ss_pred -------------------hhHHHHhc------------CcHHHHHHHHHhhccccchHHHH-HHHHHHHHhCCHhhHHH
Q 015728 266 -------------------NRKTLVQE------------GAINGLIAYISNALTRERSLAAI-AMARIEQLLAIENSKDA 313 (401)
Q Consensus 266 -------------------n~~~iv~~------------G~v~~Lv~lL~~~~~~~~~~~~~-a~~~L~~La~~~~~~~~ 313 (401)
+|.-+++- |.++.+++++... .......+. ..+..+.+..++.-..+
T Consensus 1964 EqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~-~peqh~l~lLt~A~V~L~r~hP~LADq 2042 (2235)
T KOG1789|consen 1964 EQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRP-TPEQHELDLLTKAFVELVRHHPNLADQ 2042 (2235)
T ss_pred hhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCC-CcccchhHHHHHHHHHHHHhCcchhhh
Confidence 00000000 0111111122100 011111111 22223333345555566
Q ss_pred HHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728 314 LINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS 392 (401)
Q Consensus 314 ~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~ 392 (401)
+ ..-|.+|.++..|- ..+...-..|+++|..|+.+ .-+.++|..-..+..++..|....+- -.-|..+|+.+-+
T Consensus 2043 i-p~LGylPK~~~Am~-~~n~s~P~SaiRVlH~Lsen-~~C~~AMA~l~~i~~~m~~mkK~~~~--~GLA~EalkR~~~ 2116 (2235)
T KOG1789|consen 2043 L-PSLGYLPKFCTAMC-LQNTSAPRSAIRVLHELSEN-QFCCDAMAQLPCIDGIMKSMKKQPSL--MGLAAEALKRLMK 2116 (2235)
T ss_pred C-CCccchHHHHHHHH-hcCCcCcHHHHHHHHHHhhc-cHHHHHHhccccchhhHHHHHhcchH--HHHHHHHHHHHHH
Confidence 6 48899999999754 33335678899999999976 56777888888888888887654222 2256666655544
No 120
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.12 E-value=0.11 Score=50.40 Aligned_cols=244 Identities=13% Similarity=0.177 Sum_probs=156.6
Q ss_pred hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCc-----h----hhhHHHhcCChHHHHHHhccCCcccchhhhHHHHH
Q 015728 93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESP-----P----ASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVE 163 (401)
Q Consensus 93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~-----~----~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~ 163 (401)
-.+.++.++|.-.+ .+.-...+.-|+.|...+- + --..+++.++++.||+-++.-+.. ..+...-..
T Consensus 125 n~V~slL~LLgHeN--tDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEs--vkeea~gv~ 200 (536)
T KOG2734|consen 125 NAVQSLLELLGHEN--TDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDES--VKEEADGVH 200 (536)
T ss_pred ccHHHHHHHhcCCC--chhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhc--chhhhhhhH
Confidence 34555666665333 3466788888888885532 2 234566789999999988644432 112233445
Q ss_pred HHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhhc--CCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHH
Q 015728 164 ESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEH--GSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIIS 241 (401)
Q Consensus 164 ~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~--~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~ 241 (401)
.++. ++-|+..-++..-..+++.|.+.-|+..+.. .-..-+..|..+|.-+....+ +++...+.-.| |-.|+.
T Consensus 201 ~~L~-vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~---e~~~~~~~l~G-iD~lL~ 275 (536)
T KOG2734|consen 201 NTLA-VVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSD---ENRKLLGPLDG-IDVLLR 275 (536)
T ss_pred HHHH-HHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCc---hhhhhhcCccc-HHHHHh
Confidence 5566 6666664444443344466766665554432 234566778888877734333 68888887644 566666
Q ss_pred Hc----cCC------chhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHh--
Q 015728 242 LV----HHN------SEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIEN-- 309 (401)
Q Consensus 242 lL----~~~------~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~-- 309 (401)
-+ ..+ .+...+--.+|+.+-..+.||.+++...++....-+++ . ....+..++.+|-+.-.+++
T Consensus 276 ~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr---~-Kk~sr~SalkvLd~am~g~~gt 351 (536)
T KOG2734|consen 276 QLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLR---E-KKVSRGSALKVLDHAMFGPEGT 351 (536)
T ss_pred hcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHH---H-HHHhhhhHHHHHHHHHhCCCch
Confidence 55 222 13677777888888889999999999989887777776 2 34567789999998887655
Q ss_pred -hHHHHHhCCCcHHHHHHHHHhc---------CChhHHHHHHHHHHHHhcC
Q 015728 310 -SKDALINNPNGVYALVKMVFRV---------SDHEGSENAINSLMMICCD 350 (401)
Q Consensus 310 -~~~~~~~~~g~i~~Lv~~l~~~---------~~~~~~~~a~~~L~~l~~~ 350 (401)
+...++ +.+|.....-+.++. +.....+...++|+++-.+
T Consensus 352 ~~C~kfV-e~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~ 401 (536)
T KOG2734|consen 352 PNCNKFV-EILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRN 401 (536)
T ss_pred HHHHHHH-HHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHh
Confidence 566775 666666666644422 2334677788888877553
No 121
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.09 E-value=0.16 Score=46.05 Aligned_cols=202 Identities=13% Similarity=0.147 Sum_probs=117.3
Q ss_pred cCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHH
Q 015728 136 LGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVI 215 (401)
Q Consensus 136 ~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l 215 (401)
..++|.|+..|...+.. +.++.+|.. +|..+- + .+.++.+-+..+.+..++++.+..+|..+
T Consensus 66 ~~Av~~l~~vl~desq~------pmvRhEAae-alga~~--~---------~~~~~~l~k~~~dp~~~v~ETc~lAi~rl 127 (289)
T KOG0567|consen 66 EDAVPVLVEVLLDESQE------PMVRHEAAE-ALGAIG--D---------PESLEILTKYIKDPCKEVRETCELAIKRL 127 (289)
T ss_pred chhhHHHHHHhcccccc------hHHHHHHHH-HHHhhc--c---------hhhHHHHHHHhcCCccccchHHHHHHHHH
Confidence 45788888888777765 677777877 666543 1 12233344444455566777666677776
Q ss_pred Hhcccchhhhhhhhcc----------------chHHHHHHHHHc-cCCch--hHHHHHHHHHHhcCCCchhHHHHhcCcH
Q 015728 216 ISSSHETKELCCKLGK----------------DDRLLREIISLV-HHNSE--ASDAGVRAFSALCSTETNRKTLVQEGAI 276 (401)
Q Consensus 216 ~s~~~~~~~~~~~i~~----------------~~g~i~~Lv~lL-~~~~~--~~~~a~~aL~~Ls~~~~n~~~iv~~G~v 276 (401)
...+ .+.. ..+-+..|-..| +...+ -+..|.-.|+|+-. ..+|
T Consensus 128 -e~~~-------~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~----------EeaI 189 (289)
T KOG0567|consen 128 -EWKD-------IIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT----------EEAI 189 (289)
T ss_pred -HHhh-------ccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc----------HHHH
Confidence 3221 1111 001122233222 21111 11222222222211 1245
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhc-CChhHHHHHHHHHHHHhcCCHHHH
Q 015728 277 NGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRV-SDHEGSENAINSLMMICCDSLQAR 355 (401)
Q Consensus 277 ~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~-~~~~~~~~a~~~L~~l~~~~~~~~ 355 (401)
..|++=|. .++.-.+..++-++.+| ..+-+||.|.+.|... ..+.++.-|+.+|..++. +++.
T Consensus 190 ~al~~~l~---~~SalfrhEvAfVfGQl-----------~s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~--e~~~ 253 (289)
T KOG0567|consen 190 NALIDGLA---DDSALFRHEVAFVFGQL-----------QSPAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD--EDCV 253 (289)
T ss_pred HHHHHhcc---cchHHHHHHHHHHHhhc-----------cchhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC--HHHH
Confidence 55555555 44556677777777766 4667899999965544 356788889999999974 4554
Q ss_pred HHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHHhhc
Q 015728 356 EEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAEELK 399 (401)
Q Consensus 356 ~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e~~~ 399 (401)
+.|...+.++ .+.+++.+.-+|.++....+.++.
T Consensus 254 ---------~vL~e~~~D~-~~vv~esc~valdm~eyens~~~e 287 (289)
T KOG0567|consen 254 ---------EVLKEYLGDE-ERVVRESCEVALDMLEYENSKEFE 287 (289)
T ss_pred ---------HHHHHHcCCc-HHHHHHHHHHHHHHHHHhcccccc
Confidence 4566777666 888999999998887664444443
No 122
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.09 E-value=0.038 Score=55.60 Aligned_cols=188 Identities=13% Similarity=0.092 Sum_probs=112.2
Q ss_pred hHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cCCchhHHHHHHHHHHhcCCCchhH
Q 015728 190 MESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-HHNSEASDAGVRAFSALCSTETNRK 268 (401)
Q Consensus 190 i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~a~~aL~~Ls~~~~n~~ 268 (401)
+|+++.-+.......+..++..|..+ +... ...-.... ..+||.|...| +..+++++++-.+|.+++..-+|..
T Consensus 256 lpsll~~l~~~kWrtK~aslellg~m-~~~a---p~qLs~~l-p~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d 330 (569)
T KOG1242|consen 256 LPSLLGSLLEAKWRTKMASLELLGAM-ADCA---PKQLSLCL-PDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD 330 (569)
T ss_pred hhhhHHHHHHHhhhhHHHHHHHHHHH-HHhc---hHHHHHHH-hHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH
Confidence 45555544444668888999999888 5432 11111112 36888888888 6678899999999999998777766
Q ss_pred HHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHH---hCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHH
Q 015728 269 TLVQEGAINGLIAYISNALTRERSLAAIAMARIEQL---LAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLM 345 (401)
Q Consensus 269 ~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~L---a~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~ 345 (401)
| + -.+|.|++-+. +++..+ ..++..|..- +.-.+--..+ .+|.|-+. ++..+...++.++.+.+
T Consensus 331 -I-~-~~ip~Lld~l~---dp~~~~-~e~~~~L~~ttFV~~V~~psLal-----mvpiL~R~-l~eRst~~kr~t~~Iid 397 (569)
T KOG1242|consen 331 -I-Q-KIIPTLLDALA---DPSCYT-PECLDSLGATTFVAEVDAPSLAL-----MVPILKRG-LAERSTSIKRKTAIIID 397 (569)
T ss_pred -H-H-HHHHHHHHHhc---Ccccch-HHHHHhhcceeeeeeecchhHHH-----HHHHHHHH-HhhccchhhhhHHHHHH
Confidence 2 2 16788888887 344222 2233322211 1111111111 13444443 33344467899999999
Q ss_pred HHhcCCHHH-HHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHH
Q 015728 346 MICCDSLQA-REEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAE 396 (401)
Q Consensus 346 ~l~~~~~~~-~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e 396 (401)
|+|+.-++- .-.-.---.+|-|-..+... .|++|.-|+.+|.-+.+..+|
T Consensus 398 Nm~~LveDp~~lapfl~~Llp~lk~~~~d~-~PEvR~vaarAL~~l~e~~g~ 448 (569)
T KOG1242|consen 398 NMCKLVEDPKDLAPFLPSLLPGLKENLDDA-VPEVRAVAARALGALLERLGE 448 (569)
T ss_pred HHHHhhcCHHHHhhhHHHHhhHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHh
Confidence 999875221 11112233445555555555 899999999999555553544
No 123
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.04 E-value=0.083 Score=53.21 Aligned_cols=259 Identities=13% Similarity=0.061 Sum_probs=145.8
Q ss_pred hhhHHHHHHhhhhh-hcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHH-HHHhccCCcccchhhhHHHHHHHHHHH
Q 015728 92 IDSLSTLKHSLQSH-EATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLL-LKQLFGKAESKFSQVYVQFVEESLSCV 169 (401)
Q Consensus 92 ~~~~~~l~~~l~~~-~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~L-v~lL~s~~~~~~~~~~~~~~~~a~~~~ 169 (401)
+..+..+-..+.+. +.....|..|....+.+.+.-+...-.. .+|.+ -.++...+. -...++. +
T Consensus 212 Pyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~----llpsll~~l~~~kWr---------tK~asle-l 277 (569)
T KOG1242|consen 212 PYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKL----LLPSLLGSLLEAKWR---------TKMASLE-L 277 (569)
T ss_pred chHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhH----hhhhhHHHHHHHhhh---------hHHHHHH-H
Confidence 34455554445433 4567778888888888876655432222 13333 333333222 3456666 7
Q ss_pred HHhhcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHccCCchh
Q 015728 170 QKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHHNSEA 249 (401)
Q Consensus 170 L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~ 249 (401)
+..+....+...... .+..||.+.+.|-...+++|..+..+|.++ .... +|.. | .-.+|.|+.-+.+...-
T Consensus 278 lg~m~~~ap~qLs~~-lp~iiP~lsevl~DT~~evr~a~~~~l~~~-~svi---dN~d-I---~~~ip~Lld~l~dp~~~ 348 (569)
T KOG1242|consen 278 LGAMADCAPKQLSLC-LPDLIPVLSEVLWDTKPEVRKAGIETLLKF-GSVI---DNPD-I---QKIIPTLLDALADPSCY 348 (569)
T ss_pred HHHHHHhchHHHHHH-HhHhhHHHHHHHccCCHHHHHHHHHHHHHH-HHhh---ccHH-H---HHHHHHHHHHhcCcccc
Confidence 777765544444333 467899999999989999999999999999 5444 3344 2 24578888887433222
Q ss_pred HHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhh-ccccchHHHHHHHHHHHHhCCHhhHHHHHhC-CCcHHHHHHH
Q 015728 250 SDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNA-LTRERSLAAIAMARIEQLLAIENSKDALINN-PNGVYALVKM 327 (401)
Q Consensus 250 ~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~-~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~-~g~i~~Lv~~ 327 (401)
...+...|..-+... .|++-.+..++.+|... ...+...+..++.+..|++.--++...+... ...+|.|=+
T Consensus 349 ~~e~~~~L~~ttFV~-----~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~- 422 (569)
T KOG1242|consen 349 TPECLDSLGATTFVA-----EVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKE- 422 (569)
T ss_pred hHHHHHhhcceeeee-----eecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHH-
Confidence 334444444333211 12334444555555431 1345567788888999998755544444311 122333333
Q ss_pred HHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHH
Q 015728 328 VFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKA 383 (401)
Q Consensus 328 l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A 383 (401)
.+.+..|+++..+.++|..+-...++.. ..+.+|.+.+.+.+..+..-+.-+
T Consensus 423 ~~~d~~PEvR~vaarAL~~l~e~~g~~~----f~d~~p~l~e~~~~~k~~~~~~g~ 474 (569)
T KOG1242|consen 423 NLDDAVPEVRAVAARALGALLERLGEVS----FDDLIPELSETLTSEKSLVDRSGA 474 (569)
T ss_pred HhcCCChhHHHHHHHHHHHHHHHHHhhc----ccccccHHHHhhccchhhhhhHHH
Confidence 2333468899999999977754322211 145555555555444333333333
No 124
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.00073 Score=59.99 Aligned_cols=76 Identities=30% Similarity=0.468 Sum_probs=68.6
Q ss_pred CCCCCCcccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCCcHHHHHHHHHHHHhCCC
Q 015728 6 QMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLRHLINQWLQMGGG 81 (401)
Q Consensus 6 ~~~~~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~n~~l~~~i~~~~~~~~~ 81 (401)
..++|+.++|.|..++|++||..|.|-+|.+.-|.+.+..-...=|+.+.+++...+.+|..+...|..|+..|+-
T Consensus 205 ~rEvpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN~alkevIa~fl~~n~w 280 (284)
T KOG4642|consen 205 KREVPDYLCGKITLELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLIPNLALKEVIAAFLKENEW 280 (284)
T ss_pred cccccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccCCHHhhccchHHHHHHHHHHHhccc
Confidence 4567889999999999999999999999999999999887455689999999999999999999999999998853
No 125
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.00 E-value=0.00031 Score=67.13 Aligned_cols=50 Identities=22% Similarity=0.505 Sum_probs=40.4
Q ss_pred CCCCCCcccccccccccCCce----EcCccccccHHhHHHHHHcCCCCCCCCcccCC
Q 015728 6 QMTIPHLFRCPISLDLFTDPV----TLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLH 58 (401)
Q Consensus 6 ~~~~~~~~~C~iC~~~~~~Pv----~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~ 58 (401)
+..+.+..+||+|++-|-+-+ ++.|.|+|-..|+..|+. .+||+||....
T Consensus 169 ~~~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~---~scpvcR~~q~ 222 (493)
T KOG0804|consen 169 PTGLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD---SSCPVCRYCQS 222 (493)
T ss_pred CCCcccCCCcchhHhhcCccccceeeeecccccchHHHhhccc---CcChhhhhhcC
Confidence 344556779999999998776 357999999999999976 46999987655
No 126
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.98 E-value=0.095 Score=53.98 Aligned_cols=269 Identities=10% Similarity=0.081 Sum_probs=172.4
Q ss_pred hhhhcChHHHHHHHHHHHHHHhcC------chhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCC
Q 015728 103 QSHEATLETKLQIVQKIHVVLRES------PPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVG 176 (401)
Q Consensus 103 ~~~~~~~~~~~~a~~~L~~l~~~~------~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~ 176 (401)
+..+++...|+.|+..|.+-.... +..|..|. ........+++ .+++..|..|+...++..
T Consensus 182 rk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iM-----qvvcEatq~~d--------~~i~~aa~~ClvkIm~Ly 248 (859)
T KOG1241|consen 182 RKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIM-----QVVCEATQSPD--------EEIQVAAFQCLVKIMSLY 248 (859)
T ss_pred cccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceee-----eeeeecccCCc--------HHHHHHHHHHHHHHHHHH
Confidence 344567889999999999887442 23344442 23333334444 569999999888888766
Q ss_pred chhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchh----------hhhh------hhccchHHHHHHH
Q 015728 177 ETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETK----------ELCC------KLGKDDRLLREII 240 (401)
Q Consensus 177 ~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~----------~~~~------~i~~~~g~i~~Lv 240 (401)
.+....-+ +.......+..+++.++++...+...=.++ +.- +.| .+.. .-....+++|.|+
T Consensus 249 Y~~m~~yM-~~alfaitl~amks~~deValQaiEFWsti-ceE-EiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll 325 (859)
T KOG1241|consen 249 YEFMEPYM-EQALFAITLAAMKSDNDEVALQAIEFWSTI-CEE-EIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLL 325 (859)
T ss_pred HHHHHHHH-HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHH
Confidence 55444445 334566667788899999888888776655 321 010 0000 0011236778888
Q ss_pred HHc-c-C-C---c--hhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhh-ccccchHHHHHHHHHHHHhCCHh-h
Q 015728 241 SLV-H-H-N---S--EASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNA-LTRERSLAAIAMARIEQLLAIEN-S 310 (401)
Q Consensus 241 ~lL-~-~-~---~--~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~-~~~~~~~~~~a~~~L~~La~~~~-~ 310 (401)
.+| + + + . ...++|..+|.-++. .+.-.+||+.+..+..+ .+++-.-++.|+.++...-..++ .
T Consensus 326 ~~L~kqde~~d~DdWnp~kAAg~CL~l~A~-------~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~ 398 (859)
T KOG1241|consen 326 ELLTKQDEDDDDDDWNPAKAAGVCLMLFAQ-------CVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPD 398 (859)
T ss_pred HHHHhCCCCcccccCcHHHHHHHHHHHHHH-------HhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchh
Confidence 888 3 1 1 1 255666666665543 33445666777776533 24566667777777776666554 3
Q ss_pred HHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHH-HHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 015728 311 KDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQ-AREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKL 389 (401)
Q Consensus 311 ~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~ 389 (401)
+..-. -.+++|.++.+ ..+++--+++.+.+.|..++..-++ .-.+..-.+.++.|+.=|.+ .|++-.++.|++.-
T Consensus 399 ~Lt~i-V~qalp~ii~l-m~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D--ePrva~N~CWAf~~ 474 (859)
T KOG1241|consen 399 KLTPI-VIQALPSIINL-MSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND--EPRVASNVCWAFIS 474 (859)
T ss_pred hhhHH-HhhhhHHHHHH-hcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh--CchHHHHHHHHHHH
Confidence 33332 45899999995 4566667889999999999987653 23344455666666665533 67999999999999
Q ss_pred HHHhhHHhh
Q 015728 390 LRSKWAEEL 398 (401)
Q Consensus 390 l~~~~~e~~ 398 (401)
|.++.+|..
T Consensus 475 Laea~~eA~ 483 (859)
T KOG1241|consen 475 LAEAAYEAA 483 (859)
T ss_pred HHHHHHHhc
Confidence 999888753
No 127
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.00063 Score=62.56 Aligned_cols=55 Identities=22% Similarity=0.374 Sum_probs=44.7
Q ss_pred CccCCCCCCcccccccccccCCceEcC-ccccccHHhHHHHHHcCCCCCCCCcccCC
Q 015728 3 EDRQMTIPHLFRCPISLDLFTDPVTLC-TGQTYDRSSIEKWLAAGNLTCPVTMQTLH 58 (401)
Q Consensus 3 ~~~~~~~~~~~~C~iC~~~~~~Pv~~~-Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~ 58 (401)
++.+...++.-.||+|..-..+|..+. .|..||..|+..+.. ....||+++.+..
T Consensus 291 se~e~l~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~-~~~~CPVT~~p~~ 346 (357)
T KOG0826|consen 291 SESELLPPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVV-NYGHCPVTGYPAS 346 (357)
T ss_pred cccccCCCccccChhHHhccCCCceEEecceEEeHHHHHHHHH-hcCCCCccCCcch
Confidence 334444566789999999999998875 799999999999998 6788999877654
No 128
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=96.96 E-value=0.00029 Score=66.87 Aligned_cols=36 Identities=14% Similarity=0.412 Sum_probs=32.5
Q ss_pred CCcccccccccccCCceEcCccccccHHhHHHHHHc
Q 015728 10 PHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAA 45 (401)
Q Consensus 10 ~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~ 45 (401)
+++++||||...|++|++++|+|+.|+.|-.....+
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHNLCQACARNILVQ 37 (699)
T ss_pred cccccCceehhhccCceEeecccHHHHHHHHhhccc
Confidence 578999999999999999999999999998766553
No 129
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.29 Score=45.89 Aligned_cols=277 Identities=14% Similarity=0.100 Sum_probs=156.2
Q ss_pred hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHH--HHHhccCCcccchhhhHHHHHHHHHHHH
Q 015728 93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLL--LKQLFGKAESKFSQVYVQFVEESLSCVQ 170 (401)
Q Consensus 93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~L--v~lL~s~~~~~~~~~~~~~~~~a~~~~L 170 (401)
+....+...+. +++.+.-..|...|..++.... .-..|.++.....+ +++--..+ ..++...+. ++
T Consensus 128 eilklildcIg--geddeVAkAAiesikrialfpa-aleaiFeSellDdlhlrnlaakcn--------diaRvRVle-LI 195 (524)
T KOG4413|consen 128 EILKLILDCIG--GEDDEVAKAAIESIKRIALFPA-ALEAIFESELLDDLHLRNLAAKCN--------DIARVRVLE-LI 195 (524)
T ss_pred hHHHHHHHHHc--CCcHHHHHHHHHHHHHHHhcHH-HHHHhcccccCChHHHhHHHhhhh--------hHHHHHHHH-HH
Confidence 44444444443 3456677888888888887654 44455555444333 22221111 224444555 33
Q ss_pred HhhcCCchhhhhhcccCCchHHHHHHhhc-CCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHccC---C
Q 015728 171 KLLLVGETESLNLLNEESKMESFIVLFEH-GSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHH---N 246 (401)
Q Consensus 171 ~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~-~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~---~ 246 (401)
..+..-......-....|.+..|..-|+. .+.-++.++......| .... ..++.+.. .|.|..+..++.+ +
T Consensus 196 ieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteL-aete---HgreflaQ-eglIdlicnIIsGadsd 270 (524)
T KOG4413|consen 196 IEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTEL-AETE---HGREFLAQ-EGLIDLICNIISGADSD 270 (524)
T ss_pred HHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHH-HHHh---hhhhhcch-hhHHHHHHHHhhCCCCC
Confidence 33332233333344467878777777754 3555677777777778 5443 66777766 4999999888843 3
Q ss_pred chhHHHHHHHHH----HhcCCCchhHHHHhc--CcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCC-
Q 015728 247 SEASDAGVRAFS----ALCSTETNRKTLVQE--GAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPN- 319 (401)
Q Consensus 247 ~~~~~~a~~aL~----~Ls~~~~n~~~iv~~--G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g- 319 (401)
+-.+-.+..-.. +....+-.-.+++++ -+|....+.+. ..+++.++.|..++..|-++.+|...+. ..|
T Consensus 271 PfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiE---mnDpdaieaAiDalGilGSnteGadlll-kTgp 346 (524)
T KOG4413|consen 271 PFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIE---MNDPDAIEAAIDALGILGSNTEGADLLL-KTGP 346 (524)
T ss_pred cHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhh---cCCchHHHHHHHHHHhccCCcchhHHHh-ccCC
Confidence 323333333333 332222222233331 13334444555 5678899999999999999999998886 545
Q ss_pred -cHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCH-------------HHHHHHHHc-------CcHHHHHHHhhcCCCHH
Q 015728 320 -GVYALVKMVFRVSDHEGSENAINSLMMICCDSL-------------QAREEAICA-------GVLTQLLLLLQSQCSNR 378 (401)
Q Consensus 320 -~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~-------------~~~~~~~~~-------g~v~~L~~ll~~~~~~~ 378 (401)
....++-....-+...-++.++.+|.+|+..-. ..+..+.++ .-...++.+++.+ .++
T Consensus 347 paaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQp-fpE 425 (524)
T KOG4413|consen 347 PAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQP-FPE 425 (524)
T ss_pred hHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCC-Chh
Confidence 234444334444445678889999999875421 122222221 1223345556555 677
Q ss_pred HHHHHHHHHHHHH
Q 015728 379 TKTKARMLLKLLR 391 (401)
Q Consensus 379 ~~~~A~~~L~~l~ 391 (401)
.+=.|.+.+.-+.
T Consensus 426 ihcAalktfTAia 438 (524)
T KOG4413|consen 426 IHCAALKTFTAIA 438 (524)
T ss_pred hHHHHHHHHHHHH
Confidence 6666666555544
No 130
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.87 E-value=0.32 Score=50.02 Aligned_cols=172 Identities=16% Similarity=0.160 Sum_probs=109.5
Q ss_pred hcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcc
Q 015728 106 EATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLN 185 (401)
Q Consensus 106 ~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~ 185 (401)
+.++..+-+|+..++.|++.+|.|--.+ .|.+.+++...+. ..+.-..+. +...|+--.+...+
T Consensus 192 DpDp~V~SAAV~VICELArKnPknyL~L-----AP~ffkllttSsN-------NWmLIKiiK-LF~aLtplEPRLgK--- 255 (877)
T KOG1059|consen 192 DPDPSVVSAAVSVICELARKNPQNYLQL-----APLFYKLLVTSSN-------NWVLIKLLK-LFAALTPLEPRLGK--- 255 (877)
T ss_pred CCCchHHHHHHHHHHHHHhhCCcccccc-----cHHHHHHHhccCC-------CeehHHHHH-HHhhccccCchhhh---
Confidence 4578899999999999999999887665 6888888866554 356667777 77777644433222
Q ss_pred cCCchHHHHHHhhcCCH-HHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cCCchhHHHHHHHHHHhcCC
Q 015728 186 EESKMESFIVLFEHGSC-SIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-HHNSEASDAGVRAFSALCST 263 (401)
Q Consensus 186 ~~g~i~~Lv~~L~~~~~-~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~a~~aL~~Ls~~ 263 (401)
-.++++..++.+... .....+..++... +......+.-..+ .-.++.|-.++ ++|+-++--++.|++.+...
T Consensus 256 --KLieplt~li~sT~AmSLlYECvNTVVa~-s~s~g~~d~~asi---qLCvqKLr~fiedsDqNLKYlgLlam~KI~kt 329 (877)
T KOG1059|consen 256 --KLIEPITELMESTVAMSLLYECVNTVVAV-SMSSGMSDHSASI---QLCVQKLRIFIEDSDQNLKYLGLLAMSKILKT 329 (877)
T ss_pred --hhhhHHHHHHHhhHHHHHHHHHHHHheee-hhccCCCCcHHHH---HHHHHHHhhhhhcCCccHHHHHHHHHHHHhhh
Confidence 247888888876533 3444444443322 2211100112222 12455666666 45566888888888888843
Q ss_pred CchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhC
Q 015728 264 ETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLA 306 (401)
Q Consensus 264 ~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~ 306 (401)
+. ..|++ --..+++.|. +.++.++-.|+..|.-+..
T Consensus 330 Hp---~~Vqa-~kdlIlrcL~---DkD~SIRlrALdLl~gmVs 365 (877)
T KOG1059|consen 330 HP---KAVQA-HKDLILRCLD---DKDESIRLRALDLLYGMVS 365 (877)
T ss_pred CH---HHHHH-hHHHHHHHhc---cCCchhHHHHHHHHHHHhh
Confidence 32 11211 2345788898 7899999999999998864
No 131
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.83 E-value=0.051 Score=57.73 Aligned_cols=205 Identities=12% Similarity=0.103 Sum_probs=141.5
Q ss_pred cCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHccC--C--chhHHHHHHHHHHhc
Q 015728 186 EESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHH--N--SEASDAGVRAFSALC 261 (401)
Q Consensus 186 ~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~--~--~~~~~~a~~aL~~Ls 261 (401)
.-|..|.++++|++...+.|..-+.+=..|.+.++ .....+++..| -.-.+..|.+ . .+.+--|+-+|..+.
T Consensus 510 sVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~---SCQ~dLvKe~g-~~YF~~vL~~~~~~~~EqrtmaAFVLAviv 585 (1387)
T KOG1517|consen 510 SVGIFPYVLKLLQSSARELRPILVFIWAKILAVDP---SCQADLVKENG-YKYFLQVLDPSQAIPPEQRTMAAFVLAVIV 585 (1387)
T ss_pred ccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCc---hhHHHHHhccC-ceeEEEEecCcCCCCHHHHHHHHHHHHHHH
Confidence 45889999999999999999888877777767775 55555555433 2445555633 2 356667777787887
Q ss_pred C-CCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHH
Q 015728 262 S-TETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENA 340 (401)
Q Consensus 262 ~-~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a 340 (401)
. .+-.++...+.+.|..-+++|.. +..+-+++=.+-.|..|=.+.+..+....+.++...|+. +++++-++++-.|
T Consensus 586 ~nf~lGQ~acl~~~li~iCle~lnd--~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~-~LsD~vpEVRaAA 662 (1387)
T KOG1517|consen 586 RNFKLGQKACLNGNLIGICLEHLND--DPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLIL-LLSDPVPEVRAAA 662 (1387)
T ss_pred cccchhHHHhccccHHHHHHHHhcC--CccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHH-HhcCccHHHHHHH
Confidence 4 55678888999999999999983 234556666666777777776555555568899999999 6788888999999
Q ss_pred HHHHHHHhcCC----HHH---H--------HHHHHcCcHH----HHHHHhhcCCCHHHHHHHHHHHHHHHHhhHHhh
Q 015728 341 INSLMMICCDS----LQA---R--------EEAICAGVLT----QLLLLLQSQCSNRTKTKARMLLKLLRSKWAEEL 398 (401)
Q Consensus 341 ~~~L~~l~~~~----~~~---~--------~~~~~~g~v~----~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e~~ 398 (401)
+.+|..+-.+. ++. + +.+.-+..+. .++.+++.+ ++-+|...+-.|--+..-+--++
T Consensus 663 VFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdg-splvr~ev~v~ls~~~~g~~~~~ 738 (1387)
T KOG1517|consen 663 VFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDG-SPLVRTEVVVALSHFVVGYVSHL 738 (1387)
T ss_pred HHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhcc-chHHHHHHHHHHHHHHHhhHHHh
Confidence 99998887642 111 1 1122233333 667777777 88888777666665554333333
No 132
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.82 E-value=0.036 Score=46.70 Aligned_cols=125 Identities=17% Similarity=0.126 Sum_probs=98.3
Q ss_pred HHHHhcCcHHHHHHHHHhhcccc-----chHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcC-ChhHHHHHH
Q 015728 268 KTLVQEGAINGLIAYISNALTRE-----RSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVS-DHEGSENAI 341 (401)
Q Consensus 268 ~~iv~~G~v~~Lv~lL~~~~~~~-----~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~-~~~~~~~a~ 341 (401)
..++..|++..|++++.+ +.. .+....++.++..|-.++.-.+... ....|...+..+-... +..+.+.|+
T Consensus 5 ~EFI~~~Gl~~L~~~iE~--g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l-~~~FI~Kia~~Vn~~~~d~~i~q~sL 81 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEE--GTEIQPCKGEILAYALTAFVELMEHGIVSWDTL-SDSFIKKIASYVNSSAMDASILQRSL 81 (160)
T ss_pred HHHHhccCHHHHHHHHHc--CCccCcchHHHHHHHHHHHHHHHhcCcCchhhc-cHHHHHHHHHHHccccccchHHHHHH
Confidence 567889999999999995 221 3667778888888888776566665 6677888888443332 567899999
Q ss_pred HHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHH
Q 015728 342 NSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAE 396 (401)
Q Consensus 342 ~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e 396 (401)
.+|-++..+++..-..+.++=-++.|+..|+.. ++..+.+|.+++.-|-..-++
T Consensus 82 aILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~-~~~iq~naiaLinAL~~kA~~ 135 (160)
T PF11841_consen 82 AILESIVLNSPKLYQLVEQEVTLESLIRHLQVS-NQEIQTNAIALINALFLKADD 135 (160)
T ss_pred HHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcC-CHHHHHHHHHHHHHHHhcCCh
Confidence 999999999887777788888899999999997 889999999998876553443
No 133
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.79 E-value=0.085 Score=53.60 Aligned_cols=273 Identities=14% Similarity=0.188 Sum_probs=165.8
Q ss_pred hhhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchh--hhHHHh--cCChHHHHHHhccCCcccchhhhHHHHHHHHH
Q 015728 92 IDSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPA--SNCLIQ--LGFLPLLLKQLFGKAESKFSQVYVQFVEESLS 167 (401)
Q Consensus 92 ~~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~--r~~i~~--~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~ 167 (401)
++.++.|-.+|.+.+. ..+..|...|.+.+.+++.. .....+ .=.||.++.+.++++ ++++.+|+.
T Consensus 127 pelLp~L~~~L~s~d~--n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~s--------pkiRs~A~~ 196 (885)
T KOG2023|consen 127 PELLPQLCELLDSPDY--NTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPS--------PKIRSHAVG 196 (885)
T ss_pred hhHHHHHHHHhcCCcc--cccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCC--------hhHHHHHHh
Confidence 4777778787765543 36778999999999887752 222211 237899999998886 569999999
Q ss_pred HHHHhhcCCchhhhhhccc-CCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-C
Q 015728 168 CVQKLLLVGETESLNLLNE-ESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-H 245 (401)
Q Consensus 168 ~~L~~l~~~~~~~~~~v~~-~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~ 245 (401)
|+=..+-.... .+... ...+..+..+-...++++|.+.+.++..|.-... -+.+-.-.++++.++..-. .
T Consensus 197 cvNq~i~~~~q---al~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~-----dkl~phl~~IveyML~~tqd~ 268 (885)
T KOG2023|consen 197 CVNQFIIIQTQ---ALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRP-----DKLVPHLDNIVEYMLQRTQDV 268 (885)
T ss_pred hhhheeecCcH---HHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcH-----HhcccchHHHHHHHHHHccCc
Confidence 55443332221 12211 1245555555566789999999998888733322 1122222356666666654 3
Q ss_pred CchhHHHHHHHHHHhcCCCchhHHHHh--cCcHHHHHHH----------HHhhccc------------------------
Q 015728 246 NSEASDAGVRAFSALCSTETNRKTLVQ--EGAINGLIAY----------ISNALTR------------------------ 289 (401)
Q Consensus 246 ~~~~~~~a~~aL~~Ls~~~~n~~~iv~--~G~v~~Lv~l----------L~~~~~~------------------------ 289 (401)
+..+...|......++..+--+..+.. ...||.|+.= |.+. ..
T Consensus 269 dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~-eeD~~vpDreeDIkPRfhksk~~~~~ 347 (885)
T KOG2023|consen 269 DENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNN-EEDESVPDREEDIKPRFHKSKEHGNG 347 (885)
T ss_pred chhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCc-cccccCCchhhhccchhhhchhccCc
Confidence 555888899999999987743333333 3577777653 2210 00
Q ss_pred --------c------------chHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhc
Q 015728 290 --------E------------RSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICC 349 (401)
Q Consensus 290 --------~------------~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~ 349 (401)
+ =.+++-++++|..|+.- -+..+. ..+-++++.-+.+.+=.++|.++-+|..|+.
T Consensus 348 ~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanv--f~~elL---~~l~PlLk~~L~~~~W~vrEagvLAlGAIAE 422 (885)
T KOG2023|consen 348 EDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANV--FGDELL---PILLPLLKEHLSSEEWKVREAGVLALGAIAE 422 (885)
T ss_pred cccccccccccccccccccccccHhhccHHHHHHHHHh--hHHHHH---HHHHHHHHHHcCcchhhhhhhhHHHHHHHHH
Confidence 0 01233344445444421 122222 1233334434444455689999999999985
Q ss_pred CCHHHHHHHHHc--CcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728 350 DSLQAREEAICA--GVLTQLLLLLQSQCSNRTKTKARMLLKLLRS 392 (401)
Q Consensus 350 ~~~~~~~~~~~~--g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~ 392 (401)
+ +..-++.. -.+|.|+.+|.+. .+-+|..+.|.|...++
T Consensus 423 G---cM~g~~p~LpeLip~l~~~L~DK-kplVRsITCWTLsRys~ 463 (885)
T KOG2023|consen 423 G---CMQGFVPHLPELIPFLLSLLDDK-KPLVRSITCWTLSRYSK 463 (885)
T ss_pred H---HhhhcccchHHHHHHHHHHhccC-ccceeeeeeeeHhhhhh
Confidence 4 33334332 3678889999776 88999999999999888
No 134
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.73 E-value=0.19 Score=53.62 Aligned_cols=183 Identities=15% Similarity=0.151 Sum_probs=120.2
Q ss_pred hHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCC
Q 015728 109 LETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEES 188 (401)
Q Consensus 109 ~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g 188 (401)
.-.+..|+..|.+...-.+=.-..-..-|..|-.++||.|+..+ ++---+--=-..|+.++.-..+++. .+
T Consensus 484 QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~E--------LrpiLVFIWAKILAvD~SCQ~dLvK-e~ 554 (1387)
T KOG1517|consen 484 QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARE--------LRPILVFIWAKILAVDPSCQADLVK-EN 554 (1387)
T ss_pred HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHh--------hhhhHHHHHHHHHhcCchhHHHHHh-cc
Confidence 34555566555555544432222222469999999999988643 3321111011356666555566664 45
Q ss_pred chHHHHHHhhc-C--CHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHccCC-ch-hHHHHHHHHHHhcC-
Q 015728 189 KMESFIVLFEH-G--SCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHHN-SE-ASDAGVRAFSALCS- 262 (401)
Q Consensus 189 ~i~~Lv~~L~~-~--~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~-~~-~~~~a~~aL~~Ls~- 262 (401)
+-..++.+|.. + +++-|.-||.+|..++.... ...+.- -..+.|..-...|.++ .. .+.+.+-+|..|=.
T Consensus 555 g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~---lGQ~ac-l~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d 630 (1387)
T KOG1517|consen 555 GYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFK---LGQKAC-LNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWED 630 (1387)
T ss_pred CceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccc---hhHHHh-ccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhh
Confidence 55566667765 3 34777888889988855443 222222 2346667666677443 23 88999999999875
Q ss_pred CCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCC
Q 015728 263 TETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAI 307 (401)
Q Consensus 263 ~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~ 307 (401)
.+++|..=++.++.+-|+.+|+ ++.++++..|+-+|..+-.+
T Consensus 631 ~~~Arw~G~r~~AhekL~~~Ls---D~vpEVRaAAVFALgtfl~~ 672 (1387)
T KOG1517|consen 631 YDEARWSGRRDNAHEKLILLLS---DPVPEVRAAAVFALGTFLSN 672 (1387)
T ss_pred cchhhhccccccHHHHHHHHhc---CccHHHHHHHHHHHHHHhcc
Confidence 5667877789999999999999 78899999999999988764
No 135
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=96.70 E-value=0.19 Score=46.87 Aligned_cols=225 Identities=14% Similarity=0.096 Sum_probs=145.9
Q ss_pred HHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhhc--CCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHH
Q 015728 161 FVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEH--GSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLRE 238 (401)
Q Consensus 161 ~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~--~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~ 238 (401)
.+.-|+. .+.++....+....+..+...-..+++.+++ |..+.|.+....++.+ +..+ +..+.|-.-...|.-
T Consensus 165 Trlfav~-cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~l-Tf~~---~~aqdi~K~~dli~d 239 (432)
T COG5231 165 TRLFAVS-CLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWIL-TFSK---ECAQDIDKMDDLIND 239 (432)
T ss_pred HHHHHHH-HHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHH-hcCH---HHHHHHHHHHHHHHH
Confidence 4555666 6677776655444334455566778888875 4678999999999999 7665 666555444467788
Q ss_pred HHHHccC--CchhHHHHHHHHHHhcC--CCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHH---HHH----HHhC-
Q 015728 239 IISLVHH--NSEASDAGVRAFSALCS--TETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMA---RIE----QLLA- 306 (401)
Q Consensus 239 Lv~lL~~--~~~~~~~a~~aL~~Ls~--~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~---~L~----~La~- 306 (401)
|+.+.+. ...+.+-....+.|++. ..+....+.-.|-+.+-+++|..+.-++++++...-. .|. .|+.
T Consensus 240 li~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~f 319 (432)
T COG5231 240 LIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIF 319 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 8888854 34588888888999885 2245566666676777788876532344444433211 111 1111
Q ss_pred -----------------------CHhhHHHHHh-CCCcHHHHHHHHHhcCChh-HHHHHHHHHHHHhcCCHHHHHHHHHc
Q 015728 307 -----------------------IENSKDALIN-NPNGVYALVKMVFRVSDHE-GSENAINSLMMICCDSLQAREEAICA 361 (401)
Q Consensus 307 -----------------------~~~~~~~~~~-~~g~i~~Lv~~l~~~~~~~-~~~~a~~~L~~l~~~~~~~~~~~~~~ 361 (401)
...|-..+.. +...+..|.+ +++...+. .-..|..=+..+....++.+..+..-
T Consensus 320 D~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~-~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Ky 398 (432)
T COG5231 320 DNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKK-YLQSNNPNTWICVACSDIFQLVRASPEINAVLSKY 398 (432)
T ss_pred HHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHH-HHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHh
Confidence 1112222221 2235666777 45544332 44456666677777778999888899
Q ss_pred CcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728 362 GVLTQLLLLLQSQCSNRTKTKARMLLKLLRS 392 (401)
Q Consensus 362 g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~ 392 (401)
|+=+.++.||.++ ++++|-.|..+++.+-.
T Consensus 399 g~k~~im~L~nh~-d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 399 GVKEIIMNLINHD-DDDVKFEALQALQTCIS 428 (432)
T ss_pred hhHHHHHHHhcCC-CchhhHHHHHHHHHHHh
Confidence 9999999999988 99999999999987643
No 136
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.63 E-value=0.06 Score=53.63 Aligned_cols=255 Identities=14% Similarity=0.132 Sum_probs=159.7
Q ss_pred ChHHHHHHHHHHHHHHhcCchhhhHHHh-cCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhccc
Q 015728 108 TLETKLQIVQKIHVVLRESPPASNCLIQ-LGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNE 186 (401)
Q Consensus 108 ~~~~~~~a~~~L~~l~~~~~~~r~~i~~-~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~ 186 (401)
++..+.--+..|..+-...+ ...+.- ....+-|..+|.+.+.+ -+.+.+.++...|..+...++. +.-
T Consensus 180 n~~tR~flv~Wl~~Lds~P~--~~m~~yl~~~ldGLf~~LsD~s~e-----Vr~~~~t~l~~fL~eI~s~P~s----~d~ 248 (675)
T KOG0212|consen 180 NPMTRQFLVSWLYVLDSVPD--LEMISYLPSLLDGLFNMLSDSSDE-----VRTLTDTLLSEFLAEIRSSPSS----MDY 248 (675)
T ss_pred CchHHHHHHHHHHHHhcCCc--HHHHhcchHHHHHHHHHhcCCcHH-----HHHHHHHHHHHHHHHHhcCccc----cCc
Confidence 45566667777776655433 333322 45677788888776643 1223344444455555533321 123
Q ss_pred CCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHccCCch--hHHHHHH---HHHHhc
Q 015728 187 ESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHHNSE--ASDAGVR---AFSALC 261 (401)
Q Consensus 187 ~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~--~~~~a~~---aL~~Ls 261 (401)
...++.++.-+.++++..|..|..-|..++.... +..+.-..|++..+...++++.+ .+..+.. .|..+.
T Consensus 249 ~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g-----~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~ 323 (675)
T KOG0212|consen 249 DDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPG-----RDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLV 323 (675)
T ss_pred ccchhhccccccCCcHHHHHHHHHHHHHHhcCCC-----cchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHH
Confidence 3468888899999999999999888888755543 23333334666666776644332 2333222 234444
Q ss_pred CCCchhHHHHhcC-cHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHH
Q 015728 262 STETNRKTLVQEG-AINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENA 340 (401)
Q Consensus 262 ~~~~n~~~iv~~G-~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a 340 (401)
..+..... ++-| .|..|.+.|. ++..+.+-.++.-+..|-....|..... .....+.|++.+ .+.+..+...+
T Consensus 324 s~~~~~~~-id~~~ii~vl~~~l~---~~~~~tri~~L~Wi~~l~~~~p~ql~~h-~~~if~tLL~tL-sd~sd~vvl~~ 397 (675)
T KOG0212|consen 324 SSERLKEE-IDYGSIIEVLTKYLS---DDREETRIAVLNWIILLYHKAPGQLLVH-NDSIFLTLLKTL-SDRSDEVVLLA 397 (675)
T ss_pred hhhhhccc-cchHHHHHHHHHHhh---cchHHHHHHHHHHHHHHHhhCcchhhhh-ccHHHHHHHHhh-cCchhHHHHHH
Confidence 44443333 5544 7888888888 6778888888888888876655655554 556788888864 44455899999
Q ss_pred HHHHHHHhcCCHHHHHHHHHcCcHHHHHHH---hhcCCCHHHHHHHHHHHHHHHH
Q 015728 341 INSLMMICCDSLQAREEAICAGVLTQLLLL---LQSQCSNRTKTKARMLLKLLRS 392 (401)
Q Consensus 341 ~~~L~~l~~~~~~~~~~~~~~g~v~~L~~l---l~~~~~~~~~~~A~~~L~~l~~ 392 (401)
+.+|.++|.... .. |.++-+..| ...+ ..-.+..+.-++|+++-
T Consensus 398 L~lla~i~~s~~-~~------~~~~fl~sLL~~f~e~-~~~l~~Rg~lIIRqlC~ 444 (675)
T KOG0212|consen 398 LSLLASICSSSN-SP------NLRKFLLSLLEMFKED-TKLLEVRGNLIIRQLCL 444 (675)
T ss_pred HHHHHHHhcCcc-cc------cHHHHHHHHHHHHhhh-hHHHHhhhhHHHHHHHH
Confidence 999999998743 22 334444444 4444 55677788888888876
No 137
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.00056 Score=45.41 Aligned_cols=46 Identities=17% Similarity=0.204 Sum_probs=37.9
Q ss_pred ccccccccccCCceEcCccc-cccHHhHHHHHHcCCCCCCCCcccCC
Q 015728 13 FRCPISLDLFTDPVTLCTGQ-TYDRSSIEKWLAAGNLTCPVTMQTLH 58 (401)
Q Consensus 13 ~~C~iC~~~~~~Pv~~~Cgh-~fc~~Ci~~~~~~~~~~CP~c~~~~~ 58 (401)
-.|.||.+--.|.|..-||| ..|..|-.+.++..+..||.||.++.
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 46999998777777778999 55999998888877888999988653
No 138
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.0014 Score=62.10 Aligned_cols=49 Identities=16% Similarity=0.326 Sum_probs=39.6
Q ss_pred CCcccccccccccCCce-----E---cCccccccHHhHHHHHHcC------CCCCCCCcccCC
Q 015728 10 PHLFRCPISLDLFTDPV-----T---LCTGQTYDRSSIEKWLAAG------NLTCPVTMQTLH 58 (401)
Q Consensus 10 ~~~~~C~iC~~~~~~Pv-----~---~~Cgh~fc~~Ci~~~~~~~------~~~CP~c~~~~~ 58 (401)
-.+..|.||++...++. . .+|.|.||..||..|.... .+.||.||....
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 35889999999887766 3 4599999999999998532 478999997654
No 139
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.51 E-value=0.01 Score=46.14 Aligned_cols=68 Identities=18% Similarity=0.157 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcc
Q 015728 111 TKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLN 185 (401)
Q Consensus 111 ~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~ 185 (401)
.|..-++.|.+++..++.+...+++.|+||.+++.-.-++. +|-++|.|+. .+++|+.++.+++++|.
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~------nP~irEwai~-aiRnL~e~n~eNQ~~I~ 69 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDH------NPFIREWAIF-AIRNLCEGNPENQEFIA 69 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcc------cHHHHHHHHH-HHHHHHhCCHHHHHHHH
Confidence 35678899999999999999999999999999998655443 4889999999 89999988888877774
No 140
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.50 E-value=0.004 Score=42.64 Aligned_cols=54 Identities=17% Similarity=0.128 Sum_probs=44.6
Q ss_pred hhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHH
Q 015728 248 EASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQL 304 (401)
Q Consensus 248 ~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~L 304 (401)
.++..|+++|.+++........-....++|.|+.+|. +++..++..|+.+|.+|
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~---d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQ---DDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTT---SSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHc---CCCHHHHHHHHHHHhcC
Confidence 4788999999998876666555566779999999998 66779999999999865
No 141
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.48 E-value=0.42 Score=49.44 Aligned_cols=264 Identities=13% Similarity=0.103 Sum_probs=157.4
Q ss_pred HHHHHHHHHHHHHHhcCchhhhHHHh-cCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCC-----chhhhhh
Q 015728 110 ETKLQIVQKIHVVLRESPPASNCLIQ-LGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVG-----ETESLNL 183 (401)
Q Consensus 110 ~~~~~a~~~L~~l~~~~~~~r~~i~~-~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~-----~~~~~~~ 183 (401)
-.|..++..|...|.+-+.. ....+ +.++..++.--+.... +..++..|+.|++..|-.. ++..+..
T Consensus 145 ~~k~~slealGyice~i~pe-vl~~~sN~iLtaIv~gmrk~e~------s~~vRLaa~~aL~nsLef~~~nF~~E~ern~ 217 (859)
T KOG1241|consen 145 MVKESSLEALGYICEDIDPE-VLEQQSNDILTAIVQGMRKEET------SAAVRLAALNALYNSLEFTKANFNNEMERNY 217 (859)
T ss_pred HHHHHHHHHHHHHHccCCHH-HHHHHHhHHHHHHHhhccccCC------chhHHHHHHHHHHHHHHHHHHhhccHhhhce
Confidence 57788889999988665433 23323 3445555544433332 2558888888555544322 2222333
Q ss_pred cccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cCCchhHHHHHHHHHHhcC
Q 015728 184 LNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-HHNSEASDAGVRAFSALCS 262 (401)
Q Consensus 184 v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~a~~aL~~Ls~ 262 (401)
+ ++...+.-++++.+++..|...|..|.+..= +-....|.. .....-+.-+ +++.++...+...=.++|.
T Consensus 218 i-----MqvvcEatq~~d~~i~~aa~~ClvkIm~LyY--~~m~~yM~~--alfaitl~amks~~deValQaiEFWstice 288 (859)
T KOG1241|consen 218 I-----MQVVCEATQSPDEEIQVAAFQCLVKIMSLYY--EFMEPYMEQ--ALFAITLAAMKSDNDEVALQAIEFWSTICE 288 (859)
T ss_pred e-----eeeeeecccCCcHHHHHHHHHHHHHHHHHHH--HHHHHHHHH--HHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 3 4444566677888999988888888844321 022223322 2333333333 5566677777777666663
Q ss_pred CCch----hHHHH---------------hcCcHHHHHHHHHhhc-cc-cc--hHHHHHHHHHHHHhCCHhhHHHHHhCCC
Q 015728 263 TETN----RKTLV---------------QEGAINGLIAYISNAL-TR-ER--SLAAIAMARIEQLLAIENSKDALINNPN 319 (401)
Q Consensus 263 ~~~n----~~~iv---------------~~G~v~~Lv~lL~~~~-~~-~~--~~~~~a~~~L~~La~~~~~~~~~~~~~g 319 (401)
.+-. ...++ -.+++|.|+++|.... +. ++ .....|-..|..++.. + ...
T Consensus 289 EEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~-------~-~D~ 360 (859)
T KOG1241|consen 289 EEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQC-------V-GDD 360 (859)
T ss_pred HHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHH-------h-ccc
Confidence 1110 11111 1367899999996421 11 11 1233344444444432 1 223
Q ss_pred cHHH---HHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHH
Q 015728 320 GVYA---LVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAE 396 (401)
Q Consensus 320 ~i~~---Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e 396 (401)
.++. +++-=++..+-+-++.|+.++.++-.+....+..-+..++++.++.+|.+. +-.+|+.++|.|..+.++.||
T Consensus 361 Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~-sl~VkdTaAwtlgrI~d~l~e 439 (859)
T KOG1241|consen 361 IVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDP-SLWVKDTAAWTLGRIADFLPE 439 (859)
T ss_pred chhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCc-hhhhcchHHHHHHHHHhhchh
Confidence 3333 333223455667889999999998877666666777899999999999855 889999999999999998887
Q ss_pred hh
Q 015728 397 EL 398 (401)
Q Consensus 397 ~~ 398 (401)
-.
T Consensus 440 ~~ 441 (859)
T KOG1241|consen 440 AI 441 (859)
T ss_pred hc
Confidence 54
No 142
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.00065 Score=60.69 Aligned_cols=55 Identities=18% Similarity=0.347 Sum_probs=42.5
Q ss_pred CcccccccccccCCce----------EcCccccccHHhHHHHHHcC-CCCCCCCcccCCCCCCCCc
Q 015728 11 HLFRCPISLDLFTDPV----------TLCTGQTYDRSSIEKWLAAG-NLTCPVTMQTLHDPSIVPN 65 (401)
Q Consensus 11 ~~~~C~iC~~~~~~Pv----------~~~Cgh~fc~~Ci~~~~~~~-~~~CP~c~~~~~~~~~~~n 65 (401)
++-.|.+|.+-+...+ +++|+|.|...||.-|..-| ..+||.|++.+..+....|
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmfsn 288 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSN 288 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhccC
Confidence 5678999998776544 58999999999999997654 5789999987765443333
No 143
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.0077 Score=56.76 Aligned_cols=47 Identities=17% Similarity=0.508 Sum_probs=33.5
Q ss_pred ccccccccccCCceE---c-CccccccHHhHHHHHHcCC--CCCCCCcccCCC
Q 015728 13 FRCPISLDLFTDPVT---L-CTGQTYDRSSIEKWLAAGN--LTCPVTMQTLHD 59 (401)
Q Consensus 13 ~~C~iC~~~~~~Pv~---~-~Cgh~fc~~Ci~~~~~~~~--~~CP~c~~~~~~ 59 (401)
-.|.||.+.+-.-.- + .|||+|...|+..||...+ .+||.|+-.+..
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~ 57 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQE 57 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccc
Confidence 469999554432221 3 3999999999999999643 589999844433
No 144
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.26 E-value=0.25 Score=51.28 Aligned_cols=194 Identities=15% Similarity=0.119 Sum_probs=130.7
Q ss_pred hhhcccCCchHHHHHHhhcCCHHHHHHHHHHHH-HHHhcccchhhhhhhhccchHHHHHHHHHccCCc--hhHHHHHHHH
Q 015728 181 LNLLNEESKMESFIVLFEHGSCSIKKRLCHLVE-VIISSSHETKELCCKLGKDDRLLREIISLVHHNS--EASDAGVRAF 257 (401)
Q Consensus 181 ~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~-~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~--~~~~~a~~aL 257 (401)
+...+..|+...|+++....+.+.+-.+..+|. .+ +...+ .+...++++...++.+. ...-.++.++
T Consensus 497 ~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i-~f~~~---------~~~~v~~~~~s~~~~d~~~~en~E~L~al 566 (748)
T KOG4151|consen 497 RAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKI-DFPGE---------RSYEVVKPLDSALHNDEKGLENFEALEAL 566 (748)
T ss_pred cCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhc-CCCCC---------chhhhhhhhcchhhhhHHHHHHHHHHHHh
Confidence 344458899999999998888888888888876 44 43321 12245677777775443 3677899999
Q ss_pred HHhcC-CCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhC-CCcHHHHHHHHHhcCChh
Q 015728 258 SALCS-TETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINN-PNGVYALVKMVFRVSDHE 335 (401)
Q Consensus 258 ~~Ls~-~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~-~g~i~~Lv~~l~~~~~~~ 335 (401)
.||++ +...|.++.+.-+++-+-.++. ..++..+..++..+.||.-++--....+.+ ....+.+.. .+..-...
T Consensus 567 tnLas~s~s~r~~i~ke~~~~~ie~~~~---ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~-~~e~~~E~ 642 (748)
T KOG4151|consen 567 TNLASISESDRQKILKEKALGKIEELMT---EENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNL-NLEVADEK 642 (748)
T ss_pred hcccCcchhhHHHHHHHhcchhhHHHhh---cccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHH-HHHhhhhH
Confidence 99996 5557888888777777666666 567788999999999999887755444434 456666666 44444555
Q ss_pred HHHHHHHHHHHHhcCCHHHHH-HHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHH
Q 015728 336 GSENAINSLMMICCDSLQARE-EAICAGVLTQLLLLLQSQCSNRTKTKARMLLK 388 (401)
Q Consensus 336 ~~~~a~~~L~~l~~~~~~~~~-~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~ 388 (401)
..-.+++++..|...+.+... ..........++.+++++....+.......++
T Consensus 643 ~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln 696 (748)
T KOG4151|consen 643 FELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILN 696 (748)
T ss_pred HhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhh
Confidence 666677777767766665444 44455666777777777733344444444444
No 145
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=96.23 E-value=0.11 Score=51.52 Aligned_cols=192 Identities=10% Similarity=0.041 Sum_probs=123.3
Q ss_pred hHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCC
Q 015728 109 LETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEES 188 (401)
Q Consensus 109 ~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g 188 (401)
.-.-.+++..|..+.+.-..-|..+.+..++.+|+++|+.++-. +..-+.. ...|+-..=++.+..+.+.|
T Consensus 403 ~l~~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peim--------i~~~~t~-~icn~vv~fsnL~~~fL~~~ 473 (743)
T COG5369 403 DLDFVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIM--------IEFPDTI-DICNKVVPFSNLGAGFLEKS 473 (743)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccce--------eeccchh-hhhheeeeccchHHHHHHhh
Confidence 33445566667777766666789998999999999999886532 3444444 44444433344444555788
Q ss_pred chHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cCCchhHHHHHHHHHHhcCCCc-h
Q 015728 189 KMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-HHNSEASDAGVRAFSALCSTET-N 266 (401)
Q Consensus 189 ~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~a~~aL~~Ls~~~~-n 266 (401)
.|..++..+.+.+...|.+..|+|.+++-..+.+ +--+.+... | +..++.+. +++-.++.+....|+|+..+.. |
T Consensus 474 iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~-ekf~~Laki-g-~~kvl~~~NDpc~~vq~q~lQilrNftc~~~kn 550 (743)
T COG5369 474 IIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKN-EKFKFLAKI-G-VEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKN 550 (743)
T ss_pred HHHHHHHHhhcchhhhhhcchhhhhhhhhcCcch-hhhhhHHhc-C-HHHHHHHhcCcccccHHHHHHHHHhcccccccc
Confidence 9999999998888899999999999994444321 212333332 5 47777777 4556799999999999986332 2
Q ss_pred ---hHHHHhcC----cHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHH
Q 015728 267 ---RKTLVQEG----AINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALI 315 (401)
Q Consensus 267 ---~~~iv~~G----~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~ 315 (401)
+.-..+.. ....|++.+. ..++-..+..+-.|.+++.++++...++
T Consensus 551 Ekskdv~~K~~p~~ylfk~l~~k~e---~~np~~i~~~~yilv~~aa~d~~l~~~V 603 (743)
T COG5369 551 EKSKDVFIKATPRRYLFKRLIDKYE---ENNPMEILEGCYILVRNAACDDTLDYIV 603 (743)
T ss_pred cccceeEEecChHHHHHHHHHHHHH---hcCchhhhhhHHHHHHHHhccchHHHHH
Confidence 21112221 2334555555 3455455556777887777666554443
No 146
>PF04641 Rtf2: Rtf2 RING-finger
Probab=96.22 E-value=0.0037 Score=57.84 Aligned_cols=51 Identities=18% Similarity=0.386 Sum_probs=40.4
Q ss_pred CCcccccccccccCC--ceE--cCccccccHHhHHHHHHcCCCCCCCCcccCCCCCC
Q 015728 10 PHLFRCPISLDLFTD--PVT--LCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSI 62 (401)
Q Consensus 10 ~~~~~C~iC~~~~~~--Pv~--~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~ 62 (401)
...|.|||+...|.. +.. .+|||.|+..++.+.- ....||.|+.++...++
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~Di 165 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDI 165 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCE
Confidence 567999999999954 222 3899999999998873 34579999999987653
No 147
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.18 E-value=0.004 Score=56.60 Aligned_cols=47 Identities=21% Similarity=0.415 Sum_probs=38.4
Q ss_pred ccccccc-ccCCceE----cCccccccHHhHHHHHHcCCCCCCCCcccCCCC
Q 015728 14 RCPISLD-LFTDPVT----LCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDP 60 (401)
Q Consensus 14 ~C~iC~~-~~~~Pv~----~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~ 60 (401)
.||+|.. .+..|-. -+|||+.|.+|....|..|...||.|+..+...
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~ 53 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKN 53 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhc
Confidence 5999987 4555542 379999999999999999999999999877554
No 148
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=96.18 E-value=0.036 Score=54.86 Aligned_cols=186 Identities=9% Similarity=0.019 Sum_probs=129.3
Q ss_pred HHHHHHHhhcCCchhh--hhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHH
Q 015728 165 SLSCVQKLLLVGETES--LNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISL 242 (401)
Q Consensus 165 a~~~~L~~l~~~~~~~--~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~l 242 (401)
+++ ++...+....-. |.-+.+....++|+++|+.++..+.--+...++|++-..+ ..+..+... |+|..|+.+
T Consensus 407 ~a~-~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fs---nL~~~fL~~-~iIdvl~~~ 481 (743)
T COG5369 407 VAI-VLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFS---NLGAGFLEK-SIIDVLVNL 481 (743)
T ss_pred HHH-HHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeecc---chHHHHHHh-hHHHHHHHH
Confidence 344 444444433322 3334567789999999998777777777778888744444 566666664 899999999
Q ss_pred c-cCCchhHHHHHHHHHHhcCCCc--hhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHh----hHHHHH
Q 015728 243 V-HHNSEASDAGVRAFSALCSTET--NRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIEN----SKDALI 315 (401)
Q Consensus 243 L-~~~~~~~~~a~~aL~~Ls~~~~--n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~----~~~~~~ 315 (401)
+ +.+...+.++.|+|+.+.-+.+ .+-+....-++.-++.+.. ++.-.+++..+.+|.|+.-+.. .+..+.
T Consensus 482 v~sKDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~N---Dpc~~vq~q~lQilrNftc~~~knEkskdv~~ 558 (743)
T COG5369 482 VMSKDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTN---DPCFKVQHQVLQILRNFTCDTSKNEKSKDVFI 558 (743)
T ss_pred hhcchhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhc---CcccccHHHHHHHHHhcccccccccccceeEE
Confidence 9 4566799999999999986554 3666777788999999998 6788899999999999875321 111111
Q ss_pred hCCC----cHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 015728 316 NNPN----GVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAIC 360 (401)
Q Consensus 316 ~~~g----~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 360 (401)
... ....|++ .++..+|...+..+.+|.+++..+++.+.-+.+
T Consensus 559 -K~~p~~ylfk~l~~-k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~ 605 (743)
T COG5369 559 -KATPRRYLFKRLID-KYEENNPMEILEGCYILVRNAACDDTLDYIVQS 605 (743)
T ss_pred -ecChHHHHHHHHHH-HHHhcCchhhhhhHHHHHHHHhccchHHHHHHh
Confidence 111 2345566 345666677777899999988877776655553
No 149
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.27 Score=46.02 Aligned_cols=201 Identities=12% Similarity=0.082 Sum_probs=133.8
Q ss_pred hcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHH--HHHHc-cCCchhHHHHHHHHHH
Q 015728 183 LLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLRE--IISLV-HHNSEASDAGVRAFSA 259 (401)
Q Consensus 183 ~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~--Lv~lL-~~~~~~~~~a~~aL~~ 259 (401)
.++.+|.++.++.++-..+.++-..|...|..+ +... ..-..|-.+ ..... ++.+- +.+.-++......+..
T Consensus 123 lvvNaeilklildcIggeddeVAkAAiesikri-alfp---aaleaiFeS-ellDdlhlrnlaakcndiaRvRVleLIie 197 (524)
T KOG4413|consen 123 LVVNAEILKLILDCIGGEDDEVAKAAIESIKRI-ALFP---AALEAIFES-ELLDDLHLRNLAAKCNDIARVRVLELIIE 197 (524)
T ss_pred HHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHH-HhcH---HHHHHhccc-ccCChHHHhHHHhhhhhHHHHHHHHHHHH
Confidence 456889999999999888999998998999999 7765 434444443 22222 22222 4444577788888888
Q ss_pred hcC-CCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhc-CChhHH
Q 015728 260 LCS-TETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRV-SDHEGS 337 (401)
Q Consensus 260 Ls~-~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~-~~~~~~ 337 (401)
+++ .+......-.+|.+..|..=|.. ..+.-+..+.+.....|+....+|+.+. ++|.|..+-..+... ++|-.+
T Consensus 198 ifSiSpesaneckkSGLldlLeaElkG--teDtLVianciElvteLaeteHgrefla-QeglIdlicnIIsGadsdPfek 274 (524)
T KOG4413|consen 198 IFSISPESANECKKSGLLDLLEAELKG--TEDTLVIANCIELVTELAETEHGREFLA-QEGLIDLICNIISGADSDPFEK 274 (524)
T ss_pred HHhcCHHHHhHhhhhhHHHHHHHHhcC--CcceeehhhHHHHHHHHHHHhhhhhhcc-hhhHHHHHHHHhhCCCCCcHHH
Confidence 874 66677777789999988888883 4677788899999999999999998885 889998888844322 333333
Q ss_pred HHHHHHHHHHhcCCH--H-HHHHHHH--cCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728 338 ENAINSLMMICCDSL--Q-AREEAIC--AGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS 392 (401)
Q Consensus 338 ~~a~~~L~~l~~~~~--~-~~~~~~~--~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~ 392 (401)
-.++.....+..+.. + .-+.+.+ --+|...+++++.. ++...+.|...|.++..
T Consensus 275 fralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmn-DpdaieaAiDalGilGS 333 (524)
T KOG4413|consen 275 FRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMN-DPDAIEAAIDALGILGS 333 (524)
T ss_pred HHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcC-CchHHHHHHHHHHhccC
Confidence 334444444432210 0 0011111 12334445566666 78888888888887765
No 150
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.13 E-value=0.13 Score=43.36 Aligned_cols=123 Identities=17% Similarity=0.226 Sum_probs=94.4
Q ss_pred HHHHHHHHHcc-CC------chhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhC
Q 015728 234 RLLREIISLVH-HN------SEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLA 306 (401)
Q Consensus 234 g~i~~Lv~lL~-~~------~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~ 306 (401)
|++..|+.++. +. .+....++.++..|-.+.-.-+..++...|..++..+... ..+..+.+.|++.|..++.
T Consensus 11 ~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~-~~d~~i~q~sLaILEs~Vl 89 (160)
T PF11841_consen 11 DGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSS-AMDASILQRSLAILESIVL 89 (160)
T ss_pred cCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccc-cccchHHHHHHHHHHHHHh
Confidence 45799999993 33 2467788899988887766677788888899999999742 2367899999999999998
Q ss_pred CHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCH-HHHHHH
Q 015728 307 IENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSL-QAREEA 358 (401)
Q Consensus 307 ~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~ 358 (401)
+....-..+.++=-++.|+.. +..+++..+.+|+..+-.|....+ .-|+++
T Consensus 90 ~S~~ly~~V~~evt~~~Li~h-Lq~~~~~iq~naiaLinAL~~kA~~~~r~~i 141 (160)
T PF11841_consen 90 NSPKLYQLVEQEVTLESLIRH-LQVSNQEIQTNAIALINALFLKADDSKRKEI 141 (160)
T ss_pred CCHHHHHHHhccCCHHHHHHH-HHcCCHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 877755555677789999994 666888999999999988765533 334333
No 151
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=96.12 E-value=0.0015 Score=47.27 Aligned_cols=47 Identities=17% Similarity=0.430 Sum_probs=23.2
Q ss_pred cccccccccccC-C---ceEc----CccccccHHhHHHHHHc--C--------CCCCCCCcccCC
Q 015728 12 LFRCPISLDLFT-D---PVTL----CTGQTYDRSSIEKWLAA--G--------NLTCPVTMQTLH 58 (401)
Q Consensus 12 ~~~C~iC~~~~~-~---Pv~~----~Cgh~fc~~Ci~~~~~~--~--------~~~CP~c~~~~~ 58 (401)
+..|+||..++. + |... .|+..|...|+.+||.. + ...||.|+.+++
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 568999999765 2 4432 59999999999999984 1 135999988764
No 152
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.12 E-value=0.0036 Score=55.28 Aligned_cols=53 Identities=25% Similarity=0.488 Sum_probs=44.6
Q ss_pred CcccccccccccCCceE----cCccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCC
Q 015728 11 HLFRCPISLDLFTDPVT----LCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVP 64 (401)
Q Consensus 11 ~~~~C~iC~~~~~~Pv~----~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~ 64 (401)
..|.||+|.+.+.+.+. .+|||.||..|.++... +...||+|+.++..+++..
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir-~D~v~pv~d~plkdrdiI~ 276 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIR-KDMVDPVTDKPLKDRDIIG 276 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhcc-ccccccCCCCcCcccceEe
Confidence 56899999999987553 48999999999998877 6778999999998876543
No 153
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.07 E-value=1.4 Score=42.11 Aligned_cols=160 Identities=16% Similarity=0.176 Sum_probs=98.5
Q ss_pred hHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhh
Q 015728 94 SLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLL 173 (401)
Q Consensus 94 ~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l 173 (401)
....+.+.+.+. +...+..|...+.. +...-++|.|..+|.+.+. .++..|+. .|..+
T Consensus 44 ~~~~~~~~l~~~--~~~vr~~aa~~l~~-----------~~~~~av~~l~~~l~d~~~--------~vr~~a~~-aLg~~ 101 (335)
T COG1413 44 AADELLKLLEDE--DLLVRLSAAVALGE-----------LGSEEAVPLLRELLSDEDP--------RVRDAAAD-ALGEL 101 (335)
T ss_pred hHHHHHHHHcCC--CHHHHHHHHHHHhh-----------hchHHHHHHHHHHhcCCCH--------HHHHHHHH-HHHcc
Confidence 344444445433 35555555555222 1123368999999988774 47887777 55532
Q ss_pred cCCchhhhhhcccCCchHHHHHHhh-cCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHccCCchhHHH
Q 015728 174 LVGETESLNLLNEESKMESFIVLFE-HGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHHNSEASDA 252 (401)
Q Consensus 174 ~~~~~~~~~~v~~~g~i~~Lv~~L~-~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~ 252 (401)
- ....++.++..|. +++..+|..++.+|..+ .. ...+.+|+.++.+.....
T Consensus 102 ~-----------~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~-~~--------------~~a~~~l~~~l~~~~~~~-- 153 (335)
T COG1413 102 G-----------DPEAVPPLVELLENDENEGVRAAAARALGKL-GD--------------ERALDPLLEALQDEDSGS-- 153 (335)
T ss_pred C-----------ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhc-Cc--------------hhhhHHHHHHhccchhhh--
Confidence 1 2345888999998 58889999999999888 32 134788888885433111
Q ss_pred HHHHHHHhcCCCchhHH-------HHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCH
Q 015728 253 GVRAFSALCSTETNRKT-------LVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIE 308 (401)
Q Consensus 253 a~~aL~~Ls~~~~n~~~-------iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~ 308 (401)
++..+ .......|.. +.+.-.++.+...+. +....++..|..+|..+....
T Consensus 154 a~~~~--~~~~~~~r~~a~~~l~~~~~~~~~~~l~~~l~---~~~~~vr~~Aa~aL~~~~~~~ 211 (335)
T COG1413 154 AAAAL--DAALLDVRAAAAEALGELGDPEAIPLLIELLE---DEDADVRRAAASALGQLGSEN 211 (335)
T ss_pred hhhhc--cchHHHHHHHHHHHHHHcCChhhhHHHHHHHh---CchHHHHHHHHHHHHHhhcch
Confidence 11111 0000011211 223447888999998 667789999999999887654
No 154
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=96.06 E-value=1.4 Score=44.45 Aligned_cols=251 Identities=11% Similarity=0.098 Sum_probs=118.9
Q ss_pred hHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCC
Q 015728 109 LETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEES 188 (401)
Q Consensus 109 ~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g 188 (401)
.-.+.++++.+..++.++- -..+++ ..|..|-.+|+++... .+..|+. +|+.|+.-.++.. .+...
T Consensus 278 emV~lE~Ar~v~~~~~~nv--~~~~~~-~~vs~L~~fL~s~rv~--------~rFsA~R-iln~lam~~P~kv-~vcN~- 343 (898)
T COG5240 278 EMVFLEAARAVCALSEENV--GSQFVD-QTVSSLRTFLKSTRVV--------LRFSAMR-ILNQLAMKYPQKV-SVCNK- 343 (898)
T ss_pred hhhhHHHHHHHHHHHHhcc--CHHHHH-HHHHHHHHHHhcchHH--------HHHHHHH-HHHHHHhhCCcee-eecCh-
Confidence 3467888888888776652 222222 2577888888887644 7888888 9998886554321 11111
Q ss_pred chHH-------------HHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHccCCchhHHHHHH
Q 015728 189 KMES-------------FIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHHNSEASDAGVR 255 (401)
Q Consensus 189 ~i~~-------------Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~a~~ 255 (401)
-+.. +-.+|+.|+.+.-..-...+-+++...+ |.+|..+. .++..|--++.. -+..-+.
T Consensus 344 evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~S--D~FKiI~i---da~rsLsl~Fp~---k~~s~l~ 415 (898)
T COG5240 344 EVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMS--DGFKIIAI---DALRSLSLLFPS---KKLSYLD 415 (898)
T ss_pred hHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhc--cCceEEeH---HHHHHHHhhCcH---HHHHHHH
Confidence 1222 2234444444333333333333312111 12222221 122222221100 0111111
Q ss_pred HHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHH------hCCC--------cH
Q 015728 256 AFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALI------NNPN--------GV 321 (401)
Q Consensus 256 aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~------~~~g--------~i 321 (401)
.|.+.-.++.. -+ .+.-+|.++.+.+. -.++.++.|+..|+..-.+-+.....+ +++| .|
T Consensus 416 FL~~~L~~eGg-~e-FK~~~Vdaisd~~~----~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yv 489 (898)
T COG5240 416 FLGSSLLQEGG-LE-FKKYMVDAISDAME----NDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYV 489 (898)
T ss_pred HHHHHHHhccc-ch-HHHHHHHHHHHHHh----hCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHH
Confidence 11111111100 00 01113445555555 245677777777776665544332221 2222 22
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728 322 YALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS 392 (401)
Q Consensus 322 ~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~ 392 (401)
..+...+. ..+..++..|+.+|.-++-+-.+ .+....+...|-..+.+. ++++|+.|+-+|+.+..
T Consensus 490 rhIyNR~i-LEN~ivRsaAv~aLskf~ln~~d---~~~~~sv~~~lkRclnD~-DdeVRdrAsf~l~~~~~ 555 (898)
T COG5240 490 RHIYNRLI-LENNIVRSAAVQALSKFALNISD---VVSPQSVENALKRCLNDQ-DDEVRDRASFLLRNMRL 555 (898)
T ss_pred HHHHHHHH-HhhhHHHHHHHHHHHHhccCccc---cccHHHHHHHHHHHhhcc-cHHHHHHHHHHHHhhhh
Confidence 22222221 12335777788888665543211 122233344566667666 89999999999998764
No 155
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=96.03 E-value=0.36 Score=51.10 Aligned_cols=266 Identities=12% Similarity=0.118 Sum_probs=150.4
Q ss_pred cChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcC-Cchhhhhhcc
Q 015728 107 ATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLV-GETESLNLLN 185 (401)
Q Consensus 107 ~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~-~~~~~~~~v~ 185 (401)
++.+.|..|..-|-.-..++..+-+.=-+..++..|+++|++..+ ++|..|+.| +.-|.. -.++..+-
T Consensus 17 sDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ng--------EVQnlAVKC-lg~lvsKvke~~le~-- 85 (1233)
T KOG1824|consen 17 SDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNG--------EVQNLAVKC-LGPLVSKVKEDQLET-- 85 (1233)
T ss_pred CCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCc--------HHHHHHHHH-HHHHHhhchHHHHHH--
Confidence 456688888888776665543221111124578889999987764 599999994 444441 11111111
Q ss_pred cCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccc--hhhhhhhhccchHHHHHHHHHcc--CC-chhHHHHHHHHHHh
Q 015728 186 EESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHE--TKELCCKLGKDDRLLREIISLVH--HN-SEASDAGVRAFSAL 260 (401)
Q Consensus 186 ~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~--~~~~~~~i~~~~g~i~~Lv~lL~--~~-~~~~~~a~~aL~~L 260 (401)
.+..|..-+-+|..+.+-.++..|...++...+ +..+...+.. .+.|.|..-+. ++ ..++..++..|..+
T Consensus 86 ---~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~--~~t~~l~~~i~~qe~~sai~~e~lDil~d~ 160 (1233)
T KOG1824|consen 86 ---IVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCK--RITPKLKQAISKQEDVSAIKCEVLDILADV 160 (1233)
T ss_pred ---HHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHH--HHHHHHHHHhhhcccchhhHHHHHHHHHHH
Confidence 133333333345555555555555444343321 0012222222 24455555552 22 23566666655543
Q ss_pred c-CCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHH
Q 015728 261 C-STETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSEN 339 (401)
Q Consensus 261 s-~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~ 339 (401)
- ...+--.. ...+....++.-|. .....++..|+.+|..|+....+ ... .+.|..|++-+-....+....-
T Consensus 161 lsr~g~ll~~-fh~~il~~l~~ql~---s~R~aVrKkai~~l~~la~~~~~-~ly---~~li~~Ll~~L~~~~q~~~~rt 232 (1233)
T KOG1824|consen 161 LSRFGTLLPN-FHLSILKCLLPQLQ---SPRLAVRKKAITALGHLASSCNR-DLY---VELIEHLLKGLSNRTQMSATRT 232 (1233)
T ss_pred HHhhcccCcc-hHHHHHHHHhhccc---ChHHHHHHHHHHHHHHHHHhcCH-HHH---HHHHHHHHhccCCCCchHHHHH
Confidence 2 22111111 33455555666665 45567899999999999864222 222 1456667776554455566677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHh---hcCCCHHHHHHHHHHHHHHHHhhHHhh
Q 015728 340 AINSLMMICCDSLQAREEAICAGVLTQLLLLL---QSQCSNRTKTKARMLLKLLRSKWAEEL 398 (401)
Q Consensus 340 a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll---~~~~~~~~~~~A~~~L~~l~~~~~e~~ 398 (401)
-+.+|..+|...+ .|.--.-...++.+.+.. +.+ .++-||+....+..+-+.+|-|.
T Consensus 233 ~Iq~l~~i~r~ag-~r~~~h~~~ivp~v~~y~~~~e~~-dDELrE~~lQale~fl~rcp~ei 292 (1233)
T KOG1824|consen 233 YIQCLAAICRQAG-HRFGSHLDKIVPLVADYCNKIEED-DDELREYCLQALESFLRRCPKEI 292 (1233)
T ss_pred HHHHHHHHHHHhc-chhhcccchhhHHHHHHhcccccC-cHHHHHHHHHHHHHHHHhChhhh
Confidence 7788888876543 222333455678888887 555 78999999999999888777664
No 156
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.0041 Score=60.25 Aligned_cols=53 Identities=17% Similarity=0.340 Sum_probs=40.4
Q ss_pred CCCCCcccccccccccC-----------------CceEcCccccccHHhHHHHHHcCCCCCCCCcccCCC
Q 015728 7 MTIPHLFRCPISLDLFT-----------------DPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHD 59 (401)
Q Consensus 7 ~~~~~~~~C~iC~~~~~-----------------~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~ 59 (401)
..+...--|+||+.... +-+.+||.|.|.+.|+.+|...-...||+||.++..
T Consensus 566 ~~~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 566 AFVRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred chhhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 33556678999987542 133459999999999999998556689999998753
No 157
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.01 E-value=0.0042 Score=58.25 Aligned_cols=47 Identities=19% Similarity=0.217 Sum_probs=39.3
Q ss_pred cccccccccccCCceEcCccccc-cHHhHHHHHHcCCCCCCCCcccCCC
Q 015728 12 LFRCPISLDLFTDPVTLCTGQTY-DRSSIEKWLAAGNLTCPVTMQTLHD 59 (401)
Q Consensus 12 ~~~C~iC~~~~~~Pv~~~Cgh~f-c~~Ci~~~~~~~~~~CP~c~~~~~~ 59 (401)
.-.|-||+.-.+|-+.+||.|.+ |..|-+...- ....||.||+++..
T Consensus 290 gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~-q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 290 GKECVICLSESRDTVVLPCRHLCLCSGCAKSLRY-QTNNCPICRQPIEE 337 (349)
T ss_pred CCeeEEEecCCcceEEecchhhehhHhHHHHHHH-hhcCCCccccchHh
Confidence 56899999999999999999955 9999876553 56779999998754
No 158
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.01 E-value=0.0029 Score=59.95 Aligned_cols=58 Identities=33% Similarity=0.613 Sum_probs=44.4
Q ss_pred cccccccccccCCceE-----cCccccccHHhHHHHHHcC-CCCCCCCcccCCCCCCCCcHHHH
Q 015728 12 LFRCPISLDLFTDPVT-----LCTGQTYDRSSIEKWLAAG-NLTCPVTMQTLHDPSIVPNHTLR 69 (401)
Q Consensus 12 ~~~C~iC~~~~~~Pv~-----~~Cgh~fc~~Ci~~~~~~~-~~~CP~c~~~~~~~~~~~n~~l~ 69 (401)
..+||||++-+.-|.- +.|||-|-..||++|+.+. ...||.|......+++++-..++
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR 67 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALR 67 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHH
Confidence 4689999998877653 5799999999999999742 47799998766665666555443
No 159
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.99 E-value=0.06 Score=54.57 Aligned_cols=218 Identities=17% Similarity=0.142 Sum_probs=131.0
Q ss_pred hHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCc------h-hhhhhcccCCchHHHHHHhhcCCHHHHHHHHHH
Q 015728 139 LPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGE------T-ESLNLLNEESKMESFIVLFEHGSCSIKKRLCHL 211 (401)
Q Consensus 139 i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~------~-~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~ 211 (401)
....++.+++.. ..++..|+. +++....-- + +.++.. ..+...+-+.+...+..+|..|+.+
T Consensus 236 Y~~A~~~lsD~~--------e~VR~aAvq-lv~v~gn~~p~~~e~e~~e~kl~--D~aF~~vC~~v~D~sl~VRV~AaK~ 304 (823)
T KOG2259|consen 236 YSRAVKHLSDDY--------EDVRKAAVQ-LVSVWGNRCPAPLERESEEEKLK--DAAFSSVCRAVRDRSLSVRVEAAKA 304 (823)
T ss_pred HHHHHHHhcchH--------HHHHHHHHH-HHHHHHhcCCCcccchhhhhhhH--HHHHHHHHHHHhcCceeeeehHHHH
Confidence 445667776654 347777766 554332110 1 112222 2357777788888889999999999
Q ss_pred HHHHHhcccchhhhhhhhccchHHHHHHHHHccCCchhHHHHHHHHHHh--cC------------CCchhHHHHhcCcHH
Q 015728 212 VEVIISSSHETKELCCKLGKDDRLLREIISLVHHNSEASDAGVRAFSAL--CS------------TETNRKTLVQEGAIN 277 (401)
Q Consensus 212 L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~a~~aL~~L--s~------------~~~n~~~iv~~G~v~ 277 (401)
|+.+ ...+ ...|-. -.=..++.=++....+.+.......+. ++ .++.-..++.+|+-.
T Consensus 305 lG~~-~~vS-----ee~i~Q--TLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACG 376 (823)
T KOG2259|consen 305 LGEF-EQVS-----EEIIQQ--TLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACG 376 (823)
T ss_pred hchH-HHhH-----HHHHHH--HHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccc
Confidence 9988 4433 111110 011112221111111222222222222 00 122344578899999
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHH
Q 015728 278 GLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREE 357 (401)
Q Consensus 278 ~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 357 (401)
++|+=|. +.--+++..|+..++.|+.+.-+-.. .++.-||. |+++.-..++..|+.+|..|+.+ .
T Consensus 377 A~VhGlE---DEf~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvD-MfNDE~~~VRL~ai~aL~~Is~~------l 441 (823)
T KOG2259|consen 377 ALVHGLE---DEFYEVRRAAVASLCSLATSSPGFAV-----RALDFLVD-MFNDEIEVVRLKAIFALTMISVH------L 441 (823)
T ss_pred eeeeech---HHHHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHH-HhccHHHHHHHHHHHHHHHHHHH------h
Confidence 9999998 67779999999999999974332221 24667889 68877778999999999999876 2
Q ss_pred HHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 015728 358 AICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLR 391 (401)
Q Consensus 358 ~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~ 391 (401)
.+++.-++.++.-|.+. +..+|+....+|+...
T Consensus 442 ~i~eeql~~il~~L~D~-s~dvRe~l~elL~~~~ 474 (823)
T KOG2259|consen 442 AIREEQLRQILESLEDR-SVDVREALRELLKNAR 474 (823)
T ss_pred eecHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcC
Confidence 23344456667777666 7888888877776543
No 160
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.94 E-value=0.013 Score=40.07 Aligned_cols=54 Identities=13% Similarity=0.089 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHH
Q 015728 160 QFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVI 215 (401)
Q Consensus 160 ~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l 215 (401)
.++..|++ .|..++....+...-. ....++.|+.+|++++.++|..|+++|.+|
T Consensus 2 ~vR~~A~~-aLg~l~~~~~~~~~~~-~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAW-ALGRLAEGCPELLQPY-LPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHH-HHHCTTTTTHHHHHHH-HHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHH-HHhhHhcccHHHHHHH-HHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 47899999 8888775554443333 356799999999988899999999999865
No 161
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.90 E-value=0.7 Score=50.19 Aligned_cols=226 Identities=18% Similarity=0.229 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHHhhcCCchhhhhhccc--CCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHH
Q 015728 159 VQFVEESLSCVQKLLLVGETESLNLLNE--ESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLL 236 (401)
Q Consensus 159 ~~~~~~a~~~~L~~l~~~~~~~~~~v~~--~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i 236 (401)
..+|..+-. +|..++..+.. ...+.+ ......|.+-+++.....|.....+|..|.-..+ .+++..+.. .|
T Consensus 668 ~~vQkK~yr-lL~~l~~~~s~-~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~--~e~~~~i~k---~I 740 (1176)
T KOG1248|consen 668 TKVQKKAYR-LLEELSSSPSG-EGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLS--AEHCDLIPK---LI 740 (1176)
T ss_pred HHHHHHHHH-HHHHHhcCCch-hhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcc--HHHHHHHHH---HH
Confidence 568999999 88887755221 112211 0122333344444444445444444444422211 144555532 34
Q ss_pred HHHHHHccC-CchhHHHHHHHHHHhcCCCchhHHHHhcC------cHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHh
Q 015728 237 REIISLVHH-NSEASDAGVRAFSALCSTETNRKTLVQEG------AINGLIAYISNALTRERSLAAIAMARIEQLLAIEN 309 (401)
Q Consensus 237 ~~Lv~lL~~-~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G------~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~ 309 (401)
+.++-.++. +...++.|-.+|..++. .....+.| .|...+..+.-. --.......+.. |-.+...--
T Consensus 741 ~EvIL~~Ke~n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isag-l~gd~~~~~as~-Ivai~~il~ 814 (1176)
T KOG1248|consen 741 PEVILSLKEVNVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAG-LVGDSTRVVASD-IVAITHILQ 814 (1176)
T ss_pred HHHHHhcccccHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhh-hcccHHHHHHHH-HHHHHHHHH
Confidence 544444443 55689999999998873 11122222 455555555421 001222222222 222222111
Q ss_pred hHHHHHhCCCcHHHHHHHH---HhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHH
Q 015728 310 SKDALINNPNGVYALVKMV---FRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARML 386 (401)
Q Consensus 310 ~~~~~~~~~g~i~~Lv~~l---~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~ 386 (401)
....+. +.+.++.+++++ +..+++.+...|+..+..++...++..-.-...-.++.++.+.++. ....|.+...+
T Consensus 815 e~~~~l-d~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~-k~~~r~Kvr~L 892 (1176)
T KOG1248|consen 815 EFKNIL-DDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDH-KIKVRKKVRLL 892 (1176)
T ss_pred HHhccc-cHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhh-hHHHHHHHHHH
Confidence 222232 445566666543 4557788999999999999888776554555566889999988777 88999999999
Q ss_pred HHHHHH-hhHHhhc
Q 015728 387 LKLLRS-KWAEELK 399 (401)
Q Consensus 387 L~~l~~-~~~e~~~ 399 (401)
|..|.+ +-++|++
T Consensus 893 lekLirkfg~~eLe 906 (1176)
T KOG1248|consen 893 LEKLIRKFGAEELE 906 (1176)
T ss_pred HHHHHHHhCHHHHH
Confidence 988777 4455554
No 162
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=95.83 E-value=1.4 Score=43.49 Aligned_cols=188 Identities=11% Similarity=0.090 Sum_probs=115.2
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc--C---C-ch--hHHHHHHHHHHhcCC
Q 015728 192 SFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH--H---N-SE--ASDAGVRAFSALCST 263 (401)
Q Consensus 192 ~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~--~---~-~~--~~~~a~~aL~~Ls~~ 263 (401)
.+..++...+.+.|-.|.....+++-.++-+-.+|+.+-++.|+ +++-++|. + + ++ -+.-+...|.-.|+.
T Consensus 15 ~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf-~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~ 93 (698)
T KOG2611|consen 15 DCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGF-HFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV 93 (698)
T ss_pred hHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhcc-chHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC
Confidence 35556666666777777777777733333223556667677675 88888882 1 1 22 455566777778888
Q ss_pred Cc--hhHHHHhcCcHHHHHHHHHhhccccch------HHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChh
Q 015728 264 ET--NRKTLVQEGAINGLIAYISNALTRERS------LAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHE 335 (401)
Q Consensus 264 ~~--n~~~iv~~G~v~~Lv~lL~~~~~~~~~------~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~ 335 (401)
++ ....|++ .||.|.+++.. ..+.+ +.+.+-..|...+..+.|...++ ..|+++.+-++-.-.+...
T Consensus 94 pElAsh~~~v~--~IP~llev~~~--~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Li-a~G~~~~~~Q~y~~~~~~~ 168 (698)
T KOG2611|consen 94 PELASHEEMVS--RIPLLLEVMSK--GIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLI-ASGGLRVIAQMYELPDGSH 168 (698)
T ss_pred hhhccCHHHHH--hhhHHHHHHHh--cCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHH-hcCchHHHHHHHhCCCCch
Confidence 87 4666666 69999999985 33333 78889999999999998999887 8899999999433333323
Q ss_pred HHHHHHHHHHHHhcCCH---HHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHH
Q 015728 336 GSENAINSLMMICCDSL---QAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLK 388 (401)
Q Consensus 336 ~~~~a~~~L~~l~~~~~---~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~ 388 (401)
.+.-|+.++.-+...-. +.-..+..- |..+-.-++.. .+..|-....+|-
T Consensus 169 d~alal~Vlll~~~~~~cw~e~~~~flal--i~~va~df~~~-~~a~KfElc~lL~ 221 (698)
T KOG2611|consen 169 DMALALKVLLLLVSKLDCWSETIERFLAL--IAAVARDFAVL-HNALKFELCHLLS 221 (698)
T ss_pred hHHHHHHHHHHHHHhcccCcCCHHHHHHH--HHHHHHHHHHh-hhHHHHHHHHHHH
Confidence 44445555544433211 111111111 33333333444 5566666666665
No 163
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.75 E-value=0.0063 Score=40.01 Aligned_cols=43 Identities=19% Similarity=0.234 Sum_probs=21.7
Q ss_pred ccccccccC--CceEc--CccccccHHhHHHHHHcCCCCCCCCcccC
Q 015728 15 CPISLDLFT--DPVTL--CTGQTYDRSSIEKWLAAGNLTCPVTMQTL 57 (401)
Q Consensus 15 C~iC~~~~~--~Pv~~--~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~ 57 (401)
||+|.+.+. +--.. +||+-+|+.|+.+........||.||++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 788988772 21123 58999999999988775677899999864
No 164
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=95.73 E-value=0.012 Score=39.26 Aligned_cols=41 Identities=24% Similarity=0.463 Sum_probs=31.7
Q ss_pred ccccccc--ccCCceEcCcc-----ccccHHhHHHHHHcC-CCCCCCCc
Q 015728 14 RCPISLD--LFTDPVTLCTG-----QTYDRSSIEKWLAAG-NLTCPVTM 54 (401)
Q Consensus 14 ~C~iC~~--~~~~Pv~~~Cg-----h~fc~~Ci~~~~~~~-~~~CP~c~ 54 (401)
.|-||++ .-.+|...||. +.+-..|+.+|+... ...||.|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4889987 44567778875 568899999999863 56799984
No 165
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=95.73 E-value=0.64 Score=42.41 Aligned_cols=155 Identities=14% Similarity=0.153 Sum_probs=102.5
Q ss_pred hHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhc-CCchhhhhhcccC
Q 015728 109 LETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLL-VGETESLNLLNEE 187 (401)
Q Consensus 109 ~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~-~~~~~~~~~v~~~ 187 (401)
......|+.-|+-+++ +++.|..+.++...-.|.-+|...+.. .....++-.+++ +.+.|. .++.+....+.+.
T Consensus 64 snRVcnaLaLlQ~vAs-hpetr~~Fl~a~iplyLyPfL~tt~k~---r~~E~LRLtsLG-VIgaLvK~d~~evi~fLl~t 138 (262)
T PF04078_consen 64 SNRVCNALALLQCVAS-HPETRMPFLKAHIPLYLYPFLNTTSKT---RPFEYLRLTSLG-VIGALVKTDDPEVISFLLQT 138 (262)
T ss_dssp HHHHHHHHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----S---HHHHHHHHHHHH-HHHHHHTT--HHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHc-ChHHHHHHHHcCchhhehhhhhccccc---cccchhhHhHHH-HHHHHHcCCcHHHHHHHHhh
Confidence 3566788888888888 556888888999887788888665543 112345555666 555555 3444455566688
Q ss_pred CchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccch-------HHHHHHHHHc--cCCchhHHHHHHHHH
Q 015728 188 SKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDD-------RLLREIISLV--HHNSEASDAGVRAFS 258 (401)
Q Consensus 188 g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~-------g~i~~Lv~lL--~~~~~~~~~a~~aL~ 258 (401)
+.||..++.++.|+.-.|.-|+.++.++.. ++ ..-..++... .++..+|.-+ +.++...+...++-.
T Consensus 139 EiiplcLr~me~GselSKtvAtfIlqKIL~-dd---~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYl 214 (262)
T PF04078_consen 139 EIIPLCLRIMEFGSELSKTVATFILQKILL-DD---VGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYL 214 (262)
T ss_dssp THHHHHHHHHHHS-HHHHHHHHHHHHHHHH-SH---HHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHH
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHHHHc-ch---hHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHH
Confidence 999999999999999999999999999834 33 2233333221 2334444433 345679999999999
Q ss_pred HhcCCCchhHHHHh
Q 015728 259 ALCSTETNRKTLVQ 272 (401)
Q Consensus 259 ~Ls~~~~n~~~iv~ 272 (401)
.|+.++..+..+.+
T Consensus 215 RLsdnprar~aL~~ 228 (262)
T PF04078_consen 215 RLSDNPRAREALRQ 228 (262)
T ss_dssp HHTTSTTHHHHHHH
T ss_pred HHccCHHHHHHHHH
Confidence 99999988887764
No 166
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=95.65 E-value=0.041 Score=42.81 Aligned_cols=64 Identities=14% Similarity=0.198 Sum_probs=52.0
Q ss_pred HHHHHHHHHHhc-CCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCH-hhHHHH
Q 015728 250 SDAGVRAFSALC-STETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIE-NSKDAL 314 (401)
Q Consensus 250 ~~~a~~aL~~Ls-~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~-~~~~~~ 314 (401)
+....++|.||+ .++.++..+.+.|+||.++..-.-. +.++-+++.|+.++.+|+.+. +++..+
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD-~~nP~irEwai~aiRnL~e~n~eNQ~~I 68 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNID-DHNPFIREWAIFAIRNLCEGNPENQEFI 68 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCC-cccHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 566788999999 6888999999999999999986421 456789999999999999764 555544
No 167
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.56 E-value=0.53 Score=49.48 Aligned_cols=165 Identities=14% Similarity=0.145 Sum_probs=112.3
Q ss_pred cChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhccc
Q 015728 107 ATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNE 186 (401)
Q Consensus 107 ~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~ 186 (401)
++...|..|++.+-.-+...+.-- -..|-.++...+.+ .++..-.-- =|.+.+..+++ ..++
T Consensus 31 ~n~~~kidAmK~iIa~M~~G~dms------sLf~dViK~~~trd--------~ElKrL~yl-Yl~~yak~~P~-~~lL-- 92 (757)
T COG5096 31 SNDYKKIDAMKKIIAQMSLGEDMS------SLFPDVIKNVATRD--------VELKRLLYL-YLERYAKLKPE-LALL-- 92 (757)
T ss_pred cChHHHHHHHHHHHHHHhcCCChH------HHHHHHHHHHHhcC--------HHHHHHHHH-HHHHHhccCHH-HHHH--
Confidence 456678888888777766655411 12555566665443 344443332 23334433332 2233
Q ss_pred CCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cCCchhHHHHHHHHHHhcCCCc
Q 015728 187 ESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-HHNSEASDAGVRAFSALCSTET 265 (401)
Q Consensus 187 ~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~a~~aL~~Ls~~~~ 265 (401)
++..+.+-++++++..|..|.+++..| - ....+ +-+++++.+++ +++..++++|+-|+.++-.-+
T Consensus 93 --avNti~kDl~d~N~~iR~~AlR~ls~l-~-------~~el~---~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld- 158 (757)
T COG5096 93 --AVNTIQKDLQDPNEEIRGFALRTLSLL-R-------VKELL---GNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLD- 158 (757)
T ss_pred --HHHHHHhhccCCCHHHHHHHHHHHHhc-C-------hHHHH---HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC-
Confidence 477778888899999999988888777 2 23443 24678899999 456679999999999987543
Q ss_pred hhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCC
Q 015728 266 NRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAI 307 (401)
Q Consensus 266 n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~ 307 (401)
+....+.|.+..+..++. +.++.+..+|+.+|..+...
T Consensus 159 -~~l~~~~g~~~~l~~l~~---D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 159 -KDLYHELGLIDILKELVA---DSDPIVIANALASLAEIDPE 196 (757)
T ss_pred -HhhhhcccHHHHHHHHhh---CCCchHHHHHHHHHHHhchh
Confidence 344558899999999998 78999999999999988653
No 168
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=95.47 E-value=0.088 Score=38.29 Aligned_cols=64 Identities=13% Similarity=0.141 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHH
Q 015728 250 SDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALI 315 (401)
Q Consensus 250 ~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~ 315 (401)
.+.|++|+.++++.+.....+-+.++|+.++++..+ .+.-.++.-|..+|..++...++...+.
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~--s~v~siRGT~fy~Lglis~T~~G~~~L~ 67 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAEN--SPVLSIRGTCFYVLGLISSTEEGAEILD 67 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHh--CCccchHHHHHHHHHHHhCCHHHHHHHH
Confidence 688999999999999888888889999999999986 6677899999999999999999988774
No 169
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=95.46 E-value=1.6 Score=39.38 Aligned_cols=155 Identities=13% Similarity=0.114 Sum_probs=99.9
Q ss_pred hHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhc-CCchhhhhhcccC
Q 015728 109 LETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLL-VGETESLNLLNEE 187 (401)
Q Consensus 109 ~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~-~~~~~~~~~v~~~ 187 (401)
+.....|+..|+-++++.+ .|..+.++..--.|-.+|..++.. ....-.+-.+++ +++.|. .++.+....+...
T Consensus 93 snRVcnaL~LlQcvASHpd-Tr~~FL~A~iPlylYpfL~Tt~~~---r~fEyLRLtsLG-VIgaLvk~dd~eVi~fLl~T 167 (293)
T KOG3036|consen 93 SNRVCNALALLQCVASHPD-TRRAFLRAHIPLYLYPFLNTTSKS---RPFEYLRLTSLG-VIGALVKNDDQEVIRFLLTT 167 (293)
T ss_pred cchHHHHHHHHHHHhcCcc-hHHHHHHccChhhhHHhhhccccC---CchHHHhHHHHH-HHHHHHhcCcHHHHHHHHHh
Confidence 3456778888887777654 777777776444444455333221 112446677777 665555 4444555566688
Q ss_pred CchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccc-------hHHHHHHHHHc-c-CCchhHHHHHHHHH
Q 015728 188 SKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKD-------DRLLREIISLV-H-HNSEASDAGVRAFS 258 (401)
Q Consensus 188 g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~-------~g~i~~Lv~lL-~-~~~~~~~~a~~aL~ 258 (401)
+.||..++.+.+|+...|.-|+.++..+ =.++ ..-..|+.. .-.+..++.-| + ++..+.+++.++..
T Consensus 168 eIVPlCLrime~GSelSKtvA~fIlqKI-lldD---~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYl 243 (293)
T KOG3036|consen 168 EIVPLCLRIMESGSELSKTVATFILQKI-LLDD---VGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYL 243 (293)
T ss_pred hhHHHHHHHHhcccHHHHHHHHHHHHHH-hhcc---ccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999998 4443 222222211 11223333333 3 45679999999999
Q ss_pred HhcCCCchhHHHHh
Q 015728 259 ALCSTETNRKTLVQ 272 (401)
Q Consensus 259 ~Ls~~~~n~~~iv~ 272 (401)
+|+.++..|..+..
T Consensus 244 rLsdnprar~aL~~ 257 (293)
T KOG3036|consen 244 RLSDNPRARAALRS 257 (293)
T ss_pred HhcCCHHHHHHHHh
Confidence 99999877766543
No 170
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.44 E-value=3.1 Score=43.03 Aligned_cols=256 Identities=11% Similarity=0.093 Sum_probs=133.1
Q ss_pred ChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccC
Q 015728 108 TLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEE 187 (401)
Q Consensus 108 ~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~ 187 (401)
++-...-|+..+.+.-.. ++++.+. +-+-++|.|++.. .-++..|+-|+|+.+-..+ .++.-.
T Consensus 124 n~~fv~LAL~~I~niG~r--e~~ea~~-----~DI~KlLvS~~~~------~~vkqkaALclL~L~r~sp----Dl~~~~ 186 (938)
T KOG1077|consen 124 NPTFVCLALHCIANIGSR--EMAEAFA-----DDIPKLLVSGSSM------DYVKQKAALCLLRLFRKSP----DLVNPG 186 (938)
T ss_pred CcHHHHHHHHHHHhhccH--hHHHHhh-----hhhHHHHhCCcch------HHHHHHHHHHHHHHHhcCc----cccChh
Confidence 445666677777766533 2344442 2233778787764 4577777777999776433 234233
Q ss_pred CchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHccCC-----------chhHHHHHHH
Q 015728 188 SKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHHN-----------SEASDAGVRA 256 (401)
Q Consensus 188 g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~-----------~~~~~~a~~a 256 (401)
+....++.+|+..+..+...++..+..|+...+ +++|..+..+.+-+.-++..-..+ +=++...+++
T Consensus 187 ~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p--~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rl 264 (938)
T KOG1077|consen 187 EWAQRIVHLLDDQHMGVVTAATSLIEALVKKNP--ESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRL 264 (938)
T ss_pred hHHHHHHHHhCccccceeeehHHHHHHHHHcCC--HHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHH
Confidence 578899999988777777777778877744333 366666654333333333322111 1156666666
Q ss_pred HHHhcC--CCchhHHHHhcCcHHHHHHHHHhhccccchHHH-HHHHH----HHHHhCC-HhhHHHHHhCCCcHHHHHHHH
Q 015728 257 FSALCS--TETNRKTLVQEGAINGLIAYISNALTRERSLAA-IAMAR----IEQLLAI-ENSKDALINNPNGVYALVKMV 328 (401)
Q Consensus 257 L~~Ls~--~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~-~a~~~----L~~La~~-~~~~~~~~~~~g~i~~Lv~~l 328 (401)
|.++-. ++.+|.++.+ +...++...+.. ..+..+++ +|-.+ .-+|+.+ +.....+. .++..|-+ +
T Consensus 265 Lq~~p~~~D~~~r~~l~e--vl~~iLnk~~~~-~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~---~~~~~Lg~-f 337 (938)
T KOG1077|consen 265 LQIYPTPEDPSTRARLNE--VLERILNKAQEP-PKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS---RAVNQLGQ-F 337 (938)
T ss_pred HHhCCCCCCchHHHHHHH--HHHHHHhccccC-ccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH---HHHHHHHH-H
Confidence 666643 2234544433 222222222211 01112221 11111 1122222 22222222 24455555 3
Q ss_pred HhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728 329 FRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS 392 (401)
Q Consensus 329 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~ 392 (401)
+.+.+...+--|+.-++.|+.. +.....+..+ ....+..|+...+-..|++|..+|+.++.
T Consensus 338 ls~rE~NiRYLaLEsm~~L~ss-~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD 398 (938)
T KOG1077|consen 338 LSHRETNIRYLALESMCKLASS-EFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCD 398 (938)
T ss_pred hhcccccchhhhHHHHHHHHhc-cchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhc
Confidence 4455555666677766666654 2333333333 55666666644466677777777776654
No 171
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.43 E-value=0.012 Score=55.98 Aligned_cols=49 Identities=18% Similarity=0.485 Sum_probs=39.9
Q ss_pred CCCcccccccccccC---CceEcCccccccHHhHHHHHHcCC--CCCCCCcccC
Q 015728 9 IPHLFRCPISLDLFT---DPVTLCTGQTYDRSSIEKWLAAGN--LTCPVTMQTL 57 (401)
Q Consensus 9 ~~~~~~C~iC~~~~~---~Pv~~~Cgh~fc~~Ci~~~~~~~~--~~CP~c~~~~ 57 (401)
.+.-|.|||-.+--. .|+.+.|||..|+..+.+....|. +.||.|....
T Consensus 331 fHSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~ 384 (394)
T KOG2817|consen 331 FHSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQ 384 (394)
T ss_pred ccceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCccc
Confidence 456789999777543 488899999999999999888776 8899996543
No 172
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.43 E-value=0.23 Score=50.67 Aligned_cols=173 Identities=16% Similarity=0.166 Sum_probs=118.5
Q ss_pred CChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhh--hccc--CCchHHHHHHhhcCCHHHHHHHHHHH
Q 015728 137 GFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLN--LLNE--ESKMESFIVLFEHGSCSIKKRLCHLV 212 (401)
Q Consensus 137 G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~--~v~~--~g~i~~Lv~~L~~~~~~~~~~aa~~L 212 (401)
.++|.|..+|.+++.. .+|-|.. +|..++.+..+.-+ ...+ .-.||.++.+.+++++..|..|...+
T Consensus 128 elLp~L~~~L~s~d~n--------~~EgA~~-AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cv 198 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYN--------TCEGAFG-ALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCV 198 (885)
T ss_pred hHHHHHHHHhcCCccc--------ccchhHH-HHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhh
Confidence 3689999999998865 7888999 88888855443211 1111 12589999999999999999998888
Q ss_pred HHHHhcccchhhhhhhhccchHHHHHHHHHc-cCCchhHHHHHHHHHHhcCCCchhHHHHh--cCcHHHHHHHHHhhccc
Q 015728 213 EVIISSSHETKELCCKLGKDDRLLREIISLV-HHNSEASDAGVRAFSALCSTETNRKTLVQ--EGAINGLIAYISNALTR 289 (401)
Q Consensus 213 ~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~a~~aL~~Ls~~~~n~~~iv~--~G~v~~Lv~lL~~~~~~ 289 (401)
-.+ -.. .....+......++.|..+- +.+++++++...+|..|-..... +++- .++|+.+++.-+ +.
T Consensus 199 Nq~-i~~----~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d--kl~phl~~IveyML~~tq---d~ 268 (885)
T KOG2023|consen 199 NQF-III----QTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPD--KLVPHLDNIVEYMLQRTQ---DV 268 (885)
T ss_pred hhe-eec----CcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH--hcccchHHHHHHHHHHcc---Cc
Confidence 766 222 22333333345667777766 45677999999999988743222 2222 457777777777 67
Q ss_pred cchHHHHHHHHHHHHhCCHhhHHHHHhC-CCcHHHHHHHH
Q 015728 290 ERSLAAIAMARIEQLLAIENSKDALINN-PNGVYALVKMV 328 (401)
Q Consensus 290 ~~~~~~~a~~~L~~La~~~~~~~~~~~~-~g~i~~Lv~~l 328 (401)
++.+.-.|+.....+|..+.-+..+... ...||.|++-|
T Consensus 269 dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M 308 (885)
T KOG2023|consen 269 DENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGM 308 (885)
T ss_pred chhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccC
Confidence 7788889999999999988555544311 13567776643
No 173
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=95.35 E-value=0.017 Score=46.31 Aligned_cols=50 Identities=18% Similarity=0.351 Sum_probs=42.4
Q ss_pred CcccccccccccCCceEc----CccccccHHhHHHHHHc--CCCCCCCCcccCCCC
Q 015728 11 HLFRCPISLDLFTDPVTL----CTGQTYDRSSIEKWLAA--GNLTCPVTMQTLHDP 60 (401)
Q Consensus 11 ~~~~C~iC~~~~~~Pv~~----~Cgh~fc~~Ci~~~~~~--~~~~CP~c~~~~~~~ 60 (401)
.-+.|.||++...++..+ .||.+.|..|.-..|+. -.+.||+|+.++...
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 467899999999988875 49999999999998885 357899999988754
No 174
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=95.29 E-value=0.0073 Score=57.01 Aligned_cols=46 Identities=20% Similarity=0.297 Sum_probs=38.0
Q ss_pred cccccccccCCceEcCccccccHHhHHHHHHc-CCCCCCCCcccCCC
Q 015728 14 RCPISLDLFTDPVTLCTGQTYDRSSIEKWLAA-GNLTCPVTMQTLHD 59 (401)
Q Consensus 14 ~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~-~~~~CP~c~~~~~~ 59 (401)
.|.||-+-=+|=.+-+|||-.|..|+..|... +..+||-||..+.-
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKG 417 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKG 417 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecc
Confidence 58999997777555689999999999999865 37889999987653
No 175
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=95.28 E-value=0.01 Score=54.87 Aligned_cols=49 Identities=14% Similarity=0.202 Sum_probs=35.9
Q ss_pred CcccccccccccCCc--eE--cCccccccHHhHHHHHHcCCCCCCCCcccCCCC
Q 015728 11 HLFRCPISLDLFTDP--VT--LCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDP 60 (401)
Q Consensus 11 ~~~~C~iC~~~~~~P--v~--~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~ 60 (401)
+++ ||+|.+.|..- -. .+||...|+.|+......-...||.||......
T Consensus 14 ed~-cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~de 66 (480)
T COG5175 14 EDY-CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDE 66 (480)
T ss_pred ccc-CcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhcccc
Confidence 344 99999977422 12 369999999998776654456799999887654
No 176
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=95.21 E-value=0.0041 Score=63.42 Aligned_cols=48 Identities=21% Similarity=0.385 Sum_probs=39.1
Q ss_pred CcccccccccccCCceE---cCccccccHHhHHHHHHcCCCCCCCCcccCCC
Q 015728 11 HLFRCPISLDLFTDPVT---LCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHD 59 (401)
Q Consensus 11 ~~~~C~iC~~~~~~Pv~---~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~ 59 (401)
..-+||+|..-+.+... ..|+|.||..|+..|-+ ...+||.|+..|..
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR-~aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSR-CAQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhh-hcccCchhhhhhhe
Confidence 34579999988887665 36999999999999877 67789999988754
No 177
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.18 E-value=0.0079 Score=62.69 Aligned_cols=49 Identities=16% Similarity=0.421 Sum_probs=37.9
Q ss_pred CCcccccccccccC-----CceEc--CccccccHHhHHHHHHc-CCCCCCCCcccCC
Q 015728 10 PHLFRCPISLDLFT-----DPVTL--CTGQTYDRSSIEKWLAA-GNLTCPVTMQTLH 58 (401)
Q Consensus 10 ~~~~~C~iC~~~~~-----~Pv~~--~Cgh~fc~~Ci~~~~~~-~~~~CP~c~~~~~ 58 (401)
...-.|+||-.++. =|-.. .|.|-|..+|+.+|++. +..+||.||..++
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 34457999988775 24333 49999999999999997 5688999997664
No 178
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=95.16 E-value=0.013 Score=39.53 Aligned_cols=47 Identities=13% Similarity=-0.017 Sum_probs=37.1
Q ss_pred CcccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCC
Q 015728 11 HLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDP 60 (401)
Q Consensus 11 ~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~ 60 (401)
.+..|-.|...-...+.++|||..|..|..-+ +-..||.|+.++...
T Consensus 6 ~~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~---rYngCPfC~~~~~~~ 52 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKGTVLPCGHLICDNCFPGE---RYNGCPFCGTPFEFD 52 (55)
T ss_pred cceeEEEccccccccccccccceeeccccChh---hccCCCCCCCcccCC
Confidence 45567788888888889999999999986532 345699999988654
No 179
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.06 E-value=3.2 Score=39.39 Aligned_cols=196 Identities=15% Similarity=0.166 Sum_probs=105.4
Q ss_pred hHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhc-cchHHHHHHHHHc-cCCchhHHHHHHHHHHhcCC---C
Q 015728 190 MESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLG-KDDRLLREIISLV-HHNSEASDAGVRAFSALCST---E 264 (401)
Q Consensus 190 i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~-~~~g~i~~Lv~lL-~~~~~~~~~a~~aL~~Ls~~---~ 264 (401)
+.-.+..+...+...|+.+...|.++....- ....+. ....++..+.+.+ ++..+-+..|++++.-|+.. .
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~----~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g 120 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRY----LPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAG 120 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc----cHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCC
Confidence 4444555666678888888888887723221 111221 1123556667777 45555667777777777744 3
Q ss_pred chhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHh---CC-HhhHHHHHhCCCcHHHHHHHHHhcCC-------
Q 015728 265 TNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLL---AI-ENSKDALINNPNGVYALVKMVFRVSD------- 333 (401)
Q Consensus 265 ~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La---~~-~~~~~~~~~~~g~i~~Lv~~l~~~~~------- 333 (401)
+....+.+ ...|+|...+... +.....+..++.+|..++ .. .+.-...+.--..|-.+.. +...++
T Consensus 121 ~~~~ei~~-~~~~~L~~~l~d~-s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~-~~~~~~~~~~~~~ 197 (309)
T PF05004_consen 121 EDSEEIFE-ELKPVLKRILTDS-SASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSI-LKSDGNAPVVAAE 197 (309)
T ss_pred ccHHHHHH-HHHHHHHHHHhCC-ccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHh-cCcCCCcccccCC
Confidence 45556665 4889999999841 122344445554555443 22 2222211110011111111 111111
Q ss_pred --hhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHh
Q 015728 334 --HEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSK 393 (401)
Q Consensus 334 --~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~ 393 (401)
+.+.-.|+.+-.-|...-+...-.-.-...++.|..+|+++ +..+|-.|...|-+|-+.
T Consensus 198 ~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~-d~~VRiAAGEaiAll~E~ 258 (309)
T PF05004_consen 198 DDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSD-DVDVRIAAGEAIALLYEL 258 (309)
T ss_pred CccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHH
Confidence 23444555554444433333222233455699999999887 889999999888888663
No 180
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=94.98 E-value=0.024 Score=41.03 Aligned_cols=44 Identities=27% Similarity=0.489 Sum_probs=32.6
Q ss_pred cccccccccC----CceEc-CccccccHHhHHHHHHcCCCCCCCCcccCC
Q 015728 14 RCPISLDLFT----DPVTL-CTGQTYDRSSIEKWLAAGNLTCPVTMQTLH 58 (401)
Q Consensus 14 ~C~iC~~~~~----~Pv~~-~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~ 58 (401)
.||-|+.-+. -|+.- -|.|.|-..||.+|+.. ...||.+++...
T Consensus 33 ~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~T-k~~CPld~q~w~ 81 (88)
T COG5194 33 TCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDT-KGVCPLDRQTWV 81 (88)
T ss_pred cCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhh-CCCCCCCCceeE
Confidence 4666666442 14444 49999999999999995 667999988754
No 181
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=94.89 E-value=0.2 Score=43.97 Aligned_cols=119 Identities=12% Similarity=0.126 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHhhcCCchhhhhhcc---------------cCCchHHHHHHhhcC------CHHHHHHHHHHHHHHHhcc
Q 015728 161 FVEESLSCVQKLLLVGETESLNLLN---------------EESKMESFIVLFEHG------SCSIKKRLCHLVEVIISSS 219 (401)
Q Consensus 161 ~~~~a~~~~L~~l~~~~~~~~~~v~---------------~~g~i~~Lv~~L~~~------~~~~~~~aa~~L~~l~s~~ 219 (401)
....++. +|.||+..+.....++. +...+..|+..+..| ........+.++.|+ +..
T Consensus 11 ~adl~~M-LLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~Nl-S~~ 88 (192)
T PF04063_consen 11 LADLACM-LLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANL-SQL 88 (192)
T ss_pred hHHHHHH-HHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHh-cCC
Confidence 4556666 88999877766554431 122577788776551 234557888899999 877
Q ss_pred cchhhhhhhhccchHH---HHHHHHHcc-CCchhHHHHHHHHHHhcCCCchhHHHHh---cCcHHHHHHHHH
Q 015728 220 HETKELCCKLGKDDRL---LREIISLVH-HNSEASDAGVRAFSALCSTETNRKTLVQ---EGAINGLIAYIS 284 (401)
Q Consensus 220 ~~~~~~~~~i~~~~g~---i~~Lv~lL~-~~~~~~~~a~~aL~~Ls~~~~n~~~iv~---~G~v~~Lv~lL~ 284 (401)
. +.|..+...... |..|+...+ .+..-++-++.+|+|+|...+....+.. .+++|.|+--|.
T Consensus 89 ~---~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 89 P---EGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred H---HHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 6 888888765433 444444443 4445778899999999999988888876 356777766666
No 182
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.87 E-value=0.44 Score=49.39 Aligned_cols=257 Identities=11% Similarity=0.110 Sum_probs=138.5
Q ss_pred cChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhccc
Q 015728 107 ATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNE 186 (401)
Q Consensus 107 ~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~ 186 (401)
.++..++.|+-.+.++-.. +.+.....|.++.|..++.+.+ +.|..+|+. +|..+...+.+.......
T Consensus 133 ~~~yvRktaa~~vakl~~~---~~~~~~~~gl~~~L~~ll~D~~--------p~VVAnAla-aL~eI~e~~~~~~~~~l~ 200 (734)
T KOG1061|consen 133 DDPYVRKTAAVCVAKLFDI---DPDLVEDSGLVDALKDLLSDSN--------PMVVANALA-ALSEIHESHPSVNLLELN 200 (734)
T ss_pred CChhHHHHHHHHHHHhhcC---ChhhccccchhHHHHHHhcCCC--------chHHHHHHH-HHHHHHHhCCCCCccccc
Confidence 4566777777777776554 4466778999999999998555 559999999 888776443321111112
Q ss_pred CCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cCCchhHHHHHHHHHHhcCCCc
Q 015728 187 ESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-HHNSEASDAGVRAFSALCSTET 265 (401)
Q Consensus 187 ~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~a~~aL~~Ls~~~~ 265 (401)
...+..++..|...+.=.|. .+|..+ +...+.++ .++..++..+..-| +.+..++-.+..++.++.....
T Consensus 201 ~~~~~~lL~al~ec~EW~qi---~IL~~l-~~y~p~d~-----~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~ 271 (734)
T KOG1061|consen 201 PQLINKLLEALNECTEWGQI---FILDCL-AEYVPKDS-----REAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLK 271 (734)
T ss_pred HHHHHHHHHHHHHhhhhhHH---HHHHHH-HhcCCCCc-----hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHH
Confidence 22344444444333332332 344444 43321111 12234555566656 4566677888888888876555
Q ss_pred hhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhC-CHh-----hHHHHHhCCC-------------------c
Q 015728 266 NRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLA-IEN-----SKDALINNPN-------------------G 320 (401)
Q Consensus 266 n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~-~~~-----~~~~~~~~~g-------------------~ 320 (401)
+....+-...-++|+-+++ ..+ +.+-.|+.=+..+-. .++ .+..++.... -
T Consensus 272 ~~~~~~~~K~~~pl~tlls---~~~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~n 347 (734)
T KOG1061|consen 272 QVNELLFKKVAPPLVTLLS---SES-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDAN 347 (734)
T ss_pred HHHHHHHHHhcccceeeec---ccc-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhH
Confidence 5555555557778888877 333 443333333332221 111 1111111111 1
Q ss_pred HHHHHHHHH---hcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhH
Q 015728 321 VYALVKMVF---RVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWA 395 (401)
Q Consensus 321 i~~Lv~~l~---~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~ 395 (401)
++.++.-+. ..-+......+++++.+++..-++ . .+.|+.|+++++.+ .+.+-+.+...++.+-+++|
T Consensus 348 l~qvl~El~eYatevD~~fvrkaIraig~~aik~e~----~--~~cv~~lLell~~~-~~yvvqE~~vvi~dilRkyP 418 (734)
T KOG1061|consen 348 LAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQ----S--NDCVSILLELLETK-VDYVVQEAIVVIRDILRKYP 418 (734)
T ss_pred HHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhh----h--hhhHHHHHHHHhhc-ccceeeehhHHHHhhhhcCC
Confidence 111111111 112344555677777776543211 1 77888888888876 66666666667776666554
No 183
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=94.85 E-value=0.52 Score=41.36 Aligned_cols=102 Identities=12% Similarity=0.069 Sum_probs=78.0
Q ss_pred ccchHHHHHHHHHHHHhCCHhhHHHHHh---------------CCCcHHHHHHHHHh-----cCChhHHHHHHHHHHHHh
Q 015728 289 RERSLAAIAMARIEQLLAIENSKDALIN---------------NPNGVYALVKMVFR-----VSDHEGSENAINSLMMIC 348 (401)
Q Consensus 289 ~~~~~~~~a~~~L~~La~~~~~~~~~~~---------------~~g~i~~Lv~~l~~-----~~~~~~~~~a~~~L~~l~ 348 (401)
.+......++++|+||+...++...+.. ....+..|++.+.+ .....--++.+.+|.|++
T Consensus 7 ~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS 86 (192)
T PF04063_consen 7 PKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLS 86 (192)
T ss_pred CCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhc
Confidence 4456778899999999999888875541 12367888886666 123356778999999999
Q ss_pred cCCHHHHHHHHH--cCc--HHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728 349 CDSLQAREEAIC--AGV--LTQLLLLLQSQCSNRTKTKARMLLKLLRS 392 (401)
Q Consensus 349 ~~~~~~~~~~~~--~g~--v~~L~~ll~~~~~~~~~~~A~~~L~~l~~ 392 (401)
+. ++.|+-+++ .+. +..|+.++++. +..-|+-++.++|.++=
T Consensus 87 ~~-~~gR~~~l~~~~~~~~l~kLl~ft~~~-s~iRR~Gva~~IrNccF 132 (192)
T PF04063_consen 87 QL-PEGRQFFLDPQRYDGPLQKLLPFTEHK-SVIRRGGVAGTIRNCCF 132 (192)
T ss_pred CC-HHHHHHHhCchhhhhHHHHHHHHhccC-cHHHHHHHHHHHHHhhc
Confidence 87 678877774 344 88899999888 89999999999998764
No 184
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=94.66 E-value=0.045 Score=58.21 Aligned_cols=74 Identities=31% Similarity=0.488 Sum_probs=66.2
Q ss_pred CCCCCCcccccccccccCCceEcC-ccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCCcHHHHHHHHHHHHhCC
Q 015728 6 QMTIPHLFRCPISLDLFTDPVTLC-TGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLRHLINQWLQMGG 80 (401)
Q Consensus 6 ~~~~~~~~~C~iC~~~~~~Pv~~~-Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~n~~l~~~i~~~~~~~~ 80 (401)
..++|++|.=|+...+|+|||.+| .|++.|+.=|.+++- ...+=|.||.+++...+.+|..++..|+.|....+
T Consensus 864 l~dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlL-s~~tdPFNR~pLt~d~v~pn~eLK~kI~~~~~ek~ 938 (943)
T KOG2042|consen 864 LGDVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLL-SDCTDPFNREPLTEDMVSPNEELKAKIRCWIKEKR 938 (943)
T ss_pred hccCchhhhCccccccCCCCccCCcccccccHHHHHHHHh-cCCCCccccccCchhhcCCCHHHHHHHHHHHHHhh
Confidence 345899999999999999999998 999999999999888 45667999999999999999999999999977653
No 185
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.61 E-value=3.7 Score=42.64 Aligned_cols=118 Identities=13% Similarity=0.092 Sum_probs=73.3
Q ss_pred hHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhc
Q 015728 139 LPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISS 218 (401)
Q Consensus 139 i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~ 218 (401)
.+-++.||.++.+. ++..|+. +|..+-...++. + ..++|.|+..|..+++.++..|+.+++.| +.
T Consensus 146 a~Dv~tLL~sskpY--------vRKkAIl-~lykvFLkYPeA---l--r~~FprL~EkLeDpDp~V~SAAV~VICEL-Ar 210 (877)
T KOG1059|consen 146 ADDVFTLLNSSKPY--------VRKKAIL-LLYKVFLKYPEA---L--RPCFPRLVEKLEDPDPSVVSAAVSVICEL-AR 210 (877)
T ss_pred HHHHHHHHhcCchH--------HHHHHHH-HHHHHHHhhhHh---H--hhhHHHHHHhccCCCchHHHHHHHHHHHH-Hh
Confidence 34566777766654 7777877 555444333332 2 24689999999999999999999999999 65
Q ss_pred ccchhhhhhhhccchHHHHHHHHHc--cCCchhHHHHHHHHHHhcCCC-chhHHHHhcCcHHHHHHHHH
Q 015728 219 SHETKELCCKLGKDDRLLREIISLV--HHNSEASDAGVRAFSALCSTE-TNRKTLVQEGAINGLIAYIS 284 (401)
Q Consensus 219 ~~~~~~~~~~i~~~~g~i~~Lv~lL--~~~~~~~~~a~~aL~~Ls~~~-~n~~~iv~~G~v~~Lv~lL~ 284 (401)
.++ +..+ .+-|.+.++| +.+.=+...-.....+|+..+ .-.++ .+|+|..++.
T Consensus 211 KnP----knyL----~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKK-----Lieplt~li~ 266 (877)
T KOG1059|consen 211 KNP----QNYL----QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKK-----LIEPITELME 266 (877)
T ss_pred hCC----cccc----cccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhh-----hhhHHHHHHH
Confidence 432 2333 1237777777 333334555556666666432 22222 4556666654
No 186
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.51 E-value=0.036 Score=52.34 Aligned_cols=64 Identities=25% Similarity=0.388 Sum_probs=50.1
Q ss_pred cccccccccccC------CceEcCccccccHHhHHHHHHcCCCCCCCCcccCC--C---CCCCCcHHHHHHHHHH
Q 015728 12 LFRCPISLDLFT------DPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLH--D---PSIVPNHTLRHLINQW 75 (401)
Q Consensus 12 ~~~C~iC~~~~~------~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~--~---~~~~~n~~l~~~i~~~ 75 (401)
.+.|-||.+.|. .|..+.|||++|..|+..........||.||.+.. . +.+..|+.+...++..
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred CCceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 457999998775 37778899999999999888766777999998842 2 2466788877777776
No 187
>PRK14707 hypothetical protein; Provisional
Probab=94.48 E-value=11 Score=44.14 Aligned_cols=282 Identities=16% Similarity=0.140 Sum_probs=170.4
Q ss_pred CCChhhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHH
Q 015728 89 LATIDSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSC 168 (401)
Q Consensus 89 ~~~~~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~ 168 (401)
+.+.+.+.++...++.=.+ ...+..|+..|.......+.-+..+ +..+|...++.|....+ ..+++.++..
T Consensus 201 ~~~~q~ia~~lNa~sKWp~-~~~c~~aa~~la~~l~~~~~l~~~~-~~q~va~~lN~lsKwp~-------~~~C~~a~~~ 271 (2710)
T PRK14707 201 AMDAQGVATVLNALCKWPD-TPDCGNAVSALAERLADESRLRNEL-KPQELGNALNALSKWAD-------TPVCAAAASA 271 (2710)
T ss_pred ccchHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHcCcHHHHHhC-ChHHHHHHHHHHhcCCC-------chHHHHHHHH
Confidence 3556777777666654433 4467788888888887777666666 55567777777744332 3467777763
Q ss_pred HHHhhcCCchhhhhhcccCCchHHHHHHhhc-CCHH-HHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc--
Q 015728 169 VQKLLLVGETESLNLLNEESKMESFIVLFEH-GSCS-IKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-- 244 (401)
Q Consensus 169 ~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~-~~~~-~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-- 244 (401)
+-..+. ++...++.+ .+..+...+.-|+. .+.. ++..|..+-..| ..+. +.+..+-. .|. .-.+.-|+
T Consensus 272 lA~rl~-~~~~l~~al-~~q~vanalNalSKwpd~~vc~~Aa~~la~rl-~~d~---~l~~~~~~-~~~-~~~LNalsKW 343 (2710)
T PRK14707 272 LAERLV-DDPGLRKAL-DPINVTQALNALSKWADLPVCAEAAIALAERL-ADDP---ELCKALNA-RGL-STALNALSKW 343 (2710)
T ss_pred HHHHHh-hhHHHHHhc-CHHHHHHHHhhhhcCCCchHHHHHHHHHHHHH-hccH---hhhhccch-HHH-HHHHHHhhcC
Confidence 445555 444445555 44556666666643 3444 444444455556 5544 66666533 343 44444453
Q ss_pred CCchhHHHHHHHHH-HhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHH-HHhCCHhhHHHHHhCCCcHH
Q 015728 245 HNSEASDAGVRAFS-ALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIE-QLLAIENSKDALINNPNGVY 322 (401)
Q Consensus 245 ~~~~~~~~a~~aL~-~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~-~La~~~~~~~~~~~~~g~i~ 322 (401)
.+...-..|+.+|. .|+.+++-+..+--.| |...+--|+. =++......|+..|+ .|..+++-+..+ +.-+|.
T Consensus 344 pd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q~-~a~~lNalsK--Wp~~~~c~~aa~~LA~~l~~d~~l~~~~--~~Q~va 418 (2710)
T PRK14707 344 PDNPVCAAAVSALAERLVADPELRKDLEPQG-VSSVLNALSK--WPDTPVCAAAASALAEHVVDDLELRKGL--DPQGVS 418 (2710)
T ss_pred CCchhHHHHHHHHHHHhccCHhhhcccchhH-HHHHHhhhhc--CCCchHHHHHHHHHHHHhccChhhhhhc--chhhHH
Confidence 34444555555555 5777777776665444 4444444442 456666667766666 677788888888 566788
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728 323 ALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS 392 (401)
Q Consensus 323 ~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~ 392 (401)
.++..+.+=.+..+-..++..|..-..++.+.++.+--.++...|=.+-+=+.++.-++.|..+...|..
T Consensus 419 n~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~c~~aa~~La~~l~~ 488 (2710)
T PRK14707 419 NALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPINVTQALDALSKWPDTPICGQTASALAARLAH 488 (2710)
T ss_pred HHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhcCCCChhHHHHHHHHHHHhcc
Confidence 8888777666767788888888776666777776665555444443333334355666555555555543
No 188
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.37 E-value=3.9 Score=42.69 Aligned_cols=238 Identities=13% Similarity=0.095 Sum_probs=132.0
Q ss_pred ChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccC
Q 015728 108 TLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEE 187 (401)
Q Consensus 108 ~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~ 187 (401)
....|..-+..|+..+..++.-+... |..+..+|.+.++. +..+|+. .|..|+.+....+
T Consensus 219 ~~~LqlViVE~Irkv~~~~p~~~~~~-----i~~i~~lL~stssa--------V~fEaa~-tlv~lS~~p~alk------ 278 (948)
T KOG1058|consen 219 NDSLQLVIVELIRKVCLANPAEKARY-----IRCIYNLLSSTSSA--------VIFEAAG-TLVTLSNDPTALK------ 278 (948)
T ss_pred cHHHHHHHHHHHHHHHhcCHHHhhHH-----HHHHHHHHhcCCch--------hhhhhcc-eEEEccCCHHHHH------
Confidence 45678888999999999888665555 77889999888755 8888888 7777774432222
Q ss_pred CchHHHHHHhhc-CCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cCCchhHHHHHHHHHHhcCCCc
Q 015728 188 SKMESFIVLFEH-GSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-HHNSEASDAGVRAFSALCSTET 265 (401)
Q Consensus 188 g~i~~Lv~~L~~-~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~a~~aL~~Ls~~~~ 265 (401)
.+...+++++.. ++-.++.....-|..+ .. .++..+ +|.+--.+++| ..+.++++.++.....|.....
T Consensus 279 ~Aa~~~i~l~~kesdnnvklIvldrl~~l-~~-----~~~~il---~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrN 349 (948)
T KOG1058|consen 279 AAASTYIDLLVKESDNNVKLIVLDRLSEL-KA-----LHEKIL---QGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRN 349 (948)
T ss_pred HHHHHHHHHHHhccCcchhhhhHHHHHHH-hh-----hhHHHH---HHHHHHHHHHcCcccccHHHHHHHHHHhhhhhcc
Confidence 123455555533 2334454444445445 31 223333 36666667777 4677888888888888775433
Q ss_pred hhHHHHhcCcHHHHHH-HHHhh---ccccchHHHHHHHHHHHHhCC-HhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHH
Q 015728 266 NRKTLVQEGAINGLIA-YISNA---LTRERSLAAIAMARIEQLLAI-ENSKDALINNPNGVYALVKMVFRVSDHEGSENA 340 (401)
Q Consensus 266 n~~~iv~~G~v~~Lv~-lL~~~---~~~~~~~~~~a~~~L~~La~~-~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a 340 (401)
...++ ..|-+ +..++ ++.+..-++.-+.+|+..+.. ++... .+|+.|++. +.+.++......
T Consensus 350 -vediv-----~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aa------tvV~~ll~f-isD~N~~aas~v 416 (948)
T KOG1058|consen 350 -VEDIV-----QFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAA------TVVSLLLDF-ISDSNEAAASDV 416 (948)
T ss_pred -HHHHH-----HHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHH------HHHHHHHHH-hccCCHHHHHHH
Confidence 22211 11111 11211 122334566677777766643 33222 347788884 455554333333
Q ss_pred HHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728 341 INSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS 392 (401)
Q Consensus 341 ~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~ 392 (401)
+..+...-...++.| ...+..|++-+..=-+.+.-+.|.|++..-++
T Consensus 417 l~FvrE~iek~p~Lr-----~~ii~~l~~~~~~irS~ki~rgalwi~GeYce 463 (948)
T KOG1058|consen 417 LMFVREAIEKFPNLR-----ASIIEKLLETFPQIRSSKICRGALWILGEYCE 463 (948)
T ss_pred HHHHHHHHHhCchHH-----HHHHHHHHHhhhhhcccccchhHHHHHHHHHh
Confidence 333332222222333 44455555544221255777788888776655
No 189
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=94.27 E-value=0.63 Score=48.17 Aligned_cols=146 Identities=10% Similarity=0.169 Sum_probs=92.8
Q ss_pred hHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhh---hhhccchHHHHHHHHHcc-CCchhHHHHHHHHHHhcCCCc
Q 015728 190 MESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELC---CKLGKDDRLLREIISLVH-HNSEASDAGVRAFSALCSTET 265 (401)
Q Consensus 190 i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~---~~i~~~~g~i~~Lv~lL~-~~~~~~~~a~~aL~~Ls~~~~ 265 (401)
+...++.|++.++.+|++|+.++..| +..- ..| +.++. -| -.|...|. ..+++.-..+.||+.+.....
T Consensus 801 ~stiL~rLnnksa~vRqqaadlis~l-a~Vl---ktc~ee~~m~~-lG--vvLyEylgeeypEvLgsILgAikaI~nvig 873 (1172)
T KOG0213|consen 801 CSTILWRLNNKSAKVRQQAADLISSL-AKVL---KTCGEEKLMGH-LG--VVLYEYLGEEYPEVLGSILGAIKAIVNVIG 873 (1172)
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHH-HHHH---HhccHHHHHHH-hh--HHHHHhcCcccHHHHHHHHHHHHHHHHhcc
Confidence 45556788899999999999999998 5432 222 12222 24 24555563 455666666666665553322
Q ss_pred hhHHH-HhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCC-Hh---hHHHHHhCCCcHHHHHHHHHhcCChhHHHHH
Q 015728 266 NRKTL-VQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAI-EN---SKDALINNPNGVYALVKMVFRVSDHEGSENA 340 (401)
Q Consensus 266 n~~~i-v~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~-~~---~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a 340 (401)
--+.. =-.|.+|.|..+|+ +....++++....+..+|.. ++ .|..+. ..-.|++ +++......+.+|
T Consensus 874 m~km~pPi~dllPrltPILk---nrheKVqen~IdLvg~IadrgpE~v~aREWMR----IcfeLle-lLkahkK~iRRaa 945 (1172)
T KOG0213|consen 874 MTKMTPPIKDLLPRLTPILK---NRHEKVQENCIDLVGTIADRGPEYVSAREWMR----ICFELLE-LLKAHKKEIRRAA 945 (1172)
T ss_pred ccccCCChhhhcccchHhhh---hhHHHHHHHHHHHHHHHHhcCcccCCHHHHHH----HHHHHHH-HHHHHHHHHHHHH
Confidence 11111 12578999999999 56788999999999999964 32 333332 3445777 4555555778888
Q ss_pred HHHHHHHhcC
Q 015728 341 INSLMMICCD 350 (401)
Q Consensus 341 ~~~L~~l~~~ 350 (401)
+..+..|+..
T Consensus 946 ~nTfG~Iaka 955 (1172)
T KOG0213|consen 946 VNTFGYIAKA 955 (1172)
T ss_pred HhhhhHHHHh
Confidence 8877776654
No 190
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.21 E-value=0.032 Score=52.49 Aligned_cols=49 Identities=20% Similarity=0.176 Sum_probs=36.9
Q ss_pred CCCCCCcccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCC
Q 015728 6 QMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLH 58 (401)
Q Consensus 6 ~~~~~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~ 58 (401)
+.+.+...-|-||.+-..+.+.+||||..| |..-.. ....||+|++.+.
T Consensus 299 ~~~~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~--~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 299 FRELPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSK--HLPQCPVCRQRIR 347 (355)
T ss_pred ccccCCCCceEEecCCccceeeecCCcEEE--chHHHh--hCCCCchhHHHHH
Confidence 334556678999999999988899999877 664432 3455999998654
No 191
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=94.17 E-value=0.058 Score=36.15 Aligned_cols=44 Identities=20% Similarity=0.311 Sum_probs=21.6
Q ss_pred ccccccccccCCceEc-Ccccccc--HHhHHHH-HHcCCCCCCCCccc
Q 015728 13 FRCPISLDLFTDPVTL-CTGQTYD--RSSIEKW-LAAGNLTCPVTMQT 56 (401)
Q Consensus 13 ~~C~iC~~~~~~Pv~~-~Cgh~fc--~~Ci~~~-~~~~~~~CP~c~~~ 56 (401)
+.||+....+..|+.- .|.|.-| ..-.... ...+...||.|+++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 6899999999999985 7999644 3222222 22356789999763
No 192
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.16 E-value=1 Score=47.02 Aligned_cols=225 Identities=11% Similarity=0.045 Sum_probs=140.8
Q ss_pred HhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHH-hhcCCchhhhhhcccCCchHHHHHHhhcCC
Q 015728 123 LRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQK-LLLVGETESLNLLNEESKMESFIVLFEHGS 201 (401)
Q Consensus 123 ~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~-~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~ 201 (401)
+.....-|...++.|+...|+.+.....+. ...+... +|. .+...... ....++++...++...
T Consensus 490 aA~~K~~~~~~Ik~~~~~aLlrl~~~q~e~--------akl~~~~-aL~~~i~f~~~~------~~~v~~~~~s~~~~d~ 554 (748)
T KOG4151|consen 490 AAKEKYERAKKIKPGGYEALLRLGQQQFEE--------AKLKWYH-ALAGKIDFPGER------SYEVVKPLDSALHNDE 554 (748)
T ss_pred hhhhHHhcCccccccHHHHHHHHHHHhchH--------HHHHHHH-HHhhhcCCCCCc------hhhhhhhhcchhhhhH
Confidence 334444567777899999999998776543 5555555 444 22221111 1234566666654432
Q ss_pred H-HHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cCCchhHHHHHHHHHHhcCCCch-hHHHHh-cCcHH
Q 015728 202 C-SIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-HHNSEASDAGVRAFSALCSTETN-RKTLVQ-EGAIN 277 (401)
Q Consensus 202 ~-~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~a~~aL~~Ls~~~~n-~~~iv~-~G~v~ 277 (401)
. -..-.+..++.|| +..+. ..|..|....+ ++.+-.++ .+++..+.+++..+.||...+.- ...+++ ...++
T Consensus 555 ~~~en~E~L~altnL-as~s~--s~r~~i~ke~~-~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~ 630 (748)
T KOG4151|consen 555 KGLENFEALEALTNL-ASISE--SDRQKILKEKA-LGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLK 630 (748)
T ss_pred HHHHHHHHHHHhhcc-cCcch--hhHHHHHHHhc-chhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCch
Confidence 2 1224666788888 55442 56666665432 34333334 66777999999999999987774 445566 55788
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHH-HHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHH
Q 015728 278 GLIAYISNALTRERSLAAIAMARIEQLLAIENSKDA-LINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQARE 356 (401)
Q Consensus 278 ~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~-~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 356 (401)
.....+. ..+....-.+++++..+....++... +......-..++. +..+.+...+...+....++...+.+..+
T Consensus 631 ~w~~~~e---~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~-~i~~~~~~~qhrgl~~~ln~~~~~~ei~~ 706 (748)
T KOG4151|consen 631 LWNLNLE---VADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVR-AIQDEDDEIQHRGLVIILNLFEALFEIAE 706 (748)
T ss_pred HHHHHHH---hhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHH-hhcCchhhhhhhhhhhhhhHHHHHHHHHH
Confidence 8888887 55556666666667655544443333 3334455667777 45666778888888888887766667777
Q ss_pred HHHHcCcHHHHHHH
Q 015728 357 EAICAGVLTQLLLL 370 (401)
Q Consensus 357 ~~~~~g~v~~L~~l 370 (401)
.+.....++.+..+
T Consensus 707 ~~~~~~~~~~l~~~ 720 (748)
T KOG4151|consen 707 KIFETEVMELLSGL 720 (748)
T ss_pred HhccchHHHHHHHH
Confidence 77777766666554
No 193
>PRK14707 hypothetical protein; Provisional
Probab=94.16 E-value=15 Score=43.07 Aligned_cols=231 Identities=15% Similarity=0.129 Sum_probs=131.8
Q ss_pred hhhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHH
Q 015728 92 IDSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQK 171 (401)
Q Consensus 92 ~~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~ 171 (401)
++.++.....|+.-.+ ...+..|+..|..-...++.-++.+- .-.+.-.++-|+...+ ..++..|+..+-.
T Consensus 246 ~q~va~~lN~lsKwp~-~~~C~~a~~~lA~rl~~~~~l~~al~-~q~vanalNalSKwpd-------~~vc~~Aa~~la~ 316 (2710)
T PRK14707 246 PQELGNALNALSKWAD-TPVCAAAASALAERLVDDPGLRKALD-PINVTQALNALSKWAD-------LPVCAEAAIALAE 316 (2710)
T ss_pred hHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHhhhHHHHHhcC-HHHHHHHHhhhhcCCC-------chHHHHHHHHHHH
Confidence 3555555454544333 44677777777766666666677763 3335555555543322 3466666663555
Q ss_pred hhcCCchhhhhhcccCCchHHHHHHhhc-C-CHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc--CCc
Q 015728 172 LLLVGETESLNLLNEESKMESFIVLFEH-G-SCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH--HNS 247 (401)
Q Consensus 172 ~l~~~~~~~~~~v~~~g~i~~Lv~~L~~-~-~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~--~~~ 247 (401)
.|. ++.+..+.+ ++-.+...+.-|+. + +..++..|..+-..+ ..+. +.+..+.. .|+ ...+.-|+ .+.
T Consensus 317 rl~-~d~~l~~~~-~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl-~~d~---~l~~~l~~-q~~-a~~lNalsKWp~~ 388 (2710)
T PRK14707 317 RLA-DDPELCKAL-NARGLSTALNALSKWPDNPVCAAAVSALAERL-VADP---ELRKDLEP-QGV-SSVLNALSKWPDT 388 (2710)
T ss_pred HHh-ccHhhhhcc-chHHHHHHHHHhhcCCCchhHHHHHHHHHHHh-ccCH---hhhcccch-hHH-HHHHhhhhcCCCc
Confidence 665 455555555 55667777877754 3 344554444444456 6665 77887754 354 55555553 455
Q ss_pred hhHHHHHHHHHH-hcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHH-HHhCCHhhHHHHHhCCCcHHHHH
Q 015728 248 EASDAGVRAFSA-LCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIE-QLLAIENSKDALINNPNGVYALV 325 (401)
Q Consensus 248 ~~~~~a~~aL~~-Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~-~La~~~~~~~~~~~~~g~i~~Lv 325 (401)
..-..|+.+|.. |..+.+-+..+--.|+-..|-.+-+ =++..+...++..|+ .|+.+.+-+..+ ++-.|...+
T Consensus 389 ~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsK---WPd~~~C~~aa~~lA~~la~d~~l~~~~--~p~~va~~L 463 (2710)
T PRK14707 389 PVCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAK---WPDLPICGQAVSALAGRLAHDTELCKAL--DPINVTQAL 463 (2710)
T ss_pred hHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhc---CCcchhHHHHHHHHHHHHhccHHHHhhc--ChHHHHHHH
Confidence 667777777764 6666666766655554444444444 466667777777666 566666766666 444455555
Q ss_pred HHHHhcCChhHHHHHHHHH
Q 015728 326 KMVFRVSDHEGSENAINSL 344 (401)
Q Consensus 326 ~~l~~~~~~~~~~~a~~~L 344 (401)
..+.+=.+...-..|+..|
T Consensus 464 nalSKWPd~p~c~~aa~~L 482 (2710)
T PRK14707 464 DALSKWPDTPICGQTASAL 482 (2710)
T ss_pred HHhhcCCCChhHHHHHHHH
Confidence 5444433334444444444
No 194
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.15 E-value=8.1 Score=40.18 Aligned_cols=257 Identities=16% Similarity=0.182 Sum_probs=144.9
Q ss_pred HhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchh
Q 015728 100 HSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETE 179 (401)
Q Consensus 100 ~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~ 179 (401)
++|.++++..-.+..|+-+|.++-+.+|+- +...+-+..++.+|.+.+-. +.-.+.. ++..|+..+++
T Consensus 153 KlLvS~~~~~~vkqkaALclL~L~r~spDl---~~~~~W~~riv~LL~D~~~g--------v~ta~~s-Li~~lvk~~p~ 220 (938)
T KOG1077|consen 153 KLLVSGSSMDYVKQKAALCLLRLFRKSPDL---VNPGEWAQRIVHLLDDQHMG--------VVTAATS-LIEALVKKNPE 220 (938)
T ss_pred HHHhCCcchHHHHHHHHHHHHHHHhcCccc---cChhhHHHHHHHHhCccccc--------eeeehHH-HHHHHHHcCCH
Confidence 667788888888888888999998887742 22235677888888766533 4444444 55555533332
Q ss_pred -hhhhcccCCchHHHHHHhhc-------------CCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc--
Q 015728 180 -SLNLLNEESKMESFIVLFEH-------------GSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-- 243 (401)
Q Consensus 180 -~~~~v~~~g~i~~Lv~~L~~-------------~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-- 243 (401)
.+..+. -++..|...... +.+=.+....++|.++ -.-++ ...+.. .++.|=.+|
T Consensus 221 ~yk~~~~--~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~-p~~~D-~~~r~~------l~evl~~iLnk 290 (938)
T KOG1077|consen 221 SYKTCLP--LAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIY-PTPED-PSTRAR------LNEVLERILNK 290 (938)
T ss_pred HHhhhHH--HHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhC-CCCCC-chHHHH------HHHHHHHHHhc
Confidence 222220 112222222111 2334555566666555 22111 022222 223333333
Q ss_pred -cC---Cc-h----hHHHHHHHHHHhcCC-CchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHH
Q 015728 244 -HH---NS-E----ASDAGVRAFSALCST-ETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDA 313 (401)
Q Consensus 244 -~~---~~-~----~~~~a~~aL~~Ls~~-~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~ 313 (401)
++ +. . ++-+.+--..+|... ++....+++ ++..|-++|. +.+..++=.|+..++.|+.+......
T Consensus 291 ~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~--~~~~Lg~fls---~rE~NiRYLaLEsm~~L~ss~~s~da 365 (938)
T KOG1077|consen 291 AQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSR--AVNQLGQFLS---HRETNIRYLALESMCKLASSEFSIDA 365 (938)
T ss_pred cccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHH--HHHHHHHHhh---cccccchhhhHHHHHHHHhccchHHH
Confidence 21 11 1 222233333455543 334444444 6788888888 56677888899999999987666655
Q ss_pred HHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHh
Q 015728 314 LINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSK 393 (401)
Q Consensus 314 ~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~ 393 (401)
+-.+ ....+..|-...+..+++.|+..|..+|.. +..+.+ |.-|++.+.+. +...|+.-.--...|++.
T Consensus 366 vK~h---~d~Ii~sLkterDvSirrravDLLY~mcD~--~Nak~I-----V~elLqYL~tA-d~sireeivlKvAILaEK 434 (938)
T KOG1077|consen 366 VKKH---QDTIINSLKTERDVSIRRRAVDLLYAMCDV--SNAKQI-----VAELLQYLETA-DYSIREEIVLKVAILAEK 434 (938)
T ss_pred HHHH---HHHHHHHhccccchHHHHHHHHHHHHHhch--hhHHHH-----HHHHHHHHhhc-chHHHHHHHHHHHHHHHH
Confidence 5322 445555332256778999999999999965 333344 34466766665 777777766656666654
Q ss_pred h
Q 015728 394 W 394 (401)
Q Consensus 394 ~ 394 (401)
+
T Consensus 435 y 435 (938)
T KOG1077|consen 435 Y 435 (938)
T ss_pred h
Confidence 3
No 195
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=94.07 E-value=0.014 Score=51.35 Aligned_cols=47 Identities=19% Similarity=0.332 Sum_probs=36.7
Q ss_pred Cccccccccc-ccCCceE----cC-ccccccHHhHHHHHHcCCCCCC--CCcccC
Q 015728 11 HLFRCPISLD-LFTDPVT----LC-TGQTYDRSSIEKWLAAGNLTCP--VTMQTL 57 (401)
Q Consensus 11 ~~~~C~iC~~-~~~~Pv~----~~-Cgh~fc~~Ci~~~~~~~~~~CP--~c~~~~ 57 (401)
.+-.||+|.. .+-.|-. -| |-|..|.+|+.+.|..|+..|| .|++-+
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kIL 63 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKIL 63 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHH
Confidence 4568999997 3344432 24 9999999999999999999999 677654
No 196
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.02 E-value=9.4 Score=40.23 Aligned_cols=212 Identities=15% Similarity=0.219 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHhhcCCchhhhhhcc----------cCCch----HHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhh
Q 015728 160 QFVEESLSCVQKLLLVGETESLNLLN----------EESKM----ESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKEL 225 (401)
Q Consensus 160 ~~~~~a~~~~L~~l~~~~~~~~~~v~----------~~g~i----~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~ 225 (401)
.+++.|+. +|..+-.+++++.+-|+ ++.++ ..++++|+..+..+|.+|...++.| -.. .|
T Consensus 309 ~Lrvlain-iLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~l-vn~----~N 382 (866)
T KOG1062|consen 309 GLRVLAIN-ILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYAL-VNE----SN 382 (866)
T ss_pred hHHHHHHH-HHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH-hcc----cc
Confidence 36777777 66666656655444431 12222 2456788888888999888888888 322 33
Q ss_pred hhhhccchHHHHHHHHHc-cCCchhHHHHHHHHHHhc--CCCchhHHH-------------HhcCcHHHHHHHHHhhccc
Q 015728 226 CCKLGKDDRLLREIISLV-HHNSEASDAGVRAFSALC--STETNRKTL-------------VQEGAINGLIAYISNALTR 289 (401)
Q Consensus 226 ~~~i~~~~g~i~~Lv~lL-~~~~~~~~~a~~aL~~Ls--~~~~n~~~i-------------v~~G~v~~Lv~lL~~~~~~ 289 (401)
-. .++..|+..| +.+.+.+...+.-+..++ ..+++++.| |...++..++.++.+ +
T Consensus 383 v~------~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~---~ 453 (866)
T KOG1062|consen 383 VR------VMVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIAN---A 453 (866)
T ss_pred HH------HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhc---C
Confidence 33 3456667777 446667777777788777 467776653 344578889999984 2
Q ss_pred cchHHHHHHHHHHHHh-C------C------------HhhHHHHH-----------hCCCcHHHHHHHHHhc-CChhHHH
Q 015728 290 ERSLAAIAMARIEQLL-A------I------------ENSKDALI-----------NNPNGVYALVKMVFRV-SDHEGSE 338 (401)
Q Consensus 290 ~~~~~~~a~~~L~~La-~------~------------~~~~~~~~-----------~~~g~i~~Lv~~l~~~-~~~~~~~ 338 (401)
..+..+.+...|+.-. . . +|+-..++ .+..++..|-+.+... ++...+.
T Consensus 454 ~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~ 533 (866)
T KOG1062|consen 454 FQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKG 533 (866)
T ss_pred CcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHH
Confidence 2222222222222111 0 0 11111111 1123555565643333 4567788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728 339 NAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS 392 (401)
Q Consensus 339 ~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~ 392 (401)
+|+.+|.-|+..-... ..-|..|+.-....-+...+++|...=-++.+
T Consensus 534 yal~Al~KLSsr~~s~------~~ri~~lI~~~~~s~~~elQQRa~E~~~l~~~ 581 (866)
T KOG1062|consen 534 YALTALLKLSSRFHSS------SERIKQLISSYKSSLDTELQQRAVEYNALFAK 581 (866)
T ss_pred HHHHHHHHHHhhcccc------HHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Confidence 8999998886542211 11233344333333345666666655444433
No 197
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=93.92 E-value=0.96 Score=45.93 Aligned_cols=195 Identities=13% Similarity=0.154 Sum_probs=111.2
Q ss_pred hcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhh-------ccc---------CCchHHHHHHhh
Q 015728 135 QLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNL-------LNE---------ESKMESFIVLFE 198 (401)
Q Consensus 135 ~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~-------v~~---------~g~i~~Lv~~L~ 198 (401)
.+|.+...+..|-...-. ....+.-...++..+...+..-.-+ ++. +-.|+..+..|+
T Consensus 541 ~a~~vsri~~~lg~~~~d------Erleerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~ 614 (975)
T COG5181 541 NAGLVSRIFSRLGRLGFD------ERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKPHLSMIVSTILKLLR 614 (975)
T ss_pred hhHHHHHHHHhccccccc------HHHHHHHHHHHHHHHHhccccccEEEecccceeeehhhccCcchHHHHHHHHHHhc
Confidence 567888888887432211 2334444444555554322211111 111 123556667888
Q ss_pred cCCHHHHHHHHHHHHHHHhcccchhhhhh---hhccchHHHHHHHHHcc-CCchhHHHHHHHHHHhcCCCchhHHH-Hhc
Q 015728 199 HGSCSIKKRLCHLVEVIISSSHETKELCC---KLGKDDRLLREIISLVH-HNSEASDAGVRAFSALCSTETNRKTL-VQE 273 (401)
Q Consensus 199 ~~~~~~~~~aa~~L~~l~s~~~~~~~~~~---~i~~~~g~i~~Lv~lL~-~~~~~~~~a~~aL~~Ls~~~~n~~~i-v~~ 273 (401)
+..+.+|++|+.+...| +..- .++. .+... | ..|..-|. ..+++.-..+.|++.+.+...-+.-- =-.
T Consensus 615 ~k~p~vR~~aadl~~sl-~~vl---k~c~e~~~l~kl-g--~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~ 687 (975)
T COG5181 615 SKPPDVRIRAADLMGSL-AKVL---KACGETKELAKL-G--NILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPIS 687 (975)
T ss_pred CCCccHHHHHHHHHHHH-HHHH---HhcchHHHHHHH-h--HHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchh
Confidence 99999999999998888 4321 1111 11111 2 23334443 34567777777777665444322111 126
Q ss_pred CcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCH-h---hHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhc
Q 015728 274 GAINGLIAYISNALTRERSLAAIAMARIEQLLAIE-N---SKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICC 349 (401)
Q Consensus 274 G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~-~---~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~ 349 (401)
|++|.|..+|+ +....++++..+.+..+|... + -|..+. ..-.|++ ++++-+.+.+.+|...+..|+.
T Consensus 688 ~ilP~ltPILr---nkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR----IcfeLvd-~Lks~nKeiRR~A~~tfG~Is~ 759 (975)
T COG5181 688 GILPSLTPILR---NKHQKVVANTIALVGTICMNSPEYIGVREWMR----ICFELVD-SLKSWNKEIRRNATETFGCISR 759 (975)
T ss_pred hccccccHhhh---hhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH----HHHHHHH-HHHHhhHHHHHhhhhhhhhHHh
Confidence 89999999999 567788899888888888643 2 233332 2345777 4555555778888777766654
Q ss_pred C
Q 015728 350 D 350 (401)
Q Consensus 350 ~ 350 (401)
.
T Consensus 760 a 760 (975)
T COG5181 760 A 760 (975)
T ss_pred h
Confidence 3
No 198
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.91 E-value=0.023 Score=40.74 Aligned_cols=45 Identities=27% Similarity=0.431 Sum_probs=31.8
Q ss_pred cccccccccCC-ceEc-CccccccHHhHHHHHHc--CCCCCCCCcccCC
Q 015728 14 RCPISLDLFTD-PVTL-CTGQTYDRSSIEKWLAA--GNLTCPVTMQTLH 58 (401)
Q Consensus 14 ~C~iC~~~~~~-Pv~~-~Cgh~fc~~Ci~~~~~~--~~~~CP~c~~~~~ 58 (401)
.||-|.-.=.+ |... .|.|.|-..||.+|+.. ....||.||+.+.
T Consensus 33 ~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 33 CCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred cCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 44444433322 5555 49999999999999985 3467999998754
No 199
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.89 E-value=0.034 Score=51.88 Aligned_cols=48 Identities=17% Similarity=0.083 Sum_probs=38.6
Q ss_pred CCcccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCC
Q 015728 10 PHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLH 58 (401)
Q Consensus 10 ~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~ 58 (401)
.++-.||||----...|..||+|.-|..||.+++. ..+.|-.|+..+.
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlm-N~k~CFfCktTv~ 467 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLM-NCKRCFFCKTTVI 467 (489)
T ss_pred cccccCcceecccchhhccCCCCchHHHHHHHHHh-cCCeeeEecceee
Confidence 36778999987666677789999999999999988 5667888866543
No 200
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=93.78 E-value=0.55 Score=40.82 Aligned_cols=146 Identities=19% Similarity=0.216 Sum_probs=86.8
Q ss_pred cHHHHHHHHHHHHhCCCCCCCCCC--C--CChhhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchh-hhHHHhcCCh
Q 015728 65 NHTLRHLINQWLQMGGGQHFDPNY--L--ATIDSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPA-SNCLIQLGFL 139 (401)
Q Consensus 65 n~~l~~~i~~~~~~~~~~~~~~~~--~--~~~~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~-r~~i~~~G~i 139 (401)
...-..+|..+...+......+.+ . ........+++.|.+...+ ...+..|+...+..+.. -+.+++.||+
T Consensus 34 ~ekKw~li~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~L~~~~~~----~~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~ 109 (187)
T PF06371_consen 34 PEKKWQLIQQHRQKQAKHSSSSSKSKSKASAKSSPEWYIKKLKSRPST----SKILKSLRVSLRTNPISWVQEFLELGGL 109 (187)
T ss_dssp HHHHHHHHHHHHHH-----------------CHHHHHHHHHHTTT--H----HHHHHHHHHHHHHS-HHHHHHH-HHHHH
T ss_pred HHHHHHHHHhHHHhccccchhhhhhhhhhhhhhhHHHHHHHHHccCcc----HHHHHHHHHHhccCCchHHHHhccCCCH
Confidence 334456666666655322211121 1 1124555566666544322 27888888888887653 4466688999
Q ss_pred HHHHHHhccCCccc-chhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHH
Q 015728 140 PLLLKQLFGKAESK-FSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVI 215 (401)
Q Consensus 140 ~~Lv~lL~s~~~~~-~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l 215 (401)
..|+.+|..-.... ....+.+.+..++.|+ ..|.....+...++...+.+..++..|.+.+..++..+..+|..+
T Consensus 110 ~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Cl-kal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~l 185 (187)
T PF06371_consen 110 EALLNVLSKLNKKKEKSEEDIDIEHECLRCL-KALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAAL 185 (187)
T ss_dssp HHHHHHHHHHHTHHCTCTTCHHHHHHHHHHH-HHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhcchhHHHHHHHHHHH-HHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 99999996432210 0012356788888854 445545556666777889999999999999999999998888766
No 201
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=93.76 E-value=1.7 Score=40.19 Aligned_cols=239 Identities=16% Similarity=0.105 Sum_probs=128.1
Q ss_pred cHHHHHHHHHHHHhCCCCCCCCCCCCChhhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHH
Q 015728 65 NHTLRHLINQWLQMGGGQHFDPNYLATIDSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLK 144 (401)
Q Consensus 65 n~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~ 144 (401)
...+..++.++++-|... .++.+++++.+..+.+.+....++.. ... .... .+..+..
T Consensus 13 ~~n~~~i~~KL~efn~~~--~~~~~l~~~el~~L~~~~~~~~~~~~------------------~~~-~~~~-~~~~~~~ 70 (268)
T PF08324_consen 13 QANLDKILKKLKEFNEKL--QKELKLSEEELESLESLLSALKSTSA------------------YHS-DLSA-WLILLLK 70 (268)
T ss_dssp ---HHHHHHHHHHHHTTS--HCCT-S-HHHHHHHHHHHCCCCCC-S------------------S----HHH-HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC--ccccCCCHHHHHHHHHHHHHhcCCCc------------------ccc-chhH-HHHHHHH
Confidence 345677888888877432 34446777777777666653332211 000 1111 1344555
Q ss_pred HhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCCc-hHHHHHHhhc----CCHHHHHHHHHHHHHHHhcc
Q 015728 145 QLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESK-MESFIVLFEH----GSCSIKKRLCHLVEVIISSS 219 (401)
Q Consensus 145 lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~-i~~Lv~~L~~----~~~~~~~~aa~~L~~l~s~~ 219 (401)
++.+.... -+.=++- +++.+..+.....-.-...++ ...+..++.. .....+.-+.+++.|+ =..
T Consensus 71 ~~~~Wp~~--------~~fP~lD-LlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~Nl-F~~ 140 (268)
T PF08324_consen 71 ILLSWPPE--------SRFPALD-LLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANL-FSH 140 (268)
T ss_dssp HHCCS-CC--------C-HHHHH-HHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHH-TTS
T ss_pred HHHhCCCc--------cchhHHh-HHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHh-hCC
Confidence 55443322 4566667 888777666544322222222 3444444433 3567778889999998 444
Q ss_pred cchhhhhhhhccchH-HHHHHHHHc-cC----CchhHHHHHHHHHHhcCCC-chh-HHHHhcCcHHHHHHHHHhhccccc
Q 015728 220 HETKELCCKLGKDDR-LLREIISLV-HH----NSEASDAGVRAFSALCSTE-TNR-KTLVQEGAINGLIAYISNALTRER 291 (401)
Q Consensus 220 ~~~~~~~~~i~~~~g-~i~~Lv~lL-~~----~~~~~~~a~~aL~~Ls~~~-~n~-~~iv~~G~v~~Lv~lL~~~~~~~~ 291 (401)
. ..+..+....+ .|...+..+ .. +..++.+++..++|++..- .++ ..-.+...+..+++.+... ..++
T Consensus 141 ~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~-~~d~ 216 (268)
T PF08324_consen 141 P---PGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSRE-ESDE 216 (268)
T ss_dssp C---CCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCC-HTSH
T ss_pred C---ccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccc-cCCH
Confidence 3 55666665544 344444434 22 3449999999999998422 222 1112223556666644321 3578
Q ss_pred hHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHH-hcCChhHHHHH
Q 015728 292 SLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVF-RVSDHEGSENA 340 (401)
Q Consensus 292 ~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~-~~~~~~~~~~a 340 (401)
+..-.++.+|.+|...+.........-|+-..+-+ .. ...+++.++.+
T Consensus 217 Ea~~R~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~-~~~~~~e~ri~~v~ 265 (268)
T PF08324_consen 217 EALYRLLVALGTLLSSSDSAKQLAKSLDVKSVLSK-KANKSKEPRIKEVA 265 (268)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHCCCCTHHHHHHH-HHHHTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHhccChhHHHHHHHcChHHHHHH-HHhcccchHHHHHh
Confidence 89999999999999877777777533344333333 33 22344555544
No 202
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=93.72 E-value=2.5 Score=38.16 Aligned_cols=143 Identities=12% Similarity=0.058 Sum_probs=94.0
Q ss_pred hHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhh--ccccchHHHHHHHHHHHHhCCHh-hHHHHHhCCCcHHHHH
Q 015728 249 ASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNA--LTRERSLAAIAMARIEQLLAIEN-SKDALINNPNGVYALV 325 (401)
Q Consensus 249 ~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~--~~~~~~~~~~a~~~L~~La~~~~-~~~~~~~~~g~i~~Lv 325 (401)
-.-+|+..|--++++++.|..++++-.=-.|-.+|.+. ..+.+.++-.+++++..|...++ +-..+....++||-.+
T Consensus 95 RVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCL 174 (293)
T KOG3036|consen 95 RVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCL 174 (293)
T ss_pred hHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHH
Confidence 45667777777889999999999998766777777542 12345688889999999997543 4444445889999999
Q ss_pred HHHHhcCChhHHHHHHHHHHHHhcCCH---HHHHHHHHcCcH----HHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728 326 KMVFRVSDHEGSENAINSLMMICCDSL---QAREEAICAGVL----TQLLLLLQSQCSNRTKTKARMLLKLLRS 392 (401)
Q Consensus 326 ~~l~~~~~~~~~~~a~~~L~~l~~~~~---~~~~~~~~~g~v----~~L~~ll~~~~~~~~~~~A~~~L~~l~~ 392 (401)
+ ++..|++..+..|..++.-|-.++. -+.+..-+.-+| ..++.-+-+.++.+.-+.+....-.|+.
T Consensus 175 r-ime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsd 247 (293)
T KOG3036|consen 175 R-IMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSD 247 (293)
T ss_pred H-HHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Confidence 9 6777887889999999987765542 112222222222 2233323333366665555555544444
No 203
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=93.71 E-value=4.5 Score=41.01 Aligned_cols=202 Identities=15% Similarity=0.147 Sum_probs=103.1
Q ss_pred HHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHH
Q 015728 115 IVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKMESFI 194 (401)
Q Consensus 115 a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv 194 (401)
-++....+...+++.+..+ .|.|-.-|++.... ++-+++. .+..++..+- .-+.+ ...|+.|-
T Consensus 247 lvr~~~~ll~~n~q~~~q~-----rpfL~~wls~k~em--------V~lE~Ar-~v~~~~~~nv-~~~~~--~~~vs~L~ 309 (898)
T COG5240 247 LVRATVELLKENSQALLQL-----RPFLNSWLSDKFEM--------VFLEAAR-AVCALSEENV-GSQFV--DQTVSSLR 309 (898)
T ss_pred hHHHHHHHHHhChHHHHHH-----HHHHHHHhcCcchh--------hhHHHHH-HHHHHHHhcc-CHHHH--HHHHHHHH
Confidence 3444445555555544444 45565666555433 7777777 5555553221 11222 23577777
Q ss_pred HHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHccCCchhHHHHHHHHHHhcCCCchhHHHHhcC
Q 015728 195 VLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHHNSEASDAGVRAFSALCSTETNRKTLVQEG 274 (401)
Q Consensus 195 ~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G 274 (401)
.+|++.....|-.|.++|-.| +... -+.+...+-=++.|+. +.+......|...|.. ..++++..+++.
T Consensus 310 ~fL~s~rv~~rFsA~Riln~l-am~~-----P~kv~vcN~evEsLIs--d~Nr~IstyAITtLLK-TGt~e~idrLv~-- 378 (898)
T COG5240 310 TFLKSTRVVLRFSAMRILNQL-AMKY-----PQKVSVCNKEVESLIS--DENRTISTYAITTLLK-TGTEETIDRLVN-- 378 (898)
T ss_pred HHHhcchHHHHHHHHHHHHHH-HhhC-----CceeeecChhHHHHhh--cccccchHHHHHHHHH-cCchhhHHHHHH--
Confidence 888888889999999999999 7654 2333332222333332 2233344455444443 245556666554
Q ss_pred cHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHH
Q 015728 275 AINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQA 354 (401)
Q Consensus 275 ~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~ 354 (401)
.||..++=++ +..+..+..++..|+-.-..++... +.-|...|...+.-+-+..++.++..+-.+.++.
T Consensus 379 ~I~sfvhD~S------D~FKiI~ida~rsLsl~Fp~k~~s~-----l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~s 447 (898)
T COG5240 379 LIPSFVHDMS------DGFKIIAIDALRSLSLLFPSKKLSY-----LDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDS 447 (898)
T ss_pred HHHHHHHhhc------cCceEEeHHHHHHHHhhCcHHHHHH-----HHHHHHHHHhcccchHHHHHHHHHHHHHhhCchH
Confidence 3555555444 2344455556666654322222111 2223333333344445555555555555444444
Q ss_pred H
Q 015728 355 R 355 (401)
Q Consensus 355 ~ 355 (401)
+
T Consensus 448 k 448 (898)
T COG5240 448 K 448 (898)
T ss_pred H
Confidence 4
No 204
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=93.66 E-value=2.1 Score=43.64 Aligned_cols=151 Identities=8% Similarity=0.040 Sum_probs=91.8
Q ss_pred ChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhh--hhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHH
Q 015728 138 FLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETES--LNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVI 215 (401)
Q Consensus 138 ~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~--~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l 215 (401)
.|...+++|++..+. ++++|+. +...|+---..+ .+.+..-|. .|.+-|....+++.-....+++.+
T Consensus 605 ivStiL~~L~~k~p~--------vR~~aad-l~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I 673 (975)
T COG5181 605 IVSTILKLLRSKPPD--------VRIRAAD-LMGSLAKVLKACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSI 673 (975)
T ss_pred HHHHHHHHhcCCCcc--------HHHHHHH-HHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHH
Confidence 466777888888754 8888888 766554100000 111212222 234455566777776666677777
Q ss_pred HhcccchhhhhhhhccchHHHHHHHHHccCC-chhHHHHHHHHHHhcCCCchhHHHHhc-CcHHHHHHHHHhhccccchH
Q 015728 216 ISSSHETKELCCKLGKDDRLLREIISLVHHN-SEASDAGVRAFSALCSTETNRKTLVQE-GAINGLIAYISNALTRERSL 293 (401)
Q Consensus 216 ~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~-~~~~~~a~~aL~~Ls~~~~n~~~iv~~-G~v~~Lv~lL~~~~~~~~~~ 293 (401)
++.. ..+..--...|++|.|..+|+.. ..++.+....+..++.+........+. -+---|++.|. +-+.+.
T Consensus 674 ~sv~----~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lk---s~nKei 746 (975)
T COG5181 674 YSVH----RFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLK---SWNKEI 746 (975)
T ss_pred hhhh----cccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHH---HhhHHH
Confidence 4433 22221112358999999999654 458888888888888654432222221 14455788888 567788
Q ss_pred HHHHHHHHHHHhC
Q 015728 294 AAIAMARIEQLLA 306 (401)
Q Consensus 294 ~~~a~~~L~~La~ 306 (401)
+.+|..++..++.
T Consensus 747 RR~A~~tfG~Is~ 759 (975)
T COG5181 747 RRNATETFGCISR 759 (975)
T ss_pred HHhhhhhhhhHHh
Confidence 8888888887775
No 205
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=93.66 E-value=0.87 Score=41.73 Aligned_cols=99 Identities=12% Similarity=0.113 Sum_probs=73.9
Q ss_pred hHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCC
Q 015728 109 LETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEES 188 (401)
Q Consensus 109 ~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g 188 (401)
......|++.|+-++--+|.-|..+.+...+..|+.+|....+ +.++-.++.+++..|. ++..+.+...+.+
T Consensus 105 ~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~-------~~i~~a~L~tLv~iLl-d~p~N~r~FE~~~ 176 (257)
T PF08045_consen 105 DSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNP-------PAIQSACLDTLVCILL-DSPENQRDFEELN 176 (257)
T ss_pred hHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCC-------chHHHHHHHHHHHHHH-cChHHHHHHHHhC
Confidence 3346668899999999999999999999999999999944332 4588888884555554 5555545666889
Q ss_pred chHHHHHHhhcC--CHHHHHHHHHHHHHH
Q 015728 189 KMESFIVLFEHG--SCSIKKRLCHLVEVI 215 (401)
Q Consensus 189 ~i~~Lv~~L~~~--~~~~~~~aa~~L~~l 215 (401)
|+..++.++++. +.+++-.....|.-.
T Consensus 177 Gl~~v~~llk~~~~~~~~r~K~~EFL~fy 205 (257)
T PF08045_consen 177 GLSTVCSLLKSKSTDRELRLKCIEFLYFY 205 (257)
T ss_pred CHHHHHHHHccccccHHHhHHHHHHHHHH
Confidence 999999999865 346666666655443
No 206
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=93.58 E-value=2.8 Score=43.67 Aligned_cols=150 Identities=7% Similarity=0.064 Sum_probs=86.9
Q ss_pred hHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhh--hhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 015728 139 LPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETES--LNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVII 216 (401)
Q Consensus 139 i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~--~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~ 216 (401)
+...+..|++.+ ++++.+|+. +...++.-=..+ -+.+..-|. .|.+.|....+++.-....+|+.++
T Consensus 801 ~stiL~rLnnks--------a~vRqqaad-lis~la~Vlktc~ee~~m~~lGv--vLyEylgeeypEvLgsILgAikaI~ 869 (1172)
T KOG0213|consen 801 CSTILWRLNNKS--------AKVRQQAAD-LISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEYPEVLGSILGAIKAIV 869 (1172)
T ss_pred HHHHHHHhcCCC--------hhHHHHHHH-HHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcccHHHHHHHHHHHHHHH
Confidence 344455566655 447777777 666554110000 112222232 2446666677777765555666653
Q ss_pred hcccchhhhhhhhccchHHHHHHHHHccCC-chhHHHHHHHHHHhcCCCchhHHHHhc-CcHHHHHHHHHhhccccchHH
Q 015728 217 SSSHETKELCCKLGKDDRLLREIISLVHHN-SEASDAGVRAFSALCSTETNRKTLVQE-GAINGLIAYISNALTRERSLA 294 (401)
Q Consensus 217 s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~-~~~~~~a~~aL~~Ls~~~~n~~~iv~~-G~v~~Lv~lL~~~~~~~~~~~ 294 (401)
+..+ .....-...|++|.|..+|+.. ..++.+....+..++..........+. -+---|+++|. .-+.+.+
T Consensus 870 nvig----m~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLk---ahkK~iR 942 (1172)
T KOG0213|consen 870 NVIG----MTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLK---AHKKEIR 942 (1172)
T ss_pred Hhcc----ccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 3322 1111112358899999999654 459999999999999544322222221 24456888888 4567788
Q ss_pred HHHHHHHHHHhC
Q 015728 295 AIAMARIEQLLA 306 (401)
Q Consensus 295 ~~a~~~L~~La~ 306 (401)
.+|..++..++.
T Consensus 943 Raa~nTfG~Iak 954 (1172)
T KOG0213|consen 943 RAAVNTFGYIAK 954 (1172)
T ss_pred HHHHhhhhHHHH
Confidence 888888888775
No 207
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=93.55 E-value=0.22 Score=47.99 Aligned_cols=50 Identities=26% Similarity=0.462 Sum_probs=42.2
Q ss_pred ccccccccccCCceEcC-ccccccHHhHHHHHHcCCCCCCCCcccCCCCCCC
Q 015728 13 FRCPISLDLFTDPVTLC-TGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIV 63 (401)
Q Consensus 13 ~~C~iC~~~~~~Pv~~~-Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~ 63 (401)
+.|.|.+++-.+||..+ .||.|.++-|+++.. ....||..+++++.+++.
T Consensus 1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~-e~G~DPIt~~pLs~eelV 51 (506)
T KOG0289|consen 1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIA-ETGKDPITNEPLSIEELV 51 (506)
T ss_pred CeecccCCCCCCccccccccchHHHHHHHHHHH-HcCCCCCCCCcCCHHHee
Confidence 46999999999999865 999999999999998 456799998888765443
No 208
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.54 E-value=0.016 Score=52.57 Aligned_cols=41 Identities=24% Similarity=0.282 Sum_probs=33.4
Q ss_pred cccccccccccCCceEcCccccc-cHHhHHHHHHcCCCCCCCCcccC
Q 015728 12 LFRCPISLDLFTDPVTLCTGQTY-DRSSIEKWLAAGNLTCPVTMQTL 57 (401)
Q Consensus 12 ~~~C~iC~~~~~~Pv~~~Cgh~f-c~~Ci~~~~~~~~~~CP~c~~~~ 57 (401)
+..|.||++.-.|-+.++|||.. |-.|-.+ -..||.||+.+
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkr-----m~eCPICRqyi 341 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKR-----MNECPICRQYI 341 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhccc-----cccCchHHHHH
Confidence 67899999999999999999954 7777533 34699998754
No 209
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.51 E-value=1.6 Score=45.39 Aligned_cols=248 Identities=15% Similarity=0.118 Sum_probs=143.7
Q ss_pred ChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccC
Q 015728 108 TLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEE 187 (401)
Q Consensus 108 ~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~ 187 (401)
+.+.|+-.-.-|.+-+...|.- ..+++..+++ ...++ ++.++--|+. .+..+..+ +++ .
T Consensus 62 dlelKKlvyLYl~nYa~~~P~~-----a~~avnt~~k--D~~d~------np~iR~lAlr-tm~~l~v~-----~i~--e 120 (734)
T KOG1061|consen 62 DLELKKLVYLYLMNYAKGKPDL-----AILAVNTFLK--DCEDP------NPLIRALALR-TMGCLRVD-----KIT--E 120 (734)
T ss_pred CchHHHHHHHHHHHhhccCchH-----HHhhhhhhhc--cCCCC------CHHHHHHHhh-ceeeEeeh-----HHH--H
Confidence 4556665556666666665522 1223444433 22222 3667777777 55544321 122 1
Q ss_pred CchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhHHHHHHHHHHhcCCCch
Q 015728 188 SKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEASDAGVRAFSALCSTETN 266 (401)
Q Consensus 188 g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~a~~aL~~Ls~~~~n 266 (401)
-...++...++++++.+|..++..+.++ -..+ .... ...|+++.|-.++. +++.+..+|+.+|..+...+.+
T Consensus 121 y~~~Pl~~~l~d~~~yvRktaa~~vakl-~~~~-----~~~~-~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~ 193 (734)
T KOG1061|consen 121 YLCDPLLKCLKDDDPYVRKTAAVCVAKL-FDID-----PDLV-EDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPS 193 (734)
T ss_pred HHHHHHHHhccCCChhHHHHHHHHHHHh-hcCC-----hhhc-cccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCC
Confidence 2478899999999999999998888887 4332 3333 34599999999995 5677999999999999854432
Q ss_pred --hHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhC---CHh-hHHHHHhCCCcHHHHHHHHHhcCChhHHHHH
Q 015728 267 --RKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLA---IEN-SKDALINNPNGVYALVKMVFRVSDHEGSENA 340 (401)
Q Consensus 267 --~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~---~~~-~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a 340 (401)
-.. ...-.+..++..|. +...=.-+.+|..|+. .++ ....+ +..+.. -+.+.++.+.-.+
T Consensus 194 ~~~~~-l~~~~~~~lL~al~------ec~EW~qi~IL~~l~~y~p~d~~ea~~i------~~r~~p-~Lqh~n~avvlsa 259 (734)
T KOG1061|consen 194 VNLLE-LNPQLINKLLEALN------ECTEWGQIFILDCLAEYVPKDSREAEDI------CERLTP-RLQHANSAVVLSA 259 (734)
T ss_pred CCccc-ccHHHHHHHHHHHH------HhhhhhHHHHHHHHHhcCCCCchhHHHH------HHHhhh-hhccCCcceEeeh
Confidence 111 11112223333333 1111112223333332 211 22222 223333 2344455677778
Q ss_pred HHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHHhhcc
Q 015728 341 INSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAEELKH 400 (401)
Q Consensus 341 ~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e~~~~ 400 (401)
+.++..+...-.+ ....+-...-++|+.++..+ + +..-.|..=++.+-.+.|+.+++
T Consensus 260 vKv~l~~~~~~~~-~~~~~~~K~~~pl~tlls~~-~-e~qyvaLrNi~lil~~~p~~~~~ 316 (734)
T KOG1061|consen 260 VKVILQLVKYLKQ-VNELLFKKVAPPLVTLLSSE-S-EIQYVALRNINLILQKRPEILKV 316 (734)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHhcccceeeeccc-c-hhhHHHHhhHHHHHHhChHHHHh
Confidence 8888887765444 44566667778888888666 4 77777777777777777776653
No 210
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=93.48 E-value=8.4 Score=41.36 Aligned_cols=249 Identities=14% Similarity=0.159 Sum_probs=138.4
Q ss_pred hHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhh----cCC----H
Q 015728 131 NCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFE----HGS----C 202 (401)
Q Consensus 131 ~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~----~~~----~ 202 (401)
..+.+.||+..|+.+|.+-... ..+.......+. +|...+.-..+.+.++ +.|+++.|+..|. .++ .
T Consensus 111 ~v~~~~gGL~~ll~~l~~~~~~---~~~~~ll~~llk-LL~~c~Kv~~NR~~Ll-~~~al~~LL~~L~~~l~~~~~~~~~ 185 (802)
T PF13764_consen 111 SVLAECGGLEVLLSRLDSIRDF---SRGRELLQVLLK-LLRYCCKVKVNRRALL-ELNALNRLLSVLNRALQANQNSSQA 185 (802)
T ss_pred HHhhcCCCHHHHHHHHHhhccc---cCcHHHHHHHHH-HHHHHHhhHHHHHHHH-HcCCHHHHHHHHHHHHhCccccccc
Confidence 3566799999999999764321 012445556666 7776665444444444 7999999998874 333 4
Q ss_pred HHHHHHHHHHHHHHhcccchhhhhhhhc---c------chHHHHHHHHHcc-----CCchhHHHHHHHHHHhcCCCch-h
Q 015728 203 SIKKRLCHLVEVIISSSHETKELCCKLG---K------DDRLLREIISLVH-----HNSEASDAGVRAFSALCSTETN-R 267 (401)
Q Consensus 203 ~~~~~aa~~L~~l~s~~~~~~~~~~~i~---~------~~g~i~~Lv~lL~-----~~~~~~~~a~~aL~~Ls~~~~n-~ 267 (401)
+.-+....++..|.+.... +....... . ...-+..|+..+. .+..+....+++|-+|+..... -
T Consensus 186 ~i~E~LL~IiE~ll~ea~~-~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m 264 (802)
T PF13764_consen 186 EIAEQLLEIIESLLSEANS-SSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKM 264 (802)
T ss_pred hHHHHHHHHHHHHHHHHhh-hhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHH
Confidence 5555555566555222110 01111000 0 1123556666552 2356888999999999965544 3
Q ss_pred HHHHhcCcHHHHHHHHHh--hccccchHHHHHHHHHHHHhC----CH---hhHHHHHhCCCcHHHHHHHHHhc-------
Q 015728 268 KTLVQEGAINGLIAYISN--ALTRERSLAAIAMARIEQLLA----IE---NSKDALINNPNGVYALVKMVFRV------- 331 (401)
Q Consensus 268 ~~iv~~G~v~~Lv~lL~~--~~~~~~~~~~~a~~~L~~La~----~~---~~~~~~~~~~g~i~~Lv~~l~~~------- 331 (401)
..+++. +.+.+++=.- .+..+. +..+..++.++. +. .-|..++ +.|.+...++-|.+.
T Consensus 265 ~~Lv~~--F~p~l~f~~~D~~~~~~~---~~~Le~F~~i~~~I~~~~~G~~LK~~Il-~~GIv~~a~~YL~~~~P~~~~~ 338 (802)
T PF13764_consen 265 DALVEH--FKPYLDFDKFDEEHSPDE---QFKLECFCEIAEGIPNNSNGNRLKDKIL-ESGIVQDAIDYLLKHFPSLKNT 338 (802)
T ss_pred HHHHHH--HHHhcChhhcccccCchH---HHHHHHHHHHHhcCCCCCchHHHHHHHH-HhhHHHHHHHHHHHhCcccccC
Confidence 333442 3333332221 001111 122444444443 22 3345665 889999888865432
Q ss_pred CChh--------HHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728 332 SDHE--------GSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS 392 (401)
Q Consensus 332 ~~~~--------~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~ 392 (401)
.+++ .-..+++.|..||.+....+ .++..+.++.+-.|=+..+....-..|-.+|..|.+
T Consensus 339 ~s~eWk~~l~~psLp~iL~lL~GLa~gh~~tQ-~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~ 406 (802)
T PF13764_consen 339 DSPEWKEFLSRPSLPYILRLLRGLARGHEPTQ-LLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAE 406 (802)
T ss_pred CCHHHHHHhcCCcHHHHHHHHHHHHhcCHHHH-HHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhc
Confidence 1112 34558899999998876554 557778884444443334345666677777777766
No 211
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=93.24 E-value=0.22 Score=29.52 Aligned_cols=30 Identities=27% Similarity=0.295 Sum_probs=26.0
Q ss_pred cHHHHHHHhhcCCCHHHHHHHHHHHHHHHHh
Q 015728 363 VLTQLLLLLQSQCSNRTKTKARMLLKLLRSK 393 (401)
Q Consensus 363 ~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~ 393 (401)
.+|.++++++++ ++++|..|+..|..+.++
T Consensus 1 llp~l~~~l~D~-~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDP-SPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-S-SHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCC-CHHHHHHHHHHHHHHHhh
Confidence 368899999888 999999999999999885
No 212
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=93.20 E-value=0.39 Score=41.77 Aligned_cols=81 Identities=12% Similarity=0.297 Sum_probs=64.9
Q ss_pred hHHHHhcCcHHHHHHHHHhhc------cccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHH
Q 015728 267 RKTLVQEGAINGLIAYISNAL------TRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENA 340 (401)
Q Consensus 267 ~~~iv~~G~v~~Lv~lL~~~~------~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a 340 (401)
...+++.||+..|+.+|.... ..+......++..|..|..+..|...++.+.++|..++.. +.+.+..++..+
T Consensus 100 v~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~-L~s~~~~~r~~~ 178 (187)
T PF06371_consen 100 VQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALS-LDSPNIKTRKLA 178 (187)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT---TTSHHHHHHH
T ss_pred HHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHH-HCCCCHHHHHHH
Confidence 567788999999999996421 1223567778999999999999999999899999999994 667778999999
Q ss_pred HHHHHHHh
Q 015728 341 INSLMMIC 348 (401)
Q Consensus 341 ~~~L~~l~ 348 (401)
+.+|..+|
T Consensus 179 leiL~~lc 186 (187)
T PF06371_consen 179 LEILAALC 186 (187)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999887
No 213
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=93.20 E-value=5 Score=39.04 Aligned_cols=246 Identities=12% Similarity=0.129 Sum_probs=129.1
Q ss_pred HHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhc
Q 015728 95 LSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLL 174 (401)
Q Consensus 95 ~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~ 174 (401)
+.-+.+-|. .+.+...|+.++-.|..-+.. +..|+.+...|.+..+++.+.+.... . +...++.+++..++
T Consensus 23 v~ylld~l~-~~~~~s~Rr~sll~La~K~~~-~~Fr~~~ra~g~~~~l~~~l~~~~~d------~-~~~l~~a~i~~~l~ 93 (361)
T PF07814_consen 23 VEYLLDGLE-SSSSSSVRRSSLLELASKCAD-PQFRRQFRAHGLVKRLFKALSDAPDD------D-ILALATAAILYVLS 93 (361)
T ss_pred HHHHHhhcc-cCCCccHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHhccccch------H-HHHHHHHHHHHHHc
Confidence 333333355 445667899999999998874 56999999999999999999544321 2 45555555888777
Q ss_pred CCchhhhhhcccCCchHHHHHHhhcCCH-HHHHHH-HHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc------c--
Q 015728 175 VGETESLNLLNEESKMESFIVLFEHGSC-SIKKRL-CHLVEVIISSSHETKELCCKLGKDDRLLREIISLV------H-- 244 (401)
Q Consensus 175 ~~~~~~~~~v~~~g~i~~Lv~~L~~~~~-~~~~~a-a~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL------~-- 244 (401)
.+.. ...++.+.+.+..++.++..... +..... ..-=.++ +. +.+ +.+..+..++ .
T Consensus 94 ~d~~-~~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~l-sk------~~~------~~~~~~~~~~~~~~~~~~~ 159 (361)
T PF07814_consen 94 RDGL-NMHLLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNL-SK------VQQ------KSRSLCKELLSSGSSWKSP 159 (361)
T ss_pred cCCc-chhhhhchhHHHHHHHHhccccccccccchhhhhhhhh-hH------HHH------HHHHHHHHHHhcccccccc
Confidence 5543 33344455666666777761100 000000 0000011 10 000 1111111111 0
Q ss_pred --CCchhHHHHHHHHHHhc--------------CC-CchhHHHHhcCcHHHHHHHHHhhc--------cc-----cchHH
Q 015728 245 --HNSEASDAGVRAFSALC--------------ST-ETNRKTLVQEGAINGLIAYISNAL--------TR-----ERSLA 294 (401)
Q Consensus 245 --~~~~~~~~a~~aL~~Ls--------------~~-~~n~~~iv~~G~v~~Lv~lL~~~~--------~~-----~~~~~ 294 (401)
....-+.-|+.+|-.++ .. +.=+..+.+.|++..+++++.+++ .. +-...
T Consensus 160 ~~~~lsp~~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l 239 (361)
T PF07814_consen 160 KPPELSPQTLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDL 239 (361)
T ss_pred CCcccccccHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHH
Confidence 01123444555555552 01 112666778899999999986210 00 11234
Q ss_pred HHHHHHHHHHhC-CHhhHHHHHhCC-CcHHHHHHHHHhcCC---hhHHHHHHHHHHHHhcCCHHHHHHHHHcCc
Q 015728 295 AIAMARIEQLLA-IENSKDALINNP-NGVYALVKMVFRVSD---HEGSENAINSLMMICCDSLQAREEAICAGV 363 (401)
Q Consensus 295 ~~a~~~L~~La~-~~~~~~~~~~~~-g~i~~Lv~~l~~~~~---~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~ 363 (401)
+.++.+|.+-.. +.++........ +..+.+...++.... ......+++++.|++.++++..+++...+.
T Consensus 240 ~~cl~ILEs~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l 313 (361)
T PF07814_consen 240 ERCLSILESVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKL 313 (361)
T ss_pred HHHHHHHHHHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHh
Confidence 567778887764 344554443232 233333332333221 223567999999999888654444444433
No 214
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=93.06 E-value=0.091 Score=49.25 Aligned_cols=61 Identities=16% Similarity=0.315 Sum_probs=47.2
Q ss_pred CCCcccccccccccCCceE-cCccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCCcHHHHHHHHHHH
Q 015728 9 IPHLFRCPISLDLFTDPVT-LCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLRHLINQWL 76 (401)
Q Consensus 9 ~~~~~~C~iC~~~~~~Pv~-~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~n~~l~~~i~~~~ 76 (401)
..+.+.||+|.+.+..|+. -.=||.-|..|-.+ ....||.|+.++.. ..+..+.+.++...
T Consensus 45 ~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~----~~~~CP~Cr~~~g~---~R~~amEkV~e~~~ 106 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTK----VSNKCPTCRLPIGN---IRCRAMEKVAEAVL 106 (299)
T ss_pred chhhccCchhhccCcccceecCCCcEehhhhhhh----hcccCCcccccccc---HHHHHHHHHHHhce
Confidence 3467899999999999985 35789999999753 34569999998873 35677777777654
No 215
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.02 E-value=0.1 Score=49.99 Aligned_cols=46 Identities=22% Similarity=0.415 Sum_probs=34.7
Q ss_pred CCcccccccccccCCce---EcCccccccHHhHHHHHHc----C---CCCCCCCcc
Q 015728 10 PHLFRCPISLDLFTDPV---TLCTGQTYDRSSIEKWLAA----G---NLTCPVTMQ 55 (401)
Q Consensus 10 ~~~~~C~iC~~~~~~Pv---~~~Cgh~fc~~Ci~~~~~~----~---~~~CP~c~~ 55 (401)
...|.|.||.+...-.+ .+||+|.||+.|+..|+.. + ...||.++.
T Consensus 182 ~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 182 NSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred hhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 34688999999776533 3799999999999999874 2 355777543
No 216
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.00 E-value=6.2 Score=39.90 Aligned_cols=261 Identities=14% Similarity=0.144 Sum_probs=143.7
Q ss_pred hHHHHHHHHHHHHHHhcCchhhh-HHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhc-CCchhhhhhcc-
Q 015728 109 LETKLQIVQKIHVVLRESPPASN-CLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLL-VGETESLNLLN- 185 (401)
Q Consensus 109 ~~~~~~a~~~L~~l~~~~~~~r~-~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~-~~~~~~~~~v~- 185 (401)
....+.++.-+-.+-++-..-+. .+-=.+.||.|-.-+....+ ..+...+. -+..|- ..+ .+.+.
T Consensus 138 d~~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~--------~tR~flv~-Wl~~Lds~P~---~~m~~y 205 (675)
T KOG0212|consen 138 DQNVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINP--------MTRQFLVS-WLYVLDSVPD---LEMISY 205 (675)
T ss_pred ccccccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCc--------hHHHHHHH-HHHHHhcCCc---HHHHhc
Confidence 34445555555555544332222 22223445555554443332 24443343 333222 222 22321
Q ss_pred cCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cCCchhHHHHHHHHHHhcCCC
Q 015728 186 EESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-HHNSEASDAGVRAFSALCSTE 264 (401)
Q Consensus 186 ~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~a~~aL~~Ls~~~ 264 (401)
-+..++-|..+|..++.++|..+-.+|.++...- .++....+....++.++.-+ ++++..+..|+.-|...-...
T Consensus 206 l~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI----~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~ 281 (675)
T KOG0212|consen 206 LPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEI----RSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIP 281 (675)
T ss_pred chHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH----hcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCC
Confidence 1345667778888888998866665555441110 11222223345678888877 455668888888888777655
Q ss_pred chhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHH---HHHHhCCHhhHHHHHhCCC-cHHHHHHHHHhcCChhHHHHH
Q 015728 265 TNRKTLVQEGAINGLIAYISNALTRERSLAAIAMAR---IEQLLAIENSKDALINNPN-GVYALVKMVFRVSDHEGSENA 340 (401)
Q Consensus 265 ~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~---L~~La~~~~~~~~~~~~~g-~i~~Lv~~l~~~~~~~~~~~a 340 (401)
.+.-..--+|++..++.++.+ +.....++.+..+ |..+...+.....+ +.| .|..|.+ .+.++....+-.+
T Consensus 282 g~~~l~~~s~il~~iLpc~s~--~e~~~i~~~a~~~n~~l~~l~s~~~~~~~i--d~~~ii~vl~~-~l~~~~~~tri~~ 356 (675)
T KOG0212|consen 282 GRDLLLYLSGILTAILPCLSD--TEEMSIKEYAQMVNGLLLKLVSSERLKEEI--DYGSIIEVLTK-YLSDDREETRIAV 356 (675)
T ss_pred CcchhhhhhhhhhhcccCCCC--CccccHHHHHHHHHHHHHHHHhhhhhcccc--chHHHHHHHHH-HhhcchHHHHHHH
Confidence 555555567888888888884 3333455554443 44555555555444 334 4555555 5666666677777
Q ss_pred HHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728 341 INSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS 392 (401)
Q Consensus 341 ~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~ 392 (401)
+.-+..|-...+... -......++.|+.-|.+. ++.+-..+..++.-++.
T Consensus 357 L~Wi~~l~~~~p~ql-~~h~~~if~tLL~tLsd~-sd~vvl~~L~lla~i~~ 406 (675)
T KOG0212|consen 357 LNWIILLYHKAPGQL-LVHNDSIFLTLLKTLSDR-SDEVVLLALSLLASICS 406 (675)
T ss_pred HHHHHHHHhhCcchh-hhhccHHHHHHHHhhcCc-hhHHHHHHHHHHHHHhc
Confidence 777766655433222 334556667777766555 67777777777666665
No 217
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=92.97 E-value=0.52 Score=36.46 Aligned_cols=91 Identities=10% Similarity=0.070 Sum_probs=56.5
Q ss_pred HHHHHHHHHhcCCCc-hhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHH
Q 015728 251 DAGVRAFSALCSTET-NRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVF 329 (401)
Q Consensus 251 ~~a~~aL~~Ls~~~~-n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~ 329 (401)
+-++.+|...+..-. ...... .-++|+++..+. +.+..++-.|+.+|.+++....+..... -......|.+ +.
T Consensus 4 ~ggli~Laa~ai~l~~~~~~~l-~~Il~pVL~~~~---D~d~rVRy~AcEaL~ni~k~~~~~~l~~-f~~IF~~L~k-l~ 77 (97)
T PF12755_consen 4 KGGLIGLAAVAIALGKDISKYL-DEILPPVLKCFD---DQDSRVRYYACEALYNISKVARGEILPY-FNEIFDALCK-LS 77 (97)
T ss_pred hHHHHHHHHHHHHchHhHHHHH-HHHHHHHHHHcC---CCcHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HH
Confidence 344555555553222 222222 348999999998 7899999999999999997544332211 2346667777 56
Q ss_pred hcCChhHHHHHHHHHHHHh
Q 015728 330 RVSDHEGSENAINSLMMIC 348 (401)
Q Consensus 330 ~~~~~~~~~~a~~~L~~l~ 348 (401)
.+.++.++. ++..|-.+-
T Consensus 78 ~D~d~~Vr~-~a~~Ld~ll 95 (97)
T PF12755_consen 78 ADPDENVRS-AAELLDRLL 95 (97)
T ss_pred cCCchhHHH-HHHHHHHHh
Confidence 667755444 556666654
No 218
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=92.93 E-value=4.5 Score=38.41 Aligned_cols=179 Identities=14% Similarity=0.112 Sum_probs=98.4
Q ss_pred cChHHHHHHHHHHHHHHhcCchhhhHHHh--cCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCC---chhhh
Q 015728 107 ATLETKLQIVQKIHVVLRESPPASNCLIQ--LGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVG---ETESL 181 (401)
Q Consensus 107 ~~~~~~~~a~~~L~~l~~~~~~~r~~i~~--~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~---~~~~~ 181 (401)
.+...|..++..|.++....... ..+.+ .-.+..+.+.++.+... -+..|+. ++..++.. .++..
T Consensus 55 K~~~~Re~aL~~l~~~l~~~~~~-d~v~~~~~tL~~~~~k~lkkg~~~--------E~~lA~~-~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 55 KSSSTREAALEALIRALSSRYLP-DFVEDRRETLLDALLKSLKKGKSE--------EQALAAR-ALALLALTLGAGEDSE 124 (309)
T ss_pred cCHHHHHHHHHHHHHHHHhcccH-HHHHHHHHHHHHHHHHHhccCCHH--------HHHHHHH-HHHHHhhhcCCCccHH
Confidence 45778999999999999776532 23322 34577777878776532 3444545 55555433 12333
Q ss_pred hhcccCCchHHHHHHhhcCC--HHHHHHHHHHHHHHHhccc--chhhhhhhhccchHHHH--HHHHHcc--CC-------
Q 015728 182 NLLNEESKMESFIVLFEHGS--CSIKKRLCHLVEVIISSSH--ETKELCCKLGKDDRLLR--EIISLVH--HN------- 246 (401)
Q Consensus 182 ~~v~~~g~i~~Lv~~L~~~~--~~~~~~aa~~L~~l~s~~~--~~~~~~~~i~~~~g~i~--~Lv~lL~--~~------- 246 (401)
.+. ....|.|...+..++ ...|..++.+|.-+ +... +.++....+ ..+. .....++ ++
T Consensus 125 ei~--~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~-~fv~~~d~~~~~~~~----~~le~if~~~~~~~~~~~~~~~~~ 197 (309)
T PF05004_consen 125 EIF--EELKPVLKRILTDSSASPKARAACLEALAIC-TFVGGSDEEETEELM----ESLESIFLLSILKSDGNAPVVAAE 197 (309)
T ss_pred HHH--HHHHHHHHHHHhCCccchHHHHHHHHHHHHH-HHhhcCChhHHHHHH----HHHHHHHHHHhcCcCCCcccccCC
Confidence 444 246788888887654 34555555555554 2221 011111111 1223 2222222 11
Q ss_pred --chhHHHHHHHHHHhc-CCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHh
Q 015728 247 --SEASDAGVRAFSALC-STETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLL 305 (401)
Q Consensus 247 --~~~~~~a~~aL~~Ls-~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La 305 (401)
..+.-+|+.+-.-|. ..+.....-.-...+|.|+.+|. +.+.+++..|-.+|+.|-
T Consensus 198 ~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~---s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 198 DDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLD---SDDVDVRIAAGEAIALLY 256 (309)
T ss_pred CccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHH
Confidence 235555655555444 33332222222347999999999 678889888877777664
No 219
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.91 E-value=0.072 Score=47.31 Aligned_cols=36 Identities=28% Similarity=0.497 Sum_probs=32.2
Q ss_pred CCCcccccccccccCCceEcCccccccHHhHHHHHH
Q 015728 9 IPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLA 44 (401)
Q Consensus 9 ~~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~ 44 (401)
+.+.-.|.+|++.+.+||..+-||.||+.||.+++-
T Consensus 40 iK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 40 IKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYIL 75 (303)
T ss_pred cCCcceeeeecccccCCccCCCCeeeeHHHHHHHHH
Confidence 445667899999999999999999999999999876
No 220
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=92.90 E-value=4.4 Score=40.14 Aligned_cols=129 Identities=12% Similarity=0.182 Sum_probs=91.8
Q ss_pred HHHHccCC-chhHHHHHHHHHHhcCCCc----hhHHHHhcCcHHHHHHHHHhhcc----ccchHHHHHHHHHHHHhCCHh
Q 015728 239 IISLVHHN-SEASDAGVRAFSALCSTET----NRKTLVQEGAINGLIAYISNALT----RERSLAAIAMARIEQLLAIEN 309 (401)
Q Consensus 239 Lv~lL~~~-~~~~~~a~~aL~~Ls~~~~----n~~~iv~~G~v~~Lv~lL~~~~~----~~~~~~~~a~~~L~~La~~~~ 309 (401)
+..++.+. .+-+-+|+-..-.++.+++ ||+.+.++=+.+.+=+||.+... ++.-.+..++.+|.-.|..+|
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 44455433 3345555555566776665 78889999999999999975311 122356788999999999987
Q ss_pred --hHHHHHhCCCcHHHHHHHHHhcCChh------HHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHh
Q 015728 310 --SKDALINNPNGVYALVKMVFRVSDHE------GSENAINSLMMICCDSLQAREEAICAGVLTQLLLLL 371 (401)
Q Consensus 310 --~~~~~~~~~g~i~~Lv~~l~~~~~~~------~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll 371 (401)
...+++ ..||.|.+.+.+..++. ..+.+-.+|-.++.+.+ -...++..|+++.+-++-
T Consensus 96 lAsh~~~v---~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~-G~~~Lia~G~~~~~~Q~y 161 (698)
T KOG2611|consen 96 LASHEEMV---SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEA-GLMTLIASGGLRVIAQMY 161 (698)
T ss_pred hccCHHHH---HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCc-hhHHHHhcCchHHHHHHH
Confidence 345665 46999999666555544 56668888888888844 455899999999998654
No 221
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=92.89 E-value=6.2 Score=41.78 Aligned_cols=103 Identities=13% Similarity=0.088 Sum_probs=58.2
Q ss_pred cHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHH
Q 015728 275 AINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQA 354 (401)
Q Consensus 275 ~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~ 354 (401)
+|+.+.+=|. ++++.++..|+.+|..|-. .++.+ -.++++.+ ++.+.++-+++.|+-++..+-..+.
T Consensus 93 avNti~kDl~---d~N~~iR~~AlR~ls~l~~-----~el~~--~~~~~ik~-~l~d~~ayVRk~Aalav~kly~ld~-- 159 (757)
T COG5096 93 AVNTIQKDLQ---DPNEEIRGFALRTLSLLRV-----KELLG--NIIDPIKK-LLTDPHAYVRKTAALAVAKLYRLDK-- 159 (757)
T ss_pred HHHHHHhhcc---CCCHHHHHHHHHHHHhcCh-----HHHHH--HHHHHHHH-HccCCcHHHHHHHHHHHHHHHhcCH--
Confidence 3455555555 5666666666666655421 11211 23445555 4555666667777777766665543
Q ss_pred HHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728 355 REEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS 392 (401)
Q Consensus 355 ~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~ 392 (401)
....+.|.+..+..++++. ++.+..+|...|..+..
T Consensus 160 -~l~~~~g~~~~l~~l~~D~-dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 160 -DLYHELGLIDILKELVADS-DPIVIANALASLAEIDP 195 (757)
T ss_pred -hhhhcccHHHHHHHHhhCC-CchHHHHHHHHHHHhch
Confidence 2345566666666666555 66666666666666544
No 222
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=92.88 E-value=0.035 Score=56.90 Aligned_cols=68 Identities=18% Similarity=0.412 Sum_probs=52.1
Q ss_pred CCcccccccccccCCceEcCccccccHHhHHHHHHc--CCCCCCCCcccCCCCCCCCcHHHHHHHHHHHH
Q 015728 10 PHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAA--GNLTCPVTMQTLHDPSIVPNHTLRHLINQWLQ 77 (401)
Q Consensus 10 ~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~--~~~~CP~c~~~~~~~~~~~n~~l~~~i~~~~~ 77 (401)
..++.||||...+++|+.+.|.|.||..|+...|.. +...||+|+.....+..+.......+++.+..
T Consensus 19 ~k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~~Es~r~sq~vqe~lk 88 (684)
T KOG4362|consen 19 QKILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSLRESPRFSQLSKESLK 88 (684)
T ss_pred hhhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhhccccchHHHHHHHhcC
Confidence 457899999999999999999999999999876653 35779999977766555545555566665443
No 223
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=92.87 E-value=0.046 Score=57.06 Aligned_cols=46 Identities=17% Similarity=0.374 Sum_probs=38.2
Q ss_pred ccccccccccCCceEcCccccccHHhHHHHHHcCC-CCCCCCcccCCC
Q 015728 13 FRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGN-LTCPVTMQTLHD 59 (401)
Q Consensus 13 ~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~-~~CP~c~~~~~~ 59 (401)
+.|++|.+ ...++.+.|||.||..|+...+.... ..||.|+..+..
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence 78999999 78888899999999999999887533 459999876543
No 224
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=92.76 E-value=11 Score=40.57 Aligned_cols=244 Identities=15% Similarity=0.189 Sum_probs=135.5
Q ss_pred hhhhhcChHHHHHHHHHHHHHHhcCchhhhHHH--hcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcC--Cc
Q 015728 102 LQSHEATLETKLQIVQKIHVVLRESPPASNCLI--QLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLV--GE 177 (401)
Q Consensus 102 l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~--~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~--~~ 177 (401)
|..-+++...+..++..|..+.-.++.- .|. ..-..|+++.....+. .++-.+|+. +...+.. ..
T Consensus 485 l~DkSsss~~ki~~L~fl~~~L~s~~p~--~fhp~~~~Ls~~v~~aV~d~f--------yKisaEAL~-v~~~lvkvirp 553 (1233)
T KOG1824|consen 485 LNDKSSSSNLKIDALVFLYSALISHPPE--VFHPHLSALSPPVVAAVGDPF--------YKISAEALL-VCQQLVKVIRP 553 (1233)
T ss_pred cCCccchHHHHHHHHHHHHHHHhcCChh--hcccchhhhhhHHHHHhcCch--------HhhhHHHHH-HHHHHHHHhcc
Confidence 3444567788889999888877665421 111 1223444444443333 345555555 4433320 00
Q ss_pred --h----hhhhhcccCCchHHHHHHhhc--CCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc--c-CC
Q 015728 178 --T----ESLNLLNEESKMESFIVLFEH--GSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV--H-HN 246 (401)
Q Consensus 178 --~----~~~~~v~~~g~i~~Lv~~L~~--~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL--~-~~ 246 (401)
. +....+ ...+...++.|.. .+.++|+.|...+..+++... ...+ .-+|..+.+| + ++
T Consensus 554 l~~~~~~d~~~~v--~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fg------D~l~---~eL~~~L~il~eRl~n 622 (1233)
T KOG1824|consen 554 LQPPSSFDASPYV--KTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFG------DFLG---NELPRTLPILLERLGN 622 (1233)
T ss_pred cCCCccCCCChhH--HHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHh------hhhh---hhhHHHHHHHHHHHhc
Confidence 0 000001 0113333455544 366899999999988866443 2221 1234433333 2 34
Q ss_pred chhHHHHHHHHHHhcCCCchhHHH-HhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhH--HHHHhCCCcHHH
Q 015728 247 SEASDAGVRAFSALCSTETNRKTL-VQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSK--DALINNPNGVYA 323 (401)
Q Consensus 247 ~~~~~~a~~aL~~Ls~~~~n~~~i-v~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~--~~~~~~~g~i~~ 323 (401)
...+..|++|+.-++..+-..... +=..+++.|...++ ...+..+...+.++..|..+.... .... .-++..
T Consensus 623 EiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flr---K~~r~lr~~~l~a~~~L~~~~~~~~~~~~~--e~vL~e 697 (1233)
T KOG1824|consen 623 EITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLR---KNQRALRLATLTALDKLVKNYSDSIPAELL--EAVLVE 697 (1233)
T ss_pred hhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhccccHHHH--HHHHHH
Confidence 457889999999988655433322 22347888999888 344555666666666665432111 1111 012222
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcC
Q 015728 324 LVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQ 374 (401)
Q Consensus 324 Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~ 374 (401)
+-. +...++...++.|+..|..+....+.+ ...+..-.++.++.+++++
T Consensus 698 l~~-Lisesdlhvt~~a~~~L~tl~~~~ps~-l~~~~~~iL~~ii~ll~Sp 746 (1233)
T KOG1824|consen 698 LPP-LISESDLHVTQLAVAFLTTLAIIQPSS-LLKISNPILDEIIRLLRSP 746 (1233)
T ss_pred hhh-hhhHHHHHHHHHHHHHHHHHHhcccHH-HHHHhhhhHHHHHHHhhCc
Confidence 333 234466778999999999988875543 3666777888999999887
No 225
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=92.73 E-value=4.1 Score=38.42 Aligned_cols=157 Identities=11% Similarity=0.122 Sum_probs=100.5
Q ss_pred cChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhc--
Q 015728 107 ATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLL-- 184 (401)
Q Consensus 107 ~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v-- 184 (401)
.+...|..|+.+|.-.+--+....... ++.+...+..++ ..++..|+.++.-.+..+.......-
T Consensus 39 ~~~~vR~~al~cLGl~~Lld~~~a~~~-----l~l~~~~~~~~~--------~~v~~~al~~l~Dll~~~g~~~~~~~~~ 105 (298)
T PF12719_consen 39 SDPAVRELALKCLGLCCLLDKELAKEH-----LPLFLQALQKDD--------EEVKITALKALFDLLLTHGIDIFDSESD 105 (298)
T ss_pred CCHHHHHHHHHHHHHHHHhChHHHHHH-----HHHHHHHHHhCC--------HHHHHHHHHHHHHHHHHcCchhccchhc
Confidence 457899999999999998877433222 777888885544 45888888844444443332221111
Q ss_pred -----ccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cC----CchhHHHHH
Q 015728 185 -----NEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-HH----NSEASDAGV 254 (401)
Q Consensus 185 -----~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~----~~~~~~~a~ 254 (401)
.....+..+...|++.+++++..|+.-+.+| -.. ..+.....++..|+-+. +. +...++.-.
T Consensus 106 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KL-lL~-------~~i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~ 177 (298)
T PF12719_consen 106 NDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKL-LLS-------GRISDPPKVLSRLLLLYFNPSTEDNQRLRQCLS 177 (298)
T ss_pred cCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHH-Hhc-------CCCCcHHHHHHHHHHHHcCcccCCcHHHHHHHH
Confidence 1123566677888888999999999999998 322 22322135666666655 32 234555555
Q ss_pred HHHHHhcCCCchhHHHHhcCcHHHHHHHHH
Q 015728 255 RAFSALCSTETNRKTLVQEGAINGLIAYIS 284 (401)
Q Consensus 255 ~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~ 284 (401)
..+-..+..+......+..+.+|.+-.+..
T Consensus 178 ~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~ 207 (298)
T PF12719_consen 178 VFFPVYASSSPENQERLAEAFLPTLRTLSN 207 (298)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHh
Confidence 555567766655556677778888888876
No 226
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.69 E-value=0.13 Score=46.01 Aligned_cols=49 Identities=14% Similarity=0.316 Sum_probs=39.2
Q ss_pred CCcccccccccccCCceE----cCccccccHHhHHHHHHcCCCCCCCCcccCCCCC
Q 015728 10 PHLFRCPISLDLFTDPVT----LCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPS 61 (401)
Q Consensus 10 ~~~~~C~iC~~~~~~Pv~----~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~ 61 (401)
...|.|||..-.|..-.. .+|||.|-.+.+.+.- ...|++|+..+...+
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik---as~C~~C~a~y~~~d 161 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK---ASVCHVCGAAYQEDD 161 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhh---hccccccCCcccccC
Confidence 457999999988877554 4899999988887653 567999999987764
No 227
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=92.51 E-value=7 Score=39.46 Aligned_cols=164 Identities=17% Similarity=0.185 Sum_probs=107.4
Q ss_pred hHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CC----chhHHHHHHHHHHhcCCC
Q 015728 190 MESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HN----SEASDAGVRAFSALCSTE 264 (401)
Q Consensus 190 i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~----~~~~~~a~~aL~~Ls~~~ 264 (401)
...+.+++.+|+...|..|...|..+ |.+. .....+....| +..|..++. ++ .+.....++++..|-...
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sl-s~d~---~fa~efi~~~g-l~~L~~liedg~~~~~~~~L~~~L~af~elmehg 159 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSL-SLDP---TFAEEFIRCSG-LELLFSLIEDGRVCMSSELLSTSLRAFSELMEHG 159 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhc-cccH---HHHHHHHhcch-HHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhc
Confidence 45667888999998888888888888 7765 55555555435 689999983 32 246666666666655433
Q ss_pred chhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHH
Q 015728 265 TNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSL 344 (401)
Q Consensus 265 ~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L 344 (401)
-.-+..+...+|-..+.+.. ...-+..+-..|+..|..+..+.....+.+.++--+..|+.. +..++...+..|+..+
T Consensus 160 vvsW~~~~~~fV~~~a~~V~-~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~h-lq~~n~~i~~~aial~ 237 (713)
T KOG2999|consen 160 VVSWESVSNDFVVSMASYVN-AKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRH-LQVSNQRIQTCAIALL 237 (713)
T ss_pred eeeeeecccHHHHHHHHHHh-hhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHH-HHhcchHHHHHHHHHH
Confidence 33334444444545555543 112344677889999999998777555555588889999995 5666667888888888
Q ss_pred HHHhcC-CHHHHHHHHH
Q 015728 345 MMICCD-SLQAREEAIC 360 (401)
Q Consensus 345 ~~l~~~-~~~~~~~~~~ 360 (401)
-.+... ++.-|.++.+
T Consensus 238 nal~~~a~~~~R~~~~~ 254 (713)
T KOG2999|consen 238 NALFRKAPDDKRFEMAK 254 (713)
T ss_pred HHHHhhCChHHHHHHHH
Confidence 776543 2234444444
No 228
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.46 E-value=16 Score=38.53 Aligned_cols=225 Identities=12% Similarity=0.129 Sum_probs=119.9
Q ss_pred HhhhhhhcChHHHHHHHHHHHHHHhcCchhh--------hHHHh--cC----ChHHHHHHhccCCcccchhhhHHHHHHH
Q 015728 100 HSLQSHEATLETKLQIVQKIHVVLRESPPAS--------NCLIQ--LG----FLPLLLKQLFGKAESKFSQVYVQFVEES 165 (401)
Q Consensus 100 ~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r--------~~i~~--~G----~i~~Lv~lL~s~~~~~~~~~~~~~~~~a 165 (401)
+++.. .++-.++.|+.+..++-+..|.-- ..+-+ .| ++-.+..+.+-..+.. ....++...-
T Consensus 149 ~Ll~~--~~~~irKKA~Lca~r~irK~P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l--~~fr~l~~~l 224 (866)
T KOG1062|consen 149 RLLQH--RDPYIRKKAALCAVRFIRKVPDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDAL--SYFRDLVPSL 224 (866)
T ss_pred HHHhC--CCHHHHHHHHHHHHHHHHcCchHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHH--HHHHHHHHHH
Confidence 44443 467889999999999988877543 33332 22 2333333333221110 0012233333
Q ss_pred HHHHHHhhcCCchhhhhhcccCC----c----hHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHH-
Q 015728 166 LSCVQKLLLVGETESLNLLNEES----K----MESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLL- 236 (401)
Q Consensus 166 ~~~~L~~l~~~~~~~~~~v~~~g----~----i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i- 236 (401)
+. +|.++....-. .+.= -+| . |-.++++|-.++.+..+....+|..+ +... |.++. ++. .++
T Consensus 225 V~-iLk~l~~~~ys-peyd-v~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqv-atnt--dsskN-~Gn--AILY 295 (866)
T KOG1062|consen 225 VK-ILKQLTNSGYS-PEYD-VHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQV-ATNT--DSSKN-AGN--AILY 295 (866)
T ss_pred HH-HHHHHhcCCCC-CccC-ccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH-Hhcc--ccccc-chh--HHHH
Confidence 44 66665532210 0000 011 1 22345556677777777777788777 5433 13332 222 122
Q ss_pred HHHHHHc--cCCchhHHHHHHHHHHhcCCCc-hhHHH--------H--hcCcH----HHHHHHHHhhccccchHHHHHHH
Q 015728 237 REIISLV--HHNSEASDAGVRAFSALCSTET-NRKTL--------V--QEGAI----NGLIAYISNALTRERSLAAIAMA 299 (401)
Q Consensus 237 ~~Lv~lL--~~~~~~~~~a~~aL~~Ls~~~~-n~~~i--------v--~~G~v----~~Lv~lL~~~~~~~~~~~~~a~~ 299 (401)
+....++ ..+..++..|+.+|...-.+++ |.+.+ + +..+| ..+++.|+ +.|..++..|+.
T Consensus 296 E~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~---DpD~SIkrralE 372 (866)
T KOG1062|consen 296 ECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLK---DPDVSIKRRALE 372 (866)
T ss_pred HHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhc---CCcHHHHHHHHH
Confidence 3333333 4667789999999988665444 33221 1 22233 34777788 788889999999
Q ss_pred HHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHh
Q 015728 300 RIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMIC 348 (401)
Q Consensus 300 ~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~ 348 (401)
.+..|....+-+.. +..|++- +...++..+...+.-+..++
T Consensus 373 Ls~~lvn~~Nv~~m-------v~eLl~f-L~~~d~~~k~~~as~I~~la 413 (866)
T KOG1062|consen 373 LSYALVNESNVRVM-------VKELLEF-LESSDEDFKADIASKIAELA 413 (866)
T ss_pred HHHHHhccccHHHH-------HHHHHHH-HHhccHHHHHHHHHHHHHHH
Confidence 88888643333322 2346663 34446667776666665554
No 229
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.41 E-value=0.058 Score=51.06 Aligned_cols=43 Identities=14% Similarity=0.295 Sum_probs=35.1
Q ss_pred cccccccccccC-Cce---EcCccccccHHhHHHHHHc-CCCCCCCCc
Q 015728 12 LFRCPISLDLFT-DPV---TLCTGQTYDRSSIEKWLAA-GNLTCPVTM 54 (401)
Q Consensus 12 ~~~C~iC~~~~~-~Pv---~~~Cgh~fc~~Ci~~~~~~-~~~~CP~c~ 54 (401)
.+.|..|++.+- +|- .+||.|.|..+|+++++.+ +..+||.|+
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Cr 412 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCR 412 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHH
Confidence 578999999652 332 2799999999999999875 568899998
No 230
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=92.37 E-value=0.55 Score=37.59 Aligned_cols=71 Identities=23% Similarity=0.230 Sum_probs=56.7
Q ss_pred hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHh
Q 015728 93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKL 172 (401)
Q Consensus 93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~ 172 (401)
+.+..|.++|..+. ++....-|..-|..+++..|..|..+.+.|+=..+..++.+++ ++++.+|+.|+-..
T Consensus 43 ~llk~L~~lL~~s~-d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d--------~eVr~eAL~avQkl 113 (119)
T PF11698_consen 43 ELLKKLIKLLDKSD-DPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHED--------PEVRYEALLAVQKL 113 (119)
T ss_dssp HHHHHHHHHH-SHH-HHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SS--------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCC-CcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCC--------HHHHHHHHHHHHHH
Confidence 78888888885554 4667777999999999999999999988999999999998876 56999999954443
No 231
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=92.36 E-value=0.9 Score=35.11 Aligned_cols=67 Identities=21% Similarity=0.224 Sum_probs=51.1
Q ss_pred CcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHH--HcCcHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 015728 319 NGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAI--CAGVLTQLLLLLQSQCSNRTKTKARMLLKLL 390 (401)
Q Consensus 319 g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l 390 (401)
..+++++. .+.+.+.+++.+|..+|.++++.. +.+++ -...+..|..++.+. ++.+|..|.-+-++|
T Consensus 27 ~Il~pVL~-~~~D~d~rVRy~AcEaL~ni~k~~---~~~~l~~f~~IF~~L~kl~~D~-d~~Vr~~a~~Ld~ll 95 (97)
T PF12755_consen 27 EILPPVLK-CFDDQDSRVRYYACEALYNISKVA---RGEILPYFNEIFDALCKLSADP-DENVRSAAELLDRLL 95 (97)
T ss_pred HHHHHHHH-HcCCCcHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHcCC-chhHHHHHHHHHHHh
Confidence 45778888 678889999999999999998753 33443 456778888888666 888888886666555
No 232
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=92.24 E-value=0.3 Score=49.35 Aligned_cols=78 Identities=31% Similarity=0.458 Sum_probs=66.7
Q ss_pred cCCCCCCcccccccccccCCceEcC-ccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCCcHHHHHHHHHHHHhCCCCC
Q 015728 5 RQMTIPHLFRCPISLDLFTDPVTLC-TGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLRHLINQWLQMGGGQH 83 (401)
Q Consensus 5 ~~~~~~~~~~C~iC~~~~~~Pv~~~-Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~n~~l~~~i~~~~~~~~~~~ 83 (401)
...++|++|.-|+...+|+|||.+| .+-+..++-|..++-. ..+-|-=|.+++..++.||..++..|..|.+..|.++
T Consensus 847 D~GDvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahlls-d~tDPFNRmPLtlddVtpn~eLrekIn~f~k~k~~KH 925 (929)
T COG5113 847 DMGDVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLS-DGTDPFNRMPLTLDDVTPNAELREKINRFYKCKGQKH 925 (929)
T ss_pred hccCCchhhhCchhhhcccCCeecccccccccHHHHHHHHhc-CCCCccccCCCchhhcCCCHHHHHHHHHHHhcccccc
Confidence 3456999999999999999999987 7789999998888774 4467888888888899999999999999988777654
No 233
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=92.09 E-value=3.2 Score=40.62 Aligned_cols=126 Identities=13% Similarity=0.180 Sum_probs=84.1
Q ss_pred cCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhh-cC---CHHHHHHHHHH
Q 015728 136 LGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFE-HG---SCSIKKRLCHL 211 (401)
Q Consensus 136 ~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~-~~---~~~~~~~aa~~ 211 (401)
......|...++..... ++.+.-.|+. ++..+..+++-.-.++.++|.++.+++.+. .+ +.++....-.+
T Consensus 105 s~L~~sL~~Il~n~~~F-----G~~v~s~a~~-ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~ 178 (379)
T PF06025_consen 105 SSLLSSLKHILENPEVF-----GPSVFSLAIN-IVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNV 178 (379)
T ss_pred hhHHHHHHHHHhCcccc-----chHHHHHHHH-HHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHH
Confidence 44555666666654432 3557788888 888887777777778889999999999887 54 44555555567
Q ss_pred HHHHHhcccchhhhhhhhccchHHHHHHHHHc-cCCc-------hhHHHHHHHHHHhcCCCc-hhHHHHh
Q 015728 212 VEVIISSSHETKELCCKLGKDDRLLREIISLV-HHNS-------EASDAGVRAFSALCSTET-NRKTLVQ 272 (401)
Q Consensus 212 L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~-------~~~~~a~~aL~~Ls~~~~-n~~~iv~ 272 (401)
|..| +.+. ...+.+.+. ++++.+++++ +.+. +....-...+-.|.+++. -|..+++
T Consensus 179 l~Ai-cLN~---~Gl~~~~~~-~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~ 243 (379)
T PF06025_consen 179 LSAI-CLNN---RGLEKVKSS-NPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIID 243 (379)
T ss_pred HhHH-hcCH---HHHHHHHhc-ChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence 7777 7765 667777665 8999999988 3321 233334445666776544 4555544
No 234
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=91.88 E-value=0.7 Score=41.56 Aligned_cols=83 Identities=20% Similarity=0.209 Sum_probs=64.3
Q ss_pred chHHHHHHHHHHHHhCCHhhHHHHHhCCC-------cHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHH-HHHHHHHcC
Q 015728 291 RSLAAIAMARIEQLLAIENSKDALINNPN-------GVYALVKMVFRVSDHEGSENAINSLMMICCDSLQ-AREEAICAG 362 (401)
Q Consensus 291 ~~~~~~a~~~L~~La~~~~~~~~~~~~~g-------~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~g 362 (401)
-.-+..|+.+|+-|+..+.|-..+. ..+ .+..|++.+-...++-.+|.|+..|.+||..+.. ++....+.+
T Consensus 138 lSPqrlaLEaLcKLsV~e~NVDliL-aTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~ 216 (257)
T PF12031_consen 138 LSPQRLALEALCKLSVIENNVDLIL-ATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKP 216 (257)
T ss_pred CCHHHHHHHHHHHhheeccCcceee-eCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhc
Confidence 3568889999999998777776665 333 3555666444456778999999999999998764 556777999
Q ss_pred cHHHHHHHhhcC
Q 015728 363 VLTQLLLLLQSQ 374 (401)
Q Consensus 363 ~v~~L~~ll~~~ 374 (401)
.|..|+.+++..
T Consensus 217 ~i~~Li~FiE~a 228 (257)
T PF12031_consen 217 CISHLIAFIEDA 228 (257)
T ss_pred hHHHHHHHHHHH
Confidence 999999999776
No 235
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=91.85 E-value=8.7 Score=35.23 Aligned_cols=146 Identities=8% Similarity=0.043 Sum_probs=95.2
Q ss_pred CHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-------cCC---c---hhHHHHHHHHHHhcCCCchh
Q 015728 201 SCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-------HHN---S---EASDAGVRAFSALCSTETNR 267 (401)
Q Consensus 201 ~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-------~~~---~---~~~~~a~~aL~~Ls~~~~n~ 267 (401)
+++.|+.|..-|..- . +..++....+-.+.|.+..|+.=+ +.. . .-.-+|+..|--++++++.|
T Consensus 8 ~~~~Re~Al~eLsk~-r--~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr 84 (262)
T PF04078_consen 8 NPETRENALLELSKK-R--ESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETR 84 (262)
T ss_dssp SHHHHHHHHHHHHHT-C--CC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTH
T ss_pred CcchHHHHHHHHHHh-h--hcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHH
Confidence 566777665555433 1 112355666666667777665422 111 1 24556666777788999999
Q ss_pred HHHHhcCcHHHHHHHHHhhc--cccchHHHHHHHHHHHHhCCHh-hHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHH
Q 015728 268 KTLVQEGAINGLIAYISNAL--TRERSLAAIAMARIEQLLAIEN-SKDALINNPNGVYALVKMVFRVSDHEGSENAINSL 344 (401)
Q Consensus 268 ~~iv~~G~v~~Lv~lL~~~~--~~~~~~~~~a~~~L~~La~~~~-~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L 344 (401)
..++++...-.|-.+|.... .+-+.++-.+++++..|.+.++ .-..+..+.+.||..++ ++..|++..+-.|..++
T Consensus 85 ~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr-~me~GselSKtvAtfIl 163 (262)
T PF04078_consen 85 MPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLR-IMEFGSELSKTVATFIL 163 (262)
T ss_dssp HHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHH-HHHHS-HHHHHHHHHHH
T ss_pred HHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHH-HHHhccHHHHHHHHHHH
Confidence 99999998888888886420 1124577789999999997433 23344458899999999 56778878888899888
Q ss_pred HHHhcC
Q 015728 345 MMICCD 350 (401)
Q Consensus 345 ~~l~~~ 350 (401)
..|-.+
T Consensus 164 qKIL~d 169 (262)
T PF04078_consen 164 QKILLD 169 (262)
T ss_dssp HHHHHS
T ss_pred HHHHcc
Confidence 776544
No 236
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.70 E-value=1.5 Score=44.87 Aligned_cols=144 Identities=8% Similarity=0.084 Sum_probs=98.1
Q ss_pred cCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHccCCc-hhHHHHHHHHHHhcCCC
Q 015728 186 EESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHHNS-EASDAGVRAFSALCSTE 264 (401)
Q Consensus 186 ~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~-~~~~~a~~aL~~Ls~~~ 264 (401)
..|+=..+|.=|...-.++|.+|+..++.| +... .... ..++..|++++.+.. .++..|..+|..++.+
T Consensus 371 ~sGACGA~VhGlEDEf~EVR~AAV~Sl~~L-a~ss------P~FA--~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~- 440 (823)
T KOG2259|consen 371 PSGACGALVHGLEDEFYEVRRAAVASLCSL-ATSS------PGFA--VRALDFLVDMFNDEIEVVRLKAIFALTMISVH- 440 (823)
T ss_pred cccccceeeeechHHHHHHHHHHHHHHHHH-HcCC------CCcH--HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH-
Confidence 567777788777777789999999999999 6543 2222 257899999996654 5999999999998865
Q ss_pred chhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHH
Q 015728 265 TNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSL 344 (401)
Q Consensus 265 ~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L 344 (401)
..++..-++.+.+-|. +.++++++.....|.+.-..+-+...++ |..|++-+.+. |.-+..-.+++
T Consensus 441 ----l~i~eeql~~il~~L~---D~s~dvRe~l~elL~~~~~~d~~~i~m~-----v~~lL~~L~ky--PqDrd~i~~cm 506 (823)
T KOG2259|consen 441 ----LAIREEQLRQILESLE---DRSVDVREALRELLKNARVSDLECIDMC-----VAHLLKNLGKY--PQDRDEILRCM 506 (823)
T ss_pred ----heecHHHHHHHHHHHH---hcCHHHHHHHHHHHHhcCCCcHHHHHHH-----HHHHHHHhhhC--CCCcHHHHHHH
Confidence 3345567888999999 6788888888877775544333333332 33333322222 23444566777
Q ss_pred HHHhcCCHH
Q 015728 345 MMICCDSLQ 353 (401)
Q Consensus 345 ~~l~~~~~~ 353 (401)
..+.++.+.
T Consensus 507 ~~iGqnH~~ 515 (823)
T KOG2259|consen 507 GRIGQNHRR 515 (823)
T ss_pred HHHhccChh
Confidence 777766543
No 237
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=91.70 E-value=4.6 Score=40.69 Aligned_cols=158 Identities=16% Similarity=0.153 Sum_probs=108.2
Q ss_pred HHHHHc-cCCchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhcc-ccchHHHHHHHHHHHHhCCHhhHHHHH
Q 015728 238 EIISLV-HHNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALT-RERSLAAIAMARIEQLLAIENSKDALI 315 (401)
Q Consensus 238 ~Lv~lL-~~~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~-~~~~~~~~a~~~L~~La~~~~~~~~~~ 315 (401)
.+..++ +++...+..|..-|..++.++.-...++...++..|..++.+... .+.++....+.++..|-.++---...+
T Consensus 87 ~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~~~ 166 (713)
T KOG2999|consen 87 RIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWESV 166 (713)
T ss_pred HHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeeeec
Confidence 445555 566666777888899999999999999999999999999984200 123455555666655554433222222
Q ss_pred hCCCcHHHHHHHHH-hcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhh
Q 015728 316 NNPNGVYALVKMVF-RVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKW 394 (401)
Q Consensus 316 ~~~g~i~~Lv~~l~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~ 394 (401)
...+|...+..+. +--+..+-..|+..|-++.-.+...+..+.++--+..|+..++.+ +....-.|.+++..+-...
T Consensus 167 -~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~-n~~i~~~aial~nal~~~a 244 (713)
T KOG2999|consen 167 -SNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVS-NQRIQTCAIALLNALFRKA 244 (713)
T ss_pred -ccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhc-chHHHHHHHHHHHHHHhhC
Confidence 2233444444221 112335677899999999888777888888999999999999988 6666666999998877767
Q ss_pred HHh
Q 015728 395 AEE 397 (401)
Q Consensus 395 ~e~ 397 (401)
|++
T Consensus 245 ~~~ 247 (713)
T KOG2999|consen 245 PDD 247 (713)
T ss_pred ChH
Confidence 765
No 238
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.61 E-value=0.16 Score=53.00 Aligned_cols=41 Identities=17% Similarity=0.458 Sum_probs=35.3
Q ss_pred CcccccccccccCCceE-cCccccccHHhHHHHHHcCCCCCCCCcc
Q 015728 11 HLFRCPISLDLFTDPVT-LCTGQTYDRSSIEKWLAAGNLTCPVTMQ 55 (401)
Q Consensus 11 ~~~~C~iC~~~~~~Pv~-~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~ 55 (401)
+.-+|..|...+.-|+. ..|||.|..+|++ .+...||.|..
T Consensus 839 q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e----~~~~~CP~C~~ 880 (933)
T KOG2114|consen 839 QVSKCSACEGTLDLPFVHFLCGHSYHQHCLE----DKEDKCPKCLP 880 (933)
T ss_pred eeeeecccCCccccceeeeecccHHHHHhhc----cCcccCCccch
Confidence 44689999999999987 5899999999998 36678999965
No 239
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=91.55 E-value=23 Score=38.20 Aligned_cols=246 Identities=15% Similarity=0.177 Sum_probs=133.0
Q ss_pred hhHHHHHHhhhhhh--cChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHH
Q 015728 93 DSLSTLKHSLQSHE--ATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQ 170 (401)
Q Consensus 93 ~~~~~l~~~l~~~~--~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L 170 (401)
.++..+...|.+.. +........+-.|-..|-.-+.||+.+.+.|+++.|+..|..-..........++-+..+. ++
T Consensus 117 gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~-Ii 195 (802)
T PF13764_consen 117 GGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLE-II 195 (802)
T ss_pred CCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHH-HH
Confidence 45555555554322 2334455555555565666688999999999999999998521110000011345566665 55
Q ss_pred HhhcCCchhh-h----hhcc-------cCCchHHHHHHhhcC----CHHHHHHHHHHHHHHHhcccchhhhhhhhccchH
Q 015728 171 KLLLVGETES-L----NLLN-------EESKMESFIVLFEHG----SCSIKKRLCHLVEVIISSSHETKELCCKLGKDDR 234 (401)
Q Consensus 171 ~~l~~~~~~~-~----~~v~-------~~g~i~~Lv~~L~~~----~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g 234 (401)
..+....... . .... ....|..|++.+.+. +..+....+++|-.| +..+. +.-..
T Consensus 196 E~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~L-t~G~~--e~m~~------ 266 (802)
T PF13764_consen 196 ESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFL-TYGNE--EKMDA------ 266 (802)
T ss_pred HHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHH-hcCCH--HHHHH------
Confidence 5444221110 1 0010 111266667766543 567778888899888 65441 22222
Q ss_pred HHHHHHHHc--cC-C---chhHHHHHHHHHHhcC-C---C---chhHHHHhcCcHHHHHHHHHhhcc-----ccch----
Q 015728 235 LLREIISLV--HH-N---SEASDAGVRAFSALCS-T---E---TNRKTLVQEGAINGLIAYISNALT-----RERS---- 292 (401)
Q Consensus 235 ~i~~Lv~lL--~~-~---~~~~~~a~~aL~~Ls~-~---~---~n~~~iv~~G~v~~Lv~lL~~~~~-----~~~~---- 292 (401)
++..+-..+ +. + .+--+.-+..+..++. - . .-|..+++.|++...++.|..+-. .+++
T Consensus 267 Lv~~F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~ 346 (802)
T PF13764_consen 267 LVEHFKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEF 346 (802)
T ss_pred HHHHHHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHH
Confidence 222223333 11 1 1111233556666652 1 1 138889999999999999864311 2222
Q ss_pred ----HHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcC-ChhHHHHHHHHHHHHhcC
Q 015728 293 ----LAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVS-DHEGSENAINSLMMICCD 350 (401)
Q Consensus 293 ----~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~-~~~~~~~a~~~L~~l~~~ 350 (401)
....++..|.-||.+...-+.++ ..++++.+-+ |-..+ +..+-..|=.+|-.|+.+
T Consensus 347 l~~psLp~iL~lL~GLa~gh~~tQ~~~-~~~~l~~lH~-LEqvss~~~IGslAEnlLeal~~~ 407 (802)
T PF13764_consen 347 LSRPSLPYILRLLRGLARGHEPTQLLI-AEQLLPLLHR-LEQVSSEEHIGSLAENLLEALAEN 407 (802)
T ss_pred hcCCcHHHHHHHHHHHHhcCHHHHHHH-HhhHHHHHHH-hhcCCCccchHHHHHHHHHHHhcC
Confidence 34457888888887665444444 4567755544 55544 334444555666666654
No 240
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=91.55 E-value=0.52 Score=42.37 Aligned_cols=79 Identities=11% Similarity=0.191 Sum_probs=60.8
Q ss_pred hhHHHHHHHHHHhcCCCchhHHHHhcC-------cHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhH-HHHHhCCC
Q 015728 248 EASDAGVRAFSALCSTETNRKTLVQEG-------AINGLIAYISNALTRERSLAAIAMARIEQLLAIENSK-DALINNPN 319 (401)
Q Consensus 248 ~~~~~a~~aL~~Ls~~~~n~~~iv~~G-------~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~-~~~~~~~g 319 (401)
.-++.|+.+|..||..+.|..-+..-+ .+..|+++|.. .++.-.+|-|+..|.+|+..++.- ..+..+.+
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~--~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~ 216 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGM--REDQVCREFAVVLLSNLAQGDEAAARAIAMQKP 216 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhcccHHHHHHHHHhhc
Confidence 368999999999999999887776544 44455555553 566778999999999999876544 35666889
Q ss_pred cHHHHHHHH
Q 015728 320 GVYALVKMV 328 (401)
Q Consensus 320 ~i~~Lv~~l 328 (401)
+|..|+..|
T Consensus 217 ~i~~Li~Fi 225 (257)
T PF12031_consen 217 CISHLIAFI 225 (257)
T ss_pred hHHHHHHHH
Confidence 999999943
No 241
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.54 E-value=0.36 Score=42.34 Aligned_cols=48 Identities=17% Similarity=0.348 Sum_probs=37.1
Q ss_pred ccccccccccC--CceEcCccccccHHhHHHHHHc-------CCCCCCCCcccCCCC
Q 015728 13 FRCPISLDLFT--DPVTLCTGQTYDRSSIEKWLAA-------GNLTCPVTMQTLHDP 60 (401)
Q Consensus 13 ~~C~iC~~~~~--~Pv~~~Cgh~fc~~Ci~~~~~~-------~~~~CP~c~~~~~~~ 60 (401)
--|.+|.-.+. |-+.+-|-|.|.+.|+.+|... ....||.|...+-+.
T Consensus 51 pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp 107 (299)
T KOG3970|consen 51 PNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPP 107 (299)
T ss_pred CCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCC
Confidence 35888988664 5566889999999999999774 246799998776543
No 242
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.52 E-value=0.1 Score=52.63 Aligned_cols=39 Identities=36% Similarity=0.660 Sum_probs=31.6
Q ss_pred CCccccccccccc----CCceEcCccccccHHhHHHHHHcCCCCCC
Q 015728 10 PHLFRCPISLDLF----TDPVTLCTGQTYDRSSIEKWLAAGNLTCP 51 (401)
Q Consensus 10 ~~~~~C~iC~~~~----~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP 51 (401)
.+.+.|+||...| ..||.+.|||+.|+.|.+..+.. +||
T Consensus 9 ~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~---scp 51 (861)
T KOG3161|consen 9 VLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNA---SCP 51 (861)
T ss_pred HHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhc---cCC
Confidence 4568899997666 46999999999999999887663 466
No 243
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=91.44 E-value=5.7 Score=42.34 Aligned_cols=170 Identities=16% Similarity=0.177 Sum_probs=109.6
Q ss_pred CchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc---cCCchhHHHHHHHHHHhcCCC
Q 015728 188 SKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV---HHNSEASDAGVRAFSALCSTE 264 (401)
Q Consensus 188 g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL---~~~~~~~~~a~~aL~~Ls~~~ 264 (401)
+.+..|+.+....+.++......+|...+..+. +....+.. -+.|.++.++ ++++.+...+-..+..|+...
T Consensus 530 ~ild~L~qlas~~s~evl~llmE~Ls~vv~~dp---ef~as~~s--kI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~ 604 (1005)
T KOG2274|consen 530 MILDGLLQLASKSSDEVLVLLMEALSSVVKLDP---EFAASMES--KICPLTINLFLKYSEDPQVASLAQDLFEELLQIA 604 (1005)
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHHhccCh---hhhhhhhc--chhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence 334455555555566777777777777744444 44444432 3567777766 456778888888888999877
Q ss_pred chhHHHHhcCcHHHHHHHHHhhc-cccchHHHHHHHHHHHHhCCHh--hHHHHHhCCCcHHHHHHHHHhcCChhHHHHHH
Q 015728 265 TNRKTLVQEGAINGLIAYISNAL-TRERSLAAIAMARIEQLLAIEN--SKDALINNPNGVYALVKMVFRVSDHEGSENAI 341 (401)
Q Consensus 265 ~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~~~~~a~~~L~~La~~~~--~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~ 341 (401)
.|...+.+. .||.|+..|.... .........|+.+|.-+.+... --..+. .-+.|++++..+.+++...-+++-
T Consensus 605 ~~~g~m~e~-~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~--~~~FpaVak~tlHsdD~~tlQ~~~ 681 (1005)
T KOG2274|consen 605 ANYGPMQER-LIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLI--CYAFPAVAKITLHSDDHETLQNAT 681 (1005)
T ss_pred HhhcchHHH-HHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHH--HHHhHHhHhheeecCChHHHHhHH
Confidence 777776654 8999999997310 1125677778888886665322 112222 146889999666777778888999
Q ss_pred HHHHHHhcCCHHHHHHHHHcCcHH
Q 015728 342 NSLMMICCDSLQAREEAICAGVLT 365 (401)
Q Consensus 342 ~~L~~l~~~~~~~~~~~~~~g~v~ 365 (401)
.+|..+-..+.+....=..+++.-
T Consensus 682 EcLra~Is~~~eq~~t~~~e~g~~ 705 (1005)
T KOG2274|consen 682 ECLRALISVTLEQLLTWHDEPGHN 705 (1005)
T ss_pred HHHHHHHhcCHHHHHhhccCCCcc
Confidence 999888777654433333444443
No 244
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=91.30 E-value=9.9 Score=35.86 Aligned_cols=219 Identities=13% Similarity=0.106 Sum_probs=136.3
Q ss_pred HHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcc-cCCc
Q 015728 111 TKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLN-EESK 189 (401)
Q Consensus 111 ~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~-~~g~ 189 (401)
.+.-|++.+.++.-..+..+....+.-.-..++.+++..-.. .++|.+.+- +.+.++.+..-. +.+. --..
T Consensus 165 Trlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~------~qlQY~SL~-~iw~lTf~~~~a-qdi~K~~dl 236 (432)
T COG5231 165 TRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGV------KQLQYNSLI-IIWILTFSKECA-QDIDKMDDL 236 (432)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhh------hhhHHHHHH-HHHHHhcCHHHH-HHHHHHHHH
Confidence 567788888888877654444444555667888888765543 679999999 888888765433 3331 2245
Q ss_pred hHHHHHHhhcCCH-HHHHHHHHHHHHHHhcccchhhhhhhhc---cchHHHHHHHHHc-cC---CchhHHHHHHH-----
Q 015728 190 MESFIVLFEHGSC-SIKKRLCHLVEVIISSSHETKELCCKLG---KDDRLLREIISLV-HH---NSEASDAGVRA----- 256 (401)
Q Consensus 190 i~~Lv~~L~~~~~-~~~~~aa~~L~~l~s~~~~~~~~~~~i~---~~~g~i~~Lv~lL-~~---~~~~~~~a~~a----- 256 (401)
|..|+.+.+.... .+-.-+..++.+++...+ |..|- .. |-+.+-|.+| .. +.+.+..--..
T Consensus 237 i~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~p-----K~~I~~~lll-~~~~k~vq~L~erkysDEel~~di~~i~s~l~ 310 (432)
T COG5231 237 INDLIAIVKERAKEKVLRLCCGIVANVLDKSP-----KGYIFSPLLL-NDISKCVQVLLERKYSDEELVIDIERIRSRLV 310 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----cchhhhhHhh-cchHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 7777777765433 344556667777734232 22222 21 3245666666 21 22221111100
Q ss_pred ------------HHH-----hcCC---------CchhHHHHhc--CcHHHHHHHHHhhccccch-HHHHHHHHHHHHhC-
Q 015728 257 ------------FSA-----LCST---------ETNRKTLVQE--GAINGLIAYISNALTRERS-LAAIAMARIEQLLA- 306 (401)
Q Consensus 257 ------------L~~-----Ls~~---------~~n~~~iv~~--G~v~~Lv~lL~~~~~~~~~-~~~~a~~~L~~La~- 306 (401)
+.. |+.. ++|...+.+. .++..|.++|+ ...+. ....|+.=|..+.+
T Consensus 311 ~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq---~n~~nt~i~vAc~Di~~~Vr~ 387 (432)
T COG5231 311 QNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQ---SNNPNTWICVACSDIFQLVRA 387 (432)
T ss_pred hhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHh---cCCCCceEeeeHhhHHHHHHh
Confidence 111 1111 1266666653 47889999998 33333 55667777777774
Q ss_pred CHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHh
Q 015728 307 IENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMIC 348 (401)
Q Consensus 307 ~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~ 348 (401)
.||++..+. ..|+=..+++ ++++++++++-.|+.++..+-
T Consensus 388 ~PE~~~vl~-Kyg~k~~im~-L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 388 SPEINAVLS-KYGVKEIIMN-LINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred CchHHHHHH-HhhhHHHHHH-HhcCCCchhhHHHHHHHHHHH
Confidence 688888886 8899999999 678888899999999987754
No 245
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.29 E-value=8.2 Score=42.01 Aligned_cols=254 Identities=15% Similarity=0.150 Sum_probs=141.8
Q ss_pred HHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHH
Q 015728 116 VQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIV 195 (401)
Q Consensus 116 ~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~ 195 (401)
...|-.+.+.+.+|...+.++.++..++.+|-+.. -+-..+. ++..|...+... + .+..+-.+++
T Consensus 663 wDcLisllKnnteNqklFreanGvklilpflinde----------hRSslLr-ivscLitvdpkq---v-hhqelmalVd 727 (2799)
T KOG1788|consen 663 WDCLISLLKNNTENQKLFREANGVKLILPFLINDE----------HRSSLLR-IVSCLITVDPKQ---V-HHQELMALVD 727 (2799)
T ss_pred HHHHHHHHhccchhhHHHHhhcCceEEEEeeechH----------HHHHHHH-HHHHHhccCccc---c-cHHHHHHHHH
Confidence 45678888999999999999999988888884432 1222233 444444333221 1 3345677888
Q ss_pred HhhcCCH------------HHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc---cCC--------chhHHH
Q 015728 196 LFEHGSC------------SIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV---HHN--------SEASDA 252 (401)
Q Consensus 196 ~L~~~~~------------~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL---~~~--------~~~~~~ 252 (401)
.|++|-. ..+.....+++.++..+. ..+...+++.|+ ..|...| .+- .-....
T Consensus 728 tLksgmvt~IsgeqyklhfsllcdlmGalwrivgvng---saqrvFgeatGF-slLlttLhtfqgftelhdesDlcvyik 803 (2799)
T KOG1788|consen 728 TLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNG---SAQRVFGEATGF-SLLLTTLHTFQGFTELHDESDLCVYIK 803 (2799)
T ss_pred HHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCc---hheeehhccccH-HHHHHHHHHhccchhcCCchhhhhHHH
Confidence 8887421 122334445666633333 667777887554 5555555 221 112222
Q ss_pred HHHHHHH-----hcCCCchhHHHH-------------hcC---------cHHHHHHHHHhh-ccccchHHHHHHHHHHHH
Q 015728 253 GVRAFSA-----LCSTETNRKTLV-------------QEG---------AINGLIAYISNA-LTRERSLAAIAMARIEQL 304 (401)
Q Consensus 253 a~~aL~~-----Ls~~~~n~~~iv-------------~~G---------~v~~Lv~lL~~~-~~~~~~~~~~a~~~L~~L 304 (401)
-...|+. ++.++.|+.++- +.| .|..|.++--.. -.+.-...-.|+..+..+
T Consensus 804 lfkilFrlfTlavcenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfel 883 (2799)
T KOG1788|consen 804 LFKILFRLFTLAVCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFEL 883 (2799)
T ss_pred HHHHHHHHHHHHHhhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhc
Confidence 2333332 235666776542 233 122222211100 000000111233333333
Q ss_pred hC-----------CHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHh--
Q 015728 305 LA-----------IENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLL-- 371 (401)
Q Consensus 305 a~-----------~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll-- 371 (401)
-. -...++.+. ..|++..+++.++- ..++.+-.-++.|-+++..++...+..-..|.++.|++++
T Consensus 884 ednifavntPsGqfnpdk~~iy-nagavRvlirslLl-nypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiyp 961 (2799)
T KOG1788|consen 884 EDNIFAVNTPSGQFNPDKQKIY-NAGAVRVLIRSLLL-NYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYP 961 (2799)
T ss_pred ccceeeeccCCCCcCchHhhhc-ccchhHHHHHHHHh-hChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhh
Confidence 21 112345665 78999999996654 4557888899999999988887776777889999998876
Q ss_pred -hcCCCHHHHHHHHHHHHHHH
Q 015728 372 -QSQCSNRTKTKARMLLKLLR 391 (401)
Q Consensus 372 -~~~~~~~~~~~A~~~L~~l~ 391 (401)
.+| +.---..|.+++.+|.
T Consensus 962 flsg-sspfLshalkIvemLg 981 (2799)
T KOG1788|consen 962 FLSG-SSPFLSHALKIVEMLG 981 (2799)
T ss_pred hhcC-CchHhhccHHHHHHHh
Confidence 244 4445556666666554
No 246
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.28 E-value=2.9 Score=43.74 Aligned_cols=173 Identities=16% Similarity=0.203 Sum_probs=101.2
Q ss_pred HhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHccCCchhHHHHHHHHHHhcC-CCc---------
Q 015728 196 LFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHHNSEASDAGVRAFSALCS-TET--------- 265 (401)
Q Consensus 196 ~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~a~~aL~~Ls~-~~~--------- 265 (401)
+|.+.++.+...++.+.+++ +-.. . ...++.+|+++|+++.+.+...+..+..++. .+.
T Consensus 295 Ll~S~n~sVVmA~aql~y~l-AP~~-------~---~~~i~kaLvrLLrs~~~vqyvvL~nIa~~s~~~~~lF~P~lKsF 363 (968)
T KOG1060|consen 295 LLQSRNPSVVMAVAQLFYHL-APKN-------Q---VTKIAKALVRLLRSNREVQYVVLQNIATISIKRPTLFEPHLKSF 363 (968)
T ss_pred HHhcCCcHHHHHHHhHHHhh-CCHH-------H---HHHHHHHHHHHHhcCCcchhhhHHHHHHHHhcchhhhhhhhhce
Confidence 45678888889999999999 5321 1 1367899999998777777776666666652 221
Q ss_pred -------hh---------HHHHhcCcHHHHHHHHHhh-ccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHH
Q 015728 266 -------NR---------KTLVQEGAINGLIAYISNA-LTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMV 328 (401)
Q Consensus 266 -------n~---------~~iv~~G~v~~Lv~lL~~~-~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l 328 (401)
.. ..++.++-|..+++=|..- .+.+.++...++.+|...+.. -..+ ..-+...||. +
T Consensus 364 fv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~---~~sv--~~tCL~gLv~-L 437 (968)
T KOG1060|consen 364 FVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASR---IGSV--TDTCLNGLVQ-L 437 (968)
T ss_pred EeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHh---hCch--hhHHHHHHHH-H
Confidence 11 1233444455554444221 134445666666666655531 1111 3456778888 4
Q ss_pred HhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 015728 329 FRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLL 390 (401)
Q Consensus 329 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l 390 (401)
++..+..+...++.++..|-..++....+ .+..|..+++.--.+.+|....|++...
T Consensus 438 lsshde~Vv~eaV~vIk~Llq~~p~~h~~-----ii~~La~lldti~vp~ARA~IiWLige~ 494 (968)
T KOG1060|consen 438 LSSHDELVVAEAVVVIKRLLQKDPAEHLE-----ILFQLARLLDTILVPAARAGIIWLIGEY 494 (968)
T ss_pred HhcccchhHHHHHHHHHHHHhhChHHHHH-----HHHHHHHHhhhhhhhhhhceeeeeehhh
Confidence 66666677778888888887766533322 3345555554333445555555544433
No 247
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=91.18 E-value=0.63 Score=37.26 Aligned_cols=72 Identities=13% Similarity=0.098 Sum_probs=55.0
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728 320 GVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS 392 (401)
Q Consensus 320 ~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~ 392 (401)
.+..|+++|..+.++.....|+.=|..++.+.++.+..+-+.|+=..++.||.++ ++.+|..|...+..+-.
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~-d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHE-DPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-S-SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 5678888443444555666677777888888888887788999999999999987 99999999999887654
No 248
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=91.14 E-value=0.37 Score=47.40 Aligned_cols=185 Identities=9% Similarity=-0.011 Sum_probs=103.3
Q ss_pred cChHHHHHHHHHHHHHHhc--CchhhhHH-HhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCc----hh
Q 015728 107 ATLETKLQIVQKIHVVLRE--SPPASNCL-IQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGE----TE 179 (401)
Q Consensus 107 ~~~~~~~~a~~~L~~l~~~--~~~~r~~i-~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~----~~ 179 (401)
.+++.+..-...+|.+.-. ++.-|... .-..+.......|.+..-. ++++++| .+.|++..= +.
T Consensus 400 ~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln--------~r~Kaaw-tlgnITdAL~~~~Ps 470 (728)
T KOG4535|consen 400 NDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLN--------VRAKAAW-SLGNITDALIVNMPT 470 (728)
T ss_pred cchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHh--------HHHHHHH-HhhhhHHHHHcCCCC
Confidence 3555555555555555421 22222222 1233344444555554433 7899999 888887210 00
Q ss_pred hhhhcccC-C-chHHHHHHhhc---CCHHHHHHHHHHHHHHHhcc-cc--hhhhhhhhccchHHHHHHHHHc--cCCchh
Q 015728 180 SLNLLNEE-S-KMESFIVLFEH---GSCSIKKRLCHLVEVIISSS-HE--TKELCCKLGKDDRLLREIISLV--HHNSEA 249 (401)
Q Consensus 180 ~~~~v~~~-g-~i~~Lv~~L~~---~~~~~~~~aa~~L~~l~s~~-~~--~~~~~~~i~~~~g~i~~Lv~lL--~~~~~~ 249 (401)
.+..-... | .+..++..... .+..++.+|..+|+++ ... ++ ...++..+ +|.+..++.-. .+..++
T Consensus 471 ~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnl-lQvlq~i~~~~~~e~~---~~~~~~l~~~v~~~~~~kV 546 (728)
T KOG4535|consen 471 PDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNL-LQFLQPIEKPTFAEII---EESIQALISTVLTEAAMKV 546 (728)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhH-HHHHHHhhhccHHHHH---HHHHHhcccceeccccccc
Confidence 00000000 1 12233322211 2457889999999998 432 21 01233333 24444444433 456689
Q ss_pred HHHHHHHHHHhcCCCchhHHHHh--cCcHHHHHHHHHhhccccchHHHHHHHHHHHHhC
Q 015728 250 SDAGVRAFSALCSTETNRKTLVQ--EGAINGLIAYISNALTRERSLAAIAMARIEQLLA 306 (401)
Q Consensus 250 ~~~a~~aL~~Ls~~~~n~~~iv~--~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~ 306 (401)
+.+|..+|.||..++.-+-+=.+ .-+++.|..|+.+ ..+-.++.+|+++|..-..
T Consensus 547 ~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~--~~NFKVRi~AA~aL~vp~~ 603 (728)
T KOG4535|consen 547 RWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTS--CKNFKVRIRAAAALSVPGK 603 (728)
T ss_pred chHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHH--hccceEeehhhhhhcCCCC
Confidence 99999999999998875433322 3378889999986 5788899999999886664
No 249
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=91.07 E-value=14 Score=34.84 Aligned_cols=170 Identities=16% Similarity=0.178 Sum_probs=107.4
Q ss_pred CchHHHH-HHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cCCchhHHHHHHHHHHhcCCCc
Q 015728 188 SKMESFI-VLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-HHNSEASDAGVRAFSALCSTET 265 (401)
Q Consensus 188 g~i~~Lv-~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~a~~aL~~Ls~~~~ 265 (401)
+.+..|+ ..+++.+..+|+.|...|+.. +..+ + .++. ..++.+...+ .++.+++..|+.+|..+....+
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~-~Lld-----~-~~a~--~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g 96 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLC-CLLD-----K-ELAK--EHLPLFLQALQKDDEEVKITALKALFDLLLTHG 96 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHH-HHhC-----h-HHHH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC
Confidence 4455555 566888999999999999998 7654 1 2222 3467777777 4566799999999999875333
Q ss_pred --hhHH-------HHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcC---C
Q 015728 266 --NRKT-------LVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVS---D 333 (401)
Q Consensus 266 --n~~~-------iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~---~ 333 (401)
.-.. .-....+..+.+.|. +.+.+++..|+..++-|--.+.... .+..+..|+-+-+... +
T Consensus 97 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~---~~~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~ 169 (298)
T PF12719_consen 97 IDIFDSESDNDESVDSKSLLKILTKFLD---SENPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDN 169 (298)
T ss_pred chhccchhccCccchHhHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCc
Confidence 1111 112346667777777 5577888889888887664332211 0233445555334432 2
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcC
Q 015728 334 HEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQ 374 (401)
Q Consensus 334 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~ 374 (401)
...++.-...+-..|..+++. ++.+..+.++.+..+....
T Consensus 170 ~~LrQ~L~~Ffp~y~~s~~~~-Q~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 170 QRLRQCLSVFFPVYASSSPEN-QERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred HHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHhCc
Confidence 344554444555566665544 4788888888888887665
No 250
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=90.81 E-value=0.2 Score=46.19 Aligned_cols=49 Identities=27% Similarity=0.545 Sum_probs=38.7
Q ss_pred CCCCcccccccccccC---CceEcCccccccHHhHHHHHHcC--CCCCCCCccc
Q 015728 8 TIPHLFRCPISLDLFT---DPVTLCTGQTYDRSSIEKWLAAG--NLTCPVTMQT 56 (401)
Q Consensus 8 ~~~~~~~C~iC~~~~~---~Pv~~~Cgh~fc~~Ci~~~~~~~--~~~CP~c~~~ 56 (401)
..+.-|.||+-.+.-. .|+.+.|||..-...+.+.-+.| .+.||.|...
T Consensus 332 hfHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~ 385 (396)
T COG5109 332 HFHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPEM 385 (396)
T ss_pred cccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCcc
Confidence 3456799999777654 48889999999999988877665 4889999543
No 251
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.72 E-value=25 Score=37.18 Aligned_cols=247 Identities=11% Similarity=0.113 Sum_probs=118.6
Q ss_pred ChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhh-------
Q 015728 108 TLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETES------- 180 (401)
Q Consensus 108 ~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~------- 180 (401)
+.-...+|+..+..+.-.++ +.+.- ++..|--+++++... .+..|.. +|+.++....+.
T Consensus 258 ~emV~~EaArai~~l~~~~~---r~l~p--avs~Lq~flssp~~~--------lRfaAvR-tLnkvAm~~P~~v~~cN~e 323 (865)
T KOG1078|consen 258 SEMVIYEAARAIVSLPNTNS---RELAP--AVSVLQLFLSSPKVA--------LRFAAVR-TLNKVAMKHPQAVTVCNLD 323 (865)
T ss_pred hHHHHHHHHHHHhhccccCH---hhcch--HHHHHHHHhcCcHHH--------HHHHHHH-HHHHHHHhCCccccccchh
Confidence 34466788888887765543 22222 677888888887654 7888888 999887544321
Q ss_pred -hhhcccC---CchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHccCCchhHHHHHHH
Q 015728 181 -LNLLNEE---SKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHHNSEASDAGVRA 256 (401)
Q Consensus 181 -~~~v~~~---g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~a~~a 256 (401)
-.++-+. -+-..+-.+|+.|+.+....-..-+.++++.-+ |++|-.+++ +|..|..... .-+.--...
T Consensus 324 lE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~dis--DeFKivvvd---ai~sLc~~fp---~k~~~~m~F 395 (865)
T KOG1078|consen 324 LESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDIS--DEFKIVVVD---AIRSLCLKFP---RKHTVMMNF 395 (865)
T ss_pred HHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhcc--ccceEEeHH---HHHHHHhhcc---HHHHHHHHH
Confidence 1112111 123334456677766555544444444423222 255544432 2333332221 011111122
Q ss_pred HHHhcCCC---chhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHH------HhCCC--------
Q 015728 257 FSALCSTE---TNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDAL------INNPN-------- 319 (401)
Q Consensus 257 L~~Ls~~~---~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~------~~~~g-------- 319 (401)
|.++-..+ +-+.. .|..++.... ..++.++.++.-|+..-.+-+.+... .+.+|
T Consensus 396 L~~~Lr~eGg~e~K~a-----ivd~Ii~iie----~~pdsKe~~L~~LCefIEDce~~~i~~rILhlLG~EgP~a~~Psk 466 (865)
T KOG1078|consen 396 LSNMLREEGGFEFKRA-----IVDAIIDIIE----ENPDSKERGLEHLCEFIEDCEFTQIAVRILHLLGKEGPKAPNPSK 466 (865)
T ss_pred HHHHHHhccCchHHHH-----HHHHHHHHHH----hCcchhhHHHHHHHHHHHhccchHHHHHHHHHHhccCCCCCCcch
Confidence 22222111 11222 2223333333 12333444444333333222211110 01111
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728 320 GVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS 392 (401)
Q Consensus 320 ~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~ 392 (401)
.|...... .-..+..++-.|+.+|..+...++.. ...+...|...+.+. ++++|+.|...|+.+..
T Consensus 467 yir~iyNR-viLEn~ivRaaAv~alaKfg~~~~~l-----~~sI~vllkRc~~D~-DdevRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 467 YIRFIYNR-VILENAIVRAAAVSALAKFGAQDVVL-----LPSILVLLKRCLNDS-DDEVRDRATFYLKNLEE 532 (865)
T ss_pred hhHHHhhh-hhhhhhhhHHHHHHHHHHHhcCCCCc-----cccHHHHHHHHhcCc-hHHHHHHHHHHHHHhhh
Confidence 12222221 11234467777888888877443322 233445556666565 89999999999999885
No 252
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=90.70 E-value=8.7 Score=39.33 Aligned_cols=101 Identities=16% Similarity=0.180 Sum_probs=56.1
Q ss_pred HHHHHHccCCchhHHHHHHHHHHhc-CCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCH-hhHHHH
Q 015728 237 REIISLVHHNSEASDAGVRAFSALC-STETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIE-NSKDAL 314 (401)
Q Consensus 237 ~~Lv~lL~~~~~~~~~a~~aL~~Ls-~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~-~~~~~~ 314 (401)
..++...+++...++-|+..|.... ..|+-... ++..++.|.. +.+..++..|+..|-.+|.+. +.-..+
T Consensus 26 ~~il~~~kg~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcE---Ded~~iR~~aik~lp~~ck~~~~~v~kv 97 (556)
T PF05918_consen 26 KEILDGVKGSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCE---DEDVQIRKQAIKGLPQLCKDNPEHVSKV 97 (556)
T ss_dssp HHHHHGGGS-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT----SSHHHHHHHHHHGGGG--T--T-HHHH
T ss_pred HHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHh---cccHHHHHHHHHhHHHHHHhHHHHHhHH
Confidence 3444444566667777777777655 45554443 5667788887 677778888888888888753 333444
Q ss_pred HhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCH
Q 015728 315 INNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSL 352 (401)
Q Consensus 315 ~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~ 352 (401)
+..|++ |+...++.-....-.+|..|-..++
T Consensus 98 ------aDvL~Q-lL~tdd~~E~~~v~~sL~~ll~~d~ 128 (556)
T PF05918_consen 98 ------ADVLVQ-LLQTDDPVELDAVKNSLMSLLKQDP 128 (556)
T ss_dssp ------HHHHHH-HTT---HHHHHHHHHHHHHHHHH-H
T ss_pred ------HHHHHH-HHhcccHHHHHHHHHHHHHHHhcCc
Confidence 346777 4555554555555566666655443
No 253
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=90.56 E-value=0.27 Score=31.75 Aligned_cols=39 Identities=13% Similarity=0.272 Sum_probs=23.9
Q ss_pred ccccccccCCceEc---CccccccHHhHHHHHHcCCC-CCCCC
Q 015728 15 CPISLDLFTDPVTL---CTGQTYDRSSIEKWLAAGNL-TCPVT 53 (401)
Q Consensus 15 C~iC~~~~~~Pv~~---~Cgh~fc~~Ci~~~~~~~~~-~CP~c 53 (401)
|.+|.++...-+.= .|+-.+-..|+..||+.... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 67899988877763 49988999999999986443 59987
No 254
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=90.53 E-value=0.38 Score=28.45 Aligned_cols=29 Identities=7% Similarity=0.096 Sum_probs=25.1
Q ss_pred cHHHHHHHHHhhccccchHHHHHHHHHHHHhC
Q 015728 275 AINGLIAYISNALTRERSLAAIAMARIEQLLA 306 (401)
Q Consensus 275 ~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~ 306 (401)
.+|.+++++. +++.+++..|+.+|..++.
T Consensus 1 llp~l~~~l~---D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLN---DPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT----SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcC---CCCHHHHHHHHHHHHHHHh
Confidence 3789999999 7899999999999998874
No 255
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.41 E-value=9.8 Score=42.97 Aligned_cols=275 Identities=14% Similarity=0.237 Sum_probs=146.9
Q ss_pred hhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHh--cCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchh
Q 015728 102 LQSHEATLETKLQIVQKIHVVLRESPPASNCLIQ--LGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETE 179 (401)
Q Consensus 102 l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~--~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~ 179 (401)
|...+.++..|+.|+..+..++... ++.+.. --.||.|...=-+++ ..+|..-.. +-+.|..+.
T Consensus 964 LAnh~A~wnSk~GaAfGf~~i~~~a---~~kl~p~l~kLIPrLyRY~yDP~--------~~Vq~aM~s-IW~~Li~D~-- 1029 (1702)
T KOG0915|consen 964 LANHNATWNSKKGAAFGFGAIAKQA---GEKLEPYLKKLIPRLYRYQYDPD--------KKVQDAMTS-IWNALITDS-- 1029 (1702)
T ss_pred HhhhhchhhcccchhhchHHHHHHH---HHhhhhHHHHhhHHHhhhccCCc--------HHHHHHHHH-HHHHhccCh--
Confidence 3445556677777888887777654 222221 125777777655555 346554333 555555332
Q ss_pred hhhhccc--CCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHccC-Cch---hHHHH
Q 015728 180 SLNLLNE--ESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHH-NSE---ASDAG 253 (401)
Q Consensus 180 ~~~~v~~--~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~-~~~---~~~~a 253 (401)
+..+.+ ...+..|+.-|.+....+|+.++.+|..| -...++++..+.+- ..+..+.+.+++ ... +-..+
T Consensus 1030 -k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dL-l~g~~~~~~~e~lp---elw~~~fRvmDDIKEsVR~aa~~~ 1104 (1702)
T KOG0915|consen 1030 -KKVVDEYLNEILDELLVNLTSKEWRVREASCLALADL-LQGRPFDQVKEKLP---ELWEAAFRVMDDIKESVREAADKA 1104 (1702)
T ss_pred -HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH-HcCCChHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223211 12344555555666778999999999999 44444556666552 456666666643 222 44445
Q ss_pred HHHHHHhcC---CCchhHHHHhcCcHHHHHHHHHh-h-ccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHH
Q 015728 254 VRAFSALCS---TETNRKTLVQEGAINGLIAYISN-A-LTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMV 328 (401)
Q Consensus 254 ~~aL~~Ls~---~~~n~~~iv~~G~v~~Lv~lL~~-~-~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l 328 (401)
+.+|..|+. +..|-..- ..++..++..|-+ + .+.-.+++.-++.++.-|+.+.....+-- -+..||.|+. .
T Consensus 1105 ~~~lsKl~vr~~d~~~~~~~--~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~-~~~LIp~ll~-~ 1180 (1702)
T KOG0915|consen 1105 ARALSKLCVRICDVTNGAKG--KEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPH-FPKLIPLLLN-A 1180 (1702)
T ss_pred HHHHHHHHhhhcccCCcccH--HHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcch-hhHHHHHHHH-H
Confidence 556666652 22221111 1133333333321 1 12346788899999999997655433332 3346666666 3
Q ss_pred HhcCChh-----------HHHHHHHHH-HHHhcCCH--HHHHH-------HHHcCcHHHHHHHhhcCCCHHHHHHHHHHH
Q 015728 329 FRVSDHE-----------GSENAINSL-MMICCDSL--QAREE-------AICAGVLTQLLLLLQSQCSNRTKTKARMLL 387 (401)
Q Consensus 329 ~~~~~~~-----------~~~~a~~~L-~~l~~~~~--~~~~~-------~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L 387 (401)
...-++. ....|+..+ .+.++.++ +.... =+-+..+|.+.++++.+=.-.+|-.++..+
T Consensus 1181 ~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI 1260 (1702)
T KOG0915|consen 1181 YSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFI 1260 (1702)
T ss_pred ccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHH
Confidence 3322211 112222222 23344333 11111 122567888899998774456787888877
Q ss_pred HHHHHhhHHhhc
Q 015728 388 KLLRSKWAEELK 399 (401)
Q Consensus 388 ~~l~~~~~e~~~ 399 (401)
-+|....+-|.+
T Consensus 1261 ~~L~~r~~~emt 1272 (1702)
T KOG0915|consen 1261 SLLVQRLGSEMT 1272 (1702)
T ss_pred HHHHHHhccccC
Confidence 777766665543
No 256
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=90.37 E-value=11 Score=32.52 Aligned_cols=90 Identities=16% Similarity=0.169 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHH-H
Q 015728 159 VQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLL-R 237 (401)
Q Consensus 159 ~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i-~ 237 (401)
+.++.+++. +++-|+...++ ++ ...++.+...|+++++.+|..|..+|.+|+.. + -. ...|-+ .
T Consensus 2 ~~vR~n~i~-~l~DL~~r~~~---~v--e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-d---~i-----k~k~~l~~ 66 (178)
T PF12717_consen 2 PSVRNNAII-ALGDLCIRYPN---LV--EPYLPNLYKCLRDEDPLVRKTALLVLSHLILE-D---MI-----KVKGQLFS 66 (178)
T ss_pred HHHHHHHHH-HHHHHHHhCcH---HH--HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-C---ce-----eehhhhhH
Confidence 568888888 88877644332 33 24689999999999999999999999999332 2 11 112433 5
Q ss_pred HHHHHc-cCCchhHHHHHHHHHHhcCC
Q 015728 238 EIISLV-HHNSEASDAGVRAFSALCST 263 (401)
Q Consensus 238 ~Lv~lL-~~~~~~~~~a~~aL~~Ls~~ 263 (401)
.++.++ +++++++..|..++..+...
T Consensus 67 ~~l~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 67 RILKLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 666666 56778999999999998864
No 257
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=90.02 E-value=24 Score=35.99 Aligned_cols=267 Identities=11% Similarity=0.100 Sum_probs=147.2
Q ss_pred ChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHH-HHH-HhccCCcccchhhhHHHHHHHHHHHHHhhcC-----Cchhh
Q 015728 108 TLETKLQIVQKIHVVLRESPPASNCLIQLGFLPL-LLK-QLFGKAESKFSQVYVQFVEESLSCVQKLLLV-----GETES 180 (401)
Q Consensus 108 ~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~-Lv~-lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~-----~~~~~ 180 (401)
....+++++..+...|..... ...+...+.|-. ++. -++.+. +..++-.|+.|+...+-. ..++.
T Consensus 147 p~~~k~~sl~~~gy~ces~~P-e~li~~sN~il~aiv~ga~k~et-------~~avRLaaL~aL~dsl~fv~~nf~~E~e 218 (858)
T COG5215 147 PVSGKCESLGICGYHCESEAP-EDLIQMSNVILFAIVMGALKNET-------TSAVRLAALKALMDSLMFVQGNFCYEEE 218 (858)
T ss_pred chHhHHHHHHHHHHHhhccCH-HHHHHHhhHHHHHHHHhhcccCc-------hHHHHHHHHHHHHHHHHHHHHhhcchhh
Confidence 445788899999888866443 333333443322 222 222222 245777777743332221 11111
Q ss_pred hhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHH-HHHc-cCCchhHHHHHHHHH
Q 015728 181 LNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREI-ISLV-HHNSEASDAGVRAFS 258 (401)
Q Consensus 181 ~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~L-v~lL-~~~~~~~~~a~~aL~ 258 (401)
+.. .++...+.-+.++.+++..|...|..|....= ..-+.+.+ .++-.| .+-+ +.+.++...|...-.
T Consensus 219 rNy-----~mqvvceatq~~d~e~q~aafgCl~kim~LyY---~fm~~ymE--~aL~alt~~~mks~nd~va~qavEfWs 288 (858)
T COG5215 219 RNY-----FMQVVCEATQGNDEELQHAAFGCLNKIMMLYY---KFMQSYME--NALAALTGRFMKSQNDEVAIQAVEFWS 288 (858)
T ss_pred hch-----hheeeehhccCCcHHHHHHHHHHHHHHHHHHH---HHHHHHHH--HHHHHHHHHHhcCcchHHHHHHHHHHH
Confidence 222 24444566677788899888888888743221 22222222 222222 2333 445667777766554
Q ss_pred HhcCCCc-----------------hhHHHHhcCcHHHHHHHHHhhc-cccc---hHHHHHHHHHHHHhCCHhhHHHHHhC
Q 015728 259 ALCSTET-----------------NRKTLVQEGAINGLIAYISNAL-TRER---SLAAIAMARIEQLLAIENSKDALINN 317 (401)
Q Consensus 259 ~Ls~~~~-----------------n~~~iv~~G~v~~Lv~lL~~~~-~~~~---~~~~~a~~~L~~La~~~~~~~~~~~~ 317 (401)
.+|..+- +-.+..-++++|.|+.||.+.+ +.+. ..-..|...|-..+..-. ..++ +
T Consensus 289 ticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~g--d~i~-~ 365 (858)
T COG5215 289 TICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKG--DKIM-R 365 (858)
T ss_pred HHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhh--hHhH-H
Confidence 4442110 1111223458999999997421 1111 223334444444432111 1222 1
Q ss_pred CCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHHh
Q 015728 318 PNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAEE 397 (401)
Q Consensus 318 ~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e~ 397 (401)
+ |-.+|+-=++..+-..++.|+.++.++-.+..+....-+-..++|.+..+|.+. .-.+|+.++|.+..++.|.++-
T Consensus 366 p--Vl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~-~l~vk~ttAwc~g~iad~va~~ 442 (858)
T COG5215 366 P--VLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDS-CLWVKSTTAWCFGAIADHVAMI 442 (858)
T ss_pred H--HHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccc-eeehhhHHHHHHHHHHHHHHHh
Confidence 1 334454334455557889999999998876544444556677888888888654 7899999999999999988876
Q ss_pred h
Q 015728 398 L 398 (401)
Q Consensus 398 ~ 398 (401)
+
T Consensus 443 i 443 (858)
T COG5215 443 I 443 (858)
T ss_pred c
Confidence 5
No 258
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=89.92 E-value=5.4 Score=36.61 Aligned_cols=98 Identities=17% Similarity=0.184 Sum_probs=75.4
Q ss_pred hHHHHHHHHHHHHh-CCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHH
Q 015728 292 SLAAIAMARIEQLL-AIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLL 370 (401)
Q Consensus 292 ~~~~~a~~~L~~La-~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~l 370 (401)
.....|+.+|.-++ -++..|..+. +..++..|+.++-....+..+-.++.+|..+.-+++.....+-+.+|+..++.+
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~-r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~l 184 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFH-REQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSL 184 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHh-hhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHH
Confidence 34566778888777 4777777775 889999999954244567889999999988887777777799999999999999
Q ss_pred hhcCCC-HHHHHHHHHHHHHH
Q 015728 371 LQSQCS-NRTKTKARMLLKLL 390 (401)
Q Consensus 371 l~~~~~-~~~~~~A~~~L~~l 390 (401)
+++... ..+|-+....|...
T Consensus 185 lk~~~~~~~~r~K~~EFL~fy 205 (257)
T PF08045_consen 185 LKSKSTDRELRLKCIEFLYFY 205 (257)
T ss_pred HccccccHHHhHHHHHHHHHH
Confidence 987643 46777777666543
No 259
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=89.63 E-value=28 Score=36.11 Aligned_cols=189 Identities=12% Similarity=0.146 Sum_probs=102.9
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHccCCchhHHHHHHHHHHhcCCCchhHHHHhc
Q 015728 194 IVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHHNSEASDAGVRAFSALCSTETNRKTLVQE 273 (401)
Q Consensus 194 v~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~a~~aL~~Ls~~~~n~~~iv~~ 273 (401)
++.+..-..+.+--|..+|+.++...+-+...+..... ...+..++..+..++..+..++++|.|+..++.++.-+...
T Consensus 550 l~~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~-~~~~~~li~~~~~~~an~ll~vR~L~N~f~~~~g~~~~~s~ 628 (745)
T KOG0301|consen 550 LAILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEG-QNLVGTLIPILNADPANQLLVVRCLANLFSNPAGRELFMSR 628 (745)
T ss_pred HHHHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhh-hHHHHhhhcccccchhHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 34445556677777777777773332211122222111 13555566666666778899999999999998888887754
Q ss_pred CcHHHHHHHHHhhccccchHHHHHHHHHH-HHhCCHhhHHHHHhCCCcHHHHHHHHHhc----CChhHHHHHHHHHHHHh
Q 015728 274 GAINGLIAYISNALTRERSLAAIAMARIE-QLLAIENSKDALINNPNGVYALVKMVFRV----SDHEGSENAINSLMMIC 348 (401)
Q Consensus 274 G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~-~La~~~~~~~~~~~~~g~i~~Lv~~l~~~----~~~~~~~~a~~~L~~l~ 348 (401)
...++..+..+...+..-...|.++|+ |++.. ..+-..+.|+.+.|..++..- .+-++.-..+.||.+|+
T Consensus 629 --~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~---l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~ 703 (745)
T KOG0301|consen 629 --LESILDPVIEASSLSNKNLQIALATLALNYSVL---LIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLM 703 (745)
T ss_pred --HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHH---HHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhc
Confidence 333444333221233333344444433 33321 001111235555555543221 22234555677778888
Q ss_pred cCCHHHHHHHHHcCcHHHHHHHhhcC-CCHHHHHHHHHHHHH
Q 015728 349 CDSLQAREEAICAGVLTQLLLLLQSQ-CSNRTKTKARMLLKL 389 (401)
Q Consensus 349 ~~~~~~~~~~~~~g~v~~L~~ll~~~-~~~~~~~~A~~~L~~ 389 (401)
..+...+ .+.+.-.+..+..-+++- ..+..+..|..+|++
T Consensus 704 t~~~~~~-~~A~~~~v~sia~~~~~~~~~~~~k~~a~~il~~ 744 (745)
T KOG0301|consen 704 TVDASVI-QLAKNRSVDSIAKKLKEAVSNPSGKNIARDILSL 744 (745)
T ss_pred cccHHHH-HHHHhcCHHHHHHHHHHhccCchhhHHHHHHHhc
Confidence 8765554 555555667777766543 345666666666654
No 260
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=89.57 E-value=3.7 Score=29.82 Aligned_cols=67 Identities=15% Similarity=-0.014 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 015728 294 AAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAG 362 (401)
Q Consensus 294 ~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g 362 (401)
.+.|++++.+++..+.+-..+. +.+.|+.++++....+....+--|..+|..+++. .+-.+.+-+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~-~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T-~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLD-ESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST-EEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHh-hcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC-HHHHHHHHHcC
Confidence 4679999999999988888884 7899999999555556667888899999988876 45554444443
No 261
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=89.16 E-value=3.1 Score=35.99 Aligned_cols=92 Identities=12% Similarity=0.110 Sum_probs=68.7
Q ss_pred hHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCC
Q 015728 109 LETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEES 188 (401)
Q Consensus 109 ~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g 188 (401)
+..|..++..+..++..-+..-+. .+|.+...|++++ +.++..|+. +|..|...+--+ + +..
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~ve~-----~~~~l~~~L~D~~--------~~VR~~al~-~Ls~Li~~d~ik---~-k~~ 63 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNLVEP-----YLPNLYKCLRDED--------PLVRKTALL-VLSHLILEDMIK---V-KGQ 63 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHh-----HHHHHHHHHCCCC--------HHHHHHHHH-HHHHHHHcCcee---e-hhh
Confidence 567888999999999877743322 4889999999887 459999999 777776433111 1 222
Q ss_pred chHHHHHHhhcCCHHHHHHHHHHHHHHHhcc
Q 015728 189 KMESFIVLFEHGSCSIKKRLCHLVEVIISSS 219 (401)
Q Consensus 189 ~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~ 219 (401)
.+..++.++...+++++..|...+..+ +..
T Consensus 64 l~~~~l~~l~D~~~~Ir~~A~~~~~e~-~~~ 93 (178)
T PF12717_consen 64 LFSRILKLLVDENPEIRSLARSFFSEL-LKK 93 (178)
T ss_pred hhHHHHHHHcCCCHHHHHHHHHHHHHH-HHh
Confidence 348888888888999999999999999 543
No 262
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=89.13 E-value=29 Score=35.63 Aligned_cols=134 Identities=10% Similarity=0.099 Sum_probs=82.8
Q ss_pred hHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhh
Q 015728 94 SLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLL 173 (401)
Q Consensus 94 ~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l 173 (401)
-.......|....++..+++-|.+-|....+.-|.-...- |..++.|..+.+ ..++..|+. -|-.+
T Consensus 21 ~~~~y~~il~~~kg~~k~K~Laaq~I~kffk~FP~l~~~A-----i~a~~DLcEDed--------~~iR~~aik-~lp~~ 86 (556)
T PF05918_consen 21 HEEDYKEILDGVKGSPKEKRLAAQFIPKFFKHFPDLQEEA-----INAQLDLCEDED--------VQIRKQAIK-GLPQL 86 (556)
T ss_dssp GHHHHHHHHHGGGS-HHHHHHHHHHHHHHHCC-GGGHHHH-----HHHHHHHHT-SS--------HHHHHHHHH-HGGGG
T ss_pred CHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHhccc--------HHHHHHHHH-hHHHH
Confidence 3455666677667889999999999999999988665544 778899988776 449999999 88888
Q ss_pred cCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc----cCCchh
Q 015728 174 LVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV----HHNSEA 249 (401)
Q Consensus 174 ~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL----~~~~~~ 249 (401)
+.++.+...- .+..|+.+|.+.+......+-.+|..|...+. .|.+..|..-+ .++..+
T Consensus 87 ck~~~~~v~k-----vaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~------------k~tL~~lf~~i~~~~~~de~~ 149 (556)
T PF05918_consen 87 CKDNPEHVSK-----VADVLVQLLQTDDPVELDAVKNSLMSLLKQDP------------KGTLTGLFSQIESSKSGDEQV 149 (556)
T ss_dssp --T--T-HHH-----HHHHHHHHTT---HHHHHHHHHHHHHHHHH-H------------HHHHHHHHHHHH---HS-HHH
T ss_pred HHhHHHHHhH-----HHHHHHHHHhcccHHHHHHHHHHHHHHHhcCc------------HHHHHHHHHHHHhcccCchHH
Confidence 8665433222 35678889988877666555556655523322 23444444433 244557
Q ss_pred HHHHHHHHH
Q 015728 250 SDAGVRAFS 258 (401)
Q Consensus 250 ~~~a~~aL~ 258 (401)
++.+...|.
T Consensus 150 Re~~lkFl~ 158 (556)
T PF05918_consen 150 RERALKFLR 158 (556)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887775
No 263
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=89.11 E-value=7.8 Score=32.78 Aligned_cols=133 Identities=14% Similarity=0.154 Sum_probs=83.6
Q ss_pred CchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHh-CCHhhHHHHHhCCCcHHHH
Q 015728 246 NSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLL-AIENSKDALINNPNGVYAL 324 (401)
Q Consensus 246 ~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La-~~~~~~~~~~~~~g~i~~L 324 (401)
..+.+..++-++..+- +..+...-+ -+-..+-.++. .++.+-...+..+|..|= ..++-...+...+|..+.+
T Consensus 18 ~~~~r~~a~v~l~k~l--~~~~~~~~~-~~~~~i~~~~~---~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l 91 (157)
T PF11701_consen 18 PEEVRSHALVILSKLL--DAAREEFKE-KISDFIESLLD---EGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESL 91 (157)
T ss_dssp SCCHHHHHHHHHHHHH--HHHHHHHHH-HHHHHHHHHHC---CHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHH
T ss_pred CHhHHHHHHHHHHHHH--HHhHHHHHH-HHHHHHHHHHc---cccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHH
Confidence 3457777777777662 223333222 12333333444 444556677888887776 4567667777799999999
Q ss_pred HHHHH-hcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHH-HHHHHHHH
Q 015728 325 VKMVF-RVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNR-TKTKARML 386 (401)
Q Consensus 325 v~~l~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~-~~~~A~~~ 386 (401)
+.++. ...+...+..++.+|..=| .+.++| ..+...+++.|-.+.+.+.++. .|..|+-.
T Consensus 92 ~~~~~~~~~~~~~~~~~lell~aAc-~d~~~r-~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~ 153 (157)
T PF11701_consen 92 LPLASRKSKDRKVQKAALELLSAAC-IDKSCR-TFISKNYVSWLKELYKNSKDDSEIRVLAAVG 153 (157)
T ss_dssp HHHHH-CTS-HHHHHHHHHHHHHHT-TSHHHH-HCCHHHCHHHHHHHTTTCC-HH-CHHHHHHH
T ss_pred HHHHhcccCCHHHHHHHHHHHHHHH-ccHHHH-HHHHHHHHHHHHHHHccccchHHHHHHHHHH
Confidence 99544 1556677777888887644 456666 7777788899999996553555 56555543
No 264
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=89.10 E-value=0.11 Score=46.37 Aligned_cols=47 Identities=11% Similarity=0.260 Sum_probs=31.2
Q ss_pred cccccccccc-CCceE-cCccccccHHhHHHHHHcCCCCCCCCcccCCCCCC
Q 015728 13 FRCPISLDLF-TDPVT-LCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSI 62 (401)
Q Consensus 13 ~~C~iC~~~~-~~Pv~-~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~ 62 (401)
..|..|...- .+|.- +.|+|.||..|..... ...||.|++++....+
T Consensus 4 VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~---~~~C~lCkk~ir~i~l 52 (233)
T KOG4739|consen 4 VHCNKCFRFPSQDPFFLTACRHVFCEPCLKASS---PDVCPLCKKSIRIIQL 52 (233)
T ss_pred EEeccccccCCCCceeeeechhhhhhhhcccCC---ccccccccceeeeeec
Confidence 4577676522 45554 5899999999975322 2379999998654333
No 265
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=88.92 E-value=12 Score=39.02 Aligned_cols=115 Identities=13% Similarity=0.125 Sum_probs=71.3
Q ss_pred cCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHH
Q 015728 136 LGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVI 215 (401)
Q Consensus 136 ~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l 215 (401)
+|.+..|+.-+.+.+ ..|+...+. +++.+.......-+-+ -.+....+...|....+.+|..|..+|..+
T Consensus 84 ~~~f~hlLRg~Eskd--------k~VRfrvlq-ila~l~d~~~eidd~v-fn~l~e~l~~Rl~Drep~VRiqAv~aLsrl 153 (892)
T KOG2025|consen 84 AGTFYHLLRGTESKD--------KKVRFRVLQ-ILALLSDENAEIDDDV-FNKLNEKLLIRLKDREPNVRIQAVLALSRL 153 (892)
T ss_pred HHHHHHHHhcccCcc--------hhHHHHHHH-HHHHHhccccccCHHH-HHHHHHHHHHHHhccCchHHHHHHHHHHHH
Confidence 344555555555555 459999999 9998773221111112 224455666666677788999999999999
Q ss_pred HhcccchhhhhhhhccchHHHHHHHHHcc--CCchhHHHHHHHHHHhcCCCchhHHHHh
Q 015728 216 ISSSHETKELCCKLGKDDRLLREIISLVH--HNSEASDAGVRAFSALCSTETNRKTLVQ 272 (401)
Q Consensus 216 ~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~--~~~~~~~~a~~aL~~Ls~~~~n~~~iv~ 272 (401)
..++ .++. ..+...++.+++ +++++++.| |.|++.++.....|++
T Consensus 154 -Q~d~-~dee-------~~v~n~l~~liqnDpS~EVRRaa---LsnI~vdnsTlp~Ive 200 (892)
T KOG2025|consen 154 -QGDP-KDEE-------CPVVNLLKDLIQNDPSDEVRRAA---LSNISVDNSTLPCIVE 200 (892)
T ss_pred -hcCC-CCCc-------ccHHHHHHHHHhcCCcHHHHHHH---HHhhccCcccchhHHH
Confidence 6543 1121 135577888884 445677764 5677766666666654
No 266
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=88.48 E-value=0.3 Score=37.36 Aligned_cols=27 Identities=19% Similarity=0.576 Sum_probs=23.0
Q ss_pred CccccccHHhHHHHHHcCCCCCCCCccc
Q 015728 29 CTGQTYDRSSIEKWLAAGNLTCPVTMQT 56 (401)
Q Consensus 29 ~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~ 56 (401)
.|.|.|...||.+|+++ ...||.|.+.
T Consensus 80 ~CNHaFH~hCisrWlkt-r~vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKT-RNVCPLDNKE 106 (114)
T ss_pred ecchHHHHHHHHHHHhh-cCcCCCcCcc
Confidence 49999999999999994 5579999764
No 267
>PHA03096 p28-like protein; Provisional
Probab=88.40 E-value=0.27 Score=45.82 Aligned_cols=42 Identities=19% Similarity=0.309 Sum_probs=28.8
Q ss_pred ccccccccccC-CceE------c-CccccccHHhHHHHHHcC--CCCCCCCc
Q 015728 13 FRCPISLDLFT-DPVT------L-CTGQTYDRSSIEKWLAAG--NLTCPVTM 54 (401)
Q Consensus 13 ~~C~iC~~~~~-~Pv~------~-~Cgh~fc~~Ci~~~~~~~--~~~CP~c~ 54 (401)
-.|.||++... .|.. + .|.|.||..|+..|.... ..+||.|+
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~ 230 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENR 230 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCcccc
Confidence 46999999432 3221 3 599999999999998753 23455554
No 268
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=88.08 E-value=3.2 Score=35.18 Aligned_cols=130 Identities=15% Similarity=0.254 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHhhcCCchhhhhhcccCCchHHHH-HHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHH
Q 015728 161 FVEESLSCVQKLLLVGETESLNLLNEESKMESFI-VLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREI 239 (401)
Q Consensus 161 ~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv-~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~L 239 (401)
++-.++- ++..+- +..++... ..+...+ ..+..++.+....+..++..+ =... ++....+...+|.++.+
T Consensus 21 ~r~~a~v-~l~k~l---~~~~~~~~--~~~~~~i~~~~~~~~~d~~i~~~~~l~~l-fp~~--~dv~~~l~~~eg~~~~l 91 (157)
T PF11701_consen 21 VRSHALV-ILSKLL---DAAREEFK--EKISDFIESLLDEGEMDSLIIAFSALTAL-FPGP--PDVGSELFLSEGFLESL 91 (157)
T ss_dssp HHHHHHH-HHHHHH---HHHHHHHH--HHHHHHHHHHHCCHHCCHHHHHHHHHHHH-CTTT--HHHHHHHCCTTTHHHHH
T ss_pred HHHHHHH-HHHHHH---HHhHHHHH--HHHHHHHHHHHccccchhHHHHHHHHHHH-hCCC--HHHHHHHHhhhhHHHHH
Confidence 7777777 555442 22222221 1233333 344555556777777777776 2222 37777777667999999
Q ss_pred HHHcc--C-CchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccch-HHHHHHHHHH
Q 015728 240 ISLVH--H-NSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERS-LAAIAMARIE 302 (401)
Q Consensus 240 v~lL~--~-~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~-~~~~a~~~L~ 302 (401)
+.+.. . +...+..++.+|..=|.+..-|..+.+. +++.|-+++.+ +.++. ++..|+-.|.
T Consensus 92 ~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~-~~~~L~~~~~~--~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 92 LPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKN-YVSWLKELYKN--SKDDSEIRVLAAVGLC 155 (157)
T ss_dssp HHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHH-CHHHHHHHTTT--CC-HH-CHHHHHHHHH
T ss_pred HHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHH-HHHHHHHHHcc--ccchHHHHHHHHHHHh
Confidence 99995 3 4457777777777766666666665554 78888888863 44444 6666666554
No 269
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=87.53 E-value=48 Score=37.00 Aligned_cols=220 Identities=11% Similarity=0.094 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHHHhhcCC--chhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccc-hhhhhhhhccchHH
Q 015728 159 VQFVEESLSCVQKLLLVG--ETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHE-TKELCCKLGKDDRL 235 (401)
Q Consensus 159 ~~~~~~a~~~~L~~l~~~--~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~-~~~~~~~i~~~~g~ 235 (401)
+..+.+|+. +|..++.. ++... ...+|-++.++..+...+|..|..+|..+.+...+ .+.+.....+ -+
T Consensus 437 ~~tK~~ALe-Ll~~lS~~i~de~~L-----DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~e--Yl 508 (1431)
T KOG1240|consen 437 IQTKLAALE-LLQELSTYIDDEVKL-----DRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPE--YL 508 (1431)
T ss_pred chhHHHHHH-HHHHHhhhcchHHHH-----hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHh--hh
Confidence 345677888 88877732 22222 24589999999999999999999999887454432 2233334433 47
Q ss_pred HHHHHHHccC-Cch-hHHHHHHHHHHhcC------------------C-Cch-----------hHHHHhcCcHHHHHHHH
Q 015728 236 LREIISLVHH-NSE-ASDAGVRAFSALCS------------------T-ETN-----------RKTLVQEGAINGLIAYI 283 (401)
Q Consensus 236 i~~Lv~lL~~-~~~-~~~~a~~aL~~Ls~------------------~-~~n-----------~~~iv~~G~v~~Lv~lL 283 (401)
+|.|-+++.+ +.. ++-.=|..|..|+. + +++ ..++. .++=...+.||
T Consensus 509 fP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~-~~V~~~v~sLl 587 (1431)
T KOG1240|consen 509 FPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALH-HTVEQMVSSLL 587 (1431)
T ss_pred hhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHH-HHHHHHHHHHH
Confidence 7888888844 322 33333333322221 1 111 11111 11222333455
Q ss_pred HhhccccchHHHHHHHHHHHHhC----------------------CHhhHHHHHh--------------CCCcHHHHHHH
Q 015728 284 SNALTRERSLAAIAMARIEQLLA----------------------IENSKDALIN--------------NPNGVYALVKM 327 (401)
Q Consensus 284 ~~~~~~~~~~~~~a~~~L~~La~----------------------~~~~~~~~~~--------------~~g~i~~Lv~~ 327 (401)
. ++++-++..-+..|.-||. ++.-|.++.. +++.+|-|.+
T Consensus 588 s---d~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q- 663 (1431)
T KOG1240|consen 588 S---DSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQ- 663 (1431)
T ss_pred c---CCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHH-
Confidence 5 4555666666666666664 2233433331 2233455555
Q ss_pred HHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhh
Q 015728 328 VFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKW 394 (401)
Q Consensus 328 l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~ 394 (401)
=+.++++.+...|+.+|..|+..+ ..+ +..--..++....+|-.+ +...|..+..++....+.+
T Consensus 664 ~ltD~EE~Viv~aL~~ls~Lik~~-ll~-K~~v~~i~~~v~PlL~hP-N~WIR~~~~~iI~~~~~~l 727 (1431)
T KOG1240|consen 664 GLTDGEEAVIVSALGSLSILIKLG-LLR-KPAVKDILQDVLPLLCHP-NLWIRRAVLGIIAAIARQL 727 (1431)
T ss_pred hccCcchhhHHHHHHHHHHHHHhc-ccc-hHHHHHHHHhhhhheeCc-hHHHHHHHHHHHHHHHhhh
Confidence 356677788999999999999864 333 222223344455555555 8899999999888777644
No 270
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.20 E-value=0.37 Score=47.15 Aligned_cols=48 Identities=15% Similarity=0.255 Sum_probs=32.7
Q ss_pred cccccccc-cccCCce---EcCccccccHHhHHHHHHc-----CCCCCCC--CcccCCC
Q 015728 12 LFRCPISL-DLFTDPV---TLCTGQTYDRSSIEKWLAA-----GNLTCPV--TMQTLHD 59 (401)
Q Consensus 12 ~~~C~iC~-~~~~~Pv---~~~Cgh~fc~~Ci~~~~~~-----~~~~CP~--c~~~~~~ 59 (401)
...|.||. +...... +..|+|.||..|+.+++.. ....||. |...++.
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~ 204 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTL 204 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCH
Confidence 56899999 4433322 2469999999999999873 3466776 4444443
No 271
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=87.12 E-value=1.3 Score=43.65 Aligned_cols=155 Identities=13% Similarity=0.092 Sum_probs=86.7
Q ss_pred chHHHHHHhhcCCHHHHHHHHHHHHHHHhcc-c-chhhhhhhhccchH-HHHHHHHHc---c-CCchhHHHHHHHHHHhc
Q 015728 189 KMESFIVLFEHGSCSIKKRLCHLVEVIISSS-H-ETKELCCKLGKDDR-LLREIISLV---H-HNSEASDAGVRAFSALC 261 (401)
Q Consensus 189 ~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~-~-~~~~~~~~i~~~~g-~i~~Lv~lL---~-~~~~~~~~a~~aL~~Ls 261 (401)
+...+...|.+.....|+.+++++.+| +.. . ..+..+..-....| .|..++..- . .++.++.+|.++|.|+.
T Consensus 434 aa~~il~sl~d~~ln~r~KaawtlgnI-TdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnll 512 (728)
T KOG4535|consen 434 AANAILMSLEDKSLNVRAKAAWSLGNI-TDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLL 512 (728)
T ss_pred HHHHHHHHhhhHhHhHHHHHHHHhhhh-HHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHH
Confidence 344445555555677899999999999 421 1 11111111111112 233333332 1 24569999999999998
Q ss_pred CCCc----hhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHh-CCCcHHHHHHHHHhcCChhH
Q 015728 262 STET----NRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALIN-NPNGVYALVKMVFRVSDHEG 336 (401)
Q Consensus 262 ~~~~----n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~-~~g~i~~Lv~~l~~~~~~~~ 336 (401)
..-+ --......|.+..++.-.-. .....++=+++-++.||-+++.-.-+-.. ..-+.+.|..++...++=++
T Consensus 513 Qvlq~i~~~~~~e~~~~~~~~l~~~v~~--~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKV 590 (728)
T KOG4535|consen 513 QFLQPIEKPTFAEIIEESIQALISTVLT--EAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKV 590 (728)
T ss_pred HHHHHhhhccHHHHHHHHHHhcccceec--ccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceE
Confidence 5322 11111223333333332221 45667899999999999987654221111 12357778886656666677
Q ss_pred HHHHHHHHHH
Q 015728 337 SENAINSLMM 346 (401)
Q Consensus 337 ~~~a~~~L~~ 346 (401)
+-+|+.+|..
T Consensus 591 Ri~AA~aL~v 600 (728)
T KOG4535|consen 591 RIRAAAALSV 600 (728)
T ss_pred eehhhhhhcC
Confidence 7788888754
No 272
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.05 E-value=45 Score=35.43 Aligned_cols=206 Identities=14% Similarity=0.115 Sum_probs=126.8
Q ss_pred HHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcc
Q 015728 140 PLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSS 219 (401)
Q Consensus 140 ~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~ 219 (401)
.-|..||.|..+. ...+|..-++..++.+.+- ....|.+|+-..+.+.+++.-.-..|... +.
T Consensus 38 ~dL~~lLdSnkd~--------~KleAmKRIia~iA~G~dv-------S~~Fp~VVKNVaskn~EVKkLVyvYLlrY-AE- 100 (968)
T KOG1060|consen 38 DDLKQLLDSNKDS--------LKLEAMKRIIALIAKGKDV-------SLLFPAVVKNVASKNIEVKKLVYVYLLRY-AE- 100 (968)
T ss_pred HHHHHHHhccccH--------HHHHHHHHHHHHHhcCCcH-------HHHHHHHHHHhhccCHHHHHHHHHHHHHH-hh-
Confidence 4577888877654 4555655577877765541 23578888888888999998776666666 42
Q ss_pred cchhhhhhhhccchHHHHHHHHHcc-CCchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhh-ccccchHHHHH
Q 015728 220 HETKELCCKLGKDDRLLREIISLVH-HNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNA-LTRERSLAAIA 297 (401)
Q Consensus 220 ~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~-~~~~~~~~~~a 297 (401)
..+.+.-. -|..+=+-|+ .++-.+-.|+++|..+ |-.++ +|.++.-++.+ .+.++-++..|
T Consensus 101 -----eqpdLALL--SIntfQk~L~DpN~LiRasALRvlSsI------Rvp~I----aPI~llAIk~~~~D~s~yVRk~A 163 (968)
T KOG1060|consen 101 -----EQPDLALL--SINTFQKALKDPNQLIRASALRVLSSI------RVPMI----APIMLLAIKKAVTDPSPYVRKTA 163 (968)
T ss_pred -----cCCCceee--eHHHHHhhhcCCcHHHHHHHHHHHHhc------chhhH----HHHHHHHHHHHhcCCcHHHHHHH
Confidence 23333221 2466666674 4555666666665443 22222 22222222211 16677888888
Q ss_pred HHHHHHHhC-CHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCC
Q 015728 298 MARIEQLLA-IENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCS 376 (401)
Q Consensus 298 ~~~L~~La~-~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~ 376 (401)
+-+|--|=. +++.+.++. .+++.|+.+.++.+.-.|+.+.-.+|-+.-+ +=++-...|..++-.= +
T Consensus 164 A~AIpKLYsLd~e~k~qL~-------e~I~~LLaD~splVvgsAv~AF~evCPerld-----LIHknyrklC~ll~dv-d 230 (968)
T KOG1060|consen 164 AHAIPKLYSLDPEQKDQLE-------EVIKKLLADRSPLVVGSAVMAFEEVCPERLD-----LIHKNYRKLCRLLPDV-D 230 (968)
T ss_pred HHhhHHHhcCChhhHHHHH-------HHHHHHhcCCCCcchhHHHHHHHHhchhHHH-----HhhHHHHHHHhhccch-h
Confidence 888776653 566666664 3666688888889999999999998864211 2245567777777554 5
Q ss_pred HHHHHHHHHHHHHHHH
Q 015728 377 NRTKTKARMLLKLLRS 392 (401)
Q Consensus 377 ~~~~~~A~~~L~~l~~ 392 (401)
+..+-..-.+|-.-+|
T Consensus 231 eWgQvvlI~mL~RYAR 246 (968)
T KOG1060|consen 231 EWGQVVLINMLTRYAR 246 (968)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 6666665555544444
No 273
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=86.99 E-value=34 Score=33.93 Aligned_cols=187 Identities=16% Similarity=0.122 Sum_probs=111.0
Q ss_pred chHHHHHHhhcC-CHHHHHHHHHHHHHHHhcccchhhhhhhhc-cchHHHHHHHHHc--cCCc----hhHHHHHHHHHHh
Q 015728 189 KMESFIVLFEHG-SCSIKKRLCHLVEVIISSSHETKELCCKLG-KDDRLLREIISLV--HHNS----EASDAGVRAFSAL 260 (401)
Q Consensus 189 ~i~~Lv~~L~~~-~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~-~~~g~i~~Lv~lL--~~~~----~~~~~a~~aL~~L 260 (401)
.+..++.+..+. +...+..++..+..| .. |..-+ .....+..+..-+ .... ...+...|....|
T Consensus 190 ll~~l~~~~~~~~~~~~~~~~~~~la~L-vN-------K~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaL 261 (415)
T PF12460_consen 190 LLQSLLNLALSSEDEFSRLAALQLLASL-VN-------KWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKAL 261 (415)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHH-Hc-------CCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHH
Confidence 455666655443 456677777777777 22 21000 1112333333333 1112 2444445555555
Q ss_pred c-CCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCC-Hhh-------------HHHHHhCCCcHHHHH
Q 015728 261 C-STETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAI-ENS-------------KDALINNPNGVYALV 325 (401)
Q Consensus 261 s-~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~-~~~-------------~~~~~~~~g~i~~Lv 325 (401)
. +++..-. ..+..|+++|. + +++...++..+..|..+ ++- |+.+. ...+|.|+
T Consensus 262 v~R~~~~~~-----~~~~~L~~lL~---~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F--~~~~p~L~ 329 (415)
T PF12460_consen 262 VMRGHPLAT-----ELLDKLLELLS---S--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFF--TQVLPKLL 329 (415)
T ss_pred HHcCCchHH-----HHHHHHHHHhC---C--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHH--HHHHHHHH
Confidence 4 2322222 24566888887 3 45667788888877766 321 33443 24688888
Q ss_pred HHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHHh
Q 015728 326 KMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAEE 397 (401)
Q Consensus 326 ~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e~ 397 (401)
+. .+..+...+.+-+.+|..|..+-+...-.---...+|.|++-|..+ +...+..+..+|..+-+..++-
T Consensus 330 ~~-~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~-~~~v~~s~L~tL~~~l~~~~~~ 399 (415)
T PF12460_consen 330 EG-FKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLP-DADVLLSSLETLKMILEEAPEL 399 (415)
T ss_pred HH-HhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHcCHHH
Confidence 84 5555546888899999999888664433333455778888888766 7789999999999888755543
No 274
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=86.34 E-value=17 Score=39.66 Aligned_cols=151 Identities=11% Similarity=0.069 Sum_probs=88.9
Q ss_pred HHHHHHHHHcc-CCchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHH
Q 015728 234 RLLREIISLVH-HNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKD 312 (401)
Q Consensus 234 g~i~~Lv~lL~-~~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~ 312 (401)
++|..|...|+ .+..++..|++-+..++.... ..+++ .+|...++++.. ..+...-..|+-+|+.||.-+--.-
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~~Lad-~vi~svid~~~p--~e~~~aWHgacLaLAELA~rGlLlp 415 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--PELAD-QVIGSVIDLFNP--AEDDSAWHGACLALAELALRGLLLP 415 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCc--HHHHH-HHHHHHHHhcCc--CCchhHHHHHHHHHHHHHhcCCcch
Confidence 67788888884 567799999999999986444 33343 377788887763 2345566788889999985432222
Q ss_pred HHHhCCCcHHHHHHHHH-------hcCChhHHHHHHHHHHHHhcCCHHH-HHHHHHcCcHHHHHHHhhcCCCHHHHHHHH
Q 015728 313 ALINNPNGVYALVKMVF-------RVSDHEGSENAINSLMMICCDSLQA-REEAICAGVLTQLLLLLQSQCSNRTKTKAR 384 (401)
Q Consensus 313 ~~~~~~g~i~~Lv~~l~-------~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~ 384 (401)
... +.++|.+++.+. ......+++.|..++|+++...... .+-++..=+-..|..-+.++ .-.-|+.|+
T Consensus 416 s~l--~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDr-evncRRAAs 492 (1133)
T KOG1943|consen 416 SLL--EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDR-EVNCRRAAS 492 (1133)
T ss_pred HHH--HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCc-hhhHhHHHH
Confidence 111 145666666442 1123468999999999998775321 11222211112222233444 444555555
Q ss_pred HHH-HHHHH
Q 015728 385 MLL-KLLRS 392 (401)
Q Consensus 385 ~~L-~~l~~ 392 (401)
+++ ..+.+
T Consensus 493 AAlqE~VGR 501 (1133)
T KOG1943|consen 493 AALQENVGR 501 (1133)
T ss_pred HHHHHHhcc
Confidence 554 44444
No 275
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=85.85 E-value=0.31 Score=38.19 Aligned_cols=33 Identities=18% Similarity=0.281 Sum_probs=26.8
Q ss_pred CCCCcccccccccccCCceE--cCccccccHHhHH
Q 015728 8 TIPHLFRCPISLDLFTDPVT--LCTGQTYDRSSIE 40 (401)
Q Consensus 8 ~~~~~~~C~iC~~~~~~Pv~--~~Cgh~fc~~Ci~ 40 (401)
.+.+.-.|++|...+.+++. .||||.|...|+.
T Consensus 74 ~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 74 VITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred EECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 45677889999998876664 5999999999975
No 276
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=85.85 E-value=56 Score=35.29 Aligned_cols=230 Identities=12% Similarity=0.134 Sum_probs=122.1
Q ss_pred hHHHHHH-HHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccC
Q 015728 109 LETKLQI-VQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEE 187 (401)
Q Consensus 109 ~~~~~~a-~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~ 187 (401)
.++.... ...|...++-+++.... .++-..|.++.+...-+.. |.+...+-. ++..++. ..++..-+ ..
T Consensus 543 s~evl~llmE~Ls~vv~~dpef~as-~~skI~P~~i~lF~k~s~D------P~V~~~~qd-~f~el~q-~~~~~g~m-~e 612 (1005)
T KOG2274|consen 543 SDEVLVLLMEALSSVVKLDPEFAAS-MESKICPLTINLFLKYSED------PQVASLAQD-LFEELLQ-IAANYGPM-QE 612 (1005)
T ss_pred cHHHHHHHHHHHHHHhccChhhhhh-hhcchhHHHHHHHHHhcCC------chHHHHHHH-HHHHHHH-HHHhhcch-HH
Confidence 3344444 45566777777754433 3666778877776443332 546555555 4444442 22222233 23
Q ss_pred CchHHHHHHhhcCC----HHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc--cCCchhHHHHHHHHHHhc
Q 015728 188 SKMESFIVLFEHGS----CSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV--HHNSEASDAGVRAFSALC 261 (401)
Q Consensus 188 g~i~~Lv~~L~~~~----~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL--~~~~~~~~~a~~aL~~Ls 261 (401)
-.||.++..|.... ......++.+|.-++... ++|-....+. -+.|++.+.. +++.+...++..+|+.+-
T Consensus 613 ~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~t-p~pL~~~l~~---~~FpaVak~tlHsdD~~tlQ~~~EcLra~I 688 (1005)
T KOG2274|consen 613 RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNT-PSPLPNLLIC---YAFPAVAKITLHSDDHETLQNATECLRALI 688 (1005)
T ss_pred HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcC-CCCccHHHHH---HHhHHhHhheeecCChHHHHhHHHHHHHHH
Confidence 46999999998765 566667777777553333 2333344442 3679999877 567789999999999876
Q ss_pred CC-CchhHHHHhcCcHH--HHHHHHHhhccccchHHHHHHHHHHHHhCC--HhhHHHHHhCC-CcHHHHHHHHHhcCChh
Q 015728 262 ST-ETNRKTLVQEGAIN--GLIAYISNALTRERSLAAIAMARIEQLLAI--ENSKDALINNP-NGVYALVKMVFRVSDHE 335 (401)
Q Consensus 262 ~~-~~n~~~iv~~G~v~--~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~--~~~~~~~~~~~-g~i~~Lv~~l~~~~~~~ 335 (401)
.. .+-...--..++.. .+++.+.. --+++.-+.+++-...|... ...-.++..+- -...+.+..|.+..+.+
T Consensus 689 s~~~eq~~t~~~e~g~~~~yImqV~sq--LLdp~~sds~a~~VG~lV~tLit~a~~el~~n~d~IL~Avisrmq~ae~ls 766 (1005)
T KOG2274|consen 689 SVTLEQLLTWHDEPGHNLWYIMQVLSQ--LLDPETSDSAAAFVGPLVLTLITHASSELGPNLDQILRAVISRLQQAETLS 766 (1005)
T ss_pred hcCHHHHHhhccCCCccHHHHHHHHHH--HcCCccchhHHHHHhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHhhhHH
Confidence 43 22222222222222 44444432 11222333333333333211 01111111000 12334444456666677
Q ss_pred HHHHHHHHHHHHhcCCHHH
Q 015728 336 GSENAINSLMMICCDSLQA 354 (401)
Q Consensus 336 ~~~~a~~~L~~l~~~~~~~ 354 (401)
+.++-+.+++.|...+.+.
T Consensus 767 viQsLi~VfahL~~t~~~~ 785 (1005)
T KOG2274|consen 767 VIQSLIMVFAHLVHTDLDQ 785 (1005)
T ss_pred HHHHHHHHHHHHhhCCHHH
Confidence 8888888888888765443
No 277
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.82 E-value=31 Score=37.39 Aligned_cols=156 Identities=17% Similarity=0.176 Sum_probs=89.6
Q ss_pred hHHHHHHHHHcc---C------CchhHHHHHHHHHHhcC---CCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHH
Q 015728 233 DRLLREIISLVH---H------NSEASDAGVRAFSALCS---TETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMAR 300 (401)
Q Consensus 233 ~g~i~~Lv~lL~---~------~~~~~~~a~~aL~~Ls~---~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~ 300 (401)
.|+++.++.+|. + ++..+.-|++++.+|+. -++.-+..++.=.++.+...++ ++..-++..|+++
T Consensus 409 ~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~---s~~g~Lrarac~v 485 (1010)
T KOG1991|consen 409 PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQ---SPYGYLRARACWV 485 (1010)
T ss_pred hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhc---CchhHHHHHHHHH
Confidence 588999999983 1 23466777777777773 2223334455546666666777 6777899999999
Q ss_pred HHHHhC-CHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHH--HcCcHHHHHHHhhcCCCH
Q 015728 301 IEQLLA-IENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAI--CAGVLTQLLLLLQSQCSN 377 (401)
Q Consensus 301 L~~La~-~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~g~v~~L~~ll~~~~~~ 377 (401)
+...+. +-.+...+. .+.....+.|..+.+-.++-.|+-+|..+-.+.+...+.+. --+.++.|+.+++.-
T Consensus 486 l~~~~~~df~d~~~l~---~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~--- 559 (1010)
T KOG1991|consen 486 LSQFSSIDFKDPNNLS---EALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEV--- 559 (1010)
T ss_pred HHHHHhccCCChHHHH---HHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhc---
Confidence 999993 222222221 12334455344366666788888999888777543322121 234445555555332
Q ss_pred HHHHHHHHHHHHHHHhhHHhh
Q 015728 378 RTKTKARMLLKLLRSKWAEEL 398 (401)
Q Consensus 378 ~~~~~A~~~L~~l~~~~~e~~ 398 (401)
--+--...+.-+-..++||+
T Consensus 560 -End~Lt~vme~iV~~fseEl 579 (1010)
T KOG1991|consen 560 -ENDDLTNVMEKIVCKFSEEL 579 (1010)
T ss_pred -chhHHHHHHHHHHHHHHHhh
Confidence 22223333443333455554
No 278
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.75 E-value=58 Score=35.44 Aligned_cols=230 Identities=9% Similarity=0.073 Sum_probs=112.1
Q ss_pred hcChHHHHHHHHHHHHHHh---cCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhh
Q 015728 106 EATLETKLQIVQKIHVVLR---ESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLN 182 (401)
Q Consensus 106 ~~~~~~~~~a~~~L~~l~~---~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~ 182 (401)
+.+...+-.|+..+..+++ +.+..+..+.. =.++...-.++|+..- .+-.|+| +++.++.-+-....
T Consensus 429 ~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~-flv~hVfP~f~s~~g~--------Lrarac~-vl~~~~~~df~d~~ 498 (1010)
T KOG1991|consen 429 NKNPRQKDGALRMVGSLASILLKKSPYKSQMEY-FLVNHVFPEFQSPYGY--------LRARACW-VLSQFSSIDFKDPN 498 (1010)
T ss_pred ccChhhhhhHHHHHHHHHHHHccCCchHHHHHH-HHHHHhhHhhcCchhH--------HHHHHHH-HHHHHHhccCCChH
Confidence 3455556666666666653 33334444422 1233334445565543 8899999 99988732211112
Q ss_pred hcccCCchHHHHHHhh-cCCHHHHHHHHHHHHHHHhcccchhhhhhhhccc-hHHHHHHHHHccC-CchhHHHHHHHHHH
Q 015728 183 LLNEESKMESFIVLFE-HGSCSIKKRLCHLVEVIISSSHETKELCCKLGKD-DRLLREIISLVHH-NSEASDAGVRAFSA 259 (401)
Q Consensus 183 ~v~~~g~i~~Lv~~L~-~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~-~g~i~~Lv~lL~~-~~~~~~~a~~aL~~ 259 (401)
.+ ..++......|. +....++..||.+|..+++... .+...+... .+.++.|.++.+. ..+.... ++-.
T Consensus 499 ~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~---~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~---vme~ 570 (1010)
T KOG1991|consen 499 NL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQE---QADEKVSAHVPPIMQELLKLSNEVENDDLTN---VMEK 570 (1010)
T ss_pred HH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcch---hhhhhHhhhhhHHHHHHHHHHHhcchhHHHH---HHHH
Confidence 22 235677777777 6677899999999999866554 333434321 2445555555532 2221111 1111
Q ss_pred h-cCCCchh-HHHHh--cCcHHHHHHHHHhhccccchHHHHHHHHHHHHhC------CHhhHHHHH-hCCCcHHHHHHHH
Q 015728 260 L-CSTETNR-KTLVQ--EGAINGLIAYISNALTRERSLAAIAMARIEQLLA------IENSKDALI-NNPNGVYALVKMV 328 (401)
Q Consensus 260 L-s~~~~n~-~~iv~--~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~------~~~~~~~~~-~~~g~i~~Lv~~l 328 (401)
+ +...+.- .-.++ ...+...++++.+..+.++.....+++++..|-. .-+++..+. .-+..+-..+..+
T Consensus 571 iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~i 650 (1010)
T KOG1991|consen 571 IVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFI 650 (1010)
T ss_pred HHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 1 1112211 11111 2245556666653111222233333333333222 222332221 1123455555556
Q ss_pred HhcCChhHHHHHHHHHHHHhcCCHH
Q 015728 329 FRVSDHEGSENAINSLMMICCDSLQ 353 (401)
Q Consensus 329 ~~~~~~~~~~~a~~~L~~l~~~~~~ 353 (401)
++..-...-+.+..++.++....++
T Consensus 651 L~~~i~dfyeE~~ei~~~~t~~~~~ 675 (1010)
T KOG1991|consen 651 LKNDITDFYEELLEIVSSLTFLSKE 675 (1010)
T ss_pred HHHhhHHHHHHHHHHHhhhhhhhcc
Confidence 6654446666677777777665543
No 279
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=85.58 E-value=0.25 Score=53.94 Aligned_cols=46 Identities=24% Similarity=0.392 Sum_probs=38.7
Q ss_pred CCcccccccccccC-CceEcCccccccHHhHHHHHHcCCCCCCCCccc
Q 015728 10 PHLFRCPISLDLFT-DPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQT 56 (401)
Q Consensus 10 ~~~~~C~iC~~~~~-~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~ 56 (401)
-..+.|+||.++++ .-....|||.||..|...|.. .+..||.|...
T Consensus 1151 ~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~-~~s~~~~~ksi 1197 (1394)
T KOG0298|consen 1151 SGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLY-ASSRCPICKSI 1197 (1394)
T ss_pred hcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHH-HhccCcchhhh
Confidence 35679999999999 566788999999999999988 56679999743
No 280
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.44 E-value=39 Score=37.44 Aligned_cols=183 Identities=16% Similarity=0.154 Sum_probs=97.4
Q ss_pred cCCHHHHHHHHHHHHHHHhcccchhhhhhhhccc-hHHHHHHHHHccC-CchhHHHHHHHHHHhcCCCc-hhHHHHhcCc
Q 015728 199 HGSCSIKKRLCHLVEVIISSSHETKELCCKLGKD-DRLLREIISLVHH-NSEASDAGVRAFSALCSTET-NRKTLVQEGA 275 (401)
Q Consensus 199 ~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~-~g~i~~Lv~lL~~-~~~~~~~a~~aL~~Ls~~~~-n~~~iv~~G~ 275 (401)
+.+..+|..+-.+|..+ +... ......... ..+-..|.+-++. +..++...+.+|..|-...+ .-..++.. .
T Consensus 665 ~~~~~vQkK~yrlL~~l-~~~~---s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k-~ 739 (1176)
T KOG1248|consen 665 SSSTKVQKKAYRLLEEL-SSSP---SGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPK-L 739 (1176)
T ss_pred cccHHHHHHHHHHHHHH-hcCC---chhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHH-H
Confidence 44778899999999998 5442 111111110 1222334444432 33467777777776653222 22223333 3
Q ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCC------cHHHHHHHHHhc--CChhHHHHHHHHHHHH
Q 015728 276 INGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPN------GVYALVKMVFRV--SDHEGSENAINSLMMI 347 (401)
Q Consensus 276 v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g------~i~~Lv~~l~~~--~~~~~~~~a~~~L~~l 347 (401)
||-++=.+. .-+...++.|...|..++. .....+.| .|..++..|... ++ .+...+.-|..+
T Consensus 740 I~EvIL~~K---e~n~~aR~~Af~lL~~i~~-----i~~~~d~g~e~~~~~lnefl~~Isagl~gd--~~~~~as~Ivai 809 (1176)
T KOG1248|consen 740 IPEVILSLK---EVNVKARRNAFALLVFIGA-----IQSSLDDGNEPASAILNEFLSIISAGLVGD--STRVVASDIVAI 809 (1176)
T ss_pred HHHHHHhcc---cccHHHHhhHHHHHHHHHH-----HHhhhcccccchHHHHHHHHHHHHhhhccc--HHHHHHHHHHHH
Confidence 333333335 5677889999999998874 11111222 566666643222 22 222222213333
Q ss_pred hcCCHHHHHHHHHcCcHHHHHH----HhhcCCCHHHHHHHHHHHHHHHHhhHHhh
Q 015728 348 CCDSLQAREEAICAGVLTQLLL----LLQSQCSNRTKTKARMLLKLLRSKWAEEL 398 (401)
Q Consensus 348 ~~~~~~~~~~~~~~g~v~~L~~----ll~~~~~~~~~~~A~~~L~~l~~~~~e~~ 398 (401)
..--.+. ....+.+.+..+++ .+.++ +++.++.|...++.+...+||+.
T Consensus 810 ~~il~e~-~~~ld~~~l~~li~~V~~~L~s~-sreI~kaAI~fikvlv~~~pe~~ 862 (1176)
T KOG1248|consen 810 THILQEF-KNILDDETLEKLISMVCLYLASN-SREIAKAAIGFIKVLVYKFPEEC 862 (1176)
T ss_pred HHHHHHH-hccccHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHcCCHHH
Confidence 2211121 23444444444444 45555 99999999999999998888874
No 281
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=85.38 E-value=2.1 Score=43.17 Aligned_cols=68 Identities=10% Similarity=0.211 Sum_probs=41.6
Q ss_pred cCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCC
Q 015728 273 EGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDS 351 (401)
Q Consensus 273 ~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~ 351 (401)
.|+|..|++.-.+ +++++++..|+-+|...|- .+...++..|++|..+.+..++-..+-+|.-.|.+.
T Consensus 550 ~~vv~~lLh~avs--D~nDDVrRAAViAlGfvc~---------~D~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~ 617 (926)
T COG5116 550 LGVVSTLLHYAVS--DGNDDVRRAAVIALGFVCC---------DDRDLLVGTVELLSESHNFHVRAGVAVALGIACAGT 617 (926)
T ss_pred chhHhhhheeecc--cCchHHHHHHHHheeeeEe---------cCcchhhHHHHHhhhccchhhhhhhHHHhhhhhcCC
Confidence 4566666666332 6777888888888877764 355566667775544445555555555555555544
No 282
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=85.15 E-value=0.67 Score=43.37 Aligned_cols=48 Identities=15% Similarity=0.144 Sum_probs=38.4
Q ss_pred CCcccccccccccCCceEcCccccccHHhHHHHHHc-CCCCCCCCcccC
Q 015728 10 PHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAA-GNLTCPVTMQTL 57 (401)
Q Consensus 10 ~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~-~~~~CP~c~~~~ 57 (401)
+++..|-||-+-.+.--.+||+|..|.-|-.+...- ..+.||.|+..-
T Consensus 59 Een~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 59 EENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred cccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 456789999998888778999999999998765432 467899998653
No 283
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=84.57 E-value=6.8 Score=36.18 Aligned_cols=136 Identities=15% Similarity=0.137 Sum_probs=84.8
Q ss_pred chhHHHHHHHHHHhcCCCchhHHHHhcC--cHHHHHHHHHhhccc---cchHHHHHHHHHHHHhCCHhhHHHHHhCC---
Q 015728 247 SEASDAGVRAFSALCSTETNRKTLVQEG--AINGLIAYISNALTR---ERSLAAIAMARIEQLLAIENSKDALINNP--- 318 (401)
Q Consensus 247 ~~~~~~a~~aL~~Ls~~~~n~~~iv~~G--~v~~Lv~lL~~~~~~---~~~~~~~a~~~L~~La~~~~~~~~~~~~~--- 318 (401)
...+--+++++.|+..++..+..+.+.. .|...+..+.. +. +..++..++.++.|++..-..... ..+
T Consensus 124 ~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~--~~~~~~ 199 (268)
T PF08324_consen 124 PANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLS--SLLDSNKNVRIALATLLLNLSVLLHKNRS--DEEWQS 199 (268)
T ss_dssp HHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCT--TS-HHHHHHHHHHHHHHHHHHHHHHHCTS---CCHHH
T ss_pred HHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhh--ccccccHHHHHHHHHHHHHHHHHHHhcCC--ChHHHH
Confidence 4488889999999999999999888643 33333333331 22 567777788888888852111100 011
Q ss_pred CcHHHHHHHHHh-cCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHH
Q 015728 319 NGVYALVKMVFR-VSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARML 386 (401)
Q Consensus 319 g~i~~Lv~~l~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~ 386 (401)
..+..+++.+.. ..++++.-.++.+|.+|...++.........|+-..+-.....+..++.++.+..+
T Consensus 200 ~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~ei 268 (268)
T PF08324_consen 200 ELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVAAEI 268 (268)
T ss_dssp HHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHhccC
Confidence 123344442222 25778888899999999987766654444456666665555555577888777643
No 284
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=84.31 E-value=0.99 Score=40.75 Aligned_cols=45 Identities=36% Similarity=0.459 Sum_probs=37.1
Q ss_pred cccccccccccCCceEc-CccccccHHhHHHHHHc-CCCCCCCCccc
Q 015728 12 LFRCPISLDLFTDPVTL-CTGQTYDRSSIEKWLAA-GNLTCPVTMQT 56 (401)
Q Consensus 12 ~~~C~iC~~~~~~Pv~~-~Cgh~fc~~Ci~~~~~~-~~~~CP~c~~~ 56 (401)
.++||+....+..|+.- .|||.|.+.-+..+... ....||+-+.+
T Consensus 176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE 222 (262)
T ss_pred cccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence 57999999999999974 79999999999998774 24569985554
No 285
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=83.92 E-value=55 Score=34.45 Aligned_cols=189 Identities=14% Similarity=0.128 Sum_probs=105.7
Q ss_pred CCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHH-HccCCchhHHHHHHHHHHhcCCCc
Q 015728 187 ESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIIS-LVHHNSEASDAGVRAFSALCSTET 265 (401)
Q Consensus 187 ~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~-lL~~~~~~~~~a~~aL~~Ls~~~~ 265 (401)
.|.+..+++-..+.+..+|-+...+|..+ ..... +.-..+. .+++..|.. +.+..+.++..|+.+|..+=.++.
T Consensus 84 ~~~f~hlLRg~Eskdk~VRfrvlqila~l-~d~~~--eidd~vf--n~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~ 158 (892)
T KOG2025|consen 84 AGTFYHLLRGTESKDKKVRFRVLQILALL-SDENA--EIDDDVF--NKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPK 158 (892)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHH-hcccc--ccCHHHH--HHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCC
Confidence 46677777777888889999999998888 53110 1111111 244444443 334556699999999999875433
Q ss_pred hhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCC----CcHHHHHHHH-HhcCCh--hHHH
Q 015728 266 NRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNP----NGVYALVKMV-FRVSDH--EGSE 338 (401)
Q Consensus 266 n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~----g~i~~Lv~~l-~~~~~~--~~~~ 338 (401)
+- +..++..++.++++ +++.+++..|+ .+++-++..+-.+++.+ |++..++..- +..-+. ...+
T Consensus 159 de----e~~v~n~l~~liqn--DpS~EVRRaaL---snI~vdnsTlp~IveRarDV~~anRrlvY~r~lpkid~r~lsi~ 229 (892)
T KOG2025|consen 159 DE----ECPVVNLLKDLIQN--DPSDEVRRAAL---SNISVDNSTLPCIVERARDVSGANRRLVYERCLPKIDLRSLSID 229 (892)
T ss_pred CC----cccHHHHHHHHHhc--CCcHHHHHHHH---HhhccCcccchhHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHH
Confidence 21 23467889999997 78888877655 56666665555444333 3444443311 000000 0111
Q ss_pred HHHHHH-HHHhcCCHHHHHHHH----H------cCcHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 015728 339 NAINSL-MMICCDSLQAREEAI----C------AGVLTQLLLLLQSQCSNRTKTKARMLLKL 389 (401)
Q Consensus 339 ~a~~~L-~~l~~~~~~~~~~~~----~------~g~v~~L~~ll~~~~~~~~~~~A~~~L~~ 389 (401)
.-+..| |.|-..+..++..+. . .|-+.-|++-+....+..++.+|..+|-.
T Consensus 230 krv~LlewgLnDRe~sVk~A~~d~il~~Wl~~~dgni~ElL~~ldvsnss~vavk~lealf~ 291 (892)
T KOG2025|consen 230 KRVLLLEWGLNDREFSVKGALVDAILSGWLRFSDGNILELLERLDVSNSSEVAVKALEALFS 291 (892)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhccccHHHHHHHhccccchHHHHHHHHHHHH
Confidence 112222 333221112222221 2 56666677777666566777777776665
No 286
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=83.60 E-value=27 Score=31.33 Aligned_cols=174 Identities=13% Similarity=0.113 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc---cCC--ch-hHHHHHHHHHHhcCCCc--hhHHHHhcCcH
Q 015728 205 KKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV---HHN--SE-ASDAGVRAFSALCSTET--NRKTLVQEGAI 276 (401)
Q Consensus 205 ~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL---~~~--~~-~~~~a~~aL~~Ls~~~~--n~~~iv~~G~v 276 (401)
..+|...|..+ ++.. +.|..+.++ .+=-.|-..| +.+ .+ .+..++.++..|-.+++ ..+.+..-.+|
T Consensus 117 vcnaL~lLQcl-aShP---etk~~Fl~A-hiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeiv 191 (315)
T COG5209 117 VCNALNLLQCL-ASHP---ETKKVFLDA-HIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIV 191 (315)
T ss_pred HHHHHHHHHHH-hcCc---chheeeeec-ccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHH
Confidence 34666666666 6555 778877765 3212233333 222 23 89999999999997666 46667788899
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCC-------CcHHHHHHHHHhcCChhHHHHHHHHHHHHhc
Q 015728 277 NGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNP-------NGVYALVKMVFRVSDHEGSENAINSLMMICC 349 (401)
Q Consensus 277 ~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~-------g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~ 349 (401)
|.+++++. .+++-.+..|+..+..+-.++.|-.-+.... .....++.-+...+..+.-+.++++-..||.
T Consensus 192 PLcLrIme---~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd 268 (315)
T COG5209 192 PLCLRIME---LGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSD 268 (315)
T ss_pred HHHHHHHH---hhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecC
Confidence 99999999 5666566666666665555555443332111 1223333333444566788889999988886
Q ss_pred CCHHHHHHHHH----cCcHHHHHH-HhhcCCCHHHHHHHHHHHHHH
Q 015728 350 DSLQAREEAIC----AGVLTQLLL-LLQSQCSNRTKTKARMLLKLL 390 (401)
Q Consensus 350 ~~~~~~~~~~~----~g~v~~L~~-ll~~~~~~~~~~~A~~~L~~l 390 (401)
+ ++.| +++. .|....-.. ++.+ +..+|+.-+.++-.+
T Consensus 269 ~-p~aR-~lL~~~lP~~Lrd~tfs~vl~d--D~~sk~ClAqll~~l 310 (315)
T COG5209 269 K-PHAR-ALLSSKLPDGLRDDTFSLVLAD--DGGSKECLAQLLTFL 310 (315)
T ss_pred C-HhHH-HHHhccCCccccccHHHHHHHh--cCChHHHHHHHHHHH
Confidence 5 6676 4444 333333222 3333 334555555554443
No 287
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=83.59 E-value=1.2 Score=32.26 Aligned_cols=48 Identities=19% Similarity=0.106 Sum_probs=21.8
Q ss_pred cccccccccccC-----CceEc--CccccccHHhHHHHHHcCCCCCCCCcccCCC
Q 015728 12 LFRCPISLDLFT-----DPVTL--CTGQTYDRSSIEKWLAAGNLTCPVTMQTLHD 59 (401)
Q Consensus 12 ~~~C~iC~~~~~-----~Pv~~--~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~ 59 (401)
.-.|.||.+-.- ++... .|+--.|+.|++--.+.+...||.|+..+..
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B---
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccc
Confidence 457999998542 34443 4888889999987777788999999876653
No 288
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=83.53 E-value=0.51 Score=43.49 Aligned_cols=43 Identities=28% Similarity=0.584 Sum_probs=33.1
Q ss_pred cccccccccccC----CceEcCccccccHHhHHHHHHcCCCCCCCCcc
Q 015728 12 LFRCPISLDLFT----DPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQ 55 (401)
Q Consensus 12 ~~~C~iC~~~~~----~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~ 55 (401)
.+-||||.+.+. .|..++|||+.-..|+......+ .+||.|.+
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccC-CCCCcccc
Confidence 345999999664 35557999988778887776656 99999966
No 289
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=82.45 E-value=90 Score=35.00 Aligned_cols=189 Identities=14% Similarity=0.147 Sum_probs=114.5
Q ss_pred hHHHHHHhhc-CCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHccC-CchhHHHHHHHHHHhcC-----
Q 015728 190 MESFIVLFEH-GSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHH-NSEASDAGVRAFSALCS----- 262 (401)
Q Consensus 190 i~~Lv~~L~~-~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~a~~aL~~Ls~----- 262 (401)
++.+...+++ ...+.|.+|...|..+ |..-. ++++- .-++|-+|.++.+ ...++-.|+.+|..+-.
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~l-S~~i~-de~~L-----DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~ 496 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQEL-STYID-DEVKL-----DRVLPYFVHLLMDSEADVRATALETLTELLALVRDI 496 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHH-hhhcc-hHHHH-----hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCC
Confidence 4444455544 2567889999999999 66431 13222 3578999999954 55688888888887542
Q ss_pred CCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhh------------------------------HH
Q 015728 263 TETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENS------------------------------KD 312 (401)
Q Consensus 263 ~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~------------------------------~~ 312 (401)
.+.+...+.|- .+|.|-+++.+ +....++..-+..|..||...-. ..
T Consensus 497 ~~~daniF~eY-lfP~L~~l~~d--~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~ 573 (1431)
T KOG1240|consen 497 PPSDANIFPEY-LFPHLNHLLND--SSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQ 573 (1431)
T ss_pred CcccchhhHhh-hhhhhHhhhcc--CccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHH
Confidence 33345555554 78888888873 24445555555556666642111 11
Q ss_pred HHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcC---------------------CHHHHHHHH------------
Q 015728 313 ALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCD---------------------SLQAREEAI------------ 359 (401)
Q Consensus 313 ~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~---------------------~~~~~~~~~------------ 359 (401)
++. ..|..+|..++.++++.++..-+..|.-||.- +...|-.+.
T Consensus 574 ~L~---~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~ 650 (1431)
T KOG1240|consen 574 ALH---HTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGW 650 (1431)
T ss_pred HHH---HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEee
Confidence 111 13555555566666667777666666665521 112343333
Q ss_pred ---HcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728 360 ---CAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS 392 (401)
Q Consensus 360 ---~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~ 392 (401)
+++.+|.|.+=+.++ .+.+-.+|...|..|.+
T Consensus 651 rs~seyllPLl~Q~ltD~-EE~Viv~aL~~ls~Lik 685 (1431)
T KOG1240|consen 651 RSVSEYLLPLLQQGLTDG-EEAVIVSALGSLSILIK 685 (1431)
T ss_pred eeHHHHHHHHHHHhccCc-chhhHHHHHHHHHHHHH
Confidence 355566666666666 88899999988888876
No 290
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=82.12 E-value=11 Score=31.42 Aligned_cols=74 Identities=14% Similarity=0.098 Sum_probs=58.1
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHHhcCC-HHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhh
Q 015728 320 GVYALVKMVFRVSDHEGSENAINSLMMICCDS-LQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKW 394 (401)
Q Consensus 320 ~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~ 394 (401)
++..|.+. ++++++.++-.|+.+|-.+..+. .....++...+.+..|+.++.....+.+|+++..++...+..+
T Consensus 42 a~ral~kr-l~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 116 (142)
T cd03569 42 AMRALKKR-LLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAF 116 (142)
T ss_pred HHHHHHHH-HcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHh
Confidence 45566665 45678889999999999998884 4678888899999999999976557789988887777655533
No 291
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=81.68 E-value=16 Score=40.36 Aligned_cols=140 Identities=14% Similarity=0.120 Sum_probs=100.0
Q ss_pred HHHHHHHHcc-----CCchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHh
Q 015728 235 LLREIISLVH-----HNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIEN 309 (401)
Q Consensus 235 ~i~~Lv~lL~-----~~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~ 309 (401)
..|.++.+.+ ++++.+.+|.-||..+..-... +- ..-.|.|+..|.. ++++.++-+++.++..|+..-.
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~---fc-es~l~llftimek--sp~p~IRsN~VvalgDlav~fp 993 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAE---FC-ESHLPLLFTIMEK--SPSPRIRSNLVVALGDLAVRFP 993 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHH---HH-HHHHHHHHHHHhc--CCCceeeecchheccchhhhcc
Confidence 4456666652 3567999999999987753321 11 2367888999986 6788899999999998885322
Q ss_pred hHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 015728 310 SKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKL 389 (401)
Q Consensus 310 ~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~ 389 (401)
+-..- .-+.|.. .+++.++.+++.|+.+|..|--++ .+.-.|-+..+...+.++ +++.+..|....+.
T Consensus 994 nlie~-----~T~~Ly~-rL~D~~~~vRkta~lvlshLILnd-----miKVKGql~eMA~cl~D~-~~~IsdlAk~FF~E 1061 (1251)
T KOG0414|consen 994 NLIEP-----WTEHLYR-RLRDESPSVRKTALLVLSHLILND-----MIKVKGQLSEMALCLEDP-NAEISDLAKSFFKE 1061 (1251)
T ss_pred cccch-----hhHHHHH-HhcCccHHHHHHHHHHHHHHHHhh-----hhHhcccHHHHHHHhcCC-cHHHHHHHHHHHHH
Confidence 22111 1234555 467778899999999999987653 344578888888888777 99999999977777
Q ss_pred HHH
Q 015728 390 LRS 392 (401)
Q Consensus 390 l~~ 392 (401)
|+.
T Consensus 1062 ls~ 1064 (1251)
T KOG0414|consen 1062 LSS 1064 (1251)
T ss_pred hhh
Confidence 765
No 292
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=81.46 E-value=59 Score=32.22 Aligned_cols=129 Identities=17% Similarity=0.257 Sum_probs=81.4
Q ss_pred HHHHHHHHHccCCchhHHHHHHHHHHhcCC-Cc--------h-----hHHHHhcCcHHHHHHHHHhhccccchHHHHHHH
Q 015728 234 RLLREIISLVHHNSEASDAGVRAFSALCST-ET--------N-----RKTLVQEGAINGLIAYISNALTRERSLAAIAMA 299 (401)
Q Consensus 234 g~i~~Lv~lL~~~~~~~~~a~~aL~~Ls~~-~~--------n-----~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~ 299 (401)
..+..|+.+|++ .+....|+.++.-|..+ ++ + |.++.. -.+|.|++-.. ..+...+.+-+.
T Consensus 271 ~~~~~L~~lL~~-~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~-~~~p~L~~~~~---~~~~~~k~~yL~ 345 (415)
T PF12460_consen 271 ELLDKLLELLSS-PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFT-QVLPKLLEGFK---EADDEIKSNYLT 345 (415)
T ss_pred HHHHHHHHHhCC-hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHH-HHHHHHHHHHh---hcChhhHHHHHH
Confidence 355677777754 45678888888888766 32 2 333332 36777777777 445557888888
Q ss_pred HHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHH
Q 015728 300 RIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLL 369 (401)
Q Consensus 300 ~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ 369 (401)
+|.++..+--.....-.-+..+|-|++. +...+...+..++.+|..+....++.... --...|+.|+.
T Consensus 346 ALs~ll~~vP~~vl~~~l~~LlPLLlqs-L~~~~~~v~~s~L~tL~~~l~~~~~~i~~-hl~sLI~~LL~ 413 (415)
T PF12460_consen 346 ALSHLLKNVPKSVLLPELPTLLPLLLQS-LSLPDADVLLSSLETLKMILEEAPELISE-HLSSLIPRLLK 413 (415)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHcCHHHHHH-HHHHHHHHHHh
Confidence 9988887533222222223467777774 56677778999999999998876544433 12244555543
No 293
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=81.17 E-value=22 Score=32.69 Aligned_cols=128 Identities=13% Similarity=0.149 Sum_probs=75.9
Q ss_pred CCCCCChhhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHH
Q 015728 86 PNYLATIDSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEES 165 (401)
Q Consensus 86 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a 165 (401)
|.||.+...+..+...|-..+-..-.+..|...||+.--+. .|-.|+.-+..++ .-.+-++
T Consensus 147 Pa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~Ee-----------aI~al~~~l~~~S--------alfrhEv 207 (289)
T KOG0567|consen 147 PAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTEE-----------AINALIDGLADDS--------ALFRHEV 207 (289)
T ss_pred CCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcHH-----------HHHHHHHhcccch--------HHHHHHH
Confidence 44554444555555555444445556667777776653221 2334444444443 3477777
Q ss_pred HHHHHHhhcCCchhhhhhcccCCchHHHHHHhhc--CCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc
Q 015728 166 LSCVQKLLLVGETESLNLLNEESKMESFIVLFEH--GSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV 243 (401)
Q Consensus 166 ~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~--~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL 243 (401)
+. +++.|- ..-+|+.|.+.|.. .++-+|..|+.+|..+ +.. ..++.|...+
T Consensus 208 Af-VfGQl~-----------s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaI-a~e--------------~~~~vL~e~~ 260 (289)
T KOG0567|consen 208 AF-VFGQLQ-----------SPAAIPSLIKVLLDETEHPMVRHEAAEALGAI-ADE--------------DCVEVLKEYL 260 (289)
T ss_pred HH-HHhhcc-----------chhhhHHHHHHHHhhhcchHHHHHHHHHHHhh-cCH--------------HHHHHHHHHc
Confidence 77 776543 33468888888854 4678999999999999 532 4567777777
Q ss_pred cCCch-hHHHHHHHHHH
Q 015728 244 HHNSE-ASDAGVRAFSA 259 (401)
Q Consensus 244 ~~~~~-~~~~a~~aL~~ 259 (401)
.+..+ +++.+..+|-.
T Consensus 261 ~D~~~vv~esc~valdm 277 (289)
T KOG0567|consen 261 GDEERVVRESCEVALDM 277 (289)
T ss_pred CCcHHHHHHHHHHHHHH
Confidence 54444 55555555443
No 294
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=81.10 E-value=13 Score=39.94 Aligned_cols=146 Identities=14% Similarity=0.142 Sum_probs=90.0
Q ss_pred cCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcc--cCCchHHHHHHhhcCCHHHHHHHHHHHH
Q 015728 136 LGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLN--EESKMESFIVLFEHGSCSIKKRLCHLVE 213 (401)
Q Consensus 136 ~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~--~~g~i~~Lv~~L~~~~~~~~~~aa~~L~ 213 (401)
...+|.|++........ .....-.++.-++.+ -+ ++++. -+..+|.|++.|+-++..+|..+..++.
T Consensus 866 ~~ivP~l~~~~~t~~~~-----~K~~yl~~LshVl~~----vP--~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~ 934 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGS-----QKHNYLEALSHVLTN----VP--KQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIP 934 (1030)
T ss_pred HhhHHHHHHHhccCCcc-----chhHHHHHHHHHHhc----CC--HHhhccchhhHHHHHHHhcCCCccchhhhHhhhhh
Confidence 46789999988743322 011223333322222 21 23331 1346788888898889999888887777
Q ss_pred HHHhcccchhhhhhhhccchHHHHHHHHHccC-C---chhHHHHHHHHHHhcC-CCchhHHHHhcCcHHHHHHHHHhhcc
Q 015728 214 VIISSSHETKELCCKLGKDDRLLREIISLVHH-N---SEASDAGVRAFSALCS-TETNRKTLVQEGAINGLIAYISNALT 288 (401)
Q Consensus 214 ~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~-~---~~~~~~a~~aL~~Ls~-~~~n~~~iv~~G~v~~Lv~lL~~~~~ 288 (401)
-+.-... ..-..-+ ..++|.+..+=++ + ..++..|+.+|..|.. .|.+.-.--+-.++..|++.|. +
T Consensus 935 ~~l~~~~---tL~t~~~--~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~Ld---D 1006 (1030)
T KOG1967|consen 935 MLLTESE---TLQTEHL--STLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILD---D 1006 (1030)
T ss_pred HHHHhcc---ccchHHH--hHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccC---c
Confidence 6622221 1111111 1355665555532 2 2499999999999997 6766555566678899999999 6
Q ss_pred ccchHHHHHHHH
Q 015728 289 RERSLAAIAMAR 300 (401)
Q Consensus 289 ~~~~~~~~a~~~ 300 (401)
+.+-+++.|+.+
T Consensus 1007 kKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 1007 KKRLVRKEAVDT 1018 (1030)
T ss_pred HHHHHHHHHHHH
Confidence 777788887764
No 295
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=81.00 E-value=58 Score=31.89 Aligned_cols=223 Identities=15% Similarity=0.168 Sum_probs=126.9
Q ss_pred HHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCc---hhhhhhcccCCch
Q 015728 114 QIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGE---TESLNLLNEESKM 190 (401)
Q Consensus 114 ~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~---~~~~~~v~~~g~i 190 (401)
.|++.|..+....+..-..+.+.||+..++..|...... +.+. . .+-..+. .+.+......-.|
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~--------~~~~--~---~~~~~~~~~~~~~~~~~~~~~~i 69 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDF--------ALEE--N---KNEEAGSGIPPEYKESSVDGYSI 69 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHH--------HHhc--c---cccCCCCCCCCCccccccccccc
Confidence 477888888888877788888999999999998643211 1110 0 0100000 0001001010001
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHhcccc-hhhhhhhhccchHHHHHHHHHccC----CchhHHHHHHHHHHhcC-CC
Q 015728 191 ESFIVLFEHGSCSIKKRLCHLVEVIISSSHE-TKELCCKLGKDDRLLREIISLVHH----NSEASDAGVRAFSALCS-TE 264 (401)
Q Consensus 191 ~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~-~~~~~~~i~~~~g~i~~Lv~lL~~----~~~~~~~a~~aL~~Ls~-~~ 264 (401)
+.- ..........++..++..... .+..+..+ +...++..|..+++. ++.+.-.|+.++..+-. .|
T Consensus 70 ~~~-------r~~llK~lLk~l~~~~~~~~~~~~~lrnl~-D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~neP 141 (379)
T PF06025_consen 70 SYQ-------RQQLLKSLLKFLSHAMQHSGGFGDRLRNLI-DSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEP 141 (379)
T ss_pred CHH-------HHHHHHHHHHHHHHHhccCCCccccccccc-chhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCC
Confidence 000 000111112233333120111 11333333 322445666666632 35688889999998874 55
Q ss_pred chhHHHHhcCcHHHHHHHHH-hhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCC-------hhH
Q 015728 265 TNRKTLVQEGAINGLIAYIS-NALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSD-------HEG 336 (401)
Q Consensus 265 ~n~~~iv~~G~v~~Lv~lL~-~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~-------~~~ 336 (401)
..-..+.++|.++.+++-+. ....++.++....-.+|..||-+..|..++. +.+.++.+++ ++.+.+ .+.
T Consensus 142 T~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~-~~~~l~~~f~-if~s~~~~~~l~~~d~ 219 (379)
T PF06025_consen 142 TSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVK-SSNPLDKLFE-IFTSPDYVKALRRRDT 219 (379)
T ss_pred chhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHH-hcChHHHHHH-HhCCHHHHHHhcccch
Confidence 56777789999999999987 3223456777777788999999999999996 7899999999 443321 012
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHH
Q 015728 337 SENAINSLMMICCDSLQAREEAI 359 (401)
Q Consensus 337 ~~~a~~~L~~l~~~~~~~~~~~~ 359 (401)
...--..+-.|.+|.+..|..++
T Consensus 220 a~~lG~~~DEL~RH~p~Lk~~i~ 242 (379)
T PF06025_consen 220 ASNLGNSFDELMRHHPSLKPDII 242 (379)
T ss_pred HHHHHHHHHHHHccCHHHHHHHH
Confidence 22233345567777777664444
No 296
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=80.63 E-value=24 Score=37.96 Aligned_cols=148 Identities=14% Similarity=0.126 Sum_probs=92.3
Q ss_pred CchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccc-hHHHHHHHHHcc-CCchhHHHHHHHHHHhcC-CC
Q 015728 188 SKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKD-DRLLREIISLVH-HNSEASDAGVRAFSALCS-TE 264 (401)
Q Consensus 188 g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~-~g~i~~Lv~lL~-~~~~~~~~a~~aL~~Ls~-~~ 264 (401)
..+|.+++...+.+...|.+-..+|.++....+ ++.+... ...+|-|+.-|+ .|..++..+..+|..+-. .+
T Consensus 867 ~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP-----~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~ 941 (1030)
T KOG1967|consen 867 DIVPILVSKFETAPGSQKHNYLEALSHVLTNVP-----KQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESE 941 (1030)
T ss_pred hhHHHHHHHhccCCccchhHHHHHHHHHHhcCC-----HHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcc
Confidence 467888887776666677766677777644333 3444432 234455555554 466677888888776553 33
Q ss_pred chhHHHHhcCcHHHHHHHHHhhccc-cchHHHHHHHHHHHHhC-CHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHH
Q 015728 265 TNRKTLVQEGAINGLIAYISNALTR-ERSLAAIAMARIEQLLA-IENSKDALINNPNGVYALVKMVFRVSDHEGSENAIN 342 (401)
Q Consensus 265 ~n~~~iv~~G~v~~Lv~lL~~~~~~-~~~~~~~a~~~L~~La~-~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~ 342 (401)
.-...=++ -.||.++.+=++. +. ...+++.|+..|..|.+ .|..+..-. ...++..|++ .+.+....+++.|++
T Consensus 942 tL~t~~~~-Tlvp~lLsls~~~-~n~~~~VR~~ALqcL~aL~~~~P~~~l~~f-r~~Vl~al~k-~LdDkKRlVR~eAv~ 1017 (1030)
T KOG1967|consen 942 TLQTEHLS-TLVPYLLSLSSDN-DNNMMVVREDALQCLNALTRRLPTKSLLSF-RPLVLRALIK-ILDDKKRLVRKEAVD 1017 (1030)
T ss_pred ccchHHHh-HHHHHHHhcCCCC-CcchhHHHHHHHHHHHHHhccCCCcccccc-cHHHHHHhhh-ccCcHHHHHHHHHHH
Confidence 22222121 2677777666531 11 25789999999999998 666666554 5677888888 676666567777776
Q ss_pred HH
Q 015728 343 SL 344 (401)
Q Consensus 343 ~L 344 (401)
+=
T Consensus 1018 tR 1019 (1030)
T KOG1967|consen 1018 TR 1019 (1030)
T ss_pred Hh
Confidence 53
No 297
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=80.24 E-value=2.2 Score=35.68 Aligned_cols=47 Identities=19% Similarity=0.311 Sum_probs=33.8
Q ss_pred CcccccccccccCCceEcCccc--c---ccHHhHHHHHHc-CCCCCCCCcccCC
Q 015728 11 HLFRCPISLDLFTDPVTLCTGQ--T---YDRSSIEKWLAA-GNLTCPVTMQTLH 58 (401)
Q Consensus 11 ~~~~C~iC~~~~~~Pv~~~Cgh--~---fc~~Ci~~~~~~-~~~~CP~c~~~~~ 58 (401)
.+..|-||.+--. +...||.. + ....|+++|... +...|+.|+.++.
T Consensus 7 ~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 7 MDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 3567999998754 33445543 2 268999999986 4678999988764
No 298
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=79.77 E-value=9.7 Score=31.44 Aligned_cols=71 Identities=20% Similarity=0.155 Sum_probs=53.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHhcCCH-HHHHHHHHcCcHHHHHHHhhcCCCHH---HHHHHHHHHHHHHH
Q 015728 321 VYALVKMVFRVSDHEGSENAINSLMMICCDSL-QAREEAICAGVLTQLLLLLQSQCSNR---TKTKARMLLKLLRS 392 (401)
Q Consensus 321 i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~v~~L~~ll~~~~~~~---~~~~A~~~L~~l~~ 392 (401)
+..|-+. +.++++..+..|+.+|-.+..+.+ ..+.++.....+..|..++....... +|+++..++.....
T Consensus 44 ~~~l~kr-l~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 44 ARALRKR-LKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHH-HTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 4456664 456888999999999999998874 67778888888999999887664554 67777766665544
No 299
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.68 E-value=1.7 Score=30.89 Aligned_cols=36 Identities=25% Similarity=0.225 Sum_probs=27.3
Q ss_pred ccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCCcHHH
Q 015728 30 TGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTL 68 (401)
Q Consensus 30 Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~n~~l 68 (401)
--+|||..|.+..+. ..||-|+..+..+.+++-..+
T Consensus 27 fEcTFCadCae~~l~---g~CPnCGGelv~RP~RPaa~L 62 (84)
T COG3813 27 FECTFCADCAENRLH---GLCPNCGGELVARPIRPAAKL 62 (84)
T ss_pred EeeehhHhHHHHhhc---CcCCCCCchhhcCcCChHHHH
Confidence 447899999987665 469999998877666665444
No 300
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=79.27 E-value=62 Score=31.13 Aligned_cols=186 Identities=12% Similarity=0.146 Sum_probs=121.3
Q ss_pred cChHHHHHHHHHHHHHHhcCchhhh-----HHHh--cCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchh
Q 015728 107 ATLETKLQIVQKIHVVLRESPPASN-----CLIQ--LGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETE 179 (401)
Q Consensus 107 ~~~~~~~~a~~~L~~l~~~~~~~r~-----~i~~--~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~ 179 (401)
-+-+.+..+.....++.+.....+. .+.. ...+..|+.--.. +++.-.+-. +|+....++.-
T Consensus 88 L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~----------~dial~~g~-mlRec~k~e~l 156 (335)
T PF08569_consen 88 LDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYEN----------PDIALNCGD-MLRECIKHESL 156 (335)
T ss_dssp S-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGS----------TTTHHHHHH-HHHHHTTSHHH
T ss_pred CCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcC----------ccccchHHH-HHHHHHhhHHH
Confidence 3678889999999999988776654 2222 1223333332222 345566666 88877766544
Q ss_pred hhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhcc-chHHHHHHHHHc-cCCchhHHHHHHHH
Q 015728 180 SLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGK-DDRLLREIISLV-HHNSEASDAGVRAF 257 (401)
Q Consensus 180 ~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~-~~g~i~~Lv~lL-~~~~~~~~~a~~aL 257 (401)
.+-++ ....+..+....+.++=++...|..++..+...... -....+.. ....+.....+| ++++-.+++++..|
T Consensus 157 ~~~iL-~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~--~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL 233 (335)
T PF08569_consen 157 AKIIL-YSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKK--LVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLL 233 (335)
T ss_dssp HHHHH-TSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHH--HHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHH
T ss_pred HHHHh-CcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHH
Confidence 55455 677899999999999999999999999987343320 11222221 124556667788 56788999999999
Q ss_pred HHhcCCCchhHHHHh----cCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHh
Q 015728 258 SALCSTETNRKTLVQ----EGAINGLIAYISNALTRERSLAAIAMARIEQLLAIEN 309 (401)
Q Consensus 258 ~~Ls~~~~n~~~iv~----~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~ 309 (401)
..|-.+..|..-|.. ..-+-.++-+|+ +.+..++-.|..+.-....+|.
T Consensus 234 ~ellldr~n~~vm~~yi~~~~nLkl~M~lL~---d~sk~Iq~eAFhvFKvFVANp~ 286 (335)
T PF08569_consen 234 GELLLDRSNFNVMTRYISSPENLKLMMNLLR---DKSKNIQFEAFHVFKVFVANPN 286 (335)
T ss_dssp HHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT----S-HHHHHHHHHHHHHHHH-SS
T ss_pred HHHHHchhHHHHHHHHHCCHHHHHHHHHHhc---CcchhhhHHHHHHHHHHHhCCC
Confidence 999999998765543 345667777788 6788899999888877665443
No 301
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=79.26 E-value=13 Score=31.01 Aligned_cols=73 Identities=16% Similarity=0.136 Sum_probs=56.8
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCH-HHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHh
Q 015728 320 GVYALVKMVFRVSDHEGSENAINSLMMICCDSL-QAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSK 393 (401)
Q Consensus 320 ~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~ 393 (401)
++..|.+. +.++++.++-.|+.+|-.+..+.+ ....++.....+..|+.++.......+|++...+++..+..
T Consensus 38 a~ral~KR-l~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 38 CLKAIMKR-LNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred HHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 45566665 456788899999999999988865 57778889999999999997754778888877777665543
No 302
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=78.79 E-value=0.099 Score=37.29 Aligned_cols=41 Identities=17% Similarity=0.168 Sum_probs=22.0
Q ss_pred cccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCC
Q 015728 12 LFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLH 58 (401)
Q Consensus 12 ~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~ 58 (401)
++.||.|...|.. .-++.+|..|-.++. ....||.|+.++.
T Consensus 1 e~~CP~C~~~L~~----~~~~~~C~~C~~~~~--~~a~CPdC~~~Le 41 (70)
T PF07191_consen 1 ENTCPKCQQELEW----QGGHYHCEACQKDYK--KEAFCPDCGQPLE 41 (70)
T ss_dssp --B-SSS-SBEEE----ETTEEEETTT--EEE--EEEE-TTT-SB-E
T ss_pred CCcCCCCCCccEE----eCCEEECccccccce--ecccCCCcccHHH
Confidence 3679999886542 227888999976543 2456999988764
No 303
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=78.57 E-value=1.9 Score=29.26 Aligned_cols=38 Identities=18% Similarity=0.440 Sum_probs=23.0
Q ss_pred CcccccccccccCCceEcCccccccHHhHHHHHHc-CCCCCCCCcc
Q 015728 11 HLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAA-GNLTCPVTMQ 55 (401)
Q Consensus 11 ~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~-~~~~CP~c~~ 55 (401)
+.|.||.|.+.+... .++..|....... ....||.|..
T Consensus 1 ~~f~CP~C~~~~~~~-------~L~~H~~~~H~~~~~~v~CPiC~~ 39 (54)
T PF05605_consen 1 DSFTCPYCGKGFSES-------SLVEHCEDEHRSESKNVVCPICSS 39 (54)
T ss_pred CCcCCCCCCCccCHH-------HHHHHHHhHCcCCCCCccCCCchh
Confidence 468999999954421 2334444443332 3577999965
No 304
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=78.52 E-value=0.76 Score=29.93 Aligned_cols=43 Identities=12% Similarity=0.132 Sum_probs=23.0
Q ss_pred cccccccccCCceEcCcc-ccccHHhHHHHHHcCCCCCCCCcccCCC
Q 015728 14 RCPISLDLFTDPVTLCTG-QTYDRSSIEKWLAAGNLTCPVTMQTLHD 59 (401)
Q Consensus 14 ~C~iC~~~~~~Pv~~~Cg-h~fc~~Ci~~~~~~~~~~CP~c~~~~~~ 59 (401)
.|.-|....+. .+.|. |-.|..|+...+. .+..||.|+.++..
T Consensus 4 nCKsCWf~~k~--Li~C~dHYLCl~CLt~ml~-~s~~C~iC~~~LPt 47 (50)
T PF03854_consen 4 NCKSCWFANKG--LIKCSDHYLCLNCLTLMLS-RSDRCPICGKPLPT 47 (50)
T ss_dssp ---SS-S--SS--EEE-SS-EEEHHHHHHT-S-SSSEETTTTEE---
T ss_pred cChhhhhcCCC--eeeecchhHHHHHHHHHhc-cccCCCcccCcCcc
Confidence 45555543332 34555 6669999988776 66789999998764
No 305
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.09 E-value=1.1 Score=47.22 Aligned_cols=37 Identities=14% Similarity=0.269 Sum_probs=29.4
Q ss_pred CCCCccccccccc-ccCCceE-cCccccccHHhHHHHHH
Q 015728 8 TIPHLFRCPISLD-LFTDPVT-LCTGQTYDRSSIEKWLA 44 (401)
Q Consensus 8 ~~~~~~~C~iC~~-~~~~Pv~-~~Cgh~fc~~Ci~~~~~ 44 (401)
.+.+.-.|.+|.. ++..|.. .+|||.|.+.|+.+...
T Consensus 813 v~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 813 VLEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred EecCccchHHhcchhhcCcceeeeccchHHHHHHHHHHH
Confidence 3556678999998 4456765 59999999999998765
No 306
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=78.09 E-value=67 Score=30.88 Aligned_cols=199 Identities=13% Similarity=0.140 Sum_probs=132.4
Q ss_pred cCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchh--hhhhhhccchHHHHHHHHHc-c--CCchhHHHHHHHHHHh
Q 015728 186 EESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETK--ELCCKLGKDDRLLREIISLV-H--HNSEASDAGVRAFSAL 260 (401)
Q Consensus 186 ~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~--~~~~~i~~~~g~i~~Lv~lL-~--~~~~~~~~a~~aL~~L 260 (401)
..+.+..|+..|..-+-+.|..++.+..++......+. .....+... -|-++..| + ++++..-.+...|+..
T Consensus 74 ~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~---~peil~~L~~gy~~~dial~~g~mlRec 150 (335)
T PF08569_consen 74 RSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERH---RPEILDILLRGYENPDIALNCGDMLREC 150 (335)
T ss_dssp HHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT-----THHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred HhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhC---CHHHHHHHHHHhcCccccchHHHHHHHH
Confidence 45778889999998899999999988888833322110 012233332 12333333 3 4566888888999999
Q ss_pred cCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHh-CCHhhHHHHH-hCC-CcHHHHHHHHHhcCChhHH
Q 015728 261 CSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLL-AIENSKDALI-NNP-NGVYALVKMVFRVSDHEGS 337 (401)
Q Consensus 261 s~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La-~~~~~~~~~~-~~~-g~i~~Lv~~l~~~~~~~~~ 337 (401)
..++.-...+.....+-.+.+.+. .++-++...|..++..|- .+..--..+. .+. ..+....+ |+.+++.-.+
T Consensus 151 ~k~e~l~~~iL~~~~f~~ff~~~~---~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~-Ll~s~NYvtk 226 (335)
T PF08569_consen 151 IKHESLAKIILYSECFWKFFKYVQ---LPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNK-LLESSNYVTK 226 (335)
T ss_dssp TTSHHHHHHHHTSGGGGGHHHHTT---SSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHH-HCT-SSHHHH
T ss_pred HhhHHHHHHHhCcHHHHHHHHHhc---CCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH-HccCCCeEee
Confidence 998888888888888888888888 678889999999998754 5554434333 222 24454555 6788888999
Q ss_pred HHHHHHHHHHhcCCHH--HHHHHH-HcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728 338 ENAINSLMMICCDSLQ--AREEAI-CAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS 392 (401)
Q Consensus 338 ~~a~~~L~~l~~~~~~--~~~~~~-~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~ 392 (401)
..++..|..|-.+..+ ....-+ +..-+..++.+|++. +...+-.|-.+++.+--
T Consensus 227 rqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~-sk~Iq~eAFhvFKvFVA 283 (335)
T PF08569_consen 227 RQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDK-SKNIQFEAFHVFKVFVA 283 (335)
T ss_dssp HHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCc-chhhhHHHHHHHHHHHh
Confidence 9999999999765332 222222 344456667777777 89999999999988754
No 307
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=78.02 E-value=1.1e+02 Score=33.91 Aligned_cols=107 Identities=19% Similarity=0.164 Sum_probs=60.0
Q ss_pred chHHHHHHhhcCC-HHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-----cC----CchhHHHHHHHHH
Q 015728 189 KMESFIVLFEHGS-CSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-----HH----NSEASDAGVRAFS 258 (401)
Q Consensus 189 ~i~~Lv~~L~~~~-~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-----~~----~~~~~~~a~~aL~ 258 (401)
.|...++++.-.+ ...=..+..+|..| +... -...... ..++|.++.-| .+ +..++.+|.-++|
T Consensus 380 vi~svid~~~p~e~~~aWHgacLaLAEL-A~rG---lLlps~l--~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~W 453 (1133)
T KOG1943|consen 380 VIGSVIDLFNPAEDDSAWHGACLALAEL-ALRG---LLLPSLL--EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCW 453 (1133)
T ss_pred HHHHHHHhcCcCCchhHHHHHHHHHHHH-HhcC---CcchHHH--HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHH
Confidence 4566666554443 45567888888888 6543 1111111 24556666555 11 2458999999999
Q ss_pred HhcCCCch--hHHHHhcCcHHH-HHHHHHhhccccchHHHHHHHHHHHHh
Q 015728 259 ALCSTETN--RKTLVQEGAING-LIAYISNALTRERSLAAIAMARIEQLL 305 (401)
Q Consensus 259 ~Ls~~~~n--~~~iv~~G~v~~-Lv~lL~~~~~~~~~~~~~a~~~L~~La 305 (401)
.++..-+. -+.+++. ..+. |+..+. +.+...+..|.+++-...
T Consensus 454 Af~Rays~~~l~p~l~~-L~s~LL~~AlF---DrevncRRAAsAAlqE~V 499 (1133)
T KOG1943|consen 454 AFARAYSPSDLKPVLQS-LASALLIVALF---DREVNCRRAASAALQENV 499 (1133)
T ss_pred HHHhcCChhhhhHHHHH-HHHHHHHHHhc---CchhhHhHHHHHHHHHHh
Confidence 99863332 2223332 2222 223334 456677888888776554
No 308
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=77.89 E-value=21 Score=32.06 Aligned_cols=152 Identities=13% Similarity=0.132 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcC-CchhhhhhcccCC
Q 015728 110 ETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLV-GETESLNLLNEES 188 (401)
Q Consensus 110 ~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~-~~~~~~~~v~~~g 188 (401)
.....|+..|+-++++ |+.|..+.++..--.|-.+|...+..+ ...-.+-.+++ ++..|.. ++.+..+.+....
T Consensus 115 nRvcnaL~lLQclaSh-Petk~~Fl~AhiplflypfLntss~~~---~fEyLRltsLG-VIgaLvkNdsq~vi~fLltTe 189 (315)
T COG5209 115 NRVCNALNLLQCLASH-PETKKVFLDAHIPLFLYPFLNTSSSNS---KFEYLRLTSLG-VIGALVKNDSQYVIKFLLTTE 189 (315)
T ss_pred hHHHHHHHHHHHHhcC-cchheeeeecccceeeHhhhhccccCC---ccceeeehHHH-HHHHHHhCCCHHHHHHHHhhh
Confidence 3456777777777765 557888888775444444553322210 01235556666 5554443 3444455555778
Q ss_pred chHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccc-------hHHHHHHHHHc-c-CCchhHHHHHHHHHH
Q 015728 189 KMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKD-------DRLLREIISLV-H-HNSEASDAGVRAFSA 259 (401)
Q Consensus 189 ~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~-------~g~i~~Lv~lL-~-~~~~~~~~a~~aL~~ 259 (401)
.||..+++++.|+.-.|.-|+.++..+ -.++ ..-+.|+.. .-.+..++.-+ + +.....+.+.++-..
T Consensus 190 ivPLcLrIme~gSElSktvaifI~qki-l~dD---vGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlR 265 (315)
T COG5209 190 IVPLCLRIMELGSELSKTVAIFIFQKI-LGDD---VGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLR 265 (315)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHH-hccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHhee
Confidence 899999999999999999999999888 4444 222222211 11223333322 2 344577888888777
Q ss_pred hcCCCchhHHH
Q 015728 260 LCSTETNRKTL 270 (401)
Q Consensus 260 Ls~~~~n~~~i 270 (401)
||..+..|..+
T Consensus 266 Lsd~p~aR~lL 276 (315)
T COG5209 266 LSDKPHARALL 276 (315)
T ss_pred ecCCHhHHHHH
Confidence 77777666554
No 309
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=77.81 E-value=80 Score=34.20 Aligned_cols=183 Identities=8% Similarity=0.038 Sum_probs=106.7
Q ss_pred hhcCCHHHHHHHHHHHHHHHhcccchhhhh-hhhccchHHHHHHHHHcc--CCchhHHHHHHHHHHhcCCCchhHHHHhc
Q 015728 197 FEHGSCSIKKRLCHLVEVIISSSHETKELC-CKLGKDDRLLREIISLVH--HNSEASDAGVRAFSALCSTETNRKTLVQE 273 (401)
Q Consensus 197 L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~-~~i~~~~g~i~~Lv~lL~--~~~~~~~~a~~aL~~Ls~~~~n~~~iv~~ 273 (401)
+.+.+...|..|+.-+....+. .+ ...-...|.+-.+++... .+..+...|+..|-.|+.--..-.+=...
T Consensus 262 ~~s~~WK~R~Eale~l~~~l~e------~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~ 335 (815)
T KOG1820|consen 262 MLSKKWKDRKEALEELVAILEE------AKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAK 335 (815)
T ss_pred hhccchHHHHHHHHHHHHHHhc------cccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHH
Confidence 4456666676666666555232 12 222222356666666663 34457777888888777422211222345
Q ss_pred CcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCH-
Q 015728 274 GAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSL- 352 (401)
Q Consensus 274 G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~- 352 (401)
++.|.+++-+. .....+++.++.++-..+.. +. -...++.... .++.+++..+......|.......+
T Consensus 336 ~v~p~lld~lk---ekk~~l~d~l~~~~d~~~ns--~~-----l~~~~~~I~e-~lk~knp~~k~~~~~~l~r~~~~~~~ 404 (815)
T KOG1820|consen 336 NVFPSLLDRLK---EKKSELRDALLKALDAILNS--TP-----LSKMSEAILE-ALKGKNPQIKGECLLLLDRKLRKLGP 404 (815)
T ss_pred hhcchHHHHhh---hccHHHHHHHHHHHHHHHhc--cc-----HHHHHHHHHH-HhcCCChhhHHHHHHHHHHHHhhcCC
Confidence 68888998888 45566777777766655431 11 1112333444 5778888777776666655443322
Q ss_pred HHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHHh
Q 015728 353 QAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAEE 397 (401)
Q Consensus 353 ~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e~ 397 (401)
.....---.+.++.++....+. ...+|..|..++-.+-++++|+
T Consensus 405 ~~~~~~t~~~l~p~~~~~~~D~-~~~VR~Aa~e~~~~v~k~~Ge~ 448 (815)
T KOG1820|consen 405 KTVEKETVKTLVPHLIKHINDT-DKDVRKAALEAVAAVMKVHGEE 448 (815)
T ss_pred cCcchhhHHHHhHHHhhhccCC-cHHHHHHHHHHHHHHHHHhhHH
Confidence 1222222345556666665443 7889999999999998888876
No 310
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=77.65 E-value=2 Score=29.03 Aligned_cols=30 Identities=30% Similarity=0.557 Sum_probs=24.5
Q ss_pred ccccccccccc--CCceEc--CccccccHHhHHH
Q 015728 12 LFRCPISLDLF--TDPVTL--CTGQTYDRSSIEK 41 (401)
Q Consensus 12 ~~~C~iC~~~~--~~Pv~~--~Cgh~fc~~Ci~~ 41 (401)
.-.|++|.+.| .+.++. .||..|-+.|..+
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 34799999999 677775 4999999999754
No 311
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=77.63 E-value=18 Score=29.48 Aligned_cols=76 Identities=12% Similarity=0.112 Sum_probs=57.7
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHH-HHHHHHHcCcHHHHHHHhhc--CCCHHHHHHHHHHHHHHHHhhHH
Q 015728 320 GVYALVKMVFRVSDHEGSENAINSLMMICCDSLQ-AREEAICAGVLTQLLLLLQS--QCSNRTKTKARMLLKLLRSKWAE 396 (401)
Q Consensus 320 ~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~g~v~~L~~ll~~--~~~~~~~~~A~~~L~~l~~~~~e 396 (401)
++..|-+. ++++++..+-.|+.+|-.+..+.+. ...++.....+..|+.++.. ...+.+|+++..++......++.
T Consensus 38 a~raL~kr-l~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~ 116 (133)
T cd03561 38 AARAIRKK-IKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFGG 116 (133)
T ss_pred HHHHHHHH-HcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 34556664 4567889999999999999988764 66677776888889999865 34678999988888877765543
No 312
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=77.44 E-value=6.2 Score=41.17 Aligned_cols=67 Identities=15% Similarity=0.166 Sum_probs=41.4
Q ss_pred cHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCH
Q 015728 275 AINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSL 352 (401)
Q Consensus 275 ~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~ 352 (401)
+|..|++.-.+ +.+.+++..|+-+|...+. +++...+..|++|..+-++.++-.++.+|.--|.+.+
T Consensus 555 air~lLh~aVs--D~nDDVrRaAVialGFVl~---------~dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG 621 (929)
T KOG2062|consen 555 AIRRLLHVAVS--DVNDDVRRAAVIALGFVLF---------RDPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTG 621 (929)
T ss_pred hHHHhhccccc--ccchHHHHHHHHHheeeEe---------cChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCC
Confidence 34444444222 4556666666666665443 4556677888866555677778888888877676654
No 313
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=77.43 E-value=1.5 Score=42.07 Aligned_cols=27 Identities=22% Similarity=0.507 Sum_probs=21.2
Q ss_pred ccHHhHHHHHHc------------CCCCCCCCcccCCCC
Q 015728 34 YDRSSIEKWLAA------------GNLTCPVTMQTLHDP 60 (401)
Q Consensus 34 fc~~Ci~~~~~~------------~~~~CP~c~~~~~~~ 60 (401)
.|..|+-+||.. +...||.||+.+.-.
T Consensus 315 WC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCil 353 (358)
T PF10272_consen 315 WCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCIL 353 (358)
T ss_pred HHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceee
Confidence 366999999885 357899999987643
No 314
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.04 E-value=1.4 Score=40.29 Aligned_cols=31 Identities=16% Similarity=0.327 Sum_probs=23.5
Q ss_pred ccccccHHhHHHHHHc------------CCCCCCCCcccCCCC
Q 015728 30 TGQTYDRSSIEKWLAA------------GNLTCPVTMQTLHDP 60 (401)
Q Consensus 30 Cgh~fc~~Ci~~~~~~------------~~~~CP~c~~~~~~~ 60 (401)
|..-.|++|+-+||.. ++.+||.||+.+...
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~ 367 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIR 367 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEe
Confidence 4445677999999774 578899999987643
No 315
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=76.68 E-value=31 Score=38.16 Aligned_cols=139 Identities=12% Similarity=0.083 Sum_probs=93.5
Q ss_pred chHHHHHHhh----cCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc--CCchhHHHHHHHHHHhcC
Q 015728 189 KMESFIVLFE----HGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH--HNSEASDAGVRAFSALCS 262 (401)
Q Consensus 189 ~i~~Lv~~L~----~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~--~~~~~~~~a~~aL~~Ls~ 262 (401)
..|.++..-+ .++++.|..|..+|+.+...+. +++. --+|.|+.++. +++.++.+++.++..|+.
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa---~fce------s~l~llftimeksp~p~IRsN~VvalgDlav 990 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISA---EFCE------SHLPLLFTIMEKSPSPRIRSNLVVALGDLAV 990 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhH---HHHH------HHHHHHHHHHhcCCCceeeecchheccchhh
Confidence 3455555553 3578899999999999844443 4333 24699999993 456699999999999885
Q ss_pred CCchhHHHHhcCcHHHHHHHHHhh-ccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHH
Q 015728 263 TETNRKTLVQEGAINGLIAYISNA-LTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAI 341 (401)
Q Consensus 263 ~~~n~~~iv~~G~v~~Lv~lL~~~-~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~ 341 (401)
.-.| .|++..+.|... ++.+..+++.|+.+|.+|-.. .++ .-.|.++.++. ++.+.++.+..-|-
T Consensus 991 ~fpn--------lie~~T~~Ly~rL~D~~~~vRkta~lvlshLILn----dmi-KVKGql~eMA~-cl~D~~~~IsdlAk 1056 (1251)
T KOG0414|consen 991 RFPN--------LIEPWTEHLYRRLRDESPSVRKTALLVLSHLILN----DMI-KVKGQLSEMAL-CLEDPNAEISDLAK 1056 (1251)
T ss_pred hccc--------ccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHh----hhh-HhcccHHHHHH-HhcCCcHHHHHHHH
Confidence 3333 333334443211 278899999999999999643 222 34588888888 56677777777777
Q ss_pred HHHHHHhcC
Q 015728 342 NSLMMICCD 350 (401)
Q Consensus 342 ~~L~~l~~~ 350 (401)
...-.|+..
T Consensus 1057 ~FF~Els~k 1065 (1251)
T KOG0414|consen 1057 SFFKELSSK 1065 (1251)
T ss_pred HHHHHhhhc
Confidence 555555544
No 316
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.32 E-value=1.6 Score=39.81 Aligned_cols=43 Identities=12% Similarity=0.286 Sum_probs=33.9
Q ss_pred CCcccccccccccCCceEcCc----cccccHHhHHHHHHc----CCCCCCC
Q 015728 10 PHLFRCPISLDLFTDPVTLCT----GQTYDRSSIEKWLAA----GNLTCPV 52 (401)
Q Consensus 10 ~~~~~C~iC~~~~~~Pv~~~C----gh~fc~~Ci~~~~~~----~~~~CP~ 52 (401)
...++|.+|.+.+.|-....| .|-||--|-.+..+. +...||-
T Consensus 266 ~apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Qg~sgevYCPS 316 (352)
T KOG3579|consen 266 SAPLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQGASGEVYCPS 316 (352)
T ss_pred CCceeehhhhhhhccCceeecCCCcccceecccCHHHHHhhcCCCceeCCC
Confidence 345999999999999887655 599999998888775 3455665
No 317
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=75.43 E-value=71 Score=34.29 Aligned_cols=172 Identities=14% Similarity=0.181 Sum_probs=99.5
Q ss_pred ChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhc-C-Cchhhhhhcc
Q 015728 108 TLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLL-V-GETESLNLLN 185 (401)
Q Consensus 108 ~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~-~-~~~~~~~~v~ 185 (401)
++..+..+...+.+.++.-+. .....+.+|.++.++.+.... +++.|.. .+..+. . +++. ..
T Consensus 250 ~~~Vr~~~a~~l~~~a~~~~~---~~~~s~v~~~~~~L~~Ddqds--------Vr~~a~~-~~~~l~~l~~~~~--d~-- 313 (759)
T KOG0211|consen 250 TPMVRRAVASNLGNIAKVLES---EIVKSEVLPTLIQLLRDDQDS--------VREAAVE-SLVSLLDLLDDDD--DV-- 313 (759)
T ss_pred chhhHHHHHhhhHHHHHHHHH---HHHHhhccHHHhhhhhcchhh--------HHHHHHH-HHHHHHHhcCCch--hh--
Confidence 455566666666666655443 566678888888888765543 6666655 333222 1 1111 11
Q ss_pred cCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHccCCc-hhHHHHHHHHHHhcC--
Q 015728 186 EESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHHNS-EASDAGVRAFSALCS-- 262 (401)
Q Consensus 186 ~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~-~~~~~a~~aL~~Ls~-- 262 (401)
.....+.++.....++...+...+.....+ +.. .....+.. -.+++...+++... +.+.+.+.-...++.
T Consensus 314 ~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L-~~~-----~~~~~~~~-~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l 386 (759)
T KOG0211|consen 314 VKSLTESLVQAVEDGSWRVSYMVADKFSEL-SSA-----VGPSATRT-QLVPPVSNLLKDEEWEVRYAIAKKVQKLACYL 386 (759)
T ss_pred hhhhhHHHHHHhcChhHHHHHHHhhhhhhH-HHH-----hccccCcc-cchhhHHHHhcchhhhhhHHhhcchHHHhhhc
Confidence 123577888888888888888887777777 321 12222221 23566666664433 344444444455553
Q ss_pred CCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHh
Q 015728 263 TETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLL 305 (401)
Q Consensus 263 ~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La 305 (401)
+.+.+..+...-++|.+-.+.. +.+..++...+..+..+.
T Consensus 387 ~~~~~~~i~~~~ilp~~~~lv~---d~~~~vr~a~a~~~~~~~ 426 (759)
T KOG0211|consen 387 NASCYPNIPDSSILPEVQVLVL---DNALHVRSALASVITGLS 426 (759)
T ss_pred CcccccccchhhhhHHHHHHHh---cccchHHHHHhccccccC
Confidence 3345566666666787777777 566666666666665553
No 318
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.60 E-value=50 Score=35.44 Aligned_cols=173 Identities=10% Similarity=0.077 Sum_probs=98.9
Q ss_pred hhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhc
Q 015728 105 HEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLL 184 (401)
Q Consensus 105 ~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v 184 (401)
.+.....|-.|++.|+.+.+.. +....+...+++......|++.++. +.-+|+. .+..|+.-.
T Consensus 737 ~d~qvpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~Lkdedsy--------vyLnaI~-gv~~Lcevy------- 799 (982)
T KOG4653|consen 737 HDDQVPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTLKDEDSY--------VYLNAIR-GVVSLCEVY------- 799 (982)
T ss_pred cCCcccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhcccCce--------eeHHHHH-HHHHHHHhc-------
Confidence 4556778999999999999876 3455566789999999999998876 7777777 555565211
Q ss_pred ccCCchHHHHH-HhhcC---CHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHH----Hcc-CCchhHHHHHH
Q 015728 185 NEESKMESFIV-LFEHG---SCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIIS----LVH-HNSEASDAGVR 255 (401)
Q Consensus 185 ~~~g~i~~Lv~-~L~~~---~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~----lL~-~~~~~~~~a~~ 255 (401)
....+|.+.+ ...+. ..+.+...-.++.+++..-+ + ++. +-...|+. .++ ++...+-.+..
T Consensus 800 -~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~G---e----l~~--~y~~~Li~tfl~gvrepd~~~RaSS~a 869 (982)
T KOG4653|consen 800 -PEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALG---E----LVF--KYKAVLINTFLSGVREPDHEFRASSLA 869 (982)
T ss_pred -chhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhc---c----HHH--HHHHHHHHHHHHhcCCchHHHHHhHHH
Confidence 2334666666 33221 13444444455555522111 1 111 22223333 233 23335666677
Q ss_pred HHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhC
Q 015728 256 AFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLA 306 (401)
Q Consensus 256 aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~ 306 (401)
.+.+||.-.+-+..=+=..++.-++.+... +++..++..|+-+|..+-.
T Consensus 870 ~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~--d~s~~vRRaAv~li~~lL~ 918 (982)
T KOG4653|consen 870 NLGQLCQLLAFQVSDFFHEVLQLILSLETT--DGSVLVRRAAVHLLAELLN 918 (982)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHcc--CCchhhHHHHHHHHHHHHh
Confidence 777777422211110112245555666664 5666777777777776654
No 319
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=74.34 E-value=1.2e+02 Score=31.81 Aligned_cols=169 Identities=14% Similarity=0.073 Sum_probs=101.9
Q ss_pred hHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHH---hcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHH
Q 015728 94 SLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLI---QLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQ 170 (401)
Q Consensus 94 ~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~---~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L 170 (401)
.+.+|.-+++ -+.+++..|+..||.+..++..+-..+- ....+..++..+. .+ +.-+--++. .|
T Consensus 546 ~l~~l~~l~~---wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~--------~an~ll~vR-~L 612 (745)
T KOG0301|consen 546 SLLALAILLQ---WPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-AD--------PANQLLVVR-CL 612 (745)
T ss_pred HHHHHHHHhc---CCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cc--------hhHHHHHHH-HH
Confidence 3334444454 4578999999999999998887654443 1346667777665 22 235666777 66
Q ss_pred HhhcCCchhhhhhcccCCchHHHHHH---hhcC-CHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc---
Q 015728 171 KLLLVGETESLNLLNEESKMESFIVL---FEHG-SCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV--- 243 (401)
Q Consensus 171 ~~l~~~~~~~~~~v~~~g~i~~Lv~~---L~~~-~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL--- 243 (401)
.|+=.+. -.++.+... ...+++. .+++ +...+...+....|+ |..- ...+-+ + |..+.|...+
T Consensus 613 ~N~f~~~-~g~~~~~s~--~~~i~~~~~~~~s~~~knl~ia~atlaln~-sv~l-~~~~~~-~----~~~~~l~~ai~~~ 682 (745)
T KOG0301|consen 613 ANLFSNP-AGRELFMSR--LESILDPVIEASSLSNKNLQIALATLALNY-SVLL-IQDNEQ-L----EGKEVLLSAISTL 682 (745)
T ss_pred HHhccCH-HHHHHHHHH--HHHHhhhhhhhhcccchhHHHHHHHHHHHH-HHHH-Hhcccc-c----chHHHHHHHHHhh
Confidence 6654443 334444221 2222222 1233 356666666666666 4321 001111 1 3344444443
Q ss_pred -c--CCchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHh
Q 015728 244 -H--HNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISN 285 (401)
Q Consensus 244 -~--~~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~ 285 (401)
. .+.++.-.++.||.+|+..+.+..++.+.=-|..+++-++.
T Consensus 683 ~e~~~d~EA~yR~l~AlgtL~t~~~~~~~~A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 683 LEPVDDLEAIYRLLVALGTLMTVDASVIQLAKNRSVDSIAKKLKE 727 (745)
T ss_pred cccchhHHHHHHHHHHHHhhccccHHHHHHHHhcCHHHHHHHHHH
Confidence 2 24467888899999999999999999887788999998875
No 320
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=74.13 E-value=25 Score=28.73 Aligned_cols=71 Identities=15% Similarity=0.084 Sum_probs=52.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHhcCC-HHHHHHHHHcCcHHHHHHHhhcCCCH-HHHHHHHHHHHHHHH
Q 015728 321 VYALVKMVFRVSDHEGSENAINSLMMICCDS-LQAREEAICAGVLTQLLLLLQSQCSN-RTKTKARMLLKLLRS 392 (401)
Q Consensus 321 i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~v~~L~~ll~~~~~~-~~~~~A~~~L~~l~~ 392 (401)
+..|-+. ++++++..+-.|+.+|-.+..+. .....++...+.+..|..++....+. .+|+++..++.....
T Consensus 39 ~r~l~kr-l~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 39 VRLLKKR-LNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHH-HcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 4456664 45678889999999999998884 46777888999999999998765343 377766666555444
No 321
>PF14353 CpXC: CpXC protein
Probab=74.11 E-value=2 Score=34.94 Aligned_cols=47 Identities=23% Similarity=0.235 Sum_probs=30.9
Q ss_pred cccccccccccCCceEcCccccccHHhHHHHHHc--CCCCCCCCcccCC
Q 015728 12 LFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAA--GNLTCPVTMQTLH 58 (401)
Q Consensus 12 ~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~--~~~~CP~c~~~~~ 58 (401)
+++||-|+..|.-.+-..-.-..-..-.+..+.. ..++||.|+..+.
T Consensus 1 ~itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 1 EITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFR 49 (128)
T ss_pred CcCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCcee
Confidence 3689999999887775544433334445555542 2477999998764
No 322
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=73.79 E-value=1.6 Score=40.43 Aligned_cols=43 Identities=7% Similarity=0.017 Sum_probs=28.6
Q ss_pred cccccccccccCCc-eEcCccccccHHhHHHHHHcCCCCCCCCcccC
Q 015728 12 LFRCPISLDLFTDP-VTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTL 57 (401)
Q Consensus 12 ~~~C~iC~~~~~~P-v~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~ 57 (401)
.-+|.-|..-+..- ..++|.|.||..|-... ..+.||.|...+
T Consensus 90 VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~---~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 90 VHFCDRCDFPIAIYGRMIPCKHVFCLECARSD---SDKICPLCDDRV 133 (389)
T ss_pred eEeecccCCcceeeecccccchhhhhhhhhcC---ccccCcCcccHH
Confidence 34677777644322 24699999999996421 346799997553
No 323
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=72.77 E-value=21 Score=29.59 Aligned_cols=73 Identities=14% Similarity=0.078 Sum_probs=51.1
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCH-HHHHHHHHcCcHHH-HHHHhhcC--CCHHHHHHHHHHHHHHHH
Q 015728 320 GVYALVKMVFRVSDHEGSENAINSLMMICCDSL-QAREEAICAGVLTQ-LLLLLQSQ--CSNRTKTKARMLLKLLRS 392 (401)
Q Consensus 320 ~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~v~~-L~~ll~~~--~~~~~~~~A~~~L~~l~~ 392 (401)
++..|-+.|....++.++..|+.+|-.+..+.+ ....++...+.+.. |+.++... ....+|++...+++..+.
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 455666655434467788889999988888765 67778888888886 99998642 134778776666665554
No 324
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=72.69 E-value=3.1 Score=27.32 Aligned_cols=39 Identities=28% Similarity=0.575 Sum_probs=22.6
Q ss_pred ccccccccC--CceEcCccc-----cccHHhHHHHHHc-CCCCCCCC
Q 015728 15 CPISLDLFT--DPVTLCTGQ-----TYDRSSIEKWLAA-GNLTCPVT 53 (401)
Q Consensus 15 C~iC~~~~~--~Pv~~~Cgh-----~fc~~Ci~~~~~~-~~~~CP~c 53 (401)
|-||++.-. +|...||+- .....|+.+|+.. +...|+.|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 557776433 256777653 2367899999985 55668876
No 325
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=72.41 E-value=93 Score=29.78 Aligned_cols=162 Identities=15% Similarity=0.154 Sum_probs=104.1
Q ss_pred hHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcC-Cch-hhhhhcccCC-chHHHHHHhhcC----C---------H
Q 015728 139 LPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLV-GET-ESLNLLNEES-KMESFIVLFEHG----S---------C 202 (401)
Q Consensus 139 i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~-~~~-~~~~~v~~~g-~i~~Lv~~L~~~----~---------~ 202 (401)
+..+.+.|.+... .+...++. +|..+.. +.. ..++++..-+ ..+.+..++... . .
T Consensus 58 ~k~lyr~L~~~~~--------~~~~~~Lr-LL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~ 128 (330)
T PF11707_consen 58 LKLLYRSLSSSKP--------SLTNPALR-LLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKP 128 (330)
T ss_pred HHHHHHHhCcCcH--------HHHHHHHH-HHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCc
Confidence 6666677766653 36667777 8887775 432 2344442222 234444444211 1 1
Q ss_pred HHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhHHHHHHHHHH-hcCCCc----hhHHHHhcCcH
Q 015728 203 SIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEASDAGVRAFSA-LCSTET----NRKTLVQEGAI 276 (401)
Q Consensus 203 ~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~a~~aL~~-Ls~~~~----n~~~iv~~G~v 276 (401)
.+|......+..+....+ ...+..+....+.+..+.+-|. ++.+.....+.+|+. +-.++. .|..+....++
T Consensus 129 siR~~fI~F~Lsfl~~~~--~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L 206 (330)
T PF11707_consen 129 SIRTNFIRFWLSFLSSGD--PELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTL 206 (330)
T ss_pred CHHHHHHHHHHHHHccCC--HHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHH
Confidence 677777776666634433 3677777666678888888884 455699999999995 444443 46666677789
Q ss_pred HHHHHHHHhhccccc----hHHHHHHHHHHHHhCCHhhHHHH
Q 015728 277 NGLIAYISNALTRER----SLAAIAMARIEQLLAIENSKDAL 314 (401)
Q Consensus 277 ~~Lv~lL~~~~~~~~----~~~~~a~~~L~~La~~~~~~~~~ 314 (401)
..|+.+.. ..++ .+.+.+-..|..+|.++..-..+
T Consensus 207 ~~l~~Ly~---~~~~~~~~~~~~~vh~fL~~lcT~p~~Gv~f 245 (330)
T PF11707_consen 207 SQLASLYS---RDGEDEKSSVADLVHEFLLALCTDPKHGVCF 245 (330)
T ss_pred HHHHHHhc---ccCCcccchHHHHHHHHHHHHhcCCCccccc
Confidence 99999666 3444 78889999999999866544433
No 326
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=71.96 E-value=89 Score=33.87 Aligned_cols=176 Identities=11% Similarity=0.155 Sum_probs=101.7
Q ss_pred hcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCc-hhhhhhc
Q 015728 106 EATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGE-TESLNLL 184 (401)
Q Consensus 106 ~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~-~~~~~~v 184 (401)
++.+.++.+|+..+...+.... ........|.+..++.....+. + ..+...|+. .+..|+..- ...+...
T Consensus 264 s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDa-N------~~v~~~aa~-~l~~ia~~lr~~~~~~~ 334 (815)
T KOG1820|consen 264 SKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDA-N------INVVMLAAQ-ILELIAKKLRPLFRKYA 334 (815)
T ss_pred ccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCc-c------hhHHHHHHH-HHHHHHHhcchhhHHHH
Confidence 4679999999999999997654 1111112344445555443332 2 346666666 666665221 1223333
Q ss_pred ccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhHHHHHHHHHHhc-C
Q 015728 185 NEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEASDAGVRAFSALC-S 262 (401)
Q Consensus 185 ~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~a~~aL~~Ls-~ 262 (401)
.+..+.+++.+.......+..+..++-.+ ... +.....++.....++ +++..+......+.... .
T Consensus 335 --~~v~p~lld~lkekk~~l~d~l~~~~d~~-~ns----------~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~ 401 (815)
T KOG1820|consen 335 --KNVFPSLLDRLKEKKSELRDALLKALDAI-LNS----------TPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRK 401 (815)
T ss_pred --HhhcchHHHHhhhccHHHHHHHHHHHHHH-Hhc----------ccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhh
Confidence 35688888888777777776665555555 221 111245677777774 45655555444444333 2
Q ss_pred CC-chhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhC
Q 015728 263 TE-TNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLA 306 (401)
Q Consensus 263 ~~-~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~ 306 (401)
.+ .+-..-.-.+.+|.++.... +.+.+++..|..++..+-.
T Consensus 402 ~~~~~~~~~t~~~l~p~~~~~~~---D~~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 402 LGPKTVEKETVKTLVPHLIKHIN---DTDKDVRKAALEAVAAVMK 443 (815)
T ss_pred cCCcCcchhhHHHHhHHHhhhcc---CCcHHHHHHHHHHHHHHHH
Confidence 22 22222223456777777776 6788899998888876653
No 327
>PHA02862 5L protein; Provisional
Probab=71.86 E-value=3.6 Score=33.78 Aligned_cols=45 Identities=13% Similarity=0.221 Sum_probs=32.5
Q ss_pred cccccccccCCceEcCccc-----cccHHhHHHHHHc-CCCCCCCCcccCCC
Q 015728 14 RCPISLDLFTDPVTLCTGQ-----TYDRSSIEKWLAA-GNLTCPVTMQTLHD 59 (401)
Q Consensus 14 ~C~iC~~~~~~Pv~~~Cgh-----~fc~~Ci~~~~~~-~~~~CP~c~~~~~~ 59 (401)
.|=||.+--.+.+ .||.. -..+.|+.+|... +...||.|+.++.-
T Consensus 4 iCWIC~~~~~e~~-~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 4 ICWICNDVCDERN-NFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred EEEEecCcCCCCc-ccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 5889998765543 45442 2357999999985 56789999988754
No 328
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=71.26 E-value=45 Score=25.73 Aligned_cols=66 Identities=15% Similarity=0.107 Sum_probs=48.5
Q ss_pred hHHHHHHHHHc-cCCchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHH
Q 015728 233 DRLLREIISLV-HHNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARI 301 (401)
Q Consensus 233 ~g~i~~Lv~lL-~~~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L 301 (401)
.+.+..|+.-+ ..+......++..|..|...+.....+.+-|++..|-++=. ..++..+...-.++
T Consensus 29 ~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~---~~~~~~~~~id~il 95 (98)
T PF14726_consen 29 RLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRP---NVEPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHh---cCCHHHHHHHHHHH
Confidence 35556666655 35556899999999999999999999999999999777765 44555555444443
No 329
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=70.90 E-value=48 Score=35.00 Aligned_cols=96 Identities=16% Similarity=0.150 Sum_probs=65.6
Q ss_pred HHHHHHHHHc-c-CCchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhH
Q 015728 234 RLLREIISLV-H-HNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSK 311 (401)
Q Consensus 234 g~i~~Lv~lL-~-~~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~ 311 (401)
++|..|+++- + .+.+++++|+-+|.-++..+. ..+|..|++|.. +-++-++--++.+|..-|....++
T Consensus 554 kair~lLh~aVsD~nDDVrRaAVialGFVl~~dp--------~~~~s~V~lLse--s~N~HVRyGaA~ALGIaCAGtG~~ 623 (929)
T KOG2062|consen 554 KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDP--------EQLPSTVSLLSE--SYNPHVRYGAAMALGIACAGTGLK 623 (929)
T ss_pred hhHHHhhcccccccchHHHHHHHHHheeeEecCh--------hhchHHHHHHhh--hcChhhhhhHHHHHhhhhcCCCcH
Confidence 6777777764 3 466799999999987764332 245777889986 456778888999999888877777
Q ss_pred HHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 015728 312 DALINNPNGVYALVKMVFRVSDHEGSENAINSLMMI 347 (401)
Q Consensus 312 ~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l 347 (401)
..+- |++-|..+...-+++.|+-++..|
T Consensus 624 eAi~--------lLepl~~D~~~fVRQgAlIa~amI 651 (929)
T KOG2062|consen 624 EAIN--------LLEPLTSDPVDFVRQGALIALAMI 651 (929)
T ss_pred HHHH--------HHhhhhcChHHHHHHHHHHHHHHH
Confidence 6663 333344444445666666666544
No 330
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=70.79 E-value=1.8 Score=39.95 Aligned_cols=50 Identities=20% Similarity=0.323 Sum_probs=36.4
Q ss_pred CCcccccccccccC-Cc-eE-cCccccccHHhHHHHHHc----------------------CCCCCCCCcccCCC
Q 015728 10 PHLFRCPISLDLFT-DP-VT-LCTGQTYDRSSIEKWLAA----------------------GNLTCPVTMQTLHD 59 (401)
Q Consensus 10 ~~~~~C~iC~~~~~-~P-v~-~~Cgh~fc~~Ci~~~~~~----------------------~~~~CP~c~~~~~~ 59 (401)
.+...|.||+.=|. .| .+ ++|.|-|...|+-+|+.. ....||+|+..+..
T Consensus 113 ~p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 113 HPNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred CCCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 34678999998665 45 44 689999999999888652 12459999877643
No 331
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=70.24 E-value=3.9 Score=42.74 Aligned_cols=49 Identities=4% Similarity=-0.086 Sum_probs=36.0
Q ss_pred CCCcccccccccccCCceE----cC---ccccccHHhHHHHHHc-----CCCCCCCCcccC
Q 015728 9 IPHLFRCPISLDLFTDPVT----LC---TGQTYDRSSIEKWLAA-----GNLTCPVTMQTL 57 (401)
Q Consensus 9 ~~~~~~C~iC~~~~~~Pv~----~~---Cgh~fc~~Ci~~~~~~-----~~~~CP~c~~~~ 57 (401)
..+.-.|++|.--+.+|+- .+ |+|.||..||..|..+ .+..|+.|..-+
T Consensus 93 ~a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci 153 (1134)
T KOG0825|consen 93 TAESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECV 153 (1134)
T ss_pred cccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHh
Confidence 4456789999988888653 34 9999999999999874 235566665544
No 332
>PLN02189 cellulose synthase
Probab=70.22 E-value=3.1 Score=45.24 Aligned_cols=46 Identities=22% Similarity=0.194 Sum_probs=34.9
Q ss_pred ccccccccccC-----CceEc--CccccccHHhHHHHHHcCCCCCCCCcccCC
Q 015728 13 FRCPISLDLFT-----DPVTL--CTGQTYDRSSIEKWLAAGNLTCPVTMQTLH 58 (401)
Q Consensus 13 ~~C~iC~~~~~-----~Pv~~--~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~ 58 (401)
-.|.||.+..- +|... .|+--.|+.|.+--.++++..||.|+..+.
T Consensus 35 ~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 48999999643 34433 388778999996666668899999997765
No 333
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=69.60 E-value=1.1e+02 Score=29.35 Aligned_cols=156 Identities=13% Similarity=0.159 Sum_probs=101.4
Q ss_pred hHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc--C---Cc---------hhHHHHHH
Q 015728 190 MESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH--H---NS---------EASDAGVR 255 (401)
Q Consensus 190 i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~--~---~~---------~~~~~a~~ 255 (401)
++.+.+.|.++.......+...|..+++.++. ...++.+..-.--.+.|.+++. . .. .++.....
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g-~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~ 136 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGG-ALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR 136 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCH-HHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence 66667777777766677777788888442331 1222322221112355666661 1 11 56677777
Q ss_pred HHHHhcC--CCchhHHHHh-cCcHHHHHHHHHhhccccchHHHHHHHHHHH-HhCC----HhhHHHHHhCCCcHHHHHHH
Q 015728 256 AFSALCS--TETNRKTLVQ-EGAINGLIAYISNALTRERSLAAIAMARIEQ-LLAI----ENSKDALINNPNGVYALVKM 327 (401)
Q Consensus 256 aL~~Ls~--~~~n~~~iv~-~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~-La~~----~~~~~~~~~~~g~i~~Lv~~ 327 (401)
.+..+.. ++..+..+.+ .+.+..+.+-|. .++.++....+.+|.. +..+ ...+..+. ++..+..|+.
T Consensus 137 F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~---~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~f-n~~~L~~l~~- 211 (330)
T PF11707_consen 137 FWLSFLSSGDPELKRDLLSQKKLMSALFKGLR---KDPPETVILILETLKDKVLKDSSVSRSTKCKLF-NEWTLSQLAS- 211 (330)
T ss_pred HHHHHHccCCHHHHHHHHHcCchHHHHHhccc---CCCHHHHHHHHHHHHHHhccCCCCChhhhhhhc-CHHHHHHHHH-
Confidence 7776654 4446777665 667888888888 5677888888888884 4333 34556666 6778899999
Q ss_pred HHhcCCh----hHHHHHHHHHHHHhcCC
Q 015728 328 VFRVSDH----EGSENAINSLMMICCDS 351 (401)
Q Consensus 328 l~~~~~~----~~~~~a~~~L~~l~~~~ 351 (401)
+....++ .+.+.+-..|..+|++.
T Consensus 212 Ly~~~~~~~~~~~~~~vh~fL~~lcT~p 239 (330)
T PF11707_consen 212 LYSRDGEDEKSSVADLVHEFLLALCTDP 239 (330)
T ss_pred HhcccCCcccchHHHHHHHHHHHHhcCC
Confidence 6666555 78899999999999764
No 334
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=69.52 E-value=4 Score=34.60 Aligned_cols=32 Identities=16% Similarity=0.430 Sum_probs=25.5
Q ss_pred cCccccccHHhHHHHHHc-----C-----CCCCCCCcccCCC
Q 015728 28 LCTGQTYDRSSIEKWLAA-----G-----NLTCPVTMQTLHD 59 (401)
Q Consensus 28 ~~Cgh~fc~~Ci~~~~~~-----~-----~~~CP~c~~~~~~ 59 (401)
..||..|..-|+..|++. + -..||.|..++..
T Consensus 188 ~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 188 IQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred cccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 469999999999999984 1 1459999887654
No 335
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=69.25 E-value=5 Score=27.22 Aligned_cols=44 Identities=16% Similarity=0.136 Sum_probs=28.7
Q ss_pred cccccccccCCce--EcCcc--ccccHHhHHHHHHcCCCCCCCCcccCCCC
Q 015728 14 RCPISLDLFTDPV--TLCTG--QTYDRSSIEKWLAAGNLTCPVTMQTLHDP 60 (401)
Q Consensus 14 ~C~iC~~~~~~Pv--~~~Cg--h~fc~~Ci~~~~~~~~~~CP~c~~~~~~~ 60 (401)
.|-.|...+...- ..-|. .|||..|.+..+. ..||-|+..+..+
T Consensus 7 nCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l~---~~CPNCgGelv~R 54 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYICSFECTFCADCAETMLN---GVCPNCGGELVRR 54 (57)
T ss_pred CccccCCCCCCCCCcceEEeEeCcccHHHHHHHhc---CcCcCCCCccccC
Confidence 3666666553221 22233 5899999988764 4699999887654
No 336
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.69 E-value=90 Score=35.85 Aligned_cols=199 Identities=19% Similarity=0.166 Sum_probs=104.9
Q ss_pred CCchHHHHHHhhcC-CHHHHHHHHHHHHHHHhcccchhhhhhhhccc-hHHHHHHHHHccCCchhHHHHHHHHHHhcCCC
Q 015728 187 ESKMESFIVLFEHG-SCSIKKRLCHLVEVIISSSHETKELCCKLGKD-DRLLREIISLVHHNSEASDAGVRAFSALCSTE 264 (401)
Q Consensus 187 ~g~i~~Lv~~L~~~-~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~-~g~i~~Lv~lL~~~~~~~~~a~~aL~~Ls~~~ 264 (401)
++.|..++++.++. ....|.-||.=+..| +.. .+..+... .-.||.|.+.=.+.....+.|..-+||.-..+
T Consensus 955 PdLVYKFM~LAnh~A~wnSk~GaAfGf~~i-~~~-----a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D 1028 (1702)
T KOG0915|consen 955 PDLVYKFMQLANHNATWNSKKGAAFGFGAI-AKQ-----AGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITD 1028 (1702)
T ss_pred hHHHHHHHHHhhhhchhhcccchhhchHHH-HHH-----HHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccC
Confidence 33444555555443 345666677667666 432 13333211 12344444443233346777888888855433
Q ss_pred chhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCC---hh---HHH
Q 015728 265 TNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSD---HE---GSE 338 (401)
Q Consensus 265 ~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~---~~---~~~ 338 (401)
.+.+++.=.=+.+=+||.+..+..=.+++.++-+|..|-.....-... .-+|.+-.+++|.-+ +. +-+
T Consensus 1029 --~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~----e~lpelw~~~fRvmDDIKEsVR~aa~ 1102 (1702)
T KOG0915|consen 1029 --SKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVK----EKLPELWEAAFRVMDDIKESVREAAD 1102 (1702)
T ss_pred --hHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233444322233334444311344578899999999988654332222 124555555555422 22 333
Q ss_pred HHHHHHHHHhcCC----HHHHHHHHHcCcHHHHHH--HhhcCCCHHHHHHHHHHHHHHHHhhHHhhc
Q 015728 339 NAINSLMMICCDS----LQAREEAICAGVLTQLLL--LLQSQCSNRTKTKARMLLKLLRSKWAEELK 399 (401)
Q Consensus 339 ~a~~~L~~l~~~~----~~~~~~~~~~g~v~~L~~--ll~~~~~~~~~~~A~~~L~~l~~~~~e~~~ 399 (401)
.++++|.-||-.. .-....-.-..++|.|+. +| +. .+++|+.+...+--+.++.|-++|
T Consensus 1103 ~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gim-s~-v~evr~~si~tl~dl~Kssg~~lk 1167 (1702)
T KOG0915|consen 1103 KAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIM-SK-VNEVRRFSIGTLMDLAKSSGKELK 1167 (1702)
T ss_pred HHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcc-cc-hHHHHHHHHHHHHHHHHhchhhhc
Confidence 4555665554221 111112223345555554 33 33 678999999999999998888776
No 337
>PLN02436 cellulose synthase A
Probab=68.54 E-value=3.5 Score=44.94 Aligned_cols=46 Identities=22% Similarity=0.254 Sum_probs=35.2
Q ss_pred ccccccccccC-----CceEc--CccccccHHhHHHHHHcCCCCCCCCcccCC
Q 015728 13 FRCPISLDLFT-----DPVTL--CTGQTYDRSSIEKWLAAGNLTCPVTMQTLH 58 (401)
Q Consensus 13 ~~C~iC~~~~~-----~Pv~~--~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~ 58 (401)
-.|.||.+..- +|-.. .|+.-.|+.|.+--.++++..||.|+....
T Consensus 37 ~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 37 QTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 48999999652 34443 488889999996666668899999997765
No 338
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=68.15 E-value=5.5 Score=35.49 Aligned_cols=57 Identities=26% Similarity=0.274 Sum_probs=40.1
Q ss_pred cccccccccccCCceE-cCccccccHHhHHHHHHc-CCCCCCC--CcccCCCCCCCCcHHH
Q 015728 12 LFRCPISLDLFTDPVT-LCTGQTYDRSSIEKWLAA-GNLTCPV--TMQTLHDPSIVPNHTL 68 (401)
Q Consensus 12 ~~~C~iC~~~~~~Pv~-~~Cgh~fc~~Ci~~~~~~-~~~~CP~--c~~~~~~~~~~~n~~l 68 (401)
+.+|||.......|+. ..|.|.|.+.-|..++.. ....||. |.+....+.+.-++.+
T Consensus 189 ~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~~v~d~Il 249 (275)
T COG5627 189 SNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDPYVCDHIL 249 (275)
T ss_pred cccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccchhhhHHH
Confidence 4699999888888886 579999999999988773 2456887 5444433344444443
No 339
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=68.08 E-value=33 Score=29.22 Aligned_cols=107 Identities=16% Similarity=0.206 Sum_probs=62.5
Q ss_pred chHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccc-hHHHHHHHHHcc-CC-chhHHHHHHHHHHhcCC--
Q 015728 189 KMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKD-DRLLREIISLVH-HN-SEASDAGVRAFSALCST-- 263 (401)
Q Consensus 189 ~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~-~g~i~~Lv~lL~-~~-~~~~~~a~~aL~~Ls~~-- 263 (401)
.+..+..+|++++.+.|-.++..+..++...+ .+.+... .--+..|+.+|+ .+ ....+.+..+|..|...
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~-----~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~ 100 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS-----WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIR 100 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh-----HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 35556678888888888888877777732211 2333222 235678888884 33 34777777777776643
Q ss_pred --CchhHHHHh---cCcHHHHHHHHHhhccccchHHHHHHHHHHHHh
Q 015728 264 --ETNRKTLVQ---EGAINGLIAYISNALTRERSLAAIAMARIEQLL 305 (401)
Q Consensus 264 --~~n~~~iv~---~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La 305 (401)
++-..++.. .+.|+++++++. + ....+.++.+|..|-
T Consensus 101 ~~p~l~Rei~tp~l~~~i~~ll~l~~---~--~~~~~~~l~~L~~ll 142 (165)
T PF08167_consen 101 GKPTLTREIATPNLPKFIQSLLQLLQ---D--SSCPETALDALATLL 142 (165)
T ss_pred CCCchHHHHhhccHHHHHHHHHHHHh---c--cccHHHHHHHHHHHH
Confidence 333333332 234555555555 2 456666777776654
No 340
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=67.80 E-value=95 Score=28.06 Aligned_cols=124 Identities=12% Similarity=0.162 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHH
Q 015728 159 VQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLRE 238 (401)
Q Consensus 159 ~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~ 238 (401)
++.+...+. .|..++.++... ..-.+..+..+.+.+..+.+.-+...+..+-...+ +. .|.+..
T Consensus 15 ~~~~~~~L~-~L~~l~~~~~~~-----~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~-----r~-----f~~L~~ 78 (234)
T PF12530_consen 15 PELQLPLLE-ALPSLACHKNVC-----VPPVLQTLVSLVEQGSLELRYVALRLLTLLWKAND-----RH-----FPFLQP 78 (234)
T ss_pred hHHHHHHHH-HHHHHhccCccc-----hhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCc-----hH-----HHHHHH
Confidence 568888888 888888665111 12235555666666666665566666666622221 11 145555
Q ss_pred HHHHc--------cC-C--chhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHH-HhhccccchHHHHHHHHHHHHh
Q 015728 239 IISLV--------HH-N--SEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYI-SNALTRERSLAAIAMARIEQLL 305 (401)
Q Consensus 239 Lv~lL--------~~-~--~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL-~~~~~~~~~~~~~a~~~L~~La 305 (401)
++..+ .+ + .+.....+.+++.+|....+ .. ...++.|..+| . +.++..+..++..|..|+
T Consensus 79 ~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~--~g--~~ll~~ls~~L~~---~~~~~~~alale~l~~Lc 150 (234)
T PF12530_consen 79 LLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD--HG--VDLLPLLSGCLNQ---SCDEVAQALALEALAPLC 150 (234)
T ss_pred HHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh--hH--HHHHHHHHHHHhc---cccHHHHHHHHHHHHHHH
Confidence 55551 11 1 23455556788888865555 11 22688888899 5 567778999999999999
No 341
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=67.15 E-value=1.1e+02 Score=28.39 Aligned_cols=64 Identities=13% Similarity=0.204 Sum_probs=43.6
Q ss_pred HHHHHHHHccCC-chhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHh
Q 015728 235 LLREIISLVHHN-SEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLL 305 (401)
Q Consensus 235 ~i~~Lv~lL~~~-~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La 305 (401)
++-.|+.+|..+ .-.+...+..|+.+-..-+.+.. .-.+.+.+|+++|.+ +....|+.+|....
T Consensus 189 ~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~-~~~dlispllrlL~t------~~~~eAL~VLd~~v 253 (262)
T PF14225_consen 189 ILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP-HGADLISPLLRLLQT------DLWMEALEVLDEIV 253 (262)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC-cchHHHHHHHHHhCC------ccHHHHHHHHHHHH
Confidence 445666677444 44888999999988866655444 455689999999983 34456777766544
No 342
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=66.80 E-value=6.4 Score=30.89 Aligned_cols=42 Identities=21% Similarity=0.366 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchH
Q 015728 249 ASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSL 293 (401)
Q Consensus 249 ~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~ 293 (401)
........|..|+..|+--..+++.|+++.|+.||. +.+.++
T Consensus 62 dLd~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~---HeN~DI 103 (108)
T PF08216_consen 62 DLDEEIKKLSVLATAPELYPELVELGAVPSLLGLLS---HENTDI 103 (108)
T ss_pred HHHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHC---CCCcce
Confidence 345677888899999999999999999999999998 455543
No 343
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=66.79 E-value=1.6e+02 Score=30.42 Aligned_cols=144 Identities=10% Similarity=0.109 Sum_probs=76.5
Q ss_pred cCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-C----CchhHHHHHHHHHHh
Q 015728 186 EESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-H----NSEASDAGVRAFSAL 260 (401)
Q Consensus 186 ~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~----~~~~~~~a~~aL~~L 260 (401)
...++..+.+.+.++.....+.+ .++..+..... . .....+..+..++. + ...+...|..++..|
T Consensus 355 T~~a~~~i~~~i~~~~~~~~ea~-~~~~~~~~~~~---~------Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~l 424 (574)
T smart00638 355 TPPALKFIKQWIKNKKITPLEAA-QLLAVLPHTAR---Y------PTEEILKALFELAESPEVQKQPYLRESALLAYGSL 424 (574)
T ss_pred CHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHHhhh---c------CCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHH
Confidence 33467778888888765443333 33333212110 0 11245667777773 2 223555666665555
Q ss_pred c----CCCchhHHHHhcCcHHHHHHHHHhh-ccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhc--CC
Q 015728 261 C----STETNRKTLVQEGAINGLIAYISNA-LTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRV--SD 333 (401)
Q Consensus 261 s----~~~~n~~~iv~~G~v~~Lv~lL~~~-~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~--~~ 333 (401)
. .+.+.....+-...++.+.+.|..+ ...+.+-+..++.+|.|+. ....+..|...+... .+
T Consensus 425 v~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g-----------~~~~i~~l~~~l~~~~~~~ 493 (574)
T smart00638 425 VRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAG-----------HPSSIKVLEPYLEGAEPLS 493 (574)
T ss_pred HHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccC-----------ChhHHHHHHHhcCCCCCCC
Confidence 4 3333222233345888888888642 1233444566777777773 444555555533211 23
Q ss_pred hhHHHHHHHHHHHHhcC
Q 015728 334 HEGSENAINSLMMICCD 350 (401)
Q Consensus 334 ~~~~~~a~~~L~~l~~~ 350 (401)
...+-.|+.+|..++..
T Consensus 494 ~~iR~~Av~Alr~~a~~ 510 (574)
T smart00638 494 TFIRLAAILALRNLAKR 510 (574)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 46777888888877643
No 344
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=66.21 E-value=45 Score=27.55 Aligned_cols=73 Identities=19% Similarity=0.134 Sum_probs=54.0
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCH-HHHHHHHHcCcHHHHHHHhhc-----CCCHHHHHHHHHHHHHHHHh
Q 015728 320 GVYALVKMVFRVSDHEGSENAINSLMMICCDSL-QAREEAICAGVLTQLLLLLQS-----QCSNRTKTKARMLLKLLRSK 393 (401)
Q Consensus 320 ~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~v~~L~~ll~~-----~~~~~~~~~A~~~L~~l~~~ 393 (401)
++..+.+. +++.++..+-.|+.+|-.+..+.+ ..+.++...+.+.-|+.++.. .....+|++...+++..+..
T Consensus 39 a~rai~kr-l~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (139)
T cd03567 39 AVRLLAHK-IQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLE 117 (139)
T ss_pred HHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 45556664 456778889999999999887754 577788889999999999953 13568888877776665543
No 345
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=65.91 E-value=4.3 Score=44.39 Aligned_cols=46 Identities=22% Similarity=0.255 Sum_probs=34.7
Q ss_pred ccccccccccC-----CceEc--CccccccHHhHHHHHHcCCCCCCCCcccCC
Q 015728 13 FRCPISLDLFT-----DPVTL--CTGQTYDRSSIEKWLAAGNLTCPVTMQTLH 58 (401)
Q Consensus 13 ~~C~iC~~~~~-----~Pv~~--~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~ 58 (401)
-.|.||.+..- +|... .|+--.|+.|.+==.++|+..||.|+..+.
T Consensus 18 qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 18 QVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred ceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 48999999642 34443 488889999996555568899999997765
No 346
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=65.71 E-value=22 Score=27.13 Aligned_cols=70 Identities=13% Similarity=0.161 Sum_probs=49.3
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHH
Q 015728 278 GLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQ 353 (401)
Q Consensus 278 ~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~ 353 (401)
..+..|. ++...++..++..|..|..... ..+....+.+..+.. .+++.++=+--+|+..|..|+...++
T Consensus 7 ~al~~L~---dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~-~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 7 EALSDLN---DPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLS-QLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHcc---CCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHH-HcCCCCchHHHHHHHHHHHHHHHChH
Confidence 3445555 6778899999999999997666 222222234444444 56777778899999999999877654
No 347
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=65.24 E-value=6.4 Score=30.86 Aligned_cols=26 Identities=12% Similarity=0.228 Sum_probs=20.7
Q ss_pred cccccHHhHHHHHHc--------CCCCCCCCccc
Q 015728 31 GQTYDRSSIEKWLAA--------GNLTCPVTMQT 56 (401)
Q Consensus 31 gh~fc~~Ci~~~~~~--------~~~~CP~c~~~ 56 (401)
.-.||..|+...+.. ....||.|+..
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crgi 70 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGI 70 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCCe
Confidence 667999999888764 35789999863
No 348
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=64.85 E-value=3.2 Score=37.97 Aligned_cols=50 Identities=18% Similarity=0.372 Sum_probs=35.4
Q ss_pred CCcccccccccccCC---------ceEcCccccccHHhHHH-HHHc---------CCCCCCCCcccCCC
Q 015728 10 PHLFRCPISLDLFTD---------PVTLCTGQTYDRSSIEK-WLAA---------GNLTCPVTMQTLHD 59 (401)
Q Consensus 10 ~~~~~C~iC~~~~~~---------Pv~~~Cgh~fc~~Ci~~-~~~~---------~~~~CP~c~~~~~~ 59 (401)
+..+.|+.|...+.. -.+++|...+|..-..+ |+-+ .+|.||.|++.|..
T Consensus 159 ~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFAD 227 (279)
T KOG2462|consen 159 KKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFAD 227 (279)
T ss_pred cccccCCCCCceeeehHHHhhHhhccCCCcccccccccccchHHhhcccccccCCCCccCCcccchhcc
Confidence 457899999986642 22357777777776654 6554 26889999998876
No 349
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=64.28 E-value=19 Score=30.05 Aligned_cols=31 Identities=6% Similarity=0.141 Sum_probs=21.9
Q ss_pred chHHHHHHhhcCCHHHHHHHHHHHHHHHhcc
Q 015728 189 KMESFIVLFEHGSCSIKKRLCHLVEVIISSS 219 (401)
Q Consensus 189 ~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~ 219 (401)
-|.+|+++|++.+.+....|+.+|.+.+=..
T Consensus 95 NV~~LI~~L~~~d~~lA~~Aa~aLk~TlLvy 125 (154)
T PF11791_consen 95 NVQPLIDLLKSDDEELAEEAAEALKNTLLVY 125 (154)
T ss_dssp THHHHHHGG--G-TTTHHHHHHHHHT--TTC
T ss_pred cHHHHHHHHcCCcHHHHHHHHHHHHhhHHHH
Confidence 3999999999889999999999998763333
No 350
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=64.12 E-value=66 Score=33.64 Aligned_cols=141 Identities=12% Similarity=0.140 Sum_probs=71.3
Q ss_pred CchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-----CCchhHHHHHHHHHHhc-
Q 015728 188 SKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-----HNSEASDAGVRAFSALC- 261 (401)
Q Consensus 188 g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-----~~~~~~~~a~~aL~~Ls- 261 (401)
.++..+.+++.++.....+ |+.+|..+ ..... . .....+..+..|+. .+..+...|..++..|.
T Consensus 395 ~av~~i~~~I~~~~~~~~e-a~~~l~~l-~~~~~------~--Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~ 464 (618)
T PF01347_consen 395 PAVKFIKDLIKSKKLTDDE-AAQLLASL-PFHVR------R--PTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVH 464 (618)
T ss_dssp HHHHHHHHHHHTT-S-HHH-HHHHHHHH-HHT-------------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHH-HHHHHHHH-HhhcC------C--CCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhC
Confidence 3677788888876554443 44556565 22110 0 11245566666652 23346666666666654
Q ss_pred ---CCC------chhHHHHhcCcHHHHHHHHHhh-ccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhc
Q 015728 262 ---STE------TNRKTLVQEGAINGLIAYISNA-LTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRV 331 (401)
Q Consensus 262 ---~~~------~n~~~iv~~G~v~~Lv~lL~~~-~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~ 331 (401)
... ......+....++.+...|... ...+...+..++.+|.|+. .+..++.|.. ++..
T Consensus 465 ~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g-----------~~~~i~~l~~-~i~~ 532 (618)
T PF01347_consen 465 KYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLG-----------HPESIPVLLP-YIEG 532 (618)
T ss_dssp HHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT------------GGGHHHHHT-TSTT
T ss_pred ceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccC-----------CchhhHHHHh-Hhhh
Confidence 231 1223333445788888888632 1345567788899999884 3345555555 2322
Q ss_pred C---ChhHHHHHHHHHHHHhcC
Q 015728 332 S---DHEGSENAINSLMMICCD 350 (401)
Q Consensus 332 ~---~~~~~~~a~~~L~~l~~~ 350 (401)
. +...+-.|+.+|..+...
T Consensus 533 ~~~~~~~~R~~Ai~Alr~~~~~ 554 (618)
T PF01347_consen 533 KEEVPHFIRVAAIQALRRLAKH 554 (618)
T ss_dssp SS-S-HHHHHHHHHTTTTGGGT
T ss_pred ccccchHHHHHHHHHHHHHhhc
Confidence 2 334455566666555443
No 351
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=63.68 E-value=4.5 Score=40.55 Aligned_cols=35 Identities=14% Similarity=0.328 Sum_probs=29.3
Q ss_pred CcccccccccccCC-ceEcCccccccHHhHHHHHHc
Q 015728 11 HLFRCPISLDLFTD-PVTLCTGQTYDRSSIEKWLAA 45 (401)
Q Consensus 11 ~~~~C~iC~~~~~~-Pv~~~Cgh~fc~~Ci~~~~~~ 45 (401)
....|.||.+-... .+.+.|||.||..|+..++..
T Consensus 69 ~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 69 GDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred ccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhh
Confidence 45789999997775 445789999999999999885
No 352
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.65 E-value=1.6e+02 Score=29.77 Aligned_cols=138 Identities=15% Similarity=0.090 Sum_probs=73.8
Q ss_pred CchhHHHHHHHHHHhcCC-CchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHH
Q 015728 246 NSEASDAGVRAFSALCST-ETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYAL 324 (401)
Q Consensus 246 ~~~~~~~a~~aL~~Ls~~-~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~L 324 (401)
+...+..|++.|.|++.. |+-...... -.+..++.=|.+ +.+.+++-.++..|..+.....++...----.+.-.+
T Consensus 271 ~a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D--~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrl 347 (533)
T KOG2032|consen 271 SAKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYD--DLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRL 347 (533)
T ss_pred hhHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHH
Confidence 345888999999998865 443333222 245556665553 5567888888888887765444443221011222233
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHhcCCH-HHHHHH---HHcCcHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 015728 325 VKMVFRVSDHEGSENAINSLMMICCDSL-QAREEA---ICAGVLTQLLLLLQSQCSNRTKTKARMLLKL 389 (401)
Q Consensus 325 v~~l~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~---~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~ 389 (401)
.. ++.+.++..+-.|...+..|+.... ..+..+ +..+.. +|+..++.. .+.+-......++.
T Consensus 348 R~-l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~-~lllhl~d~-~p~va~ACr~~~~~ 413 (533)
T KOG2032|consen 348 RT-LFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLA-PLLLHLQDP-NPYVARACRSELRT 413 (533)
T ss_pred HH-HHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccc-cceeeeCCC-ChHHHHHHHHHHHh
Confidence 33 4556666777777777766654321 122222 223333 344444555 56544444444443
No 353
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=63.10 E-value=4.4 Score=30.61 Aligned_cols=38 Identities=21% Similarity=0.380 Sum_probs=28.2
Q ss_pred cccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCC
Q 015728 12 LFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHD 59 (401)
Q Consensus 12 ~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~ 59 (401)
.-.|-+|..-...| |+.||..|-.. ...|..|++.+..
T Consensus 44 ~~~C~~CK~~v~q~-----g~~YCq~CAYk-----kGiCamCGKki~d 81 (90)
T PF10235_consen 44 SSKCKICKTKVHQP-----GAKYCQTCAYK-----KGICAMCGKKILD 81 (90)
T ss_pred CccccccccccccC-----CCccChhhhcc-----cCcccccCCeecc
Confidence 34788998866554 78899999652 3469999988743
No 354
>PLN02195 cellulose synthase A
Probab=62.79 E-value=6.1 Score=42.84 Aligned_cols=45 Identities=9% Similarity=0.085 Sum_probs=34.4
Q ss_pred cccccccccC-----CceEc--CccccccHHhHHHHHHcCCCCCCCCcccCC
Q 015728 14 RCPISLDLFT-----DPVTL--CTGQTYDRSSIEKWLAAGNLTCPVTMQTLH 58 (401)
Q Consensus 14 ~C~iC~~~~~-----~Pv~~--~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~ 58 (401)
.|.||.+..- +|... .|+.-.|+.|.+=-.++|+..||.|+....
T Consensus 8 ~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 8 ICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred cceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 6999998432 45543 488889999996545568899999998776
No 355
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=62.63 E-value=26 Score=29.36 Aligned_cols=94 Identities=14% Similarity=0.188 Sum_probs=50.4
Q ss_pred ccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCCcHH-H--HHHHHHHHHhCCCCCCCCCCCCChhhHHHHHHhhhhh-
Q 015728 30 TGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHT-L--RHLINQWLQMGGGQHFDPNYLATIDSLSTLKHSLQSH- 105 (401)
Q Consensus 30 Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~n~~-l--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~- 105 (401)
-.+.||..|=.+... .||-|..++.-....+... + ..-.-.|+..-| +. .|-....++.+.+++...
T Consensus 26 ~~~~fC~kCG~~tI~----~Cp~C~~~IrG~y~v~gv~~~g~~~~~PsYC~~CG-kp----yPWt~~~L~aa~el~ee~e 96 (158)
T PF10083_consen 26 LREKFCSKCGAKTIT----SCPNCSTPIRGDYHVEGVFGLGGHYEAPSYCHNCG-KP----YPWTENALEAANELIEEDE 96 (158)
T ss_pred HHHHHHHHhhHHHHH----HCcCCCCCCCCceecCCeeeeCCCCCCChhHHhCC-CC----CchHHHHHHHHHHHHHHhh
Confidence 446799999887666 4999988875432221110 0 000112222221 11 144455566555555433
Q ss_pred hcChHHHHHHHHHHHHHHhcCchhhhH
Q 015728 106 EATLETKLQIVQKIHVVLRESPPASNC 132 (401)
Q Consensus 106 ~~~~~~~~~a~~~L~~l~~~~~~~r~~ 132 (401)
+=+++++..--..+..|..++|..+..
T Consensus 97 eLs~deke~~~~sl~dL~~d~PkT~vA 123 (158)
T PF10083_consen 97 ELSPDEKEQFKESLPDLTKDTPKTKVA 123 (158)
T ss_pred cCCHHHHHHHHhhhHHHhhcCCccHHH
Confidence 236667777777777777777654433
No 356
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=62.51 E-value=5.6 Score=23.90 Aligned_cols=11 Identities=27% Similarity=0.525 Sum_probs=7.8
Q ss_pred CCCCCCCCccc
Q 015728 46 GNLTCPVTMQT 56 (401)
Q Consensus 46 ~~~~CP~c~~~ 56 (401)
....||.|+..
T Consensus 16 ~~~~CP~Cg~~ 26 (33)
T cd00350 16 APWVCPVCGAP 26 (33)
T ss_pred CCCcCcCCCCc
Confidence 45679999763
No 357
>PRK04023 DNA polymerase II large subunit; Validated
Probab=61.80 E-value=7.9 Score=41.94 Aligned_cols=47 Identities=9% Similarity=-0.128 Sum_probs=32.1
Q ss_pred CcccccccccccCCceEcCccc-----cccHHhHHHHHHcCCCCCCCCcccCCCC
Q 015728 11 HLFRCPISLDLFTDPVTLCTGQ-----TYDRSSIEKWLAAGNLTCPVTMQTLHDP 60 (401)
Q Consensus 11 ~~~~C~iC~~~~~~Pv~~~Cgh-----~fc~~Ci~~~~~~~~~~CP~c~~~~~~~ 60 (401)
...+||-|...........||. .||..|-.. .+...||.|+......
T Consensus 625 g~RfCpsCG~~t~~frCP~CG~~Te~i~fCP~CG~~---~~~y~CPKCG~El~~~ 676 (1121)
T PRK04023 625 GRRKCPSCGKETFYRRCPFCGTHTEPVYRCPRCGIE---VEEDECEKCGREPTPY 676 (1121)
T ss_pred cCccCCCCCCcCCcccCCCCCCCCCcceeCccccCc---CCCCcCCCCCCCCCcc
Confidence 3578999999764433345884 489999322 1346799999887654
No 358
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.40 E-value=2.3e+02 Score=30.30 Aligned_cols=217 Identities=12% Similarity=0.128 Sum_probs=118.6
Q ss_pred HHHHHhhhhhh-cChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhc
Q 015728 96 STLKHSLQSHE-ATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLL 174 (401)
Q Consensus 96 ~~l~~~l~~~~-~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~ 174 (401)
-.++++++... ..++++..=.+.|-++...+. ....+..+|.+ +.+ |.+ +.+...|+.+.+..+-
T Consensus 224 lViVE~Irkv~~~~p~~~~~~i~~i~~lL~sts-saV~fEaa~tl---v~l--S~~--------p~alk~Aa~~~i~l~~ 289 (948)
T KOG1058|consen 224 LVIVELIRKVCLANPAEKARYIRCIYNLLSSTS-SAVIFEAAGTL---VTL--SND--------PTALKAAASTYIDLLV 289 (948)
T ss_pred HHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcCC-chhhhhhcceE---EEc--cCC--------HHHHHHHHHHHHHHHH
Confidence 34445555432 356777777888888877663 33333234432 222 222 3466666665555444
Q ss_pred CCchhhhhhccc--------------CCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHH
Q 015728 175 VGETESLNLLNE--------------ESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREII 240 (401)
Q Consensus 175 ~~~~~~~~~v~~--------------~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv 240 (401)
...+++.++++. .|.+-.++++|++++.+++..+..+...|++... -. .++..|-
T Consensus 290 kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrN-----ve------div~~Lk 358 (948)
T KOG1058|consen 290 KESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRN-----VE------DIVQFLK 358 (948)
T ss_pred hccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhcc-----HH------HHHHHHH
Confidence 333333222211 2344455677888999999999998888833321 12 2333333
Q ss_pred HHc-c---C----CchhHHHHHHHHHHhcC-CCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCC----
Q 015728 241 SLV-H---H----NSEASDAGVRAFSALCS-TETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAI---- 307 (401)
Q Consensus 241 ~lL-~---~----~~~~~~~a~~aL~~Ls~-~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~---- 307 (401)
+=+ + . +.+-++.-..+|...+. .++ +.+.+|+.|++.+. +.++. .|..+|..+...
T Consensus 359 ke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~-----~aatvV~~ll~fis---D~N~~---aas~vl~FvrE~iek~ 427 (948)
T KOG1058|consen 359 KEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPE-----VAATVVSLLLDFIS---DSNEA---AASDVLMFVREAIEKF 427 (948)
T ss_pred HHHHhccccccccchHHHHHHHHHHHHHhhcChH-----HHHHHHHHHHHHhc---cCCHH---HHHHHHHHHHHHHHhC
Confidence 322 1 1 12245556666666663 333 33458899999998 45543 355555555432
Q ss_pred HhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHH
Q 015728 308 ENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQA 354 (401)
Q Consensus 308 ~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~ 354 (401)
+.-|..+ |..|++.+-.-.+.+.-+.|++++...|....+.
T Consensus 428 p~Lr~~i------i~~l~~~~~~irS~ki~rgalwi~GeYce~~~~i 468 (948)
T KOG1058|consen 428 PNLRASI------IEKLLETFPQIRSSKICRGALWILGEYCEGLSEI 468 (948)
T ss_pred chHHHHH------HHHHHHhhhhhcccccchhHHHHHHHHHhhhHHH
Confidence 3333333 4456554433344567888999998888765533
No 359
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=61.26 E-value=1.4 Score=41.46 Aligned_cols=46 Identities=17% Similarity=0.096 Sum_probs=20.4
Q ss_pred CcccccccccccCCceEcCc---c--ccccHHhHHHHHHcCCCCCCCCcccC
Q 015728 11 HLFRCPISLDLFTDPVTLCT---G--QTYDRSSIEKWLAAGNLTCPVTMQTL 57 (401)
Q Consensus 11 ~~~~C~iC~~~~~~Pv~~~C---g--h~fc~~Ci~~~~~~~~~~CP~c~~~~ 57 (401)
..-.||+|+..-.--+...= | +-+|..|-..|.- ....||.|+..-
T Consensus 171 ~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~-~R~~Cp~Cg~~~ 221 (290)
T PF04216_consen 171 QRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRF-VRIKCPYCGNTD 221 (290)
T ss_dssp T-SS-TTT---EEEEEEE------EEEEEETTT--EEE---TTS-TTT---S
T ss_pred cCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeee-cCCCCcCCCCCC
Confidence 34699999985443333332 4 5569999988855 345699998753
No 360
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=61.25 E-value=2.1e+02 Score=29.68 Aligned_cols=183 Identities=10% Similarity=0.081 Sum_probs=101.8
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cCCc-hhHHHHHHHHHHhcCCCchhHHHH
Q 015728 194 IVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-HHNS-EASDAGVRAFSALCSTETNRKTLV 271 (401)
Q Consensus 194 v~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~-~~~~~a~~aL~~Ls~~~~n~~~iv 271 (401)
+..|.++.+..-..|+.++..+ +... .... .-.|....+++.. .+.+ ..+..++.++.+.|...+....+.
T Consensus 100 l~aL~s~epr~~~~Aaql~aaI-A~~E----lp~~--~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~ 172 (858)
T COG5215 100 LRALKSPEPRFCTMAAQLLAAI-ARME----LPNS--LWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQ 172 (858)
T ss_pred HHHhcCCccHHHHHHHHHHHHH-HHhh----Cccc--cchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHH
Confidence 4567788888888888888888 5321 1111 1124555555555 2333 489999999999997655544443
Q ss_pred hcC-cHHHHH-HHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCC----cHHHHHHHHHhcCChhHHHHHHHHHH
Q 015728 272 QEG-AINGLI-AYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPN----GVYALVKMVFRVSDHEGSENAINSLM 345 (401)
Q Consensus 272 ~~G-~v~~Lv-~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g----~i~~Lv~~l~~~~~~~~~~~a~~~L~ 345 (401)
... ++-.++ .-+++ ..+..++-.|+.+|+.=+. .-+.-+. .++ ..+...+ ..+..+.+.+..|..+|.
T Consensus 173 ~sN~il~aiv~ga~k~--et~~avRLaaL~aL~dsl~--fv~~nf~-~E~erNy~mqvvce-atq~~d~e~q~aafgCl~ 246 (858)
T COG5215 173 MSNVILFAIVMGALKN--ETTSAVRLAALKALMDSLM--FVQGNFC-YEEERNYFMQVVCE-ATQGNDEELQHAAFGCLN 246 (858)
T ss_pred HhhHHHHHHHHhhccc--CchHHHHHHHHHHHHHHHH--HHHHhhc-chhhhchhheeeeh-hccCCcHHHHHHHHHHHH
Confidence 333 333333 33443 4556677778888876221 1111121 222 2223344 456667788888888887
Q ss_pred HHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 015728 346 MICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLL 390 (401)
Q Consensus 346 ~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l 390 (401)
-|-...=+..+-..+.-........|.+. .+.+.-.|...-..+
T Consensus 247 kim~LyY~fm~~ymE~aL~alt~~~mks~-nd~va~qavEfWsti 290 (858)
T COG5215 247 KIMMLYYKFMQSYMENALAALTGRFMKSQ-NDEVAIQAVEFWSTI 290 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCc-chHHHHHHHHHHHHH
Confidence 76544333343333333334455677776 666665555544333
No 361
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.22 E-value=1.6e+02 Score=31.71 Aligned_cols=174 Identities=16% Similarity=0.206 Sum_probs=87.8
Q ss_pred ChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHH--------HHhhcCCHHHHHHHH
Q 015728 138 FLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKMESFI--------VLFEHGSCSIKKRLC 209 (401)
Q Consensus 138 ~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv--------~~L~~~~~~~~~~aa 209 (401)
.+|.++..|.+++.. +..+|+.++-.++...+. ....+-.++-+++.+ ..++.+....-+...
T Consensus 499 ~~p~li~~L~a~s~v--------vhsYAA~aiEkil~vre~-~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~Eneylm 569 (960)
T KOG1992|consen 499 LLPRLIRFLEAESRV--------VHSYAAIAIEKLLTVREN-SNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLM 569 (960)
T ss_pred HHHHHHHhccCcchH--------HHHHHHHHHHhccccccC-ccccccchhhcchHHHHHHHHHHHhccCCcccccHHHH
Confidence 688999999887643 888888867777765544 333333344444322 222222222222233
Q ss_pred HHHHHHHhcccchhhhhhhhccchHHHHHHHHHc----c--CCch----hHHHHHHHHHHhcCCCchhHHHHhcCcHHHH
Q 015728 210 HLVEVIISSSHETKELCCKLGKDDRLLREIISLV----H--HNSE----ASDAGVRAFSALCSTETNRKTLVQEGAINGL 279 (401)
Q Consensus 210 ~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL----~--~~~~----~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~L 279 (401)
.++..+.+..+ +.. |-...-.+..|..++ + .++. .-+.-...++..+......-...+...+|.+
T Consensus 570 KaImRii~i~~---~~i--~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~f 644 (960)
T KOG1992|consen 570 KAIMRIISILQ---SAI--IPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVF 644 (960)
T ss_pred HHHHHHHHhCH---Hhh--hhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHH
Confidence 33333325543 211 111123455666655 2 1232 3333333344444333223333455577777
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHhCCHhh-----H---------HHHHhCCCcHHHHHHHH
Q 015728 280 IAYISNALTRERSLAAIAMARIEQLLAIENS-----K---------DALINNPNGVYALVKMV 328 (401)
Q Consensus 280 v~lL~~~~~~~~~~~~~a~~~L~~La~~~~~-----~---------~~~~~~~g~i~~Lv~~l 328 (401)
-.+|++ +-.+..-.+...|+.|.....+ - ..+....|-||++|+++
T Consensus 645 q~Il~e---DI~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~lLsp~lW~r~gNipalvrLl 704 (960)
T KOG1992|consen 645 QTILSE---DIQEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLLSPNLWKRSGNIPALVRLL 704 (960)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhcCHHHHhhcCCcHHHHHHH
Confidence 777873 3334455566666666653333 1 23445668899999853
No 362
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=61.21 E-value=81 Score=25.01 Aligned_cols=89 Identities=18% Similarity=0.188 Sum_probs=55.4
Q ss_pred cHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHH-HHHHHHHHHHhcCC--
Q 015728 275 AINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGS-ENAINSLMMICCDS-- 351 (401)
Q Consensus 275 ~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~-~~a~~~L~~l~~~~-- 351 (401)
.+|.+.+.|.. +...+.+..+..++..|+.... + +...+..+++.+.+.-..... ..++.+|..++..-
T Consensus 7 lLP~l~~~L~~--s~~~d~~~a~ymIl~~La~k~~----L--~~~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q~~ 78 (121)
T PF12397_consen 7 LLPFLLKGLKS--SSSPDLQAAAYMILSVLASKVP----L--SDEVLNALMESILKNWTQETVQRQALICLIVLCQSQEN 78 (121)
T ss_pred HHHHHHHHHcc--CCcHHHHHHHHHHHHHHHhhcC----C--cHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHcccc
Confidence 35666666663 4566899999999999985322 2 334556777777766544444 78999998888653
Q ss_pred -----HHHHHHHHHcCcHHHHHHHh
Q 015728 352 -----LQAREEAICAGVLTQLLLLL 371 (401)
Q Consensus 352 -----~~~~~~~~~~g~v~~L~~ll 371 (401)
++..+.+.+...+...+.-+
T Consensus 79 ~~~lp~~~~~~l~~~~~l~~~L~~l 103 (121)
T PF12397_consen 79 VDSLPRKVFKALLKLPDLIELLSEL 103 (121)
T ss_pred cccCCHHHHHHHHcCccHHHHHHHH
Confidence 12344555555444444433
No 363
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=61.00 E-value=5.7 Score=34.85 Aligned_cols=46 Identities=17% Similarity=0.306 Sum_probs=36.0
Q ss_pred ccccccccccCCceEc-CccccccHHhHHHHHHcCCCCCCCCcccCCC
Q 015728 13 FRCPISLDLFTDPVTL-CTGQTYDRSSIEKWLAAGNLTCPVTMQTLHD 59 (401)
Q Consensus 13 ~~C~iC~~~~~~Pv~~-~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~ 59 (401)
..|.+|..+...-+.- .|+-.|...|+..++.+ ...||.|+.-.+.
T Consensus 182 k~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~-~~~cphc~d~w~h 228 (235)
T KOG4718|consen 182 KNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQR-RDICPHCGDLWTH 228 (235)
T ss_pred HHHhHhHHHhheeeccCcccchhhhHHHHHHhcc-cCcCCchhcccCc
Confidence 4799999988776654 58877888999999985 6679999765443
No 364
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=60.88 E-value=91 Score=26.46 Aligned_cols=115 Identities=14% Similarity=0.088 Sum_probs=69.1
Q ss_pred cHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCC-CcHHHHHHHHHhcCChhHHHHHHHHHHHHhcC---
Q 015728 275 AINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNP-NGVYALVKMVFRVSDHEGSENAINSLMMICCD--- 350 (401)
Q Consensus 275 ~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~-g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~--- 350 (401)
.+..+..+|. +++...+-.++..+..++.... ...+..+. --+..|++.+.+...+...+.++.+|..|...
T Consensus 26 l~~ri~~LL~---s~~~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~ 101 (165)
T PF08167_consen 26 LVTRINSLLQ---SKSAYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRG 101 (165)
T ss_pred HHHHHHHHhC---CCChhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 4555677777 5666666677777776665432 22222221 24666777554556667788898888777643
Q ss_pred CHHHHHHHHH---cCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHH
Q 015728 351 SLQAREEAIC---AGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAE 396 (401)
Q Consensus 351 ~~~~~~~~~~---~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e 396 (401)
.++..+++.. .+.++.++.+++. +...+.+...|..+-+++|-
T Consensus 102 ~p~l~Rei~tp~l~~~i~~ll~l~~~---~~~~~~~l~~L~~ll~~~pt 147 (165)
T PF08167_consen 102 KPTLTREIATPNLPKFIQSLLQLLQD---SSCPETALDALATLLPHHPT 147 (165)
T ss_pred CCchHHHHhhccHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHCCc
Confidence 2343334443 3445556666543 46677888888877776653
No 365
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=60.37 E-value=2.2e+02 Score=29.63 Aligned_cols=118 Identities=14% Similarity=0.195 Sum_probs=75.8
Q ss_pred CchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cCCchhHHHHH
Q 015728 176 GETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-HHNSEASDAGV 254 (401)
Q Consensus 176 ~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~a~ 254 (401)
++++..+++ +|.+..+++-+.+.+..+|.++..+|..+ +..-. +....+. +|.+..|..=+ +..+.++..|+
T Consensus 81 ~dpeg~~~V--~~~~~h~lRg~eskdk~VR~r~lqila~~-~d~v~--eIDe~l~--N~L~ekl~~R~~DRE~~VR~eAv 153 (885)
T COG5218 81 DDPEGEELV--AGTFYHLLRGTESKDKKVRKRSLQILALL-SDVVR--EIDEVLA--NGLLEKLSERLFDREKAVRREAV 153 (885)
T ss_pred CChhhhHHH--HHHHHHHHhcccCcchhHHHHHHHHHHHH-HHhcc--hHHHHHH--HHHHHHHHHHHhcchHHHHHHHH
Confidence 344434555 47788899988999999999999999888 43210 2222322 36666666544 55566999999
Q ss_pred HHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHh
Q 015728 255 RAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIEN 309 (401)
Q Consensus 255 ~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~ 309 (401)
.+|..+-....|-.- ..+..|+.++++ +++.+++..|+ .++..++.
T Consensus 154 ~~L~~~Qe~~~neen----~~~n~l~~~vqn--DPS~EVRr~al---lni~vdns 199 (885)
T COG5218 154 KVLCYYQEMELNEEN----RIVNLLKDIVQN--DPSDEVRRLAL---LNISVDNS 199 (885)
T ss_pred HHHHHHHhccCChHH----HHHHHHHHHHhc--CcHHHHHHHHH---HHeeeCCC
Confidence 999987643333221 134478888886 67777776654 45554443
No 366
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=60.36 E-value=5.6 Score=27.92 Aligned_cols=13 Identities=23% Similarity=0.675 Sum_probs=9.7
Q ss_pred cccHHhHHHHHHc
Q 015728 33 TYDRSSIEKWLAA 45 (401)
Q Consensus 33 ~fc~~Ci~~~~~~ 45 (401)
.||+.|+.+|+..
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999884
No 367
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=59.67 E-value=4.7 Score=35.85 Aligned_cols=39 Identities=13% Similarity=0.059 Sum_probs=27.6
Q ss_pred ccccccccCCceEcCccc-cccHHhHHHHHHcCCCCCCCCcccCC
Q 015728 15 CPISLDLFTDPVTLCTGQ-TYDRSSIEKWLAAGNLTCPVTMQTLH 58 (401)
Q Consensus 15 C~iC~~~~~~Pv~~~Cgh-~fc~~Ci~~~~~~~~~~CP~c~~~~~ 58 (401)
|-.|.+-=..=+.+||.| .+|..|-. +...||.|+....
T Consensus 161 Cr~C~~~~~~VlllPCrHl~lC~~C~~-----~~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGEREATVLLLPCRHLCLCGICDE-----SLRICPICRSPKT 200 (207)
T ss_pred ceecCcCCceEEeecccceEecccccc-----cCccCCCCcChhh
Confidence 888888655544579998 66888843 2456999986543
No 368
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=59.47 E-value=4.7 Score=22.87 Aligned_cols=8 Identities=25% Similarity=0.380 Sum_probs=4.0
Q ss_pred cccccccc
Q 015728 15 CPISLDLF 22 (401)
Q Consensus 15 C~iC~~~~ 22 (401)
||-|....
T Consensus 3 CP~C~~~V 10 (26)
T PF10571_consen 3 CPECGAEV 10 (26)
T ss_pred CCCCcCCc
Confidence 55555533
No 369
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.29 E-value=2.5e+02 Score=30.07 Aligned_cols=54 Identities=11% Similarity=0.106 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhccc
Q 015728 160 QFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSH 220 (401)
Q Consensus 160 ~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~ 220 (401)
.+..+|+. +...+.. ...+ .+. .++..|--++++.....|-.|.++|..+ ++..
T Consensus 260 mV~~EaAr-ai~~l~~--~~~r-~l~--pavs~Lq~flssp~~~lRfaAvRtLnkv-Am~~ 313 (865)
T KOG1078|consen 260 MVIYEAAR-AIVSLPN--TNSR-ELA--PAVSVLQLFLSSPKVALRFAAVRTLNKV-AMKH 313 (865)
T ss_pred HHHHHHHH-HHhhccc--cCHh-hcc--hHHHHHHHHhcCcHHHHHHHHHHHHHHH-HHhC
Confidence 37777777 5554442 2223 331 2788888888888889999999999999 7654
No 370
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=58.90 E-value=79 Score=32.61 Aligned_cols=99 Identities=13% Similarity=0.171 Sum_probs=65.1
Q ss_pred CcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcC--C
Q 015728 274 GAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCD--S 351 (401)
Q Consensus 274 G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~--~ 351 (401)
|.+..+++-+. +++..++...+..|+.+...-..-.... ..|.+..|.+.++. ..+.++..|+.+|..+-.. +
T Consensus 91 ~~~~h~lRg~e---skdk~VR~r~lqila~~~d~v~eIDe~l-~N~L~ekl~~R~~D-RE~~VR~eAv~~L~~~Qe~~~n 165 (885)
T COG5218 91 GTFYHLLRGTE---SKDKKVRKRSLQILALLSDVVREIDEVL-ANGLLEKLSERLFD-REKAVRREAVKVLCYYQEMELN 165 (885)
T ss_pred HHHHHHHhccc---CcchhHHHHHHHHHHHHHHhcchHHHHH-HHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHhccCC
Confidence 44444555455 6778899999999998886432222332 34667777776553 3457888899999876432 2
Q ss_pred HHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHH
Q 015728 352 LQAREEAICAGVLTQLLLLLQSQCSNRTKTKAR 384 (401)
Q Consensus 352 ~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~ 384 (401)
++.+ ....|+.++|.+++.++|+.|.
T Consensus 166 een~-------~~n~l~~~vqnDPS~EVRr~al 191 (885)
T COG5218 166 EENR-------IVNLLKDIVQNDPSDEVRRLAL 191 (885)
T ss_pred hHHH-------HHHHHHHHHhcCcHHHHHHHHH
Confidence 3333 2346788888888889888764
No 371
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=58.21 E-value=65 Score=24.88 Aligned_cols=79 Identities=15% Similarity=0.133 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHH
Q 015728 160 QFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREI 239 (401)
Q Consensus 160 ~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~L 239 (401)
+++..|+..+...+..+--....++.....+..|+......+...++.+...|..+ ...+ .....+... |+.+.|
T Consensus 2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L-~~~~---~a~~~l~~i-G~~~fL 76 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRL-LKSP---YAAQILRDI-GAVRFL 76 (98)
T ss_pred hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHH-HhCc---HHHHHHHHc-cHHHHH
Confidence 36677777666655432222223343445677777777777777888888888888 6654 455555554 777775
Q ss_pred HHHc
Q 015728 240 ISLV 243 (401)
Q Consensus 240 v~lL 243 (401)
-++-
T Consensus 77 ~klr 80 (98)
T PF14726_consen 77 SKLR 80 (98)
T ss_pred HHHH
Confidence 5554
No 372
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=58.03 E-value=8.3 Score=40.52 Aligned_cols=67 Identities=10% Similarity=0.162 Sum_probs=49.1
Q ss_pred CCCcccccccccccCCceE-cCccccccHHhHHHHHHc-----CCCCCCCCcccCCCCCCCCcHHHHHHHHHHHH
Q 015728 9 IPHLFRCPISLDLFTDPVT-LCTGQTYDRSSIEKWLAA-----GNLTCPVTMQTLHDPSIVPNHTLRHLINQWLQ 77 (401)
Q Consensus 9 ~~~~~~C~iC~~~~~~Pv~-~~Cgh~fc~~Ci~~~~~~-----~~~~CP~c~~~~~~~~~~~n~~l~~~i~~~~~ 77 (401)
+.--|.|||++..++-|.. ..|+|-=|-.-. |+-. ..+.||+|.+......+..+..+.+++...-.
T Consensus 303 ~~vSL~CPl~~~Rm~~P~r~~~CkHlQcFD~~--~~lq~n~~~pTW~CPVC~~~~~~e~l~iD~~~~~iL~~~~~ 375 (636)
T KOG2169|consen 303 LRVSLNCPLSKMRMSLPARGHTCKHLQCFDAL--SYLQMNEQKPTWRCPVCQKAAPFEGLIIDGYFLNILQSCQA 375 (636)
T ss_pred ceeEecCCcccceeecCCcccccccceecchh--hhHHhccCCCeeeCccCCccccccchhhhHHHHHHHhhccC
Confidence 3446899999999988876 478885444332 2221 35789999998888888888888888877655
No 373
>PLN02400 cellulose synthase
Probab=57.61 E-value=5.3 Score=43.72 Aligned_cols=46 Identities=20% Similarity=0.130 Sum_probs=34.5
Q ss_pred ccccccccccC-----CceEc--CccccccHHhHHHHHHcCCCCCCCCcccCC
Q 015728 13 FRCPISLDLFT-----DPVTL--CTGQTYDRSSIEKWLAAGNLTCPVTMQTLH 58 (401)
Q Consensus 13 ~~C~iC~~~~~-----~Pv~~--~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~ 58 (401)
-.|.||.+..- +|-.. .|+--.|+.|.+--.++++..||.|+..+.
T Consensus 37 qiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 37 QICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred ceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 48999999642 34443 488889999996445568899999997765
No 374
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=56.66 E-value=7.7 Score=42.39 Aligned_cols=48 Identities=19% Similarity=0.244 Sum_probs=35.8
Q ss_pred CcccccccccccC-----CceEc--CccccccHHhHHHHHHcCCCCCCCCcccCC
Q 015728 11 HLFRCPISLDLFT-----DPVTL--CTGQTYDRSSIEKWLAAGNLTCPVTMQTLH 58 (401)
Q Consensus 11 ~~~~C~iC~~~~~-----~Pv~~--~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~ 58 (401)
..-.|.||.+..- +|... .|+--.|+.|.+--.++++..||.|+....
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 3457999999642 34443 488889999996555568899999998765
No 375
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=55.83 E-value=2.7e+02 Score=29.77 Aligned_cols=175 Identities=13% Similarity=0.105 Sum_probs=105.3
Q ss_pred HHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCCchH--HHHH
Q 015728 118 KIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKME--SFIV 195 (401)
Q Consensus 118 ~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~--~Lv~ 195 (401)
.|.+....++.+=+.+.+.|++..+...++..+. ...+..+++ ++.+++...+.. ........+. .+-.
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~-------~~~~~~il~-~l~n~~~~~~~~-~~~~~~~~~~~~~f~~ 564 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDN-------EELHRKILG-LLGNLAEVLELR-ELLMIFEFIDFSVFKV 564 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccc-------hhHHHHHHH-HHHHHHHHhhhh-hhhhHHHHHHHHHHHH
Confidence 7778888888887888899999999999987743 468889999 999888544222 1111111121 2222
Q ss_pred HhhcCCH-HHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHccCCchhHHHHHHHHHHhc-CCCchhHHHHhc
Q 015728 196 LFEHGSC-SIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHHNSEASDAGVRAFSALC-STETNRKTLVQE 273 (401)
Q Consensus 196 ~L~~~~~-~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~a~~aL~~Ls-~~~~n~~~iv~~ 273 (401)
.+..-+. +.-..|+.+|..+++..+ + ... .+ .+..+-.-+.... ........+.-.
T Consensus 565 ~~~~w~~~ersY~~~siLa~ll~~~~---~----~~~-~~--------------~r~~~~~~l~e~i~~~~~~~~~~~~~ 622 (699)
T KOG3665|consen 565 LLNKWDSIERSYNAASILALLLSDSE---K----TTE-CV--------------FRNSVNELLVEAISRWLTSEIRVIND 622 (699)
T ss_pred HHhhcchhhHHHHHHHHHHHHHhCCC---c----Ccc-cc--------------chHHHHHHHHHHhhccCccceeehhh
Confidence 3333333 666788888888733322 1 111 01 2222333333322 233333333333
Q ss_pred CcHHH-HHHHHHhhccccchHHHHHHHHHHHHhCC-HhhHHHHHhCCCcHHHHHH
Q 015728 274 GAING-LIAYISNALTRERSLAAIAMARIEQLLAI-ENSKDALINNPNGVYALVK 326 (401)
Q Consensus 274 G~v~~-Lv~lL~~~~~~~~~~~~~a~~~L~~La~~-~~~~~~~~~~~g~i~~Lv~ 326 (401)
..+.+ +..++.. +..+..+--|++++.++... +++...+ .+.|+++.+.+
T Consensus 623 ~~f~~~~~~il~~--s~~~g~~lWal~ti~~~~~~~~~~~~~~-~~~~~~~~~~~ 674 (699)
T KOG3665|consen 623 RSFFPRILRILRL--SKSDGSQLWALWTIKNVLEQNKEYCKLV-RESNGFELIEN 674 (699)
T ss_pred hhcchhHHHHhcc--cCCCchHHHHHHHHHHHHHcChhhhhhh-Hhccchhhhhh
Confidence 44555 6667764 55667778899999999865 5555555 57888888777
No 376
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=55.39 E-value=2.2e+02 Score=28.16 Aligned_cols=87 Identities=16% Similarity=0.169 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcC-CchhhhhhcccC
Q 015728 109 LETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLV-GETESLNLLNEE 187 (401)
Q Consensus 109 ~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~-~~~~~~~~v~~~ 187 (401)
...-.+|+++|+|+.-.++..|....+...+..+.+.+.+....++ -.+++..=+. +|..++. ..+...+++.+.
T Consensus 111 ~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~---~~~~~~~dlr-LLflltale~~~Rsql~~~l 186 (532)
T KOG4464|consen 111 MHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNF---PKDSSIFDLR-LLFLLTALETDHRSQLIAEL 186 (532)
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcC---CccchhhHHH-HHHHHHHhhHHHHHHHHHHh
Confidence 3567899999999999999999999888888888877754322100 0113333455 5555553 334445667788
Q ss_pred CchHHHHHHhhc
Q 015728 188 SKMESFIVLFEH 199 (401)
Q Consensus 188 g~i~~Lv~~L~~ 199 (401)
+|++.+-+.|..
T Consensus 187 ~Gl~~lt~~led 198 (532)
T KOG4464|consen 187 LGLELLTNWLED 198 (532)
T ss_pred cccHHHHHHhhc
Confidence 899999988853
No 377
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=55.34 E-value=1.6 Score=23.96 Aligned_cols=9 Identities=22% Similarity=0.323 Sum_probs=4.4
Q ss_pred CCCCCCccc
Q 015728 48 LTCPVTMQT 56 (401)
Q Consensus 48 ~~CP~c~~~ 56 (401)
..||.|+.+
T Consensus 14 ~fC~~CG~~ 22 (23)
T PF13240_consen 14 KFCPNCGTP 22 (23)
T ss_pred cchhhhCCc
Confidence 445555543
No 378
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.22 E-value=1.8e+02 Score=31.42 Aligned_cols=146 Identities=14% Similarity=0.118 Sum_probs=84.8
Q ss_pred chhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCC-------------------
Q 015728 247 SEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAI------------------- 307 (401)
Q Consensus 247 ~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~------------------- 307 (401)
.+.+.+++.-|+.+...-.-...+...+++...+..|. +.+.-+=-+|...+..||.-
T Consensus 741 vpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lk---dedsyvyLnaI~gv~~Lcevy~e~il~dL~e~Y~s~k~k 817 (982)
T KOG4653|consen 741 VPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLK---DEDSYVYLNAIRGVVSLCEVYPEDILPDLSEEYLSEKKK 817 (982)
T ss_pred ccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhc---ccCceeeHHHHHHHHHHHHhcchhhHHHHHHHHHhcccC
Confidence 45788888888888866566666667788888888887 45555545555544444431
Q ss_pred --HhhHHHHH-------hCCC---------cHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHH
Q 015728 308 --ENSKDALI-------NNPN---------GVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLL 369 (401)
Q Consensus 308 --~~~~~~~~-------~~~g---------~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ 369 (401)
.+.+..++ ..-| .+..+++ ..++++..-+-.+...|.++|.-..-.... .-...+..++.
T Consensus 818 ~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~-gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd-~~~ev~~~Il~ 895 (982)
T KOG4653|consen 818 LQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLS-GVREPDHEFRASSLANLGQLCQLLAFQVSD-FFHEVLQLILS 895 (982)
T ss_pred CCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHH-hcCCchHHHHHhHHHHHHHHHHHHhhhhhH-HHHHHHHHHHH
Confidence 11121111 0001 1112222 123344445667777887777643211111 33445566777
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHHhhHHh
Q 015728 370 LLQSQCSNRTKTKARMLLKLLRSKWAEE 397 (401)
Q Consensus 370 ll~~~~~~~~~~~A~~~L~~l~~~~~e~ 397 (401)
+.+.+++.-+|+.|..++..+-.-+++.
T Consensus 896 l~~~d~s~~vRRaAv~li~~lL~~tg~d 923 (982)
T KOG4653|consen 896 LETTDGSVLVRRAAVHLLAELLNGTGED 923 (982)
T ss_pred HHccCCchhhHHHHHHHHHHHHhccchh
Confidence 7777778899999999998887745443
No 379
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=54.77 E-value=12 Score=32.40 Aligned_cols=53 Identities=21% Similarity=0.310 Sum_probs=29.7
Q ss_pred CCcccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCCC-CCCcHHHHHHHHHHHHh
Q 015728 10 PHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPS-IVPNHTLRHLINQWLQM 78 (401)
Q Consensus 10 ~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~-~~~n~~l~~~i~~~~~~ 78 (401)
+..|.||-|..-|. |- .... ..|.||.|+..+...+ -..-..++..|+.+.+.
T Consensus 115 ~~~Y~Cp~C~~ryt----------f~-----eA~~-~~F~Cp~Cg~~L~~~dn~~~~~~l~~~I~~l~~~ 168 (178)
T PRK06266 115 NMFFFCPNCHIRFT----------FD-----EAME-YGFRCPQCGEMLEEYDNSELIKELKEQIKELEEE 168 (178)
T ss_pred CCEEECCCCCcEEe----------HH-----HHhh-cCCcCCCCCCCCeecccHHHHHHHHHHHHHHHHH
Confidence 35677887765333 11 1222 5799999999886531 11123455555555443
No 380
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=53.87 E-value=3.2e+02 Score=29.55 Aligned_cols=184 Identities=14% Similarity=0.110 Sum_probs=97.8
Q ss_pred chHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhcc---chHHHHHHHHHccC-CchhHHHHHHHHHHhcCCC
Q 015728 189 KMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGK---DDRLLREIISLVHH-NSEASDAGVRAFSALCSTE 264 (401)
Q Consensus 189 ~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~---~~g~i~~Lv~lL~~-~~~~~~~a~~aL~~Ls~~~ 264 (401)
..|.++..++...+.++.+-...+..+ -.. ...++. .+-.+|.++.+-.. .-.++.+....+..++...
T Consensus 438 llp~~~~~l~de~~~V~lnli~~ls~~-~~v------~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~ 510 (759)
T KOG0211|consen 438 LLPLLIGNLKDEDPIVRLNLIDKLSLL-EEV------NDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQL 510 (759)
T ss_pred cChhhhhhcchhhHHHHHhhHHHHHHH-Hhc------cCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhh
Confidence 355666667777888888877666555 221 122221 12345555555432 2346666666666666443
Q ss_pred chhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHH
Q 015728 265 TNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSL 344 (401)
Q Consensus 265 ~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L 344 (401)
. ..+.+.-..+.+..-|. +....+++.|+..|..++..-...+..- ..|+.++.+..+. +-..+...+.++
T Consensus 511 ~--~~~~~~~~~~l~~~~l~---d~v~~Ir~~aa~~l~~l~~~~G~~w~~~---~~i~k~L~~~~q~-~y~~R~t~l~si 581 (759)
T KOG0211|consen 511 G--VEFFDEKLAELLRTWLP---DHVYSIREAAARNLPALVETFGSEWARL---EEIPKLLAMDLQD-NYLVRMTTLFSI 581 (759)
T ss_pred h--hHHhhHHHHHHHHhhhh---hhHHHHHHHHHHHhHHHHHHhCcchhHH---HhhHHHHHHhcCc-ccchhhHHHHHH
Confidence 3 23333222222222233 2334677888887777774322222221 2466666633332 223333334444
Q ss_pred HHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728 345 MMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS 392 (401)
Q Consensus 345 ~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~ 392 (401)
..|+. -.-..+...-.++.+..+..++ .+.+|-++++.|..+.+
T Consensus 582 ~~la~---v~g~ei~~~~Llp~~~~l~~D~-vanVR~nvak~L~~i~~ 625 (759)
T KOG0211|consen 582 HELAE---VLGQEITCEDLLPVFLDLVKDP-VANVRINVAKHLPKILK 625 (759)
T ss_pred HHHHH---HhccHHHHHHHhHHHHHhccCC-chhhhhhHHHHHHHHHh
Confidence 33322 1223455566677888877666 88889998888887766
No 381
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=52.79 E-value=2.6e+02 Score=28.16 Aligned_cols=186 Identities=12% Similarity=0.130 Sum_probs=99.1
Q ss_pred hHHHHHHhhhhhhc--ChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHH
Q 015728 94 SLSTLKHSLQSHEA--TLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQK 171 (401)
Q Consensus 94 ~~~~l~~~l~~~~~--~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~ 171 (401)
..+...+.|...++ ..+++..|+..|..+.-+....-+.=.-.-.+..++..|..... ....+.|+. +|.
T Consensus 284 ~~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~-------~~~k~laLr-vL~ 355 (516)
T KOG2956|consen 284 QSALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSED-------EIIKKLALR-VLR 355 (516)
T ss_pred hhHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchh-------hHHHHHHHH-HHH
Confidence 33334444433332 46778889998888877764332221112236677787765322 347888999 999
Q ss_pred hhcCCchhhhhhccc-CCchHHHHHHhhcCCHHHHHHHHH-HHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cCCch
Q 015728 172 LLLVGETESLNLLNE-ESKMESFIVLFEHGSCSIKKRLCH-LVEVIISSSHETKELCCKLGKDDRLLREIISLV-HHNSE 248 (401)
Q Consensus 172 ~l~~~~~~~~~~v~~-~g~i~~Lv~~L~~~~~~~~~~aa~-~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~ 248 (401)
.++.+.... +.-. .-+|..+++.-.....++...|+. ++.-+ +...+ ... |.-+..++ ..+.+
T Consensus 356 ~ml~~Q~~~--l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~l-as~~P---~~~--------I~~i~~~Ilt~D~~ 421 (516)
T KOG2956|consen 356 EMLTNQPAR--LFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTL-ASHLP---LQC--------IVNISPLILTADEP 421 (516)
T ss_pred HHHHhchHh--hhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH-HhhCc---hhH--------HHHHhhHHhcCcch
Confidence 888554321 2211 125677777666665555444444 44445 54431 111 22333333 34444
Q ss_pred hHHHHHHHHHHhcCCCc--hhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHh
Q 015728 249 ASDAGVRAFSALCSTET--NRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLL 305 (401)
Q Consensus 249 ~~~~a~~aL~~Ls~~~~--n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La 305 (401)
.-..+...+-.|...-. .-..++ ..+.|.+++--. +.+..+++.|+-.|-.+.
T Consensus 422 ~~~~~iKm~Tkl~e~l~~EeL~~ll-~diaP~~iqay~---S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 422 RAVAVIKMLTKLFERLSAEELLNLL-PDIAPCVIQAYD---STSSTVRKTAVFCLVAMV 476 (516)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHhh-hhhhhHHHHHhc---CchHHhhhhHHHhHHHHH
Confidence 44444444555543111 111112 357777877777 566778888877766554
No 382
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=52.26 E-value=47 Score=27.33 Aligned_cols=71 Identities=15% Similarity=0.239 Sum_probs=54.9
Q ss_pred hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcC-chhhhHHHhcCChHHHHHHhccCCcccchhhhHH--HHHHHHHHH
Q 015728 93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRES-PPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQ--FVEESLSCV 169 (401)
Q Consensus 93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~-~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~--~~~~a~~~~ 169 (401)
+.++.+.+-|.. +++..+..|+..|-.+.+.. +..+..+....++..|++++.+.... +. |++.++. +
T Consensus 42 ea~~~l~krl~~--~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~------~~~~Vk~k~l~-l 112 (140)
T PF00790_consen 42 EAARALRKRLKH--GNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTD------PETPVKEKILE-L 112 (140)
T ss_dssp HHHHHHHHHHTT--SSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTH------HHSHHHHHHHH-H
T ss_pred HHHHHHHHHHhC--CCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCC------chhHHHHHHHH-H
Confidence 566677776764 67889999999999999887 55778888888899999988776543 33 7888887 6
Q ss_pred HHh
Q 015728 170 QKL 172 (401)
Q Consensus 170 L~~ 172 (401)
+..
T Consensus 113 l~~ 115 (140)
T PF00790_consen 113 LQE 115 (140)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 383
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=52.18 E-value=1.4e+02 Score=25.12 Aligned_cols=142 Identities=12% Similarity=0.147 Sum_probs=76.8
Q ss_pred HHHHHHHHHccC--CchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHh-CCHhh
Q 015728 234 RLLREIISLVHH--NSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLL-AIENS 310 (401)
Q Consensus 234 g~i~~Lv~lL~~--~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La-~~~~~ 310 (401)
..++.|..+|+. +...++.+.++|..|---+..+-+.++.+.= .--.. ..+.......... .... ..++.
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~----~~~~~--~~~~~~~~~~l~~-~~~~~~~ee~ 82 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLD----SKSSE--NSNDESTDISLPM-MGISPSSEEY 82 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCC----ccccc--cccccchhhHHhh-ccCCCchHHH
Confidence 456777788842 4569999999999998666655554332111 00000 1111122211111 1111 23333
Q ss_pred HHHHHhCCCcHHHHHHHHHhcCC-hhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 015728 311 KDALINNPNGVYALVKMVFRVSD-HEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKL 389 (401)
Q Consensus 311 ~~~~~~~~g~i~~Lv~~l~~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~ 389 (401)
...+ ++..|++ ++++.+ ......++.++.++.+.-+. +-.-.-.-.+|.++..++.. .+..+|.-..-|..
T Consensus 83 y~~v-----vi~~L~~-iL~D~sLs~~h~~vv~ai~~If~~l~~-~cv~~L~~viP~~l~~i~~~-~~~~~e~~~~qL~~ 154 (160)
T PF11865_consen 83 YPTV-----VINALMR-ILRDPSLSSHHTAVVQAIMYIFKSLGL-KCVPYLPQVIPIFLRVIRTC-PDSLREFYFQQLAD 154 (160)
T ss_pred HHHH-----HHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHhcCc-CchhHHHHHhHHHHHHHHhC-CHHHHHHHHHHHHH
Confidence 3333 4788888 565533 33445678888887754221 11223345789999999865 66777775555544
Q ss_pred H
Q 015728 390 L 390 (401)
Q Consensus 390 l 390 (401)
|
T Consensus 155 l 155 (160)
T PF11865_consen 155 L 155 (160)
T ss_pred H
Confidence 4
No 384
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=51.44 E-value=15 Score=36.77 Aligned_cols=71 Identities=14% Similarity=0.088 Sum_probs=43.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728 321 VYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS 392 (401)
Q Consensus 321 i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~ 392 (401)
+..+.+.+-..++++.++.|..++.+++.+.++.+..+-....-..+++++-.. .++.-+.|+.++..+.+
T Consensus 329 ~~~~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~-~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 329 MLKALKSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTP-EPRVNKAAARALAILGE 399 (763)
T ss_pred HHHHHHHHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhccc-ccccchhhhHHHHHhhh
Confidence 344555444556778999999999999877544332222333445566666544 56666666666666555
No 385
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.07 E-value=2e+02 Score=27.28 Aligned_cols=95 Identities=12% Similarity=0.155 Sum_probs=48.7
Q ss_pred chhHHHHHHHHHHhcCCCc-hhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHH
Q 015728 247 SEASDAGVRAFSALCSTET-NRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALV 325 (401)
Q Consensus 247 ~~~~~~a~~aL~~Ls~~~~-n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv 325 (401)
-+....++..|+-|+..+. ....+.. ..|..+++=+. .....+...|+.++..+...-.+...-. ...++
T Consensus 102 W~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslK---NlRS~VsraA~~t~~difs~ln~~i~~~-----ld~lv 172 (334)
T KOG2933|consen 102 WEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLK---NLRSAVSRAACMTLADIFSSLNNSIDQE-----LDDLV 172 (334)
T ss_pred HHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhc---ChHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH
Confidence 3455555566666664332 2222222 25555566565 3445677778888877776544333221 12233
Q ss_pred HHHHh-c--CChhHHHHHHHHHHHHhcC
Q 015728 326 KMVFR-V--SDHEGSENAINSLMMICCD 350 (401)
Q Consensus 326 ~~l~~-~--~~~~~~~~a~~~L~~l~~~ 350 (401)
..|+. . ++.-+.+.|-.+|..+..+
T Consensus 173 ~~Ll~ka~~dnrFvreda~kAL~aMV~~ 200 (334)
T KOG2933|consen 173 TQLLHKASQDNRFVREDAEKALVAMVNH 200 (334)
T ss_pred HHHHhhhcccchHHHHHHHHHHHHHHhc
Confidence 22222 2 2334677777777777655
No 386
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=51.02 E-value=11 Score=37.26 Aligned_cols=66 Identities=24% Similarity=0.424 Sum_probs=44.5
Q ss_pred CCCccccccc-ccccCCceEc--CccccccHHhHHHHHHcCCCCCCCCcccCC-CCCCCCcHHHHHHHHHHH
Q 015728 9 IPHLFRCPIS-LDLFTDPVTL--CTGQTYDRSSIEKWLAAGNLTCPVTMQTLH-DPSIVPNHTLRHLINQWL 76 (401)
Q Consensus 9 ~~~~~~C~iC-~~~~~~Pv~~--~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~-~~~~~~n~~l~~~i~~~~ 76 (401)
.++.++|++| ...|.+...+ .|..+||..||.+.+.. ..|+.|...-. ...+.++..++..+....
T Consensus 216 ~~e~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~--~~~~~c~~~~~~~~~~~~p~~~r~~~n~~~ 285 (448)
T KOG0314|consen 216 LPEGLQCPLCGKEVMLDAALLSKCCLKSFCDKCIRDALIS--KSMCVCGASNVLADDLLPPKTLRDTINRIL 285 (448)
T ss_pred CCccccCceecchhhHHHHHhhhhhcccCCcccccccccc--ccCCcchhhcccccccCCchhhHHHHHHHH
Confidence 5678999999 7788887765 59999999999887664 33555544322 224556666666555543
No 387
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=50.64 E-value=62 Score=34.51 Aligned_cols=138 Identities=16% Similarity=0.142 Sum_probs=89.0
Q ss_pred HHHHhc-CCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHH--HHHHHHHhcC
Q 015728 256 AFSALC-STETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVY--ALVKMVFRVS 332 (401)
Q Consensus 256 aL~~Ls-~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~--~Lv~~l~~~~ 332 (401)
+|++++ .++++...+++.|++..+.+.+.. -...+.+..+++.|.+++...+.+...... ..+. .+-.++.+..
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~--f~~~~~~~~il~~l~n~~~~~~~~~~~~~~-~~~~~~~f~~~~~~w~ 570 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLES--FDNEELHRKILGLLGNLAEVLELRELLMIF-EFIDFSVFKVLLNKWD 570 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhh--ccchhHHHHHHHHHHHHHHHhhhhhhhhHH-HHHHHHHHHHHHhhcc
Confidence 889998 588899999999999999999985 456788999999999999877665444311 1111 2222122223
Q ss_pred ChhHHHHHHHHHHHHhcCCH---------HHHHHH--------------HHcCcHHH-HHHHhhcCCCHHHHHHHHHHHH
Q 015728 333 DHEGSENAINSLMMICCDSL---------QAREEA--------------ICAGVLTQ-LLLLLQSQCSNRTKTKARMLLK 388 (401)
Q Consensus 333 ~~~~~~~a~~~L~~l~~~~~---------~~~~~~--------------~~~g~v~~-L~~ll~~~~~~~~~~~A~~~L~ 388 (401)
+.+....|..+|..+..+++ .+.+.+ .--..+.+ +..++.....+...--|.+.++
T Consensus 571 ~~ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~ 650 (699)
T KOG3665|consen 571 SIERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIK 650 (699)
T ss_pred hhhHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHH
Confidence 33566678888888766522 111111 11223333 5555555546677778888888
Q ss_pred HHHHhhHH
Q 015728 389 LLRSKWAE 396 (401)
Q Consensus 389 ~l~~~~~e 396 (401)
.+.++.++
T Consensus 651 ~~~~~~~~ 658 (699)
T KOG3665|consen 651 NVLEQNKE 658 (699)
T ss_pred HHHHcChh
Confidence 87775553
No 388
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=50.41 E-value=2.7e+02 Score=28.23 Aligned_cols=80 Identities=15% Similarity=0.218 Sum_probs=55.7
Q ss_pred HHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCH--------------hhHHHHHhCCCcHHHHHHHHHhcCC
Q 015728 268 KTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIE--------------NSKDALINNPNGVYALVKMVFRVSD 333 (401)
Q Consensus 268 ~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~--------------~~~~~~~~~~g~i~~Lv~~l~~~~~ 333 (401)
..+.+.+.|+.|+.+|.. ..+.+.+.+|+..|..+.... .--+++. .+..|..|++.|+....
T Consensus 56 ewL~~q~LI~~Li~~L~p--~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~-S~~~v~~Ll~~mL~~~~ 132 (475)
T PF04499_consen 56 EWLAEQNLIPRLIDLLSP--SYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLV-SEETVEKLLDIMLNSQG 132 (475)
T ss_pred HHHHHhCHHHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHh-ChHHHHHHHHHHhcCCC
Confidence 344568999999999984 456678888888887775421 1123443 77889999998885322
Q ss_pred hhHHHHHHHHHHHHhcC
Q 015728 334 HEGSENAINSLMMICCD 350 (401)
Q Consensus 334 ~~~~~~a~~~L~~l~~~ 350 (401)
...-.+++.++..|-..
T Consensus 133 ~s~lvn~v~IlieLIRk 149 (475)
T PF04499_consen 133 GSSLVNGVSILIELIRK 149 (475)
T ss_pred cchHHHHHHHHHHHHHh
Confidence 45777788888777643
No 389
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=50.38 E-value=2.2e+02 Score=30.05 Aligned_cols=155 Identities=12% Similarity=0.182 Sum_probs=98.8
Q ss_pred HHHHHHHHccC-CchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHH
Q 015728 235 LLREIISLVHH-NSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDA 313 (401)
Q Consensus 235 ~i~~Lv~lL~~-~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~ 313 (401)
++|.|..-+++ +...+..++..+-..+..-+ ...++.-++|.|-.+-.. ..+..++.+++.++..+. +.-.+..
T Consensus 390 IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~--tt~~~vkvn~L~c~~~l~-q~lD~~~ 464 (700)
T KOG2137|consen 390 ILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFK--TTNLYVKVNVLPCLAGLI-QRLDKAA 464 (700)
T ss_pred HHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhc--ccchHHHHHHHHHHHHHH-HHHHHHH
Confidence 45655555543 45688999988888885544 556677788888888543 567788999999999888 3334444
Q ss_pred HHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCH-----HHHHHHHHHHH
Q 015728 314 LINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSN-----RTKTKARMLLK 388 (401)
Q Consensus 314 ~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~-----~~~~~A~~~L~ 388 (401)
++ .-+.++.+ -.+..++...-..+.+..++...... .+++.-+.++|.++.+.-.+.-. ..-..-..++.
T Consensus 465 v~---d~~lpi~~-~~~~~dp~iv~~~~~i~~~l~~~~~~-g~ev~~~~VlPlli~ls~~~~L~~~Qy~~~m~~i~~ml~ 539 (700)
T KOG2137|consen 465 VL---DELLPILK-CIKTRDPAIVMGFLRIYEALALIIYS-GVEVMAENVLPLLIPLSVAPSLNGEQYNKYMSEIRLMLS 539 (700)
T ss_pred hH---HHHHHHHH-HhcCCCcHHHHHHHHHHHHHHhhccc-ceeeehhhhhhhhhhhhhcccccHHHHHHHHHHHHHHHh
Confidence 43 23455555 34566777777777777666544322 25777888899998887555211 12233344555
Q ss_pred HHHHhhHHhhc
Q 015728 389 LLRSKWAEELK 399 (401)
Q Consensus 389 ~l~~~~~e~~~ 399 (401)
.+.++|.+-++
T Consensus 540 ~ie~~~~~kLq 550 (700)
T KOG2137|consen 540 AIEKPRANKLQ 550 (700)
T ss_pred hhhHHHHHHhh
Confidence 56666665544
No 390
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=49.67 E-value=2.1e+02 Score=26.35 Aligned_cols=188 Identities=12% Similarity=0.123 Sum_probs=93.5
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc--c-CCchhHHHHHHHHHHhcCCCchhHH
Q 015728 193 FIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV--H-HNSEASDAGVRAFSALCSTETNRKT 269 (401)
Q Consensus 193 Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL--~-~~~~~~~~a~~aL~~Ls~~~~n~~~ 269 (401)
|-..|.+.+...|.+|...|..+....+ +..+.. .-+..|+..+ + ++......++.+|..|...+.
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp-----~~~L~~--~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~---- 72 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLP-----PDFLSR--QEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKN---- 72 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCC-----HhhccH--HHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcC----
Confidence 4456677788888888877777634333 111221 2245555544 1 344455555666666663322
Q ss_pred HHhcCcHHHHHHHHHhh---ccccchHHHHHHHHHHHHhCCHh-hHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHH
Q 015728 270 LVQEGAINGLIAYISNA---LTRERSLAAIAMARIEQLLAIEN-SKDALINNPNGVYALVKMVFRVSDHEGSENAINSLM 345 (401)
Q Consensus 270 iv~~G~v~~Lv~lL~~~---~~~~~~~~~~a~~~L~~La~~~~-~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~ 345 (401)
...+.+..+++-+... +.-....+......|..|..+.. .-..+ ..+.|..+++.+-...+|+.--.+-..+.
T Consensus 73 -~~~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~--~~~fv~~~i~~~~gEkDPRnLl~~F~l~~ 149 (262)
T PF14500_consen 73 -FSPESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSM--GDDFVYGFIQLIDGEKDPRNLLLSFKLLK 149 (262)
T ss_pred -CChhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhc--hhHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 1111122333332210 01122345556666666654322 11122 23456666664444445554443333333
Q ss_pred HHhcC---------------------------C------HHH----HHH-----HHHcCcHHHHHHHhhcCCCHHHHHHH
Q 015728 346 MICCD---------------------------S------LQA----REE-----AICAGVLTQLLLLLQSQCSNRTKTKA 383 (401)
Q Consensus 346 ~l~~~---------------------------~------~~~----~~~-----~~~~g~v~~L~~ll~~~~~~~~~~~A 383 (401)
.+... + ++. +.- ....-++|.|++=|.++ ++.+|.-+
T Consensus 150 ~i~~~~~~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~-~~~~K~D~ 228 (262)
T PF14500_consen 150 VILQEFDISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLEKLDST-SPSVKLDS 228 (262)
T ss_pred HHHHhcccchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCC-CcHHHHHH
Confidence 32111 0 011 111 11245677888888777 88899999
Q ss_pred HHHHHHHHHhhH
Q 015728 384 RMLLKLLRSKWA 395 (401)
Q Consensus 384 ~~~L~~l~~~~~ 395 (401)
...|..+...++
T Consensus 229 L~tL~~c~~~y~ 240 (262)
T PF14500_consen 229 LQTLKACIENYG 240 (262)
T ss_pred HHHHHHHHHHCC
Confidence 999988877554
No 391
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=49.54 E-value=69 Score=26.54 Aligned_cols=71 Identities=10% Similarity=0.104 Sum_probs=52.0
Q ss_pred CcHHHHHHHHHhhccccchHHHHHHHHHHHHhCC-Hh-hHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHh
Q 015728 274 GAINGLIAYISNALTRERSLAAIAMARIEQLLAI-EN-SKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMIC 348 (401)
Q Consensus 274 G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~-~~-~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~ 348 (401)
.++..|.+-|. ++++.++-.|+.+|..+..+ +. -..++ .+.+.+..|++++....++.+++.++..+.+-+
T Consensus 41 ~a~ral~krl~---~~n~~vql~AL~LLe~~vkNCG~~fh~ev-as~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 113 (142)
T cd03569 41 YAMRALKKRLL---SKNPNVQLYALLLLESCVKNCGTHFHDEV-ASREFMDELKDLIKTTKNEEVRQKILELIQAWA 113 (142)
T ss_pred HHHHHHHHHHc---CCChHHHHHHHHHHHHHHHHCCHHHHHHH-hhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHH
Confidence 36667777777 67788888999999988875 33 33445 478899999995444456678888888886654
No 392
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=49.08 E-value=4.7 Score=38.01 Aligned_cols=44 Identities=14% Similarity=0.131 Sum_probs=29.3
Q ss_pred cccccccccccCCceEc----Ccc--ccccHHhHHHHHHcCCCCCCCCccc
Q 015728 12 LFRCPISLDLFTDPVTL----CTG--QTYDRSSIEKWLAAGNLTCPVTMQT 56 (401)
Q Consensus 12 ~~~C~iC~~~~~~Pv~~----~Cg--h~fc~~Ci~~~~~~~~~~CP~c~~~ 56 (401)
.-.||+|+..-.--+.. .=| +-+|..|-.+|-- ....||.|+..
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~-~R~~C~~Cg~~ 233 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHY-VRVKCSHCEES 233 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccc-cCccCCCCCCC
Confidence 45899999854332221 234 4558999888866 34569999874
No 393
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=49.07 E-value=8.3 Score=31.47 Aligned_cols=33 Identities=18% Similarity=0.469 Sum_probs=25.5
Q ss_pred cccccccccccCC--ceE-cCcc------ccccHHhHHHHHH
Q 015728 12 LFRCPISLDLFTD--PVT-LCTG------QTYDRSSIEKWLA 44 (401)
Q Consensus 12 ~~~C~iC~~~~~~--Pv~-~~Cg------h~fc~~Ci~~~~~ 44 (401)
...|.||.+...+ -|. ++|| |-||..|+.+|-+
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence 5789999997776 554 4666 5699999999954
No 394
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=48.69 E-value=24 Score=24.13 Aligned_cols=30 Identities=13% Similarity=0.139 Sum_probs=19.0
Q ss_pred CCCCCCCcccCCCCCCCCcHHHHHHHHHHH
Q 015728 47 NLTCPVTMQTLHDPSIVPNHTLRHLINQWL 76 (401)
Q Consensus 47 ~~~CP~c~~~~~~~~~~~n~~l~~~i~~~~ 76 (401)
+.+||+|++.+......-+...+.+.+.-+
T Consensus 8 H~HC~VCg~aIp~de~~CSe~C~eil~ker 37 (64)
T COG4068 8 HRHCVVCGKAIPPDEQVCSEECGEILNKER 37 (64)
T ss_pred CccccccCCcCCCccchHHHHHHHHHHHHH
Confidence 577999999887765444444555544433
No 395
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=48.68 E-value=1.5e+02 Score=24.16 Aligned_cols=72 Identities=15% Similarity=0.116 Sum_probs=55.6
Q ss_pred hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcC-chhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHH
Q 015728 93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRES-PPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQK 171 (401)
Q Consensus 93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~-~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~ 171 (401)
+.++.+.+-|. .+++..+..|+..|-.+.+.. +.....+...+++..|+.++++.... +.+++.++. ++.
T Consensus 37 ~a~r~l~krl~--~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~------~~Vk~kil~-li~ 107 (133)
T smart00288 37 DAVRLLKKRLN--NKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPL------PLVKKRILE-LIQ 107 (133)
T ss_pred HHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCc------HHHHHHHHH-HHH
Confidence 56777777676 357889999999999999884 45778888889999999999876543 448888888 665
Q ss_pred hh
Q 015728 172 LL 173 (401)
Q Consensus 172 ~l 173 (401)
.-
T Consensus 108 ~W 109 (133)
T smart00288 108 EW 109 (133)
T ss_pred HH
Confidence 43
No 396
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=47.69 E-value=14 Score=24.74 Aligned_cols=39 Identities=13% Similarity=0.093 Sum_probs=19.6
Q ss_pred ccccccccCCc-------eE---cCccccccHHhHHHHHHcCCCCCCCCc
Q 015728 15 CPISLDLFTDP-------VT---LCTGQTYDRSSIEKWLAAGNLTCPVTM 54 (401)
Q Consensus 15 C~iC~~~~~~P-------v~---~~Cgh~fc~~Ci~~~~~~~~~~CP~c~ 54 (401)
|--|...|.++ .. -.|++.||..|= -+..+.-..||-|.
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD-~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCD-VFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHH-HTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcC-hhhhccccCCcCCC
Confidence 45566666664 12 248999999992 23333446799883
No 397
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=47.65 E-value=1.6e+02 Score=24.93 Aligned_cols=39 Identities=10% Similarity=0.144 Sum_probs=28.9
Q ss_pred hhhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhh
Q 015728 92 IDSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASN 131 (401)
Q Consensus 92 ~~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~ 131 (401)
++....|.+.|+.. .+...++++++.|..+-.-+|...+
T Consensus 9 P~LL~~L~~iLk~e-~s~~iR~E~lr~lGilGALDP~~~k 47 (160)
T PF11865_consen 9 PELLDILLNILKTE-QSQSIRREALRVLGILGALDPYKHK 47 (160)
T ss_pred HHHHHHHHHHHHhC-CCHHHHHHHHHHhhhccccCcHHHh
Confidence 35667777777766 4588999999999888877775433
No 398
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=47.46 E-value=13 Score=38.93 Aligned_cols=43 Identities=21% Similarity=0.447 Sum_probs=30.5
Q ss_pred CcccccccccccCCceE--cCccccccHHhHHHHHHcCCCCCCC-Cc
Q 015728 11 HLFRCPISLDLFTDPVT--LCTGQTYDRSSIEKWLAAGNLTCPV-TM 54 (401)
Q Consensus 11 ~~~~C~iC~~~~~~Pv~--~~Cgh~fc~~Ci~~~~~~~~~~CP~-c~ 54 (401)
..|.|.+|.--.+---. ..|||....+|...||+.|. .||. |+
T Consensus 1027 ~~~~C~~C~l~V~gss~~Cg~C~Hv~H~sc~~eWf~~gd-~CpsGCG 1072 (1081)
T KOG0309|consen 1027 FTFQCAICHLAVRGSSNFCGTCGHVGHTSCMMEWFRTGD-VCPSGCG 1072 (1081)
T ss_pred ceeeeeeEeeEeeccchhhccccccccHHHHHHHHhcCC-cCCCCCC
Confidence 35678887765544333 35999999999999999654 6876 44
No 399
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=47.24 E-value=3.8e+02 Score=28.54 Aligned_cols=134 Identities=14% Similarity=0.149 Sum_probs=84.6
Q ss_pred CChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHH-hhcCCHHHHHHHHHHHHHH
Q 015728 137 GFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVL-FEHGSCSIKKRLCHLVEVI 215 (401)
Q Consensus 137 G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~-L~~~~~~~~~~aa~~L~~l 215 (401)
.-|.-|+.+|.|.+.. +.+++-..+..++..+.+. . .+..||+. +++++. .++.+|..+
T Consensus 4 ~~~~~l~~~l~s~~~~--------~~~~~~~~~~~~~~~~~~~---~-----l~~~l~~y~~~t~s~----~~~~il~~~ 63 (668)
T PF04388_consen 4 ASITELLSLLESNDLS--------VLEEIKALLQELLNSDREP---W-----LVNGLVDYYLSTNSQ----RALEILVGV 63 (668)
T ss_pred ccHHHHHHHhcCCchh--------hHHHHHHHHHHHhhccchH---H-----HHHHHHHHHhhcCcH----HHHHHHHhc
Confidence 4578899999988754 6777777333344332221 1 25666664 555555 444556544
Q ss_pred HhcccchhhhhhhhccchHHHHHHHHHccCCchhHHHHHHHHHHhcC-CCchhHHHHhcCcHHHHHHHHHhhccccchHH
Q 015728 216 ISSSHETKELCCKLGKDDRLLREIISLVHHNSEASDAGVRAFSALCS-TETNRKTLVQEGAINGLIAYISNALTRERSLA 294 (401)
Q Consensus 216 ~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~a~~aL~~Ls~-~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~ 294 (401)
..-. ...++..|=..+. ....+..++..|..+.. .+.-...|++...++.|++.|.. +.+..+.
T Consensus 64 -~~P~-----------~K~~~~~l~~~~~-~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~--D~~~~~~ 128 (668)
T PF04388_consen 64 -QEPH-----------DKHLFDKLNDYFV-KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQF--DTSITVV 128 (668)
T ss_pred -CCcc-----------HHHHHHHHHHHHc-CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhh--cccHHHH
Confidence 2211 0133344444443 33568889999998874 67778888999999999999985 5666666
Q ss_pred HHHHHHHHHHh
Q 015728 295 AIAMARIEQLL 305 (401)
Q Consensus 295 ~~a~~~L~~La 305 (401)
..|+.+|..|-
T Consensus 129 ~~al~~LimlL 139 (668)
T PF04388_consen 129 SSALLVLIMLL 139 (668)
T ss_pred HHHHHHHHHHh
Confidence 67777766554
No 400
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=47.13 E-value=1.9e+02 Score=25.08 Aligned_cols=114 Identities=18% Similarity=0.152 Sum_probs=67.2
Q ss_pred cCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCC----c---------------HHHHHHHHHhcCC
Q 015728 273 EGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPN----G---------------VYALVKMVFRVSD 333 (401)
Q Consensus 273 ~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g----~---------------i~~Lv~~l~~~~~ 333 (401)
.+.-+.|+..+-. +++..++..|+.+|..|-.+....-....+.. . =..|+..+.+..+
T Consensus 38 ~~~~~sLlt~il~--Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~ 115 (182)
T PF13251_consen 38 RPATPSLLTCILK--DPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKS 115 (182)
T ss_pred CCCCcchhHHHHc--CCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3355566666654 78888999999999988765433322222111 1 1123333334445
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHH----HhhcCCCHHHHHHHHHHHHHHHH
Q 015728 334 HEGSENAINSLMMICCDSLQAREEAICAGVLTQLLL----LLQSQCSNRTKTKARMLLKLLRS 392 (401)
Q Consensus 334 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~----ll~~~~~~~~~~~A~~~L~~l~~ 392 (401)
....-..+++|..|..+.+-.| +..|.++.++. ++.+. ++.++..+...+..+..
T Consensus 116 ~~~l~q~lK~la~Lv~~tPY~r---L~~~ll~~~v~~v~~~l~~~-d~~v~v~~l~~~~~l~s 174 (182)
T PF13251_consen 116 PPVLTQLLKCLAVLVQATPYHR---LPPGLLTEVVTQVRPLLRHR-DPNVRVAALSCLGALLS 174 (182)
T ss_pred cHHHHHHHHHHHHHHccCChhh---cCHhHHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHc
Confidence 5666778888888887766333 12355555444 44454 67777777777776654
No 401
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=47.06 E-value=1.1e+02 Score=25.46 Aligned_cols=71 Identities=8% Similarity=0.182 Sum_probs=54.5
Q ss_pred CchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHccC--CchhHHHHHHHHHHhc
Q 015728 188 SKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHH--NSEASDAGVRAFSALC 261 (401)
Q Consensus 188 g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~--~~~~~~~a~~aL~~Ls 261 (401)
.++..|...|.++++.++..|..+|..+ ..+.. +.+...|+. ..++..|++++.. +..++...+..|...+
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~-vkNCG-~~fh~evas-k~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~ 109 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDAC-AENCG-KRFHQEVAS-RDFTQELKKLINDRVHPTVKEKLREVVKQWA 109 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHH-HHHCC-HHHHHHHhh-HHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 3577888888899999999999888888 44331 356667765 4899999999943 5568888888888776
No 402
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=46.76 E-value=18 Score=38.16 Aligned_cols=51 Identities=16% Similarity=0.288 Sum_probs=37.4
Q ss_pred CCCccccccccc--ccCCceEcCcccc-----ccHHhHHHHHHc-CCCCCCCCcccCCC
Q 015728 9 IPHLFRCPISLD--LFTDPVTLCTGQT-----YDRSSIEKWLAA-GNLTCPVTMQTLHD 59 (401)
Q Consensus 9 ~~~~~~C~iC~~--~~~~Pv~~~Cgh~-----fc~~Ci~~~~~~-~~~~CP~c~~~~~~ 59 (401)
-.++-.|.||.. .--+|..-||.++ ..+.|+.+|..- +...|-.|+.++.-
T Consensus 9 N~d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~F 67 (1175)
T COG5183 9 NEDKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKF 67 (1175)
T ss_pred CccchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeee
Confidence 346688999875 4457877777653 367999999985 45779999987643
No 403
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=46.54 E-value=1.9e+02 Score=29.95 Aligned_cols=96 Identities=15% Similarity=0.192 Sum_probs=56.7
Q ss_pred HHHHHHHHHc--cCCchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhH
Q 015728 234 RLLREIISLV--HHNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSK 311 (401)
Q Consensus 234 g~i~~Lv~lL--~~~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~ 311 (401)
|++..|++.- +++..++++|+-||.-+|..+. ..++..+++|+. +-+.-++.-.+-+|...|.+...+
T Consensus 551 ~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~--------~~lv~tvelLs~--shN~hVR~g~AvaLGiacag~G~~ 620 (926)
T COG5116 551 GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR--------DLLVGTVELLSE--SHNFHVRAGVAVALGIACAGTGDK 620 (926)
T ss_pred hhHhhhheeecccCchHHHHHHHHheeeeEecCc--------chhhHHHHHhhh--ccchhhhhhhHHHhhhhhcCCccH
Confidence 6777777763 3566799999999988886543 356777888875 345556666666666655543333
Q ss_pred HHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 015728 312 DALINNPNGVYALVKMVFRVSDHEGSENAINSLMMI 347 (401)
Q Consensus 312 ~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l 347 (401)
..+ . +++.|..+...-+++.|.-++..|
T Consensus 621 ~a~-------d-iL~~L~~D~~dfVRQ~AmIa~~mI 648 (926)
T COG5116 621 VAT-------D-ILEALMYDTNDFVRQSAMIAVGMI 648 (926)
T ss_pred HHH-------H-HHHHHhhCcHHHHHHHHHHHHHHH
Confidence 222 1 222234444445555555555443
No 404
>PLN03205 ATR interacting protein; Provisional
Probab=46.12 E-value=97 Score=30.37 Aligned_cols=116 Identities=18% Similarity=0.264 Sum_probs=68.0
Q ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHhCC---HhhH-HHHHhCCCcHHHHHHHHHh----cCChhHHHHHHHHHHHH
Q 015728 276 INGLIAYISNALTRERSLAAIAMARIEQLLAI---ENSK-DALINNPNGVYALVKMVFR----VSDHEGSENAINSLMMI 347 (401)
Q Consensus 276 v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~---~~~~-~~~~~~~g~i~~Lv~~l~~----~~~~~~~~~a~~~L~~l 347 (401)
+++|+.|-. -++.-+...++.+|..+-.+ ++.| .+-. +.. -..|.+++.+ .....++-.|+++.--|
T Consensus 325 lEaLLdLC~---v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~-~~N-WvsLfElm~QiAv~~TEE~VrLEAvSIMnVI 399 (652)
T PLN03205 325 VEPLLDLCK---AETAVLVHRSLRVLHVLLEHICGDEKRFEASW-DAN-WHSLFELMNQIASIRTEEDVKLEALSIMNII 399 (652)
T ss_pred HHHHHHHHh---cCchhhhHHHHHHHHHHHHHHhCCcccccccc-ccc-HHHHHHHHHHHHhccchhheeeehhhhhHHh
Confidence 344555544 44555666666665544431 1111 1111 222 2234443322 23334555566665444
Q ss_pred h--cCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHHh
Q 015728 348 C--CDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAEE 397 (401)
Q Consensus 348 ~--~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e~ 397 (401)
. ++.-..|+.+...-++..+-+||+....-.+|+.|..+|.+|-. ||--
T Consensus 400 lmssna~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLN-Cpkl 450 (652)
T PLN03205 400 VMSTDAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLN-CPKL 450 (652)
T ss_pred hhccchhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHc-CcHH
Confidence 3 33235677777888899999999877688999999999999987 7653
No 405
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=46.05 E-value=11 Score=39.32 Aligned_cols=49 Identities=18% Similarity=0.281 Sum_probs=36.1
Q ss_pred CCCcccccccccccCCce--------E--cCccccc--------------------cHHhHHHHHHc-------CCCCCC
Q 015728 9 IPHLFRCPISLDLFTDPV--------T--LCTGQTY--------------------DRSSIEKWLAA-------GNLTCP 51 (401)
Q Consensus 9 ~~~~~~C~iC~~~~~~Pv--------~--~~Cgh~f--------------------c~~Ci~~~~~~-------~~~~CP 51 (401)
+|+.-+|+-|++.+.||- + +.||.+| |..|..+|-.. ....||
T Consensus 98 ~pD~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~aCp 177 (750)
T COG0068 98 PPDAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPIACP 177 (750)
T ss_pred CCchhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccccccCc
Confidence 567789999999887753 2 4577765 88898887543 357799
Q ss_pred CCcccC
Q 015728 52 VTMQTL 57 (401)
Q Consensus 52 ~c~~~~ 57 (401)
.|+-.+
T Consensus 178 ~CGP~~ 183 (750)
T COG0068 178 KCGPHL 183 (750)
T ss_pred ccCCCe
Confidence 998754
No 406
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=45.47 E-value=4.2e+02 Score=28.49 Aligned_cols=112 Identities=12% Similarity=0.115 Sum_probs=65.2
Q ss_pred hHHHHHHHHHc-cC-----Cch---hHHHHHHHHHHhcC---CCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHH
Q 015728 233 DRLLREIISLV-HH-----NSE---ASDAGVRAFSALCS---TETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMAR 300 (401)
Q Consensus 233 ~g~i~~Lv~lL-~~-----~~~---~~~~a~~aL~~Ls~---~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~ 300 (401)
+|+++.++..| +. +.. ..+-|++.+.++.. -++...-+.+.=+++.++..++ +...-++..|+..
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~---s~ygfL~Srace~ 483 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFR---SNYGFLKSRACEF 483 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhc---CcccchHHHHHHH
Confidence 59999999999 21 112 33444444444443 2223444455556777777777 6777889999999
Q ss_pred HHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCC
Q 015728 301 IEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDS 351 (401)
Q Consensus 301 L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~ 351 (401)
+..+..+-....... .+...... .+++++-.++-.|+-||.-+-.++
T Consensus 484 is~~eeDfkd~~ill---~aye~t~n-cl~nn~lpv~ieAalAlq~fi~~~ 530 (970)
T COG5656 484 ISTIEEDFKDNGILL---EAYENTHN-CLKNNHLPVMIEAALALQFFIFNE 530 (970)
T ss_pred HHHHHHhcccchHHH---HHHHHHHH-HHhcCCcchhhhHHHHHHHHHhch
Confidence 998854322222221 12233334 344455456666777777766654
No 407
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=45.40 E-value=23 Score=30.56 Aligned_cols=31 Identities=16% Similarity=0.195 Sum_probs=17.7
Q ss_pred CCCCCCCCcccCCCCCC-CCcHHHHHHHHHHH
Q 015728 46 GNLTCPVTMQTLHDPSI-VPNHTLRHLINQWL 76 (401)
Q Consensus 46 ~~~~CP~c~~~~~~~~~-~~n~~l~~~i~~~~ 76 (401)
-.|+||.|+..+...+- .....+...++.+.
T Consensus 131 ~~F~Cp~Cg~~L~~~d~s~~i~~l~~~i~~l~ 162 (176)
T COG1675 131 LGFTCPKCGEDLEEYDSSEEIEELESELDELE 162 (176)
T ss_pred hCCCCCCCCchhhhccchHHHHHHHHHHHHHH
Confidence 34899999998865322 22233444444443
No 408
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=45.29 E-value=29 Score=29.36 Aligned_cols=14 Identities=36% Similarity=0.425 Sum_probs=11.7
Q ss_pred CCCCCCCCcccCCC
Q 015728 46 GNLTCPVTMQTLHD 59 (401)
Q Consensus 46 ~~~~CP~c~~~~~~ 59 (401)
..|.||.|+..+..
T Consensus 127 ~~F~Cp~Cg~~L~~ 140 (158)
T TIGR00373 127 LNFTCPRCGAMLDY 140 (158)
T ss_pred cCCcCCCCCCEeee
Confidence 47999999998865
No 409
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=45.17 E-value=2.3e+02 Score=32.84 Aligned_cols=112 Identities=16% Similarity=0.262 Sum_probs=66.1
Q ss_pred cCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHH
Q 015728 136 LGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVI 215 (401)
Q Consensus 136 ~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l 215 (401)
.+.+..++..|..+. ..++-.|+. .|..+..-|.. ++.....-..+-..+-..+..+|+.|...++..
T Consensus 815 D~yLk~Il~~l~e~~--------ialRtkAlK-clS~ive~Dp~---vL~~~dvq~~Vh~R~~DssasVREAaldLvGrf 882 (1692)
T KOG1020|consen 815 DPYLKLILSVLGENA--------IALRTKALK-CLSMIVEADPS---VLSRPDVQEAVHGRLNDSSASVREAALDLVGRF 882 (1692)
T ss_pred HHHHHHHHHHhcCch--------HHHHHHHHH-HHHHHHhcChH---hhcCHHHHHHHHHhhccchhHHHHHHHHHHhhh
Confidence 355677777777554 448999999 66666644432 222222222233344456778999999999876
Q ss_pred HhcccchhhhhhhhccchHHHHHHH-HHccCCchhHHHHHHHHHHhcCCCchhH
Q 015728 216 ISSSHETKELCCKLGKDDRLLREII-SLVHHNSEASDAGVRAFSALCSTETNRK 268 (401)
Q Consensus 216 ~s~~~~~~~~~~~i~~~~g~i~~Lv-~lL~~~~~~~~~a~~aL~~Ls~~~~n~~ 268 (401)
+.... +.-..+ -..+. ++++.+..+++.+.+.|+.+|....+-.
T Consensus 883 vl~~~---e~~~qy------Y~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~ 927 (1692)
T KOG1020|consen 883 VLSIP---ELIFQY------YDQIIERILDTGVSVRKRVIKILRDICEETPDFS 927 (1692)
T ss_pred hhccH---HHHHHH------HHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChh
Confidence 33332 211111 11112 2335566799999999999996444333
No 410
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=45.17 E-value=73 Score=24.22 Aligned_cols=57 Identities=11% Similarity=0.046 Sum_probs=42.3
Q ss_pred cChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhc
Q 015728 107 ATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLL 174 (401)
Q Consensus 107 ~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~ 174 (401)
.....|-.++..|+++..... -..+...+++..+...|++.++. +.-+|+. .|..|+
T Consensus 15 p~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~Dsy--------VYL~aI~-~L~~La 71 (92)
T PF10363_consen 15 PLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSY--------VYLNAIK-GLAALA 71 (92)
T ss_pred CCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCch--------HHHHHHH-HHHHHH
Confidence 456788899999999998776 22222356788888888888876 8888888 677666
No 411
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.68 E-value=51 Score=26.42 Aligned_cols=82 Identities=13% Similarity=0.246 Sum_probs=42.2
Q ss_pred ccccHHhHHHHHHcCCCCCCCCcccCCCCCCCCcHHHHHHHHHHHHhCCCCCCCCCC---------CCChhhHHHHHHhh
Q 015728 32 QTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLRHLINQWLQMGGGQHFDPNY---------LATIDSLSTLKHSL 102 (401)
Q Consensus 32 h~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~n~~l~~~i~~~~~~~~~~~~~~~~---------~~~~~~~~~l~~~l 102 (401)
..||..|-..-.. .||.|..++.-... + +...... ..|.|++ |-.+.-++...+++
T Consensus 28 eafcskcgeati~----qcp~csasirgd~~-----v----egvlglg--~dye~psfchncgs~fpwterkiaga~elv 92 (160)
T COG4306 28 EAFCSKCGEATIT----QCPICSASIRGDYY-----V----EGVLGLG--GDYEPPSFCHNCGSRFPWTERKIAGAVELV 92 (160)
T ss_pred HHHHhhhchHHHh----cCCccCCcccccce-----e----eeeeccC--CCCCCcchhhcCCCCCCcHHHHHhHHHHHH
Confidence 4688888765444 59999776643211 1 1122223 2233333 33344455455555
Q ss_pred hhhh-cChHHHHHHHHHHHHHHhcCch
Q 015728 103 QSHE-ATLETKLQIVQKIHVVLRESPP 128 (401)
Q Consensus 103 ~~~~-~~~~~~~~a~~~L~~l~~~~~~ 128 (401)
..+. -+++++.+=-..|..|..++|+
T Consensus 93 ea~~~l~pdevqqf~tdlt~ltkdspk 119 (160)
T COG4306 93 EAGENLNPDEVQQFRTDLTDLTKDSPK 119 (160)
T ss_pred HccccCCHHHHHHHHhhHHHHhhcCch
Confidence 4443 2455555555666666666653
No 412
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=44.60 E-value=16 Score=38.72 Aligned_cols=15 Identities=20% Similarity=0.485 Sum_probs=7.5
Q ss_pred ccccccHHhHHHHHH
Q 015728 30 TGQTYDRSSIEKWLA 44 (401)
Q Consensus 30 Cgh~fc~~Ci~~~~~ 44 (401)
|-|.|...||.+|-.
T Consensus 213 CYhVFHl~CI~~WAr 227 (950)
T KOG1952|consen 213 CYHVFHLNCIKKWAR 227 (950)
T ss_pred hhhhhhHHHHHHHHH
Confidence 445555555555543
No 413
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=44.59 E-value=32 Score=23.82 Aligned_cols=14 Identities=21% Similarity=0.458 Sum_probs=8.8
Q ss_pred CCCCCCCcccCCCC
Q 015728 47 NLTCPVTMQTLHDP 60 (401)
Q Consensus 47 ~~~CP~c~~~~~~~ 60 (401)
+++||.|+.++..+
T Consensus 3 HkHC~~CG~~Ip~~ 16 (59)
T PF09889_consen 3 HKHCPVCGKPIPPD 16 (59)
T ss_pred CCcCCcCCCcCCcc
Confidence 45677777666543
No 414
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=44.11 E-value=17 Score=28.64 Aligned_cols=15 Identities=13% Similarity=0.335 Sum_probs=10.5
Q ss_pred CCCCCCCCcccCCCC
Q 015728 46 GNLTCPVTMQTLHDP 60 (401)
Q Consensus 46 ~~~~CP~c~~~~~~~ 60 (401)
.+..||.|+..+...
T Consensus 25 ~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 25 DPIVCPKCGTEFPPE 39 (108)
T ss_pred CCccCCCCCCccCcc
Confidence 456699998876553
No 415
>KOG3476 consensus Microtubule-associated protein CRIPT [Cytoskeleton]
Probab=43.69 E-value=4.4 Score=29.97 Aligned_cols=37 Identities=24% Similarity=0.429 Sum_probs=27.9
Q ss_pred cccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCC
Q 015728 12 LFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLH 58 (401)
Q Consensus 12 ~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~ 58 (401)
.-.|-||.+....| |..||..|-... ..|..|++.+.
T Consensus 54 ~~kC~iCk~~vHQ~-----GshYC~tCAY~K-----giCAMCGKki~ 90 (100)
T KOG3476|consen 54 LAKCRICKQLVHQP-----GSHYCQTCAYKK-----GICAMCGKKIL 90 (100)
T ss_pred cchhHHHHHHhcCC-----cchhHhHhhhhh-----hHHHHhhhHhh
Confidence 35799999988887 656999997643 34889987654
No 416
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.48 E-value=22 Score=28.82 Aligned_cols=39 Identities=10% Similarity=0.005 Sum_probs=24.7
Q ss_pred CCCCcccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccC
Q 015728 8 TIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTL 57 (401)
Q Consensus 8 ~~~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~ 57 (401)
.+.++-+|.||+..-+ .=.||| -|.+|-.+ .|..|+..+
T Consensus 61 Gv~ddatC~IC~KTKF---ADG~GH-~C~YCq~r-------~CARCGGrv 99 (169)
T KOG3799|consen 61 GVGDDATCGICHKTKF---ADGCGH-NCSYCQTR-------FCARCGGRV 99 (169)
T ss_pred ccCcCcchhhhhhccc---ccccCc-ccchhhhh-------HHHhcCCee
Confidence 4577889999997322 125888 46677544 355665444
No 417
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=43.43 E-value=3.1e+02 Score=29.21 Aligned_cols=130 Identities=12% Similarity=0.100 Sum_probs=83.9
Q ss_pred CCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc--CCchhHHHHHHHHHHhcCCCchhHHHHhcCcHH
Q 015728 200 GSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH--HNSEASDAGVRAFSALCSTETNRKTLVQEGAIN 277 (401)
Q Consensus 200 ~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~--~~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~ 277 (401)
++++.+..|...|..+.+... +++. .-+|.|+..++ +++..+-+|+-.|..+..+-.+- ++. .-.
T Consensus 908 sd~~lq~aA~l~L~klMClS~---~fc~------ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~---~de-~t~ 974 (1128)
T COG5098 908 SDEELQVAAYLSLYKLMCLSF---EFCS------EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTT---ADE-HTH 974 (1128)
T ss_pred CCHHHHHHHHHHHHHHHHHhH---HHHH------HHHHHHHHHHhhCCCcceeccceeeccccceehhhh---hHH-HHH
Confidence 467888888888888755544 4443 23699999993 56678888888888776432221 110 122
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCC
Q 015728 278 GLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDS 351 (401)
Q Consensus 278 ~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~ 351 (401)
.|.+-|. +.+..++..++.++..|-.. |..++ .|-.+.++. ++.+.+.+..+.|-..+-.+++.+
T Consensus 975 yLyrrL~---De~~~V~rtclmti~fLila--gq~KV---KGqlg~ma~-~L~deda~Isdmar~fft~~a~Kd 1039 (1128)
T COG5098 975 YLYRRLG---DEDADVRRTCLMTIHFLILA--GQLKV---KGQLGKMAL-LLTDEDAEISDMARHFFTQIAKKD 1039 (1128)
T ss_pred HHHHHhc---chhhHHHHHHHHHHHHHHHc--cceee---ccchhhhHh-hccCCcchHHHHHHHHHHHHHhcc
Confidence 3444444 67778999999999988643 22222 355666666 566666677777777777776654
No 418
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=43.02 E-value=8.5 Score=36.36 Aligned_cols=45 Identities=16% Similarity=0.262 Sum_probs=30.1
Q ss_pred CcccccccccccCCceE-c--Ccc--ccccHHhHHHHHHcCCCCCCCCccc
Q 015728 11 HLFRCPISLDLFTDPVT-L--CTG--QTYDRSSIEKWLAAGNLTCPVTMQT 56 (401)
Q Consensus 11 ~~~~C~iC~~~~~~Pv~-~--~Cg--h~fc~~Ci~~~~~~~~~~CP~c~~~ 56 (401)
..-.||+|+..-.--+. . .=| +-+|..|-..|-- ....||.|+..
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~-~R~~C~~Cg~~ 235 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHV-VRVKCSNCEQS 235 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccc-cCccCCCCCCC
Confidence 35789999986433332 1 234 4458999888866 34569999863
No 419
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=42.65 E-value=25 Score=39.35 Aligned_cols=65 Identities=15% Similarity=0.084 Sum_probs=36.7
Q ss_pred cccccccccccCCceEcCcccc-----ccHHhHHHHHHc--CCCCCCCCcccCCCC---CCCCcHHHHHHHHHHH
Q 015728 12 LFRCPISLDLFTDPVTLCTGQT-----YDRSSIEKWLAA--GNLTCPVTMQTLHDP---SIVPNHTLRHLINQWL 76 (401)
Q Consensus 12 ~~~C~iC~~~~~~Pv~~~Cgh~-----fc~~Ci~~~~~~--~~~~CP~c~~~~~~~---~~~~n~~l~~~i~~~~ 76 (401)
.++||-|.........-.||.. +|..|=...-.. +...||.|+.++... .+.....+....+...
T Consensus 667 ~rkCPkCG~~t~~~fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv~~~~~~i~~~~~~~~A~~~~g 741 (1337)
T PRK14714 667 RRRCPSCGTETYENRCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELTPYQRRTINVKEEYRSALENVG 741 (1337)
T ss_pred EEECCCCCCccccccCcccCCcCCCceeCccCCCccCCCccccccCCCCCCcccccceEEecHHHHHHHHHHHhC
Confidence 4789999886544433448854 388775432111 123699999877543 2333344444444443
No 420
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=42.61 E-value=2.1e+02 Score=28.69 Aligned_cols=102 Identities=14% Similarity=-0.039 Sum_probs=56.8
Q ss_pred hHHHHHHH-HHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhc-CChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHH
Q 015728 292 SLAAIAMA-RIEQLLAIENSKDALINNPNGVYALVKMVFRV-SDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLL 369 (401)
Q Consensus 292 ~~~~~a~~-~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ 369 (401)
+-++.|+. ....++.+..+-+.-. ....+..+++ +++. .+...++-|+++|.-+|.+-+. +-.--.+-+|..+++
T Consensus 302 ~~~k~alsel~~m~~e~sfsvWeq~-f~~iL~~l~E-vL~d~~~~~~k~laLrvL~~ml~~Q~~-~l~DstE~ai~K~Le 378 (516)
T KOG2956|consen 302 SERKEALSELPKMLCEGSFSVWEQH-FAEILLLLLE-VLSDSEDEIIKKLALRVLREMLTNQPA-RLFDSTEIAICKVLE 378 (516)
T ss_pred hHHHHHHHHHHHHHHccchhHHHHH-HHHHHHHHHH-HHccchhhHHHHHHHHHHHHHHHhchH-hhhchHHHHHHHHHH
Confidence 34445555 4555666544433311 1123445667 4555 5667888899999988876432 212223445556666
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHHhhHH
Q 015728 370 LLQSQCSNRTKTKARMLLKLLRSKWAE 396 (401)
Q Consensus 370 ll~~~~~~~~~~~A~~~L~~l~~~~~e 396 (401)
.-.+......+..+-..++.++.|.|+
T Consensus 379 aa~ds~~~v~~~Aeed~~~~las~~P~ 405 (516)
T KOG2956|consen 379 AAKDSQDEVMRVAEEDCLTTLASHLPL 405 (516)
T ss_pred HHhCCchhHHHHHHHHHHHHHHhhCch
Confidence 554443445666666667777776664
No 421
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=42.50 E-value=3e+02 Score=26.84 Aligned_cols=135 Identities=7% Similarity=0.059 Sum_probs=62.4
Q ss_pred cChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhc-cCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcc
Q 015728 107 ATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLF-GKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLN 185 (401)
Q Consensus 107 ~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~-s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~ 185 (401)
++...+.+|..-|+.+++.-++.-..+. .+.|..++.-.. ++.. +.+..+.|+. ++..|+......+.=+.
T Consensus 223 d~~TrR~AA~dfl~~L~~~~~~~v~~i~-~~~i~~~l~~y~~~~~~------~w~~KD~Al~-Li~ala~k~~t~~~Gvt 294 (370)
T PF08506_consen 223 DSDTRRRAACDFLRSLCKKFEKQVTSIL-MQYIQQLLQQYASNPSN------NWRSKDGALY-LIGALASKGSTTKSGVT 294 (370)
T ss_dssp ---SHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-TTT-------HHHHHHHHH-HHHHHHBSS--BTTB-S
T ss_pred ccCCcHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHhhCCcc------cHHHHHHHHH-HHHHHHhhhccccCCcc
Confidence 3445677888888899865332211121 122222222111 2222 2456666777 77777643322111010
Q ss_pred cC----CchHHHH----HHhh---cCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhHHHH
Q 015728 186 EE----SKMESFI----VLFE---HGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEASDAG 253 (401)
Q Consensus 186 ~~----g~i~~Lv----~~L~---~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~a 253 (401)
+. +...-+. .-|+ +..+-.+..|...+... ... -.+..+ .+++|.++..|. ++.-+...|
T Consensus 295 ~~~~~v~v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~F-r~~----l~~~~l---~~~~~~l~~~L~~~~~vv~tyA 366 (370)
T PF08506_consen 295 QTNELVDVVDFFSQHVLPELQPDVNSHPILKADAIKFLYTF-RNQ----LPKEQL---LQIFPLLVNHLQSSSYVVHTYA 366 (370)
T ss_dssp -B-TTS-HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHH-GGG----S-HHHH---HHHHHHHHHHTTSS-HHHHHHH
T ss_pred cccccccHHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHH-Hhh----CCHHHH---HHHHHHHHHHhCCCCcchhhhh
Confidence 10 0111111 1122 23445667777777666 321 123333 368899999995 455578888
Q ss_pred HHHH
Q 015728 254 VRAF 257 (401)
Q Consensus 254 ~~aL 257 (401)
|.++
T Consensus 367 A~~i 370 (370)
T PF08506_consen 367 AIAI 370 (370)
T ss_dssp HHHH
T ss_pred hhhC
Confidence 7764
No 422
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.39 E-value=3.8e+02 Score=27.16 Aligned_cols=195 Identities=12% Similarity=0.030 Sum_probs=94.8
Q ss_pred hHHHHHHhhhhhhcChH-HHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhc--cCCcccchhhhHHHHHHHHHHHH
Q 015728 94 SLSTLKHSLQSHEATLE-TKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLF--GKAESKFSQVYVQFVEESLSCVQ 170 (401)
Q Consensus 94 ~~~~l~~~l~~~~~~~~-~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~--s~~~~~~~~~~~~~~~~a~~~~L 170 (401)
+...+.+.+++..+..+ .+..-...+..+..... +-+.|.+..++..+. ..++ +.+.+..|+. .|
T Consensus 215 ~~~il~q~~ss~ts~~~~~ritd~Af~ael~~~~~-----l~~~~lL~s~~~~la~ka~dp------~a~~r~~a~r-~L 282 (533)
T KOG2032|consen 215 MGKILAQLLSSITSEKENGRITDIAFFAELKRPKE-----LDKTGLLGSVLLSLANKATDP------SAKSRGMACR-GL 282 (533)
T ss_pred HHHHHhhcccccchhcccchHHHHHHHHHHhCccc-----ccccccHHHHHHHHHHhccCc------hhHHHHHHHH-HH
Confidence 44455555555444333 22233333333333322 224565655555553 2222 2567888888 66
Q ss_pred HhhcCC-chhhhhhcccCCchHHHHHHh-hcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHH---HHHHHc-c
Q 015728 171 KLLLVG-ETESLNLLNEESKMESFIVLF-EHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLR---EIISLV-H 244 (401)
Q Consensus 171 ~~l~~~-~~~~~~~v~~~g~i~~Lv~~L-~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~---~Lv~lL-~ 244 (401)
.+.+.. ++..+... .-.+..++.-| +..+.+++..+...|..+ ...- .++... .+.++ .+..++ +
T Consensus 283 ~~~as~~P~kv~th~--~~~ldaii~gL~D~~~~~V~leam~~Lt~v-~~~~---~~~~l~---~~~l~ialrlR~l~~s 353 (533)
T KOG2032|consen 283 GNTASGAPDKVRTHK--TTQLDAIIRGLYDDLNEEVQLEAMKCLTMV-LEKA---SNDDLE---SYLLNIALRLRTLFDS 353 (533)
T ss_pred HHHhccCcHHHHHhH--HHHHHHHHHHHhcCCccHHHHHHHHHHHHH-HHhh---hhcchh---hhchhHHHHHHHHHHh
Confidence 666654 33332221 11244444444 444678888888877776 3322 222211 13333 344455 4
Q ss_pred CCchhHHHHHHHHHHhcCCCchhHH--HHh---cCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHH
Q 015728 245 HNSEASDAGVRAFSALCSTETNRKT--LVQ---EGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDAL 314 (401)
Q Consensus 245 ~~~~~~~~a~~aL~~Ls~~~~n~~~--iv~---~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~ 314 (401)
.+++++-+|-.++..|+.....+.+ +.+ .+..|.++ .|. +.++ ....|+......+.-+-.+.+.
T Consensus 354 e~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lll-hl~---d~~p-~va~ACr~~~~~c~p~l~rke~ 423 (533)
T KOG2032|consen 354 EDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLL-HLQ---DPNP-YVARACRSELRTCYPNLVRKEL 423 (533)
T ss_pred cChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhcccccee-eeC---CCCh-HHHHHHHHHHHhcCchhHHHHH
Confidence 5667777777777777754433333 232 23334333 344 2333 3355666666666544444433
No 423
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=42.33 E-value=9.8 Score=38.53 Aligned_cols=50 Identities=12% Similarity=0.250 Sum_probs=30.8
Q ss_pred CCCcccccccccccCCce-EcCccccccHHhHHHHHHc-----------CCCCCCCCcccCC
Q 015728 9 IPHLFRCPISLDLFTDPV-TLCTGQTYDRSSIEKWLAA-----------GNLTCPVTMQTLH 58 (401)
Q Consensus 9 ~~~~~~C~iC~~~~~~Pv-~~~Cgh~fc~~Ci~~~~~~-----------~~~~CP~c~~~~~ 58 (401)
+.+-|.|..|..+-..-- .-.=-..||..|+...-.. .-+.||.|...+.
T Consensus 2 l~~L~fC~~C~~irc~~c~~~Ei~~~yCp~CL~~~p~~e~~~~~nrC~r~Cf~CP~C~~~L~ 63 (483)
T PF05502_consen 2 LEELYFCEHCHKIRCPRCVSEEIDSYYCPNCLFEVPSSEARSEKNRCSRNCFDCPICFSPLS 63 (483)
T ss_pred cccceecccccccCChhhcccccceeECccccccCChhhheeccceeccccccCCCCCCcce
Confidence 456678888888665321 2223345888888665321 2377899987654
No 424
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=42.29 E-value=13 Score=31.15 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=17.2
Q ss_pred CcccccccccccCCceEcCcc
Q 015728 11 HLFRCPISLDLFTDPVTLCTG 31 (401)
Q Consensus 11 ~~~~C~iC~~~~~~Pv~~~Cg 31 (401)
++.+||||++.-.+.|.+-|.
T Consensus 1 ed~~CpICme~PHNAVLLlCS 21 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCS 21 (162)
T ss_pred CCccCceeccCCCceEEEEec
Confidence 467899999999999986543
No 425
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=42.07 E-value=1.4e+02 Score=24.63 Aligned_cols=71 Identities=13% Similarity=0.155 Sum_probs=51.5
Q ss_pred CchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHccC-------CchhHHHHHHHHHHh
Q 015728 188 SKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHH-------NSEASDAGVRAFSAL 260 (401)
Q Consensus 188 g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~-------~~~~~~~a~~aL~~L 260 (401)
.++..+...|.++++.++..|..+|-.++..-. +.+...|+. .+++..|+++++. +..++...+..+..-
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG--~~fh~evas-~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W 114 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCG--ERFHSEVGK-FRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSW 114 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcC--HHHHHHHHh-HHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHH
Confidence 357788888999999999999988888833322 256677765 4889999999942 235777777777655
Q ss_pred c
Q 015728 261 C 261 (401)
Q Consensus 261 s 261 (401)
+
T Consensus 115 ~ 115 (139)
T cd03567 115 T 115 (139)
T ss_pred H
Confidence 4
No 426
>PF12773 DZR: Double zinc ribbon
Probab=41.75 E-value=19 Score=23.61 Aligned_cols=26 Identities=8% Similarity=-0.006 Sum_probs=13.1
Q ss_pred cccHHhHHHHH--HcCCCCCCCCcccCC
Q 015728 33 TYDRSSIEKWL--AAGNLTCPVTMQTLH 58 (401)
Q Consensus 33 ~fc~~Ci~~~~--~~~~~~CP~c~~~~~ 58 (401)
.||..|-.... ......||.|+..+.
T Consensus 13 ~fC~~CG~~l~~~~~~~~~C~~Cg~~~~ 40 (50)
T PF12773_consen 13 KFCPHCGTPLPPPDQSKKICPNCGAENP 40 (50)
T ss_pred cCChhhcCChhhccCCCCCCcCCcCCCc
Confidence 34554543333 123456777776544
No 427
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=41.67 E-value=1.3e+02 Score=28.82 Aligned_cols=79 Identities=10% Similarity=0.108 Sum_probs=52.9
Q ss_pred hHHHHHHHHHHhcCCCchhHHHHhcC--cHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHH------hCCCc
Q 015728 249 ASDAGVRAFSALCSTETNRKTLVQEG--AINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALI------NNPNG 320 (401)
Q Consensus 249 ~~~~a~~aL~~Ls~~~~n~~~iv~~G--~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~------~~~g~ 320 (401)
++-.|...|..+...+....++.+.+ .+.-|++++.....-...++..|+.+|..++........++ ..-|.
T Consensus 238 iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HGi 317 (329)
T PF06012_consen 238 IRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHGI 317 (329)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCccc
Confidence 45566666666666777888888877 99999999984212345788999999999997544333332 12345
Q ss_pred HHHHHHH
Q 015728 321 VYALVKM 327 (401)
Q Consensus 321 i~~Lv~~ 327 (401)
++.+++.
T Consensus 318 L~~llR~ 324 (329)
T PF06012_consen 318 LPQLLRK 324 (329)
T ss_pred HHHHHHH
Confidence 5555553
No 428
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=41.50 E-value=20 Score=33.02 Aligned_cols=48 Identities=21% Similarity=0.407 Sum_probs=27.4
Q ss_pred cccccccccccCCce---------------EcC-ccccc-cHHhHHHHHHc----CCCCCCCCcccCCC
Q 015728 12 LFRCPISLDLFTDPV---------------TLC-TGQTY-DRSSIEKWLAA----GNLTCPVTMQTLHD 59 (401)
Q Consensus 12 ~~~C~iC~~~~~~Pv---------------~~~-Cgh~f-c~~Ci~~~~~~----~~~~CP~c~~~~~~ 59 (401)
...|+||...|..|= .-+ |+..| .++=+...... ..+.|+.|++.|..
T Consensus 187 ~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl 255 (279)
T KOG2462|consen 187 PCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFAL 255 (279)
T ss_pred CcccccccccccchHHhhcccccccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHH
Confidence 467899999887442 211 33333 22223333332 35789999887753
No 429
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=40.96 E-value=22 Score=33.21 Aligned_cols=48 Identities=23% Similarity=0.361 Sum_probs=30.9
Q ss_pred CcccccccccccC--------------C--ceE---cCccccccHHhHHHHHHc-----C----CCCCCCCcccCCC
Q 015728 11 HLFRCPISLDLFT--------------D--PVT---LCTGQTYDRSSIEKWLAA-----G----NLTCPVTMQTLHD 59 (401)
Q Consensus 11 ~~~~C~iC~~~~~--------------~--Pv~---~~Cgh~fc~~Ci~~~~~~-----~----~~~CP~c~~~~~~ 59 (401)
.+-.||+|..+-. | |.+ .|||| .|..=...||.+ + +..||.|...+.-
T Consensus 340 ~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGH-v~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 340 RERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGH-VCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred ccCcCCeeeeecceeeeeccccceeEecCCCcccccCCccc-ccchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 4668999986431 1 222 47999 466556667775 1 4669999877653
No 430
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=40.89 E-value=12 Score=24.96 Aligned_cols=13 Identities=23% Similarity=0.667 Sum_probs=10.6
Q ss_pred CCCCccccccccc
Q 015728 8 TIPHLFRCPISLD 20 (401)
Q Consensus 8 ~~~~~~~C~iC~~ 20 (401)
++++++.||+|..
T Consensus 30 ~Lp~~w~CP~C~a 42 (50)
T cd00730 30 DLPDDWVCPVCGA 42 (50)
T ss_pred HCCCCCCCCCCCC
Confidence 4788899999975
No 431
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=40.52 E-value=31 Score=19.42 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHH
Q 015728 250 SDAGVRAFSALCSTETNRKTLVQEGAINGLIAYIS 284 (401)
Q Consensus 250 ~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~ 284 (401)
+..|+++|.++.. .-++|+|++.|.
T Consensus 2 R~~Aa~aLg~igd----------~~ai~~L~~~L~ 26 (27)
T PF03130_consen 2 RRAAARALGQIGD----------PRAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHGGG-S----------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC----------HHHHHHHHHHhc
Confidence 5566777766654 347778887775
No 432
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=39.77 E-value=1.4e+02 Score=24.28 Aligned_cols=70 Identities=16% Similarity=0.129 Sum_probs=49.3
Q ss_pred cHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHh--hHHHHHhCCCcHHHHHHHHHh--cCChhHHHHHHHHHHHHh
Q 015728 275 AINGLIAYISNALTRERSLAAIAMARIEQLLAIEN--SKDALINNPNGVYALVKMVFR--VSDHEGSENAINSLMMIC 348 (401)
Q Consensus 275 ~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~--~~~~~~~~~g~i~~Lv~~l~~--~~~~~~~~~a~~~L~~l~ 348 (401)
++..|-+-|. ++++.++-.|+.+|..+..+-. -+..+ .....+..|++++.. ..++.+++.++..+...+
T Consensus 38 a~raL~krl~---~~n~~vql~AL~lLd~~vkNcg~~f~~~i-~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~ 111 (133)
T cd03561 38 AARAIRKKIK---YGNPHVQLLALTLLELLVKNCGKPFHLQV-ADKEFLLELVKIAKNSPKYDPKVREKALELILAWS 111 (133)
T ss_pred HHHHHHHHHc---CCCHHHHHHHHHHHHHHHHhCChHHHHHH-hhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHH
Confidence 5666777777 5678888899999998887533 33444 366778888885433 245678888888886654
No 433
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=39.65 E-value=31 Score=39.24 Aligned_cols=48 Identities=19% Similarity=0.387 Sum_probs=33.1
Q ss_pred ccccccccc--ccCCce-EcCccccccHHhHHHHHHc---------CCCCCCCCcccCCC
Q 015728 12 LFRCPISLD--LFTDPV-TLCTGQTYDRSSIEKWLAA---------GNLTCPVTMQTLHD 59 (401)
Q Consensus 12 ~~~C~iC~~--~~~~Pv-~~~Cgh~fc~~Ci~~~~~~---------~~~~CP~c~~~~~~ 59 (401)
+-.|-||+- +--.|. .+.|+|.|...|..+.+.. +-..||.|..++..
T Consensus 3486 DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3486 DDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred CceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 456888875 223454 5899999988888776553 23569999776643
No 434
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.59 E-value=2.8e+02 Score=26.37 Aligned_cols=109 Identities=12% Similarity=0.107 Sum_probs=59.5
Q ss_pred hHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhHHHHHHHHHHhcCCCchhH
Q 015728 190 MESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEASDAGVRAFSALCSTETNRK 268 (401)
Q Consensus 190 i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~a~~aL~~Ls~~~~n~~ 268 (401)
+...+..|++.+.+.+..+...|..| +..+. +.-..+.. ..|..+++-++ ....+.++|..++..+.+.-.+.-
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrL-s~fh~--e~l~~~L~--~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i 164 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRL-SEFHP--ESLNPMLH--EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSI 164 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHH-HhhhH--HHHHHHHH--HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445566666666666666677766 54431 11111111 24455555553 345588888888888876444332
Q ss_pred HHHhcCcHHHHHHHHHh-hccccchHHHHHHHHHHHHhCC
Q 015728 269 TLVQEGAINGLIAYISN-ALTRERSLAAIAMARIEQLLAI 307 (401)
Q Consensus 269 ~iv~~G~v~~Lv~lL~~-~~~~~~~~~~~a~~~L~~La~~ 307 (401)
.- ....++..|.. +..++.-+++.|-.+|..+..+
T Consensus 165 ~~----~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~ 200 (334)
T KOG2933|consen 165 DQ----ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNH 200 (334)
T ss_pred HH----HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhc
Confidence 22 33344444431 1123445788888888877754
No 435
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=39.51 E-value=9.7 Score=20.26 Aligned_cols=11 Identities=36% Similarity=0.875 Sum_probs=5.5
Q ss_pred cccccccccCC
Q 015728 14 RCPISLDLFTD 24 (401)
Q Consensus 14 ~C~iC~~~~~~ 24 (401)
.|++|...|..
T Consensus 2 ~C~~C~~~f~~ 12 (23)
T PF00096_consen 2 KCPICGKSFSS 12 (23)
T ss_dssp EETTTTEEESS
T ss_pred CCCCCCCccCC
Confidence 45555555444
No 436
>PF15616 TerY-C: TerY-C metal binding domain
Probab=38.99 E-value=16 Score=29.79 Aligned_cols=44 Identities=18% Similarity=0.236 Sum_probs=30.8
Q ss_pred CCCcccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCC
Q 015728 9 IPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHD 59 (401)
Q Consensus 9 ~~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~ 59 (401)
+...-.||-|...+--.+. .||+.||..= .+..+||-|+.....
T Consensus 74 L~g~PgCP~CGn~~~fa~C-~CGkl~Ci~g------~~~~~CPwCg~~g~~ 117 (131)
T PF15616_consen 74 LIGAPGCPHCGNQYAFAVC-GCGKLFCIDG------EGEVTCPWCGNEGSF 117 (131)
T ss_pred hcCCCCCCCCcChhcEEEe-cCCCEEEeCC------CCCEECCCCCCeeee
Confidence 3345689999996554333 7999988532 246889999987643
No 437
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.53 E-value=16 Score=27.33 Aligned_cols=13 Identities=15% Similarity=0.613 Sum_probs=11.8
Q ss_pred cccHHhHHHHHHc
Q 015728 33 TYDRSSIEKWLAA 45 (401)
Q Consensus 33 ~fc~~Ci~~~~~~ 45 (401)
.||+.|+..|+..
T Consensus 42 gFCRNCLs~Wy~e 54 (104)
T COG3492 42 GFCRNCLSNWYRE 54 (104)
T ss_pred HHHHHHHHHHHHH
Confidence 5999999999985
No 438
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=38.01 E-value=3.3e+02 Score=25.15 Aligned_cols=126 Identities=11% Similarity=0.112 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHhcCch----hhhHHHhcCChH-HHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhc
Q 015728 110 ETKLQIVQKIHVVLRESPP----ASNCLIQLGFLP-LLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLL 184 (401)
Q Consensus 110 ~~~~~a~~~L~~l~~~~~~----~r~~i~~~G~i~-~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v 184 (401)
+...+.++.|.+..+.++. .|+.+.+.+.+. -|+.+|.+.... .++...++. +|.+|+..-+-. .
T Consensus 9 ~dcl~~LkdL~r~lr~dd~~~~~v~r~lg~~~iv~~DLiPiL~~~~~~------~~l~~~~l~-LLV~LT~P~~~~---~ 78 (266)
T PF04821_consen 9 DDCLECLKDLKRFLRRDDEDQRDVRRQLGEWNIVQKDLIPILISYKDD------DKLFLACLR-LLVNLTWPIELL---V 78 (266)
T ss_pred HhHHHHHHHHHHHHHHhCcchHHHHHHHHHhchhhhhHHHHHHhccCc------hHHHHHHHH-HHHHhCCCHHHh---c
Confidence 3455566666666554443 255666666665 666666555433 568888888 999888432211 1
Q ss_pred ccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc----c-C-------CchhHHH
Q 015728 185 NEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV----H-H-------NSEASDA 252 (401)
Q Consensus 185 ~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL----~-~-------~~~~~~~ 252 (401)
+.. ..+...+.........+ . .+|..+.. .+++..++.++ . + +....+.
T Consensus 79 ---~~~--------~~~~~~~~~~~~l~~~l-~------~yK~afl~-~~~l~~~~~~l~~~l~~~~~~rt~~d~~ii~l 139 (266)
T PF04821_consen 79 ---ESQ--------PKDKNQRRNIPELLKYL-Q------SYKEAFLD-PRVLKALIRLLLPPLEKDWEDRTERDNLIIEL 139 (266)
T ss_pred ---cCC--------CCChHHHHHHHHHHHHH-H------HHHHHHcc-cHHHHHHHHHHhHHhhcccccCCHHHHHHHHH
Confidence 101 01233333334444444 2 67777776 37777777665 1 1 1238888
Q ss_pred HHHHHHHhcCCC
Q 015728 253 GVRAFSALCSTE 264 (401)
Q Consensus 253 a~~aL~~Ls~~~ 264 (401)
.+..++|+-.-+
T Consensus 140 vL~LiRNlL~Ip 151 (266)
T PF04821_consen 140 VLTLIRNLLAIP 151 (266)
T ss_pred HHHHHHHHhcCC
Confidence 999999987543
No 439
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=37.74 E-value=33 Score=34.47 Aligned_cols=60 Identities=23% Similarity=0.217 Sum_probs=45.7
Q ss_pred cCCchhHHHHHHHHHHhcCCCchhHHHHh-cCcHHHHHHHHHhhccccchHHHHHHHHHHHHhC
Q 015728 244 HHNSEASDAGVRAFSALCSTETNRKTLVQ-EGAINGLIAYISNALTRERSLAAIAMARIEQLLA 306 (401)
Q Consensus 244 ~~~~~~~~~a~~aL~~Ls~~~~n~~~iv~-~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~ 306 (401)
..+++++++|..++.+++.+.+||...+. ...-..+++++. ....++-+.+..++..+-.
T Consensus 339 ~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~---~~~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 339 HKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIV---TPEPRVNKAAARALAILGE 399 (763)
T ss_pred ccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhc---ccccccchhhhHHHHHhhh
Confidence 45778999999999999999999887654 456677888887 4556666667777766655
No 440
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=37.59 E-value=8.6 Score=34.40 Aligned_cols=51 Identities=10% Similarity=0.169 Sum_probs=29.2
Q ss_pred CcccccccccccCCceEcCccc-------cccHHh--HHHHHHcCCCCCCCCcccCCCCCC
Q 015728 11 HLFRCPISLDLFTDPVTLCTGQ-------TYDRSS--IEKWLAAGNLTCPVTMQTLHDPSI 62 (401)
Q Consensus 11 ~~~~C~iC~~~~~~Pv~~~Cgh-------~fc~~C--i~~~~~~~~~~CP~c~~~~~~~~~ 62 (401)
....||+|...|+.....+-+- .||..- +.+.+= ....||.|+......++
T Consensus 4 k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y-~V~vCP~CgyA~~~~~F 63 (214)
T PF09986_consen 4 KKITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFY-EVWVCPHCGYAAFEEDF 63 (214)
T ss_pred CceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeee-eEEECCCCCCccccccc
Confidence 4679999999998765543221 122210 000000 24779999988766543
No 441
>KOG3896 consensus Dynactin, subunit p62 [Cell motility]
Probab=36.79 E-value=10 Score=35.65 Aligned_cols=53 Identities=21% Similarity=0.348 Sum_probs=36.5
Q ss_pred CCCCCcccccccccccCCceEc-CccccccHHhHHHHHH------c----CCCCCCCCcccCCC
Q 015728 7 MTIPHLFRCPISLDLFTDPVTL-CTGQTYDRSSIEKWLA------A----GNLTCPVTMQTLHD 59 (401)
Q Consensus 7 ~~~~~~~~C~iC~~~~~~Pv~~-~Cgh~fc~~Ci~~~~~------~----~~~~CP~c~~~~~~ 59 (401)
.++++.++|--|.++-.+--.+ .-...||..|++..-. + ..+-||.|...++.
T Consensus 19 ~pl~~L~FCRyC~klrc~~Cv~hEvdshfCp~CLEn~ps~EArlKKn~CAnCfDCP~C~htLSa 82 (449)
T KOG3896|consen 19 RPLPDLVFCRYCFKLRCDDCVLHEVDSHFCPRCLENSPSPEARLKKNKCANCFDCPKCAHTLSA 82 (449)
T ss_pred ccccceeeeecccccccccccccccccccchhhccCCCchHHHhhhccccccccCcchhhhhhh
Confidence 3567888999998877654333 4556799999976422 1 24779999876653
No 442
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=36.25 E-value=13 Score=24.38 Aligned_cols=14 Identities=21% Similarity=0.572 Sum_probs=8.4
Q ss_pred CCCCCccccccccc
Q 015728 7 MTIPHLFRCPISLD 20 (401)
Q Consensus 7 ~~~~~~~~C~iC~~ 20 (401)
.++++++.||+|..
T Consensus 29 ~~Lp~~w~CP~C~a 42 (47)
T PF00301_consen 29 EDLPDDWVCPVCGA 42 (47)
T ss_dssp GGS-TT-B-TTTSS
T ss_pred HHCCCCCcCcCCCC
Confidence 35788999999975
No 443
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=35.98 E-value=12 Score=39.87 Aligned_cols=45 Identities=13% Similarity=-0.025 Sum_probs=0.0
Q ss_pred cccccccccccCCceEcCcccc-----ccHHhHHHHHHcCCCCCCCCcccCCC
Q 015728 12 LFRCPISLDLFTDPVTLCTGQT-----YDRSSIEKWLAAGNLTCPVTMQTLHD 59 (401)
Q Consensus 12 ~~~C~iC~~~~~~Pv~~~Cgh~-----fc~~Ci~~~~~~~~~~CP~c~~~~~~ 59 (401)
.+.||-|...-.....-.||.. +|..|-... ....||.|+.....
T Consensus 655 ~r~Cp~Cg~~t~~~~Cp~CG~~T~~~~~Cp~C~~~~---~~~~C~~C~~~~~~ 704 (900)
T PF03833_consen 655 RRRCPKCGKETFYNRCPECGSHTEPVYVCPDCGIEV---EEDECPKCGRETTS 704 (900)
T ss_dssp -----------------------------------------------------
T ss_pred cccCcccCCcchhhcCcccCCccccceecccccccc---CccccccccccCcc
Confidence 5789999987655555558843 688887654 23479999877644
No 444
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=35.72 E-value=2.9e+02 Score=23.87 Aligned_cols=125 Identities=18% Similarity=0.219 Sum_probs=73.8
Q ss_pred HHHHHHHc-cCCchhHHHHHHHHHHhcC-CCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHH
Q 015728 236 LREIISLV-HHNSEASDAGVRAFSALCS-TETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDA 313 (401)
Q Consensus 236 i~~Lv~lL-~~~~~~~~~a~~aL~~Ls~-~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~ 313 (401)
++.++.+. +.+..++..|+..|.-+-. .=-|-.. +||.|+.|.. ++++.++..|...+..+....++--.
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~-----cvp~lIAL~t---s~~~~ir~~A~~~l~~l~eK~~s~v~ 81 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQ-----CVPTLIALET---SPNPSIRSRAYQLLKELHEKHESLVE 81 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHH-----HHhHhhhhhC---CCChHHHHHHHHHHHHHHHHhHHHHH
Confidence 44455544 5666788888887765442 2223332 7899999988 78999999999999999875544433
Q ss_pred HHhCCCcHHHHHHHHHhc-CChhH-----HHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcC
Q 015728 314 LINNPNGVYALVKMVFRV-SDHEG-----SENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQ 374 (401)
Q Consensus 314 ~~~~~g~i~~Lv~~l~~~-~~~~~-----~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~ 374 (401)
-. -..||..-.+.-.+. ++... ...-..-|..+...+...|..+ +..|+..+...
T Consensus 82 ~~-~~~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~~~ 142 (187)
T PF12830_consen 82 SR-YSEGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFDFD 142 (187)
T ss_pred HH-HHHHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHHhh
Confidence 21 122444444421111 11111 4556666677777655666554 44556655443
No 445
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=35.61 E-value=6.7 Score=22.09 Aligned_cols=8 Identities=25% Similarity=0.351 Sum_probs=4.0
Q ss_pred CCCCCCcc
Q 015728 48 LTCPVTMQ 55 (401)
Q Consensus 48 ~~CP~c~~ 55 (401)
..||.|+.
T Consensus 17 ~fC~~CG~ 24 (26)
T PF13248_consen 17 KFCPNCGA 24 (26)
T ss_pred ccChhhCC
Confidence 44555544
No 446
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=35.08 E-value=27 Score=21.14 Aligned_cols=10 Identities=20% Similarity=0.484 Sum_probs=6.8
Q ss_pred CCCCCCCccc
Q 015728 47 NLTCPVTMQT 56 (401)
Q Consensus 47 ~~~CP~c~~~ 56 (401)
...||.|+.+
T Consensus 18 p~~CP~Cg~~ 27 (34)
T cd00729 18 PEKCPICGAP 27 (34)
T ss_pred CCcCcCCCCc
Confidence 3468888764
No 447
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=34.85 E-value=8.1e+02 Score=28.76 Aligned_cols=126 Identities=13% Similarity=0.187 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhHHHHHHHHHHhcCCCc-h-hHHHHhcCcHHHHHHH
Q 015728 206 KRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEASDAGVRAFSALCSTET-N-RKTLVQEGAINGLIAY 282 (401)
Q Consensus 206 ~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~a~~aL~~Ls~~~~-n-~~~iv~~G~v~~Lv~l 282 (401)
.++-++...| +... ++-... .+.+..++..|. ....++..|+++|.++..-+. . ....|+.|+.. -
T Consensus 795 ~~a~li~~~l-a~~r---~f~~sf---D~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~----R 863 (1692)
T KOG1020|consen 795 DDAKLIVFYL-AHAR---SFSQSF---DPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHG----R 863 (1692)
T ss_pred hhHHHHHHHH-Hhhh---HHHHhh---HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHH----h
Confidence 3455555555 4332 333322 466777777775 445699999999999986444 2 23334444333 3
Q ss_pred HHhhccccchHHHHHHHHHHHHh-CCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCH
Q 015728 283 ISNALTRERSLAAIAMARIEQLL-AIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSL 352 (401)
Q Consensus 283 L~~~~~~~~~~~~~a~~~L~~La-~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~ 352 (401)
+. +.+-.+++.|+..+.... ..++.-.+.. ..+++.++..| ..+++.++++|.-+|...+
T Consensus 864 ~~---DssasVREAaldLvGrfvl~~~e~~~qyY------~~i~erIlDtg-vsVRKRvIKIlrdic~e~p 924 (1692)
T KOG1020|consen 864 LN---DSSASVREAALDLVGRFVLSIPELIFQYY------DQIIERILDTG-VSVRKRVIKILRDICEETP 924 (1692)
T ss_pred hc---cchhHHHHHHHHHHhhhhhccHHHHHHHH------HHHHhhcCCCc-hhHHHHHHHHHHHHHHhCC
Confidence 33 456789999999888444 3333333332 13344344444 4789999999999997764
No 448
>PRK11595 DNA utilization protein GntX; Provisional
Probab=34.71 E-value=26 Score=31.55 Aligned_cols=39 Identities=8% Similarity=-0.086 Sum_probs=25.0
Q ss_pred cccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCC
Q 015728 14 RCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLH 58 (401)
Q Consensus 14 ~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~ 58 (401)
.|.+|...+..+ ....|..|...+.. -...||.|+.+..
T Consensus 7 ~C~~C~~~~~~~-----~~~lC~~C~~~l~~-~~~~C~~Cg~~~~ 45 (227)
T PRK11595 7 LCWLCRMPLALS-----HWGICSVCSRALRT-LKTCCPQCGLPAT 45 (227)
T ss_pred cCccCCCccCCC-----CCcccHHHHhhCCc-ccCcCccCCCcCC
Confidence 699999866422 12368888776532 2346999987643
No 449
>PRK09169 hypothetical protein; Validated
Probab=34.61 E-value=9.6e+02 Score=29.54 Aligned_cols=97 Identities=11% Similarity=0.090 Sum_probs=50.0
Q ss_pred ChhhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHH
Q 015728 91 TIDSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQ 170 (401)
Q Consensus 91 ~~~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L 170 (401)
+.+.+..+...|+.-. +....+.++..|......++..+..+ +.--|..+++-|+.... .+....++.++-
T Consensus 203 ~~q~va~~lnalSKwp-~~~~cr~a~~~lA~rL~~~~~l~~~l-~~q~va~~LNAlSKWp~-------~~~c~~aa~~lA 273 (2316)
T PRK09169 203 DAQEVANALNALSKWP-DSPRCRNAAERLAERLADEPGLLQSL-RAQEVALLLNALSKWPD-------DEACRQAAEALA 273 (2316)
T ss_pred chHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHhcChHHHHhc-CHHHHHHHHHHHhcCCC-------ChHHHHHHHHHH
Confidence 3444555544454332 34577788888888887776655555 33346667776643322 224444444233
Q ss_pred HhhcCCchhhhhhcccCCchHHHHHHhh
Q 015728 171 KLLLVGETESLNLLNEESKMESFIVLFE 198 (401)
Q Consensus 171 ~~l~~~~~~~~~~v~~~g~i~~Lv~~L~ 198 (401)
..|. .+...+.-+ ++..|...++-|.
T Consensus 274 ~rla-~~~~lr~~~-~~Q~vAN~LNALS 299 (2316)
T PRK09169 274 ARLA-REPGLRLAL-DPQGVANALNALS 299 (2316)
T ss_pred HHHh-cChhhhhhc-CHHHHHHHHHHHH
Confidence 3444 233333333 3444555555553
No 450
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=34.54 E-value=2.2e+02 Score=30.51 Aligned_cols=147 Identities=13% Similarity=0.071 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcC---CchhhhhhcccCCc
Q 015728 113 LQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLV---GETESLNLLNEESK 189 (401)
Q Consensus 113 ~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~---~~~~~~~~v~~~g~ 189 (401)
.+|+..+-....+.+ + -.=.|.++.++..|...........++.-.|-|+. ++.++.. .+.....++ +.=.
T Consensus 388 laal~fl~~~~sKrk--e--~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr-~lasi~s~itk~sp~an~m-e~fi 461 (970)
T COG5656 388 LAALFFLIISKSKRK--E--ETFQGILSFLLSILGQSAATPSNIDNARQAEGALR-LLASIKSFITKMSPAANVM-EYFI 461 (970)
T ss_pred HHHHHHHHHHhcccc--h--hhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHH-HHHHHHHHhccCchHHHHH-HHHH
Confidence 345555554443322 1 11268899999999433322111134555566777 6665542 111122222 2234
Q ss_pred hHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhHHHHHHHHHHhcCCCchhH
Q 015728 190 MESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEASDAGVRAFSALCSTETNRK 268 (401)
Q Consensus 190 i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~a~~aL~~Ls~~~~n~~ 268 (401)
++.++-.+++...-.+.+|+..+..+ +.+ .+..-... .+.+.....+. .+.+++..|+.||.-+-.+.....
T Consensus 462 v~hv~P~f~s~ygfL~Srace~is~~-eeD-----fkd~~ill-~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~ 534 (970)
T COG5656 462 VNHVIPAFRSNYGFLKSRACEFISTI-EED-----FKDNGILL-EAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHE 534 (970)
T ss_pred HHHhhHhhcCcccchHHHHHHHHHHH-HHh-----cccchHHH-HHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhH
Confidence 56666667787778888999988888 643 23322222 45566677774 456799999999998887776555
Q ss_pred HHHh
Q 015728 269 TLVQ 272 (401)
Q Consensus 269 ~iv~ 272 (401)
++.+
T Consensus 535 k~sa 538 (970)
T COG5656 535 KFSA 538 (970)
T ss_pred HHHh
Confidence 5444
No 451
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=34.39 E-value=2.1e+02 Score=30.34 Aligned_cols=157 Identities=13% Similarity=0.080 Sum_probs=85.3
Q ss_pred HHHHHHHHHccC---CchhHHHHHHHHHHhcCCCc---hhHH---HH------hcCc----HHHHHHHHHhhccccchHH
Q 015728 234 RLLREIISLVHH---NSEASDAGVRAFSALCSTET---NRKT---LV------QEGA----INGLIAYISNALTRERSLA 294 (401)
Q Consensus 234 g~i~~Lv~lL~~---~~~~~~~a~~aL~~Ls~~~~---n~~~---iv------~~G~----v~~Lv~lL~~~~~~~~~~~ 294 (401)
|.+..|+..+.+ .....+.-...|.+++.+.. ..+. ++ .-|. ...+++||. +.+--++
T Consensus 240 ~~~aeli~~isde~n~~~l~edi~~~l~~l~fn~~d~~Gpk~islFl~kls~l~p~i~lrq~~~~~~LLd---ses~tlR 316 (1128)
T COG5098 240 GLIAELIPSISDELNRCALKEDIPVLLKNLSFNLPDLSGPKDISLFLNKLSELSPGIMLRQYEHFDELLD---SESFTLR 316 (1128)
T ss_pred HHHHHHHHHhHHHhhhhhhhcccHHHHhhceeecccccChHHHHHHHHHHhhcCchHHHHHHHHHHHHhc---ccchhHH
Confidence 555556666532 23355556666666664332 1111 11 1222 345677787 5565666
Q ss_pred HHHHHHHHHHhCCHhhHHHHHh-CCCcHHHHHHHH---HhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHH
Q 015728 295 AIAMARIEQLLAIENSKDALIN-NPNGVYALVKMV---FRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLL 370 (401)
Q Consensus 295 ~~a~~~L~~La~~~~~~~~~~~-~~g~i~~Lv~~l---~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~l 370 (401)
-..+.+.+|+..+-.-..++++ ...-+..|+.++ +.+..+-.+-.|+.++.-|+..+. +-.-.++..+...+.-
T Consensus 317 c~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~s--k~~~~r~ev~~lv~r~ 394 (1128)
T COG5098 317 CCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNS--KTVGRRHEVIRLVGRR 394 (1128)
T ss_pred HHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcc--cccchHHHHHHHHHHH
Confidence 6666666666643221112221 111344444432 345677889999999998886542 1111123344455666
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHhhHH
Q 015728 371 LQSQCSNRTKTKARMLLKLLRSKWAE 396 (401)
Q Consensus 371 l~~~~~~~~~~~A~~~L~~l~~~~~e 396 (401)
+|+. +..+|++|.+++--|--.+|.
T Consensus 395 lqDr-ss~VRrnaikl~SkLL~~HPF 419 (1128)
T COG5098 395 LQDR-SSVVRRNAIKLCSKLLMRHPF 419 (1128)
T ss_pred hhhh-hHHHHHHHHHHHHHHHhcCCh
Confidence 7887 889999999988655433543
No 452
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=33.86 E-value=2.6e+02 Score=27.15 Aligned_cols=94 Identities=14% Similarity=0.081 Sum_probs=60.2
Q ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHH
Q 015728 276 INGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAR 355 (401)
Q Consensus 276 v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~ 355 (401)
|..+++=|.. +.+..++..++--|+.-+.++.-|..+. ..|.+..+++.+....+...-..+..++..+-..+....
T Consensus 23 v~ylld~l~~--~~~~s~Rr~sll~La~K~~~~~Fr~~~r-a~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~ 99 (361)
T PF07814_consen 23 VEYLLDGLES--SSSSSVRRSSLLELASKCADPQFRRQFR-AHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNM 99 (361)
T ss_pred HHHHHhhccc--CCCccHHHHHHHHHHHHhCCHHHHHHHH-HcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcch
Confidence 4445554542 4456788888888888888999999995 779999999966444443233334444444433333344
Q ss_pred HHHHHcCcHHHHHHHhh
Q 015728 356 EEAICAGVLTQLLLLLQ 372 (401)
Q Consensus 356 ~~~~~~g~v~~L~~ll~ 372 (401)
..+.+.+....++.|+.
T Consensus 100 ~l~~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 100 HLLLDRDSLRLLLKLLK 116 (361)
T ss_pred hhhhchhHHHHHHHHhc
Confidence 34456666666677776
No 453
>COG4640 Predicted membrane protein [Function unknown]
Probab=33.67 E-value=17 Score=35.08 Aligned_cols=40 Identities=8% Similarity=0.140 Sum_probs=25.5
Q ss_pred ccHHhHHHHHHcCCCCCCCCcccCCCCCCCCcHHHHHHHHH
Q 015728 34 YDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLRHLINQ 74 (401)
Q Consensus 34 fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~n~~l~~~i~~ 74 (401)
||..|-.+-.. +...||.|+.++....-+.|..+..+++.
T Consensus 3 fC~kcG~qk~E-d~~qC~qCG~~~t~~~sqan~~tn~i~~t 42 (465)
T COG4640 3 FCPKCGSQKAE-DDVQCTQCGHKFTSRQSQANKSTNEIIQT 42 (465)
T ss_pred ccccccccccc-ccccccccCCcCCchhhhhhHHHHHHHHh
Confidence 66666533222 44459999998887766677666666544
No 454
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=33.32 E-value=21 Score=34.98 Aligned_cols=40 Identities=18% Similarity=0.266 Sum_probs=27.3
Q ss_pred cccccccccccC-----CceEcCccccccHHhHHHHHHcCCCCCCC
Q 015728 12 LFRCPISLDLFT-----DPVTLCTGQTYDRSSIEKWLAAGNLTCPV 52 (401)
Q Consensus 12 ~~~C~iC~~~~~-----~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~ 52 (401)
-..||.|+.... ..++-.|||-||..|.-.|.. +...|..
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~-~~~~~~~ 350 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKT-HNGECYE 350 (384)
T ss_pred cCcCcccceeeeecCCcceEEeeccccchhhcCcchhh-CCccccC
Confidence 357999987653 344545999999999988876 4443433
No 455
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=33.30 E-value=91 Score=26.12 Aligned_cols=28 Identities=14% Similarity=0.264 Sum_probs=20.3
Q ss_pred HHHHHHHHc-cCCchhHHHHHHHHHHhcC
Q 015728 235 LLREIISLV-HHNSEASDAGVRAFSALCS 262 (401)
Q Consensus 235 ~i~~Lv~lL-~~~~~~~~~a~~aL~~Ls~ 262 (401)
-|.+||.+| +++.++...|+.+|.+.-.
T Consensus 95 NV~~LI~~L~~~d~~lA~~Aa~aLk~TlL 123 (154)
T PF11791_consen 95 NVQPLIDLLKSDDEELAEEAAEALKNTLL 123 (154)
T ss_dssp THHHHHHGG--G-TTTHHHHHHHHHT--T
T ss_pred cHHHHHHHHcCCcHHHHHHHHHHHHhhHH
Confidence 379999999 4567799999999988653
No 456
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=33.09 E-value=5.1e+02 Score=27.86 Aligned_cols=112 Identities=13% Similarity=0.188 Sum_probs=73.4
Q ss_pred HHHHHHHHHc-cCCchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhC-CHhhH
Q 015728 234 RLLREIISLV-HHNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLA-IENSK 311 (401)
Q Consensus 234 g~i~~Lv~lL-~~~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~-~~~~~ 311 (401)
.+...+...+ .++....+..+.++.++..-..-..+- +..-.++-..-.. ..-..+.+....+|..++. +++.-
T Consensus 441 ~lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~-~~~~~~~~~~~~N---~~~~~~~~~~~~il~rls~~~~~~L 516 (727)
T PF12726_consen 441 NLWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK-EKDELDPAKTQFN---KSLGQITDLISQILERLSDFDPSHL 516 (727)
T ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc-cccCcchHHHHHH---HHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 3445556655 456668888888888888543311111 2222223233332 2334566778888888885 57777
Q ss_pred HHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcC
Q 015728 312 DALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCD 350 (401)
Q Consensus 312 ~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~ 350 (401)
..+..+.+++..++..++. ++....+.|..+|-.....
T Consensus 517 ~~l~~d~~~~~~i~s~lfs-p~~~l~qaA~~llk~~~d~ 554 (727)
T PF12726_consen 517 KELLSDPDAAQAIWSLLFS-PDDDLYQAAQDLLKQAFDV 554 (727)
T ss_pred HHHHcCcchhhHHHhheeC-CChHHHHHHHHHHHHHhcC
Confidence 8888899999999996664 4557999999999888754
No 457
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=32.77 E-value=19 Score=30.13 Aligned_cols=27 Identities=26% Similarity=0.641 Sum_probs=18.1
Q ss_pred CccccccHHhHHHHHHc----------CCCCCCCCcccCCCC
Q 015728 29 CTGQTYDRSSIEKWLAA----------GNLTCPVTMQTLHDP 60 (401)
Q Consensus 29 ~Cgh~fc~~Ci~~~~~~----------~~~~CP~c~~~~~~~ 60 (401)
.+||.|.. ||.+ +-..||+|+..--.+
T Consensus 9 ~~gH~FEg-----WF~ss~~fd~Q~~~glv~CP~Cgs~~V~K 45 (148)
T PF06676_consen 9 ENGHEFEG-----WFRSSAAFDRQQARGLVSCPVCGSTEVSK 45 (148)
T ss_pred CCCCccce-----ecCCHHHHHHHHHcCCccCCCCCCCeEee
Confidence 47888853 5543 568899998764433
No 458
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=32.63 E-value=15 Score=19.25 Aligned_cols=10 Identities=40% Similarity=0.849 Sum_probs=3.6
Q ss_pred cccccccccC
Q 015728 14 RCPISLDLFT 23 (401)
Q Consensus 14 ~C~iC~~~~~ 23 (401)
.|++|...|.
T Consensus 2 ~C~~C~~~~~ 11 (24)
T PF13894_consen 2 QCPICGKSFR 11 (24)
T ss_dssp E-SSTS-EES
T ss_pred CCcCCCCcCC
Confidence 3444444443
No 459
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=32.36 E-value=24 Score=32.63 Aligned_cols=25 Identities=16% Similarity=0.462 Sum_probs=16.0
Q ss_pred cccccccccccC-CceEc--CccccccH
Q 015728 12 LFRCPISLDLFT-DPVTL--CTGQTYDR 36 (401)
Q Consensus 12 ~~~C~iC~~~~~-~Pv~~--~Cgh~fc~ 36 (401)
.|.||+|...+. .+-.+ +.||+|..
T Consensus 2 ~~~CP~C~~~l~~~~~~~~C~~~h~fd~ 29 (272)
T PRK11088 2 SYQCPLCHQPLTLEENSWICPQNHQFDC 29 (272)
T ss_pred cccCCCCCcchhcCCCEEEcCCCCCCcc
Confidence 378999999875 22222 45677643
No 460
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=32.18 E-value=2e+02 Score=28.22 Aligned_cols=75 Identities=24% Similarity=0.276 Sum_probs=52.8
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCH-HHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHHhh
Q 015728 320 GVYALVKMVFRVSDHEGSENAINSLMMICCDSL-QAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAEEL 398 (401)
Q Consensus 320 ~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e~~ 398 (401)
++..+.+. +...++.+.-.|+..|..+..+.+ ..|.++-.......|..++.+...+.++++.+.++ +.|.||+
T Consensus 46 ~lk~i~KR-ln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv----~eWsee~ 120 (462)
T KOG2199|consen 46 CLKAIMKR-LNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLV----KEWSEEF 120 (462)
T ss_pred HHHHHHHH-hcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHH----HHHHHHh
Confidence 34555564 456777888899999988877754 57778888888888888987443566666655444 4477776
Q ss_pred c
Q 015728 399 K 399 (401)
Q Consensus 399 ~ 399 (401)
|
T Consensus 121 K 121 (462)
T KOG2199|consen 121 K 121 (462)
T ss_pred c
Confidence 5
No 461
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=31.81 E-value=3.8e+02 Score=24.08 Aligned_cols=137 Identities=18% Similarity=0.183 Sum_probs=73.8
Q ss_pred HHHHHHHc-c-CCchhHHHHHHHHHHhcCCC-chhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHH
Q 015728 236 LREIISLV-H-HNSEASDAGVRAFSALCSTE-TNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKD 312 (401)
Q Consensus 236 i~~Lv~lL-~-~~~~~~~~a~~aL~~Ls~~~-~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~ 312 (401)
++.|+.-+ + .+++.+...+.+|..++.++ .+...+ +..|..+.. .+..+...-+...+..+-..+..
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~v-----~~~L~~L~~---~~~~~~~~~~~rLl~~lw~~~~r-- 71 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPPV-----LQTLVSLVE---QGSLELRYVALRLLTLLWKANDR-- 71 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhHH-----HHHHHHHHc---CCchhHHHHHHHHHHHHHHhCch--
Confidence 34455534 3 45679999999999999877 443332 334444444 33434433455555544432111
Q ss_pred HHHhCCCcHHHHHHH-HHh-----cCChhHHHH---HHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHh-hcCCCHHHHHH
Q 015728 313 ALINNPNGVYALVKM-VFR-----VSDHEGSEN---AINSLMMICCDSLQAREEAICAGVLTQLLLLL-QSQCSNRTKTK 382 (401)
Q Consensus 313 ~~~~~~g~i~~Lv~~-l~~-----~~~~~~~~~---a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll-~~~~~~~~~~~ 382 (401)
.+ +.+..++.. .++ .++....+. ....+..+|...++ ...-.++.+..++ +.. ++..+..
T Consensus 72 ~f----~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-----~g~~ll~~ls~~L~~~~-~~~~~al 141 (234)
T PF12530_consen 72 HF----PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD-----HGVDLLPLLSGCLNQSC-DEVAQAL 141 (234)
T ss_pred HH----HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh-----hHHHHHHHHHHHHhccc-cHHHHHH
Confidence 00 233333331 011 111122222 23466777777665 3334456677777 455 8888999
Q ss_pred HHHHHHHHHH
Q 015728 383 ARMLLKLLRS 392 (401)
Q Consensus 383 A~~~L~~l~~ 392 (401)
+...|..|.+
T Consensus 142 ale~l~~Lc~ 151 (234)
T PF12530_consen 142 ALEALAPLCE 151 (234)
T ss_pred HHHHHHHHHH
Confidence 9888888875
No 462
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.44 E-value=1.8e+02 Score=29.40 Aligned_cols=76 Identities=12% Similarity=0.070 Sum_probs=56.5
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCH-HHHHHHHHcCcHHHHHHHhhcC-CCHHHHHHHHHHHHHHHHhhHH
Q 015728 320 GVYALVKMVFRVSDHEGSENAINSLMMICCDSL-QAREEAICAGVLTQLLLLLQSQ-CSNRTKTKARMLLKLLRSKWAE 396 (401)
Q Consensus 320 ~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~v~~L~~ll~~~-~~~~~~~~A~~~L~~l~~~~~e 396 (401)
+|..|.+. +...++.++-.|+.+|-.+.++.+ .....+.+.+.+.-+|.+.... ....+|+++..+|+.-.+.+++
T Consensus 39 AvralkKR-i~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~ 116 (470)
T KOG1087|consen 39 AVRALKKR-LNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQQAFCG 116 (470)
T ss_pred HHHHHHHH-hccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHHHHccC
Confidence 34445553 344556888889998888877755 4666888999999999988766 5778999998888877665544
No 463
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=30.75 E-value=25 Score=36.91 Aligned_cols=44 Identities=14% Similarity=0.159 Sum_probs=0.0
Q ss_pred ccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCC-CCCCc
Q 015728 13 FRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDP-SIVPN 65 (401)
Q Consensus 13 ~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~-~~~~n 65 (401)
..||-|+.. .+=++.||..|-... ....||.|+...... .+.++
T Consensus 2 ~~Cp~Cg~~------n~~~akFC~~CG~~l---~~~~Cp~CG~~~~~~~~fC~~ 46 (645)
T PRK14559 2 LICPQCQFE------NPNNNRFCQKCGTSL---THKPCPQCGTEVPVDEAHCPN 46 (645)
T ss_pred CcCCCCCCc------CCCCCccccccCCCC---CCCcCCCCCCCCCcccccccc
No 464
>KOG2842 consensus Interferon-related protein PC4 like [Cytoskeleton]
Probab=30.47 E-value=5.3e+02 Score=25.31 Aligned_cols=216 Identities=12% Similarity=0.005 Sum_probs=90.5
Q ss_pred ChHHHHHHHHHHHHHHhcCchhhhHHHh-cCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhccc
Q 015728 108 TLETKLQIVQKIHVVLRESPPASNCLIQ-LGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNE 186 (401)
Q Consensus 108 ~~~~~~~a~~~L~~l~~~~~~~r~~i~~-~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~ 186 (401)
+..++.+++..+...+.........+.. .-.-..+..+++.+... .+....+++.++......-...-.....
T Consensus 73 ~AktR~~~le~i~lalt~r~l~~fi~e~~~tl~~~~~k~~~k~~sd------~q~~a~~~~g~~~vqlg~~q~~ee~~~t 146 (427)
T KOG2842|consen 73 SAKTRQEALEKIYLALTSRHLPEFILENRATLEDLLEKCLNKPKSD------EQLLAAALIGLLCVQAGPGQEEEEWTKT 146 (427)
T ss_pred chhHHHHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHhcCCccH------HHHHHHHHHHHHHHhccCcchhhHHHhc
Confidence 4557777888777666533222211111 22244566777776653 2222222232333222211122233445
Q ss_pred CCchHHHHHHhhcCCHHHHHHHHHHHHH--HHhcccchhhhhhhhccchHHHHHHHHHccCC--c------hhHHHHHHH
Q 015728 187 ESKMESFIVLFEHGSCSIKKRLCHLVEV--IISSSHETKELCCKLGKDDRLLREIISLVHHN--S------EASDAGVRA 256 (401)
Q Consensus 187 ~g~i~~Lv~~L~~~~~~~~~~aa~~L~~--l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~--~------~~~~~a~~a 256 (401)
.|-+..++..-.+.++..+..++..+.- +++..+..+-.--.+.-. -...... +..++ . ..-...+.+
T Consensus 147 ~~~~~~li~~d~s~sv~~r~~ca~sl~v~~l~a~~d~~e~~~~l~~~~-~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~ 224 (427)
T KOG2842|consen 147 LGPFLALILDDESASIKARSICATSLGTACLIAEADIIELGSFLICLE-ESFGAVY-LEDDETVVVCACQNLGLLLTCLT 224 (427)
T ss_pred cchHHHHHhhccccchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HHHHHhh-cccCCCccccccchhHHHHHHHH
Confidence 5555555555455566666666654433 322222100000011000 0011111 22222 1 111111122
Q ss_pred HHH--hcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcC
Q 015728 257 FSA--LCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVS 332 (401)
Q Consensus 257 L~~--Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~ 332 (401)
++. |..++.+....++.--.|.+..+|...+.........+.+.|..++.+.+---.+ -+..-+-.+.+.|...+
T Consensus 225 ~~a~~Lti~~~~~~~~~~~~~~p~i~~lLs~~~vn~r~aa~et~a~l~e~~q~~~~~f~~-~d~e~l~~~lr~latds 301 (427)
T KOG2842|consen 225 AWSLLLTICPEALSEQLDAALAPKLPLLLSSERVNERIAAGETLALLFELAQDSEFDFIY-PDMEQLLSTLRDLATDS 301 (427)
T ss_pred HHHHHHHcCccchhhHHHHHhccchHHHhccchhhhhhhhhhhHHHHHHHHhcccccccC-CCHHHHHHHHHHHHHhh
Confidence 222 5567666666666546777777776211222334444555566666543322222 13334444555444443
No 465
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=30.40 E-value=1.4e+02 Score=23.64 Aligned_cols=38 Identities=16% Similarity=0.178 Sum_probs=31.3
Q ss_pred cHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHH
Q 015728 275 AINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALI 315 (401)
Q Consensus 275 ~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~ 315 (401)
+|+.|+.-|. +++.++...|+.+|...+.+++....++
T Consensus 9 ~i~lLv~QL~---D~~~~V~~~A~~iL~e~c~~~~~le~~v 46 (115)
T PF14663_consen 9 GIELLVTQLY---DPSPEVVAAALEILEEACEDKEYLEYLV 46 (115)
T ss_pred HHHHHHHHhc---CCCHHHHHHHHHHHHHHHhchhhHHHHH
Confidence 5788888888 6788999999999999998876555554
No 466
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=30.25 E-value=18 Score=30.24 Aligned_cols=14 Identities=36% Similarity=0.795 Sum_probs=11.3
Q ss_pred CCCCCCCCcccCCC
Q 015728 46 GNLTCPVTMQTLHD 59 (401)
Q Consensus 46 ~~~~CP~c~~~~~~ 59 (401)
+.+.||.|+..+..
T Consensus 122 ~~f~Cp~Cg~~l~~ 135 (147)
T smart00531 122 GTFTCPRCGEELEE 135 (147)
T ss_pred CcEECCCCCCEEEE
Confidence 45899999998754
No 467
>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.87 E-value=11 Score=27.53 Aligned_cols=12 Identities=25% Similarity=0.332 Sum_probs=8.5
Q ss_pred ccccccccccCC
Q 015728 13 FRCPISLDLFTD 24 (401)
Q Consensus 13 ~~C~iC~~~~~~ 24 (401)
+.||+|.--+.-
T Consensus 2 llCP~C~v~l~~ 13 (88)
T COG3809 2 LLCPICGVELVM 13 (88)
T ss_pred cccCcCCceeee
Confidence 468988876654
No 468
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=29.47 E-value=3.1e+02 Score=24.04 Aligned_cols=102 Identities=15% Similarity=0.172 Sum_probs=46.3
Q ss_pred hHHHHhcCcHHHHHHHHHhhcccc---------------chHHHHHHHHHHHHhCC-HhhHHHHHhCCCcHHHHHHHHHh
Q 015728 267 RKTLVQEGAINGLIAYISNALTRE---------------RSLAAIAMARIEQLLAI-ENSKDALINNPNGVYALVKMVFR 330 (401)
Q Consensus 267 ~~~iv~~G~v~~Lv~lL~~~~~~~---------------~~~~~~a~~~L~~La~~-~~~~~~~~~~~g~i~~Lv~~l~~ 330 (401)
+.-+.+.|++..++.+|....+.. ..+...+...|..++.+ .+|...+.. -++.++..+..
T Consensus 36 Q~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~---~~~~l~~~~~~ 112 (207)
T PF01365_consen 36 QKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFK---HLDFLISIFMQ 112 (207)
T ss_dssp HHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHH---HHH-----HHC
T ss_pred HHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHH---HHhHHHHHHHH
Confidence 444567899999999997531111 24567788899999976 456666653 34444442222
Q ss_pred cCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhc
Q 015728 331 VSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQS 373 (401)
Q Consensus 331 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~ 373 (401)
. .....-.+..+|..+-.++.+....+.+. .|..++.++..
T Consensus 113 ~-~~~~~~~~~d~l~~i~~dN~~L~~~i~e~-~I~~~i~ll~~ 153 (207)
T PF01365_consen 113 L-QIGYGLGALDVLTEIFRDNPELCESISEE-HIEKFIELLRK 153 (207)
T ss_dssp C-CH-TTHHHHHHHHHHHTT-----------------------
T ss_pred h-hccCCchHHHHHHHHHHCcHHHHHHhhHH-HHHHHHHHHHH
Confidence 1 11112246778888888877666554433 48888888865
No 469
>KOG2593 consensus Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=29.45 E-value=35 Score=33.51 Aligned_cols=64 Identities=16% Similarity=0.268 Sum_probs=36.4
Q ss_pred CCCcccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCC-CCCCc-----------HHHHHHHHHHH
Q 015728 9 IPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDP-SIVPN-----------HTLRHLINQWL 76 (401)
Q Consensus 9 ~~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~-~~~~n-----------~~l~~~i~~~~ 76 (401)
-+..|.||.|+.-|.. ....|+...- .+.|.|-.|+..+... .-.++ ..+..++..++
T Consensus 125 ~~~~Y~Cp~C~kkyt~---------Lea~~L~~~~-~~~F~C~~C~gelveDe~~~~~~e~~~~l~~~~~Q~~pi~d~Lk 194 (436)
T KOG2593|consen 125 NVAGYVCPNCQKKYTS---------LEALQLLDNE-TGEFHCENCGGELVEDENKLPSKESRTALNRLMEQLEPIIDLLK 194 (436)
T ss_pred ccccccCCccccchhh---------hHHHHhhccc-CceEEEecCCCchhcccccCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567999999987764 1122222211 2567888888776432 22222 33555666667
Q ss_pred HhCCCC
Q 015728 77 QMGGGQ 82 (401)
Q Consensus 77 ~~~~~~ 82 (401)
...++.
T Consensus 195 ~~e~i~ 200 (436)
T KOG2593|consen 195 ELEGIK 200 (436)
T ss_pred Hhhccc
Confidence 777655
No 470
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=29.08 E-value=19 Score=24.23 Aligned_cols=11 Identities=27% Similarity=0.761 Sum_probs=5.9
Q ss_pred CCCCCcccCCC
Q 015728 49 TCPVTMQTLHD 59 (401)
Q Consensus 49 ~CP~c~~~~~~ 59 (401)
.||+|+.++..
T Consensus 22 ~CPlC~r~l~~ 32 (54)
T PF04423_consen 22 CCPLCGRPLDE 32 (54)
T ss_dssp E-TTT--EE-H
T ss_pred cCCCCCCCCCH
Confidence 79999988864
No 471
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=28.76 E-value=4.5e+02 Score=26.68 Aligned_cols=77 Identities=17% Similarity=0.182 Sum_probs=49.3
Q ss_pred hCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCC-------------HHHHHHHHHcCcHHHHHHHhhc-CCCHHHHH
Q 015728 316 NNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDS-------------LQAREEAICAGVLTQLLLLLQS-QCSNRTKT 381 (401)
Q Consensus 316 ~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~-------------~~~~~~~~~~g~v~~L~~ll~~-~~~~~~~~ 381 (401)
.+.+.|+.|+..|-...+...+.+|..+|..|..-+ ......+...-.|..|+..|-. .++...-.
T Consensus 59 ~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn 138 (475)
T PF04499_consen 59 AEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVN 138 (475)
T ss_pred HHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHH
Confidence 478999999996543446678888888887763321 1344567777888888887753 22344444
Q ss_pred HHHHHHHHHHH
Q 015728 382 KARMLLKLLRS 392 (401)
Q Consensus 382 ~A~~~L~~l~~ 392 (401)
...-++.+|+|
T Consensus 139 ~v~IlieLIRk 149 (475)
T PF04499_consen 139 GVSILIELIRK 149 (475)
T ss_pred HHHHHHHHHHh
Confidence 44455566654
No 472
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=28.71 E-value=1.1e+02 Score=24.12 Aligned_cols=41 Identities=20% Similarity=0.281 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCH
Q 015728 336 GSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSN 377 (401)
Q Consensus 336 ~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~ 377 (401)
.-...+..|..|+.. ++.=..+++.|+++.|+.||.+++++
T Consensus 62 dLd~~Ik~l~~La~~-P~LYp~lv~l~~v~sL~~LL~HeN~D 102 (108)
T PF08216_consen 62 DLDEEIKKLSVLATA-PELYPELVELGAVPSLLGLLSHENTD 102 (108)
T ss_pred HHHHHHHHHHHccCC-hhHHHHHHHcCCHHHHHHHHCCCCcc
Confidence 344578888888887 56777999999999999999877443
No 473
>KOG3475 consensus 60S ribosomal protein L37 [Translation, ribosomal structure and biogenesis]
Probab=28.12 E-value=25 Score=25.92 Aligned_cols=28 Identities=14% Similarity=0.034 Sum_probs=22.8
Q ss_pred cccccHHhHHHHHHcCCCCCCCCcccCC
Q 015728 31 GQTYDRSSIEKWLAAGNLTCPVTMQTLH 58 (401)
Q Consensus 31 gh~fc~~Ci~~~~~~~~~~CP~c~~~~~ 58 (401)
.|+.|..|-.+.+.-+..+|..|+.+-.
T Consensus 15 shtlC~RCG~~syH~QKstC~~CGYpaa 42 (92)
T KOG3475|consen 15 SHTLCRRCGRRSYHIQKSTCSSCGYPAA 42 (92)
T ss_pred chHHHHHhCchhhhhhcccccccCCcch
Confidence 4889999988877767788999998754
No 474
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=28.09 E-value=4.5e+02 Score=25.32 Aligned_cols=138 Identities=12% Similarity=0.070 Sum_probs=75.0
Q ss_pred HHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-------C-CchhHHHHHHHHHHhcCCCch
Q 015728 195 VLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-------H-NSEASDAGVRAFSALCSTETN 266 (401)
Q Consensus 195 ~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-------~-~~~~~~~a~~aL~~Ls~~~~n 266 (401)
..+.+.+...+.. +|..| +.+. . - .-++|.++..+. . +.....+..+.++.|..++.-
T Consensus 185 ~a~~~~~~~~r~~---aL~sL-~tD~---g------l-~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l 250 (343)
T cd08050 185 EALVGSNEEKRRE---ALQSL-RTDP---G------L-QQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNL 250 (343)
T ss_pred HHHhCCCHHHHHH---HHHHh-ccCC---C------c-hhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCC
Confidence 3333344444433 56666 6654 1 1 245677777661 1 345677777888888887774
Q ss_pred hHHHHhcCcHHHHHHHHHhhc-c------ccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhH-HH
Q 015728 267 RKTLVQEGAINGLIAYISNAL-T------RERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEG-SE 338 (401)
Q Consensus 267 ~~~iv~~G~v~~Lv~lL~~~~-~------~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~-~~ 338 (401)
.-..-=+-.+|+++..+-... . ..-.+++.|+..|..++..-...-.-+ ..-.+..|.+.++....+.. .-
T Consensus 251 ~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l-~~ri~~tl~k~l~d~~~~~~~~Y 329 (343)
T cd08050 251 HLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTL-QPRITRTLLKALLDPKKPLTTHY 329 (343)
T ss_pred chHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcH-HHHHHHHHHHHHcCCCCCcchhh
Confidence 333322338899888774210 1 123688999999999985211110000 11234456665554444333 44
Q ss_pred HHHHHHHHH
Q 015728 339 NAINSLMMI 347 (401)
Q Consensus 339 ~a~~~L~~l 347 (401)
-|+..|..|
T Consensus 330 GAi~GL~~l 338 (343)
T cd08050 330 GAIVGLSAL 338 (343)
T ss_pred HHHHHHHHh
Confidence 466666655
No 475
>PRK00420 hypothetical protein; Validated
Probab=27.55 E-value=24 Score=27.95 Aligned_cols=13 Identities=31% Similarity=0.700 Sum_probs=9.6
Q ss_pred CCCCCCCCcccCC
Q 015728 46 GNLTCPVTMQTLH 58 (401)
Q Consensus 46 ~~~~CP~c~~~~~ 58 (401)
+...||.|+..+.
T Consensus 39 g~~~Cp~Cg~~~~ 51 (112)
T PRK00420 39 GEVVCPVHGKVYI 51 (112)
T ss_pred CceECCCCCCeee
Confidence 5667999987654
No 476
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=27.34 E-value=23 Score=33.88 Aligned_cols=31 Identities=19% Similarity=0.182 Sum_probs=22.9
Q ss_pred Cccccccccc-ccCCceEcCccccccHHhHHH
Q 015728 11 HLFRCPISLD-LFTDPVTLCTGQTYDRSSIEK 41 (401)
Q Consensus 11 ~~~~C~iC~~-~~~~Pv~~~Cgh~fc~~Ci~~ 41 (401)
..+.|.-|.. -...-..++||.-||+.|+.-
T Consensus 38 gk~~C~RC~~~~~~~~~~lp~~~~YCr~Cl~m 69 (441)
T COG4098 38 GKYRCNRCGNTHIELFAKLPCGCLYCRNCLMM 69 (441)
T ss_pred CcEEehhcCCcchhhhcccccceEeehhhhhc
Confidence 3578998884 333445689999999999853
No 477
>PF03392 OS-D: Insect pheromone-binding family, A10/OS-D; InterPro: IPR005055 A class of small (14-20 Kd) water-soluble proteins, called odorant binding proteins (OBPs), first discovered in the insect sensillar lymph but also in the mucus of vertebrates, is postulated to mediate the solubilisation of hydrophobic odorant molecules, and thereby to facilitate their transport to the receptor neurons. The product of a gene expressed in the olfactory system of Drosophila melanogaster (Fruit fly), OS-D, shares features common to vertebrate odorant-binding proteins, but has a primary structure unlike odorant-binding proteins []. OS-D derivatives have subsequently been found in chemosensory organs of phylogenetically distinct insects, including cockroaches, phasmids and moths, suggesting that OS-D-like proteins seem to be conserved in the insect phylum.; PDB: 1KX9_A 1N8U_A 1KX8_A 1K19_A 1N8V_A 2GVS_A 2JNT_A.
Probab=26.64 E-value=65 Score=24.71 Aligned_cols=27 Identities=26% Similarity=0.678 Sum_probs=23.3
Q ss_pred CCCHHHHHHHHHHHHHHHHhhHHhhcc
Q 015728 374 QCSNRTKTKARMLLKLLRSKWAEELKH 400 (401)
Q Consensus 374 ~~~~~~~~~A~~~L~~l~~~~~e~~~~ 400 (401)
.|++.+++.+..+++.+.+..|++.+.
T Consensus 54 KCt~kQK~~~~kv~~~l~~~~P~~w~~ 80 (95)
T PF03392_consen 54 KCTPKQKENARKVIKFLKKNYPDEWEE 80 (95)
T ss_dssp TS-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 478999999999999999999998764
No 478
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=26.64 E-value=7.1e+02 Score=26.44 Aligned_cols=146 Identities=10% Similarity=0.101 Sum_probs=82.9
Q ss_pred HhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchh-hhhhcccCCchHHHHHHhhcCCHHHHHHHHHHH
Q 015728 134 IQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETE-SLNLLNEESKMESFIVLFEHGSCSIKKRLCHLV 212 (401)
Q Consensus 134 ~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~-~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L 212 (401)
.+.+++|.|++|+++.+.. ++-. +|..+-..-+. .++++ +...+|.+..-+...++..|+.....+
T Consensus 327 yq~~i~p~l~kLF~~~Dr~--------iR~~----LL~~i~~~i~~Lt~~~~-~d~I~phv~~G~~DTn~~Lre~Tlksm 393 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQ--------IRLL----LLQYIEKYIDHLTKQIL-NDQIFPHVALGFLDTNATLREQTLKSM 393 (690)
T ss_pred cccchhhhHHHHhcCcchH--------HHHH----HHHhHHHHhhhcCHHhh-cchhHHHHHhhcccCCHHHHHHHHHHH
Confidence 4667899999999888743 4432 33322211111 23344 566788888888888999999999888
Q ss_pred HHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhHHHHHHHHHHhcCCCchhHHHHhcC-cHHHHHHHHHhhcccc
Q 015728 213 EVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEASDAGVRAFSALCSTETNRKTLVQEG-AINGLIAYISNALTRE 290 (401)
Q Consensus 213 ~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G-~v~~Lv~lL~~~~~~~ 290 (401)
..|++..+ ++.+. +..+..|.++-. +....+.+..-+|..++....-. ++.+ .+.+..+-+. ++-
T Consensus 394 ~~La~kL~-----~~~Ln--~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~---~R~~vL~~aftralk---dpf 460 (690)
T KOG1243|consen 394 AVLAPKLS-----KRNLN--GELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAAS---VRKRVLASAFTRALK---DPF 460 (690)
T ss_pred HHHHhhhc-----hhhhc--HHHHHHHHhhCccccCcccccceeeecccccccchh---hhccccchhhhhhhc---CCC
Confidence 88855443 22221 234444444432 23457777777777777543211 1333 2333444444 344
Q ss_pred chHHHHHHHHHHHHh
Q 015728 291 RSLAAIAMARIEQLL 305 (401)
Q Consensus 291 ~~~~~~a~~~L~~La 305 (401)
...+..++.+++...
T Consensus 461 ~paR~a~v~~l~at~ 475 (690)
T KOG1243|consen 461 VPARKAGVLALAATQ 475 (690)
T ss_pred CCchhhhhHHHhhcc
Confidence 445555555555444
No 479
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=26.52 E-value=1.6e+02 Score=27.57 Aligned_cols=52 Identities=15% Similarity=0.220 Sum_probs=37.2
Q ss_pred HHHHHHHHHc-cCCchhHHHHHHHHHHhcCCC---------------chhHHHHhcCcHHHHHHHHHh
Q 015728 234 RLLREIISLV-HHNSEASDAGVRAFSALCSTE---------------TNRKTLVQEGAINGLIAYISN 285 (401)
Q Consensus 234 g~i~~Lv~lL-~~~~~~~~~a~~aL~~Ls~~~---------------~n~~~iv~~G~v~~Lv~lL~~ 285 (401)
..|..++.-| .++...+..|+++|.+++... .|...+.+.|++++|+++|..
T Consensus 60 ~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~ 127 (293)
T PF07923_consen 60 DFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKM 127 (293)
T ss_pred HHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 4566666666 344557778888888877421 166677899999999999964
No 480
>KOG3726 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.49 E-value=34 Score=35.60 Aligned_cols=38 Identities=13% Similarity=0.019 Sum_probs=26.1
Q ss_pred cccccccccCC-----ceEcCccccccHHhHHHHHHcCCCCCCCCccc
Q 015728 14 RCPISLDLFTD-----PVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQT 56 (401)
Q Consensus 14 ~C~iC~~~~~~-----Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~ 56 (401)
+|-+|+. +++ |-++.|+..||..|..++-. .||+|+-.
T Consensus 656 ~C~vcq~-pedse~~v~rt~~C~~~~C~~c~~~~~~----~~~vC~~~ 698 (717)
T KOG3726|consen 656 TCKVCQL-PEDSETDVCRTTFCYTPYCVACSLDYAS----ISEVCGPD 698 (717)
T ss_pred HHHHhcC-CcCccccccCccccCCcchHhhhhhhhc----cCcccCch
Confidence 5667765 333 33457999999999766543 59999754
No 481
>KOG2272 consensus Focal adhesion protein PINCH-1, contains LIM domains [Signal transduction mechanisms; Cytoskeleton]
Probab=26.22 E-value=23 Score=31.95 Aligned_cols=45 Identities=20% Similarity=0.329 Sum_probs=0.0
Q ss_pred CCcccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccC
Q 015728 10 PHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTL 57 (401)
Q Consensus 10 ~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~ 57 (401)
+..|.|.-|...+......-=|.-||.+|.+.. +...|-.|++++
T Consensus 161 ~yHFkCt~C~keL~sdaRevk~eLyClrChD~m---gipiCgaC~rpI 205 (332)
T KOG2272|consen 161 PYHFKCTTCGKELTSDAREVKGELYCLRCHDKM---GIPICGACRRPI 205 (332)
T ss_pred ccceecccccccccchhhhhccceecccccccc---CCcccccccCch
No 482
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=25.66 E-value=45 Score=26.94 Aligned_cols=14 Identities=14% Similarity=0.107 Sum_probs=9.7
Q ss_pred CCCCCCCCcccCCC
Q 015728 46 GNLTCPVTMQTLHD 59 (401)
Q Consensus 46 ~~~~CP~c~~~~~~ 59 (401)
.+..||.|+..+..
T Consensus 25 ~p~vcP~cg~~~~~ 38 (129)
T TIGR02300 25 RPAVSPYTGEQFPP 38 (129)
T ss_pred CCccCCCcCCccCc
Confidence 45678888876544
No 483
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=25.61 E-value=43 Score=23.13 Aligned_cols=18 Identities=17% Similarity=0.217 Sum_probs=10.7
Q ss_pred cHHhHHHHHHcCCCCCCCCcc
Q 015728 35 DRSSIEKWLAAGNLTCPVTMQ 55 (401)
Q Consensus 35 c~~Ci~~~~~~~~~~CP~c~~ 55 (401)
|.+|-+. .....||.|+.
T Consensus 39 C~~CRk~---~~~Y~CP~CGF 56 (59)
T PRK14890 39 CEKCRKQ---SNPYTCPKCGF 56 (59)
T ss_pred chhHHhc---CCceECCCCCC
Confidence 5555432 24567998875
No 484
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=25.37 E-value=89 Score=20.14 Aligned_cols=28 Identities=25% Similarity=0.332 Sum_probs=19.9
Q ss_pred CcHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 015728 362 GVLTQLLLLLQSQCSNRTKTKARMLLKLL 390 (401)
Q Consensus 362 g~v~~L~~ll~~~~~~~~~~~A~~~L~~l 390 (401)
|+-..|-.++..+ ++.+|..|..+|..|
T Consensus 17 ~Ar~lL~evl~~~-~~~q~~eA~~LL~~l 44 (44)
T TIGR03504 17 GARELLEEVIEEG-DEAQRQEARALLAQL 44 (44)
T ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHhcC
Confidence 4445556677555 899999999988753
No 485
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=25.06 E-value=24 Score=19.13 Aligned_cols=13 Identities=31% Similarity=0.616 Sum_probs=8.1
Q ss_pred ccccccccccCCc
Q 015728 13 FRCPISLDLFTDP 25 (401)
Q Consensus 13 ~~C~iC~~~~~~P 25 (401)
|.|.+|...|.++
T Consensus 1 ~~C~~C~~~f~s~ 13 (25)
T PF12874_consen 1 FYCDICNKSFSSE 13 (25)
T ss_dssp EEETTTTEEESSH
T ss_pred CCCCCCCCCcCCH
Confidence 4567776666654
No 486
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=24.89 E-value=8e+02 Score=25.50 Aligned_cols=126 Identities=17% Similarity=0.144 Sum_probs=64.4
Q ss_pred HHHHHHHHHcc-----CCchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCH
Q 015728 234 RLLREIISLVH-----HNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIE 308 (401)
Q Consensus 234 g~i~~Lv~lL~-----~~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~ 308 (401)
-.++.|...|. ++...+..++.||.|+-. ...++.|..++......+..++..|+.+|..++...
T Consensus 486 ~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~ 555 (618)
T PF01347_consen 486 KYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHC 555 (618)
T ss_dssp GGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-
T ss_pred HHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcC
Confidence 35566666662 344678888899988853 247788888887311124567788888888775432
Q ss_pred hhHHHHHhCCCcHHHHHHHHHhcC-ChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHH
Q 015728 309 NSKDALINNPNGVYALVKMVFRVS-DHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLL 387 (401)
Q Consensus 309 ~~~~~~~~~~g~i~~Lv~~l~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L 387 (401)
.. .+.+.|.....+.+ +.+++-.|..+|.. |. +... .+..+...+..+.+..+.......|
T Consensus 556 ~~--------~v~~~l~~I~~n~~e~~EvRiaA~~~lm~-~~--P~~~-------~l~~i~~~l~~E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 556 PE--------KVREILLPIFMNTTEDPEVRIAAYLILMR-CN--PSPS-------VLQRIAQSLWNEPSNQVASFVYSHL 617 (618)
T ss_dssp HH--------HHHHHHHHHHH-TTS-HHHHHHHHHHHHH-T-----HH-------HHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred cH--------HHHHHHHHHhcCCCCChhHHHHHHHHHHh-cC--CCHH-------HHHHHHHHHhhCchHHHHHHHHHhc
Confidence 11 12234555322322 34455555444433 32 2211 2445566666555565555544433
No 487
>PHA02768 hypothetical protein; Provisional
Probab=24.81 E-value=98 Score=21.12 Aligned_cols=37 Identities=19% Similarity=0.291 Sum_probs=22.2
Q ss_pred cccccccccccCCceEcCccccccHHhHHHHHHc--CCCCCCCCcccCCC
Q 015728 12 LFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAA--GNLTCPVTMQTLHD 59 (401)
Q Consensus 12 ~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~--~~~~CP~c~~~~~~ 59 (401)
.|.|+.|...|... .-+...... .+..|..|++.+..
T Consensus 5 ~y~C~~CGK~Fs~~-----------~~L~~H~r~H~k~~kc~~C~k~f~~ 43 (55)
T PHA02768 5 GYECPICGEIYIKR-----------KSMITHLRKHNTNLKLSNCKRISLR 43 (55)
T ss_pred ccCcchhCCeeccH-----------HHHHHHHHhcCCcccCCcccceecc
Confidence 46788888888753 223333222 24568888876653
No 488
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=24.56 E-value=23 Score=24.97 Aligned_cols=29 Identities=17% Similarity=0.055 Sum_probs=14.1
Q ss_pred cccccccccccCC---ceE-cCccccccHHhHH
Q 015728 12 LFRCPISLDLFTD---PVT-LCTGQTYDRSSIE 40 (401)
Q Consensus 12 ~~~C~iC~~~~~~---Pv~-~~Cgh~fc~~Ci~ 40 (401)
.-.|.+|...|.- ... ..||+.||..|..
T Consensus 9 ~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~ 41 (69)
T PF01363_consen 9 ASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSS 41 (69)
T ss_dssp -SB-TTT--B-BSSS-EEE-TTT--EEECCCS-
T ss_pred CCcCcCcCCcCCCceeeEccCCCCCEECCchhC
Confidence 4579999987732 222 4699999988864
No 489
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=24.50 E-value=59 Score=31.48 Aligned_cols=35 Identities=29% Similarity=0.644 Sum_probs=31.7
Q ss_pred CcccccccccccCCceEcCccccccHHhHHHHHHc
Q 015728 11 HLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAA 45 (401)
Q Consensus 11 ~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~ 45 (401)
+...|.+.+..|.+|+.+.-|..|....|.+|+++
T Consensus 39 P~~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk 73 (518)
T KOG0883|consen 39 PFNHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLKK 73 (518)
T ss_pred ChhhceeccccccCcccccCCcEEeeehhhHHHHH
Confidence 35679999999999999999999999999999884
No 490
>PLN03086 PRLI-interacting factor K; Provisional
Probab=24.45 E-value=76 Score=32.76 Aligned_cols=13 Identities=15% Similarity=0.276 Sum_probs=6.8
Q ss_pred CCccccccccccc
Q 015728 10 PHLFRCPISLDLF 22 (401)
Q Consensus 10 ~~~~~C~iC~~~~ 22 (401)
.+.+.|+.|...|
T Consensus 451 ~~H~~C~~Cgk~f 463 (567)
T PLN03086 451 KNHVHCEKCGQAF 463 (567)
T ss_pred ccCccCCCCCCcc
Confidence 3445566665543
No 491
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=24.27 E-value=64 Score=21.50 Aligned_cols=31 Identities=19% Similarity=0.332 Sum_probs=19.1
Q ss_pred CcccccccccccCCc-eEcCccccccHHhHHH
Q 015728 11 HLFRCPISLDLFTDP-VTLCTGQTYDRSSIEK 41 (401)
Q Consensus 11 ~~~~C~iC~~~~~~P-v~~~Cgh~fc~~Ci~~ 41 (401)
+=|.|..|...+.+. ....=|.-||..|..+
T Consensus 25 ~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~ 56 (58)
T PF00412_consen 25 ECFKCSKCGKPLNDGDFYEKDGKPYCKDCYQK 56 (58)
T ss_dssp TTSBETTTTCBTTTSSEEEETTEEEEHHHHHH
T ss_pred cccccCCCCCccCCCeeEeECCEEECHHHHhh
Confidence 346777777766654 2334556677777654
No 492
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=23.88 E-value=67 Score=30.44 Aligned_cols=47 Identities=19% Similarity=0.195 Sum_probs=33.2
Q ss_pred cccccccccc--CCceE--cCccccccHHhHHHHHHcCCCCCCCCcccCCCC
Q 015728 13 FRCPISLDLF--TDPVT--LCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDP 60 (401)
Q Consensus 13 ~~C~iC~~~~--~~Pv~--~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~ 60 (401)
-.||+|-+.+ .+--. .+||+..|..|+..... +...||.|+++....
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~-~~~~~~~~rk~~~~~ 300 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISD-GDGRCPGCRKPYERN 300 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhcccc-cCCCCCccCCccccC
Confidence 4799999966 22222 36888888888876554 678899999765543
No 493
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=23.80 E-value=1.9e+02 Score=22.91 Aligned_cols=78 Identities=14% Similarity=0.161 Sum_probs=48.1
Q ss_pred HHHHHHHHc-cCCchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHH
Q 015728 235 LLREIISLV-HHNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDA 313 (401)
Q Consensus 235 ~i~~Lv~lL-~~~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~ 313 (401)
+|+.|+.-| +.+.++...|..+|...|..+.....++... |.| ..|.. ...-.|..+-+.+.|-.-
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~~~--p~l-~~L~~----------~g~~Ll~~~lS~~~Gf~~ 75 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVSLR--PSL-DHLGD----------IGSPLLLRFLSTPSGFRY 75 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHHcC--cHH-HHHHH----------cCHHHHHHHHcchHHHHH
Confidence 468899888 5567899999999999998777666666543 333 33331 122234444455555444
Q ss_pred HHhCCCcHHHHHH
Q 015728 314 LINNPNGVYALVK 326 (401)
Q Consensus 314 ~~~~~g~i~~Lv~ 326 (401)
+ .+.|.|..-++
T Consensus 76 L-~~~~~v~~El~ 87 (115)
T PF14663_consen 76 L-NEIGYVEKELD 87 (115)
T ss_pred h-cchhHHHHHHH
Confidence 4 34555555555
No 494
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=23.35 E-value=3.6e+02 Score=20.94 Aligned_cols=69 Identities=19% Similarity=0.128 Sum_probs=46.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHhcCCH-HHHHHHHHcCcHHHHHHHh-----hcCCCHHHHHHHHHHHHHH
Q 015728 321 VYALVKMVFRVSDHEGSENAINSLMMICCDSL-QAREEAICAGVLTQLLLLL-----QSQCSNRTKTKARMLLKLL 390 (401)
Q Consensus 321 i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~v~~L~~ll-----~~~~~~~~~~~A~~~L~~l 390 (401)
+..|.+. +..+++..+-.|+.+|-.+..+.+ .....+.....+..++.+. ....+..+|+++..++...
T Consensus 39 ~~~l~kR-l~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 39 VDAIKKR-INNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHH-hcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 4455554 345678899999999999998865 5666666666666565431 1122568899998888764
No 495
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=23.24 E-value=37 Score=19.13 Aligned_cols=8 Identities=38% Similarity=1.115 Sum_probs=3.9
Q ss_pred CCCCcccC
Q 015728 50 CPVTMQTL 57 (401)
Q Consensus 50 CP~c~~~~ 57 (401)
||.|.+.+
T Consensus 4 CPiC~~~v 11 (26)
T smart00734 4 CPVCFREV 11 (26)
T ss_pred CCCCcCcc
Confidence 55554444
No 496
>PF06827 zf-FPG_IleRS: Zinc finger found in FPG and IleRS; InterPro: IPR010663 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger domain found at the C-terminal in both DNA glycosylase/AP lyase enzymes and in isoleucyl tRNA synthetase. In these two types of enzymes, the C-terminal domain forms a zinc finger. Some related proteins may not bind zinc. DNA glycosylase/AP lyase enzymes are involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. These enzymes have both DNA glycosylase activity (3.2.2 from EC) and AP lyase activity (4.2.99.18 from EC) []. Examples include formamidopyrimidine-DNA glycosylases (Fpg; MutM) and endonuclease VIII (Nei). Formamidopyrimidine-DNA glycosylases (Fpg, MutM) is a trifunctional DNA base excision repair enzyme that removes a wide range of oxidation-damaged bases (N-glycosylase activity; 3.2.2.23 from EC) and cleaves both the 3'- and 5'-phosphodiester bonds of the resulting apurinic/apyrimidinic site (AP lyase activity; 4.2.99.18 from EC). Fpg has a preference for oxidised purines, excising oxidized purine bases such as 7,8-dihydro-8-oxoguanine (8-oxoG). ITs AP (apurinic/apyrimidinic) lyase activity introduces nicks in the DNA strand, cleaving the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. Fpg is a monomer composed of 2 domains connected by a flexible hinge []. The two DNA-binding motifs (a zinc finger and the helix-two-turns-helix motifs) suggest that the oxidized base is flipped out from double-stranded DNA in the binding mode and excised by a catalytic mechanism similar to that of bifunctional base excision repair enzymes []. Fpg binds one ion of zinc at the C terminus, which contains four conserved and essential cysteines []. Endonuclease VIII (Nei) has the same enzyme activities as Fpg above, but with a preference for oxidized pyrimidines, such as thymine glycol, 5,6-dihydrouracil and 5,6-dihydrothymine [, ]. An Fpg-type zinc finger is also found at the C terminus of isoleucyl tRNA synthetase (6.1.1.5 from EC) [, ]. This enzyme catalyses the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pre-transfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'post-transfer' editing and involves deacylation of mischarged Val-tRNA(Ile) []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003824 catalytic activity; PDB: 1K82_C 1Q39_A 2OQ4_B 2OPF_A 1K3X_A 1K3W_A 1Q3B_A 2EA0_A 1Q3C_A 2XZF_A ....
Probab=23.22 E-value=27 Score=20.19 Aligned_cols=25 Identities=12% Similarity=0.125 Sum_probs=10.9
Q ss_pred cccccccccCCceEcCccccccHHh
Q 015728 14 RCPISLDLFTDPVTLCTGQTYDRSS 38 (401)
Q Consensus 14 ~C~iC~~~~~~Pv~~~Cgh~fc~~C 38 (401)
.|+.|...+.+-..-.=...||..|
T Consensus 3 ~C~rC~~~~~~~~~~~r~~~~C~rC 27 (30)
T PF06827_consen 3 KCPRCWNYIEDIGINGRSTYLCPRC 27 (30)
T ss_dssp B-TTT--BBEEEEETTEEEEE-TTT
T ss_pred cCccCCCcceEeEecCCCCeECcCC
Confidence 5778887755443333334455555
No 497
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the KOG1243 consensus Protein kinase [General function prediction only]
Probab=23.11 E-value=8.2e+02 Score=25.99 Aligned_cols=104 Identities=13% Similarity=0.157 Sum_probs=61.9
Q ss_pred HHHHHHHHcc-CCchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHH
Q 015728 235 LLREIISLVH-HNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDA 313 (401)
Q Consensus 235 ~i~~Lv~lL~-~~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~ 313 (401)
+++.|+..+. ++ +....+..|..+...-+... .+.+++|.|++++. ..+..++-.-+.-+...... --.+
T Consensus 294 vlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~~e--yq~~i~p~l~kLF~---~~Dr~iR~~LL~~i~~~i~~--Lt~~ 364 (690)
T KOG1243|consen 294 VLPILLAALEFGD--AASDFLTPLFKLGKDLDEEE--YQVRIIPVLLKLFK---SPDRQIRLLLLQYIEKYIDH--LTKQ 364 (690)
T ss_pred HHHHHHHHhhccc--cchhhhhHHHHhhhhccccc--cccchhhhHHHHhc---CcchHHHHHHHHhHHHHhhh--cCHH
Confidence 4455555552 22 33344444444443222222 56789999999999 66766665555544443321 1123
Q ss_pred HHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhc
Q 015728 314 LINNPNGVYALVKMVFRVSDHEGSENAINSLMMICC 349 (401)
Q Consensus 314 ~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~ 349 (401)
++ +.-..|.++.. +++.++..++..+..+..|+.
T Consensus 365 ~~-~d~I~phv~~G-~~DTn~~Lre~Tlksm~~La~ 398 (690)
T KOG1243|consen 365 IL-NDQIFPHVALG-FLDTNATLREQTLKSMAVLAP 398 (690)
T ss_pred hh-cchhHHHHHhh-cccCCHHHHHHHHHHHHHHHh
Confidence 33 55678888884 677777899998888877753
No 499
>PRK06393 rpoE DNA-directed RNA polymerase subunit E''; Validated
Probab=22.80 E-value=45 Score=23.51 Aligned_cols=13 Identities=31% Similarity=0.473 Sum_probs=9.4
Q ss_pred CCCCCCCcccCCC
Q 015728 47 NLTCPVTMQTLHD 59 (401)
Q Consensus 47 ~~~CP~c~~~~~~ 59 (401)
...||.|+.....
T Consensus 17 ~~~Cp~Cgs~~~S 29 (64)
T PRK06393 17 EKTCPVHGDEKTT 29 (64)
T ss_pred CCcCCCCCCCcCC
Confidence 4579999886533
No 500
>COG3058 FdhE Uncharacterized protein involved in formate dehydrogenase formation [Posttranslational modification, protein turnover, chaperones]
Probab=22.45 E-value=58 Score=30.09 Aligned_cols=44 Identities=16% Similarity=0.277 Sum_probs=28.7
Q ss_pred cccccccccccCCceE----cCccccc--cHHhHHHHHHcCCCCCCCCccc
Q 015728 12 LFRCPISLDLFTDPVT----LCTGQTY--DRSSIEKWLAAGNLTCPVTMQT 56 (401)
Q Consensus 12 ~~~C~iC~~~~~~Pv~----~~Cgh~f--c~~Ci~~~~~~~~~~CP~c~~~ 56 (401)
.-.||+|+..-..-++ ..-|-+| |.-|...|.--+ ..|-.|+..
T Consensus 185 ~~~CPvCGS~PvaSmV~~g~~~~GlRYL~CslC~teW~~VR-~KC~nC~~t 234 (308)
T COG3058 185 RQYCPVCGSMPVASMVQIGETEQGLRYLHCSLCETEWHYVR-VKCSNCEQS 234 (308)
T ss_pred cccCCCcCCCCcceeeeecCccccchhhhhhhHHHHHHHHH-HHhcccccc
Confidence 4489999985444333 2355555 999999996533 237777654
Done!